Query 003279
Match_columns 834
No_of_seqs 1231 out of 2969
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 20:29:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003279.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003279hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 5.7E-44 1.2E-48 370.0 28.9 306 504-834 128-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 3.4E-42 7.3E-47 356.8 26.2 289 543-834 106-437 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-40 2.3E-45 350.4 24.8 286 544-834 167-458 (459)
4 KOG0286 G-protein beta subunit 100.0 5.8E-38 1.2E-42 316.4 34.9 290 540-834 43-343 (343)
5 KOG0272 U4/U6 small nuclear ri 100.0 8.5E-38 1.9E-42 328.5 22.5 271 499-793 183-458 (459)
6 KOG0265 U5 snRNP-specific prot 100.0 5.6E-36 1.2E-40 303.2 28.2 289 543-832 38-334 (338)
7 KOG0279 G protein beta subunit 100.0 2.5E-34 5.4E-39 288.8 32.5 285 543-834 6-311 (315)
8 KOG0318 WD40 repeat stress pro 100.0 5.5E-34 1.2E-38 306.4 37.2 338 491-834 59-558 (603)
9 cd00200 WD40 WD40 domain, foun 100.0 1E-33 2.2E-38 297.8 38.0 284 546-834 3-289 (289)
10 KOG0266 WD40 repeat-containing 100.0 9.3E-34 2E-38 325.4 40.9 286 545-834 151-452 (456)
11 KOG0315 G-protein beta subunit 100.0 3.4E-34 7.3E-39 283.3 29.7 268 565-834 11-286 (311)
12 KOG0285 Pleiotropic regulator 100.0 1.1E-34 2.4E-39 298.8 26.7 289 540-834 139-437 (460)
13 KOG0318 WD40 repeat stress pro 100.0 2.2E-33 4.8E-38 301.7 36.0 293 538-834 176-600 (603)
14 KOG0295 WD40 repeat-containing 100.0 8.9E-35 1.9E-39 300.9 23.5 288 543-834 99-404 (406)
15 KOG0315 G-protein beta subunit 100.0 3.3E-33 7.2E-38 276.2 31.9 289 502-815 9-309 (311)
16 KOG0284 Polyadenylation factor 100.0 3E-35 6.5E-40 307.9 17.4 277 552-834 96-378 (464)
17 KOG0273 Beta-transducin family 100.0 2E-33 4.4E-38 298.8 29.8 315 504-834 192-521 (524)
18 KOG0279 G protein beta subunit 100.0 4.6E-33 9.9E-38 279.7 29.6 275 502-795 27-313 (315)
19 KOG0273 Beta-transducin family 100.0 5.7E-33 1.2E-37 295.4 29.0 282 545-834 172-480 (524)
20 KOG0645 WD40 repeat protein [G 100.0 4.7E-32 1E-36 271.3 33.7 283 542-834 4-309 (312)
21 KOG0293 WD40 repeat-containing 100.0 1.5E-33 3.3E-38 295.0 22.6 290 539-834 211-511 (519)
22 KOG0291 WD40-repeat-containing 100.0 1.9E-31 4.2E-36 296.6 38.6 328 477-834 97-506 (893)
23 KOG0282 mRNA splicing factor [ 100.0 1.5E-33 3.3E-38 301.0 19.0 290 543-834 205-503 (503)
24 KOG0291 WD40-repeat-containing 100.0 3.8E-31 8.3E-36 294.2 37.1 288 542-834 297-610 (893)
25 KOG0296 Angio-associated migra 100.0 1.9E-31 4E-36 276.6 32.2 328 478-834 54-396 (399)
26 KOG0286 G-protein beta subunit 100.0 2.3E-31 4.9E-36 268.8 31.9 277 478-793 57-343 (343)
27 PLN00181 protein SPA1-RELATED; 100.0 5.8E-31 1.3E-35 323.0 41.0 284 548-834 479-791 (793)
28 KOG0263 Transcription initiati 100.0 6E-32 1.3E-36 304.2 28.2 272 548-824 374-703 (707)
29 KOG0263 Transcription initiati 100.0 8.2E-32 1.8E-36 303.1 27.0 253 495-752 382-651 (707)
30 KOG0319 WD40-repeat-containing 100.0 3.3E-31 7.1E-36 295.0 28.2 288 543-834 314-617 (775)
31 KOG0284 Polyadenylation factor 100.0 4.8E-32 1E-36 284.0 16.3 279 478-794 98-379 (464)
32 KOG0319 WD40-repeat-containing 100.0 3.1E-30 6.8E-35 287.2 30.3 313 499-834 113-575 (775)
33 KOG0295 WD40 repeat-containing 100.0 1E-30 2.2E-35 270.9 22.5 272 499-794 116-405 (406)
34 KOG0306 WD40-repeat-containing 100.0 5.4E-30 1.2E-34 285.0 28.5 281 546-834 367-662 (888)
35 KOG0316 Conserved WD40 repeat- 100.0 1.2E-29 2.6E-34 249.2 26.5 280 544-833 9-296 (307)
36 KOG0276 Vesicle coat complex C 100.0 5.5E-30 1.2E-34 279.7 26.3 282 546-832 7-295 (794)
37 KOG0643 Translation initiation 100.0 2.4E-29 5.2E-34 251.3 28.6 281 547-833 5-314 (327)
38 KOG0296 Angio-associated migra 100.0 1.3E-29 2.8E-34 262.9 27.4 285 544-834 56-354 (399)
39 KOG0281 Beta-TrCP (transducin 100.0 3.5E-31 7.5E-36 271.7 15.4 266 550-834 195-475 (499)
40 KOG0306 WD40-repeat-containing 100.0 3E-29 6.5E-34 279.1 31.8 308 504-833 78-577 (888)
41 cd00200 WD40 WD40 domain, foun 100.0 3.3E-28 7.2E-33 255.8 37.3 266 504-793 22-289 (289)
42 KOG0266 WD40 repeat-containing 100.0 7E-29 1.5E-33 285.1 33.0 272 502-795 170-454 (456)
43 KOG0278 Serine/threonine kinas 100.0 3.5E-30 7.6E-35 254.7 19.0 281 546-834 8-295 (334)
44 KOG1407 WD40 repeat protein [F 100.0 5.4E-29 1.2E-33 248.2 26.8 282 546-833 14-308 (313)
45 KOG0276 Vesicle coat complex C 100.0 1.4E-28 3E-33 268.8 28.9 269 500-790 22-294 (794)
46 KOG0275 Conserved WD40 repeat- 100.0 6.3E-30 1.4E-34 260.1 16.7 280 550-834 211-507 (508)
47 KOG0288 WD40 repeat protein Ti 100.0 1.6E-29 3.4E-34 265.6 18.2 282 545-834 168-459 (459)
48 KOG0292 Vesicle coat complex C 100.0 1.6E-28 3.5E-33 276.4 26.3 282 548-833 5-318 (1202)
49 KOG0265 U5 snRNP-specific prot 100.0 8.8E-28 1.9E-32 243.9 28.6 267 504-794 60-337 (338)
50 KOG0281 Beta-TrCP (transducin 100.0 7.7E-30 1.7E-34 261.8 13.6 266 503-800 207-482 (499)
51 KOG0645 WD40 repeat protein [G 100.0 1.6E-27 3.4E-32 239.0 29.6 270 503-795 27-311 (312)
52 KOG1446 Histone H3 (Lys4) meth 100.0 5.8E-27 1.3E-31 240.4 32.8 282 544-833 6-300 (311)
53 KOG0640 mRNA cleavage stimulat 100.0 4.3E-28 9.4E-33 246.1 22.2 288 543-834 103-424 (430)
54 KOG0285 Pleiotropic regulator 100.0 1.2E-27 2.6E-32 247.0 25.1 280 495-796 155-440 (460)
55 KOG0313 Microtubule binding pr 100.0 2.3E-27 4.9E-32 247.2 27.3 278 550-834 103-416 (423)
56 PLN00181 protein SPA1-RELATED; 100.0 2.1E-26 4.7E-31 282.7 41.0 284 496-794 488-792 (793)
57 KOG0283 WD40 repeat-containing 100.0 1.1E-27 2.4E-32 272.1 26.0 249 541-795 255-576 (712)
58 KOG0268 Sof1-like rRNA process 100.0 9.5E-29 2E-33 255.9 15.6 283 541-834 55-343 (433)
59 KOG0313 Microtubule binding pr 100.0 3.7E-27 8E-32 245.6 27.4 270 500-794 112-417 (423)
60 PTZ00420 coronin; Provisional 100.0 4.1E-26 9E-31 263.4 37.7 249 570-818 50-318 (568)
61 KOG0282 mRNA splicing factor [ 100.0 1.4E-28 3E-33 263.2 15.3 248 584-834 204-460 (503)
62 KOG0277 Peroxisomal targeting 100.0 2.4E-27 5.2E-32 235.5 23.0 277 556-834 12-307 (311)
63 KOG0293 WD40 repeat-containing 100.0 1.3E-27 2.8E-32 250.6 21.6 271 504-796 237-514 (519)
64 KOG0316 Conserved WD40 repeat- 100.0 5.3E-27 1.2E-31 230.6 24.2 266 500-792 26-296 (307)
65 KOG0772 Uncharacterized conser 100.0 6.4E-27 1.4E-31 251.2 26.8 289 543-833 158-484 (641)
66 KOG0278 Serine/threonine kinas 100.0 8.6E-28 1.9E-32 237.9 18.2 251 543-800 50-302 (334)
67 KOG0310 Conserved WD40 repeat- 100.0 9.3E-27 2E-31 249.8 26.5 276 552-832 26-305 (487)
68 KOG0289 mRNA splicing factor [ 100.0 1.3E-26 2.9E-31 244.7 26.7 276 553-833 220-503 (506)
69 KOG0274 Cdc4 and related F-box 100.0 2.5E-26 5.5E-31 264.3 30.4 270 550-834 206-480 (537)
70 KOG0275 Conserved WD40 repeat- 100.0 1.8E-27 3.8E-32 242.4 17.7 273 504-793 226-507 (508)
71 KOG0973 Histone transcription 100.0 2.4E-26 5.2E-31 267.0 29.4 280 550-833 11-352 (942)
72 PTZ00421 coronin; Provisional 100.0 1.8E-25 4E-30 256.7 36.4 264 553-818 21-315 (493)
73 KOG0305 Anaphase promoting com 99.9 4.6E-26 9.9E-31 253.5 28.9 268 557-834 182-459 (484)
74 KOG0647 mRNA export protein (c 99.9 6.1E-26 1.3E-30 230.6 26.6 271 549-824 24-311 (347)
75 KOG0294 WD40 repeat-containing 99.9 1.3E-25 2.8E-30 229.4 28.2 294 506-815 4-306 (362)
76 KOG0283 WD40 repeat-containing 99.9 2.6E-26 5.6E-31 261.1 25.6 245 586-834 258-574 (712)
77 KOG0300 WD40 repeat-containing 99.9 4.5E-26 9.7E-31 231.8 21.8 289 541-834 137-474 (481)
78 KOG0274 Cdc4 and related F-box 99.9 2E-25 4.4E-30 256.9 30.1 265 503-800 218-487 (537)
79 KOG0292 Vesicle coat complex C 99.9 1.9E-25 4.1E-30 251.9 28.7 269 502-795 20-321 (1202)
80 KOG0308 Conserved WD40 repeat- 99.9 1.9E-26 4.2E-31 253.7 19.1 275 557-834 29-325 (735)
81 KOG0310 Conserved WD40 repeat- 99.9 1.4E-25 2.9E-30 240.9 24.9 241 548-794 64-308 (487)
82 KOG0641 WD40 repeat protein [G 99.9 7.5E-24 1.6E-28 206.9 34.4 290 540-833 21-346 (350)
83 KOG0288 WD40 repeat protein Ti 99.9 3E-26 6.5E-31 241.0 17.4 264 504-792 188-458 (459)
84 KOG1407 WD40 repeat protein [F 99.9 2.5E-25 5.5E-30 222.0 21.6 241 588-832 14-257 (313)
85 PTZ00421 coronin; Provisional 99.9 8.4E-24 1.8E-28 243.0 36.9 245 546-797 69-333 (493)
86 KOG0973 Histone transcription 99.9 5.4E-25 1.2E-29 255.8 26.9 284 504-798 26-358 (942)
87 KOG0277 Peroxisomal targeting 99.9 2.5E-25 5.4E-30 221.3 19.9 249 542-794 51-308 (311)
88 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.8E-23 3.9E-28 225.4 35.9 264 564-834 1-277 (300)
89 KOG1036 Mitotic spindle checkp 99.9 2.3E-24 4.9E-29 220.2 26.7 269 551-826 12-294 (323)
90 KOG0640 mRNA cleavage stimulat 99.9 5.8E-25 1.3E-29 223.4 21.6 287 504-794 125-425 (430)
91 KOG2096 WD40 repeat protein [G 99.9 4.2E-24 9.1E-29 218.1 26.5 285 545-833 79-399 (420)
92 KOG1539 WD repeat protein [Gen 99.9 3.3E-23 7.2E-28 233.8 36.3 309 505-833 174-645 (910)
93 KOG0299 U3 snoRNP-associated p 99.9 1.9E-24 4.2E-29 230.4 24.9 294 493-792 144-453 (479)
94 KOG0641 WD40 repeat protein [G 99.9 4.9E-23 1.1E-27 201.2 32.3 290 498-795 39-349 (350)
95 KOG0305 Anaphase promoting com 99.9 4.3E-24 9.3E-29 237.8 28.1 239 552-797 217-463 (484)
96 KOG0308 Conserved WD40 repeat- 99.9 6.8E-25 1.5E-29 241.6 21.1 316 502-834 36-391 (735)
97 KOG1408 WD40 repeat protein [F 99.9 3E-24 6.5E-29 237.2 25.9 316 502-834 335-711 (1080)
98 KOG0301 Phospholipase A2-activ 99.9 4.6E-24 9.9E-29 236.8 27.4 275 543-833 5-285 (745)
99 KOG2055 WD40 repeat protein [G 99.9 4.7E-24 1E-28 227.2 25.4 282 552-834 213-510 (514)
100 KOG0639 Transducin-like enhanc 99.9 9.2E-24 2E-28 225.9 25.6 277 550-833 417-701 (705)
101 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4E-22 8.6E-27 214.8 38.8 285 504-816 2-300 (300)
102 KOG1273 WD40 repeat protein [G 99.9 9.9E-24 2.1E-28 215.2 24.3 276 555-834 26-320 (405)
103 PTZ00420 coronin; Provisional 99.9 8.1E-23 1.7E-27 236.2 34.3 229 544-777 66-318 (568)
104 KOG0299 U3 snoRNP-associated p 99.9 2E-23 4.2E-28 222.8 26.8 273 545-824 135-443 (479)
105 KOG0643 Translation initiation 99.9 2.8E-23 6.2E-28 207.9 25.4 234 589-826 5-251 (327)
106 KOG0294 WD40 repeat-containing 99.9 3.2E-23 7E-28 211.9 25.8 259 567-834 4-279 (362)
107 KOG0647 mRNA export protein (c 99.9 7.8E-23 1.7E-27 208.1 28.1 276 471-786 22-314 (347)
108 KOG0301 Phospholipase A2-activ 99.9 3.2E-23 6.8E-28 230.2 26.1 261 504-797 26-290 (745)
109 KOG0772 Uncharacterized conser 99.9 1.7E-23 3.7E-28 225.0 23.0 285 491-793 167-485 (641)
110 KOG1063 RNA polymerase II elon 99.9 1E-22 2.2E-27 226.0 28.4 334 497-834 200-646 (764)
111 KOG1332 Vesicle coat complex C 99.9 1E-23 2.2E-28 208.8 18.4 248 548-795 7-286 (299)
112 KOG0650 WD40 repeat nucleolar 99.9 2.8E-23 6E-28 226.8 23.2 290 539-833 387-732 (733)
113 KOG0268 Sof1-like rRNA process 99.9 4.8E-24 1E-28 221.2 16.2 266 505-798 81-348 (433)
114 KOG1446 Histone H3 (Lys4) meth 99.9 4E-22 8.7E-27 204.9 30.0 247 584-834 4-260 (311)
115 KOG0289 mRNA splicing factor [ 99.9 1E-22 2.3E-27 215.4 25.2 270 504-794 232-505 (506)
116 KOG1408 WD40 repeat protein [F 99.9 1.1E-22 2.5E-27 224.8 23.9 244 550-796 457-714 (1080)
117 KOG0269 WD40 repeat-containing 99.9 4.4E-23 9.5E-28 231.3 19.2 275 554-831 41-335 (839)
118 KOG0264 Nucleosome remodeling 99.9 2.4E-22 5.3E-27 214.7 22.9 253 544-796 116-405 (422)
119 KOG1274 WD40 repeat protein [G 99.9 1.4E-21 3E-26 223.2 29.2 276 549-832 10-296 (933)
120 KOG1332 Vesicle coat complex C 99.9 1.1E-22 2.4E-27 201.5 17.3 243 591-834 8-284 (299)
121 KOG4283 Transcription-coupled 99.9 1.4E-21 3E-26 197.9 25.0 283 547-833 38-362 (397)
122 KOG0646 WD40 repeat protein [G 99.9 3E-22 6.5E-27 214.2 20.9 228 552-782 81-336 (476)
123 KOG0321 WD40 repeat-containing 99.9 4.3E-22 9.3E-27 219.3 21.9 275 558-834 55-389 (720)
124 KOG0264 Nucleosome remodeling 99.9 7.3E-22 1.6E-26 211.1 22.3 241 592-834 122-402 (422)
125 KOG2106 Uncharacterized conser 99.9 1.1E-20 2.5E-25 203.0 30.5 302 506-834 260-624 (626)
126 KOG2445 Nuclear pore complex c 99.9 4.5E-21 9.7E-26 195.7 25.7 257 549-834 10-316 (361)
127 KOG2106 Uncharacterized conser 99.9 8.1E-20 1.7E-24 196.5 36.0 289 533-834 226-519 (626)
128 KOG1539 WD repeat protein [Gen 99.9 3.4E-20 7.4E-25 209.7 34.7 276 553-834 160-604 (910)
129 KOG1274 WD40 repeat protein [G 99.9 3.9E-21 8.4E-26 219.6 27.1 241 591-834 10-260 (933)
130 KOG0267 Microtubule severing p 99.9 5.7E-23 1.2E-27 228.7 10.4 253 564-827 4-259 (825)
131 KOG0639 Transducin-like enhanc 99.9 5.3E-21 1.2E-25 204.9 23.9 273 500-794 428-703 (705)
132 KOG0267 Microtubule severing p 99.9 6.5E-23 1.4E-27 228.3 9.5 238 545-787 21-260 (825)
133 KOG2055 WD40 repeat protein [G 99.9 5.3E-21 1.1E-25 204.1 22.1 269 504-795 226-512 (514)
134 KOG1036 Mitotic spindle checkp 99.9 3.2E-20 6.9E-25 190.0 26.8 253 504-786 26-295 (323)
135 KOG2048 WD40 repeat protein [G 99.9 1.1E-19 2.4E-24 202.0 32.9 280 544-832 17-315 (691)
136 KOG1063 RNA polymerase II elon 99.9 2.6E-20 5.7E-25 207.0 27.1 357 471-834 281-761 (764)
137 KOG2048 WD40 repeat protein [G 99.9 2.9E-19 6.2E-24 198.7 34.9 230 501-751 35-276 (691)
138 KOG0300 WD40 repeat-containing 99.9 8.4E-21 1.8E-25 193.5 20.2 258 566-834 126-426 (481)
139 KOG0646 WD40 repeat protein [G 99.9 2.6E-20 5.5E-25 199.5 24.8 258 570-834 13-305 (476)
140 KOG1034 Transcriptional repres 99.9 3.2E-20 7E-25 190.9 21.9 285 546-834 32-381 (385)
141 KOG0302 Ribosome Assembly prot 99.9 3E-20 6.4E-25 194.0 21.4 243 549-792 148-435 (440)
142 KOG4378 Nuclear protein COP1 [ 99.9 4.4E-20 9.4E-25 197.9 23.0 258 555-818 37-305 (673)
143 KOG4328 WD40 protein [Function 99.9 8.2E-20 1.8E-24 195.0 24.5 294 539-833 173-492 (498)
144 KOG0269 WD40 repeat-containing 99.9 6E-21 1.3E-25 214.3 16.3 234 502-752 99-342 (839)
145 KOG1538 Uncharacterized conser 99.9 5.3E-20 1.2E-24 202.4 23.1 269 554-834 14-291 (1081)
146 KOG4283 Transcription-coupled 99.9 6.6E-20 1.4E-24 185.8 21.5 208 591-798 40-279 (397)
147 KOG2919 Guanine nucleotide-bin 99.8 1.2E-19 2.7E-24 186.1 22.9 267 555-826 52-360 (406)
148 KOG0321 WD40 repeat-containing 99.8 7.8E-20 1.7E-24 201.6 22.8 282 500-797 61-393 (720)
149 COG2319 FOG: WD40 repeat [Gene 99.8 2.6E-17 5.7E-22 181.5 41.8 312 500-834 74-398 (466)
150 KOG0307 Vesicle coat complex C 99.8 1.6E-20 3.6E-25 219.5 16.5 243 553-798 65-330 (1049)
151 COG2319 FOG: WD40 repeat [Gene 99.8 3.2E-17 6.9E-22 180.9 41.2 284 543-834 146-440 (466)
152 KOG1009 Chromatin assembly com 99.8 4.1E-19 8.9E-24 187.4 24.3 296 505-832 28-368 (434)
153 KOG0270 WD40 repeat-containing 99.8 1.9E-19 4.1E-24 191.8 20.7 236 563-800 191-454 (463)
154 KOG4328 WD40 protein [Function 99.8 1.7E-19 3.7E-24 192.5 20.2 256 579-834 171-448 (498)
155 KOG2096 WD40 repeat protein [G 99.8 6E-19 1.3E-23 180.6 22.5 243 588-833 80-357 (420)
156 KOG0307 Vesicle coat complex C 99.8 2.2E-20 4.7E-25 218.5 13.4 274 557-833 11-324 (1049)
157 KOG1273 WD40 repeat protein [G 99.8 5.6E-19 1.2E-23 180.7 21.6 269 502-795 34-322 (405)
158 KOG1445 Tumor-specific antigen 99.8 1E-18 2.2E-23 191.6 23.8 134 700-834 602-748 (1012)
159 KOG4378 Nuclear protein COP1 [ 99.8 8.1E-19 1.8E-23 188.2 21.2 219 555-777 82-305 (673)
160 KOG0270 WD40 repeat-containing 99.8 7.3E-19 1.6E-23 187.4 20.4 252 500-752 189-451 (463)
161 KOG0302 Ribosome Assembly prot 99.8 1E-18 2.2E-23 182.6 20.9 241 591-833 148-435 (440)
162 KOG0650 WD40 repeat nucleolar 99.8 1E-18 2.2E-23 191.4 21.6 243 586-833 392-677 (733)
163 KOG4227 WD40 repeat protein [G 99.8 2E-18 4.3E-23 180.3 21.9 283 546-834 50-385 (609)
164 KOG0322 G-protein beta subunit 99.8 6.9E-19 1.5E-23 176.4 14.6 285 544-834 6-321 (323)
165 PRK11028 6-phosphogluconolacto 99.8 7.4E-17 1.6E-21 178.3 31.8 266 567-834 5-302 (330)
166 KOG0303 Actin-binding protein 99.8 1E-17 2.2E-22 176.1 22.9 228 589-817 76-320 (472)
167 PRK11028 6-phosphogluconolacto 99.8 6E-16 1.3E-20 171.0 36.7 288 507-814 6-327 (330)
168 KOG0642 Cell-cycle nuclear pro 99.8 2.4E-18 5.1E-23 188.2 16.9 254 542-800 284-566 (577)
169 KOG1188 WD40 repeat protein [G 99.8 4.6E-18 1E-22 176.1 18.0 266 565-834 41-344 (376)
170 KOG0644 Uncharacterized conser 99.8 5.1E-19 1.1E-23 199.4 9.9 275 543-833 181-465 (1113)
171 KOG1517 Guanine nucleotide bin 99.8 9.1E-17 2E-21 185.4 25.1 281 551-834 1063-1379(1387)
172 KOG2919 Guanine nucleotide-bin 99.8 1.7E-16 3.6E-21 163.3 24.2 272 505-786 63-361 (406)
173 KOG1334 WD40 repeat protein [G 99.8 4.6E-18 1E-22 182.8 13.1 292 542-833 132-463 (559)
174 KOG2445 Nuclear pore complex c 99.7 6.1E-16 1.3E-20 158.4 26.5 250 498-763 20-331 (361)
175 KOG0642 Cell-cycle nuclear pro 99.7 4.9E-17 1.1E-21 178.0 17.5 255 496-764 299-572 (577)
176 KOG0290 Conserved WD40 repeat- 99.7 3.5E-16 7.5E-21 158.9 22.1 241 549-792 93-362 (364)
177 KOG1034 Transcriptional repres 99.7 6.3E-17 1.4E-21 166.8 16.1 242 550-795 87-383 (385)
178 KOG0303 Actin-binding protein 99.7 2.2E-16 4.7E-21 166.1 20.0 206 544-753 73-297 (472)
179 KOG1587 Cytoplasmic dynein int 99.7 1.6E-15 3.4E-20 174.1 27.9 258 574-834 222-514 (555)
180 KOG1240 Protein kinase contain 99.7 9.6E-16 2.1E-20 179.8 26.4 292 543-834 1039-1431(1431)
181 KOG1007 WD repeat protein TSSC 99.7 3.8E-16 8.2E-21 158.5 20.0 270 545-832 56-357 (370)
182 KOG0649 WD40 repeat protein [G 99.7 4.2E-15 9.1E-20 147.7 25.8 268 554-833 12-313 (325)
183 KOG1188 WD40 repeat protein [G 99.7 5.1E-16 1.1E-20 161.1 20.0 275 502-795 39-346 (376)
184 PRK01742 tolB translocation pr 99.7 1.4E-15 2.9E-20 174.3 25.7 233 573-817 183-426 (429)
185 KOG1963 WD40 repeat protein [G 99.7 5.1E-15 1.1E-19 169.9 28.7 282 549-834 202-536 (792)
186 KOG1524 WD40 repeat-containing 99.7 7E-16 1.5E-20 167.2 19.5 261 550-832 12-282 (737)
187 KOG4497 Uncharacterized conser 99.7 1.2E-14 2.6E-19 149.9 25.5 271 553-829 49-425 (447)
188 KOG1587 Cytoplasmic dynein int 99.7 2.9E-15 6.4E-20 171.9 22.5 246 551-797 241-518 (555)
189 PRK03629 tolB translocation pr 99.7 2.4E-14 5.1E-19 163.9 29.9 234 574-816 179-427 (429)
190 KOG0290 Conserved WD40 repeat- 99.7 1.4E-14 3E-19 147.4 24.6 278 544-826 37-356 (364)
191 KOG0649 WD40 repeat protein [G 99.7 1.1E-14 2.3E-19 144.8 22.6 229 596-833 12-271 (325)
192 KOG1310 WD40 repeat protein [G 99.7 4.2E-16 9.1E-21 169.3 13.6 238 543-800 41-308 (758)
193 KOG2110 Uncharacterized conser 99.7 2.9E-14 6.2E-19 149.7 26.7 230 594-834 5-246 (391)
194 KOG2110 Uncharacterized conser 99.7 1.2E-13 2.6E-18 145.0 30.5 233 552-796 5-249 (391)
195 KOG1538 Uncharacterized conser 99.7 6.5E-15 1.4E-19 162.8 22.0 240 544-795 45-293 (1081)
196 PRK01742 tolB translocation pr 99.7 5.7E-15 1.2E-19 169.1 22.4 220 546-776 197-426 (429)
197 KOG1523 Actin-related protein 99.7 1.6E-14 3.4E-19 149.1 22.5 224 550-776 8-260 (361)
198 PF02239 Cytochrom_D1: Cytochr 99.6 2.2E-13 4.7E-18 152.1 32.9 285 544-834 28-345 (369)
199 PRK04922 tolB translocation pr 99.6 4.8E-14 1E-18 161.7 28.0 234 574-816 184-432 (433)
200 KOG2139 WD40 repeat protein [G 99.6 6.2E-14 1.3E-18 146.5 25.4 278 552-833 98-428 (445)
201 PRK05137 tolB translocation pr 99.6 8.6E-14 1.9E-18 159.8 29.6 234 574-817 182-433 (435)
202 KOG2321 WD40 repeat protein [G 99.6 3.7E-14 8E-19 155.4 24.8 277 550-833 49-340 (703)
203 KOG1007 WD repeat protein TSSC 99.6 1.6E-14 3.4E-19 146.9 18.7 211 539-751 109-362 (370)
204 KOG1272 WD40-repeat-containing 99.6 1.1E-15 2.5E-20 163.7 11.0 262 555-828 132-401 (545)
205 KOG0771 Prolactin regulatory e 99.6 7.2E-15 1.6E-19 156.8 16.0 194 556-751 148-355 (398)
206 KOG0644 Uncharacterized conser 99.6 1.2E-15 2.6E-20 172.6 10.5 270 497-798 196-471 (1113)
207 KOG1963 WD40 repeat protein [G 99.6 1.3E-13 2.9E-18 158.5 26.9 274 556-833 20-319 (792)
208 PRK02889 tolB translocation pr 99.6 1.9E-13 4.1E-18 156.4 27.6 235 574-817 176-425 (427)
209 KOG4227 WD40 repeat protein [G 99.6 8.9E-14 1.9E-18 145.9 22.4 285 495-794 60-386 (609)
210 KOG1445 Tumor-specific antigen 99.6 1.4E-13 3E-18 151.7 24.1 239 560-800 587-849 (1012)
211 KOG1524 WD40 repeat-containing 99.6 1.4E-14 3E-19 157.3 15.7 207 565-792 76-283 (737)
212 KOG2394 WD40 protein DMR-N9 [G 99.6 6.3E-14 1.4E-18 152.7 20.5 244 554-815 125-383 (636)
213 KOG2111 Uncharacterized conser 99.6 2E-12 4.3E-17 133.7 30.3 232 555-796 8-257 (346)
214 PF10282 Lactonase: Lactonase, 99.6 1.9E-11 4.1E-16 136.1 40.5 261 554-814 38-345 (345)
215 PRK02889 tolB translocation pr 99.6 5.5E-13 1.2E-17 152.7 27.9 223 547-776 190-425 (427)
216 KOG1517 Guanine nucleotide bin 99.6 1.9E-13 4.1E-18 158.4 23.8 248 550-798 1107-1384(1387)
217 KOG1009 Chromatin assembly com 99.6 3.3E-13 7.1E-18 143.2 22.9 282 490-799 64-376 (434)
218 KOG1523 Actin-related protein 99.6 2E-13 4.4E-18 140.9 20.6 228 590-818 6-261 (361)
219 KOG3881 Uncharacterized conser 99.6 2.6E-13 5.7E-18 143.4 21.4 261 551-817 54-342 (412)
220 KOG0771 Prolactin regulatory e 99.6 3.7E-13 8.1E-18 143.8 22.4 191 641-833 148-351 (398)
221 PRK03629 tolB translocation pr 99.6 7.9E-13 1.7E-17 151.3 26.8 220 548-776 194-428 (429)
222 PF10282 Lactonase: Lactonase, 99.6 3.2E-11 6.9E-16 134.3 38.4 267 567-834 2-320 (345)
223 KOG2315 Predicted translation 99.5 1.9E-12 4.1E-17 142.5 27.5 267 553-834 35-388 (566)
224 TIGR02800 propeller_TolB tol-p 99.5 1.6E-12 3.5E-17 148.2 28.4 232 574-814 170-416 (417)
225 PRK04922 tolB translocation pr 99.5 7.4E-13 1.6E-17 151.9 25.5 221 546-775 197-432 (433)
226 KOG1354 Serine/threonine prote 99.5 9.7E-13 2.1E-17 136.8 21.6 277 552-833 25-431 (433)
227 PRK05137 tolB translocation pr 99.5 3.3E-12 7.1E-17 146.8 28.6 221 546-776 195-433 (435)
228 KOG2111 Uncharacterized conser 99.5 3.4E-12 7.4E-17 132.0 25.4 231 596-833 7-253 (346)
229 PRK00178 tolB translocation pr 99.5 5E-12 1.1E-16 145.1 29.7 234 575-817 180-428 (430)
230 PF02239 Cytochrom_D1: Cytochr 99.5 1.6E-11 3.4E-16 137.2 32.1 263 565-834 6-300 (369)
231 KOG3881 Uncharacterized conser 99.5 1.3E-12 2.9E-17 138.1 20.8 237 593-834 54-318 (412)
232 KOG1272 WD40-repeat-containing 99.5 3.4E-14 7.4E-19 152.5 8.4 229 596-834 131-360 (545)
233 PRK04792 tolB translocation pr 99.5 8.6E-12 1.9E-16 143.5 27.6 233 575-816 199-446 (448)
234 KOG1240 Protein kinase contain 99.5 4.2E-12 9.2E-17 149.7 24.7 251 579-834 1034-1332(1431)
235 KOG2394 WD40 protein DMR-N9 [G 99.5 2.9E-12 6.2E-17 140.0 21.3 170 561-731 182-384 (636)
236 KOG2139 WD40 repeat protein [G 99.5 7E-12 1.5E-16 131.3 22.0 229 595-828 99-367 (445)
237 KOG4497 Uncharacterized conser 99.4 5.3E-13 1.1E-17 137.9 12.1 221 599-833 13-237 (447)
238 KOG1409 Uncharacterized conser 99.4 5.8E-12 1.3E-16 131.3 19.7 252 540-796 12-271 (404)
239 KOG0322 G-protein beta subunit 99.4 1.7E-12 3.8E-17 130.8 15.3 264 504-794 26-322 (323)
240 PRK01029 tolB translocation pr 99.4 9E-11 1.9E-15 134.2 29.6 238 574-818 165-426 (428)
241 KOG1334 WD40 repeat protein [G 99.4 1.6E-12 3.4E-17 140.6 14.1 283 495-798 146-469 (559)
242 COG5354 Uncharacterized protei 99.4 1.1E-10 2.4E-15 127.3 28.2 272 554-834 73-393 (561)
243 PRK00178 tolB translocation pr 99.4 5.8E-11 1.3E-15 136.3 26.9 222 546-776 192-428 (430)
244 KOG2321 WD40 repeat protein [G 99.4 2E-11 4.4E-16 134.3 21.6 237 592-834 49-300 (703)
245 TIGR02658 TTQ_MADH_Hv methylam 99.4 8.5E-10 1.8E-14 121.0 34.4 256 574-834 27-328 (352)
246 COG2706 3-carboxymuconate cycl 99.4 2.2E-09 4.7E-14 113.8 35.4 266 550-815 37-345 (346)
247 TIGR02800 propeller_TolB tol-p 99.4 8.5E-11 1.8E-15 134.1 27.1 205 616-828 170-386 (417)
248 PRK04792 tolB translocation pr 99.4 6.5E-11 1.4E-15 136.3 25.8 221 547-776 212-447 (448)
249 PF08662 eIF2A: Eukaryotic tra 99.4 3E-11 6.6E-16 123.0 20.1 146 682-834 8-177 (194)
250 KOG1310 WD40 repeat protein [G 99.4 1.9E-12 4.1E-17 141.2 11.8 166 586-751 42-232 (758)
251 PRK01029 tolB translocation pr 99.4 1.3E-10 2.7E-15 133.0 27.2 215 616-834 165-401 (428)
252 KOG4594 Sequence-specific sing 99.4 3.5E-13 7.6E-18 136.0 4.9 77 4-81 12-92 (354)
253 COG2706 3-carboxymuconate cycl 99.4 2.4E-09 5.2E-14 113.5 32.4 261 573-833 15-318 (346)
254 PF08662 eIF2A: Eukaryotic tra 99.4 7.8E-11 1.7E-15 120.0 20.9 155 556-716 9-185 (194)
255 KOG0974 WD-repeat protein WDR6 99.3 6.5E-11 1.4E-15 138.6 19.1 266 553-834 8-286 (967)
256 KOG4547 WD40 repeat-containing 99.3 3.9E-10 8.5E-15 125.5 24.3 187 562-751 3-221 (541)
257 TIGR03300 assembly_YfgL outer 99.3 6.3E-09 1.4E-13 117.3 33.3 251 563-833 104-376 (377)
258 KOG2041 WD40 repeat protein [G 99.3 6.7E-10 1.5E-14 124.5 22.9 275 552-832 14-333 (1189)
259 KOG4190 Uncharacterized conser 99.3 3.5E-11 7.5E-16 131.1 12.5 280 544-832 727-1032(1034)
260 KOG2314 Translation initiation 99.3 9.9E-10 2.2E-14 120.7 23.8 271 550-827 248-558 (698)
261 KOG2315 Predicted translation 99.2 1.3E-09 2.9E-14 120.4 24.2 248 556-816 129-410 (566)
262 KOG0974 WD-repeat protein WDR6 99.2 5.4E-10 1.2E-14 131.1 21.8 145 502-670 144-290 (967)
263 KOG0280 Uncharacterized conser 99.2 1.9E-10 4.1E-15 118.0 15.3 198 555-752 124-335 (339)
264 TIGR02658 TTQ_MADH_Hv methylam 99.2 4.4E-08 9.5E-13 107.7 34.1 234 560-803 53-338 (352)
265 PRK04043 tolB translocation pr 99.2 1.1E-08 2.3E-13 116.5 30.5 228 574-813 169-418 (419)
266 KOG1354 Serine/threonine prote 99.2 2.2E-09 4.8E-14 112.1 21.3 239 499-753 33-362 (433)
267 TIGR03300 assembly_YfgL outer 99.2 1.8E-08 3.9E-13 113.6 30.6 252 564-834 65-336 (377)
268 COG4946 Uncharacterized protei 99.2 2.2E-08 4.8E-13 108.4 29.1 281 531-825 206-507 (668)
269 KOG0309 Conserved WD40 repeat- 99.2 2E-10 4.4E-15 129.3 13.6 279 552-833 24-336 (1081)
270 KOG4547 WD40 repeat-containing 99.2 2.8E-09 6.1E-14 118.8 22.3 188 604-796 3-221 (541)
271 COG5354 Uncharacterized protei 99.2 5.5E-09 1.2E-13 114.3 23.9 271 551-834 31-346 (561)
272 KOG2314 Translation initiation 99.2 7.5E-09 1.6E-13 114.0 25.0 270 556-834 214-523 (698)
273 KOG1409 Uncharacterized conser 99.1 2.4E-09 5.1E-14 112.1 18.8 279 500-796 33-395 (404)
274 PLN02919 haloacid dehalogenase 99.1 3.3E-08 7.1E-13 124.2 32.1 233 598-834 571-886 (1057)
275 COG5170 CDC55 Serine/threonine 99.1 1.3E-09 2.8E-14 112.3 15.8 239 552-794 26-366 (460)
276 PLN02919 haloacid dehalogenase 99.1 5.7E-08 1.2E-12 122.0 33.8 238 556-799 571-892 (1057)
277 PRK04043 tolB translocation pr 99.1 3.1E-08 6.6E-13 112.8 28.6 201 616-827 169-388 (419)
278 KOG2041 WD40 repeat protein [G 99.1 2.5E-08 5.4E-13 112.3 26.7 306 503-830 26-402 (1189)
279 PF04762 IKI3: IKI3 family; I 99.1 6.7E-08 1.5E-12 119.3 33.1 280 550-834 73-454 (928)
280 KOG0280 Uncharacterized conser 99.0 1.6E-08 3.5E-13 104.0 19.3 242 552-794 69-332 (339)
281 KOG1912 WD40 repeat protein [G 99.0 6.8E-08 1.5E-12 110.0 24.7 211 540-751 43-305 (1062)
282 COG4946 Uncharacterized protei 99.0 1.4E-07 3E-12 102.4 25.8 275 549-834 356-652 (668)
283 PF08450 SGL: SMP-30/Gluconola 99.0 1.3E-06 2.7E-11 92.5 32.0 217 598-824 3-243 (246)
284 KOG1912 WD40 repeat protein [G 99.0 2.9E-08 6.2E-13 113.0 20.0 239 552-796 15-305 (1062)
285 PF08450 SGL: SMP-30/Gluconola 99.0 2.1E-06 4.6E-11 90.8 33.1 217 557-784 4-244 (246)
286 KOG1064 RAVE (regulator of V-A 98.9 3.4E-09 7.3E-14 129.3 12.0 209 607-834 2181-2396(2439)
287 KOG4532 WD40-like repeat conta 98.9 9.9E-08 2.2E-12 97.1 20.6 248 573-827 51-323 (344)
288 KOG1064 RAVE (regulator of V-A 98.9 4.1E-09 8.9E-14 128.6 12.1 190 547-752 2203-2400(2439)
289 KOG0882 Cyclophilin-related pe 98.9 8.1E-09 1.8E-13 111.3 12.9 277 500-807 17-317 (558)
290 PF13360 PQQ_2: PQQ-like domai 98.9 8.2E-07 1.8E-11 92.9 27.6 216 573-800 2-235 (238)
291 PF04762 IKI3: IKI3 family; I 98.9 9.9E-07 2.2E-11 109.1 32.0 275 554-833 23-376 (928)
292 PRK11138 outer membrane biogen 98.9 9.4E-07 2E-11 100.3 29.2 255 564-834 120-392 (394)
293 KOG0309 Conserved WD40 repeat- 98.9 6.8E-09 1.5E-13 117.2 10.7 207 545-751 107-340 (1081)
294 KOG3914 WD repeat protein WDR4 98.8 5E-08 1.1E-12 104.5 14.8 163 500-678 71-233 (390)
295 KOG4190 Uncharacterized conser 98.8 1.4E-08 3E-13 111.2 10.4 206 587-799 728-952 (1034)
296 KOG1832 HIV-1 Vpr-binding prot 98.8 2.8E-09 6E-14 122.1 5.2 265 541-825 1090-1378(1516)
297 PF07433 DUF1513: Protein of u 98.8 6.4E-06 1.4E-10 87.9 28.3 244 555-826 7-276 (305)
298 PF00930 DPPIV_N: Dipeptidyl p 98.8 4.2E-06 9.1E-11 93.6 28.3 259 561-825 1-346 (353)
299 PRK11138 outer membrane biogen 98.8 2.1E-06 4.5E-11 97.5 26.0 255 564-834 69-351 (394)
300 PF13360 PQQ_2: PQQ-like domai 98.7 3.7E-06 8E-11 87.9 25.3 211 615-834 2-228 (238)
301 KOG4532 WD40-like repeat conta 98.7 2.1E-06 4.5E-11 87.7 20.9 243 491-752 72-333 (344)
302 KOG4714 Nucleoporin [Nuclear s 98.7 2.4E-07 5.3E-12 94.0 13.9 200 503-710 47-255 (319)
303 PF15492 Nbas_N: Neuroblastoma 98.7 6.6E-06 1.4E-10 85.4 24.3 227 558-800 3-264 (282)
304 KOG1645 RING-finger-containing 98.7 2.2E-06 4.8E-11 91.9 20.2 250 576-834 175-459 (463)
305 COG5170 CDC55 Serine/threonine 98.6 1.8E-07 3.8E-12 96.8 10.8 234 593-834 25-307 (460)
306 KOG1920 IkappaB kinase complex 98.6 7.4E-06 1.6E-10 98.5 25.3 244 552-800 68-327 (1265)
307 PRK02888 nitrous-oxide reducta 98.6 9.9E-06 2.1E-10 93.7 25.2 179 645-825 200-450 (635)
308 KOG1645 RING-finger-containing 98.6 2E-06 4.3E-11 92.2 17.1 245 544-795 185-461 (463)
309 KOG4714 Nucleoporin [Nuclear s 98.5 9.9E-07 2.1E-11 89.7 13.2 195 555-751 39-255 (319)
310 KOG3914 WD repeat protein WDR4 98.5 2E-06 4.4E-11 92.4 16.1 156 597-753 65-226 (390)
311 KOG1832 HIV-1 Vpr-binding prot 98.5 4.5E-08 9.7E-13 112.5 3.9 200 584-800 1091-1296(1516)
312 KOG0882 Cyclophilin-related pe 98.5 8.8E-07 1.9E-11 95.9 13.1 207 592-800 7-236 (558)
313 PF02897 Peptidase_S9_N: Proly 98.5 0.00024 5.3E-09 81.2 34.3 243 555-802 126-411 (414)
314 KOG2066 Vacuolar assembly/sort 98.5 3.1E-06 6.7E-11 97.8 18.1 183 594-796 39-234 (846)
315 PF04053 Coatomer_WDAD: Coatom 98.5 1.2E-05 2.6E-10 91.6 22.3 222 592-833 30-259 (443)
316 KOG1275 PAB-dependent poly(A) 98.5 4.2E-06 9.1E-11 97.5 18.1 175 652-834 149-340 (1118)
317 PF14583 Pectate_lyase22: Olig 98.5 0.00043 9.4E-09 76.2 32.2 269 558-833 41-378 (386)
318 COG3391 Uncharacterized conser 98.5 0.00021 4.5E-09 80.8 31.0 251 576-832 13-279 (381)
319 KOG1275 PAB-dependent poly(A) 98.5 3E-06 6.5E-11 98.7 16.0 180 563-748 146-340 (1118)
320 PF15492 Nbas_N: Neuroblastoma 98.4 0.00011 2.4E-09 76.5 25.5 187 555-752 46-261 (282)
321 KOG2695 WD40 repeat protein [G 98.4 5.7E-07 1.2E-11 94.6 8.8 170 644-815 218-401 (425)
322 cd00216 PQQ_DH Dehydrogenases 98.4 7.8E-05 1.7E-09 87.1 27.8 259 564-834 61-422 (488)
323 KOG2066 Vacuolar assembly/sort 98.4 6.6E-06 1.4E-10 95.1 17.4 183 552-751 39-234 (846)
324 PF08513 LisH: LisH; InterPro 98.4 2.6E-07 5.7E-12 61.9 3.7 27 10-36 1-27 (27)
325 PF06433 Me-amine-dh_H: Methyl 98.4 0.00023 4.9E-09 77.1 27.4 256 574-834 17-318 (342)
326 COG0823 TolB Periplasmic compo 98.4 2.6E-05 5.6E-10 88.7 21.5 205 575-787 174-391 (425)
327 KOG2114 Vacuolar assembly/sort 98.4 4.6E-05 1E-09 88.9 23.4 207 601-812 30-262 (933)
328 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00044 9.5E-09 70.9 27.6 258 563-834 62-349 (354)
329 cd00216 PQQ_DH Dehydrogenases 98.4 0.00033 7.2E-09 81.8 30.9 228 565-800 111-429 (488)
330 PF07433 DUF1513: Protein of u 98.3 0.00019 4.1E-09 76.8 23.9 193 639-834 6-245 (305)
331 PF11768 DUF3312: Protein of u 98.3 0.00091 2E-08 76.1 30.4 90 743-834 237-327 (545)
332 PF08596 Lgl_C: Lethal giant l 98.3 0.0001 2.2E-09 83.1 23.1 261 554-827 3-327 (395)
333 KOG3621 WD40 repeat-containing 98.3 8.7E-05 1.9E-09 85.2 22.3 273 551-832 32-349 (726)
334 COG0823 TolB Periplasmic compo 98.3 2.9E-05 6.2E-10 88.3 18.7 189 630-823 185-386 (425)
335 KOG2114 Vacuolar assembly/sort 98.3 0.00037 8.1E-09 81.6 26.6 195 554-752 27-245 (933)
336 PF00400 WD40: WD domain, G-be 98.3 3.5E-06 7.5E-11 61.8 6.8 38 543-580 2-39 (39)
337 KOG2695 WD40 repeat protein [G 98.2 3.7E-06 8E-11 88.6 9.1 158 558-719 217-386 (425)
338 KOG3617 WD40 and TPR repeat-co 98.2 2.1E-05 4.5E-10 90.8 15.2 255 555-834 62-331 (1416)
339 KOG1920 IkappaB kinase complex 98.2 0.00025 5.5E-09 85.7 24.5 227 593-833 67-319 (1265)
340 PF00400 WD40: WD domain, G-be 98.2 4.2E-06 9.2E-11 61.4 6.3 39 584-622 1-39 (39)
341 PRK02888 nitrous-oxide reducta 98.2 0.00013 2.8E-09 84.7 21.2 215 560-784 200-450 (635)
342 PF04053 Coatomer_WDAD: Coatom 98.1 0.0004 8.6E-09 79.4 23.8 221 550-795 30-262 (443)
343 COG3391 Uncharacterized conser 98.1 0.00076 1.6E-08 76.3 25.7 220 555-777 76-310 (381)
344 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.0016 3.5E-08 72.8 27.8 229 552-785 42-347 (353)
345 PF00780 CNH: CNH domain; Int 98.1 0.0027 5.8E-08 68.2 28.3 225 562-802 5-262 (275)
346 PF06433 Me-amine-dh_H: Methyl 98.1 0.0028 6.1E-08 68.7 27.6 239 557-804 40-329 (342)
347 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.00042 9.1E-09 71.0 19.9 151 643-797 16-167 (354)
348 PF06977 SdiA-regulated: SdiA- 98.1 0.0021 4.6E-08 67.7 26.0 200 545-747 14-247 (248)
349 PF11768 DUF3312: Protein of u 98.1 0.00047 1E-08 78.3 22.2 133 618-752 186-331 (545)
350 PF06977 SdiA-regulated: SdiA- 98.0 0.0016 3.5E-08 68.6 24.1 199 632-833 16-247 (248)
351 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.0046 1E-07 72.8 30.2 187 564-754 69-337 (527)
352 PF03178 CPSF_A: CPSF A subuni 98.0 0.0011 2.4E-08 73.1 23.1 209 617-832 3-261 (321)
353 PF03178 CPSF_A: CPSF A subuni 98.0 0.0029 6.3E-08 69.8 25.9 214 574-792 2-262 (321)
354 KOG1008 Uncharacterized conser 97.9 5.2E-06 1.1E-10 93.6 3.4 198 552-751 56-276 (783)
355 PF08596 Lgl_C: Lethal giant l 97.9 0.0012 2.5E-08 74.6 22.1 207 541-750 75-335 (395)
356 PF04841 Vps16_N: Vps16, N-ter 97.9 0.013 2.9E-07 66.8 31.0 209 558-778 34-272 (410)
357 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.023 4.9E-07 67.0 33.7 149 564-714 120-338 (527)
358 PF00780 CNH: CNH domain; Int 97.9 0.0047 1E-07 66.3 25.2 216 604-834 5-253 (275)
359 PF02897 Peptidase_S9_N: Proly 97.9 0.0061 1.3E-07 69.7 27.4 221 596-819 125-383 (414)
360 KOG1008 Uncharacterized conser 97.9 5E-06 1.1E-10 93.8 1.4 197 595-795 57-275 (783)
361 COG3386 Gluconolactonase [Carb 97.8 0.0096 2.1E-07 64.9 25.0 217 599-823 29-272 (307)
362 KOG3621 WD40 repeat-containing 97.8 0.0038 8.3E-08 72.1 22.4 148 500-669 42-198 (726)
363 PF14583 Pectate_lyase22: Olig 97.7 0.012 2.5E-07 65.2 24.4 242 580-827 16-303 (386)
364 PRK10115 protease 2; Provision 97.7 0.072 1.6E-06 64.9 33.8 238 555-800 129-399 (686)
365 PF08553 VID27: VID27 cytoplas 97.7 0.0054 1.2E-07 73.9 23.2 142 606-750 493-647 (794)
366 PF05694 SBP56: 56kDa selenium 97.6 0.027 5.8E-07 62.9 25.6 221 563-785 86-393 (461)
367 COG5276 Uncharacterized conser 97.6 0.14 3.1E-06 54.0 32.0 270 553-834 87-367 (370)
368 KOG1897 Damage-specific DNA bi 97.6 0.19 4.1E-06 60.7 33.1 272 553-832 584-894 (1096)
369 PRK13616 lipoprotein LpqB; Pro 97.5 0.013 2.9E-07 69.6 22.6 208 573-791 328-564 (591)
370 PF04841 Vps16_N: Vps16, N-ter 97.4 0.038 8.3E-07 63.1 25.2 188 617-819 62-272 (410)
371 KOG3617 WD40 and TPR repeat-co 97.4 0.00047 1E-08 80.1 9.3 109 641-751 19-132 (1416)
372 COG3386 Gluconolactonase [Carb 97.4 0.051 1.1E-06 59.3 24.7 183 555-740 68-274 (307)
373 KOG4640 Anaphase-promoting com 97.4 0.00064 1.4E-08 77.4 10.0 95 552-647 20-115 (665)
374 KOG4499 Ca2+-binding protein R 97.3 0.036 7.9E-07 56.5 20.4 208 606-816 27-263 (310)
375 COG3490 Uncharacterized protei 97.3 0.035 7.5E-07 58.2 20.5 231 556-793 71-346 (366)
376 PF05096 Glu_cyclase_2: Glutam 97.3 0.14 3.1E-06 54.0 25.0 194 585-786 34-251 (264)
377 PRK13616 lipoprotein LpqB; Pro 97.3 0.026 5.7E-07 67.1 21.7 187 636-831 348-563 (591)
378 KOG4441 Proteins containing BT 97.2 0.015 3.2E-07 69.1 19.6 230 563-800 284-551 (571)
379 PRK10115 protease 2; Provision 97.2 0.29 6.2E-06 59.7 31.0 200 595-802 127-353 (686)
380 PF08553 VID27: VID27 cytoplas 97.2 0.019 4.1E-07 69.4 20.2 138 653-794 497-646 (794)
381 KOG1897 Damage-specific DNA bi 97.2 1 2.2E-05 54.7 33.1 271 552-832 629-938 (1096)
382 PRK13684 Ycf48-like protein; P 97.2 0.45 9.7E-06 52.8 29.2 269 552-834 45-329 (334)
383 KOG4441 Proteins containing BT 97.1 0.021 4.6E-07 67.8 18.8 208 616-829 301-534 (571)
384 PHA02713 hypothetical protein; 97.1 0.04 8.7E-07 65.5 20.8 217 575-801 273-539 (557)
385 PF15390 DUF4613: Domain of un 97.1 0.11 2.4E-06 59.5 22.8 145 553-698 57-220 (671)
386 PF10647 Gmad1: Lipoprotein Lp 97.0 0.18 3.9E-06 53.7 23.3 187 639-825 25-227 (253)
387 smart00667 LisH Lissencephaly 97.0 0.0011 2.3E-08 46.9 4.2 31 9-39 3-33 (34)
388 PF14870 PSII_BNR: Photosynthe 97.0 0.64 1.4E-05 50.6 27.3 268 552-833 16-301 (302)
389 smart00320 WD40 WD40 repeats. 97.0 0.0019 4.2E-08 44.8 5.4 37 544-580 4-40 (40)
390 PF14727 PHTB1_N: PTHB1 N-term 97.0 1.1 2.3E-05 51.0 31.5 261 564-832 37-356 (418)
391 PF05096 Glu_cyclase_2: Glutam 96.9 0.68 1.5E-05 49.0 25.9 179 638-824 45-249 (264)
392 COG3490 Uncharacterized protei 96.9 0.07 1.5E-06 56.0 17.9 169 646-826 44-245 (366)
393 smart00320 WD40 WD40 repeats. 96.9 0.003 6.4E-08 43.8 5.9 39 584-622 2-40 (40)
394 PF14783 BBS2_Mid: Ciliary BBS 96.9 0.032 7E-07 50.8 13.6 101 555-663 2-109 (111)
395 PF07995 GSDH: Glucose / Sorbo 96.9 0.74 1.6E-05 51.1 27.6 232 555-790 4-330 (331)
396 KOG2395 Protein involved in va 96.9 0.027 5.8E-07 63.4 15.5 134 691-827 345-492 (644)
397 COG3204 Uncharacterized protei 96.8 0.17 3.6E-06 53.7 20.3 190 633-823 81-300 (316)
398 COG3204 Uncharacterized protei 96.8 0.38 8.1E-06 51.1 22.3 163 548-711 81-265 (316)
399 KOG4640 Anaphase-promoting com 96.8 0.0055 1.2E-07 70.1 9.5 93 594-689 20-115 (665)
400 COG5276 Uncharacterized conser 96.7 0.75 1.6E-05 48.8 24.0 194 593-796 85-286 (370)
401 KOG2395 Protein involved in va 96.7 0.039 8.4E-07 62.2 15.2 142 648-794 344-499 (644)
402 PF14655 RAB3GAP2_N: Rab3 GTPa 96.7 0.34 7.5E-06 54.9 23.1 88 557-646 6-117 (415)
403 KOG2444 WD40 repeat protein [G 96.7 0.0019 4.2E-08 65.5 4.5 141 608-752 32-179 (238)
404 PHA02713 hypothetical protein; 96.6 0.13 2.9E-06 61.1 20.0 172 650-828 304-523 (557)
405 KOG4499 Ca2+-binding protein R 96.6 0.22 4.7E-06 51.0 18.2 163 566-731 73-263 (310)
406 PF07995 GSDH: Glucose / Sorbo 96.5 1.1 2.5E-05 49.6 25.9 231 596-831 3-330 (331)
407 TIGR03118 PEPCTERM_chp_1 conse 96.5 0.89 1.9E-05 48.7 23.1 197 555-752 25-281 (336)
408 PF14870 PSII_BNR: Photosynthe 96.5 0.45 9.8E-06 51.8 21.8 186 555-747 106-301 (302)
409 PLN00033 photosystem II stabil 96.5 2.2 4.8E-05 48.4 34.9 146 683-833 242-396 (398)
410 PF14783 BBS2_Mid: Ciliary BBS 96.4 0.15 3.3E-06 46.5 14.8 100 640-745 2-109 (111)
411 COG1520 FOG: WD40-like repeat 96.4 2.2 4.8E-05 47.9 29.6 195 561-763 66-278 (370)
412 TIGR03074 PQQ_membr_DH membran 96.4 0.77 1.7E-05 56.4 25.6 225 564-800 194-482 (764)
413 PF02333 Phytase: Phytase; In 96.4 0.84 1.8E-05 51.0 23.5 188 562-752 66-292 (381)
414 PF05694 SBP56: 56kDa selenium 96.4 2.5 5.5E-05 47.6 30.7 220 605-825 86-392 (461)
415 COG4257 Vgb Streptogramin lyas 96.2 1.6 3.6E-05 45.9 22.7 243 555-803 64-313 (353)
416 PF10647 Gmad1: Lipoprotein Lp 96.1 1.2 2.7E-05 47.2 22.3 140 596-740 25-184 (253)
417 TIGR02604 Piru_Ver_Nterm putat 96.1 2.4 5.2E-05 47.7 25.7 144 553-698 14-202 (367)
418 PHA03098 kelch-like protein; P 96.0 0.26 5.6E-06 58.4 18.1 157 650-812 343-528 (534)
419 PF15390 DUF4613: Domain of un 95.9 0.35 7.7E-06 55.6 17.3 171 638-817 20-213 (671)
420 KOG2079 Vacuolar assembly/sort 95.8 0.13 2.8E-06 62.5 14.2 101 563-667 98-202 (1206)
421 TIGR03074 PQQ_membr_DH membran 95.7 1.2 2.6E-05 54.7 22.6 67 652-718 262-353 (764)
422 PRK13684 Ycf48-like protein; P 95.7 1.2 2.7E-05 49.3 21.0 150 594-749 172-330 (334)
423 PLN02153 epithiospecifier prot 95.7 1.1 2.5E-05 49.6 20.8 175 650-827 86-324 (341)
424 PF14655 RAB3GAP2_N: Rab3 GTPa 95.7 2 4.4E-05 48.8 22.5 72 681-752 309-400 (415)
425 KOG2377 Uncharacterized conser 95.6 2.6 5.6E-05 47.3 22.0 120 551-672 65-189 (657)
426 KOG2079 Vacuolar assembly/sort 95.5 0.092 2E-06 63.7 11.7 71 551-623 129-202 (1206)
427 TIGR02604 Piru_Ver_Nterm putat 95.5 0.4 8.6E-06 54.0 16.6 146 680-827 14-204 (367)
428 PF10214 Rrn6: RNA polymerase 95.5 6.3 0.00014 48.9 28.0 177 592-796 77-277 (765)
429 PHA03098 kelch-like protein; P 95.4 0.47 1E-05 56.2 17.3 184 562-752 293-513 (534)
430 PF03022 MRJP: Major royal jel 95.4 3.9 8.5E-05 44.3 22.9 165 661-825 35-254 (287)
431 COG4257 Vgb Streptogramin lyas 95.3 2.9 6.2E-05 44.2 20.1 208 597-819 64-288 (353)
432 KOG2444 WD40 repeat protein [G 95.2 0.04 8.6E-07 56.2 6.2 138 569-709 35-177 (238)
433 KOG3630 Nuclear pore complex, 95.2 0.16 3.5E-06 62.0 12.1 144 596-740 102-262 (1405)
434 PF10168 Nup88: Nuclear pore c 95.1 1.3 2.8E-05 53.9 19.7 27 552-578 84-110 (717)
435 PF10433 MMS1_N: Mono-function 94.9 11 0.00023 44.4 27.5 246 561-816 219-503 (504)
436 COG1520 FOG: WD40-like repeat 94.8 8.7 0.00019 43.1 28.9 187 607-800 69-273 (370)
437 PF10168 Nup88: Nuclear pore c 94.8 3.4 7.3E-05 50.5 22.3 94 595-711 85-181 (717)
438 KOG1898 Splicing factor 3b, su 94.8 15 0.00032 45.6 29.2 163 662-832 855-1044(1205)
439 PRK10350 hypothetical protein; 94.6 0.13 2.7E-06 47.0 7.2 28 68-95 21-49 (145)
440 PF10214 Rrn6: RNA polymerase 94.5 17 0.00036 45.2 28.0 158 550-710 77-277 (765)
441 PLN00033 photosystem II stabil 94.5 11 0.00024 42.9 30.6 110 679-792 280-396 (398)
442 PHA02790 Kelch-like protein; P 94.5 1 2.2E-05 52.7 16.4 140 563-712 271-426 (480)
443 PF12234 Rav1p_C: RAVE protein 94.4 1.4 3E-05 52.4 17.1 123 543-668 20-156 (631)
444 KOG1896 mRNA cleavage and poly 94.3 16 0.00034 46.0 25.7 169 660-833 1004-1210(1366)
445 PLN02153 epithiospecifier prot 94.3 4.9 0.00011 44.6 20.8 145 563-712 32-228 (341)
446 PF12894 Apc4_WD40: Anaphase-p 94.2 0.13 2.8E-06 39.5 5.5 33 552-585 11-43 (47)
447 PF10395 Utp8: Utp8 family; I 94.1 11 0.00023 45.2 23.5 197 601-800 34-264 (670)
448 KOG2280 Vacuolar assembly/sort 94.1 5.8 0.00013 47.3 20.8 195 574-777 64-271 (829)
449 PLN02193 nitrile-specifier pro 94.0 8 0.00017 45.1 22.5 192 605-802 175-417 (470)
450 TIGR03548 mutarot_permut cycli 94.0 7.5 0.00016 42.7 21.4 101 650-752 73-196 (323)
451 COG3292 Predicted periplasmic 93.9 3.1 6.8E-05 48.0 17.8 268 552-832 164-443 (671)
452 PHA02790 Kelch-like protein; P 93.8 3.2 6.9E-05 48.6 18.9 144 650-800 319-475 (480)
453 PRK14131 N-acetylneuraminic ac 93.8 6.6 0.00014 44.3 21.0 24 605-628 84-118 (376)
454 PF11498 Activator_LAG-3: Tran 93.7 0.019 4.1E-07 60.9 0.0 14 121-134 371-384 (468)
455 PF12234 Rav1p_C: RAVE protein 93.6 1.4 3.1E-05 52.3 15.3 72 595-667 30-103 (631)
456 KOG1916 Nuclear protein, conta 93.6 0.048 1E-06 64.7 3.0 96 573-670 110-215 (1283)
457 TIGR03548 mutarot_permut cycli 93.5 5.8 0.00013 43.6 19.5 108 563-673 72-199 (323)
458 PF14781 BBS2_N: Ciliary BBSom 93.5 2.6 5.6E-05 39.9 13.6 119 598-717 2-133 (136)
459 PLN02193 nitrile-specifier pro 93.4 20 0.00043 41.8 29.0 174 650-827 176-387 (470)
460 KOG1916 Nuclear protein, conta 93.2 0.065 1.4E-06 63.7 3.3 163 547-714 127-328 (1283)
461 PF10433 MMS1_N: Mono-function 93.0 15 0.00034 43.1 22.9 226 603-833 219-473 (504)
462 COG3823 Glutamine cyclotransfe 92.9 3.7 8.1E-05 41.7 14.6 176 605-784 55-247 (262)
463 TIGR03547 muta_rot_YjhT mutatr 92.9 11 0.00024 41.7 20.7 40 788-827 291-331 (346)
464 KOG3630 Nuclear pore complex, 92.9 0.82 1.8E-05 56.2 11.7 141 681-824 102-261 (1405)
465 TIGR01063 gyrA DNA gyrase, A s 92.9 32 0.0007 42.9 27.7 264 555-823 487-794 (800)
466 COG3823 Glutamine cyclotransfe 92.8 3.6 7.9E-05 41.7 14.4 170 650-824 56-247 (262)
467 COG5167 VID27 Protein involved 92.8 1.3 2.9E-05 50.1 12.5 142 648-795 478-632 (776)
468 PF12894 Apc4_WD40: Anaphase-p 92.8 0.32 7E-06 37.3 5.6 31 594-624 11-41 (47)
469 PF14781 BBS2_N: Ciliary BBSom 92.7 3.1 6.8E-05 39.3 13.0 111 685-800 4-130 (136)
470 KOG2247 WD40 repeat-containing 92.7 0.033 7.2E-07 62.2 0.0 148 597-747 37-185 (615)
471 PF08728 CRT10: CRT10; InterP 92.6 3.6 7.7E-05 49.6 16.5 101 649-749 113-245 (717)
472 KOG2377 Uncharacterized conser 92.5 9.4 0.0002 43.0 18.3 151 557-711 27-187 (657)
473 PF14761 HPS3_N: Hermansky-Pud 92.5 5 0.00011 41.1 15.3 141 607-750 29-214 (215)
474 PRK05560 DNA gyrase subunit A; 92.4 28 0.00061 43.4 24.7 227 603-832 495-768 (805)
475 TIGR03547 muta_rot_YjhT mutatr 92.3 21 0.00046 39.5 22.0 40 660-699 168-209 (346)
476 PRK05560 DNA gyrase subunit A; 92.2 38 0.00083 42.3 28.6 255 559-817 493-792 (805)
477 smart00036 CNH Domain found in 91.9 22 0.00048 38.8 30.4 234 563-805 12-280 (302)
478 COG1506 DAP2 Dipeptidyl aminop 91.7 37 0.00081 41.1 28.5 149 548-699 55-235 (620)
479 PF13449 Phytase-like: Esteras 91.7 25 0.00053 38.9 23.1 144 594-739 19-232 (326)
480 PF14727 PHTB1_N: PTHB1 N-term 91.5 30 0.00065 39.6 29.5 268 503-797 37-362 (418)
481 COG1506 DAP2 Dipeptidyl aminop 91.5 31 0.00066 41.8 23.4 146 590-740 55-234 (620)
482 COG1770 PtrB Protease II [Amin 91.4 37 0.0008 40.5 24.7 200 596-800 130-353 (682)
483 COG5290 IkappaB kinase complex 91.3 5.7 0.00012 47.4 15.7 103 683-789 250-360 (1243)
484 COG5167 VID27 Protein involved 91.2 2.2 4.9E-05 48.3 11.9 143 605-751 478-633 (776)
485 TIGR03606 non_repeat_PQQ dehyd 91.1 34 0.00074 39.5 31.8 55 552-606 29-90 (454)
486 PRK14131 N-acetylneuraminic ac 91.1 17 0.00037 41.0 19.6 39 789-827 314-353 (376)
487 PF13449 Phytase-like: Esteras 91.0 28 0.00061 38.4 23.0 143 638-782 20-231 (326)
488 KOG2280 Vacuolar assembly/sort 91.0 6.1 0.00013 47.1 15.7 170 660-832 64-242 (829)
489 TIGR03118 PEPCTERM_chp_1 conse 90.9 26 0.00057 37.9 21.3 194 639-834 24-277 (336)
490 KOG1983 Tomosyn and related SN 90.6 6.8 0.00015 49.8 17.0 229 553-799 36-268 (993)
491 PF11498 Activator_LAG-3: Tran 90.5 0.077 1.7E-06 56.5 0.0 6 49-54 276-281 (468)
492 PRK13613 lipoprotein LpqB; Pro 90.5 43 0.00094 40.2 22.8 190 639-830 364-576 (599)
493 PF07569 Hira: TUP1-like enhan 90.4 1.5 3.3E-05 45.5 9.5 66 687-752 18-97 (219)
494 KOG2247 WD40 repeat-containing 90.4 0.032 7E-07 62.3 -3.0 141 682-829 37-181 (615)
495 PF02333 Phytase: Phytase; In 90.1 37 0.00081 38.2 23.6 181 650-834 68-288 (381)
496 KOG4369 RTK signaling protein 89.7 0.23 5E-06 60.4 2.9 89 86-174 1855-1986(2131)
497 PF14761 HPS3_N: Hermansky-Pud 89.7 25 0.00053 36.2 17.0 102 650-752 29-165 (215)
498 PF08801 Nucleoporin_N: Nup133 89.6 30 0.00066 39.6 20.3 30 767-796 191-220 (422)
499 PF10395 Utp8: Utp8 family; I 89.5 56 0.0012 39.3 25.5 239 555-795 30-305 (670)
500 PF08728 CRT10: CRT10; InterP 88.8 8.8 0.00019 46.3 15.1 142 692-834 49-244 (717)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.7e-44 Score=369.96 Aligned_cols=306 Identities=24% Similarity=0.392 Sum_probs=276.4
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
..+++|+.|.++++|+.... .+..+.++|...|.|++|+|||+.||+|+.||.|++||.++
T Consensus 128 ~~l~tGsGD~TvR~WD~~Te-------------------Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 128 SRLVTGSGDTTVRLWDLDTE-------------------TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKT 188 (480)
T ss_pred ceEEecCCCceEEeeccCCC-------------------CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCC
Confidence 67899999999999955433 34678899999999999999999999999999999999999
Q ss_pred CeEE-EEeccCCCCeEEEEECC-----CCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEe
Q 003279 584 FTVK-STLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 657 (834)
Q Consensus 584 ~~~~-~~l~~h~~~I~~l~fsp-----dg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs 657 (834)
++.+ ..+.+|...|++++|.| ..++||+++.||.|+|||+..+. ++..+.+|+.+|+|++|-- ..++++++
T Consensus 189 g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~VTCvrwGG--~gliySgS 265 (480)
T KOG0271|consen 189 GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTASVTCVRWGG--EGLIYSGS 265 (480)
T ss_pred CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccceEEEEEcC--CceEEecC
Confidence 8876 77899999999999976 56799999999999999999755 5889999999999999974 55999999
Q ss_pred CCCcEEEEECCCCceeeEeecC-CCeeEEEEe-----------cCCC-------------------------EEEEEEcC
Q 003279 658 NNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQ-----------PRLG-------------------------RILAAAIE 700 (834)
Q Consensus 658 ~Dg~I~lwDl~s~~~i~~~~~~-~~i~~l~~s-----------p~g~-------------------------~ll~~s~d 700 (834)
.|++|++|+...|.+.+.++.+ ..|+.++.+ |.++ .+++|+.|
T Consensus 266 ~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd 345 (480)
T KOG0271|consen 266 QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD 345 (480)
T ss_pred CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence 9999999999999998888754 346666555 3333 49999999
Q ss_pred CeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 003279 701 NYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 778 (834)
Q Consensus 701 g~I~iwDl~t~-~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~ 778 (834)
.++.+|+.... +++....+|...|+.+.||||+++|++++ |..|++||-+++ +.+..+.+|-..|+.++|+.|.+
T Consensus 346 ~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG---k~lasfRGHv~~VYqvawsaDsR 422 (480)
T KOG0271|consen 346 FTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG---KFLASFRGHVAAVYQVAWSADSR 422 (480)
T ss_pred ceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc---chhhhhhhccceeEEEEeccCcc
Confidence 99999997654 68888999999999999999999999999 999999999999 88999999999999999999999
Q ss_pred EEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 779 SLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 779 ~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.|++++.|.++++||+++.++. .+.+|...|.++.|+|||..+++|+.|..++||.
T Consensus 423 LlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 423 LLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999887 7889999999999999999999999999999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-42 Score=356.82 Aligned_cols=289 Identities=24% Similarity=0.380 Sum_probs=265.8
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
..-..+.||.++|.|+.|+|+|+.||+|+.|.++++||+.+..+..+.++|...|.|++|+|||+.||+|+.||+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccC----CCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEE
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspd----g~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~ 697 (834)
..+++...+.+.+|...|++++|.|- ...+|++++.||.|+|||+..+.++..+.. ...|+|++|--+ ++|+++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySg 264 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSG 264 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEec
Confidence 99999888999999999999999873 234788999999999999999999988875 456999999755 789999
Q ss_pred EcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEc-----------CCCC-------------------------EEEEEe-
Q 003279 698 AIENYISILDVETQVCRLKLQGHKNQVHSVCWN-----------TSGE-------------------------YLASVS- 740 (834)
Q Consensus 698 s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~s-----------pdg~-------------------------~Lasgs- 740 (834)
+.|++|++|+...|.+...+++|...|+.++.+ |.++ .|++|+
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 999999999999999999999999999999887 2233 489999
Q ss_pred CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCC
Q 003279 741 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG 819 (834)
Q Consensus 741 Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~ 819 (834)
|.++.+|+-.... +++....+|...|+.+.|+||+++|++++.|..|++||.++|+.+ .+.+|-..|..++|+.|.+
T Consensus 345 d~tlflW~p~~~k--kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR 422 (480)
T KOG0271|consen 345 DFTLFLWNPFKSK--KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR 422 (480)
T ss_pred CceEEEecccccc--cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCcc
Confidence 7799999876542 678889999999999999999999999999999999999999988 7889999999999999999
Q ss_pred EEEEEecCCcEEEeC
Q 003279 820 MVASASHDKCVKIWK 834 (834)
Q Consensus 820 ~LaSgs~DG~I~IWd 834 (834)
+|++|+.|.++++||
T Consensus 423 LlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 423 LLVSGSKDSTLKVWD 437 (480)
T ss_pred EEEEcCCCceEEEEE
Confidence 999999999999996
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-40 Score=350.38 Aligned_cols=286 Identities=26% Similarity=0.427 Sum_probs=266.5
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCC--CCEEEEEeCCCeEEEE
Q 003279 544 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVW 621 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~IW 621 (834)
....--|-+.+|..|.|+.|++.||||+.+|.++||+..+...+.+|.+|...|.++.|+|. +..+|||+.||+|++|
T Consensus 167 l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw 246 (459)
T KOG0272|consen 167 LVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLW 246 (459)
T ss_pred hhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeee
Confidence 33444577889999999999999999999999999999999999999999999999999996 6689999999999999
Q ss_pred ecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcC
Q 003279 622 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 622 Dl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~d 700 (834)
++++.. ++..+.+|...|..++|+|+|. +|++++.|.+-++||++++..+.... |..+|.+++|+++|..+++|+.|
T Consensus 247 ~~~~e~-~l~~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD 324 (459)
T KOG0272|consen 247 KLSQET-PLQDLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLD 324 (459)
T ss_pred ccCCCc-chhhhhcchhhheeeeecCCCc-eeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCcc
Confidence 999754 5889999999999999999987 66699999999999999987766555 45679999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC-CCC
Q 003279 701 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TFP 778 (834)
Q Consensus 701 g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafsp-dg~ 778 (834)
..-+|||++++.++..+.+|...|.+|+|+|+|..|++|+ |++++|||++.. ..+..+..|.+.|+.|.|+| .|.
T Consensus 325 ~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---~~ly~ipAH~nlVS~Vk~~p~~g~ 401 (459)
T KOG0272|consen 325 SLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---SELYTIPAHSNLVSQVKYSPQEGY 401 (459)
T ss_pred chhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc---ccceecccccchhhheEecccCCe
Confidence 9999999999999999999999999999999999999999 999999999987 66889999999999999998 788
Q ss_pred EEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 779 SLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 779 ~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+|++++.|++++||...+..++ .+.+|++.|.++.+++|+.+|+|++.|.+|++|.
T Consensus 402 fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 402 FLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999988 7889999999999999999999999999999994
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.8e-38 Score=316.41 Aligned_cols=290 Identities=18% Similarity=0.322 Sum_probs=264.3
Q ss_pred eeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 003279 540 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 619 (834)
Q Consensus 540 ~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~ 619 (834)
..+...++|+||.++|.++.|++|.++|++++.||.+.|||.-+...+..++-...+|..++|+|.++++|+|+-|+.+.
T Consensus 43 i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 43 IQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred eeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeE
Confidence 34556689999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred EEecCCC--C---ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEec-CCC
Q 003279 620 VWDTENP--D---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQP-RLG 692 (834)
Q Consensus 620 IWDl~s~--~---~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp-~g~ 692 (834)
||++.+. + ...+.+.+|.+.+.|+.|.+|+ .|++++.|.++.+||+++++.+..|.. .+.|.++.++| +++
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred EEecccccccccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 9999864 2 2356789999999999999864 355899999999999999999999985 45699999999 999
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe--ecCCCceE
Q 003279 693 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL--SCTGNKFH 769 (834)
Q Consensus 693 ~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~--~~~~~~I~ 769 (834)
.|++|+.|+..++||++.+.++..|.+|...|++|+|.|+|.-+++|+ |++.++||++... .+..+ .....+|+
T Consensus 201 tFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~---~~a~ys~~~~~~git 277 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQ---ELAVYSHDSIICGIT 277 (343)
T ss_pred eEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCc---EEeeeccCcccCCce
Confidence 999999999999999999999999999999999999999999999999 8899999999873 34333 33456899
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 770 SCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 770 svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+++|+..|++|++|..|..+.+||.-.++.+ .+.+|++.|+|+..+|||..|+||+.|.+|+||.
T Consensus 278 Sv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 278 SVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999999999999998887777 8889999999999999999999999999999995
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.5e-38 Score=328.51 Aligned_cols=271 Identities=25% Similarity=0.370 Sum_probs=252.1
Q ss_pred ccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCC--CCEEEEEeCCCcE
Q 003279 499 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKA 576 (834)
Q Consensus 499 ~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpd--g~~Lasgs~Dg~I 576 (834)
+...+..+++||.++.+++|.++.. ..+.+|.||+..|.++.|+|. +..||+|+.||+|
T Consensus 183 fS~ds~~laT~swsG~~kvW~~~~~-------------------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtv 243 (459)
T KOG0272|consen 183 FSRDSKHLATGSWSGLVKVWSVPQC-------------------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTV 243 (459)
T ss_pred eecCCCeEEEeecCCceeEeecCCc-------------------ceeEEEeccccceeeEEEccCCCccceeeeccCCce
Confidence 3344578999999999999966543 457899999999999999996 6689999999999
Q ss_pred EEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEE
Q 003279 577 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 656 (834)
Q Consensus 577 ~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasg 656 (834)
++|++++..++..+.+|...|..++|+|+|++|+|++.|.+-++||+.++.. +....+|...|.+|+|++||. ++++|
T Consensus 244 klw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E-lL~QEGHs~~v~~iaf~~DGS-L~~tG 321 (459)
T KOG0272|consen 244 KLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE-LLLQEGHSKGVFSIAFQPDGS-LAATG 321 (459)
T ss_pred eeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh-hHhhcccccccceeEecCCCc-eeecc
Confidence 9999999999999999999999999999999999999999999999998664 677789999999999999987 88899
Q ss_pred eCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcC-CCC
Q 003279 657 DNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT-SGE 734 (834)
Q Consensus 657 s~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~sp-dg~ 734 (834)
+.|..-+|||++++.++..+.. ...|..+.|+|+|-.+++|+.|++++|||++...++..+.+|.+-|+.|+|+| .|.
T Consensus 322 GlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~ 401 (459)
T KOG0272|consen 322 GLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGY 401 (459)
T ss_pred CccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCe
Confidence 9999999999999999999885 56799999999999999999999999999999999999999999999999998 788
Q ss_pred EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003279 735 YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 793 (834)
Q Consensus 735 ~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwd 793 (834)
+|++++ |++++||..++. .++..+.+|.+.|.++.+++++.+|++++.|.++++|.
T Consensus 402 fL~TasyD~t~kiWs~~~~---~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 402 FLVTASYDNTVKIWSTRTW---SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEEcccCcceeeecCCCc---ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999 999999999888 78999999999999999999999999999999999995
No 6
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.6e-36 Score=303.23 Aligned_cols=289 Identities=23% Similarity=0.431 Sum_probs=264.2
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 621 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~-t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 621 (834)
.++..+.+|++.|+++.|+|+|.+||+|+.|..|.+|++. ..+...++++|.+.|..+.|.+|+..|++++.|++|+.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 3456778999999999999999999999999999999954 455667888999999999999999999999999999999
Q ss_pred ecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCC
Q 003279 622 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 701 (834)
Q Consensus 622 Dl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg 701 (834)
|+++++. ++.+.+|...|+.++-+.-|..++++++.||++++||+++..++.++.....++++.|...+..+++|+-|+
T Consensus 118 D~~tG~~-~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 118 DAETGKR-IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred eccccee-eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccC
Confidence 9999875 888999999999999877888899999999999999999999999998889999999999999999999999
Q ss_pred eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc-eeEEEeecCCC----ceEEEEEeC
Q 003279 702 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCTGN----KFHSCVFHP 775 (834)
Q Consensus 702 ~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~-~~i~~~~~~~~----~I~svafsp 775 (834)
.|++||++.......+.+|.+.|+.+..+++|.++.+-+ |.++++||++..... .++..+.++.. ....++|+|
T Consensus 197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp 276 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP 276 (338)
T ss_pred ceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC
Confidence 999999999999999999999999999999999999988 999999999865432 34666666543 346789999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 776 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 776 dg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
++.++.+|+.|..+++||......+ .+.+|.+.|.++.|+|...+|.+++.|.+|++
T Consensus 277 ~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 277 NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 9999999999999999999986666 88999999999999999999999999999976
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-34 Score=288.81 Aligned_cols=285 Identities=20% Similarity=0.326 Sum_probs=245.0
Q ss_pred eEEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEeCC-----CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 003279 543 TEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTE-----SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 616 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpd-g~~Lasgs~Dg~I~IWd~~-----t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg 616 (834)
....++++|++.|+.++..+. ...|++++.|.+|.+|++. .|.+++.+++|+..|..+..++|+.+.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 345688999999999999886 5688999999999999764 5777899999999999999999999999999999
Q ss_pred eEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec--CCCeeEEEEecC--CC
Q 003279 617 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPR--LG 692 (834)
Q Consensus 617 ~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~--~~~i~~l~~sp~--g~ 692 (834)
++++||+.++ ...+.|.+|...|.+++|++|+. -+++|+.|.+|++|++........... ..-|.|++|+|+ ..
T Consensus 86 ~lrlWDl~~g-~~t~~f~GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 86 TLRLWDLATG-ESTRRFVGHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred eEEEEEecCC-cEEEEEEecCCceEEEEecCCCc-eeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 9999999987 45889999999999999999966 566999999999999985443333333 345999999998 68
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003279 693 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 771 (834)
Q Consensus 693 ~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 771 (834)
+|+.++.|++|++||+++.+....+.+|.+.++.+++||||.+.++|+ ||.+.+||++.+ +.+..+. +...|.++
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~---k~lysl~-a~~~v~sl 239 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG---KNLYSLE-AFDIVNSL 239 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC---ceeEecc-CCCeEeeE
Confidence 899999999999999999999999999999999999999999999999 999999999988 5555544 67889999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCeEE-E----eccC-----CCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 772 VFHPTFPSLLVIGCYETLELWNMTENKTL-T----LSAH-----DKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 772 afspdg~~L~sgs~dg~I~Iwdl~~~~~~-~----l~~h-----~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+|+|+...|+.+ .+..|+|||+.++.++ . +.+. .-...+++|++||..|++|-.|+.|++|.
T Consensus 240 ~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 240 CFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred EecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 999997655554 4456999999998876 1 1122 23356789999999999999999999994
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.5e-34 Score=306.37 Aligned_cols=338 Identities=19% Similarity=0.321 Sum_probs=282.7
Q ss_pred CcccCCCcccCCCceEEeccCCCCeEEeecCCC------------------------------CCCCcccccccccCCCe
Q 003279 491 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDD------------------------------ADPRDRVGRSAEVGKGF 540 (834)
Q Consensus 491 ~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~------------------------------~~~~~~~~~~~~~~~g~ 540 (834)
.+......+.....++++|...++|++|..... .++++++++.+.+++|.
T Consensus 59 ~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~ 138 (603)
T KOG0318|consen 59 AHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGN 138 (603)
T ss_pred cceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCC
Confidence 444445555556679999999999999976652 24678888989889988
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 003279 541 TFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 619 (834)
Q Consensus 541 ~~~~~~~l~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~ 619 (834)
...+ +.||...|.+|+|-|... +++||++|++|.+|+-...+...++..|...|.|++|+|||.++++++.||+|.
T Consensus 139 SvGe---i~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~ 215 (603)
T KOG0318|consen 139 SVGE---ITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIY 215 (603)
T ss_pred ccce---eeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEE
Confidence 7555 569999999999999776 599999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCceeeeec---cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-------------------
Q 003279 620 VWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------------------- 677 (834)
Q Consensus 620 IWDl~s~~~~i~~~~---~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~------------------- 677 (834)
|||=.+++. +..+. +|.+.|.+++|+||+..++ +++.|.+++|||+.+.+++.++.
T Consensus 216 iyDGktge~-vg~l~~~~aHkGsIfalsWsPDs~~~~-T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~l 293 (603)
T KOG0318|consen 216 IYDGKTGEK-VGELEDSDAHKGSIFALSWSPDSTQFL-TVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHL 293 (603)
T ss_pred EEcCCCccE-EEEecCCCCccccEEEEEECCCCceEE-EecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeE
Confidence 999998775 55555 8999999999999988555 89999999999999887655332
Q ss_pred -------------------------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE-----------Ee---
Q 003279 678 -------------------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK-----------LQ--- 718 (834)
Q Consensus 678 -------------------------~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~-----------l~--- 718 (834)
|...|+++..++++.+|++++.||.|.-||..++..-.. +.
T Consensus 294 ItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~ 373 (603)
T KOG0318|consen 294 ITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE 373 (603)
T ss_pred EEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecC
Confidence 123578999999999999999999999999876432100 00
Q ss_pred ------------------------CC-------------------------------------------CCCEEEEEEcC
Q 003279 719 ------------------------GH-------------------------------------------KNQVHSVCWNT 731 (834)
Q Consensus 719 ------------------------~h-------------------------------------------~~~I~sl~~sp 731 (834)
.+ .....+++++|
T Consensus 374 ~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~ 453 (603)
T KOG0318|consen 374 SGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP 453 (603)
T ss_pred CCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC
Confidence 00 01235688899
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE--EeccCCCC
Q 003279 732 SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKL 808 (834)
Q Consensus 732 dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~--~l~~h~~~ 808 (834)
++.++++|+ |+.|+||.+..... ........|..+|++++|+||+.+|+++...+.+.+||+.+.+.. ...-|...
T Consensus 454 ~~~~vaVGG~Dgkvhvysl~g~~l-~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtak 532 (603)
T KOG0318|consen 454 DGSEVAVGGQDGKVHVYSLSGDEL-KEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAK 532 (603)
T ss_pred CCCEEEEecccceEEEEEecCCcc-cceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeee
Confidence 999999999 99999999987643 333455678999999999999999999999999999999998876 45569999
Q ss_pred eEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 809 VSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 809 V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
|.|++|+|+..++|||+-|-.|.||+
T Consensus 533 I~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 533 INCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred EEEEEeCCCceEEEeccccceEEEEE
Confidence 99999999999999999999999995
No 9
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1e-33 Score=297.81 Aligned_cols=284 Identities=32% Similarity=0.539 Sum_probs=255.0
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC
Q 003279 546 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 625 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s 625 (834)
..+.+|.++|++++|+|++++|++++.||.|++|++.+++....+..|...+.++.|++++++|++++.|+.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 46779999999999999999999999999999999999888888899999999999999999999999999999999997
Q ss_pred CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEE
Q 003279 626 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYIS 704 (834)
Q Consensus 626 ~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~ 704 (834)
.. .+..+..|...|.++.|++++ .++++++.|+.|++||+++++....+. +...+.++.|+|++.++++++.++.|+
T Consensus 83 ~~-~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 83 GE-CVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred cc-ceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 54 366777888899999999984 477778789999999999888887777 456799999999988887777799999
Q ss_pred EEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003279 705 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 783 (834)
Q Consensus 705 iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sg 783 (834)
+||+++++.+..+..|...|.+++|+|++..+++++ |+.|++||++.+ ..+..+..+...+.+++|++++.+++++
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---KCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC---ceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 999999988888888999999999999998888888 999999999886 5666676778899999999998877777
Q ss_pred EcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 784 GCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 784 s~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+.++.|++||+.+++.. .+..|...|.+++|++++.+|++++.||.|+|||
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77999999999987766 5668889999999999999999999999999997
No 10
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.3e-34 Score=325.35 Aligned_cols=286 Identities=30% Similarity=0.528 Sum_probs=257.2
Q ss_pred EEEecCC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--EEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 003279 545 FQLIPAS-TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 621 (834)
Q Consensus 545 ~~~l~gH-~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 621 (834)
...+.+| ...|.|+.|+++|++|++++.|+.|++|+..+.+ ....+.+|...|.+++|+|+++++++++.|++|+||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 4555554 8899999999999999999999999999998877 777888999999999999999999999999999999
Q ss_pred ecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcC
Q 003279 622 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 622 Dl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~d 700 (834)
|+......++++.+|...|++++|+|++ .++++|+.|++|+|||+++++++..+.. ...|.+++|++++.+|++++.|
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 9966666789999999999999999999 7889999999999999999999999986 4579999999999999999999
Q ss_pred CeEEEEECCCCe--EEEEEeCCCCC--EEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCC---ceEEEE
Q 003279 701 NYISILDVETQV--CRLKLQGHKNQ--VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN---KFHSCV 772 (834)
Q Consensus 701 g~I~iwDl~t~~--~~~~l~~h~~~--I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~---~I~sva 772 (834)
+.|++||+.++. +...+.++... +++++|+|++.+|+++. |+.+++||+..+ .++..+..|.. .+.+..
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~---~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG---KSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC---cceeeecccCCcceeEeccc
Confidence 999999999998 56777776665 99999999999999999 889999999988 66666666665 345556
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccC-CCCeEEEEEeCCCCEEEEEe--cCCcEEEeC
Q 003279 773 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASAS--HDKCVKIWK 834 (834)
Q Consensus 773 fspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h-~~~V~~lafspdg~~LaSgs--~DG~I~IWd 834 (834)
+++.+.++++++.|+.|++||+.++..+ .+.+| ...|..+.|++...++++++ .|+.|++|+
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 6889999999999999999999987766 77889 89999999999999999998 799999995
No 11
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.4e-34 Score=283.28 Aligned_cols=268 Identities=19% Similarity=0.397 Sum_probs=244.1
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc-eeeeeccCCCCeEEE
Q 003279 565 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSL 643 (834)
Q Consensus 565 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~-~i~~~~~h~~~V~sl 643 (834)
-+|+++++|.+|++|...+|.+..++....+-|+.+...|+++.||+++.- .|++||+++... ++.++.+|...|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEE
Confidence 479999999999999999999999999888899999999999999998754 699999998765 889999999999999
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC-CCC
Q 003279 644 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-HKN 722 (834)
Q Consensus 644 ~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~-h~~ 722 (834)
.|..+|+ .+++|++||+++|||++...+-+.+.+..+|+++..+|+-..|+++..+|.|++||+....+...+.. ...
T Consensus 90 gF~~dgr-WMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGR-WMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCe-EEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 9999976 67799999999999999999999999999999999999999999999999999999998876665543 456
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC---CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-
Q 003279 723 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGS---KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN- 797 (834)
Q Consensus 723 ~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~---~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~- 797 (834)
.|.++...|||.+|+++. .|..++|++-... ...++..+..|..-+..|.+||++++|++++.|.+++||+.++-
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 899999999999999988 8899999997643 34677788999999999999999999999999999999999887
Q ss_pred eE-EEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 798 KT-LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 798 ~~-~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+. +.+.+|...+++++||.||.||+||+.|+.+++|+
T Consensus 249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence 22 26779999999999999999999999999999997
No 12
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.1e-34 Score=298.78 Aligned_cols=289 Identities=20% Similarity=0.382 Sum_probs=265.3
Q ss_pred eeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 003279 540 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 619 (834)
Q Consensus 540 ~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~ 619 (834)
..++..+++.+|.+.|.|+++.|...+|++|+.|++|+|||+.+++...++.+|...|..+++++...||++++.|+.|+
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEE
Q 003279 620 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAA 698 (834)
Q Consensus 620 IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s 698 (834)
+||++..+. ++.+.+|-..|.|++.+|.-+ +|++|+.|.++++||+++...+..+. +...|..+.+.|....+++++
T Consensus 219 CwDLe~nkv-IR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S 296 (460)
T KOG0285|consen 219 CWDLEYNKV-IRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS 296 (460)
T ss_pred EEechhhhh-HHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec
Confidence 999998664 899999999999999999855 77799999999999999999999988 567799999999999999999
Q ss_pred cCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 003279 699 IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 778 (834)
Q Consensus 699 ~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~ 778 (834)
.|++|++||++.++....+..|...|.+++.+|....+++++.+.|+.|++..+ ..+..+.+|...|++++...|+
T Consensus 297 ~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g---~f~~nlsgh~~iintl~~nsD~- 372 (460)
T KOG0285|consen 297 HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEG---EFLQNLSGHNAIINTLSVNSDG- 372 (460)
T ss_pred CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCcc---chhhccccccceeeeeeeccCc-
Confidence 999999999999999999999999999999999999999999777999999988 6777789999999999998887
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEe---------ccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 779 SLLVIGCYETLELWNMTENKTLTL---------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 779 ~L~sgs~dg~I~Iwdl~~~~~~~l---------~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++++|+.+|.|.+||.+++-.... ...+..|.+.+|...|..|++|..|.+|++|+
T Consensus 373 v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 373 VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 588899999999999998865511 12356799999999999999999999999995
No 13
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.2e-33 Score=301.73 Aligned_cols=293 Identities=20% Similarity=0.345 Sum_probs=249.1
Q ss_pred CCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec---cCCCCeEEEEECCCCCEEEEEeC
Q 003279 538 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSA 614 (834)
Q Consensus 538 ~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~---~h~~~I~~l~fspdg~~Latgs~ 614 (834)
.|.+|+...+++.|..-|.|+.|+|||.++|+++.||+|.|||-.+++.+..+. +|.+.|.++.|+||++.|+|++.
T Consensus 176 eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa 255 (603)
T KOG0318|consen 176 EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA 255 (603)
T ss_pred eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC
Confidence 567788888999999999999999999999999999999999999999999997 89999999999999999999999
Q ss_pred CCeEEEEecCCCCc------------------------------------------eeeeeccCCCCeEEEEEccCCCcE
Q 003279 615 DRTVRVWDTENPDY------------------------------------------SLRTFTGHSTTVMSLDFHPSKEDL 652 (834)
Q Consensus 615 Dg~I~IWDl~s~~~------------------------------------------~i~~~~~h~~~V~sl~fspdg~~l 652 (834)
|++++|||+.+.+. ++..+.+|...|+++..++++. .
T Consensus 256 Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~-~ 334 (603)
T KOG0318|consen 256 DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK-T 334 (603)
T ss_pred CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCC-E
Confidence 99999999875431 2345668999999999999985 6
Q ss_pred EEEEeCCCcEEEEECCCCceee-------------------------------Ee-------------e-----------
Q 003279 653 LCSCDNNSEIRYWSINNGSCAG-------------------------------VF-------------K----------- 677 (834)
Q Consensus 653 lasgs~Dg~I~lwDl~s~~~i~-------------------------------~~-------------~----------- 677 (834)
|++|+.||.|.-||+.++..-+ .+ +
T Consensus 335 i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~ 414 (603)
T KOG0318|consen 335 IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVL 414 (603)
T ss_pred EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEc
Confidence 6699999999999987653210 00 0
Q ss_pred ---------------------------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEEeCCCCCEEEEE
Q 003279 678 ---------------------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVC 728 (834)
Q Consensus 678 ---------------------------~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~--~~~~l~~h~~~I~sl~ 728 (834)
..-...+++++|++..+++|+.|+.|+||.+.... ....+..|.++|++++
T Consensus 415 ~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~va 494 (603)
T KOG0318|consen 415 SDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVA 494 (603)
T ss_pred CCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEE
Confidence 00123578899999999999999999999998754 3345567999999999
Q ss_pred EcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeE-E-EeccC
Q 003279 729 WNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT-L-TLSAH 805 (834)
Q Consensus 729 ~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~-~-~l~~h 805 (834)
|+||+.||+++. .+.|.+||+.+.+. ......-|...|.+++|+|+..++++|+-|-.|.||+++.... + ...+|
T Consensus 495 ySpd~~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH 572 (603)
T KOG0318|consen 495 YSPDGAYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAH 572 (603)
T ss_pred ECCCCcEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEecccc
Confidence 999999999999 99999999998743 3444556899999999999999999999999999999987433 2 44589
Q ss_pred CCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 806 DKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 806 ~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
...|+.+.|-. ...|++.+.|..|++|+
T Consensus 573 ~~gVn~v~wld-e~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 573 LGGVNSVAWLD-ESTVVSSGQDANIKVWN 600 (603)
T ss_pred ccCceeEEEec-CceEEeccCcceeEEec
Confidence 88899999964 56788999999999995
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.9e-35 Score=300.87 Aligned_cols=288 Identities=26% Similarity=0.470 Sum_probs=269.5
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
.+...+.+|..+|+.+-|+|+-.+++++++|++|++||..+++++..+++|.+.|.+|+|+..|++|++++.|-.+.+||
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWD 178 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhee
Confidence 45677789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCC-CeeEEEEecCCCEEEEEEcCC
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIEN 701 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~-~i~~l~~sp~g~~ll~~s~dg 701 (834)
..+...+++...+|...|.+++|-|.|. .+++|+.|.+|+.|++.++-++.++..+. -+..+..+.||..+++++.|.
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dq 257 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQ 257 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecCC-eeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCc
Confidence 9976667888999999999999999986 55599999999999999999999998654 488899999999999999999
Q ss_pred eEEEEECCCCeEEEEEeCCCCCEEEEEEcCC---------------CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC
Q 003279 702 YISILDVETQVCRLKLQGHKNQVHSVCWNTS---------------GEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 765 (834)
Q Consensus 702 ~I~iwDl~t~~~~~~l~~h~~~I~sl~~spd---------------g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~ 765 (834)
+|++|-+.++.+...+.+|..+|.|++|-|. +.++++++ |++|++||+.++ .++.++.+|.
T Consensus 258 tl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---~cL~tL~ghd 334 (406)
T KOG0295|consen 258 TLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---MCLFTLVGHD 334 (406)
T ss_pred eEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---eEEEEEeccc
Confidence 9999999999999999999999999999762 24888888 999999999999 8999999999
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 766 NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 766 ~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+.|..++|+|.|+||+++..|++|++||++++.++ .+..|+..|+++.|+.+..+++||+-|-.+++|.
T Consensus 335 nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 335 NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 99999999999999999999999999999999988 6779999999999999999999999999999995
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.3e-33 Score=276.25 Aligned_cols=289 Identities=21% Similarity=0.313 Sum_probs=251.3
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 581 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~ 581 (834)
..-+|++.+.|.+|+.|....+ ...+++...++.|+.+.+.||+++||+++. -.|++||+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG-------------------~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~ 68 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTG-------------------ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDL 68 (311)
T ss_pred CceEEEeccCcceeeeeehhcC-------------------eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEc
Confidence 5578899999999999954332 456778888889999999999999999986 68999999
Q ss_pred CCCe--EEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC
Q 003279 582 ESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 659 (834)
Q Consensus 582 ~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D 659 (834)
.+++ ++.++.+|++.|+.+.|..+|++++|||+||+++|||++... ......|..+|+++..+|+-..+| +|+.+
T Consensus 69 ~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~--~qR~~~~~spVn~vvlhpnQteLi-s~dqs 145 (311)
T KOG0315|consen 69 NSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS--CQRNYQHNSPVNTVVLHPNQTELI-SGDQS 145 (311)
T ss_pred cCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc--cchhccCCCCcceEEecCCcceEE-eecCC
Confidence 8765 578999999999999999999999999999999999999843 444555889999999999966554 99999
Q ss_pred CcEEEEECCCCceeeEeec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC------eEEEEEeCCCCCEEEEEEcC
Q 003279 660 SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQ------VCRLKLQGHKNQVHSVCWNT 731 (834)
Q Consensus 660 g~I~lwDl~s~~~i~~~~~--~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~------~~~~~l~~h~~~I~sl~~sp 731 (834)
|.|++||+....+...+-. ...+.++.+.|+|.+++++...|..++|++-+. +++.+++.|...+..+.+||
T Consensus 146 g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP 225 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP 225 (311)
T ss_pred CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC
Confidence 9999999998876665543 456899999999999999999999999998754 56777889999999999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCe
Q 003279 732 SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLV 809 (834)
Q Consensus 732 dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V 809 (834)
|+++|++++ |.+++||++++. .+.-..+.+|...+..++||.||.||++++.|+.+++||+..++.+ ...+|....
T Consensus 226 d~k~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~ 303 (311)
T KOG0315|consen 226 DVKYLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAA 303 (311)
T ss_pred CCcEEEeecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCccccc
Confidence 999999999 999999999876 3555677888999999999999999999999999999999999877 666888888
Q ss_pred EEEEEe
Q 003279 810 SSLAAS 815 (834)
Q Consensus 810 ~~lafs 815 (834)
.|++..
T Consensus 304 vc~~ln 309 (311)
T KOG0315|consen 304 VCVALN 309 (311)
T ss_pred EEEEee
Confidence 777754
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3e-35 Score=307.93 Aligned_cols=277 Identities=21% Similarity=0.430 Sum_probs=249.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceee
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 631 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~ 631 (834)
...|..|.|.|+|+.|++|+..|.+.+|+..+......+..|..+|+++.|++++.++++|+.+|.|++|+..-.. +.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--Vk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--VK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh--hH
Confidence 4569999999999999999999999999998777777788999999999999999999999999999999987543 44
Q ss_pred eecc-CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003279 632 TFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVE 709 (834)
Q Consensus 632 ~~~~-h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~ 709 (834)
.+.. |...|.+++|+|+.. .|++|++||+|+|||....+....+.. +-.|.++.|+|....|++++.|+.|++||.+
T Consensus 174 ~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 4444 459999999999754 677999999999999999888877775 4569999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCC
Q 003279 710 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYE 787 (834)
Q Consensus 710 t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg-~~L~sgs~dg 787 (834)
++.|+.++.+|+..|..+.|++++.+|++++ |..+++||+++- +.+..+.+|...+.++.|+|-. ..|.+|+.||
T Consensus 253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg 329 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDG 329 (464)
T ss_pred CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---HHHHHhhcchhhheeeccccccccceeeccCCC
Confidence 9999999999999999999999999999999 999999999965 6788889999999999999966 4566788899
Q ss_pred eEEEEECCCCeEE--EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 788 TLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 788 ~I~Iwdl~~~~~~--~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.|..|.+...+++ .-.+|+..|++++|+|-|.+|++|+.|.++++|.
T Consensus 330 svvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 330 SVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 9999999866655 3458999999999999999999999999999994
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2e-33 Score=298.81 Aligned_cols=315 Identities=19% Similarity=0.295 Sum_probs=270.0
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEec----CCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP----ASTSKVESCHFSPDGKLLATGGHDKKAVLW 579 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~----gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IW 579 (834)
.++++|+.|...++|......... .....++....+. ..+..|++++|+.+|.+||+|+.||.++||
T Consensus 192 ~llasg~~~s~ari~~l~e~~~~~---------~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw 262 (524)
T KOG0273|consen 192 GLLASGSGDSTARIWNLLENSNIG---------STQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIW 262 (524)
T ss_pred hhhhccCCccceeeeeehhhcccc---------chhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEE
Confidence 477899999999999554411110 0000011001111 124579999999999999999999999999
Q ss_pred eCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC
Q 003279 580 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 659 (834)
Q Consensus 580 d~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D 659 (834)
+ .++..+.++..|.++|.++.|+.+|.||++++.|+++.+||..++.. ...+.-|..+-.++.|-.+. -|++++.|
T Consensus 263 ~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~-~q~f~~~s~~~lDVdW~~~~--~F~ts~td 338 (524)
T KOG0273|consen 263 N-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV-KQQFEFHSAPALDVDWQSND--EFATSSTD 338 (524)
T ss_pred e-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE-EEeeeeccCCccceEEecCc--eEeecCCC
Confidence 9 45688889999999999999999999999999999999999988664 66677788877888998654 47799999
Q ss_pred CcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCC-----
Q 003279 660 SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG----- 733 (834)
Q Consensus 660 g~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg----- 733 (834)
+.|+|+.+....++.++.+ +++|.++.|.|.+..|++++.|++++||......+...+..|...|..+.|+|+|
T Consensus 339 ~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n 418 (524)
T KOG0273|consen 339 GCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSN 418 (524)
T ss_pred ceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCC
Confidence 9999999998888888774 6789999999999999999999999999999999999999999999999999965
Q ss_pred ----CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCC
Q 003279 734 ----EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKL 808 (834)
Q Consensus 734 ----~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~ 808 (834)
..+++++ |++|++||+..+ .+++.+..|..+|.+++|+|+|+++++|+.|+.|.+|++++++.+.-....+.
T Consensus 419 ~~~~~~l~sas~dstV~lwdv~~g---v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~ 495 (524)
T KOG0273|consen 419 PNMNLMLASASFDSTVKLWDVESG---VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGG 495 (524)
T ss_pred CcCCceEEEeecCCeEEEEEccCC---ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCe
Confidence 3566666 999999999998 89999999999999999999999999999999999999999999988888888
Q ss_pred eEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 809 VSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 809 V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
|..++|+.+|.+|+.+-.||.|++-|
T Consensus 496 Ifel~Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 496 IFELCWNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred EEEEEEcCCCCEEEEEecCCCceEEE
Confidence 99999999999999999999998754
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-33 Score=279.72 Aligned_cols=275 Identities=16% Similarity=0.281 Sum_probs=235.9
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 581 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~ 581 (834)
....+.+++.|..+-+|....+ +...| ..++.+.||...|..+..++||.+.++++.|+++++||+
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~d-----------d~~~G---~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl 92 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSD-----------DIKYG---VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDL 92 (315)
T ss_pred CCceEEEcccceEEEEEEeccC-----------ccccC---ceeeeeeccceEecceEEccCCceEEeccccceEEEEEe
Confidence 3567889999999999966554 11222 357888999999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeec-cCCCCeEEEEEccCC-CcEEEEEeCC
Q 003279 582 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSK-EDLLCSCDNN 659 (834)
Q Consensus 582 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~-~h~~~V~sl~fspdg-~~llasgs~D 659 (834)
.+++....|.+|...|.+++|++|.+.|++|+.|++|++|++..... ..... .+.+.|.|++|+|+. +.++++++.|
T Consensus 93 ~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck-~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~D 171 (315)
T KOG0279|consen 93 ATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK-YTIHEDSHREWVSCVRFSPNESNPIIVSASWD 171 (315)
T ss_pred cCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEE-EEEecCCCcCcEEEEEEcCCCCCcEEEEccCC
Confidence 99999999999999999999999999999999999999999986432 33222 237899999999985 5688899999
Q ss_pred CcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 003279 660 SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 738 (834)
Q Consensus 660 g~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Las 738 (834)
++|++||+++.+....+.. .+.++.+.++|||...++|+.||.+.+||++.++.+..+. |...|.+++|+|+...|+.
T Consensus 172 ktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~ 250 (315)
T KOG0279|consen 172 KTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCA 250 (315)
T ss_pred ceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEee
Confidence 9999999999888877765 4558999999999999999999999999999999988876 8899999999999999988
Q ss_pred EeCCeEEEEEcCCCCCceeEEEeec---------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003279 739 VSDELVRVWSIGSGSKGECIHELSC---------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 739 gsDg~I~IwDl~s~~~~~~i~~~~~---------~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
+.+..|+|||+.+. .++.++.. ......+++|+++|..|+++-.|+.|++|.+.
T Consensus 251 at~~sIkIwdl~~~---~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 251 ATATSIKIWDLESK---AVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ccCCceEEEeccch---hhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 88888999999987 34433322 13345778999999999999999999999874
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.7e-33 Score=295.43 Aligned_cols=282 Identities=25% Similarity=0.441 Sum_probs=249.6
Q ss_pred EEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCC--CeEE--EEec----------cCCCCeEEEEECCCCCEE
Q 003279 545 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTES--FTVK--STLE----------EHTQWITDVRFSPSLSRL 609 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~IWd~~t--~~~~--~~l~----------~h~~~I~~l~fspdg~~L 609 (834)
++.++ |+.+|.+++|+|-.. +|++|+.|-+.++|++.. .... ..++ ..+..|++++|+.+|..|
T Consensus 172 ~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~L 250 (524)
T KOG0273|consen 172 AKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLL 250 (524)
T ss_pred eeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeE
Confidence 45555 999999999999655 899999999999999874 1111 1111 133579999999999999
Q ss_pred EEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCe-eEEEEe
Q 003279 610 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQMRFQ 688 (834)
Q Consensus 610 atgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i-~~l~~s 688 (834)
|+|+.||.++||+.... .+.++..|.++|.++.|+.+|.+ +++++.|+++.+||..++.....+..++.. ..+.|-
T Consensus 251 atG~~~G~~riw~~~G~--l~~tl~~HkgPI~slKWnk~G~y-ilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~ 327 (524)
T KOG0273|consen 251 ATGSEDGEARIWNKDGN--LISTLGQHKGPIFSLKWNKKGTY-ILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ 327 (524)
T ss_pred EEeecCcEEEEEecCch--hhhhhhccCCceEEEEEcCCCCE-EEeccCCccEEEEeccCceEEEeeeeccCCccceEEe
Confidence 99999999999999853 37888999999999999999875 559999999999999999999998876665 778887
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003279 689 PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 767 (834)
Q Consensus 689 p~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 767 (834)
.+ ..|++++.|+.|+|+-+....++.++.+|.+.|.++.|+|.|.+|++++ |++++||..... .+.+.+..|...
T Consensus 328 ~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~---~~~~~l~~Hske 403 (524)
T KOG0273|consen 328 SN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS---NSVHDLQAHSKE 403 (524)
T ss_pred cC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC---cchhhhhhhccc
Confidence 65 6789999999999999999999999999999999999999999999999 999999998877 788899999999
Q ss_pred eEEEEEeCCCC---------EEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 768 FHSCVFHPTFP---------SLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 768 I~svafspdg~---------~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
|..+.|+|+|+ .|++++.|++|++||+..+.++ .+..|..+|.+++|+|+|+++|+|+.||.|.||+
T Consensus 404 i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 404 IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence 99999999864 5899999999999999999988 7779999999999999999999999999999995
No 20
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.7e-32 Score=271.34 Aligned_cols=283 Identities=24% Similarity=0.438 Sum_probs=241.6
Q ss_pred eeEEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCC---CeEEEEe-ccCCCCeEEEEECCCCCEEEEEeCCC
Q 003279 542 FTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTES---FTVKSTL-EEHTQWITDVRFSPSLSRLATSSADR 616 (834)
Q Consensus 542 ~~~~~~l~gH~~~V~sl~fSpd-g~~Lasgs~Dg~I~IWd~~t---~~~~~~l-~~h~~~I~~l~fspdg~~Latgs~Dg 616 (834)
+..++.+.+|.++|..++|+|- |..||+|+.|+.|+||+... ..+...+ .+|+..|..++|+|.|++|+++|+|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4567889999999999999998 88999999999999999884 4455555 47999999999999999999999999
Q ss_pred eEEEEecCCCC-ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC---ceeeEee-cCCCeeEEEEecCC
Q 003279 617 TVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFK-CQSGATQMRFQPRL 691 (834)
Q Consensus 617 ~I~IWDl~s~~-~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~---~~i~~~~-~~~~i~~l~~sp~g 691 (834)
++.||.-..+. .++.++.+|...|.|++|+++|. +||+|+.|+.|.||.+..+ +++..+. |...|..+.|+|..
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence 99999876544 35788999999999999999976 7889999999999999754 3555555 34569999999999
Q ss_pred CEEEEEEcCCeEEEEECC---CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003279 692 GRILAAAIENYISILDVE---TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 767 (834)
Q Consensus 692 ~~ll~~s~dg~I~iwDl~---t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 767 (834)
..|++++.|++|++|+-. ...++.++.+|...|.+++|++.|..|++++ |++|+||...+. .-..|...
T Consensus 163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-------~~~~~sr~ 235 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-------LSGMHSRA 235 (312)
T ss_pred ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-------cchhcccc
Confidence 999999999999999876 3488999999999999999999999999999 999999986543 12336678
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCe------EE--EeccCCCCeEEEEEeCC-CCEEEEEecCCcEEEeC
Q 003279 768 FHSCVFHPTFPSLLVIGCYETLELWNMTENK------TL--TLSAHDKLVSSLAASTV-NGMVASASHDKCVKIWK 834 (834)
Q Consensus 768 I~svafspdg~~L~sgs~dg~I~Iwdl~~~~------~~--~l~~h~~~V~~lafspd-g~~LaSgs~DG~I~IWd 834 (834)
++.+.|. ...|++++.|+.|++|.....- .+ ....|+..|+++.|.|. ..+|++|++||.|++|.
T Consensus 236 ~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 236 LYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred eEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 8999998 4469999999999999766431 11 33478999999999995 67999999999999994
No 21
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-33 Score=294.98 Aligned_cols=290 Identities=20% Similarity=0.323 Sum_probs=244.8
Q ss_pred CeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC---CeEEEEeccCCCCeEEEEECCCCCEEEEEeCC
Q 003279 539 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 615 (834)
Q Consensus 539 g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t---~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D 615 (834)
..+..+..++..|++.|+-+.||++|+|||+++.|.+..||++.. .+..+++.+|..+|..+.|+||.++|++|+.|
T Consensus 211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~ 290 (519)
T KOG0293|consen 211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD 290 (519)
T ss_pred cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch
Confidence 456677889999999999999999999999999999999997653 45578899999999999999999999999999
Q ss_pred CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec--CCCeeEEEEecCCCE
Q 003279 616 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGR 693 (834)
Q Consensus 616 g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~--~~~i~~l~~sp~g~~ 693 (834)
..+.+||+.++......-.++...+.+++|.|||.. +++|+.|+.|..||++... ...... ...|.++++++||++
T Consensus 291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred HheeeccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcE
Confidence 999999999987644444456789999999999886 5599999999999998443 333322 245899999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc--eEE
Q 003279 694 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK--FHS 770 (834)
Q Consensus 694 ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~--I~s 770 (834)
+++.+.|..|++|+.++...+..+. ...+|+++++|.|++++.+.- +..|.+||+... ..+..+.+|... +..
T Consensus 369 vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~---~lv~kY~Ghkq~~fiIr 444 (519)
T KOG0293|consen 369 VLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN---KLVRKYFGHKQGHFIIR 444 (519)
T ss_pred EEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh---hHHHHhhcccccceEEE
Confidence 9999999999999999876665444 456899999999999988877 899999999865 566666666533 333
Q ss_pred EEEe-CCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCC-CEEEEEecCCcEEEeC
Q 003279 771 CVFH-PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 834 (834)
Q Consensus 771 vafs-pdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg-~~LaSgs~DG~I~IWd 834 (834)
-+|- .+..++++|+.|+.|+||+..+++++ .+.+|...|+|++|+|.. .++|+|++||+|+||.
T Consensus 445 SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 445 SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 3444 35589999999999999999999988 788999999999999965 4899999999999994
No 22
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-31 Score=296.58 Aligned_cols=328 Identities=20% Similarity=0.326 Sum_probs=262.9
Q ss_pred CCceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeE
Q 003279 477 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 556 (834)
Q Consensus 477 ~~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~ 556 (834)
....++.|+|++ ++++.|.. ..+.+|..+..... .-.+|...+++.+|.+.|+
T Consensus 97 ~~v~~i~fSPng---------------~~fav~~g-n~lqiw~~P~~~~~-----------~~~pFvl~r~~~g~fddi~ 149 (893)
T KOG0291|consen 97 RGVGAIKFSPNG---------------KFFAVGCG-NLLQIWHAPGEIKN-----------EFNPFVLHRTYLGHFDDIT 149 (893)
T ss_pred CccceEEECCCC---------------cEEEEEec-ceeEEEecCcchhc-----------ccCcceEeeeecCCcccee
Confidence 345566666665 56666654 56888966654321 2345677889999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeE--EEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC---------
Q 003279 557 SCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--------- 625 (834)
Q Consensus 557 sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~--~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s--------- 625 (834)
++.|+.|.++|++|+.|-+++||+++..+. ...+.+|.+.|..+-|..+...++|.+.||.+.+|.+..
T Consensus 150 si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~ 229 (893)
T KOG0291|consen 150 SIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAE 229 (893)
T ss_pred EEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccccccc
Confidence 999999999999999999999999987666 577889999999999999999999999999999998761
Q ss_pred --------------CCc-----e-----eeeeccCCCCeEEEEEcc----------------------------------
Q 003279 626 --------------PDY-----S-----LRTFTGHSTTVMSLDFHP---------------------------------- 647 (834)
Q Consensus 626 --------------~~~-----~-----i~~~~~h~~~V~sl~fsp---------------------------------- 647 (834)
++. . ...+......|++.+|++
T Consensus 230 kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~ 309 (893)
T KOG0291|consen 230 KDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQK 309 (893)
T ss_pred ccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccce
Confidence 000 0 001111113444555544
Q ss_pred --------CCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 003279 648 --------SKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 718 (834)
Q Consensus 648 --------dg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~ 718 (834)
.|+.+.+.|+.=|.+.||++.+...+.... |...+++++++|||.++++|+.||.|+|||..++-|..+|.
T Consensus 310 I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt 389 (893)
T KOG0291|consen 310 ILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT 389 (893)
T ss_pred eeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec
Confidence 344444444444566666666555444444 34569999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEEcCC-eEEEEECC
Q 003279 719 GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCYE-TLELWNMT 795 (834)
Q Consensus 719 ~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-~~~I~svafspdg~~L~sgs~dg-~I~Iwdl~ 795 (834)
.|+..|+.+.|+..|+.+++.+ ||+|+.||+... +..+++... .....+++..|.|..+++|+.|. .|++|++.
T Consensus 390 eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY---rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~q 466 (893)
T KOG0291|consen 390 EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY---RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQ 466 (893)
T ss_pred cCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc---ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEee
Confidence 9999999999999999999999 999999999877 666676653 34578899999999999998888 89999999
Q ss_pred CCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 796 ENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 796 ~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+|+.+ .+.+|+++|.+++|+|++..||++++|.+|++||
T Consensus 467 TGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 467 TGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD 506 (893)
T ss_pred cCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence 99999 7889999999999999999999999999999997
No 23
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.5e-33 Score=301.04 Aligned_cols=290 Identities=20% Similarity=0.337 Sum_probs=252.4
Q ss_pred eEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCC-CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 003279 543 TEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 620 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~IWd~~t-~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~I 620 (834)
..+..+.||+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+.+|..|+++|.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 34678899999999999999 899999999999999999876 8999999999999999999999999999999999999
Q ss_pred EecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEc
Q 003279 621 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI 699 (834)
Q Consensus 621 WDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~ 699 (834)
||++++.+ +..+. ....++|+.|+|++.++|++|+.|+.|+.||+++++.+..+.. -+.|..+.|-+++.++++++.
T Consensus 285 wDtETG~~-~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 285 WDTETGQV-LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eccccceE-EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 99999875 33332 3467899999999988999999999999999999999888875 467999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEeC-CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC--CceEEEEEeC
Q 003279 700 ENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG--NKFHSCVFHP 775 (834)
Q Consensus 700 dg~I~iwDl~t~~~~~~l~~-h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~--~~I~svafsp 775 (834)
|+.++||+.+.+..+..+.. +.....|+..+|++.++++-+ |+.|.||.+...-.......+.+|. +.-..|.|||
T Consensus 363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp 442 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP 442 (503)
T ss_pred CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence 99999999998866554432 233456889999999999988 9999999976554333444455554 4456789999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCC-CEEEEEecCCcEEEeC
Q 003279 776 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 834 (834)
Q Consensus 776 dg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg-~~LaSgs~DG~I~IWd 834 (834)
||.+|++|+.||.+.+||.++-+.+ .+.+|+..+..+.|+|.. ..+|||+.||.|+|||
T Consensus 443 DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 443 DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999998888 788999999999999965 4899999999999997
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.8e-31 Score=294.23 Aligned_cols=288 Identities=23% Similarity=0.349 Sum_probs=252.4
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 003279 542 FTEFQLIPASTSKVESCHFSPDGKLLATGGHD-KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 620 (834)
Q Consensus 542 ~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~D-g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~I 620 (834)
+..+..+.-...+|..++|+..|.+||.|+.. |.+.||+..+...+....+|...|+|++++|||.++|||+.||.|+|
T Consensus 297 f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKv 376 (893)
T KOG0291|consen 297 FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKV 376 (893)
T ss_pred ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEE
Confidence 34567777777889999999999999998864 79999999998888888999999999999999999999999999999
Q ss_pred EecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCC--eeEEEEecCCCEEEEEE
Q 003279 621 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAA 698 (834)
Q Consensus 621 WDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~--i~~l~~sp~g~~ll~~s 698 (834)
||..++ .++.++..|+..|+.+.|+..+. .+++.+-||+|+.||+...++.++|..+.+ ..|++..|.|..+++|+
T Consensus 377 Wn~~Sg-fC~vTFteHts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~ 454 (893)
T KOG0291|consen 377 WNTQSG-FCFVTFTEHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGA 454 (893)
T ss_pred EeccCc-eEEEEeccCCCceEEEEEEecCC-EEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeec
Confidence 999975 46999999999999999999976 566889999999999999999999998766 56888888898888888
Q ss_pred cCC-eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC
Q 003279 699 IEN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 776 (834)
Q Consensus 699 ~dg-~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspd 776 (834)
.|. .|++|++.+|+.+..+.+|.++|.+++|+|++..|++++ |.+|++||+-... ...+.-.....+..++|+|+
T Consensus 455 ~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~---~~vEtl~i~sdvl~vsfrPd 531 (893)
T KOG0291|consen 455 QDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS---GTVETLEIRSDVLAVSFRPD 531 (893)
T ss_pred cceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC---ceeeeEeeccceeEEEEcCC
Confidence 875 799999999999999999999999999999999999999 9999999997652 22222334678999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEE-E----------------e----ccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 777 FPSLLVIGCYETLELWNMTENKTL-T----------------L----SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 777 g~~L~sgs~dg~I~Iwdl~~~~~~-~----------------l----~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
|+.|++++.||.|.+||++.+..+ . + ......++.+++++||.+|++|+....|+||+
T Consensus 532 G~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 532 GKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred CCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 999999999999999999765543 0 1 11235789999999999999999999999985
No 25
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.9e-31 Score=276.55 Aligned_cols=328 Identities=16% Similarity=0.205 Sum_probs=276.0
Q ss_pred CceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEE
Q 003279 478 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 557 (834)
Q Consensus 478 ~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~s 557 (834)
+.+.+.|.......+++ .+....+++++|+-|+...+|.....+ ....+.+|.+.|+|
T Consensus 54 DdS~~tF~~H~~svFav---sl~P~~~l~aTGGgDD~AflW~~~~ge-------------------~~~eltgHKDSVt~ 111 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAV---SLHPNNNLVATGGGDDLAFLWDISTGE-------------------FAGELTGHKDSVTC 111 (399)
T ss_pred ccceeehhhcCCceEEE---EeCCCCceEEecCCCceEEEEEccCCc-------------------ceeEecCCCCceEE
Confidence 33444444433333332 233366899999999999999665542 34667899999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCC
Q 003279 558 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS 637 (834)
Q Consensus 558 l~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~ 637 (834)
+.|+.||.+||||+-+|.|+||...++.....+...-+.|.-+.|+|.+.+|+.|+.||.|.+|.+.+.. ..+.+.+|.
T Consensus 112 ~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~-~~kv~~Gh~ 190 (399)
T KOG0296|consen 112 CSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-LCKVMSGHN 190 (399)
T ss_pred EEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc-eeeEecCCC
Confidence 9999999999999999999999999999998887677789999999999999999999999999999864 478899999
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE
Q 003279 638 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL 715 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~--~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~ 715 (834)
.++++=.|.|+|++++ ++..||+|++||+.++.++..+.. +....++.++..+..++.|..++.+++....+++.+.
T Consensus 191 ~~ct~G~f~pdGKr~~-tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~ 269 (399)
T KOG0296|consen 191 SPCTCGEFIPDGKRIL-TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN 269 (399)
T ss_pred CCcccccccCCCceEE-EEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence 9999999999988554 889999999999999999888874 4567889999999999999999999999999998887
Q ss_pred EEe--------CCCCCEEEEE---EcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003279 716 KLQ--------GHKNQVHSVC---WNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 783 (834)
Q Consensus 716 ~l~--------~h~~~I~sl~---~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sg 783 (834)
... .+...+.|+. |+..-.+.|+|+ ||+|.|||+... .++..-.|...|..+.|-+ ..+|+++
T Consensus 270 ~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~----~~R~~c~he~~V~~l~w~~-t~~l~t~ 344 (399)
T KOG0296|consen 270 CNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS----TLRHICEHEDGVTKLKWLN-TDYLLTA 344 (399)
T ss_pred ecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc----hhheeccCCCceEEEEEcC-cchheee
Confidence 766 3444444554 444556778888 999999999875 3334445778899999999 7899999
Q ss_pred EcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 784 GCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 784 s~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+.+|.|+.||.++|.++ .+.+|...|.+++++|+.++++|+|.|++.+||+
T Consensus 345 c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 345 CANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred ccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 99999999999999988 7889999999999999999999999999999985
No 26
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.3e-31 Score=268.79 Aligned_cols=277 Identities=24% Similarity=0.379 Sum_probs=245.3
Q ss_pred CceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEE
Q 003279 478 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 557 (834)
Q Consensus 478 ~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~s 557 (834)
....+.|+.+. +.+.++|.|+.+-+|++... ..+..++-....|..
T Consensus 57 Ki~~~~ws~Ds---------------r~ivSaSqDGklIvWDs~Tt-------------------nK~haipl~s~WVMt 102 (343)
T KOG0286|consen 57 KIYAMDWSTDS---------------RRIVSASQDGKLIVWDSFTT-------------------NKVHAIPLPSSWVMT 102 (343)
T ss_pred ceeeeEecCCc---------------CeEEeeccCCeEEEEEcccc-------------------cceeEEecCceeEEE
Confidence 45567777766 78899999999999966433 234566667788999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCC------eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceee
Q 003279 558 CHFSPDGKLLATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 631 (834)
Q Consensus 558 l~fSpdg~~Lasgs~Dg~I~IWd~~t~------~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~ 631 (834)
|+|+|.|+++|+|+-|+...||++.+. +..+.+.+|++.+.|+.|.+| ..|+|+|.|.++.+||++++.. +.
T Consensus 103 CA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~-~~ 180 (343)
T KOG0286|consen 103 CAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQ-TQ 180 (343)
T ss_pred EEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceE-EE
Confidence 999999999999999999999999854 445778999999999999975 5799999999999999999775 88
Q ss_pred eeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003279 632 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVET 710 (834)
Q Consensus 632 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t 710 (834)
.|.+|.+.|.+++++|...+.|++|+-|+..++||++.+.++..|.. ...|+.++|.|+|.-|++|+.|++.++||++.
T Consensus 181 ~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 181 VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecC
Confidence 99999999999999995556788999999999999999999999985 66799999999999999999999999999999
Q ss_pred CeEEEEEeC--CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003279 711 QVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 787 (834)
Q Consensus 711 ~~~~~~l~~--h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg 787 (834)
...+..+.. ...+|++++||..|++|++|. |..+.|||.-.+ +.+..+.+|++.|.++..+|||.-+++|+.|.
T Consensus 261 D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~---e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs 337 (343)
T KOG0286|consen 261 DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG---ERVGVLAGHENRVSCLGVSPDGMAVATGSWDS 337 (343)
T ss_pred CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc---ceEEEeeccCCeeEEEEECCCCcEEEecchhH
Confidence 887777763 345899999999999999988 889999999887 77888899999999999999999999999999
Q ss_pred eEEEEE
Q 003279 788 TLELWN 793 (834)
Q Consensus 788 ~I~Iwd 793 (834)
.|+||.
T Consensus 338 ~lriW~ 343 (343)
T KOG0286|consen 338 TLRIWA 343 (343)
T ss_pred heeecC
Confidence 999994
No 27
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5.8e-31 Score=323.03 Aligned_cols=284 Identities=18% Similarity=0.283 Sum_probs=242.4
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----e----EEEEeccCCCCeEEEEECC-CCCEEEEEeCCCeE
Q 003279 548 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----T----VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTV 618 (834)
Q Consensus 548 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~----~----~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I 618 (834)
+.+|.+.|++++|+|+|++||+|+.|+.|+|||+... . ....+. +...|.+++|++ ++.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997532 1 222333 346799999987 47899999999999
Q ss_pred EEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEe-cCCCEEEEE
Q 003279 619 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ-PRLGRILAA 697 (834)
Q Consensus 619 ~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~s-p~g~~ll~~ 697 (834)
+|||+.++. .+..+.+|...|++++|+|....+|++|+.|+.|++||++++.++..+.....+.++.|+ +++..|++|
T Consensus 558 ~lWd~~~~~-~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 558 QVWDVARSQ-LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEECCCCe-EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEE
Confidence 999998765 477888999999999999855668889999999999999999999888887889999995 468899999
Q ss_pred EcCCeEEEEECCCCe-EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC---CceeEEEeecCCCceEEEE
Q 003279 698 AIENYISILDVETQV-CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS---KGECIHELSCTGNKFHSCV 772 (834)
Q Consensus 698 s~dg~I~iwDl~t~~-~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~---~~~~i~~~~~~~~~I~sva 772 (834)
+.|+.|++||+++.. .+..+.+|...|.++.|. ++.+|++++ |+.|+|||++... ...++..+.+|...+.+++
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence 999999999998865 567788899999999997 677888888 9999999997532 2256778889999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeEE--------------EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 773 FHPTFPSLLVIGCYETLELWNMTENKTL--------------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 773 fspdg~~L~sgs~dg~I~Iwdl~~~~~~--------------~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
|++++.+|++++.|+.|++|+......+ ....|...|.+++|++++.+|++|+.||.|+||+
T Consensus 716 ~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 716 LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 9999999999999999999998655322 1123556799999999999999999999999996
No 28
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6e-32 Score=304.23 Aligned_cols=272 Identities=23% Similarity=0.392 Sum_probs=237.8
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-------------------------------eEEEEeccCCCC
Q 003279 548 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-------------------------------TVKSTLEEHTQW 596 (834)
Q Consensus 548 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~-------------------------------~~~~~l~~h~~~ 596 (834)
+..-...|+|+.|++|+++||.|..|..|++|.+... ....++.+|.++
T Consensus 374 ~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GP 453 (707)
T KOG0263|consen 374 FHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGP 453 (707)
T ss_pred EEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCc
Confidence 3333455999999999999999999999999976521 122446799999
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEe
Q 003279 597 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 676 (834)
Q Consensus 597 I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~ 676 (834)
|..+.|+|+.++|++||.|++||+|.+.+.. ++..+.+|..+|+++.|+|.| ++|++++.|++-++|......+.+.+
T Consensus 454 Vyg~sFsPd~rfLlScSED~svRLWsl~t~s-~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~PlRif 531 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS-CLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKPLRIF 531 (707)
T ss_pred eeeeeecccccceeeccCCcceeeeecccce-eEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCchhhh
Confidence 9999999999999999999999999999866 477888999999999999995 58889999999999999998888888
Q ss_pred ec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC
Q 003279 677 KC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK 754 (834)
Q Consensus 677 ~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~ 754 (834)
.+ -+.+.|+.|+|+..++++|+.|.+|++||+.+|..++.|.||.++|++++|+|+|++|++|+ |+.|+|||+.++
T Consensus 532 aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~-- 609 (707)
T KOG0263|consen 532 AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG-- 609 (707)
T ss_pred cccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC--
Confidence 75 56799999999999999999999999999999999999999999999999999999999999 999999999998
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-------------------------EeccCCCCe
Q 003279 755 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-------------------------TLSAHDKLV 809 (834)
Q Consensus 755 ~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-------------------------~l~~h~~~V 809 (834)
..+..+.+|.+.|.++.|+.+|..|++++.|.+|++||+..-... .+.....+|
T Consensus 610 -~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv 688 (707)
T KOG0263|consen 610 -SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPV 688 (707)
T ss_pred -cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceE
Confidence 778888899999999999999999999999999999998542211 333445578
Q ss_pred EEEEEeCCCCEEEEE
Q 003279 810 SSLAASTVNGMVASA 824 (834)
Q Consensus 810 ~~lafspdg~~LaSg 824 (834)
.++.|....-.|++|
T Consensus 689 ~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 689 VGLHFTRRNLLLAVG 703 (707)
T ss_pred EEEEEeccceeEEec
Confidence 888888766455554
No 29
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8.2e-32 Score=303.14 Aligned_cols=253 Identities=23% Similarity=0.433 Sum_probs=221.6
Q ss_pred CCCcccCCCceEEeccCCCCeEEeecCCCC----------C-----CCcccccccccCCCeeeeEEEEecCCCCCeEEEE
Q 003279 495 APNQLTDMDRFVDDGSLDDNVESFLSPDDA----------D-----PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCH 559 (834)
Q Consensus 495 ~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~----------~-----~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~ 559 (834)
....+.+....+|+|-.|..|++|...... . ..+......+..++ ...+++.||.++|..+.
T Consensus 382 ~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~---~~~~~L~GH~GPVyg~s 458 (707)
T KOG0263|consen 382 TCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS---GTSRTLYGHSGPVYGCS 458 (707)
T ss_pred eeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC---ceeEEeecCCCceeeee
Confidence 334455666799999999999999665311 0 01111222222222 33456899999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCC
Q 003279 560 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT 639 (834)
Q Consensus 560 fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~ 639 (834)
|+|+.++|++++.|++|++|.+.+..++..+++|..+|+++.|+|.|-||||+|.|++.++|..+. ..+.+.+.+|-+.
T Consensus 459 FsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~-~~PlRifaghlsD 537 (707)
T KOG0263|consen 459 FSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH-NKPLRIFAGHLSD 537 (707)
T ss_pred ecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc-CCchhhhcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999987 4468999999999
Q ss_pred eEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 003279 640 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 718 (834)
Q Consensus 640 V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~ 718 (834)
|.|+.|+|+.. ++++|+.|.+|++||+.+|..++.|.. ..+|.+++|+|+|.+|++|+.|+.|.+||+.++..+..+.
T Consensus 538 V~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~ 616 (707)
T KOG0263|consen 538 VDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK 616 (707)
T ss_pred cceEEECCccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh
Confidence 99999999965 777999999999999999999999985 5679999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003279 719 GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 752 (834)
Q Consensus 719 ~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 752 (834)
+|++.|.++.|+.+|.+|++++ |+.|++||+...
T Consensus 617 ~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 617 GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999999999999999999 999999998754
No 30
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.3e-31 Score=295.00 Aligned_cols=288 Identities=21% Similarity=0.326 Sum_probs=260.1
Q ss_pred eEEEEecCCCCCeEEEEE-cCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 003279 543 TEFQLIPASTSKVESCHF-SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 621 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~f-Spdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 621 (834)
...+.+-|..+.|.+++| .|+..+||+++..+.+++|++.+..+. .+.+|++.|.++....+|.+|+|||.|.+|++|
T Consensus 314 ~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilW 392 (775)
T KOG0319|consen 314 TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILW 392 (775)
T ss_pred EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEE
Confidence 445667788899999987 457789999999999999998887776 889999999999966678899999999999999
Q ss_pred ecCCCC---ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCcee---eEe-------ecCCCeeEEEEe
Q 003279 622 DTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVF-------KCQSGATQMRFQ 688 (834)
Q Consensus 622 Dl~s~~---~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i---~~~-------~~~~~i~~l~~s 688 (834)
.++++. .++....+|...|.+++++..+..+|++++.|++|++|++...+.. ..+ .|...|++++++
T Consensus 393 r~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia 472 (775)
T KOG0319|consen 393 RLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA 472 (775)
T ss_pred EecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEec
Confidence 885432 2456678999999999999999999999999999999999862211 111 246789999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003279 689 PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 767 (834)
Q Consensus 689 p~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 767 (834)
|+.+.|++|+.|.+.+||+++......++.+|...|.|+.|++....+++++ |++|+||.+.+. .|+.++.+|...
T Consensus 473 ~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f---SClkT~eGH~~a 549 (775)
T KOG0319|consen 473 PNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF---SCLKTFEGHTSA 549 (775)
T ss_pred CCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc---eeeeeecCccce
Confidence 9999999999999999999999999999999999999999999999999999 999999999998 899999999999
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 768 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 768 I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
|..+.|-.++..|++++.||-|++|++++++++ ++..|...|++++.++...+++||+.||.|.+|+
T Consensus 550 Vlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 550 VLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred eEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 999999999999999999999999999999988 8889999999999999999999999999999995
No 31
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.98 E-value=4.8e-32 Score=283.98 Aligned_cols=279 Identities=24% Similarity=0.421 Sum_probs=238.4
Q ss_pred CceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEE
Q 003279 478 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 557 (834)
Q Consensus 478 ~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~s 557 (834)
+...+.|.+++ +.|.+|+..+.+.+| .+..+....++.+|+.+|.+
T Consensus 98 ~V~~v~WtPeG---------------RRLltgs~SGEFtLW-------------------Ng~~fnFEtilQaHDs~Vr~ 143 (464)
T KOG0284|consen 98 PVNVVRWTPEG---------------RRLLTGSQSGEFTLW-------------------NGTSFNFETILQAHDSPVRT 143 (464)
T ss_pred ceeeEEEcCCC---------------ceeEeecccccEEEe-------------------cCceeeHHHHhhhhccccee
Confidence 34566777766 778899999999998 33445556678899999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCC
Q 003279 558 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS 637 (834)
Q Consensus 558 l~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~ 637 (834)
+.|+++|.++++|+.+|.|++|+..-.........|...|++++|+|+...|++||.||+|+|||....+. .+.+.+|.
T Consensus 144 m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke-e~vL~GHg 222 (464)
T KOG0284|consen 144 MKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE-ERVLRGHG 222 (464)
T ss_pred EEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch-hheeccCC
Confidence 99999999999999999999998654333333344559999999999999999999999999999987654 56779999
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003279 638 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 716 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~ 716 (834)
-.|.+++|+|... ++++++.|..|++||.+++.|+.++.. ...|..+.|.+++++|++++.|..+++||+++.+.+..
T Consensus 223 wdVksvdWHP~kg-LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~ 301 (464)
T KOG0284|consen 223 WDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFT 301 (464)
T ss_pred CCcceeccCCccc-eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHH
Confidence 9999999999955 888999999999999999999988765 55699999999999999999999999999999999999
Q ss_pred EeCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 717 LQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 717 l~~h~~~I~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
+.+|+..|+++.|+|-. .+|++++ ||.|..|.+...+ .....-..|...|++++|+|-|..|++|+.|.++++|.-
T Consensus 302 ~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~--p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 302 YRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE--PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred hhcchhhheeeccccccccceeeccCCCceEEEeccccc--cccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 99999999999999954 4555666 9999999998442 222233568899999999999999999999999999974
No 32
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.1e-30 Score=287.21 Aligned_cols=313 Identities=19% Similarity=0.278 Sum_probs=261.0
Q ss_pred ccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCC--EEEEEeCCCcE
Q 003279 499 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK--LLATGGHDKKA 576 (834)
Q Consensus 499 ~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~--~Lasgs~Dg~I 576 (834)
++....++++|+.|+.+++|+-... .....|+||.+.|.++.|+|+-. +|++|..|+.|
T Consensus 113 ~~~~g~LlAtggaD~~v~VWdi~~~-------------------~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v 173 (775)
T KOG0319|consen 113 FDPTGTLLATGGADGRVKVWDIKNG-------------------YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTV 173 (775)
T ss_pred EcCCCceEEeccccceEEEEEeeCC-------------------EEEEEecCCCceEEEEEeCCccchhheeecCCCceE
Confidence 3445589999999999999965443 34678999999999999999765 48999999999
Q ss_pred EEEeCCCCeE-EEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC----------------------------
Q 003279 577 VLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---------------------------- 627 (834)
Q Consensus 577 ~IWd~~t~~~-~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~---------------------------- 627 (834)
++||+.+... +.++..|.+.|++++|++|+..+++++.|..|.|||+...+
T Consensus 174 ~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~ 253 (775)
T KOG0319|consen 174 RVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYI 253 (775)
T ss_pred EEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEE
Confidence 9999996554 77888999999999999999999999999999999875100
Q ss_pred --------------------------------------------------------------------------------
Q 003279 628 -------------------------------------------------------------------------------- 627 (834)
Q Consensus 628 -------------------------------------------------------------------------------- 627 (834)
T Consensus 254 ~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG 333 (775)
T KOG0319|consen 254 ITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLG 333 (775)
T ss_pred EEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecC
Confidence
Q ss_pred ------------c----------eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCcee----eEe-ecCC
Q 003279 628 ------------Y----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA----GVF-KCQS 680 (834)
Q Consensus 628 ------------~----------~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i----~~~-~~~~ 680 (834)
. ....+.+|+..|.+++...+| .+|++|+.|+++++|.++++... ... .|..
