Query 003279
Match_columns 834
No_of_seqs 1231 out of 2969
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 19:45:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003279.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003279hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1got_B GT-beta; complex (GTP-b 100.0 1.1E-41 3.9E-46 374.6 46.6 288 542-834 45-340 (340)
2 1vyh_C Platelet-activating fac 100.0 3.7E-42 1.2E-46 389.0 42.6 284 546-834 102-408 (410)
3 3ow8_A WD repeat-containing pr 100.0 4.8E-41 1.7E-45 367.3 43.6 286 544-834 24-318 (321)
4 2pbi_B Guanine nucleotide-bind 100.0 3.7E-40 1.3E-44 365.2 46.2 289 542-834 54-354 (354)
5 3iz6_a 40S ribosomal protein R 100.0 3.8E-41 1.3E-45 376.4 34.7 291 541-834 55-372 (380)
6 1nr0_A Actin interacting prote 100.0 2.4E-39 8.3E-44 385.0 47.1 329 499-834 67-564 (611)
7 2ynn_A Coatomer subunit beta'; 100.0 2.2E-39 7.4E-44 350.7 42.1 284 543-831 4-297 (304)
8 3frx_A Guanine nucleotide-bind 100.0 4.6E-39 1.6E-43 350.8 44.6 289 539-834 4-314 (319)
9 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.7E-39 1.6E-43 354.6 43.2 292 542-834 5-332 (345)
10 1nr0_A Actin interacting prote 100.0 3.1E-39 1.1E-43 384.0 44.8 319 478-834 149-608 (611)
11 1erj_A Transcriptional repress 100.0 7.1E-39 2.4E-43 359.7 43.5 282 550-834 62-386 (393)
12 4ery_A WD repeat-containing pr 100.0 3.8E-38 1.3E-42 340.6 45.8 288 542-834 13-309 (312)
13 2xzm_R RACK1; ribosome, transl 100.0 2.7E-38 9.4E-43 347.8 43.9 287 541-834 10-337 (343)
14 2ymu_A WD-40 repeat protein; u 100.0 1.5E-37 5E-42 364.2 50.2 305 500-834 271-577 (577)
15 4gqb_B Methylosome protein 50; 100.0 2.1E-38 7.3E-43 350.3 36.9 279 550-834 28-328 (344)
16 2hes_X YDR267CP; beta-propelle 100.0 9E-38 3.1E-42 342.2 41.6 289 542-834 4-325 (330)
17 4g56_B MGC81050 protein; prote 100.0 1.2E-38 4.2E-43 353.5 34.9 281 549-834 39-340 (357)
18 3zwl_B Eukaryotic translation 100.0 4.5E-37 1.6E-41 336.2 44.2 284 544-834 24-343 (369)
19 2ymu_A WD-40 repeat protein; u 100.0 1.6E-36 5.6E-41 355.2 50.1 303 502-834 232-536 (577)
20 3ow8_A WD repeat-containing pr 100.0 6.1E-37 2.1E-41 334.8 43.3 271 503-795 48-320 (321)
21 1gxr_A ESG1, transducin-like e 100.0 8.6E-37 2.9E-41 330.2 43.7 279 549-834 48-334 (337)
22 1vyh_C Platelet-activating fac 100.0 3.8E-37 1.3E-41 347.9 42.1 280 477-795 109-410 (410)
23 1r5m_A SIR4-interacting protei 100.0 4.3E-37 1.5E-41 343.2 41.6 309 505-834 60-422 (425)
24 4aow_A Guanine nucleotide-bind 100.0 2.1E-36 7.3E-41 328.3 45.6 287 541-834 27-334 (340)
25 2pm9_A Protein WEB1, protein t 100.0 3E-38 1E-42 353.3 28.8 311 504-834 26-411 (416)
26 1sq9_A Antiviral protein SKI8; 100.0 8.2E-37 2.8E-41 339.8 38.8 287 542-834 6-392 (397)
27 2ynn_A Coatomer subunit beta'; 100.0 5.3E-36 1.8E-40 324.1 42.5 271 504-796 26-302 (304)
28 4gqb_B Methylosome protein 50; 100.0 8.3E-37 2.8E-41 337.6 36.0 244 550-799 80-334 (344)
29 1k8k_C P40, ARP2/3 complex 41 100.0 2.4E-36 8.3E-41 332.2 36.8 282 548-834 4-358 (372)
30 3dm0_A Maltose-binding peripla 100.0 1E-35 3.5E-40 358.6 43.3 285 543-834 373-690 (694)
31 3vl1_A 26S proteasome regulato 100.0 5.1E-36 1.7E-40 336.4 37.2 310 500-834 65-416 (420)
32 1got_B GT-beta; complex (GTP-b 100.0 4.2E-35 1.5E-39 322.1 43.1 277 477-793 56-340 (340)
33 3frx_A Guanine nucleotide-bind 100.0 5E-35 1.7E-39 318.8 42.4 275 503-797 30-318 (319)
34 3odt_A Protein DOA1; ubiquitin 100.0 5.9E-35 2E-39 312.7 42.3 280 541-834 7-293 (313)
35 3ei3_B DNA damage-binding prot 100.0 1.9E-35 6.6E-40 328.5 37.6 285 542-834 63-379 (383)
36 3i2n_A WD repeat-containing pr 100.0 1E-35 3.6E-40 324.8 34.4 287 546-834 12-350 (357)
37 3k26_A Polycomb protein EED; W 100.0 4.4E-36 1.5E-40 328.5 30.4 286 546-834 12-363 (366)
38 1r5m_A SIR4-interacting protei 100.0 4.3E-35 1.5E-39 327.0 37.8 278 549-834 42-358 (425)
39 4g56_B MGC81050 protein; prote 100.0 2.1E-35 7.1E-40 327.6 32.5 284 478-797 44-344 (357)
40 2pbi_B Guanine nucleotide-bind 100.0 4E-34 1.4E-38 316.7 42.2 279 477-793 65-354 (354)
41 2xzm_R RACK1; ribosome, transl 100.0 2.4E-34 8.3E-39 316.3 40.1 279 502-797 38-341 (343)
42 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.1E-34 1.4E-38 315.1 41.4 280 504-800 29-339 (345)
43 3dwl_C Actin-related protein 2 100.0 2.4E-36 8.3E-41 334.3 23.0 285 547-834 6-376 (377)
44 4ery_A WD repeat-containing pr 100.0 1.6E-33 5.3E-38 304.3 44.3 268 504-795 36-311 (312)
45 3gre_A Serine/threonine-protei 100.0 4.6E-35 1.6E-39 331.4 32.1 284 544-834 54-437 (437)
46 3sfz_A APAF-1, apoptotic pepti 100.0 3.4E-34 1.2E-38 366.6 43.6 310 504-834 628-1031(1249)
47 1erj_A Transcriptional repress 100.0 1.2E-33 4E-38 317.2 42.6 288 503-797 76-390 (393)
48 3v7d_B Cell division control p 100.0 3.5E-33 1.2E-37 318.4 47.2 299 504-833 133-459 (464)
49 2oaj_A Protein SNI1; WD40 repe 100.0 8.1E-34 2.8E-38 351.9 45.1 200 478-715 19-247 (902)
50 2pm9_A Protein WEB1, protein t 100.0 1.8E-35 6.2E-40 330.7 27.3 279 553-834 13-334 (416)
51 1gxr_A ESG1, transducin-like e 100.0 3.5E-34 1.2E-38 309.6 36.0 278 551-834 8-293 (337)
52 2j04_B YDR362CP, TAU91; beta p 100.0 1.9E-35 6.7E-40 344.6 27.7 311 503-834 173-514 (524)
53 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-33 4.2E-38 344.8 44.8 319 478-834 15-383 (814)
54 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.3E-33 1.1E-37 317.7 45.0 296 503-834 129-439 (445)
55 3v7d_B Cell division control p 100.0 2.3E-33 7.8E-38 320.0 42.4 280 543-834 112-418 (464)
56 1pgu_A Actin interacting prote 100.0 2.2E-33 7.4E-38 330.0 43.4 302 505-834 175-611 (615)
57 3iz6_a 40S ribosomal protein R 100.0 1.5E-34 5.2E-39 322.9 31.7 284 477-798 67-377 (380)
58 1pgu_A Actin interacting prote 100.0 1.8E-33 6.2E-38 330.6 42.5 303 504-834 31-363 (615)
59 4aow_A Guanine nucleotide-bind 100.0 8.3E-33 2.8E-37 300.0 43.9 278 503-798 51-339 (340)
60 2hes_X YDR267CP; beta-propelle 100.0 1.4E-33 4.9E-38 308.8 37.9 273 505-796 26-328 (330)
61 4e54_B DNA damage-binding prot 100.0 6.5E-35 2.2E-39 331.7 27.8 283 546-834 113-427 (435)
62 3mmy_A MRNA export factor; mRN 100.0 8.6E-34 2.9E-38 310.1 35.4 288 541-833 28-342 (368)
63 4h5i_A Guanine nucleotide-exch 100.0 2.6E-34 8.9E-39 319.8 31.7 279 553-834 15-340 (365)
64 1yfq_A Cell cycle arrest prote 100.0 3.6E-34 1.2E-38 311.4 32.1 277 545-829 4-315 (342)
65 2pm7_B Protein transport prote 100.0 1.5E-33 5.3E-38 303.7 35.8 251 545-795 2-284 (297)
66 3dw8_B Serine/threonine-protei 100.0 6.1E-34 2.1E-38 321.8 34.1 278 550-833 26-442 (447)
67 3f3f_A Nucleoporin SEH1; struc 100.0 6.8E-34 2.3E-38 306.9 32.7 285 546-834 5-334 (351)
68 4aez_A CDC20, WD repeat-contai 100.0 4.1E-33 1.4E-37 313.0 39.9 278 547-834 86-377 (401)
69 4a11_B DNA excision repair pro 100.0 4.3E-33 1.5E-37 309.4 37.0 289 544-834 35-362 (408)
70 3vl1_A 26S proteasome regulato 100.0 3.9E-34 1.3E-38 321.0 28.0 274 554-834 58-362 (420)
71 3dm0_A Maltose-binding peripla 100.0 1.3E-32 4.3E-37 331.7 43.1 275 503-796 395-693 (694)
72 3mkq_A Coatomer beta'-subunit; 100.0 3.3E-33 1.1E-37 341.0 38.4 286 543-834 4-299 (814)
73 4gga_A P55CDC, cell division c 100.0 2.1E-32 7.2E-37 309.3 41.9 270 555-834 108-392 (420)
74 3sfz_A APAF-1, apoptotic pepti 100.0 9.9E-33 3.4E-37 353.1 42.9 285 546-834 609-910 (1249)
75 4ggc_A P55CDC, cell division c 100.0 4.6E-32 1.6E-36 291.3 40.7 270 555-834 28-312 (318)
76 3zwl_B Eukaryotic translation 100.0 1.3E-31 4.5E-36 292.8 44.2 270 504-798 45-348 (369)
77 1sq9_A Antiviral protein SKI8; 100.0 6.4E-33 2.2E-37 308.4 34.1 276 504-798 27-397 (397)
78 3i2n_A WD repeat-containing pr 100.0 6.3E-33 2.1E-37 302.7 32.2 277 504-799 32-356 (357)
79 1p22_A F-BOX/WD-repeat protein 100.0 1.5E-32 5.3E-37 311.7 36.5 271 545-834 126-411 (435)
80 2oaj_A Protein SNI1; WD40 repe 100.0 1E-32 3.5E-37 342.0 37.8 326 499-834 106-658 (902)
81 1k8k_C P40, ARP2/3 complex 41 100.0 3.1E-32 1.1E-36 299.3 36.8 277 504-798 21-363 (372)
82 3bg1_A Protein SEC13 homolog; 100.0 4.9E-33 1.7E-37 302.7 28.8 250 546-795 7-292 (316)
83 4aez_A CDC20, WD repeat-contai 100.0 8.1E-32 2.8E-36 302.4 38.7 273 504-800 104-384 (401)
84 3k26_A Polycomb protein EED; W 100.0 2.9E-32 9.8E-37 298.1 33.7 289 477-796 19-366 (366)
85 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.8E-31 6.1E-36 303.4 41.4 273 544-834 110-388 (445)
86 2pm7_B Protein transport prote 100.0 4E-32 1.4E-36 292.5 33.9 247 588-834 3-282 (297)
87 3odt_A Protein DOA1; ubiquitin 100.0 2.4E-31 8.2E-36 284.6 38.0 267 503-801 29-301 (313)
88 4gga_A P55CDC, cell division c 100.0 4.8E-31 1.6E-35 298.2 41.7 272 504-800 117-399 (420)
89 3ei3_B DNA damage-binding prot 100.0 1.4E-31 4.8E-36 297.3 35.3 267 504-796 87-382 (383)
90 3jrp_A Fusion protein of prote 100.0 1.2E-31 4.1E-36 294.7 33.9 252 545-796 4-287 (379)
91 2aq5_A Coronin-1A; WD40 repeat 100.0 5.6E-32 1.9E-36 303.4 30.5 279 553-834 35-339 (402)
92 3dwl_C Actin-related protein 2 100.0 1.1E-32 3.7E-37 305.0 23.9 275 502-794 22-377 (377)
93 4a11_B DNA excision repair pro 100.0 1.6E-30 5.3E-35 288.8 40.6 318 504-834 57-402 (408)
94 4e54_B DNA damage-binding prot 100.0 1.8E-31 6.3E-36 303.2 31.8 285 478-799 121-433 (435)
95 3bg1_A Protein SEC13 homolog; 100.0 2.7E-32 9.2E-37 296.8 23.4 246 589-834 8-290 (316)
96 3bws_A Protein LP49; two-domai 100.0 1.5E-30 5.1E-35 293.4 37.9 285 543-834 114-429 (433)
97 3jrp_A Fusion protein of prote 100.0 7.6E-31 2.6E-35 288.2 32.3 250 585-834 2-284 (379)
98 4ggc_A P55CDC, cell division c 100.0 1.5E-29 5.2E-34 271.6 39.9 270 504-798 37-317 (318)
99 3dw8_B Serine/threonine-protei 100.0 2.7E-30 9.4E-35 291.8 33.1 289 477-795 29-445 (447)
100 1p22_A F-BOX/WD-repeat protein 100.0 5.1E-30 1.8E-34 290.9 34.8 281 503-815 143-433 (435)
101 3gre_A Serine/threonine-protei 100.0 3.8E-31 1.3E-35 299.2 25.2 264 559-834 34-356 (437)
102 3vu4_A KMHSV2; beta-propeller 100.0 5.9E-30 2E-34 283.3 33.5 274 545-834 12-333 (355)
103 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2E-29 6.9E-34 287.5 37.9 272 553-833 5-387 (450)
104 2aq5_A Coronin-1A; WD40 repeat 100.0 2.6E-30 8.9E-35 289.8 29.1 277 504-800 48-346 (402)
105 4h5i_A Guanine nucleotide-exch 100.0 1.3E-29 4.3E-34 282.0 33.5 287 478-797 16-344 (365)
106 3lrv_A PRE-mRNA-splicing facto 100.0 1.1E-30 3.7E-35 286.9 23.1 265 559-833 43-329 (343)
107 2xyi_A Probable histone-bindin 100.0 1.9E-29 6.5E-34 286.3 33.1 245 588-834 122-407 (430)
108 1yfq_A Cell cycle arrest prote 100.0 3.9E-29 1.3E-33 271.6 33.9 273 478-793 13-321 (342)
109 1l0q_A Surface layer protein; 100.0 6.4E-28 2.2E-32 268.0 43.0 275 504-806 3-286 (391)
110 2j04_B YDR362CP, TAU91; beta p 100.0 9.1E-31 3.1E-35 305.2 20.7 256 561-821 170-458 (524)
111 1l0q_A Surface layer protein; 100.0 2.9E-28 9.7E-33 270.8 39.2 262 565-834 3-272 (391)
112 2j04_A TAU60, YPL007P, hypothe 100.0 4.6E-30 1.6E-34 295.0 24.6 262 550-834 13-294 (588)
113 2xyi_A Probable histone-bindin 100.0 3.4E-29 1.2E-33 284.2 31.0 252 546-797 122-411 (430)
114 3f3f_A Nucleoporin SEH1; struc 100.0 2.1E-28 7.3E-33 263.7 34.2 290 477-800 12-341 (351)
115 3mmy_A MRNA export factor; mRN 100.0 6.1E-28 2.1E-32 263.5 37.1 288 475-800 38-353 (368)
116 3jro_A Fusion protein of prote 100.0 2.2E-29 7.4E-34 306.7 28.0 252 545-796 2-285 (753)
117 2j04_A TAU60, YPL007P, hypothe 100.0 1.4E-29 4.6E-34 291.2 23.9 245 550-826 83-350 (588)
118 4gq1_A NUP37; propeller, trans 100.0 1.1E-28 3.9E-33 276.8 25.0 261 549-830 86-383 (393)
119 3jro_A Fusion protein of prote 100.0 1.9E-28 6.6E-33 298.4 26.4 247 588-834 3-282 (753)
120 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.4E-26 1.2E-30 260.8 41.1 245 548-795 98-390 (450)
121 1nir_A Nitrite reductase; hemo 100.0 8.5E-26 2.9E-30 264.7 39.2 307 504-834 150-511 (543)
122 3vu4_A KMHSV2; beta-propeller 100.0 8.4E-27 2.9E-31 257.9 28.8 245 578-834 3-268 (355)
123 3bws_A Protein LP49; two-domai 100.0 2.3E-25 7.9E-30 250.9 38.6 274 502-796 133-432 (433)
124 3lrv_A PRE-mRNA-splicing facto 99.9 3.3E-26 1.1E-30 251.1 26.2 262 501-796 46-333 (343)
125 2w18_A PALB2, fancn, partner a 99.9 7.1E-25 2.4E-29 238.0 34.5 285 540-834 23-354 (356)
126 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.5E-25 8.6E-30 251.8 32.0 265 546-819 111-410 (415)
127 4gq1_A NUP37; propeller, trans 99.9 1.3E-25 4.4E-30 251.9 22.7 235 502-751 100-389 (393)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 5.1E-25 1.7E-29 249.3 26.3 273 553-834 63-384 (415)
129 3vgz_A Uncharacterized protein 99.9 4.8E-23 1.6E-27 224.5 38.1 268 553-827 41-334 (353)
130 3u4y_A Uncharacterized protein 99.9 3.8E-23 1.3E-27 224.1 35.4 274 558-834 3-301 (331)
131 2w18_A PALB2, fancn, partner a 99.9 1.5E-23 5.2E-28 227.5 29.6 254 533-794 67-355 (356)
132 1ri6_A Putative isomerase YBHE 99.9 5.3E-23 1.8E-27 222.7 33.0 267 566-834 7-305 (343)
133 1nir_A Nitrite reductase; hemo 99.9 2.8E-23 9.6E-28 243.3 32.2 267 560-834 145-455 (543)
134 2ecf_A Dipeptidyl peptidase IV 99.9 2.2E-23 7.5E-28 252.1 30.4 275 552-834 36-410 (741)
135 2ecf_A Dipeptidyl peptidase IV 99.9 6.4E-23 2.2E-27 248.0 32.6 272 554-833 110-455 (741)
136 2ojh_A Uncharacterized protein 99.9 6.2E-23 2.1E-27 216.1 27.5 253 569-828 17-293 (297)
137 1ri6_A Putative isomerase YBHE 99.9 5.7E-22 2E-26 214.5 34.7 295 505-819 7-335 (343)
138 1pby_B Quinohemoprotein amine 99.9 2.2E-22 7.5E-27 217.2 30.6 262 565-834 2-307 (337)
139 3u4y_A Uncharacterized protein 99.9 7.4E-22 2.5E-26 213.8 34.5 292 503-818 10-326 (331)
140 2ojh_A Uncharacterized protein 99.9 9.2E-23 3.1E-27 214.8 26.6 238 547-787 36-293 (297)
141 3o4h_A Acylamino-acid-releasin 99.9 2.5E-22 8.6E-27 236.5 29.1 267 552-834 21-312 (582)
142 1xfd_A DIP, dipeptidyl aminope 99.9 6.6E-23 2.2E-27 247.0 23.4 275 554-834 18-390 (723)
143 2z3z_A Dipeptidyl aminopeptida 99.9 1.6E-21 5.5E-26 234.6 32.3 274 552-834 81-432 (706)
144 1k32_A Tricorn protease; prote 99.9 9.7E-22 3.3E-26 247.7 29.8 278 545-834 196-499 (1045)
145 1k32_A Tricorn protease; prote 99.9 2.3E-21 7.9E-26 244.3 32.9 278 545-834 92-458 (1045)
146 1xfd_A DIP, dipeptidyl aminope 99.9 1.6E-21 5.5E-26 234.9 28.3 298 504-825 29-428 (723)
147 1pby_B Quinohemoprotein amine 99.9 6.5E-21 2.2E-25 205.7 29.3 268 504-800 2-314 (337)
148 3hfq_A Uncharacterized protein 99.9 2.6E-20 8.8E-25 203.7 34.3 267 566-833 4-313 (347)
149 1jmx_B Amine dehydrogenase; ox 99.9 9.8E-21 3.4E-25 205.6 29.2 270 557-834 4-322 (349)
150 3pe7_A Oligogalacturonate lyas 99.9 5.9E-21 2E-25 211.5 27.6 286 545-833 23-378 (388)
151 3hfq_A Uncharacterized protein 99.9 7.8E-20 2.7E-24 199.9 34.1 250 550-801 37-324 (347)
152 3scy_A Hypothetical bacterial 99.9 2.4E-19 8.1E-24 197.4 38.1 262 551-815 48-360 (361)
153 2z3z_A Dipeptidyl aminopeptida 99.9 5E-20 1.7E-24 221.5 31.5 245 547-798 115-437 (706)
154 3vgz_A Uncharacterized protein 99.9 2.5E-19 8.5E-24 195.0 32.5 235 594-834 40-300 (353)
155 3scy_A Hypothetical bacterial 99.9 4E-19 1.4E-23 195.5 33.5 268 563-833 12-333 (361)
156 2oit_A Nucleoporin 214KDA; NH2 99.8 1.1E-19 3.7E-24 206.9 27.7 240 552-794 36-331 (434)
157 1z68_A Fibroblast activation p 99.8 1.5E-20 5.3E-25 226.6 18.3 271 557-834 20-388 (719)
158 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.4E-18 4.9E-23 192.3 31.7 267 566-834 4-338 (365)
159 3c5m_A Oligogalacturonate lyas 99.8 1.4E-19 4.8E-24 200.2 21.6 272 555-833 38-378 (396)
160 1jmx_B Amine dehydrogenase; ox 99.8 2.5E-18 8.6E-23 186.5 30.2 273 500-801 8-330 (349)
161 1z68_A Fibroblast activation p 99.8 2.2E-19 7.4E-24 216.6 22.7 274 554-834 61-440 (719)
162 1jof_A Carboxy-CIS,CIS-muconat 99.8 2E-17 6.7E-22 183.1 32.6 246 551-798 38-343 (365)
163 3o4h_A Acylamino-acid-releasin 99.8 8.7E-19 3E-23 206.2 22.8 229 594-834 21-273 (582)
164 4a5s_A Dipeptidyl peptidase 4 99.8 1.1E-17 3.7E-22 203.1 29.7 266 553-825 17-381 (740)
165 2oit_A Nucleoporin 214KDA; NH2 99.8 8.1E-18 2.8E-22 191.4 24.2 212 574-797 23-279 (434)
166 3azo_A Aminopeptidase; POP fam 99.8 1.8E-17 6.1E-22 197.7 27.7 281 547-833 18-363 (662)
167 4a5s_A Dipeptidyl peptidase 4 99.8 4.5E-17 1.5E-21 197.6 30.5 295 504-826 29-435 (740)
168 2oiz_A Aromatic amine dehydrog 99.8 1.3E-16 4.5E-21 176.9 30.2 262 547-819 46-360 (361)
169 2oiz_A Aromatic amine dehydrog 99.8 1.6E-16 5.5E-21 176.1 28.9 263 563-834 14-331 (361)
170 2dg1_A DRP35, lactonase; beta 99.7 4.8E-16 1.6E-20 168.7 29.4 268 553-827 6-300 (333)
171 3fvz_A Peptidyl-glycine alpha- 99.7 6.7E-16 2.3E-20 168.4 30.7 239 553-796 24-322 (329)
172 2gop_A Trilobed protease; beta 99.7 4.8E-16 1.6E-20 169.3 28.9 252 554-833 16-327 (347)
173 1qks_A Cytochrome CD1 nitrite 99.7 1.6E-14 5.5E-19 169.3 41.1 308 504-834 168-535 (567)
174 1q7f_A NHL, brain tumor CG1071 99.7 4.2E-15 1.4E-19 157.7 32.7 237 550-797 27-281 (286)
175 3pe7_A Oligogalacturonate lyas 99.7 5.1E-16 1.7E-20 171.7 26.2 245 546-796 74-384 (388)
176 1q7f_A NHL, brain tumor CG1071 99.7 6.1E-15 2.1E-19 156.5 32.6 234 592-834 27-277 (286)
177 2z2n_A Virginiamycin B lyase; 99.7 1E-13 3.5E-18 146.7 40.6 275 548-832 10-291 (299)
178 3azo_A Aminopeptidase; POP fam 99.7 6.2E-16 2.1E-20 184.3 25.6 241 557-802 81-375 (662)
179 3fvz_A Peptidyl-glycine alpha- 99.7 5E-15 1.7E-19 161.5 29.0 234 594-834 23-319 (329)
180 2dg1_A DRP35, lactonase; beta 99.7 4.4E-14 1.5E-18 153.1 36.0 244 545-795 37-315 (333)
181 2xdw_A Prolyl endopeptidase; a 99.7 3.5E-15 1.2E-19 180.1 29.1 245 550-798 122-416 (710)
182 3e5z_A Putative gluconolactona 99.7 1.4E-14 4.6E-19 154.9 29.5 243 546-800 21-290 (296)
183 3dsm_A Uncharacterized protein 99.7 2.3E-14 7.9E-19 156.4 30.8 251 572-834 15-299 (328)
184 2gop_A Trilobed protease; beta 99.7 1.3E-14 4.5E-19 157.9 28.3 232 553-808 59-342 (347)
185 1qks_A Cytochrome CD1 nitrite 99.7 2.1E-13 7.3E-18 159.8 38.1 265 562-834 165-474 (567)
186 3e5z_A Putative gluconolactona 99.7 5.4E-14 1.8E-18 150.2 29.7 240 584-832 17-282 (296)
187 2qc5_A Streptogramin B lactona 99.6 1E-12 3.5E-17 139.0 38.7 275 548-833 15-296 (300)
188 2bkl_A Prolyl endopeptidase; m 99.6 5E-15 1.7E-19 178.3 23.4 246 550-803 118-404 (695)
189 3c5m_A Oligogalacturonate lyas 99.6 4.4E-15 1.5E-19 164.0 20.5 248 577-834 13-326 (396)
190 3dsm_A Uncharacterized protein 99.6 1E-13 3.5E-18 151.2 29.4 253 554-814 45-319 (328)
191 3sjl_D Methylamine dehydrogena 99.6 9.2E-14 3.1E-18 154.1 27.6 271 558-834 38-360 (386)
192 1rwi_B Serine/threonine-protei 99.6 1.1E-13 3.7E-18 144.9 26.7 238 554-798 25-266 (270)
193 2mad_H Methylamine dehydrogena 99.6 1.6E-12 5.6E-17 144.6 37.0 266 560-834 28-347 (373)
194 2xdw_A Prolyl endopeptidase; a 99.6 1.9E-13 6.6E-18 164.8 31.0 268 562-834 81-411 (710)
195 1rwi_B Serine/threonine-protei 99.6 1.5E-13 5.3E-18 143.8 25.6 233 596-834 25-261 (270)
196 3no2_A Uncharacterized protein 99.6 8.9E-13 3.1E-17 140.5 29.1 240 563-813 4-272 (276)
197 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 2.1E-12 7.1E-17 138.2 31.6 239 550-796 15-299 (314)
198 1yr2_A Prolyl oligopeptidase; 99.6 2.6E-13 9E-18 164.5 26.6 245 551-802 161-447 (741)
199 2bkl_A Prolyl endopeptidase; m 99.6 2.5E-13 8.5E-18 163.5 26.1 268 561-834 76-394 (695)
200 2z2n_A Virginiamycin B lyase; 99.6 2.7E-11 9.3E-16 127.9 37.9 238 550-798 54-297 (299)
201 2mad_H Methylamine dehydrogena 99.5 3.4E-11 1.2E-15 134.0 39.9 235 557-802 70-356 (373)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 4.4E-12 1.5E-16 135.6 29.3 238 593-834 16-296 (314)
203 3c75_H MADH, methylamine dehyd 99.5 1.8E-12 6.3E-17 146.0 25.6 266 562-834 82-399 (426)
204 3sjl_D Methylamine dehydrogena 99.5 8.8E-12 3E-16 138.2 29.2 252 557-817 82-384 (386)
205 1yr2_A Prolyl oligopeptidase; 99.5 2E-12 6.7E-17 156.9 26.3 268 561-834 115-438 (741)
206 3no2_A Uncharacterized protein 99.5 1.7E-11 6E-16 130.4 29.1 215 502-742 4-233 (276)
207 3iuj_A Prolyl endopeptidase; h 99.5 2.9E-12 9.8E-17 154.3 24.1 245 550-803 126-412 (693)
208 2qc5_A Streptogramin B lactona 99.5 1.7E-10 6E-15 121.7 34.7 234 592-834 17-257 (300)
209 3g4e_A Regucalcin; six bladed 99.4 1.4E-10 4.6E-15 124.3 33.6 229 589-825 7-260 (297)
210 3hrp_A Uncharacterized protein 99.4 4.2E-11 1.4E-15 134.9 30.4 230 595-833 131-406 (409)
211 3g4e_A Regucalcin; six bladed 99.4 1.4E-10 4.7E-15 124.3 32.8 232 548-786 8-262 (297)
212 3hrp_A Uncharacterized protein 99.4 1.1E-10 3.7E-15 131.5 32.2 232 553-794 131-408 (409)
213 2qe8_A Uncharacterized protein 99.4 5.5E-12 1.9E-16 138.3 20.8 261 553-829 17-313 (343)
214 2ghs_A AGR_C_1268P; regucalcin 99.4 4.1E-10 1.4E-14 122.5 33.8 220 555-787 51-293 (326)
215 3c75_H MADH, methylamine dehyd 99.4 4.6E-11 1.6E-15 134.6 26.3 237 557-802 122-408 (426)
216 3dr2_A Exported gluconolactona 99.4 7.2E-11 2.5E-15 126.9 26.0 236 586-832 36-302 (305)
217 2ghs_A AGR_C_1268P; regucalcin 99.4 7.4E-10 2.5E-14 120.4 33.8 221 596-826 50-291 (326)
218 3dr2_A Exported gluconolactona 99.4 1E-10 3.6E-15 125.6 26.5 233 547-793 39-303 (305)
219 1xip_A Nucleoporin NUP159; bet 99.3 1.7E-11 5.7E-16 136.4 17.9 172 554-740 39-232 (388)
220 1mda_H Methylamine dehydrogena 99.3 1.8E-11 6E-16 135.7 17.7 254 545-816 59-366 (368)
221 3q7m_A Lipoprotein YFGL, BAMB; 99.3 5E-09 1.7E-13 115.6 36.0 255 563-834 102-375 (376)
222 3hxj_A Pyrrolo-quinoline quino 99.3 3E-10 1E-14 122.1 21.8 258 554-833 61-320 (330)
223 2hz6_A Endoplasmic reticulum t 99.2 1E-13 3.5E-18 154.1 -6.7 223 563-798 8-238 (369)
224 1kb0_A Quinohemoprotein alcoho 99.2 1.6E-09 5.5E-14 129.9 29.0 263 564-834 77-504 (677)
225 1mda_H Methylamine dehydrogena 99.2 1.6E-10 5.5E-15 128.0 18.7 246 575-834 47-343 (368)
226 1yiq_A Quinohemoprotein alcoho 99.2 8E-10 2.7E-14 132.7 26.4 266 564-834 70-502 (689)
227 3iuj_A Prolyl endopeptidase; h 99.2 5E-10 1.7E-14 134.7 24.1 236 592-834 126-402 (693)
228 1yiq_A Quinohemoprotein alcoho 99.2 3.4E-09 1.2E-13 127.2 30.4 256 564-825 121-537 (689)
229 3q7m_A Lipoprotein YFGL, BAMB; 99.2 6E-09 2E-13 114.9 29.8 254 564-834 53-334 (376)
230 1kb0_A Quinohemoprotein alcoho 99.2 2.6E-09 8.9E-14 128.0 28.7 254 563-823 127-536 (677)
231 1npe_A Nidogen, entactin; glyc 99.2 2.8E-08 9.5E-13 104.3 33.3 247 565-819 2-263 (267)
232 1xip_A Nucleoporin NUP159; bet 99.2 4.2E-10 1.4E-14 125.2 18.3 169 639-824 39-231 (388)
233 2ece_A 462AA long hypothetical 99.2 2.3E-08 8E-13 111.8 32.3 223 559-784 88-399 (462)
234 3hxj_A Pyrrolo-quinoline quino 99.1 7.2E-10 2.5E-14 119.1 15.2 256 558-834 25-281 (330)
235 1fwx_A Nitrous oxide reductase 99.1 3.3E-09 1.1E-13 122.4 20.6 257 567-826 18-407 (595)
236 2ece_A 462AA long hypothetical 99.1 5.6E-08 1.9E-12 108.7 29.2 222 601-825 88-399 (462)
237 2qe8_A Uncharacterized protein 99.1 3E-09 1E-13 116.4 18.8 220 595-834 17-275 (343)
238 1fwx_A Nitrous oxide reductase 99.0 8.7E-09 3E-13 118.9 21.1 234 563-800 100-435 (595)
239 1kv9_A Type II quinohemoprotei 99.0 4.2E-08 1.4E-12 117.3 28.0 264 564-834 66-485 (668)
240 1npe_A Nidogen, entactin; glyc 99.0 3.4E-07 1.2E-11 95.9 30.9 222 607-834 2-235 (267)
241 2iwa_A Glutamine cyclotransfer 99.0 1.4E-07 4.9E-12 99.1 26.3 204 585-797 10-238 (266)
242 4a2l_A BT_4663, two-component 99.0 1.9E-06 6.5E-11 105.0 39.3 268 552-833 262-567 (795)
243 2hz6_A Endoplasmic reticulum t 99.0 4E-10 1.4E-14 125.0 5.9 201 605-819 8-216 (369)
244 2ad6_A Methanol dehydrogenase 98.9 1.9E-07 6.6E-12 109.5 28.4 262 564-834 62-491 (571)
245 4a2l_A BT_4663, two-component 98.9 2E-06 6.9E-11 104.8 38.3 266 552-833 214-522 (795)
246 2fp8_A Strictosidine synthase; 98.9 8.9E-07 3E-11 95.5 29.2 234 554-798 20-315 (322)
247 2p4o_A Hypothetical protein; p 98.9 1.8E-06 6.1E-11 92.6 30.6 233 584-827 22-278 (306)
248 2fp8_A Strictosidine synthase; 98.9 1.1E-06 3.7E-11 94.8 28.9 234 595-834 19-310 (322)
249 1w6s_A Methanol dehydrogenase 98.9 4E-07 1.4E-11 107.1 27.3 264 564-834 62-500 (599)
250 3v9f_A Two-component system se 98.9 4.3E-06 1.5E-10 101.7 37.1 274 552-834 257-565 (781)
251 2iwa_A Glutamine cyclotransfer 98.8 5.8E-07 2E-11 94.5 24.9 186 639-832 22-232 (266)
252 1kv9_A Type II quinohemoprotei 98.8 6.4E-07 2.2E-11 107.1 26.4 255 564-825 117-520 (668)
253 3nol_A Glutamine cyclotransfer 98.8 1.3E-06 4.5E-11 91.0 24.4 192 585-786 32-245 (262)
254 2p4o_A Hypothetical protein; p 98.8 6.9E-06 2.3E-10 88.0 30.8 237 542-787 22-279 (306)
255 1k3i_A Galactose oxidase precu 98.8 1.6E-07 5.3E-12 112.2 19.6 266 557-826 190-530 (656)
256 1ijq_A LDL receptor, low-densi 98.7 4E-05 1.4E-09 82.6 36.0 228 566-798 3-240 (316)
257 2ad6_A Methanol dehydrogenase 98.7 2.7E-06 9.1E-11 99.8 28.5 254 564-823 115-523 (571)
258 3v9f_A Two-component system se 98.7 1.4E-05 4.9E-10 97.0 35.6 272 553-833 163-474 (781)
259 3nol_A Glutamine cyclotransfer 98.7 1.8E-06 6E-11 90.1 23.4 179 638-826 43-244 (262)
260 1flg_A Protein (quinoprotein e 98.7 6.3E-06 2.1E-10 96.8 31.0 264 565-834 69-513 (582)
261 3v64_C Agrin; beta propeller, 98.7 1.8E-05 6.2E-10 86.7 32.5 237 553-798 34-277 (349)
262 3nok_A Glutaminyl cyclase; bet 98.7 1.5E-06 5.1E-11 90.6 22.1 191 585-786 44-255 (268)
263 3v65_B Low-density lipoprotein 98.7 1.9E-05 6.4E-10 87.8 31.2 236 555-799 79-321 (386)
264 3mbr_X Glutamine cyclotransfer 98.6 6.7E-06 2.3E-10 84.9 24.9 192 585-786 10-224 (243)
265 3nok_A Glutaminyl cyclase; bet 98.6 2.8E-06 9.6E-11 88.6 21.8 177 638-825 55-253 (268)
266 3mbr_X Glutamine cyclotransfer 98.6 1E-05 3.4E-10 83.6 25.8 178 638-825 21-222 (243)
267 1w6s_A Methanol dehydrogenase 98.6 1.2E-05 4.2E-10 94.4 29.7 251 567-824 124-534 (599)
268 3tc9_A Hypothetical hydrolase; 98.6 8.4E-06 2.9E-10 92.1 26.5 233 596-833 138-426 (430)
269 2xbg_A YCF48-like protein; pho 98.6 9E-05 3.1E-09 80.2 33.5 276 539-834 24-319 (327)
270 1ijq_A LDL receptor, low-densi 98.6 0.00012 4.2E-09 78.7 33.5 219 608-833 3-234 (316)
271 1flg_A Protein (quinoprotein e 98.6 1.9E-05 6.4E-10 92.8 28.8 255 564-824 117-547 (582)
272 3v64_C Agrin; beta propeller, 98.5 7.6E-05 2.6E-09 81.7 31.6 228 597-832 36-270 (349)
273 2xe4_A Oligopeptidase B; hydro 98.5 6.8E-06 2.3E-10 99.6 25.3 238 554-800 175-462 (751)
274 3sov_A LRP-6, low-density lipo 98.5 4.2E-05 1.4E-09 82.7 28.7 226 566-798 6-240 (318)
275 3p5b_L Low density lipoprotein 98.5 0.00021 7.2E-09 79.7 34.9 230 566-800 85-324 (400)
276 3v65_B Low-density lipoprotein 98.5 6.5E-05 2.2E-09 83.4 30.1 228 598-833 80-314 (386)
277 3qqz_A Putative uncharacterize 98.5 4.2E-05 1.4E-09 79.9 26.5 199 632-833 21-249 (255)
278 3amr_A 3-phytase; beta-propell 98.4 4.9E-05 1.7E-09 82.4 26.1 194 563-762 39-272 (355)
279 3tc9_A Hypothetical hydrolase; 98.4 8.1E-05 2.8E-09 84.0 28.7 235 554-795 138-429 (430)
280 4hw6_A Hypothetical protein, I 98.4 6.2E-05 2.1E-09 85.0 27.6 233 596-833 140-429 (433)
281 3qqz_A Putative uncharacterize 98.4 0.0006 2E-08 71.1 32.7 202 546-749 20-251 (255)
282 2xe4_A Oligopeptidase B; hydro 98.4 2.5E-05 8.7E-10 94.5 25.8 192 596-794 175-398 (751)
283 3p5b_L Low density lipoprotein 98.4 0.00032 1.1E-08 78.2 32.6 219 608-833 85-316 (400)
284 3sov_A LRP-6, low-density lipo 98.4 0.00022 7.4E-09 77.0 29.8 216 614-833 11-234 (318)
285 3m0c_C LDL receptor, low-densi 98.4 0.0004 1.4E-08 84.1 33.9 230 566-800 397-636 (791)
286 4hw6_A Hypothetical protein, I 98.3 0.00021 7.3E-09 80.6 27.8 235 554-795 140-432 (433)
287 3kya_A Putative phosphatase; s 98.2 0.00035 1.2E-08 79.6 27.3 233 596-833 140-471 (496)
288 1k3i_A Galactose oxidase precu 98.2 5.1E-05 1.7E-09 90.4 21.1 228 599-827 190-476 (656)
289 3m0c_C LDL receptor, low-densi 98.2 0.0015 5.1E-08 79.1 33.1 216 608-831 397-626 (791)
290 3kya_A Putative phosphatase; s 98.2 0.00055 1.9E-08 78.0 27.5 240 555-800 141-479 (496)
291 4a0p_A LRP6, LRP-6, low-densit 98.1 0.0018 6.1E-08 76.5 32.5 219 608-832 8-232 (628)
292 3s94_A LRP-6, low-density lipo 98.0 0.0012 3.9E-08 78.0 28.3 222 573-799 17-246 (619)
293 4a0p_A LRP6, LRP-6, low-densit 98.0 0.0055 1.9E-07 72.3 33.9 224 566-798 8-239 (628)
294 2ism_A Putative oxidoreductase 98.0 0.0009 3.1E-08 73.2 25.3 225 553-783 31-332 (352)
295 3s94_A LRP-6, low-density lipo 98.0 0.0066 2.3E-07 71.5 33.5 276 553-832 84-418 (619)
296 1n7d_A LDL receptor, low-densi 98.0 1.5E-05 5.2E-10 95.6 10.4 226 573-802 385-620 (699)
297 2xbg_A YCF48-like protein; pho 98.0 0.0014 4.8E-08 70.7 25.1 231 552-794 79-320 (327)
298 3ott_A Two-component system se 98.0 0.015 5E-07 70.1 36.4 263 552-830 62-346 (758)
299 3sre_A PON1, serum paraoxonase 98.0 0.0014 4.9E-08 71.5 24.8 196 596-795 51-297 (355)
300 3a9g_A Putative uncharacterize 97.9 0.0053 1.8E-07 67.1 29.3 228 553-783 29-329 (354)
301 3ott_A Two-component system se 97.9 0.014 4.9E-07 70.2 35.9 260 552-828 21-299 (758)
302 2xzh_A Clathrin heavy chain 1; 97.9 0.012 4.2E-07 62.7 30.3 248 573-830 48-325 (365)
303 1bpo_A Protein (clathrin); cla 97.9 0.033 1.1E-06 61.6 34.5 248 573-830 47-324 (494)
304 3ei3_A DNA damage-binding prot 97.9 0.046 1.6E-06 68.9 40.7 272 553-833 652-995 (1158)
305 2p9w_A MAL S 1 allergenic prot 97.9 0.0028 9.7E-08 68.0 25.0 201 550-751 10-265 (334)
306 2ism_A Putative oxidoreductase 97.9 0.0039 1.3E-07 68.0 26.6 224 595-825 31-333 (352)
307 3amr_A 3-phytase; beta-propell 97.8 0.0035 1.2E-07 67.9 25.0 180 651-834 41-260 (355)
308 2xzh_A Clathrin heavy chain 1; 97.8 0.024 8.2E-07 60.4 30.6 234 557-800 71-336 (365)
309 3a9g_A Putative uncharacterize 97.8 0.0085 2.9E-07 65.5 28.2 226 594-825 28-330 (354)
310 2vpj_A Kelch-like protein 12; 97.8 0.002 6.7E-08 68.1 21.9 228 563-801 14-283 (301)
311 2g8s_A Glucose/sorbosone dehyd 97.8 0.005 1.7E-07 67.2 25.1 233 595-830 18-347 (353)
312 2p9w_A MAL S 1 allergenic prot 97.7 0.0031 1.1E-07 67.7 22.5 197 634-832 9-260 (334)
313 3das_A Putative oxidoreductase 97.7 0.02 6.9E-07 62.2 29.3 233 589-825 26-326 (347)
314 1bpo_A Protein (clathrin); cla 97.7 0.052 1.8E-06 60.0 31.2 234 557-800 70-335 (494)
315 2g8s_A Glucose/sorbosone dehyd 97.7 0.0073 2.5E-07 65.9 24.8 226 554-782 19-339 (353)
316 1n7d_A LDL receptor, low-densi 97.7 0.00012 4.1E-09 87.8 11.1 214 614-833 384-610 (699)
317 3ii7_A Kelch-like protein 7; p 97.6 0.0096 3.3E-07 62.9 23.4 226 565-800 13-276 (306)
318 2xn4_A Kelch-like protein 2; s 97.5 0.0082 2.8E-07 63.4 21.5 228 564-802 16-282 (302)
319 3das_A Putative oxidoreductase 97.4 0.074 2.5E-06 57.7 28.4 232 548-783 27-325 (347)
320 3sre_A PON1, serum paraoxonase 97.4 0.14 4.9E-06 55.6 29.9 201 546-750 43-297 (355)
321 1zgk_A Kelch-like ECH-associat 97.3 0.0076 2.6E-07 64.0 19.1 230 562-802 23-293 (308)
322 4asc_A Kelch repeat and BTB do 97.3 0.025 8.7E-07 60.0 23.0 225 566-802 7-283 (315)
323 3sbq_A Nitrous-oxide reductase 97.3 0.022 7.6E-07 64.7 22.9 257 567-825 73-453 (638)
324 2vpj_A Kelch-like protein 12; 97.3 0.01 3.5E-07 62.5 19.6 213 605-827 14-263 (301)
325 4b8c_D Glucose-repressible alc 97.3 7.2E-05 2.5E-09 90.1 3.0 14 803-816 706-719 (727)
326 3ii7_A Kelch-like protein 7; p 97.3 0.019 6.5E-07 60.6 21.6 211 607-827 13-257 (306)
327 3s25_A Hypothetical 7-bladed b 97.3 0.059 2E-06 57.4 25.1 234 561-825 22-280 (302)
328 4b8c_D Glucose-repressible alc 97.2 8.6E-05 2.9E-09 89.5 2.2 9 573-581 487-495 (727)
329 2xn4_A Kelch-like protein 2; s 97.2 0.018 6.3E-07 60.6 20.2 212 607-828 17-262 (302)
330 3ei3_A DNA damage-binding prot 97.2 0.53 1.8E-05 59.2 35.7 242 574-825 492-755 (1158)
331 1cru_A Protein (soluble quinop 97.2 0.16 5.4E-06 57.3 28.3 156 594-750 26-258 (454)
332 2woz_A Kelch repeat and BTB do 97.1 0.058 2E-06 57.2 23.5 227 566-802 18-293 (318)
333 3s25_A Hypothetical 7-bladed b 97.1 0.075 2.6E-06 56.6 23.7 177 557-752 57-256 (302)
334 3pbp_A Nucleoporin NUP82; beta 96.9 0.049 1.7E-06 60.2 20.4 141 690-831 31-206 (452)
335 2uvk_A YJHT; unknown function, 96.9 0.018 6.1E-07 62.3 17.2 231 563-801 19-347 (357)
336 4asc_A Kelch repeat and BTB do 96.9 0.1 3.4E-06 55.3 22.0 210 608-827 7-253 (315)
337 2woz_A Kelch repeat and BTB do 96.8 0.1 3.4E-06 55.4 21.3 203 617-827 25-263 (318)
338 2be1_A Serine/threonine-protei 96.7 0.021 7.2E-07 61.8 15.3 193 607-801 11-236 (339)
339 2be1_A Serine/threonine-protei 96.7 0.0069 2.4E-07 65.6 11.1 187 565-753 11-233 (339)
340 1cru_A Protein (soluble quinop 96.7 0.48 1.6E-05 53.3 26.8 105 553-657 27-163 (454)
341 3iot_A Maltose-binding protein 96.7 0.0017 5.8E-08 73.3 6.4 13 53-65 337-349 (449)
342 3b7f_A Glycosyl hydrolase, BNR 96.5 1.3 4.5E-05 48.2 28.7 256 552-815 54-391 (394)
343 1xi4_A Clathrin heavy chain; a 96.4 0.14 4.9E-06 64.3 21.7 219 572-800 46-293 (1630)
344 1zgk_A Kelch-like ECH-associat 96.4 0.091 3.1E-06 55.5 17.9 214 605-828 24-273 (308)
345 1tl2_A L10, protein (tachylect 96.4 0.2 6.9E-06 50.5 18.6 172 650-830 4-203 (236)
346 2uvk_A YJHT; unknown function, 96.4 0.21 7.1E-06 53.7 20.7 185 563-753 65-344 (357)
347 1xi4_A Clathrin heavy chain; a 96.4 0.094 3.2E-06 65.9 19.3 235 558-800 71-335 (1630)
348 3pbp_A Nucleoporin NUP82; beta 96.3 0.22 7.7E-06 55.0 20.3 143 646-792 29-208 (452)
349 1tl2_A L10, protein (tachylect 96.1 0.2 7E-06 50.4 16.9 176 606-790 4-204 (236)
350 2zwa_A Leucine carboxyl methyl 96.0 0.16 5.4E-06 60.6 18.7 221 605-826 397-674 (695)
351 2wg3_C Hedgehog-interacting pr 95.9 3.1 0.00011 46.8 29.0 231 554-784 15-354 (463)
352 3sbq_A Nitrous-oxide reductase 95.7 1.1 3.6E-05 51.2 22.2 127 638-766 323-492 (638)
353 3uc1_A DNA gyrase subunit A; D 95.5 2.3 7.9E-05 45.5 23.8 263 565-828 4-321 (327)
354 4hvt_A Ritya.17583.B, post-pro 95.5 1 3.4E-05 53.7 22.8 237 557-800 133-433 (711)
355 3b7f_A Glycosyl hydrolase, BNR 95.2 4.3 0.00015 44.1 29.4 209 565-784 23-297 (394)
356 2zwa_A Leucine carboxyl methyl 95.1 0.77 2.6E-05 54.6 20.3 151 563-714 451-639 (695)
357 3iot_A Maltose-binding protein 95.1 0.006 2E-07 68.8 1.8 14 55-68 335-348 (449)
358 2wg3_C Hedgehog-interacting pr 95.0 6.1 0.00021 44.3 29.8 229 595-825 14-354 (463)
359 3q6k_A 43.2 kDa salivary prote 94.8 5.9 0.0002 43.2 24.3 165 661-825 124-342 (381)
360 3qhy_B Beta-lactamase inhibito 94.1 1.5 5.1E-05 45.8 17.2 240 554-818 25-265 (282)
361 1wp5_A Topoisomerase IV; broke 94.1 5.6 0.00019 42.4 22.0 233 562-796 3-277 (323)
362 3qhy_B Beta-lactamase inhibito 94.0 1.9 6.7E-05 44.9 17.9 216 595-833 24-242 (282)
363 3kci_A Probable E3 ubiquitin-p 93.5 10 0.00035 41.2 28.0 230 597-833 55-341 (389)
364 1suu_A DNA gyrase subunit A; t 93.3 9.6 0.00033 40.3 27.6 231 561-794 5-281 (312)
365 3no0_A DNA gyrase subunit A; D 93.1 8 0.00027 40.1 20.6 197 595-796 24-246 (276)
366 1zi0_A DNA gyrase subunit A; b 92.6 12 0.0004 39.5 26.4 233 562-796 1-277 (307)
367 3l6v_A GYRA, DNA gyrase subuni 92.3 15 0.0005 39.9 24.0 225 602-830 3-309 (370)
368 1sqj_A OXG-RCBH, oligoxylogluc 91.9 18 0.00061 43.4 24.6 147 552-700 14-190 (789)
369 3l6v_A GYRA, DNA gyrase subuni 91.9 16 0.00056 39.5 28.4 234 560-795 3-315 (370)
370 4hvt_A Ritya.17583.B, post-pro 91.7 10 0.00036 44.9 21.8 223 598-825 132-415 (711)
371 3uc1_A DNA gyrase subunit A; D 91.1 18 0.00062 38.4 22.6 195 554-751 43-279 (327)
372 1sqj_A OXG-RCBH, oligoxylogluc 91.0 32 0.0011 41.2 25.6 144 594-740 14-188 (789)
373 1zi0_A DNA gyrase subunit A; b 90.8 18 0.00061 38.0 24.6 223 604-830 1-270 (307)
374 1suu_A DNA gyrase subunit A; t 89.0 25 0.00086 37.0 26.2 189 604-796 6-231 (312)
375 3mvd_K Regulator of chromosome 88.7 31 0.001 37.7 36.1 227 595-833 75-370 (423)
376 3no0_A DNA gyrase subunit A; D 88.0 27 0.00092 36.1 22.4 194 553-750 24-245 (276)
377 1uuj_A Platelet-activating fac 87.2 0.63 2.2E-05 39.3 4.5 32 10-41 11-42 (88)
378 1wp5_A Topoisomerase IV; broke 85.3 41 0.0014 35.5 24.5 190 604-796 3-225 (323)
379 2xtc_A F-box-like/WD repeat-co 85.3 0.6 2.1E-05 39.7 3.4 32 11-42 7-38 (90)
380 3kci_A Probable E3 ubiquitin-p 81.6 62 0.0021 34.8 31.2 234 555-796 55-345 (389)
381 2cn3_A Xyloglucanase, beta-1,4 77.9 1.2E+02 0.004 35.8 24.6 101 596-698 24-151 (737)
382 3q6k_A 43.2 kDa salivary prote 77.2 86 0.0029 33.9 22.9 165 575-740 124-342 (381)
383 2cn3_A Xyloglucanase, beta-1,4 73.6 1.5E+02 0.0051 34.9 26.3 103 554-657 24-151 (737)
384 2zux_A YESW protein; beta-prop 72.1 1.4E+02 0.0048 34.0 27.0 228 551-798 177-481 (591)
385 4gq2_M Nucleoporin NUP120; bet 67.9 94 0.0032 38.0 17.4 38 553-590 236-273 (950)
386 4d9s_A UVB-resistance protein 62.2 1.7E+02 0.0059 31.4 35.0 267 553-833 16-353 (406)
387 4gq2_M Nucleoporin NUP120; bet 58.1 3.2E+02 0.011 33.2 25.1 38 681-718 237-274 (950)
388 3zwu_A Alkaline phosphatase PH 55.8 1.5E+02 0.0051 34.1 15.0 58 767-824 477-548 (592)
389 1zvt_A Topoisomerase IV subuni 55.0 1.8E+02 0.0061 29.4 14.1 143 566-710 4-163 (256)
390 4a9v_A PHOX; hydrolase, beta-p 52.8 1.6E+02 0.0054 33.8 14.2 59 682-740 478-549 (592)
391 4d9s_A UVB-resistance protein 52.1 2.5E+02 0.0085 30.1 35.7 232 553-795 68-356 (406)
392 3zwu_A Alkaline phosphatase PH 51.4 1.1E+02 0.0038 35.1 13.0 59 682-740 478-549 (592)
393 1qb3_A Cyclin-dependent kinase 50.5 3.7 0.00013 37.6 0.3 11 25-35 13-23 (150)
394 1zvt_A Topoisomerase IV subuni 49.0 1.5E+02 0.0053 29.8 12.5 142 607-751 3-163 (256)
395 3a0f_A Xyloglucanase; beta-pro 48.7 3.9E+02 0.013 31.4 26.1 147 593-742 19-203 (763)
396 3mez_B Mannose-specific lectin 48.3 1.2E+02 0.0042 26.3 10.2 60 691-751 24-84 (113)
397 3of7_A Regulator of chromosome 46.8 3.2E+02 0.011 29.9 27.8 147 638-794 148-339 (473)
398 4h3o_A Lectin; cadmium, plant 44.5 1.3E+02 0.0043 25.9 9.4 45 726-782 54-98 (105)
399 1a12_A RCC1, regulator of chro 43.0 3.4E+02 0.012 29.0 33.4 226 595-833 59-361 (413)
400 4fhn_B Nucleoporin NUP120; pro 41.0 5.5E+02 0.019 31.8 18.2 37 682-718 240-276 (1139)
401 3f7f_A Nucleoporin NUP120; nuc 39.2 3.8E+02 0.013 31.4 15.0 36 723-763 223-259 (729)
402 4a9v_A PHOX; hydrolase, beta-p 35.0 1.1E+02 0.0038 35.0 9.3 59 766-824 476-548 (592)
403 3a0f_A Xyloglucanase; beta-pro 30.6 7.1E+02 0.024 29.1 31.2 149 551-701 19-203 (763)
404 2d68_A FOP, FGFR1OP; alpha hel 29.8 48 0.0017 27.5 3.9 32 10-41 19-50 (82)
405 4fhn_B Nucleoporin NUP120; pro 29.2 1.3E+02 0.0045 37.5 9.6 34 767-800 239-272 (1139)
406 2zux_A YESW protein; beta-prop 25.9 7.7E+02 0.026 28.0 19.7 153 636-800 177-404 (591)
407 3f7f_A Nucleoporin NUP120; nuc 25.1 90 0.0031 36.7 6.5 38 553-592 222-259 (729)
408 3dzw_A Agglutinin; lectin, man 24.4 3.3E+02 0.011 23.2 9.9 25 726-751 53-77 (109)
409 3of7_A Regulator of chromosome 24.4 7.1E+02 0.024 27.0 30.5 191 595-795 148-404 (473)
410 2zuy_A YESX protein; beta-prop 21.7 9.3E+02 0.032 27.5 28.7 239 551-800 181-504 (620)
411 3mez_A Mannose-specific lectin 20.8 1.3E+02 0.0045 26.0 5.4 24 726-749 53-76 (111)
No 1
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.1e-41 Score=374.57 Aligned_cols=288 Identities=19% Similarity=0.368 Sum_probs=263.9
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 003279 542 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 621 (834)
Q Consensus 542 ~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 621 (834)
......+.+|.+.|++++|+||+++|++|+.||+|+|||+.+++.+..+..|...|.+++|+|++.+|++++.|+.|++|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC---ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEE
Q 003279 622 DTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 622 Dl~s~~---~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~ 697 (834)
|+.+.. .....+.+|...|.++.|++++. +++++.|+.|++||+++++++..+. +...|.+++|+|++.+++++
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 998754 23466789999999999998763 6789999999999999999988887 45679999999999999999
Q ss_pred EcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec--CCCceEEEEEe
Q 003279 698 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TGNKFHSCVFH 774 (834)
Q Consensus 698 s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~--~~~~I~svafs 774 (834)
+.|+.|++||++++.++..+.+|...|.+++|+|++.+|++++ |+.|++||++++ ..+..+.. +...|.+++|+
T Consensus 203 ~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~s 279 (340)
T 1got_B 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSFS 279 (340)
T ss_dssp ETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEEC
T ss_pred eCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC---cEEEEEccCCcccceEEEEEC
Confidence 9999999999999999999999999999999999999999999 999999999987 45555443 23479999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 775 PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 775 pdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
|++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|+|++.+|++|+.||.|+|||
T Consensus 280 ~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999888776 7789999999999999999999999999999997
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.7e-42 Score=389.03 Aligned_cols=284 Identities=26% Similarity=0.486 Sum_probs=266.8
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC
Q 003279 546 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 625 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s 625 (834)
..+.+|.++|++++|+|++.+|++|+.||+|+|||+.+++.+..+.+|.+.|.+++|+|++++|++|+.|++|+|||+.+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEE
Q 003279 626 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYIS 704 (834)
Q Consensus 626 ~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~ 704 (834)
.. .+..+.+|...|.+++|+|++. +|++|+.|+.|++||++++.++..+.. ...+.++.+++++..|++++.|+.|+
T Consensus 182 ~~-~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~ 259 (410)
T 1vyh_C 182 FE-CIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 259 (410)
T ss_dssp SC-EEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred Cc-eeEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence 55 4788899999999999999976 667999999999999999999888875 45699999999999999999999999
Q ss_pred EEECCCCeEEEEEeCCCCCEEEEEEcCC--------------------CCEEEEEe-CCeEEEEEcCCCCCceeEEEeec
Q 003279 705 ILDVETQVCRLKLQGHKNQVHSVCWNTS--------------------GEYLASVS-DELVRVWSIGSGSKGECIHELSC 763 (834)
Q Consensus 705 iwDl~t~~~~~~l~~h~~~I~sl~~spd--------------------g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~ 763 (834)
+||++++.+...+.+|...|.+++|+|+ +.+|++++ |+.|++||++++ .++..+.+
T Consensus 260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---~~~~~~~~ 336 (410)
T 1vyh_C 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTLVG 336 (410)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEEEC
T ss_pred EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC---ceEEEEEC
Confidence 9999999999999999999999999996 67899998 999999999988 78889999
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 764 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 764 ~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
|...|.+++|+|++.+|++++.|+.|++||+.+++.+ .+.+|...|++++|+|++.+|++|+.||+|+||+
T Consensus 337 h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 337 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 9999999999999999999999999999999988766 6779999999999999999999999999999997
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.8e-41 Score=367.34 Aligned_cols=286 Identities=18% Similarity=0.324 Sum_probs=261.9
Q ss_pred EEEEecCCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEeCCCCeE--EEEeccCCCCeEEEEECCCCCEEEEEeCCCe
Q 003279 544 EFQLIPASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRT 617 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpd----g~~Lasgs~Dg~I~IWd~~t~~~--~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~ 617 (834)
.+..+.+|.+.|++|+|+++ +.+|++|+.|++|+|||+.+.+. ...+.+|...|.+++|++++.++++++.|++
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 35677899999999999985 67999999999999999987654 4568999999999999999999999999999
Q ss_pred EEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEE
Q 003279 618 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILA 696 (834)
Q Consensus 618 I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~ 696 (834)
|++||+.++. .+..+..|...+.+++|+|++. +|++++.|+.|++||+++++....+.. ...+.+++|+|++++|++
T Consensus 104 i~lWd~~~~~-~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las 181 (321)
T 3ow8_A 104 IRLWDLENGK-QIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS 181 (321)
T ss_dssp EEEEETTTTE-EEEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred EEEEECCCCC-EEEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEE
Confidence 9999999865 4777888899999999999977 667999999999999999988877765 456999999999999999
Q ss_pred EEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003279 697 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 775 (834)
Q Consensus 697 ~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafsp 775 (834)
++.|+.|++||+++++.+..+.+|...|.+++|+|++.+|++++ |+.|+|||++++ ..+..+..|...|.+++|+|
T Consensus 182 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~sp 258 (321)
T 3ow8_A 182 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA---NLAGTLSGHASWVLNVAFCP 258 (321)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECT
T ss_pred EcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc---ceeEEEcCCCCceEEEEECC
Confidence 99999999999999999999999999999999999999999999 999999999987 67788899999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 776 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 776 dg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|+|++.+|++++.||.|+|||
T Consensus 259 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 259 DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 9999999999999999999999887 6779999999999999999999999999999997
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.7e-40 Score=365.17 Aligned_cols=289 Identities=17% Similarity=0.280 Sum_probs=261.4
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 003279 542 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 621 (834)
Q Consensus 542 ~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 621 (834)
......+.+|.+.|+|++|+|++++||+|+.||+|+|||..+++....+..|...|.+++|+|++.+|++++.|+.|++|
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC-----ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEec--CCCE
Q 003279 622 DTENPD-----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQP--RLGR 693 (834)
Q Consensus 622 Dl~s~~-----~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp--~g~~ 693 (834)
++.... .....+.+|...|.+++|+|++. .|++++.|++|++||+++++++..+.. ...+.++.|+| ++..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 986432 23456778999999999999976 566999999999999999999988874 56789999987 4689
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC--CCceEE
Q 003279 694 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT--GNKFHS 770 (834)
Q Consensus 694 ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~--~~~I~s 770 (834)
|++++.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++ |++|++||++.. ..+..+..+ ...+.+
T Consensus 213 l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~~~~~~~~~~ 289 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD---REVAIYSKESIIFGASS 289 (354)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEEEEEcCCCcccceeE
Confidence 99999999999999999999999999999999999999999999999 999999999887 445444432 347899
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 771 CVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 771 vafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++|+|++.+|++++.|+.|++||+.+++.+ .+.+|...|++++|+|++++|++|+.||.|+||+
T Consensus 290 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 290 VDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999999999888776 6779999999999999999999999999999997
No 5
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.8e-41 Score=376.42 Aligned_cols=291 Identities=17% Similarity=0.337 Sum_probs=260.6
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 003279 541 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 620 (834)
Q Consensus 541 ~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~I 620 (834)
.....+++.+|.+.|++++|+|++++|++|+.|++|+|||+.+++....+..|...|.+++|+|++++|++|+.|+.|++
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCC------ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee------cCCCeeEEEEe
Q 003279 621 WDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQ 688 (834)
Q Consensus 621 WDl~s~~------~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~------~~~~i~~l~~s 688 (834)
||+.+.. .....+.+|...|.++.|.|++...|++|+.|+.|++||+++++.+..+. +...+.++.|+
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence 9997532 12456789999999999999877788899999999999999999887763 34568999998
Q ss_pred c-CCCEEEEEEcCCeEEEEECC-CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC
Q 003279 689 P-RLGRILAAAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 765 (834)
Q Consensus 689 p-~g~~ll~~s~dg~I~iwDl~-t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~ 765 (834)
+ ++..|++++.|+.|++||++ ....+..+.+|...|.+++|+|++.+|++++ |++|++||++++ ..+..+..+.
T Consensus 215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~---~~~~~~~~~~ 291 (380)
T 3iz6_a 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG---HQLQVYNREP 291 (380)
T ss_dssp SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT---EEEEEECCCC
T ss_pred cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC---cEEEEecccc
Confidence 7 78899999999999999998 4577888999999999999999999999999 999999999987 5555554332
Q ss_pred -------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-Ee----ccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 766 -------NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL----SAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 766 -------~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l----~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
..|.+++|+|++.+|++++.|+.|++||+..++.+ .+ .+|.+.|++++|+|++.+|++|+.||.|+||
T Consensus 292 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW 371 (380)
T 3iz6_a 292 DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371 (380)
T ss_dssp SSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred cccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEE
Confidence 24889999999999999999999999999988776 33 5799999999999999999999999999999
Q ss_pred C
Q 003279 834 K 834 (834)
Q Consensus 834 d 834 (834)
+
T Consensus 372 ~ 372 (380)
T 3iz6_a 372 A 372 (380)
T ss_dssp E
T ss_pred e
Confidence 6
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.4e-39 Score=384.96 Aligned_cols=329 Identities=18% Similarity=0.280 Sum_probs=268.0
Q ss_pred ccCCCceEEeccCCCCeEEeecCCCCCCC------------------------------cccccccccCCCeeeeEEEEe
Q 003279 499 LTDMDRFVDDGSLDDNVESFLSPDDADPR------------------------------DRVGRSAEVGKGFTFTEFQLI 548 (834)
Q Consensus 499 ~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~------------------------------~~~~~~~~~~~g~~~~~~~~l 548 (834)
+.....++++|+.|++|++|+........ +..+.++.+..+. ....+
T Consensus 67 ~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~---~~~~l 143 (611)
T 1nr0_A 67 TSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT---SNGNL 143 (611)
T ss_dssp ECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC---BCBCC
T ss_pred ECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC---Cccee
Confidence 34445899999999999999764321100 0001111122221 23457
Q ss_pred cCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC
Q 003279 549 PASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 627 (834)
Q Consensus 549 ~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~ 627 (834)
.+|.+.|++++|+|++. +|++|+.|++|++||..+++++..+.+|...|++++|+|++++|++++.|++|+|||+.++.
T Consensus 144 ~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~ 223 (611)
T 1nr0_A 144 TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT 223 (611)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred cCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc
Confidence 89999999999999987 69999999999999999999999999999999999999999999999999999999998766
Q ss_pred ceeeeec-------cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-----------------------
Q 003279 628 YSLRTFT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----------------------- 677 (834)
Q Consensus 628 ~~i~~~~-------~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~----------------------- 677 (834)
. +..+. +|...|.+++|+|++. +|++++.|++|++||+.+++++..+.
T Consensus 224 ~-~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s 301 (611)
T 1nr0_A 224 K-TGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSIS 301 (611)
T ss_dssp E-EEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEE
T ss_pred E-eeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEe
Confidence 4 44442 7999999999999976 67799999999999999887655432
Q ss_pred ---------------------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE-e-----------------
Q 003279 678 ---------------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-Q----------------- 718 (834)
Q Consensus 678 ---------------------~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l-~----------------- 718 (834)
+...|.+++|+|++.+|++++.|+.|++||+.++.+...+ .
T Consensus 302 ~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l 381 (611)
T 1nr0_A 302 ANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 381 (611)
T ss_dssp TTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE
T ss_pred CCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcE
Confidence 3456899999999999999999999999999876443221 0
Q ss_pred ----------------------------------------------------------------CCCCCEEEEEEcCCCC
Q 003279 719 ----------------------------------------------------------------GHKNQVHSVCWNTSGE 734 (834)
Q Consensus 719 ----------------------------------------------------------------~h~~~I~sl~~spdg~ 734 (834)
.|...+.+++|+|||+
T Consensus 382 ~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~ 461 (611)
T 1nr0_A 382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ 461 (611)
T ss_dssp EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC
T ss_pred EEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC
Confidence 0234578899999999
Q ss_pred EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-CeEEE---eccCCCCe
Q 003279 735 YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE-NKTLT---LSAHDKLV 809 (834)
Q Consensus 735 ~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~-~~~~~---l~~h~~~V 809 (834)
+|++++ |++|++||+.++.. ..+.. ..|...|.+++|+|++.+|++++.|+.|++||+.+ ++... +..|...|
T Consensus 462 ~lasgs~D~~v~lwd~~~~~~-~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V 539 (611)
T 1nr0_A 462 FVAVGGQDSKVHVYKLSGASV-SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKV 539 (611)
T ss_dssp EEEEEETTSEEEEEEEETTEE-EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCE
T ss_pred EEEEeCCCCeEEEEEccCCce-eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccce
Confidence 999999 99999999987521 22333 67889999999999999999999999999999987 55543 23499999
Q ss_pred EEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 810 SSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 810 ~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.+++|+||+++||+|+.|++|+|||
T Consensus 540 ~~v~fspdg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 540 ACVSWSPDNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eEEEECCCCCEEEEEECCCcEEEEE
Confidence 9999999999999999999999996
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.2e-39 Score=350.67 Aligned_cols=284 Identities=18% Similarity=0.307 Sum_probs=254.2
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
...+++.+|.+.|++++|+|++++|++|+.||+|+|||++++..+..+..|...|.+++|+|++++|++|+.|++|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc-eeeEee-cCCCeeEEEEec-CCCEEEEEEc
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQMRFQP-RLGRILAAAI 699 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~-~i~~~~-~~~~i~~l~~sp-~g~~ll~~s~ 699 (834)
+.++.. +..+.+|...|.+++|+|++. +|++|+.|+.|++||++++. ....+. +...|.+++|+| ++..|++++.
T Consensus 84 ~~~~~~-~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 84 YNTGEK-VVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp TTTCCE-EEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred CCCCcE-EEEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 998764 778899999999999999976 67799999999999998874 444454 456799999999 5789999999
Q ss_pred CCeEEEEECCCCeEEEEEe-CCCCCEEEEEEcC--CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003279 700 ENYISILDVETQVCRLKLQ-GHKNQVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 775 (834)
Q Consensus 700 dg~I~iwDl~t~~~~~~l~-~h~~~I~sl~~sp--dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafsp 775 (834)
|+.|++||+++......+. +|...+..++|+| ++.+|++++ |++|++||++++ .++..+..|...|.+++|+|
T Consensus 162 D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~---~~~~~~~~h~~~v~~~~~~p 238 (304)
T 2ynn_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHP 238 (304)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECS
T ss_pred CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC---ccceeeCCCCCCEEEEEECC
Confidence 9999999998876655554 4668899999986 778999999 999999999987 78899999999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCC--EEEEEecCCcEE
Q 003279 776 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG--MVASASHDKCVK 831 (834)
Q Consensus 776 dg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~--~LaSgs~DG~I~ 831 (834)
++.+|++++.|+.|++||+.+++.+ .+..|...+.+++|+|++. +|++|+.||.+.
T Consensus 239 ~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~ 297 (304)
T 2ynn_A 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (304)
T ss_dssp SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence 9999999999999999999999887 6778899999999999886 688888777543
No 8
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.6e-39 Score=350.77 Aligned_cols=289 Identities=19% Similarity=0.334 Sum_probs=252.5
Q ss_pred CeeeeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCC-----CeEEEEeccCCCCeEEEEECCCCCEEEEE
Q 003279 539 GFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATS 612 (834)
Q Consensus 539 g~~~~~~~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~IWd~~t-----~~~~~~l~~h~~~I~~l~fspdg~~Latg 612 (834)
...+....++.+|.+.|++++|+|++ ++|++|+.|++|++|++.. +..+..+.+|...|.+++|+|++.+|++|
T Consensus 4 ~~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 83 (319)
T 3frx_A 4 NEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83 (319)
T ss_dssp CEEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ceEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEE
Confidence 34566778899999999999999965 8999999999999999863 34567889999999999999999999999
Q ss_pred eCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecC--
Q 003279 613 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR-- 690 (834)
Q Consensus 613 s~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~-- 690 (834)
+.|++|+|||+.+++ .+..+.+|...|.+++|+|++. +|++++.|+.|++||++.........+...+.++.|.|.
T Consensus 84 s~D~~v~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~ 161 (319)
T 3frx_A 84 SWDKTLRLWDVATGE-TYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEK 161 (319)
T ss_dssp ETTSEEEEEETTTTE-EEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC--
T ss_pred eCCCEEEEEECCCCC-eeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCC
Confidence 999999999999865 4788899999999999999976 677999999999999985544444446677999999985
Q ss_pred ----CCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC
Q 003279 691 ----LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 765 (834)
Q Consensus 691 ----g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~ 765 (834)
+..+++++.|+.|++||+++.+....+.+|...|.+++|+|++.+|++++ |+.|+|||+.++ +++..+.. .
T Consensus 162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~---~~~~~~~~-~ 237 (319)
T 3frx_A 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---KAMYTLSA-Q 237 (319)
T ss_dssp ----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-C
T ss_pred CCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEecC-C
Confidence 44899999999999999999999999999999999999999999999999 999999999987 66666664 4
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE-e--------ccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 766 NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-L--------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 766 ~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~-l--------~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
..|.+++|+|++.+|++++. +.+++|++.....+. + ..|...|.+++|+|||++|++|+.||.|+|||
T Consensus 238 ~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 238 DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp SCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 68999999999998887765 469999998876652 2 23567899999999999999999999999996
No 9
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.7e-39 Score=354.63 Aligned_cols=292 Identities=25% Similarity=0.432 Sum_probs=250.2
Q ss_pred eeEEEEecCCCC-CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE---EeccCCCCeEEEEECCCCCEEEEEeCCCe
Q 003279 542 FTEFQLIPASTS-KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSPSLSRLATSSADRT 617 (834)
Q Consensus 542 ~~~~~~l~gH~~-~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~---~l~~h~~~I~~l~fspdg~~Latgs~Dg~ 617 (834)
+..+..+.+|.+ .|++++|+|+|++||+|+.|++|+|||+.++.... ...+|...|.+++|+|++++|++|+.|++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 456788999998 99999999999999999999999999998876432 23689999999999999999999999999
Q ss_pred EEEEecCCCCc-eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce---eeEee-cCCCeeEEEEecCCC
Q 003279 618 VRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFK-CQSGATQMRFQPRLG 692 (834)
Q Consensus 618 I~IWDl~s~~~-~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~---i~~~~-~~~~i~~l~~sp~g~ 692 (834)
|+|||+..... .+..+.+|...|.+++|+|++. +|++|+.|+.|++||++++.. +..+. +...|.+++|+|++.
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 163 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence 99999987653 4678889999999999999976 777999999999999987643 33443 456799999999999
Q ss_pred EEEEEEcCCeEEEEECCCCe--EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC------------cee
Q 003279 693 RILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK------------GEC 757 (834)
Q Consensus 693 ~ll~~s~dg~I~iwDl~t~~--~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~------------~~~ 757 (834)
+|++++.|+.|++||++++. +...+.+|...|.+++|+|++.+|++++ |++|+|||...... ..+
T Consensus 164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~ 243 (345)
T 3fm0_A 164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKC 243 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEE
T ss_pred EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccce
Confidence 99999999999999998874 5578889999999999999999999999 99999999743221 123
Q ss_pred EEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe--------EE--EeccCCCCeEEEEEeCCC-CEEEEEe
Q 003279 758 IHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------TL--TLSAHDKLVSSLAASTVN-GMVASAS 825 (834)
Q Consensus 758 i~~~~~-~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~--------~~--~l~~h~~~V~~lafspdg-~~LaSgs 825 (834)
+..+.. |...|.+++|+|++..|++++.|+.|++|+...+. .. ...+|...|++++|+|++ .+||+|+
T Consensus 244 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s 323 (345)
T 3fm0_A 244 ICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS 323 (345)
T ss_dssp EEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE
T ss_pred eEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC
Confidence 444444 77899999999999999999999999999987642 11 235799999999999998 4999999
Q ss_pred cCCcEEEeC
Q 003279 826 HDKCVKIWK 834 (834)
Q Consensus 826 ~DG~I~IWd 834 (834)
.||.|+|||
T Consensus 324 ~Dg~v~~W~ 332 (345)
T 3fm0_A 324 DDGEVAFWK 332 (345)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEEE
Confidence 999999996
No 10
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.1e-39 Score=384.02 Aligned_cols=319 Identities=21% Similarity=0.324 Sum_probs=267.2
Q ss_pred CceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEE
Q 003279 478 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 557 (834)
Q Consensus 478 ~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~s 557 (834)
....+.|++++. ..+++|+.|++|++|.... ......+.+|.+.|.+
T Consensus 149 ~v~~v~f~p~~~--------------~~l~s~s~D~~v~lwd~~~-------------------~~~~~~l~~H~~~V~~ 195 (611)
T 1nr0_A 149 AMNSVDFKPSRP--------------FRIISGSDDNTVAIFEGPP-------------------FKFKSTFGEHTKFVHS 195 (611)
T ss_dssp CEEEEEECSSSS--------------CEEEEEETTSCEEEEETTT-------------------BEEEEEECCCSSCEEE
T ss_pred CceEEEECCCCC--------------eEEEEEeCCCeEEEEECCC-------------------CeEeeeeccccCceEE
Confidence 455666766541 3589999999999995321 1345678899999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-------cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCce-
Q 003279 558 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS- 629 (834)
Q Consensus 558 l~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-------~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~- 629 (834)
++|+|||++||+|+.|++|+|||+.+++.+..+. +|.+.|.+++|+|++++|++++.|++|+|||+.+++..
T Consensus 196 v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~ 275 (611)
T 1nr0_A 196 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK 275 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred EEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee
Confidence 9999999999999999999999999999988884 79999999999999999999999999999999865421
Q ss_pred -----------------------------------------eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 003279 630 -----------------------------------------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 668 (834)
Q Consensus 630 -----------------------------------------i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~ 668 (834)
...+.+|...|.+++|+|++. +|++++.|+.|++||+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~ 354 (611)
T 1nr0_A 276 TIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDIS 354 (611)
T ss_dssp EEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT
T ss_pred eecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECC
Confidence 234457999999999999977 66799999999999998
Q ss_pred CCceeeEe------------------------------------------------------------------------
Q 003279 669 NGSCAGVF------------------------------------------------------------------------ 676 (834)
Q Consensus 669 s~~~i~~~------------------------------------------------------------------------ 676 (834)
++.+...+
T Consensus 355 ~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v 434 (611)
T 1nr0_A 355 TGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 434 (611)
T ss_dssp TCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEE
T ss_pred CCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceE
Confidence 76543221
Q ss_pred -----------ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE--EEEEeCCCCCEEEEEEcCCCCEEEEEe-CC
Q 003279 677 -----------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DE 742 (834)
Q Consensus 677 -----------~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~--~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg 742 (834)
.+...+.+++|+|++.+|++++.|+.|++||+.++.. +.. .+|...|++++|+|+|++|++++ |+
T Consensus 435 ~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~ 513 (611)
T 1nr0_A 435 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSR 513 (611)
T ss_dssp EEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCC
Confidence 0123467899999999999999999999999988653 233 57999999999999999999999 99
Q ss_pred eEEEEEcCCCCCceeEEE--eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe--E-EEeccC-CCCeEEEEEeC
Q 003279 743 LVRVWSIGSGSKGECIHE--LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--T-LTLSAH-DKLVSSLAAST 816 (834)
Q Consensus 743 ~I~IwDl~s~~~~~~i~~--~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~--~-~~l~~h-~~~V~~lafsp 816 (834)
+|++||+.+.. +.+.. +..|...|.+++|+|++++|++++.|++|++||+.++. . ..+.+| ...|.+++|+|
T Consensus 514 ~v~~w~~~~~~--~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~ 591 (611)
T 1nr0_A 514 KVIPYSVANNF--ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN 591 (611)
T ss_dssp CEEEEEGGGTT--EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEE
T ss_pred CEEEEEcCCCC--ceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcC
Confidence 99999998731 33332 33488999999999999999999999999999998764 2 355688 89999999999
Q ss_pred CCCEEEEEecCCcEEEeC
Q 003279 817 VNGMVASASHDKCVKIWK 834 (834)
Q Consensus 817 dg~~LaSgs~DG~I~IWd 834 (834)
++. |++++.||+|+|||
T Consensus 592 d~~-l~s~~~D~~i~lW~ 608 (611)
T 1nr0_A 592 ETT-IVSAGQDSNIKFWN 608 (611)
T ss_dssp TTE-EEEEETTSCEEEEE
T ss_pred CCE-EEEecCCCCEEEEe
Confidence 998 99999999999996
No 11
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=7.1e-39 Score=359.66 Aligned_cols=282 Identities=28% Similarity=0.455 Sum_probs=251.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCC------------------CeEEEEECCCCCEEEE
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------------------WITDVRFSPSLSRLAT 611 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~------------------~I~~l~fspdg~~Lat 611 (834)
+|.+.|+|++|+|||++||+|+ ++.++||++.+++.+..+..|.. .|++++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999986 68999999999999888765542 4999999999999999
Q ss_pred EeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEec-C
Q 003279 612 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP-R 690 (834)
Q Consensus 612 gs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp-~ 690 (834)
|+.|++|+|||+.+++ .+..+.+|...|.+++|+|++. +|++++.|+.|++||++++++...+.+...+.+++|+| +
T Consensus 141 ~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 141 GAEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 218 (393)
T ss_dssp EETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred EcCCCeEEEEECCCCc-EEEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCC
Confidence 9999999999999765 4778899999999999999977 56799999999999999999999998889999999999 8
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEE-------eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC--------
Q 003279 691 LGRILAAAIENYISILDVETQVCRLKL-------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-------- 754 (834)
Q Consensus 691 g~~ll~~s~dg~I~iwDl~t~~~~~~l-------~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~-------- 754 (834)
+.+|++++.|+.|++||++++..+..+ .+|...|.+++|+|++.+|++++ |+.|++||+++...
T Consensus 219 ~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 298 (393)
T 1erj_A 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298 (393)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC
Confidence 899999999999999999999887776 57899999999999999999999 99999999986421
Q ss_pred -ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeC------CCCEEEEEec
Q 003279 755 -GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAST------VNGMVASASH 826 (834)
Q Consensus 755 -~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafsp------dg~~LaSgs~ 826 (834)
..+...+..|...|.+++|++++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|++ ++.+||+|+.
T Consensus 299 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~ 378 (393)
T 1erj_A 299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG 378 (393)
T ss_dssp --CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEET
T ss_pred CCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECC
Confidence 2456677889999999999999999999999999999999998877 6779999999999986 6789999999
Q ss_pred CCcEEEeC
Q 003279 827 DKCVKIWK 834 (834)
Q Consensus 827 DG~I~IWd 834 (834)
||+|+|||
T Consensus 379 Dg~i~iW~ 386 (393)
T 1erj_A 379 DCKARIWK 386 (393)
T ss_dssp TSEEEEEE
T ss_pred CCcEEECc
Confidence 99999996
No 12
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.8e-38 Score=340.57 Aligned_cols=288 Identities=24% Similarity=0.456 Sum_probs=258.7
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 003279 542 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 621 (834)
Q Consensus 542 ~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 621 (834)
+.....+.+|.+.|++++|+|++++||+|+.||.|+||++.+++....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcC
Q 003279 622 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 622 Dl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~d 700 (834)
|+.++. .+..+.+|...|.+++|+|++. +|++++.|+.|++||+++++++..+.. ...+.+++|+|++.++++++.|
T Consensus 93 d~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (312)
T 4ery_A 93 DVSSGK-CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170 (312)
T ss_dssp ETTTCC-EEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ECCCCc-EEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 999866 4778889999999999999976 677999999999999999998888764 5679999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEe-CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE---EEEEeC
Q 003279 701 NYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH---SCVFHP 775 (834)
Q Consensus 701 g~I~iwDl~t~~~~~~l~-~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~---svafsp 775 (834)
+.|++||+++++.+..+. .+...+.+++|+|++.+|++++ |+.|++||++++ .++..+..|...+. .....+
T Consensus 171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
T 4ery_A 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCIFANFSVT 247 (312)
T ss_dssp SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT---EEEEEECSSCCSSSCCCEEEECS
T ss_pred CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC---cEEEEEEecCCceEEEEEEEEeC
Confidence 999999999998877764 4667899999999999999999 999999999987 67777777665432 233346
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEe--cCCcEEEeC
Q 003279 776 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 834 (834)
Q Consensus 776 dg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs--~DG~I~IWd 834 (834)
++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|+|++.+|++++ .|+.|+||+
T Consensus 248 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 248 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309 (312)
T ss_dssp SSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred CCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence 7889999999999999999999877 6779999999999999999999997 699999995
No 13
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.7e-38 Score=347.78 Aligned_cols=287 Identities=18% Similarity=0.355 Sum_probs=243.9
Q ss_pred eeeEEEEecCCCCCeEEEEE-----cC-CCCEEEEEeCCCcEEEEeCCC-------CeEEEEeccCCCCeEEEEECCCCC
Q 003279 541 TFTEFQLIPASTSKVESCHF-----SP-DGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLS 607 (834)
Q Consensus 541 ~~~~~~~l~gH~~~V~sl~f-----Sp-dg~~Lasgs~Dg~I~IWd~~t-------~~~~~~l~~h~~~I~~l~fspdg~ 607 (834)
.+.....+.+|.+.|++++| ++ |+++||+|+.|++|+|||+.+ +.....+.+|...|.+++|+|++.
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~ 89 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC 89 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence 34567789999999999999 77 999999999999999999874 346678899999999999999999
Q ss_pred EEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEe---ecCCCeeE
Q 003279 608 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KCQSGATQ 684 (834)
Q Consensus 608 ~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~---~~~~~i~~ 684 (834)
+|++++.|++|++||+.++. .+..+.+|...|.+++|+|++. +|++++.|+.|++||+......... .+...+.+
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 167 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGT-TYKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSC 167 (343)
T ss_dssp EEEEEETTSEEEEEETTSSC-EEEEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEE
T ss_pred EEEEEcCCCcEEEEECCCCc-EEEEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCCceeeeecccCCCceeee
Confidence 99999999999999999865 4778889999999999999977 5668999999999999844333222 24567999
Q ss_pred EEEecCC----------CEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC
Q 003279 685 MRFQPRL----------GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 753 (834)
Q Consensus 685 l~~sp~g----------~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~ 753 (834)
++|+|++ .+|++++.|+.|++|| ........+.+|...|.+++|+|++++|++++ |+.|++||+....
T Consensus 168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~ 246 (343)
T 2xzm_R 168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT 246 (343)
T ss_dssp EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS
T ss_pred eeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 9999986 7899999999999999 45677788899999999999999999999999 9999999995542
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE---Eec-----------cCCCCeEEEEEeCCCC
Q 003279 754 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---TLS-----------AHDKLVSSLAASTVNG 819 (834)
Q Consensus 754 ~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~---~l~-----------~h~~~V~~lafspdg~ 819 (834)
.....+ .+...|.+++|+|++.+++ ++.|+.|++||+.+++.. .+. +|...|.+++|+|+++
T Consensus 247 --~~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 322 (343)
T 2xzm_R 247 --YPQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK 322 (343)
T ss_dssp --SCSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC
T ss_pred --ccceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCC
Confidence 222233 2456799999999998665 556888999999876533 222 6788899999999999
Q ss_pred EEEEEecCCcEEEeC
Q 003279 820 MVASASHDKCVKIWK 834 (834)
Q Consensus 820 ~LaSgs~DG~I~IWd 834 (834)
+|++|+.||.|+||+
T Consensus 323 ~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 323 KLFAGFTDGVIRTFS 337 (343)
T ss_dssp CEEEEETTSEEEEEE
T ss_pred eEEEecCCceEEEEE
Confidence 999999999999996
No 14
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.5e-37 Score=364.16 Aligned_cols=305 Identities=27% Similarity=0.445 Sum_probs=269.4
Q ss_pred cCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003279 500 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 579 (834)
Q Consensus 500 ~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IW 579 (834)
......+++++.|+.+++|.... ..+..+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 271 ~~d~~~l~~~~~d~~i~~w~~~~--------------------~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w 330 (577)
T 2ymu_A 271 RPDGQTIASASDDKTVKLWNRNG--------------------QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330 (577)
T ss_dssp CTTSSEEEEEETTSCEEEEETTS--------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cCCCCEEEEEeCCCEEEEEeCCC--------------------cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Confidence 33457889999999999995321 1345678999999999999999999999999999999
Q ss_pred eCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC
Q 003279 580 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 659 (834)
Q Consensus 580 d~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D 659 (834)
|... ..+..+.+|...|.+++|+|++++|++++.|+.|++||... ..+..+.+|...|.+++|+|++. +|++++.|
T Consensus 331 ~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~--~~~~~~~~~~~~v~~~~~s~dg~-~l~~~~~d 406 (577)
T 2ymu_A 331 NRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQ-TIASASDD 406 (577)
T ss_dssp ETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC--CEEEEEECCSSCEEEEEECTTSS-CEEEEETT
T ss_pred eCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC--CEEEEecCCCCCeEEEEECCCCC-EEEEEeCC
Confidence 9765 55667889999999999999999999999999999999653 34778889999999999999987 56688999
Q ss_pred CcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 003279 660 SEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 738 (834)
Q Consensus 660 g~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Las 738 (834)
+.|++||.. ++.+..+. +...|.+++|+|++.+|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++
T Consensus 407 ~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las 484 (577)
T 2ymu_A 407 KTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS 484 (577)
T ss_dssp SEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEE
T ss_pred CEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 999999965 55555554 5677999999999999999999999999996 56778888999999999999999999999
Q ss_pred Ee-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCC
Q 003279 739 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV 817 (834)
Q Consensus 739 gs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspd 817 (834)
++ |+.|++||.. + +++..+..|...|++++|+|++++|++++.|+.|++||........+.+|.+.|++++|+||
T Consensus 485 ~~~d~~i~iw~~~-~---~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~d 560 (577)
T 2ymu_A 485 ASDDKTVKLWNRN-G---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD 560 (577)
T ss_dssp EETTSEEEEEETT-S---CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTT
T ss_pred EeCCCEEEEEcCC-C---CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCC
Confidence 99 9999999963 3 67888999999999999999999999999999999999765555588899999999999999
Q ss_pred CCEEEEEecCCcEEEeC
Q 003279 818 NGMVASASHDKCVKIWK 834 (834)
Q Consensus 818 g~~LaSgs~DG~I~IWd 834 (834)
+++|+|++.||+|+|||
T Consensus 561 g~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 561 GQTIASASSDKTVKLWN 577 (577)
T ss_dssp SSCEEEEETTSCEEEEC
T ss_pred CCEEEEEeCCCEEEEeC
Confidence 99999999999999998
No 15
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.1e-38 Score=350.35 Aligned_cols=279 Identities=15% Similarity=0.210 Sum_probs=235.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-----------CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 618 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t-----------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I 618 (834)
.|...|.+++|+|||++|++++ |+++++||... .........|...|.+++|+|++ .|++|+.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 5667799999999999999887 77888886321 01111222466789999999985 78899999999
Q ss_pred EEEecCCCCcee---eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCC-E
Q 003279 619 RVWDTENPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG-R 693 (834)
Q Consensus 619 ~IWDl~s~~~~i---~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~-~ 693 (834)
+|||+.+++... ....+|...|++++|+|++. +|++|+.|+.|++||+++++++..+.. ...|.+++|++++. .
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence 999999876422 23458999999999999976 677999999999999999999988874 67799999999875 6
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEe--CCCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003279 694 ILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 769 (834)
Q Consensus 694 ll~~s~dg~I~iwDl~t~~~~~~l~--~h~~~I~sl~~spd-g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 769 (834)
|++++.|+.|++||++++++...+. .|...+.+++|+|+ +.+|++++ |+.|+|||++++ +++..+..|...|.
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~---~~~~~~~~h~~~v~ 261 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST---SCVLSSAVHSQCVT 261 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-----CCEEEECCSSCEE
T ss_pred eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC---cEEEEEcCCCCCEE
Confidence 7889999999999999998877764 35667999999985 56888888 999999999988 67888999999999
Q ss_pred EEEEeCCC-CEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCC-EEEEEecCCcEEEeC
Q 003279 770 SCVFHPTF-PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 834 (834)
Q Consensus 770 svafspdg-~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~-~LaSgs~DG~I~IWd 834 (834)
+++|+|++ .+|++++.|++|+|||+.+++++.+.+|.+.|++++|+|+++ +|++|+.||+|++|+
T Consensus 262 ~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 262 GLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp EEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 99999998 578999999999999999999999999999999999999986 678999999999995
No 16
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-38 Score=342.22 Aligned_cols=289 Identities=21% Similarity=0.335 Sum_probs=237.6
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eEEEEe-cc-CCCCeEEEEECCCCCEEEEEeCCCe
Q 003279 542 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTL-EE-HTQWITDVRFSPSLSRLATSSADRT 617 (834)
Q Consensus 542 ~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~--~~~~~l-~~-h~~~I~~l~fspdg~~Latgs~Dg~ 617 (834)
+..+..+.+|.+.|++++|+++ +||+|+.|++|+|||+.++ ..+..+ .+ |...|.+++|+|++.+|++++.|++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 3457788999999999999988 9999999999999999874 455566 44 9999999999999999999999999
Q ss_pred EEEEecCCC------CceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC----ceeeEee-cCCCeeEEE
Q 003279 618 VRVWDTENP------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK-CQSGATQMR 686 (834)
Q Consensus 618 I~IWDl~s~------~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~----~~i~~~~-~~~~i~~l~ 686 (834)
|+|||+... ...+..+.+|...|.+++|+|++. +|++|+.|+.|++||++.. +++..+. +...|.+++
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 999998532 124567889999999999999976 6779999999999999532 4455554 456799999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCC--eEEEEEeCCCCCEEEEEEcCC--CCEEEEEe-CCeEEEEEcCCCCCc-----e
Q 003279 687 FQPRLGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTS--GEYLASVS-DELVRVWSIGSGSKG-----E 756 (834)
Q Consensus 687 ~sp~g~~ll~~s~dg~I~iwDl~t~--~~~~~l~~h~~~I~sl~~spd--g~~Lasgs-Dg~I~IwDl~s~~~~-----~ 756 (834)
|+|++.+|++++.|+.|++||+.++ +++..+.+|...|.+++|+|+ +.+|++++ |++|++||+..+... .
T Consensus 161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence 9999999999999999999999876 678889999999999999998 77899988 999999999754211 2
Q ss_pred eEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe--EE--EeccCCC-CeEEEEEeC--CCCEEEEEecCC
Q 003279 757 CIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--TL--TLSAHDK-LVSSLAAST--VNGMVASASHDK 828 (834)
Q Consensus 757 ~i~~~~~-~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~--~~--~l~~h~~-~V~~lafsp--dg~~LaSgs~DG 828 (834)
+...+.. |...|.+++|++++ +|++++.|+.|+|||..+++ .+ ....|.. .|.+++|+| ++.+||+|+.||
T Consensus 241 ~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 241 CEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp EEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred EeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence 3444444 78899999999765 79999999999999998874 23 2357877 899999999 688999999999
Q ss_pred cEEEeC
Q 003279 829 CVKIWK 834 (834)
Q Consensus 829 ~I~IWd 834 (834)
.|+|||
T Consensus 320 ~v~~W~ 325 (330)
T 2hes_X 320 IVNFWS 325 (330)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 999996
No 17
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.2e-38 Score=353.51 Aligned_cols=281 Identities=13% Similarity=0.170 Sum_probs=237.3
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEeCCCCeEE----EEeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 003279 549 PASTSKVESCHFSPDGKLLATGGH------DKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTV 618 (834)
Q Consensus 549 ~gH~~~V~sl~fSpdg~~Lasgs~------Dg~I~IWd~~t~~~~----~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I 618 (834)
.+|...|++++|+|||++||+|+. |+.|++|+..++... ....+|...|++++|+|++. +++++.||+|
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v 117 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAV 117 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence 479999999999999999999997 778999998776543 33457889999999999975 5677899999
Q ss_pred EEEecCCCCcee---eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCC-E
Q 003279 619 RVWDTENPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG-R 693 (834)
Q Consensus 619 ~IWDl~s~~~~i---~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~-~ 693 (834)
+|||+.+++... ....+|...|++++|+|++. +|++++.|+.|++||+++++++..+.. ...|.+++|++++. .
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~ 196 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT-QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTI 196 (357)
T ss_dssp EEC--------CCCCEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSC
T ss_pred EEeeccccceeEEEeeccCCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCce
Confidence 999998765322 23457999999999999976 667999999999999999999988874 56799999999875 7
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEe--CCCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003279 694 ILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 769 (834)
Q Consensus 694 ll~~s~dg~I~iwDl~t~~~~~~l~--~h~~~I~sl~~spd-g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 769 (834)
+++++.|+.|++||++++++...+. .|...+.+++|+|+ +.+|++++ |+.|++||++++ .++..+..|...|.
T Consensus 197 ~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~---~~~~~~~~~~~~v~ 273 (357)
T 4g56_B 197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP---DSAQTSAVHSQNIT 273 (357)
T ss_dssp EEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG---GGCEEECCCSSCEE
T ss_pred eeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC---cEeEEEeccceeEE
Confidence 8899999999999999987665543 46778999999997 46788887 999999999987 67788889999999
Q ss_pred EEEEeCCC-CEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeC-CCCEEEEEecCCcEEEeC
Q 003279 770 SCVFHPTF-PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK 834 (834)
Q Consensus 770 svafspdg-~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafsp-dg~~LaSgs~DG~I~IWd 834 (834)
+++|+|++ .+|++++.|++|+|||+.+++++...+|.+.|++|+|+| ++.+|++|+.||+|+|||
T Consensus 274 ~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 274 GLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp EEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence 99999987 578899999999999999999998889999999999998 789999999999999996
No 18
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-37 Score=336.23 Aligned_cols=284 Identities=17% Similarity=0.249 Sum_probs=254.5
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEec
Q 003279 544 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 623 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 623 (834)
....+.+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC-----CcEEEEECCCCcee-----------eEee-cCC--CeeE
Q 003279 624 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCA-----------GVFK-CQS--GATQ 684 (834)
Q Consensus 624 ~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~lwDl~s~~~i-----------~~~~-~~~--~i~~ 684 (834)
.++.. +..+. +...|.+++|+|++. ++++++.+ +.|++||+...... ..+. +.. .+.+
T Consensus 104 ~~~~~-~~~~~-~~~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (369)
T 3zwl_B 104 SNGQC-VATWK-SPVPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180 (369)
T ss_dssp TTCCE-EEEEE-CSSCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred CCCcE-EEEee-cCCCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence 98764 55555 889999999999987 55577777 99999999866432 1222 222 7999
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCC-CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee
Q 003279 685 MRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS 762 (834)
Q Consensus 685 l~~sp~g~~ll~~s~dg~I~iwDl~t-~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~ 762 (834)
++|+|++..+++++.|+.|++||+++ ...+..+..|...|.+++|+|++.+|++++ |+.|++||++++ ..+..+.
T Consensus 181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~ 257 (369)
T 3zwl_B 181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL---QVLKKYE 257 (369)
T ss_dssp EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEE
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC---ceeeeec
Confidence 99999999999999999999999999 788999999999999999999999999998 999999999987 5555555
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCC--------------eEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecC
Q 003279 763 CTGNKFHSCVFHPTFPSLLVIGCYE--------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 763 ~~~~~I~svafspdg~~L~sgs~dg--------------~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~D 827 (834)
+...+..++|+|++.++++++.++ .|++||+.+++.+ .+.+|...|.+++|+|++++|++++.|
T Consensus 258 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 336 (369)
T 3zwl_B 258 -TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGED 336 (369)
T ss_dssp -CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred -CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCC
Confidence 678899999999999999999988 8999999998887 677899999999999999999999999
Q ss_pred CcEEEeC
Q 003279 828 KCVKIWK 834 (834)
Q Consensus 828 G~I~IWd 834 (834)
|.|+|||
T Consensus 337 g~v~iw~ 343 (369)
T 3zwl_B 337 GFIRLHH 343 (369)
T ss_dssp SEEEEEE
T ss_pred CeEEEEE
Confidence 9999996
No 19
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.6e-36 Score=355.22 Aligned_cols=303 Identities=26% Similarity=0.446 Sum_probs=269.9
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 581 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~ 581 (834)
...++++++.|+.+++|.... ..+..+.+|...|.+++|+|++++|++++.|+.|++||.
T Consensus 232 dg~~l~~~~~d~~i~~w~~~~--------------------~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~ 291 (577)
T 2ymu_A 232 DGQTIASASDDKTVKLWNRNG--------------------QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR 291 (577)
T ss_dssp TSSCEEEEETTSCEEEECTTS--------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCCEEEEEeCCCEEEEEeCCC--------------------CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC
Confidence 346789999999999995311 235677899999999999999999999999999999996
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCc
Q 003279 582 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 661 (834)
Q Consensus 582 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 661 (834)
+++.+..+.+|...|.+++|+|++.+|++++.|++|++||+... .+..+.+|...|.+++|+|++. ++++++.|+.
T Consensus 292 -~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~--~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~ 367 (577)
T 2ymu_A 292 -NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--HLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKT 367 (577)
T ss_dssp -TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--EEEEECCCSSCEEEEEECTTSS-EEEEEETTSE
T ss_pred -CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC--eeEEEeCCCCCEEEEEECCCCC-EEEEEeCCCE
Confidence 46778889999999999999999999999999999999998753 3677889999999999999977 6678999999
Q ss_pred EEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 003279 662 IRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 740 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs 740 (834)
|++||.. ++.+..+. +...|.+++|+|++.+|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++
T Consensus 368 v~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 445 (577)
T 2ymu_A 368 VKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASAS 445 (577)
T ss_dssp EEEEETT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEcCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEc
Confidence 9999965 55665555 4677999999999999999999999999995 5677888899999999999999999999999
Q ss_pred -CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCC
Q 003279 741 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG 819 (834)
Q Consensus 741 -Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~ 819 (834)
|+.|++||+.. ..+..+..|...|.+++|+|++++|++++.|+.|++||........+.+|...|++++|+|+++
T Consensus 446 ~d~~v~~w~~~~----~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~ 521 (577)
T 2ymu_A 446 DDKTVKLWNRNG----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQ 521 (577)
T ss_dssp TTSEEEEEETTS----CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSS
T ss_pred CCCEEEEEECCC----CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCC
Confidence 99999999643 5777888999999999999999999999999999999976555558889999999999999999
Q ss_pred EEEEEecCCcEEEeC
Q 003279 820 MVASASHDKCVKIWK 834 (834)
Q Consensus 820 ~LaSgs~DG~I~IWd 834 (834)
+||+++.||.|+|||
T Consensus 522 ~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 522 TIASASDDKTVKLWN 536 (577)
T ss_dssp CEEEEETTSEEEEEC
T ss_pred EEEEEECcCEEEEEe
Confidence 999999999999997
No 20
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.1e-37 Score=334.82 Aligned_cols=271 Identities=20% Similarity=0.291 Sum_probs=248.5
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
..++++|+.|+.|++|..... .......+.+|...|.+++|++++.++++++.|++|+|||+.
T Consensus 48 ~~~l~tgs~D~~v~vW~~~~~-----------------~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~ 110 (321)
T 3ow8_A 48 SETVVTGSLDDLVKVWKWRDE-----------------RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110 (321)
T ss_dssp -CEEEEEETTSCEEEEEEETT-----------------EEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred CCEEEEEcCCCCEEEEECCCC-----------------CeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 468999999999999965322 123345688999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 003279 583 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 662 (834)
Q Consensus 583 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 662 (834)
+++.+..+..|...|.+++|+|++++|++++.|+.|++||+.++.. ...+..|...|.+++|+|++. +|++++.|+.|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~-~~~~~~~~~~v~~~~~spdg~-~lasg~~dg~i 188 (321)
T 3ow8_A 111 NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK-EYSLDTRGKFILSIAYSPDGK-YLASGAIDGII 188 (321)
T ss_dssp TTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE-EEEEECSSSCEEEEEECTTSS-EEEEEETTSCE
T ss_pred CCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce-eEEecCCCceEEEEEECCCCC-EEEEEcCCCeE
Confidence 9999999999999999999999999999999999999999998764 667778899999999999977 67799999999
Q ss_pred EEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-
Q 003279 663 RYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 740 (834)
Q Consensus 663 ~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs- 740 (834)
++||+++++++..+.. ...|.+++|+|++.+|++++.|+.|++||++++.....+.+|...|.+++|+|++.+|++++
T Consensus 189 ~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 268 (321)
T 3ow8_A 189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS 268 (321)
T ss_dssp EEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence 9999999999888874 56799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003279 741 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 741 Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
|++|+|||+.++ .++..+..|...|.+++|+|++.+|++++.|+.|+|||+.
T Consensus 269 D~~v~iwd~~~~---~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 269 DKSVKVWDVGTR---TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCcEEEEeCCCC---EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999987 8888999999999999999999999999999999999963
No 21
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=8.6e-37 Score=330.16 Aligned_cols=279 Identities=18% Similarity=0.255 Sum_probs=251.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE---EEec--cCCCCeEEEEECCCCCEEEEEeCCCeEEEEec
Q 003279 549 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK---STLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDT 623 (834)
Q Consensus 549 ~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~---~~l~--~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 623 (834)
.+|.+.|++++|+|++++|++++ ||.|++||+.+++.. ..+. .|...|.+++|+|++++|++++.|+.|++||+
T Consensus 48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~ 126 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence 48999999999999999999999 999999999876432 3333 79999999999999999999999999999999
Q ss_pred CCCCc-eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCC
Q 003279 624 ENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIEN 701 (834)
Q Consensus 624 ~s~~~-~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg 701 (834)
.++.. ....+..|...|.+++|+|++. ++++++.||.|++||+++++.+..+. +...+.+++|+|++..+++++.|+
T Consensus 127 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 205 (337)
T 1gxr_A 127 AAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN 205 (337)
T ss_dssp CCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCcceeeecccCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCC
Confidence 97653 3566778999999999999876 66688999999999999999888887 467799999999999999999999
Q ss_pred eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 003279 702 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 780 (834)
Q Consensus 702 ~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L 780 (834)
.|++||+++++.+..+. +...+.+++|+|++.+|++++ |+.|++||+.+.. ...+..|...|.+++|+|++++|
T Consensus 206 ~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l 280 (337)
T 1gxr_A 206 TVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD----KYQLHLHESCVLSLKFAYCGKWF 280 (337)
T ss_dssp EEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC----EEEECCCSSCEEEEEECTTSSEE
T ss_pred cEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC----eEEEcCCccceeEEEECCCCCEE
Confidence 99999999999888876 788999999999999999999 9999999998863 34567788999999999999999
Q ss_pred EEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 781 LVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 781 ~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++++.|+.|++||+.+++.+....|...|.+++|+|++++|++++.||.|+|||
T Consensus 281 ~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 281 VSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred EEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 999999999999999999887778999999999999999999999999999996
No 22
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.8e-37 Score=347.93 Aligned_cols=280 Identities=23% Similarity=0.440 Sum_probs=253.2
Q ss_pred CCceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeE
Q 003279 477 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 556 (834)
Q Consensus 477 ~~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~ 556 (834)
.+..++.|++++ .++++|+.|+.|++|...... ....+.+|.+.|.
T Consensus 109 ~~V~~~~~~p~~---------------~~l~s~s~Dg~i~vwd~~~~~-------------------~~~~l~~h~~~V~ 154 (410)
T 1vyh_C 109 SPVTRVIFHPVF---------------SVMVSASEDATIKVWDYETGD-------------------FERTLKGHTDSVQ 154 (410)
T ss_dssp SCEEEEEECSSS---------------SEEEEEESSSCEEEEETTTCC-------------------CCEEECCCSSCEE
T ss_pred CcEEEEEEcCCC---------------CEEEEEeCCCeEEEEECCCCc-------------------EEEEEeccCCcEE
Confidence 356677777655 689999999999999754321 2457789999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccC
Q 003279 557 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 636 (834)
Q Consensus 557 sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h 636 (834)
+++|+|++++|++|+.|++|+|||+.+++++..+.+|...|.+++|+|++.+|++|+.|++|++||+.++. ++..+.+|
T Consensus 155 ~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~-~~~~~~~h 233 (410)
T 1vyh_C 155 DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGH 233 (410)
T ss_dssp EEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECC
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-EEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999865 47888999
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecC--------------------CCEEE
Q 003279 637 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPR--------------------LGRIL 695 (834)
Q Consensus 637 ~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~--------------------g~~ll 695 (834)
...|.+++|++++. ++++|+.|+.|++||+.++++...+. +...|.+++|+|+ +.+|+
T Consensus 234 ~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 312 (410)
T 1vyh_C 234 REWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL 312 (410)
T ss_dssp SSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE
T ss_pred CccEEEEEECCCCC-EEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEE
Confidence 99999999999976 77799999999999999999888775 4567999999996 66899
Q ss_pred EEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEe
Q 003279 696 AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 774 (834)
Q Consensus 696 ~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafs 774 (834)
+++.|+.|++||++++.++..+.+|...|++++|+|++.+|++++ |+.|+|||+.++ .++..+..|...|.+++|+
T Consensus 313 sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~---~~~~~~~~h~~~v~~l~~~ 389 (410)
T 1vyh_C 313 SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK---RCMKTLNAHEHFVTSLDFH 389 (410)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS---CCCEEEECCSSCEEEEEEC
T ss_pred EEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceEEEEcCCCCcEEEEEEc
Confidence 999999999999999999999999999999999999999999999 999999999887 6778888999999999999
Q ss_pred CCCCEEEEEEcCCeEEEEECC
Q 003279 775 PTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 775 pdg~~L~sgs~dg~I~Iwdl~ 795 (834)
|++.+|++++.|+.|+||+++
T Consensus 390 ~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 390 KTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp SSSSCEEEEETTSEEEEEC--
T ss_pred CCCCEEEEEeCCCcEEEEeCC
Confidence 999999999999999999863
No 23
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-37 Score=343.19 Aligned_cols=309 Identities=13% Similarity=0.172 Sum_probs=265.7
Q ss_pred eEEeccCCCCeEEeec----CCCCCCCcccccccccCCCeeeeEEEE----------ecCCCCCeEEEEEcCCCCEEEEE
Q 003279 505 FVDDGSLDDNVESFLS----PDDADPRDRVGRSAEVGKGFTFTEFQL----------IPASTSKVESCHFSPDGKLLATG 570 (834)
Q Consensus 505 ~l~~Gs~D~~v~~~~s----~~~~~~~~~~~~~~~~~~g~~~~~~~~----------l~gH~~~V~sl~fSpdg~~Lasg 570 (834)
++++|+.|+.|++|.. ...... ..+..... ..+|.+.|++++|+|++++|++|
T Consensus 60 ~l~~~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 126 (425)
T 1r5m_A 60 ILAYGEKNSVARLARIVETDQEGKKY-------------WKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTG 126 (425)
T ss_dssp EEEEEETBTEEEEEEEEEC------C-------------EEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEE
T ss_pred EEEEecCCceEEEEEEecccCCcccc-------------ccccccccccccccccccccCCCCceEEEEEcCCCCEEEEE
Confidence 8999999999999976 322100 00111111 22378899999999999999999
Q ss_pred eCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCC-----------
Q 003279 571 GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT----------- 639 (834)
Q Consensus 571 s~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~----------- 639 (834)
+.||.|+||| .+++.+..+..|...|.+++|+|++++|++++.|+.|++||+.++.. +..+..+...
T Consensus 127 ~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 204 (425)
T 1r5m_A 127 VENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV-MQHFELKETGGSSINAENHSG 204 (425)
T ss_dssp ETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE-EEEECCC--------------
T ss_pred eCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE-EEEeeccccCccceeeccccC
Confidence 9999999999 77888899999999999999999999999999999999999987653 6666666666
Q ss_pred ----eEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 640 ----VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR 714 (834)
Q Consensus 640 ----V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~ 714 (834)
|.+++|++++ .+++++.|+.|++||+++++.+..+. +...+.+++|+|++.+|++++.|+.|++||+++++.+
T Consensus 205 ~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 282 (425)
T 1r5m_A 205 DGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQ 282 (425)
T ss_dssp -CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCS
T ss_pred CcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccc
Confidence 9999999974 46688899999999999998887775 4677999999999999999999999999999999989
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003279 715 LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 793 (834)
Q Consensus 715 ~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwd 793 (834)
..+..|...|.+++|+|++ +|++++ |+.|++||+.++ ..+..+..+...|.+++|+|++.+|++++.|+.|++||
T Consensus 283 ~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~ 358 (425)
T 1r5m_A 283 NCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN---TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYD 358 (425)
T ss_dssp EEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT---EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC---cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEE
Confidence 9999999999999999999 888877 999999999887 78888888999999999999999999999999999999
Q ss_pred CCCCe--------------------EE-EeccCCC--CeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 794 MTENK--------------------TL-TLSAHDK--LVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 794 l~~~~--------------------~~-~l~~h~~--~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+.+++ .+ .+..|.. .|.+++|+|++++|++++.||.|+|||
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 422 (425)
T 1r5m_A 359 LKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVA 422 (425)
T ss_dssp CHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEE
T ss_pred CCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEe
Confidence 98877 55 6777866 999999999999999999999999996
No 24
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.1e-36 Score=328.34 Aligned_cols=287 Identities=19% Similarity=0.337 Sum_probs=247.1
Q ss_pred eeeEEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCCC-----eEEEEeccCCCCeEEEEECCCCCEEEEEeC
Q 003279 541 TFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESF-----TVKSTLEEHTQWITDVRFSPSLSRLATSSA 614 (834)
Q Consensus 541 ~~~~~~~l~gH~~~V~sl~fSpd-g~~Lasgs~Dg~I~IWd~~t~-----~~~~~l~~h~~~I~~l~fspdg~~Latgs~ 614 (834)
.+....+|+||++.|++|+|+|+ +++||||+.|++|+|||+.+. .+...+.+|...|.+++|+|++++|++++.
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~ 106 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW 106 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence 44556789999999999999997 689999999999999998754 356788999999999999999999999999
Q ss_pred CCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee--cCCCeeEEEEecCC-
Q 003279 615 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRL- 691 (834)
Q Consensus 615 Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~--~~~~i~~l~~sp~g- 691 (834)
|+.|++|+...... ......+...+..+.+++++. +|++++.|+.+++||+.......... +...+.+++|++++
T Consensus 107 d~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 184 (340)
T 4aow_A 107 DGTLRLWDLTTGTT-TRRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS 184 (340)
T ss_dssp TSEEEEEETTTTEE-EEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS
T ss_pred cccceEEeecccce-eeeecCCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC
Confidence 99999999997554 566677888899999999876 56689999999999998765443322 35678899998764
Q ss_pred -CEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003279 692 -GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 769 (834)
Q Consensus 692 -~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 769 (834)
..+++++.|+.|++||+++++.+..+.+|...|++++|+|++++|++++ |+.|++||+++. ..+..+.. ...+.
T Consensus 185 ~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~---~~~~~~~~-~~~v~ 260 (340)
T 4aow_A 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG---KHLYTLDG-GDIIN 260 (340)
T ss_dssp SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-SSCEE
T ss_pred CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC---ceeeeecC-CceEE
Confidence 5678889999999999999999999999999999999999999999999 999999999987 66666654 46799
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeEE----------EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 770 SCVFHPTFPSLLVIGCYETLELWNMTENKTL----------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 770 svafspdg~~L~sgs~dg~I~Iwdl~~~~~~----------~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+++|+|++. +++++.|+.|++||++++..+ ....|...|++++|+|++++||+|+.||.|+|||
T Consensus 261 ~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 261 ALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 999999876 566778999999999987655 2346889999999999999999999999999997
No 25
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-38 Score=353.31 Aligned_cols=311 Identities=16% Similarity=0.225 Sum_probs=267.6
Q ss_pred ceEEec----------cCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 003279 504 RFVDDG----------SLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 573 (834)
Q Consensus 504 ~~l~~G----------s~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~D 573 (834)
.++++| +.|+.|++|........ ..+.. ..|...|++++|+|++++|++|+.|
T Consensus 26 ~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~----------------~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d 88 (416)
T 2pm9_A 26 PLLVSGTVSGTVDANFSTDSSLELWSLLAADSE----------------KPIAS-LQVDSKFNDLDWSHNNKIIAGALDN 88 (416)
T ss_dssp CEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC----------------SCSCC-CCCSSCEEEEEECSSSSCEEEEESS
T ss_pred CEEEEEecCcccccccCCCCeEEEEEccCCCCC----------------cEEEE-EecCCceEEEEECCCCCeEEEEccC
Confidence 377777 88999999966443110 01112 2588899999999999999999999
Q ss_pred CcEEEEeCCC----CeEEEEeccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCCC------ce--eeeeccCCCCe
Q 003279 574 KKAVLWCTES----FTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD------YS--LRTFTGHSTTV 640 (834)
Q Consensus 574 g~I~IWd~~t----~~~~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~s~~------~~--i~~~~~h~~~V 640 (834)
|.|+|||+.+ .+.+..+.+|...|++++|+|+ +.+|++++.|+.|++||+.+.. .. ...+..|...|
T Consensus 89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (416)
T 2pm9_A 89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV 168 (416)
T ss_dssp SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC
T ss_pred CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCe
Confidence 9999999987 4588889999999999999998 8999999999999999999765 22 22346799999
Q ss_pred EEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-------CCCeeEEEEecCC-CEEEEEEcCC---eEEEEECC
Q 003279 641 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRL-GRILAAAIEN---YISILDVE 709 (834)
Q Consensus 641 ~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-------~~~i~~l~~sp~g-~~ll~~s~dg---~I~iwDl~ 709 (834)
.+++|+|++..+|++++.|+.|++||+++++.+..+.. ...+.+++|+|++ ..+++++.++ .|++||++
T Consensus 169 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~ 248 (416)
T 2pm9_A 169 ISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR 248 (416)
T ss_dssp CEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETT
T ss_pred eEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCC
Confidence 99999999777899999999999999999998888876 4679999999997 5888888888 99999999
Q ss_pred CC-eEEEEEe-CCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEE
Q 003279 710 TQ-VCRLKLQ-GHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIG 784 (834)
Q Consensus 710 t~-~~~~~l~-~h~~~I~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg-~~L~sgs 784 (834)
++ .++..+. +|...|.+++|+| ++.+|++++ |+.|++||++++ +.+..+..|...|.+++|+|++ .+|++++
T Consensus 249 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~ 325 (416)
T 2pm9_A 249 NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA---EQLSQFPARGNWCFKTKFAPEAPDLFACAS 325 (416)
T ss_dssp STTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC---CEEEEEECSSSCCCCEEECTTCTTEEEECC
T ss_pred CCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC---ccceeecCCCCceEEEEECCCCCCEEEEEe
Confidence 86 6677777 8999999999999 899999998 999999999987 7788888999999999999999 8999999
Q ss_pred cCCeEEEEECCCCeEEE-e-----------------------------------ccCCCCeEEEEEeCCCCEEEEEecCC
Q 003279 785 CYETLELWNMTENKTLT-L-----------------------------------SAHDKLVSSLAASTVNGMVASASHDK 828 (834)
Q Consensus 785 ~dg~I~Iwdl~~~~~~~-l-----------------------------------~~h~~~V~~lafspdg~~LaSgs~DG 828 (834)
.|+.|++||+.+..... . ..|...+.+++|+|+|++|++++.||
T Consensus 326 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~ 405 (416)
T 2pm9_A 326 FDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGK 405 (416)
T ss_dssp SSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSS
T ss_pred cCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCC
Confidence 99999999998765321 0 01667888999999999999999999
Q ss_pred cEEEeC
Q 003279 829 CVKIWK 834 (834)
Q Consensus 829 ~I~IWd 834 (834)
.|+|||
T Consensus 406 ~v~~w~ 411 (416)
T 2pm9_A 406 GVSITN 411 (416)
T ss_dssp CBCCBC
T ss_pred eEEEEE
Confidence 999997
No 26
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.2e-37 Score=339.85 Aligned_cols=287 Identities=14% Similarity=0.152 Sum_probs=255.6
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe------EEEEeccCCCCeEEEEECCC----C---CE
Q 003279 542 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRFSPS----L---SR 608 (834)
Q Consensus 542 ~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~------~~~~l~~h~~~I~~l~fspd----g---~~ 608 (834)
......+.+|.+.|++|+|+| ++|++|+.||.|+|||+.+++ .+..+.+|...|++++|+|+ + .+
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 345678899999999999998 799999999999999999887 78888899999999999999 9 99
Q ss_pred EEEEeCCCeEEEEecCCCCc----eeeeeccC-----CCCeEEEEEc----cCCCcEEEEEeCCCcEEEEECCC------
Q 003279 609 LATSSADRTVRVWDTENPDY----SLRTFTGH-----STTVMSLDFH----PSKEDLLCSCDNNSEIRYWSINN------ 669 (834)
Q Consensus 609 Latgs~Dg~I~IWDl~s~~~----~i~~~~~h-----~~~V~sl~fs----pdg~~llasgs~Dg~I~lwDl~s------ 669 (834)
|++++.|+.|++||+.+... .+..+..| ...|.+++|+ |++..+|++++.||.|++||+++
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 99999999999999987653 15667778 5899999999 98875377999999999999998
Q ss_pred Cceee-----Eee--------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC---C---CCCEEEEEEc
Q 003279 670 GSCAG-----VFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---H---KNQVHSVCWN 730 (834)
Q Consensus 670 ~~~i~-----~~~--------~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~---h---~~~I~sl~~s 730 (834)
++.+. .+. +...+.+++|+|++ .+++++.|+.|++||+++++.+..+.. | ...|.+++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~ 242 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 242 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence 66655 554 36779999999999 999999999999999999999999998 8 9999999999
Q ss_pred CCCCEEEEEe-C---CeEEEEEcCCCCCceeEEEeec-------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003279 731 TSGEYLASVS-D---ELVRVWSIGSGSKGECIHELSC-------------TGNKFHSCVFHPTFPSLLVIGCYETLELWN 793 (834)
Q Consensus 731 pdg~~Lasgs-D---g~I~IwDl~s~~~~~~i~~~~~-------------~~~~I~svafspdg~~L~sgs~dg~I~Iwd 793 (834)
|++.+|++++ | +.|++||++++ ..+..+.. |...|.+++|+|++.+|++++.|+.|++||
T Consensus 243 ~~~~~l~~~~~d~~~g~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 243 PQGSLLAIAHDSNSFGCITLYETEFG---ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTC---CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEecCCCCceEEEEECCCC---cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 9999999998 8 89999999987 67777877 899999999999999999999999999999
Q ss_pred CCCCeEE-Eec------cC---------------CCCeEEEEEeCCC----------CEEEEEecCCcEEEeC
Q 003279 794 MTENKTL-TLS------AH---------------DKLVSSLAASTVN----------GMVASASHDKCVKIWK 834 (834)
Q Consensus 794 l~~~~~~-~l~------~h---------------~~~V~~lafspdg----------~~LaSgs~DG~I~IWd 834 (834)
+.+++.+ .+. .| ...|.+++|+|++ .+|++++.||.|+|||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred cCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 9999877 555 67 8999999999998 7999999999999996
No 27
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.3e-36 Score=324.07 Aligned_cols=271 Identities=19% Similarity=0.302 Sum_probs=240.8
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
.++++|+.|+.|++|..... ..+..+.+|...|.+++|+|++++|++|+.|++|+|||+.+
T Consensus 26 ~~l~s~~~dg~v~lWd~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~ 86 (304)
T 2ynn_A 26 PWVLTTLYSGRVELWNYETQ-------------------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86 (304)
T ss_dssp SEEEEEETTSEEEEEETTTT-------------------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred CEEEEEcCCCcEEEEECCCC-------------------ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 78999999999999965432 24567789999999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 663 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 663 (834)
++.+..+.+|.+.|++++|+|++.+|++|+.|++|++||+.++......+.+|...|.+++|+|++..+|++|+.|+.|+
T Consensus 87 ~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~ 166 (304)
T 2ynn_A 87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166 (304)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEE
T ss_pred CcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEE
Confidence 99999999999999999999999999999999999999999876667788999999999999997667888999999999
Q ss_pred EEECCCCceeeEeec--CCCeeEEEEec--CCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 003279 664 YWSINNGSCAGVFKC--QSGATQMRFQP--RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 739 (834)
Q Consensus 664 lwDl~s~~~i~~~~~--~~~i~~l~~sp--~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasg 739 (834)
+||++.+.....+.. ...+..+.|+| ++.+|++++.|+.|++||+++++++..+.+|...|.+++|+|++.+|+++
T Consensus 167 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 246 (304)
T 2ynn_A 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISG 246 (304)
T ss_dssp EEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEE
T ss_pred EEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEE
Confidence 999988776665543 45688899987 67899999999999999999999999999999999999999999999999
Q ss_pred e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCC
Q 003279 740 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTE 796 (834)
Q Consensus 740 s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~-L~sgs~dg~I~Iwdl~~ 796 (834)
+ |++|++||+.++ +++..+..+...+.+++|+|++.. +++++.++.+.+|++.+
T Consensus 247 s~Dg~i~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~ 302 (304)
T 2ynn_A 247 SEDGTLKIWNSSTY---KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (304)
T ss_dssp ETTSCEEEEETTTC---CEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred cCCCeEEEEECCCC---ceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence 9 999999999987 788888888999999999998853 34445566688888765
No 28
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=8.3e-37 Score=337.61 Aligned_cols=244 Identities=17% Similarity=0.282 Sum_probs=212.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE----EeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS----TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 625 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~----~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s 625 (834)
.|...|.+++|+|++ .|++|+.||+|+|||+.+++.+. .+.+|.+.|++|+|+|++++|++|+.|++|+|||+.+
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 466789999999986 78899999999999999886543 3458999999999999999999999999999999998
Q ss_pred CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec---CCCeeEEEEecC-CCEEEEEEcCC
Q 003279 626 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPR-LGRILAAAIEN 701 (834)
Q Consensus 626 ~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~---~~~i~~l~~sp~-g~~ll~~s~dg 701 (834)
+. .+..+.+|...|.+++|++++..+|++|+.|+.|++||++++++...+.. ...+.+++|+|+ +.+|++++.|+
T Consensus 159 ~~-~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg 237 (344)
T 4gqb_B 159 QV-VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG 237 (344)
T ss_dssp TE-EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred Cc-EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence 65 58889999999999999999988999999999999999999998877653 345889999995 45778889999
Q ss_pred eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003279 702 YISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 779 (834)
Q Consensus 702 ~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~ 779 (834)
.|++||+++++++..+.+|...|++++|+|++ .+|++++ |++|+|||+.++ + +..+.+|...|.+++|+|++..
T Consensus 238 ~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~---~-~~~~~~H~~~V~~v~~sp~~~~ 313 (344)
T 4gqb_B 238 TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS---E-LFRSQAHRDFVRDATWSPLNHS 313 (344)
T ss_dssp EEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC---E-EEEECCCSSCEEEEEECSSSTT
T ss_pred cEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC---c-EEEEcCCCCCEEEEEEeCCCCe
Confidence 99999999999999999999999999999998 5788888 999999999886 3 3456789999999999999875
Q ss_pred -EEEEEcCCeEEEEECCCCeE
Q 003279 780 -LLVIGCYETLELWNMTENKT 799 (834)
Q Consensus 780 -L~sgs~dg~I~Iwdl~~~~~ 799 (834)
|++++.|++|++|++.+...
T Consensus 314 llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 314 LLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEEEEETTSCEEEEECCC---
T ss_pred EEEEEcCCCeEEEEECCCCCC
Confidence 56889999999999987543
No 29
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.4e-36 Score=332.18 Aligned_cols=282 Identities=15% Similarity=0.191 Sum_probs=248.0
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--EEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC
Q 003279 548 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 625 (834)
Q Consensus 548 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s 625 (834)
+..|.++|++++|+|++++||+|+.|+.|+|||+.+++ .+..+.+|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 45699999999999999999999999999999999987 8888999999999999999999999999999999999987
Q ss_pred CCce-eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce---eeEee--cCCCeeEEEEecCCCEEEEEEc
Q 003279 626 PDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFK--CQSGATQMRFQPRLGRILAAAI 699 (834)
Q Consensus 626 ~~~~-i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~---i~~~~--~~~~i~~l~~sp~g~~ll~~s~ 699 (834)
+... ...+..|...|.+++|+|++. +|++++.|+.|++||++.+.. ...+. +...+.+++|+|++.+|++++.
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence 6532 334467899999999999976 677889999999999998763 22322 3567999999999999999999
Q ss_pred CCeEEEEEC------------------CCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEE
Q 003279 700 ENYISILDV------------------ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 760 (834)
Q Consensus 700 dg~I~iwDl------------------~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~ 760 (834)
|+.|++||+ ..+..+..+..|...|.+++|+|++.+|++++ |+.|++||++++ .++..
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~ 239 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK---MAVAT 239 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT---TEEEE
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC---ceeEE
Confidence 999999995 46788889989999999999999999999999 999999999987 67888
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC--CeE---------------------------------------
Q 003279 761 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE--NKT--------------------------------------- 799 (834)
Q Consensus 761 ~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~--~~~--------------------------------------- 799 (834)
+..+...|.+++|+|++.+|+++ .|+.|++|++.+ ++.
T Consensus 240 ~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (372)
T 1k8k_C 240 LASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG 318 (372)
T ss_dssp EECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------
T ss_pred EccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccc
Confidence 88899999999999999877766 999999999987 431
Q ss_pred EEe-ccCCCCeEEEEEe-CCC---CEEEEEecCCcEEEeC
Q 003279 800 LTL-SAHDKLVSSLAAS-TVN---GMVASASHDKCVKIWK 834 (834)
Q Consensus 800 ~~l-~~h~~~V~~lafs-pdg---~~LaSgs~DG~I~IWd 834 (834)
..+ .+|...|++++|+ ++| .+|++|+.||.|+|||
T Consensus 319 ~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 319 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred ccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 222 3899999999966 666 8999999999999996
No 30
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1e-35 Score=358.63 Aligned_cols=285 Identities=21% Similarity=0.356 Sum_probs=244.8
Q ss_pred eEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCC-----CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 003279 543 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 616 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~IWd~~t-----~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg 616 (834)
.....+.+|++.|++|+|++++ ++|++|+.|++|+|||+.+ +.....+.+|...|.+++|+|++++|++|+.|+
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 4456789999999999999864 7999999999999999875 345678899999999999999999999999999
Q ss_pred eEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee----cCCCeeEEEEecCC-
Q 003279 617 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQMRFQPRL- 691 (834)
Q Consensus 617 ~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~----~~~~i~~l~~sp~g- 691 (834)
+|+|||+.++. .+..+.+|...|.+++|+|++. +|++|+.|++|++||+.......... +...|.+++|+|++
T Consensus 453 ~v~vwd~~~~~-~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 530 (694)
T 3dm0_A 453 ELRLWDLAAGV-STRRFVGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL 530 (694)
T ss_dssp EEEEEETTTTE-EEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred cEEEEECCCCc-ceeEEeCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence 99999999765 4778889999999999999977 56699999999999987554433322 34569999999986
Q ss_pred -CEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003279 692 -GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 769 (834)
Q Consensus 692 -~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 769 (834)
..+++++.|+.|++||++++++...+.+|...|++++|+|++.+|++++ |+.|+|||+.++ .++..+.. ...|.
T Consensus 531 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~---~~~~~~~~-~~~v~ 606 (694)
T 3dm0_A 531 QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG---KKLYSLEA-NSVIH 606 (694)
T ss_dssp SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT---EEEECCBC-SSCEE
T ss_pred cceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---ceEEEecC-CCcEE
Confidence 5799999999999999999999999999999999999999999999999 999999999987 56655543 56799
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE-eccC-------------------CCCeEEEEEeCCCCEEEEEecCCc
Q 003279 770 SCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LSAH-------------------DKLVSSLAASTVNGMVASASHDKC 829 (834)
Q Consensus 770 svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~-l~~h-------------------~~~V~~lafspdg~~LaSgs~DG~ 829 (834)
+++|+|++.+|+++ .++.|+|||+.+++.+. +..+ ...+++++|+|+|++|++|+.||.
T Consensus 607 ~~~~sp~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~ 685 (694)
T 3dm0_A 607 ALCFSPNRYWLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV 685 (694)
T ss_dssp EEEECSSSSEEEEE-ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEcCCCcEEEEE-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence 99999999866655 56679999999988762 2211 123789999999999999999999
Q ss_pred EEEeC
Q 003279 830 VKIWK 834 (834)
Q Consensus 830 I~IWd 834 (834)
|+|||
T Consensus 686 i~iW~ 690 (694)
T 3dm0_A 686 IRVWG 690 (694)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
No 31
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.1e-36 Score=336.41 Aligned_cols=310 Identities=15% Similarity=0.226 Sum_probs=258.4
Q ss_pred cCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003279 500 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 579 (834)
Q Consensus 500 ~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IW 579 (834)
.....++++|+.|+.+++|....... ...+..| ..+....|++++++||+|+.||.|+||
T Consensus 65 s~~g~~l~~~~~d~~v~i~d~~~~~~-------------------~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iw 124 (420)
T 3vl1_A 65 EKVGSHLYKARLDGHDFLFNTIIRDG-------------------SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVL 124 (420)
T ss_dssp EEEETTEEEEEETTEEEEEECCSEET-------------------TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEE
T ss_pred eecCCeEEEEEcCCcEEEEEecccce-------------------eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEE
Confidence 33447789999999999996543311 1122344 335556789999999999999999999
Q ss_pred eCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC
Q 003279 580 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 659 (834)
Q Consensus 580 d~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D 659 (834)
|+.+++....+.+|...|++++|+|++++|++++.|+.|++||+.++.. +..+.+|...|.+++|+|++. +|++++.|
T Consensus 125 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d 202 (420)
T 3vl1_A 125 DSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN-PRTLIGHRATVTDIAIIDRGR-NVLSASLD 202 (420)
T ss_dssp CTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC-CEEEECCSSCEEEEEEETTTT-EEEEEETT
T ss_pred eCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC-ceEEcCCCCcEEEEEEcCCCC-EEEEEcCC
Confidence 9999999998899999999999999999999999999999999998664 677889999999999999976 66699999
Q ss_pred CcEEEEECCCCceeeEeec----CCCee---------------------EEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 660 SEIRYWSINNGSCAGVFKC----QSGAT---------------------QMRFQPRLGRILAAAIENYISILDVETQVCR 714 (834)
Q Consensus 660 g~I~lwDl~s~~~i~~~~~----~~~i~---------------------~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~ 714 (834)
+.|++||+++++.+..+.. ...+. +++|+|++.+|++++.||.|++||+++++.+
T Consensus 203 ~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~ 282 (420)
T 3vl1_A 203 GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT 282 (420)
T ss_dssp SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEE
T ss_pred CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCcee
Confidence 9999999999998888763 23344 4455788899999999999999999999877
Q ss_pred EEEe-CCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003279 715 LKLQ-GHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLE 790 (834)
Q Consensus 715 ~~l~-~h~~~I~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-~~~~I~svafspdg~~L~sgs~dg~I~ 790 (834)
..+. .|...|.+++|+|++. +|++++ |+.|++||++++. ..+..+.. +...+.++.+ +++.+|++++.|+.|+
T Consensus 283 ~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~ 359 (420)
T 3vl1_A 283 IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE--CPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIK 359 (420)
T ss_dssp EEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEE
T ss_pred EEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc--CchhhhhccCCCCceEEEe-CCCCEEEEecCCccEE
Confidence 7765 4888999999999998 999988 9999999999874 23555555 5667777755 5778999999999999
Q ss_pred EEECCCC----------eEEEeccCCCCeEEEEEeCCCC---EEEEEecCCcEEEeC
Q 003279 791 LWNMTEN----------KTLTLSAHDKLVSSLAASTVNG---MVASASHDKCVKIWK 834 (834)
Q Consensus 791 Iwdl~~~----------~~~~l~~h~~~V~~lafspdg~---~LaSgs~DG~I~IWd 834 (834)
+||+... ....+..|...|.+++|+|++. .|++++.+|.+.+|+
T Consensus 360 iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 360 LDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp EEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred EEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence 9998762 2335668899999999999999 788888999999995
No 32
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.2e-35 Score=322.12 Aligned_cols=277 Identities=23% Similarity=0.371 Sum_probs=244.4
Q ss_pred CCceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeE
Q 003279 477 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 556 (834)
Q Consensus 477 ~~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~ 556 (834)
.....+.|++++ .++++|+.|+.|++|..... ..+..+..|...|.
T Consensus 56 ~~v~~~~~s~d~---------------~~l~s~s~Dg~v~iWd~~~~-------------------~~~~~~~~~~~~v~ 101 (340)
T 1got_B 56 AKIYAMHWGTDS---------------RLLLSASQDGKLIIWDSYTT-------------------NKVHAIPLRSSWVM 101 (340)
T ss_dssp SCEEEEEECTTS---------------SEEEEEETTTEEEEEETTTC-------------------CEEEEEECSSSCEE
T ss_pred CceEEEEECCCC---------------CEEEEEeCCCcEEEEECCCC-------------------CcceEeecCCccEE
Confidence 355666776654 68999999999999965332 23456778999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCC----eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeee
Q 003279 557 SCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 557 sl~fSpdg~~Lasgs~Dg~I~IWd~~t~----~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~ 632 (834)
+++|+|++++|++|+.|+.|++||+.+. +....+.+|.+.|.++.|++++ .|++++.|++|++||+.++. .+..
T Consensus 102 ~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~-~~~~ 179 (340)
T 1got_B 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQ-QTTT 179 (340)
T ss_dssp EEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTE-EEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCc-EEEE
Confidence 9999999999999999999999999865 4567788999999999999876 48999999999999999865 4778
Q ss_pred eccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003279 633 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ 711 (834)
Q Consensus 633 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~ 711 (834)
+.+|...|.+++|+|++. ++++|+.|+.|++||++++.++..+.. ...|.+++|+|++.+|++++.|+.|++||++++
T Consensus 180 ~~~h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~ 258 (340)
T 1got_B 180 FTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258 (340)
T ss_dssp ECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred EcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence 889999999999999976 777999999999999999998888874 567999999999999999999999999999999
Q ss_pred eEEEEEeC--CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 003279 712 VCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET 788 (834)
Q Consensus 712 ~~~~~l~~--h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~ 788 (834)
..+..+.. +...|.+++|+|++.+|++++ |+.|++||+.++ ..+..+.+|...|.+++|+|++.+|++++.|+.
T Consensus 259 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~ 335 (340)
T 1got_B 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335 (340)
T ss_dssp EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred cEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC---cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCcc
Confidence 88777753 334799999999999999999 999999999887 677888999999999999999999999999999
Q ss_pred EEEEE
Q 003279 789 LELWN 793 (834)
Q Consensus 789 I~Iwd 793 (834)
|+|||
T Consensus 336 i~iWd 340 (340)
T 1got_B 336 LKIWN 340 (340)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99997
No 33
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5e-35 Score=318.82 Aligned_cols=275 Identities=17% Similarity=0.270 Sum_probs=240.7
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
..++++|+.|+.|++|...... ......+..+.+|...|.+++|+|++++|++|+.|++|+|||+.
T Consensus 30 ~~~l~s~s~D~~v~~W~~~~~~--------------~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~ 95 (319)
T 3frx_A 30 PNLLLSASRDKTLISWKLTGDD--------------QKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVA 95 (319)
T ss_dssp TTEEEEEETTSEEEEEEEEEET--------------TEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ccEEEEecCCccEEEecCCCCC--------------ccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 3789999999999999653221 11224567889999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCC-----CcEEEEEe
Q 003279 583 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-----EDLLCSCD 657 (834)
Q Consensus 583 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg-----~~llasgs 657 (834)
+++.+..+.+|...|.+++|+|++.+|++|+.|++|++||+.. ..+..+.+|...|.+++|.|.. ..++++++
T Consensus 96 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~ 173 (319)
T 3frx_A 96 TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173 (319)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECCC------CCEEEEEE
T ss_pred CCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEe
Confidence 9999999999999999999999999999999999999999974 3477888999999999999863 33788999
Q ss_pred CCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEE
Q 003279 658 NNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL 736 (834)
Q Consensus 658 ~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~L 736 (834)
.|+.|++||+++.+....+. +...|.+++|+|++.+|++++.|+.|++||+++++++..+.. ...|.+++|+|++.+|
T Consensus 174 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l 252 (319)
T 3frx_A 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWL 252 (319)
T ss_dssp TTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEE
T ss_pred CCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEE
Confidence 99999999999988877765 467799999999999999999999999999999999998885 4689999999999999
Q ss_pred EEEeCCeEEEEEcCCCCCceeEEEee--------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003279 737 ASVSDELVRVWSIGSGSKGECIHELS--------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 797 (834)
Q Consensus 737 asgsDg~I~IwDl~s~~~~~~i~~~~--------~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~ 797 (834)
+++.++.+++|++... ..+..+. .+...+.+++|+|+|++|++++.|+.|+|||+.++
T Consensus 253 a~~~~~~i~v~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 253 AAATATGIKVFSLDPQ---YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEETTEEEEEEETTE---EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEEcCCCcEEEEeCcC---eeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 9999888999999875 4444433 24567899999999999999999999999998654
No 34
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-35 Score=312.74 Aligned_cols=280 Identities=15% Similarity=0.235 Sum_probs=249.0
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 003279 541 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 620 (834)
Q Consensus 541 ~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~I 620 (834)
.+.....+.+|.+.|++++| +++++|++|+.||.|+|||+.+++....+..|...|.+++|+|++.+|++++.|+.|++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 34567889999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCC--ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEec-CCCEEEE
Q 003279 621 WDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQP-RLGRILA 696 (834)
Q Consensus 621 WDl~s~~--~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp-~g~~ll~ 696 (834)
|++.... ..+..+.+|...|.+++|. ..++++++.|+.|++|| .++.+..+. +...+.++.|.+ ++..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EEeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 9997643 3467788899999999994 33788999999999999 556666555 467799999998 8999999
Q ss_pred EEcCCeEEEEECCCCeEEEEEeC-CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEe
Q 003279 697 AAIENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 774 (834)
Q Consensus 697 ~s~dg~I~iwDl~t~~~~~~l~~-h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafs 774 (834)
++.|+.|++|| .......+.. |...|.+++|+|++. +++++ |+.|++||++++ +.+..+..|...|.+++|+
T Consensus 161 ~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~ 234 (313)
T 3odt_A 161 ASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG---DVLRTYEGHESFVYCIKLL 234 (313)
T ss_dssp EETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEEC
T ss_pred EECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch---hhhhhhhcCCceEEEEEEe
Confidence 99999999999 5566777777 899999999999999 66666 999999999987 6788888999999999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 775 PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 775 pdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
|++ .|++++.|+.|++||+.+++.+ .+..|...|.+++|+|+++ +++++.||.|+|||
T Consensus 235 ~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 235 PNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS 293 (313)
T ss_dssp TTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred cCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence 999 5999999999999999999877 6778999999999999998 56789999999996
No 35
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.9e-35 Score=328.48 Aligned_cols=285 Identities=16% Similarity=0.226 Sum_probs=237.3
Q ss_pred eeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeEEEEec--cCCCCeEEEEECC-CCCEEEEEeCCCe
Q 003279 542 FTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSP-SLSRLATSSADRT 617 (834)
Q Consensus 542 ~~~~~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~IWd~~t~~~~~~l~--~h~~~I~~l~fsp-dg~~Latgs~Dg~ 617 (834)
+..+..+.+|.+.|++++|+|++ ++||+|+.||.|+|||+.+++....+. +|...|.+++|+| ++.+|++++.|+.
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 45567889999999999999999 999999999999999999888777765 6999999999999 7899999999999
Q ss_pred EEEEecCCCCceeeeecc---CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCC-
Q 003279 618 VRVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG- 692 (834)
Q Consensus 618 I~IWDl~s~~~~i~~~~~---h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~- 692 (834)
|++||+.+. .+..+.. |...|.+++|+|++. +|++++.|+.|++||++ ++.+..+. +...|.+++|+|++.
T Consensus 143 i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 143 TTLRDFSGS--VIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDW 218 (383)
T ss_dssp EEEEETTSC--EEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTT
T ss_pred EEEEECCCC--ceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCC
Confidence 999999863 3444443 448899999999976 67799999999999995 56666665 567899999999998
Q ss_pred EEEEEEcCCeEEEEECCC----CeEEEEEeCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCCCceeEEEee----
Q 003279 693 RILAAAIENYISILDVET----QVCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELS---- 762 (834)
Q Consensus 693 ~ll~~s~dg~I~iwDl~t----~~~~~~l~~h~~~I~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~---- 762 (834)
.+++++.|+.|++||+++ +.++..+ +|...|.+++|+| ++.+|++++ |+.|++||++++.....+....
T Consensus 219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 297 (383)
T 3ei3_B 219 LMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF 297 (383)
T ss_dssp EEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred EEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence 899999999999999998 6677666 5999999999999 999999999 9999999999875433222111
Q ss_pred cCC----------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-Eecc--CCCCeEEEEEeCCCCEEEEEecCCc
Q 003279 763 CTG----------NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA--HDKLVSSLAASTVNGMVASASHDKC 829 (834)
Q Consensus 763 ~~~----------~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~--h~~~V~~lafspdg~~LaSgs~DG~ 829 (834)
.+. ..+..++|+|++.+ +++.|+.|++||+.+++.+ .+.. |...+.+++|+|++++|++|+ ||.
T Consensus 298 ~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~ 374 (383)
T 3ei3_B 298 QHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFN 374 (383)
T ss_dssp TTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTE
T ss_pred ccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCc
Confidence 111 33444666666665 6678999999999998887 4544 567888889999999999997 999
Q ss_pred EEEeC
Q 003279 830 VKIWK 834 (834)
Q Consensus 830 I~IWd 834 (834)
|+|||
T Consensus 375 i~iw~ 379 (383)
T 3ei3_B 375 ILIWN 379 (383)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
No 36
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1e-35 Score=324.76 Aligned_cols=287 Identities=15% Similarity=0.200 Sum_probs=242.0
Q ss_pred EEecCCCCCeEEEEEcCCCCEE-EEEeC---CCcEEEEeCCCCeEEEEe-ccCCCCeEEEEECCC---CCEEEEEeCCCe
Q 003279 546 QLIPASTSKVESCHFSPDGKLL-ATGGH---DKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPS---LSRLATSSADRT 617 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~L-asgs~---Dg~I~IWd~~t~~~~~~l-~~h~~~I~~l~fspd---g~~Latgs~Dg~ 617 (834)
..+.+|.+.|.+++|+|++..| ++|+. |+.|+|||+.+++..... .+|...|.+++|+|+ +.+|++++.||.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 4557899999999999999655 55655 899999999998776443 379999999999998 699999999999
Q ss_pred EEEEecCCCCceeeeeccCCCCeEEEEE------ccCCCcEEEEEeCCCcEEEEECCCCc-eeeEeec-----CCCeeEE
Q 003279 618 VRVWDTENPDYSLRTFTGHSTTVMSLDF------HPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKC-----QSGATQM 685 (834)
Q Consensus 618 I~IWDl~s~~~~i~~~~~h~~~V~sl~f------spdg~~llasgs~Dg~I~lwDl~s~~-~i~~~~~-----~~~i~~l 685 (834)
|++||+.++...+..+.+|...|.+++| +|++. +|++++.||.|++||++++. .+..+.. ...+.++
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV 170 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence 9999999877567888999999999965 56665 67799999999999999886 5666653 2268888
Q ss_pred E----EecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcC---CCCEEEEEe-CCeEEEEEcCCCCCcee
Q 003279 686 R----FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT---SGEYLASVS-DELVRVWSIGSGSKGEC 757 (834)
Q Consensus 686 ~----~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~sp---dg~~Lasgs-Dg~I~IwDl~s~~~~~~ 757 (834)
. |++++.++++++.|+.|++||+++++.... ..|...|.+++|+| ++.+|++++ |+.|++||++++.....
T Consensus 171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 249 (357)
T 3i2n_A 171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG 249 (357)
T ss_dssp EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE
T ss_pred EEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc
Confidence 8 678999999999999999999999987555 45889999999999 899999998 99999999987643222
Q ss_pred EE--EeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCe--------------------EEEeccCCCCeEEEEE
Q 003279 758 IH--ELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTENK--------------------TLTLSAHDKLVSSLAA 814 (834)
Q Consensus 758 i~--~~~~~~~~I~svafspdg~-~L~sgs~dg~I~Iwdl~~~~--------------------~~~l~~h~~~V~~laf 814 (834)
+. .+..|...|.+++|+|++. +|++++.|+.|++||+..+. ...+..|...|++++|
T Consensus 250 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~ 329 (357)
T 3i2n_A 250 FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDW 329 (357)
T ss_dssp EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEE
T ss_pred eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEE
Confidence 22 3448899999999999998 89999999999999997532 2367789999999999
Q ss_pred eCCCCEEE-EEecCCcEEEeC
Q 003279 815 STVNGMVA-SASHDKCVKIWK 834 (834)
Q Consensus 815 spdg~~La-Sgs~DG~I~IWd 834 (834)
+|++++|+ +++.||.|+|||
T Consensus 330 s~~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 330 SPDKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp CSSSTTEEEEEETTSEEEEEE
T ss_pred cCCCCeEEEEecCCCcEEEEE
Confidence 99999888 899999999996
No 37
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.4e-36 Score=328.47 Aligned_cols=286 Identities=15% Similarity=0.274 Sum_probs=246.2
Q ss_pred EEecCCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEeCCCCeEEEEecc-----CCCCeEEEEECCC----CCEEEEE
Q 003279 546 QLIPASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPS----LSRLATS 612 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpd----g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~-----h~~~I~~l~fspd----g~~Latg 612 (834)
....+|.+.|++++|+|+ ...+++++.++.|+|||+.+++.+..+.. |...|++++|+|+ +.+|++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 345599999999999984 45666677778999999998877766643 6678999999998 6799999
Q ss_pred eCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEe----ecCCCeeEEEEe
Q 003279 613 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KCQSGATQMRFQ 688 (834)
Q Consensus 613 s~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~----~~~~~i~~l~~s 688 (834)
+.||.|++||+.+++. +..+.+|...|.+++|+|++..+|++++.||.|++||+++++.+..+ .+...|.+++|+
T Consensus 92 ~~dg~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 92 GSRGIIRIINPITMQC-IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp ETTCEEEEECTTTCCE-EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred cCCCEEEEEEchhceE-eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence 9999999999998654 77788999999999999944558889999999999999999988887 357789999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEE----------------------------EeCCCCCEEEEEEcCCCCEEEEEe
Q 003279 689 PRLGRILAAAIENYISILDVETQVCRLK----------------------------LQGHKNQVHSVCWNTSGEYLASVS 740 (834)
Q Consensus 689 p~g~~ll~~s~dg~I~iwDl~t~~~~~~----------------------------l~~h~~~I~sl~~spdg~~Lasgs 740 (834)
|++.+|++++.|+.|++||+++++.... ...|...|.+++|+ +.+|++++
T Consensus 171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 248 (366)
T 3k26_A 171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS 248 (366)
T ss_dssp TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC
T ss_pred CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe
Confidence 9999999999999999999997654332 23489999999998 77898888
Q ss_pred -CCeEEEEEcCCCCC-----------ceeEEEeecCCCceEEEEEeCC--CCEEEEEEcCCeEEEEECCCCeE-----EE
Q 003279 741 -DELVRVWSIGSGSK-----------GECIHELSCTGNKFHSCVFHPT--FPSLLVIGCYETLELWNMTENKT-----LT 801 (834)
Q Consensus 741 -Dg~I~IwDl~s~~~-----------~~~i~~~~~~~~~I~svafspd--g~~L~sgs~dg~I~Iwdl~~~~~-----~~ 801 (834)
|+.|++||+.+... ...+..+..|...|.+++|+|+ +.+|++++.|+.|++||+.+++. ..
T Consensus 249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 328 (366)
T 3k26_A 249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT 328 (366)
T ss_dssp SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEE
T ss_pred cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceE
Confidence 99999999987632 1347778888999999999999 99999999999999999998753 25
Q ss_pred eccC--CCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 802 LSAH--DKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 802 l~~h--~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+..| ...|++++|+|++++|++++.||.|+|||
T Consensus 329 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 329 LTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD 363 (366)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence 6666 79999999999999999999999999997
No 38
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-35 Score=326.99 Aligned_cols=278 Identities=17% Similarity=0.253 Sum_probs=245.9
Q ss_pred cCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeC----CCCe------EEEEecc----------CCCCeEEEEECCCCC
Q 003279 549 PASTSKVESCHFSPDGK-LLATGGHDKKAVLWCT----ESFT------VKSTLEE----------HTQWITDVRFSPSLS 607 (834)
Q Consensus 549 ~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~IWd~----~t~~------~~~~l~~----------h~~~I~~l~fspdg~ 607 (834)
..|.+.|++++|+|+++ +||+|+.|+.|+|||+ .+++ ....+.. |.+.|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 45678999999999999 9999999999999999 8887 4555544 688999999999999
Q ss_pred EEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCC------
Q 003279 608 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG------ 681 (834)
Q Consensus 608 ~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~------ 681 (834)
+|++++.||.|++||.. ...+..+..|...|.+++|+|++. +|++++.|+.|++||+.+++.+..+.....
T Consensus 122 ~l~~~~~dg~i~i~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 198 (425)
T 1r5m_A 122 SIVTGVENGELRLWNKT--GALLNVLNFHRAPIVSVKWNKDGT-HIISMDVENVTILWNVISGTVMQHFELKETGGSSIN 198 (425)
T ss_dssp EEEEEETTSCEEEEETT--SCEEEEECCCCSCEEEEEECTTSS-EEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred EEEEEeCCCeEEEEeCC--CCeeeeccCCCccEEEEEECCCCC-EEEEEecCCeEEEEECCCCcEEEEeeccccCcccee
Confidence 99999999999999943 335778889999999999999977 566888999999999999998887775433
Q ss_pred ----------eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcC
Q 003279 682 ----------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG 750 (834)
Q Consensus 682 ----------i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~ 750 (834)
+.+++|+++ ..+++++.++.|++||+++++.+..+..|...|.+++|+|++.+|++++ |+.|++||++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 277 (425)
T 1r5m_A 199 AENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG 277 (425)
T ss_dssp -------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS
T ss_pred eccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 889999997 6689999999999999999998889999999999999999999999999 9999999999
Q ss_pred CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCc
Q 003279 751 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKC 829 (834)
Q Consensus 751 s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~ 829 (834)
++ ..+..+..|...|.+++|+|++ .|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++++|++++.||.
T Consensus 278 ~~---~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 353 (425)
T 1r5m_A 278 NG---NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ 353 (425)
T ss_dssp SB---SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred CC---ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCe
Confidence 87 5667777889999999999999 9999999999999999999877 66688999999999999999999999999
Q ss_pred EEEeC
Q 003279 830 VKIWK 834 (834)
Q Consensus 830 I~IWd 834 (834)
|+|||
T Consensus 354 i~i~~ 358 (425)
T 1r5m_A 354 VNVYD 358 (425)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 39
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.1e-35 Score=327.57 Aligned_cols=284 Identities=14% Similarity=0.252 Sum_probs=229.0
Q ss_pred CceEEEEecCCCCCcccCCCcccCCCceEEeccC------CCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCC
Q 003279 478 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSL------DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 551 (834)
Q Consensus 478 ~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~------D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH 551 (834)
...++.|++++ .+|++|+. |+.+++|......... .......+|
T Consensus 44 ~V~~v~fSpDG---------------~~las~s~d~~~~wd~~v~~~~~~~~~~~~---------------~~~~~~~~~ 93 (357)
T 4g56_B 44 QIGAVRYRRDG---------------ALLLAASSLSSRTWGGSIWVFKDPEGAPNE---------------SLCTAGVQT 93 (357)
T ss_dssp EEEEEEECSSS---------------CEEEEEECSSSSSCCEEEEEESSCC---CG---------------GGCSEEEEC
T ss_pred CEEEEEECCCC---------------CEEEEEcCCCCccccCeEEEEECCCCCcce---------------eEecccCCC
Confidence 56778888877 67888876 4456666443321110 112234578
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE----EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 627 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~----~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~ 627 (834)
...|++++|+|+++ +++++.||+|+|||+.+++.. ....+|...|++++|+|++++|++|+.|++|++||+.++.
T Consensus 94 ~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~ 172 (357)
T 4g56_B 94 EAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA 172 (357)
T ss_dssp SSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE
T ss_pred CCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Confidence 89999999999985 556788999999999887654 3345899999999999999999999999999999999865
Q ss_pred ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec---CCCeeEEEEecCC-CEEEEEEcCCeE
Q 003279 628 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRL-GRILAAAIENYI 703 (834)
Q Consensus 628 ~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~---~~~i~~l~~sp~g-~~ll~~s~dg~I 703 (834)
.+..+.+|...|.+++|++++..++++++.|+.|++||++++++...+.. ...+.+++|+|++ .+|++++.|+.|
T Consensus 173 -~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i 251 (357)
T 4g56_B 173 -VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNV 251 (357)
T ss_dssp -EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCE
T ss_pred -EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccce
Confidence 47888999999999999999888888999999999999999887766543 4568999999975 577788999999
Q ss_pred EEEECCCCeEEEEEeCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC-CCCEE
Q 003279 704 SILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TFPSL 780 (834)
Q Consensus 704 ~iwDl~t~~~~~~l~~h~~~I~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafsp-dg~~L 780 (834)
++||+++++++..+.+|...|++++|+|++ .+|++++ |++|+|||++++ +++.. ..|...|++++|+| ++.+|
T Consensus 252 ~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~---~~~~~-~~H~~~V~~vafsP~d~~~l 327 (357)
T 4g56_B 252 SLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS---EVFRD-LSHRDFVTGVAWSPLDHSKF 327 (357)
T ss_dssp EEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC---EEEEE-CCCSSCEEEEEECSSSTTEE
T ss_pred eEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---cEeEE-CCCCCCEEEEEEeCCCCCEE
Confidence 999999999999999999999999999987 5788888 999999999887 55544 47899999999998 78999
Q ss_pred EEEEcCCeEEEEECCCC
Q 003279 781 LVIGCYETLELWNMTEN 797 (834)
Q Consensus 781 ~sgs~dg~I~Iwdl~~~ 797 (834)
++++.|+.|++|++.+.
T Consensus 328 ~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 328 TTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEETTSCEEEEECC--
T ss_pred EEEcCCCeEEEEECCCC
Confidence 99999999999999654
No 40
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4e-34 Score=316.67 Aligned_cols=279 Identities=22% Similarity=0.339 Sum_probs=244.1
Q ss_pred CCceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeE
Q 003279 477 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 556 (834)
Q Consensus 477 ~~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~ 556 (834)
....++.|++++ .++++|+.|+.|++|..... .....+..|...|.
T Consensus 65 ~~V~~~~~s~d~---------------~~l~s~s~Dg~v~vWd~~~~-------------------~~~~~~~~~~~~v~ 110 (354)
T 2pbi_B 65 NKVLCMDWCKDK---------------RRIVSSSQDGKVIVWDSFTT-------------------NKEHAVTMPCTWVM 110 (354)
T ss_dssp SCEEEEEECTTS---------------SEEEEEETTSEEEEEETTTC-------------------CEEEEEECSSSCCC
T ss_pred CeEEEEEECCCC---------------CEEEEEeCCCeEEEEECCCC-------------------CcceEEecCCCCEE
Confidence 355667776655 68999999999999965322 12445667889999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCC------eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCcee
Q 003279 557 SCHFSPDGKLLATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 630 (834)
Q Consensus 557 sl~fSpdg~~Lasgs~Dg~I~IWd~~t~------~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i 630 (834)
+++|+|+|.+||+|+.|+.|++|++... .....+..|...|.+++|+|++..|++++.|++|++||+.++. .+
T Consensus 111 ~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~-~~ 189 (354)
T 2pbi_B 111 ACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ-LL 189 (354)
T ss_dssp EEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EE
T ss_pred EEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe-EE
Confidence 9999999999999999999999998643 3446677899999999999999999999999999999999866 47
Q ss_pred eeeccCCCCeEEEEEccCC-CcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 003279 631 RTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDV 708 (834)
Q Consensus 631 ~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl 708 (834)
..+.+|...|.+++|+|+. ..+|++|+.||.|++||+++++++..+.. ...|.+++|+|++..|++++.|+.|++||+
T Consensus 190 ~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~ 269 (354)
T 2pbi_B 190 QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL 269 (354)
T ss_dssp EEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 8889999999999999853 35888999999999999999999888864 567999999999999999999999999999
Q ss_pred CCCeEEEEEeCC--CCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003279 709 ETQVCRLKLQGH--KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 785 (834)
Q Consensus 709 ~t~~~~~~l~~h--~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~ 785 (834)
+.+..+..+..+ ...+.+++|+|++.+|++++ |+.|++||+.++ ..+..+..|...|.+++|+|++.+|++++.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---~~~~~l~~h~~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 270 RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG---SRVSILFGHENRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---SEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred CCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC---ceEEEEECCCCcEEEEEECCCCCEEEEEcC
Confidence 999887776643 34789999999999999999 999999999887 677788899999999999999999999999
Q ss_pred CCeEEEEE
Q 003279 786 YETLELWN 793 (834)
Q Consensus 786 dg~I~Iwd 793 (834)
|+.|+||+
T Consensus 347 D~~v~vW~ 354 (354)
T 2pbi_B 347 DHTLRVWA 354 (354)
T ss_dssp TSEEEEEC
T ss_pred CCCEEecC
Confidence 99999996
No 41
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.4e-34 Score=316.28 Aligned_cols=279 Identities=15% Similarity=0.231 Sum_probs=231.5
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 581 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~ 581 (834)
...++++|+.|++|++|........ +........+.+|...|.+++|+|++.+|++|+.|++|+|||+
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~------------~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~ 105 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQN------------GYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDL 105 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCS------------SBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEET
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcc------------cccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 4578999999999999976543211 1122346778999999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeee---ccCCCCeEEEEEccCCC--------
Q 003279 582 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPSKE-------- 650 (834)
Q Consensus 582 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~---~~h~~~V~sl~fspdg~-------- 650 (834)
.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+... . .... ..|...|.+++|+|++.
T Consensus 106 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 183 (343)
T 2xzm_R 106 RTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-C-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPF 183 (343)
T ss_dssp TSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-E-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSS
T ss_pred CCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-c-eeeeecccCCCceeeeeeeccccccccccCCC
Confidence 999999999999999999999999999999999999999999842 2 2222 37889999999999863
Q ss_pred -cEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC-CeEEEEEeCCCCCEEEE
Q 003279 651 -DLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSV 727 (834)
Q Consensus 651 -~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t-~~~~~~l~~h~~~I~sl 727 (834)
.+|++++.|+.|++||.. ......+. +...|.+++|+|++.+|++++.|+.|++||+.. ......+. +...|.++
T Consensus 184 ~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v 261 (343)
T 2xzm_R 184 APYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQI 261 (343)
T ss_dssp CCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEE
T ss_pred CCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEE
Confidence 478899999999999954 55555554 567799999999999999999999999999954 34444443 55679999
Q ss_pred EEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEee-----------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 728 CWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-----------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 728 ~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~-----------~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
+|+|++.+++++.|+.|++||+.+..... +..+. .|...|.+++|+|++.+|++++.|+.|++|++.+
T Consensus 262 ~~sp~~~~la~~~d~~v~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 262 AFNPKLQWVAVGTDQGVKIFNLMTQSKAP-VCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp EECSSSCEEEEEESSCEEEEESSSCCSCS-EEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred EECCCCCEEEEECCCCEEEEEeCCCCCCc-eEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 99999999988889999999998764322 22222 5677899999999999999999999999999865
Q ss_pred C
Q 003279 797 N 797 (834)
Q Consensus 797 ~ 797 (834)
+
T Consensus 341 g 341 (343)
T 2xzm_R 341 S 341 (343)
T ss_dssp E
T ss_pred c
Confidence 4
No 42
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.1e-34 Score=315.08 Aligned_cols=280 Identities=21% Similarity=0.354 Sum_probs=230.9
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
.++++|+.|+.|++|..... ..........+|.+.|.+++|+|++++||+|+.|++|+|||+..
T Consensus 29 ~~las~~~D~~i~iw~~~~~----------------~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~ 92 (345)
T 3fm0_A 29 TLLASCGGDRRIRIWGTEGD----------------SWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQ 92 (345)
T ss_dssp SCEEEEETTSCEEEEEEETT----------------EEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECC
T ss_pred CEEEEEcCCCeEEEEEcCCC----------------cceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccC
Confidence 68999999999999954322 11112234478999999999999999999999999999999887
Q ss_pred C--eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc--eeeeeccCCCCeEEEEEccCCCcEEEEEeCC
Q 003279 584 F--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 659 (834)
Q Consensus 584 ~--~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~--~i~~~~~h~~~V~sl~fspdg~~llasgs~D 659 (834)
+ +.+..+.+|...|.+++|+|++++|++|+.|++|++||+.+... .+..+.+|...|.+++|+|++. +|++++.|
T Consensus 93 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d 171 (345)
T 3fm0_A 93 DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE-LLASASYD 171 (345)
T ss_dssp C-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS-CEEEEETT
T ss_pred CCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC-EEEEEeCC
Confidence 6 45788899999999999999999999999999999999987542 3567788999999999999976 66799999
Q ss_pred CcEEEEECCCCcee--eEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC---------------CeEEEEEeC-C
Q 003279 660 SEIRYWSINNGSCA--GVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET---------------QVCRLKLQG-H 720 (834)
Q Consensus 660 g~I~lwDl~s~~~i--~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t---------------~~~~~~l~~-h 720 (834)
+.|++||++++... ..+. +...|.+++|+|++.+|++++.|+.|++||... ..++..+.+ |
T Consensus 172 ~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 251 (345)
T 3fm0_A 172 DTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFH 251 (345)
T ss_dssp SCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSC
T ss_pred CcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCC
Confidence 99999999887533 3443 466799999999999999999999999999632 234556665 8
Q ss_pred CCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc-e-----eEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEE
Q 003279 721 KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG-E-----CIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELW 792 (834)
Q Consensus 721 ~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~-~-----~i~~~~~~~~~I~svafspdg~-~L~sgs~dg~I~Iw 792 (834)
...|.+++|++++.+|++++ |+.|++|++...... . ..+....|...|.+++|+|++. +|++++.|+.|++|
T Consensus 252 ~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W 331 (345)
T 3fm0_A 252 SRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331 (345)
T ss_dssp SSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred CCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEE
Confidence 88999999999999999988 999999998765321 1 1223457889999999999984 89999999999999
Q ss_pred ECCCCeEE
Q 003279 793 NMTENKTL 800 (834)
Q Consensus 793 dl~~~~~~ 800 (834)
++.+++..
T Consensus 332 ~~~~~~~~ 339 (345)
T 3fm0_A 332 KYQRPEGL 339 (345)
T ss_dssp EECC----
T ss_pred EecCCCCc
Confidence 99887754
No 43
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.4e-36 Score=334.32 Aligned_cols=285 Identities=14% Similarity=0.186 Sum_probs=230.9
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC
Q 003279 547 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 547 ~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~--~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 624 (834)
.+..|.++|++++|+|++++||+|+.|+.|+|||+.++ +.+..+.+|...|.+++|+|++++|++++.|++|++||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 34457789999999999999999999999999999988 7788899999999999999999999999999999999999
Q ss_pred CCC--ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc---eeeEee--cCCCeeEEEEecCCCEEEEE
Q 003279 625 NPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFK--CQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 625 s~~--~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~---~i~~~~--~~~~i~~l~~sp~g~~ll~~ 697 (834)
++. .....+..|...|.+++|+|++. +|++++.|+.|++||+++++ +...+. +...|.+++|+|++.+|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 765 23566778999999999999976 56688999999999999877 355555 56789999999999999999
Q ss_pred EcCCeEEEEECC------------------CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc-ee
Q 003279 698 AIENYISILDVE------------------TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG-EC 757 (834)
Q Consensus 698 s~dg~I~iwDl~------------------t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~-~~ 757 (834)
+.|+.|++||++ .++++..+ +|...|.+++|+|++++|++++ |+.|++||+.++... ..
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 243 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA 243 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCccee
Confidence 999999999985 35566667 8999999999999999999998 999999999987431 12
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeE--------------------------------------
Q 003279 758 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT-------------------------------------- 799 (834)
Q Consensus 758 i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~-------------------------------------- 799 (834)
+..+..|...|.+++|+|++.+|++++.++.+ +|+......
T Consensus 244 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (377)
T 3dwl_C 244 LITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRS 322 (377)
T ss_dssp CCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-----------
T ss_pred eEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccc
Confidence 67788899999999999999988777655555 776642110
Q ss_pred -E--------------EeccCCCCeEEEEEeCCC-C---EEEEEecCCcEEEeC
Q 003279 800 -L--------------TLSAHDKLVSSLAASTVN-G---MVASASHDKCVKIWK 834 (834)
Q Consensus 800 -~--------------~l~~h~~~V~~lafspdg-~---~LaSgs~DG~I~IWd 834 (834)
+ ....|...|+++++.+.. . .|+||+.||.|+|||
T Consensus 323 ~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 323 TFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp --------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred cccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence 0 011299999999976644 3 699999999999997
No 44
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.6e-33 Score=304.33 Aligned_cols=268 Identities=24% Similarity=0.416 Sum_probs=238.3
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
.++++|+.|+.+++|...+. .....+.+|...|.+++|+|++++|++|+.|+.|++||+.+
T Consensus 36 ~~l~s~~~dg~i~iw~~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 96 (312)
T 4ery_A 36 EWLASSSADKLIKIWGAYDG-------------------KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 96 (312)
T ss_dssp SEEEEEETTSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CEEEEeeCCCeEEEEeCCCc-------------------ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC
Confidence 68999999999999965332 13456789999999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 663 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 663 (834)
++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+.++. .+..+..|...|.+++|+|++. +|++++.||.|+
T Consensus 97 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~ 174 (312)
T 4ery_A 97 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCR 174 (312)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-EEEEecCCCCcEEEEEEcCCCC-EEEEEeCCCcEE
Confidence 99999999999999999999999999999999999999999865 4778888999999999999976 677999999999
Q ss_pred EEECCCCceeeEeec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEE---EEEcCCCCEEEE
Q 003279 664 YWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS---VCWNTSGEYLAS 738 (834)
Q Consensus 664 lwDl~s~~~i~~~~~--~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~s---l~~spdg~~Las 738 (834)
+||+++++.+..+.. ...+..++|+|++.+|++++.|+.|++||+++++++..+.+|...+.+ ....+++.+|++
T Consensus 175 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 254 (312)
T 4ery_A 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254 (312)
T ss_dssp EEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEE
T ss_pred EEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEE
Confidence 999999988777643 456899999999999999999999999999999999999888765432 233467889999
Q ss_pred Ee-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE--cCCeEEEEECC
Q 003279 739 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG--CYETLELWNMT 795 (834)
Q Consensus 739 gs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs--~dg~I~Iwdl~ 795 (834)
++ |+.|++||+.++ ..+..+..|...|.+++|+|++..|++++ .|+.|++|+.+
T Consensus 255 g~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 255 GSEDNLVYIWNLQTK---EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CCTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ECCCCEEEEEECCCc---hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 88 999999999987 67888999999999999999999999987 58899999864
No 45
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-35 Score=331.40 Aligned_cols=284 Identities=14% Similarity=0.240 Sum_probs=236.9
Q ss_pred EEEEe-cCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCC---Ce---EEEEeccCCCCeEEEEECCCCCEEEEEeCC
Q 003279 544 EFQLI-PASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES---FT---VKSTLEEHTQWITDVRFSPSLSRLATSSAD 615 (834)
Q Consensus 544 ~~~~l-~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~IWd~~t---~~---~~~~l~~h~~~I~~l~fspdg~~Latgs~D 615 (834)
.+..+ .+|.+.|++++|+| ++++||+|+.||+|+|||+.+ +. ....+ .|...|++++|+|++.+|++++.|
T Consensus 54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d 132 (437)
T 3gre_A 54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKD 132 (437)
T ss_dssp EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETT
T ss_pred EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCC
Confidence 45666 89999999999999 999999999999999999876 33 23333 599999999999999999999999
Q ss_pred CeEEEEecC---CCCceeeeec----------c--CCCCeEEEE--EccCCCcEEEEEeCCCcEEEEECCCCceeeEeec
Q 003279 616 RTVRVWDTE---NPDYSLRTFT----------G--HSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 678 (834)
Q Consensus 616 g~I~IWDl~---s~~~~i~~~~----------~--h~~~V~sl~--fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~ 678 (834)
|.|++||+. ++.. ...+. . +...+.++. +++++ .++++++.|+.|++||+++++++..+..
T Consensus 133 g~i~vwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 210 (437)
T 3gre_A 133 GQIIVLKVNHYQQESE-VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLERLQIIEN 210 (437)
T ss_dssp SEEEEEEEEEEEETTE-EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEEEeccccCCce-eeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence 999999995 3322 22222 1 456667776 44664 4777999999999999999999988874
Q ss_pred ---CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe-CCCCCEEEEEEcC----CCCEEEEEe-CCeEEEEEc
Q 003279 679 ---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNT----SGEYLASVS-DELVRVWSI 749 (834)
Q Consensus 679 ---~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~-~h~~~I~sl~~sp----dg~~Lasgs-Dg~I~IwDl 749 (834)
...|.+++|+|++.+|++++.||.|++||+++++++..+. .|...|.+++|+| ++.+|++++ |+.|++||+
T Consensus 211 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 290 (437)
T 3gre_A 211 SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF 290 (437)
T ss_dssp CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence 5789999999999999999999999999999999999886 7888999996664 677999998 999999999
Q ss_pred CCCCCceeEEEeec--------------------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-Ee
Q 003279 750 GSGSKGECIHELSC--------------------------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL 802 (834)
Q Consensus 750 ~s~~~~~~i~~~~~--------------------------~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l 802 (834)
+++ .++..+.. |...|.+++|+ ++.+|++++.|+.|++||+.+++.. .+
T Consensus 291 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 366 (437)
T 3gre_A 291 VKG---HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAV 366 (437)
T ss_dssp TTT---EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred CCC---cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEE
Confidence 987 55555443 44568889999 7789999999999999999887644 22
Q ss_pred cc-------------------------------------CCCCeEEEEEeCC--CCEEEEEecCCcEEEeC
Q 003279 803 SA-------------------------------------HDKLVSSLAASTV--NGMVASASHDKCVKIWK 834 (834)
Q Consensus 803 ~~-------------------------------------h~~~V~~lafspd--g~~LaSgs~DG~I~IWd 834 (834)
.+ |...|++++|+++ +.+|++|+.||.|+||+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 367 ISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 22 8999999999998 77999999999999996
No 46
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.4e-34 Score=366.61 Aligned_cols=310 Identities=21% Similarity=0.379 Sum_probs=270.7
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
.++++|+.|+.|++|..... ..+..+.+|.+.|.+++|+|++++||+|+.|+.|+|||+.+
T Consensus 628 ~~l~s~~~d~~i~vw~~~~~-------------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 628 QRIASCGADKTLQVFKAETG-------------------EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp SEEEEEETTSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CEEEEEeCCCeEEEEECCCC-------------------CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 78999999999999966432 24567789999999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEECC--CCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCc
Q 003279 584 FTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 661 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 661 (834)
++.+..+.+|...|.+++|+| ++.++++++.|+.|++||+.++. .+..+.+|...|.+++|+|++. ++++++.||.
T Consensus 689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~ 766 (1249)
T 3sfz_A 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE-CRNTMFGHTNSVNHCRFSPDDE-LLASCSADGT 766 (1249)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-EEEEECCCSSCEEEEEECSSTT-EEEEEESSSE
T ss_pred CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-hhheecCCCCCEEEEEEecCCC-EEEEEECCCe
Confidence 999999999999999999999 56689999999999999999866 4778889999999999999977 6779999999
Q ss_pred EEEEECCCCceeeEee--------------------------------------------------------cCCCeeEE
Q 003279 662 IRYWSINNGSCAGVFK--------------------------------------------------------CQSGATQM 685 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~--------------------------------------------------------~~~~i~~l 685 (834)
|++||+.++.....+. +...+.++
T Consensus 767 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~ 846 (1249)
T 3sfz_A 767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYC 846 (1249)
T ss_dssp EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEE
T ss_pred EEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEE
Confidence 9999998775443321 23567889
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCce--------
Q 003279 686 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE-------- 756 (834)
Q Consensus 686 ~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~-------- 756 (834)
+|+|++..+++++.++.|++||+.++..+..+.+|...|.+++|+|++.+|++++ |+.|++||+.+.....
T Consensus 847 ~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~ 926 (1249)
T 3sfz_A 847 DFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEI 926 (1249)
T ss_dssp EECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEE
T ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeeccccee
Confidence 9999999999999999999999999999999999999999999999999999999 9999999975321000
Q ss_pred ------------------eEE--------EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCe
Q 003279 757 ------------------CIH--------ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLV 809 (834)
Q Consensus 757 ------------------~i~--------~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V 809 (834)
.+. ........+.+++|+|++.++++++.+|.|++||+.+++.+ .+.+|...|
T Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v 1006 (1249)
T 3sfz_A 927 DVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV 1006 (1249)
T ss_dssp EEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCC
T ss_pred eEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCce
Confidence 000 01123457899999999999999999999999999998877 667899999
Q ss_pred EEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 810 SSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 810 ~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.+++|+|++++|++++.||.|++||
T Consensus 1007 ~~l~~s~dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A 1007 RHIQFTADGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp CCEEECSSSSCEEEECSSSBEEEEE
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEE
Confidence 9999999999999999999999996
No 47
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-33 Score=317.18 Aligned_cols=288 Identities=22% Similarity=0.340 Sum_probs=230.6
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
..++++|+ ++.+++|...+................. ..........+...|.+++|+|||++||+|+.|+.|+|||+.
T Consensus 76 g~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~ 153 (393)
T 1erj_A 76 GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDP-ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE 153 (393)
T ss_dssp SSEEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCEEEEEc-CCcEEEEEecCCCEEEEecCcccccccc-ccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 36888876 6889999765432110000000000000 000011122345569999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 003279 583 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 662 (834)
Q Consensus 583 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 662 (834)
+++.+..+.+|...|.+++|+|++.+|++++.|++|++||+.++.. ...+. +...|.+++|+|....+|++|+.|+.|
T Consensus 154 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v 231 (393)
T 1erj_A 154 NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-SLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAV 231 (393)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSTTCCEEEEEETTSCE
T ss_pred CCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee-EEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcE
Confidence 9999999999999999999999999999999999999999998653 33333 667899999999545688899999999
Q ss_pred EEEECCCCceeeEee--------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC------------eEEEEEeCCCC
Q 003279 663 RYWSINNGSCAGVFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQ------------VCRLKLQGHKN 722 (834)
Q Consensus 663 ~lwDl~s~~~i~~~~--------~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~------------~~~~~l~~h~~ 722 (834)
++||++++..+..+. +...|.+++|+|++.+|++++.|+.|++||+++. .+...+.+|..
T Consensus 232 ~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~ 311 (393)
T 1erj_A 232 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 311 (393)
T ss_dssp EEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSS
T ss_pred EEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccC
Confidence 999999998877662 4567999999999999999999999999999753 45667888999
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC------CCCEEEEEEcCCeEEEEECC
Q 003279 723 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP------TFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 723 ~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafsp------dg~~L~sgs~dg~I~Iwdl~ 795 (834)
.|.+++|++++.+|++++ |+.|++||+.++ .++..+.+|...|.+++|++ ++.+|++++.|+.|+||++.
T Consensus 312 ~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~---~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 312 FVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp CEEEEEECGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEECCCC---eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 999999999999999999 999999999988 67888899999999999986 67899999999999999976
Q ss_pred CC
Q 003279 796 EN 797 (834)
Q Consensus 796 ~~ 797 (834)
..
T Consensus 389 ~~ 390 (393)
T 1erj_A 389 KI 390 (393)
T ss_dssp EC
T ss_pred cc
Confidence 53
No 48
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.5e-33 Score=318.43 Aligned_cols=299 Identities=17% Similarity=0.260 Sum_probs=258.5
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
.++++|+.|+.|++|..... ..+..+.+|.+.|++++|++++ +|++|+.||+|++||+.+
T Consensus 133 ~~l~sgs~dg~i~vwd~~~~-------------------~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~ 192 (464)
T 3v7d_B 133 NYVITGADDKMIRVYDSINK-------------------KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK 192 (464)
T ss_dssp TEEEEEETTSCEEEEETTTT-------------------EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTT
T ss_pred CEEEEEcCCCcEEEEECCCC-------------------cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCC
Confidence 58999999999999965332 3466788999999999999988 999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEEC--CCCCEEEEEeCCCeEEEEecCCCCce----------------------eeeeccCCCC
Q 003279 584 FTVKSTLEEHTQWITDVRFS--PSLSRLATSSADRTVRVWDTENPDYS----------------------LRTFTGHSTT 639 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fs--pdg~~Latgs~Dg~I~IWDl~s~~~~----------------------i~~~~~h~~~ 639 (834)
++.+..+.+|...|.+++|+ +++.+|++++.|++|++||+.+.... +..+.+|...
T Consensus 193 ~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (464)
T 3v7d_B 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272 (464)
T ss_dssp TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSC
T ss_pred CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccce
Confidence 99999999999999999998 57889999999999999999875432 4567789999
Q ss_pred eEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 003279 640 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 718 (834)
Q Consensus 640 V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~ 718 (834)
|.++... +. ++++++.|+.|++||+++++++..+. +...+.+++|+|++..+++++.|+.|++||+++++++..+.
T Consensus 273 v~~~~~~--~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 349 (464)
T 3v7d_B 273 VRTVSGH--GN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ 349 (464)
T ss_dssp EEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEEEcCC--CC-EEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Confidence 9888544 44 77799999999999999999988887 46779999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003279 719 GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 797 (834)
Q Consensus 719 ~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~ 797 (834)
+|...|.+++|+ +.+|++++ |+.|++||+.+.. ..... .+...+..++|++++.+|++++ |+.|++||+.++
T Consensus 350 ~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~---~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 350 GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS---RKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC---EEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc---eeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 999999999997 57888888 9999999999863 33333 3566788889999999888888 899999999999
Q ss_pred eEEE--eccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 798 KTLT--LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 798 ~~~~--l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
+.+. +..|...|.+++|+ +..++++++.||.+.+|
T Consensus 423 ~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 423 KLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp CEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred cEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence 9884 56889999999998 44566666778776655
No 49
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-34 Score=351.92 Aligned_cols=200 Identities=13% Similarity=0.129 Sum_probs=168.1
Q ss_pred CceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEE
Q 003279 478 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 557 (834)
Q Consensus 478 ~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~s 557 (834)
...++.|++++ .++++|+.|+.|++|..... . ......|...|.+
T Consensus 19 ~V~~lafspdg---------------~~lAsgs~Dg~I~lw~~~~~-------------------~-~~~~~~~~~~V~~ 63 (902)
T 2oaj_A 19 KPIAAAFDFTQ---------------NLLAIATVTGEVHIYGQQQV-------------------E-VVIKLEDRSAIKE 63 (902)
T ss_dssp CEEEEEEETTT---------------TEEEEEETTSEEEEECSTTC-------------------E-EEEECSSCCCEEE
T ss_pred CcEEEEECCCC---------------CEEEEEeCCCEEEEEeCCCc-------------------E-EEEEcCCCCCEEE
Confidence 45566666654 78999999999999953211 1 1122357889999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCcee-------
Q 003279 558 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL------- 630 (834)
Q Consensus 558 l~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i------- 630 (834)
++|+| |++|++++.|++|+|||+.+++.+..+. |...|++++|+|++++|++|+.||+|++||+.+.....
T Consensus 64 l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~ 141 (902)
T 2oaj_A 64 MRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQ 141 (902)
T ss_dssp EEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHH
T ss_pred EEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccc
Confidence 99999 8899999999999999999999988885 77899999999999999999999999999998765311
Q ss_pred ---eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC-------------------CCeeEEEEe
Q 003279 631 ---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-------------------SGATQMRFQ 688 (834)
Q Consensus 631 ---~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~-------------------~~i~~l~~s 688 (834)
..+.+|...|.+++|+|++..++++|+.||.| +||+++++++..+..+ ..|.+++|+
T Consensus 142 ~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs 220 (902)
T 2oaj_A 142 KSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH 220 (902)
T ss_dssp HHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred ccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence 23467899999999999866688899999999 9999999988877654 569999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEE
Q 003279 689 PRLGRILAAAIENYISILDVETQVCRL 715 (834)
Q Consensus 689 p~g~~ll~~s~dg~I~iwDl~t~~~~~ 715 (834)
|++.+|++++.|+.|++||+++++++.
T Consensus 221 pdg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 221 PNSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp TTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred CCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 999999999999999999998766543
No 50
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-35 Score=330.72 Aligned_cols=279 Identities=20% Similarity=0.307 Sum_probs=245.1
Q ss_pred CCeEEEEEcCCCC-EEEEE----------eCCCcEEEEeCCCCe---EEEEeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 003279 553 SKVESCHFSPDGK-LLATG----------GHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 618 (834)
Q Consensus 553 ~~V~sl~fSpdg~-~Lasg----------s~Dg~I~IWd~~t~~---~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I 618 (834)
..|.+++|+|+++ +|++| +.|+.|+|||+.++. .+..+ .|...|++++|+|++.+|++++.||.|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v 91 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSL 91 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeE
Confidence 3588999999997 99999 889999999999875 33334 588999999999999999999999999
Q ss_pred EEEecCC---CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc------eeeEe----ecCCCeeEE
Q 003279 619 RVWDTEN---PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------CAGVF----KCQSGATQM 685 (834)
Q Consensus 619 ~IWDl~s---~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~------~i~~~----~~~~~i~~l 685 (834)
++||+.+ +...+..+.+|...|.+++|+|++..+|++++.|+.|++||+.+++ ....+ .+...+.++
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL 171 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEE
T ss_pred EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEE
Confidence 9999987 2335788889999999999999966688899999999999999876 33322 356789999
Q ss_pred EEecC-CCEEEEEEcCCeEEEEECCCCeEEEEEeCC------CCCEEEEEEcCCC-CEEEEEe-CC---eEEEEEcCCCC
Q 003279 686 RFQPR-LGRILAAAIENYISILDVETQVCRLKLQGH------KNQVHSVCWNTSG-EYLASVS-DE---LVRVWSIGSGS 753 (834)
Q Consensus 686 ~~sp~-g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h------~~~I~sl~~spdg-~~Lasgs-Dg---~I~IwDl~s~~ 753 (834)
+|+|+ +..|++++.|+.|++||+++++.+..+..| ...|.+++|+|++ .+|++++ |+ .|++||+++..
T Consensus 172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~ 251 (416)
T 2pm9_A 172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN 251 (416)
T ss_dssp EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence 99999 788999999999999999999999988876 7899999999997 6888888 77 99999999863
Q ss_pred CceeEEEee-cCCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCC-CEEEEEecCCc
Q 003279 754 KGECIHELS-CTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKC 829 (834)
Q Consensus 754 ~~~~i~~~~-~~~~~I~svafsp-dg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg-~~LaSgs~DG~ 829 (834)
..+..+. .|...|.+++|+| ++.+|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++ .+|++++.||.
T Consensus 252 --~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~ 329 (416)
T 2pm9_A 252 --TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK 329 (416)
T ss_dssp --SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred --CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc
Confidence 3455566 7889999999999 9999999999999999999998877 677899999999999999 89999999999
Q ss_pred EEEeC
Q 003279 830 VKIWK 834 (834)
Q Consensus 830 I~IWd 834 (834)
|+|||
T Consensus 330 i~iw~ 334 (416)
T 2pm9_A 330 IEVQT 334 (416)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 51
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.5e-34 Score=309.64 Aligned_cols=278 Identities=17% Similarity=0.245 Sum_probs=243.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc--
Q 003279 551 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-- 628 (834)
Q Consensus 551 H~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~-- 628 (834)
|.+.|.+++|+|||++++++..++.+.+|+...........+|...|++++|+|++++|++++ ||.|++||+.++..