T Consensus 334 ~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~ 412 (775)
T KOG0319|consen 334 PEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTN 412 (775)
T ss_pred CccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhhhhhhccccc
Confidence 0 012345688888888854454 58999999999999988554322 222 2456
Q ss_pred CeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeE-----EE----EEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEc
Q 003279 681 GATQMRFQPRL-GRILAAAIENYISILDVETQVC-----RL----KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 749 (834)
Q Consensus 681 ~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t~~~-----~~----~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl 749 (834)
.|.+++++..+ .+|++++.|.+|++|++...+. +. ....|...|+|++++|+.++|++|+ |.+.+||++
T Consensus 413 svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~l 492 (775)
T KOG0319|consen 413 SVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDL 492 (775)
T ss_pred ccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecc
Confidence 68888887654 5678888999999999986211 11 2235999999999999999999999 999999999
Q ss_pred CCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCC
Q 003279 750 GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDK 828 (834)
Q Consensus 750 ~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG 828 (834)
... .....+.+|...|.++.|++....+++++.|.+|+||.+.+..++ ++.+|...|..+.|-.+++.|++|+.||
T Consensus 493 e~~---~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adG 569 (775)
T KOG0319|consen 493 EQL---RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADG 569 (775)
T ss_pred cCc---eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCC
Confidence 965 889999999999999999999999999999999999999999998 7889999999999999999999999999
Q ss_pred cEEEeC
Q 003279 829 CVKIWK 834 (834)
Q Consensus 829 ~I~IWd 834 (834)
.|+||+
T Consensus 570 liKlWn 575 (775)
T KOG0319|consen 570 LIKLWN 575 (775)
T ss_pred cEEEEe
Confidence 999996
No 33
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1e-30 Score=270.93 Aligned_cols=272 Identities=25% Similarity=0.464 Sum_probs=245.3
Q ss_pred ccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003279 499 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 578 (834)
Q Consensus 499 ~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~I 578 (834)
+.....++++.+.|.++++|+.... ...+.++||++.|.+|+|+..|++||+++.|-.+.+
T Consensus 116 ~hp~~~~v~~as~d~tikv~D~~tg-------------------~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 116 FHPSEALVVSASEDATIKVFDTETG-------------------ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred eccCceEEEEecCCceEEEEEccch-------------------hhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 3334467788889999999955433 225778999999999999999999999999999999
Q ss_pred EeCCC-CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEe
Q 003279 579 WCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 657 (834)
Q Consensus 579 Wd~~t-~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs 657 (834)
||.++ .++++.+.+|...|.+++|-|.|.+|++++.|.+|+.|++.++ +++.++.+|...|..++.+.||. ++++|+
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg-~cv~t~~~h~ewvr~v~v~~DGt-i~As~s 254 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG-YCVKTFPGHSEWVRMVRVNQDGT-IIASCS 254 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc-eeEEeccCchHhEEEEEecCCee-EEEecC
Confidence 99987 6778888999999999999999999999999999999999985 46999999999999999999965 899999
Q ss_pred CCCcEEEEECCCCceeeEeec-CCCeeEEEEecC---------------CCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 003279 658 NNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPR---------------LGRILAAAIENYISILDVETQVCRLKLQGHK 721 (834)
Q Consensus 658 ~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~---------------g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~ 721 (834)
.|.+|++|-+.++.|...+.. ...+.|++|.|. +.++++++.|++|++||+.++.++.++.+|.
T Consensus 255 ~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghd 334 (406)
T KOG0295|consen 255 NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHD 334 (406)
T ss_pred CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEeccc
Confidence 999999999999988777764 566888888773 2478899999999999999999999999999
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 722 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 722 ~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
++|..++|+|.|+||+++. |++++|||+.+. .|...+..|..-++++.|+.+..++++|+-|..+++|..
T Consensus 335 nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~---~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 335 NWVRGVAFSPGGKYILSCADDKTLRVWDLKNL---QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ceeeeeEEcCCCeEEEEEecCCcEEEEEeccc---eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999999 889999999998 899999999999999999999999999999999999974
No 34
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=5.4e-30 Score=285.01 Aligned_cols=281 Identities=20% Similarity=0.387 Sum_probs=255.3
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC
Q 003279 546 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 625 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s 625 (834)
..+.||...|.+++||.|...+++|+ .+.|+||+..+.++++++... .+.+..|.|.++++++|...|.+.+||+.+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 45679999999999999998888776 478999999999999999643 899999999999999999999999999998
Q ss_pred CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-----Cce--------eeEeecCCCeeEEEEecCCC
Q 003279 626 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-----GSC--------AGVFKCQSGATQMRFQPRLG 692 (834)
Q Consensus 626 ~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s-----~~~--------i~~~~~~~~i~~l~~sp~g~ 692 (834)
... +.++..|.+.|++++.+||+.. +++++.|.+|++||..- +.. .+++.....|.|+.++||++
T Consensus 444 ~~l-~Eti~AHdgaIWsi~~~pD~~g-~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 444 ASL-VETIRAHDGAIWSISLSPDNKG-FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred hhh-hhhhhccccceeeeeecCCCCc-eEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence 664 6777899999999999999875 45999999999999742 111 13445578899999999999
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003279 693 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 771 (834)
Q Consensus 693 ~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 771 (834)
+++++--|++|+||-+++-+....+.||.-+|.|+.++||++++++|+ |..|+||-+.-| .|-..+-.|...|.++
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG---DCHKS~fAHdDSvm~V 598 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG---DCHKSFFAHDDSVMSV 598 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc---hhhhhhhcccCceeEE
Confidence 999999999999999999999999999999999999999999999999 999999999888 7888999999999999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 772 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 772 afspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.|-|....+++++.|+.|+-||-..-+.+ .+.+|...|+|++.+|+|.+++++++|.+|++|.
T Consensus 599 ~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 599 QFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred EEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 99999999999999999999998887766 8899999999999999999999999999999995
No 35
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-29 Score=249.17 Aligned_cols=280 Identities=18% Similarity=0.344 Sum_probs=242.8
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEec
Q 003279 544 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 623 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 623 (834)
....+..|.++|.++.|+-||+|.++++.|.+|++|+...+.+++++.+|...|.+++.+.|+..|++|+.|+.|.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC--ceeeEeec-CCCeeEEEEecCCCEEEEEEcC
Q 003279 624 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKC-QSGATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 624 ~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~--~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~d 700 (834)
.+++. ++.+.+|.+.|+.+.|+.+. .++++|+.|..+++||.++. +++..+.. ...|.++.+. +..|++|+.|
T Consensus 89 ~TGkv-~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~D 164 (307)
T KOG0316|consen 89 NTGKV-DRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVD 164 (307)
T ss_pred ccCee-eeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccC
Confidence 99875 89999999999999999875 48889999999999999865 45555543 4667777775 4679999999
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCce--EEEEEeCCC
Q 003279 701 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF--HSCVFHPTF 777 (834)
Q Consensus 701 g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I--~svafspdg 777 (834)
|+++.||++.|.....+.+ .+|+|++|++|++.+.+++ |+++++.|-.++ +.+..+.+|.+.- ..+++....
T Consensus 165 GtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tG---klL~sYkGhkn~eykldc~l~qsd 239 (307)
T KOG0316|consen 165 GTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETG---KLLKSYKGHKNMEYKLDCCLNQSD 239 (307)
T ss_pred CcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchh---HHHHHhcccccceeeeeeeecccc
Confidence 9999999999987766654 4799999999999998888 999999999998 6777777776543 456778888
Q ss_pred CEEEEEEcCCeEEEEECCCCeEE-EeccCCCC-eEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 778 PSLLVIGCYETLELWNMTENKTL-TLSAHDKL-VSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 778 ~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~-V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
.+++.|+.||.|++||+.....+ .+..+... |.+++++|.-..|+++...+ +.+|
T Consensus 240 thV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~ 296 (307)
T KOG0316|consen 240 THVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG-DLFW 296 (307)
T ss_pred eeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCc-eece
Confidence 89999999999999999998887 56666666 89999999888777775433 4455
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.5e-30 Score=279.69 Aligned_cols=282 Identities=22% Similarity=0.400 Sum_probs=256.4
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC
Q 003279 546 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 625 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s 625 (834)
+.+..|+.+|.|+.|+|...+++++-..|.|.|||.++...++.+....-+|.+..|-...+++++|+.|..|+||+..+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC-ceeeEeecCC-CeeEEEEec-CCCEEEEEEcCCe
Q 003279 626 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQS-GATQMRFQP-RLGRILAAAIENY 702 (834)
Q Consensus 626 ~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~-~~i~~~~~~~-~i~~l~~sp-~g~~ll~~s~dg~ 702 (834)
.+. +..+..|.+.|.||+.+|..++ +.++++|-.|++||.+.+ .+..+|..+. -|.+++|.| |.+.+++++-|++
T Consensus 87 ~ek-V~~FeAH~DyIR~iavHPt~P~-vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT 164 (794)
T KOG0276|consen 87 GEK-VKTFEAHSDYIRSIAVHPTLPY-VLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT 164 (794)
T ss_pred cee-eEEeeccccceeeeeecCCCCe-EEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence 775 8999999999999999999774 559999999999999864 6777887654 489999999 5577999999999
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCCC--CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003279 703 ISILDVETQVCRLKLQGHKNQVHSVCWNTSG--EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 779 (834)
Q Consensus 703 I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg--~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~ 779 (834)
|+||.+....+..++++|...|+|+++-+.| .+|++|+ |.+|+|||..+. .|+.++.+|...|..++|+|.-+.
T Consensus 165 VKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk---~CV~TLeGHt~Nvs~v~fhp~lpi 241 (794)
T KOG0276|consen 165 VKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK---SCVQTLEGHTNNVSFVFFHPELPI 241 (794)
T ss_pred EEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH---HHHHHhhcccccceEEEecCCCcE
Confidence 9999999999999999999999999998755 5899998 779999999987 899999999999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 780 LLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 780 L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
|++|+.||+++||+..+-+.. .+.-....|+||+-.+.++.++.|.+.|.|.|
T Consensus 242 iisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 242 IISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 999999999999999888776 45556788999999999999999999888754
No 37
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=2.4e-29 Score=251.30 Aligned_cols=281 Identities=19% Similarity=0.252 Sum_probs=240.6
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC
Q 003279 547 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 626 (834)
Q Consensus 547 ~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~ 626 (834)
.+.||..+|+-|.|+.+|.+|++++.|.++.||-..+|+.+.++.+|.+.|+|+..+.+.++++||+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceeeeeccCCCCeEEEEEccCCCcEEEEEe----CCCcEEEEECC-------CCceeeEee-cCCCeeEEEEecCCCEE
Q 003279 627 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD----NNSEIRYWSIN-------NGSCAGVFK-CQSGATQMRFQPRLGRI 694 (834)
Q Consensus 627 ~~~i~~~~~h~~~V~sl~fspdg~~llasgs----~Dg~I~lwDl~-------s~~~i~~~~-~~~~i~~l~~sp~g~~l 694 (834)
+. +..+. ...+|..+.|+++|+.++++.. ..+.|.++|++ ..++...+. ..+.++.+.|.|-+..|
T Consensus 85 k~-la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 85 KQ-LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred cE-EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 75 44443 5678999999999887776553 35789999998 344454444 46779999999999999
Q ss_pred EEEEcCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEE
Q 003279 695 LAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 772 (834)
Q Consensus 695 l~~s~dg~I~iwDl~t~-~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sva 772 (834)
++|..+|.|.+||++++ +.+.....|...|+.+.+++|..++++++ |.+-++||+.+. .++.++.. ..++++.+
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl---~v~Kty~t-e~PvN~aa 238 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL---EVLKTYTT-ERPVNTAA 238 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce---eeEEEeee-ccccccee
Confidence 99999999999999998 55556677999999999999999999999 999999999987 66666664 67899999
Q ss_pred EeCCCCEEEEEEcCCeEEEE--ECCCCe------------EE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 773 FHPTFPSLLVIGCYETLELW--NMTENK------------TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 773 fspdg~~L~sgs~dg~I~Iw--dl~~~~------------~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
++|...+++.++.....-|- +.+.++ .+ .+.+|-++|++++|+|+|+..++|+.||.|+|.
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 99999988888775533222 223332 22 678999999999999999999999999999974
No 38
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1.3e-29 Score=262.94 Aligned_cols=285 Identities=19% Similarity=0.246 Sum_probs=247.1
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEec
Q 003279 544 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 623 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 623 (834)
.+..|..|++.|++|+.+|+.+++|||+.|....||++.++.....+.+|++.|+++.|+.+|.+||||+-+|.|+||+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCe
Q 003279 624 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENY 702 (834)
Q Consensus 624 ~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~ 702 (834)
.++.. ...+......|.-+.|+|.+. +|+.|+.||.|.+|.+.+....+.+. +..++++-.|.|+|++++++..||+
T Consensus 136 stg~~-~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 136 STGGE-QWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred ccCce-EEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 98775 444545667899999999755 77799999999999999976666665 4667999999999999999999999
Q ss_pred EEEEECCCCeEEEEEeCC-CCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee--------cCC---CceE
Q 003279 703 ISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS--------CTG---NKFH 769 (834)
Q Consensus 703 I~iwDl~t~~~~~~l~~h-~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~--------~~~---~~I~ 769 (834)
|++||++++.++..+... .....++.++..+..++.|+ ++.+++-+..++ +.+.... .+. ..|.
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg---KVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG---KVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccc---eEEEecCCCCccccccchhhhhhhh
Confidence 999999999998888742 34567889999999999888 888888888777 3333333 222 3344
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 770 SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 770 svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.+.++..-+..++|+-||+|.|||+...++...-.|...|+.+.|.+ ..+|++++.||.|++||
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD 354 (399)
T ss_pred hcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence 55566667888999999999999999999888889999999999998 78999999999999997
No 39
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=3.5e-31 Score=271.72 Aligned_cols=266 Identities=21% Similarity=0.400 Sum_probs=232.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCce
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 629 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~ 629 (834)
...+.|+|+.+. ...+++|..|.+|+|||..+..++..+.+|++.|.|+.|. .+.|++||.|.+|+|||+.+++ +
T Consensus 195 e~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge-~ 269 (499)
T KOG0281|consen 195 ENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE-P 269 (499)
T ss_pred ccCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc-h
Confidence 355679999996 4479999999999999999999999999999999999995 5699999999999999999876 4
Q ss_pred eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceee---Eee-cCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003279 630 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG---VFK-CQSGATQMRFQPRLGRILAAAIENYISI 705 (834)
Q Consensus 630 i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~---~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~i 705 (834)
+.++.+|...|..+.|+ +.++++|+.|.+|.+||+.....+. .+. +...|+.+.|+. ++|++++.|.+|++
T Consensus 270 l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikv 344 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKV 344 (499)
T ss_pred hhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEE
Confidence 88999999999999998 4488899999999999998765322 222 345677787764 59999999999999
Q ss_pred EECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003279 706 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 784 (834)
Q Consensus 706 wDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs 784 (834)
|++.+++++.++.+|...|.|+.+ .++++++|+ |.+|++||+..+ .++..+.+|+.-|.++.|.. +.|++|+
T Consensus 345 W~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G---~cLRvLeGHEeLvRciRFd~--krIVSGa 417 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRFDN--KRIVSGA 417 (499)
T ss_pred Eeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc---HHHHHHhchHHhhhheeecC--ceeeecc
Confidence 999999999999999999999887 589999999 999999999998 89999999999999999964 4799999
Q ss_pred cCCeEEEEECCCCeE----------EEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 785 CYETLELWNMTENKT----------LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 785 ~dg~I~Iwdl~~~~~----------~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.||+|+|||+..+.- ..+..|.+.|..+.|. ...|++++.|.+|-|||
T Consensus 418 YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 418 YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWD 475 (499)
T ss_pred ccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEE
Confidence 999999999976531 1567899999999986 56799999999999997
No 40
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3e-29 Score=279.07 Aligned_cols=308 Identities=20% Similarity=0.280 Sum_probs=258.7
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
..+++|-.|+.|++|..... ....++.||...|+++.|+..|..||+|+.|+.|.|||+-.
T Consensus 78 l~lAVGYaDGsVqif~~~s~-------------------~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~ 138 (888)
T KOG0306|consen 78 LLLAVGYADGSVQIFSLESE-------------------EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVG 138 (888)
T ss_pred ceEEEEecCceEEeeccCCC-------------------ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEecc
Confidence 46799999999999954432 23567889999999999999999999999999999999988
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC------------------------------------
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD------------------------------------ 627 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~------------------------------------ 627 (834)
..-...+++|++.|+..-|..+.++|+++|.|+.|++||+++..
T Consensus 139 E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L 218 (888)
T KOG0306|consen 139 EEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWEL 218 (888)
T ss_pred ceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEe
Confidence 78888888998888888888777788888888888888876100
Q ss_pred --------------------------------------------------------------------------------
Q 003279 628 -------------------------------------------------------------------------------- 627 (834)
Q Consensus 628 -------------------------------------------------------------------------------- 627 (834)
T Consensus 219 ~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e 298 (888)
T KOG0306|consen 219 AFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEE 298 (888)
T ss_pred ecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccc
Confidence
Q ss_pred -----------------------------------ce------------------------------eeeeccCCCCeEE
Q 003279 628 -----------------------------------YS------------------------------LRTFTGHSTTVMS 642 (834)
Q Consensus 628 -----------------------------------~~------------------------------i~~~~~h~~~V~s 642 (834)
.. ...+.+|...|.+
T Consensus 299 ~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRs 378 (888)
T KOG0306|consen 299 NEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRS 378 (888)
T ss_pred cccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeE
Confidence 00 0123357777888
Q ss_pred EEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 003279 643 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN 722 (834)
Q Consensus 643 l~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~ 722 (834)
++++.+.. +++++ ..+.|++|+..+.+|++++.+. .+.+..|.|.++++++|...|.+.+||+.+...+.++..|.+
T Consensus 379 l~vS~d~~-~~~Sg-a~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdg 455 (888)
T KOG0306|consen 379 LCVSSDSI-LLASG-AGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDG 455 (888)
T ss_pred EEeecCce-eeeec-CCCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcccc
Confidence 88887643 44444 4789999999999999999985 888999999999999999999999999999999999999999
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC-----CceeEE----EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003279 723 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGS-----KGECIH----ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 792 (834)
Q Consensus 723 ~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~-----~~~~i~----~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iw 792 (834)
.|.+++.+||++.+++++ |.+|++||+.--. ..+.+. ..-.-...|.++.+|||+++|+++--|.+|+||
T Consensus 456 aIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVy 535 (888)
T KOG0306|consen 456 AIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVY 535 (888)
T ss_pred ceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEE
Confidence 999999999999999999 9999999975311 111111 111235679999999999999999999999999
Q ss_pred ECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 793 NMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 793 dl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
-+++-+.. .+.+|.-+|.|+.++||+++++|||.|.+|+||
T Consensus 536 flDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 536 FLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW 577 (888)
T ss_pred EecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence 99998876 899999999999999999999999999999999
No 41
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=3.3e-28 Score=255.80 Aligned_cols=266 Identities=30% Similarity=0.538 Sum_probs=236.1
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
.++++++.|+.+.+|...... ....+.+|...|.++.|++++++|++++.||.|++||+.+
T Consensus 22 ~~l~~~~~~g~i~i~~~~~~~-------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 22 KLLATGSGDGTIKVWDLETGE-------------------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred CEEEEeecCcEEEEEEeeCCC-------------------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 678889999999999654331 3456678999999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 663 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 663 (834)
++.+..+..|...|.++.|++++.++++++.|+.|++||+.+.+ ....+..|...|.+++|+|++. ++++++.|+.|+
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~ 160 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-CLTTLRGHTDWVNSVAFSPDGT-FVASSSQDGTIK 160 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-EEEEeccCCCcEEEEEEcCcCC-EEEEEcCCCcEE
Confidence 88888898999999999999998899998889999999998654 3666778999999999999854 676777799999
Q ss_pred EEECCCCceeeEeecCC-CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C
Q 003279 664 YWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D 741 (834)
Q Consensus 664 lwDl~s~~~i~~~~~~~-~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-D 741 (834)
+||+++++.+..+..+. .+.++.|+|++..+++++.++.|++||++++..+..+..|...+.+++|++++.++++++ |
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 240 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED 240 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCC
Confidence 99999888887777544 799999999999999999999999999999998888878999999999999999999998 9
Q ss_pred CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003279 742 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 793 (834)
Q Consensus 742 g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwd 793 (834)
+.|++||+.++ ..+..+..+...+.+++|++++.+|++++.|+.|++|+
T Consensus 241 ~~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 241 GTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEcCCc---eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999999876 66677778888999999999999999999999999996
No 42
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=7e-29 Score=285.08 Aligned_cols=272 Identities=27% Similarity=0.441 Sum_probs=236.8
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 581 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~ 581 (834)
..+++++++.|+.+++|....... .....+.+|...|.+++|+||+++|++++.|++|+|||+
T Consensus 170 ~g~~l~~~~~~~~i~~~~~~~~~~-----------------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 170 DGRALAAASSDGLIRIWKLEGIKS-----------------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred CCCeEEEccCCCcEEEeecccccc-----------------hhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence 336789999999999996622210 234555899999999999999999999999999999999
Q ss_pred -CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC
Q 003279 582 -ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 660 (834)
Q Consensus 582 -~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg 660 (834)
..+..++++.+|...|++++|+|+++++++|+.|++|+|||+++++ ++..+.+|...|++++|++++. ++++++.|+
T Consensus 233 ~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~is~~~f~~d~~-~l~s~s~d~ 310 (456)
T KOG0266|consen 233 KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDGISGLAFSPDGN-LLVSASYDG 310 (456)
T ss_pred cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe-EEEeeeccCCceEEEEECCCCC-EEEEcCCCc
Confidence 5668999999999999999999999999999999999999999854 6899999999999999999977 555778899
Q ss_pred cEEEEECCCCc--eeeEeecC--C-CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCC---EEEEEEcCC
Q 003279 661 EIRYWSINNGS--CAGVFKCQ--S-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ---VHSVCWNTS 732 (834)
Q Consensus 661 ~I~lwDl~s~~--~i~~~~~~--~-~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~---I~sl~~spd 732 (834)
.|++||+.++. +...+... . .+.++.|+|++.++++++.|+.+++||+..+.++..+.+|... +.+...++.
T Consensus 311 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (456)
T KOG0266|consen 311 TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTG 390 (456)
T ss_pred cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCC
Confidence 99999999998 45555432 2 5799999999999999999999999999999999999998875 344456789
Q ss_pred CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEE--cCCeEEEEECC
Q 003279 733 GEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIG--CYETLELWNMT 795 (834)
Q Consensus 733 g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-~~~I~svafspdg~~L~sgs--~dg~I~Iwdl~ 795 (834)
+.++++++ |+.|++||+.++ ..+..+..| ...+..+.+++...++++++ .|+.|++|...
T Consensus 391 ~~~i~sg~~d~~v~~~~~~s~---~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 391 GKLIYSGSEDGSVYVWDSSSG---GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCeEEEEeCCceEEEEeCCcc---chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 99999999 999999999986 677778888 88899999999999999988 67899999754
No 43
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=3.5e-30 Score=254.73 Aligned_cols=281 Identities=21% Similarity=0.263 Sum_probs=248.9
Q ss_pred EEecCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 546 QLIPASTSKVESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSp---dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
.+..||+.+|..++||| +|-+|++++.|+.-.+-+-++|.-+.++.+|.+.|+..+++.+-..-++++.|-+-+|||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 34579999999999986 898999999999999999999999999999999999999999988999999999999999
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc-eeeEe-ecCCCeeEEEEecCCCEEEEEEcC
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVF-KCQSGATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~-~i~~~-~~~~~i~~l~~sp~g~~ll~~s~d 700 (834)
.-++.. +..+. |..-|..++|+.|.+++| +|+.+..++|||++..+ +...+ .+.+.|..+.|....+.|++.+.|
T Consensus 88 a~tgde-lhsf~-hkhivk~~af~~ds~~ll-tgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd 164 (334)
T KOG0278|consen 88 AVTGDE-LHSFE-HKHIVKAVAFSQDSNYLL-TGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADD 164 (334)
T ss_pred hhhhhh-hhhhh-hhheeeeEEecccchhhh-ccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccC
Confidence 998775 55544 888899999999977555 99999999999998654 22333 356789999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 003279 701 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 780 (834)
Q Consensus 701 g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L 780 (834)
+.|++||.+++..+.++. .+.+|+++.++++|++|.++..+.|++||..+. ..+..+.. ...|.+..++|+...+
T Consensus 165 ~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf---~~lKs~k~-P~nV~SASL~P~k~~f 239 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF---GLLKSYKM-PCNVESASLHPKKEFF 239 (334)
T ss_pred CceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccc---cceeeccC-ccccccccccCCCceE
Confidence 999999999999999987 678899999999999999988889999999887 44544443 4568899999999999
Q ss_pred EEEEcCCeEEEEECCCCeEEEe--ccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 781 LVIGCYETLELWNMTENKTLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 781 ~sgs~dg~I~Iwdl~~~~~~~l--~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++|+.|..++.||..+++.+.. .+|.++|.|+.|+|||...++|+.||+|+||.
T Consensus 240 VaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 240 VAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred EecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 9999999999999999998833 79999999999999999999999999999993
No 44
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=5.4e-29 Score=248.17 Aligned_cols=282 Identities=17% Similarity=0.265 Sum_probs=250.6
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE--EeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEe
Q 003279 546 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD 622 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~--~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWD 622 (834)
+.+.+|...|.+++|+.+|..|++|+.|+++.||+++..+... ...+|.+.|-.++|+| ....|++++.|++|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5677999999999999999999999999999999998776554 3468999999999998 467899999999999999
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCe
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 702 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~ 702 (834)
++.++....+ ... ..=.-+.|+|+|. .++.++.|..|.+.|.++.+..........+..++|+.++..++.....|.
T Consensus 94 ~r~~k~~~~i-~~~-~eni~i~wsp~g~-~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 94 IRSGKCTARI-ETK-GENINITWSPDGE-YIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred eccCcEEEEe-ecc-CcceEEEEcCCCC-EEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 9987754333 322 3334578999988 455788899999999999999988888888999999988888888888899
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 003279 703 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 781 (834)
Q Consensus 703 I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~ 781 (834)
|.|......+++..++.|.....||.|+|+|+|+|+|+ |-.+.+||+... .|++.+..+.-+|..+.|+.+|++|+
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL---iC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL---ICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh---hhheeeccccCceEEEEeccCcceee
Confidence 99999999999999999999999999999999999999 999999999876 78889999999999999999999999
Q ss_pred EEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecC---------CcEEEe
Q 003279 782 VIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD---------KCVKIW 833 (834)
Q Consensus 782 sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~D---------G~I~IW 833 (834)
+++.|..|-|-++++|..+.-..++++...++|+|...+||-+++| |.|+||
T Consensus 248 SaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 248 SASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred ccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence 9999999999999999999888999999999999999999988765 567765
No 45
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.4e-28 Score=268.84 Aligned_cols=269 Identities=20% Similarity=0.295 Sum_probs=240.7
Q ss_pred cCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003279 500 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 579 (834)
Q Consensus 500 ~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IW 579 (834)
...+.++.++-..+.|.+|.-... ..++.+.-..-+|.++.|-.-.+++++|+.|..|+||
T Consensus 22 HPtePw~la~LynG~V~IWnyetq-------------------tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 22 HPTEPWILAALYNGDVQIWNYETQ-------------------TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVF 82 (794)
T ss_pred CCCCceEEEeeecCeeEEEecccc-------------------eeeeeeeecccchhhheeeeccceEEEecCCceEEEE
Confidence 334578888999999999954332 3456677777889999999999999999999999999
Q ss_pred eCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC
Q 003279 580 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 659 (834)
Q Consensus 580 d~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D 659 (834)
+..+++.+..++.|.+.|.||+.+|...+++|+|.|-+|++||.+..-.+..++.+|...|.+++|.|....-|++++-|
T Consensus 83 nynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLD 162 (794)
T KOG0276|consen 83 NYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLD 162 (794)
T ss_pred ecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecc
Confidence 99999999999999999999999999999999999999999999988778899999999999999999999999999999
Q ss_pred CcEEEEECCCCceeeEeec-CCCeeEEEEecCC--CEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEE
Q 003279 660 SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRL--GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL 736 (834)
Q Consensus 660 g~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g--~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~L 736 (834)
++|++|.+....+..++.. ..+|+|++|-+.+ .++++|+.|..|+|||..+..|+.++.+|...|..++|+|.-.++
T Consensus 163 rTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpii 242 (794)
T KOG0276|consen 163 RTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPII 242 (794)
T ss_pred ccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEE
Confidence 9999999999988888875 6679999998854 689999999999999999999999999999999999999999999
Q ss_pred EEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003279 737 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 790 (834)
Q Consensus 737 asgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~ 790 (834)
++|+ ||+|+||+..+- +....+.-....+++++-.+.+..+++|..+|.|.
T Consensus 243 isgsEDGTvriWhs~Ty---~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 243 ISGSEDGTVRIWNSKTY---KLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred EEecCCccEEEecCcce---ehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence 9999 999999998876 45556666678899999988888888877776543
No 46
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=6.3e-30 Score=260.14 Aligned_cols=280 Identities=23% Similarity=0.354 Sum_probs=245.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe--------ccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--------EEHTQWITDVRFSPSLSRLATSSADRTVRVW 621 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l--------~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 621 (834)
+...-+.|..|||||.||++|+.||.|.|||..+|+....+ --+..+|.|++|+.|...||+|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 44556889999999999999999999999999998876554 3578899999999999999999999999999
Q ss_pred ecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC-CCeeEEEEecCCCEEEEEEcC
Q 003279 622 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 622 Dl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~-~~i~~l~~sp~g~~ll~~s~d 700 (834)
.+.++.+..+.-..|+..|+|+.|+.|+..++ +++.|.++++.-+.+|++++.+..+ +-|+...|.++|.++++++.|
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 99998864344458999999999999988766 8999999999999999999999864 458999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEeC--CCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCCceeEEEeec---CCCceEEEEE
Q 003279 701 NYISILDVETQVCRLKLQG--HKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSC---TGNKFHSCVF 773 (834)
Q Consensus 701 g~I~iwDl~t~~~~~~l~~--h~~~I~sl~~spd-g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~---~~~~I~svaf 773 (834)
|+|++|+.++.+|+.+++. ...+|.++..-|. -..+++|. .++|+|.++.. ..+..+.. .++.+.++++
T Consensus 370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG----QvVrsfsSGkREgGdFi~~~l 445 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG----QVVRSFSSGKREGGDFINAIL 445 (508)
T ss_pred ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc----eEEeeeccCCccCCceEEEEe
Confidence 9999999999999988875 4557888887774 45666777 88999999865 35555443 4577889999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 774 HPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 774 spdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+|.|.++++.+.|+.++.|.+.+|+.. .+..|+..|..++-+|..+.||+-+.||.+++|+
T Consensus 446 SpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 446 SPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999999999999999999877 6778999999999999999999999999999996
No 47
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.6e-29 Score=265.59 Aligned_cols=282 Identities=20% Similarity=0.341 Sum_probs=247.0
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--EEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 545 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
...+..|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+..+.|+.+.|.++++++++++.|+.+++|+
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence 35677899999999999998999999999999999987666 6788889999999999999999999999999999999
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCe
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 702 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~ 702 (834)
++.... ..++.+|.+.|+++.|...... +++|+.|.+|++||+....|.+++-..+.+..|+.. ...++++..|+.
T Consensus 248 vd~~r~-~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~Dkk 323 (459)
T KOG0288|consen 248 VDSLRL-RHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKK 323 (459)
T ss_pred ccchhh-hhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccc
Confidence 998664 7889999999999999876544 779999999999999999999888877777777776 356788888999
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC----CCceEEEEEeCCC
Q 003279 703 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT----GNKFHSCVFHPTF 777 (834)
Q Consensus 703 I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~----~~~I~svafspdg 777 (834)
|++||.++..++.....+. .|+++..++++..|.+++ |+++.++|+++. .....+... ....+.++|||++
T Consensus 324 vRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~---eI~~~~sA~g~k~asDwtrvvfSpd~ 399 (459)
T KOG0288|consen 324 VRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK---EIRQTFSAEGFKCASDWTRVVFSPDG 399 (459)
T ss_pred eEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccc---cEEEEeeccccccccccceeEECCCC
Confidence 9999999999999988665 999999999999999888 999999999987 444444432 2447889999999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEE-ecc-CC-CCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 778 PSLLVIGCYETLELWNMTENKTLT-LSA-HD-KLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 778 ~~L~sgs~dg~I~Iwdl~~~~~~~-l~~-h~-~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.|+++|+.||.|+||++.++++.. +.. +. ..|++++|+|.|..|++++.++.+.+|.
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999999999999999873 332 22 3699999999999999999999999994
No 48
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.6e-28 Score=276.43 Aligned_cols=282 Identities=21% Similarity=0.360 Sum_probs=249.5
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC
Q 003279 548 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 627 (834)
Q Consensus 548 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~ 627 (834)
+...+..|..++|+|...+++++-..|.|.+||..=+.++..|.+|.++|..|+|+|...++++|+.|..|+||++.+.+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence 44566789999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCC-CeeEEEEecCCCEEEEEEcCCeEEEE
Q 003279 628 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISIL 706 (834)
Q Consensus 628 ~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~-~i~~l~~sp~g~~ll~~s~dg~I~iw 706 (834)
++.++.+|-+.|..+.|++.-.. ++++++|-+|+||+..+++++..+..+. -|.|..|+|....+++++-|-+|+||
T Consensus 85 -clftL~GHlDYVRt~~FHheyPW-IlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 85 -CLFTLLGHLDYVRTVFFHHEYPW-ILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred -ehhhhccccceeEEeeccCCCce-EEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence 58899999999999999999775 5599999999999999999999998654 59999999999999999999999999
Q ss_pred ECCCC-----------------------------eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCce
Q 003279 707 DVETQ-----------------------------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 756 (834)
Q Consensus 707 Dl~t~-----------------------------~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~ 756 (834)
|+..- .....+++|...|+-++|+|.-.+|++|+ |..|++|.+...+. -
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa-W 241 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-W 241 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc-e
Confidence 98521 12345678999999999999999999999 78999999876533 4
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 757 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 757 ~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
.+.+..+|.+.|.++.|+|....|++.+.|++|+|||+...+.+ .+....+..+.++.+|..+++|+|-+.| +.||
T Consensus 242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG-m~VF 318 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG-MIVF 318 (1202)
T ss_pred eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCc-eEEE
Confidence 56677889999999999999999999999999999999998877 5666678899999999999888775444 5554
No 49
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=8.8e-28 Score=243.86 Aligned_cols=267 Identities=20% Similarity=0.342 Sum_probs=231.7
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
.++++|+.|..|.+|...++.+. +..+++|.+.|..+.|.+|+..|++++.|++|+.||+++
T Consensus 60 s~~aSgG~Dr~I~LWnv~gdceN------------------~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 60 SCFASGGSDRAIVLWNVYGDCEN------------------FWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred CeEeecCCcceEEEEeccccccc------------------eeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 68899999999999976655332 456679999999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 662 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 662 (834)
|+.++.+++|.+.|+.+.-+.-| .++.+++.|++++|||+++... +.++. ....++++.|...+..++ +|+-|+.|
T Consensus 122 G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-~~t~~-~kyqltAv~f~d~s~qv~-sggIdn~i 198 (338)
T KOG0265|consen 122 GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-IKTFE-NKYQLTAVGFKDTSDQVI-SGGIDNDI 198 (338)
T ss_pred ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch-hhccc-cceeEEEEEeccccccee-eccccCce
Confidence 99999999999999999854434 4677889999999999997543 44443 457799999998877655 89999999
Q ss_pred EEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC----eEEEEEeCCCC----CEEEEEEcCCC
Q 003279 663 RYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ----VCRLKLQGHKN----QVHSVCWNTSG 733 (834)
Q Consensus 663 ~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~----~~~~~l~~h~~----~I~sl~~spdg 733 (834)
++||++.+....++.. .+.|+.+..+++|.++++-+.|.++++||++-. .++..+.+|.. ....++|+|++
T Consensus 199 kvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~ 278 (338)
T KOG0265|consen 199 KVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG 278 (338)
T ss_pred eeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCC
Confidence 9999999999998885 567999999999999999999999999999853 56777777533 34578999999
Q ss_pred CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 734 EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 734 ~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
.++.+++ |..+++||..+. .++..+.+|.+.|.++.|+|..++|.+++.|.+|++=++
T Consensus 279 ~~i~ags~dr~vyvwd~~~r---~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 279 TKITAGSADRFVYVWDTTSR---RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred CccccccccceEEEeecccc---cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 9999999 999999999876 789999999999999999999999999999999987543
No 50
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=7.7e-30 Score=261.84 Aligned_cols=266 Identities=20% Similarity=0.406 Sum_probs=228.5
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
+..+++|..|.+|++|+..+- ...+.+.||++.|.|+.|. .+.|++|+.|.+|+|||+.
T Consensus 207 D~kiVSGlrDnTikiWD~n~~-------------------~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~ 265 (499)
T KOG0281|consen 207 DEKIVSGLRDNTIKIWDKNSL-------------------ECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVN 265 (499)
T ss_pred chhhhcccccCceEEeccccH-------------------HHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEecc
Confidence 456789999999999955433 3456788999999999996 5699999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc--eeeeeccCCCCeEEEEEccCCCcEEEEEeCCC
Q 003279 583 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 660 (834)
Q Consensus 583 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~--~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg 660 (834)
+++++.++-+|.+.|..+.|+. .+++|+|.|.+|.+||+..+.. ..+.+.+|...|+.+.|+ ..++++++.|.
T Consensus 266 tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDR 340 (499)
T KOG0281|consen 266 TGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDR 340 (499)
T ss_pred CCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCc
Confidence 9999999999999999999974 5999999999999999987653 236778999999999998 34888999999
Q ss_pred cEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 003279 661 EIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 739 (834)
Q Consensus 661 ~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasg 739 (834)
+|++|++.++++++++.. ..+|.|+.+ .++.+++|++|.+|++||+..|.++..+++|+.-|.|+.|+ .+.+++|
T Consensus 341 TikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSG 416 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSG 416 (499)
T ss_pred eEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeec
Confidence 999999999999999875 455777665 46889999999999999999999999999999999999995 6678888
Q ss_pred e-CCeEEEEEcCCCCCc------eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 740 S-DELVRVWSIGSGSKG------ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 740 s-Dg~I~IwDl~s~~~~------~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
. ||+|+|||+..+... .|+..+..|.+.|..+.|.. ..|++++.|.+|.|||..++...
T Consensus 417 aYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~--fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 417 AYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE--FQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred cccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc--eEEEeccCCCeEEEEEcCCCCcc
Confidence 8 999999999876432 25666777888999999864 46889999999999999877654
No 51
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.6e-27 Score=238.98 Aligned_cols=270 Identities=21% Similarity=0.379 Sum_probs=220.6
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEe-cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 581 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l-~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~ 581 (834)
..++++++.|+.|++|.... +.++.....+ .+|+..|.+|+|+|.|++||+|+.|.++.||.-
T Consensus 27 g~ilAscg~Dk~vriw~~~~----------------~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k 90 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSS----------------GDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKK 90 (312)
T ss_pred ceEEEeecCCceEEEEecCC----------------CCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeec
Confidence 35899999999999996543 1123344444 489999999999999999999999999999975
Q ss_pred C--CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC--ceeeeeccCCCCeEEEEEccCCCcEEEEEe
Q 003279 582 E--SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 657 (834)
Q Consensus 582 ~--t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~--~~i~~~~~h~~~V~sl~fspdg~~llasgs 657 (834)
. +.+++.++++|...|.|++|+++|.+||||+.|+.|.||.+..+. .+...+..|...|..+.|+|... +|++++
T Consensus 91 ~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~S 169 (312)
T KOG0645|consen 91 EDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLFSCS 169 (312)
T ss_pred CCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-eeEEec
Confidence 5 457889999999999999999999999999999999999998443 35678899999999999999844 888999
Q ss_pred CCCcEEEEECC-C--CceeeEeecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCC
Q 003279 658 NNSEIRYWSIN-N--GSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG 733 (834)
Q Consensus 658 ~Dg~I~lwDl~-s--~~~i~~~~~~-~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg 733 (834)
.|.+|++|+-. . ..++.++..+ ..+.+++|++.|..+++++.|++|+||-..+.-. ..|...++.+.|. .
T Consensus 170 YDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~--~ 243 (312)
T KOG0645|consen 170 YDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWD--N 243 (312)
T ss_pred cCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceEeeeec--c
Confidence 99999999876 2 3567777654 4799999999999999999999999998663211 1278899999998 4
Q ss_pred CEEEEEe-CCeEEEEEcCCCCC---ce-eEEEeecCCCceEEEEEeCC-CCEEEEEEcCCeEEEEECC
Q 003279 734 EYLASVS-DELVRVWSIGSGSK---GE-CIHELSCTGNKFHSCVFHPT-FPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 734 ~~Lasgs-Dg~I~IwDl~s~~~---~~-~i~~~~~~~~~I~svafspd-g~~L~sgs~dg~I~Iwdl~ 795 (834)
..|++++ |+.|++|....... .+ ....-..|...|+++.|.|. ...|++++.||.|++|.+.
T Consensus 244 ~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 244 GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 4566666 99999998765311 11 12234568889999999995 6789999999999999864
No 52
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.8e-27 Score=240.35 Aligned_cols=282 Identities=22% Similarity=0.297 Sum_probs=237.7
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC--CCeEEEE
Q 003279 544 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 621 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~--Dg~I~IW 621 (834)
..+.++.-.+.|+++.|+++|.+|++++.|.+|+|||..+++.+.++..+...|..++|......++.++. |.+|+..
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence 34455566788999999999999999999999999999999999999999899999999888778877776 8899999
Q ss_pred ecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCC
Q 003279 622 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 701 (834)
Q Consensus 622 Dl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg 701 (834)
++.+.++ ++.+.||...|++|+.+|-++ .+++++.|++|++||++..+|...+.. ..-..++|+|.|-.++++...+
T Consensus 86 sl~dNky-lRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~-~~~pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 86 SLHDNKY-LRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNL-SGRPIAAFDPEGLIFALANGSE 162 (311)
T ss_pred EeecCce-EEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEec-CCCcceeECCCCcEEEEecCCC
Confidence 9998776 999999999999999999975 666999999999999998888877765 4456689999988888888888
Q ss_pred eEEEEECCCC--eEEEEEe---CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCC---ceEEEE
Q 003279 702 YISILDVETQ--VCRLKLQ---GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN---KFHSCV 772 (834)
Q Consensus 702 ~I~iwDl~t~--~~~~~l~---~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~---~I~sva 772 (834)
.|++||++.- .+..++. +.....+.+.|+|||++|+.+. .+.+++.|.-+| ..+..+..+.. ....++
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G---~~~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG---TVKSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC---cEeeeEeeccCCCCcceeEE
Confidence 9999999863 2333332 3466789999999999999888 789999999988 45555544432 337889
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeEE-Eecc-CCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 773 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 773 fspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~-h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
|+||+++|++++.||+|.+|++++++.+ .+.+ +.+++.++.|.|.-.++++++ ..+.+|
T Consensus 240 ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw 300 (311)
T KOG1446|consen 240 FTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFW 300 (311)
T ss_pred ECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEE
Confidence 9999999999999999999999999888 5555 789999999999877777664 467777
No 53
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=4.3e-28 Score=246.08 Aligned_cols=288 Identities=25% Similarity=0.383 Sum_probs=240.9
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC------------------CeEEEEeccCCCCeEEEEECC
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------------------FTVKSTLEEHTQWITDVRFSP 604 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t------------------~~~~~~l~~h~~~I~~l~fsp 604 (834)
.+...+..|..++.+.+|++||.++|+|+.|..|+|.|++. .-.++++..|.+.|+++.|+|
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 34566789999999999999999999999999999999761 135678889999999999999
Q ss_pred CCCEEEEEeCCCeEEEEecCCCCce-eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee----cC
Q 003279 605 SLSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQ 679 (834)
Q Consensus 605 dg~~Latgs~Dg~I~IWDl~s~~~~-i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~----~~ 679 (834)
...+|++++.|++|++||+...... .........+|.+|.|+|.|++++ .|..-..+++||+++.+|...-. +.
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecCcccccc
Confidence 9999999999999999999864321 112223567899999999988555 77778899999999988776543 35
Q ss_pred CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC-CC-CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCce
Q 003279 680 SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-HK-NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 756 (834)
Q Consensus 680 ~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~-h~-~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~ 756 (834)
+.|+++.+++.++..++++.||.|++||--+++|+.++.. |. ..|.+..|..+++||++.+ |..|++|.+.++ +
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~---R 338 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG---R 338 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC---c
Confidence 6799999999999999999999999999999999988864 54 4789999999999999988 999999999998 7
Q ss_pred eEEEeecCCC-----ceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEE--EeccCCCCeEEEEEeCCCCEEEEEecCC
Q 003279 757 CIHELSCTGN-----KFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDK 828 (834)
Q Consensus 757 ~i~~~~~~~~-----~I~svafspdg~~L~sgs~-dg~I~Iwdl~~~~~~--~l~~h~~~V~~lafspdg~~LaSgs~DG 828 (834)
++.++.+.+. --+...|.....+++.-.. .+.+.-||.++...+ .-.+|.+.+..+.-+|.+.-+++|++|-
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence 7777765421 1234567777777776655 348999999988766 3458999999999999999999999999
Q ss_pred cEEEeC
Q 003279 829 CVKIWK 834 (834)
Q Consensus 829 ~I~IWd 834 (834)
.+++|.
T Consensus 419 raRFWy 424 (430)
T KOG0640|consen 419 RARFWY 424 (430)
T ss_pred eeeeee
Confidence 999993
No 54
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=1.2e-27 Score=247.00 Aligned_cols=280 Identities=18% Similarity=0.290 Sum_probs=240.5
Q ss_pred CCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCC
Q 003279 495 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK 574 (834)
Q Consensus 495 ~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg 574 (834)
-...++..+.|+++|+.|+++++|+.... ....++.||...|..+++|+-..||++++.|+
T Consensus 155 r~vavdP~n~wf~tgs~DrtikIwDlatg-------------------~LkltltGhi~~vr~vavS~rHpYlFs~gedk 215 (460)
T KOG0285|consen 155 RSVAVDPGNEWFATGSADRTIKIWDLATG-------------------QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDK 215 (460)
T ss_pred EEEeeCCCceeEEecCCCceeEEEEcccC-------------------eEEEeecchhheeeeeeecccCceEEEecCCC
Confidence 34455677899999999999999955433 34567889999999999999999999999999
Q ss_pred cEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEE
Q 003279 575 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 654 (834)
Q Consensus 575 ~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~lla 654 (834)
.|+.||++..+.++.+.+|-..|.|++.+|.-+.|+||+.|.+++|||+++.. .+..+.+|..+|..+.+.|.+.. ++
T Consensus 216 ~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~V~~V~~~~~dpq-vi 293 (460)
T KOG0285|consen 216 QVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNPVASVMCQPTDPQ-VI 293 (460)
T ss_pred eeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEecCCCCcceeEEeecCCCc-eE
Confidence 99999999999999999999999999999999999999999999999999854 58999999999999999988664 55
Q ss_pred EEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCC
Q 003279 655 SCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG 733 (834)
Q Consensus 655 sgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg 733 (834)
+|+.|++|++||++.++...++.+ ...+.+++.+|....|++++ ...|+-|++..+..+..+.+|...|.+++.+.|+
T Consensus 294 t~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~ 372 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-PDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG 372 (460)
T ss_pred EecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-CccceeccCCccchhhccccccceeeeeeeccCc
Confidence 999999999999999998887775 45699999999866655555 4678999999999999999999999999999888
Q ss_pred CEEEEEeCCeEEEEEcCCCCCceeEEEeec-----CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 734 EYLASVSDELVRVWSIGSGSKGECIHELSC-----TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 734 ~~LasgsDg~I~IwDl~s~~~~~~i~~~~~-----~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
-+++.+..|.+.+||.+++........... ....|.+.+|...|..|+++..|.+|++|.-++
T Consensus 373 v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 373 VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 666555588999999999865444433222 245689999999999999999999999997544
No 55
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=2.3e-27 Score=247.23 Aligned_cols=278 Identities=21% Similarity=0.326 Sum_probs=235.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCC---CEEEEEeCCCeEEEEecCCC
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SRLATSSADRTVRVWDTENP 626 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg---~~Latgs~Dg~I~IWDl~s~ 626 (834)
-|.+.|.++... +++|++|++||.++|||. .|+....+.+|.++|.+++|.-.. ..|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 488889988887 779999999999999994 578899999999999988886533 35999999999999999876
Q ss_pred Ccee---eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC-------------------------ceeeEee-
Q 003279 627 DYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-------------------------SCAGVFK- 677 (834)
Q Consensus 627 ~~~i---~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~-------------------------~~i~~~~- 677 (834)
...+ ....+|...|-+++..+++. .+++|+.|..|.+|+..+. .++..+.
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 5432 33458999999999999976 6779999999999993211 1122222
Q ss_pred cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCce
Q 003279 678 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 756 (834)
Q Consensus 678 ~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~ 756 (834)
|...|.++.|++ ...+++++.|.+|++||+.++.++.++. ....+.|+..+|..++|++|+ |..|++||-+++....
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence 345688899988 6889999999999999999999988887 456899999999999999999 9999999999987767
Q ss_pred eEEEeecCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCCCe-EE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 757 CIHELSCTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTENK-TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 757 ~i~~~~~~~~~I~svafspdg~~-L~sgs~dg~I~Iwdl~~~~-~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
....+.+|.+.|.++.|+|...+ |++++.|+++++||+++.+ ++ .+.+|...|.++.|. ++.+|++|+.|.+|+|+
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIF 415 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEe
Confidence 78889999999999999998765 6678889999999999876 44 888999999999996 46799999999999997
Q ss_pred C
Q 003279 834 K 834 (834)
Q Consensus 834 d 834 (834)
+
T Consensus 416 ~ 416 (423)
T KOG0313|consen 416 K 416 (423)
T ss_pred c
Confidence 4
No 56
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=2.1e-26 Score=282.71 Aligned_cols=284 Identities=14% Similarity=0.226 Sum_probs=224.7
Q ss_pred CCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCC
Q 003279 496 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDK 574 (834)
Q Consensus 496 ~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg 574 (834)
...++....++++|+.|+.|++|........ . .... .....+. +...|.+++|++ ++.+||+++.||
T Consensus 488 ~i~fs~dg~~latgg~D~~I~iwd~~~~~~~----~------~~~~-~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg 555 (793)
T PLN00181 488 AIGFDRDGEFFATAGVNKKIKIFECESIIKD----G------RDIH-YPVVELA-SRSKLSGICWNSYIKSQVASSNFEG 555 (793)
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCccccc----c------cccc-cceEEec-ccCceeeEEeccCCCCEEEEEeCCC
Confidence 3444555688999999999999965331100 0 0000 0112233 346799999987 478999999999
Q ss_pred cEEEEeCCCCeEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEE
Q 003279 575 KAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 653 (834)
Q Consensus 575 ~I~IWd~~t~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~ll 653 (834)
+|+|||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.|++|++||+.++.. +..+..+ ..|.++.|++....+|
T Consensus 556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~~~~~~~-~~v~~v~~~~~~g~~l 633 (793)
T PLN00181 556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-IGTIKTK-ANICCVQFPSESGRSL 633 (793)
T ss_pred eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-EEEEecC-CCeEEEEEeCCCCCEE
Confidence 999999999999999999999999999997 789999999999999999987653 5555544 6799999976656688
Q ss_pred EEEeCCCcEEEEECCCCc-eeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC------CeEEEEEeCCCCCEE
Q 003279 654 CSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET------QVCRLKLQGHKNQVH 725 (834)
Q Consensus 654 asgs~Dg~I~lwDl~s~~-~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t------~~~~~~l~~h~~~I~ 725 (834)
++|+.||.|++||+++.+ .+..+. +...|.++.|. ++.+|++++.|+.|++||++. ..++..+.+|...+.
T Consensus 634 atgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~ 712 (793)
T PLN00181 634 AFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKN 712 (793)
T ss_pred EEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCee
Confidence 899999999999998765 344443 45679999997 678999999999999999974 356788999999999
Q ss_pred EEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcee--------E--EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 726 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGEC--------I--HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 726 sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~--------i--~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
+++|++++.+|++|+ |+.|++|+......... + .....+...|.+++|++++..|++++.+|.|+||++
T Consensus 713 ~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 713 FVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999999999 99999999865421100 0 011234567999999999999999999999999996
No 57
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.1e-27 Score=272.13 Aligned_cols=249 Identities=21% Similarity=0.323 Sum_probs=207.1
Q ss_pred eeeEEEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC--------------------------------C---
Q 003279 541 TFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--------------------------------F--- 584 (834)
Q Consensus 541 ~~~~~~~l~-gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t--------------------------------~--- 584 (834)
.+.....+. +|.+.|+++.||+||+|||+||.|+.|+||.+.. .
T Consensus 255 al~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 255 ALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISS 334 (712)
T ss_pred eeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccc
Confidence 334455666 9999999999999999999999999999996543 0
Q ss_pred -------------------------eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCC
Q 003279 585 -------------------------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT 639 (834)
Q Consensus 585 -------------------------~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~ 639 (834)
+++..+.+|.+.|.+|.|+.+ .+|+++|.|++|++|++.... ++..|. |.+.
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~-CL~~F~-Hndf 411 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE-CLKVFS-HNDF 411 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcc-eeeEEe-cCCe
Confidence 112234689999999999965 589999999999999999644 566665 9999
Q ss_pred eEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 003279 640 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 719 (834)
Q Consensus 640 V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~ 719 (834)
|+||+|+|..+.+|++|+-||.|+||++...+.+.......-|++++|.|+|.+.++|+.+|.+++|+....+....+.-
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 99999999999999999999999999999999998888889999999999999999999999999999998766544321
Q ss_pred --C------CCCEEEEEEcCCC--CEEEEEeCCeEEEEEcCCCCCceeEEEeecCC--CceEEEEEeCCCCEEEEEEcCC
Q 003279 720 --H------KNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKGECIHELSCTG--NKFHSCVFHPTFPSLLVIGCYE 787 (834)
Q Consensus 720 --h------~~~I~sl~~spdg--~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~--~~I~svafspdg~~L~sgs~dg 787 (834)
| ...|+.+.|.|.. ++|++..|..|+|||.+.. ..+..+++.. ..-....|+.||++|++++.|.
T Consensus 492 ~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs 568 (712)
T KOG0283|consen 492 RLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS 568 (712)
T ss_pred eeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch---hhhhhhcccccCCcceeeeEccCCCEEEEeecCc
Confidence 1 2279999998744 3666666999999999776 4555555432 3346778999999999999999
Q ss_pred eEEEEECC
Q 003279 788 TLELWNMT 795 (834)
Q Consensus 788 ~I~Iwdl~ 795 (834)
.|+||++.
T Consensus 569 ~VYiW~~~ 576 (712)
T KOG0283|consen 569 WVYIWKND 576 (712)
T ss_pred eEEEEeCC
Confidence 99999973
No 58
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=9.5e-29 Score=255.88 Aligned_cols=283 Identities=16% Similarity=0.303 Sum_probs=238.3
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 003279 541 TFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 619 (834)
Q Consensus 541 ~~~~~~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~ 619 (834)
.-..+..|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+....+..++..|.+.|..|++.. ..+++++.|++|+
T Consensus 55 akPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK 132 (433)
T KOG0268|consen 55 AKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVK 132 (433)
T ss_pred hccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCccee
Confidence 334567889999999999999977 6899999999999999999999999999999999999976 6899999999999
Q ss_pred EEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC-CCeeEEEEecCCCEEEEEE
Q 003279 620 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAA 698 (834)
Q Consensus 620 IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~-~~i~~l~~sp~g~~ll~~s 698 (834)
.|.++.+ ++.++.+ ...+..|+-+..+ ..+++|+. .|.|||..-..++..+... ..+.++.|+|....|++++
T Consensus 133 ~wk~~~~--p~~tilg-~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 133 QWKIDGP--PLHTILG-KSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASC 206 (433)
T ss_pred eeeccCC--cceeeec-ccccccccccccc-ccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeee
Confidence 9999863 4555553 4557777766553 47778864 5899999988888888864 5599999999776665555
Q ss_pred -cCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC
Q 003279 699 -IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 776 (834)
Q Consensus 699 -~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspd 776 (834)
+|+.|.+||++...++..+. -...-+.|||+|.+..+++++ |..++.||++... .++.....|...|.++.|+|.
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfspt 283 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPT 283 (433)
T ss_pred ccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhc--ccchhhcccceeEEEeccCCC
Confidence 89999999999998877665 344567899999777777777 8899999999764 677788899999999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEec--cCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 777 FPSLLVIGCYETLELWNMTENKTLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 777 g~~L~sgs~dg~I~Iwdl~~~~~~~l~--~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
|..+++|+.|.+|+||.+..+....+. .--..|.|+.||.|.++|++||+|+.|++|+
T Consensus 284 G~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 284 GQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred cchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 999999999999999999887665332 2235699999999999999999999999996
No 59
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=3.7e-27 Score=245.65 Aligned_cols=270 Identities=20% Similarity=0.344 Sum_probs=231.8
Q ss_pred cCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCC---EEEEEeCCCcE
Q 003279 500 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK---LLATGGHDKKA 576 (834)
Q Consensus 500 ~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~---~Lasgs~Dg~I 576 (834)
.....++.+|+.|+.+++|.... .....+.||+++|.+++|..... .|++++.|.++
T Consensus 112 ~~~~~~IltgsYDg~~riWd~~G--------------------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl 171 (423)
T KOG0313|consen 112 KGASKWILTGSYDGTSRIWDLKG--------------------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTL 171 (423)
T ss_pred cccCceEEEeecCCeeEEEecCC--------------------ceEEEEecCCcceeeeEEEecCCccceEEEecCCceE
Confidence 33478999999999999995533 24678889999999888855333 59999999999
Q ss_pred EEEeCCCCeEE----EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC------------------------Cc
Q 003279 577 VLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP------------------------DY 628 (834)
Q Consensus 577 ~IWd~~t~~~~----~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~------------------------~~ 628 (834)
++|-++.++.+ ....+|...|-+|...+++..+++||.|.+|.||+.... +.
T Consensus 172 ~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~ 251 (423)
T KOG0313|consen 172 RLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT 251 (423)
T ss_pred EEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence 99988876544 334599999999999999999999999999999993311 13
Q ss_pred eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 003279 629 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDV 708 (834)
Q Consensus 629 ~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl 708 (834)
++.++.+|..+|.++.|++ ...+++++.|.+|+.||+.++.++..+..+..+.|+.++|..+.|++|+.|..|++||.
T Consensus 252 P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DP 329 (423)
T KOG0313|consen 252 PLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDP 329 (423)
T ss_pred ceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCC
Confidence 4667889999999999998 34788999999999999999999999999999999999999999999999999999999
Q ss_pred CCC---eEEEEEeCCCCCEEEEEEcCCCCE-EEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003279 709 ETQ---VCRLKLQGHKNQVHSVCWNTSGEY-LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 783 (834)
Q Consensus 709 ~t~---~~~~~l~~h~~~I~sl~~spdg~~-Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sg 783 (834)
+++ .....|.+|.+.|.++.|+|...+ |++++ |+++++||+++.. .++..+..|...|.++.|... ..|++|
T Consensus 330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k--~plydI~~h~DKvl~vdW~~~-~~IvSG 406 (423)
T KOG0313|consen 330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK--APLYDIAGHNDKVLSVDWNEG-GLIVSG 406 (423)
T ss_pred CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC--CcceeeccCCceEEEEeccCC-ceEEec
Confidence 976 456788999999999999997765 55566 9999999999873 488899999999999999854 479999
Q ss_pred EcCCeEEEEEC
Q 003279 784 GCYETLELWNM 794 (834)
Q Consensus 784 s~dg~I~Iwdl 794 (834)
+.|.+|+|+.-
T Consensus 407 GaD~~l~i~~~ 417 (423)
T KOG0313|consen 407 GADNKLRIFKG 417 (423)
T ss_pred cCcceEEEecc
Confidence 99999999864
No 60
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=4.1e-26 Score=263.35 Aligned_cols=249 Identities=16% Similarity=0.209 Sum_probs=203.8
Q ss_pred EeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCCCc-------eeeeeccCCCCeE
Q 003279 570 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY-------SLRTFTGHSTTVM 641 (834)
Q Consensus 570 gs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~s~~~-------~i~~~~~h~~~V~ 641 (834)
|+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.+... ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 567889999998888888899999999999999996 78999999999999999976431 2346788999999
Q ss_pred EEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 003279 642 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK 721 (834)
Q Consensus 642 sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~ 721 (834)
+++|+|++..++++++.|+.|++||++++..+..+.+...|.+++|+++|..|++++.|+.|+|||++++..+..+.+|.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 99999998888889999999999999999888877777889999999999999999999999999999999999999998
Q ss_pred CCEEEE-----EEcCCCCEEEEEe-CC----eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003279 722 NQVHSV-----CWNTSGEYLASVS-DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 791 (834)
Q Consensus 722 ~~I~sl-----~~spdg~~Lasgs-Dg----~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~I 791 (834)
+.+.+. .|++++.+|++++ |+ .|+|||++..........+..+...+......+++.++++|+.|+.|++
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~ 289 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY 289 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence 765432 3458888888876 53 7999999964322222233333344444445566888899999999999
Q ss_pred EECCCCeEEEe--ccCCCCeEEEEEeCCC
Q 003279 792 WNMTENKTLTL--SAHDKLVSSLAASTVN 818 (834)
Q Consensus 792 wdl~~~~~~~l--~~h~~~V~~lafspdg 818 (834)
|++..+....+ ..+..++.+++|.|..
T Consensus 290 ~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 290 YQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEccCCcEEeecccccCCCccceEEcccc
Confidence 99988765433 3466788999999964
No 61
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=1.4e-28 Score=263.23 Aligned_cols=248 Identities=18% Similarity=0.299 Sum_probs=220.2
Q ss_pred CeEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 003279 584 FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 662 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 662 (834)
.+.+.++.+|+..|+++.|.| .+.+|++++.|+.|+||++.....+++++.+|..+|.+++|+.+|..+| +++.|+.|
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fL-S~sfD~~l 282 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFL-SASFDRFL 282 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeee-eeecceee
Confidence 355678899999999999999 7899999999999999999987778999999999999999999988666 99999999
Q ss_pred EEEECCCCceeeEeecCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-
Q 003279 663 RYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 740 (834)
Q Consensus 663 ~lwDl~s~~~i~~~~~~~~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs- 740 (834)
++||+++|+++..+.....++|+.|+|++ +.|++|+.|+.|+.||+++++.+.++..|-+.|..+.|-++|+.+++++
T Consensus 283 KlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 99999999999999999999999999998 8899999999999999999999999999999999999999999999998
Q ss_pred CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE----EeccCC--CCeEEEEE
Q 003279 741 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL----TLSAHD--KLVSSLAA 814 (834)
Q Consensus 741 Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~----~l~~h~--~~V~~laf 814 (834)
|+.++||+.+.....+.+.. .+.....+|..+|+++++++-+.|+.|.+|.+...-.+ .+.+|. +.-..+.|
T Consensus 363 dks~riWe~~~~v~ik~i~~--~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIAD--PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred CccEEEEEcCCCccchhhcc--hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 88999999988744333332 33455678899999999999999999999987554332 555664 55677899
Q ss_pred eCCCCEEEEEecCCcEEEeC
Q 003279 815 STVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 815 spdg~~LaSgs~DG~I~IWd 834 (834)
||||++|++|+.||.|.+||
T Consensus 441 SpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred cCCCCeEEeecCCccEEEee
Confidence 99999999999999999997
No 62
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.4e-27 Score=235.54 Aligned_cols=277 Identities=21% Similarity=0.341 Sum_probs=229.9
Q ss_pred EEEEEcC-CCCEEEEEe-------CCCcEEEEeCCCCeEEEEe--ccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecC
Q 003279 556 ESCHFSP-DGKLLATGG-------HDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 556 ~sl~fSp-dg~~Lasgs-------~Dg~I~IWd~~t~~~~~~l--~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~ 624 (834)
.++.||| -..+||++. ..|++.|.++...+-+..+ ..-.+.+.+++|+++ ...+++++.||+++|||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 5788998 223444432 3689999998644433332 235678999999995 5688999999999999998
Q ss_pred CCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecC-CCEEEEEEcCCe
Q 003279 625 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPR-LGRILAAAIENY 702 (834)
Q Consensus 625 s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~-g~~ll~~s~dg~ 702 (834)
....++..++.|...|.++.|++..+..+++++.|++|++|+......+.++.. ...|....|+|. .+.+++++.|+.
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 888899999999999999999998888888999999999999999999999886 455889999995 567888889999
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-CE
Q 003279 703 ISILDVETQVCRLKLQGHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PS 779 (834)
Q Consensus 703 I~iwDl~t~~~~~~l~~h~~~I~sl~~spd-g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg-~~ 779 (834)
+++||++..-....+..|...|.|+.|+.- ...|++++ |+.|++||+++-. .++.++.+|.-.|..+.|+|.. ..
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--~pl~eL~gh~~AVRkvk~Sph~~~l 249 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--TPLFELNGHGLAVRKVKFSPHHASL 249 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--ccceeecCCceEEEEEecCcchhhH
Confidence 999999976444558889999999999984 45677777 9999999999875 5788899999999999999976 45
Q ss_pred EEEEEcCCeEEEEECCCCeEE--EeccCCCCeEEEEEeC-CCCEEEEEecCCcEEEeC
Q 003279 780 LLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK 834 (834)
Q Consensus 780 L~sgs~dg~I~Iwdl~~~~~~--~l~~h~~~V~~lafsp-dg~~LaSgs~DG~I~IWd 834 (834)
|++++.|-+++|||.....-. +...|...|..+.|++ +..++|+++.|+.++||+
T Consensus 250 LaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 250 LASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred hhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 677788889999998865433 6668899999999998 456999999999999996
No 63
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-27 Score=250.61 Aligned_cols=271 Identities=20% Similarity=0.310 Sum_probs=233.7
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
.++|+++.|.+.-+|....+. .+....++.+|..+|.-+.||||.++|++++.|..+.+||+.+
T Consensus 237 kyLAsaSkD~Taiiw~v~~d~----------------~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~t 300 (519)
T KOG0293|consen 237 KYLASASKDSTAIIWIVVYDV----------------HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDT 300 (519)
T ss_pred eeEeeccCCceEEEEEEecCc----------------ceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCc
Confidence 799999999999999554331 2567889999999999999999999999999999999999999
Q ss_pred CeEEEEec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccC-CCCeEEEEEccCCCcEEEEEeCCCc
Q 003279 584 FTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSE 661 (834)
Q Consensus 584 ~~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h-~~~V~sl~fspdg~~llasgs~Dg~ 661 (834)
|.....+. +|...+.+++|.|||..+++|+.|+.|..||++... .....+- ...|.+++.++||+.+++++ .|..
T Consensus 301 gd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~dlait~Dgk~vl~v~-~d~~ 377 (519)
T KOG0293|consen 301 GDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVHDLAITYDGKYVLLVT-VDKK 377 (519)
T ss_pred chhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch--hhcccccccceeEEEEEcCCCcEEEEEe-cccc
Confidence 99887774 356889999999999999999999999999998543 3333332 25699999999999777555 6999
Q ss_pred EEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCC--EEEEEEcC-CCCEEEE
Q 003279 662 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ--VHSVCWNT-SGEYLAS 738 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~--I~sl~~sp-dg~~Las 738 (834)
|++|+.++......+..+.++++++++.+++++++.-.+..|++||++..+.+..+.||... |..-||-- +..++++
T Consensus 378 i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaS 457 (519)
T KOG0293|consen 378 IRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIAS 457 (519)
T ss_pred eeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEe
Confidence 99999999888888888899999999999999999999999999999998999999988753 44446654 4589999
Q ss_pred Ee-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCC
Q 003279 739 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTE 796 (834)
Q Consensus 739 gs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~-~L~sgs~dg~I~Iwdl~~ 796 (834)
|+ |+.|+||+..++ +.+.++.+|...|++++|+|..+ .+|+++.||+|+||....
T Consensus 458 GSED~kvyIWhr~sg---kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 458 GSEDSKVYIWHRISG---KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCceEEEEEccCC---ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 99 999999999998 89999999999999999999775 577888999999998754
No 64
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.3e-27 Score=230.61 Aligned_cols=266 Identities=21% Similarity=0.296 Sum_probs=230.3
Q ss_pred cCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003279 500 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 579 (834)
Q Consensus 500 ~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IW 579 (834)
....++..+.+.|++|++|..... ..++++.+|...|..++.+.|...|++|+.|+.|.+|
T Consensus 26 N~dGnY~ltcGsdrtvrLWNp~rg-------------------~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 26 NVDGNYCLTCGSDRTVRLWNPLRG-------------------ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred ccCCCEEEEcCCCceEEeeccccc-------------------ceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence 334467777778899999955433 3578889999999999999999999999999999999
Q ss_pred eCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC-ceeeeeccCCCCeEEEEEccCCCcEEEEEeC
Q 003279 580 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 658 (834)
Q Consensus 580 d~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~-~~i~~~~~h~~~V~sl~fspdg~~llasgs~ 658 (834)
|+++|+.++.+.+|.+.|+.++|+.+...+++|+.|.+|++||.++.. .++..+....+.|.+|... ++.+++|+.
T Consensus 87 DV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~ 163 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSV 163 (307)
T ss_pred EcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeecc
Confidence 999999999999999999999999999999999999999999998754 3677888888999999997 557889999
Q ss_pred CCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEE--EEEEcCCCCEE
Q 003279 659 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH--SVCWNTSGEYL 736 (834)
Q Consensus 659 Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~--sl~~spdg~~L 736 (834)
||+++.||++.|.....+- ..+|++++|+++++..++++.|+.|++.|-.+|+.+..+++|.+.-. ..+++....++
T Consensus 164 DGtvRtydiR~G~l~sDy~-g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV 242 (307)
T KOG0316|consen 164 DGTVRTYDIRKGTLSSDYF-GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHV 242 (307)
T ss_pred CCcEEEEEeecceeehhhc-CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeE
Confidence 9999999999998765543 47899999999999999999999999999999999999999987543 45677778899
Q ss_pred EEEe-CCeEEEEEcCCCCCceeEEEeecCCCc-eEEEEEeCCCCEEEEEEcCCeEEEE
Q 003279 737 ASVS-DELVRVWSIGSGSKGECIHELSCTGNK-FHSCVFHPTFPSLLVIGCYETLELW 792 (834)
Q Consensus 737 asgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~-I~svafspdg~~L~sgs~dg~I~Iw 792 (834)
++|+ ||.|++||+... ..+..+..+... +.++.++|.-..|+++...+ +.+|
T Consensus 243 ~sgSEDG~Vy~wdLvd~---~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~ 296 (307)
T KOG0316|consen 243 FSGSEDGKVYFWDLVDE---TQISKLSVVSTVIVTDLSCHPTMDDFITATGHG-DLFW 296 (307)
T ss_pred EeccCCceEEEEEeccc---eeeeeeccCCceeEEeeecccCccceeEecCCc-eece
Confidence 9999 999999999887 677778877777 89999999988787776655 4444
No 65
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=6.4e-27 Score=251.20 Aligned_cols=289 Identities=17% Similarity=0.260 Sum_probs=232.9
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE----EEEe-ccCCCCeEEEEECCCCCEEEEEeCCCe
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV----KSTL-EEHTQWITDVRFSPSLSRLATSSADRT 617 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~----~~~l-~~h~~~I~~l~fspdg~~Latgs~Dg~ 617 (834)
.....+.+|+..|.++++.|.|-.|++|+.|.+|++||+..... .+.+ ......|+++.|++.+..|++.+....
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 34467889999999999999999999999999999999864322 1222 234457999999999999999999999
Q ss_pred EEEEecCCCCc-----------eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc-eeeEeec------C
Q 003279 618 VRVWDTENPDY-----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKC------Q 679 (834)
Q Consensus 618 I~IWDl~s~~~-----------~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~-~i~~~~~------~ 679 (834)
++|+|-+.... .+...++|...++|.+|+|+.+..|++|+.||++++||++..+ ...+|++ .
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 99999764321 0123467999999999999999999999999999999998654 3444443 2
Q ss_pred CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe--E-EEEEeCCCC--CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC
Q 003279 680 SGATQMRFQPRLGRILAAAIENYISILDVETQV--C-RLKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 753 (834)
Q Consensus 680 ~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~--~-~~~l~~h~~--~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~ 753 (834)
-.++.++|+++++.|++|+.||.|.+||..... + ...-..|.. .|+||.||+||++|++-+ |+++++||++..+
T Consensus 318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 347899999999999999999999999986542 2 223345776 899999999999999988 9999999999875
Q ss_pred CceeEEEeec--CCCceEEEEEeCCCCEEEEEEc------CCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEE
Q 003279 754 KGECIHELSC--TGNKFHSCVFHPTFPSLLVIGC------YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 824 (834)
Q Consensus 754 ~~~~i~~~~~--~~~~I~svafspdg~~L~sgs~------dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSg 824 (834)
+++....+ ...+-+.|+|+|+.+.|++|++ .+.+++||..+-..+ ++.-....|..+.|+|.-+.|+.|
T Consensus 398 --kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~g 475 (641)
T KOG0772|consen 398 --KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAG 475 (641)
T ss_pred --cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeee
Confidence 44444333 3445688999999999999865 357999999888777 555567889999999999999999
Q ss_pred ecCCcEEEe
Q 003279 825 SHDKCVKIW 833 (834)
Q Consensus 825 s~DG~I~IW 833 (834)
+.||.++||
T Consensus 476 sgdG~~~vy 484 (641)
T KOG0772|consen 476 SGDGTAHVY 484 (641)
T ss_pred cCCCceEEE
Confidence 999999986
No 66
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=8.6e-28 Score=237.85 Aligned_cols=251 Identities=18% Similarity=0.234 Sum_probs=226.9
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
.-+.+|.||.+.|++.+++.+...-|+++.|-+.+|||.-+|..+..+. |...|..++|+.|.++|+||+.++.++|||
T Consensus 50 dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfd 128 (334)
T KOG0278|consen 50 DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFD 128 (334)
T ss_pred CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhh
Confidence 3478899999999999999999999999999999999999999999984 889999999999999999999999999999
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCe
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 702 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~ 702 (834)
++..+.+...+.+|.+.|..+.|......+| ++..|++|++||.++++.+..+..+..++++.++++|. +++.+..+.
T Consensus 129 ln~p~App~E~~ghtg~Ir~v~wc~eD~~iL-SSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~-ilTia~gss 206 (334)
T KOG0278|consen 129 LNRPKAPPKEISGHTGGIRTVLWCHEDKCIL-SSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR-ILTIAYGSS 206 (334)
T ss_pred ccCCCCCchhhcCCCCcceeEEEeccCceEE-eeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCC-EEEEecCce
Confidence 9999888999999999999999998867565 66889999999999999999999999999999999966 556667789
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEE-eecCCCceEEEEEeCCCCEE
Q 003279 703 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE-LSCTGNKFHSCVFHPTFPSL 780 (834)
Q Consensus 703 I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~-~~~~~~~I~svafspdg~~L 780 (834)
|.+||..+...+..++ ....|.+..++|+..++++|+ |..++.||..++. .+.. ..+|.++|.|+.|+|+|...
T Consensus 207 V~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge---Ei~~~nkgh~gpVhcVrFSPdGE~y 282 (334)
T KOG0278|consen 207 VKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE---EIGSYNKGHFGPVHCVRFSPDGELY 282 (334)
T ss_pred eEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCc---eeeecccCCCCceEEEEECCCCcee
Confidence 9999999998888876 567899999999998888888 9999999999994 4444 48899999999999999999
Q ss_pred EEEEcCCeEEEEECCCCeEE
Q 003279 781 LVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 781 ~sgs~dg~I~Iwdl~~~~~~ 800 (834)
++|+.||+|+||.+..++..
T Consensus 283 AsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 283 ASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eccCCCceEEEEEecCCCch
Confidence 99999999999998766543
No 67
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9.3e-27 Score=249.77 Aligned_cols=276 Identities=19% Similarity=0.275 Sum_probs=241.8
Q ss_pred CCCeEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCcee
Q 003279 552 TSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 630 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~-Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i 630 (834)
.+.|.+++|+|...+ +|+++ .-.|.||+..+.....++......|++++|..||++|++|...|.|+|||+.+ +..+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHH
Confidence 356999999996544 44444 36899999998888888888889999999999999999999999999999554 5568
Q ss_pred eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCC-EEEEEEcCCeEEEEEC
Q 003279 631 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG-RILAAAIENYISILDV 708 (834)
Q Consensus 631 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~-~ll~~s~dg~I~iwDl 708 (834)
+.+.+|..+|..+.|+|.++.+|++|++|+.+++||+.+......+. +.+.|.|.+|+|... .+++|+.||.|++||+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 89999999999999999999999999999999999999888654444 456799999999755 6788899999999999
Q ss_pred CCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003279 709 ETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 787 (834)
Q Consensus 709 ~t~-~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg 787 (834)
+.. ..+.++. |..+|.++.+-|.|..|++++...|+|||+.++. ..+.....|...|+|+++..++..|++++-|+
T Consensus 184 R~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~--qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 184 RSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG--QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred ccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc--eehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 987 6666665 9999999999999999999999999999999774 45555566999999999999999999999999
Q ss_pred eEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 788 TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 788 ~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
.|++||+.+.+.+.-....++|.+++.+|++..++.|-.||.+.+
T Consensus 261 ~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 261 HVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence 999999999998877778899999999999999999999998754
No 68
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.3e-26 Score=244.71 Aligned_cols=276 Identities=24% Similarity=0.366 Sum_probs=243.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeee
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~ 632 (834)
..|+++...+....+++|+.|..+.++|..+...+.++++|...|+.+.|+++...+++++.|..|+||...... +...
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-EPTS 298 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-Cccc
Confidence 358888888887899999999999999999999999999999999999999999999999999999999998755 4667
Q ss_pred eccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC---CCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003279 633 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIENYISILDVE 709 (834)
Q Consensus 633 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~---~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~ 709 (834)
...|..+|+.+..+|.|++++ ++++|+++.+.|++++.++...... -.+++..|+|||-.|.+|..|+.|+|||+.
T Consensus 299 ~~~h~~~V~~ls~h~tgeYll-sAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk 377 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGEYLL-SASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK 377 (506)
T ss_pred cccccccceeeeeccCCcEEE-EecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcC
Confidence 778999999999999988555 8899999999999999998887764 348999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcCC
Q 003279 710 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYE 787 (834)
Q Consensus 710 t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-~~~~I~svafspdg~~L~sgs~dg 787 (834)
++..+..|.+|.++|..|+|+.+|.||+++. |+.|++||++... .+.++.. ....+.++.|.+.|.+|++++.+=
T Consensus 378 s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~---n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l 454 (506)
T KOG0289|consen 378 SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK---NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDL 454 (506)
T ss_pred CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc---ccceeeccccccceeEEEcCCCCeEEeeccee
Confidence 9999999999999999999999999999999 7789999999874 3333332 234799999999999999998777
Q ss_pred eEEEEECCCCe--EE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 788 TLELWNMTENK--TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 788 ~I~Iwdl~~~~--~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
.|++++-.+.. .+ .+..|.+..+++.|.....++++++.|..++|+
T Consensus 455 ~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 455 QVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred EEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 77777754443 33 566788899999999999999999999999886
No 69
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2.5e-26 Score=264.29 Aligned_cols=270 Identities=24% Similarity=0.430 Sum_probs=240.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE-eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 628 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~-l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~ 628 (834)
.|...|.|..|. ..++++++.|.+|++||..++..+.. +.+|.+.|.+++|..-+.+|++|+.|.++++||+.++.
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~- 282 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE- 282 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-
Confidence 367778899998 45899999999999999999999988 99999999999998778899999999999999988766
Q ss_pred eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003279 629 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILD 707 (834)
Q Consensus 629 ~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwD 707 (834)
+...+.+|.+.|.++...+ .++++|+.|.+|++|++.++.++..+. +...|.++.++ +.++++|+.|+.|.+||
T Consensus 283 C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~ 357 (537)
T KOG0274|consen 283 CTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWD 357 (537)
T ss_pred EEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEE
Confidence 5899999999999999874 478889999999999999999999999 78889999998 78999999999999999
Q ss_pred CCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003279 708 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 786 (834)
Q Consensus 708 l~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d 786 (834)
+.+++++..+.+|...|+++.+... .++++|+ |++|++||+++.. +++..+..|...+..+.+ .+.+|++++.|
T Consensus 358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD 432 (537)
T KOG0274|consen 358 PRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHTSLVSSLLL--RDNFLVSSSAD 432 (537)
T ss_pred hhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCccccccccc--ccceeEecccc
Confidence 9999999999999999999988765 7888888 9999999999864 688888888888855554 45689999999
Q ss_pred CeEEEEECCCCeEE-Eecc-CCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 787 ETLELWNMTENKTL-TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 787 g~I~Iwdl~~~~~~-~l~~-h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+.|++||..+++++ .+.+ |...|.++++. ...+++++.||.+++||
T Consensus 433 ~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 433 GTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred ccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 99999999999988 4555 56889888876 46788999999999997
No 70
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.8e-27 Score=242.36 Aligned_cols=273 Identities=20% Similarity=0.334 Sum_probs=235.3
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
.++++||.|+-+++|.-..+..- +...+..-..|--|.++|.|++||.|...||+|+.||.|+||.+.+
T Consensus 226 qyLvsgSvDGFiEVWny~~GKlr-----------KDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t 294 (508)
T KOG0275|consen 226 QYLVSGSVDGFIEVWNYTTGKLR-----------KDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET 294 (508)
T ss_pred ceEeeccccceeeeehhccchhh-----------hhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec
Confidence 89999999999999966554322 2222233344556889999999999999999999999999999999
Q ss_pred CeEEEEec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 003279 584 FTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 662 (834)
Q Consensus 584 ~~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 662 (834)
|.+++.+. .|+..|+|+.|+.|+..+++++.|.+|+|.-+.+++. ++.+.+|...|+...|.++|.+++ +++.||+|
T Consensus 295 G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~-LKEfrGHsSyvn~a~ft~dG~~ii-saSsDgtv 372 (508)
T KOG0275|consen 295 GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC-LKEFRGHSSYVNEATFTDDGHHII-SASSDGTV 372 (508)
T ss_pred chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchh-HHHhcCccccccceEEcCCCCeEE-EecCCccE
Confidence 99999986 8999999999999999999999999999999998775 899999999999999999988655 89999999
Q ss_pred EEEECCCCceeeEeec---CCCeeEEEEecC-CCEEEEEEcCCeEEEEECCCCeEEEEEeC---CCCCEEEEEEcCCCCE
Q 003279 663 RYWSINNGSCAGVFKC---QSGATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKLQG---HKNQVHSVCWNTSGEY 735 (834)
Q Consensus 663 ~lwDl~s~~~i~~~~~---~~~i~~l~~sp~-g~~ll~~s~dg~I~iwDl~t~~~~~~l~~---h~~~I~sl~~spdg~~ 735 (834)
++|+..+.+|+.+|+. ...|..+...|. -..++++...++|+|.++. |..++.+.. ..+...+.+.+|.|.+
T Consensus 373 kvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGew 451 (508)
T KOG0275|consen 373 KVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEW 451 (508)
T ss_pred EEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcE
Confidence 9999999999999885 345777777774 4578888889999999986 556666643 3456778889999999
Q ss_pred EEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003279 736 LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 793 (834)
Q Consensus 736 Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwd 793 (834)
+++.+ |+.++.|.+.++ ..-+.+..|...+..++-+|..+.|++-+.||.+++|.
T Consensus 452 iYcigED~vlYCF~~~sG---~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 452 IYCIGEDGVLYCFSVLSG---KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEEccCcEEEEEEeecC---ceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 99988 999999999998 67778888999999999999999999999999999994
No 71
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=2.4e-26 Score=266.99 Aligned_cols=280 Identities=20% Similarity=0.298 Sum_probs=237.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEeCCC------------CeEEEEeccCCCCeEEEEECCCCCEEEEEeCC
Q 003279 550 ASTSKVESCHFSPDGKLLATGG--HDKKAVLWCTES------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 615 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs--~Dg~I~IWd~~t------------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D 615 (834)
.+...|.+|+.+|||..+|||+ .|+.++||+.+. .+.+.....|.+.|+|+.|++||.+||+||+|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 4456699999999999999999 899999997642 23445667899999999999999999999999
Q ss_pred CeEEEEecCC----CC-------------ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec
Q 003279 616 RTVRVWDTEN----PD-------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 678 (834)
Q Consensus 616 g~I~IWDl~s----~~-------------~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~ 678 (834)
+.|.||+... .. .++..+.+|...|.+++|+|++. ++++++.|++|.+||..+.+++.++..
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccccceeeeeeec
Confidence 9999999872 00 14577889999999999999855 888999999999999999998888875
Q ss_pred -CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC------CCEEEEEEcCCCCEEEEEe--CC---eEEE
Q 003279 679 -QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK------NQVHSVCWNTSGEYLASVS--DE---LVRV 746 (834)
Q Consensus 679 -~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~------~~I~sl~~spdg~~Lasgs--Dg---~I~I 746 (834)
.+.|..+.|.|-|++|++-+.|++|+||++.+....+.+.++. ..+..+.|||||.+|++.. .+ ++.|
T Consensus 170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence 5679999999999999999999999999988877777766543 3577899999999999976 33 7888
Q ss_pred EEcCCCCCceeEEEeecCCCceEEEEEeCC------C-------C----EEEEEEcCCeEEEEECCCCeEEEe--ccCCC
Q 003279 747 WSIGSGSKGECIHELSCTGNKFHSCVFHPT------F-------P----SLLVIGCYETLELWNMTENKTLTL--SAHDK 807 (834)
Q Consensus 747 wDl~s~~~~~~i~~~~~~~~~I~svafspd------g-------~----~L~sgs~dg~I~Iwdl~~~~~~~l--~~h~~ 807 (834)
.+-.+. +.-..+.+|..++.++.|+|. . . .+++|+.|++|.||.....+++.. .-...
T Consensus 250 ieR~tW---k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~ 326 (942)
T KOG0973|consen 250 IERGTW---KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNK 326 (942)
T ss_pred EecCCc---eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcC
Confidence 887655 667788899999999999873 1 1 577889999999999988777733 23467
Q ss_pred CeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 808 LVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 808 ~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
.|.+++|+|||..|+.||.||+|.+.
T Consensus 327 SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 327 SIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred ceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 89999999999999999999999875
No 72
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.8e-25 Score=256.70 Aligned_cols=264 Identities=15% Similarity=0.215 Sum_probs=210.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE-------------EEeccCCCCeEEEEECC-CCCEEEEEeCCCeE
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-------------STLEEHTQWITDVRFSP-SLSRLATSSADRTV 618 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~-------------~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I 618 (834)
..|....+++|+..+++++.+..+..|+...+..+ ..+.+|.+.|++++|+| ++.+|++|+.|++|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 34666667777666677777777777765443322 24678999999999999 88999999999999
Q ss_pred EEEecCCCC------ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCC
Q 003279 619 RVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRL 691 (834)
Q Consensus 619 ~IWDl~s~~------~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g 691 (834)
+|||+.+.. .++..+.+|...|.+++|+|++..+|++++.|+.|++||+++++.+..+. +...|.+++|+|++
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG 180 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC
Confidence 999997643 24567889999999999999987789999999999999999998888876 45679999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEeCCCCC-EEEEEEcCCCCEEEEEe-----CCeEEEEEcCCCCCceeEEEeec-C
Q 003279 692 GRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCWNTSGEYLASVS-----DELVRVWSIGSGSKGECIHELSC-T 764 (834)
Q Consensus 692 ~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~-I~sl~~spdg~~Lasgs-----Dg~I~IwDl~s~~~~~~i~~~~~-~ 764 (834)
..|++++.|+.|++||+++++.+..+.+|... +..+.|.+++..+++++ |+.|++||+++... .+..... .
T Consensus 181 ~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~--p~~~~~~d~ 258 (493)
T PTZ00421 181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS--PYSTVDLDQ 258 (493)
T ss_pred CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC--ceeEeccCC
Confidence 99999999999999999999999999888765 45678898877776643 67999999987642 3333322 2
Q ss_pred CCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEe--ccCCCCeEEEEEeCCC
Q 003279 765 GNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTL--SAHDKLVSSLAASTVN 818 (834)
Q Consensus 765 ~~~I~svafspdg~~L~sgs-~dg~I~Iwdl~~~~~~~l--~~h~~~V~~lafspdg 818 (834)
...+..+.|++++..|++++ .|+.|++||+.+++.+.. ..+..++..++|.|.-
T Consensus 259 ~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 259 SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 34566678999999999887 599999999999887733 2455678888888753
No 73
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.6e-26 Score=253.47 Aligned_cols=268 Identities=22% Similarity=0.390 Sum_probs=232.1
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeecc-
Q 003279 557 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG- 635 (834)
Q Consensus 557 sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~- 635 (834)
-+.|+. ...||+|. ...|++|+..+++.......+.+.|+++.|+++|.+|++|..+|.|.|||..+.+. ++.+.+
T Consensus 182 lldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-~~~~~~~ 258 (484)
T KOG0305|consen 182 LLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-TRTLRGS 258 (484)
T ss_pred Hhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-cccccCC
Confidence 367884 44777775 36899999999887766666689999999999999999999999999999997664 666777
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeE-ee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 003279 636 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 713 (834)
Q Consensus 636 h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~-~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~ 713 (834)
|...|.+++|. ..++.+|+.|+.|..+|++..+.... +. |...|+.+.|++++.++++|+.|+.+.|||.....+
T Consensus 259 h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p 335 (484)
T KOG0305|consen 259 HASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP 335 (484)
T ss_pred cCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc
Confidence 99999999998 45788999999999999998765544 43 466799999999999999999999999999988899
Q ss_pred EEEEeCCCCCEEEEEEcC-CCCEEEEEe---CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc--CC
Q 003279 714 RLKLQGHKNQVHSVCWNT-SGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC--YE 787 (834)
Q Consensus 714 ~~~l~~h~~~I~sl~~sp-dg~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~--dg 787 (834)
...+..|...|..++|+| ...+||+|+ |++|++||+.++ ..+..+. ....|.++.|++..+.|+++.. ++
T Consensus 336 ~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g---~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n 411 (484)
T KOG0305|consen 336 KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG---ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSEN 411 (484)
T ss_pred cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC---cEecccc-cCCceeeEEEcCCCCEEEEecCCCCC
Confidence 999999999999999999 456788766 999999999988 5555544 3778999999999988887655 45
Q ss_pred eEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 788 TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 788 ~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.|.||+..+.+.+ .+.+|...|..++++|||..|++|+.|.++++|+
T Consensus 412 ~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 412 QITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred cEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 8999999987766 7889999999999999999999999999999996
No 74
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=6.1e-26 Score=230.62 Aligned_cols=271 Identities=18% Similarity=0.300 Sum_probs=224.5
Q ss_pred cCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCC-CeEE-EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC
Q 003279 549 PASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 625 (834)
Q Consensus 549 ~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~IWd~~t-~~~~-~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s 625 (834)
....+.|.+|+||| ...+|+.|+.|++|++|++.. +..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 45567899999999 555777899999999999986 3333 44567999999999999999999999999999999999
Q ss_pred CCceeeeeccCCCCeEEEEEccCCC-cEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEE
Q 003279 626 PDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 704 (834)
Q Consensus 626 ~~~~i~~~~~h~~~V~sl~fspdg~-~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~ 704 (834)
+. +..+..|.++|.++.|-+... .+|++|+.|++|++||++...++.++..++.+.++..-. ..++++..+..|.
T Consensus 104 ~Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~--pm~vVata~r~i~ 179 (347)
T KOG0647|consen 104 GQ--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY--PMAVVATAERHIA 179 (347)
T ss_pred CC--eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccC--ceeEEEecCCcEE
Confidence 75 677888999999999986533 478899999999999999999999999989888887654 4788889999999
Q ss_pred EEECCCCeEEEE-Ee-CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC---------CceEEEE
Q 003279 705 ILDVETQVCRLK-LQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG---------NKFHSCV 772 (834)
Q Consensus 705 iwDl~t~~~~~~-l~-~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~---------~~I~sva 772 (834)
+|+++++..... .. .-+-.++||+...|....+.|+ +|.+.|..+..+.. ..-..+++|. ..|++++
T Consensus 180 vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 180 VYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred EEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceE
Confidence 999987643322 11 1234578999988888888888 99999999987643 3444555554 2478899
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEE
Q 003279 773 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 824 (834)
Q Consensus 773 fspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSg 824 (834)
|+|....|+++++||++.+||-.....+ ....|..+|+|.+|+.+|.++|-+
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred eecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 9999999999999999999998876655 557899999999999999988755
No 75
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.3e-25 Score=229.38 Aligned_cols=294 Identities=18% Similarity=0.283 Sum_probs=238.6
Q ss_pred EEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 003279 506 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 585 (834)
Q Consensus 506 l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~ 585 (834)
+.+|+....+..|...-..+. .......++.....+.+|.+.|+|++.+ +.++|+|+.|-+|+|||+.+.+
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~-------~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ 74 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKG-------CTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRK 74 (362)
T ss_pred EEEeeeeeEEEEEEeccCccc-------cccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchh
Confidence 456778777777744332211 1123345667788899999999999996 8899999999999999999999
Q ss_pred EEEEeccCCCCeEEEEECCCCC--EEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 003279 586 VKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 663 (834)
Q Consensus 586 ~~~~l~~h~~~I~~l~fspdg~--~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 663 (834)
.+..+-.|.+.|+++.|.++.. .|++|+.||.|.+|+.... ..+.++.+|.+.|+.++.+|.++ +..+.+.|+.++
T Consensus 75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr 152 (362)
T KOG0294|consen 75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLR 152 (362)
T ss_pred hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCCc-eEEEEcCCceee
Confidence 9999999999999999999765 8999999999999999976 46899999999999999999977 666788899999
Q ss_pred EEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCe
Q 003279 664 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL 743 (834)
Q Consensus 664 lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~ 743 (834)
+||+-.|+.....+.....+.+.|+|.|.+|+++.. +.|-+|.+++......+. ....+.|+.|...+.+++.+.|+.
T Consensus 153 ~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~v~~~i~-~~~r~l~~~~l~~~~L~vG~d~~~ 230 (362)
T KOG0294|consen 153 TWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGR-NKIDIYQLDNASVFREIE-NPKRILCATFLDGSELLVGGDNEW 230 (362)
T ss_pred eehhhcCccceeeccCCcceeeEEcCCCCEEEEEec-cEEEEEecccHhHhhhhh-ccccceeeeecCCceEEEecCCce
Confidence 999999998888888778888999999998888776 568889888766555554 335678888875554444444889
Q ss_pred EEEEEcCCCCCceeEEEeecCCCceEEEEE--eCCCCEEEEEEcCCeEEEEECCCC-----eEEEeccCCCCeEEEEEe
Q 003279 744 VRVWSIGSGSKGECIHELSCTGNKFHSCVF--HPTFPSLLVIGCYETLELWNMTEN-----KTLTLSAHDKLVSSLAAS 815 (834)
Q Consensus 744 I~IwDl~s~~~~~~i~~~~~~~~~I~svaf--spdg~~L~sgs~dg~I~Iwdl~~~-----~~~~l~~h~~~V~~lafs 815 (834)
|.+||..+. .+...+..|...|..+.+ .|++.+|+++++||.|+|||++.. +.+........++|+...
T Consensus 231 i~~~D~ds~---~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~~ 306 (362)
T KOG0294|consen 231 ISLKDTDSD---TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRVK 306 (362)
T ss_pred EEEeccCCC---ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeecCCccceeeeh
Confidence 999999886 788999999999999984 467889999999999999999776 333334446677777653
No 76
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.6e-26 Score=261.07 Aligned_cols=245 Identities=19% Similarity=0.329 Sum_probs=203.0
Q ss_pred EEEEec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC--------------------------------CC-----
Q 003279 586 VKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--------------------------------PD----- 627 (834)
Q Consensus 586 ~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s--------------------------------~~----- 627 (834)
....+. .|.+.|+++.|++||+|||+|+.|+.|+||.+.. ..
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 334455 8999999999999999999999999999998764 00
Q ss_pred ----------------------ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEE
Q 003279 628 ----------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQM 685 (834)
Q Consensus 628 ----------------------~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l 685 (834)
.++..+.+|.+.|.+|.|+.++ +|.+++.|.+|++|++....|+.+|.|..-|+|+
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcV 415 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCV 415 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcceeeEEecCCeeEEE
Confidence 2345677899999999999763 6779999999999999999999999999999999
Q ss_pred EEec-CCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec
Q 003279 686 RFQP-RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 763 (834)
Q Consensus 686 ~~sp-~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~ 763 (834)
+|+| |.++|++|+-|+.|+||++...+.+.-..- ..-|+++||.|||++.++|+ +|.+++|+..........+ +..
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~-I~~ 493 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH-IRL 493 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee-Eee
Confidence 9999 778999999999999999998877765553 47899999999999999999 9999999998763211111 111
Q ss_pred C------CCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCeEE-EeccCC--CCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 764 T------GNKFHSCVFHPTFP-SLLVIGCYETLELWNMTENKTL-TLSAHD--KLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 764 ~------~~~I~svafspdg~-~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~--~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
+ ...|+.+.|.|... .|++.+.|..|+|||..+..++ .+.++. ..-....|+.||++|+++++|..|+||
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 1 23799999997654 5999999999999999887776 555433 234566788999999999999999999
Q ss_pred C
Q 003279 834 K 834 (834)
Q Consensus 834 d 834 (834)
+
T Consensus 574 ~ 574 (712)
T KOG0283|consen 574 K 574 (712)
T ss_pred e
Confidence 6
No 77
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.5e-26 Score=231.76 Aligned_cols=289 Identities=19% Similarity=0.311 Sum_probs=246.6
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 003279 541 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 620 (834)
Q Consensus 541 ~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~I 620 (834)
.+..++.+.||.+.|+.++.......+.+++.|.+.+||.+++++++..+.+|.+.|++|+|++.+.++++++.|++.+|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 45667888999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred EecC------C---------------------------------CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCc
Q 003279 621 WDTE------N---------------------------------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 661 (834)
Q Consensus 621 WDl~------s---------------------------------~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 661 (834)
|... . -..++..+.+|...|.+..|...+. -+++++.|.+
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~-Q~vTaSWDRT 295 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ-QMVTASWDRT 295 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc-eeeeeecccc
Confidence 9621 0 0124567888999999999988776 4559999999
Q ss_pred EEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 003279 662 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASV 739 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~-~~~~~l~~h~~~I~sl~~spdg~~Lasg 739 (834)
..+||+++++.+..+.. ....+.++-+|..+.+++.+.|.+.++||.+.. ..+..|.+|...|+++.|..+.+ ++++
T Consensus 296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSg 374 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSG 374 (481)
T ss_pred ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeec
Confidence 99999999999998875 556888899999999999999999999999864 56788999999999999987766 4555
Q ss_pred e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE-----eccCCCCeEEEE
Q 003279 740 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-----LSAHDKLVSSLA 813 (834)
Q Consensus 740 s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~-----l~~h~~~V~~la 813 (834)
+ |.+|+|||+++-. ..+.++. ...+++.++++..++.|+.--.+..|++||+...++-. -.+|...|+|++
T Consensus 375 SDDrTvKvWdLrNMR--splATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~A 451 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMR--SPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCA 451 (481)
T ss_pred CCCceEEEeeecccc--Ccceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeee
Confidence 5 8899999999864 3455544 36788999999999888888888899999999887663 348999999999
Q ss_pred EeCCCC--EEEEEecCCcEEEeC
Q 003279 814 ASTVNG--MVASASHDKCVKIWK 834 (834)
Q Consensus 814 fspdg~--~LaSgs~DG~I~IWd 834 (834)
|..+.. -|++|+.|..+.=|+
T Consensus 452 W~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 452 WLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred ccccCcccccccccccceeeeeE
Confidence 986543 578999999988885
No 78
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=2e-25 Score=256.87 Aligned_cols=265 Identities=23% Similarity=0.419 Sum_probs=232.1
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEE-ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL-IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 581 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~-l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~ 581 (834)
++++.+|+.|.++.+|..... ..+.. +.||.+.|++++|..-+.+|++|+.|.+++|||+
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~-------------------~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~ 278 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNG-------------------YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDC 278 (537)
T ss_pred cCeEEecCCCceeEEeecccc-------------------eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEec
Confidence 678899999999988844322 33455 9999999999999987889999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCc
Q 003279 582 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 661 (834)
Q Consensus 582 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 661 (834)
.++.+..++.+|.+.|.++...+ .++++|+.|.+|++|++.++. .+..+.+|.+.|.++.++ ..++++|+.|++
T Consensus 279 ~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~-~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~ 352 (537)
T KOG0274|consen 279 STGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGA-CLNLLRGHTGPVNCVQLD---EPLLVSGSYDGT 352 (537)
T ss_pred CCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcc-eEEEeccccccEEEEEec---CCEEEEEecCce
Confidence 99999999999999999998854 478889999999999999766 488888899999999998 447889999999
Q ss_pred EEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 003279 662 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASV 739 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~-~~~~~l~~h~~~I~sl~~spdg~~Lasg 739 (834)
|++||+.+++++..+.. ...|.++.+... ..++.|+.|+.|++||+++. +++..+.+|..-+.++.+ .+++|+++
T Consensus 353 v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~ 429 (537)
T KOG0274|consen 353 VKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSS 429 (537)
T ss_pred EEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEec
Confidence 99999999999999986 456888877765 89999999999999999999 999999999998876655 57788888
Q ss_pred e-CCeEEEEEcCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 740 S-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 740 s-Dg~I~IwDl~s~~~~~~i~~~~~-~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
+ |++|++||..++ .++..+.+ +...|..+++. ...+++++.++.+++||+++++..
T Consensus 430 ~aD~~Ik~WD~~~~---~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 430 SADGTIKLWDAEEG---ECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred cccccEEEeecccC---ceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchh
Confidence 8 999999999988 78888877 56778877776 467999999999999999999877
No 79
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.9e-25 Score=251.87 Aligned_cols=269 Identities=20% Similarity=0.369 Sum_probs=228.3
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 581 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~ 581 (834)
...++.++-..+.|.+|+-.=. ..+..|..|.++|..++|+|.+.++++|+.|.+|+||+.
T Consensus 20 ~rPwILtslHsG~IQlWDYRM~-------------------tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 20 KRPWILTSLHSGVIQLWDYRMG-------------------TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred CCCEEEEeecCceeeeehhhhh-------------------hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec
Confidence 3478888888999999944321 234567899999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCc
Q 003279 582 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 661 (834)
Q Consensus 582 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 661 (834)
++.+++.++.+|-+.|..+.|++.-.+|+++|.|.+|+||+..+.+ ++..+.+|...|.|..|+|..+ ++++++-|-+
T Consensus 81 k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~-~iavltGHnHYVMcAqFhptED-lIVSaSLDQT 158 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK-CIAVLTGHNHYVMCAQFHPTED-LIVSASLDQT 158 (1202)
T ss_pred ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-eEEEEecCceEEEeeccCCccc-eEEEecccce
Confidence 9999999999999999999999999999999999999999999865 5999999999999999999854 8889999999
Q ss_pred EEEEECCCCc---------------------------ee--eEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003279 662 IRYWSINNGS---------------------------CA--GVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQ 711 (834)
Q Consensus 662 I~lwDl~s~~---------------------------~i--~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~ 711 (834)
|+|||+..-+ .+ ..+. |..+|+-++|+|.-..|++|+.|..|++|.+...
T Consensus 159 VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet 238 (1202)
T KOG0292|consen 159 VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 238 (1202)
T ss_pred EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc
Confidence 9999985311 01 1111 3456899999999999999999999999998764
Q ss_pred e--EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 003279 712 V--CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET 788 (834)
Q Consensus 712 ~--~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~ 788 (834)
+ .+.+..+|.+.|.|+-|+|.-.++++.+ |++|+|||+... ..+..+......++.++.+|..+.+++|- |+-
T Consensus 239 KaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR---t~v~tfrrendRFW~laahP~lNLfAAgH-DsG 314 (1202)
T KOG0292|consen 239 KAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR---TSVQTFRRENDRFWILAAHPELNLFAAGH-DSG 314 (1202)
T ss_pred cceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc---cceeeeeccCCeEEEEEecCCcceeeeec-CCc
Confidence 3 4556788999999999999999999988 999999999887 78888888889999999999998655554 443
Q ss_pred EEEEECC
Q 003279 789 LELWNMT 795 (834)
Q Consensus 789 I~Iwdl~ 795 (834)
+.+|.++
T Consensus 315 m~VFkle 321 (1202)
T KOG0292|consen 315 MIVFKLE 321 (1202)
T ss_pred eEEEEEc
Confidence 4444443
No 80
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.9e-26 Score=253.70 Aligned_cols=275 Identities=23% Similarity=0.420 Sum_probs=234.8
Q ss_pred EEEEc-CCCCEEEEEeCCCcEEEEeCCCCe------EEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC-c
Q 003279 557 SCHFS-PDGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-Y 628 (834)
Q Consensus 557 sl~fS-pdg~~Lasgs~Dg~I~IWd~~t~~------~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~-~ 628 (834)
.+..+ |.+++|++||+||.|++|++.... ....++.|.++|++++...+++.|+++|.|-+|++|+..... .
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 34444 367789999999999999876422 356788999999999999999999999999999999998764 6
Q ss_pred eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce--eeEee----------cCCCeeEEEEecCCCEEEE
Q 003279 629 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--AGVFK----------CQSGATQMRFQPRLGRILA 696 (834)
Q Consensus 629 ~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~--i~~~~----------~~~~i~~l~~sp~g~~ll~ 696 (834)
+..++..|.+.|.|+++-.....++|+|+-|+.|.+||++++.. +..+. +...+++++..+.+..|+.
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 78889999999999999444466999999999999999998732 22221 2456899999999999999
Q ss_pred EEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003279 697 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 775 (834)
Q Consensus 697 ~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafsp 775 (834)
|+.++.|++||.++++.+..+.+|+..|.++..++||..+++++ ||+|++||+.-. +|+.++..|...|+++..+|
T Consensus 189 Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---rCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---RCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred cCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc---ceeeeEEeccCceEEEeeCC
Confidence 99999999999999999999999999999999999999999988 999999999887 89999999999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCC-eEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 776 TFPSLLVIGCYETLELWNMTEN-KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 776 dg~~L~sgs~dg~I~Iwdl~~~-~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+-.++++|+.|+.|+.-|+.+. +...+...+.+|..+..+.+..-+-+++.|+.|+-|.
T Consensus 266 sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 266 SFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred CcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence 9999999999999999999884 3334555667788887775555556777888888884
No 81
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.4e-25 Score=240.87 Aligned_cols=241 Identities=19% Similarity=0.263 Sum_probs=211.7
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCC
Q 003279 548 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENP 626 (834)
Q Consensus 548 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~s~ 626 (834)
+..-.+.|++++|-.||++||+|+..|.|+|||+.+...++.+.+|..+|..+.|+|. +..|++|+.|+.+++||+.+.
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a 143 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA 143 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence 3344567999999999999999999999999997776677889999999999999994 667889999999999999986
Q ss_pred CceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC-ceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003279 627 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 705 (834)
Q Consensus 627 ~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~-~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~i 705 (834)
.. ...+.+|++.|.|.+|+|-.++++++|+.||.|++||++.. ..+..+.++.+|..+.+-|.|..|++++ .+.|+|
T Consensus 144 ~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkV 221 (487)
T KOG0310|consen 144 YV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKV 221 (487)
T ss_pred EE-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEE
Confidence 64 67889999999999999999999999999999999999987 7888999999999999999988776655 578999
Q ss_pred EECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003279 706 LDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 783 (834)
Q Consensus 706 wDl~t~-~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sg 783 (834)
||+-+| +.+.....|...|+|+++..++..|++++ |+.|+|||+.+- +.++.+.- .++|.+++.+|++..+++|
T Consensus 222 WDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~---Kvv~s~~~-~~pvLsiavs~dd~t~viG 297 (487)
T KOG0310|consen 222 WDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY---KVVHSWKY-PGPVLSIAVSPDDQTVVIG 297 (487)
T ss_pred EEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce---EEEEeeec-ccceeeEEecCCCceEEEe
Confidence 999965 55555666999999999999999999999 999999997765 66666653 6789999999999999999
Q ss_pred EcCCeEEEEEC
Q 003279 784 GCYETLELWNM 794 (834)
Q Consensus 784 s~dg~I~Iwdl 794 (834)
..+|.+.+-+.
T Consensus 298 msnGlv~~rr~ 308 (487)
T KOG0310|consen 298 MSNGLVSIRRR 308 (487)
T ss_pred cccceeeeehh
Confidence 99997776644
No 82
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.5e-24 Score=206.87 Aligned_cols=290 Identities=19% Similarity=0.257 Sum_probs=239.4
Q ss_pred eeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC------CC---------eEEEEeccCCCCeEEEEECC
Q 003279 540 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE------SF---------TVKSTLEEHTQWITDVRFSP 604 (834)
Q Consensus 540 ~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~------t~---------~~~~~l~~h~~~I~~l~fsp 604 (834)
..|..+.++. .+..|.+++|+|.|.+.|+|+..++++|.-.. .+ -..+.-+.|.+.|+|.+|+|
T Consensus 21 ~~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 21 KHFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP 99 (350)
T ss_pred cceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC
Confidence 3445555554 45679999999999999999999999987432 11 01123357999999999999
Q ss_pred CCCEEEEEeCCCeEEEEecCCCCc----eeeeeccCCCCeEEEEEccC---CCcEEEEEe-CCCcEEEEECCCCceeeEe
Q 003279 605 SLSRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPS---KEDLLCSCD-NNSEIRYWSINNGSCAGVF 676 (834)
Q Consensus 605 dg~~Latgs~Dg~I~IWDl~s~~~----~i~~~~~h~~~V~sl~fspd---g~~llasgs-~Dg~I~lwDl~s~~~i~~~ 676 (834)
+|.+|++|+.|++|++..++.... .-..+..|.+.|..++|..+ +..+|++++ .|..|++-|...|.....+
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~ 179 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL 179 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence 999999999999999987764332 12456779999999999643 445666654 5788999999999988888
Q ss_pred ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC--C-----CCCEEEEEEcCCCCEEEEEe-CCeEEEEE
Q 003279 677 KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG--H-----KNQVHSVCWNTSGEYLASVS-DELVRVWS 748 (834)
Q Consensus 677 ~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~--h-----~~~I~sl~~spdg~~Lasgs-Dg~I~IwD 748 (834)
..+.+-.-..++-++-.|++|+.|.+|++||++-..++.++.. | ...|.+++..|.|++|++|. |....+||
T Consensus 180 sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 180 SGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD 259 (350)
T ss_pred cCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence 8766544455666788999999999999999999988887653 2 35789999999999999999 99999999
Q ss_pred cCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-----eEEEeccCCCCeEEEEEeCCCCEEEE
Q 003279 749 IGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN-----KTLTLSAHDKLVSSLAASTVNGMVAS 823 (834)
Q Consensus 749 l~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~-----~~~~l~~h~~~V~~lafspdg~~LaS 823 (834)
++.+ ..+..+..|...|.++.|+|...++++++.|..|++-|+... ..+.+..|+..+..+.|+|..-.+++
T Consensus 260 irg~---r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfis 336 (350)
T KOG0641|consen 260 IRGG---RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFIS 336 (350)
T ss_pred eeCC---ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeee
Confidence 9998 889999999999999999999999999999999999998653 23366689999999999999999999
Q ss_pred EecCCcEEEe
Q 003279 824 ASHDKCVKIW 833 (834)
Q Consensus 824 gs~DG~I~IW 833 (834)
.+.|.++.+|
T Consensus 337 ssadkt~tlw 346 (350)
T KOG0641|consen 337 SSADKTATLW 346 (350)
T ss_pred ccCcceEEEe
Confidence 9999999999
No 83
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=3e-26 Score=240.99 Aligned_cols=264 Identities=21% Similarity=0.357 Sum_probs=226.6
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
..+++|+.|..|+.|..... ....+.+|.|..+.|+++.|.++++++++++.|+.+++|++..
T Consensus 188 dtlatgg~Dr~Ik~W~v~~~-----------------k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~ 250 (459)
T KOG0288|consen 188 DTLATGGSDRIIKLWNVLGE-----------------KSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS 250 (459)
T ss_pred chhhhcchhhhhhhhhcccc-----------------hhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc
Confidence 56789999999999944322 2345677888999999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 663 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 663 (834)
.+...++.+|.+.|+++.|......+++|+.|.+|++||+.... +.+++. ....+.+|+.. ...+++|-.|+.|+
T Consensus 251 ~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~-C~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 251 LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY-CSKTVL-PGSQCNDIVCS---ISDVISGHFDKKVR 325 (459)
T ss_pred hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhh-eecccc-ccccccceEec---ceeeeecccccceE
Confidence 99999999999999999999877779999999999999999744 344433 23456666665 34677999999999
Q ss_pred EEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC----CCCEEEEEEcCCCCEEEEE
Q 003279 664 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH----KNQVHSVCWNTSGEYLASV 739 (834)
Q Consensus 664 lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h----~~~I~sl~~spdg~~Lasg 739 (834)
+||+++..+......++.|+++..++++..+++++.|..+.++|+++......+... ....+.+.|||++.|+++|
T Consensus 326 fwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAG 405 (459)
T KOG0288|consen 326 FWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAG 405 (459)
T ss_pred EEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeec
Confidence 999999999999999999999999999999999999999999999999887777542 2347889999999999999
Q ss_pred e-CCeEEEEEcCCCCCceeEEEeecCCC--ceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003279 740 S-DELVRVWSIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLLVIGCYETLELW 792 (834)
Q Consensus 740 s-Dg~I~IwDl~s~~~~~~i~~~~~~~~--~I~svafspdg~~L~sgs~dg~I~Iw 792 (834)
+ ||.|+||++.++ ++...+..... .|++++|+|.|..+++++.++.+.+|
T Consensus 406 S~dgsv~iW~v~tg---KlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 406 SADGSVYIWSVFTG---KLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred cCCCcEEEEEccCc---eEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 9 999999999998 55555544433 59999999999999999999999998
No 84
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=2.5e-25 Score=222.05 Aligned_cols=241 Identities=24% Similarity=0.362 Sum_probs=215.6
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCce-eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 003279 588 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 666 (834)
Q Consensus 588 ~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~-i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwD 666 (834)
+.+.+|...|.+|+|+.+|..|++|+.|+++.+|+++..+.. -....+|.+.|-.++|+|....+|++++.|..|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 455689999999999999999999999999999999875432 2356789999999999999999999999999999999
Q ss_pred CCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEE
Q 003279 667 INNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVR 745 (834)
Q Consensus 667 l~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~ 745 (834)
++.++++..+....+-..+.|+|+|.+++++..|..|.++|.++.+.+...+ ....+..++|+.++.+++... .|+|.
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEE
Confidence 9999999999988888899999999999999999999999999988776665 556788889987777666665 79999
Q ss_pred EEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEE
Q 003279 746 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 824 (834)
Q Consensus 746 IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSg 824 (834)
|...... +++..+..|.....|+.|+|+|+++++|+.|-.+.+||+.+--++ .+..++-+|..|.|+.||++||+|
T Consensus 173 ILsypsL---kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 173 ILSYPSL---KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred EEecccc---ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence 9998866 788899999999999999999999999999999999999987766 667899999999999999999999
Q ss_pred ecCCcEEE
Q 003279 825 SHDKCVKI 832 (834)
Q Consensus 825 s~DG~I~I 832 (834)
+.|..|-|
T Consensus 250 SEDh~IDI 257 (313)
T KOG1407|consen 250 SEDHFIDI 257 (313)
T ss_pred CccceEEe
Confidence 99998854
No 85
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=8.4e-24 Score=243.01 Aligned_cols=245 Identities=18% Similarity=0.269 Sum_probs=191.0
Q ss_pred EEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCC-------eEEEEeccCCCCeEEEEECCCC-CEEEEEeCCC
Q 003279 546 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADR 616 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~IWd~~t~-------~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg 616 (834)
..+.+|.+.|++++|+| ++.+||+|+.|++|+|||+.++ +.+..+.+|...|.+++|+|++ .+|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 45789999999999999 8899999999999999999764 3567889999999999999975 6999999999
Q ss_pred eEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCC--eeEEEEecCCCEE
Q 003279 617 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRI 694 (834)
Q Consensus 617 ~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~--i~~l~~sp~g~~l 694 (834)
+|+|||+.++. .+..+.+|...|.+++|+|++. +|++++.|+.|++||+++++.+..+..+.. +..+.|.+++..+
T Consensus 149 tVrIWDl~tg~-~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 149 VVNVWDVERGK-AVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred EEEEEECCCCe-EEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence 99999999865 4677888999999999999976 777999999999999999998887765433 4567889988888
Q ss_pred EEEEc----CCeEEEEECCCCe-EEEEEeC-CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeec-CC
Q 003279 695 LAAAI----ENYISILDVETQV-CRLKLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC-TG 765 (834)
Q Consensus 695 l~~s~----dg~I~iwDl~t~~-~~~~l~~-h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~-~~ 765 (834)
++++. |+.|++||+++.. ++..... +...+....|++++.+|++++ |+.|++||+.++. .+..... +.
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~---~~~~~~~~s~ 303 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER---LTFCSSYSSV 303 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc---eEEEeeccCC
Confidence 87653 6899999998754 3333332 334566678999999888765 8999999999873 3333322 34
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003279 766 NKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 797 (834)
Q Consensus 766 ~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~ 797 (834)
.++..++|.|.-. +-...-...++|.+...
T Consensus 304 ~~~~g~~~~pk~~--~dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 304 EPHKGLCMMPKWS--LDTRKCEIARFYALTYH 333 (493)
T ss_pred CCCcceEeccccc--ccccceeeeEEEEecCC
Confidence 5677888888532 11222224455655444
No 86
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=5.4e-25 Score=255.82 Aligned_cols=284 Identities=21% Similarity=0.311 Sum_probs=230.4
Q ss_pred ceEEecc--CCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 003279 504 RFVDDGS--LDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 581 (834)
Q Consensus 504 ~~l~~Gs--~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~ 581 (834)
..+++|+ .|+.+++|...--. .+. ....-..-..+.+...|.+.|+|+.|++||++||+|++|+.|.||..
T Consensus 26 ~~~aTgGq~~d~~~~iW~~~~vl--~~~-----~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~ 98 (942)
T KOG0973|consen 26 VKFATGGQVLDGGIVIWSQDPVL--DEK-----EEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWER 98 (942)
T ss_pred eeEecCCccccccceeecccccc--chh-----hhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeee
Confidence 4568888 88888888332110 000 00011122456778899999999999999999999999999999976
Q ss_pred C------------------CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEE
Q 003279 582 E------------------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 643 (834)
Q Consensus 582 ~------------------t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl 643 (834)
. ..+.+..+.+|...|.+++|+|++.+|++++.|++|.|||..+. ..+..+.+|.+.|..+
T Consensus 99 ~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGv 177 (942)
T KOG0973|consen 99 AEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGV 177 (942)
T ss_pred cccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-eeeeeeecccccccce
Confidence 5 23567888999999999999999999999999999999999998 5689999999999999
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-------CCCeeEEEEecCCCEEEEEEc----CCeEEEEECCCCe
Q 003279 644 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRLGRILAAAI----ENYISILDVETQV 712 (834)
Q Consensus 644 ~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-------~~~i~~l~~sp~g~~ll~~s~----dg~I~iwDl~t~~ 712 (834)
.|.|-|+ +||+-+.|++|+||++.+..+.+.+.. ...+..+.|+|||.+|++... ...+.|++-.+.+
T Consensus 178 s~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk 256 (942)
T KOG0973|consen 178 SWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWK 256 (942)
T ss_pred EECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCce
Confidence 9999987 777999999999999887766666653 234788999999999998765 2479999999999
Q ss_pred EEEEEeCCCCCEEEEEEcCC-----CC------------EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEe
Q 003279 713 CRLKLQGHKNQVHSVCWNTS-----GE------------YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 774 (834)
Q Consensus 713 ~~~~l~~h~~~I~sl~~spd-----g~------------~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafs 774 (834)
.-..|-+|..++.++.|+|. .. .+|+|+ |++|.||......+...++ ......|..++|+
T Consensus 257 ~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~--~lf~~SI~DmsWs 334 (942)
T KOG0973|consen 257 VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH--NLFNKSIVDMSWS 334 (942)
T ss_pred eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh--hhhcCceeeeeEc
Confidence 99999999999999999981 11 566677 9999999987664333333 3346789999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCe
Q 003279 775 PTFPSLLVIGCYETLELWNMTENK 798 (834)
Q Consensus 775 pdg~~L~sgs~dg~I~Iwdl~~~~ 798 (834)
|||-.|++++.||+|.++.++..+
T Consensus 335 pdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 335 PDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCCCeEEEEecCCeEEEEEcchHH
Confidence 999999999999999999987643
No 87
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.5e-25 Score=221.27 Aligned_cols=249 Identities=20% Similarity=0.315 Sum_probs=208.2
Q ss_pred eeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCC-CCeEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCeE
Q 003279 542 FTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTV 618 (834)
Q Consensus 542 ~~~~~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~IWd~~-t~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I 618 (834)
+.+...+.. .+.+..++|+++. ..+++++.||+++|||+. ..+++..+++|...|.++.|++ ++..++++|.|++|
T Consensus 51 i~e~~s~d~-~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~Ti 129 (311)
T KOG0277|consen 51 IQECQSYDT-EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTI 129 (311)
T ss_pred eEEEEeeec-ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCce
Confidence 344555543 3459999999954 478889999999999964 3467888999999999999998 46678899999999
Q ss_pred EEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-CceeeEeecCCCeeEEEEec-CCCEEEE
Q 003279 619 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQP-RLGRILA 696 (834)
Q Consensus 619 ~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s-~~~i~~~~~~~~i~~l~~sp-~g~~ll~ 696 (834)
++|+...+. .+.++.+|..-|....|+|....++++++.|+++++||++. |+.+....+...+.|+.|+. +...+++
T Consensus 130 KLW~~~r~~-Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~T 208 (311)
T KOG0277|consen 130 KLWDPNRPN-SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLAT 208 (311)
T ss_pred EeecCCCCc-ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEe
Confidence 999998765 58999999999999999999999999999999999999986 45444333455899999987 4566778
Q ss_pred EEcCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003279 697 AAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 773 (834)
Q Consensus 697 ~s~dg~I~iwDl~t~-~~~~~l~~h~~~I~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svaf 773 (834)
++.|+.|++||+++- .++.++.+|.-.|..+.|||.. .+|++++ |-+++|||..... .++.+...|..-+..+.|
T Consensus 209 g~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--s~~e~~~~HtEFv~g~Dw 286 (311)
T KOG0277|consen 209 GGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--SAIETVDHHTEFVCGLDW 286 (311)
T ss_pred cCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--hhhhhhhccceEEecccc
Confidence 888999999999975 6788899999999999999964 5788888 9999999998653 456667778888888999
Q ss_pred eCC-CCEEEEEEcCCeEEEEEC
Q 003279 774 HPT-FPSLLVIGCYETLELWNM 794 (834)
Q Consensus 774 spd-g~~L~sgs~dg~I~Iwdl 794 (834)
++- ...++.++.|+.++||+.
T Consensus 287 s~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 287 SLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccCceeeecccccceeeecc
Confidence 884 567899999999999984
No 88
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=1.8e-23 Score=225.37 Aligned_cols=264 Identities=13% Similarity=0.111 Sum_probs=208.3
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEecCCCCceeeeeccCCCCeEE
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 642 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~s 642 (834)
++++++++.|+.|++||+.+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||+.++.. ...+..+. .+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~-~~~~ 77 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-IGTLPSGP-DPEL 77 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcE-EEeccCCC-CccE
Confidence 35788999999999999999998888876544 6789999999876 5667889999999987654 44444333 3577
Q ss_pred EEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCC-eEEEEECCCCeEEEEEeCCC
Q 003279 643 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHK 721 (834)
Q Consensus 643 l~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg-~I~iwDl~t~~~~~~l~~h~ 721 (834)
++|+|+++.++++++.++.|++||+.+.+.+..+.....+.+++|+|++..++++..++ .+.+||.++++....+. ..
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~ 156 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VD 156 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cC
Confidence 89999998777777788999999999988888877666678999999999999888765 57788999887766554 23
Q ss_pred CCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecC-------CCceEEEEEeCCCCEEEEE-EcCCeEEE
Q 003279 722 NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCT-------GNKFHSCVFHPTFPSLLVI-GCYETLEL 791 (834)
Q Consensus 722 ~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~-------~~~I~svafspdg~~L~sg-s~dg~I~I 791 (834)
..+.+++|++++.+|++++ ++.|++||+.++ +.+..+..+ ......++|+|++++++++ +.++.|.+
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATR---KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc---eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 4567899999999886554 889999999987 343333221 1123568899999986664 45668999
Q ss_pred EECCCCeEEEeccCCCCeEEEEEeCCCCEEEEE-ecCCcEEEeC
Q 003279 792 WNMTENKTLTLSAHDKLVSSLAASTVNGMVASA-SHDKCVKIWK 834 (834)
Q Consensus 792 wdl~~~~~~~l~~h~~~V~~lafspdg~~LaSg-s~DG~I~IWd 834 (834)
||+.+++.+....+...+.+++|+|++++|+++ +.+|.|+|||
T Consensus 234 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 234 VDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred EECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 999998887554566789999999999999876 4689999997
No 89
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=2.3e-24 Score=220.23 Aligned_cols=269 Identities=19% Similarity=0.265 Sum_probs=222.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCcee
Q 003279 551 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 630 (834)
Q Consensus 551 H~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i 630 (834)
..+.|+++.|+|.+..|++++.||.+++||+........+ .|..++.+++|.+ ...+++|+-||.|+++|+.++. .
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~--~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN--E 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCc--c
Confidence 4567999999999999999999999999999987665555 5899999999986 4679999999999999999866 4
Q ss_pred eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003279 631 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 710 (834)
Q Consensus 631 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t 710 (834)
..+..|...|.||.+++... .+++|+.|++|++||.+.......+.....|.++... ++.|++|+.+..|.+||+++
T Consensus 88 ~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence 66778999999999997654 6779999999999999987777777777778777765 67899999999999999998
Q ss_pred CeEEEEEe--CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC-CceeEEEeecCC---------CceEEEEEeCCC
Q 003279 711 QVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS-KGECIHELSCTG---------NKFHSCVFHPTF 777 (834)
Q Consensus 711 ~~~~~~l~--~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~-~~~~i~~~~~~~---------~~I~svafspdg 777 (834)
........ .-+..+.||++.|++.-+++++ ||.|.+=.++... .......|++|. .+|++++|+|-.
T Consensus 165 ~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~ 244 (323)
T KOG1036|consen 165 LDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH 244 (323)
T ss_pred ccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc
Confidence 75544322 2445789999999888788888 9988887776541 112333455553 468999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEec
Q 003279 778 PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASH 826 (834)
Q Consensus 778 ~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~ 826 (834)
..|++|+.||.|.+||+.+.+.+ .+...+..|..++|+.||..||+++.
T Consensus 245 ~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 245 GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99999999999999999988877 55566778999999999999999874
No 90
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=5.8e-25 Score=223.44 Aligned_cols=287 Identities=13% Similarity=0.224 Sum_probs=230.6
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
.++++|+.|..|++++...--. +.....+...........+++|-.|.++|+++.|+|....|++|+.|++|++||+..
T Consensus 125 ~lvATGsaD~SIKildvermla-ks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK 203 (430)
T KOG0640|consen 125 SLVATGSADASIKILDVERMLA-KSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSK 203 (430)
T ss_pred cEEEccCCcceEEEeehhhhhh-hcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEeccc
Confidence 7999999999999996542211 111111222222223356889999999999999999999999999999999999886
Q ss_pred CeEEEEec--cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceee--eeccCCCCeEEEEEccCCCcEEEEEeCC
Q 003279 584 FTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR--TFTGHSTTVMSLDFHPSKEDLLCSCDNN 659 (834)
Q Consensus 584 ~~~~~~l~--~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~--~~~~h~~~V~sl~fspdg~~llasgs~D 659 (834)
-...+.++ ....+|.+|.|+|.|.+|+.|..-.++++||+++-.+-+. .-..|.+.|+++.+++.+. +.++++.|
T Consensus 204 ~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkD 282 (430)
T KOG0640|consen 204 TSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGS-LYVTASKD 282 (430)
T ss_pred HHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCcc-EEEEeccC
Confidence 44433322 3456899999999999999999999999999998654222 2346899999999999977 67799999
Q ss_pred CcEEEEECCCCceeeEeec---CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC--C---CEEEEEEcC
Q 003279 660 SEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK--N---QVHSVCWNT 731 (834)
Q Consensus 660 g~I~lwDl~s~~~i~~~~~---~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~--~---~I~sl~~sp 731 (834)
|.|++||--+++|+.++.. ...|++..|..+++++++.+.|..+++|.+.+++++..+.+.. + .-+...|+.
T Consensus 283 G~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNh 362 (430)
T KOG0640|consen 283 GAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNH 362 (430)
T ss_pred CcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcC
Confidence 9999999999999998874 4569999999999999999999999999999999999987642 1 224556788
Q ss_pred CCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 732 SGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 732 dg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
...|++.-. .+.+.-||.++... ....-.+|.+.+..+.-+|.++-+++++.|-.+++|--
T Consensus 363 tEdyVl~pDEas~slcsWdaRtadr--~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 363 TEDYVLFPDEASNSLCSWDARTADR--VALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred ccceEEccccccCceeeccccchhh--hhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 888888776 56899999998743 22233578999999999999999999999999999964
No 91
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.2e-24 Score=218.09 Aligned_cols=285 Identities=19% Similarity=0.264 Sum_probs=214.3
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE--EEe--ccCCCCeEEEEECCCCCEEE-EEeCCCeEE
Q 003279 545 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STL--EEHTQWITDVRFSPSLSRLA-TSSADRTVR 619 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~--~~l--~~h~~~I~~l~fspdg~~La-tgs~Dg~I~ 619 (834)
+..|++|.+.|+|++|+.||++||+++.|++|+||++++.... +.+ ...-+--+.++|.||-+-++ .+-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4678899999999999999999999999999999998864322 111 11223467899999976554 444566899
Q ss_pred EEecCCCC---cee--------eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEE
Q 003279 620 VWDTENPD---YSL--------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRF 687 (834)
Q Consensus 620 IWDl~s~~---~~i--------~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~ 687 (834)
+|.+...+ ... .....|.-.|..+-...+ ..++++++.|..|.+|+++ |+.+..+.. ...-+..+.
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 99876322 111 122335556666666544 4578899999999999999 888877765 345677899
Q ss_pred ecCCCEEEEEEcCCeEEEEECC---CC-----eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC----CC
Q 003279 688 QPRLGRILAAAIENYISILDVE---TQ-----VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG----SK 754 (834)
Q Consensus 688 sp~g~~ll~~s~dg~I~iwDl~---t~-----~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~----~~ 754 (834)
+|+|+++++++..-.|++|.+- .| ..+..+++|...|+.++|+++...+++.+ ||+++|||+.-. ..
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999999999999863 22 34677899999999999999999999999 999999998632 12
Q ss_pred ceeEEEe----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE--EeccCCCCeEEEEEeCCCCEEEEEecCC
Q 003279 755 GECIHEL----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDK 828 (834)
Q Consensus 755 ~~~i~~~----~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~--~l~~h~~~V~~lafspdg~~LaSgs~DG 828 (834)
.+.+.+. .........+.++|.|..|+++. ...|++|..++++.. ....|...|.+|+|+++|++++||++ .
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd-r 394 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD-R 394 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc-e
Confidence 2222222 22334445899999999666554 457999999998877 33479999999999999999999864 5
Q ss_pred cEEEe
Q 003279 829 CVKIW 833 (834)
Q Consensus 829 ~I~IW 833 (834)
.+++.
T Consensus 395 ~vrv~ 399 (420)
T KOG2096|consen 395 YVRVI 399 (420)
T ss_pred eeeee
Confidence 56553
No 92
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=3.3e-23 Score=233.81 Aligned_cols=309 Identities=16% Similarity=0.278 Sum_probs=249.8
Q ss_pred eEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 003279 505 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 584 (834)
Q Consensus 505 ~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~ 584 (834)
-+..|+.++.+.+|..... +.+.++.++...|+++.=+|-=..+|.|..+|+|.|++++.+
T Consensus 174 KIvvGs~~G~lql~Nvrt~-------------------K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d 234 (910)
T KOG1539|consen 174 KIVVGSSQGRLQLWNVRTG-------------------KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD 234 (910)
T ss_pred eEEEeecCCcEEEEEeccC-------------------cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccC
Confidence 3456777777777744332 457888899999999999998889999999999999999999
Q ss_pred eEEEEeccCCCCeEEEEECCCCCE-EEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 003279 585 TVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 663 (834)
Q Consensus 585 ~~~~~l~~h~~~I~~l~fspdg~~-Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 663 (834)
+.+.+++...+.|+.+.|.-||.. +++|+..|.+.+||++..+........|.+.|..+.|.|... ++++++.|+.++
T Consensus 235 kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk 313 (910)
T KOG1539|consen 235 KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLK 313 (910)
T ss_pred cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc-eEeeccCCCcee
Confidence 999999855699999999999875 556666799999999987655555557777777777777643 666777777666
Q ss_pred EEECCCCc-----------------eee----------------------------------------------------
Q 003279 664 YWSINNGS-----------------CAG---------------------------------------------------- 674 (834)
Q Consensus 664 lwDl~s~~-----------------~i~---------------------------------------------------- 674 (834)
+|=.+++. +++
T Consensus 314 ~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~ 393 (910)
T KOG1539|consen 314 VWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKL 393 (910)
T ss_pred EEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhh
Confidence 65322110 000
Q ss_pred --------------------------------------------EeecC------CCeeEEEEecCCCEEEEEEcCCeEE
Q 003279 675 --------------------------------------------VFKCQ------SGATQMRFQPRLGRILAAAIENYIS 704 (834)
Q Consensus 675 --------------------------------------------~~~~~------~~i~~l~~sp~g~~ll~~s~dg~I~ 704 (834)
.+... ..+++++.++.|++.+.|...|.|.
T Consensus 394 k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id 473 (910)
T KOG1539|consen 394 KLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTID 473 (910)
T ss_pred cCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEE
Confidence 11111 2367889999999999999999999
Q ss_pred EEECCCCeEEEEE---eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc-------------------------
Q 003279 705 ILDVETQVCRLKL---QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG------------------------- 755 (834)
Q Consensus 705 iwDl~t~~~~~~l---~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~------------------------- 755 (834)
+|++.+|.....+ ..|..+|++++.+.-++.+++++ +|.+++||+.+....
T Consensus 474 ~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ 553 (910)
T KOG1539|consen 474 RFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL 553 (910)
T ss_pred EEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc
Confidence 9999999988888 47999999999999888888888 999999998764210
Q ss_pred -------------eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEE
Q 003279 756 -------------ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVA 822 (834)
Q Consensus 756 -------------~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~La 822 (834)
+.++.+.+|.+.|++++|||||++|++++.|++|++||+.++..+-....+.+.+.+.|+|+|.+||
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LA 633 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLA 633 (910)
T ss_pred CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEE
Confidence 1122456789999999999999999999999999999999999997778889999999999999999
Q ss_pred EEecC-CcEEEe
Q 003279 823 SASHD-KCVKIW 833 (834)
Q Consensus 823 Sgs~D-G~I~IW 833 (834)
|+..| .-|++|
T Consensus 634 T~Hvd~~gIylW 645 (910)
T KOG1539|consen 634 TVHVDQNGIYLW 645 (910)
T ss_pred EEEecCceEEEE
Confidence 99988 569999
No 93
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.9e-24 Score=230.42 Aligned_cols=294 Identities=20% Similarity=0.279 Sum_probs=230.4
Q ss_pred ccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccC-CCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 003279 493 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG-KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG 571 (834)
Q Consensus 493 ~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~-~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs 571 (834)
.+....+...+.++.+++.|++|.-|........+....+.-... .+..+.+-. ++|...|.+++.|+||+|||+|+
T Consensus 144 s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r--~~h~keil~~avS~Dgkylatgg 221 (479)
T KOG0299|consen 144 SVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR--KGHVKEILTLAVSSDGKYLATGG 221 (479)
T ss_pred cceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc--ccccceeEEEEEcCCCcEEEecC
Confidence 333344455567888999999999996655443322222210001 233333322 49999999999999999999999
Q ss_pred CCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCc
Q 003279 572 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 651 (834)
Q Consensus 572 ~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~ 651 (834)
.|..|.||+..+.+.+..+.+|.+.|.+++|-.....|++++.|++|++|+++...+ +.++.+|.+.|..|....- ..
T Consensus 222 ~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~-vetlyGHqd~v~~IdaL~r-eR 299 (479)
T KOG0299|consen 222 RDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY-VETLYGHQDGVLGIDALSR-ER 299 (479)
T ss_pred CCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH-HHHHhCCccceeeechhcc-cc
Confidence 999999999999999999999999999999998888999999999999999997655 7889999999999988765 44
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC------------
Q 003279 652 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG------------ 719 (834)
Q Consensus 652 llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~------------ 719 (834)
++.+|+.|+++++|++.....+....+.+.+.|++|-.+ .+|++|+.+|.|.+|++-+.+++++...
T Consensus 300 ~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~ 378 (479)
T KOG0299|consen 300 CVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVN 378 (479)
T ss_pred eEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccc
Confidence 777788999999999965554444445667899998876 7899999999999999999888876542
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEE
Q 003279 720 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELW 792 (834)
Q Consensus 720 h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~-~~~i~~~~~~~~~I~svafspdg~~L~sgs~d-g~I~Iw 792 (834)
++.+|++++..|...++++|+ +|.|++|-+..+-. ..++..+. -.+.|++++|+++|++|+++... ..+--|
T Consensus 379 ~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 379 GNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred cccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccccccccee
Confidence 223899999999999999999 99999999988732 34455555 56789999999999977776443 344334
No 94
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.9e-23 Score=201.21 Aligned_cols=290 Identities=18% Similarity=0.276 Sum_probs=231.3
Q ss_pred cccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003279 498 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 577 (834)
Q Consensus 498 ~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~ 577 (834)
.+.....+.++|+...+.++-.-++-.+.+. .-+..+..+....+.-+.|.+.|+|.+|+|+|.+||+|+.|++|+
T Consensus 39 ~fhp~g~lyavgsnskt~ric~yp~l~~~r~----~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik 114 (350)
T KOG0641|consen 39 AFHPAGGLYAVGSNSKTFRICAYPALIDLRH----AHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIK 114 (350)
T ss_pred EecCCCceEEeccCCceEEEEccccccCccc----ccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEE
Confidence 3344447889999998888874444333221 112223333445566678999999999999999999999999999
Q ss_pred EEeCCC--CeE---EEEeccCCCCeEEEEECCC----CCEEEEEe-CCCeEEEEecCCCCceeeeeccCCCCeEEE-EEc
Q 003279 578 LWCTES--FTV---KSTLEEHTQWITDVRFSPS----LSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSL-DFH 646 (834)
Q Consensus 578 IWd~~t--~~~---~~~l~~h~~~I~~l~fspd----g~~Latgs-~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl-~fs 646 (834)
+.-... ... ...+.-|.+.|.+++|..+ +.+|++++ .|..|++-|...+.. +..+.+|.+.|.++ .|+
T Consensus 115 ~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~-~~a~sghtghilalyswn 193 (350)
T KOG0641|consen 115 VLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG-FHALSGHTGHILALYSWN 193 (350)
T ss_pred EEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc-ceeecCCcccEEEEEEec
Confidence 875443 222 2456679999999999754 55677665 467788888887654 88899999999887 454
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCceeeEeec--------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 003279 647 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 718 (834)
Q Consensus 647 pdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~--------~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~ 718 (834)
..++++|+.|.+|++||++-..++.++.. .+.|..+++.|.|+.+++|-.|....+||++.++.+..+.
T Consensus 194 ---~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~ 270 (350)
T KOG0641|consen 194 ---GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH 270 (350)
T ss_pred ---CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC
Confidence 45899999999999999999998887753 2458899999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003279 719 GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 719 ~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~-~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
.|...|.|+.|+|...|+.+|+ |..|++-|+...-. ...+..+..|...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus 271 phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 271 PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred CCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 9999999999999999999999 99999999875321 13445566788999999999999889999999999999764
No 95
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.3e-24 Score=237.77 Aligned_cols=239 Identities=21% Similarity=0.317 Sum_probs=212.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc-CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCcee
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 630 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i 630 (834)
...|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|. +..+.+|+.|+.|..+|++......
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 78899999999999999999999999999999999999988 99999999997 6789999999999999999877655
Q ss_pred eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecC-CCEEEEEEc--CCeEEEE
Q 003279 631 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPR-LGRILAAAI--ENYISIL 706 (834)
Q Consensus 631 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~-g~~ll~~s~--dg~I~iw 706 (834)
..+.+|...|..+.|++|+. .+++|+.|+.+.|||.....+...+. |...|..++|+|- .+.|++|+. |+.|++|
T Consensus 295 ~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred hhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 66889999999999999976 78899999999999997666555554 5677999999995 455555543 8999999
Q ss_pred ECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003279 707 DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 783 (834)
Q Consensus 707 Dl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sg 783 (834)
|..++..+..+. ....|.+|.|++..+-|+++. ++.|.||++.+. ..+..+.+|...|..++++|||..|+++
T Consensus 374 n~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~~~l~gH~~RVl~la~SPdg~~i~t~ 449 (484)
T KOG0305|consen 374 NTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLVAELLGHTSRVLYLALSPDGETIVTG 449 (484)
T ss_pred EcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---ceeeeecCCcceeEEEEECCCCCEEEEe
Confidence 999999988876 567899999999987666654 779999999886 7888999999999999999999999999
Q ss_pred EcCCeEEEEECCCC
Q 003279 784 GCYETLELWNMTEN 797 (834)
Q Consensus 784 s~dg~I~Iwdl~~~ 797 (834)
+.|.++++|++-+.
T Consensus 450 a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 450 AADETLRFWNLFDE 463 (484)
T ss_pred cccCcEEeccccCC
Confidence 99999999998764
No 96
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.8e-25 Score=241.58 Aligned_cols=316 Identities=15% Similarity=0.227 Sum_probs=255.4
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 581 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~ 581 (834)
..+++.+|+.|+.++.|....+... ..-.....+..|.+.|..+....+|+.|++++.|-+|++|+.
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~-------------~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~ 102 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNE-------------PSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNA 102 (735)
T ss_pred CCceEEecCCCceEEEeccccccCC-------------cccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeec
Confidence 3468999999999999965544211 011135678899999999999999999999999999999999
Q ss_pred CCC--eEEEEeccCCCCeEEEEE-CCCCCEEEEEeCCCeEEEEecCCCCc---------eeeeec-cCCCCeEEEEEccC
Q 003279 582 ESF--TVKSTLEEHTQWITDVRF-SPSLSRLATSSADRTVRVWDTENPDY---------SLRTFT-GHSTTVMSLDFHPS 648 (834)
Q Consensus 582 ~t~--~~~~~l~~h~~~I~~l~f-spdg~~Latgs~Dg~I~IWDl~s~~~---------~i~~~~-~h~~~V~sl~fspd 648 (834)
..+ -++.++..|.+.|.|+++ .++...+|+|+-|+.|.|||++++.. ....+. ++...|++++..+.
T Consensus 103 ~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t 182 (735)
T KOG0308|consen 103 HKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT 182 (735)
T ss_pred ccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc
Confidence 877 577889999999999999 78889999999999999999996521 122333 78899999999998
Q ss_pred CCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEE
Q 003279 649 KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSV 727 (834)
Q Consensus 649 g~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl 727 (834)
+ .++++|+..+.|++||.++++.+..+.. ...|.++..+++|..++++++||+|++||+...+|+.++..|...|.++
T Consensus 183 ~-t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL 261 (735)
T KOG0308|consen 183 G-TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWAL 261 (735)
T ss_pred c-eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEE
Confidence 7 5888999999999999999888777764 5669999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE-----
Q 003279 728 CWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT----- 801 (834)
Q Consensus 728 ~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~----- 801 (834)
..+|+-.++++|+ |+.|+.-|+++...... +-....+|..+..+....-+.+++.|+.|+-|...-...+.
T Consensus 262 ~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tl---ick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~ 338 (735)
T KOG0308|consen 262 QSSPSFTHVYSGGRDGNIYRTDLRNPAKSTL---ICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDL 338 (735)
T ss_pred eeCCCcceEEecCCCCcEEecccCCchhheE---eecCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCC
Confidence 9999999999999 99999999998632222 22245677777777666666888889999999764221110
Q ss_pred --------------------eccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 802 --------------------LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 802 --------------------l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.......|...+.-.|.++++|=..+|.+.+||
T Consensus 339 ~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwD 391 (735)
T KOG0308|consen 339 DFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWD 391 (735)
T ss_pred CcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEE
Confidence 001112233444556778999999999999997
No 97
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=3e-24 Score=237.23 Aligned_cols=316 Identities=14% Similarity=0.188 Sum_probs=244.7
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCC-----------CCEEEEE
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-----------GKLLATG 570 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpd-----------g~~Lasg 570 (834)
....+.|--.|..+.+|+..|-..... ...+--|...|+.+.--|. ...++|+
T Consensus 335 t~~klscVYndhSlYvWDvrD~~kvgk----------------~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TC 398 (1080)
T KOG1408|consen 335 TTDKLSCVYNDHSLYVWDVRDVNKVGK----------------CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTC 398 (1080)
T ss_pred CCceEEEEEcCceEEEEeccccccccc----------------eeeeeeccceeeeeccccccccCcccccCCccceeEe
Confidence 346778888999999998877543321 2233346666666554441 1258899
Q ss_pred eCCCcEEEEeCCCCeEEEE-------------------------------------eccCCCCeEEEEECCCCCEEEEEe
Q 003279 571 GHDKKAVLWCTESFTVKST-------------------------------------LEEHTQWITDVRFSPSLSRLATSS 613 (834)
Q Consensus 571 s~Dg~I~IWd~~t~~~~~~-------------------------------------l~~h~~~I~~l~fspdg~~Latgs 613 (834)
+.|++|++||++.+..-.+ ..+....|.+++.+|++.+||+|.
T Consensus 399 SsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGD 478 (1080)
T KOG1408|consen 399 SSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGD 478 (1080)
T ss_pred cCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccC
Confidence 9999999999875211000 002334689999999999999999
Q ss_pred CCCeEEEEecCCCCceeeeeccCCCCeEEEEEccC--CCcEEEEEeCCCcEEEEECCC-CceeeEeec-CCCeeEEEEec
Q 003279 614 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINN-GSCAGVFKC-QSGATQMRFQP 689 (834)
Q Consensus 614 ~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspd--g~~llasgs~Dg~I~lwDl~s-~~~i~~~~~-~~~i~~l~~sp 689 (834)
.-|+++||++.+-.+ ......|...|.|+.|+.. +..+|++++.|..|.|||+.. ...+.++.. ...|+++.|..
T Consensus 479 r~GnlrVy~Lq~l~~-~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~ 557 (1080)
T KOG1408|consen 479 RGGNLRVYDLQELEY-TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC 557 (1080)
T ss_pred ccCceEEEEehhhhh-hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEee
Confidence 999999999987654 6677889999999999852 456899999999999999964 345555554 66799999988
Q ss_pred CC--CEEEEEEcCCeEEEEECCCCeEEEEEeC-----CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe
Q 003279 690 RL--GRILAAAIENYISILDVETQVCRLKLQG-----HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 761 (834)
Q Consensus 690 ~g--~~ll~~s~dg~I~iwDl~t~~~~~~l~~-----h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~ 761 (834)
.| ..+++++.|..|.+--.........+.. ....++.++..|..++++++. |..|+|||+.+++..+.+.--
T Consensus 558 ~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs 637 (1080)
T KOG1408|consen 558 NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGS 637 (1080)
T ss_pred cCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccc
Confidence 77 6788888888776543332111122221 234688999999999999998 999999999999544444444
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 762 SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 762 ~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
..|.+....+...|.|.||++.+.|.+|.+||..+++++ ...+|...|+.+.|.+|.+.|++++.||+|.||+
T Consensus 638 ~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 638 RDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred ccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence 556788899999999999999999999999999999999 7889999999999999999999999999999995
No 98
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=4.6e-24 Score=236.76 Aligned_cols=275 Identities=16% Similarity=0.266 Sum_probs=232.1
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE--EEeccCCCCeEE-EEECC-CCCEEEEEeCCCeE
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITD-VRFSP-SLSRLATSSADRTV 618 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~--~~l~~h~~~I~~-l~fsp-dg~~Latgs~Dg~I 618 (834)
..-+.+.||...|..|++.++. +++++++||++++|+-.....+ ..+.+|.+.|.+ ++|.+ ++-.|++|+.|.+|
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 3457789999999999987654 8999999999999997554443 456788888888 88886 55569999999999
Q ss_pred EEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEE
Q 003279 619 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 619 ~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~ 697 (834)
.+|...... ++.++.+|...|+|++...++. +++|+.|.++++|-+. ++...+. |...|..+...|+. .+++|
T Consensus 84 ~v~~~~~~~-P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTg 157 (745)
T KOG0301|consen 84 IVFKLSQAE-PLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTG 157 (745)
T ss_pred EEEecCCCC-chhhhhccccceeeeecCCcCc--eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEec
Confidence 999998754 6899999999999999876654 6799999999999775 3333344 46678999999986 89999
Q ss_pred EcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003279 698 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 777 (834)
Q Consensus 698 s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg 777 (834)
+.|..|++|.- ++++.+|.+|.+.|+.+++-+++.+|.++.||.|++|++ ++ +++.+..+|..-++++....++
T Consensus 158 saDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~g---e~l~~~~ghtn~vYsis~~~~~ 231 (745)
T KOG0301|consen 158 SADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DG---EVLLEMHGHTNFVYSISMALSD 231 (745)
T ss_pred cCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cC---ceeeeeeccceEEEEEEecCCC
Confidence 99999999986 678899999999999999999888887777999999999 44 6899999999999999988888
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEeccCCC-CeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 778 PSLLVIGCYETLELWNMTENKTLTLSAHDK-LVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 778 ~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~-~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
..|++++.|++++||+.. ++.....|.. .|+++++-++|. |++|+.||.|+||
T Consensus 232 ~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 232 GLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF 285 (745)
T ss_pred CeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence 899999999999999977 5554444544 899999988776 6778899999998
No 99
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.7e-24 Score=227.19 Aligned_cols=282 Identities=17% Similarity=0.248 Sum_probs=237.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCeEEEEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCCc
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDY 628 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~--t~~~~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~IWDl~s~~~ 628 (834)
.+.|+|+.|+|...+|++|+.|++++||-++ ....+..+.-...+|.+++|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 4679999999999999999999999999765 4456677767778999999999999 899999999999999987654
Q ss_pred e-eeeeccCC-CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 003279 629 S-LRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL 706 (834)
Q Consensus 629 ~-i~~~~~h~-~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iw 706 (834)
. +....++. ..+..+..++++. +|+..+..|.|.+....+++.+..++..+.+..++|+.+++.|++++.+|.|++|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred ccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 2 22233333 4577788899987 6668888999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEeCCCC-CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC---CCceeEEEeecCCCceEEEEEeCCCCEEE
Q 003279 707 DVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS-DELVRVWSIGSG---SKGECIHELSCTGNKFHSCVFHPTFPSLL 781 (834)
Q Consensus 707 Dl~t~~~~~~l~~h~~-~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~---~~~~~i~~~~~~~~~I~svafspdg~~L~ 781 (834)
|++...+++.+....+ .-+++|.++++.|||+|+ .|.|.|||..+. ...+++..+..-...|+++.|+++...|+
T Consensus 372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLA 451 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILA 451 (514)
T ss_pred ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhh
Confidence 9999999988874322 235788889999999999 889999997643 33567777777788999999999999888
Q ss_pred EEEc--CCeEEEEECCCCeEE-Eec---cCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 782 VIGC--YETLELWNMTENKTL-TLS---AHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 782 sgs~--dg~I~Iwdl~~~~~~-~l~---~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.++. ++.+++..+.+..+. .+. ..-+.|+|++|+|.+.+||.|..+|.|.+|+
T Consensus 452 iaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 452 IASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred hhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 8776 458999999887776 222 3346799999999999999999999999995
No 100
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=9.2e-24 Score=225.93 Aligned_cols=277 Identities=18% Similarity=0.262 Sum_probs=234.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC---eEEEEec--cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~---~~~~~l~--~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 624 (834)
.|..-|.++.+|...++++||+. |.|+|||+... .++..+. .....|.++.+.|||+.|++|++-.+|.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 68888999999999999999986 89999998742 2333332 345679999999999999999999999999998
Q ss_pred CCCceeee-eccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCe
Q 003279 625 NPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENY 702 (834)
Q Consensus 625 s~~~~i~~-~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~ 702 (834)
.....++. +....-....++.+||.+ +.++|..||.|.|||+.+...++.|.. .+++.||.++++|..|.+|+-|++
T Consensus 496 apTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 76643332 233334577889999976 555777799999999999999999985 677999999999999999999999
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 003279 703 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 781 (834)
Q Consensus 703 I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~ 781 (834)
|+.||+++++.+.... ....|.++.++|.+.+|++|. ++.|.|...... ..+.+..|...|.++.|.+.|++++
T Consensus 575 vRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp----~kyqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP----EKYQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred eeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCc----cceeecccccEEEEEEecccCceee
Confidence 9999999987765544 567899999999999999999 778888877654 3445667889999999999999999
Q ss_pred EEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 782 VIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 782 sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
+.+.|+-+..|...-|..+.-......|.++.++.|.++|+||+.|....||
T Consensus 650 StGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 650 STGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred ecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEE
Confidence 9999999999999888877666778899999999999999999999887776
No 101
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=4e-22 Score=214.85 Aligned_cols=285 Identities=14% Similarity=0.123 Sum_probs=212.4
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEeCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE 582 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~L-asgs~Dg~I~IWd~~ 582 (834)
.++++++.|+.+.+|..... ..+..+..|.. +.+++|+|+++.+ ++++.++.|++||..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~-------------------~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~ 61 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL-------------------EVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLA 61 (300)
T ss_pred cEEEEecCCCEEEEEECCCC-------------------ceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECC
Confidence 45678888999999964322 12344444543 6789999999976 566788999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEE-eCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC-C
Q 003279 583 SFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-S 660 (834)
Q Consensus 583 t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D-g 660 (834)
+++.+..+..+.. +..++|+|+++.++++ +.|+.|++||+.+... +..+. +...+.+++|+|++..++ +++.+ .
T Consensus 62 ~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~-~~~~~-~~~~~~~~~~~~dg~~l~-~~~~~~~ 137 (300)
T TIGR03866 62 TGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKV-LAEIP-VGVEPEGMAVSPDGKIVV-NTSETTN 137 (300)
T ss_pred CCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE-EeEee-CCCCcceEEECCCCCEEE-EEecCCC
Confidence 9988877765544 5788999999877655 5689999999987543 44443 234578899999988555 45444 4
Q ss_pred cEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEEeCCC-----C--CEEEEEEcCC
Q 003279 661 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHK-----N--QVHSVCWNTS 732 (834)
Q Consensus 661 ~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s-~dg~I~iwDl~t~~~~~~l~~h~-----~--~I~sl~~spd 732 (834)
.+.+||.++++.+..+.....+.++.|++++..+++++ .++.|++||+++++.+..+..+. . ....++|+|+
T Consensus 138 ~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d 217 (300)
T TIGR03866 138 MAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKD 217 (300)
T ss_pred eEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCC
Confidence 67788999888776665556678899999999887665 58999999999998776654321 1 2356889999
Q ss_pred CCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEeccCCCCe
Q 003279 733 GEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLSAHDKLV 809 (834)
Q Consensus 733 g~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs-~dg~I~Iwdl~~~~~~~l~~h~~~V 809 (834)
+++++++. ++.|.+||+.++ +.+..+. +...+.+++|+|++.+|++++ .++.|.+||+.+++++.........
T Consensus 218 g~~~~~~~~~~~~i~v~d~~~~---~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 293 (300)
T TIGR03866 218 GKTAFVALGPANRVAVVDAKTY---EVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLP 293 (300)
T ss_pred CCEEEEEcCCCCeEEEEECCCC---cEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccccc
Confidence 99865543 778999999876 3443332 345788999999999998874 5889999999999987444455777
Q ss_pred EEEEEeC
Q 003279 810 SSLAAST 816 (834)
Q Consensus 810 ~~lafsp 816 (834)
+.++++|
T Consensus 294 ~~~~~~~ 300 (300)
T TIGR03866 294 WGVVVRP 300 (300)
T ss_pred ceeEeCC
Confidence 8888875
No 102
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=9.9e-24 Score=215.22 Aligned_cols=276 Identities=20% Similarity=0.319 Sum_probs=221.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeec
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 634 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~ 634 (834)
-.||.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|++||+.|+|+|.|..|.+||+..+.. +..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~-l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP-LKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc-eeEEE
Confidence 78999999999999999999999999999998899999999999999999999999999999999999998874 44443
Q ss_pred cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec------CCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 003279 635 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMRFQPRLGRILAAAIENYISILDV 708 (834)
Q Consensus 635 ~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~------~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl 708 (834)
...+|+.+.|+|...+.++++-.+..-.+.++..++.. .+.. +....+..|++.|++|++|...|.+.+||.
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 67899999999987777766666666666666643221 1211 112344568999999999999999999999
Q ss_pred CCCeEEEEEeCCC-CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC------CceeEEEee--cCCCceEEEEEeCCCC
Q 003279 709 ETQVCRLKLQGHK-NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS------KGECIHELS--CTGNKFHSCVFHPTFP 778 (834)
Q Consensus 709 ~t~~~~~~l~~h~-~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~------~~~~i~~~~--~~~~~I~svafspdg~ 778 (834)
.+.+++..++-.. ..|..+.++..|++|+.-+ |..|+.|+++.-. ..+..+.+. .....-.+|+|+.+|.
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge 262 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE 262 (405)
T ss_pred chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc
Confidence 9999998887655 7889999999999999877 9999999987321 111112211 1234557899999999
Q ss_pred EEEEEEcC-CeEEEEECCCCeEEEe-ccCC-CCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 779 SLLVIGCY-ETLELWNMTENKTLTL-SAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 779 ~L~sgs~d-g~I~Iwdl~~~~~~~l-~~h~-~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
|+++++.. ..++||....|.++++ .+.+ ....++.|+|-...|++- ..|.|+||.
T Consensus 263 Yv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 263 YVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred EEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence 99888754 3899999999998854 4555 568899999998888887 779999994
No 103
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=8.1e-23 Score=236.16 Aligned_cols=229 Identities=17% Similarity=0.233 Sum_probs=177.0
Q ss_pred EEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCe--------EEEEeccCCCCeEEEEECCCCCE-EEEEe
Q 003279 544 EFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFT--------VKSTLEEHTQWITDVRFSPSLSR-LATSS 613 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpd-g~~Lasgs~Dg~I~IWd~~t~~--------~~~~l~~h~~~I~~l~fspdg~~-Latgs 613 (834)
.+..+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++. .+..+.+|...|.+++|+|++.. |++++
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 46778999999999999996 7899999999999999997542 34567899999999999998875 57899
Q ss_pred CCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCC-eeE-----EEE
Q 003279 614 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQ-----MRF 687 (834)
Q Consensus 614 ~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~-i~~-----l~~ 687 (834)
.|++|+|||+.++.. +..+. |...|.+++|+|+|. +|++++.|+.|++||+++++.+..+..+.. +.. ..|
T Consensus 146 ~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~f 222 (568)
T PTZ00420 146 FDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGL 222 (568)
T ss_pred CCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeE
Confidence 999999999998764 34443 567899999999987 666788899999999999998888775443 222 234
Q ss_pred ecCCCEEEEEEcCC----eEEEEECCC-CeEEEEEe--CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEE
Q 003279 688 QPRLGRILAAAIEN----YISILDVET-QVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 759 (834)
Q Consensus 688 sp~g~~ll~~s~dg----~I~iwDl~t-~~~~~~l~--~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~ 759 (834)
++++++|++++.++ .|+|||+++ ..++..+. .+.+.+......+++.++++|. |+.|++|++..+. ...+.
T Consensus 223 s~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~ 301 (568)
T PTZ00420 223 GGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVN 301 (568)
T ss_pred cCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeec
Confidence 58889999988774 799999995 45554443 2333343444455688888887 9999999998752 23333
Q ss_pred EeecCCCceEEEEEeCCC
Q 003279 760 ELSCTGNKFHSCVFHPTF 777 (834)
Q Consensus 760 ~~~~~~~~I~svafspdg 777 (834)
.+. +..++..++|.|..
T Consensus 302 ~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 302 EYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred ccc-cCCCccceEEcccc
Confidence 333 55678889999974
No 104
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=2e-23 Score=222.76 Aligned_cols=273 Identities=21% Similarity=0.295 Sum_probs=225.0
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE----EE---e-----------ccCCCCeEEEEECCCC
Q 003279 545 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----ST---L-----------EEHTQWITDVRFSPSL 606 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~----~~---l-----------~~h~~~I~~l~fspdg 606 (834)
+..+..|.-+|+||+++||.+++++++.|++|.=|++.+++.. .. + +.|...|.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 6788899999999999999999999999999999998877643 11 0 2688899999999999
Q ss_pred CEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEe-ecCCCeeEE
Q 003279 607 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQM 685 (834)
Q Consensus 607 ~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~-~~~~~i~~l 685 (834)
+||++|+.|..|.||+..+... +..+.+|.+.|.+++|-.. ..-+++++.|+.|++|++.....+.++ .|.+.|..+
T Consensus 215 kylatgg~d~~v~Iw~~~t~eh-v~~~~ghr~~V~~L~fr~g-t~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEH-VKVFKGHRGAVSSLAFRKG-TSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred cEEEecCCCceEEEecCcccch-hhcccccccceeeeeeecC-ccceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 9999999999999999998664 7889999999999999765 445668999999999999987766554 467889999
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec-
Q 003279 686 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC- 763 (834)
Q Consensus 686 ~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~- 763 (834)
.....++.+-+++.|.++++|++.. +....+.+|.+.+-|++|-.+..+ ++|+ +|.|.+|++.+. +++.....
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~Hf-vsGSdnG~IaLWs~~KK---kplf~~~~A 367 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDEHF-VSGSDNGSIALWSLLKK---KPLFTSRLA 367 (479)
T ss_pred chhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecccce-eeccCCceEEEeeeccc---CceeEeecc
Confidence 9888888888888999999999943 445567788999999999866554 5555 999999999876 33333221
Q ss_pred -----------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe----EEEeccCCCCeEEEEEeCCCCEEEEE
Q 003279 764 -----------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK----TLTLSAHDKLVSSLAASTVNGMVASA 824 (834)
Q Consensus 764 -----------~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~----~~~l~~h~~~V~~lafspdg~~LaSg 824 (834)
+...|++++..|....+++|+.+|+|++|-+.++- ++.-....+.|++|+|+++|+.|++|
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 11278999999999999999999999999998872 23333467899999999999966655
No 105
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=2.8e-23 Score=207.94 Aligned_cols=234 Identities=19% Similarity=0.291 Sum_probs=212.3
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 003279 589 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 668 (834)
Q Consensus 589 ~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~ 668 (834)
.+.+|+.+++-|.|+.+|.+|++|+.|.++.||-..+++ .+-++.+|.+.|+|++.+.+.+ .+++|+.|.++++||++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe-rlGty~GHtGavW~~Did~~s~-~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE-RLGTYDGHTGAVWCCDIDWDSK-HLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-eeeeecCCCceEEEEEecCCcc-eeeeccccceeEEEEcC
Confidence 457899999999999999999999999999999887765 4899999999999999998866 56699999999999999
Q ss_pred CCceeeEeecCCCeeEEEEecCCCEEEEEEcC-----CeEEEEECC-------CCeEEEEEeCCCCCEEEEEEcCCCCEE
Q 003279 669 NGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-----NYISILDVE-------TQVCRLKLQGHKNQVHSVCWNTSGEYL 736 (834)
Q Consensus 669 s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d-----g~I~iwDl~-------t~~~~~~l~~h~~~I~sl~~spdg~~L 736 (834)
+|+++..++.+..|..+.|++++++++++..+ +.|.+||++ ..++...+..+...++.+.|.|-+++|
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 99999999999999999999999998888763 579999998 456788888899999999999999999
Q ss_pred EEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEe
Q 003279 737 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAS 815 (834)
Q Consensus 737 asgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafs 815 (834)
++|. ||.|.+||++++. +.+.....|...|+.+.++++..++++++.|.+-++||+.+-.+++....+.+|++.+++
T Consensus 163 i~Ghe~G~is~~da~~g~--~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aais 240 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGK--ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAIS 240 (327)
T ss_pred EEecCCCcEEEEEcccCc--eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecc
Confidence 9999 9999999999984 566666778889999999999999999999999999999999999888889999999999
Q ss_pred CCCCEEEEEec
Q 003279 816 TVNGMVASASH 826 (834)
Q Consensus 816 pdg~~LaSgs~ 826 (834)
|....++.|+.
T Consensus 241 P~~d~VilgGG 251 (327)
T KOG0643|consen 241 PLLDHVILGGG 251 (327)
T ss_pred cccceEEecCC
Confidence 98887777653
No 106
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.2e-23 Score=211.95 Aligned_cols=259 Identities=19% Similarity=0.310 Sum_probs=208.6
Q ss_pred EEEEeCCCcEEEEeCCC------------CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeec
Q 003279 567 LATGGHDKKAVLWCTES------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 634 (834)
Q Consensus 567 Lasgs~Dg~I~IWd~~t------------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~ 634 (834)
|++|++...|.-+++.- ..++..+..|.++|++++. ++.++|+||.|-+|+|||+.... .+..+.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~-qlg~ll 80 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK-QLGILL 80 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh-hhccee
Confidence 56677766666665431 2234566789999999999 58899999999999999999755 477888
Q ss_pred cCCCCeEEEEEccCCC-cEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003279 635 GHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQV 712 (834)
Q Consensus 635 ~h~~~V~sl~fspdg~-~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~ 712 (834)
.|.+.|+++.|.+.-. .-|++|+.||.|.+|+.....++..++. ...|+.++++|.++..++.+.|+.+++||+-+|+
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 8999999999998643 1345999999999999999999998885 4559999999999999999999999999999987
Q ss_pred EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003279 713 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 792 (834)
Q Consensus 713 ~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iw 792 (834)
.-..+.- ....+.+.|+|.|.+++.+....|-||.+.+.. ...++.. ...+.++.|- ++..|++|+.++.|.+|
T Consensus 161 ~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~---v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~ 234 (362)
T KOG0294|consen 161 VAFVLNL-KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNAS---VFREIEN-PKRILCATFL-DGSELLVGGDNEWISLK 234 (362)
T ss_pred cceeecc-CCcceeeEEcCCCCEEEEEeccEEEEEecccHh---Hhhhhhc-cccceeeeec-CCceEEEecCCceEEEe
Confidence 6655542 233455999999999999888889999998752 2222222 2445555554 45679999999999999
Q ss_pred ECCCCeEE-EeccCCCCeEEEEE--eCCCCEEEEEecCCcEEEeC
Q 003279 793 NMTENKTL-TLSAHDKLVSSLAA--STVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 793 dl~~~~~~-~l~~h~~~V~~laf--spdg~~LaSgs~DG~I~IWd 834 (834)
|.++..+. .+.+|+..|-++.+ .|++.+|+|++.||.|+|||
T Consensus 235 D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 235 DTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred ccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 99987766 67799999999984 35678999999999999997
No 107
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=7.8e-23 Score=208.08 Aligned_cols=276 Identities=18% Similarity=0.258 Sum_probs=215.7
Q ss_pred cccCCCCCceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecC
Q 003279 471 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 550 (834)
Q Consensus 471 ~~~~~s~~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~g 550 (834)
...++.++.+.+.|++. .+.++++||.|++||+|...+.... . -+....
T Consensus 22 v~~pP~DsIS~l~FSP~--------------~~~~~~A~SWD~tVR~wevq~~g~~----------------~-~ka~~~ 70 (347)
T KOG0647|consen 22 VPNPPEDSISALAFSPQ--------------ADNLLAAGSWDGTVRIWEVQNSGQL----------------V-PKAQQS 70 (347)
T ss_pred cCCCcccchheeEeccc--------------cCceEEecccCCceEEEEEecCCcc----------------c-chhhhc
Confidence 33444556777888872 2478889999999999976654211 0 134457
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCC--EEEEEeCCCeEEEEecCCCCc
Q 003279 551 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPDY 628 (834)
Q Consensus 551 H~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~--~Latgs~Dg~I~IWDl~s~~~ 628 (834)
|.++|.+++|+.||..+++|+.|+.+++||+.++. +..+..|.++|.++.|-+... .|+|||.|++|+.||.+....
T Consensus 71 ~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p 149 (347)
T KOG0647|consen 71 HDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP 149 (347)
T ss_pred cCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe
Confidence 99999999999999999999999999999999984 556678999999999988655 899999999999999997553
Q ss_pred eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeE-ee--cCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003279 629 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK--CQSGATQMRFQPRLGRILAAAIENYISI 705 (834)
Q Consensus 629 ~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~-~~--~~~~i~~l~~sp~g~~ll~~s~dg~I~i 705 (834)
+.++. -.+.|++++.- ..+++++..++.|.+|+++++..... .. ..-.+.|+++..+....+.|+.+|.+.|
T Consensus 150 -v~t~~-LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~i 224 (347)
T KOG0647|consen 150 -VATLQ-LPERVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAI 224 (347)
T ss_pred -eeeee-ccceeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEE
Confidence 44443 34667777765 33777888899999999987643322 11 2345899999999888999999999999
Q ss_pred EECCCC--eEEEEEeCCCC---------CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003279 706 LDVETQ--VCRLKLQGHKN---------QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 773 (834)
Q Consensus 706 wDl~t~--~~~~~l~~h~~---------~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svaf 773 (834)
..+..+ +.-..|+.|.. .|++|+|+|....|++.+ ||++.+||-... ..+.....+..+|++++|
T Consensus 225 q~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar---~kLk~s~~~~qpItcc~f 301 (347)
T KOG0647|consen 225 QYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR---TKLKTSETHPQPITCCSF 301 (347)
T ss_pred EecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh---hhhhccCcCCCccceeEe
Confidence 988876 44455555542 577899999776676655 999999998776 566777788999999999
Q ss_pred eCCCCEEEEEEcC
Q 003279 774 HPTFPSLLVIGCY 786 (834)
Q Consensus 774 spdg~~L~sgs~d 786 (834)
+.+|.+++.+.+.
T Consensus 302 n~~G~ifaYA~gY 314 (347)
T KOG0647|consen 302 NRNGSIFAYALGY 314 (347)
T ss_pred cCCCCEEEEEeec
Confidence 9999988876553
No 108
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=3.2e-23 Score=230.16 Aligned_cols=261 Identities=18% Similarity=0.310 Sum_probs=224.5
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEE-EEEcC-CCCEEEEEeCCCcEEEEeC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES-CHFSP-DGKLLATGGHDKKAVLWCT 581 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~s-l~fSp-dg~~Lasgs~Dg~I~IWd~ 581 (834)
..+.++|.|+++++|.-.+. .+.+...+.+|.+-|.+ ++|-+ ++-.|++|+.|++|.+|..
T Consensus 26 ~~i~s~sRd~t~~vw~~~~~-----------------~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~ 88 (745)
T KOG0301|consen 26 VCIISGSRDGTVKVWAKKGK-----------------QYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKL 88 (745)
T ss_pred eEEeecCCCCceeeeeccCc-----------------ccccceecccCcceeeccceeccccCcceEeecccceEEEEec
Confidence 46889999999999954333 33455677888888888 88885 5557999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCc
Q 003279 582 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 661 (834)
Q Consensus 582 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 661 (834)
....++.++.+|...|+|+....++. +++||.|.++++|.+.. +...+.+|...|+++.+-|++ .+++|+.|.+
T Consensus 89 ~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKt 162 (745)
T KOG0301|consen 89 SQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPEN--TYVTGSADKT 162 (745)
T ss_pred CCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh---hhcccCCcchheeeeeecCCC--cEEeccCcce
Confidence 99999999999999999999888877 99999999999998875 345689999999999999986 5669999999
Q ss_pred EEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 003279 662 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 740 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs 740 (834)
|++|.- ++++++|.. .+.|..+++-++ ..|++++.||.|++|++ +++++.++.+|.+.|++++...++..+++++
T Consensus 163 IklWk~--~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g 238 (745)
T KOG0301|consen 163 IKLWKG--GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTG 238 (745)
T ss_pred eeeccC--CchhhhhccchhheeeeEEecC-CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEec
Confidence 999976 677777775 455888888886 56899999999999999 7899999999999999999777777888888
Q ss_pred -CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003279 741 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 797 (834)
Q Consensus 741 -Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~ 797 (834)
|++++||+.. ++...+......|+++.+-++|. |++|++||.|+||.....
T Consensus 239 EDrtlriW~~~-----e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 239 EDRTLRIWKKD-----ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred CCceEEEeecC-----ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 9999999876 67777777778999999999987 899999999999987643
No 109
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=1.7e-23 Score=225.03 Aligned_cols=285 Identities=15% Similarity=0.219 Sum_probs=218.4
Q ss_pred CcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEE
Q 003279 491 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATG 570 (834)
Q Consensus 491 ~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasg 570 (834)
+-.+++-.++.....+++|++|-+|+.|+-..-... . ..|+.+ .+.-...|.++.|++.|..|++.
T Consensus 167 tk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas----~--------~~fr~l--~P~E~h~i~sl~ys~Tg~~iLvv 232 (641)
T KOG0772|consen 167 TKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS----M--------RSFRQL--QPCETHQINSLQYSVTGDQILVV 232 (641)
T ss_pred ceEEEEeeecCCCceeeeccccceEEEEeccccccc----c--------hhhhcc--CcccccccceeeecCCCCeEEEE
Confidence 344455555666678899999999999955432111 0 112222 23445579999999999999888
Q ss_pred eCCCcEEEEeCCCCeEEEE------------eccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCCCceeeeec---
Q 003279 571 GHDKKAVLWCTESFTVKST------------LEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFT--- 634 (834)
Q Consensus 571 s~Dg~I~IWd~~t~~~~~~------------l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~s~~~~i~~~~--- 634 (834)
+....++|+|-+....... .++|...++|.+|+|+ ...|+|++.||+++|||++..+.-...+.
T Consensus 233 sg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~ 312 (641)
T KOG0772|consen 233 SGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP 312 (641)
T ss_pred ecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc
Confidence 8888999999665544433 2589999999999996 45799999999999999987654333332
Q ss_pred --cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeE--ee--c--CCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 003279 635 --GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV--FK--C--QSGATQMRFQPRLGRILAAAIENYISIL 706 (834)
Q Consensus 635 --~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~--~~--~--~~~i~~l~~sp~g~~ll~~s~dg~I~iw 706 (834)
+..-.++.++|+++++. ||+|..||.|.+|+..+...... +. | ...|+|+.|+++|++|++-+.|+.+++|
T Consensus 313 ~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvW 391 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVW 391 (641)
T ss_pred CCCcccCceeeecCCCcch-hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeee
Confidence 23457899999999885 77888899999999865432222 22 2 3479999999999999999999999999
Q ss_pred ECCCC-eEEEEEeC--CCCCEEEEEEcCCCCEEEEEe-------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC
Q 003279 707 DVETQ-VCRLKLQG--HKNQVHSVCWNTSGEYLASVS-------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 776 (834)
Q Consensus 707 Dl~t~-~~~~~l~~--h~~~I~sl~~spdg~~Lasgs-------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspd 776 (834)
|++.. +++....+ ...+-+.++|||+.++|++|. .+.+.+||..+. ..+..+......|..|.|+|.
T Consensus 392 DLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~---d~v~ki~i~~aSvv~~~Whpk 468 (641)
T KOG0772|consen 392 DLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL---DTVYKIDISTASVVRCLWHPK 468 (641)
T ss_pred eccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---eeEEEecCCCceEEEEeecch
Confidence 99975 55555554 233567899999999999986 247999998887 677777777889999999999
Q ss_pred CCEEEEEEcCCeEEEEE
Q 003279 777 FPSLLVIGCYETLELWN 793 (834)
Q Consensus 777 g~~L~sgs~dg~I~Iwd 793 (834)
-+.|++++.||.++||=
T Consensus 469 LNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 469 LNQIFAGSGDGTAHVYY 485 (641)
T ss_pred hhheeeecCCCceEEEE
Confidence 99999999999998873
No 110
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=1e-22 Score=226.03 Aligned_cols=334 Identities=20% Similarity=0.261 Sum_probs=248.2
Q ss_pred CcccCCCceEEeccCCCCeEEeecCCCCCCC-----cccccccccCCCeeeeEE-------EEecCCCCCeEEEEEcCCC
Q 003279 497 NQLTDMDRFVDDGSLDDNVESFLSPDDADPR-----DRVGRSAEVGKGFTFTEF-------QLIPASTSKVESCHFSPDG 564 (834)
Q Consensus 497 ~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~-----~~~~~~~~~~~g~~~~~~-------~~l~gH~~~V~sl~fSpdg 564 (834)
+.....+-+++++|.|..|++|......+.. +......+...-....++ ..+.||++.|.++.|+|.+
T Consensus 200 ~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~ 279 (764)
T KOG1063|consen 200 ARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEG 279 (764)
T ss_pred hccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccch
Confidence 3334457899999999999999333222111 111111110011111122 3456999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCC--eEE-----EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc--eeeeecc
Q 003279 565 KLLATGGHDKKAVLWCTESF--TVK-----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTG 635 (834)
Q Consensus 565 ~~Lasgs~Dg~I~IWd~~t~--~~~-----~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~--~i~~~~~ 635 (834)
..|++++.|+++.||..++. --+ ..+.+.........|+|++..+++-+..|-.++|....... ....+.+
T Consensus 280 ~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSG 359 (764)
T KOG1063|consen 280 LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISG 359 (764)
T ss_pred hhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccc
Confidence 99999999999999976543 222 22234455688999999999999999999999999333221 2345679
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCcee-----eEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003279 636 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-----GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 710 (834)
Q Consensus 636 h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i-----~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t 710 (834)
|.+.|.+++|+|.|++++ +.+.|-+-++|-.-..+.. +.-.|...++|+++-+..-.|++|+.+..+++|+...
T Consensus 360 H~~~V~dv~W~psGeflL-svs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk 438 (764)
T KOG1063|consen 360 HVDGVKDVDWDPSGEFLL-SVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPK 438 (764)
T ss_pred ccccceeeeecCCCCEEE-EeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcH
Confidence 999999999999998555 8888999998865421111 1112456689999988666777888888888886421
Q ss_pred -------------------------------------------CeE---------------------------------E
Q 003279 711 -------------------------------------------QVC---------------------------------R 714 (834)
Q Consensus 711 -------------------------------------------~~~---------------------------------~ 714 (834)
|.. +
T Consensus 439 ~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv 518 (764)
T KOG1063|consen 439 SFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEV 518 (764)
T ss_pred HHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhh
Confidence 000 1
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 003279 715 LKLQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET 788 (834)
Q Consensus 715 ~~l~~h~~~I~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~ 788 (834)
.++.+|...|++++.+|+++++|++. . ..|++|+..+- ..+..+..|.-.|+.++|+||+++|++++.|.+
T Consensus 519 ~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W---~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt 595 (764)
T KOG1063|consen 519 HKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW---LQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT 595 (764)
T ss_pred HHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch---hhhheecccceEEEEEEECCCCcEEEEeecCce
Confidence 12347888999999999999999987 2 27999999877 566688999999999999999999999999999
Q ss_pred EEEEECCCCeEE-----EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 789 LELWNMTENKTL-----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 789 I~Iwdl~~~~~~-----~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+.+|........ ....|...|+++.|+|++.++||+|.|.+|+||.
T Consensus 596 ~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 596 VSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred EEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 999998654433 3678999999999999999999999999999994
No 111
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1e-23 Score=208.81 Aligned_cols=248 Identities=21% Similarity=0.291 Sum_probs=204.2
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC---eEEEEeccCCCCeEEEEECC--CCCEEEEEeCCCeEEEEe
Q 003279 548 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD 622 (834)
Q Consensus 548 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~---~~~~~l~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~IWD 622 (834)
-..|.+.|..+...-.|++|||++.|++|+|+.+++. ..+.+|.+|.++|..++|.. -|.+||++++||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 3579999999999989999999999999999998753 56789999999999999976 699999999999999999
Q ss_pred cCCCCce-eeeeccCCCCeEEEEEccCC-CcEEEEEeCCCcEEEEECCCC-c-ee--eEeecCCCeeEEEEecC---C--
Q 003279 623 TENPDYS-LRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNG-S-CA--GVFKCQSGATQMRFQPR---L-- 691 (834)
Q Consensus 623 l~s~~~~-i~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~lwDl~s~-~-~i--~~~~~~~~i~~l~~sp~---g-- 691 (834)
-..+... ...+..|...|++++|.|.+ ..+|++++.||.|.|.+.+.. . .. ..+.|.-++++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 9887542 34567899999999999965 456778899999999998764 1 11 12235677999999985 4
Q ss_pred ---------CEEEEEEcCCeEEEEECCCC--eEEEEEeCCCCCEEEEEEcCCC----CEEEEEe-CCeEEEEEcCCCCCc
Q 003279 692 ---------GRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVRVWSIGSGSKG 755 (834)
Q Consensus 692 ---------~~ll~~s~dg~I~iwDl~t~--~~~~~l~~h~~~I~sl~~spdg----~~Lasgs-Dg~I~IwDl~s~~~~ 755 (834)
+.|++|+.|+.|+||+..++ +...++.+|.+.|+.++|.|.- .+|++++ ||+|.||..+.....
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 56999999999999999875 3445688999999999999964 5789999 999999988743222
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003279 756 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 756 ~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
-....+......+..+.|+..|+.|++++.|+.|.+|.-.
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 2333344456789999999999999999999999999643
No 112
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.8e-23 Score=226.77 Aligned_cols=290 Identities=17% Similarity=0.222 Sum_probs=233.3
Q ss_pred CeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCC--EEEEEeCCC
Q 003279 539 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADR 616 (834)
Q Consensus 539 g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~--~Latgs~Dg 616 (834)
.+...+...++||++.|.||+..|.|.+||+|+.||+|+||.+.+++++.++. ..+.|.||+|+|.+. .||++- +.
T Consensus 387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~ 464 (733)
T KOG0650|consen 387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GE 464 (733)
T ss_pred CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe-cC
Confidence 35556677889999999999999999999999999999999999999999885 456899999999754 344433 33
Q ss_pred eEEEEecCCC------------------------------------CceeeeeccCCCCeEEEEEccCCCcEEEEEeCC-
Q 003279 617 TVRVWDTENP------------------------------------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN- 659 (834)
Q Consensus 617 ~I~IWDl~s~------------------------------------~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D- 659 (834)
.+.|.+..-+ ..-++....|...|..+.|+..|+++..++..+
T Consensus 465 ~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~ 544 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG 544 (733)
T ss_pred ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence 3444432211 011234455888999999999999776655433
Q ss_pred -CcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEE
Q 003279 660 -SEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 737 (834)
Q Consensus 660 -g~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~La 737 (834)
..|.|+++.......-|. ..+.+.++.|+|...+|++++ ...|+|||+...+.+..+.....+|.+++++|.|..|+
T Consensus 545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli 623 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLI 623 (733)
T ss_pred cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEE
Confidence 478999998877766664 457799999999988777766 47899999999888887777788999999999999999
Q ss_pred EEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC-------CCCeEE---EeccCC
Q 003279 738 SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM-------TENKTL---TLSAHD 806 (834)
Q Consensus 738 sgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl-------~~~~~~---~l~~h~ 806 (834)
+++ |+.+..||+.-.. ++...+..|...+++++||+..+.+++++.|+++.||.- .+..++ .+.+|.
T Consensus 624 ~gs~d~k~~WfDldlss--kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~ 701 (733)
T KOG0650|consen 624 LGSYDKKMCWFDLDLSS--KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE 701 (733)
T ss_pred EecCCCeeEEEEcccCc--chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCce
Confidence 999 9999999998664 577788889999999999999999999999998888742 122222 566786
Q ss_pred CC----eEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 807 KL----VSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 807 ~~----V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
.. |.++.|+|.-.+|++++.||+|++|
T Consensus 702 ~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 702 KTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eecccceEeecccCCCceEEecCCCceEEee
Confidence 65 9999999999999999999999999
No 113
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=4.8e-24 Score=221.15 Aligned_cols=266 Identities=16% Similarity=0.245 Sum_probs=224.5
Q ss_pred eEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 003279 505 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 584 (834)
Q Consensus 505 ~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~ 584 (834)
.+++|+.|+.|++|+.... .++.++.+|.+.|..|+++. ..+++++.|++|+.|.++.
T Consensus 81 ~~aSGs~DG~VkiWnlsqR-------------------~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~- 138 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQR-------------------ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG- 138 (433)
T ss_pred hhhccccCceEEEEehhhh-------------------hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-
Confidence 4689999999999966443 34678899999999999987 5788999999999998776
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEE
Q 003279 585 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 664 (834)
Q Consensus 585 ~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~l 664 (834)
.++.++.+ ...+..|.-+..+..++||+.+ |.|||..... ++..+.-..+.|.++.|+|....+|++|+.|+.|.+
T Consensus 139 ~p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~-Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvL 214 (433)
T KOG0268|consen 139 PPLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDN-PVSSMSWGADSISSVKFNPVETSILASCASDRSIVL 214 (433)
T ss_pred Ccceeeec-cccccccccccccccccccCce--eeecccccCC-ccceeecCCCceeEEecCCCcchheeeeccCCceEE
Confidence 46666643 3457777777777889998765 9999998643 577777778899999999999999999999999999
Q ss_pred EECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CC
Q 003279 665 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE 742 (834)
Q Consensus 665 wDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~-~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg 742 (834)
||++.+.++..+...-..+.++|+|..-.|+++.+|..++.||++.. .++..+.+|.+.|.++.|+|.|.-+++|+ |.
T Consensus 215 yD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk 294 (433)
T KOG0268|consen 215 YDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK 294 (433)
T ss_pred EecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccc
Confidence 99999999999888888999999998778888999999999999975 67778889999999999999999999999 99
Q ss_pred eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 003279 743 LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 798 (834)
Q Consensus 743 ~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~ 798 (834)
+|+||.++.+......++- .-..|.++.|+-|..+|++|+.|+.|++|.....+
T Consensus 295 sIRIf~~~~~~SRdiYhtk--RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 295 SIRIFPVNHGHSRDIYHTK--RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred eEEEeecCCCcchhhhhHh--hhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 9999999877432222211 23468999999999999999999999999875543
No 114
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4e-22 Score=204.89 Aligned_cols=247 Identities=19% Similarity=0.273 Sum_probs=203.6
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEe-CCCcE
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEI 662 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs-~Dg~I 662 (834)
.+..+.+......|+++.|+++|.++++++.|.+|+|||..+++. ++++..+...|..++|......++.+.. .|.+|
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~-~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-VKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce-eeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 345556666788999999999999999999999999999998775 7777778788889999776565554332 38899
Q ss_pred EEEECCCCceeeEeecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-
Q 003279 663 RYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 740 (834)
Q Consensus 663 ~lwDl~s~~~i~~~~~~-~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs- 740 (834)
++.++.+.+.++.|..+ ..|..++.+|-+..+++++.|++|++||++..++...+.... -..++|+|.|-++|++.
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAAFDPEGLIFALANG 160 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC--CcceeECCCCcEEEEecC
Confidence 99999999999999864 569999999999999999999999999999888776665333 34579999999999998
Q ss_pred CCeEEEEEcCCCCCceeEEEee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCC---eEEEE
Q 003279 741 DELVRVWSIGSGSKGECIHELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKL---VSSLA 813 (834)
Q Consensus 741 Dg~I~IwDl~s~~~~~~i~~~~---~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~---V~~la 813 (834)
.+.|++||+++-.. .+...+. ......+.+.|+|+|++|+.++..+.+++.|.-+|.+. .+..+... -...+
T Consensus 161 ~~~IkLyD~Rs~dk-gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 161 SELIKLYDLRSFDK-GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred CCeEEEEEecccCC-CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence 44999999998643 2333333 34678899999999999999999999999999999877 44444332 25778
Q ss_pred EeCCCCEEEEEecCCcEEEeC
Q 003279 814 ASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 814 fspdg~~LaSgs~DG~I~IWd 834 (834)
|+||+++|++|+.||+|.+|+
T Consensus 240 ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 240 FTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred ECCCCcEEEEecCCCcEEEEE
Confidence 999999999999999999996
No 115
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=1e-22 Score=215.40 Aligned_cols=270 Identities=17% Similarity=0.205 Sum_probs=228.8
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
.++.+|+.|.++.+|+-... ..+.+|+||...|+.+.|+++...+++++.|..|+||....
T Consensus 232 ~~ilTGG~d~~av~~d~~s~-------------------q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~ 292 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSN-------------------QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL 292 (506)
T ss_pred CcceecCCCCceEEEecchh-------------------hhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc
Confidence 67789999989888844322 34678899999999999999999999999999999999988
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeec-cCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEI 662 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~-~h~~~V~sl~fspdg~~llasgs~Dg~I 662 (834)
......+..|.++|+.+..+|.|.||++++.|++..+.|+.++........ ...-.+++++|+|||- +|.+|..|+.|
T Consensus 293 ~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~v 371 (506)
T KOG0289|consen 293 SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGVV 371 (506)
T ss_pred ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccCCCceE
Confidence 888888889999999999999999999999999999999998775332222 2334589999999975 88899999999
Q ss_pred EEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC-CCCEEEEEEcCCCCEEEEEe
Q 003279 663 RYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS 740 (834)
Q Consensus 663 ~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h-~~~I~sl~~spdg~~Lasgs 740 (834)
+|||+.+...+..|.. .++|..+.|+.+|-++++++.|+.|++||++..+...++.-. ...|.+++|+..|.+|+.++
T Consensus 372 kiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 372 KIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG 451 (506)
T ss_pred EEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec
Confidence 9999999988888875 567999999999999999999999999999998777766542 33799999999999999986
Q ss_pred -CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 741 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 741 -Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
|=.|++++-.+. ...++..+..|.+..+.+.|.....++++++.|..++++.+
T Consensus 452 ~~l~Vy~~~k~~k-~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 452 SDLQVYICKKKTK-SWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeEEEEEecccc-cceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 546666664442 34677778888888999999999999999999999888764
No 116
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=1.1e-22 Score=224.80 Aligned_cols=244 Identities=21% Similarity=0.349 Sum_probs=213.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECC---CCCEEEEEeCCCeEEEEecCCC
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP---SLSRLATSSADRTVRVWDTENP 626 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fsp---dg~~Latgs~Dg~I~IWDl~s~ 626 (834)
+....|.|++.+|+|.+||+|..-|+++||++.+.+....++.|...|.|+.|+. ..++||+++.|.-|+|||+...
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn 536 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN 536 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence 4456799999999999999999999999999999999999999999999999986 3678999999999999999877
Q ss_pred CceeeeeccCCCCeEEEEEccCC-CcEEEEEeCCCcEEEEECCCCceeeEee------cCCCeeEEEEecCCCEEEEEEc
Q 003279 627 DYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQPRLGRILAAAI 699 (834)
Q Consensus 627 ~~~i~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~lwDl~s~~~i~~~~------~~~~i~~l~~sp~g~~ll~~s~ 699 (834)
-..+.++.+|...|+++.|.-.| +.-+++|+.|+.|.+--.........|. .+..++.+++.|..+++++++.
T Consensus 537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ 616 (1080)
T KOG1408|consen 537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ 616 (1080)
T ss_pred cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEec
Confidence 66788999999999999998765 3456689999887654433221112221 1455889999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEeC---CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003279 700 ENYISILDVETQVCRLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 775 (834)
Q Consensus 700 dg~I~iwDl~t~~~~~~l~~---h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafsp 775 (834)
|..|+|||+.+++.++.|++ |.+....+..+|.|.||++.. |.++.+||+.++ +|+....+|...|+.+.|.+
T Consensus 617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---EcvA~m~GHsE~VTG~kF~n 693 (1080)
T KOG1408|consen 617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---ECVAQMTGHSEAVTGVKFLN 693 (1080)
T ss_pred ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc---hhhhhhcCcchheeeeeecc
Confidence 99999999999999999986 667788899999999999877 999999999999 89999999999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCC
Q 003279 776 TFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 776 dg~~L~sgs~dg~I~Iwdl~~ 796 (834)
|.++|++++.||+|.||.+..
T Consensus 694 DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 694 DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cchhheeecCCceEEEEECch
Confidence 999999999999999999864
No 117
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=4.4e-23 Score=231.34 Aligned_cols=275 Identities=19% Similarity=0.361 Sum_probs=217.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----eEEEEecc---CCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCC
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEE---HTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN 625 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~----~~~~~l~~---h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~s 625 (834)
.+.+|...++-.-|++++. ..+.||.+... ++...++. -...+.+|.|.. +.++|||++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 3556777788888888875 46777766532 22222211 112456788875 467999999999999999986
Q ss_pred --CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecC-CCEEEEEEcCC
Q 003279 626 --PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPR-LGRILAAAIEN 701 (834)
Q Consensus 626 --~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~-g~~ll~~s~dg 701 (834)
....+..|..|...|.+++|++...++|++|+.||.|++||++..+...++.. ...|..+.|+|. +.+|+++...|
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG 199 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG 199 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence 23345678899999999999999999999999999999999999888887776 445999999995 56677777789
Q ss_pred eEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003279 702 YISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 779 (834)
Q Consensus 702 ~I~iwDl~t~-~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~ 779 (834)
.+.+||++.. ++...+..|.++|.|+.|+|++.+||+|+ |+.|+|||+.+... ..++++. ...++.++.|-|...+
T Consensus 200 ~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-~~~~tIn-Tiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 200 YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-KPKHTIN-TIAPVGRVKWRPARSY 277 (839)
T ss_pred eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-cceeEEe-ecceeeeeeeccCccc
Confidence 9999999976 67788889999999999999999999999 99999999987643 3333333 3678999999999876
Q ss_pred EEEEEc---CCeEEEEECCCCeEE--EeccCCCCeEEEEEeC-CCCEEEEEecCCcEE
Q 003279 780 LLVIGC---YETLELWNMTENKTL--TLSAHDKLVSSLAAST-VNGMVASASHDKCVK 831 (834)
Q Consensus 780 L~sgs~---dg~I~Iwdl~~~~~~--~l~~h~~~V~~lafsp-dg~~LaSgs~DG~I~ 831 (834)
.++.+. |-.|+|||++..-+- .+..|...++.++|.. |...|.+++.||+|.
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 554433 559999999876443 7789999999999976 345788999999864
No 118
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=2.4e-22 Score=214.74 Aligned_cols=253 Identities=19% Similarity=0.335 Sum_probs=205.6
Q ss_pred EEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC----------eEEEEeccCCCCeEEEEECCC-CCEEEE
Q 003279 544 EFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESF----------TVKSTLEEHTQWITDVRFSPS-LSRLAT 611 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~IWd~~t~----------~~~~~l~~h~~~I~~l~fspd-g~~Lat 611 (834)
++...-.|.+.|+.+.+-|.. .+||+++..+.|.|||..+. .+-.++.+|.+.-++++|++. .-.|++
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls 195 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLS 195 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEee
Confidence 344445799999999999954 57778888999999997642 222378899998889999985 457999
Q ss_pred EeCCCeEEEEecCCCCc------eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC--CceeeEee-cCCCe
Q 003279 612 SSADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--GSCAGVFK-CQSGA 682 (834)
Q Consensus 612 gs~Dg~I~IWDl~s~~~------~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s--~~~i~~~~-~~~~i 682 (834)
++.|++|++||+..... +...+.+|...|..++|++....+|++++.|+.+.|||+++ .++..... +..++
T Consensus 196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v 275 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV 275 (422)
T ss_pred ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCce
Confidence 99999999999975432 35678899999999999999999999999999999999995 44444443 46789
Q ss_pred eEEEEecCCCE-EEEEEcCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCC-----
Q 003279 683 TQMRFQPRLGR-ILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGS----- 753 (834)
Q Consensus 683 ~~l~~sp~g~~-ll~~s~dg~I~iwDl~t~-~~~~~l~~h~~~I~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~----- 753 (834)
.|++|+|-+.+ |++++.|++|.+||+++. .++.++.+|...|.+|.|+|... .|++++ |+.+.|||+..-.
T Consensus 276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ 355 (422)
T KOG0264|consen 276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP 355 (422)
T ss_pred eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence 99999996554 566677999999999986 67889999999999999999765 555555 9999999997532
Q ss_pred ------CceeEEEeecCCCceEEEEEeCCCCEE-EEEEcCCeEEEEECCC
Q 003279 754 ------KGECIHELSCTGNKFHSCVFHPTFPSL-LVIGCYETLELWNMTE 796 (834)
Q Consensus 754 ------~~~~i~~~~~~~~~I~svafspdg~~L-~sgs~dg~I~Iwdl~~ 796 (834)
..+.+....+|...|..+.|+|..+.+ ++++.|+.+.||.+..
T Consensus 356 eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 356 EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred hhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 234567778899999999999999865 5667788999999864
No 119
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.4e-21 Score=223.19 Aligned_cols=276 Identities=14% Similarity=0.228 Sum_probs=220.1
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC
Q 003279 549 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 627 (834)
Q Consensus 549 ~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~-~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~ 627 (834)
.+|+...+.|+|.|+|++|++++.||.|++|+.... +...++..+...|.+++.. +.+|++|+.+++|.+|.+.++.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 378999999999999999999999999999987665 4444555588888888875 4599999999999999998866
Q ss_pred ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 003279 628 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISIL 706 (834)
Q Consensus 628 ~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iw 706 (834)
. -..+...+-++.+++|+-+|. +++.|+.|-.|++.++.+......+. +..+|.++.|+|.+.+|++.+.||.|++|
T Consensus 88 ~-~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 88 E-DTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred c-cceeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 4 345555678899999999877 66688889999999999887777766 46789999999999999999999999999
Q ss_pred ECCCCeEEEEEeCC--------CCCEEEEEEcCCC-CEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003279 707 DVETQVCRLKLQGH--------KNQVHSVCWNTSG-EYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 777 (834)
Q Consensus 707 Dl~t~~~~~~l~~h--------~~~I~sl~~spdg-~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg 777 (834)
|+.++.+...+.+- ...+..++|+|+| .+++.+.|+.|++|+..+.+....+. ...+...+..+.|+|.|
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr-~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR-DKLSSSKFSDLQWSPNG 244 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec-ccccccceEEEEEcCCC
Confidence 99998877666531 3456778999995 45555559999999998874322222 22234449999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 778 PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 778 ~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
.||++++.+|.|.|||+++-+. ......|++++|.|+...|-.-..-|...+
T Consensus 245 ~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~ 296 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGTLGV 296 (933)
T ss_pred cEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeecccccc
Confidence 9999999999999999998322 334568999999999886655444444433
No 120
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.1e-22 Score=201.48 Aligned_cols=243 Identities=23% Similarity=0.396 Sum_probs=201.2
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC--ceeeeeccCCCCeEEEEEc-cCCCcEEEEEeCCCcEEEEEC
Q 003279 591 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSI 667 (834)
Q Consensus 591 ~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~--~~i~~~~~h~~~V~sl~fs-pdg~~llasgs~Dg~I~lwDl 667 (834)
..|.+.|.++.....|+.||||+.|++|+|+.+++.. ..+..+.+|.++|..++|. |.-..+|++|+.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 5799999999988889999999999999999998765 5678999999999999995 555669999999999999999
Q ss_pred CCCceeeEee---cCCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCC---eEEEEEeCCCCCEEEEEEcCC---C---
Q 003279 668 NNGSCAGVFK---CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTS---G--- 733 (834)
Q Consensus 668 ~s~~~i~~~~---~~~~i~~l~~sp~--g~~ll~~s~dg~I~iwDl~t~---~~~~~l~~h~~~I~sl~~spd---g--- 733 (834)
.++.-..... +...+++++|.|. |-.|++++.||.|.|++.+.. ........|.-.|++++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 9885444333 3667999999885 456888999999999988754 333445569999999999985 4
Q ss_pred --------CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC----CEEEEEEcCCeEEEEECCCC---
Q 003279 734 --------EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTEN--- 797 (834)
Q Consensus 734 --------~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg----~~L~sgs~dg~I~Iwdl~~~--- 797 (834)
+.|++++ |..|+||+..++ ....-..+..|...|..++|.|.- .+|++++.||+|.||.....
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 4688888 999999999886 223444588999999999999975 46999999999999976532
Q ss_pred -eEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 798 -KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 798 -~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+...+......+..+.||..|.+|+.++.|+.|.+|+
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 2224445678899999999999999999999999995
No 121
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=1.4e-21 Score=197.93 Aligned_cols=283 Identities=20% Similarity=0.333 Sum_probs=219.6
Q ss_pred EecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCe----------EEEE-----eccCCCCeEEEEECC-CCCEE
Q 003279 547 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT----------VKST-----LEEHTQWITDVRFSP-SLSRL 609 (834)
Q Consensus 547 ~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~IWd~~t~~----------~~~~-----l~~h~~~I~~l~fsp-dg~~L 609 (834)
..+.|.+.|+++.+.+ .|+|+++|+.||.|.|||++... .+.. -.+|...|.++.|.| |...+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3457899999999988 78999999999999999987532 1111 136888999999999 66788
Q ss_pred EEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCC--CcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEE
Q 003279 610 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK--EDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMR 686 (834)
Q Consensus 610 atgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg--~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~ 686 (834)
.+++.|.+++|||.++-.. ...|. ..+.|++-+++|-. ..++++|..|-.|++.|+.+|.+...+.. ..+|.++.
T Consensus 118 tssSFDhtlKVWDtnTlQ~-a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQE-AVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred ecccccceEEEeeccccee-eEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence 9999999999999998654 33333 56778888888743 56888888899999999999999998875 56799999
Q ss_pred EecCCCEE-EEEEcCCeEEEEECCCC-eEEEEE--------------eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEc
Q 003279 687 FQPRLGRI-LAAAIENYISILDVETQ-VCRLKL--------------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 749 (834)
Q Consensus 687 ~sp~g~~l-l~~s~dg~I~iwDl~t~-~~~~~l--------------~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl 749 (834)
|+|...++ ++|+.||.|++||++.- -+...+ ..|.+.|.+++|+.++.++++++ |..+++|+.
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 99988775 56677999999999864 333332 24778899999999999999988 999999999
Q ss_pred CCCCCceeEEEeecCCC----ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEE
Q 003279 750 GSGSKGECIHELSCTGN----KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 824 (834)
Q Consensus 750 ~s~~~~~~i~~~~~~~~----~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSg 824 (834)
.+++....-..-..+.. .+. +. +-+...++..-.++.+.++++-++..+ .+..|...|.|.++-|+-..+.++
T Consensus 276 ~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 276 ESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred ccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcc
Confidence 98854221111111111 111 22 334444555555689999999988877 677898999999999999999999
Q ss_pred ecCCcEEEe
Q 003279 825 SHDKCVKIW 833 (834)
Q Consensus 825 s~DG~I~IW 833 (834)
..|+.|..|
T Consensus 354 ~~d~ni~~w 362 (397)
T KOG4283|consen 354 DMNGNIYMW 362 (397)
T ss_pred ccCCccccc
Confidence 999999888
No 122
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3e-22 Score=214.18 Aligned_cols=228 Identities=23% Similarity=0.290 Sum_probs=201.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC------
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN------ 625 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s------ 625 (834)
.++|.|++-+|+|.+|+.|+..|.|++|.+.+|+.+..+..|-..|+|+.|+.|+.+|+|||.||.|.+|.+..
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 46799999999999999998999999999999999999999999999999999999999999999999998742
Q ss_pred --CCceeeeeccCCCCeEEEEEccCC-CcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCe
Q 003279 626 --PDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 702 (834)
Q Consensus 626 --~~~~i~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~ 702 (834)
...++..+..|.-+|+++...+.+ ...+++++.|.+|++||+..+..+..+..+..+.+++++|.+..+++|+.+|.
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~ 240 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGK 240 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcce
Confidence 224578899999999999887652 44677999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCC----------------eEEEEEeCCCC--CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec
Q 003279 703 ISILDVETQ----------------VCRLKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 763 (834)
Q Consensus 703 I~iwDl~t~----------------~~~~~l~~h~~--~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~ 763 (834)
|.+.++... ..+..+.+|.+ .|+|++++-||.+|++|+ ||.|.|||+.+. .+++++..
T Consensus 241 I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~---Q~iRtl~~ 317 (476)
T KOG0646|consen 241 IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK---QCIRTLQT 317 (476)
T ss_pred EEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH---HHHHHHhh
Confidence 999887532 34556778888 999999999999999999 999999999987 77777776
Q ss_pred CCCceEEEEEeCCCCEEEE
Q 003279 764 TGNKFHSCVFHPTFPSLLV 782 (834)
Q Consensus 764 ~~~~I~svafspdg~~L~s 782 (834)
..++|+.+.+.|-.+-++.
T Consensus 318 ~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 318 SKGPVTNLQINPLERGIIL 336 (476)
T ss_pred hccccceeEeeccccceec
Confidence 7888999988776544444
No 123
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=4.3e-22 Score=219.27 Aligned_cols=275 Identities=22% Similarity=0.320 Sum_probs=210.7
Q ss_pred EEEcC---CCCEEEEEeCCCcEEEEeCCCCeEE------EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc
Q 003279 558 CHFSP---DGKLLATGGHDKKAVLWCTESFTVK------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 628 (834)
Q Consensus 558 l~fSp---dg~~Lasgs~Dg~I~IWd~~t~~~~------~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~ 628 (834)
+.|++ ...+||.+.+||.|.++|....... .....|...|.++.|-|....|++++.|.++++||+...+.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 66665 3457999999999999998754333 44567999999999999778899999999999999998664
Q ss_pred eee--eeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCcee--------------------eEe--------ec
Q 003279 629 SLR--TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--------------------GVF--------KC 678 (834)
Q Consensus 629 ~i~--~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i--------------------~~~--------~~ 678 (834)
+. .+.+|.+.|.++||.|.+..+|++|+.||.|.|||++....- ... ..
T Consensus 135 -~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 135 -VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred -ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 43 488999999999999999999999999999999998753300 000 00
Q ss_pred CCCeeE---EEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEE--------eCC---CCCEEEEEEcCCCCEEEEEe-CC
Q 003279 679 QSGATQ---MRFQPRLGRILAAAI-ENYISILDVETQVCRLKL--------QGH---KNQVHSVCWNTSGEYLASVS-DE 742 (834)
Q Consensus 679 ~~~i~~---l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l--------~~h---~~~I~sl~~spdg~~Lasgs-Dg 742 (834)
...|.+ +.+..|...|++++. |+.|+|||+++....... ..| ...+.++..+..|.+|++.. |+
T Consensus 214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~ 293 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN 293 (720)
T ss_pred cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence 122333 556677788888887 999999999986544332 123 23577888888888776655 99
Q ss_pred eEEEEEcCCCCCceeEEEeecCCC--ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE--EeccCCCCeEEEEEeCCC
Q 003279 743 LVRVWSIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVN 818 (834)
Q Consensus 743 ~I~IwDl~s~~~~~~i~~~~~~~~--~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~--~l~~h~~~V~~lafspdg 818 (834)
.|++|++.+... .++..+.++.. ....-..+|++.+|++++.|...++|.+.+.+.- .+.+|.-.|++++|.|..
T Consensus 294 sIy~ynm~s~s~-sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~ 372 (720)
T KOG0321|consen 294 SIYFYNMRSLSI-SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA 372 (720)
T ss_pred cEEEEeccccCc-CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecccc
Confidence 999999987643 33444443322 2233467999999999999999999999886543 677999999999999854
Q ss_pred -CEEEEEecCCcEEEeC
Q 003279 819 -GMVASASHDKCVKIWK 834 (834)
Q Consensus 819 -~~LaSgs~DG~I~IWd 834 (834)
.-+|+|++|-.++||+
T Consensus 373 ~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 373 TTPVATCSDDFRVKIWR 389 (720)
T ss_pred CCCceeeccCcceEEEe
Confidence 3577889999999996
No 124
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=7.3e-22 Score=211.09 Aligned_cols=241 Identities=20% Similarity=0.325 Sum_probs=198.0
Q ss_pred cCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCCCc---------eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCc
Q 003279 592 EHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY---------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 661 (834)
Q Consensus 592 ~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~s~~~---------~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 661 (834)
.|.+.|+.+++-|. ..++++.+..+.|+|||..+-.. +-..+.+|...-++++|++.....+++++.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 59999999999995 56777888899999999875321 123678899888999999998888999999999
Q ss_pred EEEEECCCCce-------eeEee-cCCCeeEEEEecCC-CEEEEEEcCCeEEEEECC--CCeEEEEEeCCCCCEEEEEEc
Q 003279 662 IRYWSINNGSC-------AGVFK-CQSGATQMRFQPRL-GRILAAAIENYISILDVE--TQVCRLKLQGHKNQVHSVCWN 730 (834)
Q Consensus 662 I~lwDl~s~~~-------i~~~~-~~~~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~--t~~~~~~l~~h~~~I~sl~~s 730 (834)
|++||+..... ...+. +...|..++|++-. ..|.+++.|+.+.|||++ +.++.....+|...|.|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 99999975432 22333 35668999999954 456677788999999999 556777788899999999999
Q ss_pred CC-CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCC-e--------
Q 003279 731 TS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTEN-K-------- 798 (834)
Q Consensus 731 pd-g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg-~~L~sgs~dg~I~Iwdl~~~-~-------- 798 (834)
|- +.+||+++ |++|.+||+++-. .+++.+..|...|..+.|+|.. ..|++++.|+.+.|||+..- +
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~--~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~ 359 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLN--KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE 359 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcc--cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhc
Confidence 95 45677777 9999999999875 5899999999999999999976 45677888999999999541 1
Q ss_pred ------EEEeccCCCCeEEEEEeCCCC-EEEEEecCCcEEEeC
Q 003279 799 ------TLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 834 (834)
Q Consensus 799 ------~~~l~~h~~~V~~lafspdg~-~LaSgs~DG~I~IWd 834 (834)
.+.-.+|...|..+.|+|... .|++++.|+.+.||+
T Consensus 360 dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 360 DGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred cCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 124558999999999999887 677899999999996
No 125
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.89 E-value=1.1e-20 Score=202.95 Aligned_cols=302 Identities=18% Similarity=0.273 Sum_probs=230.3
Q ss_pred EEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 003279 506 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 585 (834)
Q Consensus 506 l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~ 585 (834)
+.+|..++++.+|.. +.. ...+...+|.+.|.+++.-.+|.+|- |+.|..|..||-. .+
T Consensus 260 viTgDS~G~i~Iw~~------------------~~~-~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~-y~ 318 (626)
T KOG2106|consen 260 VITGDSGGNILIWSK------------------GTN-RISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDN-YR 318 (626)
T ss_pred EEeecCCceEEEEeC------------------CCc-eEEeEeeecCCceEEEEEecCccEee-cCccceEEecccc-cc
Confidence 467777788888833 111 11223339999999999999996655 9999999999821 11
Q ss_pred EE-----------------------------------------EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC
Q 003279 586 VK-----------------------------------------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 586 ~~-----------------------------------------~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 624 (834)
.+ ....+|.+....++.+|+...++|++.|+.+++|+
T Consensus 319 k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-- 396 (626)
T KOG2106|consen 319 KLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-- 396 (626)
T ss_pred ccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--
Confidence 00 01136888889999999999999999999999999
Q ss_pred CCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEE
Q 003279 625 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 704 (834)
Q Consensus 625 s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~ 704 (834)
..+.... .....++.|++|+|.| .++.|...|...+.|+++...+........+.+++|+|+|.+|++++.|+.|+
T Consensus 397 ~~k~~wt--~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iy 472 (626)
T KOG2106|consen 397 DHKLEWT--KIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIY 472 (626)
T ss_pred CCceeEE--EEecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEE
Confidence 2232222 2345789999999998 77789999999999999988877777788899999999999999999999999
Q ss_pred EEECCCC-eEEEEE-eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEE-----------e----ecCCC
Q 003279 705 ILDVETQ-VCRLKL-QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE-----------L----SCTGN 766 (834)
Q Consensus 705 iwDl~t~-~~~~~l-~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~-----------~----~~~~~ 766 (834)
||-+... ...... +.+..+|+.+.|++|+++|.+-+ |-.|..|.-........+.. | ..+..
T Consensus 473 iy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t 552 (626)
T KOG2106|consen 473 IYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGT 552 (626)
T ss_pred EEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCc
Confidence 9998754 222222 22458999999999999999988 88999994433221111111 1 12344
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE----EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 767 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 767 ~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~----~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.|..++-+.+.+.++++...|+|++|...-..+. ...+|.+.|++++|.-+...|++.+.|..|..|+
T Consensus 553 ~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 553 DINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWR 624 (626)
T ss_pred hHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEE
Confidence 5666777778888999999999999987544333 6779999999999999888888888999999996
No 126
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=4.5e-21 Score=195.70 Aligned_cols=257 Identities=20% Similarity=0.321 Sum_probs=199.1
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC----CCeEEEEeccCCCCeEEEEECC--CCCEEEEEeCCCeEEEEe
Q 003279 549 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD 622 (834)
Q Consensus 549 ~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~----t~~~~~~l~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~IWD 622 (834)
.+|.+-|.|+.|.+.|+.+|+|+.|.+|+|||.. +..+....+.|.+.|..|.|.+ -|..+|+++.|++|.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4799999999999999999999999999999954 3566677889999999999976 489999999999999997
Q ss_pred cCCCC--------ceeeeeccCCCCeEEEEEccCC-CcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCE
Q 003279 623 TENPD--------YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 693 (834)
Q Consensus 623 l~s~~--------~~i~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ 693 (834)
-.... ....++....+.|++|.|.|.. ...+++++.||.|+||+.-.--.+.......++..+.. |
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~-p---- 164 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID-P---- 164 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC-C----
Confidence 63111 1235666778899999999864 34678899999999998765433322222111111110 1
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCC---CCEEEEEeCC------eEEEEEcCCCC-CceeEEEeec
Q 003279 694 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS---GEYLASVSDE------LVRVWSIGSGS-KGECIHELSC 763 (834)
Q Consensus 694 ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spd---g~~LasgsDg------~I~IwDl~s~~-~~~~i~~~~~ 763 (834)
...+..+..|+.|+|. ..+|++|+|. .++||...... +...+.++..
T Consensus 165 -----------------------p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 165 -----------------------PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred -----------------------cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 1125556778888874 4578888865 89999887654 4567778889
Q ss_pred CCCceEEEEEeCCC----CEEEEEEcCCeEEEEECCCCe--------------------EE-EeccCCCCeEEEEEeCCC
Q 003279 764 TGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTENK--------------------TL-TLSAHDKLVSSLAASTVN 818 (834)
Q Consensus 764 ~~~~I~svafspdg----~~L~sgs~dg~I~Iwdl~~~~--------------------~~-~l~~h~~~V~~lafspdg 818 (834)
+..+|+.++|.|+- ..|++++.|| |+||.++... .+ .+..|.+.|+.+.|.-.|
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG 300 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence 99999999999963 5688999999 9999987311 11 466899999999999999
Q ss_pred CEEEEEecCCcEEEeC
Q 003279 819 GMVASASHDKCVKIWK 834 (834)
Q Consensus 819 ~~LaSgs~DG~I~IWd 834 (834)
.+|++.++||+|++|+
T Consensus 301 tiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 301 TILSSTGDDGCVRLWK 316 (361)
T ss_pred eEEeecCCCceeeehh
Confidence 9999999999999996
No 127
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.89 E-value=8.1e-20 Score=196.49 Aligned_cols=289 Identities=12% Similarity=0.151 Sum_probs=231.0
Q ss_pred ccccCCCeeeeEEEEecCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEE
Q 003279 533 SAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 611 (834)
Q Consensus 533 ~~~~~~g~~~~~~~~l~gH~-~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Lat 611 (834)
.|....+..++....++.++ .-|.|++|.++|. +++|..+|.|.||+..+.+..+....|.+.|.+++...+|.+|-
T Consensus 226 Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS- 303 (626)
T KOG2106|consen 226 FWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS- 303 (626)
T ss_pred EEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-
Confidence 34455555556666676654 5699999999995 67999999999999988888877779999999999999987655
Q ss_pred EeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCC
Q 003279 612 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL 691 (834)
Q Consensus 612 gs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g 691 (834)
|+.|..|..||-.-.+.....+....+.|..++-. +.. |+.|...+.|..=.++++-.+..+.+......++.+|+.
T Consensus 304 GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~--~~d-i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~ 380 (626)
T KOG2106|consen 304 GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEG--KGD-ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK 380 (626)
T ss_pred cCccceEEeccccccccccccCchhcCCeeEEecC--CCc-EEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh
Confidence 99999999999443232233444556778777643 333 446777778888888888888888888899999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEE
Q 003279 692 GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS 770 (834)
Q Consensus 692 ~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~s 770 (834)
+.+++++.|+.+++|+ ..+.+.+.. ...++.|+.|+|.| .++.|. .|...|.|.++. ..+..... ..++++
T Consensus 381 ~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~---~lv~~~~d-~~~ls~ 452 (626)
T KOG2106|consen 381 NQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQ---DLVTIHTD-NEQLSV 452 (626)
T ss_pred hheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccc---eeEEEEec-CCceEE
Confidence 9999999999999999 444444443 45788999999999 888888 999999999885 44444444 889999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCeEE--Ee-ccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 771 CVFHPTFPSLLVIGCYETLELWNMTENKTL--TL-SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 771 vafspdg~~L~sgs~dg~I~Iwdl~~~~~~--~l-~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+.|+|+|.+|++++.|+.|+||-+..+... .. ..|..+|+.+.|++|+++|.+-+-|-.|-.|+
T Consensus 453 v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 453 VRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 999999999999999999999988654332 22 24458999999999999999999999999994
No 128
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.88 E-value=3.4e-20 Score=209.68 Aligned_cols=276 Identities=19% Similarity=0.298 Sum_probs=223.2
Q ss_pred CCeEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCcee
Q 003279 553 SKVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 630 (834)
Q Consensus 553 ~~V~sl~fSpd--g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i 630 (834)
+.|+++. +|. =+.|+.|+.+|.+.||++.+++.+.++.++...|+++.=+|--..++.|..+|+|.|+++..++. +
T Consensus 160 ~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dki-l 237 (910)
T KOG1539|consen 160 DFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKI-L 237 (910)
T ss_pred CceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcE-E
Confidence 3377763 553 24588999999999999999999999999999999999999888999999999999999998764 6
Q ss_pred eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee--cCCCeeEEEEecCCCEEEEEEcCCeEEEE--
Q 003279 631 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISIL-- 706 (834)
Q Consensus 631 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~--~~~~i~~l~~sp~g~~ll~~s~dg~I~iw-- 706 (834)
.++...-+.|+.++|..||..++++++..|.+.+||++..+.+.... +.+.+....|.+....+++++.|+.+++|
T Consensus 238 ~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vf 317 (910)
T KOG1539|consen 238 MSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVF 317 (910)
T ss_pred EEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEe
Confidence 77764469999999999999999999999999999999888777665 23566777777766667776666655444
Q ss_pred ECCCC---------------------------------------------------------------------------
Q 003279 707 DVETQ--------------------------------------------------------------------------- 711 (834)
Q Consensus 707 Dl~t~--------------------------------------------------------------------------- 711 (834)
|...+
T Consensus 318 D~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~ 397 (910)
T KOG1539|consen 318 DSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPP 397 (910)
T ss_pred eCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCc
Confidence 31111
Q ss_pred -----------------------------------eE-EEEEeCCC------CCEEEEEEcCCCCEEEEEe-CCeEEEEE
Q 003279 712 -----------------------------------VC-RLKLQGHK------NQVHSVCWNTSGEYLASVS-DELVRVWS 748 (834)
Q Consensus 712 -----------------------------------~~-~~~l~~h~------~~I~sl~~spdg~~Lasgs-Dg~I~IwD 748 (834)
.. .+.+ .+. ..+++++.+++|++.+.|. .|.|-+|+
T Consensus 398 i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L-~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fN 476 (910)
T KOG1539|consen 398 IVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVL-DPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFN 476 (910)
T ss_pred ceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEe-cCccccccCcceEEEEEeccCceEEEeccCCeEEEEE
Confidence 00 0000 011 3578899999999999988 89999999
Q ss_pred cCCCCCceeEEEe---ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-------------------------
Q 003279 749 IGSGSKGECIHEL---SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL------------------------- 800 (834)
Q Consensus 749 l~s~~~~~~i~~~---~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~------------------------- 800 (834)
+.++ .....+ ..|..+|+.++....++.+++++.+|.+++||.+++..+
T Consensus 477 mQSG---i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ 553 (910)
T KOG1539|consen 477 MQSG---IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL 553 (910)
T ss_pred cccC---eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc
Confidence 9998 444444 578999999999999999999999999999998765310
Q ss_pred -----------------EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 801 -----------------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 801 -----------------~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.+.+|.+.|++++|||||++|++++.|++|++||
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 2456899999999999999999999999999998
No 129
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.9e-21 Score=219.58 Aligned_cols=241 Identities=16% Similarity=0.251 Sum_probs=202.3
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC
Q 003279 591 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 670 (834)
Q Consensus 591 ~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~ 670 (834)
..|+...+.|+|.|+|++|++|+.||.|++|+.......-.++..+...|.+++...+ .|++|+.+++|.+|.+.++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc---ceEEeeccceEEEeeCCCC
Confidence 3688889999999999999999999999999987763334444447888988887633 6779999999999999887
Q ss_pred ceeeEe-ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEE
Q 003279 671 SCAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 748 (834)
Q Consensus 671 ~~i~~~-~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwD 748 (834)
..-..+ +..-++.+++|+.+|.++++|+.|-.|++.++.+......+.+|.++|.++.|+|.+++||+.+ ||.|+|||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 654332 2347899999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred cCCCCCceeEEEee----cC-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE---EeccCCCCeEEEEEeCCCCE
Q 003279 749 IGSGSKGECIHELS----CT-GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---TLSAHDKLVSSLAASTVNGM 820 (834)
Q Consensus 749 l~s~~~~~~i~~~~----~~-~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~---~l~~h~~~V~~lafspdg~~ 820 (834)
+.++.....+..+. .. ...+..++|+|++..+++.+.|+.|++|+..+++.. ....+...+.++.|+|.|+|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 99874322222111 11 345677899999999999999999999999998876 33345556999999999999
Q ss_pred EEEEecCCcEEEeC
Q 003279 821 VASASHDKCVKIWK 834 (834)
Q Consensus 821 LaSgs~DG~I~IWd 834 (834)
||+++.||.|.|||
T Consensus 247 iAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 247 IAASTLDGQILVWN 260 (933)
T ss_pred EeeeccCCcEEEEe
Confidence 99999999999997
No 130
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=5.7e-23 Score=228.69 Aligned_cols=253 Identities=21% Similarity=0.366 Sum_probs=223.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEE
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 643 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl 643 (834)
+.+++.+..+-.++|||... +..|...|.|+..-..++.+++|+.|..+-+|.+..... +..+.+|..+|.++
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~-i~S~~~hespIeSl 76 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA-ITSLTGHESPIESL 76 (825)
T ss_pred ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCch-hheeeccCCcceee
Confidence 34455566666778887553 346888889998877889999999999999999987654 66789999999999
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 003279 644 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN 722 (834)
Q Consensus 644 ~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~ 722 (834)
.|++. +.+|++|+.+|+|++||++..+.++++.+ ...+.++.|+|-+.+++.++.|..+.+||.+..-|.+.+.+|..
T Consensus 77 ~f~~~-E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 77 TFDTS-ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR 155 (825)
T ss_pred ecCcc-hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc
Confidence 99998 55888999999999999999998887765 56789999999999999999999999999999999999999999
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-
Q 003279 723 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL- 800 (834)
Q Consensus 723 ~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~- 800 (834)
.|.++.|+|+|++++.++ |.+++|||+..+ +.+.+|..|...+..+.|+|..-.++.|+.|++|++||+++-+.+
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag---k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~ 232 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAG---KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS 232 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeeccccc---ccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEee
Confidence 999999999999999999 799999999888 788999999999999999999999999999999999999988887
Q ss_pred EeccCCCCeEEEEEeCCCCEEEEEecC
Q 003279 801 TLSAHDKLVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 801 ~l~~h~~~V~~lafspdg~~LaSgs~D 827 (834)
........|.+++|+|+++.+++|..+
T Consensus 233 s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 233 SGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ccCCccCCceeeeecCCceeeecCchh
Confidence 455567889999999999998888654
No 131
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.88 E-value=5.3e-21 Score=204.92 Aligned_cols=273 Identities=17% Similarity=0.323 Sum_probs=220.5
Q ss_pred cCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003279 500 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 579 (834)
Q Consensus 500 ~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IW 579 (834)
....+.|.+|+. +.|++|+...... .+....+-++ ...+-|.+|.+.|||+.|++|++-.++.||
T Consensus 428 S~~trhVyTgGk-gcVKVWdis~pg~-------------k~PvsqLdcl-~rdnyiRSckL~pdgrtLivGGeastlsiW 492 (705)
T KOG0639|consen 428 SNPTRHVYTGGK-GCVKVWDISQPGN-------------KSPVSQLDCL-NRDNYIRSCKLLPDGRTLIVGGEASTLSIW 492 (705)
T ss_pred cCCcceeEecCC-CeEEEeeccCCCC-------------CCcccccccc-CcccceeeeEecCCCceEEeccccceeeee
Confidence 334456666655 6777885544311 1111111111 235679999999999999999999999999
Q ss_pred eCCCC--eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEe
Q 003279 580 CTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 657 (834)
Q Consensus 580 d~~t~--~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs 657 (834)
|+... +....+....-.+.+++.+||.+..++|+.||.|.|||+.+.. .++.+.+|.+.+.||.++++|.. |.+|+
T Consensus 493 DLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtDGascIdis~dGtk-lWTGG 570 (705)
T KOG0639|consen 493 DLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISKDGTK-LWTGG 570 (705)
T ss_pred eccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-eeecccCCCCCceeEEecCCCce-eecCC
Confidence 99754 3334454444567889999999999999999999999999754 58999999999999999999875 55999
Q ss_pred CCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEE
Q 003279 658 NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 737 (834)
Q Consensus 658 ~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~La 737 (834)
-|.+|+.||++.+..+......+.|.++.++|.+.++++|-.++.+.|....... .+.+.-|...|.++.|.+.|++++
T Consensus 571 lDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 571 LDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred CccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCcc-ceeecccccEEEEEEecccCceee
Confidence 9999999999999988888888999999999999999999999999998876543 445556999999999999999999
Q ss_pred EEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 738 SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 738 sgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
+.+ |+.+..|...-+ ..+.... ....|.+|.++-|.++|++|+.|....||.+
T Consensus 650 StGkDnlLnawrtPyG---asiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 650 STGKDNLLNAWRTPYG---ASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ecCchhhhhhccCccc---cceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 988 999999998877 4444433 3678999999999999999999998888864
No 132
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=6.5e-23 Score=228.27 Aligned_cols=238 Identities=26% Similarity=0.409 Sum_probs=215.4
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC
Q 003279 545 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 624 (834)
.+.+..|...|.|+..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.||.|+++..+|++|+.+|+|++||++
T Consensus 21 ~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 21 TREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred chhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence 45566899999999987788999999999999999999888888899999999999999999999999999999999999
Q ss_pred CCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeE
Q 003279 625 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYI 703 (834)
Q Consensus 625 s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I 703 (834)
..+ .++++.+|...+.++.|+|-+. ++++++.|+.+++||++...|...+.. ...+.++.|+|+|++++.++.|..+
T Consensus 101 eAk-~vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tv 178 (825)
T KOG0267|consen 101 EAK-IVRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTV 178 (825)
T ss_pred hhh-hhhhhhccccCcceeeeccceE-EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCccee
Confidence 765 4889999999999999999977 558999999999999998888888875 4457889999999999999999999
Q ss_pred EEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003279 704 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 782 (834)
Q Consensus 704 ~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~s 782 (834)
+|||+..|+....|..|...+.++.|+|..-+++.|+ |++|++||+++. ..+.........|.+..|+|++..+++
T Consensus 179 ki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf---e~I~s~~~~~~~v~~~~fn~~~~~~~~ 255 (825)
T KOG0267|consen 179 KIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF---EVISSGKPETDGVRSLAFNPDGKIVLS 255 (825)
T ss_pred eeecccccccccccccccccccccccCchhhhhccCCCCceeeeecccee---EEeeccCCccCCceeeeecCCceeeec
Confidence 9999999999999999999999999999999999999 999999999876 667777777888999999999998777
Q ss_pred EEcCC
Q 003279 783 IGCYE 787 (834)
Q Consensus 783 gs~dg 787 (834)
|....
T Consensus 256 G~q~s 260 (825)
T KOG0267|consen 256 GEQIS 260 (825)
T ss_pred Cchhh
Confidence 76543
No 133
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=5.3e-21 Score=204.10 Aligned_cols=269 Identities=15% Similarity=0.224 Sum_probs=219.1
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTE 582 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~IWd~~ 582 (834)
.++.+++.|+++++|-.... .-..++.+.--..+|.+++|.|+|. .+++++....++.||+.
T Consensus 226 plllvaG~d~~lrifqvDGk-----------------~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 226 PLLLVAGLDGTLRIFQVDGK-----------------VNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred ceEEEecCCCcEEEEEecCc-----------------cChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecc
Confidence 78899999999999955332 1223555556677899999999999 89999999999999999
Q ss_pred CCeEEE--EeccCC-CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC
Q 003279 583 SFTVKS--TLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 659 (834)
Q Consensus 583 t~~~~~--~l~~h~-~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D 659 (834)
+.+... .+.++. ..+.....++++.+|+..+..|.|.|....++.. +..+. -.+.|..++|+.+++.++++| .+
T Consensus 289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el-i~s~K-ieG~v~~~~fsSdsk~l~~~~-~~ 365 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL-ITSFK-IEGVVSDFTFSSDSKELLASG-GT 365 (514)
T ss_pred ccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh-hheee-eccEEeeEEEecCCcEEEEEc-CC
Confidence 876653 333443 4677889999999999999999999999988664 44444 467899999999987666555 58
Q ss_pred CcEEEEECCCCceeeEeecCCCe--eEEEEecCCCEEEEEEcCCeEEEEECCC------CeEEEEEeCCCCCEEEEEEcC
Q 003279 660 SEIRYWSINNGSCAGVFKCQSGA--TQMRFQPRLGRILAAAIENYISILDVET------QVCRLKLQGHKNQVHSVCWNT 731 (834)
Q Consensus 660 g~I~lwDl~s~~~i~~~~~~~~i--~~l~~sp~g~~ll~~s~dg~I~iwDl~t------~~~~~~l~~h~~~I~sl~~sp 731 (834)
|.|++||++...++..+...+.+ +++|.++++.+|++|+..|.|.|||.++ .+++..+..-...|+++.|++
T Consensus 366 GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~ 445 (514)
T KOG2055|consen 366 GEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH 445 (514)
T ss_pred ceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc
Confidence 89999999999999999876665 5677779999999999999999999764 366777776778899999999
Q ss_pred CCCEEEEEe---CCeEEEEEcCCCCCceeEEEeec---CCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003279 732 SGEYLASVS---DELVRVWSIGSGSKGECIHELSC---TGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 732 dg~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~---~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
|..+|+.++ ++.+++-.+.+. .....+.. .-+.++|++|+|.+.++++|..+|.|.+|.+.
T Consensus 446 d~qiLAiaS~~~knalrLVHvPS~---TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 446 DAQILAIASRVKKNALRLVHVPSC---TVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred chhhhhhhhhccccceEEEeccce---eeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 999999988 668999998876 33333333 34668999999999999999999999999874
No 134
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=3.2e-20 Score=190.04 Aligned_cols=253 Identities=15% Similarity=0.244 Sum_probs=199.9
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
..+..++.|+.++++..... +....-.|..+|.+|+|.++ ..+++|+-||.|+++|+.+
T Consensus 26 ~~LLvssWDgslrlYdv~~~--------------------~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 26 SDLLVSSWDGSLRLYDVPAN--------------------SLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNT 84 (323)
T ss_pred CcEEEEeccCcEEEEeccch--------------------hhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecC
Confidence 56677889999999955433 12223368899999999974 4788999999999999998
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 663 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 663 (834)
+... .+..|..+|.||.+++....+++||+|++|++||.+... ....+. ....|.++.... ..|++|..|..|.
T Consensus 85 ~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~-~~~~~d-~~kkVy~~~v~g---~~LvVg~~~r~v~ 158 (323)
T KOG1036|consen 85 GNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV-VVGTFD-QGKKVYCMDVSG---NRLVVGTSDRKVL 158 (323)
T ss_pred Ccce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-cccccc-cCceEEEEeccC---CEEEEeecCceEE
Confidence 7655 556799999999999988899999999999999998632 233333 344899998873 3566777899999
Q ss_pred EEECCCCceeeE---eecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC----eEEEEEeCCCC---------CEEEE
Q 003279 664 YWSINNGSCAGV---FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ----VCRLKLQGHKN---------QVHSV 727 (834)
Q Consensus 664 lwDl~s~~~i~~---~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~----~~~~~l~~h~~---------~I~sl 727 (834)
+||+++...... -...-.+.|+++.|++.-+++++.||.|.+=.++.. .....|+.|.. +|++|
T Consensus 159 iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai 238 (323)
T KOG1036|consen 159 IYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAI 238 (323)
T ss_pred EEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEecee
Confidence 999998665442 223456899999999889999999999888766654 44455555542 78999
Q ss_pred EEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003279 728 CWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 786 (834)
Q Consensus 728 ~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d 786 (834)
+|+|-...|++|+ ||.|.+||+.+. +.+..+..-...|.+++|+.+|..||++++.
T Consensus 239 ~Fhp~~~tfaTgGsDG~V~~Wd~~~r---Krl~q~~~~~~SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 239 AFHPIHGTFATGGSDGIVNIWDLFNR---KRLKQLAKYETSISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred EeccccceEEecCCCceEEEccCcch---hhhhhccCCCCceEEEEeccCCCeEEEEech
Confidence 9999988899988 999999999887 5555665557789999999999999998763
No 135
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.1e-19 Score=201.98 Aligned_cols=280 Identities=17% Similarity=0.227 Sum_probs=230.0
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEEEeccC-CCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 003279 544 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVW 621 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~-~~~~l~~h-~~~I~~l~fspdg~~Latgs~Dg~I~IW 621 (834)
..+.+.--...|.|++|+.+.+.||.+-.||.|.||++...= ....+.++ ...|.+++|+ ++..|++.+.+|.|.-|
T Consensus 17 rcrf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~Ew 95 (691)
T KOG2048|consen 17 RCRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEW 95 (691)
T ss_pred EEEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEE
Confidence 345555667789999999999999999999999999998643 33455554 4579999999 55678889999999999
Q ss_pred ecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec---CCCeeEEEEecCCCEEEEEE
Q 003279 622 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAA 698 (834)
Q Consensus 622 Dl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~---~~~i~~l~~sp~g~~ll~~s 698 (834)
|+.+.+. ...+....+.|++++.+|.+. .++.|++||.+++++...++....... .+.+.++.|+|++..++.|+
T Consensus 96 Dl~~lk~-~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs 173 (691)
T KOG2048|consen 96 DLHTLKQ-KYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGS 173 (691)
T ss_pred ecccCce-eEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecc
Confidence 9998664 666777789999999999976 566777899999999988877665543 47799999999999999999
Q ss_pred cCCeEEEEECCCCeEEEEEe-------C-CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003279 699 IENYISILDVETQVCRLKLQ-------G-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 769 (834)
Q Consensus 699 ~dg~I~iwDl~t~~~~~~l~-------~-h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 769 (834)
.||.|++||+.++..+.... . ...-|.++.|-.++. |++|. .|+|.+||...+ ..+..+..|...|.
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~g---TLiqS~~~h~adVl 249 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFG---TLIQSHSCHDADVL 249 (691)
T ss_pred cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCceEEEEcccCc---chhhhhhhhhccee
Confidence 99999999999987666222 1 233567888876665 45555 999999999988 78888999999999
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeE--E---EeccCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 770 SCVFHPTFPSLLVIGCYETLELWNMTENKT--L---TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 770 svafspdg~~L~sgs~dg~I~Iwdl~~~~~--~---~l~~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
+++..+++.++++++-|+.|..|...+++. + ....|...|.+++..++ .|++|+.|..+.|
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 999999999999999999999888777643 2 45578899999999876 8999999998865
No 136
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=2.6e-20 Score=206.97 Aligned_cols=357 Identities=17% Similarity=0.227 Sum_probs=254.4
Q ss_pred cccCCCCCceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCe-EEeecCCCC---CCCcccccccccCCCeeeeEEE
Q 003279 471 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNV-ESFLSPDDA---DPRDRVGRSAEVGKGFTFTEFQ 546 (834)
Q Consensus 471 ~~~~~s~~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v-~~~~s~~~~---~~~~~~~~~~~~~~g~~~~~~~ 546 (834)
...+.+.++++|.|.++...+......++..+. |+.-+-. .+|...... .++..-.++|...+...+....
T Consensus 281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g-----g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~ 355 (764)
T KOG1063|consen 281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVG-----GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEP 355 (764)
T ss_pred hheecccCcceEEEecCCccceEEEEEEeeccc-----ccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecc
Confidence 344567789999999998755555444433332 1111111 112111110 1111222444433344455667
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC----CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 547 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 547 ~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~----t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
.+.||.+.|..++|+|.|++|++++.|-+-+||-.- +.-.+..-.-|...++|++|-+....+++|...+.+|+|+
T Consensus 356 ~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~ 435 (764)
T KOG1063|consen 356 VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFE 435 (764)
T ss_pred ccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeec
Confidence 788999999999999999999999999999998643 1223334456888999999998767888998899999997
Q ss_pred cCC-------------------------------------------CC--------------------------------
Q 003279 623 TEN-------------------------------------------PD-------------------------------- 627 (834)
Q Consensus 623 l~s-------------------------------------------~~-------------------------------- 627 (834)
... +.
T Consensus 436 aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLw 515 (764)
T KOG1063|consen 436 APKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLW 515 (764)
T ss_pred CcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccc
Confidence 540 00
Q ss_pred ceeeeeccCCCCeEEEEEccCCCcEEEEEeCC-----CcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCC
Q 003279 628 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIEN 701 (834)
Q Consensus 628 ~~i~~~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg 701 (834)
..+..+.+|...|++++.+|+++ +++++... ..|++|+..+...+..+.. .-.|+.++|+|++++|++++.|.
T Consensus 516 PEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR 594 (764)
T KOG1063|consen 516 PEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDR 594 (764)
T ss_pred hhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCc
Confidence 01234567999999999999976 77777543 3799999998887776654 45699999999999999999999
Q ss_pred eEEEEECCCCe----EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEE--EeecCCCceEEEEEe
Q 003279 702 YISILDVETQV----CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH--ELSCTGNKFHSCVFH 774 (834)
Q Consensus 702 ~I~iwDl~t~~----~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~--~~~~~~~~I~svafs 774 (834)
++.+|...... .....+.|...|.++.|+|++.++++++ |.+|+||....... ..+. ....+...|+.++|.
T Consensus 595 t~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d-~~i~~~a~~~~~~aVTAv~~~ 673 (764)
T KOG1063|consen 595 TVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRD-KYISRFACLKFSLAVTAVAYL 673 (764)
T ss_pred eEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchh-hhhhhhchhccCCceeeEEee
Confidence 99999875431 1223667999999999999999999999 99999999887632 2222 233467789999887
Q ss_pred CC-----CCEEEEEEcCCeEEEEECC------C-CeEE------EeccCCCCeEEEEEeCCC----------CEEEEEec
Q 003279 775 PT-----FPSLLVIGCYETLELWNMT------E-NKTL------TLSAHDKLVSSLAASTVN----------GMVASASH 826 (834)
Q Consensus 775 pd-----g~~L~sgs~dg~I~Iwdl~------~-~~~~------~l~~h~~~V~~lafspdg----------~~LaSgs~ 826 (834)
|- +..+++|-..|.|.+|..+ + +... ...+|...|+.+.|.|.. ..|++|++
T Consensus 674 ~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~ 753 (764)
T KOG1063|consen 674 PVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGD 753 (764)
T ss_pred ccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecc
Confidence 63 2367788889999999865 1 1110 234678889999999752 26799999
Q ss_pred CCcEEEeC
Q 003279 827 DKCVKIWK 834 (834)
Q Consensus 827 DG~I~IWd 834 (834)
|..++|++
T Consensus 754 D~~vri~n 761 (764)
T KOG1063|consen 754 DESVRIFN 761 (764)
T ss_pred cceeEEee
Confidence 99999985
No 137
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.9e-19 Score=198.74 Aligned_cols=230 Identities=14% Similarity=0.209 Sum_probs=186.1
Q ss_pred CCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCC-CCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003279 501 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS-TSKVESCHFSPDGKLLATGGHDKKAVLW 579 (834)
Q Consensus 501 ~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH-~~~V~sl~fSpdg~~Lasgs~Dg~I~IW 579 (834)
..++.+|.+-.|++|++|..... +-...++.+| +..|.+++|++ +..|++.+.+|.|.-|
T Consensus 35 ~kS~~lAvsRt~g~IEiwN~~~~------------------w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~Ew 95 (691)
T KOG2048|consen 35 HKSNQLAVSRTDGNIEIWNLSNN------------------WFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEW 95 (691)
T ss_pred ccCCceeeeccCCcEEEEccCCC------------------ceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEE
Confidence 34466999999999999965442 1223445554 46799999995 5578888889999999
Q ss_pred eCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCcee-eeeccCCCCeEEEEEccCCCcEEEEEeC
Q 003279 580 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDN 658 (834)
Q Consensus 580 d~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i-~~~~~h~~~V~sl~fspdg~~llasgs~ 658 (834)
|+.+++.+..+....+.|++++.+|.++.++.|+.||.++.++...+.... +.+....+.|.+++|+|++.. +++|+.
T Consensus 96 Dl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~-i~~Gs~ 174 (691)
T KOG2048|consen 96 DLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK-IAGGSI 174 (691)
T ss_pred ecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE-EEeccc
Confidence 999999999999999999999999999999999999988888887655433 334445689999999999764 558999
Q ss_pred CCcEEEEECCCCceeeEee-----cCC----CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEE
Q 003279 659 NSEIRYWSINNGSCAGVFK-----CQS----GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCW 729 (834)
Q Consensus 659 Dg~I~lwDl~s~~~i~~~~-----~~~----~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~ 729 (834)
||.|++||..++..+.... ... -|.++.|.. ...|++|.+.|.|.+||...+..+..+..|...|.+++.
T Consensus 175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav 253 (691)
T KOG2048|consen 175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAV 253 (691)
T ss_pred CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEE
Confidence 9999999999988777332 122 256666664 478999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEe-CCeEEEEEcCC
Q 003279 730 NTSGEYLASVS-DELVRVWSIGS 751 (834)
Q Consensus 730 spdg~~Lasgs-Dg~I~IwDl~s 751 (834)
.+++.++++++ |+.|.-|...+
T Consensus 254 ~~~~d~vfsaGvd~~ii~~~~~~ 276 (691)
T KOG2048|consen 254 ADNEDRVFSAGVDPKIIQYSLTT 276 (691)
T ss_pred cCCCCeEEEccCCCceEEEEecC
Confidence 99988888888 98877776543
No 138
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=8.4e-21 Score=193.53 Aligned_cols=258 Identities=20% Similarity=0.303 Sum_probs=215.1
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEE
Q 003279 566 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 645 (834)
Q Consensus 566 ~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~f 645 (834)
.|++.-.++++. ...++.+.+|.+.|+.++.......+.+++.|.+.+||.++++.+ +..+.+|.+.|++|.|
T Consensus 126 rivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C-L~~Y~GH~GSVNsikf 198 (481)
T KOG0300|consen 126 RIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC-LATYTGHTGSVNSIKF 198 (481)
T ss_pred hheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccc-eeeecccccceeeEEe
Confidence 345555555532 245677889999999999988888999999999999999999774 8899999999999999
Q ss_pred ccCCCcEEEEEeCCCcEEEEEC------CCC--------c--------------------------eeeEee-cCCCeeE
Q 003279 646 HPSKEDLLCSCDNNSEIRYWSI------NNG--------S--------------------------CAGVFK-CQSGATQ 684 (834)
Q Consensus 646 spdg~~llasgs~Dg~I~lwDl------~s~--------~--------------------------~i~~~~-~~~~i~~ 684 (834)
++.+. ++++++.|++-.||.. ... + ++..+. +...|.+
T Consensus 199 h~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 199 HNSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred ccccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 99865 7779999999999962 110 0 111122 2334667
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec
Q 003279 685 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 763 (834)
Q Consensus 685 l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~ 763 (834)
..|...+..+++++.|.+-.+||+++++.+..+.+|....+.++-+|.-+++++++ |.+.++||++.. ...+..|.+
T Consensus 278 ~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea--I~sV~VFQG 355 (481)
T KOG0300|consen 278 CDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA--IQSVAVFQG 355 (481)
T ss_pred hhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh--cceeeeecc
Confidence 77888899999999999999999999999999999999999999999999999999 999999999843 467888999
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe-EEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 764 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 764 ~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~-~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
|...|+++.|..+.+ +++++.|.+|+|||+++-+ ++.....+.+++.++.+..+.+|+.--++..|+|||
T Consensus 356 HtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 356 HTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEe
Confidence 999999999998876 8899999999999998754 445556778899999998888888888888899987
No 139
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.6e-20 Score=199.50 Aligned_cols=258 Identities=13% Similarity=0.185 Sum_probs=204.1
Q ss_pred EeCC-CcEEEEeCCCCeEEEEeccC-CCCeEEEEECCCCCEEEEEeC-CCeEEEEecCCCCceeeeeccCCCCeEEEEEc
Q 003279 570 GGHD-KKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 646 (834)
Q Consensus 570 gs~D-g~I~IWd~~t~~~~~~l~~h-~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fs 646 (834)
++.| .++.+||+.+|.....+++. ...-.++..- .+.+++++.. ...|.+|.+....... .+.--.++|.+++-+
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALASS 90 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhh-hhcccccceeeeecC
Confidence 3444 45999999999999888765 2211222221 2356666654 4579999998655423 334456889999999
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECC---------CCeEEEE
Q 003279 647 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVE---------TQVCRLK 716 (834)
Q Consensus 647 pdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~---------t~~~~~~ 716 (834)
|+|. +++.|+..|.|++|.+.+|..+..+.. -..|+|+.|+.|+.+|++++.||.|.+|++. +-++...
T Consensus 91 n~G~-~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~ 169 (476)
T KOG0646|consen 91 NLGY-FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHI 169 (476)
T ss_pred CCce-EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceee
Confidence 9976 555666899999999999999888764 4569999999999999999999999999764 2467888
Q ss_pred EeCCCCCEEEEEEcCC--CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003279 717 LQGHKNQVHSVCWNTS--GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 793 (834)
Q Consensus 717 l~~h~~~I~sl~~spd--g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwd 793 (834)
+..|.-+|+++...+. ..+|++++ |.++++||+..+ ..+..+. ....+.+++.+|-+..+++|+.+|.|.+.+
T Consensus 170 f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 170 FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG---VLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc---eeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeee
Confidence 9999999999988765 45788888 999999999998 4555444 367899999999999999999999999988
Q ss_pred CCCCe-----------------EEEeccCCC--CeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 794 MTENK-----------------TLTLSAHDK--LVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 794 l~~~~-----------------~~~l~~h~~--~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+.... ...+.+|.+ .|+|++++-||.+|++|+.||.|+|||
T Consensus 246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 74432 125678888 999999999999999999999999997
No 140
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=3.2e-20 Score=190.90 Aligned_cols=285 Identities=19% Similarity=0.331 Sum_probs=220.7
Q ss_pred EEecCCCCCeEEEEEcC-----CCCEEEEEeCCCcEEEEeCCCCe---EEEEe--ccCCCCeEEEEECCC----CCEEEE
Q 003279 546 QLIPASTSKVESCHFSP-----DGKLLATGGHDKKAVLWCTESFT---VKSTL--EEHTQWITDVRFSPS----LSRLAT 611 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSp-----dg~~Lasgs~Dg~I~IWd~~t~~---~~~~l--~~h~~~I~~l~fspd----g~~Lat 611 (834)
.....|+.+|..++|++ +...+|+++. ..+.+|.....- .+..+ ..|......++|+-+ ..++|.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 34568999999999985 2335666664 578888765432 33333 247788888999765 347899
Q ss_pred EeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec----CCCeeEEEE
Q 003279 612 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGATQMRF 687 (834)
Q Consensus 612 gs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~----~~~i~~l~~ 687 (834)
++.-|.|+|.|+.+... ...+.+|...|+.|.|+|+...++++++.|..|++|++.+..|+..|.. ...|.++.|
T Consensus 111 ~G~~GvIrVid~~~~~~-~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQC-SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred ecceeEEEEEecchhhh-ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 99999999999998664 7888999999999999999999999999999999999999999999874 567999999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCe------EEE----------------------EEeCCCCCEEEEEEcCCCCEEEEE
Q 003279 688 QPRLGRILAAAIENYISILDVETQV------CRL----------------------KLQGHKNQVHSVCWNTSGEYLASV 739 (834)
Q Consensus 688 sp~g~~ll~~s~dg~I~iwDl~t~~------~~~----------------------~l~~h~~~I~sl~~spdg~~Lasg 739 (834)
+.++.+|++++.|..|.+|++...+ +.. +-..|...|-|+.|- |.++++-
T Consensus 190 ~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSk 267 (385)
T KOG1034|consen 190 SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSK 267 (385)
T ss_pred cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeec
Confidence 9999999999999999999998421 110 112355666666665 5788887
Q ss_pred e-CCeEEEEEcCCC-----------CCceeEEEeecCCCceEEE--EEeCCCCEEEEEEcCCeEEEEECCCCeEE---Ee
Q 003279 740 S-DELVRVWSIGSG-----------SKGECIHELSCTGNKFHSC--VFHPTFPSLLVIGCYETLELWNMTENKTL---TL 802 (834)
Q Consensus 740 s-Dg~I~IwDl~s~-----------~~~~~i~~~~~~~~~I~sv--afspdg~~L~sgs~dg~I~Iwdl~~~~~~---~l 802 (834)
+ ++.|..|....- .....+.++.-....|+-+ +|.+-.+.|+.|...|.|++||++..++. ++
T Consensus 268 scenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl 347 (385)
T KOG1034|consen 268 SCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL 347 (385)
T ss_pred ccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceE
Confidence 7 999999987211 1122344454445555554 56777899999999999999999887763 22
Q ss_pred c--cCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 803 S--AHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 803 ~--~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
. .....|...+|+.|+.+|+..++|++|.-||
T Consensus 348 ~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 348 THSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred EeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 2 3356799999999999999999999999886
No 141
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=3e-20 Score=194.04 Aligned_cols=243 Identities=18% Similarity=0.359 Sum_probs=190.1
Q ss_pred cCCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEeCC----------------CCeEEEEeccCCCCeEEEEECCC-CCEE
Q 003279 549 PASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTE----------------SFTVKSTLEEHTQWITDVRFSPS-LSRL 609 (834)
Q Consensus 549 ~gH~~~V~sl~fSpdg--~~Lasgs~Dg~I~IWd~~----------------t~~~~~~l~~h~~~I~~l~fspd-g~~L 609 (834)
.+|.+.|..+.-++-+ .+.|+-+..|.|.||++. ..+++.++.+|...=+.|+|+|- ...|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 3677778887777644 466777789999999864 24667888999999999999993 3358
Q ss_pred EEEeCCCeEEEEecCCCCcee--eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC---ceeeEeecCCCeeE
Q 003279 610 ATSSADRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFKCQSGATQ 684 (834)
Q Consensus 610 atgs~Dg~I~IWDl~s~~~~i--~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~---~~i~~~~~~~~i~~ 684 (834)
++|..-+.|++|...++.+.+ ..+.+|+..|..|+|+|..+.+|++|+.||+|+|||++.+ .++.+-.+.+.|+.
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV 307 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV 307 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence 888888999999999877644 5677899999999999999999999999999999999988 56666667889999
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCC---CeEEEEEeCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCc----
Q 003279 685 MRFQPRLGRILAAAIENYISILDVET---QVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKG---- 755 (834)
Q Consensus 685 l~~sp~g~~ll~~s~dg~I~iwDl~t---~~~~~~l~~h~~~I~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~---- 755 (834)
|.|+.+...|++|+.||+++|||++. +.++..|+-|..+|++|.|+|.. ..|++++ |..|.|||+.-....
T Consensus 308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~ 387 (440)
T KOG0302|consen 308 ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEID 387 (440)
T ss_pred EEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhc
Confidence 99999988899999999999999985 57888999999999999999954 3444444 999999999753210
Q ss_pred -----------eeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEE
Q 003279 756 -----------ECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELW 792 (834)
Q Consensus 756 -----------~~i~~~~~~~~~I~svafspdg~-~L~sgs~dg~I~Iw 792 (834)
..+..+.-....+..+.|++.-+ +|++.+.|| +.||
T Consensus 388 ~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 388 QEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred cccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 01111222345677888988765 455555565 4444
No 142
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=4.4e-20 Score=197.87 Aligned_cols=258 Identities=18% Similarity=0.232 Sum_probs=201.1
Q ss_pred eEEEEEcCCCC-EEEEEeCCCcEEEEeCCC--CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceee
Q 003279 555 VESCHFSPDGK-LLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 631 (834)
Q Consensus 555 V~sl~fSpdg~-~Lasgs~Dg~I~IWd~~t--~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~ 631 (834)
|.+++|+.... .+++.+.|..|++|.-.. ++....-+.....-.|++......|+++|+..+.|+|||+.. +.+.+
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-kl~hr 115 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRA-KLIHR 115 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHH-HHHhh
Confidence 89999998663 234456788999996332 222211111222344555555568999999999999999994 56689
Q ss_pred eeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCC--CeeEEEEecCCCEEE-EEEcCCeEEEEEC
Q 003279 632 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLGRIL-AAAIENYISILDV 708 (834)
Q Consensus 632 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~--~i~~l~~sp~g~~ll-~~s~dg~I~iwDl 708 (834)
.+.+|...|+++.+..... +|++++..|.|.|..+.++.....|.+.. .+.-+.|++..+.++ +++.+|.|.+||+
T Consensus 116 ~lkdh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv 194 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV 194 (673)
T ss_pred hccCCcceeEEEEecCCcc-eeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence 9999999999999987754 77899999999999999998888888753 366899999877655 5566799999999
Q ss_pred CCCeEEEEE-eCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003279 709 ETQVCRLKL-QGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 785 (834)
Q Consensus 709 ~t~~~~~~l-~~h~~~I~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~ 785 (834)
....++..+ +.|..+...|||+|... +|++.+ |..|++||+++.....++. -..+...++|.++|.+|++|..
T Consensus 195 ~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~----y~~Plstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 195 QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT----YSHPLSTVAFSECGTYLCAGNS 270 (673)
T ss_pred cCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee----ecCCcceeeecCCceEEEeecC
Confidence 988777665 45999999999999665 555556 9999999999763323332 3678899999999999999999
Q ss_pred CCeEEEEECCCCe-EE-EeccCCCCeEEEEEeCCC
Q 003279 786 YETLELWNMTENK-TL-TLSAHDKLVSSLAASTVN 818 (834)
Q Consensus 786 dg~I~Iwdl~~~~-~~-~l~~h~~~V~~lafspdg 818 (834)
.|.|+.||++..+ ++ .+..|+..|++|+|-+..
T Consensus 271 ~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 271 KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 9999999998765 33 677999999999998864
No 143
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.85 E-value=8.2e-20 Score=194.97 Aligned_cols=294 Identities=18% Similarity=0.256 Sum_probs=213.7
Q ss_pred CeeeeEEEEecCCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEeCCC----CeEEEEeccCCCCeEEEEECC-CCCEEEE
Q 003279 539 GFTFTEFQLIPASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSP-SLSRLAT 611 (834)
Q Consensus 539 g~~~~~~~~l~gH~~~V~sl~fSpdg--~~Lasgs~Dg~I~IWd~~t----~~~~~~l~~h~~~I~~l~fsp-dg~~Lat 611 (834)
...+.....++-|.++|++++|+|.. +++|+|..-|.|-+||+.+ ...+..+..|..+|.++.|+| +...+++
T Consensus 173 l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 173 LDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS 252 (498)
T ss_pred cccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee
Confidence 34445567778899999999999954 5889999999999999942 234566788999999999999 4568999
Q ss_pred EeCCCeEEEEecCCCCce-eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce-eeEee-cCCCeeEEEEe
Q 003279 612 SSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-CQSGATQMRFQ 688 (834)
Q Consensus 612 gs~Dg~I~IWDl~s~~~~-i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~-i~~~~-~~~~i~~l~~s 688 (834)
.|.||+|++-|++..... +.........+.++.|+.+...++ .++.=|...+||++++.. ...+. +...|..++++
T Consensus 253 sSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN 331 (498)
T ss_pred eccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence 999999999999875421 222222445677788887766555 555566999999998665 33333 35589999999
Q ss_pred cCCC-EEEEEEcCCeEEEEECCCCe----EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC-CCceeEEEe
Q 003279 689 PRLG-RILAAAIENYISILDVETQV----CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG-SKGECIHEL 761 (834)
Q Consensus 689 p~g~-~ll~~s~dg~I~iwDl~t~~----~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~-~~~~~i~~~ 761 (834)
|-.. +|++++.|++.+|||++.-. +......|...|.+..|||.+-.|++.+ |+.|+|||..-- ........+
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I 411 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI 411 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee
Confidence 9655 56778889999999998632 2344456999999999999876677777 999999998411 111222222
Q ss_pred ec---CC--CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCC-CCeEE-EEEeCCCC-EEEEEecCCcEEE
Q 003279 762 SC---TG--NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-KLVSS-LAASTVNG-MVASASHDKCVKI 832 (834)
Q Consensus 762 ~~---~~--~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~-~~V~~-lafspdg~-~LaSgs~DG~I~I 832 (834)
.. +. -......|.|+..+|+++..-..|-|||-..++.+ .+.... ..|.+ ..|+|-+. +++-++..|.|+|
T Consensus 412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~v 491 (498)
T KOG4328|consen 412 PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYV 491 (498)
T ss_pred eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEE
Confidence 21 11 12345689999999999998889999999988855 433222 24444 47999888 4444556788988
Q ss_pred e
Q 003279 833 W 833 (834)
Q Consensus 833 W 833 (834)
|
T Consensus 492 f 492 (498)
T KOG4328|consen 492 F 492 (498)
T ss_pred E
Confidence 8
No 144
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=6e-21 Score=214.29 Aligned_cols=234 Identities=18% Similarity=0.341 Sum_probs=195.1
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEe
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWC 580 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpd-g~~Lasgs~Dg~I~IWd 580 (834)
.+++|++.+..+.|.+|+..... .-..+..|..|+..|++++|++- ..+|++|+.||+|++||
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~----------------rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~D 162 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSI----------------RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWD 162 (839)
T ss_pred hhhhheeecCCCcEEEEecCccc----------------cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEe
Confidence 35788888888999999554321 11235678899999999999984 56899999999999999
Q ss_pred CCCCeEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC
Q 003279 581 TESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 659 (834)
Q Consensus 581 ~~t~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D 659 (834)
+...+...++.+..+.|.+|.|+| .+.+|+++.+.|.+.+||++....+...+..|.++|.|+.|+|+ ..+||+|+.|
T Consensus 163 lR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn-r~~lATGGRD 241 (839)
T KOG0269|consen 163 LRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN-REWLATGGRD 241 (839)
T ss_pred eecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC-CceeeecCCC
Confidence 999999999999999999999999 57889999999999999999988888999999999999999996 5588999999
Q ss_pred CcEEEEECCCCc--eeeEeecCCCeeEEEEecCCCEEEEEEc---CCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcC-C
Q 003279 660 SEIRYWSINNGS--CAGVFKCQSGATQMRFQPRLGRILAAAI---ENYISILDVETQ-VCRLKLQGHKNQVHSVCWNT-S 732 (834)
Q Consensus 660 g~I~lwDl~s~~--~i~~~~~~~~i~~l~~sp~g~~ll~~s~---dg~I~iwDl~t~-~~~~~l~~h~~~I~sl~~sp-d 732 (834)
+.|+|||+.+.+ .+.++....++.++.|-|...+.++.+. |-.|+|||++.. -+..++..|...++.++|.. |
T Consensus 242 K~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d 321 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGD 321 (839)
T ss_pred ccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCC
Confidence 999999998654 4556666788999999998777665554 679999999876 56778888999999999965 4
Q ss_pred CCEEEEEe-CCeEEEEEcCCC
Q 003279 733 GEYLASVS-DELVRVWSIGSG 752 (834)
Q Consensus 733 g~~Lasgs-Dg~I~IwDl~s~ 752 (834)
...+.+++ |++|..-.+++.
T Consensus 322 ~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 322 RINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ceeeEeecCccHHHHhhhhcc
Confidence 55677777 887766555544
No 145
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=5.3e-20 Score=202.36 Aligned_cols=269 Identities=19% Similarity=0.307 Sum_probs=215.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeee
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 633 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~ 633 (834)
.|..++|-|||.-|+.+. +..+.|||...|..+.++++|.+.|+|++|+.||+.+++|+.|+.|.+|+..-.. + ..
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG--~-Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG--I-LK 89 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc--e-ee
Confidence 699999999999888775 4589999999999999999999999999999999999999999999999876433 2 22
Q ss_pred ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 003279 634 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 713 (834)
Q Consensus 634 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~ 713 (834)
..|.+.|.|+.|+|-.. .+++|+- ...-+|..... .+...+....+.+.+|..||.+++.|-.+|+|.+-+.. +++
T Consensus 90 YSH~D~IQCMsFNP~~h-~LasCsL-sdFglWS~~qK-~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEe 165 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITH-QLASCSL-SDFGLWSPEQK-SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEE 165 (1081)
T ss_pred eccCCeeeEeecCchHH-Hhhhcch-hhccccChhhh-hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCc
Confidence 45999999999999855 5667774 35678887643 34444455779999999999999999999999998654 333
Q ss_pred EEEEe---CCCCCEEEEEEcCCC-----CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003279 714 RLKLQ---GHKNQVHSVCWNTSG-----EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 784 (834)
Q Consensus 714 ~~~l~---~h~~~I~sl~~spdg-----~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs 784 (834)
...+. +.+++|.+++|+|.. ..+++.. ..++.+|.+.. ..+..-..-.-...|+.+.++|.++++|+
T Consensus 166 k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG----~~Igk~r~L~FdP~CisYf~NGEy~LiGG 241 (1081)
T KOG1538|consen 166 KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG----KQIGKDRALNFDPCCISYFTNGEYILLGG 241 (1081)
T ss_pred ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc----eeecccccCCCCchhheeccCCcEEEEcc
Confidence 33333 467899999999853 4566666 66777777754 23333333455667899999999999999
Q ss_pred cCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 785 CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 785 ~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+|+.+.+|.-+.-..-++...+..|+.++..|++.+++.|+.||+|..|+
T Consensus 242 sdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 242 SDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred CCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 99999999755544446667888999999999999999999999998764
No 146
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=6.6e-20 Score=185.83 Aligned_cols=208 Identities=19% Similarity=0.325 Sum_probs=174.6
Q ss_pred ccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCC------c-----e---eeeeccCCCCeEEEEEccCCCcEEEE
Q 003279 591 EEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD------Y-----S---LRTFTGHSTTVMSLDFHPSKEDLLCS 655 (834)
Q Consensus 591 ~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~s~~------~-----~---i~~~~~h~~~V~sl~fspdg~~llas 655 (834)
..|.+.|+++...+ .|+++++|+.||.|.+||+.+.. . + .....+|...|.++.|.|-...+|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 35889999999988 58999999999999999997533 0 0 11234688899999999988889999
Q ss_pred EeCCCcEEEEECCCCceeeEeecCCCeeEEEEecC---CCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCC
Q 003279 656 CDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR---LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 732 (834)
Q Consensus 656 gs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~---g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spd 732 (834)
++.|.+++|||.++-+....|+.++.|.+-+++|- ...+++|..+-.|++.|+.+|.+...+.+|...|.++.|+|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 99999999999999999999999999999999984 335666667789999999999999999999999999999998
Q ss_pred CCEEE-EEe-CCeEEEEEcCCCC------------CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 003279 733 GEYLA-SVS-DELVRVWSIGSGS------------KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 798 (834)
Q Consensus 733 g~~La-sgs-Dg~I~IwDl~s~~------------~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~ 798 (834)
.+++. +++ ||.|++||++.-. ....+..-..|.+.|..++|..++.++++++.|..+++|+..+|+
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 87654 555 9999999998642 111222234567889999999999999999999999999998775
No 147
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.85 E-value=1.2e-19 Score=186.11 Aligned_cols=267 Identities=18% Similarity=0.287 Sum_probs=206.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCC------------eEEEEec-cCCCCeEEEEEC-------CCCCEEEEEeC
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESF------------TVKSTLE-EHTQWITDVRFS-------PSLSRLATSSA 614 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~------------~~~~~l~-~h~~~I~~l~fs-------pdg~~Latgs~ 614 (834)
...+.|+|||..|++-+.|..+.+|++... +...+++ .....|.+.+|. |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 557899999999999999999999986421 0111111 234568888886 56788999999
Q ss_pred CCeEEEEecCCCCceeeeec--cCCC---CeEEEEEccCCCcEEEEEeCCCcEEEEEC-CCCceeeEe---ec-----CC
Q 003279 615 DRTVRVWDTENPDYSLRTFT--GHST---TVMSLDFHPSKEDLLCSCDNNSEIRYWSI-NNGSCAGVF---KC-----QS 680 (834)
Q Consensus 615 Dg~I~IWDl~s~~~~i~~~~--~h~~---~V~sl~fspdg~~llasgs~Dg~I~lwDl-~s~~~i~~~---~~-----~~ 680 (834)
|.-|++||.-+++. ...+. .|-. ...+++|+|||..++ ++....|++||+ +.|.-...+ .. .+
T Consensus 132 ~~PIh~wdaftG~l-raSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKL-RASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred cCceeeeecccccc-ccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 99999999998775 22222 2333 356899999999776 556889999999 555432222 11 34
Q ss_pred CeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcee
Q 003279 681 GATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGEC 757 (834)
Q Consensus 681 ~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~ 757 (834)
-+.|++|+|-. +.+++++....+-||.-....++..+.+|.+.|+.++|.++|+.|++|. |..|.+||++... ..
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~--~p 286 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR--DP 286 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc--ch
Confidence 58899999955 4788888889999999999999999999999999999999999999998 8899999999763 34
Q ss_pred EEEeecCCC---ceEEEEEeCCCCEEEEEEcCCeEEEEECCC-Ce-EEEeccCCCCeEEEEEeCCCCEEEEEec
Q 003279 758 IHELSCTGN---KFHSCVFHPTFPSLLVIGCYETLELWNMTE-NK-TLTLSAHDKLVSSLAASTVNGMVASASH 826 (834)
Q Consensus 758 i~~~~~~~~---~I~svafspdg~~L~sgs~dg~I~Iwdl~~-~~-~~~l~~h~~~V~~lafspdg~~LaSgs~ 826 (834)
+..+..|.. .-.-....|++.+|++|+.+|.|++||+++ +. +..+..|...|+.++++|--.++|+++.
T Consensus 287 v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence 444444433 233345678999999999999999999988 55 4467789999999999999888888764
No 148
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=7.8e-20 Score=201.59 Aligned_cols=282 Identities=15% Similarity=0.212 Sum_probs=208.5
Q ss_pred cCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003279 500 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 579 (834)
Q Consensus 500 ~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IW 579 (834)
.....+++.+..|+.|.+|....-.. . .....+.....|.+.|..+.|.|....|++++.|.++++|
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~f---------r----~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVF---------R----LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPW 127 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhc---------c----hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeee
Confidence 34567889999999999985533210 0 0111235566899999999999966789999999999999
Q ss_pred eCCCCeEEEE--eccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCCCc--------------------------ee
Q 003279 580 CTESFTVKST--LEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY--------------------------SL 630 (834)
Q Consensus 580 d~~t~~~~~~--l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~s~~~--------------------------~i 630 (834)
|++..+++.. +.+|...|.++||.++ ...|++|+.||.|.|||++.... .+
T Consensus 128 dvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~ 207 (720)
T KOG0321|consen 128 DVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRI 207 (720)
T ss_pred eeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccc
Confidence 9999888866 8899999999999995 56789999999999999874320 01
Q ss_pred eeeccCCCCeEE---EEEccCCCcEEEEEeC-CCcEEEEECCCCceeeEee---------c---CCCeeEEEEecCCCEE
Q 003279 631 RTFTGHSTTVMS---LDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFK---------C---QSGATQMRFQPRLGRI 694 (834)
Q Consensus 631 ~~~~~h~~~V~s---l~fspdg~~llasgs~-Dg~I~lwDl~s~~~i~~~~---------~---~~~i~~l~~sp~g~~l 694 (834)
.....+...|.+ +.+..|.. .||+++. |+.|+|||++...+..... + ..++.++.....|.++
T Consensus 208 ~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L 286 (720)
T KOG0321|consen 208 RKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYL 286 (720)
T ss_pred cccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeE
Confidence 112234444444 44445544 5556665 9999999999765443221 1 2357888888889999
Q ss_pred EEEEcCCeEEEEECCCC--eEEEEEeCCCCC--EEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003279 695 LAAAIENYISILDVETQ--VCRLKLQGHKNQ--VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 769 (834)
Q Consensus 695 l~~s~dg~I~iwDl~t~--~~~~~l~~h~~~--I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 769 (834)
++.+.|+.|++|++.+. .++..+.++... ...-..+||+.+|++++ |...++|.+.+.+ .....+.+|...|+
T Consensus 287 ~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e--~~~~~l~Ght~eVt 364 (720)
T KOG0321|consen 287 FASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE--APPALLLGHTREVT 364 (720)
T ss_pred EEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc--CChhhhhCcceEEE
Confidence 99999999999999864 344455443321 12335689999999999 9999999998875 45556778899999
Q ss_pred EEEEeCCC-CEEEEEEcCCeEEEEECCCC
Q 003279 770 SCVFHPTF-PSLLVIGCYETLELWNMTEN 797 (834)
Q Consensus 770 svafspdg-~~L~sgs~dg~I~Iwdl~~~ 797 (834)
+++|.|.. .-+++++.|..++||++..+
T Consensus 365 ~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 365 TVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred EEeeccccCCCceeeccCcceEEEeccCc
Confidence 99998753 33777788999999999654
No 149
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=2.6e-17 Score=181.49 Aligned_cols=312 Identities=27% Similarity=0.430 Sum_probs=236.6
Q ss_pred cCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCC-CCeEEEEE-cCCCC-EEEEEeC-CCc
Q 003279 500 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHF-SPDGK-LLATGGH-DKK 575 (834)
Q Consensus 500 ~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~-~~V~sl~f-Spdg~-~Lasgs~-Dg~ 575 (834)
......+..++.|+.+.+|...... ..+..+.++. ..+..+.+ ++++. +++..+. |+.
T Consensus 74 ~~~~~~~~~~~~d~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 135 (466)
T COG2319 74 SPDGELLLSGSSDGTIKLWDLDNGE------------------KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGT 135 (466)
T ss_pred CCCCcEEEEecCCCcEEEEEcCCCc------------------eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCcc
Confidence 4445677777788899998655442 2234444433 36777777 88887 5555444 999
Q ss_pred EEEEeCCC-CeEEEEeccCCCCeEEEEECCCCCEEEEEeC-CCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEE
Q 003279 576 AVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 653 (834)
Q Consensus 576 I~IWd~~t-~~~~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~ll 653 (834)
+.+|+... ......+..|...|.+++|+|++.++++++. |+.+++|++.... .+..+.+|...|.+++|+|++..++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~ 214 (466)
T COG2319 136 VKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDPVSSLAFSPDGGLLI 214 (466)
T ss_pred EEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCceEEEEEcCCcceEE
Confidence 99999998 8888899999999999999999998988886 9999999999743 4777788999999999999887566
Q ss_pred EEEeCCCcEEEEECCCCceee-EeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE-EEEEeCCCCCEEEEEEcC
Q 003279 654 CSCDNNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCWNT 731 (834)
Q Consensus 654 asgs~Dg~I~lwDl~s~~~i~-~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~-~~~l~~h~~~I~sl~~sp 731 (834)
++++.|+.|++||...+..+. .+..+.......|++++..+++++.++.+++||++.... ...+..|...|.++.|+|
T Consensus 215 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 294 (466)
T COG2319 215 ASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294 (466)
T ss_pred EEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC
Confidence 666899999999999777777 455433332227999988888999999999999997654 444467889999999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCCCceeEEEe--ecCCCceEEEEEeCCCCEEEEE-EcCCeEEEEECCCCeEEEeccCCC
Q 003279 732 SGEYLASVS-DELVRVWSIGSGSKGECIHEL--SCTGNKFHSCVFHPTFPSLLVI-GCYETLELWNMTENKTLTLSAHDK 807 (834)
Q Consensus 732 dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~--~~~~~~I~svafspdg~~L~sg-s~dg~I~Iwdl~~~~~~~l~~h~~ 807 (834)
++..+++++ |+.+.+||+.+.. ..... ..|...+..+.|.+++..++.+ ..|+.+.+|++.............
T Consensus 295 ~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 371 (466)
T COG2319 295 DGKLLASGSSDGTVRLWDLETGK---LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS 371 (466)
T ss_pred CCCEEEEeeCCCcEEEEEcCCCc---eEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc
Confidence 888888876 8889999888773 33333 3566678888884332556666 577889999998887333222333
Q ss_pred CeEEEEEeCCCCEEEE-EecCCcEEEeC
Q 003279 808 LVSSLAASTVNGMVAS-ASHDKCVKIWK 834 (834)
Q Consensus 808 ~V~~lafspdg~~LaS-gs~DG~I~IWd 834 (834)
.+..+.+.+ ...++. +..++.+.+|+
T Consensus 372 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 398 (466)
T COG2319 372 NVLSVSFSP-DGRVVSSGSTDGTVRLWD 398 (466)
T ss_pred eEEEEEECC-CCCEEEEecCCCceEEEe
Confidence 388999988 544444 68899999996
No 150
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.6e-20 Score=219.45 Aligned_cols=243 Identities=19% Similarity=0.352 Sum_probs=202.6
Q ss_pred CCeEEEEEcCCCCE----EEEEeCCCcEEEEeCCCC------eEEEEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEEE
Q 003279 553 SKVESCHFSPDGKL----LATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVW 621 (834)
Q Consensus 553 ~~V~sl~fSpdg~~----Lasgs~Dg~I~IWd~~t~------~~~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~IW 621 (834)
.+.+.++|.+.|.. ||.|.+||.|.+||.... ..+.+...|++.|..+.|++... +||+|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 45778999887665 899999999999997652 33456678999999999999754 99999999999999
Q ss_pred ecCCCCceeee-eccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCC---eeEEEEecCCCE-EEE
Q 003279 622 DTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG---ATQMRFQPRLGR-ILA 696 (834)
Q Consensus 622 Dl~s~~~~i~~-~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~---i~~l~~sp~g~~-ll~ 696 (834)
|+.+.+.+... .....+.|.+++|+..-.++|++++.+|.+.|||++..+.+..+..... +..+.|+|+... +++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 99986543333 2224578999999998889999999999999999999888777765444 788999998654 555
Q ss_pred EEcCC---eEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEE
Q 003279 697 AAIEN---YISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS 770 (834)
Q Consensus 697 ~s~dg---~I~iwDl~t~-~~~~~l~~h~~~I~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~s 770 (834)
++.|. .|.+||++.- .++..+++|...|.++.|++.+ ++|++++ |+.|.+|+.+++ +.+.++......+..
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg---Evl~~~p~~~nW~fd 301 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG---EVLGELPAQGNWCFD 301 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc---eEeeecCCCCcceee
Confidence 55543 7999999865 6777888999999999999966 7778777 999999999998 888899888999999
Q ss_pred EEEeCCCC-EEEEEEcCCeEEEEECCCCe
Q 003279 771 CVFHPTFP-SLLVIGCYETLELWNMTENK 798 (834)
Q Consensus 771 vafspdg~-~L~sgs~dg~I~Iwdl~~~~ 798 (834)
+.|.|... .+++.+.||.|.||.+.+..
T Consensus 302 v~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 302 VQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999987 67788889999999987655
No 151
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=3.2e-17 Score=180.87 Aligned_cols=284 Identities=29% Similarity=0.466 Sum_probs=228.1
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEE
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRV 620 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~-Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~I 620 (834)
.....+..|...|.+++|+|++.++++++. |+.+++|++..++.+..+.+|...|.+++|+|++. ++++++.|+.|++
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence 456778899999999999999999998886 99999999999899999999999999999999988 5555599999999
Q ss_pred EecCCCCceee-eeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce-eeEe-ecCCCeeEEEEecCCCEEEEE
Q 003279 621 WDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVF-KCQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 621 WDl~s~~~~i~-~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~-i~~~-~~~~~i~~l~~sp~g~~ll~~ 697 (834)
||...+.. +. .+.+|...+ ...|++++ .++++++.|+.+++|++..... +..+ .+...+.++.|.|++..++++
T Consensus 226 wd~~~~~~-~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 302 (466)
T COG2319 226 WDLSTGKL-LRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302 (466)
T ss_pred EECCCCcE-EeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEe
Confidence 98885443 44 678888775 44899998 4666899999999999987664 4443 345779999999988888888
Q ss_pred EcCCeEEEEECCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEEE-e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003279 698 AIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASV-S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 773 (834)
Q Consensus 698 s~dg~I~iwDl~t~~~~~~l~--~h~~~I~sl~~spdg~~Lasg-s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svaf 773 (834)
+.|+.+.+||..+........ .|...+..+.|.+++..++.+ . |+.+.+|++.... ....... ...+..+.+
T Consensus 303 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~ 378 (466)
T COG2319 303 SSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---PLKTLEG-HSNVLSVSF 378 (466)
T ss_pred eCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---eeEEecC-CceEEEEEE
Confidence 889889999999887666665 788889999994333566655 4 8889999998873 2222222 222888889
Q ss_pred eCCCCEEEE-EEcCCeEEEEECCCCeEEEeccCC-CCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 774 HPTFPSLLV-IGCYETLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 774 spdg~~L~s-gs~dg~I~Iwdl~~~~~~~l~~h~-~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.+ ...++. +..++.+.+|+............. ..+....+++++..+++++.++.+++|+
T Consensus 379 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 379 SP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440 (466)
T ss_pred CC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence 88 533443 577889999999998887555444 8899999999999999999999999995
No 152
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=4.1e-19 Score=187.41 Aligned_cols=296 Identities=19% Similarity=0.271 Sum_probs=211.2
Q ss_pred eEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC--
Q 003279 505 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-- 582 (834)
Q Consensus 505 ~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~-- 582 (834)
++++|+.|..|++|......... .+..+.....|..|...|++|.|+|+|.+||+|+.+|.|.+|-..
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~----------~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~ 97 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGG----------GDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDV 97 (434)
T ss_pred ceecccCccceeeeeeeecCCCC----------CceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCc
Confidence 88999999999999555443321 124566778899999999999999999999999999999999644
Q ss_pred ------C--------CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccC
Q 003279 583 ------S--------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 648 (834)
Q Consensus 583 ------t--------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspd 648 (834)
+ ......+.+|.+.|..++|++++.++++++-|..+++||+..+.. ...+..|...|..++|.|-
T Consensus 98 ~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l-~~~~~dh~~yvqgvawDpl 176 (434)
T KOG1009|consen 98 RIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL-LAILDDHEHYVQGVAWDPL 176 (434)
T ss_pred CCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee-Eeeccccccccceeecchh
Confidence 2 345567789999999999999999999999999999999998764 7888999999999999998
Q ss_pred CCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEE
Q 003279 649 KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVC 728 (834)
Q Consensus 649 g~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~ 728 (834)
+. ++++-+.|...+.+.+.....+..... .....-.+.+. .....++|.-++. ......++
T Consensus 177 ~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~-~~m~~~~~~~~--------e~~s~rLfhDeTl---------ksFFrRls 237 (434)
T KOG1009|consen 177 NQ-YVASKSSDRHPEGFSAKLKQVIKRHGL-DIMPAKAFNER--------EGKSTRLFHDETL---------KSFFRRLS 237 (434)
T ss_pred hh-hhhhhccCcccceeeeeeeeeeeeeee-eEeeecccCCC--------CcceeeeeecCch---------hhhhhhcc
Confidence 66 555777787777776665443333221 00000001111 1112333322221 22345678
Q ss_pred EcCCCCEEEEEe-----CC-----eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC-----------------CCEEE
Q 003279 729 WNTSGEYLASVS-----DE-----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT-----------------FPSLL 781 (834)
Q Consensus 729 ~spdg~~Lasgs-----Dg-----~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspd-----------------g~~L~ 781 (834)
|+|||.+|++.. .+ ..++|+-... ..++..+.+.......+.|+|- .+.++
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l--~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvf 315 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDL--KRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVF 315 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeeccccc--cCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEE
Confidence 889998887643 22 3455554322 2444555555555555555441 23466
Q ss_pred EEEcCCeEEEEECCCCeEE--EeccCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 782 VIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 782 sgs~dg~I~Iwdl~~~~~~--~l~~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
+....+.|+|||..+-+++ .-.-|-..|++++|++||.+|+..+.||...+
T Consensus 316 aiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 316 AIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred EEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 6677779999999998877 33468899999999999999999999997643
No 153
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.9e-19 Score=191.80 Aligned_cols=236 Identities=19% Similarity=0.362 Sum_probs=186.4
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCe---EEE------------------EeccCCCCeEEEEECCC-CCEEEEEeCCCeEEE
Q 003279 563 DGKLLATGGHDKKAVLWCTESFT---VKS------------------TLEEHTQWITDVRFSPS-LSRLATSSADRTVRV 620 (834)
Q Consensus 563 dg~~Lasgs~Dg~I~IWd~~t~~---~~~------------------~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~I 620 (834)
-|+|+|.|+.|..|.|||+.-.. +.. .-.+|++.|.++.|+.. ...||+||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 36799999999999999975211 111 12369999999999875 568999999999999
Q ss_pred EecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-CceeeEeecCCCeeEEEEecCCC-EEEEEE
Q 003279 621 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLG-RILAAA 698 (834)
Q Consensus 621 WDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s-~~~i~~~~~~~~i~~l~~sp~g~-~ll~~s 698 (834)
||+.+++. ..++..|...|.++.|+|....++++|+.|++|.+.|.+. ...-..++..+.|..++|.|... .++++.