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 455799999999999999998888888877666555555558999999999999999999998 99999999987543
Q ss_pred eeeeec--cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc--eeeEee-cCCCeeEEEEecCCCEEEEEEcCCeE
Q 003279 629 SLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFK-CQSGATQMRFQPRLGRILAAAIENYI 703 (834)
Q Consensus 629 ~i~~~~--~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~--~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I 703 (834)
.+..+. .|...|.+++|+|++. ++++++.|+.|++||+++++ ....+. +...+.+++|+|++.++++++.|+.|
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 165 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeecccccCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 122222 7899999999999976 66688899999999999887 344444 35669999999999999999999999
Q ss_pred EEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003279 704 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 782 (834)
Q Consensus 704 ~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~s 782 (834)
++||+++++.+..+..|...|.+++|+|++.+|++++ |+.|++||++++ ..+..+. +...+.+++|+|++.+|++
T Consensus 166 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~-~~~~v~~~~~s~~~~~l~~ 241 (337)
T 1gxr_A 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---RQLQQHD-FTSQIFSLGYCPTGEWLAV 241 (337)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEE-CSSCEEEEEECTTSSEEEE
T ss_pred EEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC---ceEeeec-CCCceEEEEECCCCCEEEE
Confidence 9999999999999999999999999999999999998 999999999987 5555543 6778999999999999999
Q ss_pred EEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 783 IGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 783 gs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++.++.|++||+.+++...+..|...|.+++|+|++++|++++.||.|++||
T Consensus 242 ~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 242 GMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 9999999999999999888999999999999999999999999999999996
No 52
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-35 Score=344.63 Aligned_cols=311 Identities=9% Similarity=0.048 Sum_probs=234.2
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCC------CCEEEEEeCCCcE
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD------GKLLATGGHDKKA 576 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpd------g~~Lasgs~Dg~I 576 (834)
...+++++.|++|++|....... .......+.+|.+.|.+|+|+|+ +.+||+|+.||+|
T Consensus 173 ~~~laS~s~D~tI~iWd~~~~~~---------------~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgtv 237 (524)
T 2j04_B 173 LEMFDKEKHSSCIQIFKMNTSTL---------------HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTI 237 (524)
T ss_dssp ---------CEEEEEEEEETTTC---------------CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCE
T ss_pred hhhhccCCCCceEEEEEccCCCC---------------CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeE
Confidence 34678899999999996533210 11123456788999999999997 5799999999999
Q ss_pred EEEeCCCCeE-----------EEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEE--
Q 003279 577 VLWCTESFTV-----------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL-- 643 (834)
Q Consensus 577 ~IWd~~t~~~-----------~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl-- 643 (834)
+|||+.++.. ...+.+|...|++++|+++ ..|++|+.||+|++||+.++..+...+.+|...|.+|
T Consensus 238 rlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~ 316 (524)
T 2j04_B 238 NFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVST 316 (524)
T ss_dssp EEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEE
T ss_pred EEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEE
Confidence 9999986532 2467889999999999986 4899999999999999997665566788999999999
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC---CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 003279 644 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH 720 (834)
Q Consensus 644 ~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~---~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h 720 (834)
+|++++..+|++|+.|++|+|||++++++...+..+ ..+.+++|+|++..+++++.|+.|++||++++.++..+.+|
T Consensus 317 ~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH 396 (524)
T 2j04_B 317 AYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSR 396 (524)
T ss_dssp ECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEEC
T ss_pred EcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecC
Confidence 567776468999999999999999988877666532 24789999999999999999999999999999888888899
Q ss_pred CCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-----cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 721 KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-----CTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 721 ~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~-----~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
...|++|+|+|++.+|++|+ |++|++||+... .+.... .+...+.+++|+|++..+. ...+-.+..|+.
T Consensus 397 ~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~----~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~~~~~~~~~ 471 (524)
T 2j04_B 397 ETTITAIGVSRLHPMVLAGSADGSLIITNAARR----LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDSSYEVYPLTV 471 (524)
T ss_dssp SSCEEEEECCSSCCBCEEEETTTEEECCBSCSS----TTTCC------CCCCEEEECBCCSSSCEEE-ECCCCCCCC---
T ss_pred CCceEEEEeCCCCCeEEEEECCCEEEEEechHh----hccccccCccceeeeEEEEeccCCCCCeEE-ccCCceeccccc
Confidence 99999999999999999999 999999998653 111111 1122577899999998442 222222333333
Q ss_pred CCCeEEEeccCCCCeEEEEEeCCCC---EEEEEecCCcEEEeC
Q 003279 795 TENKTLTLSAHDKLVSSLAASTVNG---MVASASHDKCVKIWK 834 (834)
Q Consensus 795 ~~~~~~~l~~h~~~V~~lafspdg~---~LaSgs~DG~I~IWd 834 (834)
.......+.+|...|.+|+|+|++. +||+|+.||.|+||+
T Consensus 472 ~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 472 NDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp ----------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred CCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence 3444457889999999999999964 999999999999995
No 53
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.2e-33 Score=344.76 Aligned_cols=319 Identities=19% Similarity=0.280 Sum_probs=276.8
Q ss_pred CceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEE
Q 003279 478 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 557 (834)
Q Consensus 478 ~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~s 557 (834)
...++.|++++ .++++|+.|+.|++|..... ..+..+.+|.+.|++
T Consensus 15 ~v~~i~~sp~~---------------~~la~~~~~g~v~iwd~~~~-------------------~~~~~~~~~~~~v~~ 60 (814)
T 3mkq_A 15 RVKGIDFHPTE---------------PWVLTTLYSGRVEIWNYETQ-------------------VEVRSIQVTETPVRA 60 (814)
T ss_dssp CEEEEEECSSS---------------SEEEEEETTSEEEEEETTTT-------------------EEEEEEECCSSCEEE
T ss_pred ceEEEEECCCC---------------CEEEEEeCCCEEEEEECCCC-------------------ceEEEEecCCCcEEE
Confidence 45566676655 78999999999999965332 245677899999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCC
Q 003279 558 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS 637 (834)
Q Consensus 558 l~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~ 637 (834)
++|+|++++|++|+.||.|+|||+.+++.+..+.+|.+.|++++|+|++.+|++++.||.|++||+.++......+.+|.
T Consensus 61 ~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 140 (814)
T 3mkq_A 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE 140 (814)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCS
T ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998766678888999
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC--CCeeEEEEec--CCCEEEEEEcCCeEEEEECCCCeE
Q 003279 638 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQP--RLGRILAAAIENYISILDVETQVC 713 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~--~~i~~l~~sp--~g~~ll~~s~dg~I~iwDl~t~~~ 713 (834)
..|.+++|+|++..++++++.||.|++||+.++.....+..+ ..+.+++|+| ++.++++++.|+.|++||++++.+
T Consensus 141 ~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 220 (814)
T 3mkq_A 141 HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220 (814)
T ss_dssp SCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEE
T ss_pred CcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE
Confidence 999999999944557889999999999999988877766643 6799999999 999999999999999999999999
Q ss_pred EEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE-EEEEEcCCeEEE
Q 003279 714 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS-LLVIGCYETLEL 791 (834)
Q Consensus 714 ~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~-L~sgs~dg~I~I 791 (834)
+..+.+|...|.+++|+|++.+|++++ |+.|++||+.++ ..+..+..+...+.+++|+|++.. +++++.++.+.+
T Consensus 221 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 297 (814)
T 3mkq_A 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY---KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (814)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---SEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEE
T ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEE
Confidence 999999999999999999999999999 999999999987 678888888999999999999874 366666778888
Q ss_pred EECCCCe----------EEE----------------------------------eccCCCCeEEEEEeCCCCEEEEEecC
Q 003279 792 WNMTENK----------TLT----------------------------------LSAHDKLVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 792 wdl~~~~----------~~~----------------------------------l~~h~~~V~~lafspdg~~LaSgs~D 827 (834)
|++.... .+. +..+...+.+++|+|+|++|++++ |
T Consensus 298 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~ 376 (814)
T 3mkq_A 298 LSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-D 376 (814)
T ss_dssp EECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-T
T ss_pred EEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-C
Confidence 9875432 111 123445688999999999999888 8
Q ss_pred CcEEEeC
Q 003279 828 KCVKIWK 834 (834)
Q Consensus 828 G~I~IWd 834 (834)
|.+.||+
T Consensus 377 ~~~~i~~ 383 (814)
T 3mkq_A 377 GEYVIYT 383 (814)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
Confidence 8899985
No 54
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.3e-33 Score=317.72 Aligned_cols=296 Identities=20% Similarity=0.361 Sum_probs=261.8
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
..++++|+.|+.|++|..... ..+..+.+|.+.|++++|+ +.+|++|+.||+|++||+.
T Consensus 129 g~~l~sg~~dg~i~vwd~~~~-------------------~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 129 GNRIVSGSDDNTLKVWSAVTG-------------------KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTC-------------------CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred CCEEEEEECCCcEEEEECCCC-------------------cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence 368899999999999965432 2356778999999999998 5699999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 003279 583 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 662 (834)
Q Consensus 583 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 662 (834)
+++.+..+.+|...|.+++|+ +..|++|+.||.|++||+.++. .+..+.+|...|.+++| ++. ++++++.||.|
T Consensus 188 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i 261 (445)
T 2ovr_B 188 TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQ-CLHVLMGHVAAVRCVQY--DGR-RVVSGAYDFMV 261 (445)
T ss_dssp TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCC-EEEEEECCSSCEEEEEE--CSS-CEEEEETTSCE
T ss_pred cCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCc-EEEEEcCCcccEEEEEE--CCC-EEEEEcCCCEE
Confidence 999999999999999999995 5689999999999999999866 47788899999999999 344 67799999999
Q ss_pred EEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-
Q 003279 663 RYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 740 (834)
Q Consensus 663 ~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs- 740 (834)
++||+++++++..+.. ...+.++.| ++.++++++.|+.|++||+++++++..+.+|...+.++.++ +.+|++++
T Consensus 262 ~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~ 337 (445)
T 2ovr_B 262 KVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNA 337 (445)
T ss_dssp EEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEET
T ss_pred EEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeC
Confidence 9999999999888874 567888888 78899999999999999999999999999999999998875 66888888
Q ss_pred CCeEEEEEcCCCCCceeEEEeec---CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE-e-----ccCCCCeEE
Q 003279 741 DELVRVWSIGSGSKGECIHELSC---TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-L-----SAHDKLVSS 811 (834)
Q Consensus 741 Dg~I~IwDl~s~~~~~~i~~~~~---~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~-l-----~~h~~~V~~ 811 (834)
|+.|++||++++ ..+..+.. |...|.+++|+ +.+|++++.|+.|++||+.+++.+. + ..|.+.|++
T Consensus 338 dg~i~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 412 (445)
T 2ovr_B 338 DSTVKIWDIKTG---QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR 412 (445)
T ss_dssp TSCEEEEETTTC---CEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEE
T ss_pred CCeEEEEECCCC---cEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEE
Confidence 999999999887 56667665 78889999996 5799999999999999999998773 3 378899999
Q ss_pred EEEeCCCCEEEEEecCCc----EEEeC
Q 003279 812 LAASTVNGMVASASHDKC----VKIWK 834 (834)
Q Consensus 812 lafspdg~~LaSgs~DG~----I~IWd 834 (834)
++|+|++.+|++|+.||+ |.|||
T Consensus 413 ~~~s~~~~~la~~~~dg~~~~~l~v~d 439 (445)
T 2ovr_B 413 IRASNTKLVCAVGSRNGTEETKLLVLD 439 (445)
T ss_dssp EEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred EEecCCEEEEEEcccCCCCccEEEEEE
Confidence 999999999999999998 99996
No 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.3e-33 Score=320.00 Aligned_cols=280 Identities=18% Similarity=0.302 Sum_probs=246.5
Q ss_pred eEEEEecCCCCCe-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 003279 543 TEFQLIPASTSKV-ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 621 (834)
Q Consensus 543 ~~~~~l~gH~~~V-~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 621 (834)
.....+.+|.+.| .|+.| ++++|++|+.||+|++||+.+++.+..+.+|.+.|++++|++++ +|++|+.||+|++|
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 3456788999885 66666 56799999999999999999999999999999999999999987 99999999999999
Q ss_pred ecCCCCceeeeeccCCCCeEEEEEccC-CCcEEEEEeCCCcEEEEECCCCceee-----------------------Eee
Q 003279 622 DTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNGSCAG-----------------------VFK 677 (834)
Q Consensus 622 Dl~s~~~~i~~~~~h~~~V~sl~fspd-g~~llasgs~Dg~I~lwDl~s~~~i~-----------------------~~~ 677 (834)
|+.++. .+..+.+|...|.+++|++. +..++++++.|+.|++||++++.... .+.
T Consensus 189 d~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
T 3v7d_B 189 DIKKGC-CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267 (464)
T ss_dssp ETTTTE-EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred ECCCCc-EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence 999865 47888899999999999962 34578899999999999998876432 222
Q ss_pred -cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc
Q 003279 678 -CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG 755 (834)
Q Consensus 678 -~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~ 755 (834)
+...+.+ +++++.++++++.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++ |+.|++||++++
T Consensus 268 ~~~~~v~~--~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~--- 342 (464)
T 3v7d_B 268 GHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG--- 342 (464)
T ss_dssp CCSSCEEE--EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT---
T ss_pred CccceEEE--EcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---
Confidence 2233444 477889999999999999999999999999999999999999999999999999 999999999987
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 756 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 756 ~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.++..+..|...|.+++|+ +.+|++++.|+.|++||+.++.......|...+..++|++++.+|++++ ||.|+|||
T Consensus 343 ~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd 418 (464)
T 3v7d_B 343 ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYN 418 (464)
T ss_dssp EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence 7888999999999999998 4789999999999999999988776667888899999999999999998 89999996
No 56
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.2e-33 Score=329.96 Aligned_cols=302 Identities=18% Similarity=0.234 Sum_probs=251.7
Q ss_pred eEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCC---CeEEEEEcCC-CCEEEEEeCCCcEEEEe
Q 003279 505 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPD-GKLLATGGHDKKAVLWC 580 (834)
Q Consensus 505 ~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~---~V~sl~fSpd-g~~Lasgs~Dg~I~IWd 580 (834)
++++++.|+.+++|.... ...+..+.+|.. .|.+++|+|+ +++|++++.|+.|++||
T Consensus 175 ~l~~~~~d~~v~vwd~~~-------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 235 (615)
T 1pgu_A 175 RSMTVGDDGSVVFYQGPP-------------------FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 235 (615)
T ss_dssp EEEEEETTTEEEEEETTT-------------------BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEE
T ss_pred EEEEEeCCCcEEEEeCCC-------------------cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence 789999999999996322 134567889999 9999999999 99999999999999999
Q ss_pred CCCCeEEEEe-c---cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCce---------------------------
Q 003279 581 TESFTVKSTL-E---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--------------------------- 629 (834)
Q Consensus 581 ~~t~~~~~~l-~---~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~--------------------------- 629 (834)
+.+++.+..+ . .|...|.+++|+ ++.+|++++.|+.|++||+.++...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 314 (615)
T 1pgu_A 236 GKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 314 (615)
T ss_dssp TTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEE
T ss_pred CCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEE
Confidence 9999999999 6 899999999999 9999999999999999999854321
Q ss_pred -----------------eeeeccCCCCeEEEEEccC---------------------------------CCcEEEEEeCC
Q 003279 630 -----------------LRTFTGHSTTVMSLDFHPS---------------------------------KEDLLCSCDNN 659 (834)
Q Consensus 630 -----------------i~~~~~h~~~V~sl~fspd---------------------------------g~~llasgs~D 659 (834)
+..+.+|...|.+++| |+ +. .+++++.|
T Consensus 315 ~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d 392 (615)
T 1pgu_A 315 LSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQ-EYSSISWD 392 (615)
T ss_dssp EETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTT-CCEEEETT
T ss_pred EECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCc-EEEEEeCC
Confidence 1222334444444444 32 23 34456666
Q ss_pred CcEEEEECC----------------------------------CCceeeEeecCCCeeEEEEecCCCEEEEEEc-CCeEE
Q 003279 660 SEIRYWSIN----------------------------------NGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYIS 704 (834)
Q Consensus 660 g~I~lwDl~----------------------------------s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg~I~ 704 (834)
+.|++||+. +++.+..+.+...+.+++|+ +.++++++. |+.|+
T Consensus 393 ~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~ 470 (615)
T 1pgu_A 393 DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQ 470 (615)
T ss_dssp TEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEE
T ss_pred CCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEE
Confidence 666666554 34445555566778888888 789999999 99999
Q ss_pred EEECCCCeEE-EEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec-CCCceEEEEEeC------
Q 003279 705 ILDVETQVCR-LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHP------ 775 (834)
Q Consensus 705 iwDl~t~~~~-~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-~~~~I~svafsp------ 775 (834)
+||+.++... ..+..|...|++++|+|++++|++++ |+.|++||+.++ +.+..+.. |...|.+++|+|
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~h~~~v~~~~~sp~~~~~~ 547 (615)
T 1pgu_A 471 VFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR---EVKTSRWAFRTSKINAISWKPAEKGAN 547 (615)
T ss_dssp EEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEECCSCCCSSCEEEEEECCCC----
T ss_pred EEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC---cceeEeecCCCCceeEEEEcCcccccc
Confidence 9999988665 66778999999999999999999999 999999999987 67777777 899999999999
Q ss_pred ----CCCEEEEEEcCCeEEEEECCCC-eEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 776 ----TFPSLLVIGCYETLELWNMTEN-KTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 776 ----dg~~L~sgs~dg~I~Iwdl~~~-~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++.+|++++.|+.|++||+.++ +.+ .+.+|...|++++|+|++. |++++.||.|+|||
T Consensus 548 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 548 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 611 (615)
T ss_dssp --CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred ccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEe
Confidence 9999999999999999999987 444 6778999999999999999 99999999999996
No 57
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.5e-34 Score=322.91 Aligned_cols=284 Identities=19% Similarity=0.335 Sum_probs=241.8
Q ss_pred CCceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeE
Q 003279 477 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 556 (834)
Q Consensus 477 ~~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~ 556 (834)
....++.|++++ .++++|+.|+.|++|..... .....+.+|...|.
T Consensus 67 ~~V~~~~~sp~~---------------~~l~s~s~D~~v~iWd~~~~-------------------~~~~~~~~h~~~v~ 112 (380)
T 3iz6_a 67 GKVYSLDWTPEK---------------NWIVSASQDGRLIVWNALTS-------------------QKTHAIKLHCPWVM 112 (380)
T ss_dssp SCEEEEEECTTS---------------SCEEEEETTSEEEEEETTTT-------------------EEEEEEECCCTTCC
T ss_pred cEEEEEEEcCCC---------------CEEEEEeCCCeEEEEECCCC-------------------ccceEEecCCCCEE
Confidence 356667777655 68999999999999965332 23567789999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCe-------EEEEeccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCCCc
Q 003279 557 SCHFSPDGKLLATGGHDKKAVLWCTESFT-------VKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY 628 (834)
Q Consensus 557 sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~-------~~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~s~~~ 628 (834)
+++|+|+|++||+|+.|+.|+|||+.+.. ....+.+|.+.|.++.|.|+ +..|++|+.|++|++||+.++..
T Consensus 113 ~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~ 192 (380)
T 3iz6_a 113 ECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR 192 (380)
T ss_dssp CCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE
T ss_pred EEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE
Confidence 99999999999999999999999987532 34567899999999999996 45799999999999999998764
Q ss_pred eeeee-----ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC-CCceeeEee-cCCCeeEEEEecCCCEEEEEEcCC
Q 003279 629 SLRTF-----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFK-CQSGATQMRFQPRLGRILAAAIEN 701 (834)
Q Consensus 629 ~i~~~-----~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~-s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg 701 (834)
+..+ .+|...|.+++|++.+..+|++|+.|+.|++||++ .+..+..+. +...|.+++|+|++.+|++++.|+
T Consensus 193 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~ 271 (380)
T 3iz6_a 193 -ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDG 271 (380)
T ss_dssp -EEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSS
T ss_pred -EEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCC
Confidence 4444 67999999999988656788899999999999998 446666665 467799999999999999999999
Q ss_pred eEEEEECCCCeEEEEEeCCCC-------CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe----ecCCCceE
Q 003279 702 YISILDVETQVCRLKLQGHKN-------QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL----SCTGNKFH 769 (834)
Q Consensus 702 ~I~iwDl~t~~~~~~l~~h~~-------~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~----~~~~~~I~ 769 (834)
.|++||++++..+..+..+.. .|++++|+|+|.+|++++ |+.|++||+..+ +.+..+ ..|...|.
T Consensus 272 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~---~~~~~~~~~~~~h~~~v~ 348 (380)
T 3iz6_a 272 TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA---EMVLNLGTLQNSHEGRIS 348 (380)
T ss_dssp CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC---CEEEEECCSCSSCCCCCC
T ss_pred eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC---ceEEEEecccCCCCCceE
Confidence 999999999998888765432 489999999999999999 999999999887 455444 57889999
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 003279 770 SCVFHPTFPSLLVIGCYETLELWNMTENK 798 (834)
Q Consensus 770 svafspdg~~L~sgs~dg~I~Iwdl~~~~ 798 (834)
+++|+|++.+|++++.|+.|+||++...+
T Consensus 349 ~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 349 CLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 99999999999999999999999998654
No 58
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.8e-33 Score=330.62 Aligned_cols=303 Identities=17% Similarity=0.290 Sum_probs=263.0
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCC-eEEEEEcC--CCCEEEEEeCCCcEEEEe
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK-VESCHFSP--DGKLLATGGHDKKAVLWC 580 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~-V~sl~fSp--dg~~Lasgs~Dg~I~IWd 580 (834)
+++++++ ++.+.+|...+... .......+.+|.+. |++++|+| ++++||+|+.||.|+|||
T Consensus 31 ~~l~~~~-~~~v~v~~~~~~~~---------------~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~ 94 (615)
T 1pgu_A 31 NAIAYPC-GKSAFVRCLDDGDS---------------KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG 94 (615)
T ss_dssp TEEEEEE-TTEEEEEECCSSCC---------------SSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred CEEEEec-CCeEEEEECCCCCC---------------ccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence 6777777 78899996543210 01235678899999 99999999 999999999999999999
Q ss_pred CCCC--------eEEEEeccCCCCeEEEEECCCCCEEEEEeCC----CeEEEEecCCCCceeeeeccCCCCeEEEEEccC
Q 003279 581 TESF--------TVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 648 (834)
Q Consensus 581 ~~t~--------~~~~~l~~h~~~I~~l~fspdg~~Latgs~D----g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspd 648 (834)
+.++ +.+..+..|...|.+++|+|++++|++++.+ +.|++||.. . .+..+.+|...|.+++|+|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~--~-~~~~~~~~~~~v~~~~~~~~ 171 (615)
T 1pgu_A 95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG--N-SLGEVSGHSQRINACHLKQS 171 (615)
T ss_dssp EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC--C-EEEECCSCSSCEEEEEECSS
T ss_pred CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC--C-cceeeecCCccEEEEEECCC
Confidence 9754 6778888999999999999999999999988 789999833 3 57788899999999999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCceeeEeec-CC---CeeEEEEecC-CCEEEEEEcCCeEEEEECCCCeEEEEE-e---C
Q 003279 649 KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QS---GATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKL-Q---G 719 (834)
Q Consensus 649 g~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~---~i~~l~~sp~-g~~ll~~s~dg~I~iwDl~t~~~~~~l-~---~ 719 (834)
+..++++++.|+.|++||+.+++.+..+.. .. .+.+++|+|+ +.++++++.|+.|++||+++++.+..+ . .
T Consensus 172 ~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 251 (615)
T 1pgu_A 172 RPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEP 251 (615)
T ss_dssp SSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBC
T ss_pred CCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccc
Confidence 887888999999999999999999888874 44 6999999999 999999999999999999999999998 6 8
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC----CCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 720 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT----GNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 720 h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~----~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
|...|.+++|+ ++.+|++++ |+.|++||++++ ..+..+..+ ...+.++.|. ++.++++++.++.|++||+
T Consensus 252 ~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~ 326 (615)
T 1pgu_A 252 VQGGIFALSWL-DSQKFATVGADATIRVWDVTTS---KCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYEL 326 (615)
T ss_dssp CCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT---EEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEET
T ss_pred cCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC---cEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEEC
Confidence 99999999999 999999999 999999999987 667776665 3667888886 8899999999999999999
Q ss_pred CCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 795 TENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 795 ~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.+++.+ .+..|...|.+++| |+ |++++.||.|++||
T Consensus 327 ~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~ 363 (615)
T 1pgu_A 327 GHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWS 363 (615)
T ss_dssp TEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETT
T ss_pred CCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEE
Confidence 987776 67788888999988 77 77777888888875
No 59
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=8.3e-33 Score=300.01 Aligned_cols=278 Identities=15% Similarity=0.251 Sum_probs=242.6
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
..++++|+.|++|++|....... ........+.+|...|.+++|+|++++|++|+.|+.|++|+..
T Consensus 51 ~~~l~S~s~D~~i~vWd~~~~~~--------------~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~ 116 (340)
T 4aow_A 51 PDMILSASRDKTIIMWKLTRDET--------------NYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT 116 (340)
T ss_dssp TTEEEEEETTSCEEEEEECCSSS--------------CSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCEEEEEcCCCeEEEEECCCCCc--------------ccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeec
Confidence 36899999999999997654321 1223467789999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCC-cEEEEEeCCCc
Q 003279 583 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSE 661 (834)
Q Consensus 583 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~-~llasgs~Dg~ 661 (834)
..........+...+..+.+++++.+|++++.|+.+++||+...........+|...|.+++|++++. .++++++.|+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~ 196 (340)
T 4aow_A 117 TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL 196 (340)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSC
T ss_pred ccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCE
Confidence 99999998899999999999999999999999999999999876665666778999999999998754 46788999999
Q ss_pred EEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 003279 662 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 740 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs 740 (834)
|++||+++++++..+.. ...|.+++|+|++.+|++++.|+.|++||+++.+.+..+.. ...|.+++|+|++.+++++.
T Consensus 197 i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~ 275 (340)
T 4aow_A 197 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLCAAT 275 (340)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSSEEEEEE
T ss_pred EEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCceeeccC
Confidence 99999999998888764 56799999999999999999999999999999999988884 46899999999999888888
Q ss_pred CCeEEEEEcCCCCCceeEEE---------eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 003279 741 DELVRVWSIGSGSKGECIHE---------LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 798 (834)
Q Consensus 741 Dg~I~IwDl~s~~~~~~i~~---------~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~ 798 (834)
|+.|++||+++. ..+.. ...|...|.+++|+|++++|++++.|+.|+|||+.+|+
T Consensus 276 d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 276 GPSIKIWDLEGK---IIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp TTEEEEEETTTT---EEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCEEEEEECCCC---eEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 999999999876 33333 34577899999999999999999999999999999875
No 60
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-33 Score=308.82 Aligned_cols=273 Identities=23% Similarity=0.414 Sum_probs=216.7
Q ss_pred eEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEe-cC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 505 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 505 ~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l-~g-H~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
++++|+.|+.|++|...... +..+..+ .+ |.+.|.+++|+|++++||+|+.|++|+|||++
T Consensus 26 ~las~~~D~~i~lw~~~~~~-----------------~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~ 88 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDD-----------------FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKE 88 (330)
T ss_dssp EEEEEESSSCEEEEECSSSC-----------------CEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-
T ss_pred EEEEEcCCCEEEEEEecCCC-----------------eEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcc
Confidence 88999999999999654321 1223344 34 99999999999999999999999999999985
Q ss_pred -------CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC---ceeeeeccCCCCeEEEEEccCCCcE
Q 003279 583 -------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---YSLRTFTGHSTTVMSLDFHPSKEDL 652 (834)
Q Consensus 583 -------t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~---~~i~~~~~h~~~V~sl~fspdg~~l 652 (834)
..+.+..+.+|...|.+++|+|++++|++|+.|++|+|||+.... ..+..+.+|...|.+++|+|++. +
T Consensus 89 ~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~ 167 (330)
T 2hes_X 89 ESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-L 167 (330)
T ss_dssp ------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-E
T ss_pred cCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC-E
Confidence 345677889999999999999999999999999999999995322 34667889999999999999976 7
Q ss_pred EEEEeCCCcEEEEECCCC--ceeeEee-cCCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCC--------eEEEEEeC
Q 003279 653 LCSCDNNSEIRYWSINNG--SCAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ--------VCRLKLQG 719 (834)
Q Consensus 653 lasgs~Dg~I~lwDl~s~--~~i~~~~-~~~~i~~l~~sp~--g~~ll~~s~dg~I~iwDl~t~--------~~~~~l~~ 719 (834)
|++++.|+.|++||+.++ +++..+. +...|.+++|+|+ +..|++++.|+.|++||++.+ .+...+..
T Consensus 168 l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~ 247 (330)
T 2hes_X 168 LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD 247 (330)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS
T ss_pred EEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc
Confidence 779999999999999876 5666665 4567999999998 678999999999999998764 44555555
Q ss_pred -CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCC-ceEEEEEeC--CCCEEEEEEcCCeEEEEEC
Q 003279 720 -HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN-KFHSCVFHP--TFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 720 -h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~-~I~svafsp--dg~~L~sgs~dg~I~Iwdl 794 (834)
|...|.+++|++++ +|++++ |+.|+|||+.++...........|.. .|.+++|+| ++.+|++++.|+.|+|||+
T Consensus 248 ~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 248 VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 89999999999776 566666 99999999976521112223356766 899999999 6889999999999999998
Q ss_pred CC
Q 003279 795 TE 796 (834)
Q Consensus 795 ~~ 796 (834)
.+
T Consensus 327 ~~ 328 (330)
T 2hes_X 327 EK 328 (330)
T ss_dssp --
T ss_pred cc
Confidence 65
No 61
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6.5e-35 Score=331.70 Aligned_cols=283 Identities=18% Similarity=0.245 Sum_probs=224.3
Q ss_pred EEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeE--EEEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEE
Q 003279 546 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 621 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~IWd~~t~~~--~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IW 621 (834)
....+|...|+||+|+| ++++||+|+.||.|+|||+.+++. ...+.+|.+.|++|+|+| ++.+|++|+.||+|+||
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 34567899999999999 567999999999999999987654 345568999999999998 68999999999999999
Q ss_pred ecCCCCceeeee--ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCC-EEEEEE
Q 003279 622 DTENPDYSLRTF--TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG-RILAAA 698 (834)
Q Consensus 622 Dl~s~~~~i~~~--~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~-~ll~~s 698 (834)
|+++... .... ..+...+.+++|+|++. +|++|+.||.|++||++.........+...|.+++|+|++. .|++++
T Consensus 193 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s 270 (435)
T 4e54_B 193 DFKGNIL-RVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATAS 270 (435)
T ss_dssp ETTSCEE-EEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEE
T ss_pred eccCCce-eEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEec
Confidence 9986432 2222 22345688999999976 77799999999999998544333333567899999999876 677888
Q ss_pred cCCeEEEEECCCCeEEE---EEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCC------ce
Q 003279 699 IENYISILDVETQVCRL---KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN------KF 768 (834)
Q Consensus 699 ~dg~I~iwDl~t~~~~~---~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~------~I 768 (834)
.|+.|++||+++.+... ...+|...|++++|+|+|.+|++++ |+.|+|||+.++ .+...+..|.. .+
T Consensus 271 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~ 347 (435)
T 4e54_B 271 VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW---DCPLGLIPHPHRHFQHLTP 347 (435)
T ss_dssp TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS---SSEEEECCCCCCCCSSSCC
T ss_pred CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC---ccceEEeccccccccccee
Confidence 99999999998765332 3356999999999999999999999 999999999987 34444333321 23
Q ss_pred EEEEEeCCCCEEEEEEc------------CCeEEEEECCCCeEE-Ee-ccCCCCeEEE-EEeCCCCEEEEEecCCcEEEe
Q 003279 769 HSCVFHPTFPSLLVIGC------------YETLELWNMTENKTL-TL-SAHDKLVSSL-AASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 769 ~svafspdg~~L~sgs~------------dg~I~Iwdl~~~~~~-~l-~~h~~~V~~l-afspdg~~LaSgs~DG~I~IW 833 (834)
..+.|+|++..++++.. ++.|++||..+++.+ .+ .+|...|.++ +|+|+|.+||+|+ |+.|+||
T Consensus 348 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW 426 (435)
T 4e54_B 348 IKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIW 426 (435)
T ss_dssp CBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEEC
T ss_pred EEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEE
Confidence 44567777776666642 247999999999887 33 4788888887 6999999999876 7899999
Q ss_pred C
Q 003279 834 K 834 (834)
Q Consensus 834 d 834 (834)
|
T Consensus 427 ~ 427 (435)
T 4e54_B 427 S 427 (435)
T ss_dssp C
T ss_pred E
Confidence 7
No 62
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=8.6e-34 Score=310.05 Aligned_cols=288 Identities=17% Similarity=0.264 Sum_probs=243.5
Q ss_pred eeeEEEEecCCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEeCCC-CeEE-EEeccCCCCeEEEEECCCCCEEEEEeCC
Q 003279 541 TFTEFQLIPASTSKVESCHFSPD---GKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSAD 615 (834)
Q Consensus 541 ~~~~~~~l~gH~~~V~sl~fSpd---g~~Lasgs~Dg~I~IWd~~t-~~~~-~~l~~h~~~I~~l~fspdg~~Latgs~D 615 (834)
.+..+..+.+|.+.|++++|+|+ |++|++|+.||.|+|||+.+ +..+ ..+.+|...|++++|+|++++|++++.|
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence 34457788999999999999999 69999999999999999997 5554 7888999999999999999999999999
Q ss_pred CeEEEEecCCCCceeeeeccCCCCeEEEEE--ccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCE
Q 003279 616 RTVRVWDTENPDYSLRTFTGHSTTVMSLDF--HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 693 (834)
Q Consensus 616 g~I~IWDl~s~~~~i~~~~~h~~~V~sl~f--spdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ 693 (834)
|.|++||+.++. ...+..|...|.+++| ++++. +|++++.||.|++||+++++.+..+..+..+.++.+.+ ..
T Consensus 108 g~v~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~ 182 (368)
T 3mmy_A 108 KTAKMWDLSSNQ--AIQIAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY--PM 182 (368)
T ss_dssp SEEEEEETTTTE--EEEEEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET--TE
T ss_pred CcEEEEEcCCCC--ceeeccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC--Ce
Confidence 999999999765 3446679999999999 77754 67799999999999999999999999888777777775 58
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEe--CCCCCEEEEEEcCCCCE----EEEEe-CCeEEEEEcCCCCCceeEEEeecCCC
Q 003279 694 ILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEY----LASVS-DELVRVWSIGSGSKGECIHELSCTGN 766 (834)
Q Consensus 694 ll~~s~dg~I~iwDl~t~~~~~~l~--~h~~~I~sl~~spdg~~----Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~ 766 (834)
+++++.++.+.+||++......... .+...+.++++.++... +++++ |+.|++||++.......+..+..|..
T Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 262 (368)
T 3mmy_A 183 AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRS 262 (368)
T ss_dssp EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEE
T ss_pred eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeec
Confidence 9999999999999999875443332 24456677777665543 77777 99999999998754345556666654
Q ss_pred ------------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 767 ------------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 767 ------------~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
.|.+++|+|++.+|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++++|++++.|+..+.|
T Consensus 263 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 263 NGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGH 342 (368)
T ss_dssp C----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred ccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccc
Confidence 7999999999999999999999999999999887 677899999999999999999999998865443
No 63
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.6e-34 Score=319.82 Aligned_cols=279 Identities=13% Similarity=0.092 Sum_probs=228.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCC-------cEEEEeCCCCeE----------EEEeccCCCCeEEEEECCCCCEEEEEe--
Q 003279 553 SKVESCHFSPDGKLLATGGHDK-------KAVLWCTESFTV----------KSTLEEHTQWITDVRFSPSLSRLATSS-- 613 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg-------~I~IWd~~t~~~----------~~~l~~h~~~I~~l~fspdg~~Latgs-- 613 (834)
-+|+|++|+||+++||+|+.|. .|+||++..... ...+..|...|.+++++ +..+++++
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence 4799999999999999997643 599999875421 23567888999999875 45666654
Q ss_pred ---------CCCeEEEEecCCCCceeee--------eccCCCCeEEEEEccCCCcEE-EEEeCCCcEEEEECCCCceeeE
Q 003279 614 ---------ADRTVRVWDTENPDYSLRT--------FTGHSTTVMSLDFHPSKEDLL-CSCDNNSEIRYWSINNGSCAGV 675 (834)
Q Consensus 614 ---------~Dg~I~IWDl~s~~~~i~~--------~~~h~~~V~sl~fspdg~~ll-asgs~Dg~I~lwDl~s~~~i~~ 675 (834)
.|+.|++|++......+.. ...+...+.+++|+|||..++ ++++.|++|++||+++++++..
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~ 172 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE 172 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence 4788999998765543322 123456789999999998764 4556799999999999999999
Q ss_pred eecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe-CC----eEEEEE
Q 003279 676 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-DE----LVRVWS 748 (834)
Q Consensus 676 ~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~--l~~h~~~I~sl~~spdg~~Lasgs-Dg----~I~IwD 748 (834)
+.+...|.+++|+|++.++++++ ++.+.+|+..++..+.. ...|...|.+++|+|++.++++++ |+ .+++|+
T Consensus 173 ~~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~ 251 (365)
T 4h5i_A 173 IETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKIS 251 (365)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEE
T ss_pred eCCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecc
Confidence 99989999999999999888877 55677777777765543 345888999999999999999988 65 688899
Q ss_pred cCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-E-eccCCCCeEEEEEeCCCCEEEEEe
Q 003279 749 IGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-T-LSAHDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 749 l~s~~~-~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~-l~~h~~~V~~lafspdg~~LaSgs 825 (834)
+..... ......+..|...|++++|+|+|++|++++.|+.|+|||+.+++++ . +.+|...|++|+|+|||++||+|+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S 331 (365)
T 4h5i_A 252 IKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVS 331 (365)
T ss_dssp EETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEE
T ss_pred cccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEe
Confidence 876532 1234567788899999999999999999999999999999999987 3 368999999999999999999999
Q ss_pred cCCcEEEeC
Q 003279 826 HDKCVKIWK 834 (834)
Q Consensus 826 ~DG~I~IWd 834 (834)
.|++|+|||
T Consensus 332 ~D~tvrvw~ 340 (365)
T 4h5i_A 332 AANTIHIIK 340 (365)
T ss_dssp TTSEEEEEE
T ss_pred CCCeEEEEE
Confidence 999999996
No 64
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.6e-34 Score=311.42 Aligned_cols=277 Identities=14% Similarity=0.143 Sum_probs=242.3
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe---EEEEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEE
Q 003279 545 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRV 620 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~---~~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~I 620 (834)
+....+|.+.|++++|+|++++|++++.|+.|+|||+.+++ ....+..|...|.+++|+|++. +|++++.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 45567899999999999999999999999999999998876 3455568999999999999999 9999999999999
Q ss_pred Eec-CCCCceeeeecc--CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC---------CceeeEeecCCCeeEEEEe
Q 003279 621 WDT-ENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---------GSCAGVFKCQSGATQMRFQ 688 (834)
Q Consensus 621 WDl-~s~~~~i~~~~~--h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s---------~~~i~~~~~~~~i~~l~~s 688 (834)
||+ .++. ...+.+ |...|.+++|+| +. ++++++.|+.|++||+++ ++++..+.+...+.+++|+
T Consensus 84 wd~~~~~~--~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (342)
T 1yfq_A 84 VDLIGSPS--FQALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN 159 (342)
T ss_dssp ECSSSSSS--EEECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred EEeccCCc--eEeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEec
Confidence 999 7654 477778 999999999999 44 777999999999999998 7777777788889999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCC-Ce--EEEEEeCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCC---CceeEEE
Q 003279 689 PRLGRILAAAIENYISILDVET-QV--CRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGS---KGECIHE 760 (834)
Q Consensus 689 p~g~~ll~~s~dg~I~iwDl~t-~~--~~~~l~~h~~~I~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s~~---~~~~i~~ 760 (834)
+++ +++++.++.|++||+++ +. .......|...|.+++|+| ++.+|++++ |+.|++|+++... ....+..
T Consensus 160 ~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 237 (342)
T 1yfq_A 160 SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp SSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred CCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee
Confidence 886 99999999999999998 43 3445556888999999999 999999999 9999999998751 0134555
Q ss_pred eecCCC---------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccC-CCCeEEEEEeCCCCEEEEEecCCc
Q 003279 761 LSCTGN---------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASASHDKC 829 (834)
Q Consensus 761 ~~~~~~---------~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h-~~~V~~lafspdg~~LaSgs~DG~ 829 (834)
+..|.. .|.+++|+|++.+|++++.|+.|++||+.+++.+ .+..| ...|.+++ |++++|++|+.||.
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred eecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 666644 9999999999999999999999999999999877 66677 99999999 99999999999998
No 65
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.5e-33 Score=303.67 Aligned_cols=251 Identities=19% Similarity=0.292 Sum_probs=213.1
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC--CeEEEEeccCCCCeEEEEECCC--CCEEEEEeCCCeEEE
Q 003279 545 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRV 620 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t--~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~I 620 (834)
+..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+ .+.+.++.+|.+.|++++|+++ +.+|++|+.|++|+|
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 346789999999999999999999999999999999974 4677899999999999999864 899999999999999
Q ss_pred EecCCCC-ceeeeeccCCCCeEEEEEccCC-CcEEEEEeCCCcEEEEECCCCce--eeEe-ecCCCeeEEEEecC-----
Q 003279 621 WDTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSC--AGVF-KCQSGATQMRFQPR----- 690 (834)
Q Consensus 621 WDl~s~~-~~i~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~lwDl~s~~~--i~~~-~~~~~i~~l~~sp~----- 690 (834)
||+.++. ..+..+.+|...|.+++|+|+. ..+|++++.|+.|++||++++.. ...+ .+...+.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9998764 2356677899999999999972 34788999999999999987632 2223 35667999999997
Q ss_pred --------CCEEEEEEcCCeEEEEECCCCe----EEEEEeCCCCCEEEEEEcCCC---CEEEEEe-CCeEEEEEcCCCCC
Q 003279 691 --------LGRILAAAIENYISILDVETQV----CRLKLQGHKNQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSK 754 (834)
Q Consensus 691 --------g~~ll~~s~dg~I~iwDl~t~~----~~~~l~~h~~~I~sl~~spdg---~~Lasgs-Dg~I~IwDl~s~~~ 754 (834)
+.+|++++.|+.|++||++++. ....+.+|...|.+++|+|++ .+|++++ |++|+|||+++...
T Consensus 162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~ 241 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG 241 (297)
T ss_dssp --------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC
Confidence 4689999999999999998764 667888999999999999985 7899998 99999999987532
Q ss_pred ceeEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003279 755 GECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 755 ~~~i~~~--~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
......+ ..+...|.+++|+|++++|++++.|+.|+||+..
T Consensus 242 ~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 1122233 4567889999999999999999999999999976
No 66
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=6.1e-34 Score=321.81 Aligned_cols=278 Identities=18% Similarity=0.332 Sum_probs=231.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-----------EEEEeccCC------------CCeEEEEECCCC
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------VKSTLEEHT------------QWITDVRFSPSL 606 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~-----------~~~~l~~h~------------~~I~~l~fspdg 606 (834)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 367899999999999999999999999999999876 578888998 889999999998
Q ss_pred --CEEEEEeCCCeEEEEecCCCCce--------------------------------------e-eeeccCCCCeEEEEE
Q 003279 607 --SRLATSSADRTVRVWDTENPDYS--------------------------------------L-RTFTGHSTTVMSLDF 645 (834)
Q Consensus 607 --~~Latgs~Dg~I~IWDl~s~~~~--------------------------------------i-~~~~~h~~~V~sl~f 645 (834)
.+|++++.|++|++||+.+.... . ....+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999998753221 1 123679999999999
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCC-CceeeEe--------ecCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeE--
Q 003279 646 HPSKEDLLCSCDNNSEIRYWSINN-GSCAGVF--------KCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVC-- 713 (834)
Q Consensus 646 spdg~~llasgs~Dg~I~lwDl~s-~~~i~~~--------~~~~~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t~~~-- 713 (834)
+|++. +|++| .|+.|++||+++ +..+..+ .+...|.+++|+|++ ..|++++.|+.|++||++++..
T Consensus 186 ~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 186 NSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp CTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred cCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 99977 56577 799999999994 4454433 345679999999998 8999999999999999999876
Q ss_pred --EEEEeCCCC------------CEEEEEEcCCCCEEEEEeCCeEEEEEcCC-CCCceeEEEeecCCCc-----------
Q 003279 714 --RLKLQGHKN------------QVHSVCWNTSGEYLASVSDELVRVWSIGS-GSKGECIHELSCTGNK----------- 767 (834)
Q Consensus 714 --~~~l~~h~~------------~I~sl~~spdg~~LasgsDg~I~IwDl~s-~~~~~~i~~~~~~~~~----------- 767 (834)
+..+..|.. .|.+++|+|++.+|++++++.|+|||+++ + .++..+..|...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~---~~~~~~~~~~~~~~~l~~~~~~~ 340 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMEN---RPVETYQVHEYLRSKLCSLYEND 340 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCS---SCSCCEESCGGGTTTHHHHHHTS
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCc---cccceeecccccccccccccccc
Confidence 678888876 89999999999999999899999999987 4 455555555421
Q ss_pred ----eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccC---------------------------------CCCeE
Q 003279 768 ----FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH---------------------------------DKLVS 810 (834)
Q Consensus 768 ----I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h---------------------------------~~~V~ 810 (834)
+..++|+|++.+|++++.|+.|++||+.+++.+.+..| ...|.
T Consensus 341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 420 (447)
T 3dw8_B 341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKIL 420 (447)
T ss_dssp GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCC
T ss_pred ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCcee
Confidence 33489999999999999999999999999988765433 45688
Q ss_pred EEEEeCCCCEEEEEecCCcEEEe
Q 003279 811 SLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 811 ~lafspdg~~LaSgs~DG~I~IW 833 (834)
+++|+|++.+||+++.++ ++||
T Consensus 421 ~~~~~p~~~~la~~~~~~-~~~~ 442 (447)
T 3dw8_B 421 HTAWHPKENIIAVATTNN-LYIF 442 (447)
T ss_dssp EEEECSSSSEEEEECSSC-EEEE
T ss_pred EEEECCCCCEEEEEecce-eeee
Confidence 999999999999998887 6666
No 67
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=6.8e-34 Score=306.85 Aligned_cols=285 Identities=18% Similarity=0.217 Sum_probs=219.3
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----eEEEEeccCCCCeEEEEECC--CCCEEEEEeCCCeEE
Q 003279 546 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVR 619 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~----~~~~~l~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~ 619 (834)
..+.+|.+.|++++|+|++++||+|+.||.|+|||+.++ +....+.+|...|++++|+| ++.+|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 456799999999999999999999999999999999876 56778889999999999999 699999999999999
Q ss_pred EEecCCCC--------ceeeeeccCCCCeEEEEEccC--CCcEEEEEeCCCcEEEEECCCCceeeEee------------
Q 003279 620 VWDTENPD--------YSLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK------------ 677 (834)
Q Consensus 620 IWDl~s~~--------~~i~~~~~h~~~V~sl~fspd--g~~llasgs~Dg~I~lwDl~s~~~i~~~~------------ 677 (834)
+||+.++. ..+..+..|...|.+++|+|+ +. ++++++.||.|++||+++++.+..+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99998754 346778889999999999998 55 67789999999999999887654432
Q ss_pred --cCCCeeEEEEecC---CCEEEEEEcCCeEEEEECCCCeE--EEEEeCCCCCEEEEEEcCCC----CEEEEEe-CCeEE
Q 003279 678 --CQSGATQMRFQPR---LGRILAAAIENYISILDVETQVC--RLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVR 745 (834)
Q Consensus 678 --~~~~i~~l~~sp~---g~~ll~~s~dg~I~iwDl~t~~~--~~~l~~h~~~I~sl~~spdg----~~Lasgs-Dg~I~ 745 (834)
+...+.+++|+|+ +..+++++.++.+.+|+...+.. +..+.+|...|++++|+|++ .+|++++ |+.|+
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence 3456899999997 89999999999998888887754 77788899999999999998 7899988 99999
Q ss_pred EEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc----CCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCE
Q 003279 746 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC----YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGM 820 (834)
Q Consensus 746 IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~----dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~ 820 (834)
+||++.+. ...........+....+.+....+..+.. ...+.+|+....+.+ .+.+|...|++++|+|++++
T Consensus 244 iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 320 (351)
T 3f3f_A 244 IFKITEKL---SPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI 320 (351)
T ss_dssp EEEEEECC------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCC
T ss_pred EEeCCCCc---CccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCE
Confidence 99998763 22222222333333344444433333332 335556655555555 67789999999999999999
Q ss_pred EEEEecCCcEEEeC
Q 003279 821 VASASHDKCVKIWK 834 (834)
Q Consensus 821 LaSgs~DG~I~IWd 834 (834)
|++|+.||.|+|||
T Consensus 321 l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 321 LSSAGDDGKVRLWK 334 (351)
T ss_dssp EEEEETTSCEEEEE
T ss_pred EEEecCCCcEEEEe
Confidence 99999999999996
No 68
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.1e-33 Score=312.98 Aligned_cols=278 Identities=19% Similarity=0.350 Sum_probs=240.7
Q ss_pred EecCCCCCeE--EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc-CCCCeEEEEECCCCCEEEEEeCCCeEEEEec
Q 003279 547 LIPASTSKVE--SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDT 623 (834)
Q Consensus 547 ~l~gH~~~V~--sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 623 (834)
...+|...+. +++|+ +..+++++.|+.|+|||+.+++....+.. |...|++++|+|++.+|++|+.||.|++||+
T Consensus 86 ~~~~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp ECTTCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eCCCCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 3456766654 45555 45688888999999999999998877765 8899999999999999999999999999999
Q ss_pred CCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC-CCceeeEee-cCCCeeEEEEecCCCEEEEEEcCC
Q 003279 624 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFK-CQSGATQMRFQPRLGRILAAAIEN 701 (834)
Q Consensus 624 ~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~-s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg 701 (834)
.++. .+..+.+|...|.+++|++ .++++++.||.|++||++ ....+..+. +...|.+++|+|++.+|++++.|+
T Consensus 164 ~~~~-~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 239 (401)
T 4aez_A 164 ESQT-KLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDN 239 (401)
T ss_dssp TTCC-EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cCCe-EEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 9866 4778889999999999953 488899999999999998 455555554 567899999999999999999999
Q ss_pred eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCC-CEEEEEe---CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003279 702 YISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 777 (834)
Q Consensus 702 ~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg-~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg 777 (834)
.|++||++++..+..+..|...|.+++|+|++ .++++++ |+.|++||+.++ .++..+. +...|.+++|+|++
T Consensus 240 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~---~~~~~~~-~~~~v~~~~~s~~~ 315 (401)
T 4aez_A 240 VVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG---ARVNTVD-AGSQVTSLIWSPHS 315 (401)
T ss_dssp CEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC---CEEEEEE-CSSCEEEEEECSSS
T ss_pred eEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC---CEEEEEe-CCCcEEEEEECCCC
Confidence 99999999999999999999999999999976 5666654 899999999987 5566654 56789999999999
Q ss_pred CEEEEEE--cCCeEEEEECCCCeEE---EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 778 PSLLVIG--CYETLELWNMTENKTL---TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 778 ~~L~sgs--~dg~I~Iwdl~~~~~~---~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.+|++++ .|+.|++||+.+++.. .+.+|...|.+++|+|++.+|++++.||.|+|||
T Consensus 316 ~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~ 377 (401)
T 4aez_A 316 KEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR 377 (401)
T ss_dssp SEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred CeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 9999965 7999999999987655 4668999999999999999999999999999996
No 69
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.3e-33 Score=309.43 Aligned_cols=289 Identities=19% Similarity=0.360 Sum_probs=237.9
Q ss_pred EEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEe-------------ccCCCCeEEEEECC-CCCE
Q 003279 544 EFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTL-------------EEHTQWITDVRFSP-SLSR 608 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~IWd~~t~~~~~~l-------------~~h~~~I~~l~fsp-dg~~ 608 (834)
....+.+|.+.|++++|+| ++++||+|+.||.|+|||+.++.....+ .+|...|.+++|+| ++.+
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 3567789999999999999 9999999999999999999987654333 25999999999999 7889
Q ss_pred EEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCC--cEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEE
Q 003279 609 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQM 685 (834)
Q Consensus 609 Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~--~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l 685 (834)
|++++.|+.|++||+.++.. ...+. +...+.++.|++.+. .++++++.|+.|++||+++++.+..+. +...+.++
T Consensus 115 l~s~~~d~~i~iwd~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~ 192 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNTLQT-ADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAV 192 (408)
T ss_dssp EEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEE
T ss_pred EEEEeCCCeEEEeeCCCCcc-ceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEE
Confidence 99999999999999997653 44443 778899999998643 378899999999999999998888877 46779999
Q ss_pred EEecCCC-EEEEEEcCCeEEEEECCCCe-EEEEE---------------eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEE
Q 003279 686 RFQPRLG-RILAAAIENYISILDVETQV-CRLKL---------------QGHKNQVHSVCWNTSGEYLASVS-DELVRVW 747 (834)
Q Consensus 686 ~~sp~g~-~ll~~s~dg~I~iwDl~t~~-~~~~l---------------~~h~~~I~sl~~spdg~~Lasgs-Dg~I~Iw 747 (834)
+|+|++. .+++++.|+.|++||++++. ++..+ ..|...|.+++|+|++.+|++++ |+.|++|
T Consensus 193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 272 (408)
T 4a11_B 193 SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272 (408)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence 9999988 48899999999999998764 44444 46888999999999999999998 9999999
Q ss_pred EcCCCCCceeEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEE
Q 003279 748 SIGSGSKGECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 824 (834)
Q Consensus 748 Dl~s~~~~~~i~~~--~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSg 824 (834)
|+.++......... ......+........+..+++++.++.|++||+.+++.+ .+.+|...|++++|+|++++|+++
T Consensus 273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 352 (408)
T 4a11_B 273 NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSG 352 (408)
T ss_dssp ETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred ECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEE
Confidence 99987432211110 111122222233344566888889999999999999887 677899999999999999999999
Q ss_pred ecCCcEEEeC
Q 003279 825 SHDKCVKIWK 834 (834)
Q Consensus 825 s~DG~I~IWd 834 (834)
+.||.|+|||
T Consensus 353 ~~dg~i~iw~ 362 (408)
T 4a11_B 353 SRDCNILAWV 362 (408)
T ss_dssp ETTSCEEEEE
T ss_pred CCCCeEEEEe
Confidence 9999999996
No 70
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.9e-34 Score=321.05 Aligned_cols=274 Identities=16% Similarity=0.206 Sum_probs=235.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeee
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 633 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~ 633 (834)
.+++++|+|++++|++|+.|+.|++||+.+++....+..| ..+....|++++++|++++.|+.|++||+.++. ....+
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~ 135 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-QREID 135 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-EEEET
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-eeeec
Confidence 3458999999999999999999999999988777666666 455666889999999999999999999998754 46667
Q ss_pred ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003279 634 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQV 712 (834)
Q Consensus 634 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~ 712 (834)
.+|...|.+++|+|++. +|++++.|+.|++||+++++.+..+. +...|.+++|+|++..|++++.|+.|++||+++++
T Consensus 136 ~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT 214 (420)
T ss_dssp TSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred ccccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence 89999999999999976 77799999999999999999888887 46779999999999999999999999999999999
Q ss_pred EEEEEeC---CCCCEEEEE---------------------EcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe-ecCCC
Q 003279 713 CRLKLQG---HKNQVHSVC---------------------WNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGN 766 (834)
Q Consensus 713 ~~~~l~~---h~~~I~sl~---------------------~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~-~~~~~ 766 (834)
.+..+.. |...|.+++ |+|++.+|++++ |+.|++||++++ ..+..+ ..|..
T Consensus 215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~ 291 (420)
T 3vl1_A 215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK---EQTIQLPSKFTC 291 (420)
T ss_dssp EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC---CEEEEECCTTSS
T ss_pred eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC---ceeEEcccccCC
Confidence 9988875 444555554 578899999999 999999999987 444444 45788
Q ss_pred ceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCeE--EEecc-CCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 767 KFHSCVFHPTFP-SLLVIGCYETLELWNMTENKT--LTLSA-HDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 767 ~I~svafspdg~-~L~sgs~dg~I~Iwdl~~~~~--~~l~~-h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.|.+++|+|++. +|++++.|+.|++||+.+++. ..+.. |...|.++.| +++++|++++.||.|+|||
T Consensus 292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEE
T ss_pred CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEe
Confidence 999999999999 999999999999999998753 24554 7778888865 5788999999999999996
No 71
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.3e-32 Score=331.72 Aligned_cols=275 Identities=16% Similarity=0.270 Sum_probs=234.9
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
..++++|+.|+.|++|........ .......+.+|...|.+++|+|++++|++|+.|++|+|||+.
T Consensus 395 ~~~l~s~s~D~~i~~W~~~~~~~~--------------~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~ 460 (694)
T 3dm0_A 395 ADIIVSASRDKSIILWKLTKDDKA--------------YGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLA 460 (694)
T ss_dssp CSEEEEEETTSEEEEEECCCSTTC--------------SCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCEEEEEeCCCcEEEEEccCCCcc--------------cccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 368999999999999976543211 112346788999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeee---eccCCCCeEEEEEccCCC-cEEEEEeC
Q 003279 583 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDFHPSKE-DLLCSCDN 658 (834)
Q Consensus 583 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~---~~~h~~~V~sl~fspdg~-~llasgs~ 658 (834)
+++.+..+.+|...|.+++|+|++++|++|+.|++|+|||+..... ... ..+|...|.+++|+|++. .++++++.
T Consensus 461 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 539 (694)
T 3dm0_A 461 AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK-YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW 539 (694)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-EEECSSTTSCSSCEEEEEECSCSSSCEEEEEET
T ss_pred CCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc-eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeC
Confidence 9999999999999999999999999999999999999999865322 221 246889999999999863 57889999
Q ss_pred CCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEE
Q 003279 659 NSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 737 (834)
Q Consensus 659 Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~La 737 (834)
|+.|++||++++++...+. |...|.+++|+|++.+|++++.|+.|++||+++++++..+. +...|.+++|+|++.+|+
T Consensus 540 d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~ 618 (694)
T 3dm0_A 540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLC 618 (694)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEE
T ss_pred CCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEE
Confidence 9999999999999888776 45679999999999999999999999999999999888876 456899999999999999
Q ss_pred EEeCCeEEEEEcCCCCCceeEEEeecC-------------------CCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 738 SVSDELVRVWSIGSGSKGECIHELSCT-------------------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 738 sgsDg~I~IwDl~s~~~~~~i~~~~~~-------------------~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
++.++.|+|||++++ ..+..+..+ ...+.+++|+|++.+|++++.||.|+|||+..
T Consensus 619 ~~~~~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 619 AATEHGIKIWDLESK---SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp EEETTEEEEEETTTT---EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEcCCCEEEEECCCC---CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 988999999999987 444444321 12378899999999999999999999999853
No 72
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.3e-33 Score=340.97 Aligned_cols=286 Identities=17% Similarity=0.305 Sum_probs=255.5
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
...+.+.+|.+.|++++|+|++++||+|+.||.|+|||+.+++.+..+.+|...|++++|+|++++|++++.||.|++||
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC-ceeeEee-cCCCeeEEEEec-CCCEEEEEEc
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFK-CQSGATQMRFQP-RLGRILAAAI 699 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~-~~i~~~~-~~~~i~~l~~sp-~g~~ll~~s~ 699 (834)
+.++.. +..+.+|...|.+++|+|++. +|++++.||.|++||+.++ .....+. +...+.+++|+| ++..+++++.
T Consensus 84 ~~~~~~-~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 84 YNTGEK-VVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp TTTCCE-EEEEECCSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred CCCCcE-EEEEecCCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 998764 778889999999999999987 5668999999999999987 5555555 456799999999 7889999999
Q ss_pred CCeEEEEECCCCeEEEEEeCCC-CCEEEEEEcC--CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003279 700 ENYISILDVETQVCRLKLQGHK-NQVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 775 (834)
Q Consensus 700 dg~I~iwDl~t~~~~~~l~~h~-~~I~sl~~sp--dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafsp 775 (834)
|+.|++||+.++.....+..+. ..+.+++|+| ++.+|++++ |+.|++||+.++ ..+..+..|...|.+++|+|
T Consensus 162 dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~ 238 (814)
T 3mkq_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHP 238 (814)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT---EEEEEEECCSSCEEEEEECS
T ss_pred CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcC
Confidence 9999999999887777776554 8899999999 999999999 999999999887 77888888999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCC--EEEEEecCCcEEEeC
Q 003279 776 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG--MVASASHDKCVKIWK 834 (834)
Q Consensus 776 dg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~--~LaSgs~DG~I~IWd 834 (834)
++.+|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++. ++++++ |+.+.+|+
T Consensus 239 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~ 299 (814)
T 3mkq_A 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLS 299 (814)
T ss_dssp SSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEE
Confidence 9999999999999999999998877 6778889999999999987 455555 55566663
No 73
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.1e-32 Score=309.33 Aligned_cols=270 Identities=22% Similarity=0.404 Sum_probs=233.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe--ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeee
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l--~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~ 632 (834)
++.|+||+++ +||+|. |++|+|||..+++.+..+ .+|...|++|+|+|++++|++|+.||+|+|||+.+++ .+..
T Consensus 108 ~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~-~~~~ 184 (420)
T 4gga_A 108 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-RLRN 184 (420)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEE
T ss_pred ceeEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-EEEE
Confidence 6779999764 888776 899999999999888765 4678899999999999999999999999999999865 4788
Q ss_pred eccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc-eeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003279 633 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET 710 (834)
Q Consensus 633 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~-~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t 710 (834)
+.+|...|.++++++ .++++|+.|+.+++||..... .+..+. +...+..+.+++++.++++++.|+.|++||..+
T Consensus 185 ~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~ 261 (420)
T 4gga_A 185 MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261 (420)
T ss_dssp ECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence 899999999999873 488899999999999998644 344444 466799999999999999999999999999987
Q ss_pred Ce----EEEEEeCCCCCEEEEEEcCCCC-EEEEE--e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003279 711 QV----CRLKLQGHKNQVHSVCWNTSGE-YLASV--S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 782 (834)
Q Consensus 711 ~~----~~~~l~~h~~~I~sl~~spdg~-~Lasg--s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~s 782 (834)
++ .+.....|...|.+++|+|++. +++++ + |++|++||+.++ .++..+.. ...+.++.|++++..+++
T Consensus 262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~---~~~~~~~~-~~~v~~~~~~~~~~~lv~ 337 (420)
T 4gga_A 262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDA-HSQVCSILWSPHYKELIS 337 (420)
T ss_dssp CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT---EEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc---ccceeecc-ccceeeeeecCCCCeEEE
Confidence 64 3556777999999999999654 55543 3 899999999988 66666654 457889999999999988
Q ss_pred EE--cCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 783 IG--CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 783 gs--~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++ .|+.|+|||+.+++.+ .+.+|.+.|++++|+|||.+||||+.||+|+|||
T Consensus 338 ~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 338 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392 (420)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 76 5889999999999887 7889999999999999999999999999999997
No 74
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.9e-33 Score=353.10 Aligned_cols=285 Identities=21% Similarity=0.355 Sum_probs=260.1
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC
Q 003279 546 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 625 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s 625 (834)
..+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|+|||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceeeeeccCCCCeEEEEEccCC-CcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeE
Q 003279 626 PDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYI 703 (834)
Q Consensus 626 ~~~~i~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I 703 (834)
+. .+..+.+|...|.+++|+|++ ..++++++.|+.|++||+++++++..+. +...|.+++|+|++..+++++.||.|
T Consensus 689 ~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v 767 (1249)
T 3sfz_A 689 GK-LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767 (1249)
T ss_dssp CC-EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred Cc-eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeE
Confidence 76 478888999999999999963 4578899999999999999999888776 46679999999999999999999999
Q ss_pred EEEECCCCeEEEEEeC-------------CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEee-cCCCceE
Q 003279 704 SILDVETQVCRLKLQG-------------HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-CTGNKFH 769 (834)
Q Consensus 704 ~iwDl~t~~~~~~l~~-------------h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~-~~~~~I~ 769 (834)
++||++++.....+.. +...+.+++|+|+|.++++++++.|.+||+.++ ..+..+. .|...|.
T Consensus 768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~v~ 844 (1249)
T 3sfz_A 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS---GLLAEIHTGHHSTIQ 844 (1249)
T ss_dssp EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC---CEEEEEECSSSSCCC
T ss_pred EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC---CceeEEcCCCCCceE
Confidence 9999999887766642 233688999999999999999999999999987 4444443 7889999
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 770 SCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 770 svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+++|+|++.++++++.++.|++||+.++..+ .+.+|...|.+++|+|++.+|++++.||.|++||
T Consensus 845 ~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 845 YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910 (1249)
T ss_dssp EEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 9999999999999999999999999999877 6779999999999999999999999999999996
No 75
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4.6e-32 Score=291.29 Aligned_cols=270 Identities=21% Similarity=0.391 Sum_probs=229.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe--ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeee
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l--~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~ 632 (834)
+.+|+||+++ +||+|. |++|+|||+++++.+..+ .+|...|++++|+|++++|++|+.||+|++||+.+++ .+..
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~-~~~~ 104 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-RLRN 104 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-eEEE
Confidence 5789999986 777765 899999999999988766 4688899999999999999999999999999999865 4788
Q ss_pred eccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce-eeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003279 633 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET 710 (834)
Q Consensus 633 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~-i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t 710 (834)
+.+|...+.++.+.+ .++++++.++.+++|+...... +..+. +...+..+.+.+++.++++++.|+.|++||+++
T Consensus 105 ~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 181 (318)
T 4ggc_A 105 MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 181 (318)
T ss_dssp EECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred ecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence 899999998887763 4788999999999999987643 33333 467799999999999999999999999999987
Q ss_pred Ce----EEEEEeCCCCCEEEEEEcCCCCEE-E--EEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003279 711 QV----CRLKLQGHKNQVHSVCWNTSGEYL-A--SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 782 (834)
Q Consensus 711 ~~----~~~~l~~h~~~I~sl~~spdg~~L-a--sgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~s 782 (834)
++ .......+...|.++++++++..+ . +++ ++.|++||.... ... ....+...+..+.|++++..+++
T Consensus 182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~---~~~-~~~~~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACL-SAVDAHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC---CEE-EEEECSSCEEEEEEETTTTEEEE
T ss_pred CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc---ccc-ccccceeeeeeeeecccccceEE
Confidence 64 345556688899999999976533 3 333 789999999876 333 33446778999999999999887
Q ss_pred EE--cCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 783 IG--CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 783 gs--~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++ .|+.|+|||+.+++.+ .+.+|.+.|++++|+|++++||||+.||+|+|||
T Consensus 258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 76 6889999999999887 7789999999999999999999999999999997
No 76
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-31 Score=292.81 Aligned_cols=270 Identities=14% Similarity=0.167 Sum_probs=240.5
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
.++++|+.|+.|++|..... ..+..+.+|.+.|.+++|+|++++|++++.||.|++||+.+
T Consensus 45 ~~l~~~~~dg~i~vwd~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 105 (369)
T 3zwl_B 45 DLLFSCSKDSSASVWYSLNG-------------------ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSN 105 (369)
T ss_dssp CEEEEEESSSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred CEEEEEeCCCEEEEEeCCCc-------------------hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 68999999999999965432 24567789999999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEecCCCCc----------eeeeeccCCC--CeEEEEEc
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDY----------SLRTFTGHST--TVMSLDFH 646 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D-----g~I~IWDl~s~~~----------~i~~~~~h~~--~V~sl~fs 646 (834)
++.+..+. |...|.+++|+|++.+|++++.+ +.|++||+..... ....+..|.. .|.+++|+
T Consensus 106 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (369)
T 3zwl_B 106 GQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWS 184 (369)
T ss_dssp CCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEEC
T ss_pred CcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEc
Confidence 99998887 88999999999999999999999 9999999986542 2344555665 89999999
Q ss_pred cCCCcEEEEEeCCCcEEEEECCC-CceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCE
Q 003279 647 PSKEDLLCSCDNNSEIRYWSINN-GSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV 724 (834)
Q Consensus 647 pdg~~llasgs~Dg~I~lwDl~s-~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I 724 (834)
|++. +|++++.||.|++||+++ ...+..+. +...+.+++|+|++.+|++++.|+.|++||+++++.+..+. +...+
T Consensus 185 ~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~ 262 (369)
T 3zwl_B 185 TKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPL 262 (369)
T ss_dssp GGGC-EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCE
T ss_pred CCCC-EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCc
Confidence 9977 666889999999999998 67777776 46779999999999999999999999999999999988887 78899
Q ss_pred EEEEEcCCCCEEEEEe-CC--------------eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003279 725 HSVCWNTSGEYLASVS-DE--------------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 789 (834)
Q Consensus 725 ~sl~~spdg~~Lasgs-Dg--------------~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I 789 (834)
.+++|+|++.++++++ ++ .|++||+.++ ..+..+..|...|.+++|+|++.+|++++.|+.|
T Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v 339 (369)
T 3zwl_B 263 NTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE---EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFI 339 (369)
T ss_dssp EEEEECSSSSEEEEEECCC-------------CEEEEEETTTC---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred eeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC---cchhheecccCcEEEEEECCCCCEEEEEcCCCeE
Confidence 9999999999999988 66 8999999988 7788888999999999999999999999999999
Q ss_pred EEEECCCCe
Q 003279 790 ELWNMTENK 798 (834)
Q Consensus 790 ~Iwdl~~~~ 798 (834)
++|++..+.
T Consensus 340 ~iw~~~~~~ 348 (369)
T 3zwl_B 340 RLHHFEKSY 348 (369)
T ss_dssp EEEEECHHH
T ss_pred EEEECcccc
Confidence 999998754
No 77
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=6.4e-33 Score=308.37 Aligned_cols=276 Identities=17% Similarity=0.145 Sum_probs=241.6
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCC----C---CEEEEEeCCCcE
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD----G---KLLATGGHDKKA 576 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpd----g---~~Lasgs~Dg~I 576 (834)
.++++|+.|+.|++|........ ..+..+..+.+|...|++++|+|+ + ++|++++.|+.|
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~~-------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i 93 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDNE-------------NPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDL 93 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTTC-------------CGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCE
T ss_pred CeEEEEcCCCEEEEEECCCcccc-------------cCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCE
Confidence 68899999999999976544211 112335667799999999999999 9 999999999999
Q ss_pred EEEeCCCCeE-----EEEeccC-----CCCeEEEEEC----CCCCE-EEEEeCCCeEEEEecCC------CCceee----
Q 003279 577 VLWCTESFTV-----KSTLEEH-----TQWITDVRFS----PSLSR-LATSSADRTVRVWDTEN------PDYSLR---- 631 (834)
Q Consensus 577 ~IWd~~t~~~-----~~~l~~h-----~~~I~~l~fs----pdg~~-Latgs~Dg~I~IWDl~s------~~~~i~---- 631 (834)
++||+.+++. +..+..| ...|.+++|+ |++.+ |++++.||.|++||+.+ ... +.
T Consensus 94 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~ 172 (397)
T 1sq9_A 94 LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT-LNWSPT 172 (397)
T ss_dssp EEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT-TCCCCE
T ss_pred EEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce-eeccCc
Confidence 9999998876 8888888 5899999999 99999 99999999999999987 443 33
Q ss_pred -ee-------ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-------CCCeeEEEEecCCCEEEE
Q 003279 632 -TF-------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRLGRILA 696 (834)
Q Consensus 632 -~~-------~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-------~~~i~~l~~sp~g~~ll~ 696 (834)
.+ ..|...|.+++|+|++ ++++++.|+.|++||+++++.+..+.. ...+.+++|+|++.+|++
T Consensus 173 ~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~ 250 (397)
T 1sq9_A 173 LELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI 250 (397)
T ss_dssp EEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEE
T ss_pred ceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEE
Confidence 44 4588999999999997 788999999999999999999988886 778999999999999999
Q ss_pred EEcC---CeEEEEECCCCeEEEEEeC-------------CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEE
Q 003279 697 AAIE---NYISILDVETQVCRLKLQG-------------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 759 (834)
Q Consensus 697 ~s~d---g~I~iwDl~t~~~~~~l~~-------------h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~ 759 (834)
++.| +.|++||+++++.+..+.. |...|.+++|+|++.+|++++ |+.|+|||+.++ +.+.
T Consensus 251 ~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~ 327 (397)
T 1sq9_A 251 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK---ERIT 327 (397)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEE
T ss_pred EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC---ceeE
Confidence 9999 9999999999999999998 999999999999999999999 999999999987 7777
Q ss_pred Eee------cC---------------CCceEEEEEeCCC----------CEEEEEEcCCeEEEEECCCCe
Q 003279 760 ELS------CT---------------GNKFHSCVFHPTF----------PSLLVIGCYETLELWNMTENK 798 (834)
Q Consensus 760 ~~~------~~---------------~~~I~svafspdg----------~~L~sgs~dg~I~Iwdl~~~~ 798 (834)
.+. .| ...|.+++|+|++ .+|++++.|+.|++||+.+++
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 328 TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 887 77 8999999999998 799999999999999998764
No 78
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=6.3e-33 Score=302.72 Aligned_cols=277 Identities=15% Similarity=0.271 Sum_probs=232.1
Q ss_pred ceEEeccC---CCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCC---CCEEEEEeCCCcEE
Q 003279 504 RFVDDGSL---DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD---GKLLATGGHDKKAV 577 (834)
Q Consensus 504 ~~l~~Gs~---D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpd---g~~Lasgs~Dg~I~ 577 (834)
.++++|+. |+.|++|...... .. .....+|...|.+++|+|+ +++|++|+.||.|+
T Consensus 32 ~l~~~~s~~~~d~~v~iw~~~~~~-----------------~~-~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 93 (357)
T 3i2n_A 32 KFVTMGNFARGTGVIQLYEIQHGD-----------------LK-LLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLH 93 (357)
T ss_dssp EEEEEEC--CCCEEEEEEEECSSS-----------------EE-EEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEE
T ss_pred eEEEecCccCCCcEEEEEeCCCCc-----------------cc-ceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEE
Confidence 57788887 8999999654321 01 1222378999999999998 69999999999999
Q ss_pred EEeCCCCe-EEEEeccCCCCeEEEEE------CCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCC----CeEEEE--
Q 003279 578 LWCTESFT-VKSTLEEHTQWITDVRF------SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST----TVMSLD-- 644 (834)
Q Consensus 578 IWd~~t~~-~~~~l~~h~~~I~~l~f------spdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~----~V~sl~-- 644 (834)
+||+.+++ .+..+.+|...|.+++| ++++.+|++++.|+.|++||+.++...+..+..|.. .|.+++
T Consensus 94 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (357)
T 3i2n_A 94 IWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFG 173 (357)
T ss_dssp EECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEE
T ss_pred EEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEE
Confidence 99999988 88899999999999954 688999999999999999999987655666665554 899998
Q ss_pred --EccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEec---CCCEEEEEEcCCeEEEEECCCCeEEEE---
Q 003279 645 --FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP---RLGRILAAAIENYISILDVETQVCRLK--- 716 (834)
Q Consensus 645 --fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp---~g~~ll~~s~dg~I~iwDl~t~~~~~~--- 716 (834)
|+|++. ++++++.|+.|++||+++++......+...+.+++|+| ++..+++++.|+.|++||+++++....
T Consensus 174 ~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 252 (357)
T 3i2n_A 174 NAYNQEER-VVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFAS 252 (357)
T ss_dssp CCCC-CCC-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEE
T ss_pred eccCCCCC-EEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceee
Confidence 677765 67789999999999999999888888889999999999 899999999999999999987654433
Q ss_pred --EeCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCc----------------eeEEEeecCCCceEEEEEeCC
Q 003279 717 --LQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKG----------------ECIHELSCTGNKFHSCVFHPT 776 (834)
Q Consensus 717 --l~~h~~~I~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~----------------~~i~~~~~~~~~I~svafspd 776 (834)
+.+|...|++++|+|++. +|++++ |+.|++||++..... ..+..+..|...|.+++|+|+
T Consensus 253 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 332 (357)
T 3i2n_A 253 VSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPD 332 (357)
T ss_dssp EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSS
T ss_pred eccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCC
Confidence 348999999999999998 788888 999999999875433 467788889999999999999
Q ss_pred CCEEE-EEEcCCeEEEEECCCCeE
Q 003279 777 FPSLL-VIGCYETLELWNMTENKT 799 (834)
Q Consensus 777 g~~L~-sgs~dg~I~Iwdl~~~~~ 799 (834)
+.+|+ +++.|+.|++||+.+.+.
T Consensus 333 ~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 333 KRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp STTEEEEEETTSEEEEEEECC---
T ss_pred CCeEEEEecCCCcEEEEECCCccc
Confidence 99998 799999999999987654
No 79
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.5e-32 Score=311.72 Aligned_cols=271 Identities=22% Similarity=0.402 Sum_probs=241.6
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC
Q 003279 545 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 624 (834)
+....+|...|+|+.| ++++|++|+.||.|++||+.+++.+..+.+|...|.+++| ++.+|++|+.||+|++||+.
T Consensus 126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 3445578888999887 7899999999999999999999999999999999999999 78899999999999999999
Q ss_pred CCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceee---Eee-cCCCeeEEEEecCCCEEEEEEcC
Q 003279 625 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG---VFK-CQSGATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 625 s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~---~~~-~~~~i~~l~~sp~g~~ll~~s~d 700 (834)
++. .+..+.+|...|.+++|+++ ++++|+.||.|++||+.++.... .+. +...+.++.| ++.++++++.|
T Consensus 202 ~~~-~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~d 275 (435)
T 1p22_A 202 TGE-MLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGD 275 (435)
T ss_dssp SCC-EEEEECCCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETT
T ss_pred CCc-EEEEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCC
Confidence 876 47888899999999999743 78899999999999999877652 232 4567888888 67899999999
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003279 701 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 779 (834)
Q Consensus 701 g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~ 779 (834)
+.|++||+++++.+..+.+|...|.+++|+ +.+|++++ |+.|++||++++ .++..+..|...|.+++| ++.+
T Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~--~~~~ 348 (435)
T 1p22_A 276 RTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRF--DNKR 348 (435)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEC--CSSE
T ss_pred CeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCC---CEEEEEeCCcCcEEEEEe--cCCE
Confidence 999999999999999999999999999994 67888888 999999999987 788889999999999999 7889
Q ss_pred EEEEEcCCeEEEEECCCCe---------EE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 780 LLVIGCYETLELWNMTENK---------TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 780 L~sgs~dg~I~Iwdl~~~~---------~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
|++++.|+.|++||+.++. .+ .+.+|.+.|.+++| ++.+|++|+.||.|+|||
T Consensus 349 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd 411 (435)
T 1p22_A 349 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 411 (435)
T ss_dssp EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence 9999999999999986654 33 77899999999999 688999999999999997
No 80
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-32 Score=342.00 Aligned_cols=326 Identities=12% Similarity=0.034 Sum_probs=243.1
Q ss_pred ccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEE
Q 003279 499 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAV 577 (834)
Q Consensus 499 ~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpd-g~~Lasgs~Dg~I~ 577 (834)
+.....++++|+.|+.|++|...........+...+. ....+.+|.+.|++++|+|+ +.+|++|+.|+.|
T Consensus 106 ~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~--------~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v- 176 (902)
T 2oaj_A 106 TDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK--------SSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL- 176 (902)
T ss_dssp CCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHH--------HHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCccccceeccccc--------cccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-
Confidence 3445578999999999999976533110000000000 00235789999999999996 5789999999999
Q ss_pred EEeCCCCeEEEEeccC------------------CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceee-ee---cc
Q 003279 578 LWCTESFTVKSTLEEH------------------TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR-TF---TG 635 (834)
Q Consensus 578 IWd~~t~~~~~~l~~h------------------~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~-~~---~~ 635 (834)
|||+.+++.+..+..| ...|++++|+|++.+|++++.|++|++||+.+++.... .+ ..
T Consensus 177 lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~ 256 (902)
T 2oaj_A 177 TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEI 256 (902)
T ss_dssp EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCT
T ss_pred EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeeccccc
Confidence 9999999999888766 57899999999999999999999999999988654221 12 11
Q ss_pred -------------CCCCeEEEEEcc----CCCcEEEEEeCC---------------------------------------
Q 003279 636 -------------HSTTVMSLDFHP----SKEDLLCSCDNN--------------------------------------- 659 (834)
Q Consensus 636 -------------h~~~V~sl~fsp----dg~~llasgs~D--------------------------------------- 659 (834)
|...|.+++|++ ++..++++|+.|
T Consensus 257 ~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 336 (902)
T 2oaj_A 257 NVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKI 336 (902)
T ss_dssp TSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEE
T ss_pred CCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEE
Confidence 345789999953 333556665433
Q ss_pred -------------------------------------CcEEEEECCCCceeeE-------e-ecCCCee-----------
Q 003279 660 -------------------------------------SEIRYWSINNGSCAGV-------F-KCQSGAT----------- 683 (834)
Q Consensus 660 -------------------------------------g~I~lwDl~s~~~i~~-------~-~~~~~i~----------- 683 (834)
+.|++||+.++..... + .++..|+
T Consensus 337 ~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~ 416 (902)
T 2oaj_A 337 FPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKL 416 (902)
T ss_dssp ECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHH
T ss_pred EecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHH
Confidence 3344444433321110 0 0012233
Q ss_pred -----------------------EEEEecCCCEEEEEEcCCeEEEEECCCCeE----EEE--Ee-----CCCCCEEEEEE
Q 003279 684 -----------------------QMRFQPRLGRILAAAIENYISILDVETQVC----RLK--LQ-----GHKNQVHSVCW 729 (834)
Q Consensus 684 -----------------------~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~----~~~--l~-----~h~~~I~sl~~ 729 (834)
.++|+|+++.|++++.|++|++||+.++.. ... +. +|...|.+++|
T Consensus 417 w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svaf 496 (902)
T 2oaj_A 417 WLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISF 496 (902)
T ss_dssp HHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEE
T ss_pred HHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEe
Confidence 344568889999999999999999987632 111 11 78899999999
Q ss_pred cCCCCEEEEEe-CCeEEEEEcCCCCC------------------------------------------ceeEEEeecCCC
Q 003279 730 NTSGEYLASVS-DELVRVWSIGSGSK------------------------------------------GECIHELSCTGN 766 (834)
Q Consensus 730 spdg~~Lasgs-Dg~I~IwDl~s~~~------------------------------------------~~~i~~~~~~~~ 766 (834)
+||+++||+++ |++|+|||+.++.. ..++..+..|..
T Consensus 497 spdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~ 576 (902)
T 2oaj_A 497 AAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKG 576 (902)
T ss_dssp ETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSC
T ss_pred cCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCC
Confidence 99999999999 99999999986521 134677888999
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE------ec-cCCCCeEEEEEe-----CCC---CEEEEEecCCcEE
Q 003279 767 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT------LS-AHDKLVSSLAAS-----TVN---GMVASASHDKCVK 831 (834)
Q Consensus 767 ~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~------l~-~h~~~V~~lafs-----pdg---~~LaSgs~DG~I~ 831 (834)
.|++++|+|+| +|++++.|++|+|||+.+..++. +. +|...|++|+|+ ||| .+|++|+.||+|+
T Consensus 577 ~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~ 655 (902)
T 2oaj_A 577 KTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVI 655 (902)
T ss_dssp SEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEE
T ss_pred cEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEE
Confidence 99999999999 99999999999999999887652 22 789999999999 886 7999999999999
Q ss_pred EeC
Q 003279 832 IWK 834 (834)
Q Consensus 832 IWd 834 (834)
+||
T Consensus 656 ~wd 658 (902)
T 2oaj_A 656 TYK 658 (902)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
No 81
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.1e-32 Score=299.33 Aligned_cols=277 Identities=17% Similarity=0.232 Sum_probs=235.2
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
.++++|+.|+.|++|..... .+..+..+.+|...|.+++|+|++++|++++.|+.|++||+++
T Consensus 21 ~~l~~~~~d~~v~i~~~~~~-----------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 21 TQIAICPNNHEVHIYEKSGN-----------------KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp SEEEEECSSSEEEEEEEETT-----------------EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred CEEEEEeCCCEEEEEeCCCC-----------------cEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 68899999999999954322 2345777889999999999999999999999999999999998
Q ss_pred CeEEEE--eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc---eeeeeccCCCCeEEEEEccCCCcEEEEEeC
Q 003279 584 FTVKST--LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 658 (834)
Q Consensus 584 ~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~---~i~~~~~h~~~V~sl~fspdg~~llasgs~ 658 (834)
++.... +..|...|.+++|+|++++|++++.|+.|++||+..... .......|...|.+++|+|++. +|++++.
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~ 162 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSC 162 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEET
T ss_pred CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEEcC
Confidence 875544 467999999999999999999999999999999987653 2344467899999999999876 6778999
Q ss_pred CCcEEEEECC------------------CCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 003279 659 NSEIRYWSIN------------------NGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 719 (834)
Q Consensus 659 Dg~I~lwDl~------------------s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~ 719 (834)
|+.|++||++ .++++..+. +...+.+++|+|++.+|++++.|+.|++||+++++++..+..
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 242 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS 242 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc
Confidence 9999999954 567777774 456799999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCC--CC-----------------------------CceeE------EEe-
Q 003279 720 HKNQVHSVCWNTSGEYLASVSDELVRVWSIGS--GS-----------------------------KGECI------HEL- 761 (834)
Q Consensus 720 h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s--~~-----------------------------~~~~i------~~~- 761 (834)
|...|.+++|+|++.+|+++.|+.|++|++.+ +. ..... ..+
T Consensus 243 ~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (372)
T 1k8k_C 243 ETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD 322 (372)
T ss_dssp SSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS
T ss_pred CCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccccc
Confidence 99999999999999999988899999999987 31 00110 222
Q ss_pred ecCCCceEEEEEe-CCC---CEEEEEEcCCeEEEEECCCCe
Q 003279 762 SCTGNKFHSCVFH-PTF---PSLLVIGCYETLELWNMTENK 798 (834)
Q Consensus 762 ~~~~~~I~svafs-pdg---~~L~sgs~dg~I~Iwdl~~~~ 798 (834)
..|...|.+++|+ +++ .+|++++.|+.|++||+.+++
T Consensus 323 ~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 323 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 4788999999866 666 899999999999999987644
No 82
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4.9e-33 Score=302.67 Aligned_cols=250 Identities=20% Similarity=0.269 Sum_probs=206.2
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--EEEEeccCCCCeEEEEECC--CCCEEEEEeCCCeEEEE
Q 003279 546 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVW 621 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~--~~~~l~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~IW 621 (834)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++. .+..+.+|.+.|++++|++ ++.+|++|+.|++|+||
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 3467999999999999999999999999999999998775 4678899999999999986 48999999999999999
Q ss_pred ecCCCC-ceeeeeccCCCCeEEEEEccCC-CcEEEEEeCCCcEEEEECCCCcee---eEe-ecCCCeeEEEEecC-----
Q 003279 622 DTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCA---GVF-KCQSGATQMRFQPR----- 690 (834)
Q Consensus 622 Dl~s~~-~~i~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~lwDl~s~~~i---~~~-~~~~~i~~l~~sp~----- 690 (834)
|+.++. .....+.+|...|.+++|+|++ ..+|++++.|+.|++||++.+... ..+ .+...+.+++|+|+
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence 998764 2456778899999999999983 457889999999999999876322 222 23456889999987
Q ss_pred ------------CCEEEEEEcCCeEEEEECCCC---eEEEEEeCCCCCEEEEEEcCCC----CEEEEEe-CCeEEEEEcC
Q 003279 691 ------------LGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVRVWSIG 750 (834)
Q Consensus 691 ------------g~~ll~~s~dg~I~iwDl~t~---~~~~~l~~h~~~I~sl~~spdg----~~Lasgs-Dg~I~IwDl~ 750 (834)
+.+|++++.|+.|++||++.. .++..+.+|...|.+++|+|++ .+|++++ |++|+|||+.
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~ 246 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD 246 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence 368999999999999999865 5677888999999999999986 7899998 9999999998
Q ss_pred CCCCc-eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003279 751 SGSKG-ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 751 s~~~~-~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
+.... .....+..|...|.+++|+|++.+|++++.|+.|+||+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 247 DASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp STTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 63211 1223345678899999999999999999999999999975
No 83
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.1e-32 Score=302.41 Aligned_cols=273 Identities=18% Similarity=0.253 Sum_probs=233.4
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~-gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
..+++++.|+.|++|...... ....+. .|...|++++|+|++++|++|+.||.|+|||+.
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~~-------------------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSGS-------------------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp TSEEEEEETTEEEEEETTTCC-------------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCEEEEECCCeEEEeeCCCCc-------------------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 456778899999999664321 112222 389999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 003279 583 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 662 (834)
Q Consensus 583 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 662 (834)
+++.+..+.+|...|.+++| ++.+|++++.||.|++||+......+..+.+|...|.+++|+|++. +|++++.|+.|
T Consensus 165 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v 241 (401)
T 4aez_A 165 SQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-QLASGGNDNVV 241 (401)
T ss_dssp TCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCE
T ss_pred CCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC-EEEEEeCCCeE
Confidence 99999999999999999999 5679999999999999999976667888999999999999999866 67799999999
Q ss_pred EEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEE---cCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 003279 663 RYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAA---IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 738 (834)
Q Consensus 663 ~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s---~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Las 738 (834)
++||+++++.+..+. +...+.+++|+|++..+++.+ .|+.|++||+++++++..+. +...|.+++|+|++.+|++
T Consensus 242 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~ 320 (401)
T 4aez_A 242 QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMS 320 (401)
T ss_dssp EEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEE
T ss_pred EEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEE
Confidence 999999998887775 567799999999876665544 59999999999999988887 6778999999999999998
Q ss_pred E--e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 739 V--S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 739 g--s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
+ . |+.|++||+.++.. .....+..|...|.+++|+|++.+|++++.|+.|++||+.+++.+
T Consensus 321 ~~g~~dg~i~v~~~~~~~~-~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 321 THGFPDNNLSIWSYSSSGL-TKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp EECTTTCEEEEEEEETTEE-EEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred EeecCCCcEEEEecCCccc-eeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 4 3 89999999988632 344456788999999999999999999999999999999998876
No 84
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.9e-32 Score=298.13 Aligned_cols=289 Identities=17% Similarity=0.231 Sum_probs=237.1
Q ss_pred CCceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEe--cCCCCC
Q 003279 477 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI--PASTSK 554 (834)
Q Consensus 477 ~~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l--~gH~~~ 554 (834)
.....+.|+++. .+.+..+++++.++.|++|..... .....+..+ ..|...
T Consensus 19 ~~v~~i~~~p~~-----------~~~~~~~~~~~~~~~v~vw~~~~~----------------~~~~~~~~~~~~~~~~~ 71 (366)
T 3k26_A 19 QPLFGVQFNWHS-----------KEGDPLVFATVGSNRVTLYECHSQ----------------GEIRLLQSYVDADADEN 71 (366)
T ss_dssp SCEEEEEECTTC-----------CTTSCEEEEEEETTEEEEEEECGG----------------GCEEEEEEEECSCTTCC
T ss_pred CceEEEEEeccc-----------CCCCceEEEECCCCEEEEEEcCCC----------------cEEEeeeeccccCCCCc
Confidence 456667777642 112344555555669999965432 111222222 248899
Q ss_pred eEEEEEcCC----CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCCce
Q 003279 555 VESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYS 629 (834)
Q Consensus 555 V~sl~fSpd----g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~s~~~~ 629 (834)
|++++|+|+ +.+|++|+.||.|+|||+.+++.+..+.+|...|.+++|+| ++.+|++++.||.|++||+.++..
T Consensus 72 v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~- 150 (366)
T 3k26_A 72 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL- 150 (366)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE-
T ss_pred EEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE-
Confidence 999999999 67999999999999999999999999999999999999999 899999999999999999997653
Q ss_pred eeee---ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-----------------------------
Q 003279 630 LRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----------------------------- 677 (834)
Q Consensus 630 i~~~---~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~----------------------------- 677 (834)
+..+ ..|...|.+++|+|++. +|++++.||.|++||+++++....+.
T Consensus 151 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (366)
T 3k26_A 151 VAIFGGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI 229 (366)
T ss_dssp EEEECSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSS
T ss_pred EEEecccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccC
Confidence 5555 68999999999999876 66789999999999999876554333
Q ss_pred cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe--------------EEEEEeCCCCCEEEEEEcCC--CCEEEEEe-
Q 003279 678 CQSGATQMRFQPRLGRILAAAIENYISILDVETQV--------------CRLKLQGHKNQVHSVCWNTS--GEYLASVS- 740 (834)
Q Consensus 678 ~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~--------------~~~~l~~h~~~I~sl~~spd--g~~Lasgs- 740 (834)
+...|.+++|+ +.++++++.|+.|++||++++. .+..+..|...|.+++|+|+ +.+|++++
T Consensus 230 ~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 230 HRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp CSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT
T ss_pred CcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEec
Confidence 56779999999 6799999999999999998763 47888889999999999999 99999999
Q ss_pred CCeEEEEEcCCCCCce-eEEEeecC--CCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 741 DELVRVWSIGSGSKGE-CIHELSCT--GNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 741 Dg~I~IwDl~s~~~~~-~i~~~~~~--~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
|+.|++||+.++.... ....+..| ...|.+++|+|++.+|++++.|+.|++||+.+
T Consensus 308 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 308 VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 9999999999875433 45566666 78999999999999999999999999999853
No 85
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.8e-31 Score=303.42 Aligned_cols=273 Identities=25% Similarity=0.465 Sum_probs=242.3
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEec
Q 003279 544 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 623 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 623 (834)
....+.+|.+.|.. +++++|++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ +.+|++|+.||+|++||+
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~ 186 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNA 186 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEEC
Confidence 34678899987643 245568999999999999999999999999999999999999997 569999999999999999
Q ss_pred CCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCe
Q 003279 624 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENY 702 (834)
Q Consensus 624 ~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~ 702 (834)
.++. .+..+.+|...|.+++|++ ..+++|+.||.|++||+++++++..+.. ...+.++.| ++..+++++.|+.
T Consensus 187 ~~~~-~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~ 260 (445)
T 2ovr_B 187 ETGE-CIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFM 260 (445)
T ss_dssp TTTE-EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSC
T ss_pred CcCc-EEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCE
Confidence 9865 4788889999999999973 3688999999999999999998888764 567888888 6789999999999
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 003279 703 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 781 (834)
Q Consensus 703 I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~ 781 (834)
|++||+++++++..+.+|...|.+++| ++.++++++ |+.|++||++++ .++..+..|...+.++.++ +.+|+
T Consensus 261 i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~--~~~l~ 333 (445)
T 2ovr_B 261 VKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGMELK--DNILV 333 (445)
T ss_dssp EEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC---CEEEEECCCCSCEEEEEEE--TTEEE
T ss_pred EEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC---CEEEEEcCCcccEEEEEEe--CCEEE
Confidence 999999999999999999999999999 788999988 999999999988 6788888888888888875 56899
Q ss_pred EEEcCCeEEEEECCCCeEE-Eecc---CCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 782 VIGCYETLELWNMTENKTL-TLSA---HDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 782 sgs~dg~I~Iwdl~~~~~~-~l~~---h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+++.|+.|++||+.+++.+ .+.. |...|.+++|+ +.+|++|+.||.|+|||
T Consensus 334 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd 388 (445)
T 2ovr_B 334 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD 388 (445)
T ss_dssp EEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence 9999999999999998877 4444 88999999995 68999999999999996
No 86
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4e-32 Score=292.55 Aligned_cols=247 Identities=19% Similarity=0.358 Sum_probs=210.5
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC-ceeeeeccCCCCeEEEEEccC-CCcEEEEEeCCCcEEEE
Q 003279 588 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYW 665 (834)
Q Consensus 588 ~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~-~~i~~~~~h~~~V~sl~fspd-g~~llasgs~Dg~I~lw 665 (834)
..+.+|.+.|++++|+|++++||+|+.|++|+|||+.... ..+..+.+|...|.+++|+++ ...+|++|+.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 4577899999999999999999999999999999997532 346788999999999999864 24588899999999999
Q ss_pred ECCCCc--eeeEee-cCCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCCe--EEEEEeCCCCCEEEEEEcCC------
Q 003279 666 SINNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTS------ 732 (834)
Q Consensus 666 Dl~s~~--~i~~~~-~~~~i~~l~~sp~--g~~ll~~s~dg~I~iwDl~t~~--~~~~l~~h~~~I~sl~~spd------ 732 (834)
|+++++ .+..+. +...|.+++|+|+ +.+|++++.|+.|++||++++. ....+.+|...|.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 999874 334443 4677999999997 7899999999999999998763 24567789999999999997
Q ss_pred -------CCEEEEEe-CCeEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCC---CEEEEEEcCCeEEEEECCCCe--
Q 003279 733 -------GEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENK-- 798 (834)
Q Consensus 733 -------g~~Lasgs-Dg~I~IwDl~s~~~-~~~i~~~~~~~~~I~svafspdg---~~L~sgs~dg~I~Iwdl~~~~-- 798 (834)
+.+|++++ |+.|+|||++++.. ......+.+|...|.+++|+|++ .+|++++.|++|+|||+.+..