T Consensus 271 WD~~~g~p-~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 271 WDVDTGKP-KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EEcCCCCc-ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence 99998774 7788889999999999999999999999999999999994 34445666678999999999654 566667
Q ss_pred cCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003279 699 IENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 775 (834)
Q Consensus 699 ~dg~I~iwDl~t~-~~~~~l~~h~~~I~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafsp 775 (834)
.||.|+-+|+|.. +++.++..|...|.+|++++.-. ++++++ |+.|++|++..... ..+......-+...|.++.|
T Consensus 350 ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~~~~~~~rl~c~~~~~ 428 (463)
T KOG0270|consen 350 DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKEHSFKLGRLHCFALDP 428 (463)
T ss_pred CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-cccccccccccceeecccCC
Confidence 7899999999976 99999999999999999988644 566666 99999999976532 22222222234467778888
Q ss_pred CCCEE-EEEEcCCeEEEEECCCCeEE
Q 003279 776 TFPSL-LVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 776 dg~~L-~sgs~dg~I~Iwdl~~~~~~ 800 (834)
+-.++ ++|+..+.++|||+.+...+
T Consensus 429 ~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 429 DVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred CcceEEEecCccceEEEeecccChhH
Confidence 87654 45566667999999887654
No 154
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=1.7e-19 Score=192.52 Aligned_cols=256 Identities=16% Similarity=0.247 Sum_probs=203.4
Q ss_pred EeCCCCeEEEEeccCCCCeEEEEECCCC--CEEEEEeCCCeEEEEecC---CCCceeeeeccCCCCeEEEEEccCCCcEE
Q 003279 579 WCTESFTVKSTLEEHTQWITDVRFSPSL--SRLATSSADRTVRVWDTE---NPDYSLRTFTGHSTTVMSLDFHPSKEDLL 653 (834)
Q Consensus 579 Wd~~t~~~~~~l~~h~~~I~~l~fspdg--~~Latgs~Dg~I~IWDl~---s~~~~i~~~~~h~~~V~sl~fspdg~~ll 653 (834)
+|+.+......++.+.+.|++++|+|.. +++|+|+..|.|-+||+. .....+..+..|..+|.+|.|+|.+...+
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 4455555666777789999999999953 588899999999999995 22234577888999999999999988889
Q ss_pred EEEeCCCcEEEEECCCCceeeEeec---CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE-EEEEeCCCCCEEEEEE
Q 003279 654 CSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCW 729 (834)
Q Consensus 654 asgs~Dg~I~lwDl~s~~~i~~~~~---~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~-~~~l~~h~~~I~sl~~ 729 (834)
++.+.||+|++-|++.......+.. ...+..+.|+.+...++++..-|.+.+||++++.. ...+.-|...|++|++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 9999999999999998755444443 33467788888888899998888999999998754 6667779999999999
Q ss_pred cCCC-CEEEEEe-CCeEEEEEcCCCCCce-eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC----CCeEEEe
Q 003279 730 NTSG-EYLASVS-DELVRVWSIGSGSKGE-CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT----ENKTLTL 802 (834)
Q Consensus 730 spdg-~~Lasgs-Dg~I~IwDl~s~~~~~-~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~----~~~~~~l 802 (834)
+|.. .+|++++ |++++|||++.-.... ++.....|...|.++.|||.+..|++.+.|..|+|||.. .-.+...
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~ 410 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT 410 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence 9965 5677777 9999999999754433 344555689999999999999889999999999999984 2333333
Q ss_pred ccCCC------CeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 803 SAHDK------LVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 803 ~~h~~------~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
..|.. ......|.|+..+|++|..-..|-|+|
T Consensus 411 I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 411 IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred eeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 34432 234568999999999998888787775
No 155
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=6e-19 Score=180.63 Aligned_cols=243 Identities=18% Similarity=0.263 Sum_probs=183.6
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc----eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 003279 588 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 663 (834)
Q Consensus 588 ~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~----~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 663 (834)
..+++|.+.|++++|+.||++|+|++.|++|+||+++.-.. +++.- -.-+..+.+.|.||-..+++++-....++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 35689999999999999999999999999999999985321 11111 12235788999999999999998888999
Q ss_pred EEECCCC---ceeeEee----------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEc
Q 003279 664 YWSINNG---SCAGVFK----------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 730 (834)
Q Consensus 664 lwDl~s~---~~i~~~~----------~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~s 730 (834)
+|.+... .....+. +.-.+..+-+...+.+|++++.|..|.+||++ |+.+..+......-+..+.|
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 9987532 2111111 12235566667778899999999999999999 88888877666677888999
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCCC-----CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-------
Q 003279 731 TSGEYLASVS-DELVRVWSIGSGS-----KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN------- 797 (834)
Q Consensus 731 pdg~~Lasgs-Dg~I~IwDl~s~~-----~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~------- 797 (834)
|+|++|++++ .--|+||.+--.+ ....+..+.+|...|..++|+++...+++.+.||+++|||++-.
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp 317 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP 317 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc
Confidence 9999999998 7789999874332 22345678899999999999999999999999999999998532
Q ss_pred eEE-----EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 798 KTL-----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 798 ~~~-----~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
+.+ .+....+....++.+|.|..||.+. ...|++|
T Consensus 318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~ 357 (420)
T KOG2096|consen 318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVF 357 (420)
T ss_pred hHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEE
Confidence 111 1122234455899999999888653 2335443
No 156
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.2e-20 Score=218.49 Aligned_cols=274 Identities=20% Similarity=0.301 Sum_probs=215.9
Q ss_pred EEEEcCCCC-EEEEEe----------CCCcEEEEeCCC--C----eEEEEeccCCCCeEEEEECCCCCE----EEEEeCC
Q 003279 557 SCHFSPDGK-LLATGG----------HDKKAVLWCTES--F----TVKSTLEEHTQWITDVRFSPSLSR----LATSSAD 615 (834)
Q Consensus 557 sl~fSpdg~-~Lasgs----------~Dg~I~IWd~~t--~----~~~~~l~~h~~~I~~l~fspdg~~----Latgs~D 615 (834)
.++|+|++. ++|+|. .+.++.||.+.. . +.+..+. -....++++|.+.+.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 478999886 566542 245666665432 2 2333332 3456789999987665 8899999
Q ss_pred CeEEEEecCCC-----CceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee---cCCCeeEEEE
Q 003279 616 RTVRVWDTENP-----DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRF 687 (834)
Q Consensus 616 g~I~IWDl~s~-----~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~---~~~~i~~l~~ 687 (834)
|.|.+||...- ...+..+..|.+.|..++|++...+++++|+.||.|.|||+++-+.-..+. ..+.|.+++|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 99999998752 224567788999999999999999999999999999999998755444432 3567999999
Q ss_pred ecCCCEEE-EEEcCCeEEEEECCCCeEEEEEeCCCC--CEEEEEEcCCCC-EEEEEe--CC--eEEEEEcCCCCCceeEE
Q 003279 688 QPRLGRIL-AAAIENYISILDVETQVCRLKLQGHKN--QVHSVCWNTSGE-YLASVS--DE--LVRVWSIGSGSKGECIH 759 (834)
Q Consensus 688 sp~g~~ll-~~s~dg~I~iwDl~t~~~~~~l~~h~~--~I~sl~~spdg~-~Lasgs--Dg--~I~IwDl~s~~~~~~i~ 759 (834)
+..-.+|+ +++.+|.+.|||++..+.+..+..+.. .+..+.|+|++. .|++++ |+ .|.+||++.-. ..+.
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--sP~k 247 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--SPLK 247 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--Cchh
Confidence 98655554 555678999999999988888876655 477899999864 444444 33 89999998764 5677
Q ss_pred EeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCC-EEEEEecCCcEEEe
Q 003279 760 ELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCVKIW 833 (834)
Q Consensus 760 ~~~~~~~~I~svafspdg-~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~-~LaSgs~DG~I~IW 833 (834)
++.+|...|.++.|++.+ .++++++.|+.|.+|+.++++++ .+......+..+.|+|... .+++++-||.|-||
T Consensus 248 ~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 248 ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 788999999999999977 78889999999999999999999 6667788999999999776 88889999999987
No 157
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=5.6e-19 Score=180.69 Aligned_cols=269 Identities=15% Similarity=0.246 Sum_probs=202.7
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 581 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~ 581 (834)
...++|.|+.|+.|.+|+...- ..-+.+.+|..+|+|++||+||+.|+|++.|..|.+||+
T Consensus 34 ~G~~lAvGc~nG~vvI~D~~T~-------------------~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl 94 (405)
T KOG1273|consen 34 WGDYLAVGCANGRVVIYDFDTF-------------------RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDL 94 (405)
T ss_pred CcceeeeeccCCcEEEEEcccc-------------------chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEec
Confidence 3478999999999999954322 234667899999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEecCCCCceeeeecc---CCCCeEEEEEccCCCcEEEEEe
Q 003279 582 ESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCD 657 (834)
Q Consensus 582 ~t~~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~s~~~~i~~~~~---h~~~V~sl~fspdg~~llasgs 657 (834)
..|.++..+. ...+|+.+.|+|.. +.++++-.+..-.+-++..+...+..... .+....+..|++.|+ ++++|.
T Consensus 95 ~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~-yIitGt 172 (405)
T KOG1273|consen 95 LKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK-YIITGT 172 (405)
T ss_pred cCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC-EEEEec
Confidence 9999998885 67899999999943 33333334444555666543321111111 111222335777776 556899
Q ss_pred CCCcEEEEECCCCceeeEeecC--CCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-------eE--EEEEeC--CCCCE
Q 003279 658 NNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVETQ-------VC--RLKLQG--HKNQV 724 (834)
Q Consensus 658 ~Dg~I~lwDl~s~~~i~~~~~~--~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~-------~~--~~~l~~--h~~~I 724 (834)
..|.+.++|..+-+++..++.. ..|..+.++..|..|++-+.|..|+.|+++.- ++ ..++.. ....-
T Consensus 173 sKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W 252 (405)
T KOG1273|consen 173 SKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW 252 (405)
T ss_pred CcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence 9999999999999999888764 46889999999999999999999999998731 11 111111 12234
Q ss_pred EEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCC-CceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003279 725 HSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 725 ~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~-~~I~svafspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
.+++|+.+|.|+++++ -..++||.-..| ..++.+.+.. .....+.|+|-...|++. ..|.|++|...
T Consensus 253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~G---sLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGSARAHALYIWEKSIG---SLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred hheeecCCccEEEeccccceeEEEEecCCc---ceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 5889999999999988 558999999888 6777777766 567889999999877777 77899999864
No 158
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.82 E-value=1e-18 Score=191.57 Aligned_cols=134 Identities=22% Similarity=0.362 Sum_probs=106.4
Q ss_pred CCeEEEEECCCC-eE----EEEEeCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCCC----ceeEEEeecCCCce
Q 003279 700 ENYISILDVETQ-VC----RLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSK----GECIHELSCTGNKF 768 (834)
Q Consensus 700 dg~I~iwDl~t~-~~----~~~l~~h~~~I~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s~~~----~~~i~~~~~~~~~I 768 (834)
.|.|-||+++.. +. +-.+. ....|+.+.|+| |...|+++. ||.|++|.+..+.. ...-..+..|...|
T Consensus 602 gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI 680 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKI 680 (1012)
T ss_pred CceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceE
Confidence 455666666542 11 11111 345789999999 556777777 99999999987543 23455678899999
Q ss_pred EEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 769 HSCVFHPTF-PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 769 ~svafspdg-~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+++.|+|-. ..|++++.|-+|++||+.+.+.. .+.+|.+.|.+++|||||+.+|+.+.||+|++|+
T Consensus 681 ~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 681 TSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred EEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 999999954 57888899999999999998766 8899999999999999999999999999999985
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=8.1e-19 Score=188.22 Aligned_cols=219 Identities=17% Similarity=0.257 Sum_probs=185.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeec
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 634 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~ 634 (834)
-+|++......|+++|+..++|+|||+....+.+.+++|...|+++.++....|||+++..|.|.|..+.++.. ...+.
T Consensus 82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-tt~f~ 160 (673)
T KOG4378|consen 82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-TTTFT 160 (673)
T ss_pred HHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc-cccee
Confidence 44555555558999999999999999998778888999999999999999999999999999999999998664 34444
Q ss_pred cC-CCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee--cCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCC
Q 003279 635 GH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRL-GRILAAAIENYISILDVET 710 (834)
Q Consensus 635 ~h-~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~--~~~~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t 710 (834)
.. ...|.-+.|++..+.+|.+++++|.|.+||+....++..+. |..+...|||+|.. ..|++.+.|..|++||.+.
T Consensus 161 ~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s 240 (673)
T KOG4378|consen 161 IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS 240 (673)
T ss_pred cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc
Confidence 33 45667899999999999999999999999999877766554 46678889999954 5677889999999999998
Q ss_pred CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003279 711 QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 777 (834)
Q Consensus 711 ~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg 777 (834)
......+. ...+...++|.++|.+|++|. .|.|+.||++... .++..+..|...|++++|-+.-
T Consensus 241 ~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k--~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 241 QASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK--APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCC--CCceEeeecccceeEEEeeecc
Confidence 77766665 456889999999999999999 9999999999764 6778888899999999998764
No 160
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=7.3e-19 Score=187.37 Aligned_cols=252 Identities=19% Similarity=0.267 Sum_probs=188.6
Q ss_pred cCCCceEEeccCCCCeEEeec--CCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcE
Q 003279 500 TDMDRFVDDGSLDDNVESFLS--PDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKA 576 (834)
Q Consensus 500 ~~~~~~l~~Gs~D~~v~~~~s--~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I 576 (834)
....+++|.|.+|..|.+|+. .+...+...+++...-.+...-+.-..-.+|++.|.+++|+.+- ..||+||.|.+|
T Consensus 189 ~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 189 GGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTV 268 (463)
T ss_pred CCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceE
Confidence 556789999999999999943 33333433333221111111111112234799999999998854 479999999999
Q ss_pred EEEeCCCCeEEEEeccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEE
Q 003279 577 VLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 655 (834)
Q Consensus 577 ~IWd~~t~~~~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llas 655 (834)
++||+.++++..++..|.+.|.++.|+|. ..+|++|+.|++|.+.|.+.....-..+ ...+.|-.++|.|.....+++
T Consensus 269 ~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~ 347 (463)
T KOG0270|consen 269 KLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFV 347 (463)
T ss_pred EEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEE
Confidence 99999999999999999999999999994 6789999999999999999644322222 356789999999999999999
Q ss_pred EeCCCcEEEEECCCC-ceeeEee-cCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeE--EEEEeCCCCCEEEEEEc
Q 003279 656 CDNNSEIRYWSINNG-SCAGVFK-CQSGATQMRFQPRL-GRILAAAIENYISILDVETQVC--RLKLQGHKNQVHSVCWN 730 (834)
Q Consensus 656 gs~Dg~I~lwDl~s~-~~i~~~~-~~~~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t~~~--~~~l~~h~~~I~sl~~s 730 (834)
+..||+|+-+|++.. +++.++. |..+|.+++++... +.+++++.|+.|++|++..... +..-.-.-+...|.++.
T Consensus 348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~ 427 (463)
T KOG0270|consen 348 STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALD 427 (463)
T ss_pred ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccC
Confidence 999999999999975 8888877 46789999998854 4577788899999999875433 22111112346677788
Q ss_pred CCCCE-EEEEe-CCeEEEEEcCCC
Q 003279 731 TSGEY-LASVS-DELVRVWSIGSG 752 (834)
Q Consensus 731 pdg~~-Lasgs-Dg~I~IwDl~s~ 752 (834)
|+-.+ ++.|+ .+.++|||+.+.
T Consensus 428 ~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 428 PDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred CCcceEEEecCccceEEEeecccC
Confidence 87554 44455 668999999876
No 161
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.81 E-value=1e-18 Score=182.60 Aligned_cols=241 Identities=22% Similarity=0.339 Sum_probs=189.7
Q ss_pred ccCCCCeEEEEECCC--CCEEEEEeCCCeEEEEecCC---------------CCceeeeeccCCCCeEEEEEccCCCcEE
Q 003279 591 EEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTEN---------------PDYSLRTFTGHSTTVMSLDFHPSKEDLL 653 (834)
Q Consensus 591 ~~h~~~I~~l~fspd--g~~Latgs~Dg~I~IWDl~s---------------~~~~i~~~~~h~~~V~sl~fspdg~~ll 653 (834)
..|.+.|+.+.-.+- ..+.++-+..|.|.|||+.. ...++.++.+|...=+.|+|+|-....+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 457778888877764 44566667789999999862 2235678889999999999999655567
Q ss_pred EEEeCCCcEEEEECCCCceee----EeecCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCC---eEEEEEeCCCCCEE
Q 003279 654 CSCDNNSEIRYWSINNGSCAG----VFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQ---VCRLKLQGHKNQVH 725 (834)
Q Consensus 654 asgs~Dg~I~lwDl~s~~~i~----~~~~~~~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t~---~~~~~l~~h~~~I~ 725 (834)
++|+.-+.|++|...++.-.. ...+...|..++|+|.. +.|++|+.||+|+|||++.+ .++.+ +.|.+.|+
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVN 306 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVN 306 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCcee
Confidence 788888899999998865332 22256679999999964 56778888999999999987 34444 78999999
Q ss_pred EEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeE----
Q 003279 726 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKT---- 799 (834)
Q Consensus 726 sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg-~~L~sgs~dg~I~Iwdl~~~~~---- 799 (834)
.|.|+.+-.+|++|+ ||+++|||++..+...++..+.-|..+|+++.|+|.. ..|++++.|..|.|||+.-..-
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~ 386 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI 386 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence 999999888999999 8999999999988778999999999999999999965 5677888899999999853221
Q ss_pred -------------EEeccC--CCCeEEEEEeCCC-CEEEEEecCCcEEEe
Q 003279 800 -------------LTLSAH--DKLVSSLAASTVN-GMVASASHDKCVKIW 833 (834)
Q Consensus 800 -------------~~l~~h--~~~V~~lafspdg-~~LaSgs~DG~I~IW 833 (834)
..+.-| ...|..+.|++.- .+|++.+.|| +.||
T Consensus 387 ~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 387 DQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred ccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 012234 4568889999864 4888888998 4454
No 162
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1e-18 Score=191.41 Aligned_cols=243 Identities=19% Similarity=0.262 Sum_probs=199.4
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEE
Q 003279 586 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 665 (834)
Q Consensus 586 ~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lw 665 (834)
+-..+.+|++.|.||...|.|.+|++|+.||+|+||.+.++.+ ++++. ..+.|.||+|+|.+..-+++...+..+.|.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc-vr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC-VRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE-EEEEe-ecceeEEEEecCCCCceeEEEEecCceEEe
Confidence 3456789999999999999999999999999999999999875 55544 456899999999876544444434444444
Q ss_pred ECCCC--------------------------------------ceeeEeecCCCeeEEEEecCCCEEEEEEcC---CeEE
Q 003279 666 SINNG--------------------------------------SCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYIS 704 (834)
Q Consensus 666 Dl~s~--------------------------------------~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d---g~I~ 704 (834)
+..-| ....++.+...|..+.|+..|.||++...+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 43211 012345567789999999999999998875 4799
Q ss_pred EEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003279 705 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 784 (834)
Q Consensus 705 iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs 784 (834)
|+++.......-|....+.|.++.|+|...+|++++-..|+|||+... ..+..+......|..++++|.|..|++++
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq---elvKkL~tg~kwiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ---ELVKKLLTGSKWISSMSIHPNGDNLILGS 626 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHH---HHHHHHhcCCeeeeeeeecCCCCeEEEec
Confidence 999988776666766678899999999999999999999999999876 56666666778899999999999999999
Q ss_pred cCCeEEEEECCCCeE--EEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 785 CYETLELWNMTENKT--LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 785 ~dg~I~Iwdl~~~~~--~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
.|+.+..||+.-+.. .++..|...|++++|++.-.++++|+.||++.||
T Consensus 627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 999999999876533 3788999999999999999999999999999886
No 163
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2e-18 Score=180.32 Aligned_cols=283 Identities=16% Similarity=0.218 Sum_probs=213.9
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC------CeEEEEec-cCCCCeEEEEECCCCCEEEEEeCCCeE
Q 003279 546 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------FTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTV 618 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t------~~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I 618 (834)
+.+.+|.+.|.++.|+.++++||+|+.|..++||+++. .+++.... .|...|.|++|....++|++|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 45679999999999999999999999999999999763 34554443 456899999999999999999999999
Q ss_pred EEEecCCCCceeeeeccCC---CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc----eeeEeecCCCeeEEEEecCC
Q 003279 619 RVWDTENPDYSLRTFTGHS---TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS----CAGVFKCQSGATQMRFQPRL 691 (834)
Q Consensus 619 ~IWDl~s~~~~i~~~~~h~---~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~----~i~~~~~~~~i~~l~~sp~g 691 (834)
.+.|+++... +..+ .|. +.|+.+..+|. ..+|++.+.++.|.+||++... ++..-........+.|+|..
T Consensus 130 I~HDiEt~qs-i~V~-~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 130 IKHDIETKQS-IYVA-NENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred Eeeeccccee-eeee-cccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 9999998553 3333 343 58999999999 5577788999999999998654 22222335668899999976
Q ss_pred CE-EEEEEcCCeEEEEECCCCe-EEEEEeC------CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee
Q 003279 692 GR-ILAAAIENYISILDVETQV-CRLKLQG------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS 762 (834)
Q Consensus 692 ~~-ll~~s~dg~I~iwDl~t~~-~~~~l~~------h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~ 762 (834)
.. |++.+..+.+.+||.+... .+....+ ....-.++.|+|+|..|.+-- ...-.+||+.+.. ..+..+.
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R--~~V~k~D 284 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR--CFVLKSD 284 (609)
T ss_pred ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc--ceeEecc
Confidence 55 5556667899999998753 2222211 122235788999999888766 4566778887642 1222222
Q ss_pred c------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC------------------------CeEEEeccCCCCeEEE
Q 003279 763 C------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE------------------------NKTLTLSAHDKLVSSL 812 (834)
Q Consensus 763 ~------~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~------------------------~~~~~l~~h~~~V~~l 812 (834)
. ....+.+|+|..+.. +++|+.+-.|++|.+.. +....+.+|...+..+
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV 363 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV 363 (609)
T ss_pred CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence 1 123567788887766 88888888999998732 1233678999999999
Q ss_pred EEeCCCCEEEEEecCCcEEEeC
Q 003279 813 AASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 813 afspdg~~LaSgs~DG~I~IWd 834 (834)
.|+|...+|++.+....++||-
T Consensus 364 RF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 364 RFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred eecCCcceEeccchhhheeccc
Confidence 9999999999999999999993
No 164
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.80 E-value=6.9e-19 Score=176.38 Aligned_cols=285 Identities=19% Similarity=0.199 Sum_probs=203.1
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 544 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
++.++++|.+.|+|+.|-.+++ |.+|..-|.|++|++.+.+.+..++ .|...|+.+.-.|+ ..|.+-+.|..+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 4567889999999999998875 8899999999999999998888887 67888999998887 5788899999999999
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccC-----CC---cEEEEEeCCC-cEEEEECCCCceeeEee-----cCCCeeEEEEe
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPS-----KE---DLLCSCDNNS-EIRYWSINNGSCAGVFK-----CQSGATQMRFQ 688 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspd-----g~---~llasgs~Dg-~I~lwDl~s~~~i~~~~-----~~~~i~~l~~s 688 (834)
+..... ...|.-.++++.|.+. .+ .+++.-+... .+.+-|......+.... ..+.+.|..+.
T Consensus 84 ia~s~~----i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~ 159 (323)
T KOG0322|consen 84 IAYSAF----ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD 159 (323)
T ss_pred ccCcce----EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence 986432 2234444555555532 11 1111111110 11112221111111111 12335555533
Q ss_pred c-CCC--EEEEEEcCCeEEEEECCCCeEE----------EEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC-
Q 003279 689 P-RLG--RILAAAIENYISILDVETQVCR----------LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS- 753 (834)
Q Consensus 689 p-~g~--~ll~~s~dg~I~iwDl~t~~~~----------~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~- 753 (834)
. ++. .+++|..+|.+.+||+.++..+ .....|..+|.++.|.+.-..=++++ +..+..|++....
T Consensus 160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g 239 (323)
T KOG0322|consen 160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG 239 (323)
T ss_pred ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence 2 222 3556667899999999997433 33446889999999987544444555 7788899887542
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 754 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 754 ~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
....-.++......+..+.+-||++.+++++.|+.|+||+.++..++ .+.-|...|.+++|+|+..++|+++.|+.|.+
T Consensus 240 slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISL 319 (323)
T KOG0322|consen 240 SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISL 319 (323)
T ss_pred cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEe
Confidence 11222334445667889999999999999999999999999999988 67789999999999999999999999999999
Q ss_pred eC
Q 003279 833 WK 834 (834)
Q Consensus 833 Wd 834 (834)
|+
T Consensus 320 Wk 321 (323)
T KOG0322|consen 320 WK 321 (323)
T ss_pred ee
Confidence 96
No 165
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.79 E-value=7.4e-17 Score=178.27 Aligned_cols=266 Identities=10% Similarity=0.183 Sum_probs=183.9
Q ss_pred EEEEeCCCcEEEEeCCC-Ce--EEEEeccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEecCC-CCceeeeeccCCCCeE
Q 003279 567 LATGGHDKKAVLWCTES-FT--VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTEN-PDYSLRTFTGHSTTVM 641 (834)
Q Consensus 567 Lasgs~Dg~I~IWd~~t-~~--~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~s-~~~~i~~~~~h~~~V~ 641 (834)
+++...++.|.+||+.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|+++. +...............
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 33446789999999964 33 445554 345678899999999987765 478999999973 2221111112334577
Q ss_pred EEEEccCCCcEEEEEeCCCcEEEEECCC-Cc---eeeEeecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEE-
Q 003279 642 SLDFHPSKEDLLCSCDNNSEIRYWSINN-GS---CAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRL- 715 (834)
Q Consensus 642 sl~fspdg~~llasgs~Dg~I~lwDl~s-~~---~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~- 715 (834)
.++|+|+++.++++...++.|.+|++.+ +. .+..+........++++|+++++++++. ++.|.+||+++...+.
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 8999999998877776789999999974 32 2233333345788899999999977775 5899999998632221
Q ss_pred ------EEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC-CCceeEEEeecC------CCceEEEEEeCCCCEE
Q 003279 716 ------KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSCT------GNKFHSCVFHPTFPSL 780 (834)
Q Consensus 716 ------~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~-~~~~~i~~~~~~------~~~I~svafspdg~~L 780 (834)
.+. .......+.|+|+|++++++. ++.|.+|++... ...+.+..+... ......+.++|+++++
T Consensus 164 ~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l 242 (330)
T PRK11028 164 QEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL 242 (330)
T ss_pred cCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence 111 233467899999999998877 789999999742 122334333321 1123358899999999
Q ss_pred EEEEc-CCeEEEEECCCCe-EEEeccC---CCCeEEEEEeCCCCEEEEEec-CCcEEEeC
Q 003279 781 LVIGC-YETLELWNMTENK-TLTLSAH---DKLVSSLAASTVNGMVASASH-DKCVKIWK 834 (834)
Q Consensus 781 ~sgs~-dg~I~Iwdl~~~~-~~~l~~h---~~~V~~lafspdg~~LaSgs~-DG~I~IWd 834 (834)
+++.. ++.|.+|++.... ...+..+ ......+.|+|||++|++++. +++|.||+
T Consensus 243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 99865 6799999985432 2222222 235678999999999988775 89999984
No 166
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.79 E-value=1e-17 Score=176.10 Aligned_cols=228 Identities=14% Similarity=0.261 Sum_probs=186.3
Q ss_pred EeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCC------ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCc
Q 003279 589 TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 661 (834)
Q Consensus 589 ~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~s~~------~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 661 (834)
.+.+|+++|.+++|+| +...||+||.|.+|.||.+..+. .++..+.+|...|--+.|+|...++|++++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3568999999999999 56789999999999999987543 3467889999999999999999999999999999
Q ss_pred EEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC-CEEEEEEcCCCCEEEEEe
Q 003279 662 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS 740 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~-~I~sl~~spdg~~Lasgs 740 (834)
|.+||+.+++.+..+.|..-|.++.|+.+|..|++++.|..|+|||.++++.+..-.+|.+ .-..+.|-.+|.++.+|.
T Consensus 156 v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGf 235 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGF 235 (472)
T ss_pred EEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecc
Confidence 9999999999999999999999999999999999999999999999999999988877766 344567778888666664
Q ss_pred ----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEE----EeccCCCCeEE
Q 003279 741 ----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTL----TLSAHDKLVSS 811 (834)
Q Consensus 741 ----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs-~dg~I~Iwdl~~~~~~----~l~~h~~~V~~ 811 (834)
+..+-+||-.+-+....+.++.. .+.|.--.|.++...|+.++ .|+.|+.|.+....+. .......+-..
T Consensus 236 sr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG 314 (472)
T KOG0303|consen 236 SRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRG 314 (472)
T ss_pred ccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccc
Confidence 66899999988766555555554 45677778899988877655 5789999999877643 12233344555
Q ss_pred EEEeCC
Q 003279 812 LAASTV 817 (834)
Q Consensus 812 lafspd 817 (834)
+.|-|.
T Consensus 315 ~g~mPK 320 (472)
T KOG0303|consen 315 MGFMPK 320 (472)
T ss_pred cccccc
Confidence 555554
No 167
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=6e-16 Score=171.03 Aligned_cols=288 Identities=11% Similarity=0.122 Sum_probs=193.4
Q ss_pred EeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCC-CC
Q 003279 507 DDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTE-SF 584 (834)
Q Consensus 507 ~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs-~Dg~I~IWd~~-t~ 584 (834)
.+...++.|.+|..... + .+..+..+. +.+....++++|++++|++++ .++.|.+|++. ++
T Consensus 6 ~~~~~~~~I~~~~~~~~--g--------------~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g 68 (330)
T PRK11028 6 IASPESQQIHVWNLNHE--G--------------ALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG 68 (330)
T ss_pred EEcCCCCCEEEEEECCC--C--------------ceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC
Confidence 33456788888855321 1 122334443 234577899999999987765 47899999986 33
Q ss_pred eE--EEEeccCCCCeEEEEECCCCCEEEEEeC-CCeEEEEecCCCCc---eeeeeccCCCCeEEEEEccCCCcEEEEEeC
Q 003279 585 TV--KSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 658 (834)
Q Consensus 585 ~~--~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~s~~~---~i~~~~~h~~~V~sl~fspdg~~llasgs~ 658 (834)
+. +.... ..+....++|+|++++|++++. ++.|.+|++++... .+..+. +.....+++++|+++.++++...
T Consensus 69 ~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~ 146 (330)
T PRK11028 69 ALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLK 146 (330)
T ss_pred ceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCC
Confidence 32 22222 3345678999999999888875 88999999975332 122222 33456788999999988888888
Q ss_pred CCcEEEEECCCCceee-------EeecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCC--C--eEEEEEeCC------
Q 003279 659 NSEIRYWSINNGSCAG-------VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVET--Q--VCRLKLQGH------ 720 (834)
Q Consensus 659 Dg~I~lwDl~s~~~i~-------~~~~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t--~--~~~~~l~~h------ 720 (834)
++.|.+||+.+...+. ..........+.|+|++++++++.. ++.|.+||++. + +.+..+..+
T Consensus 147 ~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~ 226 (330)
T PRK11028 147 EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSD 226 (330)
T ss_pred CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCC
Confidence 8999999998633221 1223456788999999999988887 89999999973 3 333333322
Q ss_pred CCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCC-CceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECC-
Q 003279 721 KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS-KGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMT- 795 (834)
Q Consensus 721 ~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~-~~~~i~~~~~~~~~I~svafspdg~~L~sgs~-dg~I~Iwdl~- 795 (834)
......+.|+|++++|+++. ++.|.+|++.... ..+.+..+.. ......+.|+|+|++|+++.. +++|.+|+++
T Consensus 227 ~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 227 TRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 12334688999999999886 6799999996543 2223333332 234567899999999998876 7799999874
Q ss_pred -CCeEEE--eccCCCCeEEEEE
Q 003279 796 -ENKTLT--LSAHDKLVSSLAA 814 (834)
Q Consensus 796 -~~~~~~--l~~h~~~V~~laf 814 (834)
++.... .........|++|
T Consensus 306 ~~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 306 ETGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred CCCcEEEccccccCCCceEEEE
Confidence 344331 1122444555554
No 168
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=2.4e-18 Score=188.23 Aligned_cols=254 Identities=19% Similarity=0.283 Sum_probs=198.7
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC--------CCeEEEEeccCCCCeEEEEECCCCCEEEEEe
Q 003279 542 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--------SFTVKSTLEEHTQWITDVRFSPSLSRLATSS 613 (834)
Q Consensus 542 ~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~--------t~~~~~~l~~h~~~I~~l~fspdg~~Latgs 613 (834)
+..-.++..|.+.|..+.|.+-...|++++.||+|.+|++. ..+++.+|.+|.++|.|+++.+++..+++|+
T Consensus 284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg 363 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG 363 (577)
T ss_pred cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence 33344888999999999999999999999999999999983 2467789999999999999999999999999
Q ss_pred CCCeEEEEecCC---------CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec---CCC
Q 003279 614 ADRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSG 681 (834)
Q Consensus 614 ~Dg~I~IWDl~s---------~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~---~~~ 681 (834)
.||+|++|++.. .......+.||.+.|+.++++..... |++|+.||++++|+...... .+|.. ++-
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~-Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR-LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY 441 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc-eeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence 999999996542 11234678899999999999998665 56999999999999887665 33322 233
Q ss_pred eeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEeC-------CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003279 682 ATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG-------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 752 (834)
Q Consensus 682 i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t~~~~~~l~~-------h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 752 (834)
..++.+.... ...++...-+.-.++|.+....+..+.. ....+.-+.++|.+.+.+++. |+.|+++|..++
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 4455554433 2233333334444555555444443332 123467788999999888888 899999999998
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 753 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 753 ~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
..++....|...++++++.|+|.+|++++.|+.|++|.+....++
T Consensus 522 ---~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 522 ---KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred ---ccchheeeccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence 788899999999999999999999999999999999999776655
No 169
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=4.6e-18 Score=176.11 Aligned_cols=266 Identities=17% Similarity=0.301 Sum_probs=191.3
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECC--CCCEEEEEeCCCeEEEEecCCCCce-eeeeccCC-CCe
Q 003279 565 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYS-LRTFTGHS-TTV 640 (834)
Q Consensus 565 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~IWDl~s~~~~-i~~~~~h~-~~V 640 (834)
..+|++...|.|++||..++..+..++++...++.++|.. ....+.+|+.||+|++||++..... ...+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688999999999999999999999999999999999987 4678999999999999999975542 33444554 456
Q ss_pred EEEEEccCCCcEEEEEe----CCCcEEEEECCCCce-eeEee--cCCCeeEEEEecC-CCEEEEEEcCCeEEEEECCCCe
Q 003279 641 MSLDFHPSKEDLLCSCD----NNSEIRYWSINNGSC-AGVFK--CQSGATQMRFQPR-LGRILAAAIENYISILDVETQV 712 (834)
Q Consensus 641 ~sl~fspdg~~llasgs----~Dg~I~lwDl~s~~~-i~~~~--~~~~i~~l~~sp~-g~~ll~~s~dg~I~iwDl~t~~ 712 (834)
.|++..-. ..++++|. .+-.|.+||++..+. +..+. |...|++++|+|. .+.|++|+.||.|.+||++...
T Consensus 121 ~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccCc-CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 66666544 44776664 366899999998765 55443 5788999999995 4678889999999999998652
Q ss_pred ---EEEEEeCCCCCEEEEEEcCCC--CEEEEEeCCeEEEEEcCCCCCceeEEEeecC------------CCceEEEEEeC
Q 003279 713 ---CRLKLQGHKNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKGECIHELSCT------------GNKFHSCVFHP 775 (834)
Q Consensus 713 ---~~~~l~~h~~~I~sl~~spdg--~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~------------~~~I~svafsp 775 (834)
.+.....|...|.++.|..++ ++++....++..+|+++.+.. ...+... ...+..+....
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~---~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~ 276 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE---ETWLENPDVSADDLRKEDNCDYVINEHSPG 276 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh---hhcccCccchhhhHHhhhhhhheeecccCC
Confidence 222333477889999999887 544444599999999988742 1111111 01122222223
Q ss_pred CCCEEEEEEc-CCeEEEEEC---CCCeEE----Eec-cCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 776 TFPSLLVIGC-YETLELWNM---TENKTL----TLS-AHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 776 dg~~L~sgs~-dg~I~Iwdl---~~~~~~----~l~-~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+....++++. .+...++-+ .++... .+. +|...|+++.|...+.++.||+.||.|.+|+
T Consensus 277 ~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 277 DKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred CcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 4444555444 455544433 333322 333 4778899999998899999999999999995
No 170
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.77 E-value=5.1e-19 Score=199.41 Aligned_cols=275 Identities=18% Similarity=0.288 Sum_probs=219.4
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
+.++.|.+|.+.|+|+.|...|.++++|+.|..|+||..++..++..+.+|.+.|++++.+.+..+++++|.|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceee-----EeecCCCeeEEEEecCCCEEEEE
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-----VFKCQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~-----~~~~~~~i~~l~~sp~g~~ll~~ 697 (834)
+..+. ++..+.+|++.|++|+|+|-. +.+.||++++||.+-.-.+. .+.....+.++.|...+..++++
T Consensus 261 l~~~~-pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 261 LPDGA-PVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred cCCCc-hHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence 99755 588999999999999999863 67789999999998211111 12234457777888888889999
Q ss_pred EcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003279 698 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 775 (834)
Q Consensus 698 s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafsp 775 (834)
+.|+.-..|...... .+...+.-+.++.+- .+.++.- +..+.+|++.++ ...+.+.+|...+..+.+||
T Consensus 335 s~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---~l~H~l~ghsd~~yvLd~Hp 405 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---QLLHNLMGHSDEVYVLDVHP 405 (1113)
T ss_pred cCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccc---hhhhhhcccccceeeeeecC
Confidence 999887777654321 122222222222232 2333333 779999999988 67788889999999999999
Q ss_pred CCCEEE-EEEcCCeEEEEECCCCeEEE--eccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 776 TFPSLL-VIGCYETLELWNMTENKTLT--LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 776 dg~~L~-sgs~dg~I~Iwdl~~~~~~~--l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
-...++ .++.||.+.|||+-.+.++. ..+ .+.+...+||+||..++....-|.+.|.
T Consensus 406 fn~ri~msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 406 FNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred CCcHhhhhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEe
Confidence 887665 67889999999999888773 334 4567778999999988887777877764
No 171
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=9.1e-17 Score=185.39 Aligned_cols=281 Identities=16% Similarity=0.235 Sum_probs=209.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccC---CCCeEEEEECC--CCCEEEEEeCCCeEEEEecCC
Q 003279 551 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH---TQWITDVRFSP--SLSRLATSSADRTVRVWDTEN 625 (834)
Q Consensus 551 H~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h---~~~I~~l~fsp--dg~~Latgs~Dg~I~IWDl~s 625 (834)
....-..+.|+|-...++++...-.|+|||.+.++....|..+ ...|+.+++-. |..++++|+.||.|+||+-..
T Consensus 1063 n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 3344567889998889999987789999999999998777543 35688888876 567899999999999997543
Q ss_pred CC----ceeeeecc-------CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCC--eeEEEEe-cCC
Q 003279 626 PD----YSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQ-PRL 691 (834)
Q Consensus 626 ~~----~~i~~~~~-------h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~--i~~l~~s-p~g 691 (834)
.. ..+..+.+ ..+.-.-++|.....+++++|+ -..|+|||.....++..+..... ++++.-+ ..|
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCC
Confidence 22 11222211 1122244678777776775554 78999999999888887775433 5554433 246
Q ss_pred CEEEEEEcCCeEEEEECCCC---eEEEEEeCCCCC--EEEEEEcCCCCE-EEEEe-CCeEEEEEcCCCCCceeEEEeecC
Q 003279 692 GRILAAAIENYISILDVETQ---VCRLKLQGHKNQ--VHSVCWNTSGEY-LASVS-DELVRVWSIGSGSKGECIHELSCT 764 (834)
Q Consensus 692 ~~ll~~s~dg~I~iwDl~t~---~~~~~l~~h~~~--I~sl~~spdg~~-Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~ 764 (834)
+.|++|..||.|++||.+.. ..+...+.|... |..+.+.+.|.- |++++ ||.|++||++.... .....+..|
T Consensus 1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e~~~~iv~~ 1300 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-ETFLTIVAH 1300 (1387)
T ss_pred ceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-cccceeeec
Confidence 88999999999999999865 346667778887 999999886654 77777 99999999998532 222222222
Q ss_pred ---CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEecc-------CCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 765 ---GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-------HDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 765 ---~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~-------h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++..+++..|+..+.|++|+. +.|+||++.......+.. ..+.+.|++|+|..-++|+|+.|.+|.||.
T Consensus 1301 ~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred cccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 235899999999998888888 899999998766553332 245689999999999999999999999983
No 172
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.76 E-value=1.7e-16 Score=163.28 Aligned_cols=272 Identities=18% Similarity=0.252 Sum_probs=200.5
Q ss_pred eEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEec-CCCCCeEEEEEc-------CCCCEEEEEeCCCcE
Q 003279 505 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFS-------PDGKLLATGGHDKKA 576 (834)
Q Consensus 505 ~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~-gH~~~V~sl~fS-------pdg~~Lasgs~Dg~I 576 (834)
.+.+-+.|..+++|..+-+.-..+.- -...+.....++ -....|...+|- |+..++|+.+.|.-|
T Consensus 63 ciL~~sedn~l~~~nlP~dlys~~~~-------~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PI 135 (406)
T KOG2919|consen 63 CILSLSEDNCLNCWNLPFDLYSKKAD-------GPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPI 135 (406)
T ss_pred eEEeecccCeeeEEecChhhcccCCC-------CccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCce
Confidence 45566788889999655443221110 111111111121 123457888875 577899999999999
Q ss_pred EEEeCCCCeEEEEecc--CCCC---eEEEEECCCCCEEEEEeCCCeEEEEecCCCC-c-eeeeec-----cCCCCeEEEE
Q 003279 577 VLWCTESFTVKSTLEE--HTQW---ITDVRFSPSLSRLATSSADRTVRVWDTENPD-Y-SLRTFT-----GHSTTVMSLD 644 (834)
Q Consensus 577 ~IWd~~t~~~~~~l~~--h~~~---I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~-~-~i~~~~-----~h~~~V~sl~ 644 (834)
.+||.-+|+....+.. |-+. ..+++|+|||..|++| ....|++||+..+. . .+.... +..+-|.|++
T Consensus 136 h~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a 214 (406)
T KOG2919|consen 136 HLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFA 214 (406)
T ss_pred eeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeee
Confidence 9999999998877653 3333 4689999999999887 67799999994332 2 222222 2367899999
Q ss_pred EccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCC-eEEEEEeCCC
Q 003279 645 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI-ENYISILDVETQ-VCRLKLQGHK 721 (834)
Q Consensus 645 fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~-~~~~~l~~h~ 721 (834)
|+|.....++.++....+-||.-....++..+. +.++|+.++|.++|+.|++|+. +..|..||++.- .++..+..|.
T Consensus 215 ~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv 294 (406)
T KOG2919|consen 215 FSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHV 294 (406)
T ss_pred ccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhc
Confidence 999988899999999999999888887777665 4678999999999999999997 689999999864 6677777665
Q ss_pred C-CEEE--EEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003279 722 N-QVHS--VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 786 (834)
Q Consensus 722 ~-~I~s--l~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d 786 (834)
. .--. +...|++++|++|+ ||.|++||+.... ..+..+..+...++.++++|--+.+++++..
T Consensus 295 ~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g--n~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 295 GDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG--NEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cCccceEEEecCCCCceeeccCCCccEEEEecCCCC--CcccccccccccccceecCcccceeeeccCc
Confidence 5 2223 45578999999998 9999999998732 4566777788899999999998866666654
No 173
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=4.6e-18 Score=182.79 Aligned_cols=292 Identities=20% Similarity=0.310 Sum_probs=228.5
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-ccCCCCeEEEEECCC--CCEEEEEeCCCeE
Q 003279 542 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPS--LSRLATSSADRTV 618 (834)
Q Consensus 542 ~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l-~~h~~~I~~l~fspd--g~~Latgs~Dg~I 618 (834)
+.....|..|.+.|..|.|+..|..|++|+.|..|.+||...++.+..+ .+|...|.-..|-|. ...|++++.||.|
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 3445678899999999999999999999999999999999998887666 579999998889883 5679999999999
Q ss_pred EEEecCCCCce--eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec----CC---CeeEEEEec
Q 003279 619 RVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QS---GATQMRFQP 689 (834)
Q Consensus 619 ~IWDl~s~~~~--i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~----~~---~i~~l~~sp 689 (834)
++=.+...++. ...+..|.+.|..++..|+..+-|.+|+.|+.+.-+|++.+.....+.+ .. ....++..|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 99887654443 3456679999999999999999999999999999999998876655543 22 467788888
Q ss_pred CCC-EEEEEEcCCeEEEEECCCCeE------EEEEe------CCCCCEEEEEEcCCC-CEEEEEeCCeEEEEEcCCCCC-
Q 003279 690 RLG-RILAAAIENYISILDVETQVC------RLKLQ------GHKNQVHSVCWNTSG-EYLASVSDELVRVWSIGSGSK- 754 (834)
Q Consensus 690 ~g~-~ll~~s~dg~I~iwDl~t~~~------~~~l~------~h~~~I~sl~~spdg-~~LasgsDg~I~IwDl~s~~~- 754 (834)
... .+++++.|-.+++||.+.-.. +..+. ...-.|+|++|+.++ .+|++-.|..|++|.-..+.-
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 665 688889999999999875321 22222 223478999999655 566666688999995433211
Q ss_pred -c-------eeEE-EeecCCC--ceEEEE-EeCCCCEEEEEEcCCeEEEEECCCCeEEE-eccCCCCeEEEEEeCCCCEE
Q 003279 755 -G-------ECIH-ELSCTGN--KFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMV 821 (834)
Q Consensus 755 -~-------~~i~-~~~~~~~--~I~sva-fspdg~~L~sgs~dg~I~Iwdl~~~~~~~-l~~h~~~V~~lafspdg~~L 821 (834)
. ..+. .+++|.+ .|..+- |-|...|+++|+.-|.|.||+-++++++. +.+-...|+||.-+|--.+|
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvL 451 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVL 451 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchh
Confidence 0 1112 2555543 355554 56788999999999999999999999884 34444589999999999999
Q ss_pred EEEecCCcEEEe
Q 003279 822 ASASHDKCVKIW 833 (834)
Q Consensus 822 aSgs~DG~I~IW 833 (834)
|+++-|..|+||
T Consensus 452 AsSGid~DVKIW 463 (559)
T KOG1334|consen 452 ASSGIDHDVKIW 463 (559)
T ss_pred hccCCccceeee
Confidence 999999999999
No 174
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=6.1e-16 Score=158.41 Aligned_cols=250 Identities=20% Similarity=0.353 Sum_probs=186.5
Q ss_pred cccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcC--CCCEEEEEeCCCc
Q 003279 498 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKK 575 (834)
Q Consensus 498 ~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSp--dg~~Lasgs~Dg~ 575 (834)
.++...+.+++++.|..+++|...++ ..++......+.|.+.|..|.|.+ -|..+|+++.|++
T Consensus 20 s~D~~GRRmAtCSsDq~vkI~d~~~~---------------s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 20 SFDFYGRRMATCSSDQTVKIWDSTSD---------------SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT 84 (361)
T ss_pred eecccCceeeeccCCCcEEEEeccCC---------------CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence 34556689999999999999986433 224555667789999999999976 5889999999999
Q ss_pred EEEEeCC---------CCeEEEEeccCCCCeEEEEECCC--CCEEEEEeCCCeEEEEecCCCCce------------eee
Q 003279 576 AVLWCTE---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYS------------LRT 632 (834)
Q Consensus 576 I~IWd~~---------t~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~IWDl~s~~~~------------i~~ 632 (834)
|.||.-. ......++......|++|.|.|. |-.||+++.||+||||+.-..... +..
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~p 164 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDP 164 (361)
T ss_pred eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCC
Confidence 9999631 22344667778889999999994 778999999999999987653210 111
Q ss_pred eccCCCCeEEEEEccCC--CcEEEEEeCC-----CcEEEEECCCC--ceee--Ee-ecCCCeeEEEEecCC----CEEEE
Q 003279 633 FTGHSTTVMSLDFHPSK--EDLLCSCDNN-----SEIRYWSINNG--SCAG--VF-KCQSGATQMRFQPRL----GRILA 696 (834)
Q Consensus 633 ~~~h~~~V~sl~fspdg--~~llasgs~D-----g~I~lwDl~s~--~~i~--~~-~~~~~i~~l~~sp~g----~~ll~ 696 (834)
...+.....|+.|+|.. ..+|+.|+.+ +.++||....+ +... .+ .+..+|+.++|.|.- ..|++
T Consensus 165 p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 165 PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV 244 (361)
T ss_pred cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE
Confidence 22466778899998742 3467677654 47888876543 2222 22 346789999999963 34778
Q ss_pred EEcCCeEEEEECCCC--------------------eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc
Q 003279 697 AAIENYISILDVETQ--------------------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG 755 (834)
Q Consensus 697 ~s~dg~I~iwDl~t~--------------------~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~ 755 (834)
++.|| |+||.++.. +.+..+.+|.+.|..+.|+-.|..|++.+ ||+|++|...-....
T Consensus 245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~ 323 (361)
T KOG2445|consen 245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLW 323 (361)
T ss_pred eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhh
Confidence 88888 999998731 23455778999999999999999999988 999999987665555
Q ss_pred eeEEEeec
Q 003279 756 ECIHELSC 763 (834)
Q Consensus 756 ~~i~~~~~ 763 (834)
+|+..+..
T Consensus 324 kC~sv~~~ 331 (361)
T KOG2445|consen 324 KCTSVLKA 331 (361)
T ss_pred eeeeEEec
Confidence 66665554
No 175
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=4.9e-17 Score=178.02 Aligned_cols=255 Identities=18% Similarity=0.194 Sum_probs=193.1
Q ss_pred CCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003279 496 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 575 (834)
Q Consensus 496 ~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~ 575 (834)
.-.+......+++++.|+.+++|..... ...+...+..+.+|++|.++|.|+++.+++..+++|+.||+
T Consensus 299 ~l~~~~sep~lit~sed~~lk~WnLqk~-----------~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 299 ALAFHPSEPVLITASEDGTLKLWNLQKA-----------KKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred hhhcCCCCCeEEEeccccchhhhhhccc-----------CCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 3445667788999999999999976331 12345567889999999999999999999999999999999
Q ss_pred EEEEeCCC----------CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEE
Q 003279 576 AVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 645 (834)
Q Consensus 576 I~IWd~~t----------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~f 645 (834)
|+.|++.. ......+.||++.|+.++++.....|++|+.||+|++|+......+........+.-.++++
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDR 447 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEee
Confidence 99995431 12335678999999999999999999999999999999988655422222222344556666
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCCCceeeEeec--------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 003279 646 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 717 (834)
Q Consensus 646 spdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~--------~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l 717 (834)
......+.++...-+.--+++++....+..+.. ...+..+.++|.....+++..++.|+++|..++..+...
T Consensus 448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~ 527 (577)
T KOG0642|consen 448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM 527 (577)
T ss_pred ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe
Confidence 544322333333333334444454444444432 134677889999999999999999999999999999999
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC
Q 003279 718 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 764 (834)
Q Consensus 718 ~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~ 764 (834)
..|...++++++.|+|-+|.+++ |+.|++|.+... .++.....|
T Consensus 528 ~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k---~~~~es~~~ 572 (577)
T KOG0642|consen 528 VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK---TCVLESTAH 572 (577)
T ss_pred eeccceecceeecCCCceEEeecCCceeehhhccch---heeeccccc
Confidence 99999999999999999999999 999999998765 555554443
No 176
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=3.5e-16 Score=158.95 Aligned_cols=241 Identities=19% Similarity=0.326 Sum_probs=180.7
Q ss_pred cCCCCCeEEEEEcCCCC-----EEEEEeCCCcEEEEeCCC--CeEE--EEe-----ccCCCCeEEEEECC-CCCEEEEEe
Q 003279 549 PASTSKVESCHFSPDGK-----LLATGGHDKKAVLWCTES--FTVK--STL-----EEHTQWITDVRFSP-SLSRLATSS 613 (834)
Q Consensus 549 ~gH~~~V~sl~fSpdg~-----~Lasgs~Dg~I~IWd~~t--~~~~--~~l-----~~h~~~I~~l~fsp-dg~~Latgs 613 (834)
..|.-+++.+-|.|+.+ +|||++ ..+++|.+.. .+.. ..+ ..+..+++++.|+. +-++|.++|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 36888999999999863 566665 4899998873 2211 111 35678899999987 678999999
Q ss_pred CCCeEEEEecCCCC--ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec----CCCeeEEEE
Q 003279 614 ADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGATQMRF 687 (834)
Q Consensus 614 ~Dg~I~IWDl~s~~--~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~----~~~i~~l~~ 687 (834)
-|-++.|||++++. .....+..|...|..|+|...+..+|++++.||.|++||++..+-...+.. ..+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 99999999999852 245677889999999999999899999999999999999997654333322 345777888
Q ss_pred ecCC-CEEEEEEcC-CeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCC---ceeEE
Q 003279 688 QPRL-GRILAAAIE-NYISILDVETQ-VCRLKLQGHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSK---GECIH 759 (834)
Q Consensus 688 sp~g-~~ll~~s~d-g~I~iwDl~t~-~~~~~l~~h~~~I~sl~~spd-g~~Lasgs-Dg~I~IwDl~s~~~---~~~i~ 759 (834)
++.. +++++...| ..|.|.|++.. .++..+.+|.+.|+.|+|.|. ...|++++ |..+.|||+..... ..++.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 8754 445555554 68999999975 788899999999999999995 46788877 77999999976422 12222
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003279 760 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 792 (834)
Q Consensus 760 ~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iw 792 (834)
.+. ....|+.+.|++...--+.++.++++.+.
T Consensus 331 ay~-a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 331 AYT-AGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred hhh-ccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 333 57789999999765444444444555443
No 177
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.73 E-value=6.3e-17 Score=166.83 Aligned_cols=242 Identities=19% Similarity=0.280 Sum_probs=183.4
Q ss_pred CCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecC
Q 003279 550 ASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 550 gH~~~V~sl~fSpd----g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~ 624 (834)
.|......|+|+-| ..+||.|+.-|.|+|.|+.++++...+.+|...|+.|.|.|+ ..+|+++|.|..|++|++.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 36777888888764 347999999999999999999999999999999999999996 4689999999999999999
Q ss_pred CCCceeee---eccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee------------------------
Q 003279 625 NPDYSLRT---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------------------------ 677 (834)
Q Consensus 625 s~~~~i~~---~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~------------------------ 677 (834)
+..+ +.. +.+|.+.|.+++|++++. .+++|+.|..|++|++...+....+.
T Consensus 167 ~~~C-v~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 167 TDVC-VAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred CCeE-EEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 8654 444 457999999999999988 66799999999999998432111110
Q ss_pred -----cCCCeeEEEEecCCCEEEEEEcCCeEEEEECC-CCe-------------EEEEEeCCCCCEEE--EEEcCCCCEE
Q 003279 678 -----CQSGATQMRFQPRLGRILAAAIENYISILDVE-TQV-------------CRLKLQGHKNQVHS--VCWNTSGEYL 736 (834)
Q Consensus 678 -----~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~-t~~-------------~~~~l~~h~~~I~s--l~~spdg~~L 736 (834)
|...|.|+.|. |+++++-+.++.|..|... -.+ ...++.-....|.- .+|++-.+.|
T Consensus 245 st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 01112333332 4678888889999999772 111 12223323334444 4567778999
Q ss_pred EEEe-CCeEEEEEcCCCCCceeE-EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003279 737 ASVS-DELVRVWSIGSGSKGECI-HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 737 asgs-Dg~I~IwDl~s~~~~~~i-~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
|.|. .|.|++||++..+...+. .........|...+|+.|+..|+..+.|+.|.-||.-
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999 899999999987653222 2223345678999999999999999999999999853
No 178
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.72 E-value=2.2e-16 Score=166.11 Aligned_cols=206 Identities=19% Similarity=0.304 Sum_probs=165.9
Q ss_pred EEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCC-------eEEEEeccCCCCeEEEEECCC-CCEEEEEeC
Q 003279 544 EFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPS-LSRLATSSA 614 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~IWd~~t~-------~~~~~l~~h~~~I~~l~fspd-g~~Latgs~ 614 (834)
.+-.+.||+++|..++|+| +...||+|++|.+|.||.+... +++..+.+|...|--+.|+|. .+.|++++.
T Consensus 73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC
Confidence 3456789999999999999 5568999999999999988643 456788999999999999995 568999999
Q ss_pred CCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCC--CeeEEEEecCCC
Q 003279 615 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLG 692 (834)
Q Consensus 615 Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~--~i~~l~~sp~g~ 692 (834)
|.+|.+||+.++.. +.++. |.+-|++++|+.+|. ++++.+.|+.|+|||.++++.+..-..+. ....+.|..++.
T Consensus 153 Dn~v~iWnv~tgea-li~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~ 229 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEA-LITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK 229 (472)
T ss_pred CceEEEEeccCCce-eeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc
Confidence 99999999999875 34444 999999999999987 77799999999999999999988775433 355677888888
Q ss_pred EEEEEEc---CCeEEEEECCCCe---EEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCC
Q 003279 693 RILAAAI---ENYISILDVETQV---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS 753 (834)
Q Consensus 693 ~ll~~s~---dg~I~iwDl~t~~---~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~ 753 (834)
.+-+|.. +..+-+||..+-. ...++. ..+.|.---|++|..+++.++ |+.|+.|.+....
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 4444432 5789999977643 233333 455677778899999888777 9999999998763
No 179
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.72 E-value=1.6e-15 Score=174.09 Aligned_cols=258 Identities=18% Similarity=0.238 Sum_probs=189.1
Q ss_pred CcEEEEeCCCC-eEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCCce-----eeeeccCCCCeEEEEEc
Q 003279 574 KKAVLWCTESF-TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYS-----LRTFTGHSTTVMSLDFH 646 (834)
Q Consensus 574 g~I~IWd~~t~-~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~s~~~~-----i~~~~~h~~~V~sl~fs 646 (834)
+.+.||+++.. .+...+ .-...|.|++|+| +..+|+.|+.+|.|.+||+...... -.....|..+|+.+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 47999999876 333444 4567899999999 5678888999999999999876542 12334688999999997
Q ss_pred cCCCc-EEEEEeCCCcEEEEECCCCcee------eEe-------ecCCCeeEEEEecC-CCEEEEEEcCCeEEEEECCCC
Q 003279 647 PSKED-LLCSCDNNSEIRYWSINNGSCA------GVF-------KCQSGATQMRFQPR-LGRILAAAIENYISILDVETQ 711 (834)
Q Consensus 647 pdg~~-llasgs~Dg~I~lwDl~s~~~i------~~~-------~~~~~i~~l~~sp~-g~~ll~~s~dg~I~iwDl~t~ 711 (834)
.+... =|++++.||.|..|+++.-... ... .....++++.|.+. -..|++|+.+|.|..-+....
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 65433 2557888999999998754321 111 12345788999884 456888888898887443322
Q ss_pred ---e-----EEEEEeCCCCCEEEEEEcCCCCEE-EEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE-
Q 003279 712 ---V-----CRLKLQGHKNQVHSVCWNTSGEYL-ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL- 781 (834)
Q Consensus 712 ---~-----~~~~l~~h~~~I~sl~~spdg~~L-asgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~- 781 (834)
. ....+..|.++|+++.++|-+..+ .+++|.+|+||...... .++..+..+...+++++|||....++
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~--~Pl~~~~~~~~~v~~vaWSptrpavF~ 458 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA--SPLLSLDSSPDYVTDVAWSPTRPAVFA 458 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC--CcchhhhhccceeeeeEEcCcCceEEE
Confidence 1 123455688999999999976544 44559999999987321 56666777777899999999986554
Q ss_pred EEEcCCeEEEEECCCCeE--E-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 782 VIGCYETLELWNMTENKT--L-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 782 sgs~dg~I~Iwdl~~~~~--~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++..+|.|.|||+..... + ....+....+.+.|++.|++|++|...|.|++|+
T Consensus 459 ~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred EEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 556699999999965432 2 4444567778889999999999999999999985
No 180
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.72 E-value=9.6e-16 Score=179.75 Aligned_cols=292 Identities=18% Similarity=0.226 Sum_probs=208.5
Q ss_pred eEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCC-------CeEEEEeccCCCCeEEEEECCCCCEEEEEeC
Q 003279 543 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSA 614 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~IWd~~t-------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~ 614 (834)
..+..+..|...|..++.+++. .++++|+.||+|++|+... .+...++.-....+.++.+.+.+..+|+++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 4577888999999999988755 8999999999999999753 2333444446778999999999999999999
Q ss_pred CCeEEEEecCCCCce------eeeeccC-CCCeEE-EEEccCCC-cEEEEEeCCCcEEEEECCCCceeeEeec---CCCe
Q 003279 615 DRTVRVWDTENPDYS------LRTFTGH-STTVMS-LDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGA 682 (834)
Q Consensus 615 Dg~I~IWDl~s~~~~------i~~~~~h-~~~V~s-l~fspdg~-~llasgs~Dg~I~lwDl~s~~~i~~~~~---~~~i 682 (834)
||.|++.+++..... .+....+ .+.+.+ -+|..... .+++.+...+.|..||+++......++. ++-|
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 999999999852111 1111112 233333 34443333 3777788889999999998877766654 5779
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC-CCCCEEEEEEcCC---CCEEEEEe---CCeEEEEEcCCCCCc
Q 003279 683 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-HKNQVHSVCWNTS---GEYLASVS---DELVRVWSIGSGSKG 755 (834)
Q Consensus 683 ~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~-h~~~I~sl~~spd---g~~Lasgs---Dg~I~IwDl~s~~~~ 755 (834)
++++.+|.+.+++.|+..|.+.+||++-+.++..+.. +..+|..++.+|- ....++++ .+.|.+|++.++...
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcce
Confidence 9999999999999999999999999999888877652 4567887777663 34555444 568999999988321
Q ss_pred eeEEEe----------e------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-------------------
Q 003279 756 ECIHEL----------S------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL------------------- 800 (834)
Q Consensus 756 ~~i~~~----------~------~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~------------------- 800 (834)
..+..- . .+.-....+++...+.++++|+.|..|+.||....+..
T Consensus 1279 ~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~ 1358 (1431)
T KOG1240|consen 1279 TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD 1358 (1431)
T ss_pred EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhcc
Confidence 111111 0 01112234455556678999999999999997432110
Q ss_pred --------------------------------------EeccCCCCeEEEEEeCCC-CEEEEEecCCcEEEeC
Q 003279 801 --------------------------------------TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 834 (834)
Q Consensus 801 --------------------------------------~l~~h~~~V~~lafspdg-~~LaSgs~DG~I~IWd 834 (834)
.-..|...|+++++.... .+|++++.||.|+||+
T Consensus 1359 ~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1359 LSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 011255667777766544 4899999999999996
No 181
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.72 E-value=3.8e-16 Score=158.48 Aligned_cols=270 Identities=20% Similarity=0.280 Sum_probs=190.0
Q ss_pred EEEecCCCCCeEEEEEcC-CCCEEEEEeCC-------CcEEEEeCCC---------CeEEEEec-cCCCCeEEEEECCCC
Q 003279 545 FQLIPASTSKVESCHFSP-DGKLLATGGHD-------KKAVLWCTES---------FTVKSTLE-EHTQWITDVRFSPSL 606 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSp-dg~~Lasgs~D-------g~I~IWd~~t---------~~~~~~l~-~h~~~I~~l~fspdg 606 (834)
-.+|..|.+.|+.++-+| |.++|+++..+ ..+.||.+.. .+++..+. .+-+.|.|+.|.|++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 456778999999999999 55667766442 3578998763 23344443 455689999999999
Q ss_pred CEEEEEeCCCeEEEEecCCCCceeeee-----ccCCCCeEEEEEcc--CCCcEEEEEeCCCcEEEEECCCCceeeEeec-
Q 003279 607 SRLATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFKC- 678 (834)
Q Consensus 607 ~~Latgs~Dg~I~IWDl~s~~~~i~~~-----~~h~~~V~sl~fsp--dg~~llasgs~Dg~I~lwDl~s~~~i~~~~~- 678 (834)
..|++-. |..|.+|++......+..+ ..+....++-+|+| ++. .+++. .|+++..||+++.++...+..
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn-qv~tt-~d~tl~~~D~RT~~~~~sI~dA 212 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN-QVATT-SDSTLQFWDLRTMKKNNSIEDA 212 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc-eEEEe-CCCcEEEEEccchhhhcchhhh
Confidence 9988875 8899999998765422222 23566788889998 444 44343 489999999999888777763
Q ss_pred -CCCeeEEEEecCCCE-EEEEEcCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCC
Q 003279 679 -QSGATQMRFQPRLGR-ILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGS 753 (834)
Q Consensus 679 -~~~i~~l~~sp~g~~-ll~~s~dg~I~iwDl~t~-~~~~~l~~h~~~I~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~ 753 (834)
...+..+.|+|+..+ |++++.||.|+|||.+.. .++.++.+|..+|.++.|+|.. .+|.+++ |..|.+|-..+-.
T Consensus 213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svS 292 (370)
T KOG1007|consen 213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVS 292 (370)
T ss_pred hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccc
Confidence 456999999998765 556667899999999864 7888999999999999999964 4556666 9999999765532
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCC-EEEEEecCCcEEE
Q 003279 754 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKI 832 (834)
Q Consensus 754 ~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~-~LaSgs~DG~I~I 832 (834)
... .+.|..+....-.......++ -+..|.+.++..|+..|.+++|+.-.. ++|+-+.||.|.|
T Consensus 293 SE~-------------qi~~~~dese~e~~dseer~k--pL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 293 SEQ-------------QIEFEDDESESEDEDSEERVK--PLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred ccc-------------ccccccccccCcchhhHHhcc--cccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 111 111111110000000011222 344555567789999999999997665 6788899999876
No 182
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=4.2e-15 Score=147.73 Aligned_cols=268 Identities=15% Similarity=0.166 Sum_probs=192.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCC----------CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEec
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 623 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t----------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 623 (834)
.|.+-+|+|.+++|+.|..+|.|.++.+.+ ...+....+|.++|+.++|. ..+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 367778999999999999999999998753 23344557999999999998 34666664 599999987
Q ss_pred CCCCcee-------eeeccC-----CCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCC-eeEEEEecC
Q 003279 624 ENPDYSL-------RTFTGH-----STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPR 690 (834)
Q Consensus 624 ~s~~~~i-------~~~~~h-----~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~-i~~l~~sp~ 690 (834)
....... .....| --.|+++...|..+.+|.+| .|+.++.||+++|+..++++.+.. +.++.--..
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 6432210 111112 24688999999877777555 699999999999999999997554 777777666
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEeCC----------CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEE
Q 003279 691 LGRILAAAIENYISILDVETQVCRLKLQGH----------KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE 760 (834)
Q Consensus 691 g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h----------~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~ 760 (834)
...+++|++||++++||.++++++..+... ..+|-+++. +..+|++|....+.+|.+++. ++...
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrss---e~t~v 242 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSS---ESTCV 242 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCceeEEeccCC---CceEE
Confidence 788999999999999999999998877532 124555554 567899888889999999987 44444
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCC-CCEEEEEecCCcEEEe
Q 003279 761 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV-NGMVASASHDKCVKIW 833 (834)
Q Consensus 761 ~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspd-g~~LaSgs~DG~I~IW 833 (834)
+.. ...+..+.|..+ .+++++..+.|.-|.+..--...........++..|+-. -++|-.++....+.|+
T Consensus 243 fpi-pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 243 FPI-PARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred Eec-ccceeEeeeecc--eEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 432 456777888766 577777777898888765433333333333444444322 3456666677777765
No 183
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=5.1e-16 Score=161.07 Aligned_cols=275 Identities=15% Similarity=0.176 Sum_probs=198.8
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEE
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLW 579 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSp--dg~~Lasgs~Dg~I~IW 579 (834)
.+..++++...+.|++|.... +. .+..+++|...+..+.|.. ....+.+|+.||+|++|
T Consensus 39 ~e~~vav~lSngsv~lyd~~t----------------g~---~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~w 99 (376)
T KOG1188|consen 39 FETAVAVSLSNGSVRLYDKGT----------------GQ---LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLW 99 (376)
T ss_pred cceeEEEEecCCeEEEEeccc----------------hh---hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEE
Confidence 346788888889999884422 22 2445567777777888876 45679999999999999
Q ss_pred eCCCCeEEEEe--ccCC-CCeEEEEECCCCCEEEEEeC----CCeEEEEecCCCCcee-eeeccCCCCeEEEEEccCCCc
Q 003279 580 CTESFTVKSTL--EEHT-QWITDVRFSPSLSRLATSSA----DRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKED 651 (834)
Q Consensus 580 d~~t~~~~~~l--~~h~-~~I~~l~fspdg~~Latgs~----Dg~I~IWDl~s~~~~i-~~~~~h~~~V~sl~fspdg~~ 651 (834)
|+++......+ ..+. .+..|++...++..+++|.. |-.|.+||++.....+ .....|.+.|++++|+|....
T Consensus 100 D~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pn 179 (376)
T KOG1188|consen 100 DIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPN 179 (376)
T ss_pred EeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCC
Confidence 99986655443 4555 46677777767888888864 6789999999877644 345679999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCC----ceeeEeecCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEeCCC-----
Q 003279 652 LLCSCDNNSEIRYWSINNG----SCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHK----- 721 (834)
Q Consensus 652 llasgs~Dg~I~lwDl~s~----~~i~~~~~~~~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~----- 721 (834)
+|++|+.||.|.+||++.. ..+.++.+...|.++.|..++ +.|.+.+......+|+++.+.++..+....
T Consensus 180 lLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d 259 (376)
T KOG1188|consen 180 LLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADD 259 (376)
T ss_pred eEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhh
Confidence 9999999999999999754 345667777889999998875 468899999999999999887665544221
Q ss_pred -------CCEEEEEEcCCCCEEEE-Ee-CCeEEEEEc---CCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcCCe
Q 003279 722 -------NQVHSVCWNTSGEYLAS-VS-DELVRVWSI---GSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYET 788 (834)
Q Consensus 722 -------~~I~sl~~spdg~~Las-gs-Dg~I~IwDl---~s~~~~~~i~~~~~-~~~~I~svafspdg~~L~sgs~dg~ 788 (834)
..+.......+...++. ++ -++..++-+ .++.....+..+.+ |...|.++.|...+.++++|+.||.
T Consensus 260 ~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~ 339 (376)
T KOG1188|consen 260 LRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGL 339 (376)
T ss_pred HHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCce
Confidence 01111111123333333 33 344444433 34444445555555 5667888999999999999999999
Q ss_pred EEEEECC
Q 003279 789 LELWNMT 795 (834)
Q Consensus 789 I~Iwdl~ 795 (834)
+.+|...
T Consensus 340 l~~Wk~~ 346 (376)
T KOG1188|consen 340 LQAWKVE 346 (376)
T ss_pred EEEEecC
Confidence 9999853
No 184
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1.4e-15 Score=174.27 Aligned_cols=233 Identities=16% Similarity=0.108 Sum_probs=165.8
Q ss_pred CCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEecCCCCc-eeeeeccCCCCeEEEEEccC
Q 003279 573 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPS 648 (834)
Q Consensus 573 Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~s~~~-~i~~~~~h~~~V~sl~fspd 648 (834)
+..|+|||.+... ...+..|...|.+++|+|||+.|+.++.+ ..|++||+.++.. .+..+.+ ...+++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCC
Confidence 4689999987654 45677788899999999999999988754 3699999987653 2222333 3457899999
Q ss_pred CCcEEEEEeCCCcEE--EEECCCCceeeEeecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCC-eEEEEEeCCCCCE
Q 003279 649 KEDLLCSCDNNSEIR--YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQ-VCRLKLQGHKNQV 724 (834)
Q Consensus 649 g~~llasgs~Dg~I~--lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s-~dg~I~iwDl~t~-~~~~~l~~h~~~I 724 (834)
|+.++++.+.+|.+. +||+.++...........+....|+|+++.|++++ .++...||++... .....+ .+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~-- 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG-- 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--
Confidence 998887777788654 55777666555444455678899999999887766 4677777766432 122222 3433
Q ss_pred EEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC---CCCeEEE
Q 003279 725 HSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM---TENKTLT 801 (834)
Q Consensus 725 ~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl---~~~~~~~ 801 (834)
.++.|+|||++|+..+...+.+||+.++.. ...... .....+.|+|+|++|++++.++.+.+|++ .......
T Consensus 336 ~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~---~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~ 410 (429)
T PRK01742 336 YSAQISADGKTLVMINGDNVVKQDLTSGST---EVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR 410 (429)
T ss_pred CCccCCCCCCEEEEEcCCCEEEEECCCCCe---EEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence 467899999999888745577799988732 111111 13356789999999999999887766654 4444456
Q ss_pred eccCCCCeEEEEEeCC
Q 003279 802 LSAHDKLVSSLAASTV 817 (834)
Q Consensus 802 l~~h~~~V~~lafspd 817 (834)
+..|.+.+..++|+|-
T Consensus 411 l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 411 LPGSDGQVKFPAWSPY 426 (429)
T ss_pred ccCCCCCCCCcccCCC
Confidence 7788888999999984
No 185
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=5.1e-15 Score=169.93 Aligned_cols=282 Identities=17% Similarity=0.288 Sum_probs=211.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC----CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC
Q 003279 549 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 549 ~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t----~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 624 (834)
..|.-.++|.++||+++++|+|..||.|.+|.--. ......+.=|...|.+++|+++|.+|++|+..|.+.+|.+.
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 35777799999999999999999999999995322 12335667799999999999999999999999999999999
Q ss_pred CCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec------------CCCeeEEEEecCCC
Q 003279 625 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------------QSGATQMRFQPRLG 692 (834)
Q Consensus 625 s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~------------~~~i~~l~~sp~g~ 692 (834)
+++ ...+..-.++|..+.++||++.+. .+..|..|.+....+......+.+ .+-.+.++++|.-+
T Consensus 282 T~~--kqfLPRLgs~I~~i~vS~ds~~~s-l~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 282 TGK--KQFLPRLGSPILHIVVSPDSDLYS-LVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred CCC--cccccccCCeeEEEEEcCCCCeEE-EEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 876 466677789999999999988555 555599999988765544443332 12256788999888
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEeC-----C------CCCEEEEEEcCCCCEEEEEe---------CC--eEEEEEcC
Q 003279 693 RILAAAIENYISILDVETQVCRLKLQG-----H------KNQVHSVCWNTSGEYLASVS---------DE--LVRVWSIG 750 (834)
Q Consensus 693 ~ll~~s~dg~I~iwDl~t~~~~~~l~~-----h------~~~I~sl~~spdg~~Lasgs---------Dg--~I~IwDl~ 750 (834)
.++..+..+.|.+||+-+...+..+.. + .-.++.++.+..|.++++.. || .+++|-..
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 899999999999999988766555431 2 22467788888899998864 22 68899877
Q ss_pred CCCCceeEEE--eecCCCceEEEEEeC-CCC-EEEEEEcCCeEEEEECCCCe----------EE-EeccCCCCeEEEEEe
Q 003279 751 SGSKGECIHE--LSCTGNKFHSCVFHP-TFP-SLLVIGCYETLELWNMTENK----------TL-TLSAHDKLVSSLAAS 815 (834)
Q Consensus 751 s~~~~~~i~~--~~~~~~~I~svafsp-dg~-~L~sgs~dg~I~Iwdl~~~~----------~~-~l~~h~~~V~~lafs 815 (834)
.......+.+ ...|+..+...++.+ ... ..++++.||.++||-+.+.+ +. .-.-|..++++++|+
T Consensus 439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs 518 (792)
T KOG1963|consen 439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFS 518 (792)
T ss_pred CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhc
Confidence 6544333322 345666655555543 333 68899999999999883322 11 112478999999999
Q ss_pred CCCCEEEEEecCCcEEEeC
Q 003279 816 TVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 816 pdg~~LaSgs~DG~I~IWd 834 (834)
.||..| +++.|++|.|||
T Consensus 519 ~dGsll-a~s~~~~Itiwd 536 (792)
T KOG1963|consen 519 QDGSLL-AVSFDDTITIWD 536 (792)
T ss_pred CCCcEE-EEecCCEEEEec
Confidence 999655 556888999997
No 186
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.70 E-value=7e-16 Score=167.22 Aligned_cols=261 Identities=16% Similarity=0.245 Sum_probs=191.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEE-CC-------CCCEEEEEeCCCeEEEE
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF-SP-------SLSRLATSSADRTVRVW 621 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~f-sp-------dg~~Latgs~Dg~I~IW 621 (834)
.|...|.||.|+.+...+.+++ |..+.+|.-.+......+.-..+.|....+ -+ ....|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 5677788999998876666555 556666643333333333222222222221 11 23578899999999988
Q ss_pred ecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeE-eecCCCeeEEEEecCCCEEEEEEcC
Q 003279 622 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FKCQSGATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 622 Dl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~-~~~~~~i~~l~~sp~g~~ll~~s~d 700 (834)
+-.. ...+....|.+.|.|-.|+|+|.-++ ++++||.|++|.-. |-...+ ......|.|++|.|+.+.++.+. .
T Consensus 91 ~k~~--rVE~sv~AH~~A~~~gRW~~dGtgLl-t~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g 165 (737)
T KOG1524|consen 91 NKSA--RVERSISAHAAAISSGRWSPDGAGLL-TAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQ-G 165 (737)
T ss_pred cccc--hhhhhhhhhhhhhhhcccCCCCceee-eecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEec-C
Confidence 7553 23567788999999999999998666 88899999999865 332222 23467899999999988777664 4
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003279 701 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 779 (834)
Q Consensus 701 g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~ 779 (834)
+.+.|=.+.....+...+.|.+-|.++.|++...++++|+ |-..+|||-.. ..+..-..|..+|++++|.|+ .
T Consensus 166 ~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G----~~Lf~S~~~ey~ITSva~npd-~- 239 (737)
T KOG1524|consen 166 GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG----ANLFTSAAEEYAITSVAFNPE-K- 239 (737)
T ss_pred CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC----cccccCChhccceeeeeeccc-c-
Confidence 6777777777777888899999999999999999999999 88999999654 566677788999999999999 4
Q ss_pred EEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 780 LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 780 L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
++..++.+++++= ....+.|..++||+||..++.|+..|.|.+
T Consensus 240 ~~~v~S~nt~R~~----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 240 DYLLWSYNTARFS----------SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ceeeeeeeeeeec----------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 3333444455521 234578999999999999999999887753
No 187
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.68 E-value=1.2e-14 Score=149.88 Aligned_cols=271 Identities=15% Similarity=0.196 Sum_probs=201.5
Q ss_pred CCeEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCCcee
Q 003279 553 SKVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSL 630 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasg-s~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~IWDl~s~~~~i 630 (834)
+.|.-+.|..|.-+++++ ..|+.|.+|++...+-...+.....++..++|+|||+ +|.+...|-.|.||.+.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 456777888777765554 5677999999998888888888889999999999995 56677789999999999865432
Q ss_pred eeeccCCCCeEEEEEccCCCcEEEEEe-----------------------------------CCCcEEEEECCCCceeeE
Q 003279 631 RTFTGHSTTVMSLDFHPSKEDLLCSCD-----------------------------------NNSEIRYWSINNGSCAGV 675 (834)
Q Consensus 631 ~~~~~h~~~V~sl~fspdg~~llasgs-----------------------------------~Dg~I~lwDl~s~~~i~~ 675 (834)
. .-....+..++|+|+|.+..+..- ++..+.+||---.-.+..
T Consensus 129 ~--~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 129 L--PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred e--cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 2 223345688899999875443221 123455555433333344
Q ss_pred eecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE---------------------------------------
Q 003279 676 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK--------------------------------------- 716 (834)
Q Consensus 676 ~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~--------------------------------------- 716 (834)
+...-++..+.|+|.+.++++|+.|+.++|.+--+.+...+
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 55567899999999999999999999888765433221110
Q ss_pred ---------------------Ee------CCCCCEEEEEEcCCCCEEEEEeCC---eEEEEEcCCCCCceeEEEeecCCC
Q 003279 717 ---------------------LQ------GHKNQVHSVCWNTSGEYLASVSDE---LVRVWSIGSGSKGECIHELSCTGN 766 (834)
Q Consensus 717 ---------------------l~------~h~~~I~sl~~spdg~~LasgsDg---~I~IwDl~s~~~~~~i~~~~~~~~ 766 (834)
++ ...-.+.-++|++|..|+++-.|. .+-+||+... .++.+-....
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l----~l~avLiQk~ 362 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL----KLHAVLIQKH 362 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh----hhhhhhhhcc
Confidence 00 011234568999999999998754 7999999875 3344445578
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCc
Q 003279 767 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 829 (834)
Q Consensus 767 ~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~ 829 (834)
+|....|+|..+.|+++.....+++|.......+......-.|..+.|.-+|..++.++.|..
T Consensus 363 piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 899999999999999999999999999988777777666788999999999999999998864
No 188
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.67 E-value=2.9e-15 Score=171.85 Aligned_cols=246 Identities=17% Similarity=0.227 Sum_probs=188.7
Q ss_pred CCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeE--EE----EeccCCCCeEEEEECCCC--CEEEEEeCCCeEEEE
Q 003279 551 STSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV--KS----TLEEHTQWITDVRFSPSL--SRLATSSADRTVRVW 621 (834)
Q Consensus 551 H~~~V~sl~fSp-dg~~Lasgs~Dg~I~IWd~~t~~~--~~----~l~~h~~~I~~l~fspdg--~~Latgs~Dg~I~IW 621 (834)
-...|+|++|+| +..+||.|+.+|.|.+||+..+.. .. ....|..+|+.+.|..+. .-|++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 356799999999 667888899999999999987655 22 234699999999998754 449999999999999
Q ss_pred ecCCCCceeee-----ec------cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce--------e-eEeecCCC
Q 003279 622 DTENPDYSLRT-----FT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--------A-GVFKCQSG 681 (834)
Q Consensus 622 Dl~s~~~~i~~-----~~------~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~--------i-~~~~~~~~ 681 (834)
+++.-..+... .. .-...+++++|.+.....|+.|+++|.|..-+-...+. . ....+.+.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 88743321111 11 12346889999998888999999999988744332211 1 12234678
Q ss_pred eeEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEEEEeCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCceeE
Q 003279 682 ATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECI 758 (834)
Q Consensus 682 i~~l~~sp~g~~ll~~s~dg~I~iwDl~-t~~~~~~l~~h~~~I~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~~~i 758 (834)
|.++.++|-+..++..+.|.+++||... ...++..+..+...|++++|||..- .++++. ||.|.|||+..... .++
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~-~Pv 479 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE-EPV 479 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc-CCc
Confidence 9999999988877777779999999988 6778888888888899999999765 455555 99999999987543 444
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003279 759 HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 797 (834)
Q Consensus 759 ~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~ 797 (834)
..........+.+.|++.|+.|++|...|.+++|++...
T Consensus 480 ~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 480 LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 454444666778889999999999999999999999643
No 189
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=2.4e-14 Score=163.87 Aligned_cols=234 Identities=13% Similarity=0.111 Sum_probs=172.2
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC---CCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCC
Q 003279 574 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 650 (834)
Q Consensus 574 g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~---Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~ 650 (834)
..|.+||.+..... .+..+...+.+.+|+|||+.|+..+. +..|++||+.++.. ..+....+.+..++|+|||+
T Consensus 179 ~~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCCCcCCeEECCCCC
Confidence 36889998765443 34456778999999999999987653 45799999987653 23333334456789999999
Q ss_pred cEEEEEeCCC--cEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEEeCCCCCEE
Q 003279 651 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVH 725 (834)
Q Consensus 651 ~llasgs~Dg--~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d-g--~I~iwDl~t~~~~~~l~~h~~~I~ 725 (834)
.++++.+.+| .|++||+.+++..........+....|+|+++.|++++.+ + .|+++|+.++... .+..+...+.
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~ 334 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQ 334 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCcc
Confidence 8887766665 5999999988776665555667889999999999887764 3 5666687776543 3333444566
Q ss_pred EEEEcCCCCEEEEEe--C--CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCe
Q 003279 726 SVCWNTSGEYLASVS--D--ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 798 (834)
Q Consensus 726 sl~~spdg~~Lasgs--D--g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg---~I~Iwdl~~~~ 798 (834)
+.+|+|||++|+..+ + ..|++||+.++.. . .+.. ........|+|||..|++++.++ .++++++....
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~---~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-Q---VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCCe-E---EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 889999999988766 3 2688999987732 2 2221 12234678999999999998876 47888997777
Q ss_pred EEEeccCCCCeEEEEEeC
Q 003279 799 TLTLSAHDKLVSSLAAST 816 (834)
Q Consensus 799 ~~~l~~h~~~V~~lafsp 816 (834)
...+..|.+.+...+|+|
T Consensus 410 ~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 410 KARLPATDGQVKFPAWSP 427 (429)
T ss_pred eEECccCCCCcCCcccCC
Confidence 777888889999999987
No 190
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.67 E-value=1.4e-14 Score=147.39 Aligned_cols=278 Identities=14% Similarity=0.211 Sum_probs=203.2
Q ss_pred EEEEecCCCCCeEEEEEcC--C-CCEEEEEeC----CCcEEEEeC--CCCeEEEEe-ccCCCCeEEEEECCCCC-----E
Q 003279 544 EFQLIPASTSKVESCHFSP--D-GKLLATGGH----DKKAVLWCT--ESFTVKSTL-EEHTQWITDVRFSPSLS-----R 608 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSp--d-g~~Lasgs~----Dg~I~IWd~--~t~~~~~~l-~~h~~~I~~l~fspdg~-----~ 608 (834)
++..+.++- .++++.|+. + +.+||.|+. .++|.|..+ ++++.+..- ..|..+++.+.|.|+.. +
T Consensus 37 eiy~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdl 115 (364)
T KOG0290|consen 37 EIYTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDL 115 (364)
T ss_pred eEEEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcch
Confidence 344444443 488888884 3 347888874 456666544 344444222 36899999999999753 4
Q ss_pred EEEEeCCCeEEEEecCCCCcee--------eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc----eeeEe
Q 003279 609 LATSSADRTVRVWDTENPDYSL--------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS----CAGVF 676 (834)
Q Consensus 609 Latgs~Dg~I~IWDl~s~~~~i--------~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~----~i~~~ 676 (834)
|||++ -.+++|.+...+..+ ..-..+..++++++|+.-...++.+++-|-+..|||++++. ....+
T Consensus 116 LATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLI 193 (364)
T KOG0290|consen 116 LATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLI 193 (364)
T ss_pred hhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEE
Confidence 56553 479999998432111 12234668999999998888899999999999999999873 34556
Q ss_pred ecCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEeC---CCCCEEEEEEcCC-CCEEEEEe--CCeEEEEEc
Q 003279 677 KCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG---HKNQVHSVCWNTS-GEYLASVS--DELVRVWSI 749 (834)
Q Consensus 677 ~~~~~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t~~~~~~l~~---h~~~I~sl~~spd-g~~Lasgs--Dg~I~IwDl 749 (834)
.|..+|..++|...+ ..|++++.||.+++||++..+.-..+.. ...+...++|++. -+++++-. ...|.|.|+
T Consensus 194 AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDi 273 (364)
T KOG0290|consen 194 AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDI 273 (364)
T ss_pred ecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEe
Confidence 688999999999855 4577888999999999998754333322 2457889999884 46777765 448999999
Q ss_pred CCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeE------EEeccCCCCeEEEEEeCC-CCEE
Q 003279 750 GSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKT------LTLSAHDKLVSSLAASTV-NGMV 821 (834)
Q Consensus 750 ~s~~~~~~i~~~~~~~~~I~svafspdg-~~L~sgs~dg~I~Iwdl~~~~~------~~l~~h~~~V~~lafspd-g~~L 821 (834)
+... ..+.++..|...|+.++|.|.. ..|++++.|..+.|||+..--. +......+.|..+.|++. ...|
T Consensus 274 R~P~--tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwi 351 (364)
T KOG0290|consen 274 RVPC--TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWI 351 (364)
T ss_pred cCCC--cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEE
Confidence 9764 6788999999999999999975 5688888888999999965322 222346788999999964 4567
Q ss_pred EEEec
Q 003279 822 ASASH 826 (834)
Q Consensus 822 aSgs~ 826 (834)
+.+..
T Consensus 352 ai~~~ 356 (364)
T KOG0290|consen 352 AICFG 356 (364)
T ss_pred EEEec
Confidence 76654
No 191
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.1e-14 Score=144.84 Aligned_cols=229 Identities=20% Similarity=0.208 Sum_probs=168.5
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEecCC---------CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 003279 596 WITDVRFSPSLSRLATSSADRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 666 (834)
Q Consensus 596 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~s---------~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwD 666 (834)
.|..-+|+|.+++|+.|+.+|.|.++.+.+ ++..+..+.+|.++|+.++|+. .+|.+|+ ||.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEee
Confidence 456678999999999999999999998863 3344566789999999999993 3565776 69999998
Q ss_pred CCCCce------eeEee--------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCC
Q 003279 667 INNGSC------AGVFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 732 (834)
Q Consensus 667 l~s~~~------i~~~~--------~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spd 732 (834)
.+.... +.... .-..|+.+-..|..+.+++++.|+.++.||+++|+...++++|++.|.++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 764321 11111 1235888999999999999999999999999999999999999999999998444
Q ss_pred CCEEEEEe-CCeEEEEEcCCCCCceeEEEeec------C-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEecc
Q 003279 733 GEYLASVS-DELVRVWSIGSGSKGECIHELSC------T-GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA 804 (834)
Q Consensus 733 g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~------~-~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~ 804 (834)
..-+++|+ ||+++|||+++.+....+...+. + ...|-+++. +...+++|+ ...+.+|+++..+......
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEe
Confidence 44455666 99999999999844333332221 1 123444444 444555544 4579999999999887777
Q ss_pred CCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 805 HDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 805 h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
....|..+.|..| .+++++....|.-|
T Consensus 245 ipa~v~~v~F~~d--~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 245 IPARVHLVDFVDD--CVLIGGEGNHVQSY 271 (325)
T ss_pred cccceeEeeeecc--eEEEeccccceeee
Confidence 7888998988744 46666655555444
No 192
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=4.2e-16 Score=169.29 Aligned_cols=238 Identities=17% Similarity=0.252 Sum_probs=170.6
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-ccCCCCeEEEEECC--CCCEEEEEeCCCeEE
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTVR 619 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l-~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~ 619 (834)
.....|.||++.|.|+.|+.||.+|++|+.|-.+.|||.-..+.+..+ .+|...|.++.|-| +.+++++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 345678899999999999999999999999999999999988888776 68999999999999 467899999999999
Q ss_pred EEecCC---------CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCcee-eEe----------ecC
Q 003279 620 VWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVF----------KCQ 679 (834)
Q Consensus 620 IWDl~s---------~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i-~~~----------~~~ 679 (834)
+||+.. .......+..|...|..|+..|++.+.|.++++||+|+-+|++....- ... ..-
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 999985 223455677899999999999999999999999999999999863211 110 001
Q ss_pred CCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEeC-----CCCCEEEEE-EcCCCCEEEEEeCCeEEEEEcCCC
Q 003279 680 SGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG-----HKNQVHSVC-WNTSGEYLASVSDELVRVWSIGSG 752 (834)
Q Consensus 680 ~~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t~~~~~~l~~-----h~~~I~sl~-~spdg~~LasgsDg~I~IwDl~s~ 752 (834)
-...|+.++|.. .+|++|+.|-..++||.+...+...-.+ ......|+. |+|.+. ...++.+.
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl---kn~~gn~~------- 270 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL---KNSQGNLD------- 270 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc---cCcccccc-------
Confidence 246788999965 4577888899999999653211110000 011111221 122111 00011100
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 753 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 753 ~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
.....++-+.|+|+|..|++.-....|+++|+..++..
T Consensus 271 ----------~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 271 ----------RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred ----------cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 00123456789999988888877778999999876644
No 193
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=2.9e-14 Score=149.71 Aligned_cols=230 Identities=14% Similarity=0.180 Sum_probs=180.3
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC--CcEEEEECCCCc
Q 003279 594 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGS 671 (834)
Q Consensus 594 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D--g~I~lwDl~s~~ 671 (834)
...+..+.|+.+...|..|+.|| .++|..+.-.. ..........|..+-|+.. ++|..+.+ +.+++++++.+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k-~~~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK-CFSKDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHH-hhcccCCCeEEEEeecccc---eeEEEecCCCceEEEEEcccCc
Confidence 45677888999999999999998 57887775433 1122223344556667633 55555544 459999999999
Q ss_pred eeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC---CCCCEEEEEEcCCCCEEEEEe---CCeEE
Q 003279 672 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---HKNQVHSVCWNTSGEYLASVS---DELVR 745 (834)
Q Consensus 672 ~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~---h~~~I~sl~~spdg~~Lasgs---Dg~I~ 745 (834)
.+..+.....|.++.++.+ +|+++-.+. |+|||+++.+.+.++.. +...+.++++++.+.||+.-+ .|.|.
T Consensus 80 ~ICe~~fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 80 TICEIFFPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred eEEEEecCCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 9999988999999999764 555555444 99999999998888764 344566666777777888754 67999
Q ss_pred EEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCeEE-Eecc--CCCCeEEEEEeCCCCEE
Q 003279 746 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSA--HDKLVSSLAASTVNGMV 821 (834)
Q Consensus 746 IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg-~I~Iwdl~~~~~~-~l~~--h~~~V~~lafspdg~~L 821 (834)
|||+.+- ..+..+..|.+.+-+++|+++|.+|++++..| .|+||.+.+|..+ .++. ....|.+++|+|++.+|
T Consensus 157 l~d~~nl---~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 157 LFDTINL---QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred EEEcccc---eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 9999887 78888899999999999999999999999999 6899999999877 4432 24568899999999999
Q ss_pred EEEecCCcEEEeC
Q 003279 822 ASASHDKCVKIWK 834 (834)
Q Consensus 822 aSgs~DG~I~IWd 834 (834)
++.+..++|+||+
T Consensus 234 ~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 234 AASSNTETVHIFK 246 (391)
T ss_pred EEecCCCeEEEEE
Confidence 9999999999985
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=1.2e-13 Score=145.04 Aligned_cols=233 Identities=16% Similarity=0.245 Sum_probs=175.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC--eEEEEecCCCCce
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYS 629 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg--~I~IWDl~s~~~~ 629 (834)
...|..+.|+.|...|..|+.|| .++|+.+..............|.-.-|+. .++|..+.+. .++++++.....
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~- 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTT- 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCce-
Confidence 34577788999999999999887 57887776544333333334455566654 4666666543 589999886543
Q ss_pred eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC----CCeeEEEEecCCCEEEEEEc--CCeE
Q 003279 630 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ----SGATQMRFQPRLGRILAAAI--ENYI 703 (834)
Q Consensus 630 i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~----~~i~~l~~sp~g~~ll~~s~--dg~I 703 (834)
+..+. ....|.++.++.+ +++ ++-. ..|+|||+++.+.+.++... .++..+.++..+.+++.-+. .|.|
T Consensus 81 ICe~~-fpt~IL~VrmNr~--RLv-V~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNRK--RLV-VCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred EEEEe-cCCceEEEEEccc--eEE-EEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 33332 4567999999854 344 4543 34999999999999888753 33555566666667776544 5899
Q ss_pred EEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CC-eEEEEEcCCCCCceeEEEeecC--CCceEEEEEeCCCCE
Q 003279 704 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPS 779 (834)
Q Consensus 704 ~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg-~I~IwDl~s~~~~~~i~~~~~~--~~~I~svafspdg~~ 779 (834)
.+||+.+-+.+..+..|.+.+-+++|+++|.+||+++ .| .||||.+.++ ..+.+|+.. ...|.+++|++++.+
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G---~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG---QKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc---cEeeeeeCCceeeEEEEEEECCCCCe
Confidence 9999999999999999999999999999999999999 44 7999999988 566666543 345789999999999
Q ss_pred EEEEEcCCeEEEEECCC
Q 003279 780 LLVIGCYETLELWNMTE 796 (834)
Q Consensus 780 L~sgs~dg~I~Iwdl~~ 796 (834)
|++.+..++|+||.++.
T Consensus 233 L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEecCCCeEEEEEecc
Confidence 99999999999998854
No 195
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.66 E-value=6.5e-15 Score=162.77 Aligned_cols=240 Identities=16% Similarity=0.218 Sum_probs=182.8
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEec
Q 003279 544 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 623 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 623 (834)
...++++|.+.|+|++|+.||+.+|+|+.|+.|.||+-.-... ..+ .|.+.|.|+.|+|-...|++|+-. ..-+|..
T Consensus 45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~ 121 (1081)
T KOG1538|consen 45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-LKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSP 121 (1081)
T ss_pred cccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-eee-ccCCeeeEeecCchHHHhhhcchh-hccccCh
Confidence 3578899999999999999999999999999999998543222 222 599999999999999999998754 3668877
Q ss_pred CCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee---cCCCeeEEEEecCC-----CEEE
Q 003279 624 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRL-----GRIL 695 (834)
Q Consensus 624 ~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~---~~~~i~~l~~sp~g-----~~ll 695 (834)
+.... ... .....|.+++|..||. +++.|-.+|+|.+-+-.....+..-. .+++|.+++|+|.. ..++
T Consensus 122 ~qK~V--~K~-kss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~a 197 (1081)
T KOG1538|consen 122 EQKSV--SKH-KSSSRIICCSWTNDGQ-YLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILA 197 (1081)
T ss_pred hhhhH--Hhh-hhheeEEEeeecCCCc-EEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEE
Confidence 65332 111 1346788999999977 66788889999998765443333333 35679999999963 3566
Q ss_pred EEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEe
Q 003279 696 AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 774 (834)
Q Consensus 696 ~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafs 774 (834)
+.....++.+|.+.. +.+..-+.-.-...|+.+.++|.|+..|+ |+.+++|.-+ + ..+.++......|++++..
T Consensus 198 V~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-G---vrLGTvg~~D~WIWtV~~~ 272 (1081)
T KOG1538|consen 198 VADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-G---VRLGTVGEQDSWIWTVQAK 272 (1081)
T ss_pred EEeccceeEEEEecc-eeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec-C---eEEeeccccceeEEEEEEc
Confidence 777777787777753 33322222334567899999999999888 9999999643 2 4566666678899999999
Q ss_pred CCCCEEEEEEcCCeEEEEECC
Q 003279 775 PTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 775 pdg~~L~sgs~dg~I~Iwdl~ 795 (834)
|++.++++|+.||+|..|++-
T Consensus 273 PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 273 PNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred cCCceEEEEEccCeeehhhhH
Confidence 999999999999999999874
No 196
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=5.7e-15 Score=169.13 Aligned_cols=220 Identities=17% Similarity=0.204 Sum_probs=158.8
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEE--EEeccCCCCeEEEEECCCCCEEEEEe-CCCeEE
Q 003279 546 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSS-ADRTVR 619 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~Lasgs~D---g~I~IWd~~t~~~~--~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~ 619 (834)
..+..|...|.+.+|||||+.|++++.+ ..|++||+.+++.. ..+.+| ..+++|+|||+.|++++ .+|.+.
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~ 273 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLN 273 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEE
Confidence 4456788889999999999999988754 36999999887543 333333 45789999999888765 678666
Q ss_pred EE--ecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC-ceeeEeecCCCeeEEEEecCCCEEEE
Q 003279 620 VW--DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILA 696 (834)
Q Consensus 620 IW--Dl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~-~~i~~~~~~~~i~~l~~sp~g~~ll~ 696 (834)
|| |+.++. ...+..+...+.++.|+||++.+++++..++.+.||++... .....+.. .. .+..|+|+++.|++
T Consensus 274 Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~-~~-~~~~~SpDG~~ia~ 349 (429)
T PRK01742 274 IYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG-RG-YSAQISADGKTLVM 349 (429)
T ss_pred EEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC-CC-CCccCCCCCCEEEE
Confidence 55 555433 45566677788899999999988878777888888876432 22233322 22 46789999999988
Q ss_pred EEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003279 697 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 775 (834)
Q Consensus 697 ~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafsp 775 (834)
++.++ +.+||+.++........+ ...++.|+|||++|++++ ++.+.+|++... ....+..+..+.+.+..++|+|
T Consensus 350 ~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~-~G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 350 INGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSA-DGRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred EcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCceEEccCCCCCCCCcccCC
Confidence 87754 666999988655333222 345788999999999988 887777776421 1156667777778888899998
Q ss_pred C
Q 003279 776 T 776 (834)
Q Consensus 776 d 776 (834)
-
T Consensus 426 ~ 426 (429)
T PRK01742 426 Y 426 (429)
T ss_pred C
Confidence 5
No 197
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.65 E-value=1.6e-14 Score=149.05 Aligned_cols=224 Identities=15% Similarity=0.198 Sum_probs=172.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC---CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 626 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t---~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~ 626 (834)
--..+|+|.+|++|+..+|++.....|.||.... .+..+++..|...|++|+|+|..+.|++|+.|..-+||....+
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 3456899999999999999999999999998764 4577899999999999999999999999999999999998433
Q ss_pred -Cc-eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceee-----EeecCCCeeEEEEecCCCEEEEEEc
Q 003279 627 -DY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-----VFKCQSGATQMRFQPRLGRILAAAI 699 (834)
Q Consensus 627 -~~-~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~-----~~~~~~~i~~l~~sp~g~~ll~~s~ 699 (834)
.. +...+..++..++++.|+|.++ .|++|+....|.||-++...-=. .....+.|.++.|+|++-.+++|+.
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~ 166 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST 166 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence 32 3345667889999999999965 67788888899998877543221 1223567899999999999999999
Q ss_pred CCeEEEEECC-----C-------------CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEE
Q 003279 700 ENYISILDVE-----T-------------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 760 (834)
Q Consensus 700 dg~I~iwDl~-----t-------------~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~ 760 (834)
|+..+||..- . |....++....+.|..+.|+|+|..|+-.+ |..+.+-|...... .+..
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~--~v~~ 244 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE--RVQS 244 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch--hccc
Confidence 9999988542 1 122233334567899999999999999877 99999999876531 2222
Q ss_pred eecCCCceEEEEEeCC
Q 003279 761 LSCTGNKFHSCVFHPT 776 (834)
Q Consensus 761 ~~~~~~~I~svafspd 776 (834)
.....-+..++.|-.+
T Consensus 245 ~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISE 260 (361)
T ss_pred hhhccCCceeeEeecC
Confidence 2223345555555443
No 198
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.65 E-value=2.2e-13 Score=152.08 Aligned_cols=285 Identities=17% Similarity=0.173 Sum_probs=184.7
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEe
Q 003279 544 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWD 622 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWD 622 (834)
.+..+......-..+.|+|||+++++++.||.|.++|+.+.+.+.++.... ...++++++||++++++. .++.|.++|
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D 106 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVID 106 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEE
T ss_pred EEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEec
Confidence 345555444333457899999999999999999999999999999997654 467899999999998776 589999999
Q ss_pred cCCCCceeeeecc-------CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCcee--eEeecCCCeeEEEEecCCCE
Q 003279 623 TENPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFKCQSGATQMRFQPRLGR 693 (834)
Q Consensus 623 l~s~~~~i~~~~~-------h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i--~~~~~~~~i~~l~~sp~g~~ 693 (834)
..+.+. +..+.. ....+..|..+|....++++--+.+.|.+.|....+.+ ..+..........|+|++++
T Consensus 107 ~~tle~-v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry 185 (369)
T PF02239_consen 107 AETLEP-VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRY 185 (369)
T ss_dssp TTT--E-EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSE
T ss_pred cccccc-eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccce
Confidence 988654 444332 23467788888887766666666689999998775533 44555677889999999999
Q ss_pred EEEEEc-CCeEEEEECCCCeEEEEEeC----CCCCEEEEE-------Ec--CCCCEE-EEEeCCeEEEEEcCCCCCceeE
Q 003279 694 ILAAAI-ENYISILDVETQVCRLKLQG----HKNQVHSVC-------WN--TSGEYL-ASVSDELVRVWSIGSGSKGECI 758 (834)
Q Consensus 694 ll~~s~-dg~I~iwDl~t~~~~~~l~~----h~~~I~sl~-------~s--pdg~~L-asgsDg~I~IwDl~s~~~~~~i 758 (834)
++++.. ++.|.++|.++++.+..+.. |..++..+- |. ..+... ...+.+.+.+||..+. +.+
T Consensus 186 ~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w---kvv 262 (369)
T PF02239_consen 186 FLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW---KVV 262 (369)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT---SEE
T ss_pred eeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcC---eEE
Confidence 887654 68999999999987776542 344443331 21 122222 2222445556776665 677
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEE---E-cCCeEEEEECCCCeEEEecc--CCCCeEEEEEeCCCCEEEEEecCC--cE
Q 003279 759 HELSCTGNKFHSCVFHPTFPSLLVI---G-CYETLELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDK--CV 830 (834)
Q Consensus 759 ~~~~~~~~~I~svafspdg~~L~sg---s-~dg~I~Iwdl~~~~~~~l~~--h~~~V~~lafspdg~~LaSgs~DG--~I 830 (834)
..+...... .-+..||+++++++. + ..+.|.++|..+.+.+.... ....+..+.|++||+.+..+..|+ .|
T Consensus 263 ~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i 341 (369)
T PF02239_consen 263 KTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAI 341 (369)
T ss_dssp EEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEE
T ss_pred EEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEE
Confidence 788776666 778889999999998 3 34699999999998764332 223599999999999766655443 59
Q ss_pred EEeC
Q 003279 831 KIWK 834 (834)
Q Consensus 831 ~IWd 834 (834)
.|||
T Consensus 342 ~v~D 345 (369)
T PF02239_consen 342 VVYD 345 (369)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8886
No 199
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=4.8e-14 Score=161.72 Aligned_cols=234 Identities=16% Similarity=0.093 Sum_probs=169.6
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCC
Q 003279 574 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 650 (834)
Q Consensus 574 g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~ 650 (834)
..|.+||.... ....+..+...+.+.+|+||++.|+.++.+ ..|++||+.++.. ..+..+.+...++.|+|+|+
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCCC
Confidence 46899998644 444566677889999999999999988753 4699999987653 33344455566889999999
Q ss_pred cEEEEEeCCC--cEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc-CC--eEEEEECCCCeEEEEEeCCCCCEE
Q 003279 651 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YISILDVETQVCRLKLQGHKNQVH 725 (834)
Q Consensus 651 ~llasgs~Dg--~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg--~I~iwDl~t~~~~~~l~~h~~~I~ 725 (834)
.++++.+.+| .|++||+.+++..............+|+|+++.|++++. ++ .|+++|+.++.... +..+.....
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~ 339 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNA 339 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCcc
Confidence 8887777666 599999998876554444344567899999999988775 34 47778887765433 222334455
Q ss_pred EEEEcCCCCEEEEEe-CC---eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCe
Q 003279 726 SVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENK 798 (834)
Q Consensus 726 sl~~spdg~~Lasgs-Dg---~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d---g~I~Iwdl~~~~ 798 (834)
.++|+|||++|+..+ ++ .|.+||+.++.. . .+. +......+.|+|+|++|+..+.+ ..|+++++..+.
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~---~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV---R-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCe---E-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 789999999998765 32 699999987632 1 222 22234567999999998887764 378899997776
Q ss_pred EEEeccCCCCeEEEEEeC
Q 003279 799 TLTLSAHDKLVSSLAAST 816 (834)
Q Consensus 799 ~~~l~~h~~~V~~lafsp 816 (834)
...+..+.+.+..++|+|
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 666666777888888886
No 200
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=6.2e-14 Score=146.46 Aligned_cols=278 Identities=15% Similarity=0.234 Sum_probs=192.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-cCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCCCc-
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY- 628 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~s~~~- 628 (834)
+-.+..++|++.-..+|++..|-.|++||-.. ++...++ .....|+|++|-|. .+.|++|+.. -|.||..+....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc
Confidence 34578899999777789999999999999766 4444553 34467999999996 4566666655 489998763221
Q ss_pred ------------eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEe-ecCCCeeEEEEecCCCEEE
Q 003279 629 ------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRIL 695 (834)
Q Consensus 629 ------------~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~-~~~~~i~~l~~sp~g~~ll 695 (834)
.+....+| .+|+++.|.+||..++-++-.|..|.|||..++..+... ...+++.-+.|+||+.+|+
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 12233445 689999999998866544456789999999999888776 4567789999999999999
Q ss_pred EEEcCCeEEEEECC-CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCce------------eEEEee
Q 003279 696 AAAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGE------------CIHELS 762 (834)
Q Consensus 696 ~~s~dg~I~iwDl~-t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~------------~i~~~~ 762 (834)
++..|+..++|... +..+..-.. ..+.|...+|+|+|++|.....+.-++|.+....... .+..+.
T Consensus 255 aAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred Eecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 99999999999554 444433333 3458999999999999888877766777664322110 111111
Q ss_pred -----c----CCCceEEEEEeCCCCEEEEEEcCC--------eEEEEECCCCeEEEec--c--CCCCeEEEEEeC---CC
Q 003279 763 -----C----TGNKFHSCVFHPTFPSLLVIGCYE--------TLELWNMTENKTLTLS--A--HDKLVSSLAAST---VN 818 (834)
Q Consensus 763 -----~----~~~~I~svafspdg~~L~sgs~dg--------~I~Iwdl~~~~~~~l~--~--h~~~V~~lafsp---dg 818 (834)
. -.+++.+++|+|.|.+|++.-..+ .|.+||....-++.+. + .......|+|+| ++
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g 413 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEG 413 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCC
Confidence 1 146788999999999999876544 4677887766555332 1 112244566665 44
Q ss_pred CEEEEEecCCcEEEe
Q 003279 819 GMVASASHDKCVKIW 833 (834)
Q Consensus 819 ~~LaSgs~DG~I~IW 833 (834)
.+|..|=..|.|.-|
T Consensus 414 ~lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 414 RLLSIAWSTGRIQRY 428 (445)
T ss_pred cEEEEEeccCceEee
Confidence 555555555655433
No 201
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=8.6e-14 Score=159.81 Aligned_cols=234 Identities=13% Similarity=0.152 Sum_probs=171.2
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC---CCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCC
Q 003279 574 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 650 (834)
Q Consensus 574 g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~---Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~ 650 (834)
..|++||.+. .....+..|...|.+.+|+|||+.|+..+. +..|++||+.++.. ..+..+.+.+.+.+|+|||+
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCC
Confidence 4788889754 444566678889999999999999988764 46899999987653 44555667788999999999
Q ss_pred cEEEEEeCCCc--EEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcC---CeEEEEECCCCeEEEEEeCCCCCEE
Q 003279 651 DLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVH 725 (834)
Q Consensus 651 ~llasgs~Dg~--I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d---g~I~iwDl~t~~~~~~l~~h~~~I~ 725 (834)
.++++.+.++. |++||+.++................|+|+++.|++++.. ..|+++|+..+.... +..+...+.
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~ 337 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYS 337 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCccc
Confidence 88888776665 888899888765544444456778999999999887753 368889988765433 333455667
Q ss_pred EEEEcCCCCEEEEEe-C---CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC------CeEEEEECC
Q 003279 726 SVCWNTSGEYLASVS-D---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY------ETLELWNMT 795 (834)
Q Consensus 726 sl~~spdg~~Lasgs-D---g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d------g~I~Iwdl~ 795 (834)
...|+|||++|+... + ..|.+||+..+. ...+. ....+..+.|+|||+.|+..+.+ ..|+++|+.
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~----~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG----ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCc----eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 789999999998876 2 268888986542 12222 22346778999999998876653 268888998
Q ss_pred CCeEEEeccCCCCeEEEEEeCC
Q 003279 796 ENKTLTLSAHDKLVSSLAASTV 817 (834)
Q Consensus 796 ~~~~~~l~~h~~~V~~lafspd 817 (834)
++....+. ..+.+...+|+|-
T Consensus 413 g~~~~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 413 GRNEREVP-TPGDASDPAWSPL 433 (435)
T ss_pred CCceEEcc-CCCCccCcccCCC
Confidence 77765554 4556778888763
No 202
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=3.7e-14 Score=155.43 Aligned_cols=277 Identities=14% Similarity=0.167 Sum_probs=202.9
Q ss_pred CCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc
Q 003279 550 ASTSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 628 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~-Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~ 628 (834)
.|....+.|..+|||+| +|+|.+.-.|++||+........-.-....|.-.-++.|-..++.-..|.+|-+..-.....
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 57777889999999997 56777888999999998766544433445566666666655566666777776654332111
Q ss_pred eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC-CCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003279 629 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILD 707 (834)
Q Consensus 629 ~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~-~~i~~l~~sp~g~~ll~~s~dg~I~iwD 707 (834)
.++ -...-.+++++.-.-.+++.| ....|+-++++.|..+..+... ..++++.+++....|++|+.+|.|..||
T Consensus 129 ~~R----IP~~GRDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 129 RTR----IPKFGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred eee----cCcCCccccccCCCccEEEee-cCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 111 112334555654434455444 4678999999999999888875 7799999999999999999999999999
Q ss_pred CCCCeEEEEEe------CCCC-----CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003279 708 VETQVCRLKLQ------GHKN-----QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 775 (834)
Q Consensus 708 l~t~~~~~~l~------~h~~-----~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafsp 775 (834)
.++...+..+. .|.+ .|+++.|+.+|-.+++|. +|.|.|||+++..+ .+..-....-+|..+.|.+
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--l~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--LLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc--eeecccCCccceeeecccc
Confidence 99876555543 2333 499999999999999998 99999999998742 2223334456788899977
Q ss_pred CCCE-EEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 776 TFPS-LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 776 dg~~-L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
.+.. .++......++|||-.+|+..........+..+|+-|++.++++|-.++.+..|
T Consensus 282 ~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 282 TDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred cCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeE
Confidence 6433 333334448999999999999777777789999999999999999888776543
No 203
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.63 E-value=1.6e-14 Score=146.88 Aligned_cols=211 Identities=20% Similarity=0.359 Sum_probs=164.1
Q ss_pred CeeeeEEEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE-EEEe-----ccCCCCeEEEEECC--CCCEE
Q 003279 539 GFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTL-----EEHTQWITDVRFSP--SLSRL 609 (834)
Q Consensus 539 g~~~~~~~~l~-gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~-~~~l-----~~h~~~I~~l~fsp--dg~~L 609 (834)
..++..+..+. .|-+.|.|+.|.|++..||+-. |..|.+|+++.... +..+ .+|....++-+|+| ++..+
T Consensus 109 ~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv 187 (370)
T KOG1007|consen 109 SSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQV 187 (370)
T ss_pred cchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceE
Confidence 34555666666 6667999999999999999876 78999999987665 3333 23566788899999 67777
Q ss_pred EEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc-eeeEeec-CCCeeEEEE
Q 003279 610 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKC-QSGATQMRF 687 (834)
Q Consensus 610 atgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~-~i~~~~~-~~~i~~l~~ 687 (834)
++. .|+++..||+++.......-..|...|..++|+|+..++|++|++||.|++||.+.-+ ++..+.. ..-+.++.|
T Consensus 188 ~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRf 266 (370)
T KOG1007|consen 188 ATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRF 266 (370)
T ss_pred EEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEe
Confidence 776 6889999999987766667778999999999999999999999999999999998644 4555543 345999999
Q ss_pred ecCC-CEEEEEEcCCeEEEEECCCC-----------------------------eEEEEEeCCCCCEEEEEEcCCCCEEE
Q 003279 688 QPRL-GRILAAAIENYISILDVETQ-----------------------------VCRLKLQGHKNQVHSVCWNTSGEYLA 737 (834)
Q Consensus 688 sp~g-~~ll~~s~dg~I~iwDl~t~-----------------------------~~~~~l~~h~~~I~sl~~spdg~~La 737 (834)
+|.. ..|++++.|..|.+|....- ..+.++..|...|++++|+.-..+++
T Consensus 267 n~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiF 346 (370)
T KOG1007|consen 267 NPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIF 346 (370)
T ss_pred cCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeE
Confidence 9964 56778888999998854310 11335667999999999998666555
Q ss_pred -EEe-CCeEEEEEcCC
Q 003279 738 -SVS-DELVRVWSIGS 751 (834)
Q Consensus 738 -sgs-Dg~I~IwDl~s 751 (834)
+-+ ||.+.|=.+..
T Consensus 347 ASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 347 ASLSYDGRVIISSVPR 362 (370)
T ss_pred EEeccCceEEeecCCh
Confidence 445 99998876653
No 204
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.63 E-value=1.1e-15 Score=163.68 Aligned_cols=262 Identities=16% Similarity=0.266 Sum_probs=210.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeec
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 634 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~ 634 (834)
-..+.|+.+|++|+.|+..|.|-.+|..+++....+.. ...|.++.|..+..+||++ ....++|||-... .+..+.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~Gt--ElHClk 207 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDNNGT--ELHCLK 207 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecCCCc--EEeehh
Confidence 45689999999999999999999999999999888853 4569999999888888877 5678999997642 355555
Q ss_pred cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 003279 635 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVC 713 (834)
Q Consensus 635 ~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~ 713 (834)
.| ..|..+.|.|. .++|++++..|.++.-|+.+|+.+..+.. .+.+..++-+|-...+-+|...|+|.+|.....++
T Consensus 208 ~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP 285 (545)
T KOG1272|consen 208 RH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP 285 (545)
T ss_pred hc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence 44 56899999998 67999999999999999999999988876 45678888899988888999999999999999999
Q ss_pred EEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003279 714 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 792 (834)
Q Consensus 714 ~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iw 792 (834)
+..+-.|.++|.+|++.++|.|+++++ |..++|||++.. ..++++.. ......++||..| +++.+....|.||
T Consensus 286 LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~---~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw 359 (545)
T KOG1272|consen 286 LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF---YQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIW 359 (545)
T ss_pred HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccc---cccceeec-CCCcccccccccc--ceeeecCCeeeee
Confidence 988889999999999999999999999 999999999987 34444443 4566778888776 4555555689999
Q ss_pred E-CCCCe---EEEeccC--CCCeEEEEEeCCCCEEEEEecCC
Q 003279 793 N-MTENK---TLTLSAH--DKLVSSLAASTVNGMVASASHDK 828 (834)
Q Consensus 793 d-l~~~~---~~~l~~h--~~~V~~lafspdg~~LaSgs~DG 828 (834)
. .-.+. ......| .+.|..+.|.|-...|..|...|
T Consensus 360 ~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 360 KDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred hhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 4 32211 1122222 45899999999777776665544
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=7.2e-15 Score=156.77 Aligned_cols=194 Identities=23% Similarity=0.252 Sum_probs=154.8
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeec-
Q 003279 556 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT- 634 (834)
Q Consensus 556 ~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~- 634 (834)
.+++|+.+|..|++|+.||++|||+..+...+.....|.+.|.++.|+||+++|++-+.| ..+||++.++.. +....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~-~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA-LARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch-hhhcCC
Confidence 689999999999999999999999998888888888899999999999999999999999 899999998743 33222
Q ss_pred -cCCCCeEEEEEccCC---Cc-EEEEEeCCCcEEEEECCCCc------eeeEeecCCCeeEEEEecCCCEEEEEEcCCeE
Q 003279 635 -GHSTTVMSLDFHPSK---ED-LLCSCDNNSEIRYWSINNGS------CAGVFKCQSGATQMRFQPRLGRILAAAIENYI 703 (834)
Q Consensus 635 -~h~~~V~sl~fspdg---~~-llasgs~Dg~I~lwDl~s~~------~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I 703 (834)
........+.|+.++ .. +++.....+.|+.||+...+ ....+.....|.+++++.+|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 233456677787664 22 33333445667777664322 12222335689999999999999999999999
Q ss_pred EEEECCCCeEEEEEe-CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCC
Q 003279 704 SILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 751 (834)
Q Consensus 704 ~iwDl~t~~~~~~l~-~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s 751 (834)
.||+..+.+.+..++ .|...|+.+.|+||.+++++.+ |.++.|..+.-
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999987776665 4999999999999999999877 88888887654
No 206
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.62 E-value=1.2e-15 Score=172.56 Aligned_cols=270 Identities=19% Similarity=0.217 Sum_probs=202.8
Q ss_pred CcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 003279 497 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA 576 (834)
Q Consensus 497 ~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I 576 (834)
..++...+.|.+|+.|..|++|...+. .....++||.+.|+.++.+.+..++|+++.|..|
T Consensus 196 a~fDrtg~~Iitgsdd~lvKiwS~et~-------------------~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 196 AIFDRTGRYIITGSDDRLVKIWSMETA-------------------RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred eeeccccceEeecCccceeeeeeccch-------------------hhhccCCCCccccchhccchhhhhhhhcccCceE
Confidence 345666789999999999999964433 2356788999999999999999999999999999
Q ss_pred EEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC-CCc-eeeeec-cCCCCeEEEEEccCCCcEE
Q 003279 577 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-PDY-SLRTFT-GHSTTVMSLDFHPSKEDLL 653 (834)
Q Consensus 577 ~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s-~~~-~i~~~~-~h~~~V~sl~fspdg~~ll 653 (834)
++|.+.++.++..+.+|++.|++|+|+|-. +.+.||++++||.+- ... .-+... ....-+.++-|..++. -+
T Consensus 257 rvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~-~f 331 (1113)
T KOG0644|consen 257 RVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGD-RF 331 (1113)
T ss_pred EEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccc-cc
Confidence 999999999999999999999999999964 778999999999881 110 001111 1234566666766655 45
Q ss_pred EEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCC
Q 003279 654 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 732 (834)
Q Consensus 654 asgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spd 732 (834)
.+++.|+.-..|.+....+.. ..+.-+.++.+. .+.+++-.+-.+.+|++.++...+.+.+|...+..+.++|-
T Consensus 332 ~Tgs~d~ea~n~e~~~l~~~~-----~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpf 406 (1113)
T KOG0644|consen 332 LTGSRDGEARNHEFEQLAWRS-----NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPF 406 (1113)
T ss_pred ccccCCcccccchhhHhhhhc-----cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCC
Confidence 589999988888765322110 011111111111 34555666788999999999999999999999999999997
Q ss_pred CCEEEE-Ee-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 003279 733 GEYLAS-VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 798 (834)
Q Consensus 733 g~~Las-gs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~ 798 (834)
+..++- ++ ||.+.|||+-.+. .+..+......+....|+++|..++....-|.++|.....++
T Consensus 407 n~ri~msag~dgst~iwdi~eg~---pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 407 NPRIAMSAGYDGSTIIWDIWEGI---PIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred CcHhhhhccCCCceEeeecccCC---cceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 765553 34 9999999999884 343333446778889999999999999888999999876554
No 207
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.3e-13 Score=158.46 Aligned_cols=274 Identities=21% Similarity=0.223 Sum_probs=195.6
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCC---CEEEEEeCCCeEEEEecCCCCceeee
Q 003279 556 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SRLATSSADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 556 ~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg---~~Latgs~Dg~I~IWDl~s~~~~i~~ 632 (834)
..-.||+|+++++... +..|.||...++.++..+++|..+++.+.+.|.. .++++++.||.|++||...+.. +++
T Consensus 20 ~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L-lkt 97 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL-LKT 97 (792)
T ss_pred cccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE-EEE
Confidence 3457999999888776 4689999999999999999999999999998854 4788999999999999997654 555
Q ss_pred eccCCCCeEEEEEcc---CCCcEEEEEeCCCcE-EEEECCCCceeeEe-------------ecCCCeeEEEEecCCCEEE
Q 003279 633 FTGHSTTVMSLDFHP---SKEDLLCSCDNNSEI-RYWSINNGSCAGVF-------------KCQSGATQMRFQPRLGRIL 695 (834)
Q Consensus 633 ~~~h~~~V~sl~fsp---dg~~llasgs~Dg~I-~lwDl~s~~~i~~~-------------~~~~~i~~l~~sp~g~~ll 695 (834)
+..+ .+|..+.+.| +....++.+..|..+ ........+....+ .....-.++.+++.+ .+.
T Consensus 98 ~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~g-e~~ 175 (792)
T KOG1963|consen 98 FDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSG-EFK 175 (792)
T ss_pred EecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCc-eEE
Confidence 4432 3344443322 111112122222111 11111111111111 011113556666654 455
Q ss_pred EEEcCCeEEEEECCCCeEEEE----EeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCC-CCCceeEEEeecCCCceE
Q 003279 696 AAAIENYISILDVETQVCRLK----LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS-GSKGECIHELSCTGNKFH 769 (834)
Q Consensus 696 ~~s~dg~I~iwDl~t~~~~~~----l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s-~~~~~~i~~~~~~~~~I~ 769 (834)
....+..+.+|+..++..... -..|...+++.+++|++++++++. ||.|.+|.--. .........+.-|...|.
T Consensus 176 ~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~ 255 (792)
T KOG1963|consen 176 GIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVN 255 (792)
T ss_pred EEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccc
Confidence 555667888888887541111 123677789999999999999999 99999996443 223345666778899999
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 770 SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 770 svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
+++|+++|.+|++||.++.+.+|.+.+++..-+..-.++|..+.++||+.+.+....|..|.+-
T Consensus 256 ~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li 319 (792)
T KOG1963|consen 256 SLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLI 319 (792)
T ss_pred eeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEE
Confidence 9999999999999999999999999999977777888999999999999999999999998763
No 208
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=1.9e-13 Score=156.45 Aligned_cols=235 Identities=14% Similarity=0.060 Sum_probs=160.8
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCC
Q 003279 574 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 650 (834)
Q Consensus 574 g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~ 650 (834)
..|.+||.+ +.....+..+...+.+.+|+||++.|+..+.+ ..|++||+.++.. ..+....+.+.+.+|+||+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--RVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 467777764 44445556778889999999999999887753 3599999987653 23333445667899999999
Q ss_pred cEEEEEeCCCcEEEE--ECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc-CCe--EEEEECCCCeEEEEEeCCCCCEE
Q 003279 651 DLLCSCDNNSEIRYW--SINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENY--ISILDVETQVCRLKLQGHKNQVH 725 (834)
Q Consensus 651 ~llasgs~Dg~I~lw--Dl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg~--I~iwDl~t~~~~~~l~~h~~~I~ 725 (834)
.++++.+.++...+| |+..+.......+........|+|+|+.|++++. ++. |+++|+.++..... ..+.....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l-t~~g~~~~ 331 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV-TFTGSYNT 331 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE-ecCCCCcC
Confidence 888888878765555 5555543333223334567889999999887765 344 44455555543222 22233345
Q ss_pred EEEEcCCCCEEEEEe-CC---eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCe
Q 003279 726 SVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 798 (834)
Q Consensus 726 sl~~spdg~~Lasgs-Dg---~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg---~I~Iwdl~~~~ 798 (834)
..+|+|||++|+..+ ++ .|++||+.++.. . .+.. ......+.|+|+|+.|+.++.++ .+++.++....
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~---~-~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~ 406 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQV---T-ALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRI 406 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCe---E-EccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCc
Confidence 689999999998776 33 699999987632 1 2222 22346789999999998887655 57777886544
Q ss_pred EEEeccCCCCeEEEEEeCC
Q 003279 799 TLTLSAHDKLVSSLAASTV 817 (834)
Q Consensus 799 ~~~l~~h~~~V~~lafspd 817 (834)
...+..+.+.+...+|+|-
T Consensus 407 ~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 407 KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eEEeecCCCCCCCCccCCC
Confidence 4456667788888899873
No 209
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=8.9e-14 Score=145.86 Aligned_cols=285 Identities=14% Similarity=0.150 Sum_probs=211.2
Q ss_pred CCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEec-CCCCCeEEEEEcCCCCEEEEEeCC
Q 003279 495 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHD 573 (834)
Q Consensus 495 ~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~-gH~~~V~sl~fSpdg~~Lasgs~D 573 (834)
.+..+..-++|+++|+.|..+++|........ . +-+++.... .|...|.|++|....++|++|+.+
T Consensus 60 NAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~----------k---~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 60 NALQFSHNDRFLASGGDDMHGRVWNVDELMVR----------K---TPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred ceeeeccCCeEEeecCCcceeeeechHHHHhh----------c---CCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 33444445699999999999999954332111 0 112233332 466899999999999999999999
Q ss_pred CcEEEEeCCCCeEEEEecc--CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCcee--eeeccCCCCeEEEEEccCC
Q 003279 574 KKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSK 649 (834)
Q Consensus 574 g~I~IWd~~t~~~~~~l~~--h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i--~~~~~h~~~V~sl~fspdg 649 (834)
++|.+.|+++.+.+..+.. ..+.|+.+..+|..+.|++.+.++.|.+||++.....+ ............+.|+|..
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 9999999999988877742 23489999999999999999999999999998654322 2233345667889999999
Q ss_pred CcEEEEEeCCCcEEEEECCCCce-eeEeec-------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEE-EEEeCC
Q 003279 650 EDLLCSCDNNSEIRYWSINNGSC-AGVFKC-------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCR-LKLQGH 720 (834)
Q Consensus 650 ~~llasgs~Dg~I~lwDl~s~~~-i~~~~~-------~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~-~~l~~h 720 (834)
..+|++.+..+-+.+||++.... +..+.. ...-..+.|+|.|+.|++.-....-.+||+-+..+. ..+. |
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~ 285 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-H 285 (609)
T ss_pred ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-C
Confidence 99999999999999999986432 211111 122367899999999999888888888998875543 3333 3
Q ss_pred C-------CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC--------------------ceeEEEeecCCCceEEEE
Q 003279 721 K-------NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK--------------------GECIHELSCTGNKFHSCV 772 (834)
Q Consensus 721 ~-------~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~--------------------~~~i~~~~~~~~~I~sva 772 (834)
. ..+.+++|..|-. +++|+ +-.|++|.+..... ...+..+.+|...++.+.
T Consensus 286 N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVR 364 (609)
T KOG4227|consen 286 NPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVR 364 (609)
T ss_pred CCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccccee
Confidence 2 2456778865544 78888 55899999853210 123446788999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEEC
Q 003279 773 FHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 773 fspdg~~L~sgs~dg~I~Iwdl 794 (834)
|+|....|++.+-.+.++||.-
T Consensus 365 F~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 365 FSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred ecCCcceEeccchhhheecccc
Confidence 9999999999999999999964
No 210
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.60 E-value=1.4e-13 Score=151.74 Aligned_cols=239 Identities=15% Similarity=0.241 Sum_probs=172.5
Q ss_pred EcCCCCEEEE--EeCCCcEEEEeCCC-CeEE----EEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCCc---
Q 003279 560 FSPDGKLLAT--GGHDKKAVLWCTES-FTVK----STLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDY--- 628 (834)
Q Consensus 560 fSpdg~~Las--gs~Dg~I~IWd~~t-~~~~----~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~s~~~--- 628 (834)
|+.+.+++|+ ++..|.|-||++.. |+.. -.+ .....|+++.|.| |...|++++.||.|++|.+..+..
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 3344556654 45578999999874 2222 122 2445799999999 778999999999999999976543
Q ss_pred ---eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEE
Q 003279 629 ---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYIS 704 (834)
Q Consensus 629 ---~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~ 704 (834)
+...+..|...|+++.|+|-...+|++++.|.+|++||+.+++....+. |.+.|..++|+|+|+.+++.+.||+|+
T Consensus 666 ~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r 745 (1012)
T KOG1445|consen 666 EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR 745 (1012)
T ss_pred cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence 3467788999999999999888899999999999999999988776665 467799999999999999999999999
Q ss_pred EEECCCCe-EEEEEeCCC-CCEEEEEEcCCCCEEEEEe-CC----eEEEEEcCCCCCceeEEEeec-CCCceEEEEEeCC
Q 003279 705 ILDVETQV-CRLKLQGHK-NQVHSVCWNTSGEYLASVS-DE----LVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPT 776 (834)
Q Consensus 705 iwDl~t~~-~~~~l~~h~-~~I~sl~~spdg~~Lasgs-Dg----~I~IwDl~s~~~~~~i~~~~~-~~~~I~svafspd 776 (834)
+|+.++++ .+..-.+.. ..--.|.|.-||+++++.+ |. .|.+||..+-.. ..+.+... ....+.--.+.+|
T Consensus 746 Vy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~-~pl~t~~lDvaps~LvP~YD~D 824 (1012)
T KOG1445|consen 746 VYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL-RPLYTQVLDVAPSPLVPHYDYD 824 (1012)
T ss_pred EeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC-CcceeeeecccCccccccccCC
Confidence 99998764 343333211 2234677888999888876 54 788998776431 12222111 1112222345666
Q ss_pred CCEE-EEEEcCCeEEEEECCCCeEE
Q 003279 777 FPSL-LVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 777 g~~L-~sgs~dg~I~Iwdl~~~~~~ 800 (834)
...| ++|-.|..|++|.+-.....
T Consensus 825 s~~lfltGKGD~~v~~yEv~~esPy 849 (1012)
T KOG1445|consen 825 SNVLFLTGKGDRFVNMYEVIYESPY 849 (1012)
T ss_pred CceEEEecCCCceEEEEEecCCCce
Confidence 6554 45566779999998655443
No 211
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.59 E-value=1.4e-14 Score=157.29 Aligned_cols=207 Identities=14% Similarity=0.133 Sum_probs=166.3
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEE
Q 003279 565 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 644 (834)
Q Consensus 565 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~ 644 (834)
..|+.++.||.+.|.+ +.++....+..|.+.|.|-.|+|||.-|+|+++||.|++|.-.. ....++.....+|.|++
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG--MLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG--MLRSTVVQNEESIRCAR 152 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc--hHHHHHhhcCceeEEEE
Confidence 4688888999999987 66788888999999999999999999999999999999998653 22344555678999999
Q ss_pred EccCCCcEEEEEeCCCcEEEEECCCCc-eeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCC
Q 003279 645 FHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 723 (834)
Q Consensus 645 fspdg~~llasgs~Dg~I~lwDl~s~~-~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~ 723 (834)
|.|+.+.++++.+ +.+.+=.+.... .++--.|.+-|.++.|++..+.+++|+.|-..+|||.. |..++.-..|..+
T Consensus 153 W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 153 WAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYA 229 (737)
T ss_pred ECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccc
Confidence 9999998887764 456665555443 44444456668999999999999999999999999976 4566666679999
Q ss_pred EEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003279 724 VHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 792 (834)
Q Consensus 724 I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iw 792 (834)
|++++|.|+ +.++.++-+++++=.. ..+.|..++|++||..+++|+..|.+.+-
T Consensus 230 ITSva~npd-~~~~v~S~nt~R~~~p--------------~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 230 ITSVAFNPE-KDYLLWSYNTARFSSP--------------RVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeeeeeccc-cceeeeeeeeeeecCC--------------CccceEEEEEcCCCceeeccccCceEEEe
Confidence 999999999 6677777666662222 34678899999999999999999966543
No 212
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.59 E-value=6.3e-14 Score=152.73 Aligned_cols=244 Identities=15% Similarity=0.194 Sum_probs=165.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE----EEEeccCCCCeEEEEEC-----CCCCEEEEEeCCCeEEEEecC
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTV----KSTLEEHTQWITDVRFS-----PSLSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~----~~~l~~h~~~I~~l~fs-----pdg~~Latgs~Dg~I~IWDl~ 624 (834)
.+....++-.|++|+..-. ..+++|+...+.. +....-.....+|-+|+ +++--|+.|-..|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 3555556667777766543 4688888764222 11111111223444442 346668888888999998876
Q ss_pred CCCceeeee----ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcC
Q 003279 625 NPDYSLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 625 s~~~~i~~~----~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d 700 (834)
..+. .+.+ .-....|+|+.|-|.++.+|..+-.+|.+++||.+- .......+....+++..+.+....
T Consensus 204 ~~~~-sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~t~p~~~~~k~~~~f~i~t~k 275 (636)
T KOG2394|consen 204 NFEV-SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGATAPSYQALKDGDQFAILTSK 275 (636)
T ss_pred hhHH-HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccCCCCcccccCCCCeeEEeeee
Confidence 5221 1111 112478999999999999998999999999999831 111222222233444444333321
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003279 701 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 779 (834)
Q Consensus 701 g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~ 779 (834)
+. .+..++..+.--.+.|..++|+|||++||+.+ ||.++|||+.+. +.+...+.--+...||+|+|||++
T Consensus 276 sk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---eLlg~mkSYFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 276 SK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---ELLGVMKSYFGGLLCVCWSPDGKY 346 (636)
T ss_pred cc------ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH---HHHHHHHhhccceEEEEEcCCccE
Confidence 11 11133333333456899999999999999999 999999999886 444445555678899999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEe
Q 003279 780 LLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS 815 (834)
Q Consensus 780 L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafs 815 (834)
|++|+.|.-|.||.+..++++ +-.+|+.+|+.|+|.
T Consensus 347 IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 999999999999999999998 667999999999998
No 213
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=2e-12 Score=133.71 Aligned_cols=232 Identities=15% Similarity=0.229 Sum_probs=164.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEE-eCC------CeEEEEecCCCC
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SAD------RTVRVWDTENPD 627 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~D------g~I~IWDl~s~~ 627 (834)
..+++|+.|...+++|..+ -.+||+++..+.......+.+.+.-+...-..++|+.. +.+ ..|.|||-.. .
T Consensus 8 ~lsvs~NQD~ScFava~~~-Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k-~ 85 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDT-GFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK-E 85 (346)
T ss_pred eeEEEEccCCceEEEEecC-ceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc-C
Confidence 4559999999999988765 48999988755543333233322222222233455543 332 4799999443 3
Q ss_pred ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC-CCceeeEeec---CCCeeEEEEecCCCEEEEEEc-CCe
Q 003279 628 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKC---QSGATQMRFQPRLGRILAAAI-ENY 702 (834)
Q Consensus 628 ~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~-s~~~i~~~~~---~~~i~~l~~sp~g~~ll~~s~-dg~ 702 (834)
.++..+. ...+|.+|.+.++ .++++- ++.|+||... +-+.+..+.. +.+..+++-+.....|+.-+. -|.
T Consensus 86 ~~i~el~-f~~~I~~V~l~r~--riVvvl--~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRRD--RIVVVL--ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred cEEEEEE-eccceeeEEEcCC--eEEEEe--cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 3444444 6788999999976 244333 7899999987 4555555554 344444444444444444443 489
Q ss_pred EEEEECCCCeE--EEEEeCCCCCEEEEEEcCCCCEEEEEe-CC-eEEEEEcCCCCCceeEEEeec--CCCceEEEEEeCC
Q 003279 703 ISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSC--TGNKFHSCVFHPT 776 (834)
Q Consensus 703 I~iwDl~t~~~--~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg-~I~IwDl~s~~~~~~i~~~~~--~~~~I~svafspd 776 (834)
|.|.|+...+. ...+..|.+.|.|++.+-+|..+|+++ .| .|+|||..++ ..+.++.. ....|.+++|+|+
T Consensus 161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g---~~l~E~RRG~d~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG---TLLQELRRGVDRADIYCIAFSPN 237 (346)
T ss_pred EEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC---cEeeeeecCCchheEEEEEeCCC
Confidence 99999987655 477888999999999999999999999 66 6999999999 56666654 3467999999999
Q ss_pred CCEEEEEEcCCeEEEEECCC
Q 003279 777 FPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 777 g~~L~sgs~dg~I~Iwdl~~ 796 (834)
..+|++++..|+|+||.++.
T Consensus 238 ~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 238 SSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred ccEEEEEcCCCeEEEEEeec
Confidence 99999999999999998865
No 214
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.59 E-value=1.9e-11 Score=136.10 Aligned_cols=261 Identities=12% Similarity=0.126 Sum_probs=183.0
Q ss_pred CeEEEEEcCCCCEEEEEeC----CCcEEEEeCCCC--e--EEEEeccCCCCeEEEEECCCCCEEEEEeC-CCeEEEEecC
Q 003279 554 KVESCHFSPDGKLLATGGH----DKKAVLWCTESF--T--VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTE 624 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~----Dg~I~IWd~~t~--~--~~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~ 624 (834)
.-..++++|++++|+++.. ++.|..|++... . .+............++++|++++|+++.. +|.|.++++.
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 3567899999999999877 468999887653 3 33444434455678999999999999875 8999999998
Q ss_pred CCCceeee--ec-----------cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc--eee----EeecCCCeeEE
Q 003279 625 NPDYSLRT--FT-----------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAG----VFKCQSGATQM 685 (834)
Q Consensus 625 s~~~~i~~--~~-----------~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~--~i~----~~~~~~~i~~l 685 (834)
........ .. .......++.|+|++++++++.-....|.+|++.... ... .+....+...+
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~ 197 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHL 197 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEE
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEE
Confidence 75322211 11 1235578999999999887766556689999997655 322 22346778999
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECC--CCe--EEEEEeC------CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcC-C
Q 003279 686 RFQPRLGRILAAAI-ENYISILDVE--TQV--CRLKLQG------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIG-S 751 (834)
Q Consensus 686 ~~sp~g~~ll~~s~-dg~I~iwDl~--t~~--~~~~l~~------h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~-s 751 (834)
.|+|+++++++..+ ++.|.+|++. ++. .+..+.. .......|+++|||++|+++. ++.|.+|++. .
T Consensus 198 ~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~ 277 (345)
T PF10282_consen 198 AFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA 277 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT
T ss_pred EEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC
Confidence 99999999888876 5789999988 442 2223321 112678999999999999887 7799999994 3
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEC--CCCeEEEec--cCCCCeEEEEE
Q 003279 752 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNM--TENKTLTLS--AHDKLVSSLAA 814 (834)
Q Consensus 752 ~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d-g~I~Iwdl--~~~~~~~l~--~h~~~V~~laf 814 (834)
......+..+.........++++|+|++|+++..+ +.|.+|++ ++|.+.... ..-....||.|
T Consensus 278 ~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 278 TGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 33446666677667778999999999999998864 48888865 567655332 23445666665
No 215
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=5.5e-13 Score=152.68 Aligned_cols=223 Identities=17% Similarity=0.179 Sum_probs=153.1
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEE-EEeCCCeEEEEe
Q 003279 547 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWD 622 (834)
Q Consensus 547 ~l~gH~~~V~sl~fSpdg~~Lasgs~D---g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~La-tgs~Dg~I~IWD 622 (834)
.+..+...|.+.+|+|||+.|+.++.+ ..|++||+.+++... +....+.+.+.+|+|||+.|+ +.+.++...||.