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 56899988 99999999987642 22566788899999999999995 789999999999999997742
Q ss_pred --EEEe--ccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 799 --TLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 799 --~~~l--~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
...+ ..|...|.+++|+|++++||+++.||.|+||+
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 1222 46889999999999999999999999999995
No 87
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-31 Score=284.62 Aligned_cols=267 Identities=16% Similarity=0.209 Sum_probs=230.8
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
+.++++|+.|+.|++|..... .....+..|...|.+++|+|++++|++|+.|+.|++|++.
T Consensus 29 ~~~l~s~~~dg~v~vw~~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 89 (313)
T 3odt_A 29 DSKVASVSRDGTVRLWSKDDQ-------------------WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLF 89 (313)
T ss_dssp TTEEEEEETTSEEEEEEESSS-------------------EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred CCEEEEEEcCCcEEEEECCCC-------------------EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEee
Confidence 367899999999999965322 2356677899999999999999999999999999999987
Q ss_pred CC---eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC
Q 003279 583 SF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 659 (834)
Q Consensus 583 t~---~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D 659 (834)
.. +.+..+.+|...|.+++| ++.+|++++.|+.|++|| .......+..|...|.+++|.|....++++++.|
T Consensus 90 ~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 164 (313)
T 3odt_A 90 ATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK---EGSLVYNLQAHNASVWDAKVVSFSENKFLTASAD 164 (313)
T ss_dssp CCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE---TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETT
T ss_pred ecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc---CCcEEEecccCCCceeEEEEccCCCCEEEEEECC
Confidence 54 667788899999999999 677999999999999999 2345778888999999999999445578899999
Q ss_pred CcEEEEECCCCceeeEee--cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEE
Q 003279 660 SEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 737 (834)
Q Consensus 660 g~I~lwDl~s~~~i~~~~--~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~La 737 (834)
+.|++||. .+....+. +...+.+++|+|++. +++++.|+.|++||+++++.+..+.+|...|++++|+|++. |+
T Consensus 165 ~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~ 240 (313)
T 3odt_A 165 KTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IV 240 (313)
T ss_dssp SCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EE
T ss_pred CCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EE
Confidence 99999994 44455444 567899999999977 99999999999999999999999999999999999999995 55
Q ss_pred EEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE
Q 003279 738 SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT 801 (834)
Q Consensus 738 sgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~ 801 (834)
+++ |+.|++||+.++ +.+..+..+...|.+++|+|++. +++++.|+.|++||+.+++...
T Consensus 241 ~~~~dg~v~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 241 SCGEDRTVRIWSKENG---SLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp EEETTSEEEEECTTTC---CEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred EEecCCEEEEEECCCC---ceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence 555 999999999988 67888888999999999999998 6789999999999999887663
No 88
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.8e-31 Score=298.22 Aligned_cols=272 Identities=19% Similarity=0.302 Sum_probs=233.0
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
++|++| +|++|++|..... . ...+..+.+|...|+||+|+|||++||+|+.||.|+|||+++
T Consensus 117 n~lAvg-ld~tV~lWd~~tg----------------~-~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~ 178 (420)
T 4gga_A 117 NVLAVA-LDNSVYLWSASSG----------------D-ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ 178 (420)
T ss_dssp SEEEEE-ETTEEEEEETTTC----------------C-EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CEEEEE-eCCEEEEEECCCC----------------C-EEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC
Confidence 467776 4899999965432 1 122334568899999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 663 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 663 (834)
++.+..+.+|...|.++.|+ +.+|++|+.|+.+++||.......+..+.+|...+.++.|+|++. ++++++.|+.|+
T Consensus 179 ~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~-~l~s~~~D~~v~ 255 (420)
T 4gga_A 179 QKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVN 255 (420)
T ss_dssp TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred CcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCC-eeeeeeccccce
Confidence 99999999999999999885 679999999999999999987777888999999999999999976 677999999999
Q ss_pred EEECCCCcee-----eEeecCCCeeEEEEecCCCEEE-EE--EcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCE
Q 003279 664 YWSINNGSCA-----GVFKCQSGATQMRFQPRLGRIL-AA--AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY 735 (834)
Q Consensus 664 lwDl~s~~~i-----~~~~~~~~i~~l~~sp~g~~ll-~~--s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~ 735 (834)
+||+.+++.. ....+...|.+++|+|.+..++ ++ +.|+.|++||+.++.+...+..| ..+.++.|++++..
T Consensus 256 i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~ 334 (420)
T 4gga_A 256 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKE 334 (420)
T ss_dssp EEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTE
T ss_pred EEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCe
Confidence 9999876532 2233467799999999766554 33 35899999999999999888854 57899999999998
Q ss_pred EEEEe---CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 736 LASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 736 Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
+++++ |+.|+|||+.++ .++..+.+|...|.+++|+|+|.+|++++.|++|+|||+.+..+.
T Consensus 335 lv~~sg~~d~~I~iwd~~~~---~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 335 LISGHGFAQNQLVIWKYPTM---AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp EEEEECTTTCCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred EEEEEecCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence 88764 889999999988 788899999999999999999999999999999999999776544
No 89
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.4e-31 Score=297.29 Aligned_cols=267 Identities=15% Similarity=0.171 Sum_probs=222.4
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~IWd~~ 582 (834)
.++++|+.|+.|++|....... .....+.+|.+.|.+++|+| ++++|++++.|+.|++||+.
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~-----------------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDYDVQNK-----------------TSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS 149 (383)
T ss_dssp TEEEEEEBTSCEEEEETTSTTC-----------------EEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT
T ss_pred CEEEEEcCCCeEEEEeCCCccc-----------------ceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC
Confidence 6889999999999997653311 11223357999999999999 78999999999999999998
Q ss_pred CCeEEEEecc---CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC
Q 003279 583 SFTVKSTLEE---HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 659 (834)
Q Consensus 583 t~~~~~~l~~---h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D 659 (834)
+ ..+..+.. |...|.+++|+|++.+|++++.|+.|++||+. ...+..+.+|...|.+++|+|++..+|++++.|
T Consensus 150 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 226 (383)
T 3ei3_B 150 G-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVD 226 (383)
T ss_dssp S-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SCEEEEEECSSSCEEEEEECSSCTTEEEEEETT
T ss_pred C-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCC
Confidence 6 45555543 44889999999999999999999999999995 335788889999999999999988788899999
Q ss_pred CcEEEEECCC----CceeeEeecCCCeeEEEEec-CCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC-------------
Q 003279 660 SEIRYWSINN----GSCAGVFKCQSGATQMRFQP-RLGRILAAAIENYISILDVETQVCRLKLQGHK------------- 721 (834)
Q Consensus 660 g~I~lwDl~s----~~~i~~~~~~~~i~~l~~sp-~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~------------- 721 (834)
+.|++||+++ +.++..+.+...+.+++|+| ++.+|++++.|+.|++||++++.....+.+|.
T Consensus 227 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (383)
T 3ei3_B 227 ATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT 306 (383)
T ss_dssp SEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCE
T ss_pred CEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEe
Confidence 9999999998 67788888888999999999 99999999999999999999886655555442
Q ss_pred ----CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec--CCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 722 ----NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 722 ----~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~--~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
..+..++|+|++++ +++ |+.|+|||+.++ +.+..+.. +...+..++|+|++.+|++++ |+.|+|||+
T Consensus 307 ~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~---~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~ 380 (383)
T 3ei3_B 307 WHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSG---GLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNR 380 (383)
T ss_dssp ECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTC---CEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEEC
T ss_pred ccCCCCceEEEecCCccc--ccCCCCeEEEEecCCC---ceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEec
Confidence 33445666677766 444 999999999988 66777766 456778889999999999996 899999998
Q ss_pred CC
Q 003279 795 TE 796 (834)
Q Consensus 795 ~~ 796 (834)
++
T Consensus 381 ~~ 382 (383)
T 3ei3_B 381 ED 382 (383)
T ss_dssp C-
T ss_pred CC
Confidence 75
No 90
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-31 Score=294.68 Aligned_cols=252 Identities=21% Similarity=0.308 Sum_probs=217.6
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCeEEEEeccCCCCeEEEEECCC--CCEEEEEeCCCeEEE
Q 003279 545 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRV 620 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~--t~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~I 620 (834)
+..+.+|.+.|++++|+|++++||+|+.||.|+|||+. +++.+..+.+|...|++++|+++ +.+|++++.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 56778999999999999999999999999999999998 66777889999999999999987 999999999999999
Q ss_pred EecCCCCc-eeeeeccCCCCeEEEEEccCC-CcEEEEEeCCCcEEEEECCCCceee---EeecCCCeeEEEEec------
Q 003279 621 WDTENPDY-SLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAG---VFKCQSGATQMRFQP------ 689 (834)
Q Consensus 621 WDl~s~~~-~i~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~lwDl~s~~~i~---~~~~~~~i~~l~~sp------ 689 (834)
||+.++.. .+..+..|...|.+++|+|+. ..+|++++.|+.|++||++++.... ...+...+.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 99998652 467778899999999999983 3477799999999999999874332 223567899999999
Q ss_pred -------CCCEEEEEEcCCeEEEEECCCC----eEEEEEeCCCCCEEEEEEcCC---CCEEEEEe-CCeEEEEEcCCCCC
Q 003279 690 -------RLGRILAAAIENYISILDVETQ----VCRLKLQGHKNQVHSVCWNTS---GEYLASVS-DELVRVWSIGSGSK 754 (834)
Q Consensus 690 -------~g~~ll~~s~dg~I~iwDl~t~----~~~~~l~~h~~~I~sl~~spd---g~~Lasgs-Dg~I~IwDl~s~~~ 754 (834)
++..+++++.|+.|++||++++ .....+.+|...|.+++|+|+ +.+|++++ |+.|++||++++..
T Consensus 164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~ 243 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 243 (379)
T ss_dssp ------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc
Confidence 6899999999999999999875 355678889999999999999 89999999 99999999998643
Q ss_pred ceeEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 755 GECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 755 ~~~i~~~--~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
......+ ..+...|.+++|+|++.+|++++.|+.|++|++..
T Consensus 244 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 244 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp CCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred cceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 2233333 33778899999999999999999999999999873
No 91
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=5.6e-32 Score=303.39 Aligned_cols=279 Identities=15% Similarity=0.229 Sum_probs=235.8
Q ss_pred CCeEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCe----EEEEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCC
Q 003279 553 SKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENP 626 (834)
Q Consensus 553 ~~V~sl~fSpdg~~L-asgs~Dg~I~IWd~~t~~----~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~s~ 626 (834)
.....++++|+...+ ++++.||.|+||++.... .+..+.+|.+.|++++|+| ++.+|++|+.||+|+|||+.++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence 345568899887544 457889999999986542 3445778999999999999 8999999999999999999876
Q ss_pred C------ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEe--e-cCCCeeEEEEecCCCEEEEE
Q 003279 627 D------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--K-CQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 627 ~------~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~--~-~~~~i~~l~~sp~g~~ll~~ 697 (834)
. ..+..+.+|...|.+++|+|++..+|++++.|+.|++||+++++.+..+ . +...|.+++|+|++.+|+++
T Consensus 115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 194 (402)
T 2aq5_A 115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS 194 (402)
T ss_dssp CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEE
T ss_pred CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEE
Confidence 3 3467888999999999999998778999999999999999999998888 3 56779999999999999999
Q ss_pred EcCCeEEEEECCCCeEEEEE-eCCCCC-EEEEEEcCCCCEEEEE---e-CCeEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003279 698 AIENYISILDVETQVCRLKL-QGHKNQ-VHSVCWNTSGEYLASV---S-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 771 (834)
Q Consensus 698 s~dg~I~iwDl~t~~~~~~l-~~h~~~-I~sl~~spdg~~Lasg---s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 771 (834)
+.|+.|++||+++++.+..+ ..|... +.+++|+|++.+|+++ + |+.|++||+++......... ..+...+.++
T Consensus 195 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~ 273 (402)
T 2aq5_A 195 CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE-LDTSSGVLLP 273 (402)
T ss_dssp ETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE-CCCCSSCEEE
T ss_pred ecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe-ccCCCceeEE
Confidence 99999999999999999988 678776 8999999999999998 5 89999999998743222222 2456779999
Q ss_pred EEeCCCCEEEEEE-cCCeEEEEECCCCe--EEEec--cCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 772 VFHPTFPSLLVIG-CYETLELWNMTENK--TLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 772 afspdg~~L~sgs-~dg~I~Iwdl~~~~--~~~l~--~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+|+|++.+|++++ .|+.|++||+.+++ ...+. .|...|.+++|+|++.++++ .|+.+++|+
T Consensus 274 ~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~ 339 (402)
T 2aq5_A 274 FFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYK 339 (402)
T ss_dssp EEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred EEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEE
Confidence 9999999997665 69999999999887 33333 36699999999999988764 577899995
No 92
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-32 Score=305.04 Aligned_cols=275 Identities=14% Similarity=0.167 Sum_probs=218.0
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 581 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~ 581 (834)
...++++|+.|+.|++|..... .+..+..+.+|.+.|++++|+|++++|++|+.|+.|+|||+
T Consensus 22 ~g~~l~~~~~d~~i~iw~~~~~-----------------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 22 QRTEFVTTTATNQVELYEQDGN-----------------GWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp SSSEEECCCSSSCBCEEEEETT-----------------EEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred CCCEEEEecCCCEEEEEEccCC-----------------ceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 3478999999999999965322 12345677899999999999999999999999999999999
Q ss_pred CCCe---EEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc--eeeeecc-CCCCeEEEEEccCCCcEEEE
Q 003279 582 ESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTG-HSTTVMSLDFHPSKEDLLCS 655 (834)
Q Consensus 582 ~t~~---~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~--~i~~~~~-h~~~V~sl~fspdg~~llas 655 (834)
.+++ ....+..|...|.+++|+|++++|++++.|+.|++||+.+... ....+.. |...|.+++|+|++. +|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~ 163 (377)
T 3dwl_C 85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV-LLAA 163 (377)
T ss_dssp ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS-EEEE
T ss_pred CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC-EEEE
Confidence 9877 6777889999999999999999999999999999999997652 3566666 999999999999976 7779
Q ss_pred EeCCCcEEEEECC------------------CCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE----
Q 003279 656 CDNNSEIRYWSIN------------------NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC---- 713 (834)
Q Consensus 656 gs~Dg~I~lwDl~------------------s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~---- 713 (834)
++.|+.|++||++ .++++..+.+...|.+++|+|++.+|++++.|+.|++||+++++.
T Consensus 164 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 243 (377)
T 3dwl_C 164 GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA 243 (377)
T ss_dssp EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCccee
Confidence 9999999999985 244555555667799999999999999999999999999999876
Q ss_pred EEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCC---------------------------ceeE------EE
Q 003279 714 RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK---------------------------GECI------HE 760 (834)
Q Consensus 714 ~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~---------------------------~~~i------~~ 760 (834)
+..+.+|...|.+++|+|++++|++++++.+.+|+...... ...+ ..
T Consensus 244 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (377)
T 3dwl_C 244 LITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRST 323 (377)
T ss_dssp CCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC------------
T ss_pred eEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEEeeeccccccccccccccccccccccccccccccccc
Confidence 77888999999999999999999999977677887763210 0000 00
Q ss_pred e----------------ecCCCceEEEEEeCCCC----EEEEEEcCCeEEEEEC
Q 003279 761 L----------------SCTGNKFHSCVFHPTFP----SLLVIGCYETLELWNM 794 (834)
Q Consensus 761 ~----------------~~~~~~I~svafspdg~----~L~sgs~dg~I~Iwdl 794 (834)
+ ..|...|.++++.+... .|++++.||.|+|||+
T Consensus 324 ~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 324 FRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 1 12888999999766543 5999999999999985
No 93
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.6e-30 Score=288.76 Aligned_cols=318 Identities=14% Similarity=0.248 Sum_probs=227.0
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~IWd~~ 582 (834)
.++++|+.|+.|++|............... ..........+|...|.+++|+| ++.+|++++.||.|++||+.
T Consensus 57 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 130 (408)
T 4a11_B 57 RYMLSGGSDGVIVLYDLENSSRQSYYTCKA------VCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTN 130 (408)
T ss_dssp CEEEEEETTSCEEEEECCCCSSSSCEEECE------EEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETT
T ss_pred CEEEEEcCCCeEEEEECCCCcccceEeccc------cccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCC
Confidence 789999999999999776543221110000 00000111246999999999999 78899999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCC---CCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC
Q 003279 583 SFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 659 (834)
Q Consensus 583 t~~~~~~l~~h~~~I~~l~fspd---g~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D 659 (834)
+++.+..+. +...+.++.|++. +.+|++++.|+.|++||+.++.. +..+..|...|.+++|+|++..+|++++.|
T Consensus 131 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~ll~~~~~d 208 (408)
T 4a11_B 131 TLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC-SHILQGHRQEILAVSWSPRYDYILATASAD 208 (408)
T ss_dssp TTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-CEEECCCCSCEEEEEECSSCTTEEEEEETT
T ss_pred CCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-eeeecCCCCcEEEEEECCCCCcEEEEEcCC
Confidence 999988876 7788999999984 45999999999999999997654 678888999999999999999889999999
Q ss_pred CcEEEEECCCCc-eeeEe----------------ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC-
Q 003279 660 SEIRYWSINNGS-CAGVF----------------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK- 721 (834)
Q Consensus 660 g~I~lwDl~s~~-~i~~~----------------~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~- 721 (834)
|.|++||++++. ++..+ .+...+.+++|+|++.+|++++.|+.|++||+++++....+..+.
T Consensus 209 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 288 (408)
T 4a11_B 209 SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVC 288 (408)
T ss_dssp SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCC
T ss_pred CcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccc
Confidence 999999998765 33332 245679999999999999999999999999999887654443221
Q ss_pred -----CCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 722 -----NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 722 -----~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
.....+.......+++++.|+.|++||+.++ ..+..+..|...|.+++|+|++.+|++++.|+.|++||+.+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 365 (408)
T 4a11_B 289 NNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL 365 (408)
T ss_dssp CCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC---CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC
T ss_pred ccccccceeEEecCCCceEEEEecCCEEEEEECcCC---cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC
Confidence 1222333344556666666999999999988 78888999999999999999999999999999999999999
Q ss_pred CeEEEeccCCCCeEEEEEeC-CCCEEEEEecCCcEEEeC
Q 003279 797 NKTLTLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK 834 (834)
Q Consensus 797 ~~~~~l~~h~~~V~~lafsp-dg~~LaSgs~DG~I~IWd 834 (834)
++.+......... ..+.+ ....+.+++.|+.|++|+
T Consensus 366 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~W~ 402 (408)
T 4a11_B 366 YEPVPDDDETTTK--SQLNPAFEDAWSSSDEEGGTSAWS 402 (408)
T ss_dssp ---------------------------------------
T ss_pred CCccCCCCceEec--cccccccceeecccCccCceeecC
Confidence 8877432222222 22233 334566778899999995
No 94
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.8e-31 Score=303.23 Aligned_cols=285 Identities=14% Similarity=0.201 Sum_probs=226.7
Q ss_pred CceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEE
Q 003279 478 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 557 (834)
Q Consensus 478 ~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~s 557 (834)
...++.|+|.. +.+|++|+.|+.|++|....... ..+..+.+|.+.|++
T Consensus 121 ~V~~l~~~P~~--------------~~~lasGs~dg~i~lWd~~~~~~-----------------~~~~~~~gH~~~V~~ 169 (435)
T 4e54_B 121 RATSLAWHPTH--------------PSTVAVGSKGGDIMLWNFGIKDK-----------------PTFIKGIGAGGSITG 169 (435)
T ss_dssp CEEEEEECSSC--------------TTCEEEEETTSCEEEECSSCCSC-----------------CEEECCCSSSCCCCE
T ss_pred CEEEEEEeCCC--------------CCEEEEEeCCCEEEEEECCCCCc-----------------eeEEEccCCCCCEEE
Confidence 45677777643 36899999999999996543211 123456799999999
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecc--CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeec
Q 003279 558 CHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 634 (834)
Q Consensus 558 l~fSp-dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~--h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~ 634 (834)
|+|+| ++.+|++|+.||+|+|||+++......... +...+.+++|++++.+|++|+.||.|++||++.. .+..+.
T Consensus 170 l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--~~~~~~ 247 (435)
T 4e54_B 170 LKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--ELWNLR 247 (435)
T ss_dssp EEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--BCCCSB
T ss_pred EEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--eeEEEe
Confidence 99998 789999999999999999987655444433 3456789999999999999999999999999753 367788
Q ss_pred cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEe----ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003279 635 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KCQSGATQMRFQPRLGRILAAAIENYISILDVET 710 (834)
Q Consensus 635 ~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~----~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t 710 (834)
+|...|.+++|+|++..+|++|+.|+.|++||+++.+....+ .+...|.+++|+|++.+|++++.|+.|++||+++
T Consensus 248 ~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~ 327 (435)
T 4e54_B 248 MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ 327 (435)
T ss_dssp CCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSS
T ss_pred cccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCC
Confidence 999999999999999989999999999999999887654433 3567899999999999999999999999999999
Q ss_pred CeEEEEEeCCCC------CEEEEEEcCCCCEEEEEe-------------CCeEEEEEcCCCCCceeEEEe-ecCCCceEE
Q 003279 711 QVCRLKLQGHKN------QVHSVCWNTSGEYLASVS-------------DELVRVWSIGSGSKGECIHEL-SCTGNKFHS 770 (834)
Q Consensus 711 ~~~~~~l~~h~~------~I~sl~~spdg~~Lasgs-------------Dg~I~IwDl~s~~~~~~i~~~-~~~~~~I~s 770 (834)
+.+...+..|.. .+..+.|+|++.+++++. ++.|++||..++ ..+..+ ..|...|.+
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g---~~~~~l~~~~~~~v~s 404 (435)
T 4e54_B 328 WDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG---KMMCQLYDPESSGISS 404 (435)
T ss_dssp SSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC---CEEEEECCSSCCCCCC
T ss_pred CccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC---cEEEEEeCCCCCcEEE
Confidence 988777766543 233557777777776654 247999999988 555554 457777877
Q ss_pred E-EEeCCCCEEEEEEcCCeEEEEECCCCeE
Q 003279 771 C-VFHPTFPSLLVIGCYETLELWNMTENKT 799 (834)
Q Consensus 771 v-afspdg~~L~sgs~dg~I~Iwdl~~~~~ 799 (834)
+ +|+|+|.+|++++ |+.|+|||+++++.
T Consensus 405 ~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 405 LNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp EEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred EEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 7 6999999887765 88999999998865
No 95
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.7e-32 Score=296.81 Aligned_cols=246 Identities=19% Similarity=0.325 Sum_probs=204.5
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc-eeeeeccCCCCeEEEEEccC-CCcEEEEEeCCCcEEEEE
Q 003279 589 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWS 666 (834)
Q Consensus 589 ~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~-~i~~~~~h~~~V~sl~fspd-g~~llasgs~Dg~I~lwD 666 (834)
.+.+|.+.|++++|+|++++|++|+.|++|+|||+.++.. .+..+.+|...|.+++|+++ ...+|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 4568999999999999999999999999999999987643 45778899999999999863 244788999999999999
Q ss_pred CCCCc--eeeEee-cCCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCCe---EEEEEeCCCCCEEEEEEcCC------
Q 003279 667 INNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQV---CRLKLQGHKNQVHSVCWNTS------ 732 (834)
Q Consensus 667 l~s~~--~i~~~~-~~~~i~~l~~sp~--g~~ll~~s~dg~I~iwDl~t~~---~~~~l~~h~~~I~sl~~spd------ 732 (834)
++++. ....+. +...|.+++|+|+ +.+|++++.|+.|++||++.+. ....+.+|...|.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 99874 444443 4667999999998 7789999999999999998763 23455679999999999997
Q ss_pred -----------CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC----CEEEEEEcCCeEEEEECCC
Q 003279 733 -----------GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 733 -----------g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg----~~L~sgs~dg~I~Iwdl~~ 796 (834)
+.+|++++ |+.|++||++......++..+..|...|.+++|+|++ .+|++++.|++|+|||+.+
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 46888888 9999999997654335677788899999999999987 7899999999999999876
Q ss_pred C---e--EEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 797 N---K--TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 797 ~---~--~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
. . ...+..|...|.+++|+|++.+||+++.||.|+||+
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 2 1 124567899999999999999999999999999996
No 96
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.5e-30 Score=293.41 Aligned_cols=285 Identities=9% Similarity=0.055 Sum_probs=244.6
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE-----EeccCCCCeEEEEECCCCCEEEEEeCCCe
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-----TLEEHTQWITDVRFSPSLSRLATSSADRT 617 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~-----~l~~h~~~I~~l~fspdg~~Latgs~Dg~ 617 (834)
..+..+..+. .+.+++|+|++.++++++.|+.|++||+.+++.+. .+.+|...|.+++|++++.++++++.|+.
T Consensus 114 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 192 (433)
T 3bws_A 114 RFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA 192 (433)
T ss_dssp EEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred eEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence 4455555554 46699999988888888889999999999998887 34578999999999999999999999999
Q ss_pred EEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEE
Q 003279 618 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 618 I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~ 697 (834)
|++||+.++.. +..+..|...+.+++|+|++..++++++.|+.|++||+++++.+..+.....+.+++|+|+++.++++
T Consensus 193 v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 271 (433)
T 3bws_A 193 VHVFDLKTLAY-KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIA 271 (433)
T ss_dssp EEEEETTTCCE-EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEE
T ss_pred EEEEECCCceE-EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEE
Confidence 99999987654 66777889999999999999988778878999999999999998888887889999999999999998
Q ss_pred E--------cCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE-e-CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003279 698 A--------IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV-S-DELVRVWSIGSGSKGECIHELSCTGNK 767 (834)
Q Consensus 698 s--------~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasg-s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 767 (834)
+ .|+.|++||+++++.+..+. |...+.+++|+|++++++++ + |+.|++||+.++ +.+..+. +...
T Consensus 272 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~---~~~~~~~-~~~~ 346 (433)
T 3bws_A 272 QFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK---KVQKSIP-VFDK 346 (433)
T ss_dssp EEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSS
T ss_pred ECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC---cEEEEec-CCCC
Confidence 8 47899999999998777664 56689999999999866554 5 899999999977 5555554 5677
Q ss_pred eEEEEEeCCCCEEEEEEc---------------CCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEec-CCcEE
Q 003279 768 FHSCVFHPTFPSLLVIGC---------------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-DKCVK 831 (834)
Q Consensus 768 I~svafspdg~~L~sgs~---------------dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~-DG~I~ 831 (834)
+.+++|+|++++|++++. ||.|++||+.+++.+....+...+.+++|+|++++|++++. |+.|+
T Consensus 347 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~ 426 (433)
T 3bws_A 347 PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIR 426 (433)
T ss_dssp EEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEE
T ss_pred CCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEE
Confidence 999999999999998887 46999999999998865556678999999999999988875 99999
Q ss_pred EeC
Q 003279 832 IWK 834 (834)
Q Consensus 832 IWd 834 (834)
||+
T Consensus 427 v~~ 429 (433)
T 3bws_A 427 VYR 429 (433)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
No 97
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-31 Score=288.24 Aligned_cols=250 Identities=20% Similarity=0.363 Sum_probs=214.6
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC-ceeeeeccCCCCeEEEEEccCC-CcEEEEEeCCCcE
Q 003279 585 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEI 662 (834)
Q Consensus 585 ~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~-~~i~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I 662 (834)
+.+..+.+|.+.|++++|+|++++|++++.||.|+|||+.... ..+..+.+|...|++++|+++. ..+|++++.||.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 4566788999999999999999999999999999999998432 3456788999999999998762 3478899999999
Q ss_pred EEEECCCCc--eeeEee-cCCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCC--eEEEEEeCCCCCEEEEEEcC----
Q 003279 663 RYWSINNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNT---- 731 (834)
Q Consensus 663 ~lwDl~s~~--~i~~~~-~~~~i~~l~~sp~--g~~ll~~s~dg~I~iwDl~t~--~~~~~l~~h~~~I~sl~~sp---- 731 (834)
++||+.+++ .+..+. +...+.+++|+|+ +..|++++.|+.|++||+++. .....+..|...|.+++|+|
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 999999986 444444 4678999999999 999999999999999999987 44556778999999999999
Q ss_pred ---------CCCEEEEEe-CCeEEEEEcCCCCCc-eeEEEeecCCCceEEEEEeCC---CCEEEEEEcCCeEEEEECCCC
Q 003279 732 ---------SGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCTGNKFHSCVFHPT---FPSLLVIGCYETLELWNMTEN 797 (834)
Q Consensus 732 ---------dg~~Lasgs-Dg~I~IwDl~s~~~~-~~i~~~~~~~~~I~svafspd---g~~L~sgs~dg~I~Iwdl~~~ 797 (834)
++.+|++++ |+.|++||++++... ..+..+..|...|.+++|+|+ +.+|++++.|+.|++||+.++
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 699999998 999999999876432 355678889999999999999 899999999999999999886
Q ss_pred e----EE--EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 798 K----TL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 798 ~----~~--~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
. .. ....|...|.+++|+|++++|++++.||.|+|||
T Consensus 242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred CccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 3 22 3335889999999999999999999999999996
No 98
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.98 E-value=1.5e-29 Score=271.59 Aligned_cols=270 Identities=19% Similarity=0.292 Sum_probs=228.0
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
++|++| .|++|++|+.... .. .....+.+|...|++++|+|++++||+|+.||+|+|||+++
T Consensus 37 ~~lAvg-~D~tV~iWd~~tg----------------~~-~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~ 98 (318)
T 4ggc_A 37 NVLAVA-LDNSVYLWSASSG----------------DI-LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ 98 (318)
T ss_dssp SEEEEE-ETTEEEEEETTTC----------------CE-EEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CEEEEE-eCCEEEEEECCCC----------------CE-EEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC
Confidence 367776 4899999965432 11 12234568899999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 663 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 663 (834)
++.+..+.+|...+.++.+ ++.+|++++.++.+++|+.......+..+.+|...+.++.|.+++. ++++++.|+.|+
T Consensus 99 ~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~ 175 (318)
T 4ggc_A 99 QKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVN 175 (318)
T ss_dssp TEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred ceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC-EEEEEecCccee
Confidence 9999999999999887766 4679999999999999999988877888999999999999999976 667999999999
Q ss_pred EEECCCCceee-----EeecCCCeeEEEEecCCCEEE---EEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCE
Q 003279 664 YWSINNGSCAG-----VFKCQSGATQMRFQPRLGRIL---AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY 735 (834)
Q Consensus 664 lwDl~s~~~i~-----~~~~~~~i~~l~~sp~g~~ll---~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~ 735 (834)
+||+++++... ...+...+.++.+++.+..++ +++.++.|++||.+......... +...+..++|++++..
T Consensus 176 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 254 (318)
T 4ggc_A 176 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKE 254 (318)
T ss_dssp EEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTE
T ss_pred EEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccc
Confidence 99998865332 222456789999999776544 33457899999999988776665 6778999999999998
Q ss_pred EEEEe---CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 003279 736 LASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 798 (834)
Q Consensus 736 Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~ 798 (834)
+++++ |+.|+|||+.++ +++..+.+|...|++++|+|++.+|++++.|++|+|||+.+..
T Consensus 255 ~~~~sg~~d~~i~iwd~~~~---~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 255 LISGHGFAQNQLVIWKYPTM---AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEEECTTTCCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred eEEEEEcCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 87654 889999999988 7888999999999999999999999999999999999997653
No 99
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.98 E-value=2.7e-30 Score=291.83 Aligned_cols=289 Identities=15% Similarity=0.270 Sum_probs=230.7
Q ss_pred CCceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCC----
Q 003279 477 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST---- 552 (834)
Q Consensus 477 ~~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~---- 552 (834)
....++.|++++ .++++|+.|+.|++|......... ......+..+..+.+|.
T Consensus 29 ~~V~~v~~s~~g---------------~~la~g~~dg~v~iw~~~~~~~~~--------~~~~~~~~~~~~~~~h~~~~~ 85 (447)
T 3dw8_B 29 DIISTVEFNHSG---------------ELLATGDKGGRVVIFQQEQENKIQ--------SHSRGEYNVYSTFQSHEPEFD 85 (447)
T ss_dssp GSEEEEEECSSS---------------SEEEEEETTSEEEEEEECC-------------CCCCCCEEEEEEEECCCCEEE
T ss_pred CcEEEEEECCCC---------------CEEEEEcCCCeEEEEEecCCCCCC--------cccccceeEeccccccccccc
Confidence 356667777755 789999999999999765543110 11122345677888998
Q ss_pred --------CCeEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCeEE-----------------------------------
Q 003279 553 --------SKVESCHFSPDG--KLLATGGHDKKAVLWCTESFTVK----------------------------------- 587 (834)
Q Consensus 553 --------~~V~sl~fSpdg--~~Lasgs~Dg~I~IWd~~t~~~~----------------------------------- 587 (834)
+.|++++|+|++ .+|++++.|+.|+|||+.++...
T Consensus 86 ~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 165 (447)
T 3dw8_B 86 YLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVE 165 (447)
T ss_dssp GGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEE
T ss_pred ccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeee
Confidence 899999999998 79999999999999998764432
Q ss_pred ----EE-eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceee-------eeccCCCCeEEEEEccCCCcEEEE
Q 003279 588 ----ST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR-------TFTGHSTTVMSLDFHPSKEDLLCS 655 (834)
Q Consensus 588 ----~~-l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~-------~~~~h~~~V~sl~fspdg~~llas 655 (834)
.. ..+|...|++++|+|++++|++| .|+.|++||+......+. .+.+|...|.+++|+|++..+|++
T Consensus 166 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s 244 (447)
T 3dw8_B 166 ASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVY 244 (447)
T ss_dssp EEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEE
T ss_pred ccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEE
Confidence 12 36899999999999999999998 899999999985443343 366899999999999998568889
Q ss_pred EeCCCcEEEEECCCCce----eeEeecCC-------------CeeEEEEecCCCEEEEEEcCCeEEEEECCC-CeEEEEE
Q 003279 656 CDNNSEIRYWSINNGSC----AGVFKCQS-------------GATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKL 717 (834)
Q Consensus 656 gs~Dg~I~lwDl~s~~~----i~~~~~~~-------------~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t-~~~~~~l 717 (834)
++.||.|++||+++++. +..+..+. .|.+++|+|++.+|++++. +.|++||+++ ++++..+
T Consensus 245 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~ 323 (447)
T 3dw8_B 245 SSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETY 323 (447)
T ss_dssp EETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCE
T ss_pred EeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccccee
Confidence 99999999999999886 56666543 7999999999999999998 9999999997 8888888
Q ss_pred eCCCCC---------------EEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-------------------
Q 003279 718 QGHKNQ---------------VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS------------------- 762 (834)
Q Consensus 718 ~~h~~~---------------I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~------------------- 762 (834)
.+|... +..++|+|++.+|++++ |+.|+|||+.++.. + .+.
T Consensus 324 ~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~ 399 (447)
T 3dw8_B 324 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD---I-TLEASRENNKPRTVLKPRKVCA 399 (447)
T ss_dssp ESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE---E-EEECCSTTCCTTCBCCCCCEEC
T ss_pred eccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc---e-eeeecccccccccccCCccccc
Confidence 877532 33499999999999999 99999999998732 2 111
Q ss_pred --------------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003279 763 --------------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 763 --------------~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
.....|..++|+|++..|++++.++ +++|..+
T Consensus 400 ~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 400 SGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp SSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred cCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 1235688999999999988887765 8888654
No 100
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=5.1e-30 Score=290.93 Aligned_cols=281 Identities=18% Similarity=0.367 Sum_probs=227.7
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
+.++++|+.|+.|++|..... ..+..+.+|.+.|.+++| ++++|++|+.||.|++||+.
T Consensus 143 ~~~l~~g~~dg~i~iwd~~~~-------------------~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 143 DQKIVSGLRDNTIKIWDKNTL-------------------ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp SSEEEEEESSSCEEEEESSSC-------------------CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred CCEEEEEeCCCeEEEEeCCCC-------------------eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 368899999999999965322 235677899999999999 78899999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCce--eeeeccCCCCeEEEEEccCCCcEEEEEeCCC
Q 003279 583 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 660 (834)
Q Consensus 583 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~--i~~~~~h~~~V~sl~fspdg~~llasgs~Dg 660 (834)
+++.+..+.+|...|.+++|++ .+|++|+.||.|++||+.++... ...+.+|...|.+++|. ..++++++.||
T Consensus 202 ~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg 276 (435)
T 1p22_A 202 TGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDR 276 (435)
T ss_dssp SCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE---TTEEEEEETTS
T ss_pred CCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC---CCEEEEEeCCC
Confidence 9999999999999999999974 59999999999999999876542 26778899999999994 34788999999
Q ss_pred cEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 003279 661 EIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 739 (834)
Q Consensus 661 ~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasg 739 (834)
.|++||+++++++..+.. ...+.++.++ +..+++++.|+.|++||+++++++..+.+|...|.+++| ++.+|+++
T Consensus 277 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg 352 (435)
T 1p22_A 277 TIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSG 352 (435)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEE
T ss_pred eEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEE
Confidence 999999999999988874 5678888884 679999999999999999999999999999999999999 78899999
Q ss_pred e-CCeEEEEEcCCCCC------ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEE
Q 003279 740 S-DELVRVWSIGSGSK------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSL 812 (834)
Q Consensus 740 s-Dg~I~IwDl~s~~~------~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~l 812 (834)
+ ||.|++||+.++.. ..++..+..|...|.+++| ++.+|++++.|+.|++||+.+...........++.++
T Consensus 353 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 430 (435)
T 1p22_A 353 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTY 430 (435)
T ss_dssp ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-------------------
T ss_pred eCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCCCCCccce
Confidence 8 99999999976531 1177888899999999999 6788999999999999999887766444444555555
Q ss_pred EEe
Q 003279 813 AAS 815 (834)
Q Consensus 813 afs 815 (834)
.|.
T Consensus 431 ~~~ 433 (435)
T 1p22_A 431 TYI 433 (435)
T ss_dssp ---
T ss_pred eee
Confidence 554
No 101
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.8e-31 Score=299.25 Aligned_cols=264 Identities=15% Similarity=0.208 Sum_probs=219.3
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-ccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCC---CCce-eee
Q 003279 559 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN---PDYS-LRT 632 (834)
Q Consensus 559 ~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l-~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~s---~~~~-i~~ 632 (834)
.|+|++..+++++ +|+ .+++.+..+ .+|.+.|++++|+| ++.+|++|+.||+|+|||+.+ +... ...
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 3677887777665 487 556888888 89999999999999 999999999999999999876 3211 122
Q ss_pred eccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC---CCceeeEee-------------cCCCeeEEE--EecCCCEE
Q 003279 633 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSCAGVFK-------------CQSGATQMR--FQPRLGRI 694 (834)
Q Consensus 633 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~---s~~~i~~~~-------------~~~~i~~l~--~sp~g~~l 694 (834)
...|...|.+++|+|++. +|++++.||.|++||++ +++....+. ....+.++. +++++..+
T Consensus 107 ~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (437)
T 3gre_A 107 TYDCSSTVTQITMIPNFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLL 185 (437)
T ss_dssp EEECSSCEEEEEECTTSS-EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEE
T ss_pred eccCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEE
Confidence 225999999999999866 67799999999999995 555444333 234466666 55788999
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEeC--CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-cCCCceEE
Q 003279 695 LAAAIENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-CTGNKFHS 770 (834)
Q Consensus 695 l~~s~dg~I~iwDl~t~~~~~~l~~--h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~-~~~~~I~s 770 (834)
++++.|+.|++||+++++++..+.. |...|++++|+|++.+|++++ |+.|++||++++ .++..+. .+...|.+
T Consensus 186 ~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~ 262 (437)
T 3gre_A 186 VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN---VLIRSWSFGDHAPITH 262 (437)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT---EEEEEEBCTTCEEEEE
T ss_pred EEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc---cEEEEEecCCCCceEE
Confidence 9999999999999999999999988 889999999999999999999 999999999987 7777765 67778999
Q ss_pred EEEeC----CCCEEEEEEcCCeEEEEECCCCeEE-Eecc--------------------------CCCCeEEEEEeCCCC
Q 003279 771 CVFHP----TFPSLLVIGCYETLELWNMTENKTL-TLSA--------------------------HDKLVSSLAASTVNG 819 (834)
Q Consensus 771 vafsp----dg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~--------------------------h~~~V~~lafspdg~ 819 (834)
++|+| ++.+|++++.|+.|++||+.+++.+ .+.+ |...|++++|+ +++
T Consensus 263 ~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~ 341 (437)
T 3gre_A 263 VEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK 341 (437)
T ss_dssp EEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE
T ss_pred EEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce
Confidence 96664 5779999999999999999988866 2222 66779999999 789
Q ss_pred EEEEEecCCcEEEeC
Q 003279 820 MVASASHDKCVKIWK 834 (834)
Q Consensus 820 ~LaSgs~DG~I~IWd 834 (834)
+|++|+.||.|+|||
T Consensus 342 ~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 342 ILLTDEATSSIVMFS 356 (437)
T ss_dssp EEEEEGGGTEEEEEE
T ss_pred EEEecCCCCeEEEEE
Confidence 999999999999996
No 102
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=5.9e-30 Score=283.30 Aligned_cols=274 Identities=14% Similarity=0.159 Sum_probs=216.4
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEec
Q 003279 545 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDT 623 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl 623 (834)
+..+.+|.+.|+|++|+|||++||+|+.++ ++|||+++++.......+ .+..+++.++++.+ ++++.|++|+|||+
T Consensus 12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd~ 88 (355)
T 3vu4_A 12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIWDD 88 (355)
T ss_dssp -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence 445678999999999999999999998765 789999988776554332 58889999988877 56778899999999
Q ss_pred CCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC-ceeeEeecCCCeeEEEEecCCCEEEE--EEcC
Q 003279 624 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILA--AAIE 700 (834)
Q Consensus 624 ~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~-~~i~~~~~~~~i~~l~~sp~g~~ll~--~s~d 700 (834)
.+++. +..+. |...|.+++|+++ .++++. |+.|++||+.++ +.+..+.. ....+++++ ..+++ ++.+
T Consensus 89 ~~~~~-~~~~~-~~~~v~~v~~~~~---~~~~~~-~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~ 158 (355)
T 3vu4_A 89 VKKQD-VSRIK-VDAPVKDLFLSRE---FIVVSY-GDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFNL 158 (355)
T ss_dssp TTTEE-EEEEE-CSSCEEEEEECSS---EEEEEE-TTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSCT
T ss_pred CCCcE-EEEEE-CCCceEEEEEcCC---EEEEEE-cCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCcC
Confidence 98654 55554 6779999999976 233343 789999999988 77666665 444566676 56666 4678
Q ss_pred CeEEEEECCCCe----------------EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCe-EEEEEcCCCCCceeEEEee
Q 003279 701 NYISILDVETQV----------------CRLKLQGHKNQVHSVCWNTSGEYLASVS-DEL-VRVWSIGSGSKGECIHELS 762 (834)
Q Consensus 701 g~I~iwDl~t~~----------------~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~-I~IwDl~s~~~~~~i~~~~ 762 (834)
|.|++||++++. ++..+.+|...|++++|+|+|.+|++++ |++ |+|||++++ .++..+.
T Consensus 159 g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~---~~~~~~~ 235 (355)
T 3vu4_A 159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG---VLVREFR 235 (355)
T ss_dssp TCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC---CEEEEEE
T ss_pred cEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEE
Confidence 999999999865 2678889999999999999999999999 998 999999988 6778887
Q ss_pred -c-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE---Ee--------------------c-cCCCCeEEEEEeC
Q 003279 763 -C-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---TL--------------------S-AHDKLVSSLAAST 816 (834)
Q Consensus 763 -~-~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~---~l--------------------~-~h~~~V~~lafsp 816 (834)
+ |...|.+++|+|++.+|++++.|+.|++||+..+... .+ . .+......++|++
T Consensus 236 ~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 315 (355)
T 3vu4_A 236 RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWIS 315 (355)
T ss_dssp CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESS
T ss_pred cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeC
Confidence 4 8999999999999999999999999999999765321 10 0 1122347799999
Q ss_pred CCCEEEEEecCCcEEEeC
Q 003279 817 VNGMVASASHDKCVKIWK 834 (834)
Q Consensus 817 dg~~LaSgs~DG~I~IWd 834 (834)
++++|++++.||.+++|+
T Consensus 316 d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 316 ESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp SSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEE
Confidence 999999999999999985
No 103
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-29 Score=287.50 Aligned_cols=272 Identities=16% Similarity=0.179 Sum_probs=222.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe---EEEEecc-------------------------------------
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEE------------------------------------- 592 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~---~~~~l~~------------------------------------- 592 (834)
.+|.|++|++||++|+++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 468999999999977666 47899999999988 5555543
Q ss_pred -----------------CCCCeEEEEECCCCCEE-EEEeCCCeEEEEecC--CCCceeeeec--cCCCCeEEEEEccCCC
Q 003279 593 -----------------HTQWITDVRFSPSLSRL-ATSSADRTVRVWDTE--NPDYSLRTFT--GHSTTVMSLDFHPSKE 650 (834)
Q Consensus 593 -----------------h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl~--s~~~~i~~~~--~h~~~V~sl~fspdg~ 650 (834)
|.+.|++++|+|++++| ++++.||.|+|||+. ++.. +..+. .|...|.+++|+|++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV-LKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC-EEEEEEEECSSCEEEEEECTTSS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce-eeeeecccCCCCceEEEEcCCCC
Confidence 33479999999999996 899999999999998 5543 55554 5778999999999976
Q ss_pred cEEEEEeCCCcEEEEECCCCceee----Eee-cCCCeeEEEEecC---CCEEEEEEcCCeEEEEECCCCeEEEE-EeCCC
Q 003279 651 DLLCSCDNNSEIRYWSINNGSCAG----VFK-CQSGATQMRFQPR---LGRILAAAIENYISILDVETQVCRLK-LQGHK 721 (834)
Q Consensus 651 ~llasgs~Dg~I~lwDl~s~~~i~----~~~-~~~~i~~l~~sp~---g~~ll~~s~dg~I~iwDl~t~~~~~~-l~~h~ 721 (834)
+|++++.+|.|++|++.++.... .+. +...|.+++|+|+ +.+|++++.|+.|++||++++.++.. +.+|.
T Consensus 163 -~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~ 241 (450)
T 2vdu_B 163 -TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK 241 (450)
T ss_dssp -EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS
T ss_pred -EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC
Confidence 66688889999999998877553 333 5678999999999 88999999999999999999987777 55899
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-------------------------cCCCceEEEEEeC
Q 003279 722 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-------------------------CTGNKFHSCVFHP 775 (834)
Q Consensus 722 ~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~-------------------------~~~~~I~svafsp 775 (834)
..|.+++|+ ++.+|++++ |+.|+|||+.++ .++..+. .....|..++|+|
T Consensus 242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG---KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK 317 (450)
T ss_dssp SCEEEEEEC-STTEEEEEESSSEEEEEETTTC---CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred CceEEEEEC-CCCEEEEEeCCCeEEEEECCCC---cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence 999999999 999999999 999999999988 4455444 2245789999999
Q ss_pred CCCEEEEEE-cCCeEEEEEC--CCC---eEE-EeccCCCCeEEEEEeCCCCEEEEEec-------CCcEEEe
Q 003279 776 TFPSLLVIG-CYETLELWNM--TEN---KTL-TLSAHDKLVSSLAASTVNGMVASASH-------DKCVKIW 833 (834)
Q Consensus 776 dg~~L~sgs-~dg~I~Iwdl--~~~---~~~-~l~~h~~~V~~lafspdg~~LaSgs~-------DG~I~IW 833 (834)
++++|++++ .++.|+||++ .++ +.+ .+..| ..|.+++|+|++ ++++++. +..|.||
T Consensus 318 ~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 318 NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEE
T ss_pred CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEE
Confidence 999999999 8999999999 554 444 45566 889999999954 4544432 4557777
No 104
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=2.6e-30 Score=289.80 Aligned_cols=277 Identities=16% Similarity=0.197 Sum_probs=226.5
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~IWd~~ 582 (834)
.++++++.|+.|.+|....... ....+..+.+|.+.|++++|+| ++++||+|+.||.|+|||+.
T Consensus 48 ~~~~~~~~~g~i~v~~~~~~~~---------------~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 48 ALICEASGGGAFLVLPLGKTGR---------------VDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP 112 (402)
T ss_dssp EEEBCCSSSCCEEEEETTCCEE---------------CCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC
T ss_pred EEEEEEcCCCEEEEEECccCCC---------------CCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc
Confidence 3556788999999996543211 1122445779999999999999 99999999999999999999
Q ss_pred CC-------eEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEecCCCCceeeee--ccCCCCeEEEEEccCCCcE
Q 003279 583 SF-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDL 652 (834)
Q Consensus 583 t~-------~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~s~~~~i~~~--~~h~~~V~sl~fspdg~~l 652 (834)
++ +.+..+.+|...|.+++|+|++ .+|++++.|+.|++||+.++.. +..+ ..|...|.+++|+|++. +
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~ 190 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA-VLTLGPDVHPDTIYSVDWSRDGA-L 190 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE-EEEECTTTCCSCEEEEEECTTSS-C
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc-cEEEecCCCCCceEEEEECCCCC-E
Confidence 87 5678889999999999999998 6999999999999999998654 6666 78999999999999876 5
Q ss_pred EEEEeCCCcEEEEECCCCceeeEe-ecCC--CeeEEEEecCCCEEEEE---EcCCeEEEEECCCCeE-EEEE-eCCCCCE
Q 003279 653 LCSCDNNSEIRYWSINNGSCAGVF-KCQS--GATQMRFQPRLGRILAA---AIENYISILDVETQVC-RLKL-QGHKNQV 724 (834)
Q Consensus 653 lasgs~Dg~I~lwDl~s~~~i~~~-~~~~--~i~~l~~sp~g~~ll~~---s~dg~I~iwDl~t~~~-~~~l-~~h~~~I 724 (834)
|++++.|+.|++||+++++.+..+ ..+. .+.++.|+|++.+++++ +.|+.|++||++++.. +... ..|...|
T Consensus 191 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 270 (402)
T 2aq5_A 191 ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGV 270 (402)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSC
T ss_pred EEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCce
Confidence 668889999999999999998887 3333 37999999998888888 6899999999998643 2222 2477889
Q ss_pred EEEEEcCCCCEEEE-Ee-CCeEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 725 HSVCWNTSGEYLAS-VS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 725 ~sl~~spdg~~Las-gs-Dg~I~IwDl~s~~~-~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
.+++|+|++.+|++ ++ |+.|++||+.++.. ...+..+. +...|.+++|+|++.++++ .++.+++|++.+++..
T Consensus 271 ~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 271 LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCE 346 (402)
T ss_dssp EEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEE
T ss_pred eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCcccceEEeccccccee--cceeEEEEEcCCCcEE
Confidence 99999999999865 54 99999999998753 22333333 5688999999999987654 5669999999887654
No 105
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=1.3e-29 Score=281.98 Aligned_cols=287 Identities=11% Similarity=0.124 Sum_probs=218.4
Q ss_pred CceEEEEecCCCCCcccCCCcccCCCceEEeccCCC-------CeEEeecCCCCCCCcccccccccCCCeeeeEEEEecC
Q 003279 478 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDD-------NVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 550 (834)
Q Consensus 478 ~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~-------~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~g 550 (834)
+..++.|++++ ++|++|+.|. .|++|.......... ..........+.+
T Consensus 16 PV~sv~fs~dg---------------~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~---------~~~~~~~~~~l~~ 71 (365)
T 4h5i_A 16 PAYGAKFLNND---------------TLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEK---------EQFHILSEFALED 71 (365)
T ss_dssp CEEEEEEEETT---------------EEEEEEECCSSSSSCCEEEEEEEECTTSSSHH---------HHEEEEEEEECCT
T ss_pred CEEEEEEeCCC---------------cEEEEECCCccccCCCCEEEEEEEcCCCccee---------eeeeeeeEEEccC
Confidence 45567777765 6888887654 388886544322100 0011122345789
Q ss_pred CCCCeEEEEEcCCCCEEEEEe-----------CCCcEEEEeCCCCeEE----EEe-----ccCCCCeEEEEECCCCCEEE
Q 003279 551 STSKVESCHFSPDGKLLATGG-----------HDKKAVLWCTESFTVK----STL-----EEHTQWITDVRFSPSLSRLA 610 (834)
Q Consensus 551 H~~~V~sl~fSpdg~~Lasgs-----------~Dg~I~IWd~~t~~~~----~~l-----~~h~~~I~~l~fspdg~~La 610 (834)
|.+.|.+++++ ++.+++|+ .|+.|++|++.+.... ... ..+...+.+++|+|||++|+
T Consensus 72 ~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la 149 (365)
T 4h5i_A 72 NDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAA 149 (365)
T ss_dssp TSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEE
T ss_pred CCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEE
Confidence 99999998876 45677664 4778999987654221 111 23456799999999999987
Q ss_pred EEe--CCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee---cCCCeeEE
Q 003279 611 TSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQM 685 (834)
Q Consensus 611 tgs--~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~---~~~~i~~l 685 (834)
+++ .|++|+|||+.+... +..+ .|...|.+++|+|++. ++++++ ++.+++|+..++..+.... +...+.++
T Consensus 150 ~as~~~d~~i~iwd~~~~~~-~~~~-~~~~~V~~v~fspdg~-~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 225 (365)
T 4h5i_A 150 IASSKVPAIMRIIDPSDLTE-KFEI-ETRGEVKDLHFSTDGK-VVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKI 225 (365)
T ss_dssp EEESCSSCEEEEEETTTTEE-EEEE-ECSSCCCEEEECTTSS-EEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEE
T ss_pred EEECCCCCEEEEeECCCCcE-EEEe-CCCCceEEEEEccCCc-eEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEE
Confidence 655 689999999998654 4444 4778899999999987 566776 5567778877777654432 34458999
Q ss_pred EEecCCCEEEEEEcCC----eEEEEECCCCeE----EEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCce
Q 003279 686 RFQPRLGRILAAAIEN----YISILDVETQVC----RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 756 (834)
Q Consensus 686 ~~sp~g~~ll~~s~dg----~I~iwDl~t~~~----~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~ 756 (834)
+|+|++..+++++.++ .+.+||+..... ...+.+|...|++++|+|+|++|++++ |+.|+|||+.++ +
T Consensus 226 ~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~---~ 302 (365)
T 4h5i_A 226 NFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL---S 302 (365)
T ss_dssp EEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT---E
T ss_pred EEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC---c
Confidence 9999999999999887 688899877643 456778999999999999999999999 999999999987 7
Q ss_pred eEEEe-ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003279 757 CIHEL-SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 797 (834)
Q Consensus 757 ~i~~~-~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~ 797 (834)
++..+ .+|...|++++|+|||++|++++.|++|+|||+..+
T Consensus 303 ~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 303 MSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 77764 689999999999999999999999999999999653
No 106
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-30 Score=286.93 Aligned_cols=265 Identities=9% Similarity=0.025 Sum_probs=213.2
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC---------CCCce
Q 003279 559 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---------NPDYS 629 (834)
Q Consensus 559 ~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~---------s~~~~ 629 (834)
.+.+++.+|++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+.. +....
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 345678899999999999999999999888876 567888999988 9999999999999766 33322
Q ss_pred eeeeccCCCCeEEEEEcc--CCCcEEEEEeCCCcEEEEECCCCceeeEee--cCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003279 630 LRTFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISI 705 (834)
Q Consensus 630 i~~~~~h~~~V~sl~fsp--dg~~llasgs~Dg~I~lwDl~s~~~i~~~~--~~~~i~~l~~sp~g~~ll~~s~dg~I~i 705 (834)
.....+|...|.+++|+| ++. ++++++.||.|++||+++++++..+. +...+.+++|+|++.+|++|+.|+.|++
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i 196 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV 196 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 233346778999999999 865 67799999999999999999876653 3456999999999999999999999999
Q ss_pred EECCCCeEE-EEEeC-CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCce--EEEEEeCCCCEEE
Q 003279 706 LDVETQVCR-LKLQG-HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF--HSCVFHPTFPSLL 781 (834)
Q Consensus 706 wDl~t~~~~-~~l~~-h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I--~svafspdg~~L~ 781 (834)
||+++++.+ ..+.. |...|++++|+|++.+|++++|+.|++||+++......+..+..+...+ .+++|+|++.+|+
T Consensus 197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 276 (343)
T 3lrv_A 197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMI 276 (343)
T ss_dssp EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEE
T ss_pred EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEE
Confidence 999999877 77887 9999999999999999999997799999999875433333332233333 4699999999999
Q ss_pred EEEc-CCeEEEEECCCCeEE-EeccCCCCeEEEEEeC---CCCEEEEEecCCcEEEe
Q 003279 782 VIGC-YETLELWNMTENKTL-TLSAHDKLVSSLAAST---VNGMVASASHDKCVKIW 833 (834)
Q Consensus 782 sgs~-dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafsp---dg~~LaSgs~DG~I~IW 833 (834)
+++. |+.|++|++.+.... .. .++..++|.+ +...|++++.||.+.++
T Consensus 277 ~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 277 AYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp EEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred EecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEE
Confidence 9998 999999999665432 22 5677788888 77888888888888775
No 107
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=1.9e-29 Score=286.34 Aligned_cols=245 Identities=18% Similarity=0.315 Sum_probs=210.6
Q ss_pred EEeccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCC---------CceeeeeccCCCCeEEEEEccCCCcEEEEEe
Q 003279 588 STLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENP---------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 657 (834)
Q Consensus 588 ~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~s~---------~~~i~~~~~h~~~V~sl~fspdg~~llasgs 657 (834)
.....|.+.|++++|+|+ +.+|++++.||.|++||+... ...+..+.+|...|++++|+|++..+|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 344579999999999997 789999999999999999862 2346778899999999999999887888999
Q ss_pred CCCcEEEEECCCCce-------eeEe-ecCCCeeEEEEec-CCCEEEEEEcCCeEEEEECCCC---eEEEEEeCCCCCEE
Q 003279 658 NNSEIRYWSINNGSC-------AGVF-KCQSGATQMRFQP-RLGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVH 725 (834)
Q Consensus 658 ~Dg~I~lwDl~s~~~-------i~~~-~~~~~i~~l~~sp-~g~~ll~~s~dg~I~iwDl~t~---~~~~~l~~h~~~I~ 725 (834)
.||.|++||+..+.. ...+ .+...|.+++|+| ++..|++++.|+.|++||++++ ..+..+..|...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987432 2233 3456799999999 6778889999999999999987 57777888999999
Q ss_pred EEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCC------
Q 003279 726 SVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTE------ 796 (834)
Q Consensus 726 sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~-~L~sgs~dg~I~Iwdl~~------ 796 (834)
+++|+|++. +|++++ |+.|++||+++.. ..+..+..|...|.+++|+|++. +|++++.|+.|+|||+..
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 359 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence 999999987 677887 9999999999743 56778888999999999999995 588899999999999987
Q ss_pred ---------CeEEEeccCCCCeEEEEEeCCCC-EEEEEecCCcEEEeC
Q 003279 797 ---------NKTLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 834 (834)
Q Consensus 797 ---------~~~~~l~~h~~~V~~lafspdg~-~LaSgs~DG~I~IWd 834 (834)
.......+|...|.+++|+|++. +|++++.||.|+||+
T Consensus 360 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 360 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp HHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred ccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 22336678999999999999999 999999999999996
No 108
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=3.9e-29 Score=271.64 Aligned_cols=273 Identities=13% Similarity=0.110 Sum_probs=229.7
Q ss_pred CceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEE
Q 003279 478 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 557 (834)
Q Consensus 478 ~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~s 557 (834)
....+.|++++ .++++|+.|+.|++|...... .......+.+|...|++
T Consensus 13 ~v~~~~~s~~~---------------~~l~~~~~d~~v~iw~~~~~~----------------~~~~~~~~~~~~~~v~~ 61 (342)
T 1yfq_A 13 YISDIKIIPSK---------------SLLLITSWDGSLTVYKFDIQA----------------KNVDLLQSLRYKHPLLC 61 (342)
T ss_dssp CEEEEEEEGGG---------------TEEEEEETTSEEEEEEEETTT----------------TEEEEEEEEECSSCEEE
T ss_pred cEEEEEEcCCC---------------CEEEEEcCCCeEEEEEeCCCC----------------ccccceeeeecCCceEE
Confidence 45666777654 688999999999999654321 11223445589999999
Q ss_pred EEEcCCCC-EEEEEeCCCcEEEEeC-CCCeEEEEecc--CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC--------
Q 003279 558 CHFSPDGK-LLATGGHDKKAVLWCT-ESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-------- 625 (834)
Q Consensus 558 l~fSpdg~-~Lasgs~Dg~I~IWd~-~t~~~~~~l~~--h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s-------- 625 (834)
++|+|+++ +|++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| +.+|++++.|+.|++||+.+
T Consensus 62 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 139 (342)
T 1yfq_A 62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAV 139 (342)
T ss_dssp EEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEE
T ss_pred EEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccc
Confidence 99999999 9999999999999999 87755 67788 999999999999 99999999999999999986
Q ss_pred -CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-Ccee---eEeecCCCeeEEEEec-CCCEEEEEEc
Q 003279 626 -PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCA---GVFKCQSGATQMRFQP-RLGRILAAAI 699 (834)
Q Consensus 626 -~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s-~~~i---~~~~~~~~i~~l~~sp-~g~~ll~~s~ 699 (834)
... +..+. |...|.+++|++++ +++++.|+.|++||+++ +... ....+...+.+++|+| ++..+++++.
T Consensus 140 ~~~~-~~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~ 214 (342)
T 1yfq_A 140 KNLN-SNNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI 214 (342)
T ss_dssp EESC-SSSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET
T ss_pred cCCe-eeEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec
Confidence 432 44444 88999999999875 77889999999999998 5432 2233467899999999 9999999999
Q ss_pred CCeEEEEECCCC------eEEEEEeCCCC---------CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec
Q 003279 700 ENYISILDVETQ------VCRLKLQGHKN---------QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 763 (834)
Q Consensus 700 dg~I~iwDl~t~------~~~~~l~~h~~---------~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~ 763 (834)
||.|++||++.. .....+..|.. .|.+++|+|++.+|++++ |+.|++||+.++ ..+..+..
T Consensus 215 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~ 291 (342)
T 1yfq_A 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR---KKIKNFAK 291 (342)
T ss_dssp TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT---EEEEECCC
T ss_pred CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH---hHhhhhhc
Confidence 999999999876 77778887765 999999999999999998 999999999987 77888888
Q ss_pred C-CCceEEEEEeCCCCEEEEEEcCCe-EEEEE
Q 003279 764 T-GNKFHSCVFHPTFPSLLVIGCYET-LELWN 793 (834)
Q Consensus 764 ~-~~~I~svafspdg~~L~sgs~dg~-I~Iwd 793 (834)
| ...|.+++ |++.+|++++.|+. .+.|.
T Consensus 292 ~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 292 FNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred ccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 8 99999999 99999999999998 54444
No 109
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=6.4e-28 Score=268.01 Aligned_cols=275 Identities=14% Similarity=0.153 Sum_probs=226.6
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEeCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE 582 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~L-asgs~Dg~I~IWd~~ 582 (834)
.++++++.|+.|++|..... ..+..+.+|. .+.+++|+|+|++| ++++.|+.|++||+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~-------------------~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN-------------------KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT-------------------EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCC-------------------eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 46788999999999965332 2334555665 49999999999987 566789999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCc
Q 003279 583 SFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 661 (834)
Q Consensus 583 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 661 (834)
+++.+..+..+. .|.+++|+|++++|++++ .++.|++||+.+++. +..+. +...+.+++|+|+++.++++++.++.
T Consensus 63 ~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~ 139 (391)
T 1l0q_A 63 TNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVK-TGKSPLGLALSPDGKKLYVTNNGDKT 139 (391)
T ss_dssp TTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSSEEEEEECTTSSEEEEEETTTTE
T ss_pred CCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeE-EEEEe-CCCCcceEEECCCCCEEEEEeCCCCE
Confidence 999998887665 899999999999886554 679999999998654 44444 44578999999999888789999999
Q ss_pred EEEEECCCCceeeEeecCCCeeEEEEecCCCEEE-EEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 003279 662 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL-AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 740 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll-~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs 740 (834)
|++||+.+++.+..+..+..+.+++|+|++++++ +++.++.|++||+++++.+..+. +...+.+++|+|++++|++++
T Consensus 140 v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~ 218 (391)
T 1l0q_A 140 VSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTN 218 (391)
T ss_dssp EEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEE
T ss_pred EEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEe
Confidence 9999999999999998888899999999999885 55567999999999998887776 566899999999999888775
Q ss_pred ----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE-EEEcCCeEEEEECCCCeEE-EeccCC
Q 003279 741 ----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL-VIGCYETLELWNMTENKTL-TLSAHD 806 (834)
Q Consensus 741 ----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~-sgs~dg~I~Iwdl~~~~~~-~l~~h~ 806 (834)
++.|++||+.++ +.+..+..+. .+.+++|+|++++|+ +++.|+.|++||+.+++.+ .+..|.
T Consensus 219 ~~~~~~~v~~~d~~~~---~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~ 286 (391)
T 1l0q_A 219 VDKYFNTVSMIDTGTN---KITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGK 286 (391)
T ss_dssp ECSSCCEEEEEETTTT---EEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred cCcCCCcEEEEECCCC---eEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCc
Confidence 679999999887 6666666544 578999999999885 5567889999999999877 343443
No 110
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.1e-31 Score=305.21 Aligned_cols=256 Identities=9% Similarity=0.054 Sum_probs=199.4
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEE----EEeccCCCCeEEEEECCC------CCEEEEEeCCCeEEEEecCCCCc--
Q 003279 561 SPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPS------LSRLATSSADRTVRVWDTENPDY-- 628 (834)
Q Consensus 561 Spdg~~Lasgs~Dg~I~IWd~~t~~~~----~~l~~h~~~I~~l~fspd------g~~Latgs~Dg~I~IWDl~s~~~-- 628 (834)
+|++++|++++.|++|+|||+.+++.. .++.+|.+.|.+++|+|+ +.+||+++.||+|+|||+..+..
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 344455566778899999999876542 456678899999999996 57999999999999999986532
Q ss_pred --------eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc-eeeEee-cCCCeeEE--EEecCC-CEEE
Q 003279 629 --------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQM--RFQPRL-GRIL 695 (834)
Q Consensus 629 --------~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~-~i~~~~-~~~~i~~l--~~sp~g-~~ll 695 (834)
+...+.+|...|++++|++++ .|++|+.||+|++||++++. +...+. +...|.++ .|++++ ..|+
T Consensus 250 ~~~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~la 327 (524)
T 2j04_B 250 HVFKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVS 327 (524)
T ss_dssp SEEECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEE
T ss_pred ccceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEE
Confidence 124677899999999999863 68899999999999999764 334444 46779998 567777 7899
Q ss_pred EEEcCCeEEEEECCCCeEEEEEeCCCC--CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEE
Q 003279 696 AAAIENYISILDVETQVCRLKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 772 (834)
Q Consensus 696 ~~s~dg~I~iwDl~t~~~~~~l~~h~~--~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sva 772 (834)
+++.|++|+|||++++++...+.+|.. .|.+++|+|++..|++++ |++|++||++++ .++..+..|...|.+++
T Consensus 328 S~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~---~~~~~l~gH~~~V~sva 404 (524)
T 2j04_B 328 TVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA---FAVHPLVSRETTITAIG 404 (524)
T ss_dssp EEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT---TCCEEEEECSSCEEEEE
T ss_pred EeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc---ccceeeecCCCceEEEE
Confidence 999999999999998876666666653 588999999999999888 889999999987 56667788999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeEEEec-----cCCCCeEEEEEeCCCCEE
Q 003279 773 FHPTFPSLLVIGCYETLELWNMTENKTLTLS-----AHDKLVSSLAASTVNGMV 821 (834)
Q Consensus 773 fspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~-----~h~~~V~~lafspdg~~L 821 (834)
|+|++++|++++.|++|++||+..+...... .+...|.+++|+|++..+
T Consensus 405 ~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~ 458 (524)
T 2j04_B 405 VSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKY 458 (524)
T ss_dssp CCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEE
T ss_pred eCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeE
Confidence 9999999999999999999998764211111 112257899999999855
No 111
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=2.9e-28 Score=270.85 Aligned_cols=262 Identities=11% Similarity=0.122 Sum_probs=223.4
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEecCCCCceeeeeccCCCCeEEE
Q 003279 565 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 643 (834)
Q Consensus 565 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl 643 (834)
.++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++. +..+..+. .+.++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-IATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-EEEEECSS-SEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-EEEEECCC-Cccce
Confidence 467888999999999999999999988775 48999999999977 6677899999999987654 55555444 89999
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEE-EEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 003279 644 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI-LAAAIENYISILDVETQVCRLKLQGHKN 722 (834)
Q Consensus 644 ~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~l-l~~s~dg~I~iwDl~t~~~~~~l~~h~~ 722 (834)
+|+|+++.++++++.++.|++||+.+++.+..+..+..+.+++|+|+++.+ ++++.++.|++||+.+++.+..+..+ .
T Consensus 80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~ 158 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R 158 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence 999999988888888899999999999999999888899999999999988 56666899999999999998888765 5
Q ss_pred CEEEEEEcCCCCEEE-EEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE---cCCeEEEEECCCC
Q 003279 723 QVHSVCWNTSGEYLA-SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG---CYETLELWNMTEN 797 (834)
Q Consensus 723 ~I~sl~~spdg~~La-sgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs---~dg~I~Iwdl~~~ 797 (834)
.+.+++|+|++++|+ ++. ++.|++||++++ ..+..+. +...+.+++|+|++.+|++++ .++.|++||+.++
T Consensus 159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEECCCC---eEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 679999999999885 445 889999999887 5555554 456789999999999999988 6889999999999
Q ss_pred eEEEeccCCCCeEEEEEeCCCCEE-EEEecCCcEEEeC
Q 003279 798 KTLTLSAHDKLVSSLAASTVNGMV-ASASHDKCVKIWK 834 (834)
Q Consensus 798 ~~~~l~~h~~~V~~lafspdg~~L-aSgs~DG~I~IWd 834 (834)
+.+........+.+++|+|++++| ++++.|+.|++||
T Consensus 235 ~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d 272 (391)
T 1l0q_A 235 KITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVID 272 (391)
T ss_dssp EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred eEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence 887544444568999999999977 6778899999996
No 112
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.6e-30 Score=295.03 Aligned_cols=262 Identities=10% Similarity=0.089 Sum_probs=212.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCce
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 629 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~ 629 (834)
.-...|.+++|+|||+++|+++.|++|+ |...++ .+.+|...|.+++|+|+| .++.+.+|+.....
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-- 78 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-- 78 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC--
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCce--
Confidence 3456799999999999999999999999 765554 447999999999999998 45555555543211
Q ss_pred eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCC-----CeeEEEEecCCCEEEEEEcCCeEE
Q 003279 630 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-----GATQMRFQPRLGRILAAAIENYIS 704 (834)
Q Consensus 630 i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~-----~i~~l~~sp~g~~ll~~s~dg~I~ 704 (834)
... ..|...|.+++|+|+|. .|++++.||.|++||... ++..+.++. .+.+++|+|+|++|++|+.||.|+
T Consensus 79 ~~~-~~~~~~V~~vawSPdG~-~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 79 LLN-SQPVCYPRVCKPSPIDD-WMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp SST-TSCSCCEEEEEECSSSS-CEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred Eee-cCCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 122 25688999999999987 566899999999999654 555555332 499999999999999999999999
Q ss_pred EEECCCCe-------EEEEE----eCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEe-ecCCCceEEEE
Q 003279 705 ILDVETQV-------CRLKL----QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-SCTGNKFHSCV 772 (834)
Q Consensus 705 iwDl~t~~-------~~~~l----~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~-~~~~~~I~sva 772 (834)
+||+.++. .+.++ .+|..+|.+++|+||| +++++.|+.|++||+..+........+ ..|...|.+++
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva 233 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK 233 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence 99999874 35666 5678899999999999 544444999999999887432234555 36778999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeEEEec-cCCCCeEEEEE--eCCCCEEEEEecCCcEEEeC
Q 003279 773 FHPTFPSLLVIGCYETLELWNMTENKTLTLS-AHDKLVSSLAA--STVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 773 fspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~-~h~~~V~~laf--spdg~~LaSgs~DG~I~IWd 834 (834)
|+ +..|++++ ++.|++||+.+++...+. +|...|.+++| +|++..|++++.||+ ++|.
T Consensus 234 Fs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 234 IV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp EE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred EE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence 99 57788776 699999999999985444 89999999999 999999999999999 8884
No 113
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=3.4e-29 Score=284.22 Aligned_cols=252 Identities=19% Similarity=0.367 Sum_probs=219.2
Q ss_pred EEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCC----------CeEEEEeccCCCCeEEEEECCCCC-EEEEEe
Q 003279 546 QLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLS-RLATSS 613 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpd-g~~Lasgs~Dg~I~IWd~~t----------~~~~~~l~~h~~~I~~l~fspdg~-~Latgs 613 (834)
....+|.+.|++++|+|+ +.+||+++.||.|+|||+.+ ...+..+.+|...|++++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 445689999999999997 78999999999999999986 677888899999999999999988 999999
Q ss_pred CCCeEEEEecCCCCc------eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC---ceeeEee-cCCCee
Q 003279 614 ADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFK-CQSGAT 683 (834)
Q Consensus 614 ~Dg~I~IWDl~s~~~------~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~---~~i~~~~-~~~~i~ 683 (834)
.||.|++||+..... ....+.+|...|.+++|+|++..+|++++.||.|++||++++ +.+..+. +...+.
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987432 135667899999999999977889999999999999999987 4555553 567899
Q ss_pred EEEEecCCC-EEEEEEcCCeEEEEECCC-CeEEEEEeCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCC-----
Q 003279 684 QMRFQPRLG-RILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSK----- 754 (834)
Q Consensus 684 ~l~~sp~g~-~ll~~s~dg~I~iwDl~t-~~~~~~l~~h~~~I~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~----- 754 (834)
+++|+|++. .+++++.||.|++||+++ ..++..+..|...|.+++|+|++. +|++++ |+.|+|||+.....
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 361 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 361 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence 999999887 688999999999999998 567888889999999999999985 677777 99999999987321
Q ss_pred ------ceeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCC
Q 003279 755 ------GECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTEN 797 (834)
Q Consensus 755 ------~~~i~~~~~~~~~I~svafspdg~-~L~sgs~dg~I~Iwdl~~~ 797 (834)
...+..+..|...|.+++|+|+++ +|++++.|+.|+||++...
T Consensus 362 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 362 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 256777788899999999999999 8999999999999998754
No 114
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=2.1e-28 Score=263.75 Aligned_cols=290 Identities=19% Similarity=0.240 Sum_probs=213.3
Q ss_pred CCceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeE
Q 003279 477 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 556 (834)
Q Consensus 477 ~~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~ 556 (834)
....++.|++++ .++++|+.|+.|++|...... ........+.+|...|+
T Consensus 12 ~~v~~~~~~~~~---------------~~l~~~~~dg~i~iw~~~~~~---------------~~~~~~~~~~~~~~~v~ 61 (351)
T 3f3f_A 12 DLVHDVVYDFYG---------------RHVATCSSDQHIKVFKLDKDT---------------SNWELSDSWRAHDSSIV 61 (351)
T ss_dssp SCEEEEEECSSS---------------SEEEEEETTSEEEEEEECSSS---------------CCEEEEEEEECCSSCEE
T ss_pred cceeEEEEcCCC---------------CEEEEeeCCCeEEEEECCCCC---------------CcceecceeccCCCcEE
Confidence 456667776655 689999999999999665321 12345677889999999
Q ss_pred EEEEcC--CCCEEEEEeCCCcEEEEeCCCC---------eEEEEeccCCCCeEEEEECCC--CCEEEEEeCCCeEEEEec
Q 003279 557 SCHFSP--DGKLLATGGHDKKAVLWCTESF---------TVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDT 623 (834)
Q Consensus 557 sl~fSp--dg~~Lasgs~Dg~I~IWd~~t~---------~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~IWDl 623 (834)
+++|+| |+++|++|+.||.|+|||+.++ +.+..+..|...|.+++|+|+ +.+|++++.|+.|++||+
T Consensus 62 ~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~ 141 (351)
T 3f3f_A 62 AIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA 141 (351)
T ss_dssp EEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEEC
T ss_pred EEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecC
Confidence 999999 6999999999999999999887 668888999999999999999 999999999999999999
Q ss_pred CCCCceeeee-------------ccCCCCeEEEEEccC--CCcEEEEEeCCCcEEEEECCCCce--eeEee-cCCCeeEE
Q 003279 624 ENPDYSLRTF-------------TGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSC--AGVFK-CQSGATQM 685 (834)
Q Consensus 624 ~s~~~~i~~~-------------~~h~~~V~sl~fspd--g~~llasgs~Dg~I~lwDl~s~~~--i~~~~-~~~~i~~l 685 (834)
.+... +..+ ..|...|.+++|+|+ ...++++++.|+.+.+|+...++. +..+. +...|.++
T Consensus 142 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 220 (351)
T 3f3f_A 142 LEPSD-LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSI 220 (351)
T ss_dssp SSTTC-TTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEE
T ss_pred CChHH-hccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEE
Confidence 87653 2111 267889999999997 345778899999998888887765 33343 45679999
Q ss_pred EEecCC----CEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-----CCeEEEEEcCCCCCce
Q 003279 686 RFQPRL----GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-----DELVRVWSIGSGSKGE 756 (834)
Q Consensus 686 ~~sp~g----~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-----Dg~I~IwDl~s~~~~~ 756 (834)
+|+|++ .+|++++.|+.|++||++.+........+...+....+++....++.+. ...+.+|+... ..
T Consensus 221 ~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 297 (351)
T 3f3f_A 221 SWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ---VE 297 (351)
T ss_dssp EECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEE---EE
T ss_pred EECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccccc---cc
Confidence 999998 7899999999999999998766555544444555555555555555544 22344444333 37
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 757 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 757 ~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
.+..+..|...|.+++|+|++.+|++++.|+.|++||+.+++.+
T Consensus 298 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 298 LLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp EEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred EEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence 78888899999999999999999999999999999999887544
No 115
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=6.1e-28 Score=263.53 Aligned_cols=288 Identities=16% Similarity=0.225 Sum_probs=232.1
Q ss_pred CCCCceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCC
Q 003279 475 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 554 (834)
Q Consensus 475 ~s~~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~ 554 (834)
......++.|+++.. ...++++|+.|+.|++|...... ......+.+|.+.
T Consensus 38 h~~~v~~~~~~~~~~------------~g~~l~~~~~dg~i~iw~~~~~~-----------------~~~~~~~~~h~~~ 88 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTL------------PGNFLIAGSWANDVRCWEVQDSG-----------------QTIPKAQQMHTGP 88 (368)
T ss_dssp CSSCEEEEEECCTTS------------SSEEEEEEETTSEEEEEEECTTS-----------------CEEEEEEEECSSC
T ss_pred CCCceEEEEEcCCCC------------CceEEEEECCCCcEEEEEcCCCC-----------------ceeEEEeccccCC
Confidence 344667777777631 12688999999999999765421 1123567789999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEE--CCCCCEEEEEeCCCeEEEEecCCCCceeee
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF--SPSLSRLATSSADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~f--spdg~~Latgs~Dg~I~IWDl~s~~~~i~~ 632 (834)
|++++|+|++++|++++.||.|++||+.+++.+. +..|...|.+++| ++++.+|++++.|+.|++||+.++.. +..
T Consensus 89 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~ 166 (368)
T 3mmy_A 89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP-MMV 166 (368)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC-SEE
T ss_pred EEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE-EEE
Confidence 9999999999999999999999999999988776 4579999999999 89999999999999999999998664 556
Q ss_pred eccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee---cCCCeeEEEEecCCCE----EEEEEcCCeEEE
Q 003279 633 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGR----ILAAAIENYISI 705 (834)
Q Consensus 633 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~---~~~~i~~l~~sp~g~~----ll~~s~dg~I~i 705 (834)
+..+ ..+.++.+.++ .+++++.++.+++|+++......... ....+.++.+.++... +++++.|+.|++
T Consensus 167 ~~~~-~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i 242 (368)
T 3mmy_A 167 LQLP-ERCYCADVIYP---MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAI 242 (368)
T ss_dssp EECS-SCEEEEEEETT---EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEE
T ss_pred EecC-CCceEEEecCC---eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEE
Confidence 6655 46777777743 56678889999999998765443322 2345677777766554 999999999999
Q ss_pred EECCCC---eEEEEEeCCCC------------CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003279 706 LDVETQ---VCRLKLQGHKN------------QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 769 (834)
Q Consensus 706 wDl~t~---~~~~~l~~h~~------------~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 769 (834)
||++.. ..+..+..|.. .|++++|+|++.+|++++ |+.|++||+.++ .++..+..|...|.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~ 319 (368)
T 3mmy_A 243 HYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR---TKLKTSEQLDQPIS 319 (368)
T ss_dssp EESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT---EEEEECCCCSSCEE
T ss_pred EecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC---cEEEEecCCCCCce
Confidence 999987 55667777765 799999999999999998 999999999987 78888999999999
Q ss_pred EEEEeCCCCEEEEEEcCCeEE---EEECCCCeEE
Q 003279 770 SCVFHPTFPSLLVIGCYETLE---LWNMTENKTL 800 (834)
Q Consensus 770 svafspdg~~L~sgs~dg~I~---Iwdl~~~~~~ 800 (834)
+++|+|++.+|++++.|+..+ +|+.+....+
T Consensus 320 ~~~~s~~g~~l~~~s~d~~~~~~~~~~~~~~~~i 353 (368)
T 3mmy_A 320 ACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYI 353 (368)
T ss_dssp EEEECTTSSCEEEEECCCSTTCGGGCCTTSCCEE
T ss_pred EEEECCCCCeEEEEecccccccccccCCCcccee
Confidence 999999999999999988444 4444444444
No 116
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.2e-29 Score=306.72 Aligned_cols=252 Identities=20% Similarity=0.313 Sum_probs=214.6
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCeEEEEeccCCCCeEEEEECCC--CCEEEEEeCCCeEEE
Q 003279 545 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRV 620 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~--t~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~I 620 (834)
+.++.+|.+.|++++|+|++++|++|+.||.|+|||+. +++.+..+.+|.+.|++++|+++ +.+|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 35678999999999999999999999999999999998 56778889999999999999988 999999999999999
Q ss_pred EecCCCCc-eeeeeccCCCCeEEEEEccCC-CcEEEEEeCCCcEEEEECCCCcee---eEeecCCCeeEEEEec------
Q 003279 621 WDTENPDY-SLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCA---GVFKCQSGATQMRFQP------ 689 (834)
Q Consensus 621 WDl~s~~~-~i~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~lwDl~s~~~i---~~~~~~~~i~~l~~sp------ 689 (834)
||+.++.. .+..+.+|...|.+++|+|++ ..++++|+.||.|++||++++... ....+...+.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 99998642 467778899999999999982 347779999999999999887332 2233567899999999
Q ss_pred -------CCCEEEEEEcCCeEEEEECCCC----eEEEEEeCCCCCEEEEEEcCC---CCEEEEEe-CCeEEEEEcCCCCC
Q 003279 690 -------RLGRILAAAIENYISILDVETQ----VCRLKLQGHKNQVHSVCWNTS---GEYLASVS-DELVRVWSIGSGSK 754 (834)
Q Consensus 690 -------~g~~ll~~s~dg~I~iwDl~t~----~~~~~l~~h~~~I~sl~~spd---g~~Lasgs-Dg~I~IwDl~s~~~ 754 (834)
++..+++++.||.|++||++++ .....+.+|...|++++|+|+ +.+|++++ |+.|++||+.++..
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~ 241 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 241 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC
Confidence 5899999999999999999876 667788899999999999999 89999999 99999999988632
Q ss_pred c--eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 755 G--ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 755 ~--~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
. ..+.....+...|.+++|+|++.+|++++.||.|++||+..
T Consensus 242 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp CCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred cceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 1 12333445778899999999999999999999999999874
No 117
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-29 Score=291.16 Aligned_cols=245 Identities=10% Similarity=0.116 Sum_probs=205.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCC-----CeEEEEECCCCCEEEEEeCCCeEEEEecC
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-----WITDVRFSPSLSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~-----~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 624 (834)
.|...|.+|+|||||++||+++.||.|+|||.+. ++..+. |.. .|.+++|+|||++||+|+.||+|+|||+.
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 6688999999999999999999999999999654 666677 665 49999999999999999999999999999
Q ss_pred CCCc------eeeee----ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCcee---eEee--cCCCeeEEEEec
Q 003279 625 NPDY------SLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFK--CQSGATQMRFQP 689 (834)
Q Consensus 625 s~~~------~i~~~----~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i---~~~~--~~~~i~~l~~sp 689 (834)
++.. .+..+ .+|...|.+++|+|++ +++++.|+.|++||+..+... ..+. +...|.+++|+
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs- 235 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV- 235 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-
Confidence 8653 34555 6788899999999997 557788999999999887742 3453 34679999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEE--cCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCC
Q 003279 690 RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCW--NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN 766 (834)
Q Consensus 690 ~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~--spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~ 766 (834)
+..+++++ ++.|++||+.++.......+|...|.+++| +|++..|+++. ||+ ++|...
T Consensus 236 -g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d---------------- 296 (588)
T 2j04_A 236 -DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED---------------- 296 (588)
T ss_dssp -TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----------------
T ss_pred -CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----------------
Confidence 57888776 699999999998875545479999999999 99999999999 889 999976
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEec
Q 003279 767 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 826 (834)
Q Consensus 767 ~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~ 826 (834)
.+.++|++..+++. |+++++|+...+....+ .+...|.+++|+|||+++|+++.
T Consensus 297 ---~~~~spd~~l~a~~--d~~v~lW~~~g~~l~~~-~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 297 ---ELHVTADNIIAPYL--EKKFKKWSTIWNEFNNY-ETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ---SEEEECCCSSHHHH--HHHHHHTTTTTTSSSSS-CCEEEEEEEEECTTSSEEEEEEE
T ss_pred ---cEEECCCceEEEEc--CCEEEEEECCCCceeee-ccceEEEEEEECCCCCEEEEEEe
Confidence 15699999866664 89999999876653333 44677999999999999999874
No 118
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=1.1e-28 Score=276.84 Aligned_cols=261 Identities=15% Similarity=0.137 Sum_probs=177.1
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE-----EeccCCCCeEEEEECC--------CCCEEEEEeCC
Q 003279 549 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-----TLEEHTQWITDVRFSP--------SLSRLATSSAD 615 (834)
Q Consensus 549 ~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~-----~l~~h~~~I~~l~fsp--------dg~~Latgs~D 615 (834)
..|...+....+++++.+||+|+.|++|+|||+.++.... .+.+|.+.|++|+|+| |+++||+|+.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 3455556666677788899999999999999999876543 3578999999999997 78999999999
Q ss_pred CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCC-CeeEEEEecCCCEE
Q 003279 616 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRI 694 (834)
Q Consensus 616 g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~-~i~~l~~sp~g~~l 694 (834)
++|+|||+.++.. +..+..|...|.+++|+|++..+|++++.|+.|++||+++++......... .....++
T Consensus 166 ~tv~~Wd~~~~~~-~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~------- 237 (393)
T 4gq1_A 166 CTLIIWRLTDEGP-ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLL------- 237 (393)
T ss_dssp SEEEEEEEETTEE-EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSE-------
T ss_pred CeEEEEECCCCce-eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEE-------
Confidence 9999999987654 566677889999999999988889999999999999999887655443211 1110001
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEc-CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE---
Q 003279 695 LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN-TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH--- 769 (834)
Q Consensus 695 l~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~s-pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~--- 769 (834)
. ++...........+|...|.++.|+ +++..|++++ |+.+++||+..+.. ...+..+...+.
T Consensus 238 -s---------~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~---~~~l~~~~~~~~~~~ 304 (393)
T 4gq1_A 238 -T---------LNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND---YNEISDSTMKLGPKN 304 (393)
T ss_dssp -E---------EESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------C
T ss_pred -e---------cccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC---CceEeeecCccccEE
Confidence 0 1111111122234688899999987 7999999999 99999999987632 222222222222
Q ss_pred ---------------EEEEeC-CC-CEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcE
Q 003279 770 ---------------SCVFHP-TF-PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCV 830 (834)
Q Consensus 770 ---------------svafsp-dg-~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I 830 (834)
.+.|++ .+ .++++++.|+.|+|||+.+++.. ....|...|.+++|+|||++||++++||.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~ 383 (393)
T 4gq1_A 305 LLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVL 383 (393)
T ss_dssp CSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEE
T ss_pred EccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 223333 23 34566677999999999988766 567889999999999999999999988853
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.9e-28 Score=298.36 Aligned_cols=247 Identities=21% Similarity=0.370 Sum_probs=211.3
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC-ceeeeeccCCCCeEEEEEccCC-CcEEEEEeCCCcEEEE
Q 003279 588 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYW 665 (834)
Q Consensus 588 ~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~-~~i~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~lw 665 (834)
..+.+|.+.|++++|+|++++|++|+.||.|+|||+..+. ..+..+.+|...|++++|+++. ..+|++|+.||.|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 4678999999999999999999999999999999998432 3467788999999999999872 3477899999999999
Q ss_pred ECCCCc--eeeEee-cCCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCC--eEEEEEeCCCCCEEEEEEcC-------
Q 003279 666 SINNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNT------- 731 (834)
Q Consensus 666 Dl~s~~--~i~~~~-~~~~i~~l~~sp~--g~~ll~~s~dg~I~iwDl~t~--~~~~~l~~h~~~I~sl~~sp------- 731 (834)
|+.+++ .+..+. +...|.+++|+|+ +..+++++.||.|++||++++ .....+.+|...|.+++|+|
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 999886 444443 5678999999999 999999999999999999887 34556778999999999999
Q ss_pred ------CCCEEEEEe-CCeEEEEEcCCCCCc-eeEEEeecCCCceEEEEEeCC---CCEEEEEEcCCeEEEEECCCCe--
Q 003279 732 ------SGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCTGNKFHSCVFHPT---FPSLLVIGCYETLELWNMTENK-- 798 (834)
Q Consensus 732 ------dg~~Lasgs-Dg~I~IwDl~s~~~~-~~i~~~~~~~~~I~svafspd---g~~L~sgs~dg~I~Iwdl~~~~-- 798 (834)
++.+|++++ ||.|++||++++... .++..+..|...|.+++|+|+ +.+|++++.|+.|++||+.++.
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~ 242 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 242 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc
Confidence 588899988 999999999876432 456678889999999999999 8999999999999999998873
Q ss_pred ----EEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 799 ----TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 799 ----~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
......|...|++++|+|++.+|++|+.||.|+|||
T Consensus 243 ~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (753)
T ss_dssp CBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred ceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence 224456889999999999999999999999999996
No 120
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.4e-26 Score=260.77 Aligned_cols=245 Identities=10% Similarity=0.047 Sum_probs=204.2
Q ss_pred ecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEeCC--CCeEEEEec--cCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 548 IPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE--SFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 548 l~gH~~~V~sl~fSpdg~~L-asgs~Dg~I~IWd~~--t~~~~~~l~--~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
..+|.+.|++++|+|++++| ++|+.||.|+|||+. +++.+..+. .|...|++++|+|++.+|++++.||.|++|+
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~ 177 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID 177 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 45788899999999999996 899999999999999 888888776 6778999999999999999999999999999
Q ss_pred cCCCCc---eeeeeccCCCCeEEEEEccC--CCcEEEEEeCCCcEEEEECCCCceeeEee--cCCCeeEEEEecCCCEEE
Q 003279 623 TENPDY---SLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRIL 695 (834)
Q Consensus 623 l~s~~~---~i~~~~~h~~~V~sl~fspd--g~~llasgs~Dg~I~lwDl~s~~~i~~~~--~~~~i~~l~~sp~g~~ll 695 (834)
+.+... ....+.+|...|.+++|+|+ +..+|++++.|+.|++||+++++++..+. +...|.+++|+ ++.+|+
T Consensus 178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~ 256 (450)
T 2vdu_B 178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLL 256 (450)
T ss_dssp TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEE
T ss_pred cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEE
Confidence 987553 22367789999999999998 23477799999999999999998887643 56789999999 999999
Q ss_pred EEEcCCeEEEEECCCCeEEEEEeC-------------------------CCCCEEEEEEcCCCCEEEEEe--CCeEEEEE
Q 003279 696 AAAIENYISILDVETQVCRLKLQG-------------------------HKNQVHSVCWNTSGEYLASVS--DELVRVWS 748 (834)
Q Consensus 696 ~~s~dg~I~iwDl~t~~~~~~l~~-------------------------h~~~I~sl~~spdg~~Lasgs--Dg~I~IwD 748 (834)
+++.|+.|++||+++++++..+.. ....|.+++|+|++.+|++++ |+.|+||+
T Consensus 257 s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~ 336 (450)
T 2vdu_B 257 SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE 336 (450)
T ss_dssp EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 999999999999999998888763 345799999999999999887 88999999
Q ss_pred c--CCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-------CCeEEEEECC
Q 003279 749 I--GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-------YETLELWNMT 795 (834)
Q Consensus 749 l--~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~-------dg~I~Iwdl~ 795 (834)
+ ..+.....+..+..+ ..|.+++|+|++ .+++++. +..|.+|.+.
T Consensus 337 ~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 337 MSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp ECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEE
T ss_pred eccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEEEE
Confidence 9 554444666777776 889999999954 4444433 3457777653
No 121
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=8.5e-26 Score=264.70 Aligned_cols=307 Identities=10% Similarity=0.061 Sum_probs=247.8
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC-
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCT- 581 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~-gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~- 581 (834)
.++++++.|+.|.+|+.... ..+.++. +|. +.+++|+|||++|++++.|+.|++||+
T Consensus 150 ~~~vs~~~d~~V~v~D~~t~-------------------~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~ 208 (543)
T 1nir_A 150 LFSVTLRDAGQIALVDGDSK-------------------KIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLW 208 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTC-------------------CEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred EEEEEEcCCCeEEEEECCCc-------------------eEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECc
Confidence 57788888999999954322 1234455 443 899999999999999999999999999
Q ss_pred -CCCeEEEEeccCCCCeEEEEECC----CCCEEEEEeC-CCeEEEEecCCCCceeeeecc----------C-CCCeEEEE
Q 003279 582 -ESFTVKSTLEEHTQWITDVRFSP----SLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------H-STTVMSLD 644 (834)
Q Consensus 582 -~t~~~~~~l~~h~~~I~~l~fsp----dg~~Latgs~-Dg~I~IWDl~s~~~~i~~~~~----------h-~~~V~sl~ 644 (834)
.+++.+.++. +...+..++|+| |+++|++++. +++|.|||..+.+. +..+.. | ...+.++.
T Consensus 209 ~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~-~~~i~~~g~~~~~~~~~~~~~v~~i~ 286 (543)
T 1nir_A 209 AKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYHPEPRVAAII 286 (543)
T ss_dssp SSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEESCCCEEEEE
T ss_pred CCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc-ceeecccCcccCccccccCCceEEEE
Confidence 8899998887 455689999999 9999999885 89999999987654 444433 2 23789999
Q ss_pred EccCCCcEEEEEeCCCcEEEEECCCCceee--EeecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeC--
Q 003279 645 FHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG-- 719 (834)
Q Consensus 645 fspdg~~llasgs~Dg~I~lwDl~s~~~i~--~~~~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~-- 719 (834)
++|++..++++...++.|.+||+.+.+.+. .+.....+..+.|+|+++++++++. ++.|.+||+.+++++..+..
T Consensus 287 ~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~ 366 (543)
T 1nir_A 287 ASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK 366 (543)
T ss_dssp ECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred ECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCC
Confidence 999999999999999999999998876554 5555667889999999998887765 78999999999999888874
Q ss_pred --CCCCEEEEEEcCC-CCEEEEEe--CCeEEEEEcCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEEEEE------
Q 003279 720 --HKNQVHSVCWNTS-GEYLASVS--DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVIG------ 784 (834)
Q Consensus 720 --h~~~I~sl~~spd-g~~Lasgs--Dg~I~IwDl~s~~~----~~~i~~~~~~~~~I~svafspdg~~L~sgs------ 784 (834)
|......+ ++|+ +.+++++. |++|.|||+.+... .+++.++..+...+..++|+|++++|++++
T Consensus 367 ~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~ 445 (543)
T 1nir_A 367 TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDA 445 (543)
T ss_dssp SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSH
T ss_pred CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCc
Confidence 55444443 4676 66677764 78999999987321 478999999888889999999999999987
Q ss_pred -cCCeEEEEECCCCeEE-Ee---------ccCCCCeEEEEEeCCCCEEEEEe-----cCCcEEEeC
Q 003279 785 -CYETLELWNMTENKTL-TL---------SAHDKLVSSLAASTVNGMVASAS-----HDKCVKIWK 834 (834)
Q Consensus 785 -~dg~I~Iwdl~~~~~~-~l---------~~h~~~V~~lafspdg~~LaSgs-----~DG~I~IWd 834 (834)
.+++|.+||+.+++.. .. ..+...+..++|+|+|+.|+++. .|+.|.|||
T Consensus 446 ~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 446 RISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp HHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred ccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence 2679999999988755 32 35678899999999999888763 379999997
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=8.4e-27 Score=257.94 Aligned_cols=245 Identities=9% Similarity=0.024 Sum_probs=188.0
Q ss_pred EEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEe
Q 003279 578 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 657 (834)
Q Consensus 578 IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs 657 (834)
||++.+...+..+..|...|++++|+||+++|++|+.++ ++|||+.+... .... +...+..+++.++++.++++++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~ 78 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH-IMSQ--EMRHLSKVRMLHRTNYVAFVTG 78 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE-EEEE--ECSCCCEEEECTTSSEEEEECS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce-eeee--ecCCeEEEEEcCCCCEEEEEEC
Confidence 566777777777889999999999999999999998775 78999986543 2222 2235888889988887777888
Q ss_pred CCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEE
Q 003279 658 NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYL 736 (834)
Q Consensus 658 ~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~-~~~~~l~~h~~~I~sl~~spdg~~L 736 (834)
.|+.|++||+.+++++..+.+...+.++.++++ .+ +.+.++.|++||+.++ +.+..+.. ....+++++ .++
T Consensus 79 ~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~--~~-~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~l 150 (355)
T 3vu4_A 79 VKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE--FI-VVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLL 150 (355)
T ss_dssp STTEEEEEETTTTEEEEEEECSSCEEEEEECSS--EE-EEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEE
T ss_pred CccEEEEEECCCCcEEEEEECCCceEEEEEcCC--EE-EEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEE
Confidence 899999999999999999999899999999876 33 3346899999999987 55555443 444566777 666
Q ss_pred EEE--e-CCeEEEEEcCCCCCc------------e-eEEEeecCCCceEEEEEeCCCCEEEEEEcCCe-EEEEECCCCeE
Q 003279 737 ASV--S-DELVRVWSIGSGSKG------------E-CIHELSCTGNKFHSCVFHPTFPSLLVIGCYET-LELWNMTENKT 799 (834)
Q Consensus 737 asg--s-Dg~I~IwDl~s~~~~------------~-~i~~~~~~~~~I~svafspdg~~L~sgs~dg~-I~Iwdl~~~~~ 799 (834)
+++ + ||.|++||+.++... . ++..+..|...|.+++|+|++.+|++++.|++ |++||+.+++.
T Consensus 151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~ 230 (355)
T 3vu4_A 151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL 230 (355)
T ss_dssp EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 664 4 899999999875310 1 26778899999999999999999999999998 99999999988
Q ss_pred E-Eec-c-CCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 800 L-TLS-A-HDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 800 ~-~l~-~-h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+ .+. + |...|.+++|+|++++|++++.|++|+|||
T Consensus 231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFE 268 (355)
T ss_dssp EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence 7 454 4 999999999999999999999999999996
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=2.3e-25 Score=250.87 Aligned_cols=274 Identities=10% Similarity=0.105 Sum_probs=224.8
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 581 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~ 581 (834)
...++++++.|+.|.+|........ .......+.+|.+.|.+++|+++++++++++.|+.|++||+
T Consensus 133 ~~~~~~~~~~~~~i~~~d~~~g~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~ 198 (433)
T 3bws_A 133 NTRLAIPLLEDEGMDVLDINSGQTV--------------RLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDL 198 (433)
T ss_dssp SSEEEEEBTTSSSEEEEETTTCCEE--------------EECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEET
T ss_pred CCeEEEEeCCCCeEEEEECCCCeEe--------------eecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEEC
Confidence 3467788888889999965432100 00011145689999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEe---
Q 003279 582 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--- 657 (834)
Q Consensus 582 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs--- 657 (834)
++++.+..+..|...+.+++|+|+++++++++ .|+.|++||+.++.. +..+.. ...+.+++|+|++..+++++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~ 276 (433)
T 3bws_A 199 KTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE-IRKTDK-IGLPRGLLLSKDGKELYIAQFSAS 276 (433)
T ss_dssp TTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE-EEECCC-CSEEEEEEECTTSSEEEEEEEESC
T ss_pred CCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE-EEEecC-CCCceEEEEcCCCCEEEEEECCCC
Confidence 99999999999999999999999999886554 799999999987653 444444 456999999999886664443
Q ss_pred ----CCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEE-EcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCC
Q 003279 658 ----NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 732 (834)
Q Consensus 658 ----~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~-s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spd 732 (834)
.|+.|++||+.+++.+..+.+...+.+++|+|+++.++++ +.++.|++||+.+++.+..+. +...+.+++|+|+
T Consensus 277 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~d 355 (433)
T 3bws_A 277 NQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPD 355 (433)
T ss_dssp TTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTT
T ss_pred ccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCC
Confidence 5889999999999988888777789999999999876555 678999999999998888876 7788999999999
Q ss_pred CCEEEEEe-C---------------CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECC
Q 003279 733 GEYLASVS-D---------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 795 (834)
Q Consensus 733 g~~Lasgs-D---------------g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~-dg~I~Iwdl~ 795 (834)
+++|++++ + |.|++||+.++ +.+..+.. ...+.+++|+|++++|++++. |+.|++|++.
T Consensus 356 g~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 356 GKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD---TVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp SSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT---EEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred CCEEEEEecCCCccccccccccccceEEEEEECCCC---cEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 99888876 2 49999999887 56666655 557899999999999998886 9999999986
Q ss_pred C
Q 003279 796 E 796 (834)
Q Consensus 796 ~ 796 (834)
.
T Consensus 432 ~ 432 (433)
T 3bws_A 432 G 432 (433)
T ss_dssp T
T ss_pred C
Confidence 4
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.3e-26 Score=251.11 Aligned_cols=262 Identities=11% Similarity=0.088 Sum_probs=200.9
Q ss_pred CCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 003279 501 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 580 (834)
Q Consensus 501 ~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd 580 (834)
..+.++++|+.|+.|++|....... .. .+. ...|.++.|+|+ |++++.|++|++|+
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~----------------~~---~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~ 101 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKT----------------IT---TIT--TPNPRTGGEHPA---IISRGPCNRLLLLY 101 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSC----------------EE---EEE--EECCCTTCCCCS---EEEECSTTEEEEEE
T ss_pred CCCCEEEEECCCCcEEEEECCCCcE----------------EE---EEe--cCCceeeeeCCc---eEEecCCCeEEEEE
Confidence 3457899999999999997644311 11 111 345778888888 99999999999996
Q ss_pred CC---------CCeEEEEec-cCCCCeEEEEECC--CCCEEEEEeCCCeEEEEecCCCCceeeee-ccCCCCeEEEEEcc
Q 003279 581 TE---------SFTVKSTLE-EHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHP 647 (834)
Q Consensus 581 ~~---------t~~~~~~l~-~h~~~I~~l~fsp--dg~~Latgs~Dg~I~IWDl~s~~~~i~~~-~~h~~~V~sl~fsp 647 (834)
.. +++.+..+. .|.+.|.+++|+| ++++|++++.||+|++||+.++.. +... ..|...|.+++|+|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~p 180 (343)
T 3lrv_A 102 PGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-YIVHSAKSDVEYSSGVLHK 180 (343)
T ss_dssp TTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-EEEECCCSSCCCCEEEECT
T ss_pred ccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-EEEEecCCCCceEEEEECC
Confidence 65 455444443 6778999999999 999999999999999999998765 4444 44566899999999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCcee-eEeec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC---CC
Q 003279 648 SKEDLLCSCDNNSEIRYWSINNGSCA-GVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---HK 721 (834)
Q Consensus 648 dg~~llasgs~Dg~I~lwDl~s~~~i-~~~~~--~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~---h~ 721 (834)
++. +|++|+.||.|++||+++++.+ ..+.. ...|.+++|+|++.+|++++ ++.|++||+++++.+..+.. |.
T Consensus 181 dg~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~ 258 (343)
T 3lrv_A 181 DSL-LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPE 258 (343)
T ss_dssp TSC-EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC--
T ss_pred CCC-EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccccc
Confidence 976 7779999999999999999877 55554 67899999999999999999 55999999998866544432 33
Q ss_pred CCEE--EEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC---CCCEEEEEEcCCeEEEEEC
Q 003279 722 NQVH--SVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP---TFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 722 ~~I~--sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafsp---dg~~L~sgs~dg~I~Iwdl 794 (834)
..+. +++|+|++++|++++ |+.|+||++...... . .. ..+..++|.+ +...+++++.|+.+.++-.
T Consensus 259 ~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~--~-~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 259 FKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN--W-TK----DEESALCLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp ---CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS--E-EE----EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred ccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc--e-Ee----cCceeEecCccccccceeEEEecCCceEEEEe
Confidence 3443 699999999999966 889999999765321 1 11 4567788888 8889999999998888754
Q ss_pred CC
Q 003279 795 TE 796 (834)
Q Consensus 795 ~~ 796 (834)
..
T Consensus 332 ~~ 333 (343)
T 3lrv_A 332 TN 333 (343)
T ss_dssp CS
T ss_pred cC
Confidence 43
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=7.1e-25 Score=237.95 Aligned_cols=285 Identities=13% Similarity=0.115 Sum_probs=197.7
Q ss_pred eeeeEEEEecCCCCC----eEEEEEcCCCC---EEEEEeCCCcEEEEeCCCC---eEEEEeccCCCCeEEEEECCCCCEE
Q 003279 540 FTFTEFQLIPASTSK----VESCHFSPDGK---LLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRL 609 (834)
Q Consensus 540 ~~~~~~~~l~gH~~~----V~sl~fSpdg~---~Lasgs~Dg~I~IWd~~t~---~~~~~l~~h~~~I~~l~fspdg~~L 609 (834)
..+.++..|+...+. |.++-|-.-|- .++++++ ..|++|+..++ +.++++..|+.+|..|.|.||..-|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 101 (356)
T 2w18_A 23 GNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNL 101 (356)
T ss_dssp -CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSC
T ss_pred ceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccce
Confidence 345556666655443 45565654333 5677775 79999999988 8999999999999999999964322
Q ss_pred E-EEeCC---CeEEEEecCCC--C-ceeeeeccCCCCeEEEEEccCCCcEEEEEe--CCCcEEEEEC-CCCceeeEee-c
Q 003279 610 A-TSSAD---RTVRVWDTENP--D-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSI-NNGSCAGVFK-C 678 (834)
Q Consensus 610 a-tgs~D---g~I~IWDl~s~--~-~~i~~~~~h~~~V~sl~fspdg~~llasgs--~Dg~I~lwDl-~s~~~i~~~~-~ 678 (834)
+ ++-.. +.|+..-+... . .......+|...|..+ ++ ..++.+++ .|+.|++|++ .+++.+..+. +
T Consensus 102 ~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~-g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~ 177 (356)
T 2w18_A 102 VCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TK-RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLM 177 (356)
T ss_dssp EEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TT-TEEEEEESSSTTCEEEEEEECTTSCEEEEEEEC
T ss_pred eeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CC-CcEEEecccCCCCcEEEEEECCCCceeeeeccC
Confidence 2 22111 11221111111 0 1112223344445444 44 44665543 5999999999 4477666555 4
Q ss_pred CCCeeEEEEec---CCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC---CCEEEEEEcCCCCEE------------EEEe
Q 003279 679 QSGATQMRFQP---RLGRILAAAIENYISILDVETQVCRLKLQGHK---NQVHSVCWNTSGEYL------------ASVS 740 (834)
Q Consensus 679 ~~~i~~l~~sp---~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~---~~I~sl~~spdg~~L------------asgs 740 (834)
...+..++|++ ++..|++++.|++|+|||+++++++.++.+|. ..+.+++|+|+|.++ ++|+
T Consensus 178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs 257 (356)
T 2w18_A 178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRS 257 (356)
T ss_dssp CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------
T ss_pred CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccC
Confidence 56688889999 77999999999999999999999999998754 367788999999987 4456
Q ss_pred -CCeEEEEEcCCCCCceeEEEe-----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeE-EE
Q 003279 741 -DELVRVWSIGSGSKGECIHEL-----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVS-SL 812 (834)
Q Consensus 741 -Dg~I~IwDl~s~~~~~~i~~~-----~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~-~l 812 (834)
|++|++||..++ +.+..+ .+|...+.+..++ +..+++++.|++|+|||+.+++.+ .+.+|...+. ++
T Consensus 258 ~D~tIklWd~~tg---k~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~v 332 (356)
T 2w18_A 258 PVFQLIVINPKTT---LSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFV 332 (356)
T ss_dssp CCEEEEEEETTTT---EEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEE
T ss_pred CCcEEEEEECCCC---EEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEE
Confidence 889999999987 555443 2444445444444 778999999999999999999988 6667877655 68
Q ss_pred EEeCCCCEEEEEecCCcEEEeC
Q 003279 813 AASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 813 afspdg~~LaSgs~DG~I~IWd 834 (834)
+|+|||++|++|+.|++|+|||
T Consensus 333 afSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 333 KWSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp EECSSSSEEEEECTTSCEEEEE
T ss_pred EECCCCCEEEEEECCCcEEEec
Confidence 9999999999999999999997
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=2.5e-25 Score=251.83 Aligned_cols=265 Identities=13% Similarity=0.078 Sum_probs=217.9
Q ss_pred EEecCCCCCeEEEEEcC--------------CCCEEEEEeCC------CcEEEEeCCCCeEEEEeccCCCCeEEEEECCC
Q 003279 546 QLIPASTSKVESCHFSP--------------DGKLLATGGHD------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 605 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSp--------------dg~~Lasgs~D------g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspd 605 (834)
..+.+|...|.++++++ .+..|++++.+ +.|++||++. .....+..|...|.+++|+||
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spd 189 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPD 189 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTT
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCC
Confidence 45678888888887775 25666666654 7999999974 456677789999999999999
Q ss_pred CCEEEEEeCCC---eEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCc--EEEEECCCCceeeEeecCC
Q 003279 606 LSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQS 680 (834)
Q Consensus 606 g~~Latgs~Dg---~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~--I~lwDl~s~~~i~~~~~~~ 680 (834)
+++|++++.++ .|++||+.+++. ..+..|...+.+++|+|+++.++++++.++. |++||+.+++......+..
T Consensus 190 g~~la~~s~~~~~~~i~~~d~~tg~~--~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~ 267 (415)
T 2hqs_A 190 GSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS 267 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETTTCCE--EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSS
T ss_pred CCEEEEEEecCCCcEEEEEECCCCcE--EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCC
Confidence 99999999885 999999998653 4567788899999999999988878876664 9999999988765555667
Q ss_pred CeeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C---CeEEEEEcCCCC
Q 003279 681 GATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D---ELVRVWSIGSGS 753 (834)
Q Consensus 681 ~i~~l~~sp~g~~ll~~s~d-g--~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-D---g~I~IwDl~s~~ 753 (834)
.+.+++|+|++++|++++.+ + .|++||+.+++. ..+..+...+.+++|+|+|++|++++ + ..|++||+.++.
T Consensus 268 ~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 268 NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 346 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred cccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence 79999999999999988864 4 788889988764 34555777899999999999999887 4 489999999873
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeEEEeccCCCCeEEEEEeCCCC
Q 003279 754 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNG 819 (834)
Q Consensus 754 ~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg---~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~ 819 (834)
. ..+..+. .+.+++|+|+|++|++++.++ .|++||+.++....+..|.+.|.+++|+|...
T Consensus 347 ---~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 347 ---V-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ---E-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCCCC
T ss_pred ---E-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCccccccc
Confidence 3 3344443 889999999999999988877 89999999888888999999999999999653
No 127
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=1.3e-25 Score=251.92 Aligned_cols=235 Identities=11% Similarity=0.111 Sum_probs=178.4
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcC--------CCCEEEEEeCC
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--------DGKLLATGGHD 573 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSp--------dg~~Lasgs~D 573 (834)
...++++|+.|++|++|...... ......+..+.+|.+.|++++|+| |+++||+|+.|
T Consensus 100 ~~~~las~~~d~~v~lw~~~~~~--------------~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 100 YSLFLACVCQDNTVRLIITKNET--------------IITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp EEEEEEEEETTSCEEEEEEETTE--------------EEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred CCCEEEEEeCCCcEEEEECCCCc--------------cceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 44689999999999999654321 112234556889999999999998 89999999999
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEecCCCCcee----------------------
Q 003279 574 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSL---------------------- 630 (834)
Q Consensus 574 g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~s~~~~i---------------------- 630 (834)
++|+|||+.++..+..+..|...|.+++|+|++ .+|++++.|++|++||+.++....
T Consensus 166 ~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~ 245 (393)
T 4gq1_A 166 CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV 245 (393)
T ss_dssp SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence 999999999988888888999999999999987 489999999999999998754311
Q ss_pred --eeeccCCCCeEEEEEc-cCCCcEEEEEeCCCcEEEEECCCCceeeEeec-------------------CCCeeEEEEe
Q 003279 631 --RTFTGHSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------------------QSGATQMRFQ 688 (834)
Q Consensus 631 --~~~~~h~~~V~sl~fs-pdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-------------------~~~i~~l~~s 688 (834)
....+|...|.++.|+ +++. .+++++.|+.|++||+..+.....+.. ........++
T Consensus 246 ~~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH 324 (393)
T ss_dssp ------CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred eeeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence 1224678889999997 5655 677999999999999987765443321 1112223344
Q ss_pred c-CCCE-EEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003279 689 P-RLGR-ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGS 751 (834)
Q Consensus 689 p-~g~~-ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s 751 (834)
+ .++. +++++.|+.|++||+.++.+...+..|...|.+++|+|||++|++++++.+.+|.+..
T Consensus 325 ~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~g 389 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLMG 389 (393)
T ss_dssp SSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEGG
T ss_pred cCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEeC
Confidence 4 3344 4556679999999999998888888899999999999999999999988888887643
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=5.1e-25 Score=249.32 Aligned_cols=273 Identities=15% Similarity=0.172 Sum_probs=219.7
Q ss_pred CCeEEEEEcCCCC-EEEEEe----CCC----cEEEEeC--CCCeEE--EEeccCCCCeEEEEECC--------------C
Q 003279 553 SKVESCHFSPDGK-LLATGG----HDK----KAVLWCT--ESFTVK--STLEEHTQWITDVRFSP--------------S 605 (834)
Q Consensus 553 ~~V~sl~fSpdg~-~Lasgs----~Dg----~I~IWd~--~t~~~~--~~l~~h~~~I~~l~fsp--------------d 605 (834)
..|....|.+.|. ++++|+ .|| .|+|||+ .+++.+ ..+.+|...+..+++++ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 4677888988775 566776 467 8999999 888877 55888988888877764 2
Q ss_pred CCEEEEEeCC------CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC---cEEEEECCCCceeeEe
Q 003279 606 LSRLATSSAD------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS---EIRYWSINNGSCAGVF 676 (834)
Q Consensus 606 g~~Latgs~D------g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg---~I~lwDl~s~~~i~~~ 676 (834)
+..++.++.+ +.|++||+.... ...+..|...|.+++|+|+++.++ +++.++ .|++||+.++++....
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~--~~~l~~~~~~v~~~~~Spdg~~la-~~s~~~~~~~i~~~d~~tg~~~~l~ 219 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYN--QFVVHRSPQPLMSPAWSPDGSKLA-YVTFESGRSALVIQTLANGAVRQVA 219 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCS--CEEEEEESSCEEEEEECTTSSEEE-EEECTTSSCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCC--CEEEeCCCCcceeeEEcCCCCEEE-EEEecCCCcEEEEEECCCCcEEEee
Confidence 5666666654 799999998533 577778999999999999988555 555554 9999999999887666
Q ss_pred ecCCCeeEEEEecCCCEEEEE-EcCC--eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEc
Q 003279 677 KCQSGATQMRFQPRLGRILAA-AIEN--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSI 749 (834)
Q Consensus 677 ~~~~~i~~l~~sp~g~~ll~~-s~dg--~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg--~I~IwDl 749 (834)
.+...+.+++|+|+++.|++. +.++ .|++||+++++. ..+..|...+.+++|+|||++|++++ ++ .|++||+
T Consensus 220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~ 298 (415)
T 2hqs_A 220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI 298 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence 667789999999999988854 4454 599999998876 56677888999999999999988877 33 7888898
Q ss_pred CCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEec
Q 003279 750 GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 826 (834)
Q Consensus 750 ~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d---g~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~ 826 (834)
.++. ...+..+...+.+++|+|+|++|++++.+ ..|++||+.+++...+..|. .+.+++|+|+|++|++++.
T Consensus 299 ~~~~----~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~ 373 (415)
T 2hqs_A 299 NGGA----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSS 373 (415)
T ss_dssp TSSC----CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEE
T ss_pred CCCC----EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEc
Confidence 8763 23444566788999999999999988875 48999999999887776665 8999999999999998887
Q ss_pred CC---cEEEeC
Q 003279 827 DK---CVKIWK 834 (834)
Q Consensus 827 DG---~I~IWd 834 (834)
|+ .|++||
T Consensus 374 ~~~~~~l~~~d 384 (415)
T 2hqs_A 374 QGMGSVLNLVS 384 (415)
T ss_dssp ETTEEEEEEEE
T ss_pred CCCccEEEEEE
Confidence 77 688885
No 129
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=4.8e-23 Score=224.55 Aligned_cols=268 Identities=10% Similarity=0.029 Sum_probs=217.5
Q ss_pred CCeEEEEEcCCCCEEEEEeC-------CCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEE-eCCCeEEEEecC
Q 003279 553 SKVESCHFSPDGKLLATGGH-------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTE 624 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~-------Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~ 624 (834)
..+..++|+|+|++|++++. ++.|.+||..+++.+..+... ..+.+++|++++++++++ ..++.|.+||+.
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 45889999999999888874 568999999999988887643 457899999999966554 557999999999
Q ss_pred CCCceeeeeccCCC---------CeEEEEEccCCCcEEEEE-eCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCE
Q 003279 625 NPDYSLRTFTGHST---------TVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGR 693 (834)
Q Consensus 625 s~~~~i~~~~~h~~---------~V~sl~fspdg~~llasg-s~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ 693 (834)
+++. +..+..+.. .+.+++|+|+++.+++++ +.++.|.+||+.+++.+..+. ....+.+++|+|++++
T Consensus 120 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 120 TGEV-KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TCCE-EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCee-EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 8764 444443332 278899999998777666 358899999999999998887 4556889999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEeC----CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003279 694 ILAAAIENYISILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNK 767 (834)
Q Consensus 694 ll~~s~dg~I~iwDl~t~~~~~~l~~----h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 767 (834)
+++++.++.|.+||+.+++.+..+.. +...+.+++|+|++++++++. ++.|.+||+.++ +.+..+....
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~-- 273 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG---NILAKVAAPE-- 273 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC---CEEEEEECSS--
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEEcCC--
Confidence 99999999999999999988877764 555788999999999887776 589999999887 4555554433
Q ss_pred eEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecC
Q 003279 768 FHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 768 I~svafspdg~~L~sgs-~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~D 827 (834)
...++|+|+++++++++ .++.|.+||+.+++.+........+.+++|+|++++|+++..+
T Consensus 274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 274 SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 25689999999877777 5789999999999988655556688999999999977766654
No 130
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=3.8e-23 Score=224.05 Aligned_cols=274 Identities=7% Similarity=0.129 Sum_probs=206.5
Q ss_pred EEEcCCCCE-EEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC-CCeEEEEecCCCCceeeeecc
Q 003279 558 CHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG 635 (834)
Q Consensus 558 l~fSpdg~~-Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~s~~~~i~~~~~ 635 (834)
..|.+++.+ +++++.++.|.+||.++++.+..+..+...+ +++|+|++++|++++. ++.|++||+.++......+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 345665555 6677789999999999999988887777777 9999999997776666 889999999987653555666
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCC-C--cEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc-CCe-EEEEECCC
Q 003279 636 HSTTVMSLDFHPSKEDLLCSCDNN-S--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENY-ISILDVET 710 (834)
Q Consensus 636 h~~~V~sl~fspdg~~llasgs~D-g--~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg~-I~iwDl~t 710 (834)
+...+.+++|+|+++.++ ++..+ + .|.+||+.+++.+..+.......+++|+|+++++++++. ++. |.+|++..
T Consensus 82 ~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CSSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 666666699999988666 44444 3 899999999999998888888999999999987776655 478 99999875
Q ss_pred CeEE----EEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003279 711 QVCR----LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 784 (834)
Q Consensus 711 ~~~~----~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs 784 (834)
...+ .........+.+++|+|+|++++++. ++.|++||+.++.....+..+.. ...+..++|+|+|++|++++
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~ 239 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLT 239 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEEC
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEE
Confidence 4222 12223456689999999999766655 78999999998744222555554 46678899999999887776
Q ss_pred c-CCeEEEEECCCCeEE---EeccC----CC---CeEEEEEeCCCCEEEEEe-cCCcEEEeC
Q 003279 785 C-YETLELWNMTENKTL---TLSAH----DK---LVSSLAASTVNGMVASAS-HDKCVKIWK 834 (834)
Q Consensus 785 ~-dg~I~Iwdl~~~~~~---~l~~h----~~---~V~~lafspdg~~LaSgs-~DG~I~IWd 834 (834)
. ++.|.+||+.+++.. .+..+ .. .+..++|+||+++|++++ .++.|.|||
T Consensus 240 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 240 ESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT 301 (331)
T ss_dssp SSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence 4 668999999998873 11111 22 235689999999886655 566999996
No 131
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.92 E-value=1.5e-23 Score=227.50 Aligned_cols=254 Identities=10% Similarity=0.049 Sum_probs=178.7
Q ss_pred ccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEe-CC---CcEEEEeCCCC----eEEEEeccCCCCeEEEEECC
Q 003279 533 SAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HD---KKAVLWCTESF----TVKSTLEEHTQWITDVRFSP 604 (834)
Q Consensus 533 ~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs-~D---g~I~IWd~~t~----~~~~~l~~h~~~I~~l~fsp 604 (834)
+|+..++..+..+.++.+|..+|..+.|.||..-|++.. .. +.|+..-+... .....-.+|...|..+ +
T Consensus 67 lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~ 143 (356)
T 2w18_A 67 LWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---T 143 (356)
T ss_dssp EEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---T
T ss_pred EcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---C
Confidence 334445556677788888888888888888544322221 11 11111111111 1111113344444443 4
Q ss_pred CCCEEEEEe--CCCeEEEEecCCCCceeeeeccCCCCeEEEEEcc--CCCcEEEEEeCCCcEEEEECCCCceeeEeecC-
Q 003279 605 SLSRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ- 679 (834)
Q Consensus 605 dg~~Latgs--~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fsp--dg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~- 679 (834)
+++++.+++ .|+.|++|++......+..+..|...+..++|++ +...+|++++.|++|+|||+++++++.++..+
T Consensus 144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~ 223 (356)
T 2w18_A 144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD 223 (356)
T ss_dssp TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC
T ss_pred CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC
Confidence 555555543 5889999999654445677788999999999988 22458889999999999999999999999742
Q ss_pred ---CCeeEEEEecCCCEE------------EEEEcCCeEEEEECCCCeEEEEE-----eCCCCCEEEEEEcCCCCEEEEE
Q 003279 680 ---SGATQMRFQPRLGRI------------LAAAIENYISILDVETQVCRLKL-----QGHKNQVHSVCWNTSGEYLASV 739 (834)
Q Consensus 680 ---~~i~~l~~sp~g~~l------------l~~s~dg~I~iwDl~t~~~~~~l-----~~h~~~I~sl~~spdg~~Lasg 739 (834)
..+.+++|+|++..+ ++++.|++|++||..+++.+..+ .+|...+.+..++ +.+++++
T Consensus 224 ~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASg 301 (356)
T 2w18_A 224 SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAI 301 (356)
T ss_dssp ---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEE
T ss_pred cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEE
Confidence 247788999998876 44667899999999999887765 3676666555554 8889999
Q ss_pred e-CCeEEEEEcCCCCCceeEEEeecCCCceE-EEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 740 S-DELVRVWSIGSGSKGECIHELSCTGNKFH-SCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 740 s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~-svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
+ |++|+|||+.++ +++.++.+|...+. .++|+|+|++|++++.|++|+|||+
T Consensus 302 S~DgTIkIWDl~tG---k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 302 LTSGTIAIWDLLLG---QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ETTSCEEEEETTTC---SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred cCCCcEEEEECCCC---cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 8 999999999998 78889988876655 5899999999999999999999995
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=5.3e-23 Score=222.66 Aligned_cols=267 Identities=9% Similarity=0.146 Sum_probs=197.0
Q ss_pred EEEEEeCCCcEEEEeCC-CC--eEEEEeccCCCCeEEEEECCCCCEEEEEeCC-CeEEEEecC--CCCce-eeeeccCCC
Q 003279 566 LLATGGHDKKAVLWCTE-SF--TVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTE--NPDYS-LRTFTGHST 638 (834)
Q Consensus 566 ~Lasgs~Dg~I~IWd~~-t~--~~~~~l~~h~~~I~~l~fspdg~~Latgs~D-g~I~IWDl~--s~~~~-i~~~~~h~~ 638 (834)
++++++.|+.|++||+. ++ +.+..+ .|...+.+++|+|++++|++++.+ +.|.+|++. ++... +..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 34444779999999985 33 333333 477789999999999999998887 999999998 44432 23344333
Q ss_pred CeEEEEEccCCCcEEEEEeCCCcEEEEECC---CCceeeEeecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCC-CeE
Q 003279 639 TVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVET-QVC 713 (834)
Q Consensus 639 ~V~sl~fspdg~~llasgs~Dg~I~lwDl~---s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s-~dg~I~iwDl~t-~~~ 713 (834)
.+.+++|+|++..+++++..++.|.+||+. ..+.+..+.....+.+++|+|+++++++++ .++.|.+||+.+ ++.
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 789999999998777777778999999994 444555566667799999999999998888 789999999987 644
Q ss_pred EE----EEeC-CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCC-CceeEEEee---cC---CCceEEEEEeCCCCE
Q 003279 714 RL----KLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS-KGECIHELS---CT---GNKFHSCVFHPTFPS 779 (834)
Q Consensus 714 ~~----~l~~-h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~-~~~~i~~~~---~~---~~~I~svafspdg~~ 779 (834)
.. .+.. ....+.+++|+|++++|++++ ++.|.+||+.... .......+. .. ...+..++|+|++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 244 (343)
T 1ri6_A 165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH 244 (343)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE
Confidence 32 2232 345788999999999776655 8899999996421 112222222 11 235678999999998
Q ss_pred EEEEE-cCCeEEEEECC--CC--eEEEeccCCCCeEEEEEeCCCCEEEEEe-cCCcEEEeC
Q 003279 780 LLVIG-CYETLELWNMT--EN--KTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 834 (834)
Q Consensus 780 L~sgs-~dg~I~Iwdl~--~~--~~~~l~~h~~~V~~lafspdg~~LaSgs-~DG~I~IWd 834 (834)
|+++. .++.|++||+. ++ +.+........+.+++|+|++++|++++ .|+.|.||+
T Consensus 245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred EEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEE
Confidence 88666 67899999998 33 3332222233489999999999888887 689999993
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=2.8e-23 Score=243.29 Aligned_cols=267 Identities=9% Similarity=0.062 Sum_probs=214.2
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEec--CCCCceeeeeccCC
Q 003279 560 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT--ENPDYSLRTFTGHS 637 (834)
Q Consensus 560 fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl--~s~~~~i~~~~~h~ 637 (834)
|+|++.++++++.|++|.+||..+++++.++..+.. +.+++|+||+++|++++.|++|++||+ .+.. .+..+. +.
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-~~~~i~-~g 221 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-KVAEIK-IG 221 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-EEEEEE-CC
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-EEEEEe-cC
Confidence 789999999999999999999999999999974433 899999999999999999999999999 6544 355555 45
Q ss_pred CCeEEEEEcc----CCCcEEEEEeCCCcEEEEECCCCceeeEeecC------------CCeeEEEEecCCCEEEEEE-cC
Q 003279 638 TTVMSLDFHP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------SGATQMRFQPRLGRILAAA-IE 700 (834)
Q Consensus 638 ~~V~sl~fsp----dg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~------------~~i~~l~~sp~g~~ll~~s-~d 700 (834)
..+..++|+| +++.+++++..++.|.+||..+++++..+... ..+..+.+++++..++++. .+
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~ 301 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 301 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence 6689999999 98877766667999999999999998887642 2578999999887766555 46
Q ss_pred CeEEEEECCCCeEEE--EEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeec----CCCceEEEE
Q 003279 701 NYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC----TGNKFHSCV 772 (834)
Q Consensus 701 g~I~iwDl~t~~~~~--~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~----~~~~I~sva 772 (834)
+.|.+||+.+.+.+. .+. +...+.+++|+|+|++|++++ +++|.+||+.++ +++..+.. |......+
T Consensus 302 g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg---~l~~~i~~g~~ph~g~g~~~- 376 (543)
T 1nir_A 302 GKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR---RLSALVDVGKTPHPGRGANF- 376 (543)
T ss_dssp TEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSBCCTTCEEE-
T ss_pred CeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCC---eEEEeeccCCCCCCCCCccc-
Confidence 999999998764332 443 566788999999999877665 789999999988 66666654 33333333
Q ss_pred EeCCCCEEEEEE--cCCeEEEEECCC-------CeEE-EeccCCCCeEEEEEeCCCCEEEEEe-------cCCcEEEeC
Q 003279 773 FHPTFPSLLVIG--CYETLELWNMTE-------NKTL-TLSAHDKLVSSLAASTVNGMVASAS-------HDKCVKIWK 834 (834)
Q Consensus 773 fspdg~~L~sgs--~dg~I~Iwdl~~-------~~~~-~l~~h~~~V~~lafspdg~~LaSgs-------~DG~I~IWd 834 (834)
++|++..+++++ .+++|.+||+.+ ++++ .+..|...+..++|+|++++|++++ .+++|.|||
T Consensus 377 ~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d 455 (543)
T 1nir_A 377 VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 455 (543)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence 578744444443 478999999988 7776 6778888899999999999999987 377999997
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=2.2e-23 Score=252.10 Aligned_cols=275 Identities=14% Similarity=0.088 Sum_probs=213.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CC-----cEEEEeCCCCeEEEEeccCCC------------------------CeEEEE
Q 003279 552 TSKVESCHFSPDGKLLATGGH-DK-----KAVLWCTESFTVKSTLEEHTQ------------------------WITDVR 601 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~-Dg-----~I~IWd~~t~~~~~~l~~h~~------------------------~I~~l~ 601 (834)
...|.+++|||||++|++++. |+ .|++||+.+++....+..+.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456999999999999999998 88 899999999988777755433 388999
Q ss_pred ECCCCCEEEEEeCCCeEEEEecCCCC-ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCC
Q 003279 602 FSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 680 (834)
Q Consensus 602 fspdg~~Latgs~Dg~I~IWDl~s~~-~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~ 680 (834)
|+|||++|++++. +.|++||+.++. .....+..|...+.+++|+|||+.++ .++ ++.|++||+.+++.........
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la-~~~-~~~i~~~d~~~g~~~~~~~~~~ 192 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVS-FIR-GRNLWVIDLASGRQMQLTADGS 192 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEE-EEE-TTEEEEEETTTTEEEECCCCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEE-EEe-CCcEEEEecCCCCEEEeccCCc
Confidence 9999999999987 999999998762 02455677888899999999998655 444 5699999999887765544332
Q ss_pred C-----------------eeEEEEecCCCEEEEEEcCC---------------------------------eEEEEECCC
Q 003279 681 G-----------------ATQMRFQPRLGRILAAAIEN---------------------------------YISILDVET 710 (834)
Q Consensus 681 ~-----------------i~~l~~sp~g~~ll~~s~dg---------------------------------~I~iwDl~t 710 (834)
. +..+.|+|++++|++++.|+ .|++||+.+
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 272 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE 272 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence 2 47899999999999998765 889999998
Q ss_pred -CeEEEEEe--CCCCCEEEEEEcCCCCEEEEEe------CCeEEEEEcCCCCCceeEEEeecCCC----ceEEEEEeCCC
Q 003279 711 -QVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS------DELVRVWSIGSGSKGECIHELSCTGN----KFHSCVFHPTF 777 (834)
Q Consensus 711 -~~~~~~l~--~h~~~I~sl~~spdg~~Lasgs------Dg~I~IwDl~s~~~~~~i~~~~~~~~----~I~svafspdg 777 (834)
++...... .|...+.+++| |||++|+++. +..|++||+.++. +...+..+.. .+..++|+|+|
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~spdg 348 (741)
T 2ecf_A 273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ---QRVLAHETSPTWVPLHNSLRFLDDG 348 (741)
T ss_dssp TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC---EEEEEEEECSSCCCCCSCCEECTTS
T ss_pred CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc---eEEEEEcCCCCcCCcCCceEECCCC
Confidence 76554433 37778999999 9999988764 3479999999873 3333333332 34678999999
Q ss_pred CEEEEEEcCCeEEEEEC--CCCeEEEeccCCCCeEEE-EEeCCCCEEEE-EecCC--cEEEeC
Q 003279 778 PSLLVIGCYETLELWNM--TENKTLTLSAHDKLVSSL-AASTVNGMVAS-ASHDK--CVKIWK 834 (834)
Q Consensus 778 ~~L~sgs~dg~I~Iwdl--~~~~~~~l~~h~~~V~~l-afspdg~~LaS-gs~DG--~I~IWd 834 (834)
+++++++.++.++||.+ .++ ...+..|...|..+ .|+|+++.|+. ++.|+ .++||+
T Consensus 349 ~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 349 SILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp CEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred eEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 98888888886666654 444 55777888888887 59999997754 45555 888884
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=6.4e-23 Score=248.04 Aligned_cols=272 Identities=11% Similarity=0.066 Sum_probs=204.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--EEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceee
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 631 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~ 631 (834)
.|.+++|||||++|++++. +.|++||+.++. ....+..|...+.+++|+|||++|++++ ++.|++||+.++.. ..
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~-~~ 186 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ-MQ 186 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE-EE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE-EE
Confidence 4889999999999999986 999999999873 3446777888999999999999999987 46899999987543 33
Q ss_pred eeccCCCC----------------eEEEEEccCCCcEEEEEeCCC--------------------------------cEE
Q 003279 632 TFTGHSTT----------------VMSLDFHPSKEDLLCSCDNNS--------------------------------EIR 663 (834)
Q Consensus 632 ~~~~h~~~----------------V~sl~fspdg~~llasgs~Dg--------------------------------~I~ 663 (834)
....+... +.+++|+|||+.++++...++ .|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 33333322 478999999987775544321 789
Q ss_pred EEECCC-CceeeEee---cCCCeeEEEEecCCCEEEEEEc-----CCeEEEEECCCCeEEEEEeCCCC----CEEEEEEc
Q 003279 664 YWSINN-GSCAGVFK---CQSGATQMRFQPRLGRILAAAI-----ENYISILDVETQVCRLKLQGHKN----QVHSVCWN 730 (834)
Q Consensus 664 lwDl~s-~~~i~~~~---~~~~i~~l~~sp~g~~ll~~s~-----dg~I~iwDl~t~~~~~~l~~h~~----~I~sl~~s 730 (834)
+||+.+ ++...... +...+..++| |++++|++++. +..|++||+.++++...+..+.. .+.+++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999998 77655432 3345889999 99999998775 46799999999987777665543 45689999
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEE-EEeCCCCEEEEEEcCC---eEEEEECCC-Ce-EEEec
Q 003279 731 TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC-VFHPTFPSLLVIGCYE---TLELWNMTE-NK-TLTLS 803 (834)
Q Consensus 731 pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv-afspdg~~L~sgs~dg---~I~Iwdl~~-~~-~~~l~ 803 (834)
|||+++++++ |+.++||.+.... . ...+..+...+..+ .|+|+++.|++.+.++ .++||++.. +. ...+.
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~~--~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~ 422 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSKG--K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS 422 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSSS--C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred CCCeEEEEecCCCccEEEEEcCCC--C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence 9999888877 8878888776321 3 56666777778777 5999999887666544 788998753 43 33444
Q ss_pred cCCCCeEEEEEeCCCCEEEEEecC----CcEEEe
Q 003279 804 AHDKLVSSLAASTVNGMVASASHD----KCVKIW 833 (834)
Q Consensus 804 ~h~~~V~~lafspdg~~LaSgs~D----G~I~IW 833 (834)
. ...+.+++|+||+++|+....+ ..+.+|
T Consensus 423 ~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~ 455 (741)
T 2ecf_A 423 K-APGMHSASFARNASVYVDSWSNNSTPPQIELF 455 (741)
T ss_dssp C-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred c-CCCceEEEECCCCCEEEEEecCCCCCCeEEEE
Confidence 3 6778999999999988766443 345555
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=6.2e-23 Score=216.11 Aligned_cols=253 Identities=11% Similarity=0.090 Sum_probs=195.5
Q ss_pred EEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC-CCceeeeeccC-CCCeEEEEEc
Q 003279 569 TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-PDYSLRTFTGH-STTVMSLDFH 646 (834)
Q Consensus 569 sgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s-~~~~i~~~~~h-~~~V~sl~fs 646 (834)
.++.|+.|++||+.+++... +..|...|.+++|+|++++|++++ ++.|++||+.+ +.. ......+ ...|.+++|+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP-EKVDTGFATICNNDHGIS 93 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC-EECCCTTCCCBCSCCEEC
T ss_pred CCCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc-eEeccccccccccceEEC
Confidence 34678999999999988764 456889999999999999999987 78999999998 654 4444444 4778999999
Q ss_pred cCCCcEEEEEe-CC--CcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEE-EEEcCCeEEEEEC--CCCeEEEEEeCC
Q 003279 647 PSKEDLLCSCD-NN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL-AAAIENYISILDV--ETQVCRLKLQGH 720 (834)
Q Consensus 647 pdg~~llasgs-~D--g~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll-~~s~dg~I~iwDl--~t~~~~~~l~~h 720 (834)
|++..+++++. .+ ..|.+|++.++. ...+.....+..++|+|+++.|+ ++..++.+.+|++ .++. ...+..+
T Consensus 94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~ 171 (297)
T 2ojh_A 94 PDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHG 171 (297)
T ss_dssp TTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCS
T ss_pred CCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccC
Confidence 99886654442 22 455555666555 34444555688999999999887 6677898888885 3443 4556668
Q ss_pred CCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----------C
Q 003279 721 KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----------E 787 (834)
Q Consensus 721 ~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d-----------g 787 (834)
...+.+++|+|++++|++++ ++.++||++.... ..+..+..+...+..++|+|++++|++++.+ .
T Consensus 172 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 249 (297)
T 2ojh_A 172 EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG--SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDV 249 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEE
T ss_pred CCccccceECCCCCEEEEEecCCCCccEEEECCCC--CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCce
Confidence 88999999999999887665 7889999886321 3455666677788999999999999988876 4
Q ss_pred eEEEEECCCCeEE---EeccCCCCeEEEEEeCCCCEEEEEecCC
Q 003279 788 TLELWNMTENKTL---TLSAHDKLVSSLAASTVNGMVASASHDK 828 (834)
Q Consensus 788 ~I~Iwdl~~~~~~---~l~~h~~~V~~lafspdg~~LaSgs~DG 828 (834)
.|++||+.+++.. .+..|...|.+++|+|++++|++++.|.
T Consensus 250 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 250 RVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 6999999988654 3447888999999999999998887654
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=5.7e-22 Score=214.49 Aligned_cols=295 Identities=11% Similarity=0.080 Sum_probs=207.2
Q ss_pred eEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEeCC-
Q 003279 505 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD-KKAVLWCTE- 582 (834)
Q Consensus 505 ~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~D-g~I~IWd~~- 582 (834)
++++++.|+.|.+|...... ....+..+ .|...+.+++|+|+|++|++++.+ +.|.+|++.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~----------------~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~ 69 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEG----------------ALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 69 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTS----------------CEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEeCCCCCeEEEEEECCCC----------------cEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecC
Confidence 34444778899999653211 11122222 466789999999999999998886 999999987
Q ss_pred -CCe--EEEEeccCCCCeEEEEECCCCCEEEEEeC-CCeEEEEecCCCC--ceeeeeccCCCCeEEEEEccCCCcEEEEE
Q 003279 583 -SFT--VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSC 656 (834)
Q Consensus 583 -t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~s~~--~~i~~~~~h~~~V~sl~fspdg~~llasg 656 (834)
+++ .+..+..+. .+.+++|+|++++|++++. ++.|.+||+..+. .....+. ....+.+++|+|+++.+++++
T Consensus 70 ~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~ 147 (343)
T 1ri6_A 70 DDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPA 147 (343)
T ss_dssp TTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEE
T ss_pred CCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEec
Confidence 544 344555444 7899999999998877765 8899999995221 1233333 345689999999998777666
Q ss_pred eCCCcEEEEECCC-CceeeE----ee--cCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCC--CeE--EEEEeC---C-
Q 003279 657 DNNSEIRYWSINN-GSCAGV----FK--CQSGATQMRFQPRLGRILAAA-IENYISILDVET--QVC--RLKLQG---H- 720 (834)
Q Consensus 657 s~Dg~I~lwDl~s-~~~i~~----~~--~~~~i~~l~~sp~g~~ll~~s-~dg~I~iwDl~t--~~~--~~~l~~---h- 720 (834)
..++.|++||+.+ ++.... +. ....+..++|+|+++++++++ .++.|.+||+.. ++. ...+.. .
T Consensus 148 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~ 227 (343)
T 1ri6_A 148 LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENF 227 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTC
T ss_pred CCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccc
Confidence 5899999999987 654322 22 245688899999999887776 689999999953 422 223321 1
Q ss_pred --CCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC-CCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEE--
Q 003279 721 --KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELW-- 792 (834)
Q Consensus 721 --~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~-~~~~~i~~~~~~~~~I~svafspdg~~L~sgs-~dg~I~Iw-- 792 (834)
...+.+++|+|++++|+++. ++.|++||+... .....+..+..+.. +..++|+|++++|++++ .++.|.+|
T Consensus 228 ~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 228 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEI 306 (343)
T ss_dssp CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEE
Confidence 23677899999999887554 889999999832 12245555554444 88999999999999888 57899999
Q ss_pred ECCCCeEE--EeccCCCCeEEEEEeCCCC
Q 003279 793 NMTENKTL--TLSAHDKLVSSLAASTVNG 819 (834)
Q Consensus 793 dl~~~~~~--~l~~h~~~V~~lafspdg~ 819 (834)
|..+++.. ..........+++|.++.+
T Consensus 307 d~~~g~~~~~~~~~~g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 307 VGEQGLLHEKGRYAVGQGPMWVVVNAHEG 335 (343)
T ss_dssp ETTTTEEEEEEEEECSSSCCEEEEEEEC-
T ss_pred cCCCceeeEccccccCCCCeeEEEEcccC
Confidence 55566543 2222345677888887654
No 138
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.91 E-value=2.2e-22 Score=217.23 Aligned_cols=262 Identities=11% Similarity=0.067 Sum_probs=207.4
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEeccCCC--CeEEEEECCCCCEEE-EEeCCCeEEEEecCCCCceeeeec-cC----
Q 003279 565 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQ--WITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFT-GH---- 636 (834)
Q Consensus 565 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~--~I~~l~fspdg~~La-tgs~Dg~I~IWDl~s~~~~i~~~~-~h---- 636 (834)
++|++++.++.|.+||+.+++.+..+..... .+.+++|+|++++++ +++.++.|.+||+.+++. +..+. .+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe-EeeEEcCCcccc
Confidence 4789999999999999999999887753322 488999999998765 555678999999988664 33333 22
Q ss_pred CCCeEEEEEccCCCcEEEEEe-----------CCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003279 637 STTVMSLDFHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 705 (834)
Q Consensus 637 ~~~V~sl~fspdg~~llasgs-----------~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~i 705 (834)
...+.+++|+|+++.++++.. .++.|.+||+.+++.+..+.....+.+++|+|++++++++ ++.|++
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEE
Confidence 226788999999886665531 4799999999999988888877778899999999988888 689999
Q ss_pred EECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC-----------------------eEEEEEcCCCCCceeEEE
Q 003279 706 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE-----------------------LVRVWSIGSGSKGECIHE 760 (834)
Q Consensus 706 wDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg-----------------------~I~IwDl~s~~~~~~i~~ 760 (834)
||+.+++.+..+..+.. ...+.|+|++.+|+... ++ .|.+||+.++... ...
T Consensus 159 ~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~ 235 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA--MRE 235 (337)
T ss_dssp EETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE--EEE
T ss_pred EECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce--Eee
Confidence 99999988877765431 11337899988776554 22 4689999987432 334
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 761 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 761 ~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+..+...+..++|+|++++|+++ ++.|++||+.+++.+........+.+++|+|++++|++++.|+.|++||
T Consensus 236 ~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 45566678899999999998888 6899999999998875555556789999999999999999999999996
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=7.4e-22 Score=213.83 Aligned_cols=292 Identities=11% Similarity=0.082 Sum_probs=212.4
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEeC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCT 581 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~-Dg~I~IWd~ 581 (834)
..++++.+.++.|.+|..... . ....+..+...+ +++|+|||++|++++. ++.|++||+
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~----------------~---~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~ 69 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTL----------------E---ILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIET 69 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTC----------------C---EEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEEC
T ss_pred CEEEEEecCCCeEEEEeCccc----------------c---eeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEEC
Confidence 355677778888999855322 1 123333455556 9999999997777665 889999999
Q ss_pred CCCeE-EEEeccCCCCeEEEEECCCCCEEEEEeCCC---eEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEe
Q 003279 582 ESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 657 (834)
Q Consensus 582 ~t~~~-~~~l~~h~~~I~~l~fspdg~~Latgs~Dg---~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs 657 (834)
.+++. ...+..+..++.+++|+|++++|+++..++ .|.+||+.+++. +..+. +...+.+++|+|+++.+++++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~-~~~~~-~~~~~~~~~~spdg~~l~~~~~ 147 (331)
T 3u4y_A 70 QLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF-ISTIP-IPYDAVGIAISPNGNGLILIDR 147 (331)
T ss_dssp SSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE-EEEEE-CCTTEEEEEECTTSSCEEEEEE
T ss_pred CCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe-EEEEE-CCCCccceEECCCCCEEEEEec
Confidence 99887 777777777766699999999999555553 899999987653 44444 3455799999999988888877
Q ss_pred CCCc-EEEEECCCCcee-----eEeecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeE---EEEEeCCCCCEEEE
Q 003279 658 NNSE-IRYWSINNGSCA-----GVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVC---RLKLQGHKNQVHSV 727 (834)
Q Consensus 658 ~Dg~-I~lwDl~s~~~i-----~~~~~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~---~~~l~~h~~~I~sl 727 (834)
.++. |.+|++.....+ ..+........++|+|+++++++++. ++.|.+||+.+++. +..+.. ...+.++
T Consensus 148 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~ 226 (331)
T 3u4y_A 148 SSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTI 226 (331)
T ss_dssp TTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCE
T ss_pred CCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceE
Confidence 7788 999999764332 22334566899999999998777664 78999999998877 777764 4667899
Q ss_pred EEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecC----CC---ceEEEEEeCCCCEEEEEEcC-CeEEEEECCCC
Q 003279 728 CWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCT----GN---KFHSCVFHPTFPSLLVIGCY-ETLELWNMTEN 797 (834)
Q Consensus 728 ~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~----~~---~I~svafspdg~~L~sgs~d-g~I~Iwdl~~~ 797 (834)
+|+|+|++|+++. ++.|.+||+.++.. ..+..+... .. ....++|+|++++|++++.+ +.|.+||+.+.
T Consensus 227 ~~spdg~~l~v~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 227 VVSRDGSTVYVLTESTVDVFNFNQLSGTL-SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp EECTTSSEEEEECSSEEEEEEEETTTTEE-EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred EECCCCCEEEEEEcCCCEEEEEECCCCce-eeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 9999999877765 67899999988732 113333322 11 22458999999998877765 59999999887
Q ss_pred eEEEeccCCCCeEEEEEeCCC
Q 003279 798 KTLTLSAHDKLVSSLAASTVN 818 (834)
Q Consensus 798 ~~~~l~~h~~~V~~lafspdg 818 (834)
....+...+..-....++|++
T Consensus 306 ~~~~~~~~~~~g~~~~~~~~~ 326 (331)
T 3u4y_A 306 VVGYVAGIEANGGIAICHPDK 326 (331)
T ss_dssp EEEECTTCCCBSCEEECCCC-
T ss_pred cccceecccccCCeEEECCcc
Confidence 765554444433334445543
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=9.2e-23 Score=214.79 Aligned_cols=238 Identities=14% Similarity=0.112 Sum_probs=187.2
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEEEeccC-CCCeEEEEECCCCCEEEEEe--CCCeEEEEe
Q 003279 547 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEH-TQWITDVRFSPSLSRLATSS--ADRTVRVWD 622 (834)
Q Consensus 547 ~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t-~~~~~~l~~h-~~~I~~l~fspdg~~Latgs--~Dg~I~IWD 622 (834)
.+..|...|.+++|+|||++|++++ ++.|++||+.+ ++....+..| ...|.+++|+|++++|++++ .++.+.||.
T Consensus 36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~ 114 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYL 114 (297)
T ss_dssp EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEE
T ss_pred eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEE
Confidence 4456788999999999999999987 78999999999 8877766666 47789999999999999999 335555555
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC--CCCceeeEeecCCCeeEEEEecCCCEEEEEEc-
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNGSCAGVFKCQSGATQMRFQPRLGRILAAAI- 699 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl--~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~- 699 (834)
++........+..+ ..+.+++|+|++..++++++.++.+.+|++ .++.......+...+.+++|+|++..+++++.
T Consensus 115 ~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 193 (297)
T 2ojh_A 115 LPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR 193 (297)
T ss_dssp EETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT
T ss_pred EECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC
Confidence 54322223444433 348999999999988878888998899885 45555444455677999999999998888774
Q ss_pred CCeEEEEECC-CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C-----------CeEEEEEcCCCCCceeEEEeecCCC
Q 003279 700 ENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-----------ELVRVWSIGSGSKGECIHELSCTGN 766 (834)
Q Consensus 700 dg~I~iwDl~-t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-D-----------g~I~IwDl~s~~~~~~i~~~~~~~~ 766 (834)
++.+.+|++. .+..+..+..|...+.+++|+|++++|++++ + ..|++||+.++.. ..+..+..+..
T Consensus 194 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~ 272 (297)
T 2ojh_A 194 TGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV-ETLFDLFGGQG 272 (297)
T ss_dssp TSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC-EEEEEEEESTT
T ss_pred CCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc-eeeeccCCCCc
Confidence 8889999876 4556667777888899999999999998877 4 4699999988643 34555557788
Q ss_pred ceEEEEEeCCCCEEEEEEcCC
Q 003279 767 KFHSCVFHPTFPSLLVIGCYE 787 (834)
Q Consensus 767 ~I~svafspdg~~L~sgs~dg 787 (834)
.+..++|+|++++|++++.+.
T Consensus 273 ~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 273 TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp TSCSCCBCTTSSEEEEEEECC
T ss_pred ccccceECCCCCEEEEEEecc
Confidence 899999999999999887764
No 141
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.90 E-value=2.5e-22 Score=236.45 Aligned_cols=267 Identities=9% Similarity=0.051 Sum_probs=206.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeEEEEeccCC-CCeEEEEECCCCCEEEEEeC---CCeEEEEecCC-
Q 003279 552 TSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSA---DRTVRVWDTEN- 625 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~-Dg~I~IWd~~t~~~~~~l~~h~-~~I~~l~fspdg~~Latgs~---Dg~I~IWDl~s- 625 (834)
..+|++++|+|||++||+++. ||++.||++++++... +..|. ..|.+++|+|| +++++++. +....||.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 457999999999999999887 9999999997766654 44454 68999999999 77777775 45556665543
Q ss_pred -CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcC----
Q 003279 626 -PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE---- 700 (834)
Q Consensus 626 -~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d---- 700 (834)
..... .+..+ ..+...+|+|+++.++++++.++.+.+||+.+++......... .+++|+|+|+.|++++.+
T Consensus 99 ~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~ 174 (582)
T 3o4h_A 99 RPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGR 174 (582)
T ss_dssp STTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTE
T ss_pred CCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCC
Confidence 22222 33222 2345678999988766666666667799999988776666544 889999999999988876
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CC--eEEEEEcCCCCCceeEEEeecCCCceEEEE-----
Q 003279 701 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCV----- 772 (834)
Q Consensus 701 g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~sva----- 772 (834)
+.|++||+.+++.. .+..|...+.+++|+|||++|+++. ++ .|++||+.++ ... .+..+...+..++
T Consensus 175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~---~~~-~~~~~~~~~~~~~~~~~~ 249 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG---SVE-DLELPSKDFSSYRPTAIT 249 (582)
T ss_dssp EEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC---CEE-ECCCSCSHHHHHCCSEEE
T ss_pred eEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC---cEE-EccCCCcChhhhhhcccc
Confidence 78999999988755 6677888999999999999999766 77 8999999887 333 5556666666666
Q ss_pred ---EeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCc---EEEeC
Q 003279 773 ---FHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC---VKIWK 834 (834)
Q Consensus 773 ---fspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~---I~IWd 834 (834)
|+|||..+++++.++.+++|++ ++... .+.+.|.+++|+ +++++++++.+.. |++||
T Consensus 250 ~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 250 WLGYLPDGRLAVVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp EEEECTTSCEEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred ceeEcCCCcEEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 9999988888899999999999 66554 345779999999 9999998887743 66654
No 142
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=6.6e-23 Score=247.03 Aligned_cols=275 Identities=13% Similarity=0.152 Sum_probs=207.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCC---CeEEEEECCCCCEEEEEeCC---------CeEEEE
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSPSLSRLATSSAD---------RTVRVW 621 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~---~I~~l~fspdg~~Latgs~D---------g~I~IW 621 (834)
.+.+++|+|||+++++ +.||+|++||+.+++....+..|.. .|.+++|+|||++|++++.+ +.|++|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678999999998776 7899999999999998888877765 49999999999999999874 788999
Q ss_pred ecCCCCce-eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCe-----------------
Q 003279 622 DTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGA----------------- 682 (834)
Q Consensus 622 Dl~s~~~~-i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i----------------- 682 (834)
|+.++... +.....|...+.+++|+|||+.++++. ++.|++||+.+++....... ...+
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~ 174 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT 174 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEE--CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence 99986641 222234555689999999998666444 47999999998887665543 2222
Q ss_pred -eEEEEecCCCEEEEEEcCC----------------------------------eEEEEECCCCeEEEEEeCC------C
Q 003279 683 -TQMRFQPRLGRILAAAIEN----------------------------------YISILDVETQVCRLKLQGH------K 721 (834)
Q Consensus 683 -~~l~~sp~g~~ll~~s~dg----------------------------------~I~iwDl~t~~~~~~l~~h------~ 721 (834)
.++.|+|+++.|++++.++ .|++||+.+++....+..+ .
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE 254 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence 7899999999999988653 7999999988765566544 5
Q ss_pred CCEEEEEEcCCCCEEEEEe-C----CeEEEEEcCCCCCceeEEEeec-CCCce----EEEEEeCCCCEEEEE--EcCC--
Q 003279 722 NQVHSVCWNTSGEYLASVS-D----ELVRVWSIGSGSKGECIHELSC-TGNKF----HSCVFHPTFPSLLVI--GCYE-- 787 (834)
Q Consensus 722 ~~I~sl~~spdg~~Lasgs-D----g~I~IwDl~s~~~~~~i~~~~~-~~~~I----~svafspdg~~L~sg--s~dg-- 787 (834)
..+.+++|+|||++|++.. . ..|++||+.++. +...+.. +...+ ..++|+|||+.|++. ..++
T Consensus 255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 331 (723)
T 1xfd_A 255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV---CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR 331 (723)
T ss_dssp EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC---EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSS
T ss_pred ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc---ceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCC
Confidence 6789999999999887764 2 379999998873 3333322 22333 378999999987764 3455
Q ss_pred ----eEEEEE-CCCCe---EEEeccCCCCeEE-EEEeCCCCEEEEEecC---CcEEEeC
Q 003279 788 ----TLELWN-MTENK---TLTLSAHDKLVSS-LAASTVNGMVASASHD---KCVKIWK 834 (834)
Q Consensus 788 ----~I~Iwd-l~~~~---~~~l~~h~~~V~~-lafspdg~~LaSgs~D---G~I~IWd 834 (834)
.|++|| ..++. ...+..+...+.. ++|+|||+.|+..+.+ +.++||+
T Consensus 332 ~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 332 GKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp SCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred cceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence 577888 45555 4455444455554 6999999998766655 7888884
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=1.6e-21 Score=234.58 Aligned_cols=274 Identities=12% Similarity=0.089 Sum_probs=207.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC-----C
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-----P 626 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s-----~ 626 (834)
...|.+++|+|| +.++.+. ++.|++||+.+++.... ..+...+.+++|+|||++|+++ .|+.|++||+.+ +
T Consensus 81 ~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 81 AFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp -CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred ccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence 357999999999 6666664 59999999999876544 4567789999999999999995 689999999987 5
Q ss_pred CceeeeeccCCCC--------------eEEEEEccCCCcEEEEEe--------------------------------CCC
Q 003279 627 DYSLRTFTGHSTT--------------VMSLDFHPSKEDLLCSCD--------------------------------NNS 660 (834)
Q Consensus 627 ~~~i~~~~~h~~~--------------V~sl~fspdg~~llasgs--------------------------------~Dg 660 (834)
.. ......+... +.+++|+|||+.+++++. .+.
T Consensus 157 ~~-~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~ 235 (706)
T 2z3z_A 157 RA-IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV 235 (706)
T ss_dssp CC-EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred Cc-EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence 53 3333333332 489999999987665541 346
Q ss_pred cEEEEECCCCceeeEee---cCCCeeEEEEecCCCEEEEEEcCC-----eEEEEECCCC-eEEEEEeC-CCC---CEEEE
Q 003279 661 EIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIEN-----YISILDVETQ-VCRLKLQG-HKN---QVHSV 727 (834)
Q Consensus 661 ~I~lwDl~s~~~i~~~~---~~~~i~~l~~sp~g~~ll~~s~dg-----~I~iwDl~t~-~~~~~l~~-h~~---~I~sl 727 (834)
.|++||+.+++...... +...+.+++|+|+++.|++++.++ .|++||+.++ ........ +.. .+.++
T Consensus 236 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 315 (706)
T 2z3z_A 236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPL 315 (706)
T ss_dssp EEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCC
T ss_pred EEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCc
Confidence 79999999888665542 234588999999999999988775 8999999998 44333322 222 24678
Q ss_pred EEcC--CCCEEEEEe-CCeEEEEEcC-CCCCceeEEEeecCCCceEE-EEEeCCCCEEEEEEcCC-----eEEEEECCCC
Q 003279 728 CWNT--SGEYLASVS-DELVRVWSIG-SGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCYE-----TLELWNMTEN 797 (834)
Q Consensus 728 ~~sp--dg~~Lasgs-Dg~I~IwDl~-s~~~~~~i~~~~~~~~~I~s-vafspdg~~L~sgs~dg-----~I~Iwdl~~~ 797 (834)
+|+| ||++|+++. |+.++||++. ++ ..+..+..+...+.. ++|+|+++.|++++.++ .|+.||+.++
T Consensus 316 ~~sp~~dg~~l~~~~~~g~~~l~~~~~~~---~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 316 TFLPGSNNQFIWQSRRDGWNHLYLYDTTG---RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG 392 (706)
T ss_dssp EECTTCSSEEEEEECTTSSCEEEEEETTS---CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred eeecCCCCEEEEEEccCCccEEEEEECCC---CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence 9999 999998887 8888888876 33 456666666777776 79999999888776653 6788888887
Q ss_pred eEEEeccCCCCeEEEEEeCCCCEEEEEecC----CcEEEeC
Q 003279 798 KTLTLSAHDKLVSSLAASTVNGMVASASHD----KCVKIWK 834 (834)
Q Consensus 798 ~~~~l~~h~~~V~~lafspdg~~LaSgs~D----G~I~IWd 834 (834)
+...+ .|...+.+++|+|||++|+.++.+ +.|++||
T Consensus 393 ~~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 393 KTKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp CCEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred Cceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence 75444 477789999999999988876544 4599985
No 144
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=9.7e-22 Score=247.70 Aligned_cols=278 Identities=8% Similarity=-0.002 Sum_probs=227.0
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEec
Q 003279 545 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 623 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t-~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 623 (834)
...+.+|...|.++.|+++ .++++++.|+.+.||.+.. +.....+..|. .+.+++|+|||++|+++ .++.|++||+
T Consensus 196 ~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~ 272 (1045)
T 1k32_A 196 FKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNP 272 (1045)
T ss_dssp EEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECT
T ss_pred eEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecC
Confidence 4455899999999999998 6777888889999997653 44555666665 46788999999999888 4899999999
Q ss_pred CCCCceeeeecc-----------CCCCeEEEEEc-cCCCcEEEEEeCCCcEEEEECCCCceeeEeecCC-CeeEEEEecC
Q 003279 624 ENPDYSLRTFTG-----------HSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPR 690 (834)
Q Consensus 624 ~s~~~~i~~~~~-----------h~~~V~sl~fs-pdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~-~i~~l~~sp~ 690 (834)
.... +..+.. |...|.+++|+ |+|..+++++ ++.|++|++..+.......+.. .+..++|+ +
T Consensus 273 ~~~~--l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-d 347 (1045)
T 1k32_A 273 DTEK--IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-T 347 (1045)
T ss_dssp TTCC--EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEEECTTSSBEEECSCCSCEEEEEECSS-S
T ss_pred CceE--eeeeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEEEcCCCCceEEccCCCcceEEeeeEc-C
Confidence 5432 334443 34479999999 9988666544 8899999999887665444445 68899999 9
Q ss_pred CCEEEEEEcCCeEE-EEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCce
Q 003279 691 LGRILAAAIENYIS-ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF 768 (834)
Q Consensus 691 g~~ll~~s~dg~I~-iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I 768 (834)
++.|++++.++.|. +||+.+++... +.+|...+.+++|+|||++|++++ ++.|++||+.++ ........+...+
T Consensus 348 g~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg---~~~~~~~~~~~~v 423 (1045)
T 1k32_A 348 KVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG---KPTVIERSREAMI 423 (1045)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECSSSCC
T ss_pred CCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC---ceEEeccCCCCCc
Confidence 99999999888899 99998876544 347888999999999999999988 889999999987 4555555788888
Q ss_pred EEEEEeCCCCEEEEEEcCC----------eEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 769 HSCVFHPTFPSLLVIGCYE----------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 769 ~svafspdg~~L~sgs~dg----------~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.+++|+|||++|++++.++ .|++||+.+++...+..|...+.+++|+|||++|++++.++...+|+
T Consensus 424 ~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 424 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred cceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcc
Confidence 9999999999999887654 89999999999778888999999999999999999999888777774
No 145
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=2.3e-21 Score=244.29 Aligned_cols=278 Identities=9% Similarity=0.077 Sum_probs=217.1
Q ss_pred EEEecCCCCCe-------EEEEEcCCCCEEEEEeCC------CcEEEEeCCCCeEE------------------------
Q 003279 545 FQLIPASTSKV-------ESCHFSPDGKLLATGGHD------KKAVLWCTESFTVK------------------------ 587 (834)
Q Consensus 545 ~~~l~gH~~~V-------~sl~fSpdg~~Lasgs~D------g~I~IWd~~t~~~~------------------------ 587 (834)
...+..|...+ .+++|+|||+++++++.+ ..|++|++.+++..
T Consensus 92 ~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~ 171 (1045)
T 1k32_A 92 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTF 171 (1045)
T ss_dssp EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCS
T ss_pred eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCC
Confidence 45667788777 999999999977777754 35778877655432
Q ss_pred -------------------------EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEE
Q 003279 588 -------------------------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 642 (834)
Q Consensus 588 -------------------------~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~s 642 (834)
..+.+|...+.++.|+++ .++++++.|+.+.||.+.........+..|. .+..
T Consensus 172 ~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~ 249 (1045)
T 1k32_A 172 ELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYP 249 (1045)
T ss_dssp CCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCE
T ss_pred CccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-Ccce
Confidence 123457778889999888 6677788889999998765333345555555 4677
Q ss_pred EEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC------------CCeeEEEEe-cCCCEEEEEEcCCeEEEEECC
Q 003279 643 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------SGATQMRFQ-PRLGRILAAAIENYISILDVE 709 (834)
Q Consensus 643 l~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~------------~~i~~l~~s-p~g~~ll~~s~dg~I~iwDl~ 709 (834)
++|+|+|..++++ .++.|++||+...... .+... ..+.+++|+ |++..+++++ ++.|.+|++.
T Consensus 250 ~~~SpDG~~la~~--~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~ 325 (1045)
T 1k32_A 250 RHLNTDGRRILFS--KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS 325 (1045)
T ss_dssp EEEEESSSCEEEE--ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT
T ss_pred eeEcCCCCEEEEE--eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCC
Confidence 8999999876654 4899999999544433 33321 258899999 9999888887 8899999999
Q ss_pred CCeEEEEEeCCCC-CEEEEEEcCCCCEEEEEe-CCeEE-EEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003279 710 TQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS-DELVR-VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 786 (834)
Q Consensus 710 t~~~~~~l~~h~~-~I~sl~~spdg~~Lasgs-Dg~I~-IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d 786 (834)
.+.... +..|.. .+.+++|+ ||+.|+.++ +..+. +||+.++. . ..+..+...+..++|+|+|++|++++.+
T Consensus 326 ~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~---~-~~l~~~~~~~~~~~~SpDG~~la~~~~~ 399 (1045)
T 1k32_A 326 GTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK---A-EKFEENLGNVFAMGVDRNGKFAVVANDR 399 (1045)
T ss_dssp SSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC---E-EECCCCCCSEEEEEECTTSSEEEEEETT
T ss_pred CCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC---c-eEecCCccceeeeEECCCCCEEEEECCC
Confidence 876543 566777 89999999 999999888 66788 88988762 2 2334667889999999999999999999
Q ss_pred CeEEEEECCCCeEEEec-cCCCCeEEEEEeCCCCEEEEEecCC----------cEEEeC
Q 003279 787 ETLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVASASHDK----------CVKIWK 834 (834)
Q Consensus 787 g~I~Iwdl~~~~~~~l~-~h~~~V~~lafspdg~~LaSgs~DG----------~I~IWd 834 (834)
+.|++||+.+++...+. .|...|.+++|+|||++|++++.++ .|++||
T Consensus 400 ~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d 458 (1045)
T 1k32_A 400 FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD 458 (1045)
T ss_dssp SEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred CeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEE
Confidence 99999999999887555 8999999999999999999887654 899996
No 146
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=1.6e-21 Score=234.92 Aligned_cols=298 Identities=11% Similarity=0.075 Sum_probs=207.5
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCC---CeEEEEEcCCCCEEEEEeCC-------
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPDGKLLATGGHD------- 573 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~---~V~sl~fSpdg~~Lasgs~D------- 573 (834)
.++++ +.|+.+++|..... . ....+.+|.. .|.+++|||||++||+++.+
T Consensus 29 ~~~~~-~~dg~i~~~d~~~g----------------~---~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~ 88 (723)
T 1xfd_A 29 EFIYR-EQKGTVRLWNVETN----------------T---STVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHS 88 (723)
T ss_dssp CBCCC-CSSSCEEEBCGGGC----------------C---CEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSC
T ss_pred cEEEE-eCCCCEEEEECCCC----------------c---EEEEeccccccccccceEEECCCCCEEEEEecCccceeec
Confidence 35544 56778888844322 1 1234455554 49999999999999999874
Q ss_pred --CcEEEEeCCCCeEEEEec---cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCC---------
Q 003279 574 --KKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT--------- 639 (834)
Q Consensus 574 --g~I~IWd~~t~~~~~~l~---~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~--------- 639 (834)
+.|++||+.+++. ..+. .|...+.+++|+|||++|++++. +.|++||+.++.. ......+...
T Consensus 89 ~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-~~~~~~~~~~~~~~g~~~~ 165 (723)
T 1xfd_A 89 YTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-IRVVSTGKEGVIYNGLSDW 165 (723)
T ss_dssp CCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-EEEECCCBTTTEEEEECCH
T ss_pred ceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce-EEEecCCCCCceECcccce
Confidence 7888999998876 3333 45556899999999999999986 7999999987654 3333333332
Q ss_pred ---------eEEEEEccCCCcEEEEEeCC---------------------------------CcEEEEECCCCceeeEee
Q 003279 640 ---------VMSLDFHPSKEDLLCSCDNN---------------------------------SEIRYWSINNGSCAGVFK 677 (834)
Q Consensus 640 ---------V~sl~fspdg~~llasgs~D---------------------------------g~I~lwDl~s~~~i~~~~ 677 (834)
+.+++|+|||+.++++...+ ..|++||+.++++...+.
T Consensus 166 v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~ 245 (723)
T 1xfd_A 166 LYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM 245 (723)
T ss_dssp HHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC
T ss_pred eEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee
Confidence 37899999998766554322 279999999887655554
Q ss_pred c-------CCCeeEEEEecCCCEEEEEEcC----CeEEEEECCCCeEEEEEeC-CCCCE----EEEEEcCCCCEEEEE-e
Q 003279 678 C-------QSGATQMRFQPRLGRILAAAIE----NYISILDVETQVCRLKLQG-HKNQV----HSVCWNTSGEYLASV-S 740 (834)
Q Consensus 678 ~-------~~~i~~l~~sp~g~~ll~~s~d----g~I~iwDl~t~~~~~~l~~-h~~~I----~sl~~spdg~~Lasg-s 740 (834)
. ...+..++|+|+++.+++.... ..|++||+.++++...+.. +...+ .+++|+|||+.|+.. +
T Consensus 246 ~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 325 (723)
T 1xfd_A 246 PPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRA 325 (723)
T ss_dssp CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEE
T ss_pred CCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEe
Confidence 3 2457889999999988776543 5799999999987666543 33444 378999999977654 3
Q ss_pred --CC------eEEEEEc-CCCCCceeEEEeecCCCceEE-EEEeCCCCEEEEEEcC---CeEEEEECCCC---eEEEecc
Q 003279 741 --DE------LVRVWSI-GSGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCY---ETLELWNMTEN---KTLTLSA 804 (834)
Q Consensus 741 --Dg------~I~IwDl-~s~~~~~~i~~~~~~~~~I~s-vafspdg~~L~sgs~d---g~I~Iwdl~~~---~~~~l~~ 804 (834)
++ .|++||+ ..+.. .+...+......+.. ++|+|+++.|++.+.+ +.++||++... +...+..
T Consensus 326 ~~~~~~~~~~~l~~~d~~~~~~~-~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 404 (723)
T 1xfd_A 326 IPQGGRGKFYHITVSSSQPNSSN-DNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSC 404 (723)
T ss_dssp ECCSSSSCEEEEEEECSSCCSSS-CCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSST
T ss_pred cccCCCcceeEEEEEeccCCCCc-cceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecc
Confidence 66 4666773 33320 012333333344444 6999999999877766 67889987542 2333433
Q ss_pred ---CCCCeEEEEEeCCCCEEEEEe
Q 003279 805 ---HDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 805 ---h~~~V~~lafspdg~~LaSgs 825 (834)
|...+..++|+|||++|+...
T Consensus 405 ~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 405 DLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp TSSSSCCCCEEEECTTSSEEEEEC
T ss_pred cccCCCCeEEEEECCCCCEEEEEc
Confidence 677899999999999887653
No 147
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=6.5e-21 Score=205.66 Aligned_cols=268 Identities=12% Similarity=0.083 Sum_probs=203.3
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEec-CCCC-CeEEEEEcCCCCEEE-EEeCCCcEEEEe
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTS-KVESCHFSPDGKLLA-TGGHDKKAVLWC 580 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~-gH~~-~V~sl~fSpdg~~La-sgs~Dg~I~IWd 580 (834)
.++++++.++.|.+|+.... . .+..+. ++.. .+.+++|+|||++|+ ++..++.|.+||
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~----------------~---~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 62 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM----------------A---VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT----------------E---EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cEEEEcCCCCeEEEEECCCC----------------c---EEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEE
Confidence 46788888999999965322 1 122232 2222 478899999998765 455678999999
Q ss_pred CCCCeEEEEecc-C----CCCeEEEEECCCCCEEEEEe------------CCCeEEEEecCCCCceeeeeccCCCCeEEE
Q 003279 581 TESFTVKSTLEE-H----TQWITDVRFSPSLSRLATSS------------ADRTVRVWDTENPDYSLRTFTGHSTTVMSL 643 (834)
Q Consensus 581 ~~t~~~~~~l~~-h----~~~I~~l~fspdg~~Latgs------------~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl 643 (834)
+.+++.+..+.. + ...+.+++|+|++++|++++ .++.|.+||+.+++. +..+.. ...+.++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFEA-PRQITML 140 (337)
T ss_dssp TTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEEC-CSSCCCE
T ss_pred CCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE-EEEEeC-CCCccee
Confidence 999988877653 2 22678999999999999886 579999999987553 444443 4568889
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCC----------------------
Q 003279 644 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN---------------------- 701 (834)
Q Consensus 644 ~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg---------------------- 701 (834)
+|+|+++.++++ ++.|++||+.+++.+..+........+.|+|++..+++.+..+
T Consensus 141 ~~s~dg~~l~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
T 1pby_B 141 AWARDGSKLYGL---GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAY 217 (337)
T ss_dssp EECTTSSCEEEE---SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGE
T ss_pred EECCCCCEEEEe---CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccccccccccccc
Confidence 999999876655 6889999999999887776544223447888888766554332
Q ss_pred --eEEEEECCCCeEE-EEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 003279 702 --YISILDVETQVCR-LKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 778 (834)
Q Consensus 702 --~I~iwDl~t~~~~-~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~ 778 (834)
.|.+||+.+++.. ..+..+...+.+++|+|++++|+++ ++.|++||+.++ +.+..+.. ...+.+++|+|+++
T Consensus 218 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~ 292 (337)
T 1pby_B 218 RTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKN---ASIKRVPL-PHSYYSVNVSTDGS 292 (337)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTT---EEEEEEEC-SSCCCEEEECTTSC
T ss_pred ccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCC---cCcceecC-CCceeeEEECCCCC
Confidence 4789999998664 3344566788999999999999888 799999999887 55555543 35678999999999
Q ss_pred EEEEEEcCCeEEEEECCCCeEE
Q 003279 779 SLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 779 ~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
+|++++.++.|++||+.+++.+
T Consensus 293 ~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 293 TVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp EEEEESBSSEEEEEETTTCCEE
T ss_pred EEEEEcCCCcEEEEECcCCcEE
Confidence 9999988999999999998877
No 148
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=2.6e-20 Score=203.73 Aligned_cols=267 Identities=11% Similarity=0.096 Sum_probs=185.7
Q ss_pred EEEEEeC----CCcEEEEeC--CCCeEEE-EeccCCCCeEEEEECCCCCEEEEEeC---CCeEEEEecCCCCc-eeeeec
Q 003279 566 LLATGGH----DKKAVLWCT--ESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDY-SLRTFT 634 (834)
Q Consensus 566 ~Lasgs~----Dg~I~IWd~--~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~---Dg~I~IWDl~s~~~-~i~~~~ 634 (834)
.|++|+. ++.|.+|++ ++++... ....+...+..++|+||++ |++++. ++.|++||+.++.. .+..+.
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~ 82 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV 82 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee
Confidence 3555532 456777654 4566543 3334567788999999999 555544 68999999976543 233445
Q ss_pred cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-Cc--eeeEeecC----------CCeeEEEEecCCCEEEEEEcCC
Q 003279 635 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GS--CAGVFKCQ----------SGATQMRFQPRLGRILAAAIEN 701 (834)
Q Consensus 635 ~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s-~~--~i~~~~~~----------~~i~~l~~sp~g~~ll~~s~dg 701 (834)
.+...+..++|+|+++.+++++..++.|.+|++.. +. .+..+... ..+.+++|+|+++.+++...++
T Consensus 83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~ 162 (347)
T 3hfq_A 83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD 162 (347)
T ss_dssp EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence 57788999999999987776665789999999963 33 23333221 2377899999999444444578
Q ss_pred eEEEEECC-CCeEE--EEEeC-CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC-CCceeEEEeecCC------Cce
Q 003279 702 YISILDVE-TQVCR--LKLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSCTG------NKF 768 (834)
Q Consensus 702 ~I~iwDl~-t~~~~--~~l~~-h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~-~~~~~i~~~~~~~------~~I 768 (834)
.|.+||+. +++.. ..+.. ....+..++|+|||++|+++. ++.|.+|++... .....+..+.... ..+
T Consensus 163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 242 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGA 242 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEE
T ss_pred EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcc
Confidence 99999998 55432 22232 234678999999999777765 789999998752 1112233333322 458
Q ss_pred EEEEEeCCCCEEEEEE-cCCeEEEEECCC-C--eEE-EeccCCCCeEEEEEeCCCCEEEEEecC-CcEEEe
Q 003279 769 HSCVFHPTFPSLLVIG-CYETLELWNMTE-N--KTL-TLSAHDKLVSSLAASTVNGMVASASHD-KCVKIW 833 (834)
Q Consensus 769 ~svafspdg~~L~sgs-~dg~I~Iwdl~~-~--~~~-~l~~h~~~V~~lafspdg~~LaSgs~D-G~I~IW 833 (834)
..++|+|+|++|++++ .++.|.+|++.. + +.+ .+..+...+.+++|+|||++|++++.+ +.|.+|
T Consensus 243 ~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 243 AAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp EEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred eeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 8899999999886554 578999999973 2 233 444566778999999999988888754 899999
No 149
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.88 E-value=9.8e-21 Score=205.56 Aligned_cols=270 Identities=9% Similarity=0.039 Sum_probs=195.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCC-CCeEEEEECCCCCEEE-EEeCCCeEEEEecCCCCceeeeec
Q 003279 557 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFT 634 (834)
Q Consensus 557 sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~-~~I~~l~fspdg~~La-tgs~Dg~I~IWDl~s~~~~i~~~~ 634 (834)
.+++++++.++++++.++.|++||+.+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++. ...+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~-~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE-EEEEE
Confidence 45678889999999999999999999999988876543 2578999999998665 455689999999987654 33333
Q ss_pred -cC-----CCCeEEEEEccCCCcEEEEEeC-----------CCcEEEEECCCCc---eeeEeecCCCeeEEEEecCCCEE
Q 003279 635 -GH-----STTVMSLDFHPSKEDLLCSCDN-----------NSEIRYWSINNGS---CAGVFKCQSGATQMRFQPRLGRI 694 (834)
Q Consensus 635 -~h-----~~~V~sl~fspdg~~llasgs~-----------Dg~I~lwDl~s~~---~i~~~~~~~~i~~l~~sp~g~~l 694 (834)
.+ ...+.+++|+|+++.++++... ++.|.+||+.+++ .+..+.....+.+++|+|+++ +
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-L 161 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-E
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-E
Confidence 22 2347899999998866655533 4899999998844 344555566788999999999 6
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEeCCCC------------------------CEEEEEEcCCCCEEEEEe--CCeEEEEE
Q 003279 695 LAAAIENYISILDVETQVCRLKLQGHKN------------------------QVHSVCWNTSGEYLASVS--DELVRVWS 748 (834)
Q Consensus 695 l~~s~dg~I~iwDl~t~~~~~~l~~h~~------------------------~I~sl~~spdg~~Lasgs--Dg~I~IwD 748 (834)
+++ ++.|.+||+.+++.+..+..+.. ...++++++++....... ...+..+|
T Consensus 162 ~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVA--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEE--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEc--cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 664 34599999999988877754320 344567766543221111 11223355
Q ss_pred cCCCCCceeEEEeecCCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecC
Q 003279 749 IGSGSKGECIHELSCTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 749 l~s~~~~~~i~~~~~~~~~I~svafsp-dg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~D 827 (834)
..++. .....+......+..++|+| ++++++++ ++.|++||+.+++.+........+.+++|+|++++|++++.+
T Consensus 240 ~~~~~--~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 315 (349)
T 1jmx_B 240 LKTGK--THTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTF 315 (349)
T ss_dssp TTTCC--EEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBS
T ss_pred ccCCc--EEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCC
Confidence 55442 12222333566788999999 99998888 889999999999987555555678899999999988888899
Q ss_pred CcEEEeC
Q 003279 828 KCVKIWK 834 (834)
Q Consensus 828 G~I~IWd 834 (834)
+.|++||
T Consensus 316 ~~v~v~d 322 (349)
T 1jmx_B 316 NDLAVFN 322 (349)
T ss_dssp SEEEEEE
T ss_pred CeEEEEe
Confidence 9999996
No 150
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.88 E-value=5.9e-21 Score=211.53 Aligned_cols=286 Identities=12% Similarity=0.070 Sum_probs=208.5
Q ss_pred EEEecCCCCCeEE-----EEEcCCCCEEEEEeC-CC--cEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 003279 545 FQLIPASTSKVES-----CHFSPDGKLLATGGH-DK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 616 (834)
Q Consensus 545 ~~~l~gH~~~V~s-----l~fSpdg~~Lasgs~-Dg--~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg 616 (834)
+..+..|...+.. .+|+|||++|++++. ++ .|++||+.+++......++...+..++|+||++.|++++.++
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~ 102 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGR 102 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTT
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCC
Confidence 4556667666665 889999999999887 66 488899999988877777777776789999999999999999
Q ss_pred eEEEEecCCCCceeeeeccCCCCeEEEE--EccCCCcEEEEE---------------------eCCCcEEEEECCCCcee
Q 003279 617 TVRVWDTENPDYSLRTFTGHSTTVMSLD--FHPSKEDLLCSC---------------------DNNSEIRYWSINNGSCA 673 (834)
Q Consensus 617 ~I~IWDl~s~~~~i~~~~~h~~~V~sl~--fspdg~~llasg---------------------s~Dg~I~lwDl~s~~~i 673 (834)
.|++||+.+++. ...+..+...+.... +++++..+++.. +.+..|++||+.+++..
T Consensus 103 ~l~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 181 (388)
T 3pe7_A 103 NLMRVDLATLEE-NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST 181 (388)
T ss_dssp EEEEEETTTCCE-EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE
T ss_pred eEEEEECCCCcc-eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE
Confidence 999999998764 334444555554444 478887554321 23468999999999877
Q ss_pred eEeecCCCeeEEEEec-CCCEEEEEEcC------CeEEEEECCCCeEEEEEeCCC--CCEEEEEEcCCCCEEEEEe--CC
Q 003279 674 GVFKCQSGATQMRFQP-RLGRILAAAIE------NYISILDVETQVCRLKLQGHK--NQVHSVCWNTSGEYLASVS--DE 742 (834)
Q Consensus 674 ~~~~~~~~i~~l~~sp-~g~~ll~~s~d------g~I~iwDl~t~~~~~~l~~h~--~~I~sl~~spdg~~Lasgs--Dg 742 (834)
........+..+.|+| +++.|+++..+ ..|.++|+..+... .+..+. ..+..++|+|||+.|+..+ ++
T Consensus 182 ~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 260 (388)
T 3pe7_A 182 VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLKG 260 (388)
T ss_dssp EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEETT
T ss_pred EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecCCC
Confidence 7777777799999999 99988887763 37888898765443 333343 3578899999999776544 23
Q ss_pred ----eEEEEEcCCCCCceeEEEeecCCCc---eEEEEEeCCCCEEEEE---------EcCCeEEEEECCCCeEEEeccCC
Q 003279 743 ----LVRVWSIGSGSKGECIHELSCTGNK---FHSCVFHPTFPSLLVI---------GCYETLELWNMTENKTLTLSAHD 806 (834)
Q Consensus 743 ----~I~IwDl~s~~~~~~i~~~~~~~~~---I~svafspdg~~L~sg---------s~dg~I~Iwdl~~~~~~~l~~h~ 806 (834)
.|++||+.++.. ..+..+..+... ...++|+|+|+.|++. ..+..|++||+.+++...+..|.
T Consensus 261 ~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~ 339 (388)
T 3pe7_A 261 SPDRFIYSADPETLEN-RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHD 339 (388)
T ss_dssp CCCEEEEEECTTTCCE-EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECC
T ss_pred CCcceEEEEecCCCce-EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEecccc
Confidence 399999998743 233333221000 1113799999988865 34558999999999887777776
Q ss_pred C-----------CeEEEEEeCCCCEEEEEe-cCCcEEEe
Q 003279 807 K-----------LVSSLAASTVNGMVASAS-HDKCVKIW 833 (834)
Q Consensus 807 ~-----------~V~~lafspdg~~LaSgs-~DG~I~IW 833 (834)
. .+.+++|+|||+.|+.++ .+|...||
T Consensus 340 ~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~ 378 (388)
T 3pe7_A 340 TSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY 378 (388)
T ss_dssp CCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred CcccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence 6 688899999999877665 57777777
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=7.8e-20 Score=199.88 Aligned_cols=250 Identities=14% Similarity=0.154 Sum_probs=184.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCe--EEEEeccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEec
Q 003279 550 ASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDT 623 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~---Dg~I~IWd~~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl 623 (834)
.+...+..++|+|||+ |++++. ++.|++||+.+++ .+..+..+...+..++|+|++++|++++ .++.|.+|++
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 3446678899999999 555544 6899999998765 4445456778899999999999998888 6799999999
Q ss_pred CCCCc--eeeeecc---------CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC-CCceeeE--ee--cCCCeeEEEE
Q 003279 624 ENPDY--SLRTFTG---------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGV--FK--CQSGATQMRF 687 (834)
Q Consensus 624 ~s~~~--~i~~~~~---------h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~-s~~~i~~--~~--~~~~i~~l~~ 687 (834)
..... .+..+.. +...+.+++|+|+++ ++++...++.|.+||+. +++.... +. ....+..++|
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~ 194 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF 194 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence 64322 1222211 123488999999998 88777778999999998 5543322 22 2346788999
Q ss_pred ecCCCEEEEEE-cCCeEEEEECCC--CeE--EEEEeCCC------CCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC
Q 003279 688 QPRLGRILAAA-IENYISILDVET--QVC--RLKLQGHK------NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK 754 (834)
Q Consensus 688 sp~g~~ll~~s-~dg~I~iwDl~t--~~~--~~~l~~h~------~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~ 754 (834)
+|+++++++++ .++.|.+|++.. ++. +..+.... ..+..++|+|||++|+++. ++.|.+|++.....
T Consensus 195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~ 274 (347)
T 3hfq_A 195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH 274 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc
Confidence 99999777765 468999999874 543 33333332 3588999999999875544 78999999974323
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEE--ECCCCeEEE
Q 003279 755 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELW--NMTENKTLT 801 (834)
Q Consensus 755 ~~~i~~~~~~~~~I~svafspdg~~L~sgs~d-g~I~Iw--dl~~~~~~~ 801 (834)
...+..+..+...+..++|+|+|++|++++.+ +.|.+| |..++++..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 275 LTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp EEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 35666666666778899999999999988875 799999 556677653
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=2.4e-19 Score=197.36 Aligned_cols=262 Identities=12% Similarity=0.087 Sum_probs=190.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC----CcEEEEeCCC--CeE--EEEeccCCCCeEEEEECCCCCEEEEEe-CCCeEEEE
Q 003279 551 STSKVESCHFSPDGKLLATGGHD----KKAVLWCTES--FTV--KSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVW 621 (834)
Q Consensus 551 H~~~V~sl~fSpdg~~Lasgs~D----g~I~IWd~~t--~~~--~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IW 621 (834)
|...+..++|+|||++|++++.+ +.|.+|++.. ++. +..+..+......+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 66778889999999999999886 7999998765 443 3444445667788888 788777776 57899999
Q ss_pred ecCCCCcee--ee---ecc--------CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce--------------ee
Q 003279 622 DTENPDYSL--RT---FTG--------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--------------AG 674 (834)
Q Consensus 622 Dl~s~~~~i--~~---~~~--------h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~--------------i~ 674 (834)
++....... .. ..+ +...+.+++|+|+++.+++++..++.|.+|++..... ..
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 997543211 11 111 1234588999999998887777789999999875431 12
Q ss_pred EeecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeE--EEEEe---CCCCCEEEEEEcCCCCEEEEEe-C--CeEE
Q 003279 675 VFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVC--RLKLQ---GHKNQVHSVCWNTSGEYLASVS-D--ELVR 745 (834)
Q Consensus 675 ~~~~~~~i~~l~~sp~g~~ll~~s-~dg~I~iwDl~t~~~--~~~l~---~h~~~I~sl~~spdg~~Lasgs-D--g~I~ 745 (834)
.......+..++|+|+++++++++ .++.|.+||+.++.. +..+. .+...+.+++|+|||++|+++. + +.|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 223356688999999999988888 589999999987754 33332 2345678999999999987766 5 6899
Q ss_pred EEEcCC-CCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEE--ECCCCeEEEec--cCCCCeEEEEEe
Q 003279 746 VWSIGS-GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELW--NMTENKTLTLS--AHDKLVSSLAAS 815 (834)
Q Consensus 746 IwDl~s-~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs-~dg~I~Iw--dl~~~~~~~l~--~h~~~V~~lafs 815 (834)
+|++.. ......+..+.. ...+..++|+|+|++|++++ .++.|.+| |..++++..+. .+...+.||.|.