T Consensus 190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 268 (427)
T PRK02889 190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT 268 (427)
T ss_pred EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence 344677789999999999999887753 359999999887643 333445677899999999886 467788766666
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE--CCCCceeeEeecCCCeeEEEEecCCCEEEEEEcC
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS--INNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwD--l~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d 700 (834)
++........+..+...+....|+|||+.+++++..++...+|. +.++................|+|+|++|+.++.+
T Consensus 269 ~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~ 348 (427)
T PRK02889 269 VNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRV 348 (427)
T ss_pred EECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEcc
Confidence 54322224555556666778899999998887766566666664 4555443333222334568899999999888765
Q ss_pred C---eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003279 701 N---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVF 773 (834)
Q Consensus 701 g---~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~svaf 773 (834)
+ .|.+||+.++.... +.. ......+.|+|||++|+.++ .+ .+++.++. + .....+..+.+.+...+|
T Consensus 349 ~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g---~~~~~l~~~~g~~~~p~w 422 (427)
T PRK02889 349 GGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G---RIKQRLSVQGGDVREPSW 422 (427)
T ss_pred CCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-C---CceEEeecCCCCCCCCcc
Confidence 4 69999999886543 322 23446789999999988877 33 46666663 3 233344445566777788
Q ss_pred eCC
Q 003279 774 HPT 776 (834)
Q Consensus 774 spd 776 (834)
+|-
T Consensus 423 sp~ 425 (427)
T PRK02889 423 GPF 425 (427)
T ss_pred CCC
Confidence 764
No 216
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=1.9e-13 Score=158.40 Aligned_cols=248 Identities=15% Similarity=0.210 Sum_probs=177.1
Q ss_pred CCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEeCC-----CCeEEEEecc-------CCCCeEEEEECCCCCEEEEEeCC
Q 003279 550 ASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTE-----SFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSAD 615 (834)
Q Consensus 550 gH~~~V~sl~fSp--dg~~Lasgs~Dg~I~IWd~~-----t~~~~~~l~~-------h~~~I~~l~fspdg~~Latgs~D 615 (834)
.....|+.+.+-. |..+|++|+.||.|+||+-. +.+.+..+.+ ..+.=.-+.|.....+|++++.-
T Consensus 1107 ~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~ 1186 (1387)
T KOG1517|consen 1107 FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDV 1186 (1387)
T ss_pred CCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCe
Confidence 3456799998866 55689999999999999532 2233333221 11111345677666677777778
Q ss_pred CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc---eeeEee-cCCC--eeEEEEec
Q 003279 616 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFK-CQSG--ATQMRFQP 689 (834)
Q Consensus 616 g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~---~i~~~~-~~~~--i~~l~~sp 689 (834)
..|+|||......+...-.+....|+++.-+-....++++|-.||.|++||.+... .+..++ +... |..+.+.+
T Consensus 1187 r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~ 1266 (1387)
T KOG1517|consen 1187 RSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQR 1266 (1387)
T ss_pred eEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeec
Confidence 89999999986655555555667788887766666788899999999999998643 233333 2333 88889988
Q ss_pred CCC-EEEEEEcCCeEEEEECCCCeE--EEEEeCCC---CCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEE---
Q 003279 690 RLG-RILAAAIENYISILDVETQVC--RLKLQGHK---NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE--- 760 (834)
Q Consensus 690 ~g~-~ll~~s~dg~I~iwDl~t~~~--~~~l~~h~---~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~--- 760 (834)
.|- .|++|+.+|.|++||++.... ...+..|- +.++++..++...++|+|+.+.|+||++..... ..+..
T Consensus 1267 ~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l-~~~k~n~~ 1345 (1387)
T KOG1517|consen 1267 QGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQL-NIIKYNPG 1345 (1387)
T ss_pred CCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhh-cccccCcc
Confidence 554 599999999999999998422 22222222 358999999999999999999999999876422 11111
Q ss_pred -eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 003279 761 -LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 798 (834)
Q Consensus 761 -~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~ 798 (834)
.....+.+.|++|||..-.+++|..|..|.||......
T Consensus 1346 F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1346 FMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 11124567999999999999999999999999876543
No 217
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.57 E-value=3.3e-13 Score=143.17 Aligned_cols=282 Identities=13% Similarity=0.117 Sum_probs=186.1
Q ss_pred CCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEE
Q 003279 490 GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLAT 569 (834)
Q Consensus 490 ~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Las 569 (834)
+..++...++.....++++|+.++.+-+|...+.... + ...-.......+...+.+.+|...|..++|+||+.++++
T Consensus 64 H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~-~--~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s 140 (434)
T KOG1009|consen 64 HTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF-D--ADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVS 140 (434)
T ss_pred CcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc-c--ccchhhhCccceEEEEEecccccchhhhhccCCCceeee
Confidence 4455555555666689999999999999977652111 0 000011113346667888999999999999999999999
Q ss_pred EeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCC
Q 003279 570 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 649 (834)
Q Consensus 570 gs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg 649 (834)
++.|..+++||+..|.....+.+|...|..++|.|-+.++++-+.|...+++.+..... +.++...
T Consensus 141 ~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~-----------~~~~~~~--- 206 (434)
T KOG1009|consen 141 GSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV-----------IKRHGLD--- 206 (434)
T ss_pred eeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeee-----------eeeeeee---
Confidence 99999999999999999999999999999999999999999999998777777654321 1111110
Q ss_pred CcEEEEEeCC---CcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc----CC-----eEEEEECCC-CeEEEE
Q 003279 650 EDLLCSCDNN---SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI----EN-----YISILDVET-QVCRLK 716 (834)
Q Consensus 650 ~~llasgs~D---g~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~----dg-----~I~iwDl~t-~~~~~~ 716 (834)
.+.+-.+.. ...++|.=++.+ .-...++|+|+|..+++.+. ++ ..++|+-.. .++...
T Consensus 207 -~m~~~~~~~~e~~s~rLfhDeTlk--------sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~ 277 (434)
T KOG1009|consen 207 -IMPAKAFNEREGKSTRLFHDETLK--------SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAAR 277 (434)
T ss_pred -EeeecccCCCCcceeeeeecCchh--------hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceee
Confidence 011111111 122333222221 22445667777776665442 12 234554332 234444
Q ss_pred EeCCCCCEEEEEEcC------------------CCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 003279 717 LQGHKNQVHSVCWNT------------------SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 778 (834)
Q Consensus 717 l~~h~~~I~sl~~sp------------------dg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~ 778 (834)
+.....++..+.|+| .+..++.++.+.|+|||........++ -..|-..|+.++|+++|.
T Consensus 278 lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v--~nihy~~iTDiaws~dg~ 355 (434)
T KOG1009|consen 278 LPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVV--DNIHYSAITDIAWSDDGS 355 (434)
T ss_pred cCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEE--eeeeeeeecceeecCCCc
Confidence 444444444444443 344567777889999999886432222 344678999999999999
Q ss_pred EEEEEEcCCeEEEEECCCCeE
Q 003279 779 SLLVIGCYETLELWNMTENKT 799 (834)
Q Consensus 779 ~L~sgs~dg~I~Iwdl~~~~~ 799 (834)
.+++.+.||...+..++..+.
T Consensus 356 ~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 356 VLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred EEEEeccCCceEEEEEcchhc
Confidence 999999999766666655443
No 218
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.57 E-value=2e-13 Score=140.89 Aligned_cols=228 Identities=18% Similarity=0.289 Sum_probs=177.8
Q ss_pred eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC--ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 003279 590 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 667 (834)
Q Consensus 590 l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~--~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl 667 (834)
+....++|+|.+|++|...+|++-....|.||...... ....++..|...|++|+|.|..++|+ +|+.|..-++|..
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv-tcs~drnayVw~~ 84 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV-TCSHDRNAYVWTQ 84 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee-EccCCCCcccccc
Confidence 33455789999999999999999999999999988765 35688899999999999999977555 9999999999999
Q ss_pred -CCCc---eeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEE----EEEeCCCCCEEEEEEcCCCCEEEEE
Q 003279 668 -NNGS---CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR----LKLQGHKNQVHSVCWNTSGEYLASV 739 (834)
Q Consensus 668 -~s~~---~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~----~~l~~h~~~I~sl~~spdg~~Lasg 739 (834)
..++ .+..+.++..++++.|+|.++.|++++....|.||-.+....- ..-+.+...|+++.|+|++-+|++|
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 4443 2334456788999999999999999999999999887654221 2223467789999999999999999
Q ss_pred e-CCeEEEEEcC-----CCC----------CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe--EEE
Q 003279 740 S-DELVRVWSIG-----SGS----------KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--TLT 801 (834)
Q Consensus 740 s-Dg~I~IwDl~-----s~~----------~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~--~~~ 801 (834)
+ |+..+||..- ... ....+.++....+.+..+.|+|+|..|+..+.|..+.+-|..... +..
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccc
Confidence 9 9999988642 110 012334454567889999999999999999999999999987765 333
Q ss_pred eccCCCCeEEEEEeCCC
Q 003279 802 LSAHDKLVSSLAASTVN 818 (834)
Q Consensus 802 l~~h~~~V~~lafspdg 818 (834)
+....-+..++.|-.+.
T Consensus 245 ~~~~~lP~ls~~~ise~ 261 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISEN 261 (361)
T ss_pred hhhccCCceeeEeecCC
Confidence 33333666777765543
No 219
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=2.6e-13 Score=143.41 Aligned_cols=261 Identities=15% Similarity=0.209 Sum_probs=199.9
Q ss_pred CCCCeEEEEEcCCCC--EEEEEeCCCcEEEEeCCCCeEEEE------eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 551 STSKVESCHFSPDGK--LLATGGHDKKAVLWCTESFTVKST------LEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 551 H~~~V~sl~fSpdg~--~Lasgs~Dg~I~IWd~~t~~~~~~------l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
-...|+.++|.-|++ .|...+.|..+..+++....+... .....++|..++.. ...|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 345688888877665 344444666777777766555433 34456677777765 33788889999999999
Q ss_pred cCCCCc---eeeeeccCCCCeEEEEEccCCCcEEEEEeCC--CcEEEEECCCCceeeEeec----------CCCeeEEEE
Q 003279 623 TENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKC----------QSGATQMRF 687 (834)
Q Consensus 623 l~s~~~---~i~~~~~h~~~V~sl~fspdg~~llasgs~D--g~I~lwDl~s~~~i~~~~~----------~~~i~~l~~ 687 (834)
...+.. ++..+. ....+..+.-++...+++++|+.. ..+.+||++..+.+..-+. +--++.+.|
T Consensus 132 ~k~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred ccCCccccccceeee-cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 985431 122333 235677788888888899999998 8999999998866654432 123677888
Q ss_pred ecC--CCEEEEEEcCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEE-Eee
Q 003279 688 QPR--LGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH-ELS 762 (834)
Q Consensus 688 sp~--g~~ll~~s~dg~I~iwDl~t~-~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~-~~~ 762 (834)
.+. ...|++++.-+.+++||.+.+ +++..|.-...+|+++...|++++|+++. -+.+..||++.+ ..+. .+.
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~---kl~g~~~k 287 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG---KLLGCGLK 287 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCc---eeeccccC
Confidence 887 788999999999999999987 67888887888999999999999999999 889999999988 3333 377
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCC
Q 003279 763 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV 817 (834)
Q Consensus 763 ~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspd 817 (834)
+-.+.|.++..+|.+++|++++-|..|+|+|+++.+++.-..-...+++|-+.++
T Consensus 288 g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 288 GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 7789999999999999999999999999999999777644444556677766543
No 220
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=3.7e-13 Score=143.80 Aligned_cols=191 Identities=14% Similarity=0.105 Sum_probs=149.2
Q ss_pred EEEEEccCCCcEEEEEeCCCcEEEEECCCCc-eeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 003279 641 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 719 (834)
Q Consensus 641 ~sl~fspdg~~llasgs~Dg~I~lwDl~s~~-~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~ 719 (834)
.+++|+.+|. .+++++.||++|+|+..+.. ......++..|.++.|+||++.|++.+.| ..+||+++++.++.....
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 6789998866 78899999999999966544 44555678999999999999999999999 999999999977666552
Q ss_pred --CCCCEEEEEEcCCC---CEEEEEe---CCeEEEEEcCCCCCce--eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003279 720 --HKNQVHSVCWNTSG---EYLASVS---DELVRVWSIGSGSKGE--CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 789 (834)
Q Consensus 720 --h~~~I~sl~~spdg---~~Lasgs---Dg~I~IwDl~s~~~~~--~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I 789 (834)
.+..+..+.|+.|+ .+++.+. -+.|+.||+....... ...........|.+++.+++|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 23345677888776 3333333 4577777775443211 222333345689999999999999999999999
Q ss_pred EEEECCCCeEEE--eccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 790 ELWNMTENKTLT--LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 790 ~Iwdl~~~~~~~--l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
-|++..+-+.+. ...|...|+.+.|+||.+++++.+.|..+.|.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence 999999988773 44899999999999999999998888877653
No 221
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=7.9e-13 Score=151.33 Aligned_cols=220 Identities=17% Similarity=0.160 Sum_probs=155.0
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEE-eCCC--eEEEE
Q 003279 548 IPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADR--TVRVW 621 (834)
Q Consensus 548 l~gH~~~V~sl~fSpdg~~Lasgs~---Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg--~I~IW 621 (834)
+..+...+.+.+|||||+.|+..+. +..|++|++.+++... +....+.+..++|+|||+.|+.. +.+| .|++|
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 272 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence 3456678999999999999987653 3579999998876443 22333445678999999988865 4444 58899
Q ss_pred ecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCc--EEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc
Q 003279 622 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 699 (834)
Q Consensus 622 Dl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~--I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~ 699 (834)
|+.++. ...+..+...+....|+|+++.++++...++. |+++|+.++................|+|+|++|++.+.
T Consensus 273 d~~tg~--~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 273 DLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred ECCCCC--EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEc
Confidence 998765 34445555678899999999988777765554 55557776655443333344567899999999988765
Q ss_pred C---CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CC---eEEEEEcCCCCCceeEEEeecCCCceEEEE
Q 003279 700 E---NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCV 772 (834)
Q Consensus 700 d---g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg---~I~IwDl~s~~~~~~i~~~~~~~~~I~sva 772 (834)
+ ..|.+||+.++... .+.. ........|+|||++|+.++ ++ .+.++++... ....+..+...+...+
T Consensus 351 ~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~----~~~~l~~~~~~~~~p~ 424 (429)
T PRK03629 351 NGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR----FKARLPATDGQVKFPA 424 (429)
T ss_pred cCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC----CeEECccCCCCcCCcc
Confidence 4 36889999888644 3332 12345688999999998887 54 4777787543 3445556677788888
Q ss_pred EeCC
Q 003279 773 FHPT 776 (834)
Q Consensus 773 fspd 776 (834)
|+|-
T Consensus 425 Wsp~ 428 (429)
T PRK03629 425 WSPY 428 (429)
T ss_pred cCCC
Confidence 8873
No 222
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.55 E-value=3.2e-11 Score=134.27 Aligned_cols=267 Identities=14% Similarity=0.182 Sum_probs=183.8
Q ss_pred EEEEeCC----CcEEEEeC--CCCeEE--EEeccCCCCeEEEEECCCCCEEEEEeC----CCeEEEEecCCC--Cc-eee
Q 003279 567 LATGGHD----KKAVLWCT--ESFTVK--STLEEHTQWITDVRFSPSLSRLATSSA----DRTVRVWDTENP--DY-SLR 631 (834)
Q Consensus 567 Lasgs~D----g~I~IWd~--~t~~~~--~~l~~h~~~I~~l~fspdg~~Latgs~----Dg~I~IWDl~s~--~~-~i~ 631 (834)
+++|+.+ +.|++|++ ++++.. ..+ ........++++|++++|+++.. ++.|..|++... .. .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4566666 68998877 455443 222 23445678999999999999887 469999998864 22 122
Q ss_pred eeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-CceeeE---ee-----------cCCCeeEEEEecCCCEEEE
Q 003279 632 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGV---FK-----------CQSGATQMRFQPRLGRILA 696 (834)
Q Consensus 632 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s-~~~i~~---~~-----------~~~~i~~l~~sp~g~~ll~ 696 (834)
...........++++|+++.++++...+|.|.++++.. +..... +. ......++.++|+++++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 33324456678999999998888777899999999987 443332 21 1345789999999999988
Q ss_pred EEcC-CeEEEEECCCCe--E--EEEEe-CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC-CCceeEEEeecC---
Q 003279 697 AAIE-NYISILDVETQV--C--RLKLQ-GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSCT--- 764 (834)
Q Consensus 697 ~s~d-g~I~iwDl~t~~--~--~~~l~-~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~-~~~~~i~~~~~~--- 764 (834)
.... ..|.+|++.... . ...+. ........++|+|+++++++.. ++.|.+|++... .....+..+...
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 8764 689999997654 2 22222 3456788999999999998877 789999999822 122333333321
Q ss_pred ---CCceEEEEEeCCCCEEEEEEc-CCeEEEEECC--CCeEE---EeccCCCCeEEEEEeCCCCEEEEEe-cCCcEEEeC
Q 003279 765 ---GNKFHSCVFHPTFPSLLVIGC-YETLELWNMT--ENKTL---TLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 834 (834)
Q Consensus 765 ---~~~I~svafspdg~~L~sgs~-dg~I~Iwdl~--~~~~~---~l~~h~~~V~~lafspdg~~LaSgs-~DG~I~IWd 834 (834)
......++++|||++|+++.. .+.|.+|+++ ++++. .+.......+.++++|+|++|++++ .++.|.+|+
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 125788999999999998775 4589999983 34433 2333345689999999999998887 566788874
No 223
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.9e-12 Score=142.51 Aligned_cols=267 Identities=18% Similarity=0.276 Sum_probs=175.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEE-----eCC-----CeEEEEe
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-----SAD-----RTVRVWD 622 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-----s~D-----g~I~IWD 622 (834)
.++...++|++|+++|.+. +..|+|++..++..+.+...- .++++.|+|-+.+|.|= ..+ -.+.+|+
T Consensus 35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 3477889999999888775 578999999988655444333 78999999999988762 112 3577999
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCe--------------------
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-------------------- 682 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i-------------------- 682 (834)
+++ ......+......-+++.|+.|.. +. +--..+.+.+|++.+.+.+..--+..++
T Consensus 112 vet-~~~~s~~q~k~Q~~W~~qfs~dEs-l~-arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 112 VET-GVQRSQIQKKMQNGWVPQFSIDES-LA-ARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred ecc-ceehhheehhhhcCcccccccchh-hh-hhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccC
Confidence 988 332333322222225777777643 21 1112445666665543221111111112
Q ss_pred --------------------------------eEEEEecCCCEEEEE-Ec--C---------CeEEEEECCCCeEEEEEe
Q 003279 683 --------------------------------TQMRFQPRLGRILAA-AI--E---------NYISILDVETQVCRLKLQ 718 (834)
Q Consensus 683 --------------------------------~~l~~sp~g~~ll~~-s~--d---------g~I~iwDl~t~~~~~~l~ 718 (834)
..+.|++.+.-|++. +. | ..++++++....++..+.
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~ 268 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL 268 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence 234455544433322 21 2 257777777445555554
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEE
Q 003279 719 GHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELW 792 (834)
Q Consensus 719 ~h~~~I~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg---~I~Iw 792 (834)
..++|++++|+++++-++++. -.++.|||++.. .+.. ...++-+++-|+|.|++|+.+|.++ .|.||
T Consensus 269 -k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~----~v~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvw 341 (566)
T KOG2315|consen 269 -KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK----PVFD--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVW 341 (566)
T ss_pred -CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC----EeEe--CCCCCccceEECCCCCEEEEeecCCCCCceEEE
Confidence 578999999999998777665 669999998753 4443 3467788999999999999998864 89999
Q ss_pred ECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEec------CCcEEEeC
Q 003279 793 NMTENKTL-TLSAHDKLVSSLAASTVNGMVASASH------DKCVKIWK 834 (834)
Q Consensus 793 dl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~------DG~I~IWd 834 (834)
|+.+.+.+ .+... .-+-+.|+|||.+|+|++. |+.++||+
T Consensus 342 Dv~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 342 DVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred eccchhhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 99997776 33332 3445889999999998874 78899995
No 224
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.55 E-value=1.6e-12 Score=148.24 Aligned_cols=232 Identities=16% Similarity=0.132 Sum_probs=163.2
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCC
Q 003279 574 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 650 (834)
Q Consensus 574 g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~ 650 (834)
..|.++|..... ...+..+...+.+.+|+||+++|+.++.+ ..|++||+.++.. ..+..+...+.+++|+|+++
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 368888876443 44555677789999999999999988754 4799999987653 33344556677899999999
Q ss_pred cEEEEEeCCC--cEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEEeCCCCCEE
Q 003279 651 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVH 725 (834)
Q Consensus 651 ~llasgs~Dg--~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d-g--~I~iwDl~t~~~~~~l~~h~~~I~ 725 (834)
.++++.+.++ .|++||+.++................|+|+++.|++++.. + .|+++|+.+++.. .+..+...+.
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~ 325 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA 325 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence 8887776554 5999999887655444443445577899999998877653 3 6888898877643 3444556677
Q ss_pred EEEEcCCCCEEEEEe-CC---eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCe
Q 003279 726 SVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 798 (834)
Q Consensus 726 sl~~spdg~~Lasgs-Dg---~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg---~I~Iwdl~~~~ 798 (834)
.+.|+|+|++|+.+. ++ .|.+||+.++.. ..+.. ........|+|++.+|++.+.++ .+++++.....
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~----~~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~ 400 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE----RVLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRF 400 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCe----EEccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCce
Confidence 889999999998887 44 789999887521 12221 12234568999999998887765 56777766555
Q ss_pred EEEeccCCCCeEEEEE
Q 003279 799 TLTLSAHDKLVSSLAA 814 (834)
Q Consensus 799 ~~~l~~h~~~V~~laf 814 (834)
...+..+.+.+..++|
T Consensus 401 ~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 401 RARLPLGNGDVREPAW 416 (417)
T ss_pred eeECCCCCCCcCCCCC
Confidence 5455444555655555
No 225
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=7.4e-13 Score=151.94 Aligned_cols=221 Identities=19% Similarity=0.188 Sum_probs=156.5
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEE-EEeCCC--eEE
Q 003279 546 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVR 619 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~Lasgs~D---g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~La-tgs~Dg--~I~ 619 (834)
+.+..|...|.+.+|+|||+.|+.++.+ ..|++||+.+++... +..+.+...+++|+|||+.|+ +.+.++ .|+
T Consensus 197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy 275 (433)
T PRK04922 197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIY 275 (433)
T ss_pred eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence 3455677789999999999999988743 469999998876543 334455566899999998775 445555 599
Q ss_pred EEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCc--EEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEE
Q 003279 620 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 620 IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~--I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~ 697 (834)
+||+.++. +..+..+......++|+||++.++++...+|. |+++|+.+++..............+|+|++++|+..
T Consensus 276 ~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 276 VMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMV 353 (433)
T ss_pred EEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence 99998765 44555565566788999999988877666655 777788777654433333345578999999999887
Q ss_pred EcCC---eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C-C--eEEEEEcCCCCCceeEEEeecCCCceEE
Q 003279 698 AIEN---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-E--LVRVWSIGSGSKGECIHELSCTGNKFHS 770 (834)
Q Consensus 698 s~dg---~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-D-g--~I~IwDl~s~~~~~~i~~~~~~~~~I~s 770 (834)
+.++ .|.+||+.++... .+. +......+.|+|||++|+..+ + + .|+++++... ....+..+.+.+..
T Consensus 354 ~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~----~~~~l~~~~g~~~~ 427 (433)
T PRK04922 354 HGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR----VRQRLVSADGEVRE 427 (433)
T ss_pred ECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEEcccCCCCCCC
Confidence 6543 6999999887655 333 333455789999999888766 2 2 6888887543 33344444556666
Q ss_pred EEEeC
Q 003279 771 CVFHP 775 (834)
Q Consensus 771 vafsp 775 (834)
.+|+|
T Consensus 428 p~wsp 432 (433)
T PRK04922 428 PAWSP 432 (433)
T ss_pred CccCC
Confidence 77776
No 226
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.53 E-value=9.7e-13 Score=136.80 Aligned_cols=277 Identities=17% Similarity=0.313 Sum_probs=189.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-----EEEEeccC------------CCCeEEEEECCCC--CEEEEE
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----VKSTLEEH------------TQWITDVRFSPSL--SRLATS 612 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~-----~~~~l~~h------------~~~I~~l~fspdg--~~Latg 612 (834)
.+-|.+|.|..+|.+||+|..+|.|.+|.-+... ....+..| ...|..+.|.+++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4558999999999999999999999999543211 22333333 3458899999864 467778
Q ss_pred eCCCeEEEEecCCCCcee----------------------------------ee-eccCCCCeEEEEEccCCCcEEEEEe
Q 003279 613 SADRTVRVWDTENPDYSL----------------------------------RT-FTGHSTTVMSLDFHPSKEDLLCSCD 657 (834)
Q Consensus 613 s~Dg~I~IWDl~s~~~~i----------------------------------~~-~~~h~~~V~sl~fspdg~~llasgs 657 (834)
+.|++|++|.+....... +. -..|...|.+|.++.|...++ ++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SA- 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SA- 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ec-
Confidence 899999999886432110 11 124788899999999988665 44
Q ss_pred CCCcEEEEECCCC-ceeeEeec--------CCCeeEEEEecC-CCEEEEEEcCCeEEEEECCCCeE------EEE-----
Q 003279 658 NNSEIRYWSINNG-SCAGVFKC--------QSGATQMRFQPR-LGRILAAAIENYISILDVETQVC------RLK----- 716 (834)
Q Consensus 658 ~Dg~I~lwDl~s~-~~i~~~~~--------~~~i~~l~~sp~-g~~ll~~s~dg~I~iwDl~t~~~------~~~----- 716 (834)
+|-.|.+|+++-- .+...... ..-|++..|+|. .+.++..++.|.|++.|++.... +..
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 4889999998743 22222222 123788999995 45677778889999999984311 111
Q ss_pred -----EeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCC------------C---ceEEEEEeCC
Q 003279 717 -----LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG------------N---KFHSCVFHPT 776 (834)
Q Consensus 717 -----l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~------------~---~I~svafspd 776 (834)
|.+--..|..+.|+++|+|+++-+--+|++||+.... +++.++..|. . .-..|+|+.+
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~--~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA--KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC--CcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 1112236788999999999998887899999996543 3444444332 1 1256899999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEE--Eec--------------------cC-------------CCCeEEEEEeCCCCEE
Q 003279 777 FPSLLVIGCYETLELWNMTENKTL--TLS--------------------AH-------------DKLVSSLAASTVNGMV 821 (834)
Q Consensus 777 g~~L~sgs~dg~I~Iwdl~~~~~~--~l~--------------------~h-------------~~~V~~lafspdg~~L 821 (834)
+.++++|+..+.+++|++..|... ++. +. ...|...+|+|....|
T Consensus 341 ~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~i 420 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSI 420 (433)
T ss_pred cceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCcccee
Confidence 999999999999999996544322 000 00 1124456899999999
Q ss_pred EEEecCCcEEEe
Q 003279 822 ASASHDKCVKIW 833 (834)
Q Consensus 822 aSgs~DG~I~IW 833 (834)
|.+.... ++||
T Consensus 421 a~aatnn-lyif 431 (433)
T KOG1354|consen 421 AVAATNN-LYIF 431 (433)
T ss_pred eeeecCc-eEEe
Confidence 8887654 5544
No 227
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=3.3e-12 Score=146.77 Aligned_cols=221 Identities=13% Similarity=0.121 Sum_probs=157.9
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEE-EEeCCCe--EE
Q 003279 546 QLIPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRT--VR 619 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~Lasgs~---Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~La-tgs~Dg~--I~ 619 (834)
+.+..|...|.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+.+.+|+|||+.|+ +.+.++. |+
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence 445578888999999999999988764 468999999887654 4555667788999999998775 5555554 77
Q ss_pred EEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC--cEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEE
Q 003279 620 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 620 IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg--~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~ 697 (834)
+||+.++. ...+..+........|+||++.++++...+| .|++||+..+...........+....|+|+++.|+..
T Consensus 274 ~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 274 TMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFT 351 (435)
T ss_pred EEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEE
Confidence 77887654 4556666666778999999998877665544 6888898877655544444556778999999999887
Q ss_pred EcC---CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--C-----CeEEEEEcCCCCCceeEEEeecCCCc
Q 003279 698 AIE---NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-----ELVRVWSIGSGSKGECIHELSCTGNK 767 (834)
Q Consensus 698 s~d---g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--D-----g~I~IwDl~s~~~~~~i~~~~~~~~~ 767 (834)
..+ ..|.+||+..+.. ..+. ....+..+.|+|||+.|+... . ..++++|+..+. ...+. ....
T Consensus 352 ~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~----~~~l~-~~~~ 424 (435)
T PRK05137 352 KQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN----EREVP-TPGD 424 (435)
T ss_pred EcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc----eEEcc-CCCC
Confidence 754 3688899866543 3333 233567889999999887755 2 257888886642 22333 2334
Q ss_pred eEEEEEeCC
Q 003279 768 FHSCVFHPT 776 (834)
Q Consensus 768 I~svafspd 776 (834)
+...+|+|-
T Consensus 425 ~~~p~Wsp~ 433 (435)
T PRK05137 425 ASDPAWSPL 433 (435)
T ss_pred ccCcccCCC
Confidence 566677763
No 228
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.53 E-value=3.4e-12 Score=131.97 Aligned_cols=231 Identities=13% Similarity=0.174 Sum_probs=169.8
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEecCCCCcee-eeeccCCCCeEEEEEccCCCcEEEEEeCC------CcEEEEECC
Q 003279 596 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSIN 668 (834)
Q Consensus 596 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i-~~~~~h~~~V~sl~fspdg~~llasgs~D------g~I~lwDl~ 668 (834)
....++|+.|...+++|..+| .+||+++.-+... +.+....-.+..+-|- .+.+..+|+.+ ..|.|||=.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence 345699999999999987776 8999987532211 1111111222222232 24455555544 479999988
Q ss_pred CCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC-CeEEEEEeC--CCCCEEEEEEcCCCCEEEEEe--CCe
Q 003279 669 NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQG--HKNQVHSVCWNTSGEYLASVS--DEL 743 (834)
Q Consensus 669 s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t-~~~~~~l~~--h~~~I~sl~~spdg~~Lasgs--Dg~ 743 (834)
..+++.++....+|..+.+.++ .++.-.++.|+||...+ .+.++.+.. ....+.+++-..+..+||.-+ -|.
T Consensus 84 k~~~i~el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 84 KERCIIELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred cCcEEEEEEeccceeeEEEcCC---eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 8899999999999999999876 45555679999999884 455555543 233455555444556777655 789
Q ss_pred EEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCeEE-Eec--cCCCCeEEEEEeCCCC
Q 003279 744 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLS--AHDKLVSSLAASTVNG 819 (834)
Q Consensus 744 I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg-~I~Iwdl~~~~~~-~l~--~h~~~V~~lafspdg~ 819 (834)
|.|-|+...... .-..+..|...|.+++++-+|..||+++..| -|+|||..+|+.+ .+. .....|.+++|||++.
T Consensus 161 vQi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 161 VQIVDLASTKPN-APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS 239 (346)
T ss_pred EEEEEhhhcCcC-CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence 999999876431 3467788999999999999999999999999 5899999999887 333 3346799999999999
Q ss_pred EEEEEecCCcEEEe
Q 003279 820 MVASASHDKCVKIW 833 (834)
Q Consensus 820 ~LaSgs~DG~I~IW 833 (834)
+||++|+.|+|+||
T Consensus 240 ~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 240 WLAVSSDKGTLHIF 253 (346)
T ss_pred EEEEEcCCCeEEEE
Confidence 99999999999997
No 229
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=5e-12 Score=145.09 Aligned_cols=234 Identities=15% Similarity=0.051 Sum_probs=164.6
Q ss_pred cEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCc
Q 003279 575 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 651 (834)
Q Consensus 575 ~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~ 651 (834)
.|.++|.+.+.. ..+..+...+...+|+|||+.|+..+.+ ..|++||+.++.. ..+....+.+...+|+|+|+.
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCCE
Confidence 477788775543 4555677789999999999999877654 3699999987653 333334445667899999998
Q ss_pred EEEEEeCCC--cEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcC---CeEEEEECCCCeEEEEEeCCCCCEEE
Q 003279 652 LLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVHS 726 (834)
Q Consensus 652 llasgs~Dg--~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d---g~I~iwDl~t~~~~~~l~~h~~~I~s 726 (834)
++++.+.++ .|++||+.++................|+|+++.|+..+.. ..|+++|+.+++...... .......
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~ 335 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR 335 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence 887776665 6888999988765544444456678999999988877653 368888988776433222 2233446
Q ss_pred EEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeE
Q 003279 727 VCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKT 799 (834)
Q Consensus 727 l~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg---~I~Iwdl~~~~~ 799 (834)
..|+|||++|+... ++ .|.+||+.++.. ..+ .. ........|+|+|+.|+..+.++ .|+++++..+..
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~l---t~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RIL---TD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEc---cC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 78999999998876 33 588999987632 222 21 11223568999999998877653 688888877666
Q ss_pred EEeccCCCCeEEEEEeCC
Q 003279 800 LTLSAHDKLVSSLAASTV 817 (834)
Q Consensus 800 ~~l~~h~~~V~~lafspd 817 (834)
..+..+.+.+...+|+|-
T Consensus 411 ~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 411 LPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EECcCCCCCcCCCccCCC
Confidence 566566677888888863
No 230
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.52 E-value=1.6e-11 Score=137.22 Aligned_cols=263 Identities=10% Similarity=0.055 Sum_probs=172.5
Q ss_pred CEE-EEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEE
Q 003279 565 KLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 643 (834)
Q Consensus 565 ~~L-asgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl 643 (834)
+++ ++-..++.|.|.|..+.+.+.++......-..+.|+||++++++++.||.|.++|+.+.+. +..+.. .....++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-v~~i~~-G~~~~~i 83 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV-VATIKV-GGNPRGI 83 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE-EEEEE--SSEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE-EEEEec-CCCcceE
Confidence 344 4455689999999999999999986655445688999999999999999999999998774 555543 3457889
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC--------CCeeEEEEecCCCEEEEEEcC-CeEEEEECCCCeEE
Q 003279 644 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--------SGATQMRFQPRLGRILAAAIE-NYISILDVETQVCR 714 (834)
Q Consensus 644 ~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~--------~~i~~l~~sp~g~~ll~~s~d-g~I~iwDl~t~~~~ 714 (834)
++++||+++++++..++.+.++|.++.+.+..+... ..+..+..++....+++.-.| +.|.+.|.......
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence 999999999988889999999999999999887642 356778888888877777665 89999998765322
Q ss_pred -EEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeec----CCCceEEEEEeCC----------C
Q 003279 715 -LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC----TGNKFHSCVFHPT----------F 777 (834)
Q Consensus 715 -~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~----~~~~I~svafspd----------g 777 (834)
..............|+|+++|++++. ++.|-++|..++ +.+..+.. |..+...+ .||. +
T Consensus 164 ~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~---k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~ 239 (369)
T PF02239_consen 164 KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG---KLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLG 239 (369)
T ss_dssp EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT---EEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSS
T ss_pred ceeeecccccccccccCcccceeeecccccceeEEEeeccc---eEEEEeeccccccccccccc-cCCCcceEEeecccc
Confidence 22333456788999999999988766 779999999887 33333322 22222221 2222 2
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEE-eccCCCCeEEEEEeCCCCEEEEE----ecCCcEEEeC
Q 003279 778 PSLLVIGCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASA----SHDKCVKIWK 834 (834)
Q Consensus 778 ~~L~sgs~dg~I~Iwdl~~~~~~~-l~~h~~~V~~lafspdg~~LaSg----s~DG~I~IWd 834 (834)
...++.-..+.+.+||....+.+. +...... ..+..+|++++|.+. ...+.|.|+|
T Consensus 240 ~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD 300 (369)
T PF02239_consen 240 YFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVID 300 (369)
T ss_dssp SSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEE
T ss_pred ceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEE
Confidence 333233333456678888888884 4444444 778889999999988 3447787775
No 231
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=1.3e-12 Score=138.10 Aligned_cols=237 Identities=16% Similarity=0.171 Sum_probs=183.9
Q ss_pred CCCCeEEEEECCCC--CEEEEEeCCCeEEEEecCCCCcee-----eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEE
Q 003279 593 HTQWITDVRFSPSL--SRLATSSADRTVRVWDTENPDYSL-----RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 665 (834)
Q Consensus 593 h~~~I~~l~fspdg--~~Latgs~Dg~I~IWDl~s~~~~i-----~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lw 665 (834)
....|+.++|.-++ ..|..++.|..+..+.+......- ........+|..+.... ..|++|..+|.+.+|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d---g~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD---GTLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC---CEEEEEecCCcEEEE
Confidence 34557777776543 345555466666666666543211 13344566777777652 256688889999999
Q ss_pred ECCCCc----eeeEeecCCCeeEEEEecCCCEEEE-EEcC--CeEEEEECCCCeEEEEEeCC---------CCCEEEEEE
Q 003279 666 SINNGS----CAGVFKCQSGATQMRFQPRLGRILA-AAIE--NYISILDVETQVCRLKLQGH---------KNQVHSVCW 729 (834)
Q Consensus 666 Dl~s~~----~i~~~~~~~~i~~l~~sp~g~~ll~-~s~d--g~I~iwDl~t~~~~~~l~~h---------~~~I~sl~~ 729 (834)
..+.+. ....+..+.++..+.-++...+|++ |+.. +.+.|||++..+.+..-+.- .-+++++.|
T Consensus 131 ~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred eccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 998543 4445556678888888887777666 7777 78999999988766654432 225678899
Q ss_pred cCC--CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE--Eecc
Q 003279 730 NTS--GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSA 804 (834)
Q Consensus 730 spd--g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~--~l~~ 804 (834)
-+. ...|++++ -+.|++||.+.+. +++..+.....++.++...|++++|+++...+.+..||++.++.. .+.+
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qR--RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQR--RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccC--cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 887 78888888 8999999999775 677888888999999999999999999999999999999999988 4778
Q ss_pred CCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 805 HDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 805 h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
..+.|++|..+|.+.+|++|+-|..|+|+|
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 899999999999999999999999999997
No 232
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.50 E-value=3.4e-14 Score=152.48 Aligned_cols=229 Identities=15% Similarity=0.178 Sum_probs=189.8
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeE
Q 003279 596 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 675 (834)
Q Consensus 596 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~ 675 (834)
.-..+.|+.+|++|+.|+..|.|..+|..+... .....-...|.++.|..+.. +||++ ....++|||-. |..+..
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L--~~Ei~v~Etv~Dv~~LHneq-~~AVA-QK~y~yvYD~~-GtElHC 205 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL--HFEINVMETVRDVTFLHNEQ-FFAVA-QKKYVYVYDNN-GTELHC 205 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeeccccee--eeeeehhhhhhhhhhhcchH-HHHhh-hhceEEEecCC-CcEEee
Confidence 456889999999999999999999999998664 22223456788999987754 55444 46789999966 777788
Q ss_pred eecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC
Q 003279 676 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK 754 (834)
Q Consensus 676 ~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~ 754 (834)
++....+..+.|.|..-.|++++..|.++.-|+.+|+.+..+....+.+..++-+|-+..+-+|. .|+|.+|.-.+.
T Consensus 206 lk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk-- 283 (545)
T KOG1272|consen 206 LKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK-- 283 (545)
T ss_pred hhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc--
Confidence 88889999999999977788888889999999999999999888888999999999999999988 999999998877
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 755 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 755 ~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+++..+-+|.++|.++++.++|.++++++.|..|+|||++.-..+.......+...++||..| +++++....|.||.
T Consensus 284 -ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 284 -EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred -chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecCCeeeeeh
Confidence 677788899999999999999999999999999999999987755222225667788888655 44455666788984
No 233
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=8.6e-12 Score=143.47 Aligned_cols=233 Identities=15% Similarity=0.099 Sum_probs=160.2
Q ss_pred cEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC-C--eEEEEecCCCCceeeeeccCCCCeEEEEEccCCCc
Q 003279 575 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 651 (834)
Q Consensus 575 ~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D-g--~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~ 651 (834)
.|.++|.+.... ..+..+...+.+..|+|||+.|+..+.+ + .|++||+.++.. ..+....+.....+|+||++.
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCCE
Confidence 577778665443 4555677789999999999998877543 2 688999987653 222222334457899999998
Q ss_pred EEEEEeCCCc--EEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcC---CeEEEEECCCCeEEEEEeCCCCCEEE
Q 003279 652 LLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVHS 726 (834)
Q Consensus 652 llasgs~Dg~--I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d---g~I~iwDl~t~~~~~~l~~h~~~I~s 726 (834)
++++.+.++. |++||+.+++...............|+|+++.|++.+.. ..|+++|+.+++.... .........
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~ 354 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLG 354 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcC
Confidence 8888777775 888899887765544444456778999999998877653 3578888887764332 222233446
Q ss_pred EEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeE
Q 003279 727 VCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKT 799 (834)
Q Consensus 727 l~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg---~I~Iwdl~~~~~ 799 (834)
.+|+|||++|+..+ ++ .|.++|+.++.. ..+... .......|+|+|+.|+..+.++ .|++++......
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~----~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~ 429 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAM----QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFK 429 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCe----EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 79999999988876 34 566678777632 112211 1223458999999988776644 588888866655
Q ss_pred EEeccCCCCeEEEEEeC
Q 003279 800 LTLSAHDKLVSSLAAST 816 (834)
Q Consensus 800 ~~l~~h~~~V~~lafsp 816 (834)
..+..+.+.+...+|+|
T Consensus 430 ~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 430 ARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EECcCCCCCcCCCccCC
Confidence 56666677788888987
No 234
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.48 E-value=4.2e-12 Score=149.70 Aligned_cols=251 Identities=17% Similarity=0.234 Sum_probs=173.5
Q ss_pred EeCCCCeEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEecCCCCc------eeeeeccCCCCeEEEEEccCCCc
Q 003279 579 WCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKED 651 (834)
Q Consensus 579 Wd~~t~~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~s~~~------~i~~~~~h~~~V~sl~fspdg~~ 651 (834)
|+. .|..+..+..|...|..++.++.. .+|+|||.||+|++||...-.. ...++......+.++.+.+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 553 468888899999999999998764 9999999999999999874221 12344445788999999988775
Q ss_pred EEEEEeCCCcEEEEECCCCc-------eeeEeec--CCCe-eEEEEec-CCC-EEEEEEcCCeEEEEECCCCeEEEEEeC
Q 003279 652 LLCSCDNNSEIRYWSINNGS-------CAGVFKC--QSGA-TQMRFQP-RLG-RILAAAIENYISILDVETQVCRLKLQG 719 (834)
Q Consensus 652 llasgs~Dg~I~lwDl~s~~-------~i~~~~~--~~~i-~~l~~sp-~g~-~ll~~s~dg~I~iwDl~t~~~~~~l~~ 719 (834)
+|.++.||.|.+.+++-.. +.+.... .+.+ ..-+|.. ... .++++...+.|..||++.......++.
T Consensus 1113 -~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1113 -FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred -EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 5566899999999987521 1111111 2222 2233332 223 577777789999999998765554442
Q ss_pred --CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe-ecCCCceEEEEEeCCCC---EEEEEE--cCCeEE
Q 003279 720 --HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFP---SLLVIG--CYETLE 790 (834)
Q Consensus 720 --h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~-~~~~~~I~svafspdg~---~L~sgs--~dg~I~ 790 (834)
..+.|++++.+|.+.+++.|+ .|.+.+||++-+ ..+... ..+..++..+..+|..+ ..++++ ..+.|.
T Consensus 1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~---~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR---VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred CccccceeEEEecCCceEEEEecCCceEEEEEeecC---ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 457899999999999999999 899999999987 444433 23446777777776544 444444 456899
Q ss_pred EEECCCCeEEE-eccC-------------------CCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 791 LWNMTENKTLT-LSAH-------------------DKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 791 Iwdl~~~~~~~-l~~h-------------------~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+|++.+|.... +... .-.....++..-+.++.+|+.|..|+.||
T Consensus 1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 99998875431 1111 11122233444456899999999999998
No 235
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.48 E-value=2.9e-12 Score=139.96 Aligned_cols=170 Identities=18% Similarity=0.263 Sum_probs=130.8
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEEEEe----ccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCCC--------
Q 003279 561 SPDGKLLATGGHDKKAVLWCTESFTVKSTL----EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD-------- 627 (834)
Q Consensus 561 Spdg~~Lasgs~Dg~I~IWd~~t~~~~~~l----~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~s~~-------- 627 (834)
.+++--|+.|-..|.|.+.|....+..+.+ .-....|+|+.|-|. ...++++-.+|.+++||.....
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 345556778888899999886552222111 123468999999995 4566677789999999764110
Q ss_pred -------------------ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEE
Q 003279 628 -------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRF 687 (834)
Q Consensus 628 -------------------~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~ 687 (834)
.++..+.-..+.|..++|+|||. +||+.+.||.++|||..+.+.+..++. -++..|++|
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcW 340 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCW 340 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEE
Confidence 01111222345788999999877 667889999999999998877665553 578999999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcC
Q 003279 688 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 731 (834)
Q Consensus 688 sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~sp 731 (834)
+|||++|++|++|.-|.||.+...+.+..-.+|+.+|..|+|+|
T Consensus 341 SPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 341 SPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 99999999999999999999999999999999999999999997
No 236
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=7e-12 Score=131.28 Aligned_cols=229 Identities=16% Similarity=0.187 Sum_probs=162.4
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC----
Q 003279 595 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---- 670 (834)
Q Consensus 595 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~---- 670 (834)
-.+..++|++.-..++++..|-.|++||-.. ..+..........|+|++|-|.+...|+.|. .+.|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCcccccc
Confidence 3577899999777789999999999999886 3222222334578999999998887787777 456999976421
Q ss_pred c--------eeeEee--cCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 003279 671 S--------CAGVFK--CQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 739 (834)
Q Consensus 671 ~--------~i~~~~--~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasg 739 (834)
. +...+. .+..|+++.|.+||..+++++. +..|.|||..++..+.......+.++-+.|||||.+|+++
T Consensus 177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA 256 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA 256 (445)
T ss_pred cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence 1 111222 3567999999999999998887 5789999999987665554456778899999999999999
Q ss_pred e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCe----------EE-------
Q 003279 740 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENK----------TL------- 800 (834)
Q Consensus 740 s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg-~I~Iwdl~~~~----------~~------- 800 (834)
. |+..++|..... ..........+.|...+|+|+|++|+.+.... .|+-....... .+
T Consensus 257 t~davfrlw~e~q~---wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 257 TCDAVFRLWQENQS---WTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred cccceeeeehhccc---ceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 8 999999965443 12222333455899999999999877665543 33322221110 11
Q ss_pred --Eecc----CCCCeEEEEEeCCCCEEEEEecCC
Q 003279 801 --TLSA----HDKLVSSLAASTVNGMVASASHDK 828 (834)
Q Consensus 801 --~l~~----h~~~V~~lafspdg~~LaSgs~DG 828 (834)
+... ..+++.+++|.|.|.+||+.-..+
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 0111 146788999999999999875443
No 237
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.44 E-value=5.3e-13 Score=137.86 Aligned_cols=221 Identities=17% Similarity=0.217 Sum_probs=160.7
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec
Q 003279 599 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 678 (834)
Q Consensus 599 ~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~ 678 (834)
-++|+|+|+++|+++.- .+.|-|.++-.. ..+...-..|.-|.|..+..++++....|+.|.+|++...+-...+..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~--~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQL--HQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhH--HHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc
Confidence 46899999999999766 777888776442 222223467888999999999999999999999999998887777764
Q ss_pred -CCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC
Q 003279 679 -QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK 754 (834)
Q Consensus 679 -~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~ 754 (834)
..++..++|+|+|+.|+..++ +-.|.+|.+.+.+.... .-.+..+..++|+|||++.+.++ |. .-.+.+...+.
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDC-kdyv~i~~c~~ 167 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDC-KDYVQISSCKA 167 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccH-HHHHHHHhhHH
Confidence 567999999999988776665 78999999998766543 22345678999999999999988 43 22222222222
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 755 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 755 ~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
...+..+....-..+.+.|+|||..|++ ||.--.-.+....-.-.+..++|+|.+++|+.|+.|+.++|-
T Consensus 168 W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvl 237 (447)
T KOG4497|consen 168 WILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVL 237 (447)
T ss_pred HHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhh
Confidence 2445555555667788999999996654 442111111122223468889999999999999999998874
No 238
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.44 E-value=5.8e-12 Score=131.25 Aligned_cols=252 Identities=17% Similarity=0.273 Sum_probs=192.7
Q ss_pred eeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEEEe-ccCCCCeEEEEECCCCCEEEEEeCCCe
Q 003279 540 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC-TESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRT 617 (834)
Q Consensus 540 ~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd-~~t~~~~~~l-~~h~~~I~~l~fspdg~~Latgs~Dg~ 617 (834)
+....+..++||.+.|+....-|...-+++.+.|.+++||- .+.++.-..+ .....+++++.+.++...|++|-..|+
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 33445678899999999999999888899999999999994 3444444333 234567899999999999999999999
Q ss_pred EEEEecCCC---CceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEE
Q 003279 618 VRVWDTENP---DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 694 (834)
Q Consensus 618 I~IWDl~s~---~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~l 694 (834)
+.-+.+... -...+.+..|...|..+.|+-..+ .+++++.|..+.---.+.+..+..+......+++.+.-. +.
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~ 168 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YA 168 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EE
Confidence 998877532 123567778999999999987645 566888887766444555555544443333333333322 55
Q ss_pred EEEEcCCeEEEEECC--CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003279 695 LAAAIENYISILDVE--TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 771 (834)
Q Consensus 695 l~~s~dg~I~iwDl~--t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 771 (834)
++|...|.|.+..+. .-..+.++.+|.+.+++++|.+....|++|. |..|.+||+.-.. ....++.+|...|..+
T Consensus 169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~--g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK--GTAYELQGHNDKVQAL 246 (404)
T ss_pred EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc--ceeeeeccchhhhhhh
Confidence 666667777665544 4577889999999999999999999999998 8999999997653 4666778888999999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 772 VFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 772 afspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
...+.-..+++++.||.|.+||++.
T Consensus 247 ~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 247 SYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhheeeeeccCCCeEEEEeccc
Confidence 8888888999999999999999853
No 239
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.44 E-value=1.7e-12 Score=130.80 Aligned_cols=264 Identities=16% Similarity=0.214 Sum_probs=180.8
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~-gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
..+.+|..-+.|.+|....... ...++ .|...|+.+...|+ ..|.+-+.|..+.+|++.
T Consensus 26 ~rL~sg~~~G~V~~w~lqt~r~-------------------~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia 85 (323)
T KOG0322|consen 26 ERLMSGLSVGIVKMWVLQTERD-------------------LPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIA 85 (323)
T ss_pred hhhhcccccceEEEEEeecCcc-------------------chhhhhhccceeeceeecCC-cchhhcCCCceEEEEEcc
Confidence 3477888889999996544321 23344 56778999998887 467888899999999998
Q ss_pred CCeEEEEeccCCCCeEEEEECCC-----CC----EEEEEeCCC-eEEEEecCCCCceeee----eccCCCCeEEEEEccC
Q 003279 583 SFTVKSTLEEHTQWITDVRFSPS-----LS----RLATSSADR-TVRVWDTENPDYSLRT----FTGHSTTVMSLDFHPS 648 (834)
Q Consensus 583 t~~~~~~l~~h~~~I~~l~fspd-----g~----~Latgs~Dg-~I~IWDl~s~~~~i~~----~~~h~~~V~sl~fspd 648 (834)
....+.. |.-.++++.|.+. ++ .++.-++.. .+.+-|..... .+.. -.+..+.++|..+..+
T Consensus 86 ~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t-qv~i~dd~~~~Klgsvmc~~~~~~ 161 (323)
T KOG0322|consen 86 YSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT-QVQIADDSERSKLGSVMCQDKDHA 161 (323)
T ss_pred CcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccc-eeEccCchhccccCceeeeecccc
Confidence 7555432 3344555555432 11 122111111 01222221111 0111 1223467888775432
Q ss_pred --CCcEEEEEeCCCcEEEEECCCCceeeEe-----------ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC--e-
Q 003279 649 --KEDLLCSCDNNSEIRYWSINNGSCAGVF-----------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQ--V- 712 (834)
Q Consensus 649 --g~~llasgs~Dg~I~lwDl~s~~~i~~~-----------~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~--~- 712 (834)
...++++|.++|.+.+||+.++..+..+ .+..++.++.|.+.-..=+.++.+..+..|.+... .
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl 241 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL 241 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc
Confidence 3446677888999999999987433322 24567889999876666677888888889887643 2
Q ss_pred -EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003279 713 -CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 790 (834)
Q Consensus 713 -~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~ 790 (834)
...++.-..-.|..+.+-||++++++++ |+.|+||..++. .++..+.-|...|.+++|+|+...+++++.|..|.
T Consensus 242 q~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl---~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rIS 318 (323)
T KOG0322|consen 242 QIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL---NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARIS 318 (323)
T ss_pred cccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC---CchhhhhhhhcceeEEEeCCCCchhhhccCCceEE
Confidence 1222222344688899999999999999 999999999998 77888888999999999999999999999999999
Q ss_pred EEEC
Q 003279 791 LWNM 794 (834)
Q Consensus 791 Iwdl 794 (834)
+|++
T Consensus 319 LWkL 322 (323)
T KOG0322|consen 319 LWKL 322 (323)
T ss_pred eeec
Confidence 9986
No 240
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=9e-11 Score=134.16 Aligned_cols=238 Identities=14% Similarity=0.114 Sum_probs=159.4
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCE--E-EEEeCCC--eEEEEecCCCCceeeeeccCCCCeEEEEEccC
Q 003279 574 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR--L-ATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 648 (834)
Q Consensus 574 g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~--L-atgs~Dg--~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspd 648 (834)
+.|.+.|.+.+... .+......+.+-+|+|||+. + ++...++ .|++.++.++.. ..+....+.....+|+||
T Consensus 165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~--~~lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG--KKILALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc--eEeecCCCCccceEECCC
Confidence 36777787655443 45455666788999999875 2 2444443 578888876543 333334455667899999
Q ss_pred CCcEEEEEeCCC----cEEEEECCCC---ceeeEeecC-CCeeEEEEecCCCEEEEEEc-CCe--EEEEECCC-CeEEEE
Q 003279 649 KEDLLCSCDNNS----EIRYWSINNG---SCAGVFKCQ-SGATQMRFQPRLGRILAAAI-ENY--ISILDVET-QVCRLK 716 (834)
Q Consensus 649 g~~llasgs~Dg----~I~lwDl~s~---~~i~~~~~~-~~i~~l~~sp~g~~ll~~s~-dg~--I~iwDl~t-~~~~~~ 716 (834)
|+.++++.+.+| .+.+|++..+ ......... ......+|+|||+.|+..+. +|. |+++++.. +.....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 998888775444 3444777653 333333222 23467899999998887764 554 55556542 233444
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEe--C--CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeE
Q 003279 717 LQGHKNQVHSVCWNTSGEYLASVS--D--ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETL 789 (834)
Q Consensus 717 l~~h~~~I~sl~~spdg~~Lasgs--D--g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d---g~I 789 (834)
+..+...+....|+|||+.|+... + ..|.+||+.++.. ..+......+....|+|||+.|+..+.+ ..|
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L 397 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----YQLTTSPENKESPSWAIDSLHLVYSAGNSNESEL 397 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----EEccCCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 554556678899999999988776 2 3799999988732 2222223456778999999988876543 379
Q ss_pred EEEECCCCeEEEeccCCCCeEEEEEeCCC
Q 003279 790 ELWNMTENKTLTLSAHDKLVSSLAASTVN 818 (834)
Q Consensus 790 ~Iwdl~~~~~~~l~~h~~~V~~lafspdg 818 (834)
+++|+.+++...+....+.+...+|+|-.
T Consensus 398 ~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 398 YLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEECCCCCEEEeecCCCcccCceecCCC
Confidence 99999998887776666778888998753
No 241
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=1.6e-12 Score=140.60 Aligned_cols=283 Identities=15% Similarity=0.182 Sum_probs=212.7
Q ss_pred CCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcC--CCCEEEEEeC
Q 003279 495 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGH 572 (834)
Q Consensus 495 ~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSp--dg~~Lasgs~ 572 (834)
....+......+++||.|..|-+|.+..... ......||...|.-..|-| +...|++++.
T Consensus 146 ntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~------------------~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~ 207 (559)
T KOG1334|consen 146 NTVHFNQRGDVLASGSDDLQVVVWDWVSGSP------------------KLSFESGHCNNVFQAKFIPFSGDRTIVTSSR 207 (559)
T ss_pred ceeeecccCceeeccCccceEEeehhhccCc------------------ccccccccccchhhhhccCCCCCcCceeccc
Confidence 3444455667899999999999996644311 1234458988898888988 4457999999
Q ss_pred CCcEEEEeCC-CCeE--EEEeccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEecCCCCce--eeeeccCCC---CeEEE
Q 003279 573 DKKAVLWCTE-SFTV--KSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYS--LRTFTGHST---TVMSL 643 (834)
Q Consensus 573 Dg~I~IWd~~-t~~~--~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~s~~~~--i~~~~~h~~---~V~sl 643 (834)
||.|++=.+. ++.+ ...+..|.++|..++.-|+. ..|.+++.|+.|.-+|+...... +.....+.. ...+|
T Consensus 208 dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~I 287 (559)
T KOG1334|consen 208 DGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTI 287 (559)
T ss_pred cCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeE
Confidence 9999988654 3333 34567899999999999964 46899999999999999864421 122222333 56789
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCCCce------eeEee-------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003279 644 DFHPSKEDLLCSCDNNSEIRYWSINNGSC------AGVFK-------CQSGATQMRFQPRLGRILAAAIENYISILDVET 710 (834)
Q Consensus 644 ~fspdg~~llasgs~Dg~I~lwDl~s~~~------i~~~~-------~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t 710 (834)
+..|...+.+++++.|-.+++||.+.-.. +..+. ....|++++|+.++..++++..|-.|++|.-.-
T Consensus 288 a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 288 AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM 367 (559)
T ss_pred ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccc
Confidence 99999898999999999999999875321 12221 234699999999999999999999999995432
Q ss_pred --C----------eEEE-EEeCCCC--CEEEEEE-cCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003279 711 --Q----------VCRL-KLQGHKN--QVHSVCW-NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 773 (834)
Q Consensus 711 --~----------~~~~-~l~~h~~--~I~sl~~-spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svaf 773 (834)
+ ..+. .+++|.+ .|.++-| -|...|+++|+ -|.|.||+-.++ +.+..+.+....|+|+.-
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~---eii~~MegDr~VVNCLEp 444 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG---EIIRFMEGDRHVVNCLEP 444 (559)
T ss_pred ccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh---HHHHHhhcccceEeccCC
Confidence 2 1222 3677765 4667755 57889999999 569999999887 666667777778999999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCe
Q 003279 774 HPTFPSLLVIGCYETLELWNMTENK 798 (834)
Q Consensus 774 spdg~~L~sgs~dg~I~Iwdl~~~~ 798 (834)
+|.-+.|++++-|..|+||-..+.+
T Consensus 445 HP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 445 HPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred CCCCchhhccCCccceeeecCCccc
Confidence 9999999999999999999874433
No 242
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.42 E-value=1.1e-10 Score=127.34 Aligned_cols=272 Identities=16% Similarity=0.223 Sum_probs=195.3
Q ss_pred CeEEEEEcCCCCEEEEEeCC---------------CcEEEEeCCCCeEEEEeccCCCC--eE-EEEECCCCCEEEEEeCC
Q 003279 554 KVESCHFSPDGKLLATGGHD---------------KKAVLWCTESFTVKSTLEEHTQW--IT-DVRFSPSLSRLATSSAD 615 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~D---------------g~I~IWd~~t~~~~~~l~~h~~~--I~-~l~fspdg~~Latgs~D 615 (834)
.|..+.|+|.++||.+-+.. ..+.|||+.++..+..+..-..+ .. -+.|+.+.+++|-. ..
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~ 151 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VG 151 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-cc
Confidence 49999999999999996553 35999999999999998876666 55 78899888877655 34
Q ss_pred CeEEEEecCCCCceeeeeccC-CCCeEEEEEccCCCc-EEEE-----EeCCCcEEEEECCCCceeeEeec-CCCeeEEEE
Q 003279 616 RTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKED-LLCS-----CDNNSEIRYWSINNGSCAGVFKC-QSGATQMRF 687 (834)
Q Consensus 616 g~I~IWDl~s~~~~i~~~~~h-~~~V~sl~fspdg~~-llas-----gs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~ 687 (834)
..++|+++ ++......+..- ...|....|+|.+++ .||. .+.++.+++|.+..++.+..... ...-..+.|
T Consensus 152 ~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW 230 (561)
T COG5354 152 SSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKW 230 (561)
T ss_pred CeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEE
Confidence 46999997 333222222111 356888889987432 2222 34578999999987776655443 344567889
Q ss_pred ecCCCEEEEEEc-----------CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCC
Q 003279 688 QPRLGRILAAAI-----------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGS 753 (834)
Q Consensus 688 sp~g~~ll~~s~-----------dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~ 753 (834)
.+.|+++++-.. +..++++++....+.... ...++|..++|.|.++.+++.+ +-.+.++|++..
T Consensus 231 ~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N- 308 (561)
T COG5354 231 QVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN- 308 (561)
T ss_pred ecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc-
Confidence 998888766432 346888998855444443 5688999999999988776655 779999999875
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEe-----
Q 003279 754 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS----- 825 (834)
Q Consensus 754 ~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg---~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs----- 825 (834)
... ......-+.+.|+|.++++++++.++ .|.+||..+...+.-.-......-+.|+||+.++.+..
T Consensus 309 ---l~~--~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~ 383 (561)
T COG5354 309 ---LRF--YFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKL 383 (561)
T ss_pred ---eEE--ecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCccc
Confidence 222 22344556789999999999988875 89999988876663222333455578999999888764
Q ss_pred -cCCcEEEeC
Q 003279 826 -HDKCVKIWK 834 (834)
Q Consensus 826 -~DG~I~IWd 834 (834)
.|..|+|||
T Consensus 384 ~~Dn~i~l~~ 393 (561)
T COG5354 384 RVDNSIKLWD 393 (561)
T ss_pred ccCcceEEEE
Confidence 478899996
No 243
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=5.8e-11 Score=136.28 Aligned_cols=222 Identities=17% Similarity=0.169 Sum_probs=152.4
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEE-EeCCC--eEE
Q 003279 546 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADR--TVR 619 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~Lasgs~D---g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Lat-gs~Dg--~I~ 619 (834)
+.+..|...+....|+|||+.|+..+.+ ..|++||+.+++... +....+.+...+|+|||+.|+. .+.++ .|+
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 3445667789999999999999887644 368999998876543 3334455667999999998874 44455 688
Q ss_pred EEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC--cEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEE
Q 003279 620 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 620 IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg--~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~ 697 (834)
+||+.++. ...+..+........|+|+++.++++...++ .|+++|+.+++...............|+|+++.++..
T Consensus 271 ~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 271 VMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMV 348 (430)
T ss_pred EEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEE
Confidence 88998755 3445556666777899999998887765554 5778888877754433222334567899999999888
Q ss_pred EcCC---eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEE
Q 003279 698 AIEN---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHS 770 (834)
Q Consensus 698 s~dg---~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~s 770 (834)
..++ .|.+||+.++.... +. +........|+|||+.|+..+ ++ .|+++++... ....+....+.+..
T Consensus 349 ~~~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~----~~~~l~~~~g~~~~ 422 (430)
T PRK00178 349 HRQDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR----VRLPLPTAQGEVRE 422 (430)
T ss_pred EccCCceEEEEEECCCCCEEE-cc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEECcCCCCCcCC
Confidence 7543 58899998876433 22 122233568999999988776 33 5777777543 22233344455666
Q ss_pred EEEeCC
Q 003279 771 CVFHPT 776 (834)
Q Consensus 771 vafspd 776 (834)
.+|+|-
T Consensus 423 p~ws~~ 428 (430)
T PRK00178 423 PSWSPY 428 (430)
T ss_pred CccCCC
Confidence 777763
No 244
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=2e-11 Score=134.28 Aligned_cols=237 Identities=15% Similarity=0.182 Sum_probs=171.9
Q ss_pred cCCCCeEEEEECCCCCEE-EEEeCCCeEEEEecCCCCceeeeeccCCCCeEEE-EEccCCCcEEEEEeCCCcEEEEECCC
Q 003279 592 EHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL-DFHPSKEDLLCSCDNNSEIRYWSINN 669 (834)
Q Consensus 592 ~h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl-~fspdg~~llasgs~Dg~I~lwDl~s 669 (834)
+|....+.|..+|||.|+ +||.+.-.|+|||+..-. +..-......|..+ .++.|-...+ .--.|.+|.+...-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS--LKFERhlDae~V~feiLsDD~SK~v-~L~~DR~IefHak~- 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS--LKFERHLDAEVVDFEILSDDYSKSV-FLQNDRTIEFHAKY- 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccce--eeeeecccccceeEEEeccchhhhe-EeecCceeeehhhc-
Confidence 577888999999999985 566678899999998643 33222223334333 3343333333 23346666654322
Q ss_pred CceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEE
Q 003279 670 GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 748 (834)
Q Consensus 670 ~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwD 748 (834)
-....+..+.....++++.-..-|++++....|+-++++.|..+..+....+.+++|..++...+|++|+ +|.|.+||
T Consensus 125 -G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 125 -GRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred -CeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 2223333445566777777667788999999999999999999988888889999999999999999999 99999999
Q ss_pred cCCCCCceeEEE---eecCC-----CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCC--CeEEEEEeCC-
Q 003279 749 IGSGSKGECIHE---LSCTG-----NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDK--LVSSLAASTV- 817 (834)
Q Consensus 749 l~s~~~~~~i~~---~~~~~-----~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~--~V~~lafspd- 817 (834)
.+.......+.. +..+. ..|+++.|+.+|-.+++|+.+|.|+|||++..+++....|.. +|..+.|.+.
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~ 283 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD 283 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccC
Confidence 988643222221 11222 348999999999999999999999999999999997777754 6888888765
Q ss_pred -CCEEEEEecCCcEEEeC
Q 003279 818 -NGMVASASHDKCVKIWK 834 (834)
Q Consensus 818 -g~~LaSgs~DG~I~IWd 834 (834)
...|++. +...++|||
T Consensus 284 ~q~~v~S~-Dk~~~kiWd 300 (703)
T KOG2321|consen 284 QQNKVVSM-DKRILKIWD 300 (703)
T ss_pred CCceEEec-chHHhhhcc
Confidence 3455554 456789997
No 245
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.40 E-value=8.5e-10 Score=121.05 Aligned_cols=256 Identities=11% Similarity=0.061 Sum_probs=170.6
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC----------CCeEEEEecCCCCceeeeeccC-------
Q 003279 574 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTGH------- 636 (834)
Q Consensus 574 g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~----------Dg~I~IWDl~s~~~~i~~~~~h------- 636 (834)
+.|.+.|..+++.+..+..-..+- .+ ++||++.|+++.. +..|.+||+.+.+. +..+...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-IADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-EeEEccCCCchhhc
Confidence 899999999999998887544443 34 9999998887765 78999999998765 3333321
Q ss_pred CCCeEEEEEccCCCcEEEEEeC-CCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC-CeE-
Q 003279 637 STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET-QVC- 713 (834)
Q Consensus 637 ~~~V~sl~fspdg~~llasgs~-Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t-~~~- 713 (834)
......++++|||+.++++--. +..|.++|+.+++.+..+.......-...+.+ . +.+.+.||......+.+ ++.
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~-~-~~~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAND-T-FFMHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCC-c-cEEEeecCceEEEEecCCCceE
Confidence 2234478999999977766534 89999999999999998887553333333222 2 22334555544433332 221
Q ss_pred EEE---EeCCCCCEE-EEEEcC-CCCEEEEEeCCeEEEEEcCCCCCc--eeEEEeec-------CCCceEEEEEeCCCCE
Q 003279 714 RLK---LQGHKNQVH-SVCWNT-SGEYLASVSDELVRVWSIGSGSKG--ECIHELSC-------TGNKFHSCVFHPTFPS 779 (834)
Q Consensus 714 ~~~---l~~h~~~I~-sl~~sp-dg~~LasgsDg~I~IwDl~s~~~~--~~i~~~~~-------~~~~I~svafspdg~~ 779 (834)
... +.....++. .-.|.+ +|+++++..+|.|++.|+...... ..+..+.. ....+.-++++++++.
T Consensus 182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ 261 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR 261 (352)
T ss_pred EeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE
Confidence 111 111001110 113455 899998888999999997554211 12222111 1233445999999999
Q ss_pred EEEEE----------cCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCC-EEEEEe-cCCcEEEeC
Q 003279 780 LLVIG----------CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK 834 (834)
Q Consensus 780 L~sgs----------~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~-~LaSgs-~DG~I~IWd 834 (834)
+++.. ..+.|.++|..+++.+....-...+..++++||++ +|++.+ .++.|.|.|
T Consensus 262 lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 262 IYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred EEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 98853 22489999999999996666677999999999999 877666 578788875
No 246
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=2.2e-09 Score=113.83 Aligned_cols=266 Identities=12% Similarity=0.098 Sum_probs=186.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEeCCC--CeEE--EEeccCCCCeEEEEECCCCCEEEEEeC-CCeEEEE
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTES--FTVK--STLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVW 621 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~D---g~I~IWd~~t--~~~~--~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IW 621 (834)
.+.+.++-++|+|++++|.++..+ |.|..|.++. |+.. ........+-+.+++++++++|+++.. .|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 455668899999999999988654 7787777664 4443 222222334488999999999999876 5789999
Q ss_pred ecCCCCcee--eeeccCCCC----------eEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeE----eecCCCeeEE
Q 003279 622 DTENPDYSL--RTFTGHSTT----------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKCQSGATQM 685 (834)
Q Consensus 622 Dl~s~~~~i--~~~~~h~~~----------V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~----~~~~~~i~~l 685 (834)
-+....... .....|.+. +.+..+.|++++++++.-.--.|.+|++..++.... ++...+...+
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 997643211 223335544 888999999886665443345799999998765432 3446778999
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECCCC-eEEEEEeC---------CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC
Q 003279 686 RFQPRLGRILAAAI-ENYISILDVETQ-VCRLKLQG---------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG 752 (834)
Q Consensus 686 ~~sp~g~~ll~~s~-dg~I~iwDl~t~-~~~~~l~~---------h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~ 752 (834)
.|+|++++.++.++ +++|.+|..+.. ..+..+.. ...+...|.+++||++|.++. .+.|.+|.+...
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 99999999888877 789999998873 22222221 234677899999999999988 558999988765
Q ss_pred CC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEC--CCCeEEEe--ccCCCCeEEEEEe
Q 003279 753 SK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM--TENKTLTL--SAHDKLVSSLAAS 815 (834)
Q Consensus 753 ~~-~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg-~I~Iwdl--~~~~~~~l--~~h~~~V~~lafs 815 (834)
.. ...+.....+......+.|++.+++|+++..++ .|.+|.+ .+|++..+ ........||.|.
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 32 344444555566678999999999999998876 6777755 45655422 2344556677664
No 247
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.39 E-value=8.5e-11 Score=134.15 Aligned_cols=205 Identities=15% Similarity=0.185 Sum_probs=148.4
Q ss_pred CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC--CcEEEEECCCCceeeEeecCCCeeEEEEecCCCE
Q 003279 616 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 693 (834)
Q Consensus 616 g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D--g~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ 693 (834)
..|.++|..... .+.+..+...+.+.+|+|+++.++++...+ ..|++||+.+++..........+.+++|+|+++.
T Consensus 170 ~~l~~~d~~g~~--~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGAN--PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCCC--CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 368888876433 455556777899999999999877665443 4799999998876655555566778999999998
Q ss_pred EEEEEc-C--CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCC
Q 003279 694 ILAAAI-E--NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGN 766 (834)
Q Consensus 694 ll~~s~-d--g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~ 766 (834)
|++... + ..|++||+.++... .+..+........|+|||+.|+.++ ++ .|++||+.++. ...+..+..
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~~~~ 322 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTFRGG 322 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCC
Confidence 876543 3 36999999887543 3334555556789999999888766 23 68888887652 223333455
Q ss_pred ceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCC
Q 003279 767 KFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK 828 (834)
Q Consensus 767 ~I~svafspdg~~L~sgs~dg---~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG 828 (834)
.+..+.|+|++++|+.++.++ .|++||+.++....+... .......|+||+++|+.++.++
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 677889999999999988876 899999988766544432 2345678999999888777654
No 248
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=6.5e-11 Score=136.27 Aligned_cols=221 Identities=18% Similarity=0.189 Sum_probs=148.9
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEE-EeCCCe--EEE
Q 003279 547 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRT--VRV 620 (834)
Q Consensus 547 ~l~gH~~~V~sl~fSpdg~~Lasgs~D---g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Lat-gs~Dg~--I~I 620 (834)
.+..+...+.+..|+|||+.|+..+.+ ..|++||+.+++... +....+.....+|+|||+.|+. .+.++. |++
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 344556778999999999999877543 258889998876543 3223344557899999998765 455664 777
Q ss_pred EecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC--cEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEE
Q 003279 621 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 698 (834)
Q Consensus 621 WDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg--~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s 698 (834)
||+.++. ...+..+...+...+|+||++.+++++..++ .|+++|+.+++..............+|+|++++|+..+
T Consensus 291 ~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 291 VDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred EECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEE
Confidence 7887654 4455556566778999999998887776555 47777888776544332223344578999999998876
Q ss_pred cC-C--eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003279 699 IE-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSC 771 (834)
Q Consensus 699 ~d-g--~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 771 (834)
.+ + .|.++|+.++.... +... .......|+|||+.|+... ++ .+++++... .....+....+.+...
T Consensus 369 ~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G----~~~~~l~~~~g~~~~p 442 (448)
T PRK04792 369 RTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG----RFKARLPAGQGEVKSP 442 (448)
T ss_pred ecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCC----CceEECcCCCCCcCCC
Confidence 64 3 56778988876533 2222 1223558999999887766 33 477777643 3344444445566777
Q ss_pred EEeCC
Q 003279 772 VFHPT 776 (834)
Q Consensus 772 afspd 776 (834)
+|+|-
T Consensus 443 ~Wsp~ 447 (448)
T PRK04792 443 AWSPF 447 (448)
T ss_pred ccCCC
Confidence 78763
No 249
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.38 E-value=3e-11 Score=122.99 Aligned_cols=146 Identities=17% Similarity=0.342 Sum_probs=107.8
Q ss_pred eeEEEEecCCCEEEEEEc----------CCeEEEEECCC-CeEEEEEeC-CCCCEEEEEEcCCCCEEEEEe---CCeEEE
Q 003279 682 ATQMRFQPRLGRILAAAI----------ENYISILDVET-QVCRLKLQG-HKNQVHSVCWNTSGEYLASVS---DELVRV 746 (834)
Q Consensus 682 i~~l~~sp~g~~ll~~s~----------dg~I~iwDl~t-~~~~~~l~~-h~~~I~sl~~spdg~~Lasgs---Dg~I~I 746 (834)
-..+.|++.|.+|++-.. -+...+|.++. ...+..+.- ..++|.+++|+|+|..+++.. +..|.+
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 356788888888776554 12344554432 223333322 345799999999999876653 669999
Q ss_pred EEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEE
Q 003279 747 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 823 (834)
Q Consensus 747 wDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d---g~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaS 823 (834)
||++. ..+..+. ...+..+.|+|+|++|++++.+ |.|.+||+.+.+.+....|.. ++.++|+|||++|++
T Consensus 88 yd~~~----~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVKG----KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCcc----cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEE
Confidence 99962 4555553 5677899999999999998754 579999999988886666654 789999999999999
Q ss_pred Eec------CCcEEEeC
Q 003279 824 ASH------DKCVKIWK 834 (834)
Q Consensus 824 gs~------DG~I~IWd 834 (834)
+.. |..++||+
T Consensus 161 a~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWS 177 (194)
T ss_pred EEeccceeccccEEEEE
Confidence 874 78889985
No 250
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=1.9e-12 Score=141.24 Aligned_cols=166 Identities=17% Similarity=0.271 Sum_probs=128.6
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccC-CCcEEEEEeCCCcEEE
Q 003279 586 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRY 664 (834)
Q Consensus 586 ~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspd-g~~llasgs~Dg~I~l 664 (834)
....+.+|.+.|+|+.|+.+|.+|++||.|-.+.|||.-..+.....-.+|...|.++.|-|. ++.++++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 345788999999999999999999999999999999998766656677899999999999984 4668889999999999
Q ss_pred EECCCCc----------eeeEee-cCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeE-EE---------EEeCCCC
Q 003279 665 WSINNGS----------CAGVFK-CQSGATQMRFQPRL-GRILAAAIENYISILDVETQVC-RL---------KLQGHKN 722 (834)
Q Consensus 665 wDl~s~~----------~i~~~~-~~~~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t~~~-~~---------~l~~h~~ 722 (834)
||+...+ ....+. +...|..++..|++ ..+.++++||+|+-||++.... .. .+...--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9998522 122222 23557778888888 6788999999999999987321 10 1111122
Q ss_pred CEEEEEEcCCC-CEEEEEe-CCeEEEEEcCC
Q 003279 723 QVHSVCWNTSG-EYLASVS-DELVRVWSIGS 751 (834)
Q Consensus 723 ~I~sl~~spdg-~~Lasgs-Dg~I~IwDl~s 751 (834)
...|+.++|.. .+|++|+ |-..++||.+.
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr 232 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRR 232 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence 46789999864 5677777 77999999653
No 251
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=1.3e-10 Score=132.96 Aligned_cols=215 Identities=13% Similarity=0.101 Sum_probs=143.0
Q ss_pred CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCc--EEEEEeCCC--cEEEEECCCCceeeEeecCCCeeEEEEecCC
Q 003279 616 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED--LLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRL 691 (834)
Q Consensus 616 g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~--llasgs~Dg--~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g 691 (834)
+.|.+.|.+... .+.+......+.+-+|+|||+. ++++...+| .|++.++.+++...............|+|||
T Consensus 165 ~~l~~~d~dG~~--~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQN--LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCC--ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCC
Confidence 357777776543 3445555666788899999976 333554443 6888899888766655555666778999999
Q ss_pred CEEEEEEc-CC----eEEEEECCCC---eEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCe--EEEEEcCCCCCceeEE
Q 003279 692 GRILAAAI-EN----YISILDVETQ---VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DEL--VRVWSIGSGSKGECIH 759 (834)
Q Consensus 692 ~~ll~~s~-dg----~I~iwDl~t~---~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~--I~IwDl~s~~~~~~i~ 759 (834)
+.|+.... +| .+.+|++..+ ........+.......+|+|||+.|+..+ ++. |+++++.... ....
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--~~~~ 320 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--QSPR 320 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--cceE
Confidence 99988764 22 3444777653 33333322334456789999999888766 554 5555554221 1223
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEec-C--CcEEEe
Q 003279 760 ELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-D--KCVKIW 833 (834)
Q Consensus 760 ~~~~~~~~I~svafspdg~~L~sgs~d---g~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~-D--G~I~IW 833 (834)
.+......+....|+|||+.|+..+.+ ..|++||+.+++...+......+....|+|||++|+..+. + ..|++|
T Consensus 321 ~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 321 LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 333344566788999999999887654 3799999999988766655556788999999998775433 2 345555
Q ss_pred C
Q 003279 834 K 834 (834)
Q Consensus 834 d 834 (834)
|
T Consensus 401 d 401 (428)
T PRK01029 401 S 401 (428)
T ss_pred E
Confidence 3
No 252
>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]
Probab=99.37 E-value=3.5e-13 Score=136.01 Aligned_cols=77 Identities=32% Similarity=0.750 Sum_probs=64.0
Q ss_pred CcchHHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCCCCcccCCCCCcchhhHHHHHHHHHhhccc----ccchhhhhhh
Q 003279 4 NNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNE----KHSESAASYI 79 (834)
Q Consensus 4 ~~~~~~~~L~~yiy~yl~k~~~~~~A~~~~~e~~~~~~~~~~~~~~~fL~eww~~Fwd~f~a~~~~----~~s~~~~~y~ 79 (834)
++-.|+++|..||||||++-+..++|+.|+.|..+..+ +.+-.+.+||.+|||||||+|+|...+ .||..+..+.
T Consensus 12 Sd~qArekLa~YvYEYLlhvgaqksaqtflseirwekn-itlge~p~FLhsWWcvFwDLYcAAPeRRd~c~HSsEAKaFh 90 (354)
T KOG4594|consen 12 SDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKN-ITLGEPPGFLHSWWCVFWDLYCAAPERRDTCEHSSEAKAFH 90 (354)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhh-hhccCCcchhhhhHHHHHHHhhcCccccCcccccHhhhhhh
Confidence 56789999999999999999999999999999987776 455667799999999999999996554 4555555554
Q ss_pred HH
Q 003279 80 ES 81 (834)
Q Consensus 80 ~~ 81 (834)
++
T Consensus 91 dy 92 (354)
T KOG4594|consen 91 DY 92 (354)
T ss_pred hh
Confidence 43
No 253
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.35 E-value=2.4e-09 Score=113.51 Aligned_cols=261 Identities=11% Similarity=0.127 Sum_probs=182.6
Q ss_pred CCcEEEEeCCCC--eEE-EEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEecCCCCceeeee---ccCCCCeEEE
Q 003279 573 DKKAVLWCTESF--TVK-STLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTF---TGHSTTVMSL 643 (834)
Q Consensus 573 Dg~I~IWd~~t~--~~~-~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~s~~~~i~~~---~~h~~~V~sl 643 (834)
+.-|++|++++. +.. ..+-.+.+.++-|+|+|+.++|+++-.+ |.|..|.++...-.+..+ .....+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 467999988732 221 1223566788999999999999888654 778888887532212222 1223344889
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCC-Cce---eeEeecCCC----------eeEEEEecCCCEEEEEEcC-CeEEEEEC
Q 003279 644 DFHPSKEDLLCSCDNNSEIRYWSINN-GSC---AGVFKCQSG----------ATQMRFQPRLGRILAAAIE-NYISILDV 708 (834)
Q Consensus 644 ~fspdg~~llasgs~Dg~I~lwDl~s-~~~---i~~~~~~~~----------i~~l~~sp~g~~ll~~s~d-g~I~iwDl 708 (834)
++++++..++++....|.|.++-+.. |.. +..+.+.+. +.+..+.|+++++++..-. ..|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999988887777789999999965 432 334444333 8889999999999988864 78999999
Q ss_pred CCCeEEEEEe---CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC-CCceeEEEeec------CCCceEEEEEeCC
Q 003279 709 ETQVCRLKLQ---GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSC------TGNKFHSCVFHPT 776 (834)
Q Consensus 709 ~t~~~~~~l~---~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~-~~~~~i~~~~~------~~~~I~svafspd 776 (834)
..+.....-. ......+.|.|+|++++..+.. +++|.+|..... ...+.+..+.. .......+.+++|
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 9775432211 2445678999999999988877 999999999874 22333433332 2345678899999
Q ss_pred CCEEEEEEcCC-eEEEEECCC--CeEE---EeccCCCCeEEEEEeCCCCEEEEEecCC-cEEEe
Q 003279 777 FPSLLVIGCYE-TLELWNMTE--NKTL---TLSAHDKLVSSLAASTVNGMVASASHDK-CVKIW 833 (834)
Q Consensus 777 g~~L~sgs~dg-~I~Iwdl~~--~~~~---~l~~h~~~V~~lafspdg~~LaSgs~DG-~I~IW 833 (834)
|++|+++.... .|.+|.+.. +++. ....+....+.+.|++++++|+++..|+ .|.+|
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 99988876533 788887653 4333 2234455589999999999999888653 46655
No 254
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.35 E-value=7.8e-11 Score=119.99 Aligned_cols=155 Identities=19% Similarity=0.288 Sum_probs=111.3
Q ss_pred EEEEEcCCCCEEEEEeC----------CCcEEEEeCC-CCeEEEEec-cCCCCeEEEEECCCCCEEEEE--eCCCeEEEE
Q 003279 556 ESCHFSPDGKLLATGGH----------DKKAVLWCTE-SFTVKSTLE-EHTQWITDVRFSPSLSRLATS--SADRTVRVW 621 (834)
Q Consensus 556 ~sl~fSpdg~~Lasgs~----------Dg~I~IWd~~-t~~~~~~l~-~h~~~I~~l~fspdg~~Latg--s~Dg~I~IW 621 (834)
..+.|+++|++|++-.. -+...||.++ ....+..+. ...++|.+++|+|+++.||+. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 35789999988775433 1334555542 223334443 244579999999999987655 356799999
Q ss_pred ecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEe--CCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc
Q 003279 622 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 699 (834)
Q Consensus 622 Dl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs--~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~ 699 (834)
|++. . .+..+ +...+..|.|+|+|+.+++++. ..|.|.+||+++.+.+..+.+ ..+..++|+|+|++|+++..
T Consensus 89 d~~~-~-~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVKG-K-KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCcc-c-EeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc-CcEEEEEEcCCCCEEEEEEe
Confidence 9973 2 24444 3567889999999986665542 347899999999888888776 45789999999999999875
Q ss_pred ------CCeEEEEECCCCeEEEE
Q 003279 700 ------ENYISILDVETQVCRLK 716 (834)
Q Consensus 700 ------dg~I~iwDl~t~~~~~~ 716 (834)
|+.++||+.. |+.+..
T Consensus 164 ~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred ccceeccccEEEEEec-CeEeEe
Confidence 6889999985 544443
No 255
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.30 E-value=6.5e-11 Score=138.63 Aligned_cols=266 Identities=16% Similarity=0.238 Sum_probs=185.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe------ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL------EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 626 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l------~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~ 626 (834)
+++++..+-. +||+.|. --.|.+||+.++..+..+ ..|.. .... .-.+.+++++..-+.+..=+...
T Consensus 8 ~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~--e~~~-~l~~~~~v~~~~~~~v~~~~~~~- 80 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRG--EGKV-KLLSGKIVTCAKSDEVYVKEASN- 80 (967)
T ss_pred ccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccc--cccc-eeccceEEEEEeecceeecchhh-
Confidence 4455555554 5666554 457999999887665443 33400 0000 00234566665544444333321
Q ss_pred CceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCee-----EEEEecCCCEEEEEEcCC
Q 003279 627 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-----QMRFQPRLGRILAAAIEN 701 (834)
Q Consensus 627 ~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~-----~l~~sp~g~~ll~~s~dg 701 (834)
..+....+.|....+..+.. .++....+..+.+||...+.....+.+...+. -+-++++.-++++|+.-+
T Consensus 81 ----~~~~~~s~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~ 155 (967)
T KOG0974|consen 81 ----QIIERFSDWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFG 155 (967)
T ss_pred ----hhhhhccccccccchhhhcc-eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccc
Confidence 11122223344444444434 44556668899999999888777766544422 233455666788888899
Q ss_pred eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 003279 702 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 780 (834)
Q Consensus 702 ~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L 780 (834)
.|.+|+.........+.+|.+.|.++.|+.||.++++.+ |.++++|++.+.+... ...-+|...+..++|+|+ .|
T Consensus 156 ~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n--~i 231 (967)
T KOG0974|consen 156 EIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN--RI 231 (967)
T ss_pred cEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc--ee
Confidence 999999884444446889999999999999999999999 8899999999985322 345578999999999999 89
Q ss_pred EEEEcCCeEEEEECCCCeEEEeccCC-CCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 781 LVIGCYETLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 781 ~sgs~dg~I~Iwdl~~~~~~~l~~h~-~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++++.|-+.++|+........+..|. ..|+.++..++...++|++.||.+++|+
T Consensus 232 ~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred EEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 99999999999987766655666664 5799999999999999999999999996
No 256
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.30 E-value=3.9e-10 Score=125.48 Aligned_cols=187 Identities=17% Similarity=0.272 Sum_probs=152.0
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEecc---CCCCeEEEEEC------C--------------CCCEEEEEeCCCeE
Q 003279 562 PDGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFS------P--------------SLSRLATSSADRTV 618 (834)
Q Consensus 562 pdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~---h~~~I~~l~fs------p--------------dg~~Latgs~Dg~I 618 (834)
|-..++|....||.++|||..+++....+.. -++..++..|. | +...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999998887766532 23445555552 1 23467888889999
Q ss_pred EEEecCCCCceeeee-ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEE
Q 003279 619 RVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILA 696 (834)
Q Consensus 619 ~IWDl~s~~~~i~~~-~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~ 696 (834)
.+|++..++...+.. ..|.+.|.++.++.+-. .|.+++.|+.+.+|+...+..++.+.. ...+.+++++||++.+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 999999877544433 56899999999987744 778999999999999999999988886 455889999999999888
Q ss_pred EEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCC-----CCEEEEEe--CCeEEEEEcCC
Q 003279 697 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS-----GEYLASVS--DELVRVWSIGS 751 (834)
Q Consensus 697 ~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spd-----g~~Lasgs--Dg~I~IwDl~s 751 (834)
++ +.|.+||+++++.+..|.+|.++|.++.|..+ |.++.++. +..+.+|-+..
T Consensus 162 as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 87 79999999999999999999999999999876 77887766 66788887765
No 257
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.28 E-value=6.3e-09 Score=117.30 Aligned_cols=251 Identities=10% Similarity=0.025 Sum_probs=161.1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEE-EEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCe-
Q 003279 563 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV- 640 (834)
Q Consensus 563 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~-l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V- 640 (834)
++..+++++.++.|+.+|.++|+.+....... .+.+ ... .+..++.++.++.|+.||..+++... .+......+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W-~~~~~~~~~~ 179 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLW-TYSRVTPALT 179 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceee-EEccCCCcee
Confidence 46678888899999999999999887664332 2221 112 34567778889999999999876522 222111111
Q ss_pred ----EEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCC-----------e-eEEEEecCCCEEEEEEcCCeEE
Q 003279 641 ----MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-----------A-TQMRFQPRLGRILAAAIENYIS 704 (834)
Q Consensus 641 ----~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~-----------i-~~l~~sp~g~~ll~~s~dg~I~ 704 (834)
.+..+. + . .++.+..++.+..+|+++|+.+........ + ....+ .++.+++++.++.++
T Consensus 180 ~~~~~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~ 254 (377)
T TIGR03300 180 LRGSASPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVA 254 (377)
T ss_pred ecCCCCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEE
Confidence 111122 2 2 456777789999999999987765442111 0 11111 356888888999999
Q ss_pred EEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEE
Q 003279 705 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLV 782 (834)
Q Consensus 705 iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-~~~~I~svafspdg~~L~s 782 (834)
.||.++++.+..... . ....+.. ++..+++++ ++.|+.+|..++ +.+..... ......+... .+..|++
T Consensus 255 a~d~~tG~~~W~~~~-~-~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG---~~~W~~~~~~~~~~ssp~i--~g~~l~~ 325 (377)
T TIGR03300 255 ALDLRSGRVLWKRDA-S-SYQGPAV--DDNRLYVTDADGVVVALDRRSG---SELWKNDELKYRQLTAPAV--VGGYLVV 325 (377)
T ss_pred EEECCCCcEEEeecc-C-CccCceE--eCCEEEEECCCCeEEEEECCCC---cEEEccccccCCccccCEE--ECCEEEE
Confidence 999999988776652 1 1122222 345565556 999999999888 33433321 1112222222 3568999
Q ss_pred EEcCCeEEEEECCCCeEE-EeccCCCCe-EEEEEeCCCCEEEEEecCCcEEEe
Q 003279 783 IGCYETLELWNMTENKTL-TLSAHDKLV-SSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 783 gs~dg~I~Iwdl~~~~~~-~l~~h~~~V-~~lafspdg~~LaSgs~DG~I~IW 833 (834)
++.+|.|+++|..+++.+ .+..+...+ ....+. + ..|+.++.||.|+.|
T Consensus 326 ~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 326 GDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 999999999999999988 444444333 333333 3 358888999999876
No 258
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=6.7e-10 Score=124.54 Aligned_cols=275 Identities=15% Similarity=0.189 Sum_probs=197.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC---------------eEEEEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---------------TVKSTLEEHTQWITDVRFSPSLSRLATSSADR 616 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~---------------~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg 616 (834)
.....|+.|+....+||+|+.||.++|..+.+. ..-.++.+|++.|.-+.|+.+...|-|+..+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 345899999999999999999999999976532 11245789999999999999999999999999
Q ss_pred eEEEEecCCCCceeeeec-cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEE
Q 003279 617 TVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL 695 (834)
Q Consensus 617 ~I~IWDl~s~~~~i~~~~-~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll 695 (834)
.|.||-+-.+.++...+. ...+.|.+++|..+|.. ++....||.|.+=.++..+.-..--.......+.|++|...++
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~k-IcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTK-ICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcE-EEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHH
Confidence 999999988776433332 34567899999999875 4567778888877766433221111123355789999999999
Q ss_pred EEEcCCeEEEEECCCC-------eEEEEE----eCCCCCEEEEEEc--------CCCCEEEEEe-CCeEEEEEcCCCCCc
Q 003279 696 AAAIENYISILDVETQ-------VCRLKL----QGHKNQVHSVCWN--------TSGEYLASVS-DELVRVWSIGSGSKG 755 (834)
Q Consensus 696 ~~s~dg~I~iwDl~t~-------~~~~~l----~~h~~~I~sl~~s--------pdg~~Lasgs-Dg~I~IwDl~s~~~~ 755 (834)
.+-..|.+.+||.... .+.... ......|..++|. ||...|+++. .|.+.|..-.+...+
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P 252 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP 252 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence 9999999999997642 222221 2223346677774 4667888888 788888765554322
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---------eEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEec
Q 003279 756 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 826 (834)
Q Consensus 756 ~~i~~~~~~~~~I~svafspdg~~L~sgs~dg---------~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~ 826 (834)
..+ ..+-.+..+.|+++|..|++++.+. .|.+|..-..-.-++......|++++|-..|-.+|.+ .
T Consensus 253 vv~----dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~A-v 327 (1189)
T KOG2041|consen 253 VVV----DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-V 327 (1189)
T ss_pred eEE----ecccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEE-e
Confidence 222 1246788899999999999998753 4666654444344677778899999998777666655 5
Q ss_pred CCcEEE
Q 003279 827 DKCVKI 832 (834)
Q Consensus 827 DG~I~I 832 (834)
|+.|++
T Consensus 328 dsfiyf 333 (1189)
T KOG2041|consen 328 DSFIYF 333 (1189)
T ss_pred cceEEE
Confidence 666654
No 259
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=3.5e-11 Score=131.11 Aligned_cols=280 Identities=15% Similarity=0.201 Sum_probs=194.0
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-------CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 003279 544 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 616 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t-------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg 616 (834)
....+.||...|..++--.+.+-+++++.|++|++|.++. ..+..++..|+.+|.++.|..+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 4567889999999998877888899999999999998753 34667788999999999999998888765 88
Q ss_pred eEEEEecCCCCceeeee----ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec------CCCeeEEE
Q 003279 617 TVRVWDTENPDYSLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMR 686 (834)
Q Consensus 617 ~I~IWDl~s~~~~i~~~----~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~------~~~i~~l~ 686 (834)
.|++||.-.+....... .+..+.|.|+.- -+...+++.|+...+|+++|.+.++.+..++. +.-+.+++
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 99999976554321111 122234444432 13344555668899999999999877666653 23478999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEE-EEcCCCCCceeEEEeecC
Q 003279 687 FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRV-WSIGSGSKGECIHELSCT 764 (834)
Q Consensus 687 ~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~I-wDl~s~~~~~~i~~~~~~ 764 (834)
+.+.|++++++-..|.|.+.|.++|+.+..+.........++- |....|+... |.++.| |..-.+ ......+..
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldg---imh~q~kpp 959 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDG---IMHLQDKPP 959 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCC---eeeeccCCC
Confidence 9999999999999999999999999988877655544444442 4555666555 888888 876554 111111111
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-------CeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 765 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTE-------NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 765 ~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~-------~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
..+. -.+-.-|+.+++......+.+|--.. -..++-....+..++++.-|-..-+..|...|.|.+
T Consensus 960 pepa--hflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 960 PEPA--HFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred Ccch--hhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 1111 11223456677777777777774221 111223345677888888887777888888898876
No 260
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=9.9e-10 Score=120.73 Aligned_cols=271 Identities=13% Similarity=0.185 Sum_probs=182.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeC-----------CCcEEEEeCCCCeEEEEeccC--CCCe-EEEEECCCCCEEEEEeCC
Q 003279 550 ASTSKVESCHFSPDGKLLATGGH-----------DKKAVLWCTESFTVKSTLEEH--TQWI-TDVRFSPSLSRLATSSAD 615 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~-----------Dg~I~IWd~~t~~~~~~l~~h--~~~I-~~l~fspdg~~Latgs~D 615 (834)
.|.+ |.-+.|||+.+||+|=+. ...++|||+.+|...+.+... ...+ .-+.||.|++++|--..
T Consensus 248 ~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~- 325 (698)
T KOG2314|consen 248 YHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG- 325 (698)
T ss_pred cCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-
Confidence 3555 889999999999998653 257999999999999887652 2223 34789999999988766
Q ss_pred CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEe-C----CCcEEEEECCCCceeeEeecC-CCeeEEEEec
Q 003279 616 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-N----NSEIRYWSINNGSCAGVFKCQ-SGATQMRFQP 689 (834)
Q Consensus 616 g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs-~----Dg~I~lwDl~s~~~i~~~~~~-~~i~~l~~sp 689 (834)
..|.||+..+-. .+..-.-.-..|....|+|.+. +||-=. . -..+.+..+.++..+++.... -.-..+.|..
T Consensus 326 ~sisIyEtpsf~-lld~Kslki~gIr~FswsP~~~-llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk 403 (698)
T KOG2314|consen 326 NSISIYETPSFM-LLDKKSLKISGIRDFSWSPTSN-LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK 403 (698)
T ss_pred ceEEEEecCcee-eecccccCCccccCcccCCCcc-eEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEecc
Confidence 468999877521 1211112235688889999865 443221 1 235677777777766655532 2234466777
Q ss_pred CCCEEEEEEc----------CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcC-CCCC
Q 003279 690 RLGRILAAAI----------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIG-SGSK 754 (834)
Q Consensus 690 ~g~~ll~~s~----------dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs----Dg~I~IwDl~-s~~~ 754 (834)
.|.+|.+-.. -..+.|+.++........-.-...|...+|.|.|..+++-+ ..++.+|.+. +...
T Consensus 404 ~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~ 483 (698)
T KOG2314|consen 404 SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK 483 (698)
T ss_pred CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCc
Confidence 7777665432 12456666665533222223567889999999998877655 3489999988 3433
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEc---CCeEEEEECCCCe--EEEeccCCCCeEEEEEeCCCCEEEEEecC
Q 003279 755 GECIHELSCTGNKFHSCVFHPTFPSLLVIGC---YETLELWNMTENK--TLTLSAHDKLVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 755 ~~~i~~~~~~~~~I~svafspdg~~L~sgs~---dg~I~Iwdl~~~~--~~~l~~h~~~V~~lafspdg~~LaSgs~D 827 (834)
...+..+. ....+.+.|+|.|.++++++- .|.+.++|+.-.. .+....| ...+.+.|.|.|+|++|++.-
T Consensus 484 ~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 484 PSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred hhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeeh
Confidence 34444444 356788999999999887654 5689999998533 3333334 346789999999999999864
No 261
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1.3e-09 Score=120.41 Aligned_cols=248 Identities=12% Similarity=0.169 Sum_probs=174.1
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCC--EEEE-----EeCCCeEEEEecCCCCc
Q 003279 556 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLAT-----SSADRTVRVWDTENPDY 628 (834)
Q Consensus 556 ~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~--~Lat-----gs~Dg~I~IWDl~s~~~ 628 (834)
++..|+.|..+.|-- ..+.|.+|++.+.+.+.. +-|...|+.+.++|.+. .+|+ .+.-..|+||.+.....
T Consensus 129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhhh-hcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 688999988654432 246899999887554422 23678899999999632 3333 24456899998873221
Q ss_pred --e--eeeeccCCCCeEEEEEccCCCcEEEEEeC--C---------CcEEEEECCCCceeeEeecCCCeeEEEEecCCCE
Q 003279 629 --S--LRTFTGHSTTVMSLDFHPSKEDLLCSCDN--N---------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 693 (834)
Q Consensus 629 --~--i~~~~~h~~~V~sl~fspdg~~llasgs~--D---------g~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ 693 (834)
. .++| ....-..+.|++-|.-+|+.++. | .+++++++....+...+...++|.++.|+++++.
T Consensus 207 ~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 207 HQPVANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred cchhhhccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCE
Confidence 1 1222 12334457788877777665543 2 3788899986677777777899999999999988
Q ss_pred EEEEE--cCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003279 694 ILAAA--IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNK 767 (834)
Q Consensus 694 ll~~s--~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs----Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 767 (834)
|+++. .-..+.|||++. .++..+ ..++-+++-|+|.|++|+.++ -|.|.|||+.+. +++..+....
T Consensus 285 F~VvyGfMPAkvtifnlr~-~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~---K~i~~~~a~~-- 356 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLRG-KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR---KLIAKFKAAN-- 356 (566)
T ss_pred EEEEEecccceEEEEcCCC-CEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch---hhccccccCC--
Confidence 76655 357899999974 445444 456778999999999998877 569999999885 6676666543
Q ss_pred eEEEEEeCCCCEEEEEEc------CCeEEEEECCCCeEEEeccCCCCeEEEEEeC
Q 003279 768 FHSCVFHPTFPSLLVIGC------YETLELWNMTENKTLTLSAHDKLVSSLAAST 816 (834)
Q Consensus 768 I~svafspdg~~L~sgs~------dg~I~Iwdl~~~~~~~l~~h~~~V~~lafsp 816 (834)
.+-+.|+|||.+|++++. |+.++||+.....+.. .........++|-|
T Consensus 357 tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~-~~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 357 TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHE-KMFKSELLQVEWRP 410 (566)
T ss_pred ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeeh-hhhhHhHhheeeee
Confidence 456799999999999876 5689999987654432 11122566777765
No 262
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.24 E-value=5.4e-10 Score=131.06 Aligned_cols=145 Identities=22% Similarity=0.367 Sum_probs=120.8
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 581 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~ 581 (834)
..-.+++|+.-+.+-+|....+..+ ..+.||.+.|.++.|+.||+++++.+.|.++++|++
T Consensus 144 ~~~~i~~gsv~~~iivW~~~~dn~p-------------------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i 204 (967)
T KOG0974|consen 144 EELYIASGSVFGEIIVWKPHEDNKP-------------------IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPI 204 (967)
T ss_pred cEEEEEeccccccEEEEeccccCCc-------------------ceecccCCceEEEEEccCCcEEEEEecCcceeeeec
Confidence 3457788888888888866633211 157899999999999999999999999999999999
Q ss_pred CCCeEEE-EeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCC-CCeEEEEEccCCCcEEEEEeCC
Q 003279 582 ESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNN 659 (834)
Q Consensus 582 ~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~-~~V~sl~fspdg~~llasgs~D 659 (834)
++.+... +.-+|+..|..++|.|+ +++|++.|-+.++|+.+... +..+.+|. ..|..++..++ ..++++++.|
T Consensus 205 ~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~--l~~y~~h~g~~iw~~~~~~~-~~~~vT~g~D 279 (967)
T KOG0974|consen 205 DSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ--LEVYDEHSGKGIWKIAVPIG-VIIKVTGGND 279 (967)
T ss_pred ccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccce--ehhhhhhhhcceeEEEEcCC-ceEEEeeccC
Confidence 9988876 66789999999999998 99999999999999877533 45777775 56888888776 5588899999
Q ss_pred CcEEEEECCCC
Q 003279 660 SEIRYWSINNG 670 (834)
Q Consensus 660 g~I~lwDl~s~ 670 (834)
+.+++||+...
T Consensus 280 s~lk~~~l~~r 290 (967)
T KOG0974|consen 280 STLKLWDLNGR 290 (967)
T ss_pred cchhhhhhhcc
Confidence 99999998653
No 263
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.22 E-value=1.9e-10 Score=117.97 Aligned_cols=198 Identities=20% Similarity=0.257 Sum_probs=155.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE--EeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCCc-ee
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDY-SL 630 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~--~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~s~~~-~i 630 (834)
..++.|++.+.-++++..+|.+.+-+........ .++.|.-.++.+.|+. +.+++++|+.|+.+..||++.++. ..
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 4578899999999999999999977665555544 7899999999999986 456899999999999999995443 33
Q ss_pred eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC-CCceeeEeecCCCeeEEEEecCC-CEEEEEEcCCeEEEEEC
Q 003279 631 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDV 708 (834)
Q Consensus 631 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~-s~~~i~~~~~~~~i~~l~~sp~g-~~ll~~s~dg~I~iwDl 708 (834)
.....|...|.+|.-+|....++++|+.|-.|++||.+ -++++..-...++|..+.++|.. ..+++++.-+..+|.+.
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~ 283 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDS 283 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEe
Confidence 44667899999999999888999999999999999999 47888877778999999999953 34566666667777777
Q ss_pred CCC--e---EEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEE-EEEcCCC
Q 003279 709 ETQ--V---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVR-VWSIGSG 752 (834)
Q Consensus 709 ~t~--~---~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~-IwDl~s~ 752 (834)
..+ + .....+.|.+-+..-.|.....+|++|+ |+.++ +|-.-++
T Consensus 284 ~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 284 SDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 654 2 3344556777777777766667889887 77755 7755444
No 264
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.21 E-value=4.4e-08 Score=107.68 Aligned_cols=234 Identities=11% Similarity=0.123 Sum_probs=148.6
Q ss_pred EcCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEeccCCC-------CeEEEEECCCCCEEEEEe-C-CCeEEE
Q 003279 560 FSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSPSLSRLATSS-A-DRTVRV 620 (834)
Q Consensus 560 fSpdg~~Lasgs~----------Dg~I~IWd~~t~~~~~~l~~h~~-------~I~~l~fspdg~~Latgs-~-Dg~I~I 620 (834)
+||||+.|+++.. +..|.+||..+++.+..+..... ....++++|||++|++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998887765 78999999999999988864222 334889999999999776 3 689999
Q ss_pred EecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-Ccee-eE---eec-CCCe-eEEEEec-CCC
Q 003279 621 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCA-GV---FKC-QSGA-TQMRFQP-RLG 692 (834)
Q Consensus 621 WDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s-~~~i-~~---~~~-~~~i-~~l~~sp-~g~ 692 (834)
+|+.+.+. +..+.-. +...-+..+.+ .++ +.| .||......+.+ ++.. .. +.. ...+ ..-.|.+ +++
T Consensus 133 vD~~~~kv-v~ei~vp-~~~~vy~t~e~-~~~-~~~-~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~ 207 (352)
T TIGR02658 133 VDLEGKAF-VRMMDVP-DCYHIFPTAND-TFF-MHC-RDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR 207 (352)
T ss_pred EECCCCcE-EEEEeCC-CCcEEEEecCC-ccE-EEe-ecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc
Confidence 99998765 3333321 11111112211 211 122 244444333322 2211 11 111 0000 0114456 666
Q ss_pred EEEEEEcCCeEEEEECCCC-----eEEEEEeC-------CCCCEEEEEEcCCCCEEEEEe-----------CCeEEEEEc
Q 003279 693 RILAAAIENYISILDVETQ-----VCRLKLQG-------HKNQVHSVCWNTSGEYLASVS-----------DELVRVWSI 749 (834)
Q Consensus 693 ~ll~~s~dg~I~iwDl~t~-----~~~~~l~~-------h~~~I~sl~~spdg~~Lasgs-----------Dg~I~IwDl 749 (834)
++++... |.|++.|+... .....+.. ..+.+.-++++++++.+++.. .+.|.++|.
T Consensus 208 ~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 208 LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 6655555 99999996443 22222211 233344599999999888742 258999999
Q ss_pred CCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCeEEEec
Q 003279 750 GSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENKTLTLS 803 (834)
Q Consensus 750 ~s~~~~~~i~~~~~~~~~I~svafspdg~-~L~sgs-~dg~I~Iwdl~~~~~~~l~ 803 (834)
.+. +.+..+.. ...+..++++||++ .|++.. .++.|.++|..+++.+...
T Consensus 287 ~t~---kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 287 KTG---KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCC---eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 888 66666654 56889999999999 777666 4678999999999888443
No 265
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=1.1e-08 Score=116.51 Aligned_cols=228 Identities=12% Similarity=0.066 Sum_probs=151.9
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCE-EEEEeCC---CeEEEEecCCCCceeeeeccCCCCeEEEEEccCC
Q 003279 574 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 649 (834)
Q Consensus 574 g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~-Latgs~D---g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg 649 (834)
..|.+-|.+..... .+.... .+....|+||++. ++..+.+ ..|+++|+.+++. +.+....+.+....|+|||
T Consensus 169 ~~l~~~d~dg~~~~-~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTYQK-VIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCcee-EEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCC
Confidence 35666565544333 333333 7889999999984 6654443 4689999987653 3333355666778899999
Q ss_pred CcEEEEEeCC--CcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEEeCCCCCE
Q 003279 650 EDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQV 724 (834)
Q Consensus 650 ~~llasgs~D--g~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d-g--~I~iwDl~t~~~~~~l~~h~~~I 724 (834)
..++++.+.+ ..|+++|+.++................|+|||+.|+..+.. + .|+++|+.+++....... ..
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~-- 321 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK-- 321 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--
Confidence 9888877655 46888898887755444333334567899999998887753 2 688999988766433321 11
Q ss_pred EEEEEcCCCCEEEEEe-C-------C--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEE
Q 003279 725 HSVCWNTSGEYLASVS-D-------E--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLEL 791 (834)
Q Consensus 725 ~sl~~spdg~~Lasgs-D-------g--~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg---~I~I 791 (834)
....|+|||++|+... . + .|.+.|+.++.. ..+... .......|+|||+.|+..+.++ .|.+
T Consensus 322 ~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~----~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 322 NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI----RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe----EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 1248999999988776 2 2 688888877632 222222 2233588999999888876544 5888
Q ss_pred EECCCCeEEEeccCCCCeEEEE
Q 003279 792 WNMTENKTLTLSAHDKLVSSLA 813 (834)
Q Consensus 792 wdl~~~~~~~l~~h~~~V~~la 813 (834)
+++.......+....+.|...+
T Consensus 397 ~~l~g~~~~~l~~~~g~~~~p~ 418 (419)
T PRK04043 397 IRLNYNKSFLFPLKVGKIQSID 418 (419)
T ss_pred EecCCCeeEEeecCCCccCCCC
Confidence 8988877766655555554443
No 266
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.19 E-value=2.2e-09 Score=112.14 Aligned_cols=239 Identities=17% Similarity=0.292 Sum_probs=167.3
Q ss_pred ccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCC------------CCeEEEEEcCCCC-
Q 003279 499 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST------------SKVESCHFSPDGK- 565 (834)
Q Consensus 499 ~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~------------~~V~sl~fSpdg~- 565 (834)
++-...+|++|..++.|.+|.-..... + .+.....+..|. .+|..+.|.+++.
T Consensus 33 f~~~Ge~LatGdkgGRVv~f~r~~~~~-------------~-ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 33 FDHYGERLATGDKGGRVVLFEREKLYK-------------G-EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred eecccceEeecCCCCeEEEeecccccc-------------c-ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc
Confidence 344458999999999999995443322 1 222333333443 4688999998765
Q ss_pred -EEEEEeCCCcEEEEeCCCCeEE-----------------------------------EEe-ccCCCCeEEEEECCCCCE
Q 003279 566 -LLATGGHDKKAVLWCTESFTVK-----------------------------------STL-EEHTQWITDVRFSPSLSR 608 (834)
Q Consensus 566 -~Lasgs~Dg~I~IWd~~t~~~~-----------------------------------~~l-~~h~~~I~~l~fspdg~~ 608 (834)
.++..+.|++|++|.+...... +.+ ..|+.-|++|.++.|...
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et 178 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET 178 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence 5667778999999976421110 111 258888999999999998
Q ss_pred EEEEeCCCeEEEEecCCCCce--eeeeccC-----CCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCcee----eEee
Q 003279 609 LATSSADRTVRVWDTENPDYS--LRTFTGH-----STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA----GVFK 677 (834)
Q Consensus 609 Latgs~Dg~I~IWDl~s~~~~--i~~~~~h-----~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i----~~~~ 677 (834)
++++ .|=.|.+|+++-.... +.-++.+ ..-|++..|+|....+|+-.+..|+|++.|++....- +.+.
T Consensus 179 ~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 179 FLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred Eeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence 8887 6778999998754432 2223333 3468899999988888888888999999999843211 1111
Q ss_pred c-------------CCCeeEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEEEEeCCCC------------CE---EEEE
Q 003279 678 C-------------QSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQGHKN------------QV---HSVC 728 (834)
Q Consensus 678 ~-------------~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~-t~~~~~~l~~h~~------------~I---~sl~ 728 (834)
. -..|..+.|++.|+++++-.. -+|++||+. ..+++.++.-|.. .| ..++
T Consensus 258 epedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~ 336 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECS 336 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEE
Confidence 0 234788999999998876543 789999994 4566666665532 22 4579
Q ss_pred EcCCCCEEEEEe-CCeEEEEEcCCCC
Q 003279 729 WNTSGEYLASVS-DELVRVWSIGSGS 753 (834)
Q Consensus 729 ~spdg~~Lasgs-Dg~I~IwDl~s~~ 753 (834)
|+.++.++.+|+ .+.+++|++..+.
T Consensus 337 ~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 337 WSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EcCCcceEecccccceEEEecCCCCc
Confidence 999999999999 8899999976553
No 267
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.18 E-value=1.8e-08 Score=113.57 Aligned_cols=252 Identities=13% Similarity=0.079 Sum_probs=161.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEE
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 643 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl 643 (834)
+..|++++.++.|..+|..+|+.+............+.. ++..+++++.++.|+.+|..+++....... ...+.+.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~ 140 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKL--SSEVLSP 140 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeecc--CceeecC
Confidence 568888889999999999999998776544332223333 467888888999999999988775332221 1222221
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCee------EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 003279 644 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT------QMRFQPRLGRILAAAIENYISILDVETQVCRLKL 717 (834)
Q Consensus 644 ~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~------~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l 717 (834)
-.. .+. .++.++.++.|+.||.++++.+..+....... +..+. ++.++++..++.+..+|.++++.+...
T Consensus 141 p~v-~~~-~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 141 PLV-ANG-LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred CEE-ECC-EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeee
Confidence 111 123 34456679999999999999888776543321 11222 357788888899999999999876554
Q ss_pred eCCCC----C------E-EEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003279 718 QGHKN----Q------V-HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 785 (834)
Q Consensus 718 ~~h~~----~------I-~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~ 785 (834)
..... . + .+..+ .+..+++++ ++.++.||..++ +.+..... ....... ..+..|++++.
T Consensus 217 ~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG---~~~W~~~~--~~~~~p~--~~~~~vyv~~~ 287 (377)
T TIGR03300 217 RVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSG---RVLWKRDA--SSYQGPA--VDDNRLYVTDA 287 (377)
T ss_pred ccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCC---cEEEeecc--CCccCce--EeCCEEEEECC
Confidence 31100 0 1 11111 234555555 999999999888 33333331 1111222 34567888899
Q ss_pred CCeEEEEECCCCeEEE-eccC-CCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 786 YETLELWNMTENKTLT-LSAH-DKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 786 dg~I~Iwdl~~~~~~~-l~~h-~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++.|+.+|..+++.+- .... ...+..... .+..|++++.||.|++||
T Consensus 288 ~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 288 DGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred CCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence 9999999999998772 2121 122223232 366888899999998875
No 268
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.18 E-value=2.2e-08 Score=108.44 Aligned_cols=281 Identities=13% Similarity=0.093 Sum_probs=187.5
Q ss_pred ccccccCC-CeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeEEEEeccCCCC--eEEEEECCCC
Q 003279 531 GRSAEVGK-GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQW--ITDVRFSPSL 606 (834)
Q Consensus 531 ~~~~~~~~-g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~-t~~~~~~l~~h~~~--I~~l~fspdg 606 (834)
+.+|-... |.++..+-.+.+| |+|-.+-. ++..+....||.=.||.++ +|+-+ +.|+.. -.+=..+.||
T Consensus 206 GklWis~d~g~tFeK~vdl~~~---vS~PmIV~-~RvYFlsD~eG~GnlYSvdldGkDl---rrHTnFtdYY~R~~nsDG 278 (668)
T COG4946 206 GKLWISSDGGKTFEKFVDLDGN---VSSPMIVG-ERVYFLSDHEGVGNLYSVDLDGKDL---RRHTNFTDYYPRNANSDG 278 (668)
T ss_pred ceEEEEecCCcceeeeeecCCC---cCCceEEc-ceEEEEecccCccceEEeccCCchh---hhcCCchhccccccCCCC
Confidence 34444443 4478888888887 43433332 3333445556655555443 23322 223321 2233345688
Q ss_pred CEEEEEeCCCeEEEEecCCCCceeeeec-----cC-----CCCeEEEE-EccCCCcEEEEEeCCCcEEEEECCCCceeeE
Q 003279 607 SRLATSSADRTVRVWDTENPDYSLRTFT-----GH-----STTVMSLD-FHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 675 (834)
Q Consensus 607 ~~Latgs~Dg~I~IWDl~s~~~~i~~~~-----~h-----~~~V~sl~-fspdg~~llasgs~Dg~I~lwDl~s~~~i~~ 675 (834)
+.++.. ..|.|++||..+.......+. .. ..+..-+. |++-...+++..+ .|...+.+...+-.+.
T Consensus 279 krIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iq- 355 (668)
T COG4946 279 KRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQ- 355 (668)
T ss_pred cEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEE-
Confidence 887765 567899999987653221111 00 01111121 4443444665666 5677777766554443
Q ss_pred eecCCCeeEEEEecCCCEEEEEEcCC-eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC
Q 003279 676 FKCQSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 753 (834)
Q Consensus 676 ~~~~~~i~~l~~sp~g~~ll~~s~dg-~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~ 753 (834)
+.+..+|.-..+.-+...++.|..|| .+-|||.++++... +...-+.|.++..+++|++++++. ...|.++|+.++.
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 34456688888888888899999998 99999999887544 445678899999999999999988 5589999999983
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC----eEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEe
Q 003279 754 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE----TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 754 ~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg----~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs 825 (834)
....-....+-|+.++|||++++|+.+--+| .|++||+.+++........+.=.+-+|.||+++|.--+
T Consensus 435 ---v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 435 ---VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ---eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 3223334567799999999999999988777 79999999999987776666677889999999876544
No 269
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.17 E-value=2e-10 Score=129.25 Aligned_cols=279 Identities=18% Similarity=0.316 Sum_probs=195.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEEEecc-CCCCeEEEEECCC--CCEEEEEeCCCeEEEEecCCCC
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEE-HTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPD 627 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t-~~~~~~l~~-h~~~I~~l~fspd--g~~Latgs~Dg~I~IWDl~s~~ 627 (834)
.+.+.++.++|.|+-+|.++.-| +.+.|++. +.+..-+.. ..-.|-++.|++. ..+-++......-.+|++....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 34578899999999999998866 44556553 344333321 1223677888875 3345555555567789886432
Q ss_pred --ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc-eeeEee-cCCCeeEEEEecCCCEEEEEEcCCeE
Q 003279 628 --YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQMRFQPRLGRILAAAIENYI 703 (834)
Q Consensus 628 --~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~-~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I 703 (834)
..-..+.+|...|+.+.|+|....++++|+.|-.+..||+++.. .+..+. -+.....+.|+.....+++.+..+.|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 33456678999999999999999999999999999999999754 333333 36778899999988899999999999
Q ss_pred EEEECCCC-eEEEEEeCCCCCEEEEEEcCC--CCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 003279 704 SILDVETQ-VCRLKLQGHKNQVHSVCWNTS--GEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 780 (834)
Q Consensus 704 ~iwDl~t~-~~~~~l~~h~~~I~sl~~spd--g~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L 780 (834)
.+||++.+ .++..+++|...|+.+.|..- +..+.+..|++|+.||...... .-........+|....+-|-|.-.
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~--e~~~~vtt~~piw~~r~~Pfg~g~ 260 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT--ESKRTVTTNFPIWRGRYLPFGEGY 260 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc--ccceeccccCcceeccccccCcee
Confidence 99999987 678888999999999998752 3444444499999999986532 222223345667767777765433
Q ss_pred EEE--EcCCeEEE---------EECCCC-eEE-EeccCCCCeEEEEEeCCC--------C--EEEEEecCCcEEEe
Q 003279 781 LVI--GCYETLEL---------WNMTEN-KTL-TLSAHDKLVSSLAASTVN--------G--MVASASHDKCVKIW 833 (834)
Q Consensus 781 ~sg--s~dg~I~I---------wdl~~~-~~~-~l~~h~~~V~~lafspdg--------~--~LaSgs~DG~I~IW 833 (834)
++- -.+..+.+ |+..++ ..+ ++.+|+..|...-|-..+ + .|+|-+.|..+++|
T Consensus 261 ~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 261 CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred EeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 221 11223333 443332 233 788999998777664322 2 79999999999999
No 270
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.17 E-value=2.8e-09 Score=118.75 Aligned_cols=188 Identities=19% Similarity=0.310 Sum_probs=150.2
Q ss_pred CCCCEEEEEeCCCeEEEEecCCCCceeeeec---cCCCCeEEEEEc------c-------------CCCcEEEEEeCCCc
Q 003279 604 PSLSRLATSSADRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFH------P-------------SKEDLLCSCDNNSE 661 (834)
Q Consensus 604 pdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~---~h~~~V~sl~fs------p-------------dg~~llasgs~Dg~ 661 (834)
|...++|....||.++|||...++.. ..+. .-.+..++..|. | .+..+++-|...|.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~-~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQ-QEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceee-eeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 44678999999999999999876642 2221 122344444442 2 13456778888999
Q ss_pred EEEEECCCCceeeEee---cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 003279 662 IRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 738 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~---~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Las 738 (834)
|.+|++..++....+. +.+.+.++.++.+-..|.+++.|..+..|+......+..+......+.+++++|||..+++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 9999999999988887 3567899999999999999999999999999999999999998999999999999998887
Q ss_pred EeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC-----CCEEEEEEc-CCeEEEEECCC
Q 003279 739 VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT-----FPSLLVIGC-YETLELWNMTE 796 (834)
Q Consensus 739 gsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspd-----g~~L~sgs~-dg~I~Iwdl~~ 796 (834)
++ +.|++||+++. +.+..|.+|.++|.++.|.-+ |.+++++.. +..|.+|-+..
T Consensus 162 as-~~ik~~~~~~k---evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 AS-RQIKVLDIETK---EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc-ceEEEEEccCc---eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 65 67999999998 899999999999999999877 666665544 34566665543
No 271
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.17 E-value=5.5e-09 Score=114.30 Aligned_cols=271 Identities=18% Similarity=0.201 Sum_probs=186.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC--------------
Q 003279 551 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-------------- 616 (834)
Q Consensus 551 H~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg-------------- 616 (834)
-.-++..++|||.|++|++... ..|.+|+...+..+..+. | ..|..+.|+|.++||.|=+...
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhc-cceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 4456888999999999998765 468999988877665654 4 3599999999999999976533
Q ss_pred -eEEEEecCCCCceeeeeccCCCC--eE-EEEEccCCCcEEEEEeCCCcEEEEECCCCcee-eEeec--CCCeeEEEEec
Q 003279 617 -TVRVWDTENPDYSLRTFTGHSTT--VM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKC--QSGATQMRFQP 689 (834)
Q Consensus 617 -~I~IWDl~s~~~~i~~~~~h~~~--V~-sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i-~~~~~--~~~i~~l~~sp 689 (834)
.+.+||+.++.. +..+.....+ .+ -+.|+-+..+.+-.. ...++|+++ ++... ..+.. ..++....|+|
T Consensus 108 n~~~vwd~~sg~i-v~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv--~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP 183 (561)
T COG5354 108 NNVFVWDIASGMI-VFSFNGISQPYLGWPVLKFSIDDKYVARVV--GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISP 183 (561)
T ss_pred CceeEEeccCcee-EeeccccCCcccccceeeeeecchhhhhhc--cCeEEEEec-CCccccCchhhccccceeeEEecC
Confidence 499999998664 6666655544 44 567887765444332 457899997 33221 11111 36688888988
Q ss_pred CCCE--EEEE-----EcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe------------CCeEEEEEcC
Q 003279 690 RLGR--ILAA-----AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS------------DELVRVWSIG 750 (834)
Q Consensus 690 ~g~~--ll~~-----s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs------------Dg~I~IwDl~ 750 (834)
.++. |++- +..+.+++|.+..+..+....-....-..+.|.+.|++|++-- +..++|+++.
T Consensus 184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT 263 (561)
T ss_pred CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec
Confidence 6432 3332 2356899999987765544332233335688999998876532 2468888887
Q ss_pred CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc--CCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecC-
Q 003279 751 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC--YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD- 827 (834)
Q Consensus 751 s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~--dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~D- 827 (834)
.. .+.......++|..++|.|.++.+++++. .-.+.++|++.+ +.+......-..+.|+|.+++++.++-|
T Consensus 264 e~----~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~n 337 (561)
T COG5354 264 ER----SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDN 337 (561)
T ss_pred cc----ccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCc
Confidence 43 22222245789999999999988887774 448999999888 4444555666677888888888887755
Q ss_pred --CcEEEeC
Q 003279 828 --KCVKIWK 834 (834)
Q Consensus 828 --G~I~IWd 834 (834)
|.|-|||
T Consensus 338 l~gni~i~~ 346 (561)
T COG5354 338 LQGNIEIFD 346 (561)
T ss_pred cccceEEec
Confidence 5677765
No 272
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=7.5e-09 Score=113.95 Aligned_cols=270 Identities=16% Similarity=0.211 Sum_probs=185.1
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC-----------CCeEEEEecC
Q 003279 556 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----------DRTVRVWDTE 624 (834)
Q Consensus 556 ~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~-----------Dg~I~IWDl~ 624 (834)
+-+.|||.|.||+|--. .-|.+|--++...+..+. |.+ |.-+.|||+.+||+|-+. ...|+|||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk-~GI~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHK-QGIALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEec-cceeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 45899999999998765 458899888877777774 654 899999999999998654 2579999999
Q ss_pred CCCceeeeecc--CCCCeE-EEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcC
Q 003279 625 NPDYSLRTFTG--HSTTVM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 625 s~~~~i~~~~~--h~~~V~-sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~d 700 (834)
++.. .+.+.. ....+. -+.|+.|++++.... ...|.||+..+-.++..-. ...+|....|+|.+..|+.-...
T Consensus 291 tG~l-krsF~~~~~~~~~WP~frWS~DdKy~Arm~--~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 291 TGLL-KRSFPVIKSPYLKWPIFRWSHDDKYFARMT--GNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred ccch-hcceeccCCCccccceEEeccCCceeEEec--cceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence 9765 444443 222333 358999877444333 3679999887643332222 14678999999998877765432
Q ss_pred -----CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-----------eEEEEEcCCCCCceeEEEeecC
Q 003279 701 -----NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-----------LVRVWSIGSGSKGECIHELSCT 764 (834)
Q Consensus 701 -----g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg-----------~I~IwDl~s~~~~~~i~~~~~~ 764 (834)
..+.+..+.++..+++..-|.-.=..+.|-.+|.+|+.--|. .+-|+.++.... ++..+ .-
T Consensus 368 ~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI--pve~v-el 444 (698)
T KOG2314|consen 368 TNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI--PVEVV-EL 444 (698)
T ss_pred ccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC--Cceee-ec
Confidence 367888888887776655454444467888899999875422 355666665432 22222 23
Q ss_pred CCceEEEEEeCCCCEEEEEEcCC---eEEEEECCC-CeEEEec--cCCCCeEEEEEeCCCCEEEEEe---cCCcEEEeC
Q 003279 765 GNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTE-NKTLTLS--AHDKLVSSLAASTVNGMVASAS---HDKCVKIWK 834 (834)
Q Consensus 765 ~~~I~svafspdg~~L~sgs~dg---~I~Iwdl~~-~~~~~l~--~h~~~V~~lafspdg~~LaSgs---~DG~I~IWd 834 (834)
...|...+|.|.|..+++.+.+. ++.+|.+++ .....+. -.....+.+.|+|.|++++.+. ..|.+.++|
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEe
Confidence 56788999999999888776654 789998873 2222111 1235677899999999888765 456777665
No 273
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.14 E-value=2.4e-09 Score=112.08 Aligned_cols=279 Identities=14% Similarity=0.200 Sum_probs=185.7
Q ss_pred cCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003279 500 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 579 (834)
Q Consensus 500 ~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IW 579 (834)
...+.-+.+.+.|.++++|+-.+...-. ..+ ...-..+++++.+.++...|++|-..|++.-+
T Consensus 33 ~~~e~gv~~~s~drtvrv~lkrds~q~w---------------psI--~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 33 IPKEEGVISVSEDRTVRVWLKRDSGQYW---------------PSI--YHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred ccCCCCeEEccccceeeeEEeccccccC---------------chh--hhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 4445556788999999999877654321 111 12345679999999999999999999999988
Q ss_pred eCC----CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC------------------------------
Q 003279 580 CTE----SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN------------------------------ 625 (834)
Q Consensus 580 d~~----t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s------------------------------ 625 (834)
.+. .....+....|...|..+.|+-..+++++.+.|..+.---.+.
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~g 175 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSG 175 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccccc
Confidence 553 3445556667888999998888777777777665432111110
Q ss_pred ----------CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC--ceeeEeecCCCeeEEEEecCCCE
Q 003279 626 ----------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKCQSGATQMRFQPRLGR 693 (834)
Q Consensus 626 ----------~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~--~~i~~~~~~~~i~~l~~sp~g~~ 693 (834)
.-..+.++.+|.+.+.+++|.+.. .++++|..|..|.+||+.-. .....+.+...+..+.+.+--..
T Consensus 176 qvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~ 254 (404)
T KOG1409|consen 176 QITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQ 254 (404)
T ss_pred ceEEEEEeecCCceEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhee
Confidence 012356778899999999999874 47789999999999999643 34444556777888888887788
Q ss_pred EEEEEcCCeEEEEECCCCeEEEE-Ee----------------------------CC-----CCCEEEEEEcCCCCEEEEE
Q 003279 694 ILAAAIENYISILDVETQVCRLK-LQ----------------------------GH-----KNQVHSVCWNTSGEYLASV 739 (834)
Q Consensus 694 ll~~s~dg~I~iwDl~t~~~~~~-l~----------------------------~h-----~~~I~sl~~spdg~~Lasg 739 (834)
+++++.||.|.+||++....... .. -| ...|...+-+....+...+
T Consensus 255 l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg 334 (404)
T KOG1409|consen 255 LISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMG 334 (404)
T ss_pred eeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcccccccc
Confidence 99999999999999976432210 00 00 0111112222222222222
Q ss_pred eCCeEEEEEcCCC----CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 740 SDELVRVWSIGSG----SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 740 sDg~I~IwDl~s~----~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
.+-.+++.|--.. ....++..+......|+.+.+..+-..|+++|.|..|+|||++.
T Consensus 335 ~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 335 FEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred ceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 2334454442211 01123444444556788888888888999999999999999864
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.13 E-value=3.3e-08 Score=124.21 Aligned_cols=233 Identities=11% Similarity=0.115 Sum_probs=156.8
Q ss_pred EEEEECCC-CCEEEEEeCCCeEEEEecCCCCceeeeecc--C------------CCCeEEEEEccCCCcEEEEEeCCCcE
Q 003279 598 TDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTG--H------------STTVMSLDFHPSKEDLLCSCDNNSEI 662 (834)
Q Consensus 598 ~~l~fspd-g~~Latgs~Dg~I~IWDl~s~~~~i~~~~~--h------------~~~V~sl~fspdg~~llasgs~Dg~I 662 (834)
..++++++ +.++++-+..+.|++||... .. +..+.+ . -.....|+++++++.++++-..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 46788774 56677777788999999864 32 222221 1 12357899998877666555556789
Q ss_pred EEEECCCCceeeEeec-----------------CCCeeEEEEecCCCEE-EEEEcCCeEEEEECCCCeEEEEEeCC----
Q 003279 663 RYWSINNGSCAGVFKC-----------------QSGATQMRFQPRLGRI-LAAAIENYISILDVETQVCRLKLQGH---- 720 (834)
Q Consensus 663 ~lwDl~s~~~i~~~~~-----------------~~~i~~l~~sp~g~~l-l~~s~dg~I~iwDl~t~~~~~~l~~h---- 720 (834)
+++|+.++........ -.....++++|+++.+ ++...++.|++||..++.... +.+.
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYER 727 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccc
Confidence 9999987653322110 1124578999955555 445567899999998875432 2111
Q ss_pred -----------CCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEE-----------Eeec--------CCCce
Q 003279 721 -----------KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIH-----------ELSC--------TGNKF 768 (834)
Q Consensus 721 -----------~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~-----------~~~~--------~~~~I 768 (834)
-.....|+|+|++..|+++. ++.|++||+.++.. ..+. .+.. .....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~-~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS-RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecccccCcccccccCCCCchhhhhccCC
Confidence 12346799999998666555 78999999987632 1110 0000 01124
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccC--------------CCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 769 HSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH--------------DKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 769 ~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h--------------~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
..++++++|..+++-..++.|++||..++.+..+.+. -.....|+++++|+++++-+.++.|++||
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 6889999998777777788999999998877654332 13578899999999999888999999996
No 275
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.12 E-value=1.3e-09 Score=112.28 Aligned_cols=239 Identities=17% Similarity=0.329 Sum_probs=163.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-----EEEEeccCC------------CCeEEEEECCCC--CEEEEE
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----VKSTLEEHT------------QWITDVRFSPSL--SRLATS 612 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~-----~~~~l~~h~------------~~I~~l~fspdg--~~Latg 612 (834)
.+.|+++.|...|.||++|...|.|.+|.-+... ....+.+|. ..|..|.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4569999999999999999999999999754322 222344443 357888888753 356777
Q ss_pred eCCCeEEEEecCCCCc-----------------------------------------eeeee-ccCCCCeEEEEEccCCC
Q 003279 613 SADRTVRVWDTENPDY-----------------------------------------SLRTF-TGHSTTVMSLDFHPSKE 650 (834)
Q Consensus 613 s~Dg~I~IWDl~s~~~-----------------------------------------~i~~~-~~h~~~V~sl~fspdg~ 650 (834)
+.|++|++|.+..... +.+.+ ..|...|.++.|..|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 7999999998864310 01112 35777889999998877
Q ss_pred cEEEEEeCCCcEEEEECCCCc-eeeEeec--------CCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCe------EE
Q 003279 651 DLLCSCDNNSEIRYWSINNGS-CAGVFKC--------QSGATQMRFQPRL-GRILAAAIENYISILDVETQV------CR 714 (834)
Q Consensus 651 ~llasgs~Dg~I~lwDl~s~~-~i~~~~~--------~~~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t~~------~~ 714 (834)
.++ ++ .|-.|.+|+++--. +...... ..-|++..|+|.. ..+...+..|.|++.|++... ..
T Consensus 186 t~l-Sa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 186 TLL-SA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred eee-ec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 555 44 48899999987432 2222111 1237888999964 556677778999999998321 11
Q ss_pred E----------EEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCC------------Cce---E
Q 003279 715 L----------KLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG------------NKF---H 769 (834)
Q Consensus 715 ~----------~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~------------~~I---~ 769 (834)
. -+.+-...|..+.|+++|+|+++-+--+|+|||++... .++.++..|. ..| .
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k--~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK--NPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc--CCceeechHHHHHHHHHhhhhccceeeeE
Confidence 1 11223356788999999999998888899999998764 4555554332 122 4
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 770 SCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 770 svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
.+.|+.|...+++|+..+..-||-.
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEEecCCcccccccccccceeeecc
Confidence 5788888888888887776666653
No 276
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.12 E-value=5.7e-08 Score=122.03 Aligned_cols=238 Identities=12% Similarity=0.147 Sum_probs=160.7
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeEEEEecc--C------------CCCeEEEEECCCCCEEEEEeC-CCeEE
Q 003279 556 ESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEE--H------------TQWITDVRFSPSLSRLATSSA-DRTVR 619 (834)
Q Consensus 556 ~sl~fSpd-g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~--h------------~~~I~~l~fspdg~~Latgs~-Dg~I~ 619 (834)
..++++++ +.++++-+.++.|++||... ..+..+.+ . -.....|++++++..|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35788874 55666667788999999764 44444322 1 123578999998877666554 56899
Q ss_pred EEecCCCCceeeeeccC-----------------CCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec----
Q 003279 620 VWDTENPDYSLRTFTGH-----------------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---- 678 (834)
Q Consensus 620 IWDl~s~~~~i~~~~~h-----------------~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~---- 678 (834)
++|+.++. +.++.+. -....+++|+|++..++++.+.++.|++||..++........
T Consensus 650 ~id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 99987643 3333210 123468999997677888888889999999987754321100
Q ss_pred -----------CCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeC-------------C--------CCCEE
Q 003279 679 -----------QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG-------------H--------KNQVH 725 (834)
Q Consensus 679 -----------~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~-------------h--------~~~I~ 725 (834)
-.....++++|+++.|+++.. ++.|++||+.++.......+ + -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 123456999999986666655 58999999987643221100 0 11245
Q ss_pred EEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-------------cCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003279 726 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-------------CTGNKFHSCVFHPTFPSLLVIGCYETLEL 791 (834)
Q Consensus 726 sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~-------------~~~~~I~svafspdg~~L~sgs~dg~I~I 791 (834)
+++++++|.++++.. ++.|++||..++. ...... ..-.....++++++|..+++-+.++.|++
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~---v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKR---VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCe---EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 889999998777766 8899999998762 221111 11235678999999987777777889999
Q ss_pred EECCCCeE
Q 003279 792 WNMTENKT 799 (834)
Q Consensus 792 wdl~~~~~ 799 (834)
||+.+++.
T Consensus 885 id~~~~~~ 892 (1057)
T PLN02919 885 LDLNKGEA 892 (1057)
T ss_pred EECCCCcc
Confidence 99988764
No 277
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=3.1e-08 Score=112.84 Aligned_cols=201 Identities=10% Similarity=0.041 Sum_probs=136.5
Q ss_pred CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCc-EEEEEeC--CCcEEEEECCCCceeeEeecCCCeeEEEEecCCC
Q 003279 616 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-LLCSCDN--NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 692 (834)
Q Consensus 616 g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~-llasgs~--Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~ 692 (834)
..|.+-|.+... .+.+.... .+....|+|+++. ++++... +..|+++|+.+++........+......|+|||+
T Consensus 169 ~~l~~~d~dg~~--~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTY--QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCc--eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCC
Confidence 356665665432 33333333 7888999999986 4433332 3579999999888776665556667788999999
Q ss_pred EEEEEEc---CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC----eEEEEEcCCCCCceeEEEeecCC
Q 003279 693 RILAAAI---ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE----LVRVWSIGSGSKGECIHELSCTG 765 (834)
Q Consensus 693 ~ll~~s~---dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg----~I~IwDl~s~~~~~~i~~~~~~~ 765 (834)
.++.... +..|+++|+.++... .+..+........|+|||+.|+..++. .|+++|+.++.... + ....
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r-l---t~~g 320 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ-V---VFHG 320 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe-C---ccCC
Confidence 8876654 357999999887643 344344434567899999988887733 78999998764311 1 1111
Q ss_pred CceEEEEEeCCCCEEEEEEcC---------CeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecC
Q 003279 766 NKFHSCVFHPTFPSLLVIGCY---------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 766 ~~I~svafspdg~~L~sgs~d---------g~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~D 827 (834)
.. ...|+|+|+.|+..+.. ..|++.|+.++....+... .......|+|||+.|+..+.+
T Consensus 321 ~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 321 KN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred Cc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence 11 24899999999887754 2788999998887665543 234468999999987766543
No 278
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=2.5e-08 Score=112.27 Aligned_cols=306 Identities=11% Similarity=0.170 Sum_probs=198.0
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
..+++||+.|+.+++.....+.......+ ......+..-.++.||.+.|.-+.|+.+...|-+...+|.|.||-+-
T Consensus 26 ~gyIAcgG~dGlLKVlKl~t~t~d~~~~g----laa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmly 101 (1189)
T KOG2041|consen 26 SGYIACGGADGLLKVLKLGTDTTDLNKSG----LAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLY 101 (1189)
T ss_pred CCeEEeccccceeEEEEccccCCcccccc----cccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeee
Confidence 37999999999999985444332222221 11223445567899999999999999999999999999999999887
Q ss_pred CCeEEEEe--ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc--------------------------------
Q 003279 583 SFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-------------------------------- 628 (834)
Q Consensus 583 t~~~~~~l--~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~-------------------------------- 628 (834)
.+.-...+ ....+.|.+++|+.||..|+....||.|.|=.++..+.
T Consensus 102 kgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~h 181 (1189)
T KOG2041|consen 102 KGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETH 181 (1189)
T ss_pred cccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEE
Confidence 76544322 23456688999999999998888888776544432110
Q ss_pred ---------------e-e---eeeccCCCCeEEEEEc--------cCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCC
Q 003279 629 ---------------S-L---RTFTGHSTTVMSLDFH--------PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG 681 (834)
Q Consensus 629 ---------------~-i---~~~~~h~~~V~sl~fs--------pdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~ 681 (834)
+ + ..+......|..+.|. |+ .-.|++|..+|.+.+..-.+......+..+-.
T Consensus 182 lydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pd-rP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~ 260 (1189)
T KOG2041|consen 182 LYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPD-RPRLAVCYANGRMQIMRSENDPEPVVVDTGMK 260 (1189)
T ss_pred EecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCC-CCEEEEEEcCceehhhhhcCCCCCeEEecccE
Confidence 0 0 0011112234455553 23 33566777788887776655555555565677
Q ss_pred eeEEEEecCCCEEEEEEcCC---------eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003279 682 ATQMRFQPRLGRILAAAIEN---------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 752 (834)
Q Consensus 682 i~~l~~sp~g~~ll~~s~dg---------~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~ 752 (834)
+..+.|+++|..+++++.+. .|.+|. .-|+.+.+++.....|++++|-..|-.++.+-|+.|++=+++..
T Consensus 261 ~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanIRP~ 339 (1189)
T KOG2041|consen 261 IVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANIRPE 339 (1189)
T ss_pred eecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEEecceEEEEeeccc
Confidence 88999999999999988642 344443 34677788888888999999999999999988999999988765
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcE
Q 003279 753 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCV 830 (834)
Q Consensus 753 ~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I 830 (834)
-..-.+ . ..+.|--.++.+ ..-.|.+||..+.+.. +... ...+++|..+.-.|++-.+||.|
T Consensus 340 ykWgy~---e------~TvVy~y~~~e~----p~y~i~Fwdtk~nek~vK~V~---~~~~~a~~~ehCvL~~~~d~~~i 402 (1189)
T KOG2041|consen 340 YKWGYI---E------ETVVYVYQKEEL----PQYGIMFWDTKTNEKTVKTVT---HFENMAFYREHCVLINRQDDGVI 402 (1189)
T ss_pred ceEEEe---e------eEEEEEEccCCC----cceEEEEEecccChhhhhhhc---ceeehheecccEEEEeccccCCC
Confidence 211111 0 011111111000 0115889998877644 2222 24456666555556665566554
No 279
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.11 E-value=6.7e-08 Score=119.32 Aligned_cols=280 Identities=14% Similarity=0.199 Sum_probs=185.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEE----eCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC-
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLW----CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE- 624 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IW----d~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~- 624 (834)
...+.|.++.|-++..-|+.+..+|.|.++ +..+... .....-...|.+++||||...|+..+.+++|.+.+-.