T Consensus 286 v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 999962 222234555554 56778999999999999988 46788885 55677766443 345678999886
No 153
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.86 E-value=5e-20 Score=221.51 Aligned_cols=245 Identities=14% Similarity=0.132 Sum_probs=184.5
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-----CeEEEEeccCCCC--------------eEEEEECCCCC
Q 003279 547 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQW--------------ITDVRFSPSLS 607 (834)
Q Consensus 547 ~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t-----~~~~~~l~~h~~~--------------I~~l~fspdg~ 607 (834)
.+..|...+.+++|||||++||++ .|+.|++||+.+ ++.......+... +.+++|+|||+
T Consensus 115 ~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~ 193 (706)
T 2z3z_A 115 YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGS 193 (706)
T ss_dssp EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSS
T ss_pred EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCC
Confidence 344567779999999999999995 679999999998 7776554444433 48999999999
Q ss_pred EEEEEe---------------------------------CCCeEEEEecCCCCceeeee-ccCCCCeEEEEEccCCCcEE
Q 003279 608 RLATSS---------------------------------ADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLL 653 (834)
Q Consensus 608 ~Latgs---------------------------------~Dg~I~IWDl~s~~~~i~~~-~~h~~~V~sl~fspdg~~ll 653 (834)
+|++++ .+..|++||+.++....... ..|...+.+++|+||++.++
T Consensus 194 ~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 273 (706)
T 2z3z_A 194 CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILY 273 (706)
T ss_dssp EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEE
T ss_pred EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEE
Confidence 999998 45789999998765322221 24677899999999998666
Q ss_pred EEEeCCC-----cEEEEECCCC-ceeeEeec--CC---CeeEEEEec--CCCEEEEEEcCCeEEEEECC-CCeEEEEEeC
Q 003279 654 CSCDNNS-----EIRYWSINNG-SCAGVFKC--QS---GATQMRFQP--RLGRILAAAIENYISILDVE-TQVCRLKLQG 719 (834)
Q Consensus 654 asgs~Dg-----~I~lwDl~s~-~~i~~~~~--~~---~i~~l~~sp--~g~~ll~~s~dg~I~iwDl~-t~~~~~~l~~ 719 (834)
+++ .++ .|++||+.++ ........ .. .+..+.|+| ++++++++..++.+.||++. ++..+..+..
T Consensus 274 ~~~-~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~ 352 (706)
T 2z3z_A 274 VAE-VNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK 352 (706)
T ss_dssp EEE-ECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC
T ss_pred EEE-eCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC
Confidence 444 344 8999999998 43333322 11 246789999 99988888888988888876 5677777887
Q ss_pred CCCCEEE-EEEcCCCCEEEEEe--CC----eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC----Ce
Q 003279 720 HKNQVHS-VCWNTSGEYLASVS--DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY----ET 788 (834)
Q Consensus 720 h~~~I~s-l~~spdg~~Lasgs--Dg----~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d----g~ 788 (834)
+...+.+ ++|+|+++.|++++ ++ .|+.||+.++. ...+. +...+.+++|+|+|++|++++.+ +.
T Consensus 353 ~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~----~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~ 427 (706)
T 2z3z_A 353 GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK----TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRK 427 (706)
T ss_dssp SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC----CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCE
T ss_pred CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC----ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcE
Confidence 8888877 79999999887665 44 67777776653 22232 45678999999999998877554 36
Q ss_pred EEEEECCCCe
Q 003279 789 LELWNMTENK 798 (834)
Q Consensus 789 I~Iwdl~~~~ 798 (834)
|++||+.+++
T Consensus 428 i~l~d~~~~~ 437 (706)
T 2z3z_A 428 VTVTNIGKGS 437 (706)
T ss_dssp EEEEESSSCE
T ss_pred EEEEECCCCe
Confidence 9999999887
No 154
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=2.5e-19 Score=195.04 Aligned_cols=235 Identities=9% Similarity=0.086 Sum_probs=190.6
Q ss_pred CCCeEEEEECCCCCEEEEEeC-------CCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 003279 594 TQWITDVRFSPSLSRLATSSA-------DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 666 (834)
Q Consensus 594 ~~~I~~l~fspdg~~Latgs~-------Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwD 666 (834)
...+..++|+|++++|++++. ++.|.+||..+++. +..+.. ...+.+++|+|+++.+++++..++.|.+||
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV-TQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-EEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-EEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 356889999999999888874 56899999998764 444432 345788999999998888888889999999
Q ss_pred CCCCceeeEeecCC----------CeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCC
Q 003279 667 INNGSCAGVFKCQS----------GATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE 734 (834)
Q Consensus 667 l~s~~~i~~~~~~~----------~i~~l~~sp~g~~ll~~s~--dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~ 734 (834)
+.+++.+..+..+. .+.+++|+|+++++++++. ++.|.+||+++++.+..+..+...+.+++|+|+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence 99999888887633 1688999999998888873 68899999999999988876666788999999999
Q ss_pred EEEEEe-CCeEEEEEcCCCCCceeEEEeec----CCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEeccCCCC
Q 003279 735 YLASVS-DELVRVWSIGSGSKGECIHELSC----TGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKL 808 (834)
Q Consensus 735 ~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~----~~~~I~svafspdg~~L~sgs~d-g~I~Iwdl~~~~~~~l~~h~~~ 808 (834)
+|+++. ++.|.+||+.++ +.+..+.. +...+..++|+|+++++++++.+ +.|.+||+.+++.+.......
T Consensus 198 ~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~- 273 (353)
T 3vgz_A 198 RLYTTNADGELITIDTADN---KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE- 273 (353)
T ss_dssp EEEEECTTSEEEEEETTTT---EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-
T ss_pred EEEEEcCCCeEEEEECCCC---eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-
Confidence 999888 899999999987 55555543 45567889999999988887765 799999999998874333222
Q ss_pred eEEEEEeCCCCEEEEEe-cCCcEEEeC
Q 003279 809 VSSLAASTVNGMVASAS-HDKCVKIWK 834 (834)
Q Consensus 809 V~~lafspdg~~LaSgs-~DG~I~IWd 834 (834)
..+++|+|+++++++++ .++.|.+||
T Consensus 274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 274 SLAVLFNPARNEAYVTHRQAGKVSVID 300 (353)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CceEEECCCCCEEEEEECCCCeEEEEE
Confidence 36799999999665555 689999996
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.86 E-value=4e-19 Score=195.49 Aligned_cols=268 Identities=9% Similarity=0.072 Sum_probs=188.7
Q ss_pred CCCEEEEEeC----CCcEEEEeC--CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC----CeEEEEecCCC--Cc-e
Q 003279 563 DGKLLATGGH----DKKAVLWCT--ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENP--DY-S 629 (834)
Q Consensus 563 dg~~Lasgs~----Dg~I~IWd~--~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D----g~I~IWDl~s~--~~-~ 629 (834)
...++++|+. ++.|++|++ ++++.......+...+..++|+||+++|++++.+ +.|.+|+++.. .. .
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~ 91 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL 91 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE
Confidence 3345666643 568888865 4555443222267778899999999999999886 79999998764 21 2
Q ss_pred eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeE----eec-----------CCCeeEEEEecCCCEE
Q 003279 630 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKC-----------QSGATQMRFQPRLGRI 694 (834)
Q Consensus 630 i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~----~~~-----------~~~i~~l~~sp~g~~l 694 (834)
+.....+...+..+++ +++.++++...++.|.+|++.....+.. +.. ...+.+++|+|+++++
T Consensus 92 ~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l 169 (361)
T 3scy_A 92 LNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL 169 (361)
T ss_dssp EEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE
T ss_pred eeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE
Confidence 2333445567788888 7776776666789999999975433221 111 1234789999999988
Q ss_pred EEEEc-CCeEEEEECCCCe-------E------EEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeE
Q 003279 695 LAAAI-ENYISILDVETQV-------C------RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECI 758 (834)
Q Consensus 695 l~~s~-dg~I~iwDl~t~~-------~------~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i 758 (834)
++++. ++.|.+|++.... . ......+...+.+++|+|+|++|+++. ++.|.+||+.++.. ..+
T Consensus 170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~-~~~ 248 (361)
T 3scy_A 170 LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML-DEI 248 (361)
T ss_dssp EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE-EEE
T ss_pred EEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce-EEe
Confidence 77775 7899999887533 1 122223456788999999999887766 78999999986521 223
Q ss_pred EEee---cCCCceEEEEEeCCCCEEEEEEcC--CeEEEEECC--CCeEE--EeccCCCCeEEEEEeCCCCEEEEEe-cCC
Q 003279 759 HELS---CTGNKFHSCVFHPTFPSLLVIGCY--ETLELWNMT--ENKTL--TLSAHDKLVSSLAASTVNGMVASAS-HDK 828 (834)
Q Consensus 759 ~~~~---~~~~~I~svafspdg~~L~sgs~d--g~I~Iwdl~--~~~~~--~l~~h~~~V~~lafspdg~~LaSgs-~DG 828 (834)
..+. .+......++|+|+|++|+++..+ +.|.+|++. +++.. ........+.+++|+|||++|++++ .++
T Consensus 249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~ 328 (361)
T 3scy_A 249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTN 328 (361)
T ss_dssp EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTT
T ss_pred EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCC
Confidence 3332 233456899999999999887765 799999985 45532 2222256789999999999888887 678
Q ss_pred cEEEe
Q 003279 829 CVKIW 833 (834)
Q Consensus 829 ~I~IW 833 (834)
.|.+|
T Consensus 329 ~v~v~ 333 (361)
T 3scy_A 329 VIQIF 333 (361)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 89996
No 156
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=1.1e-19 Score=206.90 Aligned_cols=240 Identities=10% Similarity=0.090 Sum_probs=177.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-----------eEE-----EEeccCCCCeEEEEECCCCCEEE----E
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----------TVK-----STLEEHTQWITDVRFSPSLSRLA----T 611 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~-----------~~~-----~~l~~h~~~I~~l~fspdg~~La----t 611 (834)
...+..+++++++.+|++++.|+ |+||+.... ... ..+ .+...|++++|+|++++|+ +
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEec
Confidence 34588999999999999999887 888864311 111 112 3567899999999999999 7
Q ss_pred EeCCCeEEEEecCCC-----Cc-----eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCC
Q 003279 612 SSADRTVRVWDTENP-----DY-----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQS 680 (834)
Q Consensus 612 gs~Dg~I~IWDl~s~-----~~-----~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~ 680 (834)
++.|+.|+|||+.+. .. .+..+.+|...|.+++|+|+...+|++++.||.|++||++++..+.... +..
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~ 193 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV 193 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC
Confidence 888999999998753 11 2456677999999999999977789999999999999999886654433 467
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC-------CCEEEEEEcCCCCEEEEEe--CC------eEE
Q 003279 681 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-------NQVHSVCWNTSGEYLASVS--DE------LVR 745 (834)
Q Consensus 681 ~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~-------~~I~sl~~spdg~~Lasgs--Dg------~I~ 745 (834)
.+.+++|+|++.+|++++.||.|++||++ +.....+..|. ..|.+++|++++.++++.+ || .++
T Consensus 194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~ 272 (434)
T 2oit_A 194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVV 272 (434)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEE
T ss_pred ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceE
Confidence 89999999999999999999999999998 55555554432 3799999999998887655 53 399
Q ss_pred EEEcCCCCC--ceeEEEee-------cCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEC
Q 003279 746 VWSIGSGSK--GECIHELS-------CTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM 794 (834)
Q Consensus 746 IwDl~s~~~--~~~i~~~~-------~~~~~I~svafspdg~~L~sgs~dg-~I~Iwdl 794 (834)
+|++++... ......+. ........+.+.++.+++++++... .|.|+..
T Consensus 273 i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 273 MALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp EEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred EEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 999986532 11222211 1222333444557777777776643 4555554
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=226.62 Aligned_cols=271 Identities=11% Similarity=0.065 Sum_probs=199.3
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCC---CeEEEEECCCCCEEEEEeC---------CCeEEEEecC
Q 003279 557 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSPSLSRLATSSA---------DRTVRVWDTE 624 (834)
Q Consensus 557 sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~---~I~~l~fspdg~~Latgs~---------Dg~I~IWDl~ 624 (834)
+++|+|||+++++ +.|+.|++||+.+++....+..|.. .|.+++|+|||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 6899999965554 5699999999999998877766544 4899999999999999876 7899999998
Q ss_pred CCCcee-eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC--C-----------------CeeE
Q 003279 625 NPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--S-----------------GATQ 684 (834)
Q Consensus 625 s~~~~i-~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~--~-----------------~i~~ 684 (834)
+++... ..+ ...+.+++|+|||+.++++ . ++.|++||+.++++....... . ...+
T Consensus 99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~-~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYV-Y-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp TTEECCSSCC---CSSBCCEEECSSTTCEEEE-E-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred CCccccceec---CcccccceECCCCCEEEEE-E-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 765310 222 2568899999999876654 3 789999999988765433221 1 1248
Q ss_pred EEEecCCCEEEEEEcCC----------------------------------eEEEEECCCCeEE--EE------EeCCCC
Q 003279 685 MRFQPRLGRILAAAIEN----------------------------------YISILDVETQVCR--LK------LQGHKN 722 (834)
Q Consensus 685 l~~sp~g~~ll~~s~dg----------------------------------~I~iwDl~t~~~~--~~------l~~h~~ 722 (834)
+.|+|||++|++++.|. .|++||+.+++.. .. +.+|..
T Consensus 174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 253 (719)
T 1z68_A 174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY 253 (719)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence 99999999999988652 7889999987642 11 235778
Q ss_pred CEEEEEEcCCCCEEEEEe-C----CeEEEEE----cCCCCCceeEE-EeecCCCceE-----EEEEeCCCCEEEEE--Ec
Q 003279 723 QVHSVCWNTSGEYLASVS-D----ELVRVWS----IGSGSKGECIH-ELSCTGNKFH-----SCVFHPTFPSLLVI--GC 785 (834)
Q Consensus 723 ~I~sl~~spdg~~Lasgs-D----g~I~IwD----l~s~~~~~~i~-~~~~~~~~I~-----svafspdg~~L~sg--s~ 785 (834)
.+.+++|+||++++++.. . ..|.+|| +.++.....+. ....+...+. .++|+|+|+.|+.. ..
T Consensus 254 ~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 333 (719)
T 1z68_A 254 YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK 333 (719)
T ss_dssp EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT
T ss_pred eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEcc
Confidence 899999999988777754 2 2588899 76653222221 0134455555 78999999976653 33
Q ss_pred CC--eEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecC-----CcEEEeC
Q 003279 786 YE--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD-----KCVKIWK 834 (834)
Q Consensus 786 dg--~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~D-----G~I~IWd 834 (834)
++ .|++||+.+++...+..+...|..+.++ +++.|+..+.+ +.++||+
T Consensus 334 ~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 334 DGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp TSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred CCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 44 7888999888876777777778888888 88877766654 7788883
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.84 E-value=1.4e-18 Score=192.32 Aligned_cols=267 Identities=11% Similarity=0.059 Sum_probs=187.0
Q ss_pred EEEEEeCC--CcEEEEeC--CCCeEEEE--ec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC-CCCceeeeecc-C
Q 003279 566 LLATGGHD--KKAVLWCT--ESFTVKST--LE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-NPDYSLRTFTG-H 636 (834)
Q Consensus 566 ~Lasgs~D--g~I~IWd~--~t~~~~~~--l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~-s~~~~i~~~~~-h 636 (834)
+|++|+.. +.|.+|++ ++++.... .. .....+..++|+|++++|++++.+ .|.+|++. ++.. ...... .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~-~~~~~~~~ 81 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI-VHEASHPI 81 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE-EEEEEEEC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE-EEeeEeec
Confidence 45666653 46877764 56654322 21 234568899999999999999888 99999997 5443 222111 1
Q ss_pred CCCeEEEEEccCCCc-EEEEEe-------------CCCcEEEEECC-CCceeeEee-----cCCCeeEEEEecCCCEEEE
Q 003279 637 STTVMSLDFHPSKED-LLCSCD-------------NNSEIRYWSIN-NGSCAGVFK-----CQSGATQMRFQPRLGRILA 696 (834)
Q Consensus 637 ~~~V~sl~fspdg~~-llasgs-------------~Dg~I~lwDl~-s~~~i~~~~-----~~~~i~~l~~sp~g~~ll~ 696 (834)
.+.+.+++|+|+++. ++++++ .++.+.+|++. +++....+. ....+.+++|+|+++++++
T Consensus 82 ~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~ 161 (365)
T 1jof_A 82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS 161 (365)
T ss_dssp CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence 123667899999886 344543 68999999997 466554443 3457899999999999888
Q ss_pred EEc-CCeEEEEECC-CCeEE--EEEe--CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCC--CCCceeEEEee---c
Q 003279 697 AAI-ENYISILDVE-TQVCR--LKLQ--GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS--GSKGECIHELS---C 763 (834)
Q Consensus 697 ~s~-dg~I~iwDl~-t~~~~--~~l~--~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s--~~~~~~i~~~~---~ 763 (834)
+.. ++.|++||+. +++.. ..+. .|...+..++|+|||++|+++. ++.|.+|++.. +........+. .
T Consensus 162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~ 241 (365)
T 1jof_A 162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP 241 (365)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred EcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC
Confidence 775 5899999998 67543 3343 2456799999999999988876 67999998763 32110011221 1
Q ss_pred C----CC------ceEEEE-EeCCCCEEEEEEcCC------eEEEEECC-CCeEEE----eccCCCCeEEEEEeC---CC
Q 003279 764 T----GN------KFHSCV-FHPTFPSLLVIGCYE------TLELWNMT-ENKTLT----LSAHDKLVSSLAAST---VN 818 (834)
Q Consensus 764 ~----~~------~I~sva-fspdg~~L~sgs~dg------~I~Iwdl~-~~~~~~----l~~h~~~V~~lafsp---dg 818 (834)
. .. .+..++ |+|+|++|+++..+. .|.+|++. +++... ...+...+..++|+| ||
T Consensus 242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD 321 (365)
T ss_dssp TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC
Confidence 1 11 478899 999999988776533 89999996 566543 223556678899999 89
Q ss_pred CEEEEEecC-CcEEEeC
Q 003279 819 GMVASASHD-KCVKIWK 834 (834)
Q Consensus 819 ~~LaSgs~D-G~I~IWd 834 (834)
++|++++.+ +.|.||+
T Consensus 322 ~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYR 338 (365)
T ss_dssp TEEEEECSSSCEEEEEE
T ss_pred CEEEEEEcCCCeEEEEE
Confidence 999998864 8999995
No 159
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.83 E-value=1.4e-19 Score=200.24 Aligned_cols=272 Identities=12% Similarity=0.026 Sum_probs=192.7
Q ss_pred eEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceee
Q 003279 555 VESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 631 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~D---g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~ 631 (834)
+.+++|+|||++|+.+..+ ..|++||+.+++.......+...+..+.|+||+++|+.++.++.|++||+.++.. ..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~-~~ 116 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE-QV 116 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE-EE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc-EE
Confidence 7788999999998877543 4788899998876554443333344488999999999999999999999987653 33
Q ss_pred eeccCCCCeEE-------------------EEEccCCCcEEEEE----eCCCcEEEEECCCCceeeEeecCCCeeEEEEe
Q 003279 632 TFTGHSTTVMS-------------------LDFHPSKEDLLCSC----DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ 688 (834)
Q Consensus 632 ~~~~h~~~V~s-------------------l~fspdg~~llasg----s~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~s 688 (834)
....+...... ++|+|+++.+++.. ..+..|++||+.+++..........+..+.|+
T Consensus 117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~s 196 (396)
T 3c5m_A 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYR 196 (396)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEE
T ss_pred EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceEC
Confidence 33333332222 34677776555432 45678999999998887777777789999999
Q ss_pred c-CCCEEEEEEcC------CeEEEEECCCCeEEEEEeCC-CCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCC
Q 003279 689 P-RLGRILAAAIE------NYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSK 754 (834)
Q Consensus 689 p-~g~~ll~~s~d------g~I~iwDl~t~~~~~~l~~h-~~~I~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~ 754 (834)
| +++.|++++.+ ..|.+||+..+......... ...+..++|+|+|++|+..+ + +.|++||+.++..
T Consensus 197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (396)
T 3c5m_A 197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN 276 (396)
T ss_dssp TTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred CCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence 9 78877777653 36899998766533322211 23578899999999777665 3 3499999987632
Q ss_pred ceeEEEeecCCCceEEEEEeC-CCCEEEEEE----------------cCCeEEEEECCCCeEEEeccCCC----------
Q 003279 755 GECIHELSCTGNKFHSCVFHP-TFPSLLVIG----------------CYETLELWNMTENKTLTLSAHDK---------- 807 (834)
Q Consensus 755 ~~~i~~~~~~~~~I~svafsp-dg~~L~sgs----------------~dg~I~Iwdl~~~~~~~l~~h~~---------- 807 (834)
..+..+. ... +.|+| +|+.|++++ .+..|++||+.+++...+..+..
T Consensus 277 -~~l~~~~----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 350 (396)
T 3c5m_A 277 -EEVMVMP----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQ 350 (396)
T ss_dssp -EEEEECC----SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSS
T ss_pred -EEeeeCC----CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcccccccccc
Confidence 2222221 233 89999 999887755 23689999999887766665554
Q ss_pred -CeEEEEEeCCCCEEEEEec-CCcEEEe
Q 003279 808 -LVSSLAASTVNGMVASASH-DKCVKIW 833 (834)
Q Consensus 808 -~V~~lafspdg~~LaSgs~-DG~I~IW 833 (834)
.+..++|+|||+.|+.++. ++...||
T Consensus 351 ~~~~~~~~s~dg~~l~~~s~~~~~~~l~ 378 (396)
T 3c5m_A 351 ITHPHPSFTPNDDGVLFTSDFEGVPAIY 378 (396)
T ss_dssp TTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred CCCCCceEccCCCeEEEEecCCCCceEE
Confidence 2667899999998887764 5666665
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.83 E-value=2.5e-18 Score=186.47 Aligned_cols=273 Identities=10% Similarity=0.056 Sum_probs=189.0
Q ss_pred cCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCC-CCeEEEEEcCCCCEEEE-EeCCCcEE
Q 003279 500 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLAT-GGHDKKAV 577 (834)
Q Consensus 500 ~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~-~~V~sl~fSpdg~~Las-gs~Dg~I~ 577 (834)
.....++++++.++.|.+|+.... . .+..+..+. ..+..++|+|||+++++ +..++.|.
T Consensus 8 ~~~~~~~v~~~~~~~v~~~d~~~~----------------~---~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~ 68 (349)
T 1jmx_B 8 KAGHEYMIVTNYPNNLHVVDVASD----------------T---VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIY 68 (349)
T ss_dssp CTTCEEEEEEETTTEEEEEETTTT----------------E---EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEE
T ss_pred cCCCEEEEEeCCCCeEEEEECCCC----------------c---EEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEE
Confidence 344567888888999999965322 1 122333222 25788999999986654 45689999
Q ss_pred EEeCCCCeEEEEeccCC------CCeEEEEECCCCCEEEEEeCC------------CeEEEEecCCCCc--eeeeeccCC
Q 003279 578 LWCTESFTVKSTLEEHT------QWITDVRFSPSLSRLATSSAD------------RTVRVWDTENPDY--SLRTFTGHS 637 (834)
Q Consensus 578 IWd~~t~~~~~~l~~h~------~~I~~l~fspdg~~Latgs~D------------g~I~IWDl~s~~~--~i~~~~~h~ 637 (834)
+||+.+++.+..+..+. ..+.+++|+|++++|++++.+ +.|.+||+.++.. .+..+. +.
T Consensus 69 ~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~ 147 (349)
T 1jmx_B 69 GIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MP 147 (349)
T ss_dssp EEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CC
T ss_pred EEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CC
Confidence 99999999887775332 337899999999999998865 8999999987432 122333 34
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCC-------------------------CeeEEEEecCCC
Q 003279 638 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-------------------------GATQMRFQPRLG 692 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~-------------------------~i~~l~~sp~g~ 692 (834)
..+.+++|+|++. +++ ++ +.|++||+.+++.+..+.... ....+++++++.
T Consensus 148 ~~~~~~~~s~dg~-l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 223 (349)
T 1jmx_B 148 RQVYLMRAADDGS-LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDK 223 (349)
T ss_dssp SSCCCEEECTTSC-EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----
T ss_pred CcccceeECCCCc-EEE-cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCc
Confidence 4689999999988 654 43 349999999998887765432 233455554432
Q ss_pred EEEEEEcC-CeEEEEECCCCeE-EEEEeCCCCCEEEEEEcC-CCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003279 693 RILAAAIE-NYISILDVETQVC-RLKLQGHKNQVHSVCWNT-SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFH 769 (834)
Q Consensus 693 ~ll~~s~d-g~I~iwDl~t~~~-~~~l~~h~~~I~sl~~sp-dg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 769 (834)
........ ..+..+|..+++. ...+..+...+.+++|+| ++++++++ ++.|++||+.++ +.+..+.. ...+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~---~~~~~~~~-~~~~~ 298 (349)
T 1jmx_B 224 QDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQR---KLIKAANL-DHTYY 298 (349)
T ss_dssp ---CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTT---EEEEEEEC-SSCCC
T ss_pred CCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccC---eEEEEEcC-CCCcc
Confidence 11111111 1222355555432 222333566789999999 99999988 889999999887 55555543 34577
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE
Q 003279 770 SCVFHPTFPSLLVIGCYETLELWNMTENKTLT 801 (834)
Q Consensus 770 svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~ 801 (834)
+++|+|++++|++++.++.|++||+.+++.+.
T Consensus 299 ~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~ 330 (349)
T 1jmx_B 299 CVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK 330 (349)
T ss_dssp EEEECSSSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred ceEECCCCCEEEEecCCCeEEEEeccccceee
Confidence 89999999999998888999999999988773
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.82 E-value=2.2e-19 Score=216.58 Aligned_cols=274 Identities=11% Similarity=0.028 Sum_probs=189.5
Q ss_pred CeEEEEEcCCCCEEEEEeC---------CCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC
Q 003279 554 KVESCHFSPDGKLLATGGH---------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~---------Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 624 (834)
.|.+++|||||++||+++. ++.|++||+.+++.+... .....+.+++|+|||+.|+++. ++.|++||+.
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~ 138 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP 138 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence 4899999999999999876 789999999998773111 1135689999999999999986 7899999998
Q ss_pred CCCceeeeeccCCCCe-----------------EEEEEccCCCcEEEEEeCCC---------------------------
Q 003279 625 NPDYSLRTFTGHSTTV-----------------MSLDFHPSKEDLLCSCDNNS--------------------------- 660 (834)
Q Consensus 625 s~~~~i~~~~~h~~~V-----------------~sl~fspdg~~llasgs~Dg--------------------------- 660 (834)
++.....+..++...| .+++|+|||+.++++...++
T Consensus 139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g 218 (719)
T 1z68_A 139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG 218 (719)
T ss_dssp TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence 7664222223333322 48999999987665543322
Q ss_pred ------cEEEEECCCCcee---eE-----e-ecCCCeeEEEEecCCCEEEEEEcC----CeEEEEE----CCCCeEEEEE
Q 003279 661 ------EIRYWSINNGSCA---GV-----F-KCQSGATQMRFQPRLGRILAAAIE----NYISILD----VETQVCRLKL 717 (834)
Q Consensus 661 ------~I~lwDl~s~~~i---~~-----~-~~~~~i~~l~~sp~g~~ll~~s~d----g~I~iwD----l~t~~~~~~l 717 (834)
.|++||+.+++.. .. + .+...+..++|+|++..+++.... ..|.+|| +.++++...+
T Consensus 219 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~ 298 (719)
T 1z68_A 219 AKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQ 298 (719)
T ss_dssp SCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGG
T ss_pred CCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEE
Confidence 7889999987753 11 1 123357899999996655554332 2488999 8877665444
Q ss_pred ----eCCCCCEE-----EEEEcCCCCEEEE--Ee-CC--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003279 718 ----QGHKNQVH-----SVCWNTSGEYLAS--VS-DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 783 (834)
Q Consensus 718 ----~~h~~~I~-----sl~~spdg~~Las--gs-Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sg 783 (834)
.+|...+. ++.|+|||+.|+. +. ++ .|++||+.++. ...+..+...+..+.++ ++..|+..
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~----~~~lt~~~~~v~~~~~~-d~~~i~~~ 373 (719)
T 1z68_A 299 EHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN----AIQITSGKWEAINIFRV-TQDSLFYS 373 (719)
T ss_dssp EEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT----CEECSCSSSCEEEEEEE-CSSEEEEE
T ss_pred ecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc----eEecccCceEEEEEEEE-eCCEEEEE
Confidence 46777776 8899999996554 33 44 67777876653 33444555667777777 88888888
Q ss_pred EcC-----CeEEEEECC--CC--eEEEec----cCCCCeEEEEEeCCCCEEEE-EecC--CcEEEeC
Q 003279 784 GCY-----ETLELWNMT--EN--KTLTLS----AHDKLVSSLAASTVNGMVAS-ASHD--KCVKIWK 834 (834)
Q Consensus 784 s~d-----g~I~Iwdl~--~~--~~~~l~----~h~~~V~~lafspdg~~LaS-gs~D--G~I~IWd 834 (834)
+.+ +.+++|.+. ++ +...+. +|...+..+.|+|++++|+. ++.+ ..+.+||
T Consensus 374 ~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d 440 (719)
T 1z68_A 374 SNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHD 440 (719)
T ss_dssp ESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEEC
T ss_pred EecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEE
Confidence 765 667777664 34 223332 26677889999999987664 4333 3466664
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.81 E-value=2e-17 Score=183.14 Aligned_cols=246 Identities=12% Similarity=0.074 Sum_probs=175.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeEEEEecc-CCCCeEEEEECCCCCE--EEEEe-------------
Q 003279 551 STSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEE-HTQWITDVRFSPSLSR--LATSS------------- 613 (834)
Q Consensus 551 H~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~-t~~~~~~l~~-h~~~I~~l~fspdg~~--Latgs------------- 613 (834)
+...+..++|+|||++|++++.+ .|.+|++. +++....... ..+.+.+++|+|++++ +++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 44568899999999999999888 99999997 7776543321 1123667999999994 45553
Q ss_pred CCCeEEEEecCCCCceeeeec----cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC-CCceee--Eee---cCCCee
Q 003279 614 ADRTVRVWDTENPDYSLRTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAG--VFK---CQSGAT 683 (834)
Q Consensus 614 ~Dg~I~IWDl~s~~~~i~~~~----~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~-s~~~i~--~~~---~~~~i~ 683 (834)
.++.+.+|++.........+. .+...+.+++|+|+|+.++++...++.|++||+. +++... .+. +...+.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 689999999974332222222 2556799999999998666554457899999998 676532 333 145689
Q ss_pred EEEEecCCCEEEEEEc-CCeEEEEECC--CCeEE---EEEeC-------CCC------CEEEEE-EcCCCCEEEEEe--C
Q 003279 684 QMRFQPRLGRILAAAI-ENYISILDVE--TQVCR---LKLQG-------HKN------QVHSVC-WNTSGEYLASVS--D 741 (834)
Q Consensus 684 ~l~~sp~g~~ll~~s~-dg~I~iwDl~--t~~~~---~~l~~-------h~~------~I~sl~-~spdg~~Lasgs--D 741 (834)
.++|+|+++++++++. ++.|.+|++. +++.. ..+.. |.. .+.+++ |+|||++|+++. +
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 9999999999988876 6899999765 55542 12221 122 488999 999999887765 3
Q ss_pred C-----eEEEEEcC-CCCCceeEE-EeecCCCceEEEEEeC---CCCEEEEEEcC-CeEEEEECCCCe
Q 003279 742 E-----LVRVWSIG-SGSKGECIH-ELSCTGNKFHSCVFHP---TFPSLLVIGCY-ETLELWNMTENK 798 (834)
Q Consensus 742 g-----~I~IwDl~-s~~~~~~i~-~~~~~~~~I~svafsp---dg~~L~sgs~d-g~I~Iwdl~~~~ 798 (834)
+ .|.+|++. ++. ...+. ....+...+..++|+| +|++|++++.+ +.|.+|+++...
T Consensus 277 ~~~~~~~i~v~~~~~~g~-~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGS-IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp STTSCCEEEEEEECTTSC-EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred CCCCCCeEEEEEECCCCC-EEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 3 89999996 442 12111 2333444567789999 89999998875 799999987763
No 163
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.81 E-value=8.7e-19 Score=206.21 Aligned_cols=229 Identities=10% Similarity=0.068 Sum_probs=177.6
Q ss_pred CCCeEEEEECCCCCEEEEEeC-CCeEEEEecCCCCceeeeeccCC-CCeEEEEEccCCCcEEEEEeC---CCcEEEEECC
Q 003279 594 TQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDN---NSEIRYWSIN 668 (834)
Q Consensus 594 ~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~s~~~~i~~~~~h~-~~V~sl~fspdg~~llasgs~---Dg~I~lwDl~ 668 (834)
..+|++++|+|||++||+++. ||++.||++..+. ...+..|. ..|.+++|+|+ .++++++. +....+|.+.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~--~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE--TVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE--EEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCC--cEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEe
Confidence 457999999999999999887 9999999996543 44455555 68999999998 57777764 4445555443
Q ss_pred C---CceeeEeecCCCeeEEEEecCCCE-EEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C--
Q 003279 669 N---GSCAGVFKCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-- 741 (834)
Q Consensus 669 s---~~~i~~~~~~~~i~~l~~sp~g~~-ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-D-- 741 (834)
. +... .+.....+...+|+|+++. +++.+.++.+.+||+.+++.......+. .+++|+|||++|++++ +
T Consensus 97 ~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~ 172 (582)
T 3o4h_A 97 TSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGG 172 (582)
T ss_dssp TTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEET
T ss_pred ccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCC
Confidence 2 2222 3434445667799998865 4455556667799999987665554333 7899999999999776 5
Q ss_pred --CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCeEEEeccCCCCeEEEE----
Q 003279 742 --ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLTLSAHDKLVSSLA---- 813 (834)
Q Consensus 742 --g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg--~I~Iwdl~~~~~~~l~~h~~~V~~la---- 813 (834)
..|++||+.++. ...+..+...+..++|+|||+.|+++..++ .|++||+.+++...+..|...+..++
T Consensus 173 ~~~~i~~~d~~~g~----~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 248 (582)
T 3o4h_A 173 GRVSLFTSNLSSGG----LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAI 248 (582)
T ss_dssp TEEEEEEEETTTCC----CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEE
T ss_pred CCeEEEEEcCCCCC----ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccc
Confidence 689999998873 235566778899999999999999888888 89999999988876667777777777
Q ss_pred ----EeCCCCEEEEEecCCcEEEeC
Q 003279 814 ----ASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 814 ----fspdg~~LaSgs~DG~I~IWd 834 (834)
|+|||.++++++.||.++||+
T Consensus 249 ~~~~~spdg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 249 TWLGYLPDGRLAVVARREGRSAVFI 273 (582)
T ss_dssp EEEEECTTSCEEEEEEETTEEEEEE
T ss_pred cceeEcCCCcEEEEEEcCCcEEEEE
Confidence 999999999999999999995
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.79 E-value=1.1e-17 Score=203.08 Aligned_cols=266 Identities=13% Similarity=0.078 Sum_probs=192.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCC-----eEEEEECCCCCEEEEEeCC---------CeE
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----ITDVRFSPSLSRLATSSAD---------RTV 618 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~-----I~~l~fspdg~~Latgs~D---------g~I 618 (834)
....++.|+|||++|+++ |+.|++||+.+++....+.+|... ..++.|+|||++|++++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 346689999999999886 899999999999988888777643 2448899999999999876 566
Q ss_pred EEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC-------------------
Q 003279 619 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------------- 679 (834)
Q Consensus 619 ~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~------------------- 679 (834)
.+||+.++. ...+..|...+..++|+|||+.++++ .++.|++||+.++.........
T Consensus 95 ~~~d~~~~~--~~~l~~~~~~~~~~~~SPdG~~la~~--~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 95 DIYDLNKRQ--LITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEEETTTTE--ECCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred EEEECCCCc--EEEcccCCCcceeeEECCCCCEEEEE--ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence 799999865 44566778889999999999977655 3789999999988755432211
Q ss_pred CCeeEEEEecCCCEEEEEEcCC------------------------------------eEEEEECCC---Ce--EEEEEe
Q 003279 680 SGATQMRFQPRLGRILAAAIEN------------------------------------YISILDVET---QV--CRLKLQ 718 (834)
Q Consensus 680 ~~i~~l~~sp~g~~ll~~s~dg------------------------------------~I~iwDl~t---~~--~~~~l~ 718 (834)
.....+.|+|||++|+.+..|. .|++||+.+ +. ....+.
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~ 250 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT 250 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence 1123489999999999876321 588899998 72 223343
Q ss_pred ------CCCCCEEEEEEcCCCCEEEEEe--C---CeEEEEEcCCCCC---ceeEEEe--ecCCCce-----EEEEEeCCC
Q 003279 719 ------GHKNQVHSVCWNTSGEYLASVS--D---ELVRVWSIGSGSK---GECIHEL--SCTGNKF-----HSCVFHPTF 777 (834)
Q Consensus 719 ------~h~~~I~sl~~spdg~~Lasgs--D---g~I~IwDl~s~~~---~~~i~~~--~~~~~~I-----~svafspdg 777 (834)
+|...+..++|+|||++++... + ..|++||+.++.. ...+..+ ..+...+ ..++|+|||
T Consensus 251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG 330 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG 330 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC
Confidence 3777899999999999776654 2 2799999998741 0001111 2333333 367899999
Q ss_pred CEEE-EEEc-CC--eEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEe
Q 003279 778 PSLL-VIGC-YE--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 778 ~~L~-sgs~-dg--~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs 825 (834)
+.|+ ..+. +| .|++||+.+++...+......|..+.+ +|++.|+..+
T Consensus 331 ~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-~d~~~i~f~~ 381 (740)
T 4a5s_A 331 NSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDYLYYIS 381 (740)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEE-ECSSEEEEEE
T ss_pred CEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEE-EeCCEEEEEE
Confidence 9877 5554 33 799999999888777766667776643 4466555443
No 165
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.78 E-value=8.1e-18 Score=191.43 Aligned_cols=212 Identities=14% Similarity=0.157 Sum_probs=160.1
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC---------ceee-----eeccCCCC
Q 003279 574 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---------YSLR-----TFTGHSTT 639 (834)
Q Consensus 574 g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~---------~~i~-----~~~~h~~~ 639 (834)
+.|++|+.... .+...++.+++++++.+|++++.|+ |+||+..... ..+. ....+...
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 46888864321 2345689999999999999999988 8888754210 0011 11235678
Q ss_pred eEEEEEccCCCcEEE---EEeCCCcEEEEECCCC--------cee---eEee-cCCCeeEEEEecC-CCEEEEEEcCCeE
Q 003279 640 VMSLDFHPSKEDLLC---SCDNNSEIRYWSINNG--------SCA---GVFK-CQSGATQMRFQPR-LGRILAAAIENYI 703 (834)
Q Consensus 640 V~sl~fspdg~~lla---sgs~Dg~I~lwDl~s~--------~~i---~~~~-~~~~i~~l~~sp~-g~~ll~~s~dg~I 703 (834)
|.+++|+|++..+++ +++.|+.|++||+.++ +.+ ..+. +...|.+++|+|+ +..|++++.||.|
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v 174 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence 999999999886665 7888999999998754 222 2222 4577999999998 7889999999999
Q ss_pred EEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-------CCceEEEEEeC
Q 003279 704 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-------GNKFHSCVFHP 775 (834)
Q Consensus 704 ~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-------~~~I~svafsp 775 (834)
++||++++..+....+|...|.+++|+|+|++|++++ |+.|++||++ + .....+..+ ...+.+++|++
T Consensus 175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~---~~~~~~~~~~~~~~~~~~~v~~v~w~~ 250 (434)
T 2oit_A 175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-L---QEKKVIPCPPFYESDHPVRVLDVLWIG 250 (434)
T ss_dssp EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-C---CEEEEECCCTTCCTTSCEEEEEEEEEE
T ss_pred EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-C---cccccccCCcccCCCCceeEEEEEEec
Confidence 9999999987777778999999999999999999999 9999999998 3 233333322 23789999999
Q ss_pred CCCEEEEEE-cCC------eEEEEECCCC
Q 003279 776 TFPSLLVIG-CYE------TLELWNMTEN 797 (834)
Q Consensus 776 dg~~L~sgs-~dg------~I~Iwdl~~~ 797 (834)
++.++++.+ .+| .+++|++.+.
T Consensus 251 ~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 251 TYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CceEEEEEccCCCccCCCCceEEEEeccC
Confidence 988776543 332 4999999764
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.78 E-value=1.8e-17 Score=197.74 Aligned_cols=281 Identities=10% Similarity=0.053 Sum_probs=198.7
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEE--eCCCcEEEEeCCCCeEEEEeccCCCCeE---------EEEEC--CCCCE-EEEE
Q 003279 547 LIPASTSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWIT---------DVRFS--PSLSR-LATS 612 (834)
Q Consensus 547 ~l~gH~~~V~sl~fSpdg~~Lasg--s~Dg~I~IWd~~t~~~~~~l~~h~~~I~---------~l~fs--pdg~~-Latg 612 (834)
.+.+|...|.+++|++++-++++. +.++...||....+.....+..|...|. .+.|+ ||++. |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 456788999999999887666666 5578899998655555667777776666 66665 99998 7766
Q ss_pred eC-CCeEEEEecC--C-CCceeeeecc-----CCCCeEEEEEccCCCcEEEEEeCC---------CcEEEEECCC-----
Q 003279 613 SA-DRTVRVWDTE--N-PDYSLRTFTG-----HSTTVMSLDFHPSKEDLLCSCDNN---------SEIRYWSINN----- 669 (834)
Q Consensus 613 s~-Dg~I~IWDl~--s-~~~~i~~~~~-----h~~~V~sl~fspdg~~llasgs~D---------g~I~lwDl~s----- 669 (834)
+. +..|++|++. . +. ...+.. |...+.+++|+|||+.++++.... ..|++||+.+
T Consensus 98 ~~~~~~l~~~~~~~~g~~~--~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 175 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAV--PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD 175 (662)
T ss_dssp BTTTCCEEEECTTSTTCCC--CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred ECCCCeEEEEcCCCCCCCC--CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence 54 5667777765 2 32 344444 667889999999998766554321 5899999998
Q ss_pred -CceeeEe-ecCCCeeEEEEecCCCEEEEEEcCC--------eEEEEECC-CC---eEEEEEeCCCCCEEEEEEcCCCCE
Q 003279 670 -GSCAGVF-KCQSGATQMRFQPRLGRILAAAIEN--------YISILDVE-TQ---VCRLKLQGHKNQVHSVCWNTSGEY 735 (834)
Q Consensus 670 -~~~i~~~-~~~~~i~~l~~sp~g~~ll~~s~dg--------~I~iwDl~-t~---~~~~~l~~h~~~I~sl~~spdg~~ 735 (834)
+...... .....+..++|+|||++|++++.++ .|++||+. ++ .......+|...+..++|+|||++
T Consensus 176 ~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l 255 (662)
T 3azo_A 176 RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL 255 (662)
T ss_dssp GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence 6655444 4455677899999999999888653 79999999 57 444444556788999999999997
Q ss_pred EEEEe-CC--eEEEEEcCCCCCceeEEEeecCCCc--------eEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCeEEEe
Q 003279 736 LASVS-DE--LVRVWSIGSGSKGECIHELSCTGNK--------FHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTL 802 (834)
Q Consensus 736 Lasgs-Dg--~I~IwDl~s~~~~~~i~~~~~~~~~--------I~svafspdg~~L~sgs~dg~I~Iw--dl~~~~~~~l 802 (834)
++++. ++ .|++||+.++. .......+... +..++|++++..++++.. +.++|| |+.+++...+
T Consensus 256 ~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l 331 (662)
T 3azo_A 256 IVATDRTGWWNLHRVDPATGA---ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDA 331 (662)
T ss_dssp EEEECTTSSCEEEEECTTTCC---EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEEC
T ss_pred EEEECCCCCeEEEEEECCCCc---eeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEe
Confidence 77776 67 66667765552 22212221111 457899999998888888 877777 7777887777
Q ss_pred ccCCCCeEEE-EEeCCCCEEEEEecCCcEEEe
Q 003279 803 SAHDKLVSSL-AASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 803 ~~h~~~V~~l-afspdg~~LaSgs~DG~I~IW 833 (834)
..|...+..+ +++.+.-++++++.+....||
T Consensus 332 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 332 AGPWTEWAATLTVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp CSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence 7888888877 554433344555566555554
No 167
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.78 E-value=4.5e-17 Score=197.64 Aligned_cols=295 Identities=14% Similarity=0.089 Sum_probs=198.4
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCC-----eEEEEEcCCCCEEEEEeCC-----
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK-----VESCHFSPDGKLLATGGHD----- 573 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~-----V~sl~fSpdg~~Lasgs~D----- 573 (834)
.+++++ |+.|.+|...... ....+.+|... ...++|||||++|++++.+
T Consensus 29 ~~~~~~--~~~i~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r 87 (740)
T 4a5s_A 29 EYLYKQ--ENNILVFNAEYGN-------------------SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWR 87 (740)
T ss_dssp EEEEEE--TTEEEEEETTTCC-------------------EEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSS
T ss_pred cEEEEc--CCcEEEEECCCCc-------------------eEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEE
Confidence 567765 7888888654331 12334555432 3458899999999998876
Q ss_pred ----CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCe---------
Q 003279 574 ----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV--------- 640 (834)
Q Consensus 574 ----g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V--------- 640 (834)
+.+.+||+.+++.. .+..|...+..++|+|||+.||.++ |+.|++||+.++.....+..++...+
T Consensus 88 ~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~ 165 (740)
T 4a5s_A 88 HSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY 165 (740)
T ss_dssp SCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred EccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccc
Confidence 56779999998865 4667888999999999999999884 68999999987664333333333323
Q ss_pred --------EEEEEccCCCcEEEEEeCCC-----------------------------------cEEEEECCC---Cc---
Q 003279 641 --------MSLDFHPSKEDLLCSCDNNS-----------------------------------EIRYWSINN---GS--- 671 (834)
Q Consensus 641 --------~sl~fspdg~~llasgs~Dg-----------------------------------~I~lwDl~s---~~--- 671 (834)
..+.|+|||+.+++...+++ .|++||+.+ ++
T Consensus 166 ~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~ 245 (740)
T 4a5s_A 166 EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT 245 (740)
T ss_dssp HHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC
T ss_pred cchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcce
Confidence 35899999997776543222 588899988 73
Q ss_pred eeeEee------cCCCeeEEEEecCCCEEEEEEcC----CeEEEEECCCCe----EEE--EE--eCCCCCEE-----EEE
Q 003279 672 CAGVFK------CQSGATQMRFQPRLGRILAAAIE----NYISILDVETQV----CRL--KL--QGHKNQVH-----SVC 728 (834)
Q Consensus 672 ~i~~~~------~~~~i~~l~~sp~g~~ll~~s~d----g~I~iwDl~t~~----~~~--~l--~~h~~~I~-----sl~ 728 (834)
...... +...+..++|+|+++.++..... ..|.+||+.+++ +.. .+ ..|...|. .+.
T Consensus 246 ~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~ 325 (740)
T 4a5s_A 246 SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPH 325 (740)
T ss_dssp EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCE
T ss_pred EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCce
Confidence 332221 23347889999999866665442 379999998876 221 11 44665554 789
Q ss_pred EcCCCCEEE-EEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-------CeEEEEECCC
Q 003279 729 WNTSGEYLA-SVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-------ETLELWNMTE 796 (834)
Q Consensus 729 ~spdg~~La-sgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d-------g~I~Iwdl~~ 796 (834)
|+|||+.|+ ..+ +| .|++||+.++. . ..+......+..+.. ++++.|+..+.. ..|+..++.+
T Consensus 326 fspDG~~l~~~~s~~~G~~~l~~~~~~~~~---~-~~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g 400 (740)
T 4a5s_A 326 FTLDGNSFYKIISNEEGYRHICYFQIDKKD---C-TFITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLID 400 (740)
T ss_dssp ECTTSSEEEEEEECTTSCEEEEEEETTCSS---C-EESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTE
T ss_pred EcCCCCEEEEEEEcCCCceEEEEEECCCCc---e-EecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCC
Confidence 999999877 565 44 79999988652 2 233334445555442 447777766654 2566667766
Q ss_pred CeEE-Eecc----CCCCeEEEEEeCCCCEEEEEec
Q 003279 797 NKTL-TLSA----HDKLVSSLAASTVNGMVASASH 826 (834)
Q Consensus 797 ~~~~-~l~~----h~~~V~~lafspdg~~LaSgs~ 826 (834)
+... .+.. ....+..+.|+|++++++....
T Consensus 401 ~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s 435 (740)
T 4a5s_A 401 YTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCS 435 (740)
T ss_dssp EEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEEC
T ss_pred CCcceeeccccCCCCCceEEEEECCCCCEEEEEeC
Confidence 5543 3322 2467889999999997765543
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.77 E-value=1.3e-16 Score=176.88 Aligned_cols=262 Identities=11% Similarity=0.115 Sum_probs=193.5
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEeccC------CCCeEEEEECCCCCEEE
Q 003279 547 LIPASTSKVESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEH------TQWITDVRFSPSLSRLA 610 (834)
Q Consensus 547 ~l~gH~~~V~sl~fSpdg~~Lasgs~----------Dg~I~IWd~~t~~~~~~l~~h------~~~I~~l~fspdg~~La 610 (834)
.+..+..+ .++|+|||++|++++. ++.|.+||..+++.+..+... ......++|+||+++|+
T Consensus 46 ~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~ 123 (361)
T 2oiz_A 46 MVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIV 123 (361)
T ss_dssp EEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEE
T ss_pred EecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEE
Confidence 44445444 8999999999998863 678999999999988877532 34567899999999999
Q ss_pred EEeC--CCeEEEEecCCCCceeee-eccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-CceeeE------eecCC
Q 003279 611 TSSA--DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGV------FKCQS 680 (834)
Q Consensus 611 tgs~--Dg~I~IWDl~s~~~~i~~-~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s-~~~i~~------~~~~~ 680 (834)
++.. +++|.+||+.+.+. +.. +. +. ....+.+.|++...+++.+.||.+.+|++.. ++.... +....
T Consensus 124 v~n~~~~~~v~v~d~~~~~~-~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~ 200 (361)
T 2oiz_A 124 LQNASPATSIGIVDVAKGDY-VEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKD 200 (361)
T ss_dssp EEEESSSEEEEEEETTTTEE-EEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTT
T ss_pred EECCCCCCeEEEEECCCCcE-EEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCC
Confidence 8874 58999999998653 444 33 22 2234667888767777888899999999865 554422 12222
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEEeC------CC----CCEEEEEEcCCCCEEEEEe--------
Q 003279 681 GATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQG------HK----NQVHSVCWNTSGEYLASVS-------- 740 (834)
Q Consensus 681 ~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~--~~~~l~~------h~----~~I~sl~~spdg~~Lasgs-------- 740 (834)
....+.+.+++..++..+.++.|+++|+.... ....+.. +. .....++|+|++..++++.
T Consensus 201 ~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~ 280 (361)
T 2oiz_A 201 DPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT 280 (361)
T ss_dssp SCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC
T ss_pred CceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc
Confidence 22334456777888888889999999997543 2222211 11 1111378999988777653
Q ss_pred ----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC--eEEEe-ccCCCCeEEEE
Q 003279 741 ----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN--KTLTL-SAHDKLVSSLA 813 (834)
Q Consensus 741 ----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~--~~~~l-~~h~~~V~~la 813 (834)
.+.|.+||+.+. +.+..+..+. +..++|+|+|++|++++. +.|.+||..++ +++.. ..+......++
T Consensus 281 ~~~~~~~v~viD~~t~---~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~ 354 (361)
T 2oiz_A 281 HKFPAAEIWVMDTKTK---QRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQ 354 (361)
T ss_dssp TTCCCSEEEEEETTTT---EEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEE
T ss_pred ccCCCceEEEEECCCC---cEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEE
Confidence 237999999988 7788887766 999999999999988876 99999999999 88855 57888899999
Q ss_pred EeCCCC
Q 003279 814 ASTVNG 819 (834)
Q Consensus 814 fspdg~ 819 (834)
++|+|+
T Consensus 355 ~~p~G~ 360 (361)
T 2oiz_A 355 FHPVGG 360 (361)
T ss_dssp ECCCSC
T ss_pred ecCCCC
Confidence 999985
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.76 E-value=1.6e-16 Score=176.13 Aligned_cols=263 Identities=8% Similarity=0.051 Sum_probs=189.2
Q ss_pred CCCEEEEEe------CCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC----------CCeEEEEecCCC
Q 003279 563 DGKLLATGG------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENP 626 (834)
Q Consensus 563 dg~~Lasgs------~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~----------Dg~I~IWDl~s~ 626 (834)
+++++++.. .|+.|++||..+++.+..+..+..+ .++|+||+++|++++. ++.|.+||+.+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 556666553 3679999999999999888776655 8999999999998863 678999999876
Q ss_pred Cceeeeecc------CCCCeEEEEEccCCCcEEEEEeC-CCcEEEEECCCCceeeE-eecCCCeeEEEEecCC-CEEEEE
Q 003279 627 DYSLRTFTG------HSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGV-FKCQSGATQMRFQPRL-GRILAA 697 (834)
Q Consensus 627 ~~~i~~~~~------h~~~V~sl~fspdg~~llasgs~-Dg~I~lwDl~s~~~i~~-~~~~~~i~~l~~sp~g-~~ll~~ 697 (834)
+. +..+.. +......++|+|++++++++... ++.|.+||+.+++.+.. +... ....+.+.|++ ..+++.
T Consensus 92 ~~-~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~~~~v~~~p~~~~~~~~~ 169 (361)
T 2oiz_A 92 TF-EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-GCWSVIPQPNRPRSFMTI 169 (361)
T ss_dssp CE-EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-TEEEEEECTTSSSEEEEE
T ss_pred cE-EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-CcceeEEcCCCCeeEEEE
Confidence 54 444332 23457789999999877766544 68999999999988877 6553 33345677765 677888
Q ss_pred EcCCeEEEEECCC-CeEEEEE------eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC----
Q 003279 698 AIENYISILDVET-QVCRLKL------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG---- 765 (834)
Q Consensus 698 s~dg~I~iwDl~t-~~~~~~l------~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~---- 765 (834)
+.||.+.+|++.. ++..... ..+..++ .+.+++++..++..+ ++.|+++|+..... ..+..+....
T Consensus 170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~-~~~~~~~~~~~~~~ 247 (361)
T 2oiz_A 170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEV-KVDGPWSLLNDEDK 247 (361)
T ss_dssp ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSC-EEEEEEESCCHHHH
T ss_pred CCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCc-eecccccccCcccc
Confidence 8899999999865 5544221 1122222 334466777777666 88999999976532 2222221100
Q ss_pred ------CceEEEEEeCCCCEEEEEEc-----------CCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecC
Q 003279 766 ------NKFHSCVFHPTFPSLLVIGC-----------YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 766 ------~~I~svafspdg~~L~sgs~-----------dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~D 827 (834)
.....++|+|++..++++.. .+.|.+||+.+++.+ .+..+. +.+++|+|||++|++++.
T Consensus 248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~- 324 (361)
T 2oiz_A 248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG- 324 (361)
T ss_dssp HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-
T ss_pred ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-
Confidence 11123689999998888754 348999999999988 444554 999999999999998887
Q ss_pred CcEEEeC
Q 003279 828 KCVKIWK 834 (834)
Q Consensus 828 G~I~IWd 834 (834)
+.|.|||
T Consensus 325 ~~v~v~D 331 (361)
T 2oiz_A 325 GNVNVYD 331 (361)
T ss_dssp SCEEEEE
T ss_pred CeEEEEE
Confidence 9999996
No 170
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.75 E-value=4.8e-16 Score=168.65 Aligned_cols=268 Identities=8% Similarity=0.032 Sum_probs=192.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeee
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~ 632 (834)
..|.+++|++++..++..+.++.+++| .++....+..+...+.+++|++++++++++..++.|.+||..++.. ...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~-~~~ 81 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-KRP 81 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE-EEE
Confidence 347888999998888877888999999 4556667777778889999999999888888899999999987653 233
Q ss_pred eccCCCCeEEEEEccCCCcEEEEEeCC----CcEEEEECCCCceeeEee---cCCCeeEEEEecCCCEEEEEEc------
Q 003279 633 FTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAI------ 699 (834)
Q Consensus 633 ~~~h~~~V~sl~fspdg~~llasgs~D----g~I~lwDl~s~~~i~~~~---~~~~i~~l~~sp~g~~ll~~s~------ 699 (834)
...+...+.+++|++++. +++++..+ +.|.+||..++.....+. ....+..++++|++..+++...
T Consensus 82 ~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP 160 (333)
T ss_dssp EECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred eeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence 335667899999999976 55555555 689999998877653332 2346889999999876665543
Q ss_pred CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCC-CCCceeE-----EEeecCCCceEEE
Q 003279 700 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS-GSKGECI-----HELSCTGNKFHSC 771 (834)
Q Consensus 700 dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s-~~~~~~i-----~~~~~~~~~I~sv 771 (834)
.+.|..||..+++..... .+...+.+++|+|++++|+++. ++.|++||+.+ +.....+ ..+.. ...+..+
T Consensus 161 ~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i 238 (333)
T 2dg1_A 161 LGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSC 238 (333)
T ss_dssp CEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEE
T ss_pred CceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CCCCCce
Confidence 356777887765443322 2334578999999998665554 78999999964 2211111 11111 2467889
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCC------CeEEEEEeCCCCEEEEEecC
Q 003279 772 VFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDK------LVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 772 afspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~------~V~~lafspdg~~LaSgs~D 827 (834)
+++++|..+++...++.|.+||........+..+.. .+.+++|++|++.|+.++.+
T Consensus 239 ~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 239 CIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 999999877776677899999985443334433332 68999999998777666555
No 171
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.75 E-value=6.7e-16 Score=168.42 Aligned_cols=239 Identities=15% Similarity=0.114 Sum_probs=181.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCC------------------------CcEEEEeCCCCeEEEEec-cCCCCeEEEEECCCCC
Q 003279 553 SKVESCHFSPDGKLLATGGHD------------------------KKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLS 607 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~D------------------------g~I~IWd~~t~~~~~~l~-~h~~~I~~l~fspdg~ 607 (834)
+.|.+|+++++|+++++...+ +.|.+||..+++.+..+. ++......++++++++
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~ 103 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN 103 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence 569999999999999888777 479999999898887664 4556789999999999
Q ss_pred EEEEEeCCCeEEEEecCCCCceeeee---------ccCCCCeEEEEEccCCCcEEEEEe-CCCcEEEEECCCCceeeEee
Q 003279 608 RLATSSADRTVRVWDTENPDYSLRTF---------TGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFK 677 (834)
Q Consensus 608 ~Latgs~Dg~I~IWDl~s~~~~i~~~---------~~h~~~V~sl~fspdg~~llasgs-~Dg~I~lwDl~s~~~i~~~~ 677 (834)
++++...++.|++||.......+..+ ..+......|+++|++..++++.+ .++.|++|| .++..+..+.
T Consensus 104 l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~ 182 (329)
T 3fvz_A 104 YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWG 182 (329)
T ss_dssp EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEEC
T ss_pred EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEec
Confidence 88888889999999987542234444 234457899999994455776775 689999999 5577776664
Q ss_pred cC-----------CCeeEEEEecCCCEEEEE-EcCCeEEEEECCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEEE----
Q 003279 678 CQ-----------SGATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASV---- 739 (834)
Q Consensus 678 ~~-----------~~i~~l~~sp~g~~ll~~-s~dg~I~iwDl~t~~~~~~l~--~h~~~I~sl~~spdg~~Lasg---- 739 (834)
.. .....++++|+++.++++ ..++.|++||..+++.+..+. .+...+.+++|+| +..+++.
T Consensus 183 ~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~ 261 (329)
T 3fvz_A 183 EESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPY 261 (329)
T ss_dssp EECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCC
T ss_pred cCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEE
Confidence 31 227899999995555555 457899999999888888874 3566889999999 4333332
Q ss_pred ---e-CCeEEEEEcCCCCCceeEEEe---ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 740 ---S-DELVRVWSIGSGSKGECIHEL---SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 740 ---s-Dg~I~IwDl~s~~~~~~i~~~---~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
. +..|++||+.++ ..+..+ ..+...+..++++|+|..+++...++.|++|++..
T Consensus 262 v~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 262 FGDQEPVQGFVMNFSSG---EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp TTCSCCCCEEEEETTTC---CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred eccCCCcEEEEEEcCCC---eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 2 348999999888 555555 35566789999999996666666678999999754
No 172
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.74 E-value=4.8e-16 Score=169.32 Aligned_cols=252 Identities=11% Similarity=0.101 Sum_probs=178.4
Q ss_pred CeEEEEEcCCCCEEEEEe---------CCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC---C--eEE
Q 003279 554 KVESCHFSPDGKLLATGG---------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---R--TVR 619 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs---------~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g--~I~ 619 (834)
.|..+.| ||++||... .++.|++||+.+++... + ..+.+++|+|||++|+.++.+ + .|+
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 3667777 898887653 25689999999877543 3 568899999999999988754 3 477
Q ss_pred EEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeC--------------------------CCcEEEEECCCCcee
Q 003279 620 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--------------------------NSEIRYWSINNGSCA 673 (834)
Q Consensus 620 IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~--------------------------Dg~I~lwDl~s~~~i 673 (834)
+||+.++.. ..+..+.. +.+++|+|+++.+++++.. ...|++||+.+++.+
T Consensus 89 ~~~~~~g~~--~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 89 VADLETLSS--KKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEETTTTEE--EEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEECCCCce--EEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 888876542 33333334 9999999999877766532 257999999988874
Q ss_pred eEeecCCCeeEEEEecCCCEEEEEEcCC---------eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C--
Q 003279 674 GVFKCQSGATQMRFQPRLGRILAAAIEN---------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-- 741 (834)
Q Consensus 674 ~~~~~~~~i~~l~~sp~g~~ll~~s~dg---------~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-D-- 741 (834)
..+... .+..+.|+|++ .++++..++ .|.++| +++.. .+..+ ..+.++ +|+|++|+.++ +
T Consensus 166 ~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~~-~~~~~~--spdg~~l~~~~~~~~ 237 (347)
T 2gop_A 166 EEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEE-KMFEK-VSFYAV--DSDGERILLYGKPEK 237 (347)
T ss_dssp EEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEE-EEEEE-ESEEEE--EECSSCEEEEECCSS
T ss_pred eeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceE-EeccC-cceeeE--CCCCCEEEEEEcccc
Confidence 444434 88899999999 666665432 455556 55543 33334 455544 99999887766 3
Q ss_pred ------CeEEEEEcCCCCCceeEEEeecCCCceEE-EEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEE
Q 003279 742 ------ELVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAA 814 (834)
Q Consensus 742 ------g~I~IwDl~s~~~~~~i~~~~~~~~~I~s-vafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~laf 814 (834)
..|++|| ++ ........+...+.. +.|+ ++ .+++++.++.++|| +.+++...+..+...|.+++|
T Consensus 238 ~~~~~~~~l~~~d--~~---~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~ 309 (347)
T 2gop_A 238 KYMSEHNKLYIYD--GK---EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDV 309 (347)
T ss_dssp SCCCSSCEEEEEC--SS---CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEE
T ss_pred CCccccceEEEEC--CC---ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeee
Confidence 2677777 33 233333344567776 8999 88 88888889999999 877776666677888999999
Q ss_pred eCCCCEEEEEecCCcE-EEe
Q 003279 815 STVNGMVASASHDKCV-KIW 833 (834)
Q Consensus 815 spdg~~LaSgs~DG~I-~IW 833 (834)
+| .++++++.++.. .||
T Consensus 310 s~--~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 310 DE--IVVYLKETATRLRELF 327 (347)
T ss_dssp SS--SEEEEEECSSSCCEEE
T ss_pred eC--cEEEEEcCCCChHHhe
Confidence 99 677777777654 555
No 173
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.73 E-value=1.6e-14 Score=169.35 Aligned_cols=308 Identities=11% Similarity=0.025 Sum_probs=220.5
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC-
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE- 582 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~- 582 (834)
.++++...++.|.+++.... . .+..+... ..+.++.|+|||++|++++.|+.|.+||+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~----------------~---v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~ 227 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTY----------------E---IKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM 227 (567)
T ss_dssp EEEEEETTTTEEEEEETTTC----------------C---EEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred eEEEEeCCCCeEEEEECCCC----------------e---EEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCC
Confidence 45566667777877754322 1 12233322 246789999999999999999999999996
Q ss_pred -CCeEEEEeccCCCCeEEEEEC----CCCCEEEEEeC-CCeEEEEecCCCCceeeeecc----------C-CCCeEEEEE
Q 003279 583 -SFTVKSTLEEHTQWITDVRFS----PSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------H-STTVMSLDF 645 (834)
Q Consensus 583 -t~~~~~~l~~h~~~I~~l~fs----pdg~~Latgs~-Dg~I~IWDl~s~~~~i~~~~~----------h-~~~V~sl~f 645 (834)
+++.+..+.... ....++|+ |||+++++++. ++.|.|+|..+.+. +..+.. | ...+..+.+
T Consensus 228 ~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~-~~~i~~~~~~~~~~~~~p~~rva~i~~ 305 (567)
T 1qks_A 228 KEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILA 305 (567)
T ss_dssp SSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred CCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE-EEEEeccccccccccccCCCceEEEEE
Confidence 888888886544 46799999 69998887765 58999999887654 333321 1 126788999
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCCCcee--eEeecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeC---
Q 003279 646 HPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG--- 719 (834)
Q Consensus 646 spdg~~llasgs~Dg~I~lwDl~s~~~i--~~~~~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~--- 719 (834)
++++..+++....+|.|.++|..+.+.. ..+........+.|+|+++++++++. ++.|.++|+.+++.+..+..
T Consensus 306 s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~ 385 (567)
T 1qks_A 306 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ 385 (567)
T ss_dssp CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred cCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCc
Confidence 9988888888888899999999876433 33344556788999999999988875 68999999999987776653
Q ss_pred --CCCCEEEEEEcCCCC-EEEEEe--CCeEEEEEcCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEEEEEc-----
Q 003279 720 --HKNQVHSVCWNTSGE-YLASVS--DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVIGC----- 785 (834)
Q Consensus 720 --h~~~I~sl~~spdg~-~Lasgs--Dg~I~IwDl~s~~~----~~~i~~~~~~~~~I~svafspdg~~L~sgs~----- 785 (834)
|.+.-..+ ++|++. +++++. ++.|.++|..+... .+.+..+......-..+.++|+++++++...
T Consensus 386 ~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~ 464 (567)
T 1qks_A 386 TPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA 464 (567)
T ss_dssp SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSH
T ss_pred CCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCc
Confidence 33222222 578744 445554 68999999987321 3566777655444455778999999998773
Q ss_pred --CCeEEEEECCCC---------eEEEe------ccCCCCeEEEEEeCCCCEEEEEec-----CCcEEEeC
Q 003279 786 --YETLELWNMTEN---------KTLTL------SAHDKLVSSLAASTVNGMVASASH-----DKCVKIWK 834 (834)
Q Consensus 786 --dg~I~Iwdl~~~---------~~~~l------~~h~~~V~~lafspdg~~LaSgs~-----DG~I~IWd 834 (834)
.+.|.+||+.+. +.+.+ ......+..+.|+++|+.+..+.. ++.|.|+|
T Consensus 465 ~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 465 EISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp HHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred ccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 359999999876 22211 112457899999999997776643 68888875
No 174
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.73 E-value=4.2e-15 Score=157.71 Aligned_cols=237 Identities=10% Similarity=0.154 Sum_probs=176.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec------cCCCCeEEEEE-CCCCCEEEEEeC-CCeEEEE
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE------EHTQWITDVRF-SPSLSRLATSSA-DRTVRVW 621 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~------~h~~~I~~l~f-spdg~~Latgs~-Dg~I~IW 621 (834)
+|-..+.+++++++|+++++...++.|.+||.. ++.+..+. ++...+.++++ .+++.++++... ++.|++|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455678999999999988888889999999977 56666653 24457899999 567766666543 8899999
Q ss_pred ecCCCCceeeeec-cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec---CCCeeEEEEecCCCEEEEE
Q 003279 622 DTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 622 Dl~s~~~~i~~~~-~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~---~~~i~~l~~sp~g~~ll~~ 697 (834)
|.. +.. +..+. .+...+.++++++++. ++++...++.|.+||.. ++.+..+.. ...+..+++++++..+++.
T Consensus 106 d~~-g~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 106 NQY-GQF-VRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp CTT-SCE-EEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred CCC-CcE-EEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence 943 443 34442 3446789999999976 66677778899999965 566665542 2458899999998766666
Q ss_pred EcCCeEEEEECCCCeEEEEEeCC--CCCEEEEEEcCCCCEEEEEe-CC-eEEEEEcCCCCCceeEEEeecCC--CceEEE
Q 003279 698 AIENYISILDVETQVCRLKLQGH--KNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCTG--NKFHSC 771 (834)
Q Consensus 698 s~dg~I~iwDl~t~~~~~~l~~h--~~~I~sl~~spdg~~Lasgs-Dg-~I~IwDl~s~~~~~~i~~~~~~~--~~I~sv 771 (834)
..++.|++||.. +..+..+..+ ...+.+++++++|.++++.. ++ .|.+||.. + ..+..+..+. ..+..+
T Consensus 182 ~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g---~~~~~~~~~~~~~~~~~i 256 (286)
T 1q7f_A 182 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G---QLISALESKVKHAQCFDV 256 (286)
T ss_dssp GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S---CEEEEEEESSCCSCEEEE
T ss_pred CCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-C---CEEEEEcccCCCCcceeE
Confidence 668999999985 4555566433 36789999999999888887 65 99999954 3 3444554433 347899
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCC
Q 003279 772 VFHPTFPSLLVIGCYETLELWNMTEN 797 (834)
Q Consensus 772 afspdg~~L~sgs~dg~I~Iwdl~~~ 797 (834)
+++|+|..+++ +.++.|++|++...
T Consensus 257 ~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 257 ALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EECCCCcEEEE-CCCCeEEEEEcccc
Confidence 99999975554 77899999998654
No 175
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.72 E-value=5.1e-16 Score=171.70 Aligned_cols=245 Identities=12% Similarity=0.102 Sum_probs=169.9
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEE--ECCCCCEEEEE-----------
Q 003279 546 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR--FSPSLSRLATS----------- 612 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~--fspdg~~Latg----------- 612 (834)
....+|...+.++.|+|||+.|++++.++.|++||+.+++....+..+...+.... +++++++++..
T Consensus 74 ~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~ 153 (388)
T 3pe7_A 74 QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLT 153 (388)
T ss_dssp ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC
T ss_pred EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccccccc
Confidence 34456666666788999999999999999999999999988877776766665444 48999988743
Q ss_pred -----------eCCCeEEEEecCCCCceeeeeccCCCCeEEEEEcc-CCCcEEEEEeC-----CCcEEEEECCCCceeeE
Q 003279 613 -----------SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDN-----NSEIRYWSINNGSCAGV 675 (834)
Q Consensus 613 -----------s~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fsp-dg~~llasgs~-----Dg~I~lwDl~s~~~i~~ 675 (834)
..+..|++||+.++. ...+..+...+..++|+| ++..++++... ...|.++|+..+.....
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l 231 (388)
T 3pe7_A 154 DWKKFHEFYFTKPCCRLMRVDLKTGE--STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKV 231 (388)
T ss_dssp SHHHHHHHGGGCCCEEEEEEETTTCC--EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEES
T ss_pred ccchhhhhhccCCcceEEEEECCCCc--eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEe
Confidence 244789999999865 445556677899999999 88766655542 34788899876655444
Q ss_pred eecCC--CeeEEEEecCCCEEEEEEcC-C----eEEEEECCCCeEE--EEEeCCCCC---EEEEEEcCCCCEEEEE----
Q 003279 676 FKCQS--GATQMRFQPRLGRILAAAIE-N----YISILDVETQVCR--LKLQGHKNQ---VHSVCWNTSGEYLASV---- 739 (834)
Q Consensus 676 ~~~~~--~i~~l~~sp~g~~ll~~s~d-g----~I~iwDl~t~~~~--~~l~~h~~~---I~sl~~spdg~~Lasg---- 739 (834)
..... .+..+.|+|+++.|++.+.+ + .|++||+.+++.. ..+.++... ...++|+|||+.|+..
T Consensus 232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 311 (388)
T 3pe7_A 232 KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDD 311 (388)
T ss_dssp CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-------
T ss_pred eeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeec
Confidence 33332 36778999999988665542 2 3999999988643 333321000 1123799999987753
Q ss_pred -----e-CCeEEEEEcCCCCCceeEEEeecCCC-----------ceEEEEEeCCCCEEEEEEc-CC--eEEEEECCC
Q 003279 740 -----S-DELVRVWSIGSGSKGECIHELSCTGN-----------KFHSCVFHPTFPSLLVIGC-YE--TLELWNMTE 796 (834)
Q Consensus 740 -----s-Dg~I~IwDl~s~~~~~~i~~~~~~~~-----------~I~svafspdg~~L~sgs~-dg--~I~Iwdl~~ 796 (834)
. +..|++||+.++ . +..+..+.. .+..++|+|||+.|++++. ++ .|+++++..
T Consensus 312 ~~~~~~~~~~i~~~d~~~~---~-~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 312 SGYKIENDPFLYVFNMKNG---T-QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE 384 (388)
T ss_dssp -----CCCCEEEEEETTTT---E-EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred cccccCCCCEEEEEeccCC---c-eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence 2 558999999886 2 233444444 4778899999998887775 44 455555543
No 176
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.72 E-value=6.1e-15 Score=156.46 Aligned_cols=234 Identities=12% Similarity=0.125 Sum_probs=173.2
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeec------cCCCCeEEEEEccCCCcEEEEEeC-CCcEEE
Q 003279 592 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT------GHSTTVMSLDFHPSKEDLLCSCDN-NSEIRY 664 (834)
Q Consensus 592 ~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~------~h~~~V~sl~fspdg~~llasgs~-Dg~I~l 664 (834)
++-..+.++++++++.++++.+.++.|.+||... .. +..+. ++...+.++++.+.+..++++... ++.|.+
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~-~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RF-KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CE-EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cE-EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 4556789999999999888888899999999873 32 33332 244678999995333446655533 789999
Q ss_pred EECCCCceeeEeec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEEEe
Q 003279 665 WSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS 740 (834)
Q Consensus 665 wDl~s~~~i~~~~~--~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~--~h~~~I~sl~~spdg~~Lasgs 740 (834)
|| .+++.+..+.. ...+..+++++++..+++...++.|.+||.. ++.+..+. .+...+.+++++++|+++++..
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 182 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN 182 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence 99 56777666643 2468899999998866666678899999965 55555554 3456789999999999877776
Q ss_pred -CCeEEEEEcCCCCCceeEEEeecC--CCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCeEEEeccCC--CCeEEEEE
Q 003279 741 -DELVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTLTLSAHD--KLVSSLAA 814 (834)
Q Consensus 741 -Dg~I~IwDl~s~~~~~~i~~~~~~--~~~I~svafspdg~~L~sgs~dg-~I~Iwdl~~~~~~~l~~h~--~~V~~laf 814 (834)
++.|++||... ..+..+... ...+..++++++|..+++...++ .|.+||........+..+. ..+.++++
T Consensus 183 ~~~~i~~~~~~g----~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~ 258 (286)
T 1q7f_A 183 RAHCVKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVAL 258 (286)
T ss_dssp GGTEEEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEE
T ss_pred CCCEEEEEcCCC----CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEE
Confidence 88999999743 344455433 35788999999998777776675 9999997554444444433 34789999
Q ss_pred eCCCCEEEEEecCCcEEEeC
Q 003279 815 STVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 815 spdg~~LaSgs~DG~I~IWd 834 (834)
+|+|+++++ +.|+.|+||+
T Consensus 259 ~~~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 259 MDDGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp ETTTEEEEE-ETTTEEEEEE
T ss_pred CCCCcEEEE-CCCCeEEEEE
Confidence 999987777 6799999995
No 177
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.71 E-value=1e-13 Score=146.68 Aligned_cols=275 Identities=8% Similarity=-0.034 Sum_probs=196.3
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE-eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC
Q 003279 548 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 626 (834)
Q Consensus 548 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~-l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~ 626 (834)
+..+...+.+++++++|+++++...++.|.+||.. ++.... +..+...+.++++++++.++++...++.|..||.. +
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 44566789999999999987776667899999988 554432 23355779999999999988887778899999986 3
Q ss_pred CceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee--cCCCeeEEEEecCCCEEEEEEcCCeEE
Q 003279 627 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYIS 704 (834)
Q Consensus 627 ~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~--~~~~i~~l~~sp~g~~ll~~s~dg~I~ 704 (834)
......+......+.++++.+++. ++++...++.|.+||. +++...... ....+..+++.+++..+++...++.|.
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 165 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG 165 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred cEEEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence 322222223456789999999875 6656666789999998 555443221 235688999999987666665678999
Q ss_pred EEECCCCeEEEE-EeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003279 705 ILDVETQVCRLK-LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 782 (834)
Q Consensus 705 iwDl~t~~~~~~-l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~s 782 (834)
+||. +++.... +..+...+.+++++++|.++++.. ++.|.+||. ++.. ...........+..++++++|..+++
T Consensus 166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~--~~~~~~~~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI--TEFKIPTPNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE--EEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE--EEEECCCCCCCceeEEECCCCCEEEe
Confidence 9999 6654432 333456788999999999777765 789999998 5521 11223334567899999999985444
Q ss_pred EEcCCeEEEEECCCCeEEEe--ccCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 783 IGCYETLELWNMTENKTLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 783 gs~dg~I~Iwdl~~~~~~~l--~~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
...++.|.+||. +++...+ ..+...+.++++ +++.++++...++.+++
T Consensus 242 ~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~ 291 (299)
T 2z2n_A 242 EWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKL 291 (299)
T ss_dssp ETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEE
T ss_pred ccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEE
Confidence 446789999998 4554433 345578999999 88887777655544443
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.71 E-value=6.2e-16 Score=184.35 Aligned_cols=241 Identities=10% Similarity=0.070 Sum_probs=165.8
Q ss_pred EEEEc--CCCCE-EEEEeC-CCcEEEEeCC--CCeEEEEecc-----CCCCeEEEEECCCCCEEEEEeCC----------
Q 003279 557 SCHFS--PDGKL-LATGGH-DKKAVLWCTE--SFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSAD---------- 615 (834)
Q Consensus 557 sl~fS--pdg~~-Lasgs~-Dg~I~IWd~~--t~~~~~~l~~-----h~~~I~~l~fspdg~~Latgs~D---------- 615 (834)
.+.|+ |||++ |+.++. +..|++|++. .......+.. |...+.+++|+|||+.|++++.|
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence 55565 99998 776654 5667777765 2033445555 67789999999999999999877
Q ss_pred CeEEEEecCCCC----ceeeeec-cCCCCeEEEEEccCCCcEEEEEeCC-------CcEEEEECC-CC---ceeeEeec-
Q 003279 616 RTVRVWDTENPD----YSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSIN-NG---SCAGVFKC- 678 (834)
Q Consensus 616 g~I~IWDl~s~~----~~i~~~~-~h~~~V~sl~fspdg~~llasgs~D-------g~I~lwDl~-s~---~~i~~~~~- 678 (834)
..|++||+.+.. .....+. .+...+..++|+|||+.+++++... ..|++||+. ++ +.......
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~ 240 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP 240 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred eEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence 589999998720 1234455 5667888999999998776555432 479999999 56 44444443
Q ss_pred CCCeeEEEEecCCCEEEEEEcCC--eEEEEECCCCeEEEEEeCCCCC--------EEEEEEcCCCCEEEEEeCCeEEEE-
Q 003279 679 QSGATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKLQGHKNQ--------VHSVCWNTSGEYLASVSDELVRVW- 747 (834)
Q Consensus 679 ~~~i~~l~~sp~g~~ll~~s~dg--~I~iwDl~t~~~~~~l~~h~~~--------I~sl~~spdg~~LasgsDg~I~Iw- 747 (834)
...+..+.|+|+++.++++..++ .|++||+.+++.......+... +.+++|++++.+++++.++.++||
T Consensus 241 ~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (662)
T 3azo_A 241 EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGI 320 (662)
T ss_dssp TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEE
T ss_pred CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEE
Confidence 46789999999999666666677 6777887777655433333222 567899999999888776777777
Q ss_pred -EcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE--EEEcCC--eEEEEECCCCeEEEe
Q 003279 748 -SIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL--VIGCYE--TLELWNMTENKTLTL 802 (834)
Q Consensus 748 -Dl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~--sgs~dg--~I~Iwdl~~~~~~~l 802 (834)
|+.++ .+..+..+...+..+. ++++..++ +++.+. .|++||+.+++...+
T Consensus 321 ~d~~~~----~~~~l~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 321 LDPESG----ELVDAAGPWTEWAATL-TVSGTRAVGVAASPRTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp EETTTT----EEEECCSSCCEEEEEE-EEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred EECCCC----cEEEecCCCCeEEEEE-ecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence 55444 3556666666777661 44444433 333343 677778888876654
No 179
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.70 E-value=5e-15 Score=161.50 Aligned_cols=234 Identities=10% Similarity=0.070 Sum_probs=174.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCC------------------------CeEEEEecCCCCceeeee-ccCCCCeEEEEEccC
Q 003279 594 TQWITDVRFSPSLSRLATSSAD------------------------RTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPS 648 (834)
Q Consensus 594 ~~~I~~l~fspdg~~Latgs~D------------------------g~I~IWDl~s~~~~i~~~-~~h~~~V~sl~fspd 648 (834)
-+.|.+|+++++|+++++.+.+ ++|.+||..++.. +..+ .++-..+..++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI-LQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE-EEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE-EeccCCCccCCceEEEECCC
Confidence 4569999999999999888777 4799999987765 3333 245567899999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCc-eeeEeec----------CCCeeEEEEec-CCCEEEEEE-cCCeEEEEECCCCeEEE
Q 003279 649 KEDLLCSCDNNSEIRYWSINNGS-CAGVFKC----------QSGATQMRFQP-RLGRILAAA-IENYISILDVETQVCRL 715 (834)
Q Consensus 649 g~~llasgs~Dg~I~lwDl~s~~-~i~~~~~----------~~~i~~l~~sp-~g~~ll~~s-~dg~I~iwDl~t~~~~~ 715 (834)
+. ++++...++.|++||..... .+..+.. -.....++++| ++..+++.+ .++.|++|| .++..+.
T Consensus 102 g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~ 179 (329)
T 3fvz_A 102 GN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT 179 (329)
T ss_dssp SC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred CC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence 87 77777788999999986542 4444421 12478999999 666666654 589999999 5566666
Q ss_pred EEeCC----------CCCEEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCCceeEEEee--cCCCceEEEEEeCCCCEEE
Q 003279 716 KLQGH----------KNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELS--CTGNKFHSCVFHPTFPSLL 781 (834)
Q Consensus 716 ~l~~h----------~~~I~sl~~spd-g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~--~~~~~I~svafspdg~~L~ 781 (834)
.+... -....+|+++|+ +.++++.. ++.|++||..++ +.+..+. .+...+..++|+| +..++
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G---~~~~~~~~~~~~~~~~~~~~~p-g~~~~ 255 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK---EFVREIKHASFGRNVFAISYIP-GFLFA 255 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC---CEEEEECCTTTTTCEEEEEEET-TEEEE
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC---cEEEEEeccccCCCcceeeecC-CEEEE
Confidence 66422 234889999998 56555555 889999999876 5555553 3456788999999 32222
Q ss_pred EE-------EcCCeEEEEECCCCeEEEe----ccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 782 VI-------GCYETLELWNMTENKTLTL----SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 782 sg-------s~dg~I~Iwdl~~~~~~~l----~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+. ..+..|++||+.+++.+.. ..+...+.+|+++|+|.++++...++.|++|+
T Consensus 256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence 22 2234899999999988854 35677899999999998888888999999985
No 180
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.70 E-value=4.4e-14 Score=153.14 Aligned_cols=244 Identities=13% Similarity=0.117 Sum_probs=176.3
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC----CeEEE
Q 003279 545 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRV 620 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D----g~I~I 620 (834)
+..+..+...+.+++|+++|++++++..++.|.+||.++++.......+...+.+++|+++++++++...+ +.|.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~ 116 (333)
T 2dg1_A 37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA 116 (333)
T ss_dssp EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEE
Confidence 44556777788999999999988888889999999999887766554567789999999999988877666 68999
Q ss_pred EecCCCCceeeeec--cCCCCeEEEEEccCCCcEEEEEeC------CCcEEEEECCCCceeeEeecCCCeeEEEEecCCC
Q 003279 621 WDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 692 (834)
Q Consensus 621 WDl~s~~~~i~~~~--~h~~~V~sl~fspdg~~llasgs~------Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~ 692 (834)
||..+.... ..+. .+...+.+++++|++. ++++... .+.|..||..+++..........+..++|+|+++
T Consensus 117 ~d~~~~~~~-~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~ 194 (333)
T 2dg1_A 117 ATENGDNLQ-DIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEK 194 (333)
T ss_dssp ECTTSCSCE-EEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSS
T ss_pred EeCCCCEEE-EEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCC
Confidence 999876542 1222 3456799999999986 4545442 3567777776655554444445678999999998
Q ss_pred EEEEEE-cCCeEEEEECCC-CeEEE--------EEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe
Q 003279 693 RILAAA-IENYISILDVET-QVCRL--------KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 761 (834)
Q Consensus 693 ~ll~~s-~dg~I~iwDl~t-~~~~~--------~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~ 761 (834)
.++++. .++.|.+||+.+ +.... .+.++ ..+.+++++++|.++++.. ++.|.+||.. + ..+..+
T Consensus 195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g---~~~~~~ 269 (333)
T 2dg1_A 195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-G---YPIGQI 269 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-S---CEEEEE
T ss_pred EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-C---CEEEEE
Confidence 776665 478999999964 32111 11222 4678899999999888776 7899999984 3 344454
Q ss_pred ecCCC------ceEEEEEeCCCCEEEEEEcCC------eEEEEECC
Q 003279 762 SCTGN------KFHSCVFHPTFPSLLVIGCYE------TLELWNMT 795 (834)
Q Consensus 762 ~~~~~------~I~svafspdg~~L~sgs~dg------~I~Iwdl~ 795 (834)
..... .+.+++|++++..|++++.++ .|+.+++.
T Consensus 270 ~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 270 LIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp ECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred EcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 43332 588999999988888777663 45555543
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.69 E-value=3.5e-15 Score=180.11 Aligned_cols=245 Identities=8% Similarity=-0.004 Sum_probs=176.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCe-------
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDK-----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT------- 617 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg-----~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~------- 617 (834)
+|+..+.+++|||||++||.+..++ .|++||+.+++.+.....+ ..+..++|+||++.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 3445688999999999999876543 8999999999887643222 23678999999999999988766
Q ss_pred ---------EEEEecCCCCce-ee--eeccCCCCeEEEEEccCCCcEEEEEeC----CCcEEEEECCC------Cc-eee
Q 003279 618 ---------VRVWDTENPDYS-LR--TFTGHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINN------GS-CAG 674 (834)
Q Consensus 618 ---------I~IWDl~s~~~~-i~--~~~~h~~~V~sl~fspdg~~llasgs~----Dg~I~lwDl~s------~~-~i~ 674 (834)
|++|++.++... .. ....|...+..+.|+||++.++++... +..|++||+.+ +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 999999876532 12 223355668899999999987766642 56899999986 42 234
Q ss_pred EeecCCCeeEEEEecCCCEEEEEEcCC----eEEEEECCCCe--EEEEEeCCCC--CEEEEEEcCCCCEEEEEe-CC--e
Q 003279 675 VFKCQSGATQMRFQPRLGRILAAAIEN----YISILDVETQV--CRLKLQGHKN--QVHSVCWNTSGEYLASVS-DE--L 743 (834)
Q Consensus 675 ~~~~~~~i~~l~~sp~g~~ll~~s~dg----~I~iwDl~t~~--~~~~l~~h~~--~I~sl~~spdg~~Lasgs-Dg--~ 743 (834)
.+..+.......|+++++.|++.+..+ .|.+||+.++. ....+..|.. .+.+++|++++.++++.. ++ .
T Consensus 281 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~ 360 (710)
T 2xdw_A 281 KLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT 360 (710)
T ss_dssp EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred EeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEE
Confidence 444322222335889999888877643 69999998764 1233444443 688899997777777777 77 5
Q ss_pred EEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCe
Q 003279 744 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENK 798 (834)
Q Consensus 744 I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d----g~I~Iwdl~~~~ 798 (834)
|++||+.++ ..+..+..+...+..++++|++..|++...+ +.|++||+.+++
T Consensus 361 l~~~~~~~g---~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 361 LQLHDLATG---ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEETTTC---CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEECCCC---CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 677787666 4556666667778889999999877655333 489999998876
No 182
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.68 E-value=1.4e-14 Score=154.88 Aligned_cols=243 Identities=9% Similarity=0.058 Sum_probs=179.6
Q ss_pred EEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC
Q 003279 546 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 624 (834)
..+..+.....+++|+|+|+ +++++..++.|.+||..++ ...+..+...+.+++|+++++++++...++.|.+||..
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP 98 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence 34445666788999999998 7888888999999999887 55666777889999999999988877777899999997
Q ss_pred CCCceeeeecc----CCCCeEEEEEccCCCcEEEE----Ee-------------CCCcEEEEECCCCceeeEeecCCCee
Q 003279 625 NPDYSLRTFTG----HSTTVMSLDFHPSKEDLLCS----CD-------------NNSEIRYWSINNGSCAGVFKCQSGAT 683 (834)
Q Consensus 625 s~~~~i~~~~~----h~~~V~sl~fspdg~~llas----gs-------------~Dg~I~lwDl~s~~~i~~~~~~~~i~ 683 (834)
++.... .... ....+.+++++|+|. ++++ ++ ..+.|..++.. ++............
T Consensus 99 ~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~ 175 (296)
T 3e5z_A 99 GGEWES-IADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPN 175 (296)
T ss_dssp TCCEEE-EECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEE
T ss_pred CCcEEE-EeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCc
Confidence 765322 1111 123567899999986 5555 22 13466667665 55444444445678
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECC-CCeE---EEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEE
Q 003279 684 QMRFQPRLGRILAAAIENYISILDVE-TQVC---RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIH 759 (834)
Q Consensus 684 ~l~~sp~g~~ll~~s~dg~I~iwDl~-t~~~---~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~ 759 (834)
.++|+|+++.+++...++.|.+||+. ++.. ...+..+...+.+++++++|+++++. ++.|.+||.. + +.+.
T Consensus 176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g---~~~~ 250 (296)
T 3e5z_A 176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-G---DELG 250 (296)
T ss_dssp EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-S---CEEE
T ss_pred cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-C---CEEE
Confidence 99999999998555667899999997 4544 33333355567789999999987777 8899999986 3 4666
Q ss_pred EeecCCCceEEEEE-eCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 760 ELSCTGNKFHSCVF-HPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 760 ~~~~~~~~I~svaf-spdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
.+..+.. +.+++| .|++..|++++.+ .|..++.++.++.
T Consensus 251 ~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 251 RVLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp EEECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred EEECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence 6666666 889999 5899988888875 5767777776554
No 183
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.68 E-value=2.3e-14 Score=156.39 Aligned_cols=251 Identities=10% Similarity=0.019 Sum_probs=188.5
Q ss_pred CCCcEEEEeCCCCeEEEEec------cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEE
Q 003279 572 HDKKAVLWCTESFTVKSTLE------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 645 (834)
Q Consensus 572 ~Dg~I~IWd~~t~~~~~~l~------~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~f 645 (834)
.++.|.+||.++++....+. .......++++. +++++++...++.|.+||..+.+. +..+. .......+++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~-~~~i~-~~~~p~~i~~ 91 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE-VGRIT-GFTSPRYIHF 91 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE-EEEEE-CCSSEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE-EEEcC-CCCCCcEEEE
Confidence 37899999999998875542 122346778874 445566666689999999998764 44453 3467899999
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCC------CeeEEEEecCCCEEEEEE--cCCeEEEEECCCCeEEEEE
Q 003279 646 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS------GATQMRFQPRLGRILAAA--IENYISILDVETQVCRLKL 717 (834)
Q Consensus 646 spdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~------~i~~l~~sp~g~~ll~~s--~dg~I~iwDl~t~~~~~~l 717 (834)
++++ .++++...++.|.+||+.+++....+.... ....+++ +++.++++. .++.|.+||+++++.+..+
T Consensus 92 ~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i 168 (328)
T 3dsm_A 92 LSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDEL 168 (328)
T ss_dssp EETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEE
T ss_pred eCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEE
Confidence 8887 566566578999999999999888887655 5667777 456777766 3789999999999888877
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEe-C----------CeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEEc
Q 003279 718 QGHKNQVHSVCWNTSGEYLASVS-D----------ELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGC 785 (834)
Q Consensus 718 ~~h~~~I~sl~~spdg~~Lasgs-D----------g~I~IwDl~s~~~~~~i~~~~~~-~~~I~svafspdg~~L~sgs~ 785 (834)
... .....++++++|++++++. + +.|.+||..++ +....+... ......++|+|+++.|+++..
T Consensus 169 ~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~---~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~ 244 (328)
T 3dsm_A 169 TIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF---TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN 244 (328)
T ss_dssp ECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT---EEEEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred EcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC---eEEEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence 643 3457899999999877766 4 68999999887 455444432 346889999999999888765
Q ss_pred CCeEEEEECCCCeEEE--ec-cCCCCeEEEEEeC-CCCEEEEE----ecCCcEEEeC
Q 003279 786 YETLELWNMTENKTLT--LS-AHDKLVSSLAAST-VNGMVASA----SHDKCVKIWK 834 (834)
Q Consensus 786 dg~I~Iwdl~~~~~~~--l~-~h~~~V~~lafsp-dg~~LaSg----s~DG~I~IWd 834 (834)
.|.+||..+++... +. .+.....+++++| ++.++++. ..++.|.+||
T Consensus 245 --~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 245 --DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp --SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred --EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 89999999887642 11 2246789999999 45566665 5688999986
No 184
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.67 E-value=1.3e-14 Score=157.87 Aligned_cols=232 Identities=18% Similarity=0.198 Sum_probs=162.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCC---C--cEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC------------
Q 003279 553 SKVESCHFSPDGKLLATGGHD---K--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD------------ 615 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~D---g--~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D------------ 615 (834)
..+.+++|||||++||.++.+ + .|++||+.+++.......+ . +.+++|+||++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 458899999999999988754 2 4888899888776555433 3 9999999999999888642
Q ss_pred ---------------CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC---------cEEEEECCCCc
Q 003279 616 ---------------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS---------EIRYWSINNGS 671 (834)
Q Consensus 616 ---------------g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg---------~I~lwDl~s~~ 671 (834)
..|++||+.++.. +..+.. . .+..++|+|++ +++++..+. .|.++| +++
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~-~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~~~ 209 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEV-IEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--DGK 209 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEE-EEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--TTE
T ss_pred cceeecCcccccCccceEEEEECCCCeE-EeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeC--CCc
Confidence 5799999987653 233333 3 78899999998 666665432 355555 555
Q ss_pred eeeEeecCCCeeEEEEecCCCEEEEEEcC--------CeEEEEECCCCeEEEEEeCCCCCEEE-EEEcCCCCEEEEEe-C
Q 003279 672 CAGVFKCQSGATQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLKLQGHKNQVHS-VCWNTSGEYLASVS-D 741 (834)
Q Consensus 672 ~i~~~~~~~~i~~l~~sp~g~~ll~~s~d--------g~I~iwDl~t~~~~~~l~~h~~~I~s-l~~spdg~~Lasgs-D 741 (834)
....... ..+.. ++|+|+.|++++.+ ..|.+|| +++.......+...+.. +.|+ ++ ++++++ +
T Consensus 210 ~~~l~~~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~ 282 (347)
T 2gop_A 210 EEKMFEK-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEE 282 (347)
T ss_dssp EEEEEEE-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEET
T ss_pred eEEeccC-cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecC
Confidence 5444443 33433 49999999888754 3688888 56555444556777886 9999 88 777777 8
Q ss_pred CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE-EEEECCCCeEEEeccCCCC
Q 003279 742 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL-ELWNMTENKTLTLSAHDKL 808 (834)
Q Consensus 742 g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I-~Iwdl~~~~~~~l~~h~~~ 808 (834)
+.++|| +.++ .. ..+..+...|.+++|+| ..+++++.++.. .||.+. ++...+..|...
T Consensus 283 ~~~~l~-~~~g---~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~~~~lt~~n~~ 342 (347)
T 2gop_A 283 GSVNLY-IWDG---EI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GEEKQLTDYNDP 342 (347)
T ss_dssp TEEEEE-EESS---SE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SSEEECCCTTST
T ss_pred CcEEEE-EcCC---ce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-CcEEEeccccHh
Confidence 899999 8743 33 33334477899999999 667777777643 666665 666566666543
No 185
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.66 E-value=2.1e-13 Score=159.80 Aligned_cols=265 Identities=11% Similarity=0.061 Sum_probs=195.3
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC--CCCceeeeeccCCCC
Q 003279 562 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE--NPDYSLRTFTGHSTT 639 (834)
Q Consensus 562 pdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~--s~~~~i~~~~~h~~~ 639 (834)
+.+.++++...++.|.+||..+++.+.++... ..+..+.|+||++++++++.|+.|.+||+. +.+. +..+.. ...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~-v~~i~~-G~~ 241 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT-VAEIKI-GSE 241 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE-EEEEEC-CSE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE-eEEEec-CCC
Confidence 34456677778899999999999999888643 357799999999999999999999999995 5443 444443 334
Q ss_pred eEEEEEc----cCCCcEEEEEeCCCcEEEEECCCCceeeEeecC------------CCeeEEEEecCCCEEEEEEc-CCe
Q 003279 640 VMSLDFH----PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------SGATQMRFQPRLGRILAAAI-ENY 702 (834)
Q Consensus 640 V~sl~fs----pdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~------------~~i~~l~~sp~g~~ll~~s~-dg~ 702 (834)
...++|+ |+|++++++...++.|.++|..+.+.+..+... ..+..+.+++++..+++... +|.
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 6799999 699988888888899999999999988877642 15677888888776666554 589
Q ss_pred EEEEECCCCeE--EEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeec-----CCCceEEEEE
Q 003279 703 ISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC-----TGNKFHSCVF 773 (834)
Q Consensus 703 I~iwDl~t~~~--~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~-----~~~~I~svaf 773 (834)
|.++|..+... +..+. ......++.|+|++++++++. ++.|.++|+.++ +.+..+.. |.+.... .+
T Consensus 322 v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~---kl~~~i~vgg~~Phpg~g~~-~~ 396 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG---KLVAIEDTGGQTPHPGRGAN-FV 396 (567)
T ss_dssp EEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSSBCCTTCEE-EE
T ss_pred EEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCC---cEEEEEeccCcCCCCcccee-eE
Confidence 99999987532 23332 445678999999999988776 789999999987 44444433 2211112 26
Q ss_pred eCCCCEEEEEE--cCCeEEEEECCC-------CeEE-EeccCCCCeEEEEEeCCCCEEEEEec-------CCcEEEeC
Q 003279 774 HPTFPSLLVIG--CYETLELWNMTE-------NKTL-TLSAHDKLVSSLAASTVNGMVASASH-------DKCVKIWK 834 (834)
Q Consensus 774 spdg~~L~sgs--~dg~I~Iwdl~~-------~~~~-~l~~h~~~V~~lafspdg~~LaSgs~-------DG~I~IWd 834 (834)
+|++..+++.+ .++.|.++|..+ .+.+ .+......-..+.++|++++|.+... ...|.|+|
T Consensus 397 ~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 397 HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred CCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence 88866666554 457999999987 5555 33333333355788999998888663 34787775
No 186
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.65 E-value=5.4e-14 Score=150.18 Aligned_cols=240 Identities=9% Similarity=0.062 Sum_probs=173.5
Q ss_pred CeEEEEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 662 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 662 (834)
+..+..+..+.....+++|+|+++ +++++..++.|.+||..++ ...+..+...+.++++++++. ++++...++.|
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i 92 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRL 92 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTCC-EEEEETTTTEE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCCc-EEEEecCCCeE
Confidence 334455556677789999999998 7788888999999999875 455666778899999999987 56566567899
Q ss_pred EEEECCCCceeeEeec-----CCCeeEEEEecCCCEEEEE----E-------------cCCeEEEEECCCCeEEEEEeCC
Q 003279 663 RYWSINNGSCAGVFKC-----QSGATQMRFQPRLGRILAA----A-------------IENYISILDVETQVCRLKLQGH 720 (834)
Q Consensus 663 ~lwDl~s~~~i~~~~~-----~~~i~~l~~sp~g~~ll~~----s-------------~dg~I~iwDl~t~~~~~~l~~h 720 (834)
.+||..+++....... ...+..++++|+|+.+++. + ..+.|..||.. ++. ..+..+
T Consensus 93 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~ 170 (296)
T 3e5z_A 93 ERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRD 170 (296)
T ss_dssp EEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECC
T ss_pred EEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecC
Confidence 9999988876544322 2346679999999877763 2 13467777766 443 334456
Q ss_pred CCCEEEEEEcCCCCEEEEEe-CCeEEEEEcC-CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 003279 721 KNQVHSVCWNTSGEYLASVS-DELVRVWSIG-SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 798 (834)
Q Consensus 721 ~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~-s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~ 798 (834)
......++|+|++++|++.. ++.|++||+. ++........+..+...+..++++++|..++ ++ ++.|.+||.....
T Consensus 171 ~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v-~~-~~~v~~~~~~g~~ 248 (296)
T 3e5z_A 171 RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWA-SA-GDGVHVLTPDGDE 248 (296)
T ss_dssp CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEE-EE-TTEEEEECTTSCE
T ss_pred CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEE-Ec-CCeEEEECCCCCE
Confidence 67789999999999985555 7899999997 3321011222233455567899999998544 44 7899999987444
Q ss_pred EEEeccCCCCeEEEEE-eCCCCEEEEEecCCcEEE
Q 003279 799 TLTLSAHDKLVSSLAA-STVNGMVASASHDKCVKI 832 (834)
Q Consensus 799 ~~~l~~h~~~V~~laf-spdg~~LaSgs~DG~I~I 832 (834)
...+..+.. +.+++| .++++.|++++.++.+++
T Consensus 249 ~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 249 LGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSI 282 (296)
T ss_dssp EEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred EEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence 445666666 999999 589998998888875554
No 187
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.65 E-value=1e-12 Score=139.03 Aligned_cols=275 Identities=8% Similarity=-0.025 Sum_probs=194.5
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE-EeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC
Q 003279 548 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 626 (834)
Q Consensus 548 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~ 626 (834)
+......+.+++++++|+++++...++.|.+||.. ++... .+..+...+.++++.+++.++++...++.|.+||.. +
T Consensus 15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 34456679999999999988877778999999988 55543 233344679999999999888877778899999988 4
Q ss_pred CceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeE-ee-cCCCeeEEEEecCCCEEEEEEcCCeEE
Q 003279 627 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK-CQSGATQMRFQPRLGRILAAAIENYIS 704 (834)
Q Consensus 627 ~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~-~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~ 704 (834)
.............+.++++.+++. ++++...++.|..||.. ++.... +. ....+..+++.++++.+++...++.|.
T Consensus 93 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 170 (300)
T 2qc5_A 93 GFTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIG 170 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred CeEEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEE
Confidence 432222333446789999998876 55566557899999988 554422 22 235688999999988555555578999
Q ss_pred EEECCCCeEEE-EEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003279 705 ILDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 782 (834)
Q Consensus 705 iwDl~t~~~~~-~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~s 782 (834)
+||. +++... ....+...+.+++++++|.++++.. .+.|.+||. ++. ............+.+++++++|..+++
T Consensus 171 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~--~~~~~~~~~~~~~~~i~~d~~g~l~v~ 246 (300)
T 2qc5_A 171 RITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE--ISEYDIPTPNARPHAITAGKNSEIWFT 246 (300)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--EEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc--EEEEECCCCCCCceEEEECCCCCEEEe
Confidence 9999 454333 2223456789999999998777766 678999998 332 112223334567889999999985444
Q ss_pred EEcCCeEEEEECCCCeEEEe--ccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 783 IGCYETLELWNMTENKTLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 783 gs~dg~I~Iwdl~~~~~~~l--~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
...++.|.+||. +++...+ ......+.+++++++|.++++.. . .|..+
T Consensus 247 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 247 EWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL 296 (300)
T ss_dssp ETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred ccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence 445689999998 4554433 33456789999999998766655 4 55544
No 188
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.65 E-value=5e-15 Score=178.31 Aligned_cols=246 Identities=10% Similarity=0.010 Sum_probs=171.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEE-----eCCCcEEEEeCCCCeEEEEeccCCCCe--EEEEECCCCCEEEEEeCCCe-----
Q 003279 550 ASTSKVESCHFSPDGKLLATG-----GHDKKAVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATSSADRT----- 617 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasg-----s~Dg~I~IWd~~t~~~~~~l~~h~~~I--~~l~fspdg~~Latgs~Dg~----- 617 (834)
+|+..+.+++|||||++||.+ +.+..|++||+.+++.+. ..+...+ ..++|+||++.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 466678999999999999943 445689999999988641 1122222 68999999999999998876
Q ss_pred --------EEEEecCCCCc---eeeeeccCCCCeEEEEEccCCCcEEEEEeCC-C--cEEEEECCCCceeeEeecCCCee
Q 003279 618 --------VRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-S--EIRYWSINNGSCAGVFKCQSGAT 683 (834)
Q Consensus 618 --------I~IWDl~s~~~---~i~~~~~h~~~V~sl~fspdg~~llasgs~D-g--~I~lwDl~s~~~i~~~~~~~~i~ 683 (834)
|++|++.++.. .+.....|...+.++.|+|+|+.++++...+ + .|++||..++...........+.
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 275 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY 275 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE
Confidence 99999987653 2233334556889999999999887666544 2 67777776666555555555566
Q ss_pred EEEEecCCCEEEEEEc----CCeEEEEECCCCeE---EEEEeCC-CCCEEEEEEcCCCCEEEEEe-CCeEEEEEcC-CCC
Q 003279 684 QMRFQPRLGRILAAAI----ENYISILDVETQVC---RLKLQGH-KNQVHSVCWNTSGEYLASVS-DELVRVWSIG-SGS 753 (834)
Q Consensus 684 ~l~~sp~g~~ll~~s~----dg~I~iwDl~t~~~---~~~l~~h-~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~-s~~ 753 (834)
...+ +++. +++.+. ++.|.+||+.++.. ...+..+ ...+..++|+ ++.++++.. |+..+||.+. .+
T Consensus 276 ~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g- 351 (695)
T 2bkl_A 276 EVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKG- 351 (695)
T ss_dssp EEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC-
T ss_pred EEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC-
Confidence 6666 5666 555554 47899999987642 3333333 4567888998 666777766 8877777655 23
Q ss_pred CceeEEEeecC-CCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCeEEEec
Q 003279 754 KGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTLS 803 (834)
Q Consensus 754 ~~~~i~~~~~~-~~~I~svafspdg~~L~sgs~d----g~I~Iwdl~~~~~~~l~ 803 (834)
..+..+..+ ...+..++++|++..|++...+ +.|++||+.+++...+.
T Consensus 352 --~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~ 404 (695)
T 2bkl_A 352 --KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWA 404 (695)
T ss_dssp --CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred --CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence 344455444 5567778899999877755433 58999999988765443
No 189
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.64 E-value=4.4e-15 Score=163.97 Aligned_cols=248 Identities=8% Similarity=0.029 Sum_probs=171.1
Q ss_pred EEEeCCCCeEEEEeccCCCC-----eEEEEECCCCCEEEEEeCC---CeEEEEecCCCCceeeeeccCCCC-eEEEEEcc
Q 003279 577 VLWCTESFTVKSTLEEHTQW-----ITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTT-VMSLDFHP 647 (834)
Q Consensus 577 ~IWd~~t~~~~~~l~~h~~~-----I~~l~fspdg~~Latgs~D---g~I~IWDl~s~~~~i~~~~~h~~~-V~sl~fsp 647 (834)
..+|..++..+..+..+... +.+++|+|||++|+.+..+ ..|++||+.++. ...+..+... +..+.|+|
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~sp 90 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ--AVQLTEGKGDNTFGGFIST 90 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE--EEECCCSSCBCTTTCEECT
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCc--EEEeecCCCCccccceECC
Confidence 44577888888787665444 7889999999998877653 378888988754 2333333333 33478999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCe-eE-------------------EEEecCCCEEEEE-----EcCCe
Q 003279 648 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQ-------------------MRFQPRLGRILAA-----AIENY 702 (834)
Q Consensus 648 dg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i-~~-------------------l~~sp~g~~ll~~-----s~dg~ 702 (834)
+++.++ .++.++.|++||+.+++.......+... .. +.|+|+++.++++ ..+..
T Consensus 91 dg~~l~-~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~ 169 (396)
T 3c5m_A 91 DERAFF-YVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCR 169 (396)
T ss_dssp TSSEEE-EEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEE
T ss_pred CCCEEE-EEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcce
Confidence 988555 5556778999999988876666533331 11 2456666655544 34568
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcC-CCCEEEEEe-C------CeEEEEEcCCCCCceeEEEeecC--CCceEEEE
Q 003279 703 ISILDVETQVCRLKLQGHKNQVHSVCWNT-SGEYLASVS-D------ELVRVWSIGSGSKGECIHELSCT--GNKFHSCV 772 (834)
Q Consensus 703 I~iwDl~t~~~~~~l~~h~~~I~sl~~sp-dg~~Lasgs-D------g~I~IwDl~s~~~~~~i~~~~~~--~~~I~sva 772 (834)
|++||+.+++..... .+...+..+.|+| ++..|+..+ + ..|.+||+..+. ...+..+ ...+..++
T Consensus 170 l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~----~~~l~~~~~~~~~~~~~ 244 (396)
T 3c5m_A 170 LIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN----VRKIKEHAEGESCTHEF 244 (396)
T ss_dssp EEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC----CEESSCCCTTEEEEEEE
T ss_pred EEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc----eeEeeccCCCccccceE
Confidence 999999988765544 4667899999999 788776655 2 368889987652 1222222 23577899
Q ss_pred EeCCCCEEEEEEcC-----CeEEEEECCCCeEEEeccCCCCeEEEEEeC-CCCEEEEEe----------------cCCcE
Q 003279 773 FHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDKLVSSLAAST-VNGMVASAS----------------HDKCV 830 (834)
Q Consensus 773 fspdg~~L~sgs~d-----g~I~Iwdl~~~~~~~l~~h~~~V~~lafsp-dg~~LaSgs----------------~DG~I 830 (834)
|+|+|++|++++.+ +.|++||+.+++...+..... .. +.|+| ||++|++++ .++.|
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i 322 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFL 322 (396)
T ss_dssp ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEE
T ss_pred ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcE
Confidence 99999988877654 349999999887665443332 33 89999 999888765 24678
Q ss_pred EEeC
Q 003279 831 KIWK 834 (834)
Q Consensus 831 ~IWd 834 (834)
++||
T Consensus 323 ~~~d 326 (396)
T 3c5m_A 323 YVLN 326 (396)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8885
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.63 E-value=1e-13 Score=151.24 Aligned_cols=253 Identities=8% Similarity=-0.020 Sum_probs=181.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeee
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 633 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~ 633 (834)
....+.+. +++++++...++.|.+||..+++.+.++. .......++++++++++++...++.|.+||+.+.+. ...+
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~-~~~i 121 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEI-TGYI 121 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEE-EEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeE-EEEE
Confidence 35677774 34455566667999999999999988885 346789999988885444444899999999998654 3333
Q ss_pred ccCC-----CCeEEEEEccCCCcEEEEEe-CCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcC-------
Q 003279 634 TGHS-----TTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE------- 700 (834)
Q Consensus 634 ~~h~-----~~V~sl~fspdg~~llasgs-~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d------- 700 (834)
.... .....+++ ++..++++.. .++.|.+||+.+++.+..+........+.++++++.++++..+
T Consensus 122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~ 199 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYG 199 (328)
T ss_dssp ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSC
T ss_pred EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccc
Confidence 3222 14566777 3455665554 4889999999999999888877778889999998766555544
Q ss_pred ---CeEEEEECCCCeEEEEEeCC-CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC
Q 003279 701 ---NYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 776 (834)
Q Consensus 701 ---g~I~iwDl~t~~~~~~l~~h-~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspd 776 (834)
+.|.+||..+++....+... ......++|+|++++|+++.. .|.+||..++.... ...+.........++++|+
T Consensus 200 ~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~-~~~~~~~~~~p~gi~vdp~ 277 (328)
T 3dsm_A 200 YEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPV-RPFLEFRDTKYYGLTVNPN 277 (328)
T ss_dssp BCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCS-SCSBCCCSSCEEEEEECTT
T ss_pred cCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceee-eeeecCCCCceEEEEEcCC
Confidence 78999999999887776532 346889999999998887655 89999998774311 1111222466889999996
Q ss_pred CCEEEEEE-----cCCeEEEEECCCCeEEEeccCCCCeEEEEE
Q 003279 777 FPSLLVIG-----CYETLELWNMTENKTLTLSAHDKLVSSLAA 814 (834)
Q Consensus 777 g~~L~sgs-----~dg~I~Iwdl~~~~~~~l~~h~~~V~~laf 814 (834)
+..|+++. .++.|.+||.. ++.+....-......++|
T Consensus 278 ~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~ 319 (328)
T 3dsm_A 278 NGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCW 319 (328)
T ss_dssp TCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEE
T ss_pred CCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEE
Confidence 65566665 56799999998 776633333444555555
No 191
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.62 E-value=9.2e-14 Score=154.13 Aligned_cols=271 Identities=10% Similarity=0.069 Sum_probs=194.4
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEe----------CCCeEEEEe
Q 003279 558 CHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWD 622 (834)
Q Consensus 558 l~fSpdg~~Lasgs~-----Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs----------~Dg~I~IWD 622 (834)
....|+++.+++... ++.|.++|..+++.+.++.....+ . ++++||++++++++ .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 445789998888865 679999999999999998766665 4 99999999988776 367899999
Q ss_pred cCCCCceeeeec-cC------CCCeEEEEEccCCCcEEEEEeC-CCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEE
Q 003279 623 TENPDYSLRTFT-GH------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 694 (834)
Q Consensus 623 l~s~~~~i~~~~-~h------~~~V~sl~fspdg~~llasgs~-Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~l 694 (834)
..+.+. +..+. +. ......+.|+|||++++++... ++.|.++|+.+++.+..+..... ...+......+
T Consensus 116 ~~t~~v-~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~ 192 (386)
T 3sjl_D 116 PVTLLP-TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTF 192 (386)
T ss_dssp TTTCCE-EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEE
T ss_pred CCCCeE-EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCcee
Confidence 998764 44332 21 2246679999999987766543 78999999999999999876442 22333345677
Q ss_pred EEEEcCCeEEEEECCC-CeEEEEEeCC----CCCEE-EEEEc-CCCCEEEEEeCCeEEEEEcCCCCCceeEEEee---c-
Q 003279 695 LAAAIENYISILDVET-QVCRLKLQGH----KNQVH-SVCWN-TSGEYLASVSDELVRVWSIGSGSKGECIHELS---C- 763 (834)
Q Consensus 695 l~~s~dg~I~iwDl~t-~~~~~~l~~h----~~~I~-sl~~s-pdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~---~- 763 (834)
++.+.||.+.++++.+ ++.......+ ..++. ...|. ++|++++++.++.|+++|+.+... ..+..+. .
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~-~v~~~~~~~~~~ 271 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAVEALTEA 271 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECCCEESSCHH
T ss_pred EEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcc-eeecceeccccc
Confidence 8889999999999986 5543322111 12222 24664 688777766689999999976532 2222221 0
Q ss_pred ------CCCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCC-EEEEEe-
Q 003279 764 ------TGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS- 825 (834)
Q Consensus 764 ------~~~~I~svafspdg~~L~sgs~----------dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~-~LaSgs- 825 (834)
....+..+++++++..+++... .+.|.++|+.+++++....-...+..|++++|++ +|+++.
T Consensus 272 ~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~ 351 (386)
T 3sjl_D 272 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST 351 (386)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEET
T ss_pred cccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcC
Confidence 1123335778999999988753 2479999999999985554455889999999997 666654
Q ss_pred cCCcEEEeC
Q 003279 826 HDKCVKIWK 834 (834)
Q Consensus 826 ~DG~I~IWd 834 (834)
.++.|.++|
T Consensus 352 ~~~~VsViD 360 (386)
T 3sjl_D 352 GDKTLYIHD 360 (386)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEEEE
Confidence 588999886
No 192
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.62 E-value=1.1e-13 Score=144.93 Aligned_cols=238 Identities=8% Similarity=-0.042 Sum_probs=169.0
Q ss_pred CeEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeee
Q 003279 554 KVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 554 ~V~sl~fSpdg~~La-sgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~ 632 (834)
...+++++++|++++ +.+.++.|.+||..+.........+...+.++++++++.++++.. ++.|.+||...... ..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~--~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ--TV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC--EE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE--ee
Confidence 578899999999777 446788999999766544332233445688999999998666655 88999999876442 22
Q ss_pred ec-cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003279 633 FT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET 710 (834)
Q Consensus 633 ~~-~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t 710 (834)
+. .....+.++++++++. ++++...++.|.+|+..+........ ....+..+++++++..+++...++.|.+||...
T Consensus 102 ~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 180 (270)
T ss_dssp CCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred eecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence 22 2336789999999876 66666678899999876554332221 224578899999988665555678999999987
Q ss_pred CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003279 711 QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 789 (834)
Q Consensus 711 ~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I 789 (834)
.........+...+.+++++++|.++++.. ++.|.+||..... .......+...+..++++++|..+++...++.|
T Consensus 181 ~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v 257 (270)
T 1rwi_B 181 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT---STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV 257 (270)
T ss_dssp CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC---CEECCCCSCSCEEEEEECTTCCEEEEEGGGTEE
T ss_pred CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc---ceeeccCCCCCceeEEECCCCCEEEEECCCCEE
Confidence 765544333446789999999997777766 7899999987642 221112233568999999999877777778899
Q ss_pred EEEECCCCe
Q 003279 790 ELWNMTENK 798 (834)
Q Consensus 790 ~Iwdl~~~~ 798 (834)
++|++...+
T Consensus 258 ~~~~~~~~~ 266 (270)
T 1rwi_B 258 VKLTSLEHH 266 (270)
T ss_dssp EEECCCGGG
T ss_pred EEEcCCCcc
Confidence 999987654
No 193
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.61 E-value=1.6e-12 Score=144.62 Aligned_cols=266 Identities=9% Similarity=0.008 Sum_probs=185.7
Q ss_pred EcCCCCEEEEEeC--CC---cEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEe----------CCCeEEEEecC
Q 003279 560 FSPDGKLLATGGH--DK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTE 624 (834)
Q Consensus 560 fSpdg~~Lasgs~--Dg---~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs----------~Dg~I~IWDl~ 624 (834)
..|++++++++.. .. .|.+||..+++.+..+.....+ .++|+||+++|+++. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 4467777776653 22 8899999999999888765544 999999999999886 36789999998
Q ss_pred CCCceeeeeccC-------CCCeEEEEEccCCCcEEEEEeC-CCcEEEEECCCCceeeE-eecCCCeeEEEEecCC-CEE
Q 003279 625 NPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGV-FKCQSGATQMRFQPRL-GRI 694 (834)
Q Consensus 625 s~~~~i~~~~~h-------~~~V~sl~fspdg~~llasgs~-Dg~I~lwDl~s~~~i~~-~~~~~~i~~l~~sp~g-~~l 694 (834)
+.+. +..+.-. ......+.|+|+|++++++... ++.|.++| .+++.+.. +..... +.+.|++ ..+
T Consensus 106 t~~~-~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~ 180 (373)
T 2mad_H 106 TFLP-IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTF 180 (373)
T ss_pred CCcE-EEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceE
Confidence 7554 3333211 1335589999999987766544 58899999 99998877 665432 4455655 455
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEe-----CCCCCE-EEEEEcCCCCEE-EEEeCCeEEEEEcCCCCCceeEEEeec----
Q 003279 695 LAAAIENYISILDVETQVCRLKLQ-----GHKNQV-HSVCWNTSGEYL-ASVSDELVRVWSIGSGSKGECIHELSC---- 763 (834)
Q Consensus 695 l~~s~dg~I~iwDl~t~~~~~~l~-----~h~~~I-~sl~~spdg~~L-asgsDg~I~IwDl~s~~~~~~i~~~~~---- 763 (834)
++.+.||.+.++|. +++.+.... ....++ ....+.+++..+ +...++.|.++|+..... ..+..+..
T Consensus 181 ~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~-~v~~~~~~~~~~ 258 (373)
T 2mad_H 181 YLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-TNKAPIDALSGG 258 (373)
T ss_pred EEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc-eEeeeeeecCCc
Confidence 66677899999999 776653322 111222 234566665544 444478999999976422 22222221
Q ss_pred ------CCCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCC-EEEEEe-
Q 003279 764 ------TGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS- 825 (834)
Q Consensus 764 ------~~~~I~svafspdg~~L~sgs~----------dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~-~LaSgs- 825 (834)
.......++++++++.++++.. .+.|.++|+.+++.+..........+++|+|||+ +++++.
T Consensus 259 ~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~ 338 (373)
T 2mad_H 259 RKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSA 338 (373)
T ss_pred ccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcC
Confidence 1122445789999998888754 3579999999999885445556799999999999 788877
Q ss_pred cCCcEEEeC
Q 003279 826 HDKCVKIWK 834 (834)
Q Consensus 826 ~DG~I~IWd 834 (834)
.++.|.+||
T Consensus 339 ~~~~V~ViD 347 (373)
T 2mad_H 339 GTEVLHIYD 347 (373)
T ss_pred CCCeEEEEE
Confidence 589999986
No 194
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.60 E-value=1.9e-13 Score=164.82 Aligned_cols=268 Identities=8% Similarity=-0.011 Sum_probs=183.4
Q ss_pred CCCCEEEEEeCCC-----cEEEEeCCCCeEEEEe------ccCCCCeEEEEECCCCCEEEEEeCCC-----eEEEEecCC
Q 003279 562 PDGKLLATGGHDK-----KAVLWCTESFTVKSTL------EEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTEN 625 (834)
Q Consensus 562 pdg~~Lasgs~Dg-----~I~IWd~~t~~~~~~l------~~h~~~I~~l~fspdg~~Latgs~Dg-----~I~IWDl~s 625 (834)
|||++++....++ .|++.+...++....+ .+|...+..++|+|||++||.++.++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 8899887665332 3455555444433222 23445688999999999998776543 899999998
Q ss_pred CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCc----------------EEEEECCCCcee--eEeec---CCCeeE
Q 003279 626 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE----------------IRYWSINNGSCA--GVFKC---QSGATQ 684 (834)
Q Consensus 626 ~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~----------------I~lwDl~s~~~i--~~~~~---~~~i~~ 684 (834)
++.....+. ...+.+++|+||++.++++.. ++. |++|++.++... ..+.. ...+..
T Consensus 161 g~~~~~~~~--~~~~~~~~wspDg~~l~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~ 237 (710)
T 2xdw_A 161 AKELPDVLE--RVKFSCMAWTHDGKGMFYNAY-PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG 237 (710)
T ss_dssp TEEEEEEEE--EECSCCEEECTTSSEEEEEEC-CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred CCCCccccc--CcccceEEEEeCCCEEEEEEE-CCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEE
Confidence 764322222 223678999999987776554 433 999999887632 22222 233678
Q ss_pred EEEecCCCEEEEEEc-----CCeEEEEECCC------Ce-EEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC---eEEEE
Q 003279 685 MRFQPRLGRILAAAI-----ENYISILDVET------QV-CRLKLQGHKNQVHSVCWNTSGEYLASVS--DE---LVRVW 747 (834)
Q Consensus 685 l~~sp~g~~ll~~s~-----dg~I~iwDl~t------~~-~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg---~I~Iw 747 (834)
+.|+|++++|++++. +..|++||+.+ +. ....+..+...+.. .|+++|..|+..+ ++ .|.+|
T Consensus 238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~ 316 (710)
T 2xdw_A 238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINI 316 (710)
T ss_dssp EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEE
T ss_pred EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEE
Confidence 999999999998876 56899999986 42 35556666666655 4888998777665 22 69999
Q ss_pred EcCCCCCceeEEEeecCCC--ceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEE
Q 003279 748 SIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVA 822 (834)
Q Consensus 748 Dl~s~~~~~~i~~~~~~~~--~I~svafspdg~~L~sgs~dg--~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~La 822 (834)
|+.++... ....+..+.. .+..++|++++.++++...++ .|++||+.+++.+ .+..+.+.|..++++|++..|+
T Consensus 317 d~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~ 395 (710)
T 2xdw_A 317 DFTDPEES-KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIF 395 (710)
T ss_dssp ETTSCCGG-GCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred eCCCCCcc-cceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEE
Confidence 99876321 2233333433 678899997777777777777 5777888667644 5666778899999999987655
Q ss_pred EE-e---cCCcEEEeC
Q 003279 823 SA-S---HDKCVKIWK 834 (834)
Q Consensus 823 Sg-s---~DG~I~IWd 834 (834)
.. + ..+.|++||
T Consensus 396 ~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 396 YQFTSFLSPGIIYHCD 411 (710)
T ss_dssp EEEECSSCCCEEEEEE
T ss_pred EEEeCCCCCCEEEEEE
Confidence 33 2 346787775
No 195
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.60 E-value=1.5e-13 Score=143.78 Aligned_cols=233 Identities=7% Similarity=-0.085 Sum_probs=165.6
Q ss_pred CeEEEEECCCCCEEE-EEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceee
Q 003279 596 WITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 674 (834)
Q Consensus 596 ~I~~l~fspdg~~La-tgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~ 674 (834)
...++++++++++++ +.+.++.|.+||..+... ......+...+.++++++++. ++++.. ++.|.+||........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-TVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSCCEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc-ceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCceEee
Confidence 678999999998777 446788999999865432 111123345688999999877 555555 8899999987654432
Q ss_pred Ee-ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003279 675 VF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 752 (834)
Q Consensus 675 ~~-~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 752 (834)
.. .....+..+++++++..+++...++.|.+||..+.............+.+++++++|+++++.. ++.|.+||....
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~ 181 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 181 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence 21 1225688999999988666666678999998766544333223334678999999999777766 789999998765
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEec-cCCCCeEEEEEeCCCCEEEEEecCCcEE
Q 003279 753 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVASASHDKCVK 831 (834)
Q Consensus 753 ~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~-~h~~~V~~lafspdg~~LaSgs~DG~I~ 831 (834)
. ...........+..++++++|..+++...++.|.+||..+....... .+...+.+++++++|+++++...++.|+
T Consensus 182 ~---~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~ 258 (270)
T 1rwi_B 182 N---QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV 258 (270)
T ss_dssp C---EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred c---eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEE
Confidence 2 22222223367889999999965555555779999999776554333 3346789999999999888888999999
Q ss_pred EeC
Q 003279 832 IWK 834 (834)
Q Consensus 832 IWd 834 (834)
+|+
T Consensus 259 ~~~ 261 (270)
T 1rwi_B 259 KLT 261 (270)
T ss_dssp EEC
T ss_pred EEc
Confidence 985
No 196
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.57 E-value=8.9e-13 Score=140.46 Aligned_cols=240 Identities=10% Similarity=0.035 Sum_probs=178.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEeccCC-CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccC-CCCe
Q 003279 563 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-STTV 640 (834)
Q Consensus 563 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~-~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h-~~~V 640 (834)
.+++|++++.|+.|.+||.++++.+..+..+. ..+.++.++|+|++|+ +.++.|+.||. +++. +..+..+ ...+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~-~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRE-LWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCE-EEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCE-EEEEcCCCCccc
Confidence 45789999999999999999999999998776 5789999999999888 45788999999 5554 5555544 3578
Q ss_pred EEEEEccCCCcEEEEEeC-CCcEEEEECCCCceeeEeecCC-------CeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003279 641 MSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQS-------GATQMRFQPRLGRILAAAIENYISILDVETQV 712 (834)
Q Consensus 641 ~sl~fspdg~~llasgs~-Dg~I~lwDl~s~~~i~~~~~~~-------~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~ 712 (834)
.++.+.++|..++ +.+. ++.|..+|. +++.+..+.... ....+.+.++++++++...++.|.+||.+ ++
T Consensus 80 ~~~~~~~dG~~lv-~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~ 156 (276)
T 3no2_A 80 QTARILPDGNALV-AWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ 156 (276)
T ss_dssp EEEEECTTSCEEE-EEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cccEECCCCCEEE-EecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence 8999999988555 4444 778888886 688777766422 24456788999999998889999999998 99
Q ss_pred EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC------CceEEEEEeCCCCEEEEEEc
Q 003279 713 CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG------NKFHSCVFHPTFPSLLVIGC 785 (834)
Q Consensus 713 ~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~------~~I~svafspdg~~L~sgs~ 785 (834)
.+.++... ..+.++.+.++|.+++++. ++.|..+|..++ +.+..+.... ..+..+...++|..+++...
T Consensus 157 ~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG---~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~ 232 (276)
T 3no2_A 157 LLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN---RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQ 232 (276)
T ss_dssp EEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTC---CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEEC
T ss_pred EEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC---cEEEEecCCCCCCccccccccceEcCCCCEEEEecc
Confidence 99888754 4566788899999999888 668999999888 5666665332 23788889999987766532
Q ss_pred C--------CeEEEEEC-CCCeEE-Eecc--CCCCeEEEE
Q 003279 786 Y--------ETLELWNM-TENKTL-TLSA--HDKLVSSLA 813 (834)
Q Consensus 786 d--------g~I~Iwdl-~~~~~~-~l~~--h~~~V~~la 813 (834)
. +..+++++ .+++++ .+.. .-+.|..+|
T Consensus 233 g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 233 GHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp TTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred CccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 1 23356665 456655 3332 234455554
No 197
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.57 E-value=2.1e-12 Score=138.16 Aligned_cols=239 Identities=10% Similarity=0.085 Sum_probs=169.7
Q ss_pred CCCCCeEEEEEcCCCCEEEE-------EeCCCcEEEEeCCCCeEEEEec----cCCCCeEEEEECCC-CCEEEEEeCCCe
Q 003279 550 ASTSKVESCHFSPDGKLLAT-------GGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPS-LSRLATSSADRT 617 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Las-------gs~Dg~I~IWd~~t~~~~~~l~----~h~~~I~~l~fspd-g~~Latgs~Dg~ 617 (834)
..-....+++|+++|.++++ +..++.|.+||..+++...... ++...+.+++++++ ++++++. .+..
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~ 93 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLG 93 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTTE
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCCC
Confidence 33445789999999988887 5778999999988877653322 24567899999999 6655544 4557
Q ss_pred EEEEecCCCCceeee-ecc----CCCCeEEEEEccCCCcEEEEEeCC---------------CcEEEEECCCCceeeEee
Q 003279 618 VRVWDTENPDYSLRT-FTG----HSTTVMSLDFHPSKEDLLCSCDNN---------------SEIRYWSINNGSCAGVFK 677 (834)
Q Consensus 618 I~IWDl~s~~~~i~~-~~~----h~~~V~sl~fspdg~~llasgs~D---------------g~I~lwDl~s~~~i~~~~ 677 (834)
|.+||.. +.. ... ... ....+.++++++++. ++++...+ +.|..||.. ++......
T Consensus 94 l~~~d~~-g~~-~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~ 169 (314)
T 1pjx_A 94 LLVVQTD-GTF-EEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT 169 (314)
T ss_dssp EEEEETT-SCE-EECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred EEEEeCC-CCE-EEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence 9999988 543 222 111 124588999999986 55455444 568888876 65554444
Q ss_pred cCCCeeEEEEe----cCCCEEEEEE-cCCeEEEEECC-CCe-----EEEEEeCCC-CCEEEEEEcCCCCEEEEEe-CCeE
Q 003279 678 CQSGATQMRFQ----PRLGRILAAA-IENYISILDVE-TQV-----CRLKLQGHK-NQVHSVCWNTSGEYLASVS-DELV 744 (834)
Q Consensus 678 ~~~~i~~l~~s----p~g~~ll~~s-~dg~I~iwDl~-t~~-----~~~~l~~h~-~~I~sl~~spdg~~Lasgs-Dg~I 744 (834)
.......++++ ++++.++++. .++.|.+||+. ++. ....+..+. ..+..++++++|.++++.. ++.|
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i 249 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI 249 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence 44567889999 9987776665 46899999986 443 223333343 5688999999999888876 7899
Q ss_pred EEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCC
Q 003279 745 RVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTE 796 (834)
Q Consensus 745 ~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~-dg~I~Iwdl~~ 796 (834)
.+||..++ ..+..+..+...+.+++|++++..|++++. ++.|..|++..
T Consensus 250 ~~~d~~~g---~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 250 EVFGPDGG---QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEECTTCB---SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEcCCCC---cEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99998765 334445555578999999999996766654 56899999865
No 198
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.56 E-value=2.6e-13 Score=164.52 Aligned_cols=245 Identities=12% Similarity=0.048 Sum_probs=167.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCe--------
Q 003279 551 STSKVESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-------- 617 (834)
Q Consensus 551 H~~~V~sl~fSpdg~~Lasgs~D-----g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~-------- 617 (834)
|+..+..++|||||++||.++.+ ..|++||+.+++.+... .+...+..++|+|| +.|+.++.|+.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 44468899999999999987654 46999999999876532 12222368899999 99998887654
Q ss_pred ------EEEEecCCCCce-eeee--ccCCCCeEEEEEccCCCcEEEEEeC----CCcEEEEECCCC--c-eeeEeecCCC
Q 003279 618 ------VRVWDTENPDYS-LRTF--TGHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINNG--S-CAGVFKCQSG 681 (834)
Q Consensus 618 ------I~IWDl~s~~~~-i~~~--~~h~~~V~sl~fspdg~~llasgs~----Dg~I~lwDl~s~--~-~i~~~~~~~~ 681 (834)
|++|++.++... ...+ ..+...+..+.|+|||+.+++++.. ...|++||+.++ + ..........
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 318 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA 318 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence 899999775521 1222 2333468899999999977766653 348999999877 4 3333333334
Q ss_pred eeEEEEecCCCEEEEEEcC----CeEEEEECCCC--eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcC-CCC
Q 003279 682 ATQMRFQPRLGRILAAAIE----NYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG-SGS 753 (834)
Q Consensus 682 i~~l~~sp~g~~ll~~s~d----g~I~iwDl~t~--~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~-s~~ 753 (834)
+... ++++++.|++.+.+ +.|.+||+.++ .....+..+...+.+++|+ ++.++++.. |+..+||.+. .+
T Consensus 319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g- 395 (741)
T 1yr2_A 319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG- 395 (741)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS-
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC-
Confidence 4444 45889999888764 45999999884 3444445455567778887 555666666 8876666554 23
Q ss_pred CceeEEEeec-CCCceEEEEEeCCCCEEEEEEc----CCeEEEEECCCCeEEEe
Q 003279 754 KGECIHELSC-TGNKFHSCVFHPTFPSLLVIGC----YETLELWNMTENKTLTL 802 (834)
Q Consensus 754 ~~~~i~~~~~-~~~~I~svafspdg~~L~sgs~----dg~I~Iwdl~~~~~~~l 802 (834)
.....+.. ....+..+.++|++..|+.... .+.|++||+.+++...+
T Consensus 396 --~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l 447 (741)
T 1yr2_A 396 --KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW 447 (741)
T ss_dssp --CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred --CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 34445543 3567888999999886664433 25899999998875544
No 199
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.56 E-value=2.5e-13 Score=163.49 Aligned_cols=268 Identities=11% Similarity=-0.016 Sum_probs=174.0
Q ss_pred cCCCCEEEEEeCCC-----cEEEEeCCCCeEEEEec------cCCCCeEEEEECCCCCEEEEE-----eCCCeEEEEecC
Q 003279 561 SPDGKLLATGGHDK-----KAVLWCTESFTVKSTLE------EHTQWITDVRFSPSLSRLATS-----SADRTVRVWDTE 624 (834)
Q Consensus 561 Spdg~~Lasgs~Dg-----~I~IWd~~t~~~~~~l~------~h~~~I~~l~fspdg~~Latg-----s~Dg~I~IWDl~ 624 (834)
+|+|++++....++ .|++.+...++....+. +|...+.+++|+|||++||.+ +.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 37899888776544 24444554554433332 455679999999999999843 345689999999
Q ss_pred CCCce-eeeeccCCCCeEEEEEccCCCcEEEEEeCCCc-------------EEEEECCCCce--eeEeec---CCCeeEE
Q 003279 625 NPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-------------IRYWSINNGSC--AGVFKC---QSGATQM 685 (834)
Q Consensus 625 s~~~~-i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~-------------I~lwDl~s~~~--i~~~~~---~~~i~~l 685 (834)
++... ...+.. .....++|+||++.++++ +.|.. |++|++.++.. ...+.. ...+..+
T Consensus 156 tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~-~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~ 232 (695)
T 2bkl_A 156 SGEWSKVDVIEG--GKYATPKWTPDSKGFYYE-WLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS 232 (695)
T ss_dssp TCCBCSSCCBSC--CTTCCCEECTTSSEEEEE-ECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred CCCCcCCcccCc--ccccceEEecCCCEEEEE-EecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence 87642 111111 112689999999866654 44444 99999998763 222222 2457899
Q ss_pred EEecCCCEEEEEEcCC----eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCcee
Q 003279 686 RFQPRLGRILAAAIEN----YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGEC 757 (834)
Q Consensus 686 ~~sp~g~~ll~~s~dg----~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs----Dg~I~IwDl~s~~~~~~ 757 (834)
.|+|+|++|++++.++ .|+++|..++... .+..+...+....| ++|.+++.+. ++.|.+||+.++.....
T Consensus 233 ~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 310 (695)
T 2bkl_A 233 DLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASW 310 (695)
T ss_dssp EECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGC
T ss_pred EECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCC
Confidence 9999999998888766 7888877665433 33345555666666 5555444443 35899999987632112
Q ss_pred EEEeecC-CCceEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCeEEEeccC-CCCeEEEEEeCCCCEEEEEe----cCCc
Q 003279 758 IHELSCT-GNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTLSAH-DKLVSSLAASTVNGMVASAS----HDKC 829 (834)
Q Consensus 758 i~~~~~~-~~~I~svafspdg~~L~sgs~dg~I~Iw--dl~~~~~~~l~~h-~~~V~~lafspdg~~LaSgs----~DG~ 829 (834)
...+..+ ...+..++|+ ++..+++...++..+|| ++..+....+..+ .+.|..++++|++..|+... .++.
T Consensus 311 ~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~ 389 (695)
T 2bkl_A 311 KEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQ 389 (695)
T ss_dssp EEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEE
T ss_pred eEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence 2223322 4567888888 66677777888866666 4444434344444 66788899999998666332 3477
Q ss_pred EEEeC
Q 003279 830 VKIWK 834 (834)
Q Consensus 830 I~IWd 834 (834)
|++||
T Consensus 390 v~~~d 394 (695)
T 2bkl_A 390 IYKTS 394 (695)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88875
No 200
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.55 E-value=2.7e-11 Score=127.93 Aligned_cols=238 Identities=11% Similarity=0.038 Sum_probs=168.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE-EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 628 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~-~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~ 628 (834)
.+...+.+++++++|.++++...++.|..||.. ++.. ..+......+.++++.+++.++++...++.|.+||. ++..
T Consensus 54 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~ 131 (299)
T 2z2n_A 54 TPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI 131 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE
T ss_pred cccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE
Confidence 345679999999999988877778899999976 3332 223335567899999999988888777889999998 4443
Q ss_pred eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeE-ee-cCCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 003279 629 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK-CQSGATQMRFQPRLGRILAAAIENYISIL 706 (834)
Q Consensus 629 ~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~-~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iw 706 (834)
.......+...+.++++.+++. ++++...++.|.+||. +++.... .. ....+..+++++++..+++...++.|.+|
T Consensus 132 ~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 209 (299)
T 2z2n_A 132 REYELPNKGSYPSFITLGSDNA-LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRI 209 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred EEecCCCCCCCCceEEEcCCCC-EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEE
Confidence 2222333456789999999875 6656666789999999 6665442 11 23457889999998866555567899999
Q ss_pred ECCCCeEEE-EEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeE-EEeecCCCceEEEEEeCCCCEEEEE
Q 003279 707 DVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI-HELSCTGNKFHSCVFHPTFPSLLVI 783 (834)
Q Consensus 707 Dl~t~~~~~-~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i-~~~~~~~~~I~svafspdg~~L~sg 783 (834)
|. ++.... .+..+...+.+++++++|.++++.. ++.|.+||. ++ ... ..+..+...+.++++ +++. |+++
T Consensus 210 ~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g---~~~~~~~~~~~~~~~~i~~-~~g~-l~v~ 282 (299)
T 2z2n_A 210 TT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NN---IIEEYPIQIKSAEPHGICF-DGET-IWFA 282 (299)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TT---EEEEEECSSSSCCEEEEEE-CSSC-EEEE
T ss_pred CC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CC---ceEEEeCCCCCCccceEEe-cCCC-EEEE
Confidence 99 665432 2333556799999999999777765 789999998 33 221 123344567889999 8777 4455
Q ss_pred EcCCeEEEEECCCCe
Q 003279 784 GCYETLELWNMTENK 798 (834)
Q Consensus 784 s~dg~I~Iwdl~~~~ 798 (834)
+..+.|..++..+++
T Consensus 283 ~~~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 283 MECDKIGKLTLIKDN 297 (299)
T ss_dssp ETTTEEEEEEEC---
T ss_pred ecCCcEEEEEcCccc
Confidence 546778888876654
No 201
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.55 E-value=3.4e-11 Score=133.98 Aligned_cols=235 Identities=12% Similarity=0.067 Sum_probs=169.7
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeccC-------CCCeEEEEECCCCCEEEEEeC--CCe
Q 003279 557 SCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLSRLATSSA--DRT 617 (834)
Q Consensus 557 sl~fSpdg~~Lasgs----------~Dg~I~IWd~~t~~~~~~l~~h-------~~~I~~l~fspdg~~Latgs~--Dg~ 617 (834)
.++|+|||++|+++. .++.|.+||..+++.+..+... ......++|+|||++|+++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 899999999999886 3678999999998888776432 123458999999999999874 478
Q ss_pred EEEEecCCCCceeee-eccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-----c-CCC-eeEEEEec
Q 003279 618 VRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----C-QSG-ATQMRFQP 689 (834)
Q Consensus 618 I~IWDl~s~~~~i~~-~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-----~-~~~-i~~l~~sp 689 (834)
|.++| .+++. +.. +.. . .|+.+.|++...+++.+.||.+.+||. +++.+.... . ... .....+.+
T Consensus 150 v~viD-~t~~~-~~~~i~~-~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~ 222 (373)
T 2mad_H 150 VGLVV-QGGSS-DDQLLSS-P---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQAN 222 (373)
T ss_pred EEEEE-CCCCE-EeEEcCC-C---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEe
Confidence 99999 87654 444 322 1 235566777777778888999999999 887764332 1 111 12345677
Q ss_pred CCCEEEEEEcCCeEEEEECCCCe--EEEEEeC----------CCCCEEEEEEcCCCCEEEEEe-----------CCeEEE
Q 003279 690 RLGRILAAAIENYISILDVETQV--CRLKLQG----------HKNQVHSVCWNTSGEYLASVS-----------DELVRV 746 (834)
Q Consensus 690 ~g~~ll~~s~dg~I~iwDl~t~~--~~~~l~~----------h~~~I~sl~~spdg~~Lasgs-----------Dg~I~I 746 (834)
+++.++..+.++.+.++|+.... .+..+.- .......++++++++.+++.. .+.|.+
T Consensus 223 ~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~V 302 (373)
T 2mad_H 223 KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS 302 (373)
T ss_pred cCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEE
Confidence 77776666688999999997652 2222221 122344578899998877754 247999
Q ss_pred EEcCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCeEEEe
Q 003279 747 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENKTLTL 802 (834)
Q Consensus 747 wDl~s~~~~~~i~~~~~~~~~I~svafspdg~-~L~sgs-~dg~I~Iwdl~~~~~~~l 802 (834)
+|+.+. +.+..+.. ......++|+|||+ .++++. .++.|.+||+.+++.+..
T Consensus 303 ID~~t~---~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 303 VTGLVG---QTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EECCCC---EEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 999887 66666643 44688999999999 677766 478999999999998854
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.52 E-value=4.4e-12 Score=135.59 Aligned_cols=238 Identities=8% Similarity=-0.015 Sum_probs=163.8
Q ss_pred CCCCeEEEEECCCCCEEEE-------EeCCCeEEEEecCCCCceeeee---ccCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 003279 593 HTQWITDVRFSPSLSRLAT-------SSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEI 662 (834)
Q Consensus 593 h~~~I~~l~fspdg~~Lat-------gs~Dg~I~IWDl~s~~~~i~~~---~~h~~~V~sl~fspdg~~llasgs~Dg~I 662 (834)
.-....+++|++++.++++ +..++.|.+||..+++...... .++...+.++++++++..++++.. +..|
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l 94 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGL 94 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCE
Confidence 3445789999999988887 5778899999987765421111 124567899999998333554443 4579
Q ss_pred EEEECCCCceeeE-eec-----CCCeeEEEEecCCCEEEEEEcC---------------CeEEEEECCCCeEEEEEeCCC
Q 003279 663 RYWSINNGSCAGV-FKC-----QSGATQMRFQPRLGRILAAAIE---------------NYISILDVETQVCRLKLQGHK 721 (834)
Q Consensus 663 ~lwDl~s~~~i~~-~~~-----~~~i~~l~~sp~g~~ll~~s~d---------------g~I~iwDl~t~~~~~~l~~h~ 721 (834)
.+||.. ++.... ... ...+.++++++++..+++...+ +.|..||.. ++..... .+.
T Consensus 95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~ 171 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAF 171 (314)
T ss_dssp EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEE
T ss_pred EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCC
Confidence 999998 765443 221 1347899999998877666554 578888876 5443332 234
Q ss_pred CCEEEEEEc----CCCCEEEEEe--CCeEEEEEcC-CCCC--ceeEEEeecCC-CceEEEEEeCCCCEEEEEEcCCeEEE
Q 003279 722 NQVHSVCWN----TSGEYLASVS--DELVRVWSIG-SGSK--GECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETLEL 791 (834)
Q Consensus 722 ~~I~sl~~s----pdg~~Lasgs--Dg~I~IwDl~-s~~~--~~~i~~~~~~~-~~I~svafspdg~~L~sgs~dg~I~I 791 (834)
.....++|+ ++++.|+++. ++.|.+||+. .+.. ...+..+..+. ..+..++++++|..+++...++.|.+
T Consensus 172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~ 251 (314)
T 1pjx_A 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV 251 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEE
Confidence 457889999 9997665554 7899999986 3311 01222333333 56788999999987777777889999
Q ss_pred EECCCCeEE-EeccCCCCeEEEEEeCCCCEEE-EEecCCcEEEeC
Q 003279 792 WNMTENKTL-TLSAHDKLVSSLAASTVNGMVA-SASHDKCVKIWK 834 (834)
Q Consensus 792 wdl~~~~~~-~l~~h~~~V~~lafspdg~~La-Sgs~DG~I~IWd 834 (834)
||..+++.+ .+..+...+.+++|+++++.|+ +...++.|..|+
T Consensus 252 ~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 252 FGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp ECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 999866554 4445667899999999999554 445567787764
No 203
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.51 E-value=1.8e-12 Score=145.98 Aligned_cols=266 Identities=8% Similarity=0.045 Sum_probs=188.7
Q ss_pred CCCCEEEEEeCC-----CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEe----------CCCeEEEEecCCC
Q 003279 562 PDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTENP 626 (834)
Q Consensus 562 pdg~~Lasgs~D-----g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs----------~Dg~I~IWDl~s~ 626 (834)
+++++++++... +.|.++|..+++.+.++..-..+ .++++||+++|+++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 467766666542 69999999999999999766666 899999999988876 3678999999987
Q ss_pred Cceeeeec-c------CCCCeEEEEEccCCCcEEEEEeC-CCcEEEEECCCCceeeEeecCCCeeEEEEecCC-CEEEEE
Q 003279 627 DYSLRTFT-G------HSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAA 697 (834)
Q Consensus 627 ~~~i~~~~-~------h~~~V~sl~fspdg~~llasgs~-Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g-~~ll~~ 697 (834)
+. +..+. + .......+.|+||+++++++... ++.|.++|+.+++.+..+..... ....|++ ..+++.
T Consensus 160 ~v-v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LP-IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMN 235 (426)
T ss_dssp CE-EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEE
T ss_pred cE-EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEE
Confidence 64 43332 2 12345678999999977766543 68999999999999988886432 3344433 566777
Q ss_pred EcCCeEEEEECCCCeEEEEE----eCCCCCE-EEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec--------
Q 003279 698 AIENYISILDVETQVCRLKL----QGHKNQV-HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-------- 763 (834)
Q Consensus 698 s~dg~I~iwDl~t~~~~~~l----~~h~~~I-~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-------- 763 (834)
+.||.+.+.++.+++..... .....++ ..+.|.+++..++... .+.|.+.|+..... ..+..+..
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~-~v~~~~~~~~~~~i~~ 314 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA-TFRAPIEALTEAERAD 314 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE-EECCCEESSCTTTGGG
T ss_pred cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce-EEeeeeeecccccccc
Confidence 78899888888666544321 1111121 2356789888777767 88999999876421 11111110
Q ss_pred --CCCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCC-EEEEEe-cCCc
Q 003279 764 --TGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKC 829 (834)
Q Consensus 764 --~~~~I~svafspdg~~L~sgs~----------dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~-~LaSgs-~DG~ 829 (834)
.......+++++++..+++... .+.|.++|+.+.+.+....-.....+++|+||++ +++++. .++.
T Consensus 315 g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~ 394 (426)
T 3c75_H 315 DWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQT 394 (426)
T ss_dssp TEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTE
T ss_pred ccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCe
Confidence 0011223689999998888753 3479999999999885444444689999999999 888888 5899
Q ss_pred EEEeC
Q 003279 830 VKIWK 834 (834)
Q Consensus 830 I~IWd 834 (834)
|.|+|
T Consensus 395 VsVID 399 (426)
T 3c75_H 395 LHIYD 399 (426)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99986
No 204
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.49 E-value=8.8e-12 Score=138.22 Aligned_cols=252 Identities=12% Similarity=0.130 Sum_probs=175.2
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeccCC-------CCeEEEEECCCCCEEEEEeC--CCe
Q 003279 557 SCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHT-------QWITDVRFSPSLSRLATSSA--DRT 617 (834)
Q Consensus 557 sl~fSpdg~~Lasgs----------~Dg~I~IWd~~t~~~~~~l~~h~-------~~I~~l~fspdg~~Latgs~--Dg~ 617 (834)
.++++|||++|++++ .++.|.+||..+++.+.++.... .....++|+|||++|+++.. ++.
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~ 161 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 161 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence 399999999888775 36789999999999998875321 24567999999999998874 689
Q ss_pred EEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-CceeeEeec-----CCCe-eEEEEecC
Q 003279 618 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKC-----QSGA-TQMRFQPR 690 (834)
Q Consensus 618 I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s-~~~i~~~~~-----~~~i-~~l~~sp~ 690 (834)
|.++|+.+.+. +..+.... |..+.|.+...+++.+.||.+.++++.+ ++....... ...+ ....|.+.
T Consensus 162 VsVID~~t~~v-v~tI~v~g----~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~ 236 (386)
T 3sjl_D 162 VGVVDLEGKAF-KRMLDVPD----CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK 236 (386)
T ss_dssp EEEEETTTTEE-EEEEECCS----EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETT
T ss_pred EEEEECCCCcE-EEEEECCC----cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcC
Confidence 99999998764 44443211 1223455555666777799999999976 554322111 0111 12456533
Q ss_pred CCEEEEEEcCCeEEEEECCCCe--EEEEEe---------C-CCCCEEEEEEcCCCCEEEEEe-C----------CeEEEE
Q 003279 691 LGRILAAAIENYISILDVETQV--CRLKLQ---------G-HKNQVHSVCWNTSGEYLASVS-D----------ELVRVW 747 (834)
Q Consensus 691 g~~ll~~s~dg~I~iwDl~t~~--~~~~l~---------~-h~~~I~sl~~spdg~~Lasgs-D----------g~I~Iw 747 (834)
.+.++..+.+|.|+++|+.+.. ....+. + ....+..+++++++..++... + ++|.++
T Consensus 237 dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~vi 316 (386)
T 3sjl_D 237 AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVL 316 (386)
T ss_dssp TTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred CCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEE
Confidence 3455567778999999997653 332222 0 112333577799998888764 1 479999
Q ss_pred EcCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEEc-CCeEEEEECCCCeEEEeccCCCCeEEEEEeCC
Q 003279 748 SIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGC-YETLELWNMTENKTLTLSAHDKLVSSLAASTV 817 (834)
Q Consensus 748 Dl~s~~~~~~i~~~~~~~~~I~svafspdg~-~L~sgs~-dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspd 817 (834)
|+.+. +.+..+.. ...+..+++++|++ .|+++.. ++.|.++|..+++.+......+....|.+++|
T Consensus 317 D~~t~---kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 317 DAKTG---ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp ETTTC---CEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred ECCCC---eEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 99998 55655554 23678999999996 6776554 78999999999999866666666667777776
No 205
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.49 E-value=2e-12 Score=156.88 Aligned_cols=268 Identities=12% Similarity=0.021 Sum_probs=172.1
Q ss_pred cCCCCEEEEEeCCCc---EEEE--eCC---CCeEEEEe------ccCCCCeEEEEECCCCCEEEEEeCC-----CeEEEE
Q 003279 561 SPDGKLLATGGHDKK---AVLW--CTE---SFTVKSTL------EEHTQWITDVRFSPSLSRLATSSAD-----RTVRVW 621 (834)
Q Consensus 561 Spdg~~Lasgs~Dg~---I~IW--d~~---t~~~~~~l------~~h~~~I~~l~fspdg~~Latgs~D-----g~I~IW 621 (834)
+|||++++....++. ..|| +.. .++....+ .+|...+..++|+|||++|+.++.+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 389998887765443 4455 443 33333221 2344468899999999999887654 469999
Q ss_pred ecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC-------------cEEEEECCCCce--eeEeecC---CCee
Q 003279 622 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-------------EIRYWSINNGSC--AGVFKCQ---SGAT 683 (834)
Q Consensus 622 Dl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg-------------~I~lwDl~s~~~--i~~~~~~---~~i~ 683 (834)
|+.+++. +.. ..+...+..++|+|| +.++++...+. .|++|++.++.. ...+... ..+.
T Consensus 195 dl~tg~~-~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~ 271 (741)
T 1yr2_A 195 GVADGKP-LAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGH 271 (741)
T ss_dssp ETTTCCE-EEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE
T ss_pred ECCCCCC-CCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEE
Confidence 9998764 221 112223467899999 77776654322 399999987753 2233322 2478
Q ss_pred EEEEecCCCEEEEEEcCC-----eEEEEECCCC--eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C----CeEEEEEcCC
Q 003279 684 QMRFQPRLGRILAAAIEN-----YISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-D----ELVRVWSIGS 751 (834)
Q Consensus 684 ~l~~sp~g~~ll~~s~dg-----~I~iwDl~t~--~~~~~l~~h~~~I~sl~~spdg~~Lasgs-D----g~I~IwDl~s 751 (834)
.+.|+|+|++|++.+.++ .|++||+.++ .+...+..+...+.... +|+|..|+..+ + +.|.+||+.+
T Consensus 272 ~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~ 350 (741)
T 1yr2_A 272 GASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSG 350 (741)
T ss_dssp EEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred EEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 999999999999888654 8999999887 31445555555555554 48888887766 2 3599999887
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCeEEEecc-CCCCeEEEEEeCCCCEEE-EEe--
Q 003279 752 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTLSA-HDKLVSSLAASTVNGMVA-SAS-- 825 (834)
Q Consensus 752 ~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iw--dl~~~~~~~l~~-h~~~V~~lafspdg~~La-Sgs-- 825 (834)
+. ......+..+...+..++|+ ++..+++...++..+|| ++..+....+.. +.+.|..++++|++..|+ +.+
T Consensus 351 ~~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~ 428 (741)
T 1yr2_A 351 ST-PRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSF 428 (741)
T ss_dssp SS-CEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEET
T ss_pred Cc-cccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCC
Confidence 42 12333334444556677887 55566777778755555 554444444443 467789999999987555 322
Q ss_pred -cCCcEEEeC
Q 003279 826 -HDKCVKIWK 834 (834)
Q Consensus 826 -~DG~I~IWd 834 (834)
..+.|++||
T Consensus 429 ~~P~~i~~~d 438 (741)
T 1yr2_A 429 TQPATVLALD 438 (741)
T ss_dssp TEEEEEEEEE
T ss_pred CCCCEEEEEE
Confidence 347788775
No 206
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.48 E-value=1.7e-11 Score=130.44 Aligned_cols=215 Identities=12% Similarity=0.041 Sum_probs=166.1
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWC 580 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~-~~V~sl~fSpdg~~Lasgs~Dg~I~IWd 580 (834)
.++++++++.|+.|.+|...+. .. +..+..|. ..+.++.++|+|++|+ +.++.|..||
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG----------------~~---~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d 62 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK----------------EI---VWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMIT 62 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT----------------EE---EEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEEC
T ss_pred CCcEEEeeCCCCEEEEEECCCC----------------eE---EEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEEC
Confidence 3578899999999999954322 21 23333444 4688999999999888 4578899999
Q ss_pred CCCCeEEEEeccCC-CCeEEEEECCCCCEEEEEeC-CCeEEEEecCCCCceeeeec------cCCCCeEEEEEccCCCcE
Q 003279 581 TESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFT------GHSTTVMSLDFHPSKEDL 652 (834)
Q Consensus 581 ~~t~~~~~~l~~h~-~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~s~~~~i~~~~------~h~~~V~sl~fspdg~~l 652 (834)
. +++.+..+..+. ..+.++.+.++|++|++.+. ++.|..+|.+ ++. +..+. .+......+++.++++ +
T Consensus 63 ~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~-l~~~~~~~~~~~~~~~~~~v~~~~~G~-~ 138 (276)
T 3no2_A 63 R-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-GEV-LSKTEFETGIERPHAQFRQINKNKKGN-Y 138 (276)
T ss_dssp T-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SCE-EEEEEECCSCSSGGGSCSCCEECTTSC-E
T ss_pred C-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC-CCE-EEEEeccCCCCcccccccCceECCCCC-E
Confidence 8 899998887653 57889999999999999887 7788888764 343 33322 1223455667888877 6
Q ss_pred EEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC------CCEEE
Q 003279 653 LCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK------NQVHS 726 (834)
Q Consensus 653 lasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~------~~I~s 726 (834)
+++...++.|.+||.. ++.+..+.....+..+.+.++++.++++..++.|..||..+++.+.++..+. ..+.+
T Consensus 139 lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~ 217 (276)
T 3no2_A 139 LVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQ 217 (276)
T ss_dssp EEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEE
T ss_pred EEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcccccccc
Confidence 6688889999999998 9999999887778888899999999888888899999999999999886432 23788
Q ss_pred EEEcCCCCEEEEEeCC
Q 003279 727 VCWNTSGEYLASVSDE 742 (834)
Q Consensus 727 l~~spdg~~LasgsDg 742 (834)
+...++|.++++..+|
T Consensus 218 ~~~~~~G~i~v~~~~g 233 (276)
T 3no2_A 218 LFPLQNGGLYICNWQG 233 (276)
T ss_dssp EEECTTSCEEEEEECT
T ss_pred ceEcCCCCEEEEeccC
Confidence 8899999998887543
No 207
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.46 E-value=2.9e-12 Score=154.29 Aligned_cols=245 Identities=13% Similarity=0.041 Sum_probs=168.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-----CCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCe-------
Q 003279 550 ASTSKVESCHFSPDGKLLATGG-----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT------- 617 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs-----~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~------- 617 (834)
+|...|..++|||||++||.+. .+..|+|||+++++.+... .+......++|+ |++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 4555688999999999998643 2357999999999866431 111113578899 9999999988743
Q ss_pred ------EEEEecCCCCc---eeeeecc-CCCCeEEEEEccCCCcEEEEEeCC---CcEEEEECCCCc-eeeEeec-CCCe
Q 003279 618 ------VRVWDTENPDY---SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGS-CAGVFKC-QSGA 682 (834)
Q Consensus 618 ------I~IWDl~s~~~---~i~~~~~-h~~~V~sl~fspdg~~llasgs~D---g~I~lwDl~s~~-~i~~~~~-~~~i 682 (834)
|++|++.++.. .+..... |...+..+.|+||++.++++.+.+ ..|+++|+.++. ....+.. ....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 99999987653 2222233 445678899999999888776533 589999998763 2333333 3333
Q ss_pred eEEEEecCCCEEEEEEcC----CeEEEEECCCCeE--EEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCC
Q 003279 683 TQMRFQPRLGRILAAAIE----NYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSG 752 (834)
Q Consensus 683 ~~l~~sp~g~~ll~~s~d----g~I~iwDl~t~~~--~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~ 752 (834)
... ++++++.|++.+.. +.|.++|+.++.. ...+..|...+. .|++++.+|+... ++ .|++||+..+
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 333 67777877766653 5799999988643 234555665555 8889999888776 54 7899988744
Q ss_pred CCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCeEEEec
Q 003279 753 SKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTLS 803 (834)
Q Consensus 753 ~~~~~i~~~~~-~~~~I~svafspdg~~L~sgs~d----g~I~Iwdl~~~~~~~l~ 803 (834)
....+.. ....+..+.+++++..|+....+ +.|+.||+.+++...+.
T Consensus 361 ----~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~ 412 (693)
T 3iuj_A 361 ----RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYR 412 (693)
T ss_dssp ----EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEE
T ss_pred ----eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEE
Confidence 2333332 34557777888888877776655 68999999888755443
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.45 E-value=1.7e-10 Score=121.72 Aligned_cols=234 Identities=8% Similarity=-0.047 Sum_probs=168.3
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc
Q 003279 592 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 671 (834)
Q Consensus 592 ~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~ 671 (834)
.....+.++++.+++.++++...++.|.+||.. +......+..+...+.++++.+++. ++++...++.|..||.. ++
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGD-IWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SC
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCC-EEEEecCCCeEEEECCC-CC
Confidence 445678999999999988877778999999988 4432222333446789999998876 55565557889999988 55
Q ss_pred eeeEeec---CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEE-EEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEE
Q 003279 672 CAGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCR-LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRV 746 (834)
Q Consensus 672 ~i~~~~~---~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~-~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~I 746 (834)
.. .+.. ...+..+++.+++..+++...++.|..||.. ++.. ..+......+.+++++++++++++.. ++.|.+
T Consensus 94 ~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 171 (300)
T 2qc5_A 94 FT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR 171 (300)
T ss_dssp EE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred eE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence 43 3332 3568899999988876666667899999998 5444 23333456789999999999777666 778999
Q ss_pred EEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE--eccCCCCeEEEEEeCCCCEEEEE
Q 003279 747 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT--LSAHDKLVSSLAASTVNGMVASA 824 (834)
Q Consensus 747 wDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~--l~~h~~~V~~lafspdg~~LaSg 824 (834)
||. ++. ............+..+++++++..+++....+.|.+||. +++... ...+...+.+++++++|.++++.
T Consensus 172 ~~~-~g~--~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 172 ITN-TGK--LEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp ECT-TCC--EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred ECC-CCc--EEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEec
Confidence 998 442 111222234456889999999975555555668999998 555443 33455678999999999977776
Q ss_pred ecCCcEEEeC
Q 003279 825 SHDKCVKIWK 834 (834)
Q Consensus 825 s~DG~I~IWd 834 (834)
..++.|.+||
T Consensus 248 ~~~~~i~~~~ 257 (300)
T 2qc5_A 248 WGANQIGRIT 257 (300)
T ss_dssp TTTTEEEEEC
T ss_pred cCCCeEEEEC
Confidence 6678888775
No 209
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.45 E-value=1.4e-10 Score=124.31 Aligned_cols=229 Identities=10% Similarity=0.036 Sum_probs=156.8
Q ss_pred EeccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 003279 589 TLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 667 (834)
Q Consensus 589 ~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl 667 (834)
.+..+.....+..|++++ .++++...++.|+.||..++.. ..+ .....+.++++++++. ++++ . +..|.+||.
T Consensus 7 ~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~-~~~~~~~~i~~~~dG~-l~v~-~-~~~l~~~d~ 80 (297)
T 3g4e_A 7 VLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV--QRV-TMDAPVSSVALRQSGG-YVAT-I-GTKFCALNW 80 (297)
T ss_dssp EECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEE-ECSSCEEEEEEBTTSS-EEEE-E-TTEEEEEET
T ss_pred EeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE--EEE-eCCCceEEEEECCCCC-EEEE-E-CCeEEEEEC
Confidence 344455567789999964 4566666789999999987653 222 2456799999999988 4433 3 568999999
Q ss_pred CCCceeeEeecC-----CCeeEEEEecCCCEEEEEEcC-----------CeEEEEECCCCeEEEEEeCCCCCEEEEEEcC
Q 003279 668 NNGSCAGVFKCQ-----SGATQMRFQPRLGRILAAAIE-----------NYISILDVETQVCRLKLQGHKNQVHSVCWNT 731 (834)
Q Consensus 668 ~s~~~i~~~~~~-----~~i~~l~~sp~g~~ll~~s~d-----------g~I~iwDl~t~~~~~~l~~h~~~I~sl~~sp 731 (834)
.+++........ ..+..++++++|+.+++.... +.|+.+|.. +.... +..+......++|+|
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~sp 158 (297)
T 3g4e_A 81 KEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSL 158 (297)
T ss_dssp TTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECT
T ss_pred CCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcC
Confidence 988765444321 237789999998865544322 345555543 33322 222344578999999
Q ss_pred CCCEEEEEe--CCeEEEEEcC--CCCCc--eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-Eecc
Q 003279 732 SGEYLASVS--DELVRVWSIG--SGSKG--ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA 804 (834)
Q Consensus 732 dg~~Lasgs--Dg~I~IwDl~--s~~~~--~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~ 804 (834)
+++.|+.+. ++.|.+||+. ++... ..+..+......+..++++++|...++....+.|.+||..+++.+ .+..
T Consensus 159 dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 159 DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL 238 (297)
T ss_dssp TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC
T ss_pred CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC
Confidence 999776655 7899999984 44211 122333334456789999999986666666778999999988876 4555
Q ss_pred CCCCeEEEEEe-CCCCEEEEEe
Q 003279 805 HDKLVSSLAAS-TVNGMVASAS 825 (834)
Q Consensus 805 h~~~V~~lafs-pdg~~LaSgs 825 (834)
+...+++++|. |+++.|+.++
T Consensus 239 p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 239 PVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp SSSBEEEEEEESGGGCEEEEEE
T ss_pred CCCCceEEEEeCCCCCEEEEEc
Confidence 66789999998 8887665544
No 210
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.44 E-value=4.2e-11 Score=134.88 Aligned_cols=230 Identities=10% Similarity=0.020 Sum_probs=162.0
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC--cEEEEECCCCce
Q 003279 595 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSC 672 (834)
Q Consensus 595 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg--~I~lwDl~s~~~ 672 (834)
.....|+|+++++++++...++.|++||..++.. ..+........ ++|++++..++ +++.++ .|.+|+...+..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~--~~~~~~~~~~~-ia~~~~g~~l~-~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV--TTVHPGFKGGK-PAVTKDKQRVY-SIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE--EEEEETCCBCB-CEECTTSSEEE-EEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE--EEeeccCCCCc-eeEecCCCcEE-EEecCCCceEEEEEcCCCce
Confidence 4578999999999777777789999999987543 22222233334 99999988555 454444 899999877655
Q ss_pred eeEe----e-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE----EeCCCCCE--EEEEEcCCCCEEEEEe-
Q 003279 673 AGVF----K-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK----LQGHKNQV--HSVCWNTSGEYLASVS- 740 (834)
Q Consensus 673 i~~~----~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~----l~~h~~~I--~sl~~spdg~~Lasgs- 740 (834)
...+ . ....+.+++++|+++.|+++..++.|+.||..++..... ..++.... ..++|+|++..|+.+.
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 4444 2 335678899999777787777788999999987754332 22222222 3999999644444444
Q ss_pred -CCeEEEEEcCCCCCceeEEEeecC---------------CCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEec
Q 003279 741 -DELVRVWSIGSGSKGECIHELSCT---------------GNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLS 803 (834)
Q Consensus 741 -Dg~I~IwDl~s~~~~~~i~~~~~~---------------~~~I~svafspdg~~L~sgs-~dg~I~Iwdl~~~~~~~l~ 803 (834)
++.|+.|+.... +..+..+ -.....++++++|..+++-. .++.|+.|++.++.+..+.
T Consensus 287 ~~~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 287 NLSSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp TTTEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence 779999987643 2222222 23478999999999555555 5779999998888877665
Q ss_pred cC---------------CCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 804 AH---------------DKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 804 ~h---------------~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
++ -.....|++++++.++++-..++.|+.+
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence 55 2468999999998888887788888765
No 211
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.44 E-value=1.4e-10 Score=124.29 Aligned_cols=232 Identities=13% Similarity=0.109 Sum_probs=159.0
Q ss_pred ecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC
Q 003279 548 IPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 626 (834)
Q Consensus 548 l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~ 626 (834)
+..+..-..+..|++++ .++++...++.|+.||..+++.. .+ .....+.+++++++++++++ . +..|.+||..++
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ 83 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence 33444456789999964 45666667899999999887653 33 24567999999999995554 3 567999999875
Q ss_pred Cceeeeec---cCCCCeEEEEEccCCCcEEEEEeC--------CCcEEEEECCC-CceeeEeecCCCeeEEEEecCCCEE
Q 003279 627 DYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDN--------NSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGRI 694 (834)
Q Consensus 627 ~~~i~~~~---~h~~~V~sl~fspdg~~llasgs~--------Dg~I~lwDl~s-~~~i~~~~~~~~i~~l~~sp~g~~l 694 (834)
........ .....+.+++++|+|..++.+... .....+|.+.. ++.............++|+|+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~l 163 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIF 163 (297)
T ss_dssp EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEE
T ss_pred cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEE
Confidence 53211111 122458899999998744433221 12234444432 4444444444557889999999988
Q ss_pred EEEEc-CCeEEEEEC--CCCeE-----EEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC
Q 003279 695 LAAAI-ENYISILDV--ETQVC-----RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 765 (834)
Q Consensus 695 l~~s~-dg~I~iwDl--~t~~~-----~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~ 765 (834)
+++.. ++.|.+||+ .++.. ...+..+...+..++++++|.+.++.. .+.|.+||..++ +.+..+....
T Consensus 164 yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG---~~~~~i~~p~ 240 (297)
T 3g4e_A 164 YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG---KRLQTVKLPV 240 (297)
T ss_dssp EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC---CEEEEEECSS
T ss_pred EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc---eEEEEEECCC
Confidence 76665 689999987 45532 222333445788999999998887776 778999999877 5667777766
Q ss_pred CceEEEEEe-CCCCEEEEEEcC
Q 003279 766 NKFHSCVFH-PTFPSLLVIGCY 786 (834)
Q Consensus 766 ~~I~svafs-pdg~~L~sgs~d 786 (834)
..+++++|. |+++.|++++..
T Consensus 241 ~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 241 DKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp SBEEEEEEESGGGCEEEEEEBC
T ss_pred CCceEEEEeCCCCCEEEEEcCC
Confidence 789999998 888888777654
No 212
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.42 E-value=1.1e-10 Score=131.52 Aligned_cols=232 Identities=9% Similarity=0.035 Sum_probs=164.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC--eEEEEecCCCCcee
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSL 630 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg--~I~IWDl~s~~~~i 630 (834)
.....|+|+++++++++...++.|++||.+++.......... ... ++|++++..|+++..++ .|.+|+...... .
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-P 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-E
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce-e
Confidence 467899999999977777778999999999887776655433 334 99999999999988866 799998876543 2
Q ss_pred eee----ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeE----eecCCCe--e-EEEEecCCCEEEEEEc
Q 003279 631 RTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKCQSGA--T-QMRFQPRLGRILAAAI 699 (834)
Q Consensus 631 ~~~----~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~----~~~~~~i--~-~l~~sp~g~~ll~~s~ 699 (834)
..+ ......+.+++++|++..+++ +..++.|+.||..++..... ....... . .++|+|+++.|+++..
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 222 224567889999996565665 66788999999987764332 1111222 2 9999997666666654
Q ss_pred -CCeEEEEECCCCeEEEEEeCCC---------------CCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEe
Q 003279 700 -ENYISILDVETQVCRLKLQGHK---------------NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHEL 761 (834)
Q Consensus 700 -dg~I~iwDl~t~~~~~~l~~h~---------------~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~ 761 (834)
.+.|+.||.... +..+.++. .....++++++|.++++-. ++.|++||+.++ . +..+
T Consensus 287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G---~-v~~~ 360 (409)
T 3hrp_A 287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG---Y-VSTV 360 (409)
T ss_dssp TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT---E-EEEE
T ss_pred CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC---E-EEEE
Confidence 689999998754 22333322 4578999999999777654 569999998766 2 2333
Q ss_pred ecC---------------CCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 762 SCT---------------GNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 762 ~~~---------------~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
..+ -.....+++++++..+++-..++.|+.+++
T Consensus 361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 361 AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 322 245788999999765555556668887765
No 213
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.42 E-value=5.5e-12 Score=138.30 Aligned_cols=261 Identities=9% Similarity=-0.012 Sum_probs=171.5
Q ss_pred CCeEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCeEEEEe-------ccCCCCeEEEEECCCCCEEEEEeC-----CCeE
Q 003279 553 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPSLSRLATSSA-----DRTV 618 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs--~Dg~I~IWd~~t~~~~~~l-------~~h~~~I~~l~fspdg~~Latgs~-----Dg~I 618 (834)
..+..++++++|+++++.. .++.++||.+.+++.. .+ ..|-..+.+++|+++++++++-.. +..|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6789999999999988864 2343555555455433 22 234567999999999876665443 5789
Q ss_pred EEEecCCCCceeeeecc------CCCCeEEEEEccCCCcEEEEEe---CCCcEEEEECCCCceeeEeecCCCe--eEEEE
Q 003279 619 RVWDTENPDYSLRTFTG------HSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNGSCAGVFKCQSGA--TQMRF 687 (834)
Q Consensus 619 ~IWDl~s~~~~i~~~~~------h~~~V~sl~fspdg~~llasgs---~Dg~I~lwDl~s~~~i~~~~~~~~i--~~l~~ 687 (834)
.+||+.+++. +..+.. +...+..+++++++..++++.. .++.|.+||+.+++....+..+... ....+
T Consensus 96 ~~~d~~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 96 VAWDTLNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEETTTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEECCCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 9999987653 333321 2345789999987666666665 6789999999988876655321111 01344
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CC-eEEEEEcCC---CCC--ceeEE-
Q 003279 688 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGS---GSK--GECIH- 759 (834)
Q Consensus 688 sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg-~I~IwDl~s---~~~--~~~i~- 759 (834)
.+++..+.+...++.+..|. ..+..|+|+|+++.|+++. ++ .|..++... +.. .....
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK 240 (343)
T ss_dssp EETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred eECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc
Confidence 45665566666666665442 2467899999999888877 44 666665421 100 00000
Q ss_pred -EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEecc--CCCCeEEEEEeCCCCEEEEEecCCc
Q 003279 760 -ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDKC 829 (834)
Q Consensus 760 -~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~--h~~~V~~lafspdg~~LaSgs~DG~ 829 (834)
....+......++++++|..+++...++.|.+||..+++...+.. +...+.+++|.+++.++++.+..+.
T Consensus 241 ~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~ 313 (343)
T 2qe8_A 241 IERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHH 313 (343)
T ss_dssp CEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGG
T ss_pred eEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccc
Confidence 111223355678999999877777778899999996666544332 2456899999999988888765443
No 214
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.40 E-value=4.1e-10 Score=122.47 Aligned_cols=220 Identities=15% Similarity=0.095 Sum_probs=154.0
Q ss_pred eEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeee
Q 003279 555 VESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 633 (834)
Q Consensus 555 V~sl~fSpdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~ 633 (834)
..+++|+|++. ++++...++.|.+||..+++... +. ....|.+++|+++++++++. .+ .|.+||..++... .+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~--~~ 124 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLT--LH 124 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEE--EE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEE--EE
Confidence 56789999754 55666678899999998876543 32 34679999999999877754 44 4999999876532 22
Q ss_pred cc-----CCCCeEEEEEccCCCcEEEEEeC------CCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc-CC
Q 003279 634 TG-----HSTTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN 701 (834)
Q Consensus 634 ~~-----h~~~V~sl~fspdg~~llasgs~------Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg 701 (834)
.. ....+.+++++|+|. ++++... .+.|..++ +++.............++|+|+++.++++.. ++
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred eeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence 21 124688999999987 4434332 24566666 4554443333345778999999988776654 68
Q ss_pred eEEEEECC--CC-e-----EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEE
Q 003279 702 YISILDVE--TQ-V-----CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 772 (834)
Q Consensus 702 ~I~iwDl~--t~-~-----~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sva 772 (834)
.|.+||+. ++ . ....+......+.+++++++|.++++.. ++.|.+||. ++ +.+..+......+.+++
T Consensus 202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g---~~~~~i~~~~~~~~~~a 277 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG---NHIARYEVPGKQTTCPA 277 (326)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC---CEEEEEECSCSBEEEEE
T ss_pred EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CC---CEEEEEECCCCCcEEEE
Confidence 99999986 55 2 2333333445678999999999877776 688999998 34 45556666666799999
Q ss_pred Ee-CCCCEEEEEEcCC
Q 003279 773 FH-PTFPSLLVIGCYE 787 (834)
Q Consensus 773 fs-pdg~~L~sgs~dg 787 (834)
|+ +++..|++++..+
T Consensus 278 f~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 278 FIGPDASRLLVTSARE 293 (326)
T ss_dssp EESTTSCEEEEEEBCT
T ss_pred EecCCCCEEEEEecCC
Confidence 98 8888887766543
No 215
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.39 E-value=4.6e-11 Score=134.62 Aligned_cols=237 Identities=13% Similarity=0.170 Sum_probs=170.3
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeccC-------CCCeEEEEECCCCCEEEEEeC--CCe
Q 003279 557 SCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLSRLATSSA--DRT 617 (834)
Q Consensus 557 sl~fSpdg~~Lasgs----------~Dg~I~IWd~~t~~~~~~l~~h-------~~~I~~l~fspdg~~Latgs~--Dg~ 617 (834)
.+.++|||++|+++. .++.|.++|..+++.+..+.-. ......++|+||+++|+++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 799999999888876 3678999999999998877532 234568899999999999875 578
Q ss_pred EEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeE----eecCC-C-eeEEEEecCC
Q 003279 618 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKCQS-G-ATQMRFQPRL 691 (834)
Q Consensus 618 I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~----~~~~~-~-i~~l~~sp~g 691 (834)
|.++|+.+.+. +..+.-.. +....|++...+++.+.||.+.+.++.+++.... +.... . ...+.|.+++
T Consensus 202 VsVID~~t~kv-v~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg 276 (426)
T 3c75_H 202 VGVVDLEGKTF-DRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS 276 (426)
T ss_dssp EEEEETTTTEE-EEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT
T ss_pred EEEEECCCCeE-EEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC
Confidence 99999998664 44443211 1344566666777777899999899866665532 22111 1 1245678999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEE--EEeC----------CCCCEEEEEEcCCCCEEEEEe-----------CCeEEEEE
Q 003279 692 GRILAAAIENYISILDVETQVCRL--KLQG----------HKNQVHSVCWNTSGEYLASVS-----------DELVRVWS 748 (834)
Q Consensus 692 ~~ll~~s~dg~I~iwDl~t~~~~~--~l~~----------h~~~I~sl~~spdg~~Lasgs-----------Dg~I~IwD 748 (834)
..++.....+.|.++|+....... .+.- .......+++++++..+++.. ++.|.++|
T Consensus 277 ~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID 356 (426)
T 3c75_H 277 GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLN 356 (426)
T ss_dssp CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred CEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEE
Confidence 998888888999999997654321 1110 011112368999988777654 24799999
Q ss_pred cCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCeEEEe
Q 003279 749 IGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENKTLTL 802 (834)
Q Consensus 749 l~s~~~~~~i~~~~~~~~~I~svafspdg~-~L~sgs-~dg~I~Iwdl~~~~~~~l 802 (834)
+.+. +.+..+... .....++|+|+++ .+++.. .++.|.++|+.+++++..
T Consensus 357 ~~T~---kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 357 AETG---ERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRS 408 (426)
T ss_dssp TTTC---CEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred CCCC---eEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence 9998 556555432 3578899999999 888888 488999999999998844
No 216
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.38 E-value=7.2e-11 Score=126.87 Aligned_cols=236 Identities=6% Similarity=-0.005 Sum_probs=160.6
Q ss_pred EEEEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEE
Q 003279 586 VKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 664 (834)
Q Consensus 586 ~~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~l 664 (834)
.+..+..........+|+++++ ++++...++.|..|+.. +. ...+..+...+..+++++++. ++++...++.|.+
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~--~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~ 111 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT--VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITR 111 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC--EEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEE
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC--EEEEeCCCCccceeeECCCCC-EEEEECCCCEEEE
Confidence 3344445566788999999998 56666778999999984 33 345555667899999999987 5545445678999
Q ss_pred EECCCCceeeEeec-----CCCeeEEEEecCCCEEEE----EEc-------------CCeEEEEECCCCeEEEEEeCCCC
Q 003279 665 WSINNGSCAGVFKC-----QSGATQMRFQPRLGRILA----AAI-------------ENYISILDVETQVCRLKLQGHKN 722 (834)
Q Consensus 665 wDl~s~~~i~~~~~-----~~~i~~l~~sp~g~~ll~----~s~-------------dg~I~iwDl~t~~~~~~l~~h~~ 722 (834)
|+.. ++....... ...+..++++++|..+++ +.. .+.|+.||..+++..... ...
T Consensus 112 ~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~ 188 (305)
T 3dr2_A 112 SDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD 188 (305)
T ss_dssp ECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES
T ss_pred ECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC
Confidence 9986 554332221 134678999999887765 221 257888888766544332 334
Q ss_pred CEEEEEEcCCCCEEEEEe-C------CeEEEEEcCCCCCceeEEEe-ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 723 QVHSVCWNTSGEYLASVS-D------ELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 723 ~I~sl~~spdg~~Lasgs-D------g~I~IwDl~s~~~~~~i~~~-~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
....++|+||++.|+++. . +.|++|++.... ......+ .........++++++|+ |++++. +.|.+|+.
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~-~gv~~~~~ 265 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGW-LWSSSG-TGVCVFDS 265 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSC-EEECCS-SEEEEECT
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCC-EEEecC-CcEEEECC
Confidence 678899999999777766 4 689999987642 1111111 11234456789999998 555554 45999998
Q ss_pred CCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 795 TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 795 ~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
.......+..+. .+.+++|+++++.|+.++.++..++
T Consensus 266 ~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 266 DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 544433444443 6899999999998888888776554
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.37 E-value=7.4e-10 Score=120.40 Aligned_cols=221 Identities=9% Similarity=0.014 Sum_probs=150.4
Q ss_pred CeEEEEECCCC-CEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceee
Q 003279 596 WITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 674 (834)
Q Consensus 596 ~I~~l~fspdg-~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~ 674 (834)
...+++|++++ .++++...++.|.+||..++.. ..+. ....+.+++|++++. +++++ . ..|.+||..+++...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~~-~~~~v~~i~~~~dg~-l~v~~-~-~gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK--TVHA-LPFMGSALAKISDSK-QLIAS-D-DGLFLRDTATGVLTL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE--EEEE-CSSCEEEEEEEETTE-EEEEE-T-TEEEEEETTTCCEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE--EEEE-CCCcceEEEEeCCCe-EEEEE-C-CCEEEEECCCCcEEE
Confidence 35678899974 4556666788999999987543 2232 346799999999976 44343 3 459999998887654
Q ss_pred EeecC-----CCeeEEEEecCCCEEEEEEc------CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--C
Q 003279 675 VFKCQ-----SGATQMRFQPRLGRILAAAI------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D 741 (834)
Q Consensus 675 ~~~~~-----~~i~~l~~sp~g~~ll~~s~------dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--D 741 (834)
..... ..+..++++++++.+++... .+.|+.+| +++... +..+......++|+|+++.|+.+. +
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~ 200 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKV 200 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCC
Confidence 33321 24788999999886655432 25677777 454433 222334578999999998776655 6
Q ss_pred CeEEEEEcC--CC-CC--ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEe
Q 003279 742 ELVRVWSIG--SG-SK--GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS 815 (834)
Q Consensus 742 g~I~IwDl~--s~-~~--~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafs 815 (834)
+.|.+||+. ++ .. ...+..+......+..++++++|.++++...++.|.+||.. ++.+ .+..+...+++++|+
T Consensus 201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTTCPAFI 279 (326)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEEEEEEE
T ss_pred CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEEEECCCCCcEEEEEe
Confidence 799999986 44 21 12233333334567889999999866666567899999984 5444 555566679999999
Q ss_pred -CCCCEEEEEec
Q 003279 816 -TVNGMVASASH 826 (834)
Q Consensus 816 -pdg~~LaSgs~ 826 (834)
++++.|+.++.
T Consensus 280 g~d~~~L~vt~~ 291 (326)
T 2ghs_A 280 GPDASRLLVTSA 291 (326)
T ss_dssp STTSCEEEEEEB
T ss_pred cCCCCEEEEEec
Confidence 88876655443
No 218
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.37 E-value=1e-10 Score=125.60 Aligned_cols=233 Identities=11% Similarity=0.117 Sum_probs=161.3
Q ss_pred EecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC
Q 003279 547 LIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 625 (834)
Q Consensus 547 ~l~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s 625 (834)
.+..+........|+++|+ +++++..++.|..|+. +++ ...+..+...+..++++++++++++...++.|.+|+.+
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~- 115 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD- 115 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence 3344555678899999998 5667777899999997 444 34555567789999999999977666666889999986
Q ss_pred CCceeeeeccC-----CCCeEEEEEccCCCcEEEE----EeC-------------CCcEEEEECCCCceeeEeecCCCee
Q 003279 626 PDYSLRTFTGH-----STTVMSLDFHPSKEDLLCS----CDN-------------NSEIRYWSINNGSCAGVFKCQSGAT 683 (834)
Q Consensus 626 ~~~~i~~~~~h-----~~~V~sl~fspdg~~llas----gs~-------------Dg~I~lwDl~s~~~i~~~~~~~~i~ 683 (834)
+.. ..+..+ ...+.+++++++|. ++++ +.. .+.|+.||..+++..... ......
T Consensus 116 g~~--~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~ 191 (305)
T 3dr2_A 116 GQA--HLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPN 191 (305)
T ss_dssp SCE--EEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEE
T ss_pred CCE--EEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCc
Confidence 332 222111 23567899999987 5544 221 256888888777655544 445677
Q ss_pred EEEEecCCCEEEEEEcC------CeEEEEECCCCeE--EEEE-eCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCC
Q 003279 684 QMRFQPRLGRILAAAIE------NYISILDVETQVC--RLKL-QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK 754 (834)
Q Consensus 684 ~l~~sp~g~~ll~~s~d------g~I~iwDl~t~~~--~~~l-~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~ 754 (834)
.++|+|+++.|+++... +.|.+||+..+.. ...+ ......+..++++++|++.++. .+.|.+|+.. +
T Consensus 192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~-g-- 267 (305)
T 3dr2_A 192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTGVCVFDSD-G-- 267 (305)
T ss_dssp EEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SSEEEEECTT-S--
T ss_pred ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CCcEEEECCC-C--
Confidence 89999999988888775 7899999876531 1111 1123445678999999965554 4459999974 3
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003279 755 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 793 (834)
Q Consensus 755 ~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwd 793 (834)
+.+..+.... .+.+++|.++++.|++++.++ |+.++
T Consensus 268 -~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 268 -QLLGHIPTPG-TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp -CEEEEEECSS-CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred -CEEEEEECCC-ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 4455555444 588899999999888888764 44444
No 219
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.33 E-value=1.7e-11 Score=136.39 Aligned_cols=172 Identities=14% Similarity=0.122 Sum_probs=138.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-----------EEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~-----------~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
.++.+++++...+|++|+.+ .++||++++.+ ....+ .+.. |+.++| |+.+|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 58999999999999999987 56669865433 11222 3566 999999 89999999 889999999
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCe
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 702 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~ 702 (834)
+.+... ......|...|.++.+.+.. +++++.||.|.+||+.++.... ....|.|++|+|+| ++++..||.
T Consensus 113 v~sl~~-~~~~~~~~~~v~~i~~~~p~---~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~ 183 (388)
T 1xip_A 113 LEELSE-FRTVTSFEKPVFQLKNVNNT---LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRS 183 (388)
T ss_dssp SSSTTC-EEEEEECSSCEEEEEECSSE---EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSC
T ss_pred chhhhc-cCccceeecceeeEEecCCC---EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCc
Confidence 987553 44556677888888877542 6678889999999999887654 34689999999998 788999999
Q ss_pred EEEEECCCCeE--EEEE------e---CCCCCEEEEEEcCCCCEEEEEe
Q 003279 703 ISILDVETQVC--RLKL------Q---GHKNQVHSVCWNTSGEYLASVS 740 (834)
Q Consensus 703 I~iwDl~t~~~--~~~l------~---~h~~~I~sl~~spdg~~Lasgs 740 (834)
|++|+...+.. ..++ . +|...|.+|+|.+++.++++-.