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 345789999999999999999999999999 5554332 2333445789999999999999999999988876432
Q ss_pred ---------C---CC-ce--------ee-------------------------eeccCCCCeEEEEEccCCCcEEEEEe-
Q 003279 625 ---------N---PD-YS--------LR-------------------------TFTGHSTTVMSLDFHPSKEDLLCSCD- 657 (834)
Q Consensus 625 ---------s---~~-~~--------i~-------------------------~~~~h~~~V~sl~fspdg~~llasgs- 657 (834)
. +. .. -. .+. +.+.-..|+|-.||.+++++.-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEE
Confidence 0 00 00 00 011 3335567899999986655543
Q ss_pred -C---CCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEc---CCeEEEEECCCCeEEEEE----eCCCCCEE
Q 003279 658 -N---NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI---ENYISILDVETQVCRLKL----QGHKNQVH 725 (834)
Q Consensus 658 -~---Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~---dg~I~iwDl~t~~~~~~l----~~h~~~I~ 725 (834)
. -..|+||+-+ |....+... .+--.+++|-|.|+.|++.-. ...|.+|.-+ |.....| ......|.
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~ 308 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVI 308 (928)
T ss_pred cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceee
Confidence 2 2579999977 655444432 233467899999998888776 2356666543 3222222 23456899
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCE-EEEEEcCCeEEEEEC----CCC--
Q 003279 726 SVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPS-LLVIGCYETLELWNM----TEN-- 797 (834)
Q Consensus 726 sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~-~~~I~svafspdg~~-L~sgs~dg~I~Iwdl----~~~-- 797 (834)
.+.|++|+.+|+....+.|.+|-..+.. .....++... ...+..+.|+|.... |.+.+.++.+..+++ ..+
T Consensus 309 ~l~Wn~ds~iLAv~~~~~vqLWt~~NYH-WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~ 387 (928)
T PF04762_consen 309 ELAWNSDSEILAVWLEDRVQLWTRSNYH-WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPG 387 (928)
T ss_pred EEEECCCCCEEEEEecCCceEEEeeCCE-EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCC
Confidence 9999999999999876669999987652 1222333322 233455899997654 555555465544332 111
Q ss_pred --------------eEEE----------------eccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 798 --------------KTLT----------------LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 798 --------------~~~~----------------l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
..+. .......|.+++|++++..+|+-..||.|.+|+
T Consensus 388 ~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 388 SSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred CCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 1110 112356799999999998899999999999874
No 280
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.04 E-value=1.6e-08 Score=104.01 Aligned_cols=242 Identities=12% Similarity=0.106 Sum_probs=164.4
Q ss_pred CCCeEEEEEcC---CCC-EEEEEeCCCcEEEEeCCCCeEEEEeccCC------CCeEEEEECCCCCEEEEEeCCCeEEEE
Q 003279 552 TSKVESCHFSP---DGK-LLATGGHDKKAVLWCTESFTVKSTLEEHT------QWITDVRFSPSLSRLATSSADRTVRVW 621 (834)
Q Consensus 552 ~~~V~sl~fSp---dg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~------~~I~~l~fspdg~~Latgs~Dg~I~IW 621 (834)
+..+..+.|.. +|. .|+-+..+|.|.+|..........+.+-. ....++.|++.+..++++..+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 34466666654 455 56667778999999766544444443221 124578899989999999999999855
Q ss_pred ecCCCCc-eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC-CCceeeE--eecCCCeeEEEEec-CCCEEEE
Q 003279 622 DTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGV--FKCQSGATQMRFQP-RLGRILA 696 (834)
Q Consensus 622 Dl~s~~~-~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~-s~~~i~~--~~~~~~i~~l~~sp-~g~~ll~ 696 (834)
+...... .+..++.|.-+++...|+.....++++|++|+.+..||++ .++.+.. ..+..+|.++.-+| ...+|++
T Consensus 149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T 228 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT 228 (339)
T ss_pred ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence 5543322 2357889999999999998888899999999999999999 3444433 23567888888876 4678999
Q ss_pred EEcCCeEEEEECCC-CeEEEEEeCCCCCEEEEEEcCC--CCEEEEEeCCeEEEEEcCCCCCc--eeEEEeecCCCceEEE
Q 003279 697 AAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTS--GEYLASVSDELVRVWSIGSGSKG--ECIHELSCTGNKFHSC 771 (834)
Q Consensus 697 ~s~dg~I~iwDl~t-~~~~~~l~~h~~~I~sl~~spd--g~~LasgsDg~I~IwDl~s~~~~--~~i~~~~~~~~~I~sv 771 (834)
|+.|..|++||.++ ++++..-. -.+.|..+.++|. +.+|+++--+-++|-++...... ........|..-+..-
T Consensus 229 GsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~ 307 (339)
T KOG0280|consen 229 GSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGG 307 (339)
T ss_pred eccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeecc
Confidence 99999999999995 46655443 4478999999985 34556666444677776654321 1333444555555555
Q ss_pred EEeCCCCEEEEEEc-CCeEE-EEEC
Q 003279 772 VFHPTFPSLLVIGC-YETLE-LWNM 794 (834)
Q Consensus 772 afspdg~~L~sgs~-dg~I~-Iwdl 794 (834)
.|.....+|++++. |..|+ +|-.
T Consensus 308 DWd~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 308 DWDSKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred ccccccceeeeeeccccceeeeeee
Confidence 66444456777654 33433 5543
No 281
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=6.8e-08 Score=110.02 Aligned_cols=211 Identities=15% Similarity=0.180 Sum_probs=154.6
Q ss_pred eeeeEEEEecCCCCCeEEEEEcCC------------CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECC---
Q 003279 540 FTFTEFQLIPASTSKVESCHFSPD------------GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--- 604 (834)
Q Consensus 540 ~~~~~~~~l~gH~~~V~sl~fSpd------------g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fsp--- 604 (834)
..+..+.++.-|...|+.+.|.|- .-+||++...|.|.|||...+..+..+..|.++|.+++|-+
T Consensus 43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd 122 (1062)
T KOG1912|consen 43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARD 122 (1062)
T ss_pred hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccC
Confidence 345668888999999999999872 12578888899999999999999999999999999999977
Q ss_pred CC-CEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-------CceeeEe
Q 003279 605 SL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAGVF 676 (834)
Q Consensus 605 dg-~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s-------~~~i~~~ 676 (834)
+. ..|+.-....+|.+|+..++.. +..+........|+.+.|-...-++.-+..|.+.+.+.-. ++....-
T Consensus 123 ~Srd~LlaIh~ss~lvLwntdtG~k-~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~ 201 (1062)
T KOG1912|consen 123 DSRDVLLAIHGSSTLVLWNTDTGEK-FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT 201 (1062)
T ss_pred cchheeEEecCCcEEEEEEccCCce-eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEe
Confidence 33 4677777788999999999876 4444444566778999997665666666677777666431 1111111
Q ss_pred ecCCC--------------------------eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEc
Q 003279 677 KCQSG--------------------------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 730 (834)
Q Consensus 677 ~~~~~--------------------------i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~s 730 (834)
..++. ...++|+|.-+.++.......+.++|++-..++....-..+.+.-+.|-
T Consensus 202 sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vl 281 (1062)
T KOG1912|consen 202 SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVL 281 (1062)
T ss_pred cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEec
Confidence 11000 1235678888888888899999999999888877776666666667777
Q ss_pred CCC--CEEEEEe-CCeEEEEEcCC
Q 003279 731 TSG--EYLASVS-DELVRVWSIGS 751 (834)
Q Consensus 731 pdg--~~Lasgs-Dg~I~IwDl~s 751 (834)
|++ ..|++.. ||.+.+|-.+.
T Consensus 282 P~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 282 PDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred cCCCcceEEEEecCCeEEEEEeec
Confidence 765 4677777 99888886543
No 282
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.01 E-value=1.4e-07 Score=102.41 Aligned_cols=275 Identities=14% Similarity=0.097 Sum_probs=171.3
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC
Q 003279 549 PASTSKVESCHFSPDGKLLATGGHDK-KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 627 (834)
Q Consensus 549 ~gH~~~V~sl~fSpdg~~Lasgs~Dg-~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~ 627 (834)
-+|.+.|.-..+..+++-++.|..|| .+-|||.++++... +...-+.|.++..+++|++++.+.....|.++|++++.
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 47888899999999999999999999 89999998877654 44566789999999999999999999999999999877
Q ss_pred ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC----cEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeE
Q 003279 628 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYI 703 (834)
Q Consensus 628 ~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg----~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I 703 (834)
. ...-....+-|+.++|+|+++. +|-+--+| .|+++|+..++..........-.+-+|.|++++|..-+.-.
T Consensus 435 v-~~idkS~~~lItdf~~~~nsr~-iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~Rs-- 510 (668)
T COG4946 435 V-RLIDKSEYGLITDFDWHPNSRW-IAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARS-- 510 (668)
T ss_pred e-eEecccccceeEEEEEcCCcee-EEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEeccc--
Confidence 4 2333445678999999999774 44443344 79999999988877766666677889999999988776411
Q ss_pred EEEECCCCeEEEE--EeCCCCCEEEEE----EcCCCCEEEEE--eCCeEEEEEcCCCCCcee-----EEEe-ecCCCceE
Q 003279 704 SILDVETQVCRLK--LQGHKNQVHSVC----WNTSGEYLASV--SDELVRVWSIGSGSKGEC-----IHEL-SCTGNKFH 769 (834)
Q Consensus 704 ~iwDl~t~~~~~~--l~~h~~~I~sl~----~spdg~~Lasg--sDg~I~IwDl~s~~~~~~-----i~~~-~~~~~~I~ 769 (834)
.|......+.. +..+..+...+- .+|-....-.. .++.+-+=++......-. ...+ ....+.|.
T Consensus 511 --LdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee~dY~sI~~lk~~kil 588 (668)
T COG4946 511 --LDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEEGDYRSIAGLKNGKIL 588 (668)
T ss_pred --cCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhcccccccccCccceeEeeecCCCeEE
Confidence 11111111111 111211111110 11111111111 123332222221110000 0001 11111122
Q ss_pred EEEEeCCCCE---EEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 770 SCVFHPTFPS---LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 770 svafspdg~~---L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
-..+.-.|.+ +...-..|.|.+||+++.+... -...++++..|+|++.|.. -.||.++++|
T Consensus 589 lfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e---~k~nvss~rlS~D~s~ilv-k~d~kl~~f~ 652 (668)
T COG4946 589 LFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEE---YKDNVSSFRLSSDGSKILV-KLDGKLRLFD 652 (668)
T ss_pred EEEeeccchhhhhhcCCCccceEEEEecchhhHHH---HhcccceEEEcCCCCEEEE-EeCCeEEEEe
Confidence 2222222211 1112335688899988876543 3457899999999998888 7899999875
No 283
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.98 E-value=1.3e-06 Score=92.55 Aligned_cols=217 Identities=7% Similarity=0.020 Sum_probs=143.6
Q ss_pred EEEEECC-CCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEc-cCCCcEEEEEeCCCcEEEEECCCCceeeE
Q 003279 598 TDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGV 675 (834)
Q Consensus 598 ~~l~fsp-dg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fs-pdg~~llasgs~Dg~I~lwDl~s~~~i~~ 675 (834)
.+++|.+ ++.++++-...+.|+.|+..++.... +.... ...+++. ++ ..++ .+.. +.+.++|+.+++....
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--~~~~~--~~G~~~~~~~-g~l~-v~~~-~~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--IDLPG--PNGMAFDRPD-GRLY-VADS-GGIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--EESSS--EEEEEEECTT-SEEE-EEET-TCEEEEETTTTEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--EecCC--CceEEEEccC-CEEE-EEEc-CceEEEecCCCcEEEE
Confidence 3678888 66667776678999999998765322 22222 7777777 55 4444 4443 4566669998876655
Q ss_pred eec------CCCeeEEEEecCCCEEEEEEcC--------CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-
Q 003279 676 FKC------QSGATQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 740 (834)
Q Consensus 676 ~~~------~~~i~~l~~sp~g~~ll~~s~d--------g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs- 740 (834)
... ....+.+++.++|+.+++.... |.|+.++.. ++...... .-...+.|+|+|+++.|+++.
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEET
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeeccc
Confidence 543 2337789999998866655543 568888888 55444443 345678999999999887665
Q ss_pred -CCeEEEEEcCCCCC-c---eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEE
Q 003279 741 -DELVRVWSIGSGSK-G---ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAA 814 (834)
Q Consensus 741 -Dg~I~IwDl~s~~~-~---~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~laf 814 (834)
.+.|..|++..... . ..+..+.........+++..+|+..++....+.|.++|.. ++.+ .+......+++++|
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 77899999874322 1 1222223333357889999999877777778899999988 6655 34433468999999
Q ss_pred e-CCCCEEEEE
Q 003279 815 S-TVNGMVASA 824 (834)
Q Consensus 815 s-pdg~~LaSg 824 (834)
. ++.+.|+..
T Consensus 233 gg~~~~~L~vT 243 (246)
T PF08450_consen 233 GGPDGKTLYVT 243 (246)
T ss_dssp ESTTSSEEEEE
T ss_pred ECCCCCEEEEE
Confidence 5 665555443
No 284
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=2.9e-08 Score=112.99 Aligned_cols=239 Identities=15% Similarity=0.195 Sum_probs=176.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCC------------CEEEEEeCCCeEE
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL------------SRLATSSADRTVR 619 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg------------~~Latgs~Dg~I~ 619 (834)
...-.++.|+|.| +||.|+. ..|.|.|..+.+.+..++.|...|+.+.|.|-. -+||++...|.|.
T Consensus 15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 3336788999887 8888876 578999999999999999999999999998731 2567777889999
Q ss_pred EEecCCCCceeeeeccCCCCeEEEEEcc---CCCcEEEEEeCCCcEEEEECCCCceeeEeecCCC-eeEEEEec-CCCEE
Q 003279 620 VWDTENPDYSLRTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQP-RLGRI 694 (834)
Q Consensus 620 IWDl~s~~~~i~~~~~h~~~V~sl~fsp---dg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~-i~~l~~sp-~g~~l 694 (834)
+||...... +..+..|..+|..++|-+ +.++++++-....+|.+|+..+|+.+..+..... ..|+.+.| +.+++
T Consensus 93 l~d~~~~s~-~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~ 171 (1062)
T KOG1912|consen 93 LVDFVLASV-INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHF 171 (1062)
T ss_pred EEEehhhhh-hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceE
Confidence 999987654 667778889999999976 3445666666678999999999999988876444 55688888 55677
Q ss_pred EEEEcCCeEEEEECCC-------CeEEEEEeCCCC------------C-------------EEEEEEcCCCC-EEEEEeC
Q 003279 695 LAAAIENYISILDVET-------QVCRLKLQGHKN------------Q-------------VHSVCWNTSGE-YLASVSD 741 (834)
Q Consensus 695 l~~s~dg~I~iwDl~t-------~~~~~~l~~h~~------------~-------------I~sl~~spdg~-~LasgsD 741 (834)
.+.+..|.+.+.+.-. ++....-..|.+ . ...++|+|.-+ .++..-.
T Consensus 172 ~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p 251 (1062)
T KOG1912|consen 172 CVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP 251 (1062)
T ss_pred EEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec
Confidence 7777788777776431 222222222222 0 01246677654 4444458
Q ss_pred CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC--CEEEEEEcCCeEEEEECCC
Q 003279 742 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF--PSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 742 g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg--~~L~sgs~dg~I~Iwdl~~ 796 (834)
..+.|+|++-. .++..+....+.+.-+.+-|++ ..|++.-.||.+.||-.+.
T Consensus 252 rellv~dle~~---~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 252 RELLVFDLEYE---CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred cceEEEcchhh---ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 88999999876 6676666666666666776665 5799999999999997654
No 285
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.97 E-value=2.1e-06 Score=90.81 Aligned_cols=217 Identities=14% Similarity=0.173 Sum_probs=146.2
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEEC-CCCCEEEEEeCCCeEEEEecCCCCcee-eee
Q 003279 557 SCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS-PSLSRLATSSADRTVRVWDTENPDYSL-RTF 633 (834)
Q Consensus 557 sl~fSp-dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fs-pdg~~Latgs~Dg~I~IWDl~s~~~~i-~~~ 633 (834)
+++|.+ ++.++++--..+.|+.|+..++.....- ... ...+++. +++ .|+.+..++ +.++|+.+++... ...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID-LPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-SSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe-cCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 678998 6777777767899999999887665322 222 6677777 564 555555554 5556988765322 111
Q ss_pred c--c-CCCCeEEEEEccCCCcEEEEEeCC--------CcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc-CC
Q 003279 634 T--G-HSTTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN 701 (834)
Q Consensus 634 ~--~-h~~~V~sl~fspdg~~llasgs~D--------g~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg 701 (834)
. . .....+++++.++|. +.++.... |.|..++.. ++.......-.....++|+|+++.|+++.. .+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccc
Confidence 1 1 346788999999987 55454432 568888888 666666655567889999999998876654 68
Q ss_pred eEEEEECCC--C-----eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003279 702 YISILDVET--Q-----VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 773 (834)
Q Consensus 702 ~I~iwDl~t--~-----~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svaf 773 (834)
.|..||+.. . +....+....+....++++.+|+++++.. .+.|.++|.. + +.+..+......+++++|
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G---~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G---KLLREIELPVPRPTNCAF 232 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S---CEEEEEE-SSSSEEEEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c---cEEEEEcCCCCCEEEEEE
Confidence 899999863 2 11222232233478999999999888776 8899999987 5 566666666568999999
Q ss_pred e-CCCCEEEEEE
Q 003279 774 H-PTFPSLLVIG 784 (834)
Q Consensus 774 s-pdg~~L~sgs 784 (834)
. ++.+.|++.+
T Consensus 233 gg~~~~~L~vTt 244 (246)
T PF08450_consen 233 GGPDGKTLYVTT 244 (246)
T ss_dssp ESTTSSEEEEEE
T ss_pred ECCCCCEEEEEe
Confidence 4 6767777654
No 286
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.95 E-value=3.4e-09 Score=129.30 Aligned_cols=209 Identities=16% Similarity=0.239 Sum_probs=163.4
Q ss_pred CEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec--CCCeeE
Q 003279 607 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQ 684 (834)
Q Consensus 607 ~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~--~~~i~~ 684 (834)
..+.....++...-|..+... ..+..+-..|.++.-+|...+++ +|+.||.|++|....+..+..+.. ...++.
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~---~~~k~~v~~v~r~~sHp~~~~Yl-tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr 2256 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGAS---VMIKHPVENVRRMTSHPSDPYYL-TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTR 2256 (2439)
T ss_pred ccCCcccCCccccceecccce---eEeecccCceeeecCCCCCceEE-ecCCCceEEEEeccCCCeEEEeeccCcchhhh
Confidence 334444445555555554332 23334556788888888877555 999999999999999988887775 466888
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCceeEEE
Q 003279 685 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHE 760 (834)
Q Consensus 685 l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs----Dg~I~IwDl~s~~~~~~i~~ 760 (834)
+.|+..|+.+.++..||.+.+|.+. .++....+.|....+.+.|-. ..+++.+ ++.+.+||.--.....+++
T Consensus 2257 ~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~- 2332 (2439)
T KOG1064|consen 2257 SRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH- 2332 (2439)
T ss_pred hhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee-
Confidence 9999999999999999999999988 667777788999899888875 4555543 5589999987655445666
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 761 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 761 ~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.+|...++++++.|....|++|+.+|.|++||++-.+.+ .+.. ++ ...++++|+..|.|+||+
T Consensus 2333 -~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2333 -TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred -eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEE
Confidence 889999999999999999999999999999999887665 2222 44 567899999999999995
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.95 E-value=9.9e-08 Score=97.08 Aligned_cols=248 Identities=9% Similarity=0.014 Sum_probs=165.0
Q ss_pred CCcEEEEeCCCCe--EEEEeccCCCCeEEEEECC-----CCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEE
Q 003279 573 DKKAVLWCTESFT--VKSTLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 645 (834)
Q Consensus 573 Dg~I~IWd~~t~~--~~~~l~~h~~~I~~l~fsp-----dg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~f 645 (834)
...|.+|++.+.. .+... ..+.|.| ...+||.|+..|...+|...+..........|...|+-+.-
T Consensus 51 t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r 123 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR 123 (344)
T ss_pred eeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence 3456777765433 22222 2344444 34589999999999999999776655555556554443322
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-eEE-E-EEeCCC
Q 003279 646 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQ-VCR-L-KLQGHK 721 (834)
Q Consensus 646 spdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~-~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~-~~~-~-~l~~h~ 721 (834)
.-+...-+..++.|.++++++++-+......... -...++.++++++++++.+....|..|.+... +.+ . ......
T Consensus 124 ~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~ 203 (344)
T KOG4532|consen 124 YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS 203 (344)
T ss_pred hcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC
Confidence 2222333456788999999988754433322221 33788999999999999999999999988754 222 2 223344
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCce--eEEEeecCCCceEEEEEeCCCC--EEEEEEcCCeEEEEECCC
Q 003279 722 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE--CIHELSCTGNKFHSCVFHPTFP--SLLVIGCYETLELWNMTE 796 (834)
Q Consensus 722 ~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~--~i~~~~~~~~~I~svafspdg~--~L~sgs~dg~I~Iwdl~~ 796 (834)
+.-.+..|+.....+|++. ||++.|||++...... ....-..|.+.+..|.|++.|. .|+..-.-+.+.+.|+++
T Consensus 204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence 5557889999999999999 9999999999764211 1222345789999999998774 455655667899999998
Q ss_pred CeEE--------EeccCCC-CeEEEEEeCCCCEEEEEecC
Q 003279 797 NKTL--------TLSAHDK-LVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 797 ~~~~--------~l~~h~~-~V~~lafspdg~~LaSgs~D 827 (834)
++-. ....|.. .|..-.|+.++..+.+.+.+
T Consensus 284 ~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 284 YVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred CceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 7644 1223333 37778888777665555443
No 288
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.93 E-value=4.1e-09 Score=128.61 Aligned_cols=190 Identities=15% Similarity=0.305 Sum_probs=155.0
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC
Q 003279 547 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 625 (834)
Q Consensus 547 ~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s 625 (834)
.++.|-..|.++.-+|...+.+||+.||.|++|....+..+..+. .....|+.+.|+..|..+..+..||.+.+|.+..
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p 2282 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP 2282 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC
Confidence 344555678888889988899999999999999998888776664 2337899999999999999999999999999983
Q ss_pred CCceeeeeccCCCCeEEEEEccCCCcEEEEEe---CCCcEEEEECCCC---ceeeEeecCCCeeEEEEecCCCEEEEEEc
Q 003279 626 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNG---SCAGVFKCQSGATQMRFQPRLGRILAAAI 699 (834)
Q Consensus 626 ~~~~i~~~~~h~~~V~sl~fspdg~~llasgs---~Dg~I~lwDl~s~---~~i~~~~~~~~i~~l~~sp~g~~ll~~s~ 699 (834)
.+......|+....++.|-. .++++++ .++.+.+||..-. .++. ..|.++++++++.|....|++|+.
T Consensus 2283 --k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2283 --KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred --cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCC
Confidence 45777888999999999874 3565653 5789999997532 2333 446788999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003279 700 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 752 (834)
Q Consensus 700 dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 752 (834)
+|.|++||++..+.++.+.. ++ ...++++++ .|.|+||++...
T Consensus 2357 ~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred cCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence 99999999998877766553 44 566788888 999999999876
No 289
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=8.1e-09 Score=111.30 Aligned_cols=277 Identities=15% Similarity=0.124 Sum_probs=182.8
Q ss_pred cCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEE
Q 003279 500 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVL 578 (834)
Q Consensus 500 ~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~-Dg~I~I 578 (834)
.....|+.+++.|+.++.|.-..- .-...+..++.|-+.|.+++.+-||.++.+++. |..+++
T Consensus 17 ~tka~fiiqASlDGh~KFWkKs~i----------------sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kv 80 (558)
T KOG0882|consen 17 PTKAKFIIQASLDGHKKFWKKSRI----------------SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKV 80 (558)
T ss_pred eehhheEEeeecchhhhhcCCCCc----------------cceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeE
Confidence 345578999999999999933221 122346677899999999999999999999777 999999
Q ss_pred EeCCCCeEEEEec--cCCCCeEEEEECCC-CC-EEEEE-eCCCeEEEEecCCCCcee-eeeccCCCCeEEEEEccCCCcE
Q 003279 579 WCTESFTVKSTLE--EHTQWITDVRFSPS-LS-RLATS-SADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDL 652 (834)
Q Consensus 579 Wd~~t~~~~~~l~--~h~~~I~~l~fspd-g~-~Latg-s~Dg~I~IWDl~s~~~~i-~~~~~h~~~V~sl~fspdg~~l 652 (834)
+|+++...+.-++ .-.+.+.++ .++. -. .|+++ -.++.|.|+|-....+.. ..-.-|..+|.++.+.+.++ .
T Consensus 81 fDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-s 158 (558)
T KOG0882|consen 81 FDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-S 158 (558)
T ss_pred EEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc-c
Confidence 9999876653332 222322222 2222 11 33333 357899999987655333 34455899999999999977 4
Q ss_pred EEEEeCCCcEEEEECCC------CceeeEe----------ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003279 653 LCSCDNNSEIRYWSINN------GSCAGVF----------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 716 (834)
Q Consensus 653 lasgs~Dg~I~lwDl~s------~~~i~~~----------~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~ 716 (834)
+++....|.|..|..+. .+....+ +......++.|+|++..+.+.+.|..|++++.++++.+..
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence 55888889999999873 2222222 2245578999999999999999999999999999988877
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003279 717 LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 717 l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~-~~~I~svafspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
+..-...- .+-+.. .+.+-++.-+.....-.++..+ ......++|...+++|+.++--| |+++++.
T Consensus 239 iDE~~t~~---~~q~ks---------~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~ 305 (558)
T KOG0882|consen 239 IDEVLTDA---QYQPKS---------PYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLD 305 (558)
T ss_pred hhccchhh---hhcccc---------ccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEee
Confidence 75422111 111111 1111111111111111122222 23346678999999999888765 8899999
Q ss_pred CCeEEEeccCCC
Q 003279 796 ENKTLTLSAHDK 807 (834)
Q Consensus 796 ~~~~~~l~~h~~ 807 (834)
++.+.++.+...
T Consensus 306 tn~v~ri~gk~e 317 (558)
T KOG0882|consen 306 TNTVVRILGKDE 317 (558)
T ss_pred cCeEEEEeccch
Confidence 988876655443
No 290
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.92 E-value=8.2e-07 Score=92.89 Aligned_cols=216 Identities=12% Similarity=0.001 Sum_probs=138.3
Q ss_pred CCcEEEEeCCCCeEEEEeccC--CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCC
Q 003279 573 DKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 650 (834)
Q Consensus 573 Dg~I~IWd~~t~~~~~~l~~h--~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~ 650 (834)
+|.|..||..+++.+....-- .....+. ..+++..+++++.++.|+.||..+++.....-. ...+...... .+.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~~~~~-~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPISGAPVV-DGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGGSGEEE-ETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec--cccccceeee-ccc
Confidence 689999999999999777431 1222211 223567788889999999999998875333222 2221111122 223
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEe-ecCC----CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCC--
Q 003279 651 DLLCSCDNNSEIRYWSINNGSCAGVF-KCQS----GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-- 723 (834)
Q Consensus 651 ~llasgs~Dg~I~lwDl~s~~~i~~~-~~~~----~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~-- 723 (834)
.+ +.++.++.|+.+|..+|+.+..+ .... ..........++.++++..++.|..+|+++|+.+.........
T Consensus 78 ~v-~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 78 RV-YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS 156 (238)
T ss_dssp EE-EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred cc-ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence 34 45557889999999999999884 3221 1223333334788999999999999999999998888764422
Q ss_pred --------EEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 724 --------VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 724 --------I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
+.+-....++ .++.+. ++.+..+|+.++ +.+.... ...+.. .....+..|++++.++.|.+||+
T Consensus 157 ~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg---~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 157 SPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATG---EKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp --EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTT---EEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEET
T ss_pred cceeeecccccceEEECC-EEEEEcCCCeEEEEECCCC---CEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEEC
Confidence 1222233345 555555 775444499998 4333222 222222 24577788888889999999999
Q ss_pred CCCeEE
Q 003279 795 TENKTL 800 (834)
Q Consensus 795 ~~~~~~ 800 (834)
++++.+
T Consensus 230 ~tG~~~ 235 (238)
T PF13360_consen 230 KTGKVV 235 (238)
T ss_dssp TTTEEE
T ss_pred CCCCEE
Confidence 999875
No 291
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.91 E-value=9.9e-07 Score=109.14 Aligned_cols=275 Identities=11% Similarity=0.143 Sum_probs=175.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCC----cEEEEeCCCC---eEEEEec-----cCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 003279 554 KVESCHFSPDGKLLATGGHDK----KAVLWCTESF---TVKSTLE-----EHTQWITDVRFSPSLSRLATSSADRTVRVW 621 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg----~I~IWd~~t~---~~~~~l~-----~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 621 (834)
.+...+|.+....+.++.... .|.+...... +.+..+. ...+.|.++.|.++...++.+..+|.|.++
T Consensus 23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~ 102 (928)
T PF04762_consen 23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILV 102 (928)
T ss_pred ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEE
Confidence 466777777655443333222 2333322221 2333332 345679999999999999999999999999
Q ss_pred ----ecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC---------------CCcee--------e
Q 003279 622 ----DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---------------NGSCA--------G 674 (834)
Q Consensus 622 ----Dl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~---------------s~~~i--------~ 674 (834)
+..+.. +.....-...|.+++|+||++ +++..+.++.|.+.+-. ..+.+ .
T Consensus 103 ~~~~~~~~~~--~E~VG~vd~GI~a~~WSPD~E-lla~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeT 179 (928)
T PF04762_consen 103 REDPDPDEDE--IEIVGSVDSGILAASWSPDEE-LLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKET 179 (928)
T ss_pred EccCCCCCce--eEEEEEEcCcEEEEEECCCcC-EEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccC
Confidence 555433 344444567899999999987 45555557777665321 00000 0
Q ss_pred Ee-------------------------ecCCCeeEEEEecCCCEEEEEEc---C---CeEEEEECCCCeEEEEEeCCCCC
Q 003279 675 VF-------------------------KCQSGATQMRFQPRLGRILAAAI---E---NYISILDVETQVCRLKLQGHKNQ 723 (834)
Q Consensus 675 ~~-------------------------~~~~~i~~l~~sp~g~~ll~~s~---d---g~I~iwDl~t~~~~~~l~~h~~~ 723 (834)
.| .....-..++|-.||.+|++.+. . ..|+||+-+ |....+-+.-.+-
T Consensus 180 QF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gL 258 (928)
T PF04762_consen 180 QFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGL 258 (928)
T ss_pred ccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCc
Confidence 00 01224567889999999998886 2 479999876 5544444433344
Q ss_pred EEEEEEcCCCCEEEEEe--C--CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeE
Q 003279 724 VHSVCWNTSGEYLASVS--D--ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT 799 (834)
Q Consensus 724 I~sl~~spdg~~Lasgs--D--g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~ 799 (834)
-.+++|.|.|.+||+.. . ..|.+|.-+.-...+....+......|..+.|++++..|++...| .|.+|-..+...
T Consensus 259 e~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYHW 337 (928)
T PF04762_consen 259 EGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYHW 337 (928)
T ss_pred cCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC-CceEEEeeCCEE
Confidence 45789999999999887 2 267777654433333333333456789999999999998887755 499999988764
Q ss_pred E---Eec-cCCCCeEEEEEeCCCC-EEEEEecCCcEEEe
Q 003279 800 L---TLS-AHDKLVSSLAASTVNG-MVASASHDKCVKIW 833 (834)
Q Consensus 800 ~---~l~-~h~~~V~~lafspdg~-~LaSgs~DG~I~IW 833 (834)
. .+. .....+..+.|+|... .|...+.+|.+.++
T Consensus 338 YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~ 376 (928)
T PF04762_consen 338 YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIY 376 (928)
T ss_pred EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEE
Confidence 3 222 2334455699999654 46666665666543
No 292
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.90 E-value=9.4e-07 Score=100.33 Aligned_cols=255 Identities=11% Similarity=0.011 Sum_probs=156.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCC----C
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST----T 639 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~----~ 639 (834)
+..|+.++.++.++.+|.++|+.+............... .+..++.++.++.|..+|..+++........... .
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 456778888999999999999988776543321111222 2446777888999999999988753332221100 0
Q ss_pred eEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCC--------eeEEEEec--CCCEEEEEEcCCeEEEEECC
Q 003279 640 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--------ATQMRFQP--RLGRILAAAIENYISILDVE 709 (834)
Q Consensus 640 V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~--------i~~l~~sp--~g~~ll~~s~dg~I~iwDl~ 709 (834)
..+.... +. .++.++.++.+..+|..+++.+..+..... ...+..+| .++.+++++.++.+..+|..
T Consensus 198 ~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 198 ESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred CCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence 0111111 22 344567789999999999988776543211 01111122 35678888889999999999
Q ss_pred CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEEcCC
Q 003279 710 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCYE 787 (834)
Q Consensus 710 t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-~~~I~svafspdg~~L~sgs~dg 787 (834)
+++.+...... ....+.. ++..|+.++ ++.+..+|..+++ .+-..... .....+..+ .+..|++++.+|
T Consensus 275 tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G 345 (394)
T PRK11138 275 SGQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGV---ELWSQSDLLHRLLTAPVL--YNGYLVVGDSEG 345 (394)
T ss_pred CCCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCc---EEEcccccCCCcccCCEE--ECCEEEEEeCCC
Confidence 99877655321 1112222 344455555 9999999998873 33222211 111222222 245788999999
Q ss_pred eEEEEECCCCeEE-EeccCCCCeE-EEEEeCCCCEEEEEecCCcEEEeC
Q 003279 788 TLELWNMTENKTL-TLSAHDKLVS-SLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 788 ~I~Iwdl~~~~~~-~l~~h~~~V~-~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.|+++|..+++.+ ........+. ...+. +..|+.++.||.|+.++
T Consensus 346 ~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~--~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 346 YLHWINREDGRFVAQQKVDSSGFLSEPVVA--DDKLLIQARDGTVYAIT 392 (394)
T ss_pred EEEEEECCCCCEEEEEEcCCCcceeCCEEE--CCEEEEEeCCceEEEEe
Confidence 9999999999987 3322222232 22332 45788889999988764
No 293
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.88 E-value=6.8e-09 Score=117.24 Aligned_cols=207 Identities=20% Similarity=0.300 Sum_probs=153.9
Q ss_pred EEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCe-EEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 545 FQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~IWd~~t~~-~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
...+.||+..|+.+.|.|.. ..|++++.|..|..||+.+.. .+..+..-......|+|+.....+++.+....|+|||
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd 186 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWD 186 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEe
Confidence 34678999999999999954 479999999999999998754 3444444445567899998666666677888999999
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc--eeeEeecCCCeeEEEEecCCCEEEEEEc-
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKCQSGATQMRFQPRLGRILAAAI- 699 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~--~i~~~~~~~~i~~l~~sp~g~~ll~~s~- 699 (834)
++.+..++..+++|...|+.++|.......+.+++.|++|++||..... ..+......++..-++.|-|.-.++--.
T Consensus 187 ~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~ 266 (1081)
T KOG0309|consen 187 LRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMV 266 (1081)
T ss_pred ccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecccc
Confidence 9999989999999999999999987666677799999999999987643 3344445666777777775443322222
Q ss_pred -CCeEEEE---------ECCC-CeEEEEEeCCCCCEEEEEEcCCC----------CEEEEEe-CCeEEEEEcCC
Q 003279 700 -ENYISIL---------DVET-QVCRLKLQGHKNQVHSVCWNTSG----------EYLASVS-DELVRVWSIGS 751 (834)
Q Consensus 700 -dg~I~iw---------Dl~t-~~~~~~l~~h~~~I~sl~~spdg----------~~Lasgs-Dg~I~IwDl~s 751 (834)
++.+.++ +..+ ..+++.|.||.+.|..+-|-..+ -.|++-+ |.++++|-+.+
T Consensus 267 G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 267 GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 2233333 3333 36889999999988777664321 2567777 99999998865
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.84 E-value=5e-08 Score=104.52 Aligned_cols=163 Identities=17% Similarity=0.204 Sum_probs=113.5
Q ss_pred cCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003279 500 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 579 (834)
Q Consensus 500 ~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IW 579 (834)
.+..++++++..+....+|+-..... +..+.....+......|+.+..+......-.++....+.+|
T Consensus 71 s~~~~llAv~~~~K~~~~f~~~~~~~-------------~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~ 137 (390)
T KOG3914|consen 71 SDSGRLVAVATSSKQRAVFDYRENPK-------------GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDIL 137 (390)
T ss_pred CCCceEEEEEeCCCceEEEEEecCCC-------------cceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeee
Confidence 44557888888877776665444332 11122223333333344444444333333334455566667
Q ss_pred eCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC
Q 003279 580 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 659 (834)
Q Consensus 580 d~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D 659 (834)
....+..... -+|-..+++|+|+||+++|+|+..|..|+|-.+......-....||...|..++..++. .|++++.|
T Consensus 138 s~~~~~~~~~-lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~--~LlS~sGD 214 (390)
T KOG3914|consen 138 SADSGRCEPI-LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY--LLLSGSGD 214 (390)
T ss_pred cccccCcchh-hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--eeeecCCC
Confidence 6666555544 48999999999999999999999999999998876554345567899999999998763 57799999
Q ss_pred CcEEEEECCCCceeeEeec
Q 003279 660 SEIRYWSINNGSCAGVFKC 678 (834)
Q Consensus 660 g~I~lwDl~s~~~i~~~~~ 678 (834)
++|++||+.+|+++.++..
T Consensus 215 ~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 215 KTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred CcEEEEecccCCcccccch
Confidence 9999999999999877654
No 295
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=1.4e-08 Score=111.22 Aligned_cols=206 Identities=14% Similarity=0.264 Sum_probs=146.8
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC------ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC
Q 003279 587 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 660 (834)
Q Consensus 587 ~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~------~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg 660 (834)
+..+.+|...|..++-..+.+.+++++.|++|++|.++... .+..++..|..+|.++.|..+.+ .+++| ||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeeec--cC
Confidence 35678999999999888888899999999999999987532 24567889999999999987744 45455 89
Q ss_pred cEEEEECCCCceeeEee---cCCCeeEEEEec--CCCEEEEE-EcCCeEEEEECCCCeEEEEEe-----CCCCCEEEEEE
Q 003279 661 EIRYWSINNGSCAGVFK---CQSGATQMRFQP--RLGRILAA-AIENYISILDVETQVCRLKLQ-----GHKNQVHSVCW 729 (834)
Q Consensus 661 ~I~lwDl~s~~~i~~~~---~~~~i~~l~~sp--~g~~ll~~-s~dg~I~iwDl~t~~~~~~l~-----~h~~~I~sl~~ 729 (834)
.|.+||.--+..+.... .++.+..+...+ +...++++ +.+.+|+++|.+..+-+..++ +....+.+++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 99999987776655332 123344444434 33344444 457899999999876555543 34456889999
Q ss_pred cCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE-EECCCCeE
Q 003279 730 NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL-WNMTENKT 799 (834)
Q Consensus 730 spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~I-wdl~~~~~ 799 (834)
.+.|++++++- .|+|.+.|.+++ +.+.....-......++ .|....++....|.++.+ |...++..
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G---~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgim 952 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNG---KVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIM 952 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCC---ceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCee
Confidence 99999999887 999999999998 55554443332222222 344556777777888888 87666543
No 296
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=2.8e-09 Score=122.10 Aligned_cols=265 Identities=14% Similarity=0.184 Sum_probs=185.5
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC--eE
Q 003279 541 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TV 618 (834)
Q Consensus 541 ~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg--~I 618 (834)
.|+.+++|+.|+...+|++|+-+.++|++|+..|.|++|++.+|........|...|+-+.-+.||..+++.+.-. -.
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 4567788999999999999999999999999999999999999999999999999999999999999887766543 47
Q ss_pred EEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-----CCCeeEEEEecCCCE
Q 003279 619 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRLGR 693 (834)
Q Consensus 619 ~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-----~~~i~~l~~sp~g~~ 693 (834)
.+|++.+......+|. .-.++.|+..... -+.|.......+||+.++....++-. ...-.+..|+|+...
T Consensus 1170 aLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~-r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD----EDKAVKFSNSLQF-RALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHhccccccCcccccc----ccceeehhhhHHH-HHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 8999986444444443 3456778755332 22344446788999999877665322 223477889998776
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003279 694 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 773 (834)
Q Consensus 694 ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svaf 773 (834)
++-- | .+||++....++.|...... ..-.|+|.|.-++..+ .|||+++. +.++.+..- .-..+.|
T Consensus 1245 Ilnd---G--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS----EIwD~RTF---~lLh~VP~L--dqc~VtF 1309 (1516)
T KOG1832|consen 1245 ILND---G--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS----EIWDMRTF---KLLHSVPSL--DQCAVTF 1309 (1516)
T ss_pred EeeC---c--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec----hhhhhHHH---HHHhcCccc--cceEEEe
Confidence 6533 3 58999998887777654422 2346899998888754 58999987 444443321 2245677
Q ss_pred eCCCCEEEEEEc--C---------------CeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEe
Q 003279 774 HPTFPSLLVIGC--Y---------------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 774 spdg~~L~sgs~--d---------------g~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs 825 (834)
+..|..++..-. | ...+-||....+.+........|..+|-+|...+++.--
T Consensus 1310 NstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1310 NSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred ccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEEe
Confidence 777775544320 0 023344444444444445566777777777777776543
No 297
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.77 E-value=6.4e-06 Score=87.90 Aligned_cols=244 Identities=14% Similarity=0.127 Sum_probs=163.4
Q ss_pred eEEEEEcC-CCCEEEEEeCCCc-EEEEeCCCCeEEEEeccCCCCeE--EEEECCCCCEEEEEeC-----CCeEEEEecCC
Q 003279 555 VESCHFSP-DGKLLATGGHDKK-AVLWCTESFTVKSTLEEHTQWIT--DVRFSPSLSRLATSSA-----DRTVRVWDTEN 625 (834)
Q Consensus 555 V~sl~fSp-dg~~Lasgs~Dg~-I~IWd~~t~~~~~~l~~h~~~I~--~l~fspdg~~Latgs~-----Dg~I~IWDl~s 625 (834)
...++.+| ++..++.+-.-|+ ..+||..+++....+....+.-. .-+|++||++|++.-. .|.|-|||...
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34678888 5667777777665 67899999999887755444322 4689999999998754 47999999995
Q ss_pred CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003279 626 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 705 (834)
Q Consensus 626 ~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~i 705 (834)
.-..+..+..|.-.-..+.+.||++.+++.- |-|.- ..++++ ..|=....+-.+.+
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN---GGI~T-hpd~GR--------------------~kLNl~tM~psL~~ 142 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVAN---GGIET-HPDSGR--------------------AKLNLDTMQPSLVY 142 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEc---CCCcc-CcccCc--------------------eecChhhcCCceEE
Confidence 5556778888887788899999997666442 22210 011111 11223334556677
Q ss_pred EECCCCeEEEE--E--eCCCCCEEEEEEcCCCCEEEEEe-CC-------eEEEEEcCCCCCceeEEE----eecCCCceE
Q 003279 706 LDVETQVCRLK--L--QGHKNQVHSVCWNTSGEYLASVS-DE-------LVRVWSIGSGSKGECIHE----LSCTGNKFH 769 (834)
Q Consensus 706 wDl~t~~~~~~--l--~~h~~~I~sl~~spdg~~Lasgs-Dg-------~I~IwDl~s~~~~~~i~~----~~~~~~~I~ 769 (834)
.|..+++.+.. + ..|...|..+++.++|..++..- .+ .|.+++.... ...+.. ...-...+-
T Consensus 143 ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~g 220 (305)
T PF07433_consen 143 LDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIG 220 (305)
T ss_pred EecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceE
Confidence 77788876665 4 23777899999999999888765 33 3455544331 111111 122347789
Q ss_pred EEEEeCCCCEEEEEEcCC-eEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEec
Q 003279 770 SCVFHPTFPSLLVIGCYE-TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 826 (834)
Q Consensus 770 svafspdg~~L~sgs~dg-~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~ 826 (834)
+|+++.++..+++++--+ .+.+||..+++.+.... -..+..++..+++ +++|.+.
T Consensus 221 SIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~-l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 221 SIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP-LPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred EEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc-cCceeeeeecCCc-eEEeCCC
Confidence 999999999888777655 99999999999885432 2346667766666 5665544
No 298
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.77 E-value=4.2e-06 Score=93.61 Aligned_cols=259 Identities=14% Similarity=0.123 Sum_probs=157.1
Q ss_pred cCCCCEEEEEe---------CCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceee
Q 003279 561 SPDGKLLATGG---------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 631 (834)
Q Consensus 561 Spdg~~Lasgs---------~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~ 631 (834)
|||+++++... ..+.+.|||+++++....... ...+....|+|+|+.|+... ++.|++++..++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 68888877742 246799999999766644433 67789999999999999885 67899999876543222
Q ss_pred eeccC----------------CCCeEEEEEccCCCcEEEEEeCCCcE---------------------------------
Q 003279 632 TFTGH----------------STTVMSLDFHPSKEDLLCSCDNNSEI--------------------------------- 662 (834)
Q Consensus 632 ~~~~h----------------~~~V~sl~fspdg~~llasgs~Dg~I--------------------------------- 662 (834)
+..+. -+.-..+.|+||++.+++.--++..|
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 22220 11235688999998877655444333
Q ss_pred --EEEECCCCceeeEe-e-----cCCCeeEEEEecCCCEEEEEEcCC-----eEEEEECCCCeEEEEEeC-CCCCE---E
Q 003279 663 --RYWSINNGSCAGVF-K-----CQSGATQMRFQPRLGRILAAAIEN-----YISILDVETQVCRLKLQG-HKNQV---H 725 (834)
Q Consensus 663 --~lwDl~s~~~i~~~-~-----~~~~i~~l~~sp~g~~ll~~s~dg-----~I~iwDl~t~~~~~~l~~-h~~~I---~ 725 (834)
.|+|+.+++....- . ...-+..+.|.+++..|++.-.+. .+.++|..++.+...+.. ....| .
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 33444444332111 1 122367788999888555544432 577788887644333322 33333 2
Q ss_pred EEEEc-CCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEE-EEEeCCCCEEEEEEcC-----CeEEEEEC
Q 003279 726 SVCWN-TSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCY-----ETLELWNM 794 (834)
Q Consensus 726 sl~~s-pdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~s-vafspdg~~L~sgs~d-----g~I~Iwdl 794 (834)
.+.|. +++..++..+ +| .|++++...+ ....+....-.|.. +.+++++..|+..+.. ..|+..++
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~----~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~ 314 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGG----KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL 314 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSS----EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEccccc----ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence 55554 6665554444 77 6777777665 23455555566644 6789998877765553 26888888
Q ss_pred C-CCeEEEeccCCCCeEEEEEeCCCCEEEEEe
Q 003279 795 T-ENKTLTLSAHDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 795 ~-~~~~~~l~~h~~~V~~lafspdg~~LaSgs 825 (834)
. .+....+....+.-..+.|||++++++..+
T Consensus 315 ~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 315 DSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 8 777777765555447999999999877543
No 299
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.76 E-value=2.1e-06 Score=97.52 Aligned_cols=255 Identities=9% Similarity=0.058 Sum_probs=152.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCC----------CeE-EEEECCCCCEEEEEeCCCeEEEEecCCCCceeee
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ----------WIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~----------~I~-~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~ 632 (834)
+..|++++.++.|.-+|.++|+.+........ .+. .+.. ++..++.++.++.++.+|..+++...+.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 55777788889999999999988866542220 000 1111 3557778889999999999988753332
Q ss_pred eccCCCCeEE-EEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEE--EEec--CCCEEEEEEcCCeEEEEE
Q 003279 633 FTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQM--RFQP--RLGRILAAAIENYISILD 707 (834)
Q Consensus 633 ~~~h~~~V~s-l~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l--~~sp--~g~~ll~~s~dg~I~iwD 707 (834)
... ..+.+ .... + . .++.+..++.|..+|.++|+.+..+....+...+ ..+| .++.+++++.++.+..+|
T Consensus 147 -~~~-~~~~ssP~v~-~-~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d 221 (394)
T PRK11138 147 -KVA-GEALSRPVVS-D-G-LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVL 221 (394)
T ss_pred -cCC-CceecCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEE
Confidence 222 22222 1222 2 3 4446777899999999999999887653221100 0011 235678888899999999
Q ss_pred CCCCeEEEEEeCCCC-------CEEEEEEcC---CCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003279 708 VETQVCRLKLQGHKN-------QVHSVCWNT---SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 777 (834)
Q Consensus 708 l~t~~~~~~l~~h~~-------~I~sl~~sp---dg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg 777 (834)
..+++.+........ ....+..+| ++.+++++.++.+..+|..+++ .+-.... .....+. ..+
T Consensus 222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~--~~~~~~~--~~~ 294 (394)
T PRK11138 222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ---IVWKREY--GSVNDFA--VDG 294 (394)
T ss_pred ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC---EEEeecC--CCccCcE--EEC
Confidence 999987665431110 011111122 3444444449999999999883 3332221 1111122 245
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEE-eccC-CCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 778 PSLLVIGCYETLELWNMTENKTLT-LSAH-DKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 778 ~~L~sgs~dg~I~Iwdl~~~~~~~-l~~h-~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
..|++++.++.|+.+|..+++.+- .... .....+..+. +.+|+.++.||.|++.|
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NGYLVVGDSEGYLHWIN 351 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--CCEEEEEeCCCEEEEEE
Confidence 678889999999999999998762 2111 1112222222 45677777888777653
No 300
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.74 E-value=3.7e-06 Score=87.92 Aligned_cols=211 Identities=12% Similarity=0.055 Sum_probs=134.2
Q ss_pred CCeEEEEecCCCCceeeeeccC-CCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCE
Q 003279 615 DRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 693 (834)
Q Consensus 615 Dg~I~IWDl~s~~~~i~~~~~h-~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ 693 (834)
+|.|..||..+++.....-... .....+..+ ++++. +++++.++.|+.||..+|+.+..+.....+.... ...++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~~-v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGGR-VYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETTE-EEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCCE-EEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccc
Confidence 6889999998877543332211 122222122 23343 4466789999999999999999888755543332 334577
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEE-eCCC---CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc-
Q 003279 694 ILAAAIENYISILDVETQVCRLKL-QGHK---NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK- 767 (834)
Q Consensus 694 ll~~s~dg~I~iwDl~t~~~~~~l-~~h~---~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~- 767 (834)
+++++.++.|+.+|.++++.+... .... ..........++..++++. ++.|..+|++++ +.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG---KLLWKYPVGEPRG 155 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT---EEEEEEESSTT-S
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC---cEEEEeecCCCCC
Confidence 888888899999999999988884 3221 1112222333367777777 999999999998 555555443322
Q ss_pred ---------eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 768 ---------FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 768 ---------I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+..-.+..++ .+++++.++.+..+|+.+++.+- ......+..+ ...++..|+.++.|+.|.+||
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPISGIYSL-PSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence 1222222344 78888888854444999999763 2223333332 356778888888999999886
No 301
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.71 E-value=2.1e-06 Score=87.69 Aligned_cols=243 Identities=11% Similarity=0.053 Sum_probs=160.0
Q ss_pred CcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCC-CEEEE
Q 003279 491 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLAT 569 (834)
Q Consensus 491 ~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg-~~Las 569 (834)
+....+..+......++.|+..+...+|....... .......|...|+-+.=.-|. --+..
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~------------------h~~~cd~snn~v~~~~r~cd~~~~~~i 133 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDG------------------HLYQCDVSNNDVTLVKRYCDLKFPLNI 133 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCccc------------------ceeeecccccchhhhhhhcccccceee
Confidence 34445556677778999999989999885443211 112223344433322211121 23566
Q ss_pred EeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCcee-e-eeccCCCCeEEEEEcc
Q 003279 570 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-R-TFTGHSTTVMSLDFHP 647 (834)
Q Consensus 570 gs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i-~-~~~~h~~~V~sl~fsp 647 (834)
++.|.++++.+++.+.....+....-.+.++++++|++++++.+....|..|.++...+.+ . .....++.-.+..|+.
T Consensus 134 ~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~ 213 (344)
T KOG4532|consen 134 ASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE 213 (344)
T ss_pred ccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc
Confidence 7778888888877654444443222348899999999999999999999999998655433 3 2333455667888887
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCceeeEe------ecCCCeeEEEEecCCC--EEEEEEcCCeEEEEECCCCeEEEEEeC
Q 003279 648 SKEDLLCSCDNNSEIRYWSINNGSCAGVF------KCQSGATQMRFQPRLG--RILAAAIENYISILDVETQVCRLKLQG 719 (834)
Q Consensus 648 dg~~llasgs~Dg~I~lwDl~s~~~i~~~------~~~~~i~~l~~sp~g~--~ll~~s~dg~I~iwDl~t~~~~~~l~~ 719 (834)
.. ..+|++..||++.|||++........ .+.+.+..+.|++.|. .|+..-.-+.+.+.|+++++....+..
T Consensus 214 ~~-~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i 292 (344)
T KOG4532|consen 214 ND-LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI 292 (344)
T ss_pred Cc-ceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEec
Confidence 74 47889999999999999875432221 1456789999998553 344444458999999999855443322
Q ss_pred -------CCC-CEEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003279 720 -------HKN-QVHSVCWNTSGEYLASVSDELVRVWSIGSG 752 (834)
Q Consensus 720 -------h~~-~I~sl~~spdg~~LasgsDg~I~IwDl~s~ 752 (834)
|.. .|...+|+.++.-+.+.++-.+.-|++.+.
T Consensus 293 ~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~sr 333 (344)
T KOG4532|consen 293 PDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILSR 333 (344)
T ss_pred CccccccccccccccccccCCCcccccccchhhheeecccc
Confidence 222 377788888887777777666777777654
No 302
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.70 E-value=2.4e-07 Score=94.00 Aligned_cols=200 Identities=12% Similarity=0.159 Sum_probs=123.3
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
+..++++..+..+.++. .++......|+-..+ ...+.++..|.++-.+-+.+--+..++++..||.+.+++.+
T Consensus 47 ~~~lf~~e~~~~~ss~g-----~~r~~~~~~~~rt~~--i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~ 119 (319)
T KOG4714|consen 47 EYILFTGETSSQIISLG-----KGRGRCISLWERDDG--IDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTD 119 (319)
T ss_pred hheeecccchhheeeec-----cceEEEechhhcccC--cCceeeeeccCCCCCcccccccCCceEecCCCceEEEEech
Confidence 34556666665555551 222222333333332 23344555666665555666667789999999999999977
Q ss_pred CCeE-EEEeccCCCCeEEEEECCCCCEEEEEeC-----CCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEE
Q 003279 583 SFTV-KSTLEEHTQWITDVRFSPSLSRLATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 656 (834)
Q Consensus 583 t~~~-~~~l~~h~~~I~~l~fspdg~~Latgs~-----Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasg 656 (834)
.... ...+..-...-.+.++...++.|.++.. -+..++|+++..+..+.... ....|.+++-+|.-.+++++|
T Consensus 120 ~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cg 198 (319)
T KOG4714|consen 120 KDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCG 198 (319)
T ss_pred HHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc-ccccchhhhCCcccccEEEEe
Confidence 5211 1222211111222333334555544421 23456777664332222122 234499999999999999999
Q ss_pred eCCCcEEEEECCCCceeeE-ee-cCCCeeEEEEec-CCCEEEEEEcCCeEEEEECCC
Q 003279 657 DNNSEIRYWSINNGSCAGV-FK-CQSGATQMRFQP-RLGRILAAAIENYISILDVET 710 (834)
Q Consensus 657 s~Dg~I~lwDl~s~~~i~~-~~-~~~~i~~l~~sp-~g~~ll~~s~dg~I~iwDl~t 710 (834)
+.||.+.+||.+....... ++ +..++..+-|+| ++..|++++.||.+..||..+
T Consensus 199 t~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 199 TDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 9999999999998743322 22 467899999999 467899999999999999875
No 303
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.69 E-value=6.6e-06 Score=85.42 Aligned_cols=227 Identities=17% Similarity=0.176 Sum_probs=133.4
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCC--eEEEEec---cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeee
Q 003279 558 CHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 558 l~fSpdg~~Lasgs~Dg~I~IWd~~t~--~~~~~l~---~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~ 632 (834)
++.+.||++||+.- |..|.|=..++. ..+.+.. ...-.=..++|+||+.+||.+...|+|++||+.... +..
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~--lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE--LFV 79 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce--eEE
Confidence 56788999888764 567777654431 2222222 222234689999999999999999999999998533 222
Q ss_pred ec-------cCCCCeEEEEEccCC-----CcEEEEEeCCCcEEEEECCC-----CceeeEeec----CCCeeEEEEecCC
Q 003279 633 FT-------GHSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSINN-----GSCAGVFKC----QSGATQMRFQPRL 691 (834)
Q Consensus 633 ~~-------~h~~~V~sl~fspdg-----~~llasgs~Dg~I~lwDl~s-----~~~i~~~~~----~~~i~~l~~sp~g 691 (834)
+. .-...|..+.|.+.. ...|++-..+|.++-|-+.. ......|.. ..+|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 21 123566777775432 22344556678777776532 223333332 5679999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEc---CCCCEEEEEeCC------eEEEEEcCCCCCceeEEEee
Q 003279 692 GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN---TSGEYLASVSDE------LVRVWSIGSGSKGECIHELS 762 (834)
Q Consensus 692 ~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~s---pdg~~LasgsDg------~I~IwDl~s~~~~~~i~~~~ 762 (834)
+.|++|+....= ++. -......+++-..- |..+.+....|+ +..+|.+-+. .......
T Consensus 160 ~LLlVgG~~~~~------~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~---~~fs~~~ 226 (282)
T PF15492_consen 160 RLLLVGGCEQNQ------DGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF---KFFSRQG 226 (282)
T ss_pred CEEEEeccCCCC------Ccc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce---eeeeccc
Confidence 998888764320 000 00011112211111 111111111111 1223333221 1222223
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 763 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 763 ~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
.....|..+.++|||..|++...+|.|.+|++.+-+..
T Consensus 227 ~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 227 QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 34678999999999999999999999999999876655
No 304
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2.2e-06 Score=91.87 Aligned_cols=250 Identities=14% Similarity=0.144 Sum_probs=149.7
Q ss_pred EEEEeCCCCeEEEEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEE
Q 003279 576 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 654 (834)
Q Consensus 576 I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~lla 654 (834)
|++.+..+.+....+..|...|.+++|+|..+ ++..++.+.+|+|.|+++.. .+..+..+ ..+++++|.-+..++++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-VVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-eeeheecc-CCceeeeeccCCcceeE
Confidence 66666666666677788999999999999766 78899999999999999854 46666666 78999999999999999
Q ss_pred EEeCCCcEEEEECCCCceee-Eeec---CCCeeEEEE------ecCCCEEEEEEcCCeEEEEEC----CCCeEEEEEeCC
Q 003279 655 SCDNNSEIRYWSINNGSCAG-VFKC---QSGATQMRF------QPRLGRILAAAIENYISILDV----ETQVCRLKLQGH 720 (834)
Q Consensus 655 sgs~Dg~I~lwDl~s~~~i~-~~~~---~~~i~~l~~------sp~g~~ll~~s~dg~I~iwDl----~t~~~~~~l~~h 720 (834)
.|..+|.|.|||++..+-.. .+.. ..+|..++. .+.++.+++...+ +..|++ ....++..+. .
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~ 329 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-P 329 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-C
Confidence 99999999999998654221 1111 123333332 2334444444433 223332 2223333332 3
Q ss_pred CCCEEEEEEcCCCCEEEEEe--CC---eEE---E-EEcCCCCCceeEEE-eecC-CC------ceEEEEEeCCCCEEEEE
Q 003279 721 KNQVHSVCWNTSGEYLASVS--DE---LVR---V-WSIGSGSKGECIHE-LSCT-GN------KFHSCVFHPTFPSLLVI 783 (834)
Q Consensus 721 ~~~I~sl~~spdg~~Lasgs--Dg---~I~---I-wDl~s~~~~~~i~~-~~~~-~~------~I~svafspdg~~L~sg 783 (834)
.+.+.++.+.+-.+.++... +- .++ . .|...+ ..+.. -..+ +. .-..+.-.++.++|+..
T Consensus 330 pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG---~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~ 406 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDG---FPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVV 406 (463)
T ss_pred CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccC---ceeeeecccccCCcccccccccceeccccccEEEEe
Confidence 44555555555444444332 11 111 1 111111 11111 0011 10 01122223455555544
Q ss_pred Ec-CCeEEEEECCCCeEEEeccCCCCeEEEEEeCC--CCEEEEEecCCcEEEeC
Q 003279 784 GC-YETLELWNMTENKTLTLSAHDKLVSSLAASTV--NGMVASASHDKCVKIWK 834 (834)
Q Consensus 784 s~-dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspd--g~~LaSgs~DG~I~IWd 834 (834)
+. .+.+.+||..+.+++.....+.+|.+++.... +.+|++-. |..++||+
T Consensus 407 gd~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk 459 (463)
T KOG1645|consen 407 GDSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYK 459 (463)
T ss_pred cCCcceeEEeccchhheeeecccCcceeecceeecCCcchhhhee-cceEEEEe
Confidence 43 45899999999999866667788988876543 33666654 45677764
No 305
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.63 E-value=1.8e-07 Score=96.80 Aligned_cols=234 Identities=18% Similarity=0.287 Sum_probs=147.4
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCce----eeeeccCC------------CCeEEEEEccC-CCcEEEE
Q 003279 593 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS----LRTFTGHS------------TTVMSLDFHPS-KEDLLCS 655 (834)
Q Consensus 593 h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~----i~~~~~h~------------~~V~sl~fspd-g~~llas 655 (834)
..+.|+++.|...|.||++|...|.|.+|.-+....+ ...+.+|. ..|..|.|..+ +..-+..
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 4467999999999999999999999999976643311 12233443 35777877644 3444556
Q ss_pred EeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEE--------c-CCeEEEEECCCCeEEEEEeCCCCCEEE
Q 003279 656 CDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--------I-ENYISILDVETQVCRLKLQGHKNQVHS 726 (834)
Q Consensus 656 gs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s--------~-dg~I~iwDl~t~~~~~~l~~h~~~I~s 726 (834)
.+.|.+|++|.+.......+.. .....-.-+|-++-+.+.. . |..|..+ .+...-..|...|.+
T Consensus 105 stNdktiKlWKiyeknlk~va~--nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~-----p~rvyaNaH~yhiNS 177 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAE--NNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK-----PCRVYANAHPYHINS 177 (460)
T ss_pred ecCCceeeeeeeecccchhhhc--cccccccccccCCCcCCHHHhhcccccccceEEEec-----cceeccccceeEeee
Confidence 6779999999987542211111 0111111111111111100 0 1111111 111112358888999
Q ss_pred EEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCC-----CceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEE
Q 003279 727 VCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG-----NKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 727 l~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~-----~~I~svafspdg-~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
+.|..|...++++.|=.|.+|++.-....-.+..+..|. ..|++..|+|.. ..+...++.|.|++-|++.....
T Consensus 178 iS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 178 ISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred eeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence 999999999999889999999987654334444455443 457888999965 55667788899999999732211
Q ss_pred ---------E--------eccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 801 ---------T--------LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 801 ---------~--------l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
. +..-...|..+.|+++|++|++-+. -+|+|||
T Consensus 258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwD 307 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWD 307 (460)
T ss_pred cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEe
Confidence 1 1122356889999999999987654 5799997
No 306
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.62 E-value=7.4e-06 Score=98.47 Aligned_cols=244 Identities=11% Similarity=0.148 Sum_probs=153.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceee
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 631 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~ 631 (834)
++.|.++.|.-+..-|+.+..+|.|.+.|.++.... ....-...|.+++|+||...++..+.+.++.+-+-.-.-...+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 367999999999999999999999999998875443 3334567899999999999999999988887754321000001
Q ss_pred ee---ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-CceeeEeecCCCeeEEEEecCCCEEEEEEc----C-Ce
Q 003279 632 TF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAI----E-NY 702 (834)
Q Consensus 632 ~~---~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s-~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~----d-g~ 702 (834)
.+ ....+....+-|-.... -| -|+ .|.....+... .+.......++.-+.|.|--||.++++... + ..
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeT-qf-rgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKET-QF-RGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred ccccccccccccceecccccce-ee-ecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 11 00112223333332211 11 111 12121111111 111111123455677999999999888443 3 78
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 003279 703 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 778 (834)
Q Consensus 703 I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~ 778 (834)
|+|||-+ +..-..-..-.+--.+++|-|.|.++++.. |+.|.+|.-+.-........+.....++..++|+.++.
T Consensus 224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred EEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCC
Confidence 9999987 432222222233446899999999998854 56799998665444444444555555699999999999
Q ss_pred EEEEE---EcCCeEEEEECCCCeEE
Q 003279 779 SLLVI---GCYETLELWNMTENKTL 800 (834)
Q Consensus 779 ~L~sg---s~dg~I~Iwdl~~~~~~ 800 (834)
.|++. .....|++|-+.+....
T Consensus 303 iLAv~~~~~e~~~v~lwt~~NyhWY 327 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTGNYHWY 327 (1265)
T ss_pred ceeeeecccccceEEEEEecCeEEE
Confidence 88883 33446999998876543
No 307
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.60 E-value=9.9e-06 Score=93.66 Aligned_cols=179 Identities=11% Similarity=0.039 Sum_probs=121.1
Q ss_pred EccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc-------------------------
Q 003279 645 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI------------------------- 699 (834)
Q Consensus 645 fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~------------------------- 699 (834)
+.|||..+..+.-..+.+.++|.++.+....+........+.++++++++++++.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 4456655544555567888889998888888887777788888999888887761
Q ss_pred ---------------CCeEEEEECCC----C-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC---
Q 003279 700 ---------------ENYISILDVET----Q-VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK--- 754 (834)
Q Consensus 700 ---------------dg~I~iwDl~t----~-~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~--- 754 (834)
++.|.++|.++ + ..+..+. -......+.++|||+++++++ +.+|.|+|+.+...
T Consensus 280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~ 358 (635)
T PRK02888 280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD 358 (635)
T ss_pred HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh
Confidence 24477777776 2 3333333 445678899999999999888 88999999987532
Q ss_pred ------ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC----------CeEE-EeccCCCCe-----EEE
Q 003279 755 ------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE----------NKTL-TLSAHDKLV-----SSL 812 (834)
Q Consensus 755 ------~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~----------~~~~-~l~~h~~~V-----~~l 812 (834)
...+.+... .......+|.++|....+.--|..|..||+.+ ..++ ++.-|-.+. ..=
T Consensus 359 ~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~ 437 (635)
T PRK02888 359 GKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGE 437 (635)
T ss_pred ccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCC
Confidence 112333333 33445678999998777777888999999876 2333 233332221 122
Q ss_pred EEeCCCCEEEEEe
Q 003279 813 AASTVNGMVASAS 825 (834)
Q Consensus 813 afspdg~~LaSgs 825 (834)
.-.|||++|++..
T Consensus 438 t~~~dgk~l~~~n 450 (635)
T PRK02888 438 TKEADGKWLVSLN 450 (635)
T ss_pred cCCCCCCEEEEcc
Confidence 2367888888764
No 308
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2e-06 Score=92.23 Aligned_cols=245 Identities=14% Similarity=0.133 Sum_probs=154.0
Q ss_pred EEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCeEEEE
Q 003279 544 EFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVW 621 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IW 621 (834)
....+.+|...|..++|||..+ +|..++.+.+|.|.|+++...+..+..+ ..+++++|.-|. .+|+.|...|.|.||
T Consensus 185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence 3457788999999999999776 7888999999999999999998888877 789999998864 567777789999999
Q ss_pred ecCCCCceeeeecc--CCCCeEEEEEccCC-----CcEEEEEeCCCcEEEEECCC----CceeeEeecCCCeeEEEEecC
Q 003279 622 DTENPDYSLRTFTG--HSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSINN----GSCAGVFKCQSGATQMRFQPR 690 (834)
Q Consensus 622 Dl~s~~~~i~~~~~--h~~~V~sl~fspdg-----~~llasgs~Dg~I~lwDl~s----~~~i~~~~~~~~i~~l~~sp~ 690 (834)
|++..+..+..+.+ ...+|..|+.-+-+ ..+++.... .+..|++.- ..++..+...+.+.++.+++.
T Consensus 264 D~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~ 341 (463)
T KOG1645|consen 264 DMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQYHGV 341 (463)
T ss_pred EccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeeeecCc
Confidence 99976654444433 23455555433211 224433332 245565532 223333344555667777776
Q ss_pred CCEEEEEEcCC-------eEE-EEECCCCeEEEEEe-CC-CCC---E---EEEEEcCCCCEEEEEe--CCeEEEEEcCCC
Q 003279 691 LGRILAAAIEN-------YIS-ILDVETQVCRLKLQ-GH-KNQ---V---HSVCWNTSGEYLASVS--DELVRVWSIGSG 752 (834)
Q Consensus 691 g~~ll~~s~dg-------~I~-iwDl~t~~~~~~l~-~h-~~~---I---~sl~~spdg~~Lasgs--Dg~I~IwDl~s~ 752 (834)
.+++++....+ .|- -.|..+|..+...+ ++ ... + ..+.-.++..+|+..+ .+.+.+||..+.
T Consensus 342 snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ 421 (463)
T KOG1645|consen 342 SNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSF 421 (463)
T ss_pred cceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchh
Confidence 67777776542 111 12333444333222 12 111 0 1122235566666655 458999999988
Q ss_pred CCceeEEEeecCCCceEEEEEe-CCCCEEEEEEcCCeEEEEECC
Q 003279 753 SKGECIHELSCTGNKFHSCVFH-PTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 753 ~~~~~i~~~~~~~~~I~svafs-pdg~~L~sgs~dg~I~Iwdl~ 795 (834)
+.+.++... .+|.+++.. -++..++..-.|..++||..+
T Consensus 422 ---evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 422 ---EVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred ---heeeecccC-cceeecceeecCCcchhhheecceEEEEecC
Confidence 566666543 667766643 345545555556678887654
No 309
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.54 E-value=9.9e-07 Score=89.67 Aligned_cols=195 Identities=13% Similarity=0.126 Sum_probs=113.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE------------EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVK------------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~------------~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
|+.+.|+.+ ..|+++..++.+..+....+.++ ..+..|.++-.+-+.+-.++.++++..||.+.+++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 555556543 35666666666655544433332 22223333333333333467799999999999999
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEe-----CCCcEEEEECCCCceee-EeecCCCeeEEEEecCCCEE-E
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRI-L 695 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs-----~Dg~I~lwDl~s~~~i~-~~~~~~~i~~l~~sp~g~~l-l 695 (834)
.+........+..-...-.+.++...++ ++.++. .-+..+.|+++..+.+. .......+.+++-+|.-..+ +
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~ 196 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVC 196 (319)
T ss_pred chHHHhhhhhcccccccccccceeeccc-EEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEE
Confidence 8752211111111111112222222333 222221 11244556655433222 12223458899999966555 4
Q ss_pred EEEcCCeEEEEECCCCe-EEEEEeCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCC
Q 003279 696 AAAIENYISILDVETQV-CRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGS 751 (834)
Q Consensus 696 ~~s~dg~I~iwDl~t~~-~~~~l~~h~~~I~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s 751 (834)
+|+.||.+.+||.+... ++..+..|+.+|..+.|+| ++..|++++ ||.+.-||..+
T Consensus 197 cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 197 CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 55667999999999873 3445677999999999998 567888888 99999999765
No 310
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.54 E-value=2e-06 Score=92.39 Aligned_cols=156 Identities=19% Similarity=0.222 Sum_probs=109.1
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEecCCCCc--eeeeeccCCCCeEEEEEccCCCcEEE--EEeCCCcEEEEECCCCce
Q 003279 597 ITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLC--SCDNNSEIRYWSINNGSC 672 (834)
Q Consensus 597 I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~--~i~~~~~h~~~V~sl~fspdg~~lla--sgs~Dg~I~lwDl~s~~~ 672 (834)
+..+.+++++++||++..++...++++..... .......-...-+.+.|..+....++ ..++...+.+|....+.+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 44556677888888888888877777765332 11111112223344444444343332 233445566666666888
Q ss_pred eeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE-eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcC
Q 003279 673 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG 750 (834)
Q Consensus 673 i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l-~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~ 750 (834)
...+.|-+.+..++|+||+.+|+++..|..|+|-.......+..+ -||+..|..++.-++-. |++++ |++|++||+.
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDIT 223 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-eeecCCCCcEEEEecc
Confidence 888888888999999999999999999999999887766555554 36999999999986655 55555 9999999999
Q ss_pred CCC
Q 003279 751 SGS 753 (834)
Q Consensus 751 s~~ 753 (834)
+++
T Consensus 224 sgk 226 (390)
T KOG3914|consen 224 SGK 226 (390)
T ss_pred cCC
Confidence 994
No 311
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.54 E-value=4.5e-08 Score=112.47 Aligned_cols=200 Identities=17% Similarity=0.268 Sum_probs=150.3
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC-cE
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-EI 662 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg-~I 662 (834)
.+...++..|+...+|++|+-+.++|+.|+..|.|++|++.++.. ...+.+|...|+-+.-+.+|..+|.+++... ..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc-cccccccccccccccccCCcceeeeeccccCchH
Confidence 455677888999999999999999999999999999999998765 6778899999999999999988886666555 67
Q ss_pred EEEECCC-CceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE-eC---CCCCEEEEEEcCCCCEEE
Q 003279 663 RYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-QG---HKNQVHSVCWNTSGEYLA 737 (834)
Q Consensus 663 ~lwDl~s-~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l-~~---h~~~I~sl~~spdg~~La 737 (834)
.+|++.+ +.....| .+..++.|+.....-+.|+......+||+.++.+..++ .+ ....-++..|+|+..+++
T Consensus 1170 aLW~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HHhccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 7899865 3333333 45667888877566677777788999999998766552 22 222336789999998776
Q ss_pred EEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 738 SVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 738 sgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
- || .+||++.. ..++.|..-. ....-.|+|.|..+++-+ .|||+++-+.+
T Consensus 1247 n--dG--vLWDvR~~---~aIh~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1247 N--DG--VLWDVRIP---EAIHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred e--Cc--eeeeeccH---HHHhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHH
Confidence 3 45 58999887 4455544322 222347999999887754 58999887655
No 312
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=8.8e-07 Score=95.93 Aligned_cols=207 Identities=15% Similarity=0.154 Sum_probs=149.1
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC--CCceeeeeccCCCCeEEEEEccCCCcEEEEEeC-CCcEEEEECC
Q 003279 592 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSIN 668 (834)
Q Consensus 592 ~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s--~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~-Dg~I~lwDl~ 668 (834)
-|.+.|+.+... -.+++++++.||.++.|.-.. +...+..+..|...|.+++.+-++- ++++.+. |..++++|++
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~-L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW-LFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce-eEeeccCcccceeEEEee
Confidence 477777776554 457999999999999997653 2233456667888999999988854 7778666 9999999999
Q ss_pred CCceeeEeecCCCeeEEEEecCCC----EEEEEE-cCCeEEEEECCCCe--EEEEEeCCCCCEEEEEEcCCCCEEEEEe-
Q 003279 669 NGSCAGVFKCQSGATQMRFQPRLG----RILAAA-IENYISILDVETQV--CRLKLQGHKNQVHSVCWNTSGEYLASVS- 740 (834)
Q Consensus 669 s~~~i~~~~~~~~i~~l~~sp~g~----~ll~~s-~dg~I~iwDl~t~~--~~~~l~~h~~~I~sl~~spdg~~Lasgs- 740 (834)
+-..+..++...-...++|....+ .+++.. .++.|.++|-.... ....-.-|..+|.++.+++-+..+++..
T Consensus 85 n~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred ccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 877665555433333333332222 333333 36899999987653 2333344999999999999999998888
Q ss_pred CCeEEEEEcCC-CCC-----------ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 741 DELVRVWSIGS-GSK-----------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 741 Dg~I~IwDl~s-~~~-----------~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
.|.|..|.... ... ...+..+........++.|+|++..+.+.+.|..|++++.++++++
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 88999998873 100 0112233344567789999999999999999999999999998754
No 313
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.53 E-value=0.00024 Score=81.16 Aligned_cols=243 Identities=14% Similarity=0.096 Sum_probs=141.0
Q ss_pred eEEEEEcCCCCEEEEE-eCCC----cEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC-----------eE
Q 003279 555 VESCHFSPDGKLLATG-GHDK----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-----------TV 618 (834)
Q Consensus 555 V~sl~fSpdg~~Lasg-s~Dg----~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg-----------~I 618 (834)
+..+++||||++||.+ +..| .|+|+|+++++.+...-... ....+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4467899999998876 3333 59999999998775321111 122499999988877665433 38
Q ss_pred EEEecCCCCce-eeeeccCCCC--eEEEEEccCCCcEEEEEeCCC---cEEEEECCCC-----ceeeEeecCCCeeEEEE
Q 003279 619 RVWDTENPDYS-LRTFTGHSTT--VMSLDFHPSKEDLLCSCDNNS---EIRYWSINNG-----SCAGVFKCQSGATQMRF 687 (834)
Q Consensus 619 ~IWDl~s~~~~-i~~~~~h~~~--V~sl~fspdg~~llasgs~Dg---~I~lwDl~s~-----~~i~~~~~~~~i~~l~~ 687 (834)
++|++.++... ...+...... ...+..+++++.+++...... .|++.|+..+ ...........+....-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88888876543 2333333332 568889999998887665443 5888898875 33333333344444333
Q ss_pred ecCCCEEEEEEc----CCeEEEEECCCCe---EEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCce
Q 003279 688 QPRLGRILAAAI----ENYISILDVETQV---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGE 756 (834)
Q Consensus 688 sp~g~~ll~~s~----dg~I~iwDl~t~~---~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~ 756 (834)
+. +..+++.+. .+.|...++.... ....+..+...+.-..+...+.+|+... ++ .|++|++..+ .
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~---~ 360 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG---K 360 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T---E
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC---c
Confidence 33 444444433 3578888888764 2334555655433333334455555554 55 7999999822 2
Q ss_pred eEEEee-cCCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCeEEEe
Q 003279 757 CIHELS-CTGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTL 802 (834)
Q Consensus 757 ~i~~~~-~~~~~I~svafspdg~~L~sgs~d----g~I~Iwdl~~~~~~~l 802 (834)
....+. ...+.|..+...++++.+...-.. .+|+.||+.+++...+
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 333332 234446666666666654433222 2899999999887643
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=3.1e-06 Score=97.77 Aligned_cols=183 Identities=13% Similarity=0.206 Sum_probs=132.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCcee
Q 003279 594 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 673 (834)
Q Consensus 594 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i 673 (834)
.+.++|++++ +++|+.|+.+|.|++++....- .+...|... ..+|. ++++|+.||.|.|..+-+.+..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~---~~~~~~s~~------~~~Ge-y~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP---KTNFDHSSS------ILEGE-YVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc---ccccccccc------ccCCc-eEEEecCCCcEEEeeccCCccc
Confidence 3457777775 5799999999999999987431 333445443 34455 7779999999999999999999
Q ss_pred eEeecCCCeeEEEEecC-----CCEEEEEEcCCeEEEEECCC--CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEE
Q 003279 674 GVFKCQSGATQMRFQPR-----LGRILAAAIENYISILDVET--QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRV 746 (834)
Q Consensus 674 ~~~~~~~~i~~l~~sp~-----g~~ll~~s~dg~I~iwDl~t--~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~I 746 (834)
..+....++.+++++|+ .+.+++|+..| +.++.-+= .+....+....++|.+++|. |.++|-++|-.|+|
T Consensus 107 ~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~v 183 (846)
T KOG2066|consen 107 TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKV 183 (846)
T ss_pred eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEE
Confidence 99999999999999997 57789999888 77765431 12222455577899999996 88999999878999
Q ss_pred EEcCCCCCceeEEEeecCCC------ceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 747 WSIGSGSKGECIHELSCTGN------KFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 747 wDl~s~~~~~~i~~~~~~~~------~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
||+.+. ..+..+..... ....+.|.++.+ | +.|...+|+|..++.
T Consensus 184 yd~~~~---~~l~~i~~p~~~~R~e~fpphl~W~~~~~-L-VIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 184 YDTPTR---QRLTNIPPPSQSVRPELFPPHLHWQDEDR-L-VIGWGDSVKICSIKK 234 (846)
T ss_pred Eecccc---ceeeccCCCCCCCCcccCCCceEecCCCe-E-EEecCCeEEEEEEec
Confidence 999887 33333332222 224567777654 3 444555788888773
No 315
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.50 E-value=1.2e-05 Score=91.62 Aligned_cols=222 Identities=11% Similarity=0.124 Sum_probs=126.5
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc
Q 003279 592 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 671 (834)
Q Consensus 592 ~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~ 671 (834)
...-....+.++|++++++++ .||...||...... ... .+.-..++|...+. +|+-.....|.++.--+.+
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r--~k~----~G~g~~~vw~~~n~--yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWR--NKA----FGSGLSFVWSSRNR--YAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTE--EEE----EEE-SEEEE-TSSE--EEEE-TTS-EEEEETTEE-
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCc--ccc----cCceeEEEEecCcc--EEEEECCCeEEEEEcCccc
Confidence 344557899999999999885 56777777743221 111 24456788888543 5566668889997433333
Q ss_pred eeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003279 672 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGS 751 (834)
Q Consensus 672 ~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s 751 (834)
....+..+..+..+.. |..| ....++.|.+||+.+++.+..+... +|..+.|+++|.+++..++..+.|++...
T Consensus 101 ~~k~i~~~~~~~~If~---G~LL-~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~ 174 (443)
T PF04053_consen 101 VVKSIKLPFSVEKIFG---GNLL-GVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNL 174 (443)
T ss_dssp TT-----SS-EEEEE----SSSE-EEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-H
T ss_pred cceEEcCCcccceEEc---CcEE-EEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecc
Confidence 3344554444444443 4544 4445569999999999999998743 48999999999999999988888887653
Q ss_pred C------C--CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEE
Q 003279 752 G------S--KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 823 (834)
Q Consensus 752 ~------~--~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaS 823 (834)
. + ....+..+..-...|.+.+|..+ .++..+.. .|+. +-.|+...+..-+.++.=+.+.+..+.|+.
T Consensus 175 ~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~ 249 (443)
T PF04053_consen 175 EAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYL 249 (443)
T ss_dssp HHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEE
T ss_pred hhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEE
Confidence 2 0 00123333333678889999988 45555554 7776 566776666666778888888887788998
Q ss_pred EecCCcEEEe
Q 003279 824 ASHDKCVKIW 833 (834)
Q Consensus 824 gs~DG~I~IW 833 (834)
...|+.|..+
T Consensus 250 ~Dr~~~v~~~ 259 (443)
T PF04053_consen 250 IDRDGNVISY 259 (443)
T ss_dssp E-TT--EEEE
T ss_pred EECCCCEEEE
Confidence 8899888754
No 316
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.49 E-value=4.2e-06 Score=97.51 Aligned_cols=175 Identities=14% Similarity=0.188 Sum_probs=131.1
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeecCC-CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEc
Q 003279 652 LLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 730 (834)
Q Consensus 652 llasgs~Dg~I~lwDl~s~~~i~~~~~~~-~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~s 730 (834)
.++.|+.-..+..+|+++.+..+...... ++.-++ .+++.+++|...|+|.+-|.++.+.+.++..|.+.|..+..
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv- 225 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV- 225 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec-
Confidence 45567777789999999988887777644 444444 45678999999999999999999999999999999987655
Q ss_pred CCCCEEEEEe----------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEEC---CC
Q 003279 731 TSGEYLASVS----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNM---TE 796 (834)
Q Consensus 731 pdg~~Lasgs----------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg-~~L~sgs~dg~I~Iwdl---~~ 796 (834)
.|+.|++|+ |..|+|||++.-....++ ..+.++ .-+.|+|.- ..+++++..|...+.|. .+
T Consensus 226 -~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI---~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 226 -QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI---QFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred -cCCeEEEeecccccccccccchhhhhhhhhhhccCCc---ccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 578888775 336899999987432332 222222 446788865 45788899999999983 33
Q ss_pred Ce--EEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 797 NK--TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 797 ~~--~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.. ...+......+..+++++++..+|.|..+|.|.+|-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 21 123334455699999999999999999999999993
No 317
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.47 E-value=0.00043 Score=76.24 Aligned_cols=269 Identities=14% Similarity=0.090 Sum_probs=141.4
Q ss_pred EEEcCCCCEEEEEeC-CC--cEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeec
Q 003279 558 CHFSPDGKLLATGGH-DK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 634 (834)
Q Consensus 558 l~fSpdg~~Lasgs~-Dg--~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~ 634 (834)
=+|.+||+.|+.++. || .+++.|+++++...-..+.........++++.+.++....+..|+..|+.+.+. ...+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~-~~vy~ 119 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE-RVVYE 119 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-EEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-EEEEE
Confidence 367889977666554 54 566778899877755443323344567778888887776777899999998664 34444
Q ss_pred cCCCCeEEEEEc--cCCCcEEEEEe----------------------CCCcEEEEECCCCceeeEeecCCCeeEEEEecC
Q 003279 635 GHSTTVMSLDFH--PSKEDLLCSCD----------------------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR 690 (834)
Q Consensus 635 ~h~~~V~sl~fs--pdg~~llasgs----------------------~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~ 690 (834)
.....+-...|. .++. .++..- ..+.|...|+.+|+....+....-+..+.|+|.
T Consensus 120 ~p~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT 198 (386)
T ss_dssp --TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred CCcccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence 455555455554 2333 332221 124677788999988888887788899999998
Q ss_pred CCEEEEEEcCC-----eEEEEECCC-CeEEEEEeCC--CCCEEEEEEcCCCCEEEEEe---C---CeEEEEEcCCCCCce
Q 003279 691 LGRILAAAIEN-----YISILDVET-QVCRLKLQGH--KNQVHSVCWNTSGEYLASVS---D---ELVRVWSIGSGSKGE 756 (834)
Q Consensus 691 g~~ll~~s~dg-----~I~iwDl~t-~~~~~~l~~h--~~~I~sl~~spdg~~Lasgs---D---g~I~IwDl~s~~~~~ 756 (834)
...+++-|.+| .-+||-+++ +.....+..+ ...+..=-|.+||..|.--+ . ..|.-+|+.++.. +
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-~ 277 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-R 277 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-E
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-e
Confidence 77777766544 124554432 2333333333 23455667899998776533 2 2677778887643 1
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCC----------------eEEEEECCCCeEEEeccCCC---------C--e
Q 003279 757 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYE----------------TLELWNMTENKTLTLSAHDK---------L--V 809 (834)
Q Consensus 757 ~i~~~~~~~~~I~svafspdg~~L~sgs~dg----------------~I~Iwdl~~~~~~~l~~h~~---------~--V 809 (834)
.+... .....+..++||.+++-=++|. -|+++++..+....+..|.. . =
T Consensus 278 ~~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~h 353 (386)
T PF14583_consen 278 RLMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTH 353 (386)
T ss_dssp EEEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT-
T ss_pred EEEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCC
Confidence 22211 2344566678888655433332 46778888877654444431 1 2
Q ss_pred EEEEEeCCCCEEE-EEecCCcEEEe
Q 003279 810 SSLAASTVNGMVA-SASHDKCVKIW 833 (834)
Q Consensus 810 ~~lafspdg~~La-Sgs~DG~I~IW 833 (834)
..+.|+||+++|+ ++...|...||
T Consensus 354 Php~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 354 PHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp ---EE-TTSSEEEEEE-TTSS-EEE
T ss_pred CCCccCCCCCEEEEECCCCCCccEE
Confidence 4679999999665 55567776665
No 318
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=0.00021 Score=80.77 Aligned_cols=251 Identities=12% Similarity=0.133 Sum_probs=175.1
Q ss_pred EEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEE
Q 003279 576 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 654 (834)
Q Consensus 576 I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~lla 654 (834)
+.+++..+......+..+. ....+.+.+++..+.... ....+.+.+... .............-..+++++.+..+++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeeccccc-ceeeeeccCCCccccceeeCCCCCeEEE
Confidence 6666666666555554333 556788888885544443 333455555442 2111111111144567888999888888
Q ss_pred EEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc---CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcC
Q 003279 655 SCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI---ENYISILDVETQVCRLKLQGHKNQVHSVCWNT 731 (834)
Q Consensus 655 sgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~---dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~sp 731 (834)
....+..|.+.|..+.+.............++++++++.++++.. ++.+.+.|..+.+.......-..+ ..++++|
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p 169 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP 169 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence 888889999999998888888887778899999999999888877 589999999999888775544344 8999999
Q ss_pred CCCEEEEEe--CCeEEEEEcCCCCCceeEE-E---eecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEEEe
Q 003279 732 SGEYLASVS--DELVRVWSIGSGSKGECIH-E---LSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTL 802 (834)
Q Consensus 732 dg~~Lasgs--Dg~I~IwDl~s~~~~~~i~-~---~~~~~~~I~svafspdg~~L~sgs~d---g~I~Iwdl~~~~~~~l 802 (834)
+|..++.+. ++.|.++|..... ... . ..........+.+++++.++++.... +.+...|..++.....
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~---v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNS---VVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcc---eeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 999777776 8899999976652 221 1 11223445678999999987777665 4899999999888754
Q ss_pred c-cCCC-CeEEEEEeCCCCEEEEEecC-CcEEE
Q 003279 803 S-AHDK-LVSSLAASTVNGMVASASHD-KCVKI 832 (834)
Q Consensus 803 ~-~h~~-~V~~lafspdg~~LaSgs~D-G~I~I 832 (834)
. .-.. ....+.++|+|..+.+.... +.|.+
T Consensus 247 ~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 247 DLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred ccccccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 2 2222 56778999999988777433 44443
No 319
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.46 E-value=3e-06 Score=98.71 Aligned_cols=180 Identities=17% Similarity=0.273 Sum_probs=142.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEE
Q 003279 563 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 642 (834)
Q Consensus 563 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~s 642 (834)
++..++.|+.-..+..+|+.+.+..+........|+-++. +++++++|...|+|.+-|..+.+ .+.++..|.+.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~-~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFE-TIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCc-eeeeeeccccceee
Confidence 3456788888888999999998888777655555666665 67899999999999999999866 48999999999999
Q ss_pred EEEccCCCcEEEEEeC---------CCcEEEEECCCCceeeEeecCCCeeEEEEecC-CCEEEEEEcCCeEEEEE---CC
Q 003279 643 LDFHPSKEDLLCSCDN---------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPR-LGRILAAAIENYISILD---VE 709 (834)
Q Consensus 643 l~fspdg~~llasgs~---------Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~-g~~ll~~s~dg~I~iwD---l~ 709 (834)
++.. .++|++|+. |..|+|||++..+.+.-+..+....-+.|+|. ...+++++..|...+.| +.
T Consensus 223 fDv~---GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 223 FDVQ---GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred eecc---CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccC
Confidence 8887 336777764 55789999999888877777667777888885 35677888889999999 43
Q ss_pred CC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEE
Q 003279 710 TQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 748 (834)
Q Consensus 710 t~-~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwD 748 (834)
+. ..+..+......+..+++++++..++.+. +|.|.+|.
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 33 22333333445599999999999999999 99999997
No 320
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.45 E-value=0.00011 Score=76.47 Aligned_cols=187 Identities=14% Similarity=0.149 Sum_probs=110.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-------cCCCCeEEEEECCC------CCEEEEEeCCCeEEEE
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-------EHTQWITDVRFSPS------LSRLATSSADRTVRVW 621 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-------~h~~~I~~l~fspd------g~~Latgs~Dg~I~IW 621 (834)
=.-++||||+.+||.+...|+|++||+.... +..+. .-...|..+.|.+. ...|++-..+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 4569999999999999999999999987533 33332 12356777777653 2246677788888888
Q ss_pred ecCCC---Cc-eeee--e-ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEE
Q 003279 622 DTENP---DY-SLRT--F-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 694 (834)
Q Consensus 622 Dl~s~---~~-~i~~--~-~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~l 694 (834)
-+..+ +. .... + ..+...|.++.|+|....+++.|.....-..+. ....++++-.+..+..+.
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~----------a~~~GLtaWRiL~~~Pyy 194 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK----------ASSCGLTAWRILSDSPYY 194 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc----------ccccCceEEEEcCCCCcE
Confidence 76431 11 1122 2 224678999999998765554444332100000 011223333222222221
Q ss_pred E--EEEcCCe------EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003279 695 L--AAAIENY------ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 752 (834)
Q Consensus 695 l--~~s~dg~------I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 752 (834)
. +...|+. ..+|.+-+.+...........|..+..||||.+|++.. +|.|.+|++.+-
T Consensus 195 k~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 195 KQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred EEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 1 1111111 12233222222222223567899999999999999999 999999999875
No 321
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.44 E-value=5.7e-07 Score=94.58 Aligned_cols=170 Identities=12% Similarity=0.170 Sum_probs=125.3
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-----eEEEEEe
Q 003279 644 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-----VCRLKLQ 718 (834)
Q Consensus 644 ~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~-----~~~~~l~ 718 (834)
+|+-+-.-+-++.+.+-.|-+.|++++... .|...+.|.++.|.-.++.++.|+..|.|..+|++.+ .+...+.
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~q-sf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly 296 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQ-SFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY 296 (425)
T ss_pred hhhhccceeeecccccceeEEEEeeccccc-ccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE
Confidence 555332222245566778999999987543 3345678899999998899999999999999999864 4555555
Q ss_pred CCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE--EEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 719 GHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH--SCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 719 ~h~~~I~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~--svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
|...|+++..-. ++.+|.+.+ +|+|++||++.-+..+.+..+.+|.+.-. -+..++....|++++.|-..+||.+
T Consensus 297 -h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl 375 (425)
T KOG2695|consen 297 -HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSL 375 (425)
T ss_pred -cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEec
Confidence 899999997766 677777777 99999999998744445888888765433 3445677788999999999999999
Q ss_pred CCCeEEEeccC-----CCCeEEEEEe
Q 003279 795 TENKTLTLSAH-----DKLVSSLAAS 815 (834)
Q Consensus 795 ~~~~~~~l~~h-----~~~V~~lafs 815 (834)
+.+..+..... +..+.+++|.
T Consensus 376 ~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 376 DSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred ccCceeeccCCCCccccccccceehh
Confidence 99988843322 3345556654
No 322
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.44 E-value=7.8e-05 Score=87.06 Aligned_cols=259 Identities=10% Similarity=0.059 Sum_probs=150.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCC------Ce-E-EEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeecc
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------WI-T-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 635 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~------~I-~-~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~ 635 (834)
+..+++++.++.|+-+|..+++.+-.+..... .+ . .+.+. ++..++.++.++.|+.+|.++++...+.-..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 34667777889999999999988876643322 01 0 11111 2267888889999999999988754332221
Q ss_pred CCC----Ce-EEEEEccCCCcEEEEEe---------CCCcEEEEECCCCceeeEeecCCC--------------------
Q 003279 636 HST----TV-MSLDFHPSKEDLLCSCD---------NNSEIRYWSINNGSCAGVFKCQSG-------------------- 681 (834)
Q Consensus 636 h~~----~V-~sl~fspdg~~llasgs---------~Dg~I~lwDl~s~~~i~~~~~~~~-------------------- 681 (834)
... .+ .+..+.. . +++.++ .++.|..+|..+|+.+..+.....
T Consensus 140 ~~~~~~~~i~ssP~v~~--~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (488)
T cd00216 140 DQVPPGYTMTGAPTIVK--K-LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG 216 (488)
T ss_pred CCcCcceEecCCCEEEC--C-EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence 110 01 1122221 2 333443 367899999999999888765211
Q ss_pred -e-eEEEEecCCCEEEEEEcCC------------------eEEEEECCCCeEEEEEeC--CCCC---E-EEEEEc----C
Q 003279 682 -A-TQMRFQPRLGRILAAAIEN------------------YISILDVETQVCRLKLQG--HKNQ---V-HSVCWN----T 731 (834)
Q Consensus 682 -i-~~l~~sp~g~~ll~~s~dg------------------~I~iwDl~t~~~~~~l~~--h~~~---I-~sl~~s----p 731 (834)
+ ....+.+.++.+++++.++ .|.-+|.++++.+..+.. |... . ....+. -
T Consensus 217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~ 296 (488)
T cd00216 217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPK 296 (488)
T ss_pred CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence 0 1244555667888887665 799999999999887653 2110 0 001111 1
Q ss_pred CCC---EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE------------------EcCCeE
Q 003279 732 SGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI------------------GCYETL 789 (834)
Q Consensus 732 dg~---~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sg------------------s~dg~I 789 (834)
++. ++++++ +|.+..+|.++++ .+-..... ...++.+| ..++++ ..++.|
T Consensus 297 ~g~~~~~V~~g~~~G~l~ald~~tG~---~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l 368 (488)
T cd00216 297 DGKPVPAIVHAPKNGFFYVLDRTTGK---LISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGL 368 (488)
T ss_pred CCCeeEEEEEECCCceEEEEECCCCc---EeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEE
Confidence 333 455666 8999999999984 44333211 11123333 233332 235688
Q ss_pred EEEECCCCeEE-EeccC--C------CCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 790 ELWNMTENKTL-TLSAH--D------KLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 790 ~Iwdl~~~~~~-~l~~h--~------~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.-+|+.+++.+ ..... . .+...-...-.+.+|+.++.||.|+.+|
T Consensus 369 ~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 369 AALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred EEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 89999999887 22111 0 1111111112456788888899887664
No 323
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=6.6e-06 Score=95.13 Aligned_cols=183 Identities=15% Similarity=0.188 Sum_probs=129.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceee
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 631 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~ 631 (834)
.+.|+|++++ +++|+.|+.+|.|++++.... . .+...|... ..+|.+++|||.||+|.|..+.+.+. ..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~-~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE-IT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc-ce
Confidence 3558888887 679999999999999986543 2 333345444 55899999999999999999887664 23
Q ss_pred eeccCCCCeEEEEEccC----CCcEEEEEeCCCcEEEEECC---CCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEE
Q 003279 632 TFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSIN---NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 704 (834)
Q Consensus 632 ~~~~h~~~V~sl~fspd----g~~llasgs~Dg~I~lwDl~---s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~ 704 (834)
.+ ....++.+|+++|+ ....+++|+..| +.++.-+ ....+..-...+.|.++.|.-+ +++-..|-.|+
T Consensus 108 ~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~---lIAWand~Gv~ 182 (846)
T KOG2066|consen 108 QY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN---LIAWANDDGVK 182 (846)
T ss_pred eE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc---EEEEecCCCcE
Confidence 22 34578999999998 233566888777 7776532 2223323334678999999743 66666677799
Q ss_pred EEECCCCeEEEEEeCCCCC------EEEEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003279 705 ILDVETQVCRLKLQGHKNQ------VHSVCWNTSGEYLASVSDELVRVWSIGS 751 (834)
Q Consensus 705 iwDl~t~~~~~~l~~h~~~------I~sl~~spdg~~LasgsDg~I~IwDl~s 751 (834)
|||+.+...+..+...... ...+.|.++. .|+.|-..+|+|..++.
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGDSVKICSIKK 234 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCCeEEEEEEec
Confidence 9999998887776643332 2467887655 45566666788888873
No 324
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.42 E-value=2.6e-07 Score=61.94 Aligned_cols=27 Identities=41% Similarity=0.685 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhc
Q 003279 10 KMLDVYIYDYLLKRKLHASAKAFQTEG 36 (834)
Q Consensus 10 ~~L~~yiy~yl~k~~~~~~A~~~~~e~ 36 (834)
+.||.+|||||+++||.+||++|.+|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 479999999999999999999999985
No 325
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.40 E-value=0.00023 Score=77.06 Aligned_cols=256 Identities=9% Similarity=0.091 Sum_probs=159.0
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC----------CCeEEEEecCCCCceeeeec--cCC----
Q 003279 574 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFT--GHS---- 637 (834)
Q Consensus 574 g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~----------Dg~I~IWDl~s~~~~i~~~~--~h~---- 637 (834)
+.|+|+|.++++.+..+.. +..-.+..+|+++.+++++. .-.|.+||..+-........ .|.
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999999998877753 22345778999999887642 34799999987543221111 111
Q ss_pred CCeEEEEEccCCCcEEEEE-eCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEE
Q 003279 638 TTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRL 715 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasg-s~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~-t~~~~~ 715 (834)
.....+.++.+++++++.- +---.|.|.|+..++.+..+...+...-.-. . ...|.+.|.||.+..+.+. .|+...
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~-~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPS-G-NRGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEE-E-TTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEec-C-CCceEEEecCCceEEEEECCCCCEeE
Confidence 2233457778877665432 3345788999999999888876543322222 2 3568899999999999887 454432
Q ss_pred EE----eCCCCCE-EEEEEcCCC-CEEEEEeCCeEEEEEcCCCCCceeEEEeecC----------CCceEEEEEeCCCCE
Q 003279 716 KL----QGHKNQV-HSVCWNTSG-EYLASVSDELVRVWSIGSGSKGECIHELSCT----------GNKFHSCVFHPTFPS 779 (834)
Q Consensus 716 ~l----~~h~~~I-~sl~~spdg-~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~----------~~~I~svafspdg~~ 779 (834)
+. .....++ ..-+++..+ .+++...+|.|+-.|+..... .....+... .+...-+++++....
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~-~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSA-KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSE-EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcc-cccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 22 1122222 234455444 455544499999999887632 222222211 122345788887776
Q ss_pred EEEEEcC--------C--eEEEEECCCCeEEEeccCCCCeEEEEEeCCCC-EEEEE-ecCCcEEEeC
Q 003279 780 LLVIGCY--------E--TLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASA-SHDKCVKIWK 834 (834)
Q Consensus 780 L~sgs~d--------g--~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~-~LaSg-s~DG~I~IWd 834 (834)
|++.-.. + .|.+||+.+++.+....-+.++.+|..+.+.+ +|++. ..++.|.|||
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 6664221 1 68899999999985555556788999999877 66554 4578999986
No 326
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.40 E-value=2.6e-05 Score=88.70 Aligned_cols=205 Identities=15% Similarity=0.126 Sum_probs=133.9
Q ss_pred cEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC---C-CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCC
Q 003279 575 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---D-RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 650 (834)
Q Consensus 575 ~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~---D-g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~ 650 (834)
.+.+-|.+ +.....+..-...+..-+|+|++..++..+. . ..++++|+.++..... ....+.-...+|+|||+
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i--~~~~g~~~~P~fspDG~ 250 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI--LNFNGNNGAPAFSPDGS 250 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee--eccCCccCCccCCCCCC
Confidence 34444444 5555566556667888899999887665532 2 4699999998764221 22334455678999999
Q ss_pred cEEEEEeCCCc--EEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEEeCCCCCEE
Q 003279 651 DLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVH 725 (834)
Q Consensus 651 ~llasgs~Dg~--I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d-g--~I~iwDl~t~~~~~~l~~h~~~I~ 725 (834)
.++++...||. |+++|+..+.........+.-..-.|+|+|++++.++.. | .|.++|++..... .+......-.
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~~~~~ 329 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSGGGNS 329 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-EeeccCCCCc
Confidence 99999888875 666788777644422233334467899999999988764 3 5888888876543 2322333333
Q ss_pred EEEEcCCCCEEEEEe--CCe--EEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003279 726 SVCWNTSGEYLASVS--DEL--VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 787 (834)
Q Consensus 726 sl~~spdg~~Lasgs--Dg~--I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg 787 (834)
...|+|||++|+..+ +|. |.+.|+.++.. +..+ ..........|.+++..++..+..+
T Consensus 330 ~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~---~~~l-t~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 330 NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK---IRIL-TSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred CccCCCCCCEEEEEeccCCceeeEEeccCCCCc---EEEc-cccccCCCCCcCCCCceEEEeccCC
Confidence 789999999999888 554 77777776632 2222 2233344557888888777665544
No 327
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=4.6e-05 Score=88.87 Aligned_cols=207 Identities=14% Similarity=0.245 Sum_probs=140.9
Q ss_pred EECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC-----cEEEEECCCC-----
Q 003279 601 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNG----- 670 (834)
Q Consensus 601 ~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg-----~I~lwDl~s~----- 670 (834)
+|++.+..++.|+.+|.|.+++-. -..+..+..+...|...-|.-++..+|++.+.|+ .|++||++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 456788899999999988887654 2334666667666444445555556666666554 5899998643
Q ss_pred -cee---eEeec-----CCCeeEEEEecCCCEEEEEEcCCeEEEEECC----CCeEEEEEeCCCCCEEEEEEcCCCCE-E
Q 003279 671 -SCA---GVFKC-----QSGATQMRFQPRLGRILAAAIENYISILDVE----TQVCRLKLQGHKNQVHSVCWNTSGEY-L 736 (834)
Q Consensus 671 -~~i---~~~~~-----~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~----t~~~~~~l~~h~~~I~sl~~spdg~~-L 736 (834)
.++ +.+.+ ..++.+++++.+-..+++|..+|.|..+.-+ .+....-......+|+.+++..++.. +
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 233 22321 4568889999999999999999999998532 12222222235679999999988887 5
Q ss_pred EEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-Eec-cCCCCeEEE
Q 003279 737 ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-AHDKLVSSL 812 (834)
Q Consensus 737 asgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~-~h~~~V~~l 812 (834)
+++....|.+|.+.... .....+..++..+.|..+++....+++++. ..|++|+.+..... .+. +|......+
T Consensus 188 Fv~Tt~~V~~y~l~gr~--p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~~~~~ 262 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRT--PSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKEMLVF 262 (933)
T ss_pred EEEecceeEEEEecCCC--cceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEEEEEE
Confidence 55557789999998432 345557788889999999887764555544 47999998865544 555 555544433
No 328
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.39 E-value=0.00044 Score=70.86 Aligned_cols=258 Identities=11% Similarity=0.071 Sum_probs=140.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEE
Q 003279 563 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 642 (834)
Q Consensus 563 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~s 642 (834)
-|++++.|+..|.+++.+.++|.....+.....-=......+++..+..++.|++.+..|..+... +...+...+...+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~c-VykskcgG~~f~s 140 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGC-VYKSKCGGGTFVS 140 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccce-EEecccCCceecc
Confidence 467899999999999999999987766643322222344566889999999999999999998654 4433333333334
Q ss_pred EEEccCCCcEEEEEeCCCcEEEEECCCC--ceeeEeecCCCeeE--EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 003279 643 LDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKCQSGATQ--MRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 718 (834)
Q Consensus 643 l~fspdg~~llasgs~Dg~I~lwDl~s~--~~i~~~~~~~~i~~--l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~ 718 (834)
-+..|-...++ .+...|.|.-...+.. ..+..+....++.. ++. +..+..++.||.+.-+| ..|+.+..+.
T Consensus 141 P~i~~g~~sly-~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~ 215 (354)
T KOG4649|consen 141 PVIAPGDGSLY-AAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPA 215 (354)
T ss_pred ceecCCCceEE-EEeccceEEEEccCCCCcceehhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeec
Confidence 45555323233 4444666666666655 23333333333322 222 34566777788888888 6666666544
Q ss_pred CCCCCEE-EEEEc-CCCCEEEEEeCCe---------EEEEEcCCCCCceeEEEeecCCCceEEEEEeC-C---CCEEEEE
Q 003279 719 GHKNQVH-SVCWN-TSGEYLASVSDEL---------VRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-T---FPSLLVI 783 (834)
Q Consensus 719 ~h~~~I~-sl~~s-pdg~~LasgsDg~---------I~IwDl~s~~~~~~i~~~~~~~~~I~svafsp-d---g~~L~sg 783 (834)
..++|. .-+-+ |....|+.+.++. -.+|...++ ...+...... ....++. . .++|..+
T Consensus 216 -t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g---~t~~vy~~p~---l~F~~h~~~~S~~~ll~~~ 288 (354)
T KOG4649|consen 216 -TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSG---TTLHVYLSPK---LRFDLHSPGISYPKLLRRS 288 (354)
T ss_pred -CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCC---cEEEEEeCcc---cceeccCCCCcchhhhhhh
Confidence 333432 12222 3334444444332 234554444 1111111100 0112211 1 2456778
Q ss_pred EcCCeEEEEECCCCeEEEeccCCCCeEEE---EE------eC--CCCEEEEEecCCcEEEeC
Q 003279 784 GCYETLELWNMTENKTLTLSAHDKLVSSL---AA------ST--VNGMVASASHDKCVKIWK 834 (834)
Q Consensus 784 s~dg~I~Iwdl~~~~~~~l~~h~~~V~~l---af------sp--dg~~LaSgs~DG~I~IWd 834 (834)
+.||++.|.-.... ......|.+.+-.+ .. +| -+.+|+.|+.|..|+-||
T Consensus 289 s~dgkv~il~~~~s-l~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cld 349 (354)
T KOG4649|consen 289 SGDGKVMILMTSKS-LAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLD 349 (354)
T ss_pred cCCCcEEEEEeccc-ccccccCCCccceEEEeecCcccccCCeEEccEEEEEEccCeEEEEe
Confidence 88998888743322 22223333322222 11 12 024577788999999986
No 329
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.38 E-value=0.00033 Score=81.85 Aligned_cols=228 Identities=14% Similarity=0.102 Sum_probs=133.9
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEeccCCCC--eEEEEECC--CCCEEEEEe---------CCCeEEEEecCCCCceee
Q 003279 565 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--ITDVRFSP--SLSRLATSS---------ADRTVRVWDTENPDYSLR 631 (834)
Q Consensus 565 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~--I~~l~fsp--dg~~Latgs---------~Dg~I~IWDl~s~~~~i~ 631 (834)
..++.++.++.|+.+|.++++.+-.+...... -..+.-+| .+..++.++ .++.|..+|..+++...+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 57788889999999999999999776543321 00111111 124455553 368899999998875443
Q ss_pred eeccCCC-------------------Ce-EEEEEccCCCcEEEEEeCCC------------------cEEEEECCCCcee
Q 003279 632 TFTGHST-------------------TV-MSLDFHPSKEDLLCSCDNNS------------------EIRYWSINNGSCA 673 (834)
Q Consensus 632 ~~~~h~~-------------------~V-~sl~fspdg~~llasgs~Dg------------------~I~lwDl~s~~~i 673 (834)
....... .| ...++.+.+. +++.++.++ .|..+|+++++.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 3221110 01 1233444444 444554444 7999999999999
Q ss_pred eEeecCCC-e------eEEEEe----cCCC---EEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 003279 674 GVFKCQSG-A------TQMRFQ----PRLG---RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 739 (834)
Q Consensus 674 ~~~~~~~~-i------~~l~~s----p~g~---~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasg 739 (834)
..+..... . ....+. -++. .+++++.+|.++.+|.++++.+...... ...++.+| +..++..
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~ 345 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLGA 345 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEcc
Confidence 88764211 1 111111 1232 5777888999999999999988765421 11223333 2222211
Q ss_pred ------------------eCCeEEEEEcCCCCCceeEEEeecCC--------CceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003279 740 ------------------SDELVRVWSIGSGSKGECIHELSCTG--------NKFHSCVFHPTFPSLLVIGCYETLELWN 793 (834)
Q Consensus 740 ------------------sDg~I~IwDl~s~~~~~~i~~~~~~~--------~~I~svafspdg~~L~sgs~dg~I~Iwd 793 (834)
.++.|..+|+.++ +.+-...... .........-.+..|++++.|+.|+.+|
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG---~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTG---KVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred ccccccCcccccCCCCCCCceEEEEEeCCCC---cEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 1567888888887 3333333220 1111111122456788999999999999
Q ss_pred CCCCeEE
Q 003279 794 MTENKTL 800 (834)
Q Consensus 794 l~~~~~~ 800 (834)
.++|+.+
T Consensus 423 ~~tG~~l 429 (488)
T cd00216 423 ATTGKEL 429 (488)
T ss_pred CCCCcee
Confidence 9999988
No 330
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.30 E-value=0.00019 Score=76.79 Aligned_cols=193 Identities=12% Similarity=0.124 Sum_probs=136.7
Q ss_pred CeEEEEEccCCCcEEEEEeCCC-cEEEEECCCCceeeEeecCCC---eeEEEEecCCCEEEEEEc-----CCeEEEEECC
Q 003279 639 TVMSLDFHPSKEDLLCSCDNNS-EIRYWSINNGSCAGVFKCQSG---ATQMRFQPRLGRILAAAI-----ENYISILDVE 709 (834)
Q Consensus 639 ~V~sl~fspdg~~llasgs~Dg-~I~lwDl~s~~~i~~~~~~~~---i~~l~~sp~g~~ll~~s~-----dg~I~iwDl~ 709 (834)
....++.+|.....++.+-.-| ...+||..+++....+..... .-..+|+++|++|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 3456788897777887887666 578899999998887765333 235789999999998865 3789999999
Q ss_pred -CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-------------------eEEEEEcCCCCCceeEEE--e--ecCC
Q 003279 710 -TQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-------------------LVRVWSIGSGSKGECIHE--L--SCTG 765 (834)
Q Consensus 710 -t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg-------------------~I~IwDl~s~~~~~~i~~--~--~~~~ 765 (834)
+...+.++..|.-....+.+.|||+.|+++..| .+.+.|..++ +.+.. + ..|.
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG---~ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG---ALLEQVELPPDLHQ 162 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC---ceeeeeecCccccc
Confidence 568888888888788899999999877776422 2444555665 33333 3 3366
Q ss_pred CceEEEEEeCCCCEEEEEEcCC-------eEEEEECCCC-eEEE-----eccCCCCeEEEEEeCCCCEEEEE-ecCCcEE
Q 003279 766 NKFHSCVFHPTFPSLLVIGCYE-------TLELWNMTEN-KTLT-----LSAHDKLVSSLAASTVNGMVASA-SHDKCVK 831 (834)
Q Consensus 766 ~~I~svafspdg~~L~sgs~dg-------~I~Iwdl~~~-~~~~-----l~~h~~~V~~lafspdg~~LaSg-s~DG~I~ 831 (834)
..|..+++.++|..++..-..+ -|.+++.... ..+. ...-.+.|-+|+++.++.++++. -.-|.+.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA 242 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence 7899999999998655544433 3444444332 1111 12345789999999999877554 4678899
Q ss_pred EeC
Q 003279 832 IWK 834 (834)
Q Consensus 832 IWd 834 (834)
+||
T Consensus 243 ~~d 245 (305)
T PF07433_consen 243 VWD 245 (305)
T ss_pred EEE
Confidence 995
No 331
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.30 E-value=0.00091 Score=76.08 Aligned_cols=90 Identities=10% Similarity=0.084 Sum_probs=71.1
Q ss_pred eEEEEEcCCCCCceeEEEe-ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEE
Q 003279 743 LVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMV 821 (834)
Q Consensus 743 ~I~IwDl~s~~~~~~i~~~-~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~L 821 (834)
...+|++...+. .++... ......+.+++++|+...++.|+.||.|.+||...+.... ..+.-.++.++|+|+|.+|
T Consensus 237 d~ciYE~~r~kl-qrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~-~ka~~~P~~iaWHp~gai~ 314 (545)
T PF11768_consen 237 DSCIYECSRNKL-QRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL-AKAEFIPTLIAWHPDGAIF 314 (545)
T ss_pred EEEEEEeecCce-eEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee-eeecccceEEEEcCCCcEE
Confidence 355677765432 333322 2456789999999999999999999999999998775443 3455678999999999999
Q ss_pred EEEecCCcEEEeC
Q 003279 822 ASASHDKCVKIWK 834 (834)
Q Consensus 822 aSgs~DG~I~IWd 834 (834)
++|+.-|.|.+||
T Consensus 315 ~V~s~qGelQ~FD 327 (545)
T PF11768_consen 315 VVGSEQGELQCFD 327 (545)
T ss_pred EEEcCCceEEEEE
Confidence 9999999999998
No 332
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.29 E-value=0.0001 Score=83.07 Aligned_cols=261 Identities=13% Similarity=0.082 Sum_probs=139.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC--------
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-------- 625 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s-------- 625 (834)
.|+++.|.++..-|++|...|.|.||.....+... ......-....+.+- ...++.-.|-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 48999999999999999999999999765433221 000011111111110 00111122233321
Q ss_pred CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC---------CCeeEEEEec-----CC
Q 003279 626 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---------SGATQMRFQP-----RL 691 (834)
Q Consensus 626 ~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~---------~~i~~l~~sp-----~g 691 (834)
+-.+...+....++|++++.+.-| +++.|..+|.+.|.|++....+..-... ..++++.|.. |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 112334455567899999998654 8889999999999999988777664332 2477787763 22
Q ss_pred ---CEEEEEEcCCeEEEEECC--C-Ce----EEEEEeCCCCCEEEEE-EcCC---------------------CCEEEEE
Q 003279 692 ---GRILAAAIENYISILDVE--T-QV----CRLKLQGHKNQVHSVC-WNTS---------------------GEYLASV 739 (834)
Q Consensus 692 ---~~ll~~s~dg~I~iwDl~--t-~~----~~~~l~~h~~~I~sl~-~spd---------------------g~~Lasg 739 (834)
-.+++|+..|.+.+|.+. . +. .......+.++|..|. |+.+ .-+++++
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 358888889999999764 1 21 1122224666776665 3221 1267778
Q ss_pred eCCeEEEEEcCCCCCceeEEEeecCCCceEEEEE-----eCCCCEEEEEEcCCeEEEEECCCCeEE-Eecc----CCCCe
Q 003279 740 SDELVRVWSIGSGSKGECIHELSCTGNKFHSCVF-----HPTFPSLLVIGCYETLELWNMTENKTL-TLSA----HDKLV 809 (834)
Q Consensus 740 sDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svaf-----spdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~----h~~~V 809 (834)
++..++|+...+. +..+...........+++ ...+..|++...+|.|++|.+..-+.+ .... ....+
T Consensus 233 Se~~irv~~~~~~---k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~ 309 (395)
T PF08596_consen 233 SESDIRVFKPPKS---KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRL 309 (395)
T ss_dssp -SSEEEEE-TT------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHH
T ss_pred cccceEEEeCCCC---cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccc
Confidence 8999999999876 444443322223334445 235677888899999999999998776 2222 22345
Q ss_pred EEEEEeCCCCEEEEEecC
Q 003279 810 SSLAASTVNGMVASASHD 827 (834)
Q Consensus 810 ~~lafspdg~~LaSgs~D 827 (834)
...+++++|..++-.+..
T Consensus 310 ~~ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 310 SSSSISRNGDIFYWTGPS 327 (395)
T ss_dssp TT-EE-TTS-EEEE-SSS
T ss_pred cccEECCCCCEEEEeCcc
Confidence 567778888877666543
No 333
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.29 E-value=8.7e-05 Score=85.16 Aligned_cols=273 Identities=11% Similarity=0.114 Sum_probs=152.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE-EeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCce
Q 003279 551 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 629 (834)
Q Consensus 551 H~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~ 629 (834)
|...|.--+++..+++|+.|+.-|.+++|+-..+.... ...+..+.+..+..+++..++|.|+..|.|.++-+......
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 34445556677788999999999999999966654432 22234556667778888888999999999999988763321
Q ss_pred eee-----eccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC-----ceeeEeecCCCeeEEEEecCCCEEEEEEc
Q 003279 630 LRT-----FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGATQMRFQPRLGRILAAAI 699 (834)
Q Consensus 630 i~~-----~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~-----~~i~~~~~~~~i~~l~~sp~g~~ll~~s~ 699 (834)
-.. -..|...|++++|++++.. +++|+..|.|.+-.+... .....+...+.|..+.+.. .++++++.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k-~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl 188 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMK-LYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTL 188 (726)
T ss_pred cceeeccccccCCceEEEEEecccccE-EeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhh
Confidence 111 1237789999999999875 559999999999888762 1222333456676666653 34444443
Q ss_pred CCeEEEEECCCCeEEEEEe-CCCC-CEEEEEEcCC-----CCEEEEEeCCeEEEEEcCCCCCceeEEEeec---------
Q 003279 700 ENYISILDVETQVCRLKLQ-GHKN-QVHSVCWNTS-----GEYLASVSDELVRVWSIGSGSKGECIHELSC--------- 763 (834)
Q Consensus 700 dg~I~iwDl~t~~~~~~l~-~h~~-~I~sl~~spd-----g~~LasgsDg~I~IwDl~s~~~~~~i~~~~~--------- 763 (834)
-.. .+++.+.+.....-+ ..++ .-...||-|. ...|+++--| .|+|..+-.......+.++.
T Consensus 189 ~r~-~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~G~V~~Thqfk~ala~~p~p~ 266 (726)
T KOG3621|consen 189 TRC-ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFAGEVIKTHQFKDALARPPAPE 266 (726)
T ss_pred hhh-heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeecceeEEEeeehhhhhccCCCCc
Confidence 332 344444322110000 0111 1233455443 2344444433 56676543211111111110
Q ss_pred --CC----------------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEe
Q 003279 764 --TG----------------NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 764 --~~----------------~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs 825 (834)
+. -....+.+- .+..+++-+.-| |+|+|..+..++........|.+++.+ ++-|+.-.
T Consensus 267 i~~~s~esp~~~~~~~~~q~ls~~k~~~l-~~~~vLa~te~G-iyv~d~~~~~v~l~se~~~DI~dVs~~--~neiFvL~ 342 (726)
T KOG3621|consen 267 IPIRSLESPNQRSLPSGTQHLSLSKSSTL-HSDRVLAWTEVG-IYVFDSNNSQVYLWSEGGHDILDVSHC--GNEIFVLN 342 (726)
T ss_pred ccCCCcCCccccCCCCCccccccceeEEe-ecceEEEeecce-EEEEEeccceEEEeecCCCceeEEeec--CceEEEEe
Confidence 00 001111111 122445555554 888998888777665555667666544 44444445
Q ss_pred cCCcEEE
Q 003279 826 HDKCVKI 832 (834)
Q Consensus 826 ~DG~I~I 832 (834)
.||.+++
T Consensus 343 ~d~~l~~ 349 (726)
T KOG3621|consen 343 LDRGLKV 349 (726)
T ss_pred cCCceeE
Confidence 5554443
No 334
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.29 E-value=2.9e-05 Score=88.34 Aligned_cols=189 Identities=12% Similarity=0.197 Sum_probs=128.0
Q ss_pred eeeeccCCCCeEEEEEccCCCcEEEEEeCC---CcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc-CC--eE
Q 003279 630 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YI 703 (834)
Q Consensus 630 i~~~~~h~~~V~sl~fspdg~~llasgs~D---g~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg--~I 703 (834)
...+......+..-+|+|++..+.+..-.. ..+.++|+++++...............|+|||++|+.+.. || .|
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccE
Confidence 344444556677888999988776654333 3599999999988888877777888899999999887765 44 68
Q ss_pred EEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003279 704 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 779 (834)
Q Consensus 704 ~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~ 779 (834)
+++|+..+.... +....+.-+.-.|+|||++|+..+ .| .|.+++.+.... ..+......-..-.|+|||++
T Consensus 265 y~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~----~riT~~~~~~~~p~~SpdG~~ 339 (425)
T COG0823 265 YLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV----TRLTFSGGGNSNPVWSPDGDK 339 (425)
T ss_pred EEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce----eEeeccCCCCcCccCCCCCCE
Confidence 888998876333 544444445779999999999888 34 577777776532 233323333337789999999
Q ss_pred EEEEEcC-C--eEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEE
Q 003279 780 LLVIGCY-E--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 823 (834)
Q Consensus 780 L~sgs~d-g--~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaS 823 (834)
|+..+.. | .|.+.|+.++.......+.......+|.++++.++.
T Consensus 340 i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 340 IVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMF 386 (425)
T ss_pred EEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEE
Confidence 9888753 3 477777766653433334444444555555554443
No 335
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.00037 Score=81.58 Aligned_cols=195 Identities=13% Similarity=0.169 Sum_probs=136.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCC-eEEEEECCCCCEEEEEeCCC-----eEEEEecCCCC
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSPSLSRLATSSADR-----TVRVWDTENPD 627 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~-I~~l~fspdg~~Latgs~Dg-----~I~IWDl~s~~ 627 (834)
.|+| |++.+..+|.|+.+|.|.+.+ ...+.+..+..+... |..+-...+..+|++.+.|+ .|+|||++.-+
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4444 567788999999999999987 445666777777777 44444444446888877765 48999987431
Q ss_pred -----cee---eeec----cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC---C-C-ceeeEeecCCCeeEEEEecC
Q 003279 628 -----YSL---RTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---N-G-SCAGVFKCQSGATQMRFQPR 690 (834)
Q Consensus 628 -----~~i---~~~~----~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~---s-~-~~i~~~~~~~~i~~l~~sp~ 690 (834)
.++ +.+. ....++.+++.+.+ -..+|+|-.+|.|.++.=+ . + +.........+|+.+.+..+
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 122 2221 13467888899887 4467788889999988521 1 1 22223334678999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeE-EEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003279 691 LGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 752 (834)
Q Consensus 691 g~~ll~~s~dg~I~iwDl~t~~~-~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~ 752 (834)
+..++.+.....|.+|.+....+ ...+..|...+.|..+++...-++++++..|.+||....
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGR 245 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCc
Confidence 88866677778899999885443 444677888899999987666577777788999998754
No 336
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.25 E-value=3.5e-06 Score=61.83 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=35.9
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 580 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd 580 (834)
+.+.++.+|.+.|++|+|+|++.+|++|+.|+.|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45788999999999999999999999999999999997
No 337
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.24 E-value=3.7e-06 Score=88.61 Aligned_cols=158 Identities=14% Similarity=0.210 Sum_probs=117.4
Q ss_pred EEEcCC--CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC----Cceee
Q 003279 558 CHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP----DYSLR 631 (834)
Q Consensus 558 l~fSpd--g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~----~~~i~ 631 (834)
|+|+-+ |-. ++.+.+-.|-+-|++++-.- .|. ..+.|.++.|.-.+.+++.|+..|.|.++|++.. .++..
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 456532 323 44556678889998886543 332 5677999999988999999999999999999865 34333
Q ss_pred eeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce---eeEeecCCC---eeEEEEecCCCEEEEEEcCCeEEE
Q 003279 632 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFKCQSG---ATQMRFQPRLGRILAAAIENYISI 705 (834)
Q Consensus 632 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~---i~~~~~~~~---i~~l~~sp~g~~ll~~s~dg~I~i 705 (834)
.+ -|...|+++.........|.+.+.+|.|++||++.-++ +..+..+.. ..-+.+.+..+.+++++.|...+|
T Consensus 294 rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRi 372 (425)
T KOG2695|consen 294 RL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRI 372 (425)
T ss_pred EE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEE
Confidence 33 48899999987763445666788899999999998776 666664322 223445667888999999999999
Q ss_pred EECCCCeEEEEEeC
Q 003279 706 LDVETQVCRLKLQG 719 (834)
Q Consensus 706 wDl~t~~~~~~l~~ 719 (834)
|.++.+....++..
T Consensus 373 Wsl~~ghLl~tipf 386 (425)
T KOG2695|consen 373 WSLDSGHLLCTIPF 386 (425)
T ss_pred EecccCceeeccCC
Confidence 99999988887764
No 338
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=2.1e-05 Score=90.81 Aligned_cols=255 Identities=13% Similarity=0.082 Sum_probs=144.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC-Cceeeee
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP-DYSLRTF 633 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~-~~~i~~~ 633 (834)
++++||+|..-.|+.|-.-|.+.+|...+.+.-.....|..+|..+.|+++|..++|+..-|.|.+|.++-- ......+
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~ 141 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI 141 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence 567999999989999999999999998888877777899999999999999999999999999999988732 2111222
Q ss_pred ccCC--C--CeEEEEEccCCCcE------EEEEeCCCcEE-EEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCe
Q 003279 634 TGHS--T--TVMSLDFHPSKEDL------LCSCDNNSEIR-YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 702 (834)
Q Consensus 634 ~~h~--~--~V~sl~fspdg~~l------lasgs~Dg~I~-lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~ 702 (834)
..|. . ...|...++++..+ .++|+ +..+- .++.+.....+...+ . -.|+|..|++++.+|+
T Consensus 142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgD-e~alD~~fnwk~~~a~rs~~k-s------gv~~g~~F~~~~~~Gt 213 (1416)
T KOG3617|consen 142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGD-ESALDEPFNWKESLAERSDEK-S------GVPKGTEFLFAGKSGT 213 (1416)
T ss_pred hhhHhhceeeEEEEecCCChHHhhhhhhhhccCc-hhhhcccccCccchhhccccc-c------CCCCCcEEEEEcCCce
Confidence 2232 2 23455556664322 23333 33332 444332211111111 1 1467888999999999
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCce--eEEEeecCCCceEEEEEeCCCCE
Q 003279 703 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE--CIHELSCTGNKFHSCVFHPTFPS 779 (834)
Q Consensus 703 I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~--~i~~~~~~~~~I~svafspdg~~ 779 (834)
|+..|-.. ++....+. .+. .-+-|.+...-|++.. +-++.+|-+......+ +...+.+..+. ..|.
T Consensus 214 Vyyvdq~g-~~~~V~k~-dS~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~Gg-------rqGg- 282 (1416)
T KOG3617|consen 214 VYYVDQNG-RQRTVHKL-DSE-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGG-------RQGG- 282 (1416)
T ss_pred EEEEcCCC-cEEEEEEc-cch-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCC-------ccCc-
Confidence 99888543 33222221 111 1234444333333333 3333333322211000 00111111100 0122
Q ss_pred EEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 780 LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 780 L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++++-..|.+ +..+.. -......+.|++++..+..|+.|...|.|.+|.
T Consensus 283 iA~sEssGvL-----r~~eKy-g~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~ 331 (1416)
T KOG3617|consen 283 IACSESSGVL-----RKSEKY-GLELGEGILCMCYGEKEIRLWAGTKEGNVTIWL 331 (1416)
T ss_pred cccccccccc-----cCCcch-hhhcCCceEEEEEeccceEEEecccCCcEEEee
Confidence 3333333311 111111 112345688888888888888888888888884
No 339
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.20 E-value=0.00025 Score=85.71 Aligned_cols=227 Identities=14% Similarity=0.204 Sum_probs=136.1
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce
Q 003279 593 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 672 (834)
Q Consensus 593 h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~ 672 (834)
..+.|.++.|.-+..-++.+..+|.|.+-|..+... .....-...|.+++|+||.. +++..+.+.+|.+-+ .+..+
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~--eivg~vd~GI~aaswS~Dee-~l~liT~~~tll~mT-~~f~~ 142 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLEL--EIVGNVDNGISAASWSPDEE-LLALITGRQTLLFMT-KDFEP 142 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccce--eeeeeccCceEEEeecCCCc-EEEEEeCCcEEEEEe-ccccc
Confidence 346899999999999999999999999998887543 33344567899999999977 454555556555433 22222
Q ss_pred eeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC----------eEEEEEeCCCCCEEEEEEcCCCCEEEEEe--
Q 003279 673 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ----------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-- 740 (834)
Q Consensus 673 i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~----------~~~~~l~~h~~~I~sl~~spdg~~Lasgs-- 740 (834)
+..... ...-.+. ..++.++....=.-|.-..+ ........-.+.=++|+|--||.|+++..
T Consensus 143 i~E~~L-----~~d~~~~-sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~ 216 (1265)
T KOG1920|consen 143 IAEKPL-----DADDERK-SKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVE 216 (1265)
T ss_pred hhcccc-----ccccccc-cccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEe
Confidence 222111 0000111 11223332221111111111 10000001112235799999999999843
Q ss_pred ---C-CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc---CCeEEEEECCCCe---EE-EeccCCCCe
Q 003279 741 ---D-ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC---YETLELWNMTENK---TL-TLSAHDKLV 809 (834)
Q Consensus 741 ---D-g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~---dg~I~Iwdl~~~~---~~-~l~~h~~~V 809 (834)
+ ..|+|||-+ + ..-..-....+.-.+++|-|.|..+++... ++.|.+|.-..-+ .. .+......|
T Consensus 217 ~~~~~RkirV~drE-g---~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~v 292 (1265)
T KOG1920|consen 217 SETGTRKIRVYDRE-G---ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEV 292 (1265)
T ss_pred ccCCceeEEEeccc-c---hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccch
Confidence 4 689999976 3 111122223344568899999998888754 4479999865432 22 333344459
Q ss_pred EEEEEeCCCCEEEE---EecCCcEEEe
Q 003279 810 SSLAASTVNGMVAS---ASHDKCVKIW 833 (834)
Q Consensus 810 ~~lafspdg~~LaS---gs~DG~I~IW 833 (834)
..++|+.++.+||+ +.....|++|
T Consensus 293 e~L~Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 293 EELAWNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred heeeecCCCCceeeeecccccceEEEE
Confidence 99999999999987 4444459998
No 340
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.20 E-value=4.2e-06 Score=61.35 Aligned_cols=39 Identities=36% Similarity=0.548 Sum_probs=37.0
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
++++.++.+|.+.|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 341
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.19 E-value=0.00013 Score=84.66 Aligned_cols=215 Identities=11% Similarity=0.056 Sum_probs=135.4
Q ss_pred EcCCCCEEEEE-eCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC----eEEEEecCCCCceeeeec
Q 003279 560 FSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR----TVRVWDTENPDYSLRTFT 634 (834)
Q Consensus 560 fSpdg~~Lasg-s~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg----~I~IWDl~s~~~~i~~~~ 634 (834)
+++||+.+... -..+.+.+.|.++.+....+..-. ....+.++++++++++.+.+. ++...+..+... +..+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~-~vvfn 277 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDW-VVVFN 277 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCce-EEEEc
Confidence 45566655332 234667788888887777765433 446789999999998886432 333333322111 11111
Q ss_pred cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-----CceeeEeecCCCeeEEEEecCCCEEEEEEc-CCeEEEEEC
Q 003279 635 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-----GSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDV 708 (834)
Q Consensus 635 ~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s-----~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl 708 (834)
-. .+ .++.++|++.++ .++.|.++|..+ .+.+..+........+.++|||+++++++. ++.|.|+|+
T Consensus 278 i~--~i--ea~vkdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv 350 (635)
T PRK02888 278 IA--RI--EEAVKAGKFKTI---GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDV 350 (635)
T ss_pred hH--HH--HHhhhCCCEEEE---CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEC
Confidence 00 00 023456665554 267899999998 567888888899999999999999988876 799999999
Q ss_pred CCCeE------------EEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCC------CCC-ceeEEEeecCCCce
Q 003279 709 ETQVC------------RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS------GSK-GECIHELSCTGNKF 768 (834)
Q Consensus 709 ~t~~~------------~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s------~~~-~~~i~~~~~~~~~I 768 (834)
.+.+. +.+..- .......+|+++|..+.+.. |..|..|++.. ++. ...+..+..|-.+.
T Consensus 351 ~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pg 429 (635)
T PRK02888 351 RKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPG 429 (635)
T ss_pred hhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccc
Confidence 87542 333332 22334678999998777777 99999999876 211 13344444443332
Q ss_pred EEE-----EEeCCCCEEEEEE
Q 003279 769 HSC-----VFHPTFPSLLVIG 784 (834)
Q Consensus 769 ~sv-----afspdg~~L~sgs 784 (834)
... .-.++|++|++..
T Consensus 430 h~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 430 HNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred eeeecCCCcCCCCCCEEEEcc
Confidence 222 2356677766643
No 342
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.14 E-value=0.0004 Score=79.40 Aligned_cols=221 Identities=12% Similarity=0.147 Sum_probs=121.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE-ecCCCCc
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW-DTENPDY 628 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW-Dl~s~~~ 628 (834)
...-....+.++|+|++++++ .||...||.....+.... +.-..++|.+.+ .+|+-...++|.|+ ++....
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~- 101 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEV- 101 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-T-
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCcccc-
Confidence 344457889999999999985 478888998555555432 334578898854 57777678899996 443222
Q ss_pred eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 003279 629 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDV 708 (834)
Q Consensus 629 ~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl 708 (834)
...+.. ...+..|-. |. +|+..+ ++.|.+||+.+++.+..+.... |..+.|++++.+++..+.+ .++|++.
T Consensus 102 -~k~i~~-~~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 102 -VKSIKL-PFSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp -T------SS-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred -ceEEcC-CcccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 112221 122344432 55 444444 4589999999999999998653 8999999999988888754 5666554
Q ss_pred CCC-----------eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003279 709 ETQ-----------VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 777 (834)
Q Consensus 709 ~t~-----------~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg 777 (834)
+.. .....+..-...|.+.+|..+ -++++... .|+. +-.+ ....+..-..++.-+.+.+..
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~-~lkY--l~~G----e~~~i~~ld~~~yllgy~~~~ 244 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN-HLKY--LVNG----ETGIIAHLDKPLYLLGYLPKE 244 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT-EEEE--EETT----EEEEEEE-SS--EEEEEETTT
T ss_pred cchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC-eEEE--EEcC----CcceEEEcCCceEEEEEEccC
Confidence 322 012222222567899999876 33443334 7776 4444 222333335677778888877
Q ss_pred CEEEEEEcCCeEEEEECC
Q 003279 778 PSLLVIGCYETLELWNMT 795 (834)
Q Consensus 778 ~~L~sgs~dg~I~Iwdl~ 795 (834)
+.+++...++.|..+.+.
T Consensus 245 ~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 245 NRLYLIDRDGNVISYELD 262 (443)
T ss_dssp TEEEEE-TT--EEEEE--
T ss_pred CEEEEEECCCCEEEEEEC
Confidence 788888888888887764
No 343
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.00076 Score=76.25 Aligned_cols=220 Identities=13% Similarity=0.110 Sum_probs=154.8
Q ss_pred eEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC---CCeEEEEecCCCCcee
Q 003279 555 VESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSL 630 (834)
Q Consensus 555 V~sl~fSpdg~~L-asgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~---Dg~I~IWDl~s~~~~i 630 (834)
-.++++++++..+ ++...++.|.+.|..+.+....+.--. ....++++++++.+..+.. +++|.+.|..+.....
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 3467888888854 444456899999988877776664332 5678999999987777665 6888888888766533
Q ss_pred eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceee-----EeecCCCeeEEEEecCCCEEEEEEcC---Ce
Q 003279 631 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-----VFKCQSGATQMRFQPRLGRILAAAIE---NY 702 (834)
Q Consensus 631 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~-----~~~~~~~i~~l~~sp~g~~ll~~s~d---g~ 702 (834)
. ...-..+ ..+++.|++..++++-..++.|.++|........ .+........+.+.+++.++++.... +.
T Consensus 155 ~-~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 155 T-IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred E-EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 4 3332334 8999999999888777789999999987766553 23334556789999999987777665 59
Q ss_pred EEEEECCCCeEEEEEeCCCC-CEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003279 703 ISILDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 777 (834)
Q Consensus 703 I~iwDl~t~~~~~~l~~h~~-~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg 777 (834)
+.+.|..++........-.. ....+.++|+|.++.+.. .+.+.+.|..+......+.........+..+++.+..
T Consensus 233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 99999999876665221112 466789999999998886 5789999988863322222222223345556665544
No 344
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.11 E-value=0.0016 Score=72.83 Aligned_cols=229 Identities=18% Similarity=0.192 Sum_probs=135.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-c-------C---------CCCeEEEEECCCCCEEEEEeC
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-E-------H---------TQWITDVRFSPSLSRLATSSA 614 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~-------h---------~~~I~~l~fspdg~~Latgs~ 614 (834)
...+....|||+|++||... ++.|++++..++....... + - -+.-..+.|+||+++||....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 56788999999999999886 5899999988775443221 1 0 122357889999999887643
Q ss_pred C-C-----------------------------------eEEEEecCCCCce-eeee---ccCCCCeEEEEEccCCCcEEE
Q 003279 615 D-R-----------------------------------TVRVWDTENPDYS-LRTF---TGHSTTVMSLDFHPSKEDLLC 654 (834)
Q Consensus 615 D-g-----------------------------------~I~IWDl~s~~~~-i~~~---~~h~~~V~sl~fspdg~~lla 654 (834)
| . .+.|+|+.+++.. +... ..-...+..+.|.+++..+++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 2 1 2333444443321 1111 223456788899998773443
Q ss_pred -EEeCCC---cEEEEECCCCceeeEeec--CC---CeeEEEEe-cCCCEEEEEE-cCC--eEEEEECCCCeEEEEEeCCC
Q 003279 655 -SCDNNS---EIRYWSINNGSCAGVFKC--QS---GATQMRFQ-PRLGRILAAA-IEN--YISILDVETQVCRLKLQGHK 721 (834)
Q Consensus 655 -sgs~Dg---~I~lwDl~s~~~i~~~~~--~~---~i~~l~~s-p~g~~ll~~s-~dg--~I~iwDl~t~~~~~~l~~h~ 721 (834)
....+. .+.++|..++.+...+.. .. ......+. +++..++..+ .+| .|++++...+... .+....
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~ 279 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGD 279 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCc
Confidence 333332 577778887766544432 11 12355555 6666655554 455 5777788777644 555455
Q ss_pred CCEEE-EEEcCCCCEEEEEe--CC----eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003279 722 NQVHS-VCWNTSGEYLASVS--DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 785 (834)
Q Consensus 722 ~~I~s-l~~spdg~~Lasgs--Dg----~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~ 785 (834)
-.|.. +.|++++..|+..+ ++ .|+..++..+ ..+..+.+.......+.|+|++++++....
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 66754 67888877665444 22 5666666612 244455554444479999999998876554
No 345
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.10 E-value=0.0027 Score=68.21 Aligned_cols=225 Identities=14% Similarity=0.145 Sum_probs=132.9
Q ss_pred CCCCEEEEEeCCCcEEEEeCC-CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeee--------
Q 003279 562 PDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-------- 632 (834)
Q Consensus 562 pdg~~Lasgs~Dg~I~IWd~~-t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~-------- 632 (834)
..++.|+.|+.+| |+++++. ..+..... +...|..+...++-+.|++-+ |+.++++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4577999999988 9999983 33333333 233399999999877776664 599999998753321110
Q ss_pred -----eccCCCCeEEEE--EccCCCcEEEEEeCCCcEEEEECCCC-----ceeeEeecCCCeeEEEEecCCCEEEEEEcC
Q 003279 633 -----FTGHSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 633 -----~~~h~~~V~sl~--fspdg~~llasgs~Dg~I~lwDl~s~-----~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d 700 (834)
.......+..++ -...+...++++. ...|.+|..... +..+.+.....+..++|. ++.++++. .
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~-~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT-S 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe-C
Confidence 111223444444 1233344454443 558888877652 566777888999999999 45566655 5
Q ss_pred CeEEEEECCCCeEEEEEeCC------------CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCce
Q 003279 701 NYISILDVETQVCRLKLQGH------------KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF 768 (834)
Q Consensus 701 g~I~iwDl~t~~~~~~l~~h------------~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I 768 (834)
+...++|+.++.....+... ..++..+.. +++.+|++ .|..-.+.|.... ... ...+.- ...+
T Consensus 157 ~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~~~~g~fv~~~G~-~~r-~~~i~W-~~~p 231 (275)
T PF00780_consen 157 KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-YDNIGVFVNKNGE-PSR-KSTIQW-SSAP 231 (275)
T ss_pred CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-ecceEEEEcCCCC-cCc-ccEEEc-CCch
Confidence 56888999976544333211 123333333 34566654 4444444454332 211 112222 2244
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEe
Q 003279 769 HSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL 802 (834)
Q Consensus 769 ~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l 802 (834)
..+++ ..++|++.+. +.|.||++.+++.+..
T Consensus 232 ~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~ 262 (275)
T PF00780_consen 232 QSVAY--SSPYLIAFSS-NSIEVRSLETGELVQT 262 (275)
T ss_pred hEEEE--ECCEEEEECC-CEEEEEECcCCcEEEE
Confidence 55555 3457777666 4599999999988743
No 346
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.09 E-value=0.0028 Score=68.75 Aligned_cols=239 Identities=12% Similarity=0.133 Sum_probs=144.0
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeccCCC-------CeEEEEECCCCCEEEEEeC--CCe
Q 003279 557 SCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSPSLSRLATSSA--DRT 617 (834)
Q Consensus 557 sl~fSpdg~~Lasgs----------~Dg~I~IWd~~t~~~~~~l~~h~~-------~I~~l~fspdg~~Latgs~--Dg~ 617 (834)
.+.++||++.+++++ ..-.|.+||..+......+.-..+ ....+.++.|++++++... --.
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 467899999888753 345799999999988875532221 2234677888888776543 456
Q ss_pred EEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC-CCceeeEeec-----CCC-eeEEEEecC
Q 003279 618 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKC-----QSG-ATQMRFQPR 690 (834)
Q Consensus 618 I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~-s~~~i~~~~~-----~~~-i~~l~~sp~ 690 (834)
|.|.|+...+. +..+... + |.-..|.++.-|.+-+.||.+....+. .|+....... ..+ +..-.+...
T Consensus 120 VtVVDl~~~kv-v~ei~~P-G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~ 194 (342)
T PF06433_consen 120 VTVVDLAAKKV-VGEIDTP-G---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD 194 (342)
T ss_dssp EEEEETTTTEE-EEEEEGT-S---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred EEEEECCCCce-eeeecCC-C---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence 88888887554 3333311 1 222234333345566669999998887 4555432211 111 234455666
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEE--EEEeCC------C----CCEEEEEEcCCCCEEEEEe----CC-------eEEEE
Q 003279 691 LGRILAAAIENYISILDVETQVCR--LKLQGH------K----NQVHSVCWNTSGEYLASVS----DE-------LVRVW 747 (834)
Q Consensus 691 g~~ll~~s~dg~I~iwDl~t~~~~--~~l~~h------~----~~I~sl~~spdg~~Lasgs----Dg-------~I~Iw 747 (834)
+..++..+.+|.|+-.|+...... ..+..- . +.-.-+++++....|++.. ++ .|-+|
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~ 274 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY 274 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence 778888999999999999876432 222211 1 1122367776555554432 22 68888
Q ss_pred EcCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCeEEEecc
Q 003279 748 SIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENKTLTLSA 804 (834)
Q Consensus 748 Dl~s~~~~~~i~~~~~~~~~I~svafspdg~-~L~sgs-~dg~I~Iwdl~~~~~~~l~~ 804 (834)
|+.++ +.+..+.. ...+.++.++.+.+ .|++.+ .++.|.+||..+++.+....
T Consensus 275 D~~t~---krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 275 DLKTH---KRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp ETTTT---EEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred ECCCC---eEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 98887 66666654 24577899998775 555554 46799999999999885443
No 347
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.09 E-value=0.00042 Score=70.99 Aligned_cols=151 Identities=12% Similarity=-0.018 Sum_probs=117.1
Q ss_pred EEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 003279 643 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN 722 (834)
Q Consensus 643 l~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~ 722 (834)
+...++.+.+++.|+..+.+...|..+|+.+..-.....+.+-+.- -+++++.|+..|.+++.+.++|.....+..-..
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence 3344566778889999999999999999998887777777765555 467899999999999999999987777664332
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003279 723 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 797 (834)
Q Consensus 723 ~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~ 797 (834)
--......+++.++.+++ |+..+..|.++. .++...++.+....+-++.|-...|+++...|.|.--..+..
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~---~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTY---GCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEeccccc---ceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 223445678899999999 999999999887 788888888887778888885556777777776655555544
No 348
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.08 E-value=0.0021 Score=67.72 Aligned_cols=200 Identities=13% Similarity=0.182 Sum_probs=116.0
Q ss_pred EEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEeccC-CCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 545 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h-~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
-+.+.+-...|..++|+|+.+ ++++....+.|..++. +|+.+..+.-. .+....|++..++.++++.-.++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 456677777799999999755 5666667788888886 47787776433 35688999988887777766799999999
Q ss_pred cCCCCce--e---eee-----ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC---CceeeEee---------cCC
Q 003279 623 TENPDYS--L---RTF-----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---GSCAGVFK---------CQS 680 (834)
Q Consensus 623 l~s~~~~--i---~~~-----~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s---~~~i~~~~---------~~~ 680 (834)
+...... . ..+ ..++..+-.++|++.++.++++.- ..-..+|.+.. ...+.... .-.
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE-~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE-RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE-SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC-CCChhhEEEccccCccceeeccccccccccceec
Confidence 8542211 1 111 124566899999999887886643 44455555543 21111111 124
Q ss_pred CeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCC---------CCEEEEEEcCCCCEEEEEeCCeEEEE
Q 003279 681 GATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHK---------NQVHSVCWNTSGEYLASVSDELVRVW 747 (834)
Q Consensus 681 ~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~h~---------~~I~sl~~spdg~~LasgsDg~I~Iw 747 (834)
.+..+.++|..+.+++-+. +..|.++| .+|+.+..+.-.. .....|+|+++|++++++--+..++|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 5788999998777776665 57888899 5566555443222 24679999999987777666666655
No 349
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.08 E-value=0.00047 Score=78.33 Aligned_cols=133 Identities=8% Similarity=0.143 Sum_probs=92.1
Q ss_pred EEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEE----eCCCc----EEEEECCCCce----eeEeecCCCeeEE
Q 003279 618 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC----DNNSE----IRYWSINNGSC----AGVFKCQSGATQM 685 (834)
Q Consensus 618 I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasg----s~Dg~----I~lwDl~s~~~----i~~~~~~~~i~~l 685 (834)
+.++.+...+..+..+........++.|+-..++.+.+. +.+|. ..+|++..++. +..+...+.+.++
T Consensus 186 l~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~c 265 (545)
T PF11768_consen 186 LHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICC 265 (545)
T ss_pred EEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEE
Confidence 444444443333333333344557777876555555543 22343 34566654432 3344567889999
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003279 686 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 752 (834)
Q Consensus 686 ~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 752 (834)
+++|+...++.|+.||.|.+||...+..... ...-.++.++|+|+|.++++|+ .|.+.+||+.-.
T Consensus 266 a~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 266 ARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 9999999999999999999999988744333 2445678999999999999999 699999998754
No 350
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.03 E-value=0.0016 Score=68.60 Aligned_cols=199 Identities=12% Similarity=0.171 Sum_probs=114.9
Q ss_pred eeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC--CCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003279 632 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVE 709 (834)
Q Consensus 632 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~--~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~ 709 (834)
.+.+-...+..|+|+|+.+.++++....+.|..++.. |+.++.+... .....|++..++.++++--.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4445556799999999989999999999999999975 7888887753 558889998776555555458999999884
Q ss_pred CC------eEEEEEe-----CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCC--CCCceeEEE------eecCCCceE
Q 003279 710 TQ------VCRLKLQ-----GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS--GSKGECIHE------LSCTGNKFH 769 (834)
Q Consensus 710 t~------~~~~~l~-----~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s--~~~~~~i~~------~~~~~~~I~ 769 (834)
.. .....+. .++..+..++|++.+..|+++. ..-..||.+.. ......+.. .......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 32 1112221 2445689999999877776666 55556666654 111111111 111334578
Q ss_pred EEEEeCCCCEEEEEEc-CCeEEEEECCCCeEE---Eecc--C-----CCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 770 SCVFHPTFPSLLVIGC-YETLELWNMTENKTL---TLSA--H-----DKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 770 svafspdg~~L~sgs~-dg~I~Iwdl~~~~~~---~l~~--h-----~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
.++++|....|++-+. ...|.++| .+|+++ .+.. | -...-.|+|.++|++.++ +.-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 8999998766665555 45888899 555555 2222 1 124778999999966555 466666554
No 351
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.02 E-value=0.0046 Score=72.76 Aligned_cols=187 Identities=10% Similarity=0.031 Sum_probs=115.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccCC-CCeE---E-------EEECCCCCEEEEEeCCCeEEEEecCCCCceeee
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWIT---D-------VRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~-~~I~---~-------l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~ 632 (834)
+..|++++.++.|+-+|..+++.+-.+.... ..+. + +++ .+..++.++.|+.|..+|..+++.....
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4477777788899999999999887664211 1111 1 122 2346778889999999999988764432
Q ss_pred ecc-CC--CCeEE-EEEccCCCcEEEEEe-----CCCcEEEEECCCCceeeEeecCCC----------------------
Q 003279 633 FTG-HS--TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSG---------------------- 681 (834)
Q Consensus 633 ~~~-h~--~~V~s-l~fspdg~~llasgs-----~Dg~I~lwDl~s~~~i~~~~~~~~---------------------- 681 (834)
-.. +. ..+.+ ..+. + ..+++..+ .+|.|..+|.++|+.+..+.....
T Consensus 147 ~~~~~~~~~~~tssP~v~-~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVV-K-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred ccccccccccccCCcEEE-C-CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 221 11 11211 1111 2 33443322 268999999999998876653111
Q ss_pred ----------e-eEEEEecCCCEEEEEEcC-----C-----------eEEEEECCCCeEEEEEeCCCCCE---------E
Q 003279 682 ----------A-TQMRFQPRLGRILAAAIE-----N-----------YISILDVETQVCRLKLQGHKNQV---------H 725 (834)
Q Consensus 682 ----------i-~~l~~sp~g~~ll~~s~d-----g-----------~I~iwDl~t~~~~~~l~~h~~~I---------~ 725 (834)
+ ..+.+.+..+.++.+..+ + .|.-.|+++|+.+..+......+ .
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 0 124667767777776622 1 68888999999988877522211 1
Q ss_pred EEEEcCCCC---EEEEEe-CCeEEEEEcCCCCC
Q 003279 726 SVCWNTSGE---YLASVS-DELVRVWSIGSGSK 754 (834)
Q Consensus 726 sl~~spdg~---~Lasgs-Dg~I~IwDl~s~~~ 754 (834)
-+.+..+|+ .++.+. +|.+++.|-++++.
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 122334665 666666 99999999998843
No 352
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.99 E-value=0.0011 Score=73.06 Aligned_cols=209 Identities=12% Similarity=0.064 Sum_probs=119.0
Q ss_pred eEEEEecCCCCceeeeeccCCCCeEEEEE---ccC---CCcEEEEEeC----------CCcEEEEECCCC-----c--ee
Q 003279 617 TVRVWDTENPDYSLRTFTGHSTTVMSLDF---HPS---KEDLLCSCDN----------NSEIRYWSINNG-----S--CA 673 (834)
Q Consensus 617 ~I~IWDl~s~~~~i~~~~~h~~~V~sl~f---spd---g~~llasgs~----------Dg~I~lwDl~s~-----~--~i 673 (834)
.|++.|..+....-.........+++++. ..+ ...++++|.. .|.|.++++... + .+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 57777776654322211223344555443 222 1456655542 288999999884 2 23
Q ss_pred eEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe-EEEEEe-CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcC
Q 003279 674 GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV-CRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG 750 (834)
Q Consensus 674 ~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~-~~~~l~-~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~ 750 (834)
......+.|++++-. +++ ++++.++.|.+|++...+ ....-. .....+.++... +.++++|. ...|.++.+.
T Consensus 83 ~~~~~~g~V~ai~~~--~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF--NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEESS-EEEEEEE--TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEE
T ss_pred EEEeecCcceEhhhh--CCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEE
Confidence 344457888888877 345 455556999999998776 333222 233466666655 55888888 6666666554
Q ss_pred CCCCceeEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-------C--eEE--EeccCCCCeEEE---EE
Q 003279 751 SGSKGECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE-------N--KTL--TLSAHDKLVSSL---AA 814 (834)
Q Consensus 751 s~~~~~~i~~~--~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~-------~--~~~--~l~~h~~~V~~l---af 814 (834)
... ..+..+ ......++++.|-+++..++++..+|.|.++.... + +.. ........|+++ ++
T Consensus 158 ~~~--~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l 235 (321)
T PF03178_consen 158 EEN--NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSL 235 (321)
T ss_dssp TTT--E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--S
T ss_pred ccC--CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEe
Confidence 321 222222 23355678888886667899999999999987753 2 222 223345667777 44
Q ss_pred eCC--CC------EEEEEecCCcEEE
Q 003279 815 STV--NG------MVASASHDKCVKI 832 (834)
Q Consensus 815 spd--g~------~LaSgs~DG~I~I 832 (834)
.|. +. .++.++.+|.|.+
T Consensus 236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp S--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eecCCCCcccccceEEEEecCCEEEE
Confidence 452 22 4788889998863
No 353
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.97 E-value=0.0029 Score=69.78 Aligned_cols=214 Identities=13% Similarity=0.101 Sum_probs=125.3
Q ss_pred CcEEEEeCCCCeEEEEecc-CCCCeEEE---EECCC----CCEEEEEeC----------CCeEEEEecCCC-----Ccee
Q 003279 574 KKAVLWCTESFTVKSTLEE-HTQWITDV---RFSPS----LSRLATSSA----------DRTVRVWDTENP-----DYSL 630 (834)
Q Consensus 574 g~I~IWd~~t~~~~~~l~~-h~~~I~~l---~fspd----g~~Latgs~----------Dg~I~IWDl~s~-----~~~i 630 (834)
..|+|.|..+.+.+..+.- ....|+++ .|..+ ..+|++|+. .|.|.++++... +...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3588888888877755532 22334443 34432 467777653 289999999874 2222
Q ss_pred eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc-eeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003279 631 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 709 (834)
Q Consensus 631 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~-~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~ 709 (834)
.......++|++++-. ++.++++. ++.|.+|++...+ ..........+..+.....++++++|.....|.++..+
T Consensus 82 i~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEE
T ss_pred EEEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEE
Confidence 2334457889999876 34455443 5899999998887 55555544444444444446799999988888877443
Q ss_pred C-CeEEEEE--eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC-------C-CceeEEEeecCCCceEEE---EEe
Q 003279 710 T-QVCRLKL--QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG-------S-KGECIHELSCTGNKFHSC---VFH 774 (834)
Q Consensus 710 t-~~~~~~l--~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~-------~-~~~~i~~~~~~~~~I~sv---afs 774 (834)
. ...+..+ ......++++.|-++++.++++. +|.|.++..... . ....+..+.. +..|+++ .+.
T Consensus 158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~l-g~~v~~~~~~~l~ 236 (321)
T PF03178_consen 158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHL-GDIVNSFRRGSLI 236 (321)
T ss_dssp TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS
T ss_pred ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEEC-CCccceEEEEEee
Confidence 2 2222222 22456788999986666777777 999999988631 1 1122333332 4556666 444
Q ss_pred C--CCC------EEEEEEcCCeEEEE
Q 003279 775 P--TFP------SLLVIGCYETLELW 792 (834)
Q Consensus 775 p--dg~------~L~sgs~dg~I~Iw 792 (834)
| .+. .++.++.+|.|.+.
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ecCCCCcccccceEEEEecCCEEEEE
Confidence 5 222 48888889988743
No 354
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.94 E-value=5.2e-06 Score=93.63 Aligned_cols=198 Identities=13% Similarity=0.119 Sum_probs=127.0
Q ss_pred CCCeEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCeE--EEEeccCCCCeEEEEECC-CCCEEEEEe----CCCeEEEEe
Q 003279 552 TSKVESCHFSPDG--KLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSP-SLSRLATSS----ADRTVRVWD 622 (834)
Q Consensus 552 ~~~V~sl~fSpdg--~~Lasgs~Dg~I~IWd~~t~~~--~~~l~~h~~~I~~l~fsp-dg~~Latgs----~Dg~I~IWD 622 (834)
...+.|+++.-+. .++++|..+|.|.+-....... .....+|...+++++|++ |...||.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 3457788776544 4788999999999987654322 345567889999999998 556676663 256899999
Q ss_pred cCCCC----ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc-eeeEeecCCCeeEEEEecCCCEEEEE
Q 003279 623 TENPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 623 l~s~~----~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~-~i~~~~~~~~i~~l~~sp~g~~ll~~ 697 (834)
+.+.- .......+......+++|..+ ..++.+|.....+.++|++... ....+. ...+..+.+.|-....++.
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs~~~~~svn-Tk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQSLDSVSSVN-TKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccccCCCccccccccccccCccccccccC-cchhhcccccchhhhhhhhhhhhhhhhhh-hhhcccceecCCCCCceec
Confidence 98641 111111223455678899866 4567788888899999998322 111111 1245566677733335566
Q ss_pred EcCCeEEEEEC-CCCe-EEEEEeCC----CCCEEEEEEcCCCC-EEEEEe--CCeEEEEEcCC
Q 003279 698 AIENYISILDV-ETQV-CRLKLQGH----KNQVHSVCWNTSGE-YLASVS--DELVRVWSIGS 751 (834)
Q Consensus 698 s~dg~I~iwDl-~t~~-~~~~l~~h----~~~I~sl~~spdg~-~Lasgs--Dg~I~IwDl~s 751 (834)
..||.|.+||. ++-+ ++..+... ...+..++|.|... .+++.. .++|++||+..
T Consensus 214 ~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 214 NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 66999999994 3322 22222211 22488999999543 445555 56999999864
No 355
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.93 E-value=0.0012 Score=74.62 Aligned_cols=207 Identities=14% Similarity=0.125 Sum_probs=123.0
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe--cc------CCCCeEEEEECC-----CC-
Q 003279 541 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EE------HTQWITDVRFSP-----SL- 606 (834)
Q Consensus 541 ~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l--~~------h~~~I~~l~fsp-----dg- 606 (834)
.|.+...+....++|++++.|.=| ++|.|..+|.+.|.|++....+..- .. ....|+++.|.- |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 477888888889999999998555 9999999999999999887777552 22 344688888862 32
Q ss_pred --CEEEEEeCCCeEEEEecCC---CCcee---eeeccCCCCeEEEE-EccCC--------------------CcEEEEEe
Q 003279 607 --SRLATSSADRTVRVWDTEN---PDYSL---RTFTGHSTTVMSLD-FHPSK--------------------EDLLCSCD 657 (834)
Q Consensus 607 --~~Latgs~Dg~I~IWDl~s---~~~~i---~~~~~h~~~V~sl~-fspdg--------------------~~llasgs 657 (834)
-+|++|...|.+.+|.+.- +.+.+ .....+.+.|..|. |+.+. +.++++++
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 4688999999999998752 22211 12224567777665 32221 12444444
Q ss_pred CCCcEEEEECCCCceeeEeecCCC--eeEEEEe-----cCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC----CCEEE
Q 003279 658 NNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQ-----PRLGRILAAAIENYISILDVETQVCRLKLQGHK----NQVHS 726 (834)
Q Consensus 658 ~Dg~I~lwDl~s~~~i~~~~~~~~--i~~l~~s-----p~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~----~~I~s 726 (834)
+..|+++...+.+...... ... +..+++. ..+..|++...+|.|++|.+..-+.+..+.-+. ..+..
T Consensus 234 -e~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ 311 (395)
T PF08596_consen 234 -ESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSS 311 (395)
T ss_dssp -SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT
T ss_pred -ccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccc
Confidence 7789999998887766555 332 2234442 345668888889999999999988887776432 13345
Q ss_pred EEEcCCCCEEEEEeCCeEEEEEcC
Q 003279 727 VCWNTSGEYLASVSDELVRVWSIG 750 (834)
Q Consensus 727 l~~spdg~~LasgsDg~I~IwDl~ 750 (834)
.+++++|..++-.+...+.++.+-
T Consensus 312 ssis~~Gdi~~~~gpsE~~l~sv~ 335 (395)
T PF08596_consen 312 SSISRNGDIFYWTGPSEIQLFSVW 335 (395)
T ss_dssp -EE-TTS-EEEE-SSSEEEEEEEE
T ss_pred cEECCCCCEEEEeCcccEEEEEEE
Confidence 677889998888776666666543
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.93 E-value=0.013 Score=66.81 Aligned_cols=209 Identities=12% Similarity=0.094 Sum_probs=111.8
Q ss_pred EEEcCCCCEEEEEeCC----------C-cEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC
Q 003279 558 CHFSPDGKLLATGGHD----------K-KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 626 (834)
Q Consensus 558 l~fSpdg~~Lasgs~D----------g-~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~ 626 (834)
++.+|.|..||....+ . .|.||+.. |+.+..+.-..+.|.++.|+.+ ..|++...||.+++||+...
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCc
Confidence 3445555555554333 2 48899854 5666665444488999999975 45666679999999998632
Q ss_pred C-c----eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc-eeeEe-ecCC---------CeeE-EEEec
Q 003279 627 D-Y----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVF-KCQS---------GATQ-MRFQP 689 (834)
Q Consensus 627 ~-~----~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~-~i~~~-~~~~---------~i~~-l~~sp 689 (834)
. . .+....-....+....+..+| +++.. .++.|.+.+-.... ..+.+ .... .... ..++.
T Consensus 112 ~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt-~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~ 188 (410)
T PF04841_consen 112 FQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLT-GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS 188 (410)
T ss_pred eeechhhhccccCcccccccccccCCCC--EEEEC-CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec
Confidence 2 0 011111111222222333233 33332 34444444322211 11111 0000 0111 23444
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-CCc
Q 003279 690 RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNK 767 (834)
Q Consensus 690 ~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-~~~ 767 (834)
+....+....++.+.+.+...... +. ..+++..+++||++++||.-. +|.+.|.+..-. +.+.++... ...
T Consensus 189 ~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~---~~~~e~~~~~~~~ 261 (410)
T PF04841_consen 189 DRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS---EKLCEFDTDSKSP 261 (410)
T ss_pred CcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc---ceeEEeecCcCCC
Confidence 555555555566666555433211 21 346899999999999999988 788888876544 444454443 345
Q ss_pred eEEEEEeCCCC
Q 003279 768 FHSCVFHPTFP 778 (834)
Q Consensus 768 I~svafspdg~ 778 (834)
...+.|.-+..
T Consensus 262 p~~~~WCG~da 272 (410)
T PF04841_consen 262 PKQMAWCGNDA 272 (410)
T ss_pred CcEEEEECCCc
Confidence 56777766643
No 357
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.93 E-value=0.023 Score=67.02 Aligned_cols=149 Identities=13% Similarity=0.087 Sum_probs=89.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEecc--CCC--CeEE-EEECCCCCEEEEEe------CCCeEEEEecCCCCceeee
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQ--WITD-VRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~--h~~--~I~~-l~fspdg~~Latgs------~Dg~I~IWDl~s~~~~i~~ 632 (834)
+..|+.++.|+.|.-.|.++|+.+-.... +.. .+++ .... ++ .|++++ .+|.|..+|.++++.....
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 34677788899999999999999866542 111 1111 1111 34 455443 2689999999987753332
Q ss_pred eccCC------------------------------CCeE-EEEEccCCCcEEEEEeC----CC-----------cEEEEE
Q 003279 633 FTGHS------------------------------TTVM-SLDFHPSKEDLLCSCDN----NS-----------EIRYWS 666 (834)
Q Consensus 633 ~~~h~------------------------------~~V~-sl~fspdg~~llasgs~----Dg-----------~I~lwD 666 (834)
..... ..+. .+.+.+..+.+++..++ ++ .|.-.|
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 21111 1111 23556654433333222 12 688889
Q ss_pred CCCCceeeEeec-CCC---------eeEEEEecCCC---EEEEEEcCCeEEEEECCCCeEE
Q 003279 667 INNGSCAGVFKC-QSG---------ATQMRFQPRLG---RILAAAIENYISILDVETQVCR 714 (834)
Q Consensus 667 l~s~~~i~~~~~-~~~---------i~~l~~sp~g~---~ll~~s~dg~I~iwDl~t~~~~ 714 (834)
+++|+....+.. +.. ..-+.+..+++ .++.+..+|.++++|.++++.+
T Consensus 278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 999999888774 111 12223334555 5668888999999999999876
No 358
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.88 E-value=0.0047 Score=66.27 Aligned_cols=216 Identities=13% Similarity=0.131 Sum_probs=125.3
Q ss_pred CCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceee---------
Q 003279 604 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--------- 674 (834)
Q Consensus 604 pdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~--------- 674 (834)
..++.|+.|+.+| |+++++.......... +...|..+...++-+.+++.+ |+.|+++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc--CCccEEEEchhhccccccccccccc
Confidence 3577899999998 9999994333222222 233499999998877666554 5999999987644333
Q ss_pred ------EeecCCCeeEEE--EecCCCEEEEEEcCCeEEEEECCCC-----eEEEEEeCCCCCEEEEEEcCCCCEEEEEeC
Q 003279 675 ------VFKCQSGATQMR--FQPRLGRILAAAIENYISILDVETQ-----VCRLKLQGHKNQVHSVCWNTSGEYLASVSD 741 (834)
Q Consensus 675 ------~~~~~~~i~~l~--~sp~g~~ll~~s~dg~I~iwDl~t~-----~~~~~l~~h~~~I~sl~~spdg~~LasgsD 741 (834)
.+....++...+ -...+...+++.....|.+|..... ....++. -...+.+++|. +..|+.+..
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC
Confidence 122223344444 2234556667777779988887653 3445554 45788899998 667888877
Q ss_pred CeEEEEEcCCCCCceeEEEeecC----------CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeE
Q 003279 742 ELVRVWSIGSGSKGECIHELSCT----------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVS 810 (834)
Q Consensus 742 g~I~IwDl~s~~~~~~i~~~~~~----------~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~ 810 (834)
+...+.|+.++.. ..+...... ..++..+.+ +++.+|++. +..-.+.|..+.... ....-...+.
T Consensus 157 ~~f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~~p~ 232 (275)
T PF00780_consen 157 KGFYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSSAPQ 232 (275)
T ss_pred CceEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCCCCcCcccEEEcCCchh
Confidence 7799999997643 222211111 122333333 334555432 333334454332221 1111233555
Q ss_pred EEEEeCCCCEEEEEecCCcEEEeC
Q 003279 811 SLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 811 ~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++++. ..||+..+.++ |-||+
T Consensus 233 ~~~~~--~pyli~~~~~~-iEV~~ 253 (275)
T PF00780_consen 233 SVAYS--SPYLIAFSSNS-IEVRS 253 (275)
T ss_pred EEEEE--CCEEEEECCCE-EEEEE
Confidence 66664 45777765544 88774
No 359
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.88 E-value=0.0061 Score=69.67 Aligned_cols=221 Identities=12% Similarity=0.076 Sum_probs=126.9
Q ss_pred CeEEEEECCCCCEEEEE-eCCC----eEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC----------C
Q 003279 596 WITDVRFSPSLSRLATS-SADR----TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----------S 660 (834)
Q Consensus 596 ~I~~l~fspdg~~Latg-s~Dg----~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D----------g 660 (834)
.+..++++|++++||.+ +..| .|+++|+.+++.....+.. .....+.|.+++..++++...+ .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 34468899999998865 3333 6999999987643333332 1223499999988888776433 2
Q ss_pred cEEEEECCCCcee--eEeec--CCC-eeEEEEecCCCEEEEEEcC----CeEEEEECCCC-----eEEEEEeCCCCCEEE
Q 003279 661 EIRYWSINNGSCA--GVFKC--QSG-ATQMRFQPRLGRILAAAIE----NYISILDVETQ-----VCRLKLQGHKNQVHS 726 (834)
Q Consensus 661 ~I~lwDl~s~~~i--~~~~~--~~~-i~~l~~sp~g~~ll~~s~d----g~I~iwDl~t~-----~~~~~l~~h~~~I~s 726 (834)
.|++|++.+.... ..+.. ... ...+..+++++++++.... ..+++.|+..+ ..........+....
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 4788888776433 34433 223 5678889999998876653 35888999874 333333323333333
Q ss_pred EEEcCCCCEEEEEe----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECC-CCe
Q 003279 727 VCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMT-ENK 798 (834)
Q Consensus 727 l~~spdg~~Lasgs----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg---~I~Iwdl~-~~~ 798 (834)
+... .+.+++.+. .+.|...++...........+..+...+.-..+...+.+|++...++ .|+++++. +..
T Consensus 283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 4433 444554443 34788888887653223334455555433344444555666555443 79999999 555
Q ss_pred EEEecc-CCCCeEEEEEeCCCC
Q 003279 799 TLTLSA-HDKLVSSLAASTVNG 819 (834)
Q Consensus 799 ~~~l~~-h~~~V~~lafspdg~ 819 (834)
...+.. -.+.|..+...+++.
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-S
T ss_pred EeeecCCcceEEeccCCCCCCC
Confidence 443332 334455665555554
No 360
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.85 E-value=5e-06 Score=93.82 Aligned_cols=197 Identities=18% Similarity=0.259 Sum_probs=135.0
Q ss_pred CCeEEEEECCCC--CEEEEEeCCCeEEEEecCCCCce-eeeeccCCCCeEEEEEccCCCcEEEEEe----CCCcEEEEEC
Q 003279 595 QWITDVRFSPSL--SRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCD----NNSEIRYWSI 667 (834)
Q Consensus 595 ~~I~~l~fspdg--~~Latgs~Dg~I~IWDl~s~~~~-i~~~~~h~~~V~sl~fspdg~~llasgs----~Dg~I~lwDl 667 (834)
..+.|+++..+. -++++|..+|.|.+-.+...... .....++....++++|.+-...+||+|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 346677766543 46888999999999988765443 4566778899999999987666776663 4668999999
Q ss_pred CCC--ceeeE--ee--cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcC-CCCEEEEE
Q 003279 668 NNG--SCAGV--FK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNT-SGEYLASV 739 (834)
Q Consensus 668 ~s~--~~i~~--~~--~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~-~~~~~l~~h~~~I~sl~~sp-dg~~Lasg 739 (834)
.++ .+... +. ...+..+++|..+.+.+++|.....+.++|++-. .....+ .+..+..+..+| .+.|+++.
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence 876 22221 11 2345678999988888888888999999999833 211111 234567788888 78888888
Q ss_pred eCCeEEEEE-cCCCCCceeEEEeecCC----CceEEEEEeCCCCE-EEEEEcC-CeEEEEECC
Q 003279 740 SDELVRVWS-IGSGSKGECIHELSCTG----NKFHSCVFHPTFPS-LLVIGCY-ETLELWNMT 795 (834)
Q Consensus 740 sDg~I~IwD-l~s~~~~~~i~~~~~~~----~~I~svafspdg~~-L~sgs~d-g~I~Iwdl~ 795 (834)
.|+.|.+|| .++-+ ..+..+.... ..+..++|.|...- +++...| ++|++||+.
T Consensus 215 ~dg~iAiwD~~rnie--npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 SDGDIAIWDTYRNIE--NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ccCceeeccchhhhc--cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 899999999 43332 1222222222 34888999997543 4444444 489999884
No 361
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.76 E-value=0.0096 Score=64.92 Aligned_cols=217 Identities=11% Similarity=0.045 Sum_probs=132.1
Q ss_pred EEEECCCCCEE-EEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee
Q 003279 599 DVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 677 (834)
Q Consensus 599 ~l~fspdg~~L-atgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~ 677 (834)
...|.++...| .+--..+.|.-|+..++.. ..+. +...+.++.....+. .|+++ +..+.+++.+++..+..+.
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--~~~~-~p~~~~~~~~~d~~g-~Lv~~--~~g~~~~~~~~~~~~t~~~ 102 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKK--RVFP-SPGGFSSGALIDAGG-RLIAC--EHGVRLLDPDTGGKITLLA 102 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCce--EEEE-CCCCcccceeecCCC-eEEEE--ccccEEEeccCCceeEEec
Confidence 34566666644 4444577899999886553 3333 223344544444434 44455 3456777776665533332
Q ss_pred c------CCCeeEEEEecCCCEEEEEEc-----------CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 003279 678 C------QSGATQMRFQPRLGRILAAAI-----------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 740 (834)
Q Consensus 678 ~------~~~i~~l~~sp~g~~ll~~s~-----------dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs 740 (834)
. ....+.+.+.|+|.+.+.... -|.|+.+|. .+..+..+..+-..-+.|+||||++.|+.+.
T Consensus 103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aD 181 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVAD 181 (307)
T ss_pred cccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEe
Confidence 1 234667888999776665444 134555565 4555666665556667999999998888777
Q ss_pred --CCeEEEEEcCC--CCCc--eeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCeEE-EeccCCCCeEEE
Q 003279 741 --DELVRVWSIGS--GSKG--ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSAHDKLVSSL 812 (834)
Q Consensus 741 --Dg~I~IwDl~s--~~~~--~~i~~~~~~~~~I~svafspdg~~L~sgs~dg-~I~Iwdl~~~~~~-~l~~h~~~V~~l 812 (834)
.+.|..|++.. +... .....+....+..-.++...+|.+.+++...+ .|.+|+.+ ++.+ .+.-....++++
T Consensus 182 T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~ 260 (307)
T COG3386 182 TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNP 260 (307)
T ss_pred CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccc
Confidence 57888888762 2111 11222333456667788888898665555554 99999999 6666 444444788888
Q ss_pred EEeC-CCCEEEE
Q 003279 813 AAST-VNGMVAS 823 (834)
Q Consensus 813 afsp-dg~~LaS 823 (834)
+|-- +.+.|+.
T Consensus 261 ~FgG~~~~~L~i 272 (307)
T COG3386 261 AFGGPDLNTLYI 272 (307)
T ss_pred eEeCCCcCEEEE
Confidence 8863 4444443
No 362
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.75 E-value=0.0038 Score=72.08 Aligned_cols=148 Identities=12% Similarity=0.093 Sum_probs=99.1
Q ss_pred cCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003279 500 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 579 (834)
Q Consensus 500 ~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IW 579 (834)
+..+.+++.|+..+.+.+|.......- .....+-.+.+..++.+++..++|.|+..|.|.|+
T Consensus 42 dst~~~l~~GsS~G~lyl~~R~~~~~~------------------~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ 103 (726)
T KOG3621|consen 42 DATEEYLAMGSSAGSVYLYNRHTGEMR------------------KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVF 103 (726)
T ss_pred ecCCceEEEecccceEEEEecCchhhh------------------cccccCccceEEEEEecchhHhhhhhcCCceEEee
Confidence 455688999999999999865544211 11112234556777889999899999999999999
Q ss_pred eCCCCeE-----EEEe-ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC---ceeeeeccCCCCeEEEEEccCCC
Q 003279 580 CTESFTV-----KSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---YSLRTFTGHSTTVMSLDFHPSKE 650 (834)
Q Consensus 580 d~~t~~~-----~~~l-~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~---~~i~~~~~h~~~V~sl~fspdg~ 650 (834)
-+..... +... ..|...|+|++|++++..|++|...|+|.+-.++... .....+....+.|.-|++.. .
T Consensus 104 ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~ 181 (726)
T KOG3621|consen 104 QLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--S 181 (726)
T ss_pred hhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--c
Confidence 7654221 1111 2478899999999999999999999999998887621 12334444567788887763 3
Q ss_pred cEEEEEeCCCcEEEEECCC
Q 003279 651 DLLCSCDNNSEIRYWSINN 669 (834)
Q Consensus 651 ~llasgs~Dg~I~lwDl~s 669 (834)
++|++.... ..+++++.
T Consensus 182 ~LLVStl~r--~~Lc~tE~ 198 (726)
T KOG3621|consen 182 YLLVSTLTR--CILCQTEA 198 (726)
T ss_pred eehHhhhhh--hheeecch
Confidence 355444332 33445443
No 363
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.70 E-value=0.012 Score=65.17 Aligned_cols=242 Identities=11% Similarity=0.120 Sum_probs=123.4
Q ss_pred eCCCCeEEEEeccCCCCeE-----EEEECCCCCEEEEEeC-CC--eEEEEecCCCCceeeeeccCC-CCeEEEEEccCCC
Q 003279 580 CTESFTVKSTLEEHTQWIT-----DVRFSPSLSRLATSSA-DR--TVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKE 650 (834)
Q Consensus 580 d~~t~~~~~~l~~h~~~I~-----~l~fspdg~~Latgs~-Dg--~I~IWDl~s~~~~i~~~~~h~-~~V~sl~fspdg~ 650 (834)
|..+|..+..+..+..... .=+|.+||+.|+.++. || .+++.|+.+++ +..+.... .......++++++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~--i~QLTdg~g~~~~g~~~s~~~~ 93 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE--ITQLTDGPGDNTFGGFLSPDDR 93 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E--EEE---SS-B-TTT-EE-TTSS
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE--EEECccCCCCCccceEEecCCC
Confidence 6778888877765443322 2356778877666554 55 56677777654 45554433 2233566778877
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEeecCCCee-EEEEe--cCCCEEEEEEc----------------------CCeEEE
Q 003279 651 DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQ--PRLGRILAAAI----------------------ENYISI 705 (834)
Q Consensus 651 ~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~-~l~~s--p~g~~ll~~s~----------------------dg~I~i 705 (834)
.+++.. .+..|+..|+.+.+....+..+.... ...|. .++..++..-. ...|..
T Consensus 94 ~~~Yv~-~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 94 ALYYVK-NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp EEEEEE-TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred eEEEEE-CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 665544 45689999999988777777655543 34453 34444333221 124777
Q ss_pred EECCCCeEEEEEeCCCCCEEEEEEcCCC-CEEEEEeCC-----eEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCCC
Q 003279 706 LDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVSDE-----LVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFP 778 (834)
Q Consensus 706 wDl~t~~~~~~l~~h~~~I~sl~~spdg-~~LasgsDg-----~I~IwDl~s~~~-~~~i~~~~~~~~~I~svafspdg~ 778 (834)
.|+.+++....+. ...++..+-|+|.. .+|+.|.+| .-+||-+++... ..+++.- .....+..=-|.+||.
T Consensus 173 idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 173 IDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHEFWVPDGS 250 (386)
T ss_dssp EETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS
T ss_pred EECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccccccCCCC
Confidence 8999887666665 56788999999954 455556644 237777765321 2233222 1233445557999998
Q ss_pred EEEEEEc-----CCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecC
Q 003279 779 SLLVIGC-----YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 779 ~L~sgs~-----dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~D 827 (834)
.|...+. +..|.-+|+.+++...+..- .....+-.++||+++|-=+.|
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE--
T ss_pred EEEEEeecCCCCceEEEeeCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCC
Confidence 8776543 33677788888766543222 234566667898887754444
No 364
>PRK10115 protease 2; Provisional
Probab=97.70 E-value=0.072 Score=64.89 Aligned_cols=238 Identities=10% Similarity=-0.007 Sum_probs=123.7
Q ss_pred eEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC------CeEEEEec
Q 003279 555 VESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDT 623 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~D-----g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D------g~I~IWDl 623 (834)
+..+.|+|||++|+.+... ..|++.|+.+++.+...-.... ..++|.+|++.|+....+ ..|+.+++
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 6678899999998876432 3688889988864322211211 469999998877665442 36888888
Q ss_pred CCCCc-eeeeeccCCCCeE-EEEEccCCCcEEEEEe--CCCcEEEEECC--CCceeeEeecCCCeeEEEEecCCCEEEEE
Q 003279 624 ENPDY-SLRTFTGHSTTVM-SLDFHPSKEDLLCSCD--NNSEIRYWSIN--NGSCAGVFKCQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 624 ~s~~~-~i~~~~~h~~~V~-sl~fspdg~~llasgs--~Dg~I~lwDl~--s~~~i~~~~~~~~i~~l~~sp~g~~ll~~ 697 (834)
.++.. ....+........ .+..+.++..+++.+. .++.+.+|+.. ++.....+.....+..-..+. +..++..
T Consensus 207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~ 285 (686)
T PRK10115 207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHY-QHRFYLR 285 (686)
T ss_pred CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeC-CCEEEEE
Confidence 87621 1223333233333 3333447776665443 34678898853 344333333333332222233 3445444
Q ss_pred EcC----CeEEEEECCCCeEEEEEeCC-C-CCEEEEEEcCCCCEEEEEe-CCe--EEEEEcCCCCCceeEEEee-cCCCc
Q 003279 698 AIE----NYISILDVETQVCRLKLQGH-K-NQVHSVCWNTSGEYLASVS-DEL--VRVWSIGSGSKGECIHELS-CTGNK 767 (834)
Q Consensus 698 s~d----g~I~iwDl~t~~~~~~l~~h-~-~~I~sl~~spdg~~Lasgs-Dg~--I~IwDl~s~~~~~~i~~~~-~~~~~ 767 (834)
+.. ..|...++........+..+ . ..|..+.+.. +.++++.. ++. +.+++...+ .+..+. .....
T Consensus 286 tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~----~~~~l~~~~~~~ 360 (686)
T PRK10115 286 SNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTR----EVIGIAFDDPAY 360 (686)
T ss_pred EcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCC----ceEEecCCCCce
Confidence 432 24555565522112233334 3 3677888873 33344444 664 555554332 222222 11222
Q ss_pred eEEEEEe--CCCC-EEEEEEcC---CeEEEEECCCCeEE
Q 003279 768 FHSCVFH--PTFP-SLLVIGCY---ETLELWNMTENKTL 800 (834)
Q Consensus 768 I~svafs--pdg~-~L~sgs~d---g~I~Iwdl~~~~~~ 800 (834)
+..+.++ +++. .+++.++. +.++.||+.+++..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~ 399 (686)
T PRK10115 361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERR 399 (686)
T ss_pred EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEE
Confidence 3333344 4444 34333332 38899998877643
No 365
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.68 E-value=0.0054 Score=73.95 Aligned_cols=142 Identities=8% Similarity=0.099 Sum_probs=98.5
Q ss_pred CCEEEEE-eCCCeEEEEecCCCCceeeeeccCCCC-eEEEEEcc-----CCCcEEEEEeCCCcEEEEECCCCc--eee--
Q 003279 606 LSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTT-VMSLDFHP-----SKEDLLCSCDNNSEIRYWSINNGS--CAG-- 674 (834)
Q Consensus 606 g~~Latg-s~Dg~I~IWDl~s~~~~i~~~~~h~~~-V~sl~fsp-----dg~~llasgs~Dg~I~lwDl~s~~--~i~-- 674 (834)
.++|+.. .....|+-.|++.++. +..+..|... |..++-.. +....| .|-.+..|..||.+-.. ++.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKV-V~eW~~~~~~~v~~~~p~~K~aqlt~e~tf-lGls~n~lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKV-VEEWKVHDDIPVVDIAPDSKFAQLTNEQTF-LGLSDNSLFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcE-EEEeecCCCcceeEecccccccccCCCceE-EEECCCceEEeccCCCCCceeecc
Confidence 3444433 3467899999998775 6666666543 55554321 112223 56668899999998632 332
Q ss_pred --EeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcC
Q 003279 675 --VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIG 750 (834)
Q Consensus 675 --~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~ 750 (834)
.+.......|++-+.+ ++|++|+.+|.|++||--.......+.+-..+|.+|+.+.||++|++.++..+.+++..
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTED-GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred ccccccCCCceEEEecCC-ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 2223445667765554 78999999999999995444445556677889999999999999999999989998863
No 366
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.61 E-value=0.027 Score=62.88 Aligned_cols=221 Identities=10% Similarity=0.096 Sum_probs=110.8
Q ss_pred CCCEEEEEe-CCCcEEEEeCCC----CeEEEEecc---CC----CCeEEEEECCCCCEEEEEeC------CCeEEEEecC
Q 003279 563 DGKLLATGG-HDKKAVLWCTES----FTVKSTLEE---HT----QWITDVRFSPSLSRLATSSA------DRTVRVWDTE 624 (834)
Q Consensus 563 dg~~Lasgs-~Dg~I~IWd~~t----~~~~~~l~~---h~----~~I~~l~fspdg~~Latgs~------Dg~I~IWDl~ 624 (834)
+.++|+..+ ..+.|+|+|+.+ -+..++++. +. ..-..+...|+|.+++++-. -|-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777766 778999999873 345555542 11 12234455678888887632 2467777777
Q ss_pred CCCceeeeecc---CCCCeEEEEEccCCCcEEEEEe--------------------CCCcEEEEECCCCceeeEeecCCC
Q 003279 625 NPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCD--------------------NNSEIRYWSINNGSCAGVFKCQSG 681 (834)
Q Consensus 625 s~~~~i~~~~~---h~~~V~sl~fspdg~~llasgs--------------------~Dg~I~lwDl~s~~~i~~~~~~~~ 681 (834)
+... ...... ....-+.+-|.|..+ +++|.. ...++.+||+.+.+.+.++.....
T Consensus 166 tf~v-~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 166 TFEV-KGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp T--E-EEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred cccc-cceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 5432 222222 223456677788654 554543 245899999999999999987532
Q ss_pred ---eeEEEEec--CCCEEEEEEc-CCeEEEEEC-CCC----eEEEEEeCC-----------------CCCEEEEEEcCCC
Q 003279 682 ---ATQMRFQP--RLGRILAAAI-ENYISILDV-ETQ----VCRLKLQGH-----------------KNQVHSVCWNTSG 733 (834)
Q Consensus 682 ---i~~l~~sp--~g~~ll~~s~-dg~I~iwDl-~t~----~~~~~l~~h-----------------~~~I~sl~~spdg 733 (834)
...+.|.. +..+-++++. ...|..|-- +.+ +.+..+... ..-|+.|.+|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 45667654 4445444443 455555433 443 223333211 2457899999999
Q ss_pred CEEEEEe--CCeEEEEEcCCCCCceeEEEeecCC----------------CceEEEEEeCCCCEEEEEEc
Q 003279 734 EYLASVS--DELVRVWSIGSGSKGECIHELSCTG----------------NKFHSCVFHPTFPSLLVIGC 785 (834)
Q Consensus 734 ~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~----------------~~I~svafspdg~~L~sgs~ 785 (834)
++|.++. +|.|+.||+......+.+..+.... +....+.+|.||+.|++.++
T Consensus 324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 9999988 9999999999877666665543221 23467889999999888754
No 367
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.14 Score=54.01 Aligned_cols=270 Identities=9% Similarity=0.034 Sum_probs=150.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc--CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCcee
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 630 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~--h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i 630 (834)
+-+..+.++ +++...+..+.-++|.|+.+......+.. -.+--.++.. .|++..++..|.-+.+.|+.++..+.
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence 345566676 45788888888999999986544332211 1133344444 57898888877778899998766543
Q ss_pred --eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc---eeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003279 631 --RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 705 (834)
Q Consensus 631 --~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~---~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~i 705 (834)
..+.........++.+ |+ ..+.+..|+-+.+.|+.+.. .+........+.++..+++. .+....+-.+.+
T Consensus 163 lagrya~~~~d~~~v~IS--Gn-~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr--~y~vvy~egvli 237 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GN-YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNR--AYLVVYDEGVLI 237 (370)
T ss_pred eeeeeccCCCCceeEEEe--cC-eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCe--eEEEEcccceEE
Confidence 2333344445677777 33 45566678889999997643 34444445577777777653 444444556777
Q ss_pred EECCCCeEEEEEeC-CCCCEEEE-EEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003279 706 LDVETQVCRLKLQG-HKNQVHSV-CWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 782 (834)
Q Consensus 706 wDl~t~~~~~~l~~-h~~~I~sl-~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~s 782 (834)
.|..+.+....+.. .+..+.++ .+.-.+++..... +..+-+.|+.+.........+......-..+... +.++..
T Consensus 238 vd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yi 315 (370)
T COG5276 238 VDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYI 315 (370)
T ss_pred EecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEe
Confidence 77776653333321 12222222 2222455555555 6667777777653322222222222222222222 223333
Q ss_pred EEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 783 IGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 783 gs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+..+ ...+.+....+.. ...+....+.+.+.+-+.+++.+...++.+.||+
T Consensus 316 adkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~ 367 (370)
T COG5276 316 ADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIE 367 (370)
T ss_pred ccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEE
Confidence 3333 3444444433322 1112222344444555566888889999999986
No 368
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.57 E-value=0.19 Score=60.71 Aligned_cols=272 Identities=13% Similarity=0.114 Sum_probs=157.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEE--eCCCCeEEEEe--ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLW--CTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 628 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IW--d~~t~~~~~~l--~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~ 628 (834)
..|.-.+|-.|..+|.++..||.+.-| |..++..-..- .-...++.--.|+..++.-+.+..|.-..+|-.+. +.
T Consensus 584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~-kL 662 (1096)
T KOG1897|consen 584 RSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG-KL 662 (1096)
T ss_pred hheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC-cE
Confidence 346666777778899999999998766 55555443221 22445677777776655555555666666665542 22
Q ss_pred eeeeeccCCCCeEEEE-Ec-cCCCcEEEEEeCCCcEEEEECCCCc--eeeEeecCCCeeEEEEecCCCEEEEEEc-----
Q 003279 629 SLRTFTGHSTTVMSLD-FH-PSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKCQSGATQMRFQPRLGRILAAAI----- 699 (834)
Q Consensus 629 ~i~~~~~h~~~V~sl~-fs-pdg~~llasgs~Dg~I~lwDl~s~~--~i~~~~~~~~i~~l~~sp~g~~ll~~s~----- 699 (834)
....+.- ..+..+| |+ +.....++++. .+.+++..+..-. .++++..+.....+++.+....+.+.+.
T Consensus 663 v~spls~--kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~ 739 (1096)
T KOG1897|consen 663 VYSPLSL--KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESS 739 (1096)
T ss_pred EEeccch--HHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccc
Confidence 2221111 1122221 22 12233454554 5567777665422 3344555677777888774344444332
Q ss_pred ------C---CeEEEEECCCCeEEEEEeC-CCC---CEEEEEEcCC-CCEEEEEe-----------CCeEEEEEcCCCCC
Q 003279 700 ------E---NYISILDVETQVCRLKLQG-HKN---QVHSVCWNTS-GEYLASVS-----------DELVRVWSIGSGSK 754 (834)
Q Consensus 700 ------d---g~I~iwDl~t~~~~~~l~~-h~~---~I~sl~~spd-g~~Lasgs-----------Dg~I~IwDl~s~~~ 754 (834)
. ..++++|-++-+.....+- ... .|.++.|..| +.++++|. .|.|.||.+.....
T Consensus 740 ~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~ 819 (1096)
T KOG1897|consen 740 AEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS 819 (1096)
T ss_pred hhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence 1 1467777777655443321 112 3445558776 67777664 25788888877544
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE-eccCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 755 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 755 ~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~-l~~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
.+.+++....+ .+.++..- +|++| ++-...|++|++.+.+.+. -..|..++..+...-.+..++.|.-=+.|.+
T Consensus 820 L~~v~e~~v~G-av~aL~~f-ngkll--A~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 820 LELVAETVVKG-AVYALVEF-NGKLL--AGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred eeeeeeeeecc-ceeehhhh-CCeEE--EecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 45555544433 33333221 34444 4445589999999986664 4467888889988888999999876666544
No 369
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.47 E-value=0.013 Score=69.57 Aligned_cols=208 Identities=13% Similarity=0.127 Sum_probs=115.6
Q ss_pred CCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEe------CCC--eEEEEecCCCCceeeeeccCCCCeEEEE
Q 003279 573 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS------ADR--TVRVWDTENPDYSLRTFTGHSTTVMSLD 644 (834)
Q Consensus 573 Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs------~Dg--~I~IWDl~s~~~~i~~~~~h~~~V~sl~ 644 (834)
+|.+.-.+-.....+.-..+....+...+++|+|+.++..- .|. .|.+++.. ........+ ...+.-.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~g--~~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLEG--HSLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--CcceeeecC--CCCCCce
Confidence 56665544332222222223334688999999999887765 244 45555543 222222232 2478889
Q ss_pred EccCCCcEEEEEeC-----------CCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEE---EECCC
Q 003279 645 FHPSKEDLLCSCDN-----------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI---LDVET 710 (834)
Q Consensus 645 fspdg~~llasgs~-----------Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~i---wDl~t 710 (834)
|+|+|..+.+.... .+.+.+.+++.+.... .....|..+.|+|||..+++.. ++.|++ .....
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~ 480 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTED 480 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCC
Confidence 99997755544321 2344444555444333 3346799999999999998876 477777 45445
Q ss_pred CeEEE----EEe-CCCCCEEEEEEcCCCCEEEEEeCC--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003279 711 QVCRL----KLQ-GHKNQVHSVCWNTSGEYLASVSDE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 783 (834)
Q Consensus 711 ~~~~~----~l~-~h~~~I~sl~~spdg~~LasgsDg--~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sg 783 (834)
+.... .+. .-...+.++.|..++.+++...++ .+...++.... .....-......+..++-++. .|++.
T Consensus 481 G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~--~~~~~~~n~~~~v~~vaa~~~--~iyv~ 556 (591)
T PRK13616 481 GQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN--SDALPSRNLSAPVVAVAASPS--TVYVT 556 (591)
T ss_pred CceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCcc--ccccCCCCccCceEEEecCCc--eEEEE
Confidence 54111 122 223346889999999976554433 45444554321 111011112445666666653 46666
Q ss_pred EcCCeEEE
Q 003279 784 GCYETLEL 791 (834)
Q Consensus 784 s~dg~I~I 791 (834)
..++.+.+
T Consensus 557 ~~~g~~~l 564 (591)
T PRK13616 557 DARAVLQL 564 (591)
T ss_pred cCCceEEe
Confidence 66664443
No 370
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.44 E-value=0.038 Score=63.06 Aligned_cols=188 Identities=9% Similarity=0.083 Sum_probs=97.2
Q ss_pred eEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC-----CCeeEE-E---E
Q 003279 617 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-----SGATQM-R---F 687 (834)
Q Consensus 617 ~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~-----~~i~~l-~---~ 687 (834)
.|.||+..... +..+.-..+.|.++.|+.+. .++ +-..||.+++||+.. +. .+... ..|... . +
T Consensus 62 ~I~iys~sG~l--l~~i~w~~~~iv~~~wt~~e-~Lv-vV~~dG~v~vy~~~G-~~--~fsl~~~i~~~~v~e~~i~~~~ 134 (410)
T PF04841_consen 62 SIQIYSSSGKL--LSSIPWDSGRIVGMGWTDDE-ELV-VVQSDGTVRVYDLFG-EF--QFSLGEEIEEEKVLECRIFAIW 134 (410)
T ss_pred EEEEECCCCCE--eEEEEECCCCEEEEEECCCC-eEE-EEEcCCEEEEEeCCC-ce--eechhhhccccCcccccccccc
Confidence 36666665322 22222222789999998864 355 445699999999973 33 22211 122211 1 1
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCe-EEEEEe---CCCC------CEE-EEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc
Q 003279 688 QPRLGRILAAAIENYISILDVETQV-CRLKLQ---GHKN------QVH-SVCWNTSGEYLASVS-DELVRVWSIGSGSKG 755 (834)
Q Consensus 688 sp~g~~ll~~s~dg~I~iwDl~t~~-~~~~l~---~h~~------~I~-sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~ 755 (834)
..+.+ +++...++.|++..--... ....+. .... .+. ...++.+....+... ++.+.+.+-...
T Consensus 135 ~~~~G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~--- 210 (410)
T PF04841_consen 135 FYKNG-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF--- 210 (410)
T ss_pred cCCCC-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc---
Confidence 12122 4444455555555332221 111111 1000 000 022333444333333 445554443221
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE-ec-cCCCCeEEEEEeCCCC
Q 003279 756 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LS-AHDKLVSSLAASTVNG 819 (834)
Q Consensus 756 ~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~-l~-~h~~~V~~lafspdg~ 819 (834)
..+ ...+++..+++||++++|+.-..+|.+.+.+.+-.+.+. +. .-......+.|.-+..
T Consensus 211 ---~~i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 211 ---KQI-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred ---ccc-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 011 124689999999999999999999999998876555542 22 2235666777775543
No 371
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.43 E-value=0.00047 Score=80.12 Aligned_cols=109 Identities=14% Similarity=0.252 Sum_probs=85.7
Q ss_pred EEEEEccCCCcEEEEEe----CCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003279 641 MSLDFHPSKEDLLCSCD----NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 716 (834)
Q Consensus 641 ~sl~fspdg~~llasgs----~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~ 716 (834)
+-+.|+|... +|++++ ..|.|.|| .++|++-+....+-.++++||+|..-.|+.+-.-|.+.+|...+.+....
T Consensus 19 ti~SWHPseP-lfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEP-LFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCCCCc-eeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 3456888866 554543 45778877 45566666666566788899999876677777779999999988877766
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCC
Q 003279 717 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 751 (834)
Q Consensus 717 l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s 751 (834)
...|+.+|..+.||++|..+.++. -|.|.+|.+.-
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 777999999999999999999999 88999998763
No 372
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.42 E-value=0.051 Score=59.34 Aligned_cols=183 Identities=13% Similarity=0.023 Sum_probs=115.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc-----CCCCeEEEEECCCCCEEEEEeC-----C----CeEEE
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSA-----D----RTVRV 620 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~-----h~~~I~~l~fspdg~~Latgs~-----D----g~I~I 620 (834)
+.++..-.++..|+++. ..+.+++.+++..+..+.. .....+++...|+|.+.++... . ..-.|
T Consensus 68 ~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~l 145 (307)
T COG3386 68 FSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSL 145 (307)
T ss_pred cccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceE
Confidence 45555544555666553 3467777766655333321 1245678889999987776544 1 11245
Q ss_pred EecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC--Cce---e-eEee--cCCCeeEEEEecCCC
Q 003279 621 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--GSC---A-GVFK--CQSGATQMRFQPRLG 692 (834)
Q Consensus 621 WDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s--~~~---i-~~~~--~~~~i~~l~~sp~g~ 692 (834)
|.++.....++.+..+-..-+.|+|+||++.++++=+..+.|..|++.. +.. . ..+. ..+..-.++...+|.
T Consensus 146 yr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~ 225 (307)
T COG3386 146 YRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN 225 (307)
T ss_pred EEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC
Confidence 5554223335666666667789999999987776666678899988762 111 1 1111 134456677888888
Q ss_pred EEEEEEcCC-eEEEEECCCCeEEEEEeCCCCCEEEEEEc-CCCCEEEEEe
Q 003279 693 RILAAAIEN-YISILDVETQVCRLKLQGHKNQVHSVCWN-TSGEYLASVS 740 (834)
Q Consensus 693 ~ll~~s~dg-~I~iwDl~t~~~~~~l~~h~~~I~sl~~s-pdg~~Lasgs 740 (834)
+.+++...| .|.+|+.. ++.+..+.-....+++++|- ++.+.|++.+
T Consensus 226 lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 226 LWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 776555554 99999999 88888888776788888884 4555555554
No 373
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00064 Score=77.38 Aligned_cols=95 Identities=16% Similarity=0.167 Sum_probs=80.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeE-EEEECCCCCEEEEEeCCCeEEEEecCCCCcee
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSL 630 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~-~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i 630 (834)
.-.|.-+.|+|.-.+||++..+|.|.+..+. ...+.++..|...++ +++|.|||+.||+|-.||+|++.|++++....
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3457889999999999999999999999988 778888887888888 99999999999999999999999999877544
Q ss_pred eeeccCCCCeEEEEEcc
Q 003279 631 RTFTGHSTTVMSLDFHP 647 (834)
Q Consensus 631 ~~~~~h~~~V~sl~fsp 647 (834)
.....-...|.++.|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 43344556788888863
No 374
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.35 E-value=0.036 Score=56.47 Aligned_cols=208 Identities=12% Similarity=0.099 Sum_probs=114.0
Q ss_pred CCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEcc-CC-CcEEEEEeCCCcEEEEECC--CCceeeEee----
Q 003279 606 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SK-EDLLCSCDNNSEIRYWSIN--NGSCAGVFK---- 677 (834)
Q Consensus 606 g~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fsp-dg-~~llasgs~Dg~I~lwDl~--s~~~i~~~~---- 677 (834)
+.++.+--..+.|+-||+.........+.+.. +.++.+-- ++ ..+.+.++..-.|.-||-. .....+++.
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 34444544567777788887554333333221 33333321 21 2345555555566667743 222333211
Q ss_pred --cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC--------CCCEEEEEEcCCCCEEEEEe--CCeEE
Q 003279 678 --CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH--------KNQVHSVCWNTSGEYLASVS--DELVR 745 (834)
Q Consensus 678 --~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h--------~~~I~sl~~spdg~~Lasgs--Dg~I~ 745 (834)
.....+.-..+|+|++ +.|.....-.++....+....-+.+| -..-+.++|+.+.+.+.... +-+|.
T Consensus 105 d~kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred hHHhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence 1344666778899888 44443211112222222222222222 22335789998877666555 66887
Q ss_pred EEE--cCCCCC--ceeEEEeec----CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeC
Q 003279 746 VWS--IGSGSK--GECIHELSC----TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAST 816 (834)
Q Consensus 746 IwD--l~s~~~--~~~i~~~~~----~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafsp 816 (834)
-|| ..++.. .+.+..++. ..-....+++..+|...+++-..++|..+|..+|+.+ .+.-....|+++||--
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 787 555432 123333332 1112234556677887777777779999999999988 5556688899999974
No 375
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.33 E-value=0.035 Score=58.19 Aligned_cols=231 Identities=12% Similarity=0.096 Sum_probs=140.9
Q ss_pred EEEEEcCCCC-EEEEEeCCCc-EEEEeCCCCeEEEEeccCCCC--eEEEEECCCCCEEEEEeCC-----CeEEEEecCCC
Q 003279 556 ESCHFSPDGK-LLATGGHDKK-AVLWCTESFTVKSTLEEHTQW--ITDVRFSPSLSRLATSSAD-----RTVRVWDTENP 626 (834)
Q Consensus 556 ~sl~fSpdg~-~Lasgs~Dg~-I~IWd~~t~~~~~~l~~h~~~--I~~l~fspdg~~Latgs~D-----g~I~IWDl~s~ 626 (834)
..|+|+|.-. -++.+-.-|+ ..++|........++...++. --.=+|++||.+|+..-.| |.|-|||.+..
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 3578888544 4666666565 467888877766555322221 1124699999999876543 78999999976
Q ss_pred CceeeeeccCCCCeEEEEEccCCCcEEEEEe------C-----------CCcEEEEECCCCceeeEeec-----CCCeeE
Q 003279 627 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD------N-----------NSEIRYWSINNGSCAGVFKC-----QSGATQ 684 (834)
Q Consensus 627 ~~~i~~~~~h~~~V~sl~fspdg~~llasgs------~-----------Dg~I~lwDl~s~~~i~~~~~-----~~~i~~ 684 (834)
-..+-.+..|.-....+.|.+||..+++..+ . .-.+.+.|..+|..+.+... .-.+..
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRH 230 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRH 230 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceee
Confidence 6667778888888889999999987665543 0 11344555555655544433 234677
Q ss_pred EEEecCCCEEEEEEcCCe-----EEEEECCCCeEEEEEeC-------CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcC
Q 003279 685 MRFQPRLGRILAAAIENY-----ISILDVETQVCRLKLQG-------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIG 750 (834)
Q Consensus 685 l~~sp~g~~ll~~s~dg~-----I~iwDl~t~~~~~~l~~-------h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~ 750 (834)
++..+++..++.+-..|- -.+=-...++.+.-+.- ....|-+|+.+.+..+++..+ .+...+||..
T Consensus 231 ld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~ 310 (366)
T COG3490 231 LDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAA 310 (366)
T ss_pred eeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcC
Confidence 777777665554443331 11111122233322221 224577888887777777777 5589999999
Q ss_pred CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003279 751 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 793 (834)
Q Consensus 751 s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwd 793 (834)
++. .+.... -..++-.-+...-+++.+.+|.+.++.
T Consensus 311 tG~---vv~~a~----l~daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 311 TGA---VVSEAA----LPDAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred CCc---EEeccc----ccccccceeccCceEEecCCceEEecc
Confidence 983 332211 111222334444577888888888774
No 376
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.29 E-value=0.14 Score=54.04 Aligned_cols=194 Identities=13% Similarity=0.084 Sum_probs=125.9
Q ss_pred eEEEEec-cCCCCeEEEEECCCCCEEEEEeCCC--eEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCc
Q 003279 585 TVKSTLE-EHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 661 (834)
Q Consensus 585 ~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg--~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 661 (834)
+.+.++. ......-.+.|..++.++-+.+.-| .|+.+|+.+++............-..++... +.++...-.++.
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~ 111 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCe
Confidence 3444543 2233455788877787777777665 7999999988754343333344444555553 456666778999
Q ss_pred EEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC-----CCCEEEEEEcCCCCEE
Q 003279 662 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH-----KNQVHSVCWNTSGEYL 736 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h-----~~~I~sl~~spdg~~L 736 (834)
..+||..+-+.+..+.....-..++ .++..|+.......|+++|.++.+....+.-. -..++-+.|. +|.+.
T Consensus 112 ~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~Iy 188 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIY 188 (264)
T ss_dssp EEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEE
T ss_pred EEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEE
Confidence 9999999999999998877767776 56778888888899999999887666655432 2245667775 56666
Q ss_pred EEEe-CCeEEEEEcCCCCCceeEEEeec---------------CCCceEEEEEeCCCCEEEEEEcC
Q 003279 737 ASVS-DELVRVWSIGSGSKGECIHELSC---------------TGNKFHSCVFHPTFPSLLVIGCY 786 (834)
Q Consensus 737 asgs-Dg~I~IwDl~s~~~~~~i~~~~~---------------~~~~I~svafspdg~~L~sgs~d 786 (834)
|-.- ...|...|..++ .++..+.. .....+.|+++|....|++.+..
T Consensus 189 ANVW~td~I~~Idp~tG---~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 189 ANVWQTDRIVRIDPETG---KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp EEETTSSEEEEEETTT----BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCeEEEEeCCCC---eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 6555 778999999988 44443321 13467999999998888777653
No 377
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.26 E-value=0.026 Score=67.12 Aligned_cols=187 Identities=11% Similarity=0.032 Sum_probs=112.7
Q ss_pred CCCCeEEEEEccCCCcEEEEEe-----CC--CcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcC--------
Q 003279 636 HSTTVMSLDFHPSKEDLLCSCD-----NN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-------- 700 (834)
Q Consensus 636 h~~~V~sl~fspdg~~llasgs-----~D--g~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d-------- 700 (834)
....+.+.+++|++..++++.. .| ..|.+++.. +.. ..+........-.|+|+|+.+++....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcceEEEec
Confidence 3346889999999998887762 23 356666653 222 333333458889999998877776533
Q ss_pred ----CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEE---EEcCCCCCcee--EEEeec-CCCceEE
Q 003279 701 ----NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRV---WSIGSGSKGEC--IHELSC-TGNKFHS 770 (834)
Q Consensus 701 ----g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~I---wDl~s~~~~~~--i~~~~~-~~~~I~s 770 (834)
+.+.+.+++.+.... .....|..+.|||||..|+...++.|+| -....+. ... ...+.. ....+..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVS 501 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEeecccCCcccc
Confidence 234444444433322 2356799999999999999888888887 3333332 111 112222 2334688
Q ss_pred EEEeCCCCEEEEEEcCC--eEEEEECCCCeEEEecc--CCCCeEEEEEeCCCCEEEEEecCCcEE
Q 003279 771 CVFHPTFPSLLVIGCYE--TLELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDKCVK 831 (834)
Q Consensus 771 vafspdg~~L~sgs~dg--~I~Iwdl~~~~~~~l~~--h~~~V~~lafspdg~~LaSgs~DG~I~ 831 (834)
+.|..++.. +++..++ .++..++.......+.. ....+.+|+-+++ .|+....+|.+.
T Consensus 502 l~W~~~~~L-~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 502 LDWRTGDSL-VVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred ceEecCCEE-EEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 999999984 4555544 45555665443322222 3567777877763 355556666543
No 378
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.25 E-value=0.015 Score=69.12 Aligned_cols=230 Identities=12% Similarity=0.075 Sum_probs=120.8
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCeEEEEecc-CCCCeEEEEECCCCCEEEEEeCC------CeEEEEecCCCCce
Q 003279 563 DGKLLATGGHD------KKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYS 629 (834)
Q Consensus 563 dg~~Lasgs~D------g~I~IWd~~t~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~D------g~I~IWDl~s~~~~ 629 (834)
.+.+++.||.+ ..|..||..+..-.....- +...-.++++. ++.+.++|+.| .++..||..++.+.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 34456666665 3677888777643322211 22223344444 45788889888 36788888876642
Q ss_pred eeeeccCCCCeEEEEEccCCCcEEEEEeCCC-----cEEEEECCCCceeeEeecCCCeeEEEE-ecCCCEEEEEEcCC--
Q 003279 630 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSGATQMRF-QPRLGRILAAAIEN-- 701 (834)
Q Consensus 630 i~~~~~h~~~V~sl~fspdg~~llasgs~Dg-----~I~lwDl~s~~~i~~~~~~~~i~~l~~-sp~g~~ll~~s~dg-- 701 (834)
. ...-...-..+....-+..+.++|+.|| +|..||..+.+....-........... .-++...++|+.++
T Consensus 363 ~--~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 363 P--VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred c--cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence 2 2221111222222222356888888886 577888877664443332222222222 33456666676543
Q ss_pred ----eEEEEECCCCeEEE--EEeCCCCCEEEEEEcCCCCEEEEEe-CC-----eEEEEEcCCCCCceeEEEeecCCCceE
Q 003279 702 ----YISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSCTGNKFH 769 (834)
Q Consensus 702 ----~I~iwDl~t~~~~~--~l~~h~~~I~sl~~spdg~~Lasgs-Dg-----~I~IwDl~s~~~~~~i~~~~~~~~~I~ 769 (834)
.+..||..+..-.. .+....... .++. -++.+++.|+ |+ +|..||..+..- ..+.........+.
T Consensus 441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W-~~v~~m~~~rs~~g 517 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQW-TMVAPMTSPRSAVG 517 (571)
T ss_pred cccceEEEEcCCCCceeecCCcccccccc-eEEE-ECCEEEEECCccCCCccceEEEEcCCCCce-eEcccCcccccccc
Confidence 57888888764332 222111111 2332 2566666666 55 478888877621 12211221122111
Q ss_pred EEEEeCCCCEEEEEEcCC-----eEEEEECCCCeEE
Q 003279 770 SCVFHPTFPSLLVIGCYE-----TLELWNMTENKTL 800 (834)
Q Consensus 770 svafspdg~~L~sgs~dg-----~I~Iwdl~~~~~~ 800 (834)
...-++...++|+.|+ +|..||..+.+..
T Consensus 518 --~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 518 --VVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred --EEEECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 1222455566777666 6888888777655
No 379
>PRK10115 protease 2; Provisional
Probab=97.24 E-value=0.29 Score=59.75 Aligned_cols=200 Identities=9% Similarity=0.018 Sum_probs=107.9
Q ss_pred CCeEEEEECCCCCEEEEEeCC-----CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC-----CcEEE
Q 003279 595 QWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRY 664 (834)
Q Consensus 595 ~~I~~l~fspdg~~Latgs~D-----g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~l 664 (834)
-.+..+.|+||+++|+.+... ..|++.|+.++......+.+- -..++|.+|++.++++...+ ..|++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 346778999999988876432 368899998765322222221 14699999998888776533 37888
Q ss_pred EECCCC--ceeeEeecCCC-ee-EEEEecCCCEEEEEEc---CCeEEEEECC--CCeEEEEEeCCCCCEEEEEEcCCCCE
Q 003279 665 WSINNG--SCAGVFKCQSG-AT-QMRFQPRLGRILAAAI---ENYISILDVE--TQVCRLKLQGHKNQVHSVCWNTSGEY 735 (834)
Q Consensus 665 wDl~s~--~~i~~~~~~~~-i~-~l~~sp~g~~ll~~s~---dg~I~iwDl~--t~~~~~~l~~h~~~I~sl~~spdg~~ 735 (834)
+++.++ +....+..... .. .+..+.++++++..+. ++.+.+|+.. ++.....+.........+. +..+.+
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 282 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF 282 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence 899887 44444443222 32 2333447777776554 3578888853 3332222222222223332 333333
Q ss_pred EEEEe-CC---eEEEEEcCCCCCceeEEEeecC--CCceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCeEEEe
Q 003279 736 LASVS-DE---LVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLTL 802 (834)
Q Consensus 736 Lasgs-Dg---~I~IwDl~s~~~~~~i~~~~~~--~~~I~svafspdg~~L~sgs~dg--~I~Iwdl~~~~~~~l 802 (834)
++... +. .|...++.... .. ..+..+ ...+..+.+..+ ..+++...++ .|++++..++....+
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~--~~-~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~~~~~~~~~~l 353 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQ--QW-EELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQINRKTREVIGI 353 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcc--cC-eEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEEcCCCCceEEe
Confidence 33333 22 34444554211 11 222233 346777777733 3344444455 566667655554443
No 380
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.23 E-value=0.019 Score=69.39 Aligned_cols=138 Identities=12% Similarity=0.088 Sum_probs=98.8
Q ss_pred EEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecC-------CCEEEEEEcCCeEEEEECCCC--eEEEE-E--eCC
Q 003279 653 LCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR-------LGRILAAAIENYISILDVETQ--VCRLK-L--QGH 720 (834)
Q Consensus 653 lasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~-------g~~ll~~s~dg~I~iwDl~t~--~~~~~-l--~~h 720 (834)
|........|+-.|++.|+.+..+..+..+.-..+.|+ ....++|-.++.|..||.+-. +++.. . ...
T Consensus 497 l~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~ 576 (794)
T PF08553_consen 497 LLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSS 576 (794)
T ss_pred eecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccccc
Confidence 33334567899999999999999998776656666664 345688888999999999853 23311 1 124
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 721 KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 721 ~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
.....|++-+.+|.++++..+|.||+||-- +. .....+.+-+.+|..|..+.||++|++.+. ..|.+++.
T Consensus 577 ~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~--~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 577 KNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GK--RAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred CCCceEEEecCCceEEEEeCCCcEEeeccc-ch--hhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 456788888888765554449999999943 21 344456677899999999999998776554 46777765
No 381
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.17 E-value=1 Score=54.65 Aligned_cols=271 Identities=11% Similarity=0.072 Sum_probs=151.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCC--CCEEEEEeCCCeEEEEecCCCC-c
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPD-Y 628 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~IWDl~s~~-~ 628 (834)
+.++.--.|+..++.-+.+..|.-..+|... ++.+.+--.-+..-.-+.|+.+ ...|+++. .+.+++.-++.-. .
T Consensus 629 t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl 706 (1096)
T KOG1897|consen 629 TQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLSLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKL 706 (1096)
T ss_pred CCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccchHHhhhhcccccccCCceEEEec-CCceEEEEecchhhc
Confidence 3445555666655544445556666666533 3333221111111112223322 33455553 4457777665422 2
Q ss_pred eeeeeccCCCCeEEEEEccCCCcEEEEEeC-----------C---CcEEEEECCCCceeeEeecC-----CCeeEEEEec
Q 003279 629 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----------N---SEIRYWSINNGSCAGVFKCQ-----SGATQMRFQP 689 (834)
Q Consensus 629 ~i~~~~~h~~~V~sl~fspdg~~llasgs~-----------D---g~I~lwDl~s~~~i~~~~~~-----~~i~~l~~sp 689 (834)
.+++.. -......+++.+... ++++.+. . ..++++|-++-+.+...... ..+.++.|..
T Consensus 707 ~irtvp-l~~~prrI~~q~~sl-~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~ 784 (1096)
T KOG1897|consen 707 HIRTVP-LGESPRRICYQESSL-TFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTD 784 (1096)
T ss_pred ceeeec-CCCChhheEecccce-EEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecC
Confidence 234433 334566777776433 3333321 1 14667777766655444331 2244555877
Q ss_pred C-CCEEEEEEc----------CCeEEEEECCCCeEEEEEeC--CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCce
Q 003279 690 R-LGRILAAAI----------ENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGE 756 (834)
Q Consensus 690 ~-g~~ll~~s~----------dg~I~iwDl~t~~~~~~l~~--h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~ 756 (834)
| +.++++|+. .|.|.+|.......+..... -.+.+.++..- +|++|| +-...|++|++.+. +
T Consensus 785 d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA-~In~~vrLye~t~~---~ 859 (1096)
T KOG1897|consen 785 DPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLA-GINQSVRLYEWTTE---R 859 (1096)
T ss_pred CCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEE-ecCcEEEEEEcccc---c
Confidence 7 666777664 47888888776333222221 23444444432 455444 45778999999887 4
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE--EECCCCeEE--EeccCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 757 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 757 ~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~I--wdl~~~~~~--~l~~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
.++.-..+...+..+.+.-.+..|++|..-+.|.+ |+-..|... .-..+..+++++.+-.+..++ .+..+|.+.+
T Consensus 860 eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~yl-gae~~gNlf~ 938 (1096)
T KOG1897|consen 860 ELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYL-GAENSGNLFT 938 (1096)
T ss_pred eehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEE-eecccccEEE
Confidence 55555667788899999999999999998886555 444554454 344678888998886655444 4456666654
No 382
>PRK13684 Ycf48-like protein; Provisional
Probab=97.17 E-value=0.45 Score=52.82 Aligned_cols=269 Identities=8% Similarity=-0.009 Sum_probs=132.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe----ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL----EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 627 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l----~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~ 627 (834)
...+.+|+|..+..-+|+|. ++.|..= .+.++.-... ......+.++.|..+ ..+++ +..+.|. ...++.
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~il~T-~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~--~S~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTLLET-NDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLL--HTTDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEEEEE-cCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEE--EECCCC
Confidence 55799999986666666664 4543321 1222222111 112334778888653 34444 4555433 333322
Q ss_pred ceeeeec---cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee--cCCCeeEEEEecCCCEEEEEEcCCe
Q 003279 628 YSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENY 702 (834)
Q Consensus 628 ~~i~~~~---~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~--~~~~i~~l~~sp~g~~ll~~s~dg~ 702 (834)
....... ........+..... ..++++ +..|.|..= .+.|+.=..+. ....+..+.+.+++. +++.+..|.
T Consensus 119 ~tW~~~~~~~~~~~~~~~i~~~~~-~~~~~~-g~~G~i~~S-~DgG~tW~~~~~~~~g~~~~i~~~~~g~-~v~~g~~G~ 194 (334)
T PRK13684 119 KNWTRIPLSEKLPGSPYLITALGP-GTAEMA-TNVGAIYRT-TDGGKNWEALVEDAAGVVRNLRRSPDGK-YVAVSSRGN 194 (334)
T ss_pred CCCeEccCCcCCCCCceEEEEECC-Ccceee-eccceEEEE-CCCCCCceeCcCCCcceEEEEEECCCCe-EEEEeCCce
Confidence 2122211 01111222222222 223333 334433221 12222111111 134578888888764 445555565
Q ss_pred EEEE-ECCCCeEEEE-EeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEe-ecCCCceEEEEEeCCCCE
Q 003279 703 ISIL-DVETQVCRLK-LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPS 779 (834)
Q Consensus 703 I~iw-Dl~t~~~~~~-l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~-~~~~~~I~svafspdg~~ 779 (834)
+..- |- .++.-.. .......++++.+.+++..++++..|.+++=....+.....+..- ......+..+.+.+++.
T Consensus 195 i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~- 272 (334)
T PRK13684 195 FYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE- 272 (334)
T ss_pred EEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC-
Confidence 5432 22 1221111 223456789999999999888877886653234444222211110 11234577889998876
Q ss_pred EEEEEcCCeEEEEECCCCeEE-Ee---ccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 780 LLVIGCYETLELWNMTENKTL-TL---SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 780 L~sgs~dg~I~Iwdl~~~~~~-~l---~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+++++.+|.|.. ....++.- .. ..-......+.|..+++.++ .+..|.|.-|+
T Consensus 273 ~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 273 IWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred EEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 556666776553 44444432 22 12234577888877766655 45678776653
No 383
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.09 E-value=0.021 Score=67.77 Aligned_cols=208 Identities=11% Similarity=0.042 Sum_probs=109.1
Q ss_pred CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC------CcEEEEECCCCceeeEeecCCCeeEEEE-e
Q 003279 616 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSGATQMRF-Q 688 (834)
Q Consensus 616 g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D------g~I~lwDl~s~~~i~~~~~~~~i~~l~~-s 688 (834)
..|..||..++.+....-........++++.. +.++++|+.| ..+..||..+++....-.....-..... .
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~ 378 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV 378 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE
Confidence 35777777765432222222333344555553 3578888888 3678889887774442222222111111 2
Q ss_pred cCCCEEEEEEcCC-----eEEEEECCCCeEEEEEeCCCCCEEEE-EEcCCCCEEEEEe-CC------eEEEEEcCCCCCc
Q 003279 689 PRLGRILAAAIEN-----YISILDVETQVCRLKLQGHKNQVHSV-CWNTSGEYLASVS-DE------LVRVWSIGSGSKG 755 (834)
Q Consensus 689 p~g~~ll~~s~dg-----~I~iwDl~t~~~~~~l~~h~~~I~sl-~~spdg~~Lasgs-Dg------~I~IwDl~s~~~~ 755 (834)
-+|...++|+.|| .|..||.++.+-...-. ......+. ...-+|.+.++|+ ++ .+..||..++.-
T Consensus 379 l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W- 456 (571)
T KOG4441|consen 379 LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW- 456 (571)
T ss_pred ECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce-
Confidence 2456677777775 58888887653222111 11122222 1223577677666 43 678888877621
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCeEEEeccCCCCeEEEEE-eCCCCEEEEEecCCc
Q 003279 756 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTLSAHDKLVSSLAA-STVNGMVASASHDKC 829 (834)
Q Consensus 756 ~~i~~~~~~~~~I~svafspdg~~L~sgs~dg-----~I~Iwdl~~~~~~~l~~h~~~V~~laf-spdg~~LaSgs~DG~ 829 (834)
..+........... +..-++...++||.|+ +|..||..+.+...+..-......+.. .-++.+.++|+.||.
T Consensus 457 ~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 457 TLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGN 534 (571)
T ss_pred eecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCc
Confidence 12222221112222 2233455566666665 588999998887755433222222221 224677788888874
No 384
>PHA02713 hypothetical protein; Provisional
Probab=97.06 E-value=0.04 Score=65.48 Aligned_cols=217 Identities=8% Similarity=0.014 Sum_probs=108.1
Q ss_pred cEEEEeCCCCeEEE--EeccCCCCeEEEEECCCCCEEEEEeCC------CeEEEEecCCCCceee-eeccCCCCeEEEEE
Q 003279 575 KAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYSLR-TFTGHSTTVMSLDF 645 (834)
Q Consensus 575 ~I~IWd~~t~~~~~--~l~~h~~~I~~l~fspdg~~Latgs~D------g~I~IWDl~s~~~~i~-~~~~h~~~V~sl~f 645 (834)
.+..||..+.+-.. .+...... .+++. -++.+++.|+.+ ..+..||..+..+... ......... +++.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE
Confidence 56778877654332 22111111 12222 256677777754 3578888877553111 111111111 2222
Q ss_pred ccCCCcEEEEEeCCC-----cEEEEECCCCceeeEeecCCCe--eEEEEecCCCEEEEEEcC------------------
Q 003279 646 HPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSGA--TQMRFQPRLGRILAAAIE------------------ 700 (834)
Q Consensus 646 spdg~~llasgs~Dg-----~I~lwDl~s~~~i~~~~~~~~i--~~l~~sp~g~~ll~~s~d------------------ 700 (834)
. ++.+.+.|+.++ .+..||..+.+....-...... .+++ .-++..+++|+.+
T Consensus 350 ~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 350 I--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred E--CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE-EECCEEEEEeCCCcccccccccccccccccc
Confidence 2 245777777654 4888998876544322221111 1122 2345666666654
Q ss_pred -----CeEEEEECCCCeEE--EEEeCCCCCEEEEEEcCCCCEEEEEe-C------CeEEEEEcCCCCCceeEEEeecCCC
Q 003279 701 -----NYISILDVETQVCR--LKLQGHKNQVHSVCWNTSGEYLASVS-D------ELVRVWSIGSGSKGECIHELSCTGN 766 (834)
Q Consensus 701 -----g~I~iwDl~t~~~~--~~l~~h~~~I~sl~~spdg~~Lasgs-D------g~I~IwDl~s~~~~~~i~~~~~~~~ 766 (834)
..+..||.++.+-. ..+...... .+++ .-++++.+.|+ + ..+..||..+......+..+.....
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred cccccceEEEECCCCCeEeecCCCCccccc-CcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 24778888765322 222111111 1222 22466666665 3 2467898887212233333333333
Q ss_pred ceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCeEEE
Q 003279 767 KFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLT 801 (834)
Q Consensus 767 ~I~svafspdg~~L~sgs~dg--~I~Iwdl~~~~~~~ 801 (834)
....+++ ++...++|+.++ .+..||..+.+...
T Consensus 505 ~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 505 ALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNH 539 (557)
T ss_pred cceeEEE--CCEEEEEeeecceeehhhcCcccccccc
Confidence 3333333 667777888787 78889988877653
No 385
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.06 E-value=0.11 Score=59.54 Aligned_cols=145 Identities=11% Similarity=0.103 Sum_probs=93.0
Q ss_pred CCeEEEEEcCC----CCEEEEEeCCCcEEEEeCC-----CCeEEEEec-cC--CCC--eEEEEECCCCCEEEEEeCCCeE
Q 003279 553 SKVESCHFSPD----GKLLATGGHDKKAVLWCTE-----SFTVKSTLE-EH--TQW--ITDVRFSPSLSRLATSSADRTV 618 (834)
Q Consensus 553 ~~V~sl~fSpd----g~~Lasgs~Dg~I~IWd~~-----t~~~~~~l~-~h--~~~--I~~l~fspdg~~Latgs~Dg~I 618 (834)
..|..++|.|- ...|+.....+.|.||-+. ..+.+..-. .. .-+ -..+.|+|....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 34899999984 3345556677899999764 223322111 11 111 2367899998888877666665
Q ss_pred EEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc-----eeeEeecCCCeeEEEEecCCCE
Q 003279 619 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-----CAGVFKCQSGATQMRFQPRLGR 693 (834)
Q Consensus 619 ~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~-----~i~~~~~~~~i~~l~~sp~g~~ 693 (834)
.++++......++.-....+.|.|.+|..||.+++++.+..=.-++||-.... .-..|...+.|.++.-.-+ ..
T Consensus 137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d-sq 215 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVD-SQ 215 (671)
T ss_pred EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEecc-ce
Confidence 67777655544544445678899999999999999888777788899865432 2234444566666655543 33
Q ss_pred EEEEE
Q 003279 694 ILAAA 698 (834)
Q Consensus 694 ll~~s 698 (834)
+++++
T Consensus 216 VAvaT 220 (671)
T PF15390_consen 216 VAVAT 220 (671)
T ss_pred EEEEe
Confidence 44444
No 386
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.02 E-value=0.18 Score=53.68 Aligned_cols=187 Identities=9% Similarity=0.018 Sum_probs=107.8
Q ss_pred CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEE-CCCCeE-EEE
Q 003279 639 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD-VETQVC-RLK 716 (834)
Q Consensus 639 ~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwD-l~t~~~-~~~ 716 (834)
.+.+.++++++..+.+....++.-.+|-...+...........+....|++++...++...+....++. ...+.. ...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~ 104 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE 104 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence 688999999998777776334433344333343333333445788889999966666666566666663 333322 222
Q ss_pred EeC--CCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCc------eeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003279 717 LQG--HKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKG------ECIHELSCTGNKFHSCVFHPTFPSLLVIG 784 (834)
Q Consensus 717 l~~--h~~~I~sl~~spdg~~Lasgs----Dg~I~IwDl~s~~~~------~~i~~~~~~~~~I~svafspdg~~L~sgs 784 (834)
+.. -...|+.+.+||||..++... ++.|.|--+...... ..+.........+..+.|.+++.+++.+.
T Consensus 105 v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 105 VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeC
Confidence 221 112899999999999888766 567777766533222 11222223356889999999998777666
Q ss_pred cCC-eEEE-EECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEe
Q 003279 785 CYE-TLEL-WNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 785 ~dg-~I~I-wdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs 825 (834)
..+ .+.. +....+....+..-...+..++...+...++..+
T Consensus 185 ~~~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~~~~~~~~~~t~ 227 (253)
T PF10647_consen 185 SAGGPVVRLVSVDGGPSTPLPSVNLGVPVVAVAASPSTVYVTD 227 (253)
T ss_pred CCCCceeEEEEccCCcccccCCCCCCcceEEeeCCCcEEEEEC
Confidence 554 2333 4554444433322233333344434444444433
No 387
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.00 E-value=0.0011 Score=46.86 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhcCCC
Q 003279 9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVS 39 (834)
Q Consensus 9 ~~~L~~yiy~yl~k~~~~~~A~~~~~e~~~~ 39 (834)
+..|+..|++||.++|+.++|++|.+|.++.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 4578999999999999999999999998875
No 388
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.99 E-value=0.64 Score=50.62 Aligned_cols=268 Identities=9% Similarity=0.069 Sum_probs=122.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe--ccC---CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEH---TQWITDVRFSPSLSRLATSSADRTVRVWDTENP 626 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l--~~h---~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~ 626 (834)
...+.+|.|..+..-+|+|. .+.|. -..+.|+.-... ... .-...+|.|..+ ..+++ +..+.| +...+ +
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~il-~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g~l-l~T~D-g 89 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGTIL-KTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPGLL-LHTTD-G 89 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTEEE-EESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETTEE-EEESS-T
T ss_pred CCceEEEEEecCCEEEEEec-CCEEE-EECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCceE-EEecC-C
Confidence 44799999996665666664 45432 222222221111 111 123667777643 34444 445532 22223 2
Q ss_pred Cceeeeec---cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeE--eecCCCeeEEEEecCCCEEEEEEcCC
Q 003279 627 DYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV--FKCQSGATQMRFQPRLGRILAAAIEN 701 (834)
Q Consensus 627 ~~~i~~~~---~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~--~~~~~~i~~l~~sp~g~~ll~~s~dg 701 (834)
......+. .-.+....+....++ ..++ .+..|.|+. ..+.|+.=.. ......+..+..++++.+++++....
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l-~~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~ 166 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALGDG-SAEL-AGDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGN 166 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEETT-EEEE-EETT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSS
T ss_pred CCCcEEeecCCCCCCCeeEEEEcCCC-cEEE-EcCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECccc
Confidence 22222221 122333444444333 2332 333454332 2222322111 12235577888889988777776666
Q ss_pred eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEE----eecCCCceEEEEEeCCC
Q 003279 702 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE----LSCTGNKFHSCVFHPTF 777 (834)
Q Consensus 702 ~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~----~~~~~~~I~svafspdg 777 (834)
.+.-||--...-...-......|.++.|+|++.+.+++..+.|++=+..... ..... +......+..++|.+++
T Consensus 167 ~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~--~~w~~~~~~~~~~~~~~ld~a~~~~~ 244 (302)
T PF14870_consen 167 FYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDG--ETWSEPIIPIKTNGYGILDLAYRPPN 244 (302)
T ss_dssp EEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEE--EEE---B-TTSS--S-EEEEEESSSS
T ss_pred EEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCc--cccccccCCcccCceeeEEEEecCCC
Confidence 6677876533222222224678999999999998887778888887722110 11111 22234457899999887
Q ss_pred CEEEEEEcCCeEEEEECCCCeEE-E---eccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 778 PSLLVIGCYETLELWNMTENKTL-T---LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 778 ~~L~sgs~dg~I~Iwdl~~~~~~-~---l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
. +.+++..|.| +...+.|+.- + .......+..|.|..+.+-+|. +.||.|--|
T Consensus 245 ~-~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 245 E-IWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp --EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred C-EEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 6 4455555644 3455555433 2 1233567888988766555554 578877655
No 389
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.96 E-value=0.0019 Score=44.77 Aligned_cols=37 Identities=38% Similarity=0.592 Sum_probs=33.3
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 003279 544 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 580 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd 580 (834)
.+..+..|...|.++.|++++.++++++.|+.|++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4566678999999999999999999999999999996
No 390
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.95 E-value=1.1 Score=51.05 Aligned_cols=261 Identities=13% Similarity=0.124 Sum_probs=143.3
Q ss_pred CCEEEEEeCCCcEEEEeCCCCe-----EEEEeccCCCCeEEEEECC----CCCEEEEEeCCCeEEEEecCCCC-------
Q 003279 564 GKLLATGGHDKKAVLWCTESFT-----VKSTLEEHTQWITDVRFSP----SLSRLATSSADRTVRVWDTENPD------- 627 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~-----~~~~l~~h~~~I~~l~fsp----dg~~Latgs~Dg~I~IWDl~s~~------- 627 (834)
...|++|+.+|.++||+..... .+.. ..-..+|..+..-+ .....++.=.-..+.||.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 4589999999999999875432 1111 23456788777643 12223333466778888873211
Q ss_pred -ceeeeeccCC--CCeEEEEEcc----CCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcC
Q 003279 628 -YSLRTFTGHS--TTVMSLDFHP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 628 -~~i~~~~~h~--~~V~sl~fsp----dg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d 700 (834)
..+.....|. .....+++-| .+..++++-+.||.+.+|+-+.-.....+..---...++|.+....|++++.+
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss 195 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSS 195 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCc
Confidence 2233333333 2233344333 23578889999999999998765544444432334567888888899999998
Q ss_pred CeEEEEECCCC--------------------e---EEEEEeCCCCCEEE---EEEcCCCCEEEEEeCCeEEEEEcCCCCC
Q 003279 701 NYISILDVETQ--------------------V---CRLKLQGHKNQVHS---VCWNTSGEYLASVSDELVRVWSIGSGSK 754 (834)
Q Consensus 701 g~I~iwDl~t~--------------------~---~~~~l~~h~~~I~s---l~~spdg~~LasgsDg~I~IwDl~s~~~ 754 (834)
..|..|....- + +..++. -...+.. +.++.....+++-++..+.+.+-. | .
T Consensus 196 ~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~-G-~ 272 (418)
T PF14727_consen 196 WTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLGERSLFCLKDN-G-S 272 (418)
T ss_pred eeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEecceEEEEcCC-C-e
Confidence 88888864210 0 011111 1122333 333334445566666677777653 2 2
Q ss_pred ceeEEEeecCCCceEEEEEeC----CC---CEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEE---EeCCCCEEEEE
Q 003279 755 GECIHELSCTGNKFHSCVFHP----TF---PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLA---ASTVNGMVASA 824 (834)
Q Consensus 755 ~~~i~~~~~~~~~I~svafsp----dg---~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~la---fspdg~~LaSg 824 (834)
.+....+.. .+...+.|.. ++ ..+++++.++.+.||.=.+-..-.- ......++. |..-...|++-
T Consensus 273 l~~~krLd~--~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~--l~~~PVal~v~~~~~~~G~IV~L 348 (418)
T PF14727_consen 273 LRFQKRLDY--NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQ--LPHVPVALSVANFNGLKGLIVSL 348 (418)
T ss_pred EEEEEecCC--ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecC--CCCCCEEEEecccCCCCceEEEE
Confidence 233333322 2222222221 22 2488899999999986333222111 111222332 22334578888
Q ss_pred ecCCcEEE
Q 003279 825 SHDKCVKI 832 (834)
Q Consensus 825 s~DG~I~I 832 (834)
+.||.|.+
T Consensus 349 s~~G~L~v 356 (418)
T PF14727_consen 349 SDEGQLSV 356 (418)
T ss_pred cCCCcEEE
Confidence 88888765
No 391
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.93 E-value=0.68 Score=49.02 Aligned_cols=179 Identities=9% Similarity=0.026 Sum_probs=108.8
Q ss_pred CCeEEEEEccCCCcEEEEEeCCC--cEEEEECCCCceeeEeecCCCe--eEEEEecCCCEEEEEE-cCCeEEEEECCCCe
Q 003279 638 TTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGA--TQMRFQPRLGRILAAA-IENYISILDVETQV 712 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasgs~Dg--~I~lwDl~s~~~i~~~~~~~~i--~~l~~sp~g~~ll~~s-~dg~I~iwDl~t~~ 712 (834)
.....+.|..++ .++-+++.-| .|+.+|+.+++.......+... ..++.. ++.|+.-+ .++...+||.++.+
T Consensus 45 aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 45 AFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp -EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce
Confidence 445678886554 4666766655 7999999999988877765543 334444 34455444 47899999999998
Q ss_pred EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC---CceEEEEEeCCCCEEEEEEcCCe
Q 003279 713 CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG---NKFHSCVFHPTFPSLLVIGCYET 788 (834)
Q Consensus 713 ~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~---~~I~svafspdg~~L~sgs~dg~ 788 (834)
.+.++. ....=..++ .|+..|+.+. ...|+++|..+......+... ... ..++.+.|. +|...+=.-....
T Consensus 122 ~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~-~~g~pv~~LNELE~i-~G~IyANVW~td~ 196 (264)
T PF05096_consen 122 KIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT-DNGRPVSNLNELEYI-NGKIYANVWQTDR 196 (264)
T ss_dssp EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E-ETTEE---EEEEEEE-TTEEEEEETTSSE
T ss_pred EEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE-ECCEECCCcEeEEEE-cCEEEEEeCCCCe
Confidence 888876 344556777 3455555544 778999998776432322222 222 234556665 4544444445668
Q ss_pred EEEEECCCCeEEEec-------------cC---CCCeEEEEEeCCCCEE-EEE
Q 003279 789 LELWNMTENKTLTLS-------------AH---DKLVSSLAASTVNGMV-ASA 824 (834)
Q Consensus 789 I~Iwdl~~~~~~~l~-------------~h---~~~V~~lafspdg~~L-aSg 824 (834)
|...|..+|+++... .+ ....+.|+|.|....| +||
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 999999999987321 01 3568999999877654 454
No 392
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.90 E-value=0.07 Score=55.96 Aligned_cols=169 Identities=15% Similarity=0.139 Sum_probs=113.5
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEE-cCC-eEEEEECCCCeEEEEEeCCCC-
Q 003279 646 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IEN-YISILDVETQVCRLKLQGHKN- 722 (834)
Q Consensus 646 spdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s-~dg-~I~iwDl~t~~~~~~l~~h~~- 722 (834)
..|+.+.+++.+.+ |+++...........+.++|....-++-. .-| ...+||.........+...+.
T Consensus 44 ~~dgs~g~a~~~ea----------Gk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~R 113 (366)
T COG3490 44 ARDGSFGAATLSEA----------GKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGR 113 (366)
T ss_pred ccCCceeEEEEccC----------CceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCc
Confidence 34555555555544 55566666667778888998765544433 334 577899988765554433222
Q ss_pred -CEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---------
Q 003279 723 -QVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY--------- 786 (834)
Q Consensus 723 -~I~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d--------- 786 (834)
..-.=+||+||.+|+... | |.|-|||.+.+ ...+-++..+.-....+.|.+||+.++++...
T Consensus 114 HfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR 191 (366)
T COG3490 114 HFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGR 191 (366)
T ss_pred eeecccccCCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCc
Confidence 122347999999999875 2 48999999854 46777888898889999999999988876541
Q ss_pred ---------CeEEEEECCCCeEE---Eec--cCCCCeEEEEEeCCCCEEEEEec
Q 003279 787 ---------ETLELWNMTENKTL---TLS--AHDKLVSSLAASTVNGMVASASH 826 (834)
Q Consensus 787 ---------g~I~Iwdl~~~~~~---~l~--~h~~~V~~lafspdg~~LaSgs~ 826 (834)
-++.+.|..++.++ ++. .+.-.|..++..+||..++.|-.
T Consensus 192 ~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy 245 (366)
T COG3490 192 TELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQY 245 (366)
T ss_pred cccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence 13455565556554 222 34567889999999887776644
No 393
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.89 E-value=0.003 Score=43.79 Aligned_cols=39 Identities=41% Similarity=0.578 Sum_probs=34.5
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
++.+..+..|...|.++.|.+++.++++++.|+.|++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355667778999999999999999999999999999996
No 394
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.89 E-value=0.032 Score=50.80 Aligned_cols=101 Identities=21% Similarity=0.227 Sum_probs=67.8
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCcee
Q 003279 555 VESCHFSP---DG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 630 (834)
Q Consensus 555 V~sl~fSp---dg-~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i 630 (834)
|+++++.. || +.|++|+.|..|+||+-+ ..+..+..+ +.|++++-... ..|+.+..+|+|-+|+-....+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlW-- 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLW-- 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCcceee--
Confidence 56666554 43 479999999999999854 566666544 56777777665 6799999999999998754332
Q ss_pred eeeccCCCCeEEEEEc---cCCCcEEEEEeCCCcEE
Q 003279 631 RTFTGHSTTVMSLDFH---PSKEDLLCSCDNNSEIR 663 (834)
Q Consensus 631 ~~~~~h~~~V~sl~fs---pdg~~llasgs~Dg~I~ 663 (834)
+.-. ...++++++. -+|..-|++|-.+|.|-
T Consensus 76 RiKS--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKS--KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eecc--CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222 2336666544 34445566787788764
No 395
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.88 E-value=0.74 Score=51.05 Aligned_cols=232 Identities=14% Similarity=0.154 Sum_probs=119.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE---EEEe----ccCCCCeEEEEECCC---CCEEEEEeC-C--------
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTL----EEHTQWITDVRFSPS---LSRLATSSA-D-------- 615 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~---~~~l----~~h~~~I~~l~fspd---g~~Latgs~-D-------- 615 (834)
-+.|+|.|||++|++ ...|.|++++ ..+.. +..+ .........++|+|+ ..+|++... .
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 578999999977664 5699999999 44443 2232 234456899999994 233333322 1
Q ss_pred CeEEEEecCCCC-------ceeeeecc---CCCCeEEEEEccCCCcEEEEEeCC------------CcEEEEECCCCce-
Q 003279 616 RTVRVWDTENPD-------YSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNN------------SEIRYWSINNGSC- 672 (834)
Q Consensus 616 g~I~IWDl~s~~-------~~i~~~~~---h~~~V~sl~fspdg~~llasgs~D------------g~I~lwDl~s~~~- 672 (834)
..|.-|.+.... ..+..+.. .......|.|.|++..++.+|+.. |.|.-.+.. ++.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~p 160 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSIP 160 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcCC
Confidence 245555554431 11122222 233456799999985444444321 234334432 110
Q ss_pred ------------eeEee-cCCCeeEEEEecCCCEEEEEEcC--C--eEEEEECC--------C------C----------
Q 003279 673 ------------AGVFK-CQSGATQMRFQPRLGRILAAAIE--N--YISILDVE--------T------Q---------- 711 (834)
Q Consensus 673 ------------i~~~~-~~~~i~~l~~sp~g~~ll~~s~d--g--~I~iwDl~--------t------~---------- 711 (834)
...+. .......++|+|....|+++... + .|.+..-- . +
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 01111 12335678999985566655432 2 23332110 0 0
Q ss_pred ---eEEEEEeCCCCCEEEEEEcC-------CCCEEEEEe-CCeEEEEEcCCCCCceeEEE-eecCCCceEEEEEeCCCCE
Q 003279 712 ---VCRLKLQGHKNQVHSVCWNT-------SGEYLASVS-DELVRVWSIGSGSKGECIHE-LSCTGNKFHSCVFHPTFPS 779 (834)
Q Consensus 712 ---~~~~~l~~h~~~I~sl~~sp-------dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~-~~~~~~~I~svafspdg~~ 779 (834)
.++..+..| ..+..+.|.. .|.++++.. .+.|....+........... +......+..+++.|||..
T Consensus 241 ~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~L 319 (331)
T PF07995_consen 241 GFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGAL 319 (331)
T ss_dssp TS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEE
T ss_pred CcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeE
Confidence 123334433 5566777754 345666655 66888888865532222222 2233447899999999987
Q ss_pred EEEEEcCCeEE
Q 003279 780 LLVIGCYETLE 790 (834)
Q Consensus 780 L~sgs~dg~I~ 790 (834)
+++...+|.|+
T Consensus 320 yv~~d~~G~iy 330 (331)
T PF07995_consen 320 YVSDDSDGKIY 330 (331)
T ss_dssp EEEE-TTTTEE
T ss_pred EEEECCCCeEe
Confidence 77777777764
No 396
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.027 Score=63.40 Aligned_cols=134 Identities=12% Similarity=0.088 Sum_probs=94.1
Q ss_pred CCEEE-EEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCC--------EEEEEeCCeEEEEEcCCCCCceeEEEe
Q 003279 691 LGRIL-AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE--------YLASVSDELVRVWSIGSGSKGECIHEL 761 (834)
Q Consensus 691 g~~ll-~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~--------~LasgsDg~I~IwDl~s~~~~~~i~~~ 761 (834)
.+.|+ .+.....|+-.|++.|+.+....-+.. |+-+.+.|+.+ .|+.-++..|.-||.+-.... .+...
T Consensus 345 snlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~~ 422 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAVV 422 (644)
T ss_pred cceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeeee
Confidence 34444 344457899999999999999987666 77777877654 455556889999998854321 22222
Q ss_pred ecC----CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecC
Q 003279 762 SCT----GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 762 ~~~----~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~D 827 (834)
..+ ...+.|++-..+| +|++|+.+|.|++||-...... .+.+...+|..|..+.+|++|+..+..
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence 222 3445666666555 6999999999999997332222 677888999999999999987766543
No 397
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.84 E-value=0.17 Score=53.72 Aligned_cols=190 Identities=11% Similarity=0.156 Sum_probs=112.3
Q ss_pred eccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003279 633 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVET 710 (834)
Q Consensus 633 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~--~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t 710 (834)
+.+-...|.++.|+|+.+.++++... ..-.|+=...|..++++.. -.....+.+..++.+.++--.++.++++.+..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~-p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNK-PAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccccceeeCCCcceEEEecCC-CceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 34455669999999998887766654 4444454455888888775 34456678877766666666688888887765
Q ss_pred CeEEE-------EEe--CC-CCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-------CCceEEEE
Q 003279 711 QVCRL-------KLQ--GH-KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-------GNKFHSCV 772 (834)
Q Consensus 711 ~~~~~-------~l~--~h-~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-------~~~I~sva 772 (834)
...+. .+. .+ +.....++|+|....|+.+- -+-+.||.+......-.++....+ -..+.++.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 42221 111 12 55678999999988888887 444555555433211112211111 13466778
Q ss_pred EeCCCCEEE-EEEcCCeEEEEECCCCeEE--EeccCC-------CCeEEEEEeCCCCEEEE
Q 003279 773 FHPTFPSLL-VIGCYETLELWNMTENKTL--TLSAHD-------KLVSSLAASTVNGMVAS 823 (834)
Q Consensus 773 fspdg~~L~-sgs~dg~I~Iwdl~~~~~~--~l~~h~-------~~V~~lafspdg~~LaS 823 (834)
|++....|+ .+..++.|.-.|....-.- .+.... .....|+...+|.+.++
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 887555444 4445556766776655322 222111 12346777777664443
No 398
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.77 E-value=0.38 Score=51.11 Aligned_cols=163 Identities=12% Similarity=0.152 Sum_probs=107.6
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc-CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC
Q 003279 548 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 626 (834)
Q Consensus 548 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~ 626 (834)
+.|-+..|.++.|+|+.+.|++......-.||=..+|+.+.++.- .-.....|.|..++.++++--.+..+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 345555699999999999999888888888887788899888742 1223457888888888888888899998887755
Q ss_pred Ccee---------eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc-eee--Eeec--------CCCeeEEE
Q 003279 627 DYSL---------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAG--VFKC--------QSGATQMR 686 (834)
Q Consensus 627 ~~~i---------~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~-~i~--~~~~--------~~~i~~l~ 686 (834)
...+ ......+.....++|.|....+++ +-+..-+.||.+.... .+. .... -..+..+.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~-aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFV-AKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEE-EEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 3211 112222566789999999776664 4445566666655322 111 0000 13466778
Q ss_pred EecCCCEEEEEEc-CCeEEEEECCCC
Q 003279 687 FQPRLGRILAAAI-ENYISILDVETQ 711 (834)
Q Consensus 687 ~sp~g~~ll~~s~-dg~I~iwDl~t~ 711 (834)
|++..+.+++-+. ++.+...|....
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC
Confidence 8876666555554 566777776644
No 399
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.0055 Score=70.05 Aligned_cols=93 Identities=17% Similarity=0.238 Sum_probs=77.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeE-EEEEccCCCcEEEEEeCCCcEEEEECCCCce
Q 003279 594 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 672 (834)
Q Consensus 594 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~-sl~fspdg~~llasgs~Dg~I~lwDl~s~~~ 672 (834)
.-.|.-+.|+|...+||++..+|.|.++.+.- ..+.++.-|...++ +++|.|||+ +++.|-.||+|++.|++++..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~--qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNW--QRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEecc--ceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCc
Confidence 34578899999999999999999999999883 23666776777777 999999966 888999999999999999988
Q ss_pred eeE--eecCCCeeEEEEec
Q 003279 673 AGV--FKCQSGATQMRFQP 689 (834)
Q Consensus 673 i~~--~~~~~~i~~l~~sp 689 (834)
+.. +.....|.++.|.+
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 877 44567788888864
No 400
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.75 Score=48.76 Aligned_cols=194 Identities=13% Similarity=0.100 Sum_probs=115.3
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeec-cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc
Q 003279 593 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 671 (834)
Q Consensus 593 h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~-~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~ 671 (834)
-.+-+.++.++. ++.+.+.++.-++|.|+.++..+...-. ...+.-.++..+ |+ +++.+..|.-+.++|+.+..
T Consensus 85 ~~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn-~aYVadlddgfLivdvsdps 159 (370)
T COG5276 85 ARDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GN-YAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--CC-EEEEeeccCcEEEEECCCCC
Confidence 345577788864 4788888888899999998775433222 222445566655 44 56666656667788887643
Q ss_pred ---eeeEeecCCC-eeEEEEecCCCEEEEEEcCCeEEEEECCCCe---EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeE
Q 003279 672 ---CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQV---CRLKLQGHKNQVHSVCWNTSGEYLASVSDELV 744 (834)
Q Consensus 672 ---~i~~~~~~~~-i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~---~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I 744 (834)
....+...+. ...++++ |++-+++..|+.+.+.|+.... .+.... ....+.++..+++-.+++...+| +
T Consensus 160 sP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy~eg-v 235 (370)
T COG5276 160 SPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVYDEG-V 235 (370)
T ss_pred CceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEcccc-e
Confidence 2223333222 3455555 6778888899999999998753 222222 23367888888776666655555 6
Q ss_pred EEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 745 RVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 745 ~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
.+-|....+....+..... ..++..-.+.-.+++.++...+.-+-+.|+.+
T Consensus 236 livd~s~~ssp~~~gsyet-~~p~~~s~v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 236 LIVDVSGPSSPTVFGSYET-SNPVSISTVPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred EEEecCCCCCceEeecccc-CCcccccceecccceeeeeccccCceeEeccC
Confidence 6777776643333333322 22221113333455566666666666666654
No 401
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.039 Score=62.18 Aligned_cols=142 Identities=16% Similarity=0.177 Sum_probs=101.7
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCE-------EEEEEcCCeEEEEECCCC-e-EEEEEe
Q 003279 648 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR-------ILAAAIENYISILDVETQ-V-CRLKLQ 718 (834)
Q Consensus 648 dg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~-------ll~~s~dg~I~iwDl~t~-~-~~~~l~ 718 (834)
+.+.++.++.....|+-.|++.|+.+...+.+..|.-+.+.|+.+. -++|-.++.|.-||.+-. . .+....
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 3445566666677899999999999999999888999999887542 467778899999998843 2 222222
Q ss_pred CC----CCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003279 719 GH----KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 793 (834)
Q Consensus 719 ~h----~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwd 793 (834)
+| .....|++-..+|. |++|+ +|.|++||- .+. .....+++-+.+|..|..+.+|++|++ +++..|.+.+
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~-IvvgS~~GdIRLYdr-i~~--~AKTAlPgLG~~I~hVdvtadGKwil~-Tc~tyLlLi~ 498 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGY-IVVGSLKGDIRLYDR-IGR--RAKTALPGLGDAIKHVDVTADGKWILA-TCKTYLLLID 498 (644)
T ss_pred ccccccccccceeeecCCce-EEEeecCCcEEeehh-hhh--hhhhcccccCCceeeEEeeccCcEEEE-ecccEEEEEE
Confidence 22 34566777666665 55556 999999997 331 333456777899999999999997665 4455676666
Q ss_pred C
Q 003279 794 M 794 (834)
Q Consensus 794 l 794 (834)
+
T Consensus 499 t 499 (644)
T KOG2395|consen 499 T 499 (644)
T ss_pred E
Confidence 5
No 402
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.68 E-value=0.34 Score=54.87 Aligned_cols=88 Identities=24% Similarity=0.385 Sum_probs=56.7
Q ss_pred EEEEcCCCCEEEEEeCCCcEEE---EeCC-----CCeEEEE----eccCC-CCeEEEEECC-----------CCCEEEEE
Q 003279 557 SCHFSPDGKLLATGGHDKKAVL---WCTE-----SFTVKST----LEEHT-QWITDVRFSP-----------SLSRLATS 612 (834)
Q Consensus 557 sl~fSpdg~~Lasgs~Dg~I~I---Wd~~-----t~~~~~~----l~~h~-~~I~~l~fsp-----------dg~~Latg 612 (834)
+++.+|++++||.+..+..|.+ |+.. ....... +.... ..|+++.|-| |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4788999999999988776665 6431 1122212 11111 5677776643 45789999
Q ss_pred eCCCeEEEEecCCCCceeeeeccCCCCeEEEEEc
Q 003279 613 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 646 (834)
Q Consensus 613 s~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fs 646 (834)
..+|.|++|.... .. +..-.-|..+|..|.+.
T Consensus 86 ~ssG~vrfyte~G-~L-L~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTENG-VL-LLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEeccc-hH-HHHHhcCccceEEEEec
Confidence 9999999998853 32 33334467777777664
No 403
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.67 E-value=0.0019 Score=65.49 Aligned_cols=141 Identities=13% Similarity=0.063 Sum_probs=83.3
Q ss_pred EEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCcee-eEee-cCCCeeE-
Q 003279 608 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFK-CQSGATQ- 684 (834)
Q Consensus 608 ~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i-~~~~-~~~~i~~- 684 (834)
.|..-+.|+.|+-+++..-+...+....|...-.-+.+ ..-+++|+.+|.|++|+..-.... ..+. ....+.+
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~----~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTA----SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG 107 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeeccc----CceEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence 34455678888888877544333332223222111222 224557888999999988732111 1111 1122222
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC-CCEEEEEEcCCCCEEEEE--e-CCeEEEEEcCCC
Q 003279 685 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-NQVHSVCWNTSGEYLASV--S-DELVRVWSIGSG 752 (834)
Q Consensus 685 l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~-~~I~sl~~spdg~~Lasg--s-Dg~I~IwDl~s~ 752 (834)
+....++.+..+++.+|.|+.|++.-.+.+.....|. .++..+..+..+++|+++ + |..++.|++...
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 2223344577888899999999999888777776677 555555555566666665 4 667777777543
No 404
>PHA02713 hypothetical protein; Provisional
Probab=96.58 E-value=0.13 Score=61.14 Aligned_cols=172 Identities=7% Similarity=-0.042 Sum_probs=84.6
Q ss_pred CcEEEEEeCC------CcEEEEECCCCceeeEeecCCC-eeEEEEecCCCEEEEEEcCC-----eEEEEECCCCeEEE--
Q 003279 650 EDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIEN-----YISILDVETQVCRL-- 715 (834)
Q Consensus 650 ~~llasgs~D------g~I~lwDl~s~~~i~~~~~~~~-i~~l~~sp~g~~ll~~s~dg-----~I~iwDl~t~~~~~-- 715 (834)
+.+++.|+.+ ..+..||..++.....-....+ .......-++..+++|+.++ .+..||..+.+-..
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence 4577777743 3477889887654322211111 11122233556667777653 48889988753221
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEe-CC-----------------------eEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003279 716 KLQGHKNQVHSVCWNTSGEYLASVS-DE-----------------------LVRVWSIGSGSKGECIHELSCTGNKFHSC 771 (834)
Q Consensus 716 ~l~~h~~~I~sl~~spdg~~Lasgs-Dg-----------------------~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 771 (834)
.+.........+. -+|++++.|+ ++ .+..||..+..- ..+..+.. ......
T Consensus 384 ~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W-~~v~~m~~--~r~~~~ 458 (557)
T PHA02713 384 DMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW-ETLPNFWT--GTIRPG 458 (557)
T ss_pred CCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE-eecCCCCc--ccccCc
Confidence 1111111111222 2566666665 42 467787766521 11111111 111122
Q ss_pred EEeCCCCEEEEEEcC------CeEEEEECCC-CeEEEecc---CCCCeEEEEEeCCCCEEEEEecCC
Q 003279 772 VFHPTFPSLLVIGCY------ETLELWNMTE-NKTLTLSA---HDKLVSSLAASTVNGMVASASHDK 828 (834)
Q Consensus 772 afspdg~~L~sgs~d------g~I~Iwdl~~-~~~~~l~~---h~~~V~~lafspdg~~LaSgs~DG 828 (834)
+..-++...++|+.+ ..+..||..+ .+...+.. .......+. -++++.++|+.||
T Consensus 459 ~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~ 523 (557)
T PHA02713 459 VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYES 523 (557)
T ss_pred EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecc
Confidence 223345555555543 2478899987 55543222 222222222 3678889999888
No 405
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.58 E-value=0.22 Score=51.04 Aligned_cols=163 Identities=15% Similarity=0.128 Sum_probs=103.0
Q ss_pred EEEEEeCCCcEEEEeCC--CCeEEEEecc-----CCCCeEEEEECCCCCEEEEEeC---------CCeEEEEecCCCCce
Q 003279 566 LLATGGHDKKAVLWCTE--SFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSA---------DRTVRVWDTENPDYS 629 (834)
Q Consensus 566 ~Lasgs~Dg~I~IWd~~--t~~~~~~l~~-----h~~~I~~l~fspdg~~Latgs~---------Dg~I~IWDl~s~~~~ 629 (834)
+.+.++..-.|.=||.. ..+...++.. .....++-..+|+|++++-.-. .|.++.|-....
T Consensus 73 ~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~--- 149 (310)
T KOG4499|consen 73 FAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ--- 149 (310)
T ss_pred EEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC---
Confidence 34444443445557732 3333344211 2345667778899998443222 245555554421
Q ss_pred eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE--CCCCc-----eeeEeec-----CCCeeEEEEecCCCEEEEE
Q 003279 630 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS--INNGS-----CAGVFKC-----QSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 630 i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwD--l~s~~-----~i~~~~~-----~~~i~~l~~sp~g~~ll~~ 697 (834)
+..+...-.--+.++|+.+.+.+.++-+.+-+|.-|| ..+|. .+..++. +-....+++..+|..++++
T Consensus 150 v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~ 229 (310)
T KOG4499|consen 150 VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVAT 229 (310)
T ss_pred ceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEE
Confidence 2223333344567899988887888888888998887 55543 2222222 1113345667778888888
Q ss_pred EcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcC
Q 003279 698 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 731 (834)
Q Consensus 698 s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~sp 731 (834)
-..++|..+|..+|+.+.++.-....|+|+||--
T Consensus 230 ~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 230 FNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 8889999999999999999998899999999964
No 406
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.53 E-value=1.1 Score=49.58 Aligned_cols=231 Identities=12% Similarity=0.139 Sum_probs=118.5
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEecCCCC-ceeee----eccCCCCeEEEEEccC---CCcEEEEEeCC--------
Q 003279 596 WITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRT----FTGHSTTVMSLDFHPS---KEDLLCSCDNN-------- 659 (834)
Q Consensus 596 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~-~~i~~----~~~h~~~V~sl~fspd---g~~llasgs~D-------- 659 (834)
..+.|+|.||+++|++ ...|.|++++..... ..+.. ..........++++|+ ...+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 3578999999877665 569999999933221 11222 2234467899999994 23343333321
Q ss_pred CcEEEEECCCC--c-----ee-eEeec----CCCeeEEEEecCCCEEEEEEcCC-------------eEEEEECCCCe--
Q 003279 660 SEIRYWSINNG--S-----CA-GVFKC----QSGATQMRFQPRLGRILAAAIEN-------------YISILDVETQV-- 712 (834)
Q Consensus 660 g~I~lwDl~s~--~-----~i-~~~~~----~~~i~~l~~sp~g~~ll~~s~dg-------------~I~iwDl~t~~-- 712 (834)
..|.-|.+..+ . .+ ..... ......+.|.|++..+++.+..+ .|.-++.....
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~ 161 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPA 161 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCC
Confidence 24555555433 1 11 11111 23456799999986665555422 23333432110
Q ss_pred -----------EEEEEeCCCCCEEEEEEcCC-CCEEEEEe--CC--eEEEEEcCCCCC----------------------
Q 003279 713 -----------CRLKLQGHKNQVHSVCWNTS-GEYLASVS--DE--LVRVWSIGSGSK---------------------- 754 (834)
Q Consensus 713 -----------~~~~l~~h~~~I~sl~~spd-g~~Lasgs--Dg--~I~IwDl~s~~~---------------------- 754 (834)
...--.++. ....++|+|. |.++++-. +. .|.+. ..+..
T Consensus 162 dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i--~~G~nYGWP~~~~~~~~~~~~~~~~~~ 238 (331)
T PF07995_consen 162 DNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRI--EPGGNYGWPYCEGGPKYSGPPIGDAPS 238 (331)
T ss_dssp TSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE---TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred CCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEe--ccCCcCCCCCCcCCCCCCCCccccccC
Confidence 000011122 3457999998 76665533 33 34433 22210
Q ss_pred ----ceeEEEeecCCCceEEEEEeCC-------CCEEEEEEcCCeEEEEECCCCeEE----E-eccCCCCeEEEEEeCCC
Q 003279 755 ----GECIHELSCTGNKFHSCVFHPT-------FPSLLVIGCYETLELWNMTENKTL----T-LSAHDKLVSSLAASTVN 818 (834)
Q Consensus 755 ----~~~i~~~~~~~~~I~svafspd-------g~~L~sgs~dg~I~Iwdl~~~~~~----~-l~~h~~~V~~lafspdg 818 (834)
..++..+..| ..+..+.|... +.+|++.-..+.|....++.+..+ . +......+..|++.|||
T Consensus 239 ~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG 317 (331)
T PF07995_consen 239 CPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG 317 (331)
T ss_dssp -TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS
T ss_pred CCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC
Confidence 0122223322 44556666543 334444444558888888755333 2 22345589999999999
Q ss_pred CEEEEEecCCcEE
Q 003279 819 GMVASASHDKCVK 831 (834)
Q Consensus 819 ~~LaSgs~DG~I~ 831 (834)
.++++.+.+|.|+
T Consensus 318 ~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 318 ALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEE-TTTTEE
T ss_pred eEEEEECCCCeEe
Confidence 9999888888874
No 407
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.52 E-value=0.89 Score=48.66 Aligned_cols=197 Identities=15% Similarity=0.127 Sum_probs=112.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCC-------CCeEEEEecc-----CCCCeEEEEECCCCC------------EEE
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTE-------SFTVKSTLEE-----HTQWITDVRFSPSLS------------RLA 610 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~-------t~~~~~~l~~-----h~~~I~~l~fspdg~------------~La 610 (834)
-+.|+|+|.+.+-++....+...+||.. ....+.++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4679999999888887788999999986 1223344432 234578888875322 367
Q ss_pred EEeCCCeEEEEecCCCCc----eeeeec-cCCCCe-EEEEEcc--CCCcEEEEEeCCCcEEEEECCCCceee--EeecC-
Q 003279 611 TSSADRTVRVWDTENPDY----SLRTFT-GHSTTV-MSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAG--VFKCQ- 679 (834)
Q Consensus 611 tgs~Dg~I~IWDl~s~~~----~i~~~~-~h~~~V-~sl~fsp--dg~~llasgs~Dg~I~lwDl~s~~~i~--~~~~~- 679 (834)
.+++||+|.-|...-... ....+. .....| ..+++.. .+..|.++--..++|.+||-.=.+... .+...
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 889999999998532221 112222 112333 3455543 245455554567889999854322110 01100
Q ss_pred -------CC---------eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe--CCCCCEEEEEEcC------CCCE
Q 003279 680 -------SG---------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNT------SGEY 735 (834)
Q Consensus 680 -------~~---------i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~--~h~~~I~sl~~sp------dg~~ 735 (834)
-. |+-..-.++...=+.+..-|.|.+||+.- ..++++. +.-...+.|+..| .+.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-QLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC-cEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 00 11111122222233334457899999874 4555553 2333455676655 4566
Q ss_pred EEEEe-CCeEEEEEcCCC
Q 003279 736 LASVS-DELVRVWSIGSG 752 (834)
Q Consensus 736 Lasgs-Dg~I~IwDl~s~ 752 (834)
|+.-- ||+|.+||..++
T Consensus 264 LVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSG 281 (336)
T ss_pred EEeecCCceeEEecCCCC
Confidence 66554 999999999887
No 408
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.50 E-value=0.45 Score=51.75 Aligned_cols=186 Identities=12% Similarity=0.114 Sum_probs=93.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE-EEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeee
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 633 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~-~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~ 633 (834)
...+....++..++ ++..|.|+.=. +.++. ......-.+.+..+..++||+++++++......-||........ ..
T Consensus 106 ~~~i~~l~~~~~~l-~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~-~~ 182 (302)
T PF14870_consen 106 PFGITALGDGSAEL-AGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQP-HN 182 (302)
T ss_dssp EEEEEEEETTEEEE-EETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EE-EE
T ss_pred eeEEEEcCCCcEEE-EcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceE-Ec
Confidence 33444444443333 34445543322 22322 23334556789999999999999998777777788876433322 22
Q ss_pred ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC-CCceeeE----e-ecCCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003279 634 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGV----F-KCQSGATQMRFQPRLGRILAAAIENYISILD 707 (834)
Q Consensus 634 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~-s~~~i~~----~-~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwD 707 (834)
......|..+.|.|++. +.+ ....|.|++=+.. ..+.-.. + .....+..++|.+++...+ ++..|.+. ..
T Consensus 183 r~~~~riq~~gf~~~~~-lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa-~gg~G~l~-~S 258 (302)
T PF14870_consen 183 RNSSRRIQSMGFSPDGN-LWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWA-VGGSGTLL-VS 258 (302)
T ss_dssp --SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEE-EESTT-EE-EE
T ss_pred cCccceehhceecCCCC-EEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEE-EeCCccEE-Ee
Confidence 23467899999999966 433 3478888887722 2211111 1 1123478899998855555 55555433 34
Q ss_pred CCCCeEEEEEe---CCCCCEEEEEEcCCCCEEEEEeCCeEEEE
Q 003279 708 VETQVCRLKLQ---GHKNQVHSVCWNTSGEYLASVSDELVRVW 747 (834)
Q Consensus 708 l~t~~~~~~l~---~h~~~I~sl~~spdg~~LasgsDg~I~Iw 747 (834)
...|+.-.... .-...++.|.|.++.+-++.|.+|.|.-|
T Consensus 259 ~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 259 TDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp SSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred CCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 44443333322 33556889999888888888889977655
No 409
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.48 E-value=2.2 Score=48.38 Aligned_cols=146 Identities=11% Similarity=0.064 Sum_probs=82.7
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCCe-EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCce--eEE
Q 003279 683 TQMRFQPRLGRILAAAIENYISILDVETQV-CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGE--CIH 759 (834)
Q Consensus 683 ~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~-~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~--~i~ 759 (834)
..+...+++..++++.....++-||--... .... ......+.++.|.+++.+++++.+|.+.+ ....+.... .+.
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~-~~~~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~~~f~ 319 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHN-RASARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEEDFDFE 319 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecCCCCcceEEec-CCCccceeeeeEcCCCCEEEEeCCceEEE-ecCCCCccccccee
Confidence 334556666555554443333334432211 1111 22345688999999999998887776544 333332111 222
Q ss_pred Eeec--CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-Ee---ccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 760 ELSC--TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL---SAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 760 ~~~~--~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l---~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
.... ....+..+.|.+++. +++++..|.+.... ..++.- .. ..-...++.+.|.++++.+++| .+|.|.-|
T Consensus 320 ~~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 320 EADIKSRGFGILDVGYRSKKE-AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred ecccCCCCcceEEEEEcCCCc-EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 2222 224588899998776 66677777666553 444433 22 2334578899998776666654 77877655
No 410
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.45 E-value=0.15 Score=46.46 Aligned_cols=100 Identities=21% Similarity=0.207 Sum_probs=69.4
Q ss_pred eEEEE---EccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003279 640 VMSLD---FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 716 (834)
Q Consensus 640 V~sl~---fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~ 716 (834)
|++++ |.-+|..-|++|+.|..|++|+-. ..+..+.....+.+++-... ..|+.+..+|+|-+|+-.. .+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eeee
Confidence 44554 445666778899999999999764 67778888888999888776 7799999999999998643 3334
Q ss_pred EeCCCCCEEEEEEcC-CC---CEEEEEe-CCeEE
Q 003279 717 LQGHKNQVHSVCWNT-SG---EYLASVS-DELVR 745 (834)
Q Consensus 717 l~~h~~~I~sl~~sp-dg---~~Lasgs-Dg~I~ 745 (834)
++. +..++++++.. ++ .-|++|- +|.|-
T Consensus 77 iKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 442 33466665543 32 1445554 77664
No 411
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.44 E-value=2.2 Score=47.93 Aligned_cols=195 Identities=10% Similarity=0.056 Sum_probs=107.0
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccC--CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCC-
Q 003279 561 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS- 637 (834)
Q Consensus 561 Spdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h--~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~- 637 (834)
.-|| .++++..||.|.-.|.++++.+.....- ...+.+-.+..+|+ |+.++.++.++.+|..++.. +..+....
T Consensus 66 ~~dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~-~W~~~~~~~ 142 (370)
T COG1520 66 DGDG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTL-VWSRNVGGS 142 (370)
T ss_pred eeCC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcE-EEEEecCCC
Confidence 3355 4555577888888898888876433222 12333333333665 77888899899999976665 33333222
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCC-eeEEEEe--cCCCEEEEEEc--CCeEEEEECCCCe
Q 003279 638 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQ--PRLGRILAAAI--ENYISILDVETQV 712 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~-i~~l~~s--p~g~~ll~~s~--dg~I~iwDl~t~~ 712 (834)
..+..-.+..++ .++.++.++.+...|..+++....+..... -..+... .....++.+.. ++.+.-+|.+++.
T Consensus 143 ~~~~~~~v~~~~--~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 143 PYYASPPVVGDG--TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred eEEecCcEEcCc--EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCc
Confidence 112222222232 344454689999999999988877665332 0011111 23345556655 6678888888887
Q ss_pred EEEEEeCCC----CCE------EEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeec
Q 003279 713 CRLKLQGHK----NQV------HSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC 763 (834)
Q Consensus 713 ~~~~l~~h~----~~I------~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~ 763 (834)
.....+.+. ..+ ..-...-++..++.+.++.+...|..++ +.+-.+..
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G---~~~W~~~~ 278 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTG---ELIWSFPA 278 (370)
T ss_pred EeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCC---ceEEEEec
Confidence 776643111 111 0001111233333333777888888887 44444443
No 412
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.44 E-value=0.77 Score=56.36 Aligned_cols=225 Identities=10% Similarity=0.038 Sum_probs=116.2
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCC--------eEEEEECC----------------CCCEEEEEeCCCeEE
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--------ITDVRFSP----------------SLSRLATSSADRTVR 619 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~--------I~~l~fsp----------------dg~~Latgs~Dg~I~ 619 (834)
+..|++++.++.|+-.|..+|+.+-.+...... +..+.+.. .+..|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 446777778889999999999888776432211 12233321 234788898999999
Q ss_pred EEecCCCCceeeeeccCCCCeE-------------EEEEcc--CCCcEEEEEeC----------CCcEEEEECCCCceee
Q 003279 620 VWDTENPDYSLRTFTGHSTTVM-------------SLDFHP--SKEDLLCSCDN----------NSEIRYWSINNGSCAG 674 (834)
Q Consensus 620 IWDl~s~~~~i~~~~~h~~~V~-------------sl~fsp--dg~~llasgs~----------Dg~I~lwDl~s~~~i~ 674 (834)
-.|.++++.+.. +. ..+.|. .+.-.| .++ .+++++. +|.|+-+|+++|+.+.
T Consensus 274 ALDA~TGk~~W~-fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTGKLCED-FG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCCCEEEE-ec-CCCceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 999998876432 21 111110 001111 123 3444432 6889999999999999
Q ss_pred EeecCCCeeEEEEecCCCEEEEEEcCC-eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003279 675 VFKCQSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 752 (834)
Q Consensus 675 ~~~~~~~i~~l~~sp~g~~ll~~s~dg-~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 752 (834)
.+........- ..+.+.....++... ....||.+.+....-.- ... ..+....+...... .+.|.-.|.+++
T Consensus 351 ~~~~g~p~~~~-~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptG-n~~----pd~~g~~r~~~~n~y~~slvALD~~TG 424 (764)
T TIGR03074 351 AWDPGNPDPTA-PPAPGETYTRNTPNSWSVASYDEKLGLVYLPMG-NQT----PDQWGGDRTPADEKYSSSLVALDATTG 424 (764)
T ss_pred EEecCCCCccc-CCCCCCEeccCCCCccCceEEcCCCCeEEEeCC-Ccc----ccccCCccccCcccccceEEEEeCCCC
Confidence 88753221110 011222222122211 34455665554432211 111 11100000000001 345666666666
Q ss_pred CCceeEEEeecCCC---------ceEEEEEeC-CC---CEEEEEEcCCeEEEEECCCCeEE
Q 003279 753 SKGECIHELSCTGN---------KFHSCVFHP-TF---PSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 753 ~~~~~i~~~~~~~~---------~I~svafsp-dg---~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
+ ..-.+..... ...-+.+.. +| +.++.++.+|.++++|.++++.+
T Consensus 425 k---~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 425 K---ERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred c---eEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 3 2222221111 111122322 45 36888999999999999999877
No 413
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.42 E-value=0.84 Score=50.98 Aligned_cols=188 Identities=15% Similarity=0.176 Sum_probs=116.8
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECC----CCCE--EEEEe-CC---CeEEEEecCCCCceee
Q 003279 562 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP----SLSR--LATSS-AD---RTVRVWDTENPDYSLR 631 (834)
Q Consensus 562 pdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fsp----dg~~--Latgs-~D---g~I~IWDl~s~~~~i~ 631 (834)
|...+|+....++-+.+||+.. +.+..+. .+.++.+.... +++. |+.++ .+ .+|++|.+......+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~G-k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDG-KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCCC-cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 3456788888889999999765 5555553 23344333321 2332 44444 32 4799998874332333
Q ss_pred eecc-------CCCCeEEEEEc--c-CCCcEEEEEeCCCcEEEEECC---CC----ceeeEeecCCCeeEEEEecCCCEE
Q 003279 632 TFTG-------HSTTVMSLDFH--P-SKEDLLCSCDNNSEIRYWSIN---NG----SCAGVFKCQSGATQMRFQPRLGRI 694 (834)
Q Consensus 632 ~~~~-------h~~~V~sl~fs--p-dg~~llasgs~Dg~I~lwDl~---s~----~~i~~~~~~~~i~~l~~sp~g~~l 694 (834)
.+.. ....++.+|+. + ++..+++..+.+|.+..|.+. .+ +.++.|...+.+..+........|
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRL 222 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCE
Confidence 3321 12347778764 3 456677788889988888774 23 467888888899999999999999
Q ss_pred EEEEcCCeEEEEECCC-----CeEEEEEeC--CCCCEEEEEEcC--CC-CEEEEEe--CCeEEEEEcCCC
Q 003279 695 LAAAIENYISILDVET-----QVCRLKLQG--HKNQVHSVCWNT--SG-EYLASVS--DELVRVWSIGSG 752 (834)
Q Consensus 695 l~~s~dg~I~iwDl~t-----~~~~~~l~~--h~~~I~sl~~sp--dg-~~Lasgs--Dg~I~IwDl~s~ 752 (834)
+++-++..|.-|+.+. +..+....+ ....|..|++-. ++ .||++++ +++..||+....
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999999999999872 233333322 345778887743 44 3677666 889999998764
No 414
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.35 E-value=2.5 Score=47.64 Aligned_cols=220 Identities=10% Similarity=0.067 Sum_probs=104.2
Q ss_pred CCCEEEEEe-CCCeEEEEecCCCCc---eeeeecc---CC----CCeEEEEEccCCCcEEEEE--eC----CCcEEEEEC
Q 003279 605 SLSRLATSS-ADRTVRVWDTENPDY---SLRTFTG---HS----TTVMSLDFHPSKEDLLCSC--DN----NSEIRYWSI 667 (834)
Q Consensus 605 dg~~Latgs-~Dg~I~IWDl~s~~~---~i~~~~~---h~----~~V~sl~fspdg~~llasg--s~----Dg~I~lwDl 667 (834)
+.++|+..+ ..+.|+|+|+.+... ..+.+.. +. .....+..-|+|+ +++++ +. -|.+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~-imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGR-IMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCcc-EEEEeccCCCCCCCCcEEEEcC
Confidence 456777766 678999999984321 1222221 11 1222334446765 44444 22 356888888
Q ss_pred CCCceeeEeecCCC----eeEEEEecCCCEEEEEEc--------------------CCeEEEEECCCCeEEEEEeCCCC-
Q 003279 668 NNGSCAGVFKCQSG----ATQMRFQPRLGRILAAAI--------------------ENYISILDVETQVCRLKLQGHKN- 722 (834)
Q Consensus 668 ~s~~~i~~~~~~~~----i~~l~~sp~g~~ll~~s~--------------------dg~I~iwDl~t~~~~~~l~~h~~- 722 (834)
++.+.......... -..+-|.|..+.+++... ...+++||+.+.+.+.++.-...
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 88777776665322 466778888888887643 34799999999999988875332
Q ss_pred -CEEEEEEc--CCCCEEEEEe--CCeEEEEEc-CCCCC-ceeEEEeecC-----------------CCceEEEEEeCCCC
Q 003279 723 -QVHSVCWN--TSGEYLASVS--DELVRVWSI-GSGSK-GECIHELSCT-----------------GNKFHSCVFHPTFP 778 (834)
Q Consensus 723 -~I~sl~~s--pdg~~Lasgs--Dg~I~IwDl-~s~~~-~~~i~~~~~~-----------------~~~I~svafspdg~ 778 (834)
.+..|.|. |+..+=+++. ...|..|-- ..+.- .+.+..+... ..-|+.|.+|.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 34466664 4455544444 555555544 33210 1112222111 24578999999999
Q ss_pred EEEEEEc-CCeEEEEECCCCe---EE-E-ecc---------------CCCCeEEEEEeCCCCEEEEEe
Q 003279 779 SLLVIGC-YETLELWNMTENK---TL-T-LSA---------------HDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 779 ~L~sgs~-dg~I~Iwdl~~~~---~~-~-l~~---------------h~~~V~~lafspdg~~LaSgs 825 (834)
+|++++. .|.|+.||+.... .+ . ..+ -.+...-|..|.||+.|+..+
T Consensus 325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 9998876 6799999997642 22 1 111 112335678889998777654
No 415
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.25 E-value=1.6 Score=45.89 Aligned_cols=243 Identities=11% Similarity=-0.009 Sum_probs=151.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeee-
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF- 633 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~- 633 (834)
-..++-.+||..-+++...+.|--.|..+++....--+....-..|..-||+..-++-+.. -|.-.|-++.+.....+
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc
Confidence 4567888999988899888888888999998887766666677788899998877765443 45555555433222111
Q ss_pred -ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003279 634 -TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVET 710 (834)
Q Consensus 634 -~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~--~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t 710 (834)
...........|.+.|. +.+++.. |.---.|.. ...+.++.. ......+|..|+|...++.-.++.|-..|..+
T Consensus 143 ~~~a~~nlet~vfD~~G~-lWFt~q~-G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~ 219 (353)
T COG4257 143 LEHADANLETAVFDPWGN-LWFTGQI-GAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFA 219 (353)
T ss_pred cccCCCcccceeeCCCcc-EEEeecc-ccceecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccccc
Confidence 12235677888998876 4446542 211111111 112222322 35577899999999998888899999999887
Q ss_pred CeEEEEE-e-CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003279 711 QVCRLKL-Q-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 787 (834)
Q Consensus 711 ~~~~~~l-~-~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg 787 (834)
+.....- . ........+--+|.|+.-++.. .+.+..||-.... -.-..+......-.++.....++.-++-...+
T Consensus 220 ~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--W~eypLPgs~arpys~rVD~~grVW~sea~ag 297 (353)
T COG4257 220 GHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--WIEYPLPGSKARPYSMRVDRHGRVWLSEADAG 297 (353)
T ss_pred CCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc--ceeeeCCCCCCCcceeeeccCCcEEeeccccC
Confidence 7322111 1 1122344555667777777765 7788888766542 22233444555566666666666444444556
Q ss_pred eEEEEECCCCeEEEec
Q 003279 788 TLELWNMTENKTLTLS 803 (834)
Q Consensus 788 ~I~Iwdl~~~~~~~l~ 803 (834)
.|.-+|-++.....+.
T Consensus 298 ai~rfdpeta~ftv~p 313 (353)
T COG4257 298 AIGRFDPETARFTVLP 313 (353)
T ss_pred ceeecCcccceEEEec
Confidence 7777777666555443
No 416
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.11 E-value=1.2 Score=47.23 Aligned_cols=140 Identities=17% Similarity=0.160 Sum_probs=87.6
Q ss_pred CeEEEEECCCCCEEEEEe---CCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE-CCCCc
Q 003279 596 WITDVRFSPSLSRLATSS---ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS-INNGS 671 (834)
Q Consensus 596 ~I~~l~fspdg~~Latgs---~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwD-l~s~~ 671 (834)
.+...++++++..++... ....++++...... ...+. ...+....|++++. +.+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~--~~~~~--g~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV--RPVLT--GGSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc--eeecc--CCccccccccCCCC-EEEEEcCCCceEEEEecCCCc
Confidence 688999999999887766 33456666554322 22222 23788889999955 554545455555553 33333
Q ss_pred eee-Eeec--C-CCeeEEEEecCCCEEEEEEc---CCeEEEEECC---CC------eEEEEEeCCCCCEEEEEEcCCCCE
Q 003279 672 CAG-VFKC--Q-SGATQMRFQPRLGRILAAAI---ENYISILDVE---TQ------VCRLKLQGHKNQVHSVCWNTSGEY 735 (834)
Q Consensus 672 ~i~-~~~~--~-~~i~~l~~sp~g~~ll~~s~---dg~I~iwDl~---t~------~~~~~l~~h~~~I~sl~~spdg~~ 735 (834)
... .... . ..|..+.++|||..++.... ++.|.+--+. .+ ............+..+.|.+++.+
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 221 1111 1 27999999999999888774 4667666443 22 111122223467899999999998
Q ss_pred EEEEe
Q 003279 736 LASVS 740 (834)
Q Consensus 736 Lasgs 740 (834)
++.+.
T Consensus 180 ~V~~~ 184 (253)
T PF10647_consen 180 VVLGR 184 (253)
T ss_pred EEEeC
Confidence 88877
No 417
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.07 E-value=2.4 Score=47.69 Aligned_cols=144 Identities=11% Similarity=0.111 Sum_probs=80.8
Q ss_pred CCeEEEEEcCCCCEEEEEe-----------CCC-cEEEEeCCC--Ce--EEEEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 003279 553 SKVESCHFSPDGKLLATGG-----------HDK-KAVLWCTES--FT--VKSTLEEHTQWITDVRFSPSLSRLATSSADR 616 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs-----------~Dg-~I~IWd~~t--~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg 616 (834)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+.........++|.+++ +++ ++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 3467899999998777643 223 677775432 33 223444344456889999888 444 44444
Q ss_pred eEEEEecCCC-----Cc--eeeeecc----CCCCeEEEEEccCCCcEEEEEeC------------------CCcEEEEEC
Q 003279 617 TVRVWDTENP-----DY--SLRTFTG----HSTTVMSLDFHPSKEDLLCSCDN------------------NSEIRYWSI 667 (834)
Q Consensus 617 ~I~IWDl~s~-----~~--~i~~~~~----h~~~V~sl~fspdg~~llasgs~------------------Dg~I~lwDl 667 (834)
.+++.|.+.. +. .+..+.. +......++|.|||..++..++. .|.|..+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334455321 11 1112222 13447789999998755544421 144666666
Q ss_pred CCCceeeEeecCCCeeEEEEecCCCEEEEEE
Q 003279 668 NNGSCAGVFKCQSGATQMRFQPRLGRILAAA 698 (834)
Q Consensus 668 ~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s 698 (834)
..++.............++|++++..+++-.
T Consensus 172 dg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 6554332222233467899999887765543
No 418
>PHA03098 kelch-like protein; Provisional
Probab=95.96 E-value=0.26 Score=58.41 Aligned_cols=157 Identities=10% Similarity=0.069 Sum_probs=76.4
Q ss_pred CcEEEEEeCC-----CcEEEEECCCCceeeEeecCCC--eeEEEEecCCCEEEEEEcC------CeEEEEECCCCeEEEE
Q 003279 650 EDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLK 716 (834)
Q Consensus 650 ~~llasgs~D-----g~I~lwDl~s~~~i~~~~~~~~--i~~l~~sp~g~~ll~~s~d------g~I~iwDl~t~~~~~~ 716 (834)
+.+++.|+.+ ..+..||..+++....-....+ -.+++ .-++..++.|+.+ +.+..||..+.+-...
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 4566677654 3577888877654332221111 12222 2345566666632 4688999887543221
Q ss_pred --EeCCCCCEEEEEEcCCCCEEEEEe-CC--------eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003279 717 --LQGHKNQVHSVCWNTSGEYLASVS-DE--------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 785 (834)
Q Consensus 717 --l~~h~~~I~sl~~spdg~~Lasgs-Dg--------~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~ 785 (834)
+..... -.+++. .++.+++.|+ ++ .+.+||..+..- ..+............+.+ ++..+++|+.
T Consensus 422 ~~~p~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~r~~~~~~~~--~~~iyv~GG~ 496 (534)
T PHA03098 422 SPLPISHY-GGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW-TELSSLNFPRINASLCIF--NNKIYVVGGD 496 (534)
T ss_pred CCCCcccc-CceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCce-eeCCCCCcccccceEEEE--CCEEEEEcCC
Confidence 111111 112222 3455555554 21 388888877521 111111111111122222 5555556654
Q ss_pred C-----CeEEEEECCCCeEEEeccCCCCeEEE
Q 003279 786 Y-----ETLELWNMTENKTLTLSAHDKLVSSL 812 (834)
Q Consensus 786 d-----g~I~Iwdl~~~~~~~l~~h~~~V~~l 812 (834)
+ +.|.+||..+.+...+......+..+
T Consensus 497 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~ 528 (534)
T PHA03098 497 KYEYYINEIEVYDDKTNTWTLFCKFPKVIGSL 528 (534)
T ss_pred cCCcccceeEEEeCCCCEEEecCCCcccccce
Confidence 3 47899999888776554443334333
No 419
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.88 E-value=0.35 Score=55.61 Aligned_cols=171 Identities=12% Similarity=0.185 Sum_probs=104.7
Q ss_pred CCeEEEEEccCCCcEEEEEe--CCCcEEEEECCCCceeeEeecCCCeeEEEEecC----CCEEEEEEcCCeEEEEECCC-
Q 003279 638 TTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR----LGRILAAAIENYISILDVET- 710 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasgs--~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~----g~~ll~~s~dg~I~iwDl~t- 710 (834)
.+|..++|. ||+.++.+.- .+|.+++=| .+.+..| ..|..+.|.|- ...+++.-....|.||-+.-
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF---EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF---EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc---ceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 467888886 5565555542 233333322 2233333 56888999884 44688888899999998752
Q ss_pred ----CeEEEEEeC-C--CCCE--EEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 003279 711 ----QVCRLKLQG-H--KNQV--HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 780 (834)
Q Consensus 711 ----~~~~~~l~~-h--~~~I--~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L 780 (834)
.+.+..-.. . .-+| ..+.|+|...+|++-. .+.-.+++++.... .....+ ...+.|.|.+|..||..|
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s-rVkaDi-~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS-RVKADI-KTSGLIHCACWTKDGQRL 170 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc-eEEEec-cCCceEEEEEecCcCCEE
Confidence 222221111 1 1122 3678999999998877 44445667765432 222333 457889999999999988
Q ss_pred EEEEcCC-eEEEEECCCCeEE-----EeccCCCCeEEEEEeCC
Q 003279 781 LVIGCYE-TLELWNMTENKTL-----TLSAHDKLVSSLAASTV 817 (834)
Q Consensus 781 ~sgs~dg-~I~Iwdl~~~~~~-----~l~~h~~~V~~lafspd 817 (834)
+++-... .-+|||-..+... .+..-.+.|.++.-.-|
T Consensus 171 VVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d 213 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVD 213 (671)
T ss_pred EEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEecc
Confidence 8776554 7889986544322 34445566766654443
No 420
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=0.13 Score=62.54 Aligned_cols=101 Identities=20% Similarity=0.237 Sum_probs=70.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC-eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeE
Q 003279 563 DGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM 641 (834)
Q Consensus 563 dg~~Lasgs~Dg~I~IWd~~t~-~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~ 641 (834)
-+.+++.|+..|.|...|.... .....=..-.++|++++|+.+|+.++.|-.+|.|.+||+..++. ++.+..|..+++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~-l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI-LKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc-eeeeeecCCccc
Confidence 3557888998899988886642 22222234567899999999999999999999999999998654 666666665555
Q ss_pred EEE---EccCCCcEEEEEeCCCcEEEEEC
Q 003279 642 SLD---FHPSKEDLLCSCDNNSEIRYWSI 667 (834)
Q Consensus 642 sl~---fspdg~~llasgs~Dg~I~lwDl 667 (834)
.+- +..++. .+.+++..|. +|.+
T Consensus 177 ~vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 543 333333 5557766665 4543
No 421
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.75 E-value=1.2 Score=54.75 Aligned_cols=67 Identities=10% Similarity=0.064 Sum_probs=47.0
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeecCCCee-------------EEEEec--CCCEEEEEEc----------CCeEEEE
Q 003279 652 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-------------QMRFQP--RLGRILAAAI----------ENYISIL 706 (834)
Q Consensus 652 llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~-------------~l~~sp--~g~~ll~~s~----------dg~I~iw 706 (834)
.++.++.|+.|.-.|.++|+.+..+..++.+. .+.-.| .++.+++++. +|.|+-|
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 45567789999999999999998775433321 011111 2456677653 5889999
Q ss_pred ECCCCeEEEEEe
Q 003279 707 DVETQVCRLKLQ 718 (834)
Q Consensus 707 Dl~t~~~~~~l~ 718 (834)
|+++|+.+..+.
T Consensus 342 Da~TGkl~W~~~ 353 (764)
T TIGR03074 342 DVNTGALVWAWD 353 (764)
T ss_pred ECCCCcEeeEEe
Confidence 999999998876
No 422
>PRK13684 Ycf48-like protein; Provisional
Probab=95.71 E-value=1.2 Score=49.32 Aligned_cols=150 Identities=11% Similarity=0.106 Sum_probs=87.4
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEE-EecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce
Q 003279 594 TQWITDVRFSPSLSRLATSSADRTVRV-WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 672 (834)
Q Consensus 594 ~~~I~~l~fspdg~~Latgs~Dg~I~I-WDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~ 672 (834)
...+.++.+.+++.+++++ ..|.+.. +|-..... ......-...++++.+.+++. +++++ ..|.+++=..+.+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW-~~~~~~~~~~l~~i~~~~~g~-~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAW-TPHQRNSSRRLQSMGFQPDGN-LWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeE-EEeeCCCcccceeeeEcCCCC-EEEEe-cCCEEEEccCCCCCc
Confidence 4578999999988776665 4554443 22221112 112223456789999999876 44344 467665333444432
Q ss_pred eeEeec-----CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE---eCCCCCEEEEEEcCCCCEEEEEeCCeE
Q 003279 673 AGVFKC-----QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL---QGHKNQVHSVCWNTSGEYLASVSDELV 744 (834)
Q Consensus 673 i~~~~~-----~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l---~~h~~~I~sl~~spdg~~LasgsDg~I 744 (834)
-..... ...+..+.+.+++. +++++.+|.|.. ....++.-... ..-....+.+.|..+++.+++|..|.|
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i 325 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL 325 (334)
T ss_pred cccccCCccccccceeeEEEcCCCC-EEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence 222111 23467788888755 555666675553 33433332222 222346788888888888888889988
Q ss_pred EEEEc
Q 003279 745 RVWSI 749 (834)
Q Consensus 745 ~IwDl 749 (834)
..|+-
T Consensus 326 l~~~~ 330 (334)
T PRK13684 326 LRYVG 330 (334)
T ss_pred EEecC
Confidence 87763
No 423
>PLN02153 epithiospecifier protein
Probab=95.68 E-value=1.1 Score=49.65 Aligned_cols=175 Identities=7% Similarity=-0.035 Sum_probs=80.7
Q ss_pred CcEEEEEeCC-----CcEEEEECCCCceeeEeec-----C-CCeeEEEEecCCCEEEEEEcC-----------CeEEEEE
Q 003279 650 EDLLCSCDNN-----SEIRYWSINNGSCAGVFKC-----Q-SGATQMRFQPRLGRILAAAIE-----------NYISILD 707 (834)
Q Consensus 650 ~~llasgs~D-----g~I~lwDl~s~~~i~~~~~-----~-~~i~~l~~sp~g~~ll~~s~d-----------g~I~iwD 707 (834)
..+++.|+.+ ..+.+||+.+.+-...-.. . ......+...++..++.|+.+ ..|.+||
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd 165 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYN 165 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEE
Confidence 4566666643 3578899887654432111 1 111222223345566666643 2477889
Q ss_pred CCCCeEEEEEeCC----C-CCEEEEEEcCCCCEEEEEe-C-------------CeEEEEEcCCCCCceeEEEee-cCCCc
Q 003279 708 VETQVCRLKLQGH----K-NQVHSVCWNTSGEYLASVS-D-------------ELVRVWSIGSGSKGECIHELS-CTGNK 767 (834)
Q Consensus 708 l~t~~~~~~l~~h----~-~~I~sl~~spdg~~Lasgs-D-------------g~I~IwDl~s~~~~~~i~~~~-~~~~~ 767 (834)
.++.+-.. +... . ..-.+++. -++++++.++ + ..|.+||+.+..- ..+.... .....
T Consensus 166 ~~~~~W~~-l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W-~~~~~~g~~P~~r 242 (341)
T PLN02153 166 IADGKWVQ-LPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKW-TEVETTGAKPSAR 242 (341)
T ss_pred CCCCeEee-CCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcE-EeccccCCCCCCc
Confidence 88753221 1111 0 11112222 2455555433 2 3588888876521 1111110 01111
Q ss_pred eEEEEEeCCCCEEEEEEcC--------------CeEEEEECCCCeEEEeccCCC------C--eEEEEEeCCCCEEEEEe
Q 003279 768 FHSCVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTLSAHDK------L--VSSLAASTVNGMVASAS 825 (834)
Q Consensus 768 I~svafspdg~~L~sgs~d--------------g~I~Iwdl~~~~~~~l~~h~~------~--V~~lafspdg~~LaSgs 825 (834)
....+..-++..++.|+.. +.|+.||+.+.....+..... . ..++...-++++++.|+
T Consensus 243 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG 322 (341)
T PLN02153 243 SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGG 322 (341)
T ss_pred ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcC
Confidence 1111222345556666641 268889988776554321111 1 12333344456777777
Q ss_pred cC
Q 003279 826 HD 827 (834)
Q Consensus 826 ~D 827 (834)
.+
T Consensus 323 ~~ 324 (341)
T PLN02153 323 KL 324 (341)
T ss_pred cC
Confidence 64
No 424
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.66 E-value=2 Score=48.76 Aligned_cols=72 Identities=13% Similarity=0.225 Sum_probs=49.1
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEE-EEE-cC--C--------------CCEEEEEe--
Q 003279 681 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS-VCW-NT--S--------------GEYLASVS-- 740 (834)
Q Consensus 681 ~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~s-l~~-sp--d--------------g~~Lasgs-- 740 (834)
.+.+++.+|.+.+.++...-|.|.++|+.++..++.+++..+.-.. +.. .. . ..+|+.-.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 3778999999887777666699999999999888877765432111 100 01 0 12444433
Q ss_pred CCeEEEEEcCCC
Q 003279 741 DELVRVWSIGSG 752 (834)
Q Consensus 741 Dg~I~IwDl~s~ 752 (834)
-|.|.||+++.+
T Consensus 389 Rg~lEvW~~~~g 400 (415)
T PF14655_consen 389 RGILEVWSMRQG 400 (415)
T ss_pred CCeEEEEecCCC
Confidence 789999999887
No 425
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.61 E-value=2.6 Score=47.27 Aligned_cols=120 Identities=17% Similarity=0.198 Sum_probs=85.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE----EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC
Q 003279 551 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 626 (834)
Q Consensus 551 H~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~----~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~ 626 (834)
..++|.++.||+|.+.||+--.|++|.+++....+.. .+.+..+..|...+|+.+ .-+|..+..| |-+|-+...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 4568999999999999999999999999987432222 223445566999999866 4566655444 777877766
Q ss_pred CceeeeeccCCCCeEEEEEccCCCcEEEEEe-CCCcEEEEECCCCce
Q 003279 627 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSC 672 (834)
Q Consensus 627 ~~~i~~~~~h~~~V~sl~fspdg~~llasgs-~Dg~I~lwDl~s~~~ 672 (834)
...++....|...|....|+++..-++.+.+ ..+++.=+-++++..
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v 189 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTM 189 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeecee
Confidence 6667888889999999999998765554444 344444455554443
No 426
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.55 E-value=0.092 Score=63.74 Aligned_cols=71 Identities=27% Similarity=0.389 Sum_probs=57.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEE---ECCCCCEEEEEeCCCeEEEEec
Q 003279 551 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR---FSPSLSRLATSSADRTVRVWDT 623 (834)
Q Consensus 551 H~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~---fspdg~~Latgs~Dg~I~IWDl 623 (834)
-.++|++++|+.||++++.|-.+|.|.+||+..++..+.+..|..+++.+- +..++..++++...|. +|.+
T Consensus 129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 357899999999999999999999999999999999998887777655544 4445667888887776 5554
No 427
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.54 E-value=0.4 Score=53.97 Aligned_cols=146 Identities=11% Similarity=0.017 Sum_probs=83.1
Q ss_pred CCeeEEEEecCCCEEEEEE-----------cCC-eEEEEECCC--Ce--EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCe
Q 003279 680 SGATQMRFQPRLGRILAAA-----------IEN-YISILDVET--QV--CRLKLQGHKNQVHSVCWNTSGEYLASVSDEL 743 (834)
Q Consensus 680 ~~i~~l~~sp~g~~ll~~s-----------~dg-~I~iwDl~t--~~--~~~~l~~h~~~I~sl~~spdg~~LasgsDg~ 743 (834)
.....++|.++|+.+++-. ..+ .|.+++-.+ ++ ....+.......+.+++.+++ +++ +....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 3456677777777555542 123 677776543 22 233343334456889999998 444 44334
Q ss_pred EEEE-EcCCCC----Cce-eEEEeecC----CCceEEEEEeCCCCEEEEEEcC-------------------CeEEEEEC
Q 003279 744 VRVW-SIGSGS----KGE-CIHELSCT----GNKFHSCVFHPTFPSLLVIGCY-------------------ETLELWNM 794 (834)
Q Consensus 744 I~Iw-Dl~s~~----~~~-~i~~~~~~----~~~I~svafspdg~~L~sgs~d-------------------g~I~Iwdl 794 (834)
|..| |..... ..+ .+..+... ......++|.|||.+.++.+.. +.|..++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 4444 543221 112 22223222 3447789999999866554421 35666676
Q ss_pred CCCeEEEeccCCCCeEEEEEeCCCCEEEEEecC
Q 003279 795 TENKTLTLSAHDKLVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 795 ~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~D 827 (834)
.+++...+...-.....++|+++|.++++-..+
T Consensus 172 dg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 172 DGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 666554443334456789999999888765433
No 428
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=95.48 E-value=6.3 Score=48.90 Aligned_cols=177 Identities=16% Similarity=0.197 Sum_probs=98.5
Q ss_pred cCCCCeEEEEEC---C----CCCEEEEEeCCCeEEEEecC------CCC--------ceeeeecc---CCCCeEEEEEcc
Q 003279 592 EHTQWITDVRFS---P----SLSRLATSSADRTVRVWDTE------NPD--------YSLRTFTG---HSTTVMSLDFHP 647 (834)
Q Consensus 592 ~h~~~I~~l~fs---p----dg~~Latgs~Dg~I~IWDl~------s~~--------~~i~~~~~---h~~~V~sl~fsp 647 (834)
....+|..|+|. . ..++|++- ....+.|+... ... .++..+.. ...+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456788888887 2 12355544 44556666621 100 01122221 234567788888
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEE
Q 003279 648 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSV 727 (834)
Q Consensus 648 dg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl 727 (834)
....-||+.+..|...|||+....... .... -+.....|.| ++|... .+....|
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~-----~~~~----------~~~~~~~gsi-~~d~~e----------~s~w~rI 209 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRK-----SSNL----------RLSRNISGSI-IFDPEE----------LSNWKRI 209 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccC-----Ccce----------eeccCCCccc-cCCCcc----------cCcceee
Confidence 777778888888888888882111100 1111 1111112333 233221 1445678
Q ss_pred EEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 728 CWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 728 ~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
.|.++...|++++...+.++|+++......+ ........|..+.-++.....+..-....|...++..
T Consensus 210 ~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l-~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 210 LWVSDSNRLLVCNRSKLMLIDFESNWQTEYL-VTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred EecCCCCEEEEEcCCceEEEECCCCCccchh-ccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 9998888899999888999999987442221 2223456688888777732222222334677777766
No 429
>PHA03098 kelch-like protein; Provisional
Probab=95.39 E-value=0.47 Score=56.23 Aligned_cols=184 Identities=9% Similarity=0.005 Sum_probs=89.6
Q ss_pred CCCCEEEEEeCCC------cEEEEeCCCCeEEEE--eccCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEecCCCCc
Q 003279 562 PDGKLLATGGHDK------KAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDY 628 (834)
Q Consensus 562 pdg~~Lasgs~Dg------~I~IWd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~D-----g~I~IWDl~s~~~ 628 (834)
.++.+++.||.++ .+..||..+.+-... +.........+.+ ++.+++.|+.+ ..+.+||..+..+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 3456667776542 577888877554321 1111111222222 56777888765 3577888887654
Q ss_pred eeeeeccCCCCeEEEEEccCCCcEEEEEeCC------CcEEEEECCCCceeeEeecCCC--eeEEEEecCCCEEEEEEcC
Q 003279 629 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 629 ~i~~~~~h~~~V~sl~fspdg~~llasgs~D------g~I~lwDl~s~~~i~~~~~~~~--i~~l~~sp~g~~ll~~s~d 700 (834)
....-..+...-.+++.. ++.+++.|+.+ ..+..||+.+++....-....+ ..++ ...++..+++|+.+
T Consensus 371 ~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~ 447 (534)
T PHA03098 371 REEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIGGIS 447 (534)
T ss_pred eeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEECCcc
Confidence 221111111111122222 24566666632 3588899887654432221111 1222 22344555666542
Q ss_pred --------CeEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCC
Q 003279 701 --------NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSG 752 (834)
Q Consensus 701 --------g~I~iwDl~t~~~~~~--l~~h~~~I~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~ 752 (834)
..+.+||..+.+-... +.........+.+ ++++++.|+ + +.|.+||..+.
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 2388899887643221 1111111112222 566666665 2 26777877664
No 430
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=95.38 E-value=3.9 Score=44.34 Aligned_cols=165 Identities=9% Similarity=0.090 Sum_probs=96.1
Q ss_pred cEEEEECCCCceeeEeecCC-------CeeEEEEecCC-----CEEEEEEc-CCeEEEEECCCCeEEEEEeCC-------
Q 003279 661 EIRYWSINNGSCAGVFKCQS-------GATQMRFQPRL-----GRILAAAI-ENYISILDVETQVCRLKLQGH------- 720 (834)
Q Consensus 661 ~I~lwDl~s~~~i~~~~~~~-------~i~~l~~sp~g-----~~ll~~s~-dg~I~iwDl~t~~~~~~l~~h------- 720 (834)
.|.+||+.+++.++.+..+. .+..+.+.... .+++.+.. .+.|.|||+.+++..+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 67889999999888877533 35677777632 34444444 368999999998776555432
Q ss_pred ------------CCCEEEEEEcC---CCCEEEEEeCCeEEEEEcCC-----CCCc------eeEEEeecCCCceEEEEEe
Q 003279 721 ------------KNQVHSVCWNT---SGEYLASVSDELVRVWSIGS-----GSKG------ECIHELSCTGNKFHSCVFH 774 (834)
Q Consensus 721 ------------~~~I~sl~~sp---dg~~LasgsDg~I~IwDl~s-----~~~~------~~i~~~~~~~~~I~svafs 774 (834)
...+..++.+| +++.|+...=...++|.+.+ .... ..+..+-........++++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 12356666655 66777776622233444332 1110 1122222222456678899
Q ss_pred CCCCEEEEEEcCCeEEEEECCC-----Ce-EEEeccC-CCCeEEEEEeC--CCCEEEEEe
Q 003279 775 PTFPSLLVIGCYETLELWNMTE-----NK-TLTLSAH-DKLVSSLAAST--VNGMVASAS 825 (834)
Q Consensus 775 pdg~~L~sgs~dg~I~Iwdl~~-----~~-~~~l~~h-~~~V~~lafsp--dg~~LaSgs 825 (834)
++|..+++--..+.|..|+..+ .- .+..... -..+.++.+.+ +|.+.+.+.
T Consensus 195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 9998777777888999999887 21 2222222 35788999999 777666553
No 431
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.33 E-value=2.9 Score=44.17 Aligned_cols=208 Identities=12% Similarity=0.070 Sum_probs=128.0
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEe
Q 003279 597 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 676 (834)
Q Consensus 597 I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~ 676 (834)
-..++-.+||..-+++...+.|--.|..+++. ...-.+....-..|..-||+...+ +....-|.-+|-++.+..+ |
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev-~~ypLg~Ga~Phgiv~gpdg~~Wi--td~~~aI~R~dpkt~evt~-f 139 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEV-ETYPLGSGASPHGIVVGPDGSAWI--TDTGLAIGRLDPKTLEVTR-F 139 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCce-EEEecCCCCCCceEEECCCCCeeE--ecCcceeEEecCcccceEE-e
Confidence 45677788998899998888888888888764 333344555667788888887555 3222256666766554332 2
Q ss_pred ec-----CCCeeEEEEecCCCEEEEEEcC---------CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C
Q 003279 677 KC-----QSGATQMRFQPRLGRILAAAIE---------NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D 741 (834)
Q Consensus 677 ~~-----~~~i~~l~~sp~g~~ll~~s~d---------g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-D 741 (834)
.. ........|.+.|...+++... +.|++|+.. .....+.||..|||...++.- +
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwyaslag 209 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWYASLAG 209 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEEEeccc
Confidence 21 4457888999998888877632 234444433 233457889999999887766 7
Q ss_pred CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE--EeccCCCCeEEEEEeCCCC
Q 003279 742 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNG 819 (834)
Q Consensus 742 g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~--~l~~h~~~V~~lafspdg~ 819 (834)
+.|-..|..++.. +.+..-.........+--+|.+..-++....+.+..||-...... .+.+....-.++.....++
T Consensus 210 naiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~gr 288 (353)
T COG4257 210 NAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGR 288 (353)
T ss_pred cceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCc
Confidence 7777777766522 222221221233445556677776667666778888877655443 3333333444444443333
No 432
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.20 E-value=0.04 Score=56.20 Aligned_cols=138 Identities=11% Similarity=0.019 Sum_probs=75.5
Q ss_pred EEeCCCcEEEEeCCCCeEEEE-eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEcc
Q 003279 569 TGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 647 (834)
Q Consensus 569 sgs~Dg~I~IWd~~t~~~~~~-l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fsp 647 (834)
..+.|+.|.-+++...+.... -..|...-..+. -+..+++|+.+|.|++|+..-.......+..-...|.++.-.-
T Consensus 35 ~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~---~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~ 111 (238)
T KOG2444|consen 35 ATSADGLVRERKVRKHKESCRSERFIDEGQRVVT---ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNG 111 (238)
T ss_pred cccCCcccccchhhhhhhhhhhhhhhhcceeecc---cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccc
Confidence 344567777666554322211 111222211122 3467999999999999998743322222222333444443333
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCceeeEeecCC--CeeEEEEecCCCEEEEE--EcCCeEEEEECC
Q 003279 648 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLGRILAA--AIENYISILDVE 709 (834)
Q Consensus 648 dg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~--~i~~l~~sp~g~~ll~~--s~dg~I~iwDl~ 709 (834)
+...+.+++..||.|+.|++.-++.+.....+. .+........++.+..+ +.+..++.|++.
T Consensus 112 ~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 112 RDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 333488899999999999999887776655433 23333333333444444 445555555554
No 433
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.17 E-value=0.16 Score=61.98 Aligned_cols=144 Identities=13% Similarity=0.071 Sum_probs=96.2
Q ss_pred CeEEEEECCCCCEEEEE--eCCCeEEEEecCCCCcee----eee------ccCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 003279 596 WITDVRFSPSLSRLATS--SADRTVRVWDTENPDYSL----RTF------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 663 (834)
Q Consensus 596 ~I~~l~fspdg~~Latg--s~Dg~I~IWDl~s~~~~i----~~~------~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 663 (834)
+|..+...+|++..++. +.+-.|..||+++-.... ..+ ......+.++.|.|.-....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45556666676654443 344589999987532111 111 112345667889987666677888899999
Q ss_pred EEECCCC-ceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC----CCCCEEEEEEcCCCCEEEE
Q 003279 664 YWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLAS 738 (834)
Q Consensus 664 lwDl~s~-~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~----h~~~I~sl~~spdg~~Las 738 (834)
+..+..- ..+..+......++++|+|.|+.+++|-..|++.-|...-. ....+.+ ....|.||+|-..-.++++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 8877543 23334555677999999999999999999999998865432 2222221 2468999999888777776
Q ss_pred Ee
Q 003279 739 VS 740 (834)
Q Consensus 739 gs 740 (834)
-+
T Consensus 261 y~ 262 (1405)
T KOG3630|consen 261 YG 262 (1405)
T ss_pred ec
Confidence 54
No 434
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.07 E-value=1.3 Score=53.94 Aligned_cols=27 Identities=33% Similarity=0.405 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVL 578 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~I 578 (834)
.-.|..|.++++|++||..|..|.+.+
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEE
Confidence 346889999999999999988664444
No 435
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=94.85 E-value=11 Score=44.38 Aligned_cols=246 Identities=11% Similarity=0.087 Sum_probs=121.2
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCe---EEEEeccC-CCCeEEEEECCCC-CEEEEEeCCCeEEEEecCCCCceeeeecc
Q 003279 561 SPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEH-TQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTG 635 (834)
Q Consensus 561 Spdg~~Lasgs~Dg~I~IWd~~t~~---~~~~l~~h-~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~s~~~~i~~~~~ 635 (834)
..++..++.+..+|.++...+.... .+..+ +. ....+++++..++ .+|+.||.-|.=.++.+......+.....
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~ 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYL-GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEE-EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEc-CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc
Confidence 4567789999999999888766433 12222 22 4566777777654 47888877555444444433332222223
Q ss_pred CCCCeEEEEEccC---CC-------cEEEEEe--CCCcEEEEECCCC---ceeeEeecCCCeeEEEEecC----CCEEEE
Q 003279 636 HSTTVMSLDFHPS---KE-------DLLCSCD--NNSEIRYWSINNG---SCAGVFKCQSGATQMRFQPR----LGRILA 696 (834)
Q Consensus 636 h~~~V~sl~fspd---g~-------~llasgs--~Dg~I~lwDl~s~---~~i~~~~~~~~i~~l~~sp~----g~~ll~ 696 (834)
.-++|.++++.+. +. .++++++ .+|.+++..-.-+ .........+ +..+-..+. +.+++.
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~ 376 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPG-VTGIWTLKLSSSDHSYLVL 376 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCC-ceEEEEeeecCCCceEEEE
Confidence 4578888888532 12 4555544 4677877643211 1112222222 433322222 345555
Q ss_pred EEcCCeEEEEECC---CCeEEEEEe--C---CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeec-CCCc
Q 003279 697 AAIENYISILDVE---TQVCRLKLQ--G---HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC-TGNK 767 (834)
Q Consensus 697 ~s~dg~I~iwDl~---t~~~~~~l~--~---h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~-~~~~ 767 (834)
+..+ .-.++.+. ..+.+..+. + ....+.+-.+. +..++=.....|++.+.... ........ ....
T Consensus 377 S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~---~~~~~w~~~~~~~ 450 (504)
T PF10433_consen 377 SFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDG---KLTQEWKPPAGSI 450 (504)
T ss_dssp EESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSST---SEEEEEE-TTS--
T ss_pred EcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCC---eEEEEEeCCCCCe
Confidence 5544 44444442 333332221 1 11223333332 55566566667899987665 34444322 3444
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-Eec-----cCCCCeEEEEEeC
Q 003279 768 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-----AHDKLVSSLAAST 816 (834)
Q Consensus 768 I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~-----~h~~~V~~lafsp 816 (834)
|.+++.. +..++++..++.+.++.+...... ... .....|.|+...|
T Consensus 451 I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 451 IVAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp -SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 5444444 356888888888999988877665 111 2578899988776
No 436
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.82 E-value=8.7 Score=43.13 Aligned_cols=187 Identities=5% Similarity=-0.044 Sum_probs=100.8
Q ss_pred CEEEEEeCCCeEEEEecCCCCceeeeeccC-CCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCC--Cee
Q 003279 607 SRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GAT 683 (834)
Q Consensus 607 ~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h-~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~--~i~ 683 (834)
..++++..+|.|.-.|..++.......... ...+.+-.+..+|+ ++.++.++.++.+|.++|+.+..+.... .+.
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~--i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK--IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe--EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 345555788888888888766422111111 12233333333554 5567778899999999999999888766 111
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC---CCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeE
Q 003279 684 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK---NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECI 758 (834)
Q Consensus 684 ~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~---~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i 758 (834)
...+. ....++..+.++.+...|..+++.+....... ..+..-....++..++... ++.+.-+|..++. .+
T Consensus 147 ~~~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~---~~ 222 (370)
T COG1520 147 SPPVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGT---LK 222 (370)
T ss_pred cCcEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCc---Ee
Confidence 22222 23445555578999999999998877654322 1111111122333333333 3456666666653 22
Q ss_pred EEe----ecCCC------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 759 HEL----SCTGN------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 759 ~~~----~~~~~------~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
... ..... .+..-...-++ .++.++.++.+...|..+++.+
T Consensus 223 w~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~~~~l~~~~G~~~ 273 (370)
T COG1520 223 WSQKVSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGKLLCLDADTGELI 273 (370)
T ss_pred eeeeeecccCcccccccccccCceEEECC-cEEEEecCCeEEEEEcCCCceE
Confidence 221 10000 01111111122 2466677777888888888877
No 437
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.81 E-value=3.4 Score=50.46 Aligned_cols=94 Identities=14% Similarity=0.171 Sum_probs=55.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceee
Q 003279 595 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 674 (834)
Q Consensus 595 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~ 674 (834)
-.|..|.++++|++|+..|..| |.|..+...-.....+.+....|.|=.+.-+ ..++ ..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~-~~~~-~~------------------ 143 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVD-ERFF-TS------------------ 143 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEec-hhhc-cC------------------
Confidence 3588899999999999988866 4444443211001122222233333333221 2222 11
Q ss_pred EeecCCCeeEEEEecC---CCEEEEEEcCCeEEEEECCCC
Q 003279 675 VFKCQSGATQMRFQPR---LGRILAAAIENYISILDVETQ 711 (834)
Q Consensus 675 ~~~~~~~i~~l~~sp~---g~~ll~~s~dg~I~iwDl~t~ 711 (834)
.....|..+.|+|. +.+|++-+.|+.|++||+...
T Consensus 144 --~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 --NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred --CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 11245778888886 578999999999999998754
No 438
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.79 E-value=15 Score=45.57 Aligned_cols=163 Identities=11% Similarity=0.103 Sum_probs=85.4
Q ss_pred EEEEECCCCceeeEeecCC-----CeeEEEEecCCCE-E-EEEEc-----------CCeEEEEECCC-CeEEEEEe--CC
Q 003279 662 IRYWSINNGSCAGVFKCQS-----GATQMRFQPRLGR-I-LAAAI-----------ENYISILDVET-QVCRLKLQ--GH 720 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~~~~-----~i~~l~~sp~g~~-l-l~~s~-----------dg~I~iwDl~t-~~~~~~l~--~h 720 (834)
|+++|..+++.+..+.... .+..+.|+..... + +++.. +|.++.|++-. ++.+.-+. .-
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~ 934 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI 934 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence 5566666665555554422 2444555543332 3 33332 34466776533 33222221 12
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEE--EEECCC
Q 003279 721 KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLE--LWNMTE 796 (834)
Q Consensus 721 ~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~--~~~~~~I~svafspdg~~L~sgs~dg~I~--Iwdl~~ 796 (834)
.+.|. ++.|...++.+|-...+++||+.... .++.. ..-...|..+.+ .+..|++|.....|. .|+-.+
T Consensus 935 ~~~v~--Ai~~f~~~~LagvG~~l~~YdlG~K~---lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~ 1007 (1205)
T KOG1898|consen 935 PGPVG--AICPFQGRVLAGVGRFLRLYDLGKKK---LLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRRED 1007 (1205)
T ss_pred Cccce--EEeccCCEEEEecccEEEEeeCChHH---HHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCC
Confidence 23443 44566668888778899999998752 22221 112334555544 345788887766554 455555
Q ss_pred CeEEEecc--CCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 797 NKTLTLSA--HDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 797 ~~~~~l~~--h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
+..+.+.. ....|+++.+- |...+|.+..=|.+.+
T Consensus 1008 n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~ 1044 (1205)
T KOG1898|consen 1008 NQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAV 1044 (1205)
T ss_pred CeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEE
Confidence 65554432 34456666654 3445666665565544
No 439
>PRK10350 hypothetical protein; Provisional
Probab=94.64 E-value=0.13 Score=47.03 Aligned_cols=28 Identities=32% Similarity=0.296 Sum_probs=14.4
Q ss_pred ccccchhhhhh-hHHHHHHHHHHHHHHHH
Q 003279 68 NEKHSESAASY-IESQVIKAREQQQQQQQ 95 (834)
Q Consensus 68 ~~~~s~~~~~y-~~~~q~~~~~qqqqqqq 95 (834)
+..++.....| +.+++..+.+.|.+|++
T Consensus 21 N~~NNPnqpGY~ipSQQRmQtqMQ~QQ~q 49 (145)
T PRK10350 21 NTLNNPNQPGYQIPSQQRMQTQMQTQQIQ 49 (145)
T ss_pred hccCCCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 44455556668 66655544444444333
No 440
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=94.52 E-value=17 Score=45.23 Aligned_cols=158 Identities=18% Similarity=0.193 Sum_probs=96.8
Q ss_pred CCCCCeEEEEEc---C----CCCEEEEEeCCCcEEEEeCC------C---------CeEEEEec---cCCCCeEEEEECC
Q 003279 550 ASTSKVESCHFS---P----DGKLLATGGHDKKAVLWCTE------S---------FTVKSTLE---EHTQWITDVRFSP 604 (834)
Q Consensus 550 gH~~~V~sl~fS---p----dg~~Lasgs~Dg~I~IWd~~------t---------~~~~~~l~---~h~~~I~~l~fsp 604 (834)
.-..+|..|+|. . ..++|++=. ...+.|+... . ..++..+. ....+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 345678889888 2 224555544 4566676611 1 12333333 1234678999998
Q ss_pred -CCCEEEEEeCCCeEEEEecCCCC----ceeeeeccCC----------CCeEEEEEccCCCcEEEEEeCCCcEEEEECCC
Q 003279 605 -SLSRLATSSADRTVRVWDTENPD----YSLRTFTGHS----------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 669 (834)
Q Consensus 605 -dg~~Latgs~Dg~I~IWDl~s~~----~~i~~~~~h~----------~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s 669 (834)
+...||+....|...|||+.... ..+.....+. +.-..|.|.++...+| .++ ...+.++|+++
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lL-v~~-r~~l~~~d~~~ 233 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLL-VCN-RSKLMLIDFES 233 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEE-EEc-CCceEEEECCC
Confidence 46689999999999999992111 1111111112 2234788887766666 444 56799999998
Q ss_pred Cceee---EeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003279 670 GSCAG---VFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 710 (834)
Q Consensus 670 ~~~i~---~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t 710 (834)
..... .......|..+.-++.....+..-....|..+|+..
T Consensus 234 ~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 234 NWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred CCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 76633 222345688888888744334444557888888877
No 441
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.50 E-value=11 Score=42.86 Aligned_cols=110 Identities=12% Similarity=0.007 Sum_probs=65.7
Q ss_pred CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe-----EEEEEeC--CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003279 679 QSGATQMRFQPRLGRILAAAIENYISILDVETQV-----CRLKLQG--HKNQVHSVCWNTSGEYLASVSDELVRVWSIGS 751 (834)
Q Consensus 679 ~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~-----~~~~l~~--h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s 751 (834)
...+..+.+.+++..++++ ..|.+..- ...+. ....... ....+.++.|.+++..+++|..|.+.+.. ..
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~~S-~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~ 356 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLYVS-KGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DG 356 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEEEe-cCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CC
Confidence 4568888898887766555 55554443 33332 1222221 12358899999999988888888666553 44
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003279 752 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 792 (834)
Q Consensus 752 ~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iw 792 (834)
++..........-...++.+.|.++++ .++.+.+|.|.-|
T Consensus 357 G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G~il~~ 396 (398)
T PLN00033 357 GKSWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDGVLLRY 396 (398)
T ss_pred CcceeEccccCCCCcceeEEEEcCCCc-eEEEeCCcEEEEe
Confidence 432222221222345678888877655 6667777776554
No 442
>PHA02790 Kelch-like protein; Provisional
Probab=94.48 E-value=1 Score=52.74 Aligned_cols=140 Identities=7% Similarity=-0.027 Sum_probs=68.2
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCeEEEE--eccCCCCeEEEEECCCCCEEEEEeCC--CeEEEEecCCCCceeeee
Q 003279 563 DGKLLATGGHDK-----KAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSLRTF 633 (834)
Q Consensus 563 dg~~Lasgs~Dg-----~I~IWd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~D--g~I~IWDl~s~~~~i~~~ 633 (834)
++.++++||.++ .+..||..+.+-... +.........+. -++.+.+.|+.+ ..+..||..++.+. ..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~--~~ 346 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWV--NM 346 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEE--EC
Confidence 345666776543 567788776543322 211111122222 367777787764 35788887765432 11
Q ss_pred ccCCCCeE--EEEEccCCCcEEEEEeCCC---cEEEEECCCCceeeEeecCCC--eeEEEEecCCCEEEEEEcCCeEEEE
Q 003279 634 TGHSTTVM--SLDFHPSKEDLLCSCDNNS---EIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIENYISIL 706 (834)
Q Consensus 634 ~~h~~~V~--sl~fspdg~~llasgs~Dg---~I~lwDl~s~~~i~~~~~~~~--i~~l~~sp~g~~ll~~s~dg~I~iw 706 (834)
..-..+.. +++.. + +.+.+.|+.++ .+..||.++..-...-....+ -.+++ .-++..+++| |.+.+|
T Consensus 347 ~~l~~~r~~~~~~~~-~-g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~G---G~~e~y 420 (480)
T PHA02790 347 PSLLKPRCNPAVASI-N-NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVG---RNAEFY 420 (480)
T ss_pred CCCCCCCcccEEEEE-C-CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEEC---CceEEe
Confidence 11111111 22221 2 45666776543 467888877654432221111 11222 2333444444 457788
Q ss_pred ECCCCe
Q 003279 707 DVETQV 712 (834)
Q Consensus 707 Dl~t~~ 712 (834)
|.++.+
T Consensus 421 dp~~~~ 426 (480)
T PHA02790 421 CESSNT 426 (480)
T ss_pred cCCCCc
Confidence 887653
No 443
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.40 E-value=1.4 Score=52.43 Aligned_cols=123 Identities=12% Similarity=0.125 Sum_probs=79.8
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-cCCCCeEEEEEC--CCCCEEEEEeCCCeEE
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFS--PSLSRLATSSADRTVR 619 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~I~~l~fs--pdg~~Latgs~Dg~I~ 619 (834)
.....+...-....-+.-|.-++..++-+....+.|||...+.....-. ...+.|.++.|. |++..+++.+....|.
T Consensus 20 ~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~ 99 (631)
T PF12234_consen 20 LLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVL 99 (631)
T ss_pred EEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEE
Confidence 3344444444556666666666655555555689999999887554332 457789999996 5888999999999999
Q ss_pred EEecC-----C--CC-ceeee--eccCC-CCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 003279 620 VWDTE-----N--PD-YSLRT--FTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 668 (834)
Q Consensus 620 IWDl~-----s--~~-~~i~~--~~~h~-~~V~sl~fspdg~~llasgs~Dg~I~lwDl~ 668 (834)
+|--. . +. ..++. +..|+ .+|.+..|.++|. ++ +|+ ++.+.|+|-.
T Consensus 100 l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-Lv-V~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 100 LYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LV-VGS-GNQLFVFDKW 156 (631)
T ss_pred EEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EE-EEe-CCEEEEECCC
Confidence 98532 1 11 11221 23343 5789999999875 33 333 4578887643
No 444
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=94.31 E-value=16 Score=46.01 Aligned_cols=169 Identities=14% Similarity=0.103 Sum_probs=95.0
Q ss_pred CcEEEEECCCCceeeEeec--CCCeeEEEEec---------CCCEEEEEEc---------CCeEEEEECCC-----Ce--
Q 003279 660 SEIRYWSINNGSCAGVFKC--QSGATQMRFQP---------RLGRILAAAI---------ENYISILDVET-----QV-- 712 (834)
Q Consensus 660 g~I~lwDl~s~~~i~~~~~--~~~i~~l~~sp---------~g~~ll~~s~---------dg~I~iwDl~t-----~~-- 712 (834)
..|.+.+..+++.+..+.. ...+.+++... ...++++|.. -|.++|||+-. ++
T Consensus 1004 f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~ 1083 (1366)
T KOG1896|consen 1004 FSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPF 1083 (1366)
T ss_pred ceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCc
Confidence 3556666666665554443 33344444322 1346776654 47899998632 21
Q ss_pred ---EEEEE--eCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003279 713 ---CRLKL--QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 787 (834)
Q Consensus 713 ---~~~~l--~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg 787 (834)
.++.+ +.-++.|..+|=- +| +|+++..-+|.||++........+..+ .-.+......--.++|+.+.-..
T Consensus 1084 t~~KlKel~~eE~KGtVsavceV-~G-~l~~~~GqKI~v~~l~r~~~ligVaFi---D~~~yv~s~~~vknlIl~gDV~k 1158 (1366)
T KOG1896|consen 1084 TKNKLKELYIEEQKGTVSAVCEV-RG-HLLSSQGQKIIVRKLDRDSELIGVAFI---DLPLYVHSMKVVKNLILAGDVMK 1158 (1366)
T ss_pred ccceeeeeehhhcccceEEEEEe-cc-EEEEccCcEEEEEEeccCCcceeeEEe---ccceeEEehhhhhhheehhhhhh
Confidence 11111 2345677666532 34 466666778999999544322222222 22333333333456677777777
Q ss_pred eEEEEECCCC-eEEEec---cCCCCeEEEEEeCCCC--EEEEEecCCcEEEe
Q 003279 788 TLELWNMTEN-KTLTLS---AHDKLVSSLAASTVNG--MVASASHDKCVKIW 833 (834)
Q Consensus 788 ~I~Iwdl~~~-~~~~l~---~h~~~V~~lafspdg~--~LaSgs~DG~I~IW 833 (834)
.|.+.-.... ..+.+. ...-.+.++.|--||. +++++..|+.|++|
T Consensus 1159 sisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1159 SISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVY 1210 (1366)
T ss_pred ceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEE
Confidence 7776655443 222222 2334678888888876 67788899999886
No 445
>PLN02153 epithiospecifier protein
Probab=94.28 E-value=4.9 Score=44.56 Aligned_cols=145 Identities=12% Similarity=0.103 Sum_probs=69.2
Q ss_pred CCCEEEEEeCC-------CcEEEEeCCCCeEEEEec--c-CCC---CeEEEEECCCCCEEEEEeCC-----CeEEEEecC
Q 003279 563 DGKLLATGGHD-------KKAVLWCTESFTVKSTLE--E-HTQ---WITDVRFSPSLSRLATSSAD-----RTVRVWDTE 624 (834)
Q Consensus 563 dg~~Lasgs~D-------g~I~IWd~~t~~~~~~l~--~-h~~---~I~~l~fspdg~~Latgs~D-----g~I~IWDl~ 624 (834)
++++++.|+.+ ..+.+||+.+.+-...-. . ... ....+.+ ++++++.|+.+ ..|.+||+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 35566666653 357888887754332111 0 000 1222333 45677777753 357888988
Q ss_pred CCCceee-eec----cCCCCeEEEEEccCCCcEEEEEeCC-----------CcEEEEECCCCceeeEeecC----CC-ee
Q 003279 625 NPDYSLR-TFT----GHSTTVMSLDFHPSKEDLLCSCDNN-----------SEIRYWSINNGSCAGVFKCQ----SG-AT 683 (834)
Q Consensus 625 s~~~~i~-~~~----~h~~~V~sl~fspdg~~llasgs~D-----------g~I~lwDl~s~~~i~~~~~~----~~-i~ 683 (834)
+...... ... .....-.+++.. + +.+++.|+.+ ..|.+||..+.+-...-... .. -.
T Consensus 110 t~~W~~~~~~~~~~~p~~R~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~ 187 (341)
T PLN02153 110 KNEWTFLTKLDEEGGPEARTFHSMASD-E-NHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGA 187 (341)
T ss_pred CCEEEEeccCCCCCCCCCceeeEEEEE-C-CEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcc
Confidence 7554211 110 001111122222 2 3466666643 24778898876543321111 11 11
Q ss_pred EEEEecCCCEEEEEEc-------------CCeEEEEECCCCe
Q 003279 684 QMRFQPRLGRILAAAI-------------ENYISILDVETQV 712 (834)
Q Consensus 684 ~l~~sp~g~~ll~~s~-------------dg~I~iwDl~t~~ 712 (834)
+++. -+++.+++++. .+.|.+||+.+.+
T Consensus 188 ~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~ 228 (341)
T PLN02153 188 GFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK 228 (341)
T ss_pred eEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCc
Confidence 2222 34455555442 1468889988764
No 446
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.22 E-value=0.13 Score=39.54 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=29.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 585 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~ 585 (834)
...|.+++|+|...+||.|+.||.|.||.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 356999999999999999999999999998 443
No 447
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=94.15 E-value=11 Score=45.16 Aligned_cols=197 Identities=15% Similarity=0.164 Sum_probs=98.8
Q ss_pred EECCCCCEEEEEeCCCeEEEEecCC-CCceeeeeccCCCCeEEEEEccC--CCcEEEEE-eCCCcEEEEECCCC------
Q 003279 601 RFSPSLSRLATSSADRTVRVWDTEN-PDYSLRTFTGHSTTVMSLDFHPS--KEDLLCSC-DNNSEIRYWSINNG------ 670 (834)
Q Consensus 601 ~fspdg~~Latgs~Dg~I~IWDl~s-~~~~i~~~~~h~~~V~sl~fspd--g~~llasg-s~Dg~I~lwDl~s~------ 670 (834)
.++|+...+-.|=....|.-|=+.. ++.........+..|.|++.... +..+.+.| ...+.-++-.+..+
T Consensus 34 ~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~ 113 (670)
T PF10395_consen 34 DFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTED 113 (670)
T ss_pred ccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccc
Confidence 5566666655554444554444432 22222222234455666665322 12344444 32332333322221
Q ss_pred -------ceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC--eEEEEEeC-CCCCEEEEEEcC------CCC
Q 003279 671 -------SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ--VCRLKLQG-HKNQVHSVCWNT------SGE 734 (834)
Q Consensus 671 -------~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~--~~~~~l~~-h~~~I~sl~~sp------dg~ 734 (834)
.....++....+..+.|..++..+++....|.|.+||...+ +.+..+.. +...+..-+|-+ ...
T Consensus 114 ~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~ 193 (670)
T PF10395_consen 114 GTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKD 193 (670)
T ss_pred cccCccccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCc
Confidence 12234456788999999999999999999999999999332 21112221 222121112322 123
Q ss_pred EEEE-Ee-CC---eEEEEEcCCCCCceeEEEee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 735 YLAS-VS-DE---LVRVWSIGSGSKGECIHELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 735 ~Las-gs-Dg---~I~IwDl~s~~~~~~i~~~~---~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
++++ +. ++ .++++.+.... ..+.++. .+......+.|.-....|+.- .++.|.+|++..-+..
T Consensus 194 ~ll~v~~~~~~k~~ykL~~l~~~~--~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~ 264 (670)
T PF10395_consen 194 LLLTVSQLSNSKLSYKLISLSNES--SSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQ 264 (670)
T ss_pred eEEEEEEcCCCcEEEEEEEeccCC--cceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEE
Confidence 4333 33 22 78888882211 2222332 222333333343333334443 6779999999776654
No 448
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.08 E-value=5.8 Score=47.27 Aligned_cols=195 Identities=12% Similarity=0.079 Sum_probs=94.2
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceee--eeccCCCCeEEEEEccCCCc
Q 003279 574 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR--TFTGHSTTVMSLDFHPSKED 651 (834)
Q Consensus 574 g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~--~~~~h~~~V~sl~fspdg~~ 651 (834)
-.|+||++. |..+..+.-....+..+.|+.+. .|++...+|+++||++........ -+......|..+.|..+|
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G-- 139 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG-- 139 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--
Confidence 457888754 55554443333478899999765 566667999999999875332111 011222334444444443
Q ss_pred EEEEEeCCCcEEEE-ECCCCceeeEeec-C-CC--eeEEEEecCCC---EEEEEEcCCeEEEEECCCC-eEEEEEeCCCC
Q 003279 652 LLCSCDNNSEIRYW-SINNGSCAGVFKC-Q-SG--ATQMRFQPRLG---RILAAAIENYISILDVETQ-VCRLKLQGHKN 722 (834)
Q Consensus 652 llasgs~Dg~I~lw-Dl~s~~~i~~~~~-~-~~--i~~l~~sp~g~---~ll~~s~dg~I~iwDl~t~-~~~~~l~~h~~ 722 (834)
+++-. .+|.+.+. +... ...+..+. + .. ..|....+++. .++-....-...++-.... .....+.....
T Consensus 140 Vavlt-~~g~v~~i~~~~~-~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~ 217 (829)
T KOG2280|consen 140 VAVLT-VSGQVILINGVEE-PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNS 217 (829)
T ss_pred eEEEe-cCCcEEEEcCCCc-chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCc
Confidence 33222 24444433 3322 12222211 0 11 12222222211 1111111111112222211 11122222235
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCC-ceEEEEEeCCC
Q 003279 723 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN-KFHSCVFHPTF 777 (834)
Q Consensus 723 ~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~-~I~svafspdg 777 (834)
.+..+..||+.++|+--. +|.|.+-+++.. +++.++.+... ....++|..+.
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~---~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSIDLS---QILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecchh---hhhhccCCCCCCchHhceeecCC
Confidence 677889999999999877 888888887765 44444443221 12245554443
No 449
>PLN02193 nitrile-specifier protein
Probab=93.99 E-value=8 Score=45.09 Aligned_cols=192 Identities=6% Similarity=-0.021 Sum_probs=91.1
Q ss_pred CCCEEEEEeCC-------CeEEEEecCCCCceeeeecc-CCC--Ce-EEEEEccCCCcEEEEEeCC-----CcEEEEECC
Q 003279 605 SLSRLATSSAD-------RTVRVWDTENPDYSLRTFTG-HST--TV-MSLDFHPSKEDLLCSCDNN-----SEIRYWSIN 668 (834)
Q Consensus 605 dg~~Latgs~D-------g~I~IWDl~s~~~~i~~~~~-h~~--~V-~sl~fspdg~~llasgs~D-----g~I~lwDl~ 668 (834)
++.+++.|+.+ ..+.+||+.+..+......+ ... .. .+++.. +..+++.|+.+ ..+.+||+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~--~~~lYvfGG~~~~~~~ndv~~yD~~ 252 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI--GSTLYVFGGRDASRQYNGFYSFDTT 252 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE--CCEEEEECCCCCCCCCccEEEEECC
Confidence 34566666643 24778888775543211111 000 01 112222 34566677654 368889998
Q ss_pred CCceeeEeec---CCC--eeEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEEEEe-----CCCCCEEEEEEcCCC
Q 003279 669 NGSCAGVFKC---QSG--ATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLKLQ-----GHKNQVHSVCWNTSG 733 (834)
Q Consensus 669 s~~~i~~~~~---~~~--i~~l~~sp~g~~ll~~s~d-----g~I~iwDl~t~~~~~~l~-----~h~~~I~sl~~spdg 733 (834)
+.+....... ..+ ..+++ .-++..++.|+.+ ..+..||+.+.+-...-. ..... .+++. -++
T Consensus 253 t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~-~~~~~-~~g 329 (470)
T PLN02193 253 TNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGG-AGLEV-VQG 329 (470)
T ss_pred CCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCC-cEEEE-ECC
Confidence 7654432221 111 12222 2344556666653 347788887754321110 01111 12222 256
Q ss_pred CEEEEEe-C----CeEEEEEcCCCCCceeEEEee-cCCCceEEEEEeCCCCEEEEEEcC--------------CeEEEEE
Q 003279 734 EYLASVS-D----ELVRVWSIGSGSKGECIHELS-CTGNKFHSCVFHPTFPSLLVIGCY--------------ETLELWN 793 (834)
Q Consensus 734 ~~Lasgs-D----g~I~IwDl~s~~~~~~i~~~~-~~~~~I~svafspdg~~L~sgs~d--------------g~I~Iwd 793 (834)
++++.++ + ..+.+||+.+..- ..+.... .........+..-++..++.|+.. +.+.+||
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~W-~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D 408 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDKW-TQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALD 408 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCEE-EEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEE
Confidence 6666655 4 4689999987621 1111110 011111112223345556666642 2588999
Q ss_pred CCCCeEEEe
Q 003279 794 MTENKTLTL 802 (834)
Q Consensus 794 l~~~~~~~l 802 (834)
+.+.+...+
T Consensus 409 ~~t~~W~~~ 417 (470)
T PLN02193 409 TETLQWERL 417 (470)
T ss_pred cCcCEEEEc
Confidence 988776643
No 450
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.99 E-value=7.5 Score=42.74 Aligned_cols=101 Identities=12% Similarity=0.076 Sum_probs=49.5
Q ss_pred CcEEEEEeCC-----CcEEEEECCCCcee---eEee-cCCC--eeEEEEecCCCEEEEEEc-----CCeEEEEECCCCeE
Q 003279 650 EDLLCSCDNN-----SEIRYWSINNGSCA---GVFK-CQSG--ATQMRFQPRLGRILAAAI-----ENYISILDVETQVC 713 (834)
Q Consensus 650 ~~llasgs~D-----g~I~lwDl~s~~~i---~~~~-~~~~--i~~l~~sp~g~~ll~~s~-----dg~I~iwDl~t~~~ 713 (834)
+.+++.|+.+ ..+..||+.+.+.. ..+. .... -.+++. -++..++.|+. ...+..||+.+.+-
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 4466666654 35777787765531 1111 1111 122222 24455566654 24688899886532
Q ss_pred --EEEEeCCCCCEEEEEEcCCCCEEEEEe-CC----eEEEEEcCCC
Q 003279 714 --RLKLQGHKNQVHSVCWNTSGEYLASVS-DE----LVRVWSIGSG 752 (834)
Q Consensus 714 --~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg----~I~IwDl~s~ 752 (834)
+..+... ......+..-++++++.|+ ++ .+.+||..+.
T Consensus 152 ~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 152 FELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 2222211 1112222233566666665 43 3568888765
No 451
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=93.91 E-value=3.1 Score=47.97 Aligned_cols=268 Identities=14% Similarity=0.025 Sum_probs=133.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCC-CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCcee
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 630 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~-~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i 630 (834)
..+|..+.+...| .|.+|+.|| +..||..+++.+..-.... ..|..+..+-.+ .|.+|+.+| |++.+.+.....-
T Consensus 164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence 3458888888888 455677665 6778888887776554433 566666665555 466676666 7777766522211
Q ss_pred eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce-eeEeecC---CCeeEEEEecCCCEEEEEEcCCeEEEE
Q 003279 631 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFKCQ---SGATQMRFQPRLGRILAAAIENYISIL 706 (834)
Q Consensus 631 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~-i~~~~~~---~~i~~l~~sp~g~~ll~~s~dg~I~iw 706 (834)
....-....|..+.-...|. +..|+.+|..+. ....... +...+.+ +.+.++-.+.+ +.+-+++.++.+++-
T Consensus 240 ~~~~lp~~~I~ll~qD~qG~--lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D~d-GsLWv~t~~giv~~~ 315 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQGE--LWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLDTD-GSLWVGTYGGIVRYL 315 (671)
T ss_pred cCCCCcchheeeeecccCCC--EEEeecccceeE-ecCCCCccccccccCCccccccceeeccC-CCEeeeccCceEEEe
Confidence 11122334455555444443 345665554433 3322222 2122211 23444444444 446666666666554
Q ss_pred ECCCCeEEEEEeCCCCC-EEEEEEcC---CCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003279 707 DVETQVCRLKLQGHKNQ-VHSVCWNT---SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 782 (834)
Q Consensus 707 Dl~t~~~~~~l~~h~~~-I~sl~~sp---dg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~s 782 (834)
+.. ......+...++. +-.++..| +.......+-+.+.+-+-.++.....++.. ....|+.+++..++. +..
T Consensus 316 ~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~--Rg~nit~~~~d~~g~-lWl 391 (671)
T COG3292 316 TAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQL--RGMNITTTLEDSRGR-LWL 391 (671)
T ss_pred cch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeec--cccccchhhhccCCc-EEE
Confidence 432 1111111111111 11111111 111111111223333333344222222222 234566666776554 677
Q ss_pred EEcCCeEEEEECCC-CeEEEec--cCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 783 IGCYETLELWNMTE-NKTLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 783 gs~dg~I~Iwdl~~-~~~~~l~--~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
++..+-+..|+.++ +.+.... ...++|..|-=.|+++ |..|+.+|.+++
T Consensus 392 gs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 392 GSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred EecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 77775677777766 4333222 3456788888888888 777888887653
No 452
>PHA02790 Kelch-like protein; Provisional
Probab=93.85 E-value=3.2 Score=48.55 Aligned_cols=144 Identities=8% Similarity=-0.016 Sum_probs=69.0
Q ss_pred CcEEEEEeCC--CcEEEEECCCCceeeEeecCCCe-eEEEEecCCCEEEEEEcC---CeEEEEECCCCeEEEE--EeCCC
Q 003279 650 EDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGA-TQMRFQPRLGRILAAAIE---NYISILDVETQVCRLK--LQGHK 721 (834)
Q Consensus 650 ~~llasgs~D--g~I~lwDl~s~~~i~~~~~~~~i-~~l~~sp~g~~ll~~s~d---g~I~iwDl~t~~~~~~--l~~h~ 721 (834)
+.+.+.|+.+ ..+..||..+++....-...... ......-++...++|+.+ ..+..||.++..-... .....
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r 398 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH 398 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc
Confidence 4566677653 35788888765443322222221 112223355666666654 3577888876533221 11111
Q ss_pred CCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCC
Q 003279 722 NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTE 796 (834)
Q Consensus 722 ~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d-----g~I~Iwdl~~ 796 (834)
.. .+++ .-++++.+.| |.+.+||..++. ...+........... + ..-+++..++||.+ ..|..||..+
T Consensus 399 ~~-~~~~-~~~~~IYv~G--G~~e~ydp~~~~-W~~~~~m~~~r~~~~-~-~v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 399 YK-SCAL-VFGRRLFLVG--RNAEFYCESSNT-WTLIDDPIYPRDNPE-L-IIVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred cc-ceEE-EECCEEEEEC--CceEEecCCCCc-EeEcCCCCCCccccE-E-EEECCEEEEECCcCCCcccceEEEEECCC
Confidence 11 1222 2356655655 356778887652 122222221112222 2 22355555566543 3577888777
Q ss_pred CeEE
Q 003279 797 NKTL 800 (834)
Q Consensus 797 ~~~~ 800 (834)
++..
T Consensus 472 ~~W~ 475 (480)
T PHA02790 472 YSWN 475 (480)
T ss_pred CeEE
Confidence 6553
No 453
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=93.83 E-value=6.6 Score=44.26 Aligned_cols=24 Identities=8% Similarity=0.084 Sum_probs=15.5
Q ss_pred CCCEEEEEeCC-----------CeEEEEecCCCCc
Q 003279 605 SLSRLATSSAD-----------RTVRVWDTENPDY 628 (834)
Q Consensus 605 dg~~Latgs~D-----------g~I~IWDl~s~~~ 628 (834)
++.+++.|+.+ ..+..||..+..+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W 118 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSW 118 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEE
Confidence 56677777653 2477888876554
No 454
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=93.65 E-value=0.019 Score=60.93 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=0.0
Q ss_pred HHhhhccccCCCCC
Q 003279 121 QQQQRRDSTQHLND 134 (834)
Q Consensus 121 qq~q~~~~~~~~~~ 134 (834)
||+++.++.+++||
T Consensus 371 QQ~qQ~qQq~qmng 384 (468)
T PF11498_consen 371 QQQQQQQQQHQMNG 384 (468)
T ss_dssp --------------
T ss_pred HHHHhhhhhhhccc
Confidence 34444455566776
No 455
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.61 E-value=1.4 Score=52.31 Aligned_cols=72 Identities=13% Similarity=0.167 Sum_probs=47.4
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEc--cCCCcEEEEEeCCCcEEEEEC
Q 003279 595 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH--PSKEDLLCSCDNNSEIRYWSI 667 (834)
Q Consensus 595 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fs--pdg~~llasgs~Dg~I~lwDl 667 (834)
..+.-+.-+.-++..++-+....+.|||...+...........+.|.+++|. |++..++++| ....|.+|.-
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG-f~~~v~l~~Q 103 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG-FPHHVLLYTQ 103 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEE-cCcEEEEEEc
Confidence 3445555555455545545556899999997665444443567899999985 6777666555 4777777753
No 456
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.58 E-value=0.048 Score=64.72 Aligned_cols=96 Identities=14% Similarity=0.166 Sum_probs=55.2
Q ss_pred CCcEEEEeCCCCeE-EEEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCC--CC----ceeeeeccCCCCeEEEE
Q 003279 573 DKKAVLWCTESFTV-KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN--PD----YSLRTFTGHSTTVMSLD 644 (834)
Q Consensus 573 Dg~I~IWd~~t~~~-~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~s--~~----~~i~~~~~h~~~V~sl~ 644 (834)
.+-|++-+.++.-. ...+++..+.|-.+.|-. +...++ -.-|.+.|||++- ++ ..+.........+.-|.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 45677776654321 123467788888888854 222222 2336788998763 21 22333444445556666
Q ss_pred EccC--CCcEEEEEeCCCcEEEEECCCC
Q 003279 645 FHPS--KEDLLCSCDNNSEIRYWSINNG 670 (834)
Q Consensus 645 fspd--g~~llasgs~Dg~I~lwDl~s~ 670 (834)
|.|- .+-.++.+..+++|++.+++..
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra 215 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRA 215 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechH
Confidence 6652 2346666777888888777654
No 457
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.54 E-value=5.8 Score=43.60 Aligned_cols=108 Identities=8% Similarity=0.087 Sum_probs=53.9
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeE---EEEeccCCCCe--EEEEECCCCCEEEEEeC-----CCeEEEEecCCCC
Q 003279 563 DGKLLATGGHD-----KKAVLWCTESFTV---KSTLEEHTQWI--TDVRFSPSLSRLATSSA-----DRTVRVWDTENPD 627 (834)
Q Consensus 563 dg~~Lasgs~D-----g~I~IWd~~t~~~---~~~l~~h~~~I--~~l~fspdg~~Latgs~-----Dg~I~IWDl~s~~ 627 (834)
++.+++.|+.+ ..+..||+.+.+- ...+..-..+. .+++. -++++++.|+. ...+.+||+.+..
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 55677777754 3566777766543 12221111111 12222 25666677764 2468889988766
Q ss_pred ceeee-eccCCCCeEEEEEccCCCcEEEEEeCCC----cEEEEECCCCcee
Q 003279 628 YSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNGSCA 673 (834)
Q Consensus 628 ~~i~~-~~~h~~~V~sl~fspdg~~llasgs~Dg----~I~lwDl~s~~~i 673 (834)
+.... +.... .....+...+ +.+++.|+.++ .+.+||+.+.+-.
T Consensus 151 W~~~~~~p~~~-r~~~~~~~~~-~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 151 WFELPDFPGEP-RVQPVCVKLQ-NELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred eeECCCCCCCC-CCcceEEEEC-CEEEEEcCCCCccccceEEEecCCCeeE
Confidence 53221 11111 1111222223 44666776553 3568898876543
No 458
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.47 E-value=2.6 Score=39.90 Aligned_cols=119 Identities=12% Similarity=0.055 Sum_probs=78.6
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEecCCCCce------eeeeccCCCCeEEEEEcc----CCCcEEEEEeCCCcEEEEEC
Q 003279 598 TDVRFSPSLSRLATSSADRTVRVWDTENPDYS------LRTFTGHSTTVMSLDFHP----SKEDLLCSCDNNSEIRYWSI 667 (834)
Q Consensus 598 ~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~------i~~~~~h~~~V~sl~fsp----dg~~llasgs~Dg~I~lwDl 667 (834)
..-+|......|+.++.-|.|.|++....... -..+......|++|+--+ ++..+|+.|+ ...|..||+
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 34456666678888899999999987643211 112333556788886543 2355666666 668999999
Q ss_pred CCCceeeEeecCCCeeEEEEec---CCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 003279 668 NNGSCAGVFKCQSGATQMRFQP---RLGRILAAAIENYISILDVETQVCRLKL 717 (834)
Q Consensus 668 ~s~~~i~~~~~~~~i~~l~~sp---~g~~ll~~s~dg~I~iwDl~t~~~~~~l 717 (834)
....-+.......++.++.+-. ...-++..+.+..|.-||.+-.+...+.
T Consensus 81 ~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 81 ENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 9888777666778888887743 2234666666677777777665555443
No 459
>PLN02193 nitrile-specifier protein
Probab=93.36 E-value=20 Score=41.83 Aligned_cols=174 Identities=7% Similarity=-0.033 Sum_probs=81.9
Q ss_pred CcEEEEEeCC-------CcEEEEECCCCceeeEeec---CC--CeeEEEEecCCCEEEEEEcC-----CeEEEEECCCCe
Q 003279 650 EDLLCSCDNN-------SEIRYWSINNGSCAGVFKC---QS--GATQMRFQPRLGRILAAAIE-----NYISILDVETQV 712 (834)
Q Consensus 650 ~~llasgs~D-------g~I~lwDl~s~~~i~~~~~---~~--~i~~l~~sp~g~~ll~~s~d-----g~I~iwDl~t~~ 712 (834)
+.+++.|+.+ ..+.+||+.+.+-...-.. .. ........-++..++.|+.+ +.+.+||+.+.+
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 4466666642 2477889887654321110 11 11111222344555666654 468899998764
Q ss_pred EEE--EEe--CCCCCEEEEEEcCCCCEEEEEe-CC-----eEEEEEcCCCCCceeEEEe---ecCCCceEEEEEeCCCCE
Q 003279 713 CRL--KLQ--GHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHEL---SCTGNKFHSCVFHPTFPS 779 (834)
Q Consensus 713 ~~~--~l~--~h~~~I~sl~~spdg~~Lasgs-Dg-----~I~IwDl~s~~~~~~i~~~---~~~~~~I~svafspdg~~ 779 (834)
-.. ... .....-.+++. -++++++.|+ ++ .+.+||+.+..- ..+... ...... ..++. -+++.
T Consensus 256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~~~~R~~-~~~~~-~~gki 331 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW-FHCSTPGDSFSIRGG-AGLEV-VQGKV 331 (470)
T ss_pred EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE-EeCCCCCCCCCCCCC-cEEEE-ECCcE
Confidence 322 111 01111122222 2455555554 32 467888776521 111100 001111 12222 25566
Q ss_pred EEEEEcC----CeEEEEECCCCeEEEeccC----CCCeEEEEEeCCCCEEEEEecC
Q 003279 780 LLVIGCY----ETLELWNMTENKTLTLSAH----DKLVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 780 L~sgs~d----g~I~Iwdl~~~~~~~l~~h----~~~V~~lafspdg~~LaSgs~D 827 (834)
+++++.+ ..|.+||+.+.+...+... .....+.+..-++++++.|+.+
T Consensus 332 yviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~ 387 (470)
T PLN02193 332 WVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEI 387 (470)
T ss_pred EEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCcc
Confidence 6666654 4699999998877654322 1111112223356777777753
No 460
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.18 E-value=0.065 Score=63.65 Aligned_cols=163 Identities=9% Similarity=0.092 Sum_probs=90.5
Q ss_pred EecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCC--CCeEEE-----EeccCCCCeEEEEECC---CCCEEEEEeCC
Q 003279 547 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE--SFTVKS-----TLEEHTQWITDVRFSP---SLSRLATSSAD 615 (834)
Q Consensus 547 ~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~IWd~~--t~~~~~-----~l~~h~~~I~~l~fsp---dg~~Latgs~D 615 (834)
.++|..+.|-.+.|-. +...++ -.-|.+.|||++ .|+... ........+.-|.|+| +.-++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 4556677787887743 222222 223678899875 343322 2222334445566665 56778888888
Q ss_pred CeEEEEecCCCCceeeeeccCCCCeEEEE-----------EccCCCcEEEEEeCCCcEEEEECC-----CCceeeEeecC
Q 003279 616 RTVRVWDTENPDYSLRTFTGHSTTVMSLD-----------FHPSKEDLLCSCDNNSEIRYWSIN-----NGSCAGVFKCQ 679 (834)
Q Consensus 616 g~I~IWDl~s~~~~i~~~~~h~~~V~sl~-----------fspdg~~llasgs~Dg~I~lwDl~-----s~~~i~~~~~~ 679 (834)
++|++.+++... ...+.+|...+..++ .+|||. +|+.+..||.+++|.+- ...|....+.+
T Consensus 205 ~~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~~~~rclhewkph 281 (1283)
T KOG1916|consen 205 GEIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYITGKIVHRCLHEWKPH 281 (1283)
T ss_pred CceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeeeeccccHhhhhccCCC
Confidence 999998887533 245556777666554 467765 55566667777776542 22333444433
Q ss_pred CCeeEEEEecCC---------C--EEEEEEc-CCeEEEEECCCCeEE
Q 003279 680 SGATQMRFQPRL---------G--RILAAAI-ENYISILDVETQVCR 714 (834)
Q Consensus 680 ~~i~~l~~sp~g---------~--~ll~~s~-dg~I~iwDl~t~~~~ 714 (834)
.+-..+||..+. . ++++++. +..+++|.....+|.
T Consensus 282 d~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 282 DKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 332233332211 1 2233332 356788877766665
No 461
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=92.95 E-value=15 Score=43.07 Aligned_cols=226 Identities=13% Similarity=0.124 Sum_probs=111.6
Q ss_pred CCCCCEEEEEeCCCeEEEEecCCCCc-eeeeeccC-CCCeEEEEEccCCCcEEEEEeC--CCcEEEEECCCCceeeEeec
Q 003279 603 SPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGH-STTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFKC 678 (834)
Q Consensus 603 spdg~~Latgs~Dg~I~IWDl~s~~~-~i~~~~~h-~~~V~sl~fspdg~~llasgs~--Dg~I~lwDl~s~~~i~~~~~ 678 (834)
..++..++.+..+|.++...+..... ......+. .....++++..++..+++.|+. |+.+..|....-+.+..+..
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 44677899999999999888875431 11222222 4556777777665445656664 45666666555566667777
Q ss_pred CCCeeEEEEecC----CC------EEEEEEc---CCeEEEEECCCCeE--EEEEeCCCC--CEEEEEEcC-CCCEEEEEe
Q 003279 679 QSGATQMRFQPR----LG------RILAAAI---ENYISILDVETQVC--RLKLQGHKN--QVHSVCWNT-SGEYLASVS 740 (834)
Q Consensus 679 ~~~i~~l~~sp~----g~------~ll~~s~---dg~I~iwDl~t~~~--~~~l~~h~~--~I~sl~~sp-dg~~Lasgs 740 (834)
-+++..+++.+. .. .+++++. +|.++++.-.-+-. ........+ .++.+.... ++.+|+.+.
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~ 378 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSF 378 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEc
Confidence 788998888642 22 5666654 57888774322211 222222222 233333222 256888777
Q ss_pred CCeEEEEEcCCCCCceeEEE-----eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE-e-ccCCCCeEEEE
Q 003279 741 DELVRVWSIGSGSKGECIHE-----LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-L-SAHDKLVSSLA 813 (834)
Q Consensus 741 Dg~I~IwDl~s~~~~~~i~~-----~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~-l-~~h~~~V~~la 813 (834)
...-+|+.+........+.. +......+.+..+. +..++=.... .|++.+....+... + ......|.+.+
T Consensus 379 ~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~~I~~a~ 455 (504)
T PF10433_consen 379 PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGSIIVAAS 455 (504)
T ss_dssp SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESS-EEEEEESSSTSEEEEEE-TTS---SEEE
T ss_pred CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecC-eEEEEECCCCeEEEEEeCCCCCeEEEEE
Confidence 66667777752111122211 11122223222332 3344444444 58888877776663 2 23444555555
Q ss_pred EeCCCCEEEEEecCCcEEEe
Q 003279 814 ASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 814 fspdg~~LaSgs~DG~I~IW 833 (834)
+. +.+++.+-.++.+.++
T Consensus 456 ~~--~~~v~v~~~~~~~~~~ 473 (504)
T PF10433_consen 456 IN--DPQVLVALSGGELVYF 473 (504)
T ss_dssp ES--SSEEEEEE-TTEEEEE
T ss_pred EC--CCEEEEEEeCCcEEEE
Confidence 43 3455555556666554
No 462
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.92 E-value=3.7 Score=41.66 Aligned_cols=176 Identities=13% Similarity=0.082 Sum_probs=100.6
Q ss_pred CCCEEEEEeC--CCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCe
Q 003279 605 SLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA 682 (834)
Q Consensus 605 dg~~Latgs~--Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i 682 (834)
++.++.+.+. ...|++||+.+++.....-.. ...+..=-...-++.+..-.-.+|.-..+|.++.+++..+...+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence 4566666554 347999999987753322222 1222221112223445555667899999999999999888877766
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCCeEE----EEEeC-CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCce
Q 003279 683 TQMRFQPRLGRILAAAIENYISILDVETQVCR----LKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 756 (834)
Q Consensus 683 ~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~----~~l~~-h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~ 756 (834)
..++. ++..|+.+.....++.-|.++-... .++.+ .-..++.+.|- +|.+++-.- +..|...|..+++...
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 66654 4455777777777888787654322 22222 11233344443 455555444 5556666666653211
Q ss_pred eE---------EEeecCCCceEEEEEeCCCCEEEEEE
Q 003279 757 CI---------HELSCTGNKFHSCVFHPTFPSLLVIG 784 (834)
Q Consensus 757 ~i---------~~~~~~~~~I~svafspdg~~L~sgs 784 (834)
.+ ..-..+....+.+++.|+...++..+
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 11 11122345678889999886555544
No 463
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=92.89 E-value=11 Score=41.72 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=22.7
Q ss_pred eEEEEECCCCeEEEeccCCCCe-EEEEEeCCCCEEEEEecC
Q 003279 788 TLELWNMTENKTLTLSAHDKLV-SSLAASTVNGMVASASHD 827 (834)
Q Consensus 788 ~I~Iwdl~~~~~~~l~~h~~~V-~~lafspdg~~LaSgs~D 827 (834)
.+.+||.++.+...+....... .+.+..-++++++.|+.+
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred EeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccC
Confidence 4678888776654332222222 222334578888888765
No 464
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.86 E-value=0.82 Score=56.21 Aligned_cols=141 Identities=11% Similarity=0.022 Sum_probs=86.4
Q ss_pred CeeEEEEecCCCEEEEEEcC--CeEEEEECCCCeEE-----EEEeC------CCCCEEEEEEcCCCC--EEEEEeCCeEE
Q 003279 681 GATQMRFQPRLGRILAAAIE--NYISILDVETQVCR-----LKLQG------HKNQVHSVCWNTSGE--YLASVSDELVR 745 (834)
Q Consensus 681 ~i~~l~~sp~g~~ll~~s~d--g~I~iwDl~t~~~~-----~~l~~------h~~~I~sl~~spdg~--~LasgsDg~I~ 745 (834)
.+..+...+|+...++.... -.|+.||+++-... .-+.. ......++.|.|.-. .+++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 34555556665555554443 37889998763211 11111 223456788888643 33333488898
Q ss_pred EEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEec----cCCCCeEEEEEeCCCCEE
Q 003279 746 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS----AHDKLVSSLAASTVNGMV 821 (834)
Q Consensus 746 IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~----~h~~~V~~lafspdg~~L 821 (834)
|..+.-.. ..+.. -......++++|+|.|+.+++|-..|++.-|...-.....+. .....|.+|+|-....++
T Consensus 182 V~~~~~~~--~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 182 VKSTKQLA--QNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhh--hhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEE
Confidence 88775431 11111 123456899999999999999999999988875443222221 124689999998877766
Q ss_pred EEE
Q 003279 822 ASA 824 (834)
Q Consensus 822 aSg 824 (834)
|+-
T Consensus 259 vvy 261 (1405)
T KOG3630|consen 259 VVY 261 (1405)
T ss_pred EEe
Confidence 643
No 465
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=92.85 E-value=32 Score=42.86 Aligned_cols=264 Identities=11% Similarity=0.070 Sum_probs=136.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE---------EEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV---------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 625 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~---------~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s 625 (834)
|..-.+.++...+++-+.+|.|+-.+..+... ...++. .+.+..+........|+..+.+|.+...+...
T Consensus 487 i~~edli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~ 565 (800)
T TIGR01063 487 IDIEDLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKD-DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQ 565 (800)
T ss_pred cchhhccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCC-CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhh
Confidence 33344556677788889999998886654322 112222 23455555555566677777788776665432
Q ss_pred ---CC-----cee---eeeccCCCCeEEEEEcc-CCCcEEEEEeCCCcEEEEECCCCc-------eeeEeecCCCeeEEE
Q 003279 626 ---PD-----YSL---RTFTGHSTTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINNGS-------CAGVFKCQSGATQMR 686 (834)
Q Consensus 626 ---~~-----~~i---~~~~~h~~~V~sl~fsp-dg~~llasgs~Dg~I~lwDl~s~~-------~i~~~~~~~~i~~l~ 686 (834)
.. ..+ ..+.....-|.++.+.. +....++..+.+|.++-.++..-. ....+...+.+..+.
T Consensus 566 IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~D~lv~v~ 645 (800)
T TIGR01063 566 IPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVR 645 (800)
T ss_pred CcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCCCEEEEEE
Confidence 11 011 11222223344444322 123356678889999988775422 112222344455555
Q ss_pred EecCCCEEEEEEcCCeEEEEECCC---------CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC---
Q 003279 687 FQPRLGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS--- 753 (834)
Q Consensus 687 ~sp~g~~ll~~s~dg~I~iwDl~t---------~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~--- 753 (834)
.......+++.+..|.+..+.+.. |.....+. ....|.++....++.+++..+ .|.++...+..-.
T Consensus 646 ~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~-~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~ 724 (800)
T TIGR01063 646 LTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLK-NEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETS 724 (800)
T ss_pred EeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCC-CCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccC
Confidence 555556788888888776665532 22222332 233455544434444455544 8877777654221
Q ss_pred ---CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEE
Q 003279 754 ---KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 823 (834)
Q Consensus 754 ---~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaS 823 (834)
.......+......+..+....+...++..+.+|.+..++...-... ......|..+.... +..++.
T Consensus 725 R~~kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~eI~~~--gR~a~GVk~i~L~~-~D~vv~ 794 (800)
T TIGR01063 725 RGGKGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQDVSEQ--GRNTQGVRLIRLDE-DDKLVS 794 (800)
T ss_pred CCCcceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHhhCCcc--ccCCCCeeeeeeCC-CCEEEE
Confidence 11122222222344444444444456777788887777766532211 12233466666643 334443
No 466
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.83 E-value=3.6 Score=41.72 Aligned_cols=170 Identities=8% Similarity=-0.017 Sum_probs=91.7
Q ss_pred CcEEEEEeC--CCcEEEEECCCCceeeEeecC-CCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEEeCCCCCEE
Q 003279 650 EDLLCSCDN--NSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVH 725 (834)
Q Consensus 650 ~~llasgs~--Dg~I~lwDl~s~~~i~~~~~~-~~i~~l~~sp~g~~ll~~s-~dg~I~iwDl~t~~~~~~l~~h~~~I~ 725 (834)
.+++.+.+. ...|++||+.+++.+...+.. ..+..=-+..-+.++..-. .+|.-.+||.++.+++..+. ..+.=.
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeGW 134 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEGW 134 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcce
Confidence 356666654 347999999999888766654 1222111222234444444 47888999999887776654 333445
Q ss_pred EEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc---eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE
Q 003279 726 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK---FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT 801 (834)
Q Consensus 726 sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~---I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~ 801 (834)
.++. |++-|..++ ..+++.-|-++......+... ....+ ++.+.|- +|...+-.-.+..|...|..+|+++.
T Consensus 135 gLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT-~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 135 GLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVT-DDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeec--CCcceEeeCCceEEEecCHHHhhhcceEEEE-ECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 5553 444455444 456666665544221222111 11111 1222232 33333333444456666666666552
Q ss_pred e-------------ccCCCCeEEEEEeCCC-CEEEEE
Q 003279 802 L-------------SAHDKLVSSLAASTVN-GMVASA 824 (834)
Q Consensus 802 l-------------~~h~~~V~~lafspdg-~~LaSg 824 (834)
. ..|....+.+++.|++ ++++||
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 1 2345678899999988 455665
No 467
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.83 E-value=1.3 Score=50.08 Aligned_cols=142 Identities=12% Similarity=0.137 Sum_probs=93.2
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCC-------EEEEEEcCCeEEEEECCCC-eE--EEEE
Q 003279 648 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG-------RILAAAIENYISILDVETQ-VC--RLKL 717 (834)
Q Consensus 648 dg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~-------~ll~~s~dg~I~iwDl~t~-~~--~~~l 717 (834)
+...++..++....++-.|++.|+.+.....+..+ -+.|.|..+ .-++|-++..|.-.|.+-. .. +...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence 33444555666678888999999999999987777 777887532 3466777777777787643 22 2222
Q ss_pred eC--CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 718 QG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 718 ~~--h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
+. ......|..-. ..-|+++++ .|-|++||--.. .....+.+-+..|..+..+.+|++|++.+. ..|.+.|+
T Consensus 557 KdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~---rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 557 KDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGK---RAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV 631 (776)
T ss_pred hhccccccccccccc-cCceEEEecCCCceeeehhhcc---hhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence 11 12233333333 344677777 889999996443 233345566788999999999998776554 46777776
Q ss_pred C
Q 003279 795 T 795 (834)
Q Consensus 795 ~ 795 (834)
.
T Consensus 632 ~ 632 (776)
T COG5167 632 P 632 (776)
T ss_pred c
Confidence 3
No 468
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.79 E-value=0.32 Score=37.33 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=28.6
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEecC
Q 003279 594 TQWITDVRFSPSLSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 594 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 624 (834)
...|.+++|+|...+||.++.||.|.||.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999994
No 469
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.69 E-value=3.1 Score=39.32 Aligned_cols=111 Identities=10% Similarity=0.101 Sum_probs=72.2
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCe--------EEEEEeCCCCCEEEEEEcC-----CCCEEEEEeCCeEEEEEcCC
Q 003279 685 MRFQPRLGRILAAAIENYISILDVETQV--------CRLKLQGHKNQVHSVCWNT-----SGEYLASVSDELVRVWSIGS 751 (834)
Q Consensus 685 l~~sp~g~~ll~~s~dg~I~iwDl~t~~--------~~~~l~~h~~~I~sl~~sp-----dg~~LasgsDg~I~IwDl~s 751 (834)
-.|......|++++..|.|.|++..... .+..+. -...|++|+-.+ +...|+.|+...|.+||+..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence 3455555678888889999999876432 233333 456777775543 45688999999999999987
Q ss_pred CCCceeEEEeecCCCceEEEEEe---CCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 752 GSKGECIHELSCTGNKFHSCVFH---PTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 752 ~~~~~~i~~~~~~~~~I~svafs---pdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
... ...++ -...+.++.+- ....-++..+.+..|.-||....+.+
T Consensus 83 N~d-~Fyke---~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 83 NSD-LFYKE---VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred Cch-hhhhh---CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 632 11222 23456666553 32334677777778888888777665
No 470
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.66 E-value=0.033 Score=62.19 Aligned_cols=148 Identities=12% Similarity=0.121 Sum_probs=105.8
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceee-E
Q 003279 597 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-V 675 (834)
Q Consensus 597 I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~-~ 675 (834)
.....|.+.+.-++.++.+..|..||-.... ..-....+....++|..+++.+++.+-..+.+.+||+.+...-. .
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~---~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQV---ILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcce---ecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence 3455677777778888888889999876422 22222456677889999888888888889999999998643221 1
Q ss_pred eecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEE
Q 003279 676 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVW 747 (834)
Q Consensus 676 ~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~Iw 747 (834)
+.....-.-+.|++....++.+...+.+.||+..+.+.+.....|...+++++|.+.+..+..+.|..+.+-
T Consensus 114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVT 185 (615)
T ss_pred ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHHh
Confidence 111122223678888888999988999999999887766666558999999999998776665545544433
No 471
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.59 E-value=3.6 Score=49.57 Aligned_cols=101 Identities=9% Similarity=0.144 Sum_probs=66.8
Q ss_pred CCcEEEEEeCCCcEEEEECCC-------C-------------ceeeEeecCCCeeEEEEe--cCCCEEEEEEcCCeEEEE
Q 003279 649 KEDLLCSCDNNSEIRYWSINN-------G-------------SCAGVFKCQSGATQMRFQ--PRLGRILAAAIENYISIL 706 (834)
Q Consensus 649 g~~llasgs~Dg~I~lwDl~s-------~-------------~~i~~~~~~~~i~~l~~s--p~g~~ll~~s~dg~I~iw 706 (834)
+..+|+.|.+||.|.+|.+++ . ++...+..+..+..++++ ...+.|++++....|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 456888999999999996521 0 123344456678889998 666777777777777776
Q ss_pred ECCCC--eE-EEEEeCCCCCEEEEEEcCCC-----C-EEEEEe-CCeEEEEEc
Q 003279 707 DVETQ--VC-RLKLQGHKNQVHSVCWNTSG-----E-YLASVS-DELVRVWSI 749 (834)
Q Consensus 707 Dl~t~--~~-~~~l~~h~~~I~sl~~spdg-----~-~Lasgs-Dg~I~IwDl 749 (834)
-.... +. ...-..|...|-+|+|-++. . +|++++ .|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 54431 11 11111256678899997643 2 677777 998888887
No 472
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.51 E-value=9.4 Score=43.02 Aligned_cols=151 Identities=15% Similarity=0.118 Sum_probs=86.2
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCC---eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc---ee
Q 003279 557 SCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SL 630 (834)
Q Consensus 557 sl~fSpdg~~Lasgs~Dg~I~IWd~~t~---~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~---~i 630 (834)
.+-|...++.| .+...|.+.=|-+... -++..-....++|.+|.|++|.+.||+--.|++|.+++...... ..
T Consensus 27 gvFfDDaNkql-favrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 27 GVFFDDANKQL-FAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred ceeeccCcceE-EEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 34444333333 3334455666654321 22222234567999999999999999999999999999843221 11
Q ss_pred eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC--CceeeEeecCCCeeEEEEecCCCEEEEEEc--CCeEEEE
Q 003279 631 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--GSCAGVFKCQSGATQMRFQPRLGRILAAAI--ENYISIL 706 (834)
Q Consensus 631 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s--~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~--dg~I~iw 706 (834)
......+..|..++|+.+.+ +.+.. +.-+.+|-+.. ......-.+.-.|.-..|.++.+.++.++. .+.+.-+
T Consensus 106 ~~ck~k~~~IlGF~W~~s~e-~A~i~--~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf 182 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSSTE-IAFIT--DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPF 182 (657)
T ss_pred HHhccCcceeEEEEEecCee-EEEEe--cCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccE
Confidence 22233445688999987633 43333 22355554432 222222223466777888888776555544 4455555
Q ss_pred ECCCC
Q 003279 707 DVETQ 711 (834)
Q Consensus 707 Dl~t~ 711 (834)
-++++
T Consensus 183 ~~~~~ 187 (657)
T KOG2377|consen 183 HFRAG 187 (657)
T ss_pred EEeec
Confidence 55544
No 473
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.51 E-value=5 Score=41.13 Aligned_cols=141 Identities=20% Similarity=0.242 Sum_probs=81.5
Q ss_pred CEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC--C---cEEEE-ECCC----Cceee--
Q 003279 607 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--S---EIRYW-SINN----GSCAG-- 674 (834)
Q Consensus 607 ~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D--g---~I~lw-Dl~s----~~~i~-- 674 (834)
+.|+.+.....|.+|++.........-...-+.|..+.++..|++++..=.+. . .+++| |++. ...+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 45555567778999999854443333333448899999999988665432221 1 45554 2221 11111
Q ss_pred ---------------------EeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE------EEEEeC----C-CC
Q 003279 675 ---------------------VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC------RLKLQG----H-KN 722 (834)
Q Consensus 675 ---------------------~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~------~~~l~~----h-~~ 722 (834)
.+.....+.+++..|-.+.|++|+ ++.+.+|.+..... ...|.. | .+
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~ 187 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN 187 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence 122234567888888767777665 46788887664432 111111 1 11
Q ss_pred -CEEEEEEcCCCCEEEEEeCCeEEEEEcC
Q 003279 723 -QVHSVCWNTSGEYLASVSDELVRVWSIG 750 (834)
Q Consensus 723 -~I~sl~~spdg~~LasgsDg~I~IwDl~ 750 (834)
.+..+++ .+.|+|..++..++++.+.
T Consensus 188 ~~p~~v~i--c~~yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 188 FKPTQVAI--CEGYIAVMSDLEVLVLKLE 214 (215)
T ss_pred ceEEEEEE--EeeEEEEecCCEEEEEEEe
Confidence 1334444 3678888888888888763
No 474
>PRK05560 DNA gyrase subunit A; Validated
Probab=92.38 E-value=28 Score=43.44 Aligned_cols=227 Identities=8% Similarity=0.008 Sum_probs=110.3
Q ss_pred CCCCCEEEEEeCCCeEEEEecCCCCc--------eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE---CCCC-
Q 003279 603 SPSLSRLATSSADRTVRVWDTENPDY--------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS---INNG- 670 (834)
Q Consensus 603 spdg~~Latgs~Dg~I~IWDl~s~~~--------~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwD---l~s~- 670 (834)
-++...+++-+.+|.|+.-.+.+-.. ....+. ..+.+..+........+++..+ .|.+.... +...
T Consensus 495 I~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klK-e~D~l~~~~~~~t~d~LllfTs-~Grv~~l~v~~iP~~~ 572 (805)
T PRK05560 495 IPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTK-EDDFVEHLFVASTHDTLLFFTN-RGRVYRLKVYEIPEAS 572 (805)
T ss_pred cCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccC-CCCeeEEEEEecCCCeEEEEec-CCeEEEEEhhhCcCCC
Confidence 34566778888888888776543110 011111 1234444444444454554443 56555543 3322
Q ss_pred -----ceee---EeecCCCe-eEEEEe--cCCCEEEEEEcCCeEEEEECCC-------CeEEEEEeCCCCCEEEEEEcCC
Q 003279 671 -----SCAG---VFKCQSGA-TQMRFQ--PRLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNTS 732 (834)
Q Consensus 671 -----~~i~---~~~~~~~i-~~l~~s--p~g~~ll~~s~dg~I~iwDl~t-------~~~~~~l~~h~~~I~sl~~spd 732 (834)
..+. .+.....| .++.+. ++...+++.+.+|.++-.++.. +.....+.....-+..+..+.+
T Consensus 573 ~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~~ 652 (805)
T PRK05560 573 RTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDGD 652 (805)
T ss_pred cCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCCC
Confidence 2221 12222333 334444 2567899999999988876643 2333344433333333333434
Q ss_pred CCEEEEEeCCeEEEEEcCCCC------CceeEEEeecCCCceEE-EEEeCCCCEEEEEEcCCeEEEEECCCC-------e
Q 003279 733 GEYLASVSDELVRVWSIGSGS------KGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCYETLELWNMTEN-------K 798 (834)
Q Consensus 733 g~~LasgsDg~I~IwDl~s~~------~~~~i~~~~~~~~~I~s-vafspdg~~L~sgs~dg~I~Iwdl~~~-------~ 798 (834)
..+++.+..|.+..+.+..-. .+..+..+.. ...|.. +.+.++..+++..+..|.++...+..- +
T Consensus 653 d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~k 731 (805)
T PRK05560 653 DDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGK 731 (805)
T ss_pred CEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCC
Confidence 445555557766655543211 1122222322 233443 344444447888888898877764321 1
Q ss_pred -EE--EeccCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 799 -TL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 799 -~~--~l~~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
.. .+....+.+..+........++..+.+|.+..
T Consensus 732 G~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lr 768 (805)
T PRK05560 732 GVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIR 768 (805)
T ss_pred cEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEE
Confidence 11 22232344444433333344555566676543
No 475
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=92.34 E-value=21 Score=39.52 Aligned_cols=40 Identities=5% Similarity=-0.081 Sum_probs=20.4
Q ss_pred CcEEEEECCCCceeeEeecCC--CeeEEEEecCCCEEEEEEc
Q 003279 660 SEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLGRILAAAI 699 (834)
Q Consensus 660 g~I~lwDl~s~~~i~~~~~~~--~i~~l~~sp~g~~ll~~s~ 699 (834)
..|.+||..+.+-...-.... .........+++.+++++.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 209 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGE 209 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeee
Confidence 468889988765443322211 1122223345566667665
No 476
>PRK05560 DNA gyrase subunit A; Validated
Probab=92.23 E-value=38 Score=42.25 Aligned_cols=255 Identities=11% Similarity=0.045 Sum_probs=132.6
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCeE---------EEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC---CC
Q 003279 559 HFSPDGKLLATGGHDKKAVLWCTESFTV---------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NP 626 (834)
Q Consensus 559 ~fSpdg~~Lasgs~Dg~I~IWd~~t~~~---------~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~---s~ 626 (834)
.+-++...+++-+.+|.|+.-++.+... ...++.. +.+..+........|+..+..|.+....+. ..
T Consensus 493 dlI~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~-D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~ 571 (805)
T PRK05560 493 DLIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKED-DFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEA 571 (805)
T ss_pred hccCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCC-CeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCC
Confidence 4456777888899999998886554321 1122222 344444444556667777777877666443 21
Q ss_pred C-----cee---eeeccCCCCeEEEEEccC-CCcEEEEEeCCCcEEEEECCCC-------ceeeEeecCCCeeEEEEecC
Q 003279 627 D-----YSL---RTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNG-------SCAGVFKCQSGATQMRFQPR 690 (834)
Q Consensus 627 ~-----~~i---~~~~~h~~~V~sl~fspd-g~~llasgs~Dg~I~lwDl~s~-------~~i~~~~~~~~i~~l~~sp~ 690 (834)
. ..+ ..+.....-|.++.+... ....++..+.+|.++..++..- .....+...+.+..+.....
T Consensus 572 ~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~ 651 (805)
T PRK05560 572 SRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDG 651 (805)
T ss_pred CcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCC
Confidence 1 111 112222233444455421 2335667888999988776432 22223333445555555555
Q ss_pred CCEEEEEEcCCeEEEEECCC---------CeEEEEEeCCCCCEEE-EEEcCCCCEEEEEe-CCeEEEEEcCCCC------
Q 003279 691 LGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHS-VCWNTSGEYLASVS-DELVRVWSIGSGS------ 753 (834)
Q Consensus 691 g~~ll~~s~dg~I~iwDl~t---------~~~~~~l~~h~~~I~s-l~~spdg~~Lasgs-Dg~I~IwDl~s~~------ 753 (834)
...+++.+..|.+..+.+.. |.....+.. ...|.+ +.+.+++.+++..+ .|.++...+..-.
T Consensus 652 ~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~ 730 (805)
T PRK05560 652 DDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGG 730 (805)
T ss_pred CCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCC
Confidence 67788888888777776532 222233332 233443 44444443555555 8888877654211
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCC
Q 003279 754 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV 817 (834)
Q Consensus 754 ~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspd 817 (834)
.......+......+..+........++..+.+|.+..++...-.. .......|..+.+..+
T Consensus 731 kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~eI~~--~gR~a~GVk~I~L~~~ 792 (805)
T PRK05560 731 KGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSEISI--TGRNTQGVRLIRLDEG 792 (805)
T ss_pred CcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHHCCc--cccCCCCeeeEecCCC
Confidence 1122222222233444443334445577778888777777653221 1122344666666443
No 477
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=91.91 E-value=22 Score=38.81 Aligned_cols=234 Identities=14% Similarity=0.015 Sum_probs=114.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCC--CeEEEEeccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEecCCCCc-----------
Q 003279 563 DGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDY----------- 628 (834)
Q Consensus 563 dg~~Lasgs~Dg~I~IWd~~t--~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~s~~~----------- 628 (834)
++++|+.|+++|...+. +.. .+....+ +...|+++...+..+.|++-+ ....++++++..-..
T Consensus 12 ~~~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 34689999998855554 554 3344443 456899999998777666554 334599999842111
Q ss_pred ---eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC----ceeeEe---e--cCCCeeEEEEecC--CCEE
Q 003279 629 ---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVF---K--CQSGATQMRFQPR--LGRI 694 (834)
Q Consensus 629 ---~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~----~~i~~~---~--~~~~i~~l~~sp~--g~~l 694 (834)
.......|......+.+......+++++.....|.++..... ...+.+ . .+..+..+..++. ...+
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 001122343333333333222223334444566776644321 111111 1 1222333333332 4566
Q ss_pred EEEEcCCeEEEEECCC--CeEE-----EEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCc
Q 003279 695 LAAAIENYISILDVET--QVCR-----LKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNK 767 (834)
Q Consensus 695 l~~s~dg~I~iwDl~t--~~~~-----~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~ 767 (834)
.+|+..+...++++.. .... ...........++..-+++.+|+ +.|....+.|...... .....+. -...
T Consensus 169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Ll-c~~~~~v~Vn~~G~~~-~r~~~l~-w~~~ 245 (302)
T smart00036 169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLL-CYDEFGVFVNLYGKRR-SRNPILH-WEFM 245 (302)
T ss_pred EEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEE-EECcEEEEEeCCCCcc-ccceEEE-cCCc
Confidence 6666643444454432 1000 00111110233343344555555 4455455555543111 1111222 1334
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccC
Q 003279 768 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH 805 (834)
Q Consensus 768 I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h 805 (834)
..++++.. ++|++... +.|.|+++.+++.+....+
T Consensus 246 p~~~~~~~--pyll~~~~-~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 246 PESFAYHS--PYLLAFHD-NGIEIRSIKTGELLQELAD 280 (302)
T ss_pred ccEEEEEC--CEEEEEcC-CcEEEEECCCCceEEEEec
Confidence 55667763 56776654 4599999999987744443
No 478
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=91.74 E-value=37 Score=41.08 Aligned_cols=149 Identities=18% Similarity=0.192 Sum_probs=82.9
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCc--EEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC------CCe--
Q 003279 548 IPASTSKVESCHFSPDGKLLATGGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA------DRT-- 617 (834)
Q Consensus 548 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~--I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~------Dg~-- 617 (834)
...+...+..+.|+|+|..++..+.++. ..+|-+.... .+..+...|....|++++..++.... |+.
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 131 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG---LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDH 131 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC---ceeeeecccccceeCCCCCeEEEEecccccccCCcee
Confidence 4456777889999999999998874332 3334332221 34445667888899998888776211 222
Q ss_pred -----EEEEecCCC-Cc----------eeeeeccCCCCeEEEEEccCCCcEEEEEeCC---C---cEEEEECCCCceeeE
Q 003279 618 -----VRVWDTENP-DY----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---S---EIRYWSINNGSCAGV 675 (834)
Q Consensus 618 -----I~IWDl~s~-~~----------~i~~~~~h~~~V~sl~fspdg~~llasgs~D---g---~I~lwDl~s~~~i~~ 675 (834)
+.+|....+ .. ...........+....+++++..++.+...+ . ...++...++.....
T Consensus 132 ~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (620)
T COG1506 132 LFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELESL 211 (620)
T ss_pred eeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCceEEE
Confidence 233333222 11 1122233445566666666555433332222 1 223333345555555
Q ss_pred eecCCCeeEEEEecCCCEEEEEEc
Q 003279 676 FKCQSGATQMRFQPRLGRILAAAI 699 (834)
Q Consensus 676 ~~~~~~i~~l~~sp~g~~ll~~s~ 699 (834)
......+..+.+.++++.++..+.
T Consensus 212 ~~~~~~~~~~~~~~~gk~~~~~~~ 235 (620)
T COG1506 212 TPGEGSISKLAFDADGKSIALLGT 235 (620)
T ss_pred cCCCceeeeeeeCCCCCeeEEecc
Confidence 555566888889999886655544
No 479
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.67 E-value=25 Score=38.87 Aligned_cols=144 Identities=14% Similarity=0.176 Sum_probs=86.8
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCe------EEEEecCCCC---cee-----eeeccCCC--------CeEEEEEccCCCc
Q 003279 594 TQWITDVRFSPSLSRLATSSADRT------VRVWDTENPD---YSL-----RTFTGHST--------TVMSLDFHPSKED 651 (834)
Q Consensus 594 ~~~I~~l~fspdg~~Latgs~Dg~------I~IWDl~s~~---~~i-----~~~~~h~~--------~V~sl~fspdg~~ 651 (834)
-+.++.|.+.+++..+++.+.+|. +..+++.... ..+ ..+....+ ...+|++.+++.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~- 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS- 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC-
Confidence 355778888866666777777777 6666554310 001 11111111 445788855554
Q ss_pred EEEEEeCC------CcEEEEECCCCceeeEee----------------cCCCeeEEEEecCCCEEEEEEcC-----C---
Q 003279 652 LLCSCDNN------SEIRYWSINNGSCAGVFK----------------CQSGATQMRFQPRLGRILAAAIE-----N--- 701 (834)
Q Consensus 652 llasgs~D------g~I~lwDl~s~~~i~~~~----------------~~~~i~~l~~sp~g~~ll~~s~d-----g--- 701 (834)
++++.-.+ ..|+.++.. |+.+..+. .+.+...++++|++..|+++... +
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 66566556 678888876 65544432 24457899999999977777642 2
Q ss_pred --------eEEEEECCC-Ce----EEEEEeC-----CCCCEEEEEEcCCCCEEEEE
Q 003279 702 --------YISILDVET-QV----CRLKLQG-----HKNQVHSVCWNTSGEYLASV 739 (834)
Q Consensus 702 --------~I~iwDl~t-~~----~~~~l~~-----h~~~I~sl~~spdg~~Lasg 739 (834)
.|..||..+ +. ..+.+.. ....|..+.+.+++++|+.-
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 244566654 21 2233332 35678899999999988763
No 480
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=91.53 E-value=30 Score=39.56 Aligned_cols=268 Identities=10% Similarity=0.092 Sum_probs=133.2
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEc---C-CC-CEEEEEeCCCcEE
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS---P-DG-KLLATGGHDKKAV 577 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fS---p-dg-~~Lasgs~Dg~I~ 577 (834)
...+..||.++.+++|.......... .-+. .. .-..+|..+..- + .. ..||+ -.-..+.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~--~lll----------E~---~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~ 100 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPE--DLLL----------ET---QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLS 100 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCc--cEEE----------EE---ecCCcEEEEEeccccCCCCcceEEE-ecCCEEE
Confidence 35778899999999997744321110 0000 01 123456655542 2 22 23443 5567788
Q ss_pred EEeCCC--Ce-------EEEEeccCC--CCeEEEEECC----C-CCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeE
Q 003279 578 LWCTES--FT-------VKSTLEEHT--QWITDVRFSP----S-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM 641 (834)
Q Consensus 578 IWd~~t--~~-------~~~~l~~h~--~~I~~l~fsp----d-g~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~ 641 (834)
||.+.. +. .+..+..|. .....+++-| . ..+|++-+.||.+.+|+-+.-. ...+...---.-
T Consensus 101 vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~--f~~~lp~~llPg 178 (418)
T PF14727_consen 101 VYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA--FSRFLPDFLLPG 178 (418)
T ss_pred EEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE--EEEEcCCCCCCc
Confidence 887621 11 112222232 2223333322 2 4678899999999999987532 222222223334
Q ss_pred EEEEccCCCcEEEEEeCCCcEEEEECCC--------------------C---ceeeEeecCCCeeEEEEec---CCCEEE
Q 003279 642 SLDFHPSKEDLLCSCDNNSEIRYWSINN--------------------G---SCAGVFKCQSGATQMRFQP---RLGRIL 695 (834)
Q Consensus 642 sl~fspdg~~llasgs~Dg~I~lwDl~s--------------------~---~~i~~~~~~~~i~~l~~sp---~g~~ll 695 (834)
.++|.+..+ .|++++.+..|..|.... + .+.+.+..+..+..+.... ....++
T Consensus 179 Pl~Y~~~tD-sfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~Iv 257 (418)
T PF14727_consen 179 PLCYCPRTD-SFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIV 257 (418)
T ss_pred CeEEeecCC-EEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEE
Confidence 566776644 555777777888876421 1 1223444455555555433 223343
Q ss_pred EEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEE-E----cCCCC----EEEEEeCCeEEEEEcCCCCCceeEEEeecCCC
Q 003279 696 AAAIENYISILDVETQVCRLKLQGHKNQVHSVC-W----NTSGE----YLASVSDELVRVWSIGSGSKGECIHELSCTGN 766 (834)
Q Consensus 696 ~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~-~----spdg~----~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~ 766 (834)
+-+ +..+.+++.. |......+ ......|++ | ..++. +++++.++.+.||.=. ..+........
T Consensus 258 vLg-er~Lf~l~~~-G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~-----~L~WsA~l~~~ 329 (418)
T PF14727_consen 258 VLG-ERSLFCLKDN-GSLRFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT-----TLVWSAQLPHV 329 (418)
T ss_pred EEe-cceEEEEcCC-CeEEEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC-----eEEEecCCCCC
Confidence 333 4566666653 44433333 222222222 2 11222 4555558999998632 22222222222
Q ss_pred c--eEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003279 767 K--FHSCVFHPTFPSLLVIGCYETLELWNMTEN 797 (834)
Q Consensus 767 ~--I~svafspdg~~L~sgs~dg~I~Iwdl~~~ 797 (834)
+ +....|..-...|++-+.+|.|.+-=+-+.
T Consensus 330 PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 330 PVALSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred CEEEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 2 222233334456777777887777655443
No 481
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=91.46 E-value=31 Score=41.82 Aligned_cols=146 Identities=12% Similarity=0.147 Sum_probs=78.6
Q ss_pred eccCCCCeEEEEECCCCCEEEEEeCCCe--EEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEE-----eCCCc-
Q 003279 590 LEEHTQWITDVRFSPSLSRLATSSADRT--VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC-----DNNSE- 661 (834)
Q Consensus 590 l~~h~~~I~~l~fspdg~~Latgs~Dg~--I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasg-----s~Dg~- 661 (834)
...+...+..+.|+|++..++..+.++. ..+|-+.... .+..+...|....|++++..+++.. ..++.
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~ 130 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGD 130 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC----ceeeeecccccceeCCCCCeEEEEecccccccCCce
Confidence 3456778899999999999998874432 3444443221 2333456677788888877666511 11222
Q ss_pred ------EEEEECCCC-ce------------eeEeecCCCeeEEEEecCCCEEEEEEcCC-------eEEEEECCCCeEEE
Q 003279 662 ------IRYWSINNG-SC------------AGVFKCQSGATQMRFQPRLGRILAAAIEN-------YISILDVETQVCRL 715 (834)
Q Consensus 662 ------I~lwDl~s~-~~------------i~~~~~~~~i~~l~~sp~g~~ll~~s~dg-------~I~iwDl~t~~~~~ 715 (834)
+.+|....+ .. .........+....+++++..++....+. ...++...++ .+.
T Consensus 131 ~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 209 (620)
T COG1506 131 HLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNG-ELE 209 (620)
T ss_pred eeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCC-ceE
Confidence 223333222 11 11111233455555666556555554433 1233333233 333
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEe
Q 003279 716 KLQGHKNQVHSVCWNTSGEYLASVS 740 (834)
Q Consensus 716 ~l~~h~~~I~sl~~spdg~~Lasgs 740 (834)
.+......+..+.|.++|+.++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~gk~~~~~~ 234 (620)
T COG1506 210 SLTPGEGSISKLAFDADGKSIALLG 234 (620)
T ss_pred EEcCCCceeeeeeeCCCCCeeEEec
Confidence 4444556688899999998555543
No 482
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=91.43 E-value=37 Score=40.45 Aligned_cols=200 Identities=13% Similarity=0.078 Sum_probs=111.4
Q ss_pred CeEEEEECCCCCEEEEEeC-----CCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC----cEEEEE
Q 003279 596 WITDVRFSPSLSRLATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWS 666 (834)
Q Consensus 596 ~I~~l~fspdg~~Latgs~-----Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg----~I~lwD 666 (834)
.+-.++.+||.+++|-+-. --++++-|+.++......+. +...+++|.+|+..++++-..++ .|....
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~---~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~ 206 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEIT---NTSGSFAWAADGKTLFYTRLDENHRPDKVWRHR 206 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhc---ccccceEEecCCCeEEEEEEcCCCCcceEEEEe
Confidence 3556788899888876532 34789999998775333332 34677899999998988877655 233333
Q ss_pred CCC--CceeeEeecCCC--eeEEEEecCCCEEEEEEcC---CeEEEEECCCCeE--EEEEeCCCCCEEEEEEcCCCCEEE
Q 003279 667 INN--GSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE---NYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLA 737 (834)
Q Consensus 667 l~s--~~~i~~~~~~~~--i~~l~~sp~g~~ll~~s~d---g~I~iwDl~t~~~--~~~l~~h~~~I~sl~~spdg~~La 737 (834)
+.+ ..-...+..... ...+.-+....+|+....+ ..+++++...... ........+--..+. ..+.+++
T Consensus 207 ~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~e--h~~d~f~ 284 (682)
T COG1770 207 LGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVE--HGGDRFY 284 (682)
T ss_pred cCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeee--ecCcEEE
Confidence 333 222223332222 3334444556677666543 5688888776432 222221112112222 1233333
Q ss_pred EE-e-CC-eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeEE
Q 003279 738 SV-S-DE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTL 800 (834)
Q Consensus 738 sg-s-Dg-~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg---~I~Iwdl~~~~~~ 800 (834)
.- . +| ..+|+..........-..+..|...+.--.|+--..+|+....++ .|++++.+++...
T Consensus 285 i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~ 353 (682)
T COG1770 285 ILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEER 353 (682)
T ss_pred EEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCcee
Confidence 33 3 55 555655443111123334555666666666766677777776655 7888988876654
No 483
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=91.28 E-value=5.7 Score=47.38 Aligned_cols=103 Identities=14% Similarity=0.247 Sum_probs=61.8
Q ss_pred eEEEEecCCCEEEEEEcCC-----eEEEEECCC---CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCC
Q 003279 683 TQMRFQPRLGRILAAAIEN-----YISILDVET---QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK 754 (834)
Q Consensus 683 ~~l~~sp~g~~ll~~s~dg-----~I~iwDl~t---~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~ 754 (834)
..+.|-|.|..+++...|| .|.++.-+. |+.-... +....+..++|+-....++.+..+.|.+|-..+-
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~-~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNy-- 326 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRV-GCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNY-- 326 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccC-CchhhhhhhhhhHHHHHHHHhhcceEEEEEccce--
Confidence 3488999999999988665 344444321 2211111 1334566788887777777777889999987654
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003279 755 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 789 (834)
Q Consensus 755 ~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I 789 (834)
.........-..+.-+.|+|....-+.....+.|
T Consensus 327 -hWYLK~e~~ip~~s~vkwhpe~~nTl~f~d~~~I 360 (1243)
T COG5290 327 -HWYLKVERQIPGISYVKWHPEEKNTLLFRDGERI 360 (1243)
T ss_pred -EEEEEEeecCCCcceeeeccccCcEEEEecCCeE
Confidence 3333333344556677888876544433333333
No 484
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.17 E-value=2.2 Score=48.32 Aligned_cols=143 Identities=13% Similarity=0.142 Sum_probs=91.0
Q ss_pred CCCEEE-EEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCC-------cEEEEEeCCCcEEEEECCC-CceeeE
Q 003279 605 SLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-------DLLCSCDNNSEIRYWSINN-GSCAGV 675 (834)
Q Consensus 605 dg~~La-tgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~-------~llasgs~Dg~I~lwDl~s-~~~i~~ 675 (834)
+..+|+ .++....++-.|++.++. +..+.-|... -+.|.|..+ .-| +|-.+..|.-.|.+- |..+..
T Consensus 478 dssli~~dg~~~~kLykmDIErGkv-veeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKV-VEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeeccccee-eeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCceee
Confidence 444443 444556677778876654 6666656554 456666432 123 344466666666653 322222
Q ss_pred eecCCCeeEEEE----ecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003279 676 FKCQSGATQMRF----QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGS 751 (834)
Q Consensus 676 ~~~~~~i~~l~~----sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s 751 (834)
.....-++.-.| ....+++++++..|.|++||--.......+.+....|..|..+.+|+++++.+...+.+.|++-
T Consensus 554 ~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~i 633 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVPI 633 (776)
T ss_pred eeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEeccc
Confidence 222122222222 2346899999999999999976555555666777889999999999999998888899998753
No 485
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.14 E-value=34 Score=39.52 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=37.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE--EEEec-----cCCCCeEEEEECCCC
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLE-----EHTQWITDVRFSPSL 606 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~--~~~l~-----~h~~~I~~l~fspdg 606 (834)
-..-+.|+|.|||++|++--..|.|++++..++.. +..+. ...+....|+|+|+-
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 34467899999998777655469999998655432 22111 135668899999874
No 486
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=91.10 E-value=17 Score=40.99 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=20.1
Q ss_pred EEEEECCCCeEEEeccCCC-CeEEEEEeCCCCEEEEEecC
Q 003279 789 LELWNMTENKTLTLSAHDK-LVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 789 I~Iwdl~~~~~~~l~~h~~-~V~~lafspdg~~LaSgs~D 827 (834)
+.+||..+.+...+..-.. .-...+..-++++++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 5678888766542221111 11122334457788888753
No 487
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.05 E-value=28 Score=38.39 Aligned_cols=143 Identities=12% Similarity=0.166 Sum_probs=82.2
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCc------EEEEECCC--C--ceee---E--eecC-C--------CeeEEEEecCCCE
Q 003279 638 TTVMSLDFHPSKEDLLCSCDNNSE------IRYWSINN--G--SCAG---V--FKCQ-S--------GATQMRFQPRLGR 693 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasgs~Dg~------I~lwDl~s--~--~~i~---~--~~~~-~--------~i~~l~~sp~g~~ 693 (834)
+.+..|.+.+++..++ +.+++|. +..+++.. + ..+. . +... + ....+++.+++.+
T Consensus 20 GGlSgl~~~~~~~~~~-avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFY-AVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeCCCCEEE-EEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 5577888886555444 4455666 55555543 1 1111 1 1111 1 3457888667666
Q ss_pred EEEEEcC------CeEEEEECCCCeEEEEEe---------------CCCCCEEEEEEcCCCCEEEEEe------CC--e-
Q 003279 694 ILAAAIE------NYISILDVETQVCRLKLQ---------------GHKNQVHSVCWNTSGEYLASVS------DE--L- 743 (834)
Q Consensus 694 ll~~s~d------g~I~iwDl~t~~~~~~l~---------------~h~~~I~sl~~spdg~~Lasgs------Dg--~- 743 (834)
+++.-.+ ..|..+|.. +.....+. ..+..+.+++++|+|+.|+++. |+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 6666666 789999977 54443331 1344678999999999665543 22 1
Q ss_pred ------EEEEEcCCCC----CceeEEEeec-----CCCceEEEEEeCCCCEEEE
Q 003279 744 ------VRVWSIGSGS----KGECIHELSC-----TGNKFHSCVFHPTFPSLLV 782 (834)
Q Consensus 744 ------I~IwDl~s~~----~~~~i~~~~~-----~~~~I~svafspdg~~L~s 782 (834)
++|+.+.... .......+.. ....+..+.+-+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 4555444321 1122333332 4677899999999986654
No 488
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.03 E-value=6.1 Score=47.09 Aligned_cols=170 Identities=11% Similarity=0.149 Sum_probs=83.7
Q ss_pred CcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE---EEeCCCCCEEEEEEcCCCCE
Q 003279 660 SEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL---KLQGHKNQVHSVCWNTSGEY 735 (834)
Q Consensus 660 g~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~---~l~~h~~~I~sl~~spdg~~ 735 (834)
-.|+||++. |..+..+. .+..+..+.|+.+ ..|++...+|.+++|++-...... -+......|..+.|..+|-.
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVa 141 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVA 141 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceE
Confidence 457777776 44444333 2457888999876 678889999999999986432211 01112234555555556655
Q ss_pred EEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEE-EeCCCC--EEEEEEcCCeEEEEECC--CCeEEEeccCCCCeE
Q 003279 736 LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV-FHPTFP--SLLVIGCYETLELWNMT--ENKTLTLSAHDKLVS 810 (834)
Q Consensus 736 LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sva-fspdg~--~L~sgs~dg~I~Iwdl~--~~~~~~l~~h~~~V~ 810 (834)
+.+.++..+.+.++..... .....+........+-. +.|... .++-....--..++... ......+......+.
T Consensus 142 vlt~~g~v~~i~~~~~~~~-~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ 220 (829)
T KOG2280|consen 142 VLTVSGQVILINGVEEPKL-RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVV 220 (829)
T ss_pred EEecCCcEEEEcCCCcchh-hhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEE
Confidence 5544444445544443210 11111111111111111 122111 11111100011112222 222223333346678
Q ss_pred EEEEeCCCCEEEEEecCCcEEE
Q 003279 811 SLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 811 ~lafspdg~~LaSgs~DG~I~I 832 (834)
.+..||+.++|+-=..+|.|.+
T Consensus 221 ki~VS~n~~~laLyt~~G~i~~ 242 (829)
T KOG2280|consen 221 KISVSPNRRFLALYTETGKIWV 242 (829)
T ss_pred EEEEcCCcceEEEEecCCcEEE
Confidence 8888999998888888887765
No 489
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=90.94 E-value=26 Score=37.87 Aligned_cols=194 Identities=9% Similarity=0.078 Sum_probs=108.8
Q ss_pred CeEEEEEccCCCcEEEEEeCCCcEEEEECC------CC-ceeeEeec------CCCeeEEEEecCC------------CE
Q 003279 639 TVMSLDFHPSKEDLLCSCDNNSEIRYWSIN------NG-SCAGVFKC------QSGATQMRFQPRL------------GR 693 (834)
Q Consensus 639 ~V~sl~fspdg~~llasgs~Dg~I~lwDl~------s~-~~i~~~~~------~~~i~~l~~sp~g------------~~ 693 (834)
.-+.|+++|.+. +.++....+...+||.. .. ..+-.+.. ....+.+.|+... ..
T Consensus 24 N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 457899999875 55566667889999987 11 22233331 2345666666432 23
Q ss_pred EEEEEcCCeEEEEECCCCe-----EEEEEeC-CCCCE-EEEEEcC--CCCEEEEEe--CCeEEEEEcCCCCCceeEEEee
Q 003279 694 ILAAAIENYISILDVETQV-----CRLKLQG-HKNQV-HSVCWNT--SGEYLASVS--DELVRVWSIGSGSKGECIHELS 762 (834)
Q Consensus 694 ll~~s~dg~I~iwDl~t~~-----~~~~l~~-h~~~I-~sl~~sp--dg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~ 762 (834)
++.+++||+|.-|...-.. .+..+.. ....| ..+++-. .+.+|+.+. .++|.|||-.-.... .-..+.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~-~~g~F~ 181 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP-LPGSFI 181 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc-CCCCcc
Confidence 7888999999999854321 1222221 12333 3555543 467888777 889999986533110 000000
Q ss_pred -----cCCCc-----------eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEec--cCCCCeEEEEEeC------CC
Q 003279 763 -----CTGNK-----------FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS--AHDKLVSSLAAST------VN 818 (834)
Q Consensus 763 -----~~~~~-----------I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~--~h~~~V~~lafsp------dg 818 (834)
..-.+ |+-..-.++...=+.+..-|.|-+||+...-+.++. +.-...+.|+..| .+
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg 261 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSG 261 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCC
Confidence 00001 111111222222233444568999998776555442 3445667777765 35
Q ss_pred CEEEEEecCCcEEEeC
Q 003279 819 GMVASASHDKCVKIWK 834 (834)
Q Consensus 819 ~~LaSgs~DG~I~IWd 834 (834)
.+|+---.||+|..||
T Consensus 262 ~lLVGNFGDG~InaFD 277 (336)
T TIGR03118 262 ALLVGNFGDGTINAYD 277 (336)
T ss_pred CeEEeecCCceeEEec
Confidence 5666656799999887
No 490
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.59 E-value=6.8 Score=49.78 Aligned_cols=229 Identities=13% Similarity=0.101 Sum_probs=109.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCC-CeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceee
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 631 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~-~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~ 631 (834)
.....++|+|.-.++|.++.+|.|.+|-...-+.+.....-.. .+..+.|......+.....+..+.+|.......
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~--- 112 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTG--- 112 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccce---
Confidence 3456789999999999999999999997554333322211110 122222222222233334455566665543221
Q ss_pred eeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec--CCCeeEE-EEecCCCEEEEEEcCCeEEEEEC
Q 003279 632 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQM-RFQPRLGRILAAAIENYISILDV 708 (834)
Q Consensus 632 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~--~~~i~~l-~~sp~g~~ll~~s~dg~I~iwDl 708 (834)
..+...+++....+- -.++.+ ..+.+++||..-......... ....... ...+..-.+..--.+-.-.++-+
T Consensus 113 --~~~~~~~~~~~~~~~--~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 187 (993)
T KOG1983|consen 113 --VFLKQEITSFVTDPP--PDWLIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLISL 187 (993)
T ss_pred --eecCCcceeccCCCC--cchhcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceeec
Confidence 112233444333222 112334 778888888753221111110 0000000 00000000000000000111111
Q ss_pred CCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 003279 709 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET 788 (834)
Q Consensus 709 ~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~ 788 (834)
.... ..+.-+..++.+..+......+.....+.+.+|+.... .....+..... .+..++..++++..|+.
T Consensus 188 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~v~~h~Dgs 257 (993)
T KOG1983|consen 188 PDAY--LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASK---YVQSAYLPNGQ-----LESRDGSHFVSYHTDGS 257 (993)
T ss_pred cccc--ccccccccccceeeeecCCCcceeeeeeeeeehhcccc---cchhhcccccc-----cCccCCceEEEEEecCC
Confidence 1001 12223555666666666666666666777777776544 12222221111 22788899999999999
Q ss_pred EEEEECCCCeE
Q 003279 789 LELWNMTENKT 799 (834)
Q Consensus 789 I~Iwdl~~~~~ 799 (834)
+.+||...++.
T Consensus 258 ~~fWd~s~g~~ 268 (993)
T KOG1983|consen 258 YAFWDVSSGKL 268 (993)
T ss_pred EEeeecCCCce
Confidence 99999988754
No 491
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=90.53 E-value=0.077 Score=56.51 Aligned_cols=6 Identities=50% Similarity=0.584 Sum_probs=0.0
Q ss_pred CCcchh
Q 003279 49 GGFLFE 54 (834)
Q Consensus 49 ~~fL~e 54 (834)
|.||-|
T Consensus 276 D~~L~e 281 (468)
T PF11498_consen 276 DTFLNE 281 (468)
T ss_dssp ------
T ss_pred HHHHhh
Confidence 344544
No 492
>PRK13613 lipoprotein LpqB; Provisional
Probab=90.49 E-value=43 Score=40.22 Aligned_cols=190 Identities=9% Similarity=0.036 Sum_probs=104.7
Q ss_pred CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce----eeEeecCCCeeEEEEecCCCEEEEEEc--CC--eEEEEECCC
Q 003279 639 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFKCQSGATQMRFQPRLGRILAAAI--EN--YISILDVET 710 (834)
Q Consensus 639 ~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~----i~~~~~~~~i~~l~~sp~g~~ll~~s~--dg--~I~iwDl~t 710 (834)
.+.+++.++++..+.+.......+++..+..+.. .........++.-.|..++ .+.++.. ++ .++++.- +
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~-~ 441 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQG-D 441 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEecCCCCCceEEEEEcC-C
Confidence 6788999999876665544334666665543332 1122223456677777776 4444432 12 2555543 3
Q ss_pred CeEEE-EEeCCCC-CEEEEEEcCCCCEEEEEeC----CeEEEEEcCCCCCce-eE---EEeecCCCceEEEEEeCCCCEE
Q 003279 711 QVCRL-KLQGHKN-QVHSVCWNTSGEYLASVSD----ELVRVWSIGSGSKGE-CI---HELSCTGNKFHSCVFHPTFPSL 780 (834)
Q Consensus 711 ~~~~~-~l~~h~~-~I~sl~~spdg~~LasgsD----g~I~IwDl~s~~~~~-~i---~~~~~~~~~I~svafspdg~~L 780 (834)
++... ......+ .|..+..|+||-.++.-.+ +.|+|--+....... .+ ..+......+.+++|..++..+
T Consensus 442 G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~~sL~ 521 (599)
T PRK13613 442 GEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGDSQLV 521 (599)
T ss_pred CcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcCCCEEE
Confidence 43321 1112233 7999999999987776542 566665554322221 12 1222233458999999999866
Q ss_pred EEEEc---CCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCC-EEEEEecCCcE
Q 003279 781 LVIGC---YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCV 830 (834)
Q Consensus 781 ~sgs~---dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~-~LaSgs~DG~I 830 (834)
+.+.. +..+++.++...... .....-..+..|+-..+.. .|+.+..++.|
T Consensus 522 Vlg~~~~~~~~v~~v~vdG~~~~~~~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 522 VLGREEGGVQQARYVQVDGSTPPASAPAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred EEeccCCCCcceEEEecCCcCcccccccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 65532 235666666644332 1223445566677776665 55553455544
No 493
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.45 E-value=1.5 Score=45.48 Aligned_cols=66 Identities=12% Similarity=0.145 Sum_probs=53.0
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCeEEEEE-------e-------CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003279 687 FQPRLGRILAAAIENYISILDVETQVCRLKL-------Q-------GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 752 (834)
Q Consensus 687 ~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l-------~-------~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~ 752 (834)
+...+.++++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-|++-++|..+.|+..-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4456789999999999999999998765432 1 2446788899999999888888888999987654
No 494
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.43 E-value=0.032 Score=62.29 Aligned_cols=141 Identities=16% Similarity=0.288 Sum_probs=99.6
Q ss_pred eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEE
Q 003279 682 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIH 759 (834)
Q Consensus 682 i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~ 759 (834)
.....|.+.+..+++++.+..+..||-.... ..... .++....++|+.++..++... .+.+++||+.+... .
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~-~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt----q 110 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQV-ILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT----Q 110 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcce-ecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH----H
Confidence 4456777888889999999999999865432 22222 345566889998888766654 78999999987521 1
Q ss_pred EeecC-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEecc-CCCCeEEEEEeCCCCEEEEEecCCc
Q 003279 760 ELSCT-GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-HDKLVSSLAASTVNGMVASASHDKC 829 (834)
Q Consensus 760 ~~~~~-~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~-h~~~V~~lafspdg~~LaSgs~DG~ 829 (834)
.+... ...-.-+.|++.+..++.+...+.+.||+..+.+.+...+ |...+++++|.+.+ +.+.++.|..
T Consensus 111 qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~ 181 (615)
T KOG2247|consen 111 QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNT 181 (615)
T ss_pred HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHH
Confidence 11111 1111226899999999999999999999998877775555 99999999999876 4555555543
No 495
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=90.06 E-value=37 Score=38.17 Aligned_cols=181 Identities=12% Similarity=0.173 Sum_probs=103.0
Q ss_pred CcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEec----CCCE--EEEEEc-C---CeEEEEECC--CCeEEEEE
Q 003279 650 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP----RLGR--ILAAAI-E---NYISILDVE--TQVCRLKL 717 (834)
Q Consensus 650 ~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp----~g~~--ll~~s~-d---g~I~iwDl~--t~~~~~~l 717 (834)
+.+++....++-+.+||+. |+.+..+.. +..+.+.+-. .++. |++++. + ..|++|.+. ++. +..+
T Consensus 68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~~-Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~v 144 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLD-GKELQSLPV-GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTDV 144 (381)
T ss_dssp G-EEEEEETTTEEEEEETT-S-EEEEE-S-S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE-
T ss_pred cceEEEEeCCCCEEEEcCC-CcEEEeecC-CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceEc
Confidence 3466677888899999998 555555543 4444443322 3333 344443 2 468888664 443 2232
Q ss_pred eC-------CCCCEEEEEEc--C-CCCEEEEE-e-CCeEEEEEcCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEE
Q 003279 718 QG-------HKNQVHSVCWN--T-SGEYLASV-S-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLL 781 (834)
Q Consensus 718 ~~-------h~~~I~sl~~s--p-dg~~Lasg-s-Dg~I~IwDl~s~~~----~~~i~~~~~~~~~I~svafspdg~~L~ 781 (834)
.. ....++.+|+. + +|.+.+.. . +|.+..|.+..... .+.++++.. ...+..|+.......|+
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLY 223 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEE
Confidence 21 12346777773 3 46655444 4 88888888753222 245666665 45899999999999999
Q ss_pred EEEcCCeEEEEECCCC-----eEEEec---cCCCCeEEEEEeC--CCC-EEEE-EecCCcEEEeC
Q 003279 782 VIGCYETLELWNMTEN-----KTLTLS---AHDKLVSSLAAST--VNG-MVAS-ASHDKCVKIWK 834 (834)
Q Consensus 782 sgs~dg~I~Iwdl~~~-----~~~~l~---~h~~~V~~lafsp--dg~-~LaS-gs~DG~I~IWd 834 (834)
++-.+.-|+-|+.+.. ..+... .....|..|++-. +++ ||+. .-.+++..|||
T Consensus 224 vgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp EEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred EecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence 9999989999988622 222221 2345677777743 443 5544 44566777774
No 496
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=89.70 E-value=0.23 Score=60.44 Aligned_cols=89 Identities=24% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH----------------------HHHhhhccccCCCCCCCCCC----
Q 003279 86 AREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQ----------------------QQQQQRRDSTQHLNDTGDDL---- 139 (834)
Q Consensus 86 ~~~qqqqqqqq~q~~qq~qq~q~qq~~~qqq~qq----------------------qqq~q~~~~~~~~~~~~~~~---- 139 (834)
.++|||||.|..|++|.-|||||.+||+|++=|| |+|||+--.+++.-|...+-
T Consensus 1855 ~q~~qqq~iq~lq~~q~lqqqqq~~qq~~~~~~q~~sq~~q~p~~~~s~~~~~~~~~~~q~~~~~~~q~~g~~~qgs~~y 1934 (2131)
T KOG4369|consen 1855 IQQQQQQQIQHLQQQQALQQQQQRIQQFQQQYQQHQSQSSQQPSDLMSSKFSMLQSQQQQQQLYNQMQSLGQDGQGSNLY 1934 (2131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCCCCcccccccchhccCcccCCccccccccccccccccccc
Q ss_pred -----------------CCchhhHHHHHHHHHhhhcCCCCCCcccccccccc
Q 003279 140 -----------------RPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPR 174 (834)
Q Consensus 140 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (834)
.-++++.+|..-|-.-..+.|...-...-++.|+|
T Consensus 1935 ~~~~~~~l~h~e~~~g~~~~~~s~~a~s~~~~~~~~~~~~lg~~~~~s~~~~ 1986 (2131)
T KOG4369|consen 1935 NHLAAQLLTHQESSTGAPGPTSSQLANSYYPSPSYTDASVLGQISMPSLSQR 1986 (2131)
T ss_pred hhHHHHHHHhhhccCCCCCCCCCccccCCCCCccccccccccccccchhhhc
No 497
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.68 E-value=25 Score=36.21 Aligned_cols=102 Identities=7% Similarity=0.146 Sum_probs=66.4
Q ss_pred CcEEEEEeCCCcEEEEECC--CCceeeEeecCCCeeEEEEecCCCEEEEEEcCC------eEEEE-ECCC----CeEEE-
Q 003279 650 EDLLCSCDNNSEIRYWSIN--NGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN------YISIL-DVET----QVCRL- 715 (834)
Q Consensus 650 ~~llasgs~Dg~I~lwDl~--s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg------~I~iw-Dl~t----~~~~~- 715 (834)
+.+|++ ...+.|.+|++. .......|..-+.|..+.++..|+++++--.+. .+++| +.+. ..++.
T Consensus 29 d~Lfva-~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVA-ASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEE-cCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 334443 557889999988 445667777788999999999999999987642 45554 2221 11111
Q ss_pred EEeCC---------------------CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003279 716 KLQGH---------------------KNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 752 (834)
Q Consensus 716 ~l~~h---------------------~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~ 752 (834)
.+-|| ...+.+++..|-.--|+.|+++.+.+|.+...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEE
Confidence 22221 23556777777544566677888999987653
No 498
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=89.63 E-value=30 Score=39.58 Aligned_cols=30 Identities=13% Similarity=0.373 Sum_probs=19.6
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 767 KFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 767 ~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
.|..++..+..+.+++...++.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 366666666667777777777777777753
No 499
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=89.47 E-value=56 Score=39.34 Aligned_cols=239 Identities=10% Similarity=0.088 Sum_probs=0.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeEEEEec-cCCCCeEEEEECCCCC---EEEEE-eCCCeEEEEecCCC--
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLE-EHTQWITDVRFSPSLS---RLATS-SADRTVRVWDTENP-- 626 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~-t~~~~~~l~-~h~~~I~~l~fspdg~---~Latg-s~Dg~I~IWDl~s~-- 626 (834)
+.+..++|+...+-.|=....|.-|=+. +.+.+..+. ..+..|.||....... +.++| ...+.-++-.+..+
T Consensus 30 ~vs~~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~ 109 (670)
T PF10395_consen 30 QVSDDFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVG 109 (670)
T ss_pred eeecccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCc
Q ss_pred ----------CceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC----------CCCceeeEeecCCCeeEEE
Q 003279 627 ----------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI----------NNGSCAGVFKCQSGATQMR 686 (834)
Q Consensus 627 ----------~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl----------~s~~~i~~~~~~~~i~~l~ 686 (834)
......+.- ...|..|.|..++. .+++.-.+|.|.+||. -..........+.-|....
T Consensus 110 ~~~~~~~~~e~~~~~~~kl-~~kvv~Ik~~~~~~-~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~ 187 (670)
T PF10395_consen 110 STEDGTVNSETTNEFELKL-DDKVVGIKFSSDGK-IIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFE 187 (670)
T ss_pred cccccccCccccceEEEEc-ccceEEEEEecCCC-EEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccc
Q ss_pred EecCCCEEEEEEc-CC---eEEEEEC-CCCeEEEEEe---CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeE
Q 003279 687 FQPRLGRILAAAI-EN---YISILDV-ETQVCRLKLQ---GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECI 758 (834)
Q Consensus 687 ~sp~g~~ll~~s~-dg---~I~iwDl-~t~~~~~~l~---~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i 758 (834)
......++++.+. ++ ..+++.+ .....+..+. .+........|.-....|+.-.+++|.+|++........+
T Consensus 188 ~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l~~~~i~~ysip~f~~~~tI 267 (670)
T PF10395_consen 188 LENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQLSKKTISSYSIPNFQIQKTI 267 (670)
T ss_pred cccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEEeCCEEEEEEcCCceEEEEE
Q ss_pred EEeecCCCc-eEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003279 759 HELSCTGNK-FHSCVFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 759 ~~~~~~~~~-I~svafspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
..-..-... -..+.+.|-...=+.-+.++.|++.|+.
T Consensus 268 ~l~~ii~~~~~~~vSl~~~s~nRvLLs~~nkIyLld~~ 305 (670)
T PF10395_consen 268 SLPSIIDKESDDLVSLKPPSPNRVLLSVNNKIYLLDLK 305 (670)
T ss_pred EechhhccccccceEeecCCCCeEEEEcCCEEEEEeeh
No 500
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.79 E-value=8.8 Score=46.35 Aligned_cols=142 Identities=13% Similarity=0.009 Sum_probs=0.0
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEe------------------------CCCCCEEEEEEcCCCCEEEEEe-CCeEEE
Q 003279 692 GRILAAAIENYISILDVETQVCRLKLQ------------------------GHKNQVHSVCWNTSGEYLASVS-DELVRV 746 (834)
Q Consensus 692 ~~ll~~s~dg~I~iwDl~t~~~~~~l~------------------------~h~~~I~sl~~spdg~~Lasgs-Dg~I~I 746 (834)
..++..+..+.|.||+.+.-....... .|.-...-+..--+..+|++|. ||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Q ss_pred EEc-----------------CCCCCceeEEEeecCCCceEEEEEe--CCCCEEEEEEcCCeEEEEECCCCeEE----Eec
Q 003279 747 WSI-----------------GSGSKGECIHELSCTGNKFHSCVFH--PTFPSLLVIGCYETLELWNMTENKTL----TLS 803 (834)
Q Consensus 747 wDl-----------------~s~~~~~~i~~~~~~~~~I~svafs--pdg~~L~sgs~dg~I~Iwdl~~~~~~----~l~ 803 (834)
|.+ ......++...+.... ..+.++++ ...++||+++....|.||-....... .-.
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~-SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGA-SAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEeecCC-ceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Q ss_pred cCCCCeEEEEEeCCC------CEEEEEecCCcEEEeC
Q 003279 804 AHDKLVSSLAASTVN------GMVASASHDKCVKIWK 834 (834)
Q Consensus 804 ~h~~~V~~lafspdg------~~LaSgs~DG~I~IWd 834 (834)
.|...|.+|+|-++. ..|++++-.|.|.+|+
T Consensus 208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Done!