T Consensus 184 i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 184 FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 99999988875 5566 3 3778999999999999998754
No 220
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.33 E-value=1.8e-11 Score=135.68 Aligned_cols=254 Identities=11% Similarity=0.051 Sum_probs=173.0
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeccC-------CCCeEEEEECCCCC
Q 003279 545 FQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLS 607 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~~Lasgs----------~Dg~I~IWd~~t~~~~~~l~~h-------~~~I~~l~fspdg~ 607 (834)
+..+..-..+ .+.|+|||++|+++. .++.|.+||..+++.+.++..+ ......++|+|||+
T Consensus 59 ~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk 136 (368)
T 1mda_H 59 LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA 136 (368)
T ss_dssp EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS
T ss_pred EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCC
Confidence 3444433345 799999999998886 3688999999999999988643 12456899999999
Q ss_pred EEEEEeC--CCeEEE--EecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-----Cceee----
Q 003279 608 RLATSSA--DRTVRV--WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-----GSCAG---- 674 (834)
Q Consensus 608 ~Latgs~--Dg~I~I--WDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s-----~~~i~---- 674 (834)
+|+++.. +..|.+ +|+.+ +..+... + |+.+.|++...+++.+.|+.+.+.|+.+ ++...
T Consensus 137 ~lyVan~~~~~~v~V~~iD~~t----v~~i~v~-~---~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~ 208 (368)
T 1mda_H 137 CLLFFLFGSSAAAGLSVPGASD----DQLTKSA-S---CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTG 208 (368)
T ss_dssp CEEEEECSSSCEEEEEETTTEE----EEEEECS-S---CCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCT
T ss_pred EEEEEccCCCCeEEEEEEchhh----ceEEECC-C---ceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeee
Confidence 9999875 457888 88876 2333211 1 1234566777777777899999999986 44331
Q ss_pred EeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC--eEEEEEeCC----------CCCEEEEEEcCCCCEEEEEe--
Q 003279 675 VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ--VCRLKLQGH----------KNQVHSVCWNTSGEYLASVS-- 740 (834)
Q Consensus 675 ~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~--~~~~~l~~h----------~~~I~sl~~spdg~~Lasgs-- 740 (834)
.+....... . .++++.++..+. +.|.+.|+... +.+..+.-. ......++|+++++.++++.
T Consensus 209 ~i~vg~~P~--~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~ 284 (368)
T 1mda_H 209 AQNCSSQAA--Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE 284 (368)
T ss_dssp TSCBCSCCE--E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred eeeCCCCcc--c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEecc
Confidence 121211122 3 777788777777 99999999754 222222110 01112268999998877643
Q ss_pred C--------CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE-E-cCCeEEEEECCCCeEEEeccCCCCeE
Q 003279 741 D--------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI-G-CYETLELWNMTENKTLTLSAHDKLVS 810 (834)
Q Consensus 741 D--------g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sg-s-~dg~I~Iwdl~~~~~~~l~~h~~~V~ 810 (834)
. +.+.++|+.+. +.+..+.... ....++|+||++.++++ . .++.|.++|+.+++.+....-.....
T Consensus 285 ~~~~~~~~~~~~~ViD~~t~---~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~ 360 (368)
T 1mda_H 285 HSRSCLAAAENTSSVTASVG---QTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPE 360 (368)
T ss_dssp CSSCTTSCEEEEEEEESSSC---CEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCC
T ss_pred ccCcccccCCCEEEEECCCC---eEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCC
Confidence 2 35779999998 4555554332 58899999999855544 4 48999999999999996655556666
Q ss_pred EEEEeC
Q 003279 811 SLAAST 816 (834)
Q Consensus 811 ~lafsp 816 (834)
.+++.+
T Consensus 361 ~i~~~~ 366 (368)
T 1mda_H 361 SLSVQN 366 (368)
T ss_dssp EEECCC
T ss_pred EEEeec
Confidence 777654
No 221
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.31 E-value=5e-09 Score=115.58 Aligned_cols=255 Identities=13% Similarity=0.081 Sum_probs=165.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCe--
Q 003279 563 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-- 640 (834)
Q Consensus 563 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V-- 640 (834)
++..|++++.++.|..+|.++++.+................ +..+++++.++.|..+|..+++.... +.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~-~~~~~~~~~~ 178 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWT-VNLDMPSLSL 178 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEE-EECCC-----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEE-EeCCCCceee
Confidence 45578888899999999999999887765443322222222 45788888999999999988775332 22211110
Q ss_pred ---EEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCee-----E---EEEec--CCCEEEEEEcCCeEEEEE
Q 003279 641 ---MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-----Q---MRFQP--RLGRILAAAIENYISILD 707 (834)
Q Consensus 641 ---~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~-----~---l~~sp--~g~~ll~~s~dg~I~iwD 707 (834)
...... + . .++.+..++.|..+|..+++.+..+....... . +...| .++.+++++.++.|..+|
T Consensus 179 ~~~~~~~~~-~-~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d 255 (376)
T 3q7m_A 179 RGESAPTTA-F-G-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALD 255 (376)
T ss_dssp CCCCCCEEE-T-T-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEE
T ss_pred cCCCCcEEE-C-C-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEE
Confidence 122222 2 3 45577789999999999999888776432100 0 00111 257788888899999999
Q ss_pred CCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEc
Q 003279 708 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGC 785 (834)
Q Consensus 708 l~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-~~~~I~svafspdg~~L~sgs~ 785 (834)
.++++.+..... ....++... +..|++++ ++.|..+|..++ +.+..... ....+....+. +..|++++.
T Consensus 256 ~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~ 326 (376)
T 3q7m_A 256 LRSGQIMWKREL--GSVNDFIVD--GNRIYLVDQNDRVMALTIDGG---VTLWTQSDLLHRLLTSPVLY--NGNLVVGDS 326 (376)
T ss_dssp TTTCCEEEEECC--CCEEEEEEE--TTEEEEEETTCCEEEEETTTC---CEEEEECTTTTSCCCCCEEE--TTEEEEECT
T ss_pred CCCCcEEeeccC--CCCCCceEE--CCEEEEEcCCCeEEEEECCCC---cEEEeecccCCCcccCCEEE--CCEEEEEeC
Confidence 999988877652 334455443 44555555 889999999988 44444431 12222233332 467899999
Q ss_pred CCeEEEEECCCCeEEE-eccCCCCeEE-EEEeCCCCEEEEEecCCcEEEeC
Q 003279 786 YETLELWNMTENKTLT-LSAHDKLVSS-LAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 786 dg~I~Iwdl~~~~~~~-l~~h~~~V~~-lafspdg~~LaSgs~DG~I~IWd 834 (834)
++.|+++|..+++.+. .......+.. .... +..|+.++.||.|+.||
T Consensus 327 ~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~--~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 327 EGYLHWINVEDGRFVAQQKVDSSGFQTEPVAA--DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECCTTCBCSCCEEE--TTEEEEEBTTSCEEEEE
T ss_pred CCeEEEEECCCCcEEEEEecCCCcceeCCEEE--CCEEEEEeCCCEEEEEe
Confidence 9999999999999873 3332333322 2222 55788889999999885
No 222
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.26 E-value=3e-10 Score=122.13 Aligned_cols=258 Identities=10% Similarity=0.007 Sum_probs=171.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeee
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 633 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~ 633 (834)
.+.++.+.++|. |.+++.+ |..||. +++.+..+......+....+. +..|+.++.++.|..+|.. +.. ...+
T Consensus 61 ~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~-~~~~ 132 (330)
T 3hxj_A 61 IECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTE-KWRF 132 (330)
T ss_dssp EEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCE-EEEE
T ss_pred cccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCE-EEEE
Confidence 356777777775 4455544 888885 555443333222223333333 5567888889999999988 553 3344
Q ss_pred ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003279 634 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQV 712 (834)
Q Consensus 634 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~-~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~ 712 (834)
..+...+.++...+++. ++.++.++.|..||.. ++....+... ..+.++.+.+++. +++++ +.|..|| .+++
T Consensus 133 ~~~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~ 205 (330)
T 3hxj_A 133 KTKKAIYATPIVSEDGT--IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGT 205 (330)
T ss_dssp ECSSCCCSCCEECTTSC--EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSC
T ss_pred cCCCceeeeeEEcCCCE--EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCc
Confidence 44455566777776665 4457778999999999 8777666643 3456666766665 44444 8999999 7777
Q ss_pred EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003279 713 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 792 (834)
Q Consensus 713 ~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iw 792 (834)
....+......+.++..+++|.+++++.++.|..+|. ++ ..+..+......+..+.+.+++ .|++++.++.|..+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g---~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~ 280 (330)
T 3hxj_A 206 EKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DG---TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAI 280 (330)
T ss_dssp EEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TS---CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEE
T ss_pred EEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CC---CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEE
Confidence 7777766666788899998888777666888888874 33 3444444444444455666566 47888888899999
Q ss_pred ECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 793 NMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 793 dl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
|. +++.+ ........+.++...+++. |..++.+|.+++.
T Consensus 281 d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 281 NP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYAL 320 (330)
T ss_dssp CT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEE
T ss_pred CC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEE
Confidence 96 55554 4444456677888877776 4557889988764
No 223
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.24 E-value=1e-13 Score=154.05 Aligned_cols=223 Identities=14% Similarity=0.055 Sum_probs=121.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCC-CeE
Q 003279 563 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVM 641 (834)
Q Consensus 563 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~-~V~ 641 (834)
++..|++++.|+.|+.||..+++.+..+.. +.+.+..+..++..+++++.|+.|+.||..+++. +..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~-~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG-LTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CC-SEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCce-eeeeeccCccccc
Confidence 577899999999999999999999988875 5566666667787888888999999999987664 222222211 110
Q ss_pred -EEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 003279 642 -SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH 720 (834)
Q Consensus 642 -sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h 720 (834)
+..+. .+. .+++++.|+.|+.||..+|+.+..+..... ..++|+++.+++++.++.|+.||.++++.+..+..+
T Consensus 85 ~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~ 159 (369)
T 2hz6_A 85 ASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF 159 (369)
T ss_dssp TCSCC-------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE
T ss_pred cCceEe-cCC-EEEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc
Confidence 01111 223 456777899999999999999887765432 345668889999999999999999998766554421
Q ss_pred CCCEEEEEEcCC----CCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE--EEcCCeEEEEEC
Q 003279 721 KNQVHSVCWNTS----GEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV--IGCYETLELWNM 794 (834)
Q Consensus 721 ~~~I~sl~~spd----g~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~s--gs~dg~I~Iwdl 794 (834)
. ....+++.+ +.+++++.|+.|+.||..++ +.+..+......+...++++++...+. ...++.++.+|.
T Consensus 160 ~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG---~~~W~~~~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~ 234 (369)
T 2hz6_A 160 D--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG---DVLWIQNYASPVVAFYVWQREGLRKVMHINVAVETLRYLTF 234 (369)
T ss_dssp E--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC---CEEEEEECSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHH
T ss_pred c--ccCccccCCccccceEEEECCCCEEEEEECCCC---cEEEEecCCCceEEEEEecCCceEeccceeecccceeeeeh
Confidence 1 122333333 44444444999999999988 455555433333333455556642210 111335566666
Q ss_pred CCCe
Q 003279 795 TENK 798 (834)
Q Consensus 795 ~~~~ 798 (834)
.+++
T Consensus 235 ~tG~ 238 (369)
T 2hz6_A 235 MSGE 238 (369)
T ss_dssp HHHH
T ss_pred hcCC
Confidence 5554
No 224
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.24 E-value=1.6e-09 Score=129.87 Aligned_cols=263 Identities=12% Similarity=0.091 Sum_probs=180.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCC-----------eEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeee
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----------ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~-----------I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~ 632 (834)
+..|++++.++.|+.+|..+++.+..+...... ...+++ ++..|++++.|+.|..+|..+++.....
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 457777888899999999999999877543211 112333 4568888999999999999998764333
Q ss_pred eccC-C----CCeEE-EEEccCCCcEEEEEe-----CCCcEEEEECCCCceeeEeecCCCe-------------------
Q 003279 633 FTGH-S----TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSGA------------------- 682 (834)
Q Consensus 633 ~~~h-~----~~V~s-l~fspdg~~llasgs-----~Dg~I~lwDl~s~~~i~~~~~~~~i------------------- 682 (834)
..+ . ..+.+ ..+. +..+++.++ .++.|+.||..+|+.+..+......
T Consensus 155 -~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 155 -NTFEGQKGSLTITGAPRVF--KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp -ETTTTCCSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred -cCCcCcCcCcccccCcEEE--CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence 322 1 11211 1111 233443332 2689999999999999887652211
Q ss_pred --------------eEEEEecCCCEEEEEEcCC-------------------eEEEEECCCCeEEEEEeC--CC------
Q 003279 683 --------------TQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK------ 721 (834)
Q Consensus 683 --------------~~l~~sp~g~~ll~~s~dg-------------------~I~iwDl~t~~~~~~l~~--h~------ 721 (834)
..+.++++++.++++..++ .|..+|.++++.+..+.. |.
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~ 311 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS 311 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence 3578899999998887664 599999999999888764 21
Q ss_pred -CCEEEEEEcCCC---CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC-----------Cce-----------------
Q 003279 722 -NQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCTG-----------NKF----------------- 768 (834)
Q Consensus 722 -~~I~sl~~spdg---~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~-----------~~I----------------- 768 (834)
.....+....+| ..|+.++ +|.|+++|..+++ .+..+.... ..+
T Consensus 312 ~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~ 388 (677)
T 1kb0_A 312 TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK---FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG 388 (677)
T ss_dssp CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC---EeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence 112223333467 5677777 9999999999984 443332110 111
Q ss_pred -------EEEEEeCCCCEEEEEEcC-------------------------------------------CeEEEEECCCCe
Q 003279 769 -------HSCVFHPTFPSLLVIGCY-------------------------------------------ETLELWNMTENK 798 (834)
Q Consensus 769 -------~svafspdg~~L~sgs~d-------------------------------------------g~I~Iwdl~~~~ 798 (834)
..++|+|+...+++...+ +.|..||+.+++
T Consensus 389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~ 468 (677)
T 1kb0_A 389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK 468 (677)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence 156889998888876532 689999999999
Q ss_pred EEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 799 TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 799 ~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.+-...+...+....+..++.++++++.||.|++||
T Consensus 469 ~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 469 AAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred EEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence 884444555566666777888999999999999986
No 225
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.24 E-value=1.6e-10 Score=127.97 Aligned_cols=246 Identities=11% Similarity=0.006 Sum_probs=165.1
Q ss_pred cEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEe----------CCCeEEEEecCCCCceeeeeccC-------C
Q 003279 575 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTENPDYSLRTFTGH-------S 637 (834)
Q Consensus 575 ~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs----------~Dg~I~IWDl~s~~~~i~~~~~h-------~ 637 (834)
+|.++|..+++.+.++.....+ .+.|+||+++++++. .++.|.+||+.+.+. +..+..+ .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v-v~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-IADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-EEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE-EEEEECCCccccccC
Confidence 8889999999999999766666 799999999998886 368999999998775 5554322 1
Q ss_pred CCeEEEEEccCCCcEEEEEeC-CCcEEE--EECCCCceeeEeecCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCC---
Q 003279 638 TTVMSLDFHPSKEDLLCSCDN-NSEIRY--WSINNGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVET--- 710 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasgs~-Dg~I~l--wDl~s~~~i~~~~~~~~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t--- 710 (834)
.....++|+|||++++++... +..|.+ +|+.+ +..+..... +.+.|++ ..+++.+.|+.+.+.|+++
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~ 197 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence 346689999999987766543 467888 99877 455544322 2233443 3455566788888899987
Q ss_pred --CeEEEE----EeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecC-------C---CceEEEEEe
Q 003279 711 --QVCRLK----LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCT-------G---NKFHSCVFH 774 (834)
Q Consensus 711 --~~~~~~----l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~-------~---~~I~svafs 774 (834)
++.... +.-...+. .+..++.++++.. +.|.+.|+.+... ..+..+... . .....++|+
T Consensus 198 ~~~~v~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~-~v~~~~~~~~~~~~~~~~~p~g~~~v~~s 272 (368)
T 1mda_H 198 AAGIVGAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGA-TMKAAIDGNESGRKADNFRSAGFQMVAKL 272 (368)
T ss_dssp CCEECCCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCC-EEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred cCCeEEEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcc-eEEEEEEeccccccccccccCcceeeEEc
Confidence 432211 11112333 3333444455555 8999999875321 222222110 0 111226899
Q ss_pred CCCCEEEEEEc---------CCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCC-EEEEEe-cCCcEEEeC
Q 003279 775 PTFPSLLVIGC---------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK 834 (834)
Q Consensus 775 pdg~~L~sgs~---------dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~-~LaSgs-~DG~I~IWd 834 (834)
++++.++++.. ++.+.++|+.+++.+....-.....+|+|+||++ ++++.. .++.|.++|
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence 99999888654 2356799999999885443344799999999998 566666 589999986
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.24 E-value=8e-10 Score=132.73 Aligned_cols=266 Identities=11% Similarity=0.096 Sum_probs=175.9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCC----------e-EEEEECCCCCEEEEEeCCCeEEEEecCCCCceeee
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----------I-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~----------I-~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~ 632 (834)
+..|++++.++.|+.+|..+|+.+-.+..+... + ..+.+ ++..|++++.|+.|+.+|..+++.....
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 557778888899999999999999887543221 1 11222 3568888999999999999998864433
Q ss_pred ecc-CCCCeEEEEEcc--CCCcEEEEEe-----CCCcEEEEECCCCceeeEeecCC------------------------
Q 003279 633 FTG-HSTTVMSLDFHP--SKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQS------------------------ 680 (834)
Q Consensus 633 ~~~-h~~~V~sl~fsp--dg~~llasgs-----~Dg~I~lwDl~s~~~i~~~~~~~------------------------ 680 (834)
... +......+..+| .+..+++.++ .++.|+.||.++|+.+..+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w 227 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY 227 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence 322 111111111111 1233443332 36899999999999988776310
Q ss_pred --------CeeEEEEecCCCEEEEEEcCC-------------------eEEEEECCCCeEEEEEeC--CC-------CCE
Q 003279 681 --------GATQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK-------NQV 724 (834)
Q Consensus 681 --------~i~~l~~sp~g~~ll~~s~dg-------------------~I~iwDl~t~~~~~~l~~--h~-------~~I 724 (834)
....+.++++.+.++++..++ .|..||.++++.+..+.. |. ..+
T Consensus 228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~ 307 (689)
T 1yiq_A 228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHM 307 (689)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCc
Confidence 012578899889999888775 399999999999988764 22 122
Q ss_pred EEEEEcCCCC---EEEEEe-CCeEEEEEcCCCCCceeEEEeecCC-----------------------------------
Q 003279 725 HSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG----------------------------------- 765 (834)
Q Consensus 725 ~sl~~spdg~---~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~----------------------------------- 765 (834)
.......+|+ +|+.++ +|.++++|..+++ .+.......
T Consensus 308 ~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~ 384 (689)
T 1yiq_A 308 ILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE---LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPA 384 (689)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSC
T ss_pred EEEeeccCCcEEEEEEEECCCCeEEEEECCCCC---EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCC
Confidence 2222233565 677777 9999999999984 332111100
Q ss_pred ----CceEEEEEeCCCCEEEEEEc---------------------------------------------CCeEEEEECCC
Q 003279 766 ----NKFHSCVFHPTFPSLLVIGC---------------------------------------------YETLELWNMTE 796 (834)
Q Consensus 766 ----~~I~svafspdg~~L~sgs~---------------------------------------------dg~I~Iwdl~~ 796 (834)
.....++|+|+...+++... ++.|+.||+.+
T Consensus 385 ~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t 464 (689)
T 1yiq_A 385 FWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK 464 (689)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT
T ss_pred cccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC
Confidence 01123688998887777632 36799999999
Q ss_pred CeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 797 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 797 ~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++.+-...+...+....+...+.+|++++.||.|+.||
T Consensus 465 G~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D 502 (689)
T 1yiq_A 465 QQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYA 502 (689)
T ss_dssp TEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEE
Confidence 99883333334444446667788999999999999986
No 227
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.23 E-value=5e-10 Score=134.70 Aligned_cols=236 Identities=13% Similarity=0.105 Sum_probs=158.6
Q ss_pred cCCCCeEEEEECCCCCEEEEEe-----CCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC-------
Q 003279 592 EHTQWITDVRFSPSLSRLATSS-----ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------- 659 (834)
Q Consensus 592 ~h~~~I~~l~fspdg~~Latgs-----~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D------- 659 (834)
+|...+..++|+|||++||.+. ....|++||+.+++.....+.. .....++|+ |++.++++...+
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCccccccc
Confidence 4556788999999999988543 2357999999987742222221 123577899 988777665432
Q ss_pred -----CcEEEEECCCCce--eeEeecC----CCeeEEEEecCCCEEEEEEcC----CeEEEEECCCCe-EEEEEeCCCCC
Q 003279 660 -----SEIRYWSINNGSC--AGVFKCQ----SGATQMRFQPRLGRILAAAIE----NYISILDVETQV-CRLKLQGHKNQ 723 (834)
Q Consensus 660 -----g~I~lwDl~s~~~--i~~~~~~----~~i~~l~~sp~g~~ll~~s~d----g~I~iwDl~t~~-~~~~l~~h~~~ 723 (834)
..|++|++.++.. ...+... .....+.|+|++++|++.... +.|+++|+.++. ....+..+...
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~ 282 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA 282 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence 3499999987653 2233322 236789999999998776542 489999998763 34455556666
Q ss_pred EEEEEEcCCCCEEEEEe--C---CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECC
Q 003279 724 VHSVCWNTSGEYLASVS--D---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMT 795 (834)
Q Consensus 724 I~sl~~spdg~~Lasgs--D---g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg---~I~Iwdl~ 795 (834)
.... |+++|..|+..+ + +.|.++|+.++... ....+..+...+. .|++++.+|++...++ .|++||+.
T Consensus 283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-HWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-GCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-ccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 6555 666666555544 3 47999999876431 1234444555554 8999999888776655 79999998
Q ss_pred CCeEEEec-cCCCCeEEEEEeCCCCEEEEEecC----CcEEEeC
Q 003279 796 ENKTLTLS-AHDKLVSSLAASTVNGMVASASHD----KCVKIWK 834 (834)
Q Consensus 796 ~~~~~~l~-~h~~~V~~lafspdg~~LaSgs~D----G~I~IWd 834 (834)
++....+. ...+.+..+.+++++..|+....+ +.|+.||
T Consensus 359 g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 359 GKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp SCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred CCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence 77655443 345667888888888866655444 6777765
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.21 E-value=3.4e-09 Score=127.22 Aligned_cols=256 Identities=11% Similarity=0.064 Sum_probs=167.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccC--CCCeEEEEECC---CCCEEEEEe------CCCeEEEEecCCCCceeee
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSP---SLSRLATSS------ADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h--~~~I~~l~fsp---dg~~Latgs------~Dg~I~IWDl~s~~~~i~~ 632 (834)
+..|++++.|+.|+.+|.++|+.+..+... ......+..+| ++ .+++++ .++.|+.||..+++.....
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 558888999999999999999998776532 11111111122 44 444443 3789999999998864333
Q ss_pred eccC------------------------------CCCeEEEEEccCCCcEEEEEeCCC-------------------cEE
Q 003279 633 FTGH------------------------------STTVMSLDFHPSKEDLLCSCDNNS-------------------EIR 663 (834)
Q Consensus 633 ~~~h------------------------------~~~V~sl~fspdg~~llasgs~Dg-------------------~I~ 663 (834)
.... ......++++|+.. +++.+..++ .|.
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~ 278 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV 278 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 2110 01112577888765 555666565 399
Q ss_pred EEECCCCceeeEeecCC----------CeeEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEEEEeCCC-CCE-----
Q 003279 664 YWSINNGSCAGVFKCQS----------GATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK-NQV----- 724 (834)
Q Consensus 664 lwDl~s~~~i~~~~~~~----------~i~~l~~sp~g~---~ll~~s~dg~I~iwDl~t~~~~~~l~~h~-~~I----- 724 (834)
.||.++|+.+..+.... ......+..++. .+++++.+|.|+++|.++++.+....... ...
T Consensus 279 AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~ 358 (689)
T 1yiq_A 279 AVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDM 358 (689)
T ss_dssp EEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEET
T ss_pred EEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCc
Confidence 99999999998887421 122222233454 67888889999999999998875443211 011
Q ss_pred ---------------------------------EEEEEcCCCCEEEEEe-------------------------------
Q 003279 725 ---------------------------------HSVCWNTSGEYLASVS------------------------------- 740 (834)
Q Consensus 725 ---------------------------------~sl~~spdg~~Lasgs------------------------------- 740 (834)
..++|+|+..++++..
T Consensus 359 ~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 438 (689)
T 1yiq_A 359 KTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGM 438 (689)
T ss_dssp TTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECC
T ss_pred cCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccc
Confidence 1268888887777652
Q ss_pred ---------------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-Eecc
Q 003279 741 ---------------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA 804 (834)
Q Consensus 741 ---------------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~ 804 (834)
++.|+.||+.++ +.+..+..+. .+....+...+..+++++.|+.|+.||.++++++ .+..
T Consensus 439 ~p~~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 439 MPEGAEGLLEMAKSWSGKLIAWDPVKQ---QAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp CCSSHHHHHHHHTTCEEEEEEEETTTT---EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cCcccccCCCCCCCcceeEEEEECCCC---CeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 267999999998 5555554433 2333466667888999999999999999999998 4433
Q ss_pred C-CCCeEEEEEeCCCC-EEEEEe
Q 003279 805 H-DKLVSSLAASTVNG-MVASAS 825 (834)
Q Consensus 805 h-~~~V~~lafspdg~-~LaSgs 825 (834)
. .....-+.|..+|+ |+++.+
T Consensus 515 ~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 515 ASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp SSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCcccCceEEEECCEEEEEEEe
Confidence 2 22234467778887 444443
No 229
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.21 E-value=6e-09 Score=114.93 Aligned_cols=254 Identities=8% Similarity=0.050 Sum_probs=164.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccC---------CCCeE-EEEECCCCCEEEEEeCCCeEEEEecCCCCceeeee
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEH---------TQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 633 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h---------~~~I~-~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~ 633 (834)
+..|++++.++.|..||.++++.+..+... ...+. .+.. ++..+++++.++.|..+|..+++... .+
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W-~~ 129 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAW-QT 129 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEE-EE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEE-EE
Confidence 567888888999999999999988666442 12232 2222 45678888899999999999877533 22
Q ss_pred ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCe------eEEEEecCCCEEEEEEcCCeEEEEE
Q 003279 634 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA------TQMRFQPRLGRILAAAIENYISILD 707 (834)
Q Consensus 634 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i------~~l~~sp~g~~ll~~s~dg~I~iwD 707 (834)
............. + . .++.++.++.|..+|..+++.+..+.....+ ....+. ++.+++++.++.|..+|
T Consensus 130 ~~~~~~~~~p~~~-~-~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d 204 (376)
T 3q7m_A 130 KVAGEALSRPVVS-D-G-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVL 204 (376)
T ss_dssp ECSSCCCSCCEEE-T-T-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEE
T ss_pred eCCCceEcCCEEE-C-C-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEE
Confidence 2222211122222 2 3 5557778999999999999998887764433 122222 46788888899999999
Q ss_pred CCCCeEEEEEeCCCCC----EE---EEEEcC--CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003279 708 VETQVCRLKLQGHKNQ----VH---SVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 777 (834)
Q Consensus 708 l~t~~~~~~l~~h~~~----I~---sl~~sp--dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg 777 (834)
.++++.+......... +. .+...| .+..+++++ ++.|..+|..++ +.+..... .....+.. ++
T Consensus 205 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG---~~~w~~~~--~~~~~~~~--~~ 277 (376)
T 3q7m_A 205 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG---QIMWKREL--GSVNDFIV--DG 277 (376)
T ss_dssp TTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC---CEEEEECC--CCEEEEEE--ET
T ss_pred CCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC---cEEeeccC--CCCCCceE--EC
Confidence 9999888776532110 00 011111 234555566 889999999988 44444332 23444444 35
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEE-ec-cCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 778 PSLLVIGCYETLELWNMTENKTLT-LS-AHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 778 ~~L~sgs~dg~I~Iwdl~~~~~~~-l~-~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
..|++++.++.|..+|..+++.+- .. .....+..+... +..|+.++.+|.|++||
T Consensus 278 ~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d 334 (376)
T 3q7m_A 278 NRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWIN 334 (376)
T ss_dssp TEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEE
Confidence 678899999999999999998873 22 122233333333 56788888888888775
No 230
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.21 E-value=2.6e-09 Score=128.01 Aligned_cols=254 Identities=10% Similarity=0.042 Sum_probs=170.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEeccC-C----CCeEE-EEECCCCCEEEEEeC------CCeEEEEecCCCCcee
Q 003279 563 DGKLLATGGHDKKAVLWCTESFTVKSTLEEH-T----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSL 630 (834)
Q Consensus 563 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h-~----~~I~~-l~fspdg~~Latgs~------Dg~I~IWDl~s~~~~i 630 (834)
++..|++++.|+.|+.+|..+++.+..+..+ . ..+.+ ... .+..+++++. ++.|+.||..+++...
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 3568888999999999999999999887654 1 11211 111 2345555543 7999999999887643
Q ss_pred eeeccCC-------------------------------CCeEEEEEccCCCcEEEEEeCCC-------------------
Q 003279 631 RTFTGHS-------------------------------TTVMSLDFHPSKEDLLCSCDNNS------------------- 660 (834)
Q Consensus 631 ~~~~~h~-------------------------------~~V~sl~fspdg~~llasgs~Dg------------------- 660 (834)
+...... .....+++++++.. ++.+..++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~-vy~~~~~~~~w~~~~~~~~~gd~~~~~ 283 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNT-MYVGTGNGSPWSHKVRSPKGGDNLYLA 283 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTE-EEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCE-EEEECCCCccccCCCCCccCCCCeeeE
Confidence 3322111 11135778888664 44554443
Q ss_pred cEEEEECCCCceeeEeecCC----------CeeEEEEecCC---CEEEEEEcCCeEEEEECCCCeEEEEEeCCCC-----
Q 003279 661 EIRYWSINNGSCAGVFKCQS----------GATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKLQGHKN----- 722 (834)
Q Consensus 661 ~I~lwDl~s~~~i~~~~~~~----------~i~~l~~sp~g---~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~----- 722 (834)
.|..+|.++++.+..+.... ....+....+| ..+++++.+|.|+++|.++++.+..+.....
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~ 363 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence 59999999999998877421 12333344466 5788888999999999999998877653211
Q ss_pred ------CE------------------------EEEEEcCCCCEEEEEe-C------------------------------
Q 003279 723 ------QV------------------------HSVCWNTSGEYLASVS-D------------------------------ 741 (834)
Q Consensus 723 ------~I------------------------~sl~~spdg~~Lasgs-D------------------------------ 741 (834)
++ ..++|+|++.++++.. +
T Consensus 364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g 443 (677)
T 1kb0_A 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA 443 (677)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence 11 1468899888877653 2
Q ss_pred -------------CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-Eec-cCC
Q 003279 742 -------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-AHD 806 (834)
Q Consensus 742 -------------g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~-~h~ 806 (834)
+.|..||+.++ +.+..+.. ...+....+...+..+++++.++.|++||..+++++ .+. .+.
T Consensus 444 ~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~ 519 (677)
T 1kb0_A 444 KFFNAEPPKSKPFGRLLAWDPVAQ---KAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG 519 (677)
T ss_dssp EEECSSCCCSCCEEEEEEEETTTT---EEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred cccccccCCCCCccEEEEEeCCCC---cEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCC
Confidence 67999999988 55555443 333445567778888999999999999999999988 333 333
Q ss_pred CCeEEEEEeCCCCEEEE
Q 003279 807 KLVSSLAASTVNGMVAS 823 (834)
Q Consensus 807 ~~V~~lafspdg~~LaS 823 (834)
....-+.|..+|+.+++
T Consensus 520 ~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 520 VVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp CCSCCEEEEETTEEEEE
T ss_pred cccCCEEEEeCCEEEEE
Confidence 33345667788874443
No 231
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.20 E-value=2.8e-08 Score=104.27 Aligned_cols=247 Identities=9% Similarity=-0.004 Sum_probs=161.2
Q ss_pred CEEEEEeCCCcEEEEeCCCCeE-----EEEeccCCCCeEEEEECCCCCEEEEE-eCCCeEEEEecCCCCceeeeeccCCC
Q 003279 565 KLLATGGHDKKAVLWCTESFTV-----KSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHST 638 (834)
Q Consensus 565 ~~Lasgs~Dg~I~IWd~~t~~~-----~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~s~~~~i~~~~~h~~ 638 (834)
.+|+.+.. +.|+.++++.... ...+......+.+++|++++..|+.+ ..++.|.++++..... ...+.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEEECCCC
Confidence 45555553 4788888775432 11222223457899999976655554 4578999999986442 222322235
Q ss_pred CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC-CCeeEEEEecCCCEEEEEEcC---CeEEEEECCCCeEE
Q 003279 639 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIE---NYISILDVETQVCR 714 (834)
Q Consensus 639 ~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~-~~i~~l~~sp~g~~ll~~s~d---g~I~iwDl~t~~~~ 714 (834)
....+++++++..++++....+.|.++++............ .....++++|+++.|+++... +.|..+++......
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~ 159 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR 159 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE
Confidence 68899999987778777777889999999754332223222 467899999987887777753 68988988643322
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEE
Q 003279 715 LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLEL 791 (834)
Q Consensus 715 ~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~-dg~I~I 791 (834)
............+++++++..|+.+. .+.|.++|+... .....+. .......+++. +..|+++.. .+.|.+
T Consensus 160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~---~~~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~ 233 (267)
T 1npe_A 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIA 233 (267)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC---ceEEEec-CCCCceEEEEe--CCEEEEEECCCCeEEE
Confidence 22223335678999999887776666 679999998754 2222222 23344566654 556776665 469999
Q ss_pred EECCCCeEEEec-cCC-CCeEEEEEeCCCC
Q 003279 792 WNMTENKTLTLS-AHD-KLVSSLAASTVNG 819 (834)
Q Consensus 792 wdl~~~~~~~l~-~h~-~~V~~lafspdg~ 819 (834)
+|..+++.+... ... .....+++.|++.
T Consensus 234 ~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 234 MDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EeCCCCCceEEEccccccccceeeecCccC
Confidence 999999877433 222 2478888888764
No 232
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.18 E-value=4.2e-10 Score=125.16 Aligned_cols=169 Identities=11% Similarity=0.056 Sum_probs=130.4
Q ss_pred CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc-----------eeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003279 639 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-----------CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD 707 (834)
Q Consensus 639 ~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~-----------~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwD 707 (834)
.+..+++++... ++++|+.+ .+++|++.... ......... |+.++| ++..|+++ .++.|++||
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 689999999866 66677766 56669865432 223445556 999999 88888888 889999999
Q ss_pred CCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003279 708 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 786 (834)
Q Consensus 708 l~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d 786 (834)
+.+.........|...+.++.+.+.. ++++. ||.|.+||+..+. ... +...|.+++|+|+| ++++..|
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~---~~~----~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKS---TKQ----LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCC---EEE----EEESEEEEEECSSE--EEEEETT
T ss_pred chhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCc---ccc----ccCCceEEEEcCCc--eEEEEcC
Confidence 98776555666677889888877653 55555 9999999999773 222 34579999999999 7889999
Q ss_pred CeEEEEECCCCeE--E-Ee------c---cCCCCeEEEEEeCCCCEEEEE
Q 003279 787 ETLELWNMTENKT--L-TL------S---AHDKLVSSLAASTVNGMVASA 824 (834)
Q Consensus 787 g~I~Iwdl~~~~~--~-~l------~---~h~~~V~~lafspdg~~LaSg 824 (834)
|.|++|+...++. . .+ . +|...|.+|.|.+++.++++=
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 9999999988774 2 33 2 378899999999999888763
No 233
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.18 E-value=2.3e-08 Score=111.77 Aligned_cols=223 Identities=12% Similarity=0.074 Sum_probs=156.4
Q ss_pred EEc--CCCCEEEE-EeCCCcEEEEeCCCC----eEEEEec------c-CCCCeEEEEECCCCCEEEEEeCC------CeE
Q 003279 559 HFS--PDGKLLAT-GGHDKKAVLWCTESF----TVKSTLE------E-HTQWITDVRFSPSLSRLATSSAD------RTV 618 (834)
Q Consensus 559 ~fS--pdg~~Las-gs~Dg~I~IWd~~t~----~~~~~l~------~-h~~~I~~l~fspdg~~Latgs~D------g~I 618 (834)
.++ .++++|++ +..++.|+|+|+.+. +.+.+++ . ....-..+...|++ +++++..+ +.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 346 78887766 456789999999765 6667773 1 11245667888999 77776655 789
Q ss_pred EEEecCCCCceeeeeccC---CCCeEEEEEccCCCcEEEEEe-------------------CCCcEEEEECCCCceeeEe
Q 003279 619 RVWDTENPDYSLRTFTGH---STTVMSLDFHPSKEDLLCSCD-------------------NNSEIRYWSINNGSCAGVF 676 (834)
Q Consensus 619 ~IWDl~s~~~~i~~~~~h---~~~V~sl~fspdg~~llasgs-------------------~Dg~I~lwDl~s~~~i~~~ 676 (834)
.++|..+.+. +..+... ...-+.+.|+|+++.++ +.. .+..|.+||+.+++.+.++
T Consensus 167 ~vlD~~T~~v-~~~~~~~~~~~~~~Yd~~~~p~~~~mv-sS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI 244 (462)
T 2ece_A 167 LMLDHYSFEP-LGKWEIDRGDQYLAYDFWWNLPNEVLV-SSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL 244 (462)
T ss_dssp EEECTTTCCE-EEECCSBCTTCCCCCCEEEETTTTEEE-ECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE
T ss_pred EEEECCCCeE-EEEEccCCCCccccceEEECCCCCEEE-EccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE
Confidence 9999998664 4444422 12345688899988444 553 3689999999999888888
Q ss_pred ecC---CCeeEEEE--ecCCCEEEEEEc------CCeEEEEECCCCeE--EEE--EeCC----------------CCCEE
Q 003279 677 KCQ---SGATQMRF--QPRLGRILAAAI------ENYISILDVETQVC--RLK--LQGH----------------KNQVH 725 (834)
Q Consensus 677 ~~~---~~i~~l~~--sp~g~~ll~~s~------dg~I~iwDl~t~~~--~~~--l~~h----------------~~~I~ 725 (834)
... .....+.| +|+++++++++. ++.|.+|..+.+.. ... +... ...+.
T Consensus 245 ~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 245 TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 874 23455656 999999888885 46887766554421 111 1110 23467
Q ss_pred EEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCC--------------ceEEEEEeCCCCEEEEEE
Q 003279 726 SVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGN--------------KFHSCVFHPTFPSLLVIG 784 (834)
Q Consensus 726 sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~--------------~I~svafspdg~~L~sgs 784 (834)
.|.+++||++|+++. .+.|.+||+......+.+..+...+. ....+.++|||++|+++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 899999999999988 77999999975544466666554321 357899999999999998
No 234
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.10 E-value=7.2e-10 Score=119.15 Aligned_cols=256 Identities=10% Similarity=0.052 Sum_probs=168.5
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCC
Q 003279 558 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS 637 (834)
Q Consensus 558 l~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~ 637 (834)
+.+..++ .|.+++.++.|..|| .+++.+..+..+...+.++...+++. |+.++.+ |..||. +++. +..+....
T Consensus 25 ~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~-~~~~~~~~ 97 (330)
T 3hxj_A 25 PILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTE-KWRFDTKK 97 (330)
T ss_dssp CEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGG-GGGSCC--
T ss_pred ceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcE-EEEEECCC
Confidence 4454555 456677888999999 88888766655555667788877765 4445444 888886 3332 22222222
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCC-eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003279 638 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 716 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~-i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~ 716 (834)
.......+. + . .++.++.++.|..+|.. ++....+..... +.++...+++. +++++.++.|..||.. ++.+..
T Consensus 98 ~~~~~~~~~-~-~-~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~ 171 (330)
T 3hxj_A 98 AIVSDFTIF-E-D-ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWR 171 (330)
T ss_dssp ---CCEEEE-T-T-EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEE
T ss_pred CcccCceEE-C-C-EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEE
Confidence 222333333 3 3 45567778999999998 777766664333 45566665654 7778888999999999 877777
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 717 LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 717 l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
+......+.++.+.+++.+++++ +.|..|| .++ ..+..+......+.++.+.+++. |++++.++.|..+|...
T Consensus 172 ~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g---~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g 244 (330)
T 3hxj_A 172 FKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDG---TEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG 244 (330)
T ss_dssp EECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTS---CEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS
T ss_pred EecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCC---cEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCC
Confidence 76666677788888888866655 8899999 555 44445555556677888888875 77778888899998544
Q ss_pred CeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 797 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 797 ~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.....+......+.++.+.+++ .|..++.+|.|..+|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 245 TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAIN 281 (330)
T ss_dssp CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEEC
T ss_pred CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEEC
Confidence 4433444444445556666555 455667777777765
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.08 E-value=3.3e-09 Score=122.38 Aligned_cols=257 Identities=9% Similarity=0.014 Sum_probs=177.9
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEecc---------------------------------CC------CCeEEEEECC---
Q 003279 567 LATGGHDKKAVLWCTESFTVKSTLEE---------------------------------HT------QWITDVRFSP--- 604 (834)
Q Consensus 567 Lasgs~Dg~I~IWd~~t~~~~~~l~~---------------------------------h~------~~I~~l~fsp--- 604 (834)
+.+|+..|.|+|+-+.+++.+..+.. +. +.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 56788889999998888887766521 11 1122344444
Q ss_pred --CCCEEEEEeC-CCeEEEEecCCCCceeeeec-cCCCCeEEEEE-c-cCCCcEEEEE-----------------eCCCc
Q 003279 605 --SLSRLATSSA-DRTVRVWDTENPDYSLRTFT-GHSTTVMSLDF-H-PSKEDLLCSC-----------------DNNSE 661 (834)
Q Consensus 605 --dg~~Latgs~-Dg~I~IWDl~s~~~~i~~~~-~h~~~V~sl~f-s-pdg~~llasg-----------------s~Dg~ 661 (834)
||++|+.+.. +..|.+.|+.+.+. ...+. .....+..+++ + |+++++++++ ..++.
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~-~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKC-DAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEE-EEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceE-eeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 7788777665 55799999998653 33222 22345788887 4 8988877664 33568
Q ss_pred EEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCC--------------------------------------eE
Q 003279 662 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN--------------------------------------YI 703 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg--------------------------------------~I 703 (834)
+.++|..+.+.+..+........++++|+++++++++.+. .|
T Consensus 177 vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 9999999999999998766778899999999999998543 37
Q ss_pred EEEECCC--CeE-EEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC--------ceeEEEeecCCCceEE
Q 003279 704 SILDVET--QVC-RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK--------GECIHELSCTGNKFHS 770 (834)
Q Consensus 704 ~iwDl~t--~~~-~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~--------~~~i~~~~~~~~~I~s 770 (834)
.|.|.++ ++. +..+.. .....++.++|||+++++++ +++|.++|+.+... ...+.....-......
T Consensus 257 ~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h 335 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH 335 (595)
T ss_dssp EEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEE
T ss_pred EEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcce
Confidence 7777776 433 334432 23457899999999999988 78999999985410 0112222233556788
Q ss_pred EEEeCCCCEEEEEE-cCCeEEEEECCC----------CeEE-EeccCCCCe-----EEEEEeCCCCEEEEEec
Q 003279 771 CVFHPTFPSLLVIG-CYETLELWNMTE----------NKTL-TLSAHDKLV-----SSLAASTVNGMVASASH 826 (834)
Q Consensus 771 vafspdg~~L~sgs-~dg~I~Iwdl~~----------~~~~-~l~~h~~~V-----~~lafspdg~~LaSgs~ 826 (834)
++|+++| ++++.. -++.|.+||+.+ ...+ ++..|..+- .++.++|||++|++++.
T Consensus 336 ~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 336 TAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred EEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 9999999 665554 477999999976 4444 444443321 22355799999998863
No 236
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.07 E-value=5.6e-08 Score=108.73 Aligned_cols=222 Identities=9% Similarity=-0.030 Sum_probs=149.4
Q ss_pred EEC--CCCCEEEE-EeCCCeEEEEecCCCC---ceeeeec------c-CCCCeEEEEEccCCCcEEEEEeCC------Cc
Q 003279 601 RFS--PSLSRLAT-SSADRTVRVWDTENPD---YSLRTFT------G-HSTTVMSLDFHPSKEDLLCSCDNN------SE 661 (834)
Q Consensus 601 ~fs--pdg~~Lat-gs~Dg~I~IWDl~s~~---~~i~~~~------~-h~~~V~sl~fspdg~~llasgs~D------g~ 661 (834)
.++ .++++|+. +..+++|+|+|+.+.. ...+++. . .......+...|++ +++++..+ +.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCe
Confidence 346 77777665 4567899999997431 1223331 1 11234567788998 55566555 78
Q ss_pred EEEEECCCCceeeEeecCC----CeeEEEEecCCCEEEEEE-------------------cCCeEEEEECCCCeEEEEEe
Q 003279 662 IRYWSINNGSCAGVFKCQS----GATQMRFQPRLGRILAAA-------------------IENYISILDVETQVCRLKLQ 718 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~~~~----~i~~l~~sp~g~~ll~~s-------------------~dg~I~iwDl~t~~~~~~l~ 718 (834)
|.++|.++.+.+..+.... -...+.|+|+++.+++.. .++.|.+||+.+++.+.++.
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~ 245 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT 245 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence 9999999999999887432 234588899999888875 36899999999998888776
Q ss_pred CCC--CCEEEEEE--cCCCCEEEEEeC-------CeEEEEEcCCCCCceeEEEe--ecC----------------CCceE
Q 003279 719 GHK--NQVHSVCW--NTSGEYLASVSD-------ELVRVWSIGSGSKGECIHEL--SCT----------------GNKFH 769 (834)
Q Consensus 719 ~h~--~~I~sl~~--spdg~~LasgsD-------g~I~IwDl~s~~~~~~i~~~--~~~----------------~~~I~ 769 (834)
... .....+.| +|++++++++.. ++|.+|....+. ......+ ... .....
T Consensus 246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-EEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-eeEEEEEeCCCccccccccccccccccCCCcee
Confidence 421 23445656 999998776543 477777665431 1222221 110 24567
Q ss_pred EEEEeCCCCEEEEEEc-CCeEEEEECCC---CeEEEeccCC---------------CCeEEEEEeCCCCEEEEEe
Q 003279 770 SCVFHPTFPSLLVIGC-YETLELWNMTE---NKTLTLSAHD---------------KLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 770 svafspdg~~L~sgs~-dg~I~Iwdl~~---~~~~~l~~h~---------------~~V~~lafspdg~~LaSgs 825 (834)
.+.+++||++|+++.. .+.|.+||+.. .+.+...... +....++++|||++|+++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 8999999999998877 45999999863 2333221111 1368899999999999887
No 237
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.07 E-value=3e-09 Score=116.37 Aligned_cols=220 Identities=9% Similarity=0.034 Sum_probs=150.5
Q ss_pred CCeEEEEECCCCCEEEEEeC--CCeEEEEecCCCCceeeee-------ccCCCCeEEEEEccCCCcEEEEEeC-----CC
Q 003279 595 QWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTF-------TGHSTTVMSLDFHPSKEDLLCSCDN-----NS 660 (834)
Q Consensus 595 ~~I~~l~fspdg~~Latgs~--Dg~I~IWDl~s~~~~i~~~-------~~h~~~V~sl~fspdg~~llasgs~-----Dg 660 (834)
..+..|+++++++++++... ++.++||.+.++. +..+ ..+-..+.++++++++. ++++-.. +.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~--~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG--LIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE--EEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC--eecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCcCCCC
Confidence 67899999999999888642 3435666665332 2222 23456899999999965 5444332 57
Q ss_pred cEEEEECCCCceeeEeecC-------CCeeEEEEecCCCEEEEEE----cCCeEEEEECCCCeEEEEEeCCCCCEE-EEE
Q 003279 661 EIRYWSINNGSCAGVFKCQ-------SGATQMRFQPRLGRILAAA----IENYISILDVETQVCRLKLQGHKNQVH-SVC 728 (834)
Q Consensus 661 ~I~lwDl~s~~~i~~~~~~-------~~i~~l~~sp~g~~ll~~s----~dg~I~iwDl~t~~~~~~l~~h~~~I~-sl~ 728 (834)
.|.+||+.+++.+..+... ..+..++++++++.++++. .++.|.+||+.+++....+.+|..... ...
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID 173 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence 8999999999877777642 2468899998766766655 468999999998887776655432111 133
Q ss_pred EcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECC---CCe-----
Q 003279 729 WNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMT---ENK----- 798 (834)
Q Consensus 729 ~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg-~I~Iwdl~---~~~----- 798 (834)
+..+|..+.+.. ++.++.|. ..+..++|+|+++.|+++...+ .|+.++.. .+.
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~-----------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~ 236 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPH-----------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAE 236 (343)
T ss_dssp CEETTEECBEECTTSCEECCC-----------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHH
T ss_pred eeECCEEEEeccCCCceecee-----------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhh
Confidence 445666666555 66665552 1356799999999999888776 66666532 111
Q ss_pred ---EEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 799 ---TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 799 ---~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.+...++......++++++|.++++...++.|.+||
T Consensus 237 ~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 237 LGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVIT 275 (343)
T ss_dssp HHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred hhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEE
Confidence 012223445677899999999999988889999986
No 238
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.03 E-value=8.7e-09 Score=118.95 Aligned_cols=234 Identities=12% Similarity=0.128 Sum_probs=168.2
Q ss_pred CCCEEEEEeC-CCcEEEEeCCCCeEEEEecc-CCCCeEEEEE-C-CCCCEEEEEe------------------CCCeEEE
Q 003279 563 DGKLLATGGH-DKKAVLWCTESFTVKSTLEE-HTQWITDVRF-S-PSLSRLATSS------------------ADRTVRV 620 (834)
Q Consensus 563 dg~~Lasgs~-Dg~I~IWd~~t~~~~~~l~~-h~~~I~~l~f-s-pdg~~Latgs------------------~Dg~I~I 620 (834)
||++|++... ++.|.+.|+++.++...+.- ....+..+++ . |+++++++++ .++.|.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 8888888765 45699999999998885542 2345889998 5 8999999885 2468999
Q ss_pred EecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC-------------------------------------CcEE
Q 003279 621 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-------------------------------------SEIR 663 (834)
Q Consensus 621 WDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D-------------------------------------g~I~ 663 (834)
+|.++.+.......+. ....++++|+|+.+++++... +.|.
T Consensus 180 ID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 9999765433333322 456678999988777766432 2488
Q ss_pred EEECCC--Cce-eeEeecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCe------------EEEEEeCCCCCEEEE
Q 003279 664 YWSINN--GSC-AGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQV------------CRLKLQGHKNQVHSV 727 (834)
Q Consensus 664 lwDl~s--~~~-i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~------------~~~~l~~h~~~I~sl 727 (834)
+.|..+ ++. +..+.......++.++|||+++++++. ++.|.++|+.+.+ .+..+. -......+
T Consensus 258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~ 336 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHT 336 (595)
T ss_dssp EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEE
T ss_pred EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceE
Confidence 888887 555 667777778899999999999888876 6899999999653 333433 34567899
Q ss_pred EEcCCCCEEEEEe--CCeEEEEEcCCC-------CCceeEEEeecCCCceE-----EEEEeCCCCEEEEEEcCC--eE--
Q 003279 728 CWNTSGEYLASVS--DELVRVWSIGSG-------SKGECIHELSCTGNKFH-----SCVFHPTFPSLLVIGCYE--TL-- 789 (834)
Q Consensus 728 ~~spdg~~Lasgs--Dg~I~IwDl~s~-------~~~~~i~~~~~~~~~I~-----svafspdg~~L~sgs~dg--~I-- 789 (834)
+|+++| ++++.. |+.|.+||+... +....+..+..+..+-. .+.++|||++|++...-. .+
T Consensus 337 aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~ 415 (595)
T 1fwx_A 337 AFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLN 415 (595)
T ss_dssp EECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCC
T ss_pred EECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccccc
Confidence 999999 666555 999999999761 11256667666654321 124589999999886532 34
Q ss_pred ---------EEEECCCCeEE
Q 003279 790 ---------ELWNMTENKTL 800 (834)
Q Consensus 790 ---------~Iwdl~~~~~~ 800 (834)
.++|+.+++..
T Consensus 416 ~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 416 VGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp CCSSCCEEEEEEECSSSSCE
T ss_pred CCCCCCCcceEEEcCCCcEE
Confidence 88999766543
No 239
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.03 E-value=4.2e-08 Score=117.35 Aligned_cols=264 Identities=12% Similarity=0.078 Sum_probs=171.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCC----------e-EEEEECCCCCEEEEEeCCCeEEEEecCCCCceeee
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----------I-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~----------I-~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~ 632 (834)
+..|++++.++.|+.+|..+++.+..+...... + ..+++ .+..|++++.|+.|..+|..+++.....
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 457777888899999999999999877543221 0 11222 3567888889999999999998864433
Q ss_pred eccCC---CCeEE-EEEccCCCcEEEEEe-----CCCcEEEEECCCCceeeEeecCC--C--------------------
Q 003279 633 FTGHS---TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQS--G-------------------- 681 (834)
Q Consensus 633 ~~~h~---~~V~s-l~fspdg~~llasgs-----~Dg~I~lwDl~s~~~i~~~~~~~--~-------------------- 681 (834)
..... ..+.+ ..+. + ..+++.++ .+|.|+.+|.++|+.+..+.... .
T Consensus 144 ~~~~~~~~~~~~~~P~v~-~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVV-K-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp ECSCTTSSCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCCCCCcceecCCCEEE-C-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 32211 11111 1111 2 33443332 25899999999999998876310 0
Q ss_pred ----------eeEEEEecCCCEEEEEEcCC-------------------eEEEEECCCCeEEEEEeC--CC-------CC
Q 003279 682 ----------ATQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK-------NQ 723 (834)
Q Consensus 682 ----------i~~l~~sp~g~~ll~~s~dg-------------------~I~iwDl~t~~~~~~l~~--h~-------~~ 723 (834)
...++++++.+.++++..++ .|..+|.++++.+..+.. |. .+
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 12468888888888887765 499999999999988764 22 23
Q ss_pred EEEEEEcCCCC---EEEEEe-CCeEEEEEcCCCCCceeEEEeecCC------------Cc--------------------
Q 003279 724 VHSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG------------NK-------------------- 767 (834)
Q Consensus 724 I~sl~~spdg~---~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~------------~~-------------------- 767 (834)
+....+..+|+ +|+.++ +|.++++|..+++ .+....... .+
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~ 378 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK---LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPF 378 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTT
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC---EeccccccccccccccccccCCccccccccccCCeeEECCCCc
Confidence 33333334665 566676 9999999999984 332111100 00
Q ss_pred ----eEEEEEeCCCCEEEEEE------------------------------------cCCeEEEEECCCCeEEEeccCCC
Q 003279 768 ----FHSCVFHPTFPSLLVIG------------------------------------CYETLELWNMTENKTLTLSAHDK 807 (834)
Q Consensus 768 ----I~svafspdg~~L~sgs------------------------------------~dg~I~Iwdl~~~~~~~l~~h~~ 807 (834)
...++++|+...+++.. .++.|+.||+.+++.+-...+..
T Consensus 379 G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~ 458 (668)
T 1kv9_A 379 GAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT 458 (668)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS
T ss_pred cccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC
Confidence 11267888877666522 23789999999999883333333
Q ss_pred CeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 808 LVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 808 ~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.+....+...+.+|++++.||.|++||
T Consensus 459 ~~~~~~~~t~gg~vf~g~~dg~l~a~d 485 (668)
T 1kv9_A 459 HWNGGTLSTAGNLVFQGTAAGQMHAYS 485 (668)
T ss_dssp SCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CCcCceeEeCCCEEEEECCcccchhhh
Confidence 444444556788899999999999986
No 240
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.01 E-value=3.4e-07 Score=95.89 Aligned_cols=222 Identities=7% Similarity=0.010 Sum_probs=143.6
Q ss_pred CEEEEEeCCCeEEEEecCCCCce----eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC-CC
Q 003279 607 SRLATSSADRTVRVWDTENPDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SG 681 (834)
Q Consensus 607 ~~Latgs~Dg~I~IWDl~s~~~~----i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~-~~ 681 (834)
.+|+.+.. +.|+.++++..... ...+......+.+++|++++..++++...++.|.++++........+... ..
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 34555543 47888988764321 11122223457899999987878877777889999999866544433322 46
Q ss_pred eeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C---CeEEEEEcCCCCCce
Q 003279 682 ATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D---ELVRVWSIGSGSKGE 756 (834)
Q Consensus 682 i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-D---g~I~IwDl~s~~~~~ 756 (834)
...++++++++.++++.. .+.|.++|+........+.........++++|++..|+.+. . +.|.++++..... .
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~ 159 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-R 159 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-E
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-E
Confidence 889999998777777765 57999999875433222332235678999999766655554 3 5888888864321 1
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEe-cCCcEEEeC
Q 003279 757 CIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 834 (834)
Q Consensus 757 ~i~~~~~~~~~I~svafspdg~~L~sgs~d-g~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs-~DG~I~IWd 834 (834)
.+ ..........+++++++..|+++... +.|.++|+.+.....+.........+++. +..|+.+. ..+.|.++|
T Consensus 160 ~~--~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d 235 (267)
T 1npe_A 160 IL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMD 235 (267)
T ss_dssp EE--ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred EE--EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEe
Confidence 11 11233467899999998888777654 59999999876554433333445677765 44444444 456776653
No 241
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.98 E-value=1.4e-07 Score=99.13 Aligned_cols=204 Identities=11% Similarity=0.022 Sum_probs=144.3
Q ss_pred eEEEEeccCCC--CeEEEEECCCCCEEEEEeC--CCeEEEEecCCCCceeeeec-cCCCCeEEEEEccCCCcEEEEEeCC
Q 003279 585 TVKSTLEEHTQ--WITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNN 659 (834)
Q Consensus 585 ~~~~~l~~h~~--~I~~l~fspdg~~Latgs~--Dg~I~IWDl~s~~~~i~~~~-~h~~~V~sl~fspdg~~llasgs~D 659 (834)
+.+.++. |.. ....+.|++++.++++.+. ++.|+++|+.+++. +..+. +.......+++. ++.++++.-.+
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v-~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKV-ENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCE-EEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCE-EEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 4555663 443 4689999998654444443 57999999999875 33332 222233455555 56677777788
Q ss_pred CcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC-----CCEEEEEEcCCCC
Q 003279 660 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGE 734 (834)
Q Consensus 660 g~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~-----~~I~sl~~spdg~ 734 (834)
+.+.++|..+.+.+..+... .-....++++++.++++..++.|.++|..+.+.+..+.-.. ..++.+.|. ++.
T Consensus 86 ~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~ 163 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE 163 (266)
T ss_dssp SEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred CEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE
Confidence 99999999999999998765 12234466788888888878999999999988877766321 246788888 675
Q ss_pred EEEEEe-CCeEEEEEcCCCCCceeEEEeecC-------------CCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCC
Q 003279 735 YLASVS-DELVRVWSIGSGSKGECIHELSCT-------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMTEN 797 (834)
Q Consensus 735 ~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-------------~~~I~svafspdg~~L~sgs~-dg~I~Iwdl~~~ 797 (834)
+++... ++.|.+.|..++ +.+..+... ....+.++|+|+++.+++++. .+.|++.++...
T Consensus 164 lyvn~~~~~~V~vID~~tg---~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 164 VWANIWQTDCIARISAKDG---TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTSSEEEEEETTTC---CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEecCCCCeEEEEECCCC---cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 555554 789999999998 455555432 135689999999987777664 568888887554
No 242
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.95 E-value=1.9e-06 Score=104.98 Aligned_cols=268 Identities=7% Similarity=0.015 Sum_probs=181.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc-------CCCCeEEEEECCCCCEEEEEeCCCeEEEEecC
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~-------h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 624 (834)
...|.++...++|.+.+ |+.+ -|.+||..++........ ....|.++...++|. |..|+.++-|.+|+..
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI 338 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred CCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence 35699999999887554 5555 689999888766543321 235799999998886 5556677779999876
Q ss_pred CCCceeeeec-----cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee---------cCCCeeEEEEecC
Q 003279 625 NPDYSLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------CQSGATQMRFQPR 690 (834)
Q Consensus 625 s~~~~i~~~~-----~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~---------~~~~i~~l~~sp~ 690 (834)
+......... -....|.++...+++. +..|+.++-|..||..++....... ....|.+++..++
T Consensus 339 ~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~--lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~ 416 (795)
T 4a2l_A 339 RNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN--LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEK 416 (795)
T ss_dssp GGSSEEECCCTTSSSCSCSSEEEEEECTTSC--EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETT
T ss_pred cccceEEcCCCCCCCCCCCeeEEEEECCCCC--EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCC
Confidence 5443211110 1245699999888765 3357777789999988776543321 1245888888888
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEe----CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEe-----
Q 003279 691 LGRILAAAIENYISILDVETQVCRLKLQ----GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL----- 761 (834)
Q Consensus 691 g~~ll~~s~dg~I~iwDl~t~~~~~~l~----~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~----- 761 (834)
+..|.+|+.++.|.+||..+++...... .....|.++..+++|.+.+++. +.|.+||..++ ......
T Consensus 417 g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~---~~~~~~~~~~~ 492 (795)
T 4a2l_A 417 KSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQR---SFTTIEKEKDG 492 (795)
T ss_dssp TTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTT---EEEECCBCTTC
T ss_pred CCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCC---eEEEccccccc
Confidence 7757788888889999998876443321 1345799999999998777665 55889998765 222111
Q ss_pred -ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEec-------cCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 762 -SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-------AHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 762 -~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~-------~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
......|.++...++|. |.+++. +.|.+||..+++. .+. .....|.++...++|.+.++.. +| |..|
T Consensus 493 ~~~~~~~i~~i~~d~~g~-lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l~~~ 567 (795)
T 4a2l_A 493 TPVVSKQITTLFRDSHKR-LWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-FYCF 567 (795)
T ss_dssp CBCCCCCEEEEEECTTCC-EEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-EEEE
T ss_pred cccCCceEEEEEECCCCC-EEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-ceeE
Confidence 11235788999998887 555555 5688999887766 332 2345789999999888666543 35 4444
No 243
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.95 E-value=4e-10 Score=125.02 Aligned_cols=201 Identities=9% Similarity=-0.002 Sum_probs=110.3
Q ss_pred CCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCC--e
Q 003279 605 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--A 682 (834)
Q Consensus 605 dg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~--i 682 (834)
++..|++++.|+.|+.||..+++. +..+.. +.+.+..+..++. ++++++.|+.|+.||..+++.+..+..... +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~-~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSI-KWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCE-EEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE-EEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 577899999999999999998875 333333 4455555555554 555777899999999999887766543211 1
Q ss_pred e-EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEE
Q 003279 683 T-QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 760 (834)
Q Consensus 683 ~-~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~ 760 (834)
. ...+ ..++.+++++.++.|+.||.++++.+..+..+. ...++|++..|++++ |+.|+.||.++++. +..
T Consensus 84 ~~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~---~W~ 155 (369)
T 2hz6_A 84 QASPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTREL---RWN 155 (369)
T ss_dssp TTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSC---CCE
T ss_pred ccCceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCE---EEe
Confidence 0 1111 134678888889999999999999888776543 234566777777777 89999999998853 222
Q ss_pred eecCCCceEEEEEeCCC---CEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEE-EEEeCCCC
Q 003279 761 LSCTGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSS-LAASTVNG 819 (834)
Q Consensus 761 ~~~~~~~I~svafspdg---~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~-lafspdg~ 819 (834)
+... .....++..+. ..+++++.++.|+.||..+++.+-......++.. ..+++++.
T Consensus 156 ~~~~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 156 ATYF--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL 216 (369)
T ss_dssp EEEE--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred Eecc--cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence 2111 11222334432 5688889999999999999998743334455543 34445553
No 244
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.94 E-value=1.9e-07 Score=109.52 Aligned_cols=262 Identities=10% Similarity=0.074 Sum_probs=166.7
Q ss_pred CCEEEEEeC-CCcEEEEeC-CCCeEEEEeccCCC-Ce----------EEEEECCCCCEEEEEeCCCeEEEEecCCCCcee
Q 003279 564 GKLLATGGH-DKKAVLWCT-ESFTVKSTLEEHTQ-WI----------TDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 630 (834)
Q Consensus 564 g~~Lasgs~-Dg~I~IWd~-~t~~~~~~l~~h~~-~I----------~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i 630 (834)
+..|++++. ++.|+-+|. .+++.+-.+..... .+ ..+++ ++..|++++.|+.|..+|..+++...
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 446666777 899999999 89999877643221 00 11223 35678888899999999999887644
Q ss_pred eeeccC-C--CCeEE-EEEccCCCcEEEEEeC------CCcEEEEECCCCceeeEeecCCCe------------------
Q 003279 631 RTFTGH-S--TTVMS-LDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQSGA------------------ 682 (834)
Q Consensus 631 ~~~~~h-~--~~V~s-l~fspdg~~llasgs~------Dg~I~lwDl~s~~~i~~~~~~~~i------------------ 682 (834)
..-... . ..+.+ .... + ..++ +++. ++.|+.+|.++++.+..+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~-~-g~v~-vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~ 216 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA-K-DTVL-MGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQ 216 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE-T-TEEE-EECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred EecCCCCCccceeccCCEEE-C-CEEE-EEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccc
Confidence 322211 0 01211 1111 2 3344 4443 789999999999999887653321
Q ss_pred ---------------------eEEEEecCCCEEEEEEcC----------------CeEEEEECCCCeEEEEEeCC--C--
Q 003279 683 ---------------------TQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQGH--K-- 721 (834)
Q Consensus 683 ---------------------~~l~~sp~g~~ll~~s~d----------------g~I~iwDl~t~~~~~~l~~h--~-- 721 (834)
..+++.++.+.++++..+ +.|..+|.++++.+..+... .
T Consensus 217 ~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~ 296 (571)
T 2ad6_A 217 FGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEW 296 (571)
T ss_dssp SSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSS
T ss_pred cccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccc
Confidence 235677777788777642 35999999999998887632 1
Q ss_pred ------CCEEEEEEcCCCC---EEEEEe-CCeEEEEEcCCCCCceeEEEeecCC-------------Cce----------
Q 003279 722 ------NQVHSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG-------------NKF---------- 768 (834)
Q Consensus 722 ------~~I~sl~~spdg~---~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~-------------~~I---------- 768 (834)
.++. +....+|+ +++.++ +|.++++|..+++ .+..+.... .++
T Consensus 297 d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~ 372 (571)
T 2ad6_A 297 DFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGN---LIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMD 372 (571)
T ss_dssp CCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCC---EEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTT
T ss_pred ccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCC---EEeeecccCCccccccccccCCceecccccCCCCC
Confidence 1221 22224674 566666 8899999999884 333332111 111
Q ss_pred ----------------EEEEEeCCCCEEEEEEc-------------------------------------CCeEEEEECC
Q 003279 769 ----------------HSCVFHPTFPSLLVIGC-------------------------------------YETLELWNMT 795 (834)
Q Consensus 769 ----------------~svafspdg~~L~sgs~-------------------------------------dg~I~Iwdl~ 795 (834)
..++++|+...|++... ++.|+.||+.
T Consensus 373 ~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~ 452 (571)
T 2ad6_A 373 HKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLT 452 (571)
T ss_dssp CCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTT
T ss_pred CCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECC
Confidence 24578888887777642 4689999999
Q ss_pred CCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 796 ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 796 ~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+++.+-...+...+....+...+.+++.++.||.|+.||
T Consensus 453 tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 453 TGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALD 491 (571)
T ss_dssp TCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred CCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEE
Confidence 998873333333333333344566777789999999886
No 245
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.93 E-value=2e-06 Score=104.76 Aligned_cols=266 Identities=8% Similarity=0.083 Sum_probs=179.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc-------CCCCeEEEEECCCCCEEEEEeCCCeEEEEecC
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~-------h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 624 (834)
...|.++...++|.+. .|+.++-|.+||..+++....... ....|.++...+++.+.+ |+.+ -|.+||..
T Consensus 214 ~~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIW-VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTEEE-EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETT
T ss_pred CCeeEEEEEcCCCCEE-EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCC
Confidence 4679999988888654 455555599999888765543322 235699999998887554 4455 58899987
Q ss_pred CCCceeeeec--------cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-------cCCCeeEEEEec
Q 003279 625 NPDYSLRTFT--------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------CQSGATQMRFQP 689 (834)
Q Consensus 625 s~~~~i~~~~--------~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-------~~~~i~~l~~sp 689 (834)
+... ..+. -....|.++...++|. +..|+.++-|.+|+..++....... ....|.++...+
T Consensus 291 ~~~~--~~~~~~~~~~~~l~~~~i~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~ 366 (795)
T 4a2l_A 291 TDSF--ASYSSNPVENGSLSQRSVRSIFMDSQGG--MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK 366 (795)
T ss_dssp TTEE--EEECCCTTSTTSCSSSCEEEEEECTTSC--EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT
T ss_pred CCeE--EEEecCCCCCCCCCCCcEEEEEEeCCcC--EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC
Confidence 6543 2221 1236799999988876 3457767789999876554322211 124588888887
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEEeC--------CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEE
Q 003279 690 RLGRILAAAIENYISILDVETQVCRLKLQG--------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 760 (834)
Q Consensus 690 ~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~--------h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~ 760 (834)
++. |.+|+.++.|..||..++........ ....|.+++.++++.+|.+|+ ++.|.+||..++. .. .
T Consensus 367 ~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~---~~-~ 441 (795)
T 4a2l_A 367 DKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ---VE-N 441 (795)
T ss_dssp TSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC---EE-E
T ss_pred CCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc---EE-E
Confidence 755 66788888899999987754432211 235799999999999444455 6789999988762 22 2
Q ss_pred ee-----cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEecc-------CCCCeEEEEEeCCCCEEEEEecCC
Q 003279 761 LS-----CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-------HDKLVSSLAASTVNGMVASASHDK 828 (834)
Q Consensus 761 ~~-----~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~-------h~~~V~~lafspdg~~LaSgs~DG 828 (834)
+. .....|.++...+++. |.+++. +.|.+||..+++...+.. ....|.++...++|.+.+... +|
T Consensus 442 ~~~~~~~l~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~G 518 (795)
T 4a2l_A 442 FNQRNSQLVNENVYAILPDGEGN-LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EG 518 (795)
T ss_dssp ECTTTSCCSCSCEEEEEECSSSC-EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SC
T ss_pred eecCCCCcCCCeeEEEEECCCCC-EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-Cc
Confidence 22 2345788999888887 555555 569999998887664432 236789999999888766554 44
Q ss_pred cEEEe
Q 003279 829 CVKIW 833 (834)
Q Consensus 829 ~I~IW 833 (834)
|.+|
T Consensus 519 -l~~~ 522 (795)
T 4a2l_A 519 -LSVF 522 (795)
T ss_dssp -EEEE
T ss_pred -eEEE
Confidence 5554
No 246
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.89 E-value=8.9e-07 Score=95.49 Aligned_cols=234 Identities=10% Similarity=0.030 Sum_probs=146.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-c------------------CCCCeEEEEECCCCCEEEEEeC
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-E------------------HTQWITDVRFSPSLSRLATSSA 614 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~------------------h~~~I~~l~fspdg~~Latgs~ 614 (834)
...+++|+++|++++++..++.|..||..+++...... . ....+..+++.++...|+++..
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 45678899999878888889999999987655432211 0 0135789999973334555555
Q ss_pred CCeEEEEecCCCCceeeeecc-----CCCCeEEEEEcc-CCCcEEEEEeC-----------------CCcEEEEECCCCc
Q 003279 615 DRTVRVWDTENPDYSLRTFTG-----HSTTVMSLDFHP-SKEDLLCSCDN-----------------NSEIRYWSINNGS 671 (834)
Q Consensus 615 Dg~I~IWDl~s~~~~i~~~~~-----h~~~V~sl~fsp-dg~~llasgs~-----------------Dg~I~lwDl~s~~ 671 (834)
.+.|.++|..++.. ..+.. .......+++.+ +|. ++++... ++.|..||..+++
T Consensus 100 ~~~i~~~d~~~g~~--~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 100 YYHLSVVGSEGGHA--TQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp TTEEEEECTTCEEC--EEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred CCCEEEEeCCCCEE--EEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 56688888765432 22211 123578899999 875 4444321 3679999988776
Q ss_pred eeeEeecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCC---eEEEEEeCCCCCEEEEEEcCCCCEEEEEeC------
Q 003279 672 CAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTSGEYLASVSD------ 741 (834)
Q Consensus 672 ~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~---~~~~~l~~h~~~I~sl~~spdg~~LasgsD------ 741 (834)
.............++++++++.++++.. .+.|.+||+... ... .+....+ ...++++++|.++++...
T Consensus 177 ~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~-~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~ 254 (322)
T 2fp8_A 177 TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAE-VLVKIPN-PGNIKRNADGHFWVSSSEELDGNM 254 (322)
T ss_dssp EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEE-EEEECSS-EEEEEECTTSCEEEEEEEETTSST
T ss_pred EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccc-eEEeCCC-CCCeEECCCCCEEEEecCcccccc
Confidence 5444333345678999999997777754 589999998742 211 1111223 788999999987776543
Q ss_pred -----CeEEEEEcCCCCCceeEEEeecCC----CceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCe
Q 003279 742 -----ELVRVWSIGSGSKGECIHELSCTG----NKFHSCVFHPTFPSLLVIG-CYETLELWNMTENK 798 (834)
Q Consensus 742 -----g~I~IwDl~s~~~~~~i~~~~~~~----~~I~svafspdg~~L~sgs-~dg~I~Iwdl~~~~ 798 (834)
+.|.++|.. + +.+..+.... ..+..+++. ++ .|++++ ..+.|.++++....
T Consensus 255 ~~~~~~~v~~~d~~-G---~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 255 HGRVDPKGIKFDEF-G---NILEVIPLPPPFAGEHFEQIQEH-DG-LLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp TSCEEEEEEEECTT-S---CEEEEEECCTTTTTSCCCEEEEE-TT-EEEEECSSCSEEEEEEC----
T ss_pred cCCCccEEEEECCC-C---CEEEEEECCCCCccccceEEEEe-CC-EEEEeecCCCceEEEeccccc
Confidence 467777753 3 3444444332 345666663 44 455544 56688888876543
No 247
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.87 E-value=1.8e-06 Score=92.57 Aligned_cols=233 Identities=9% Similarity=0.021 Sum_probs=145.6
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEe-CCC-c
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNS-E 661 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs-~Dg-~ 661 (834)
.+.+..+... .....++|+++++++++-..++.|..||..... ...+ .....+.++++.+++. ++++.. .++ .
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~~~-~~~~~p~gia~~~dG~-l~vad~~~~~~~ 96 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIHA-TVEGKVSGLAFTSNGD-LVATGWNADSIP 96 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEEE-ECSSEEEEEEECTTSC-EEEEEECTTSCE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--EEEE-eCCCCceeEEEcCCCc-EEEEeccCCcce
Confidence 4455555433 467899999999877777688999999987532 2222 2345688999999987 444443 222 4
Q ss_pred EEEEECCCCceeeEeecC--CCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeE-EEEEe---------CCCCCEEEEE
Q 003279 662 IRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAA-IENYISILDVETQVC-RLKLQ---------GHKNQVHSVC 728 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~~~--~~i~~l~~sp~g~~ll~~s-~dg~I~iwDl~t~~~-~~~l~---------~h~~~I~sl~ 728 (834)
|..+|..+++........ .....++..++ ..++++. .++.|+++|...+.. +.... ..-.....|
T Consensus 97 v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi- 174 (306)
T 2p4o_A 97 VVSLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL- 174 (306)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred EEEEcCCCCeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence 777888887765444321 22344554444 4555555 478999999886532 22111 111234556
Q ss_pred EcCCCCEEEEEe--CCeEEEEEcCC-CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE---e
Q 003279 729 WNTSGEYLASVS--DELVRVWSIGS-GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT---L 802 (834)
Q Consensus 729 ~spdg~~Lasgs--Dg~I~IwDl~s-~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~---l 802 (834)
++++.+|+++. .+.|.+|++.. +.. .....+.. ......++++++|.++++....+.|.+||.. ++... +
T Consensus 175 -s~dg~~lyv~d~~~~~I~~~~~~~~g~~-~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~ 250 (306)
T 2p4o_A 175 -KRFGNFLYVSNTEKMLLLRIPVDSTDKP-GEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQA 250 (306)
T ss_dssp -EEETTEEEEEETTTTEEEEEEBCTTSCB-CCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECG
T ss_pred -CcCCCEEEEEeCCCCEEEEEEeCCCCCC-CccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeec
Confidence 78888777766 77999999975 321 11111111 1345678999999865555556799999976 55432 2
Q ss_pred ccCCCCeEEEEEe---CCCCEEEEEecC
Q 003279 803 SAHDKLVSSLAAS---TVNGMVASASHD 827 (834)
Q Consensus 803 ~~h~~~V~~lafs---pdg~~LaSgs~D 827 (834)
......+++++|. ++++.|+.++..
T Consensus 251 ~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 251 EQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp GGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ccccCCceEEEEecccCCCCEEEEECCC
Confidence 2233668999998 888777666543
No 248
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.86 E-value=1.1e-06 Score=94.83 Aligned_cols=234 Identities=9% Similarity=0.001 Sum_probs=146.0
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeecc------------------CCCCeEEEEEccCCCcEEEEE
Q 003279 595 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG------------------HSTTVMSLDFHPSKEDLLCSC 656 (834)
Q Consensus 595 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~------------------h~~~V~sl~fspdg~~llasg 656 (834)
....+++|.+++.+++++..++.|..||..+.......... ....+.++++.+++..++ .+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~-v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY-IV 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE-EE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE-EE
Confidence 34578899999988888888999999998764432111100 113578899997334455 44
Q ss_pred eCCCcEEEEECCCCceeeEeec-----CCCeeEEEEec-CCCEEEEEEc-----------------CCeEEEEECCCCeE
Q 003279 657 DNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQP-RLGRILAAAI-----------------ENYISILDVETQVC 713 (834)
Q Consensus 657 s~Dg~I~lwDl~s~~~i~~~~~-----~~~i~~l~~sp-~g~~ll~~s~-----------------dg~I~iwDl~t~~~ 713 (834)
+..+.|..+|..++........ ......+++.+ ++..+++... ++.|..||..+++.
T Consensus 98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 4455588898876543222111 13467899999 8765555322 36799999887764
Q ss_pred EEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc------
Q 003279 714 RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC------ 785 (834)
Q Consensus 714 ~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~------ 785 (834)
...... ......|+|++++++|+++. .+.|.+|++....... ...+..... ...++++++|.++++...
T Consensus 178 ~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~ 254 (322)
T 2fp8_A 178 TLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNM 254 (322)
T ss_dssp EEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-EEEEEECSS-EEEEEECTTSCEEEEEEEETTSST
T ss_pred EEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-cceEEeCCC-CCCeEECCCCCEEEEecCcccccc
Confidence 433221 23346799999999776665 6799999987532111 111111223 788999999985555444
Q ss_pred ----CCeEEEEECCCCeEE-EeccC----CCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 786 ----YETLELWNMTENKTL-TLSAH----DKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 786 ----dg~I~Iwdl~~~~~~-~l~~h----~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.+.|..+|.. ++.+ .+... ...++++++ .++.++++....+.|.+++
T Consensus 255 ~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~ 310 (322)
T 2fp8_A 255 HGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILV 310 (322)
T ss_dssp TSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEE
T ss_pred cCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEe
Confidence 3578888875 4544 33322 245777776 4566666655677777653
No 249
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.86 E-value=4e-07 Score=107.07 Aligned_cols=264 Identities=9% Similarity=0.032 Sum_probs=166.1
Q ss_pred CCEEEEEeC-CCcEEEEeC-CCCeEEEEeccCCCC-----------eEEEEECCCCCE----EEEEeCCCeEEEEecCCC
Q 003279 564 GKLLATGGH-DKKAVLWCT-ESFTVKSTLEEHTQW-----------ITDVRFSPSLSR----LATSSADRTVRVWDTENP 626 (834)
Q Consensus 564 g~~Lasgs~-Dg~I~IWd~-~t~~~~~~l~~h~~~-----------I~~l~fspdg~~----Latgs~Dg~I~IWDl~s~ 626 (834)
+..|++++. ++.|+-+|. .+++.+-.+...... ...+++.|.+.. |++++.|+.|..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 446777777 889999999 899998776533211 123455433334 888889999999999998
Q ss_pred CceeeeeccC-C--CCeEE-EEEccCCCcEEEEEe------CCCcEEEEECCCCceeeEeecCCCe--------------
Q 003279 627 DYSLRTFTGH-S--TTVMS-LDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSGA-------------- 682 (834)
Q Consensus 627 ~~~i~~~~~h-~--~~V~s-l~fspdg~~llasgs------~Dg~I~lwDl~s~~~i~~~~~~~~i-------------- 682 (834)
+.....-... . ..+.+ ..+. + ..++ +++ .++.|+.+|.++|+.+..+......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~-g~V~-vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~ 218 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-K-DKVI-IGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-T-TEEE-ECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred CEEEeecCCCCCccceeecCCEEE-C-CEEE-EEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence 8644332211 0 01211 1111 2 3344 443 3799999999999999887754322
Q ss_pred -------------------------eEEEEecCCCEEEEEEcC----------------CeEEEEECCCCeEEEEEeCCC
Q 003279 683 -------------------------TQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQGHK 721 (834)
Q Consensus 683 -------------------------~~l~~sp~g~~ll~~s~d----------------g~I~iwDl~t~~~~~~l~~h~ 721 (834)
..+++.+..+.++++..+ +.|..+|.++++.+..+....
T Consensus 219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~ 298 (599)
T 1w6s_A 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP 298 (599)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCC
Confidence 135677788888888765 389999999999988876522
Q ss_pred C----------CEEEEEEc-CCC---CEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-------------CCc------
Q 003279 722 N----------QVHSVCWN-TSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCT-------------GNK------ 767 (834)
Q Consensus 722 ~----------~I~sl~~s-pdg---~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-------------~~~------ 767 (834)
. ++. +... .+| ..++.++ +|.++++|..+++ .+...... ..+
T Consensus 299 ~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~ 374 (599)
T 1w6s_A 299 HDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA---LVSANKLDDTVNVFKSVDLKTGQPVRDPEY 374 (599)
T ss_dssp TCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCC---EEEEEESSTTCCSEEEECTTTCCEEECGGG
T ss_pred CccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCC---EeecccccCCcccccccccCCCceeecccc
Confidence 1 122 2222 467 4566666 9999999999884 33332211 011
Q ss_pred --------------------eEEEEEeCCCCEEEEEE---------------------------------------cCCe
Q 003279 768 --------------------FHSCVFHPTFPSLLVIG---------------------------------------CYET 788 (834)
Q Consensus 768 --------------------I~svafspdg~~L~sgs---------------------------------------~dg~ 788 (834)
...++++|+...+++.. ..+.
T Consensus 375 ~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~ 454 (599)
T 1w6s_A 375 GTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQ 454 (599)
T ss_dssp CCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEE
T ss_pred CCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCe
Confidence 12456777766655532 2368
Q ss_pred EEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 789 LELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 789 I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
|..||+.+++.+-...+..++..-.+...+.+|+.++.||.|+.||
T Consensus 455 l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D 500 (599)
T 1w6s_A 455 IKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARD 500 (599)
T ss_dssp EEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred EEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEE
Confidence 9999999998873222222222222233567777889999998875
No 250
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.85 E-value=4.3e-06 Score=101.68 Aligned_cols=274 Identities=8% Similarity=-0.060 Sum_probs=177.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec--------------cCCCCeEEEEECCCCCEEEEEeCCCe
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--------------EHTQWITDVRFSPSLSRLATSSADRT 617 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~--------------~h~~~I~~l~fspdg~~Latgs~Dg~ 617 (834)
...|.++...++|. |..|+..+-|.++|..+........ -....|.++...+++. |..|+.++-
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 45699999988885 5557665678899987765432211 1345799999988876 556666777
Q ss_pred EEEEecCCCCceeeee--------ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee----cCCCeeEE
Q 003279 618 VRVWDTENPDYSLRTF--------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQM 685 (834)
Q Consensus 618 I~IWDl~s~~~~i~~~--------~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~----~~~~i~~l 685 (834)
|..|+........... ......|.++...+++. |..|+.++-|.+||..++....... ....|.++
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i 412 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK--LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCS 412 (781)
T ss_dssp EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC--EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEE
T ss_pred EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC--EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEE
Confidence 8999887654322111 11235689999887765 3356656679999987654332211 12457788
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEee-
Q 003279 686 RFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS- 762 (834)
Q Consensus 686 ~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~--~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~- 762 (834)
...+++. |.+++.++.|..||..+++...... .....|.++..++++.+.+++. +.|.+||..++.. ..+....
T Consensus 413 ~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~-~~~~~~~~ 489 (781)
T 3v9f_A 413 LKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKV-IHHYDTSN 489 (781)
T ss_dssp EECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSC-CEEECTTT
T ss_pred EECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeE-EecccCcc
Confidence 8776654 6667777889999998775433221 1346799999998887666554 6699999877532 1111111
Q ss_pred --cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEecc----CCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 763 --CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA----HDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 763 --~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~----h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.....|.++...++|. |.+++.++-|..||..+++...+.. ....|.++...++|.+.++. .+|.|..||
T Consensus 490 ~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d 565 (781)
T 3v9f_A 490 SQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPS 565 (781)
T ss_dssp SSCSCSCEEEEEECTTCC-EEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESC
T ss_pred cccccceeEEEEEcCCCC-EEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEEC
Confidence 1135788999998887 5666665568889988877665432 23568999998888866654 466546654
No 251
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.84 E-value=5.8e-07 Score=94.49 Aligned_cols=186 Identities=10% Similarity=-0.000 Sum_probs=128.3
Q ss_pred CeEEEEEccCCCcEEEEEeC--CCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEE
Q 003279 639 TVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRL 715 (834)
Q Consensus 639 ~V~sl~fspdg~~llasgs~--Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~ 715 (834)
....+.|++++ .++++.+. ++.|.++|+.+++.+..+..........+..+++.++++.. ++.+.++|..+.+.+.
T Consensus 22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~ 100 (266)
T 2iwa_A 22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIK 100 (266)
T ss_dssp CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEE
Confidence 46799999985 55555543 57999999999999998876554333333444667777665 6899999999999988
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC-----CceEEEEEeCCCCEEEEEE-cCCe
Q 003279 716 KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG-----NKFHSCVFHPTFPSLLVIG-CYET 788 (834)
Q Consensus 716 ~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~-----~~I~svafspdg~~L~sgs-~dg~ 788 (834)
++...... ...+++||+.++++. ++.|.++|..+. +.+..+.... ..++.+.|. ++ .|++.. .++.
T Consensus 101 ~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~---~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~ 173 (266)
T 2iwa_A 101 NFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTF---KLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDC 173 (266)
T ss_dssp EEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTC---CEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSE
T ss_pred EEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCC---cEEEEEEECCCCcccccceeEEEE-CC-EEEEecCCCCe
Confidence 88633111 233455777677666 789999999887 4444443221 236677888 66 455555 4679
Q ss_pred EEEEECCCCeEEEeccC--------------CCCeEEEEEeCCCCE-EEEEecCCcEEE
Q 003279 789 LELWNMTENKTLTLSAH--------------DKLVSSLAASTVNGM-VASASHDKCVKI 832 (834)
Q Consensus 789 I~Iwdl~~~~~~~l~~h--------------~~~V~~lafspdg~~-LaSgs~DG~I~I 832 (834)
|.+.|..+++++....- ......|+|+|+++. ++++...+.|.+
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~ 232 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE 232 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence 99999999998732211 135689999999874 555556666654
No 252
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.79 E-value=6.4e-07 Score=107.08 Aligned_cols=255 Identities=13% Similarity=0.137 Sum_probs=160.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccCC----CCeEE-EEECCCCCEEEEEeC------CCeEEEEecCCCCceeee
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~----~~I~~-l~fspdg~~Latgs~------Dg~I~IWDl~s~~~~i~~ 632 (834)
+..|++++.|+.|+.+|.++++.+..+.... ..+.+ ..+. ++ .+++++. ++.|+.||..+++.....
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 4578888899999999999999987765421 11111 1111 33 4555433 589999999988764333
Q ss_pred ecc--C----------------------------CCCeEEEEEccCCCcEEEEEeCCC-------------------cEE
Q 003279 633 FTG--H----------------------------STTVMSLDFHPSKEDLLCSCDNNS-------------------EIR 663 (834)
Q Consensus 633 ~~~--h----------------------------~~~V~sl~fspdg~~llasgs~Dg-------------------~I~ 663 (834)
... . ......+++.++.. +++.+..++ .|.
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 211 0 01112467877765 555665554 499
Q ss_pred EEECCCCceeeEeecC----------CCeeEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEEEEeCCCC--------
Q 003279 664 YWSINNGSCAGVFKCQ----------SGATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHKN-------- 722 (834)
Q Consensus 664 lwDl~s~~~i~~~~~~----------~~i~~l~~sp~g~---~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~-------- 722 (834)
.+|.++++.+..+... .......+..+++ .+++++.+|.++++|.++++.+..+.....
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~ 353 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL 353 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT
T ss_pred EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccc
Confidence 9999999999888752 2223333334554 588888899999999999988754432210
Q ss_pred ----CE------------------------EEEEEcCCCCEEEEE-----------------------------------
Q 003279 723 ----QV------------------------HSVCWNTSGEYLASV----------------------------------- 739 (834)
Q Consensus 723 ----~I------------------------~sl~~spdg~~Lasg----------------------------------- 739 (834)
++ ..++++|+..++++.
T Consensus 354 ~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~ 433 (668)
T 1kv9_A 354 ATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA 433 (668)
T ss_dssp TTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred ccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCC
Confidence 00 125777776665541
Q ss_pred -e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCe-EEEEEe
Q 003279 740 -S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLV-SSLAAS 815 (834)
Q Consensus 740 -s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V-~~lafs 815 (834)
. ++.|+.||+.++ +.+...... .......+...+..+++++.|+.|++||.++++.+ .+....... .-+.+.
T Consensus 434 ~~~~g~l~A~D~~tG---~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~ 509 (668)
T 1kv9_A 434 AVVSGALLAWDPVKQ---KAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFE 509 (668)
T ss_dssp GGCEEEEEEEETTTT---EEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred CCccceEEEEeCCCC---cEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEE
Confidence 1 378999999988 555444432 22333445557788999999999999999999988 333222111 234445
Q ss_pred CCCC-EEEEEe
Q 003279 816 TVNG-MVASAS 825 (834)
Q Consensus 816 pdg~-~LaSgs 825 (834)
.+|+ +++.++
T Consensus 510 ~~G~~yva~~~ 520 (668)
T 1kv9_A 510 LAGRQYVAIMA 520 (668)
T ss_dssp ETTEEEEEEEE
T ss_pred ECCEEEEEEEe
Confidence 6676 444443
No 253
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.77 E-value=1.3e-06 Score=90.99 Aligned_cols=192 Identities=12% Similarity=0.128 Sum_probs=135.1
Q ss_pred eEEEEeccCCC--CeEEEEECCCCCEEEEEeCCC--eEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC
Q 003279 585 TVKSTLEEHTQ--WITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 660 (834)
Q Consensus 585 ~~~~~l~~h~~--~I~~l~fspdg~~Latgs~Dg--~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg 660 (834)
+.+.++. |.. ....+.|+ ++.++.+.+.+| .|+++|+.+++. +..+.- ..........++++.+++..-.++
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv-~~~~~l-~~~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKT-LQQIEL-GKRYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCE-EEEEEC-CTTCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcE-EEEEec-CCccceeEEEEeCCEEEEEEeeCC
Confidence 3455553 443 35788998 666666777665 899999999875 333332 223333333334567777777799
Q ss_pred cEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC--C---CCEEEEEEcCCCCE
Q 003279 661 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH--K---NQVHSVCWNTSGEY 735 (834)
Q Consensus 661 ~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h--~---~~I~sl~~spdg~~ 735 (834)
.+.+||..+.+.+..+.....- ..++++++.|+++..++.|.++|..+.+.+..+.-. . ..++.+.|. +|++
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~eG--~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~l 184 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDGEG--WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEI 184 (262)
T ss_dssp EEEEEETTTCCEEEEEECSSCC--CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEEECccCcEEEEEECCCCc--eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEE
Confidence 9999999999999999875433 344467788888777889999999999887776542 1 345567776 6766
Q ss_pred EEEEe-CCeEEEEEcCCCCCceeEEEeecC------------CCceEEEEEeCCCCEEEEEEcC
Q 003279 736 LASVS-DELVRVWSIGSGSKGECIHELSCT------------GNKFHSCVFHPTFPSLLVIGCY 786 (834)
Q Consensus 736 Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~------------~~~I~svafspdg~~L~sgs~d 786 (834)
++... ++.|.+.|..++ +.+..+... ....+.++|+|+++.|++.+..
T Consensus 185 yan~w~~~~I~vIDp~tG---~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 185 FANVWQTNKIVRIDPETG---KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEETTSSEEEEECTTTC---BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEEEccCCeEEEEECCCC---cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 65554 789999999998 555544432 2456899999999988888765
No 254
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.76 E-value=6.9e-06 Score=87.96 Aligned_cols=237 Identities=9% Similarity=0.022 Sum_probs=146.2
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC--eEE
Q 003279 542 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVR 619 (834)
Q Consensus 542 ~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg--~I~ 619 (834)
...+..+..+ .....++|+++|+++++-..++.|..||.+.. ....+. ....+..+++.++++++++..... .|.
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~ 98 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVV 98 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEE
Confidence 3445555443 45789999999997777667899999997753 333332 335688999999998666554432 466
Q ss_pred EEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce-eeEe-------ec---CCCeeEEEEe
Q 003279 620 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVF-------KC---QSGATQMRFQ 688 (834)
Q Consensus 620 IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~-i~~~-------~~---~~~i~~l~~s 688 (834)
.+|..++......-.........++..++ ..++++...++.|+++|...+.. +... .. -.....+ +
T Consensus 99 ~~d~~~g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s 175 (306)
T 2p4o_A 99 SLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K 175 (306)
T ss_dssp EEECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred EEcCCCCeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence 67766655321111112233445555444 44555554688999999876531 1110 00 1123444 7
Q ss_pred cCCCEEEEEEc-CCeEEEEECCC-CeE--EEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec
Q 003279 689 PRLGRILAAAI-ENYISILDVET-QVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 763 (834)
Q Consensus 689 p~g~~ll~~s~-dg~I~iwDl~t-~~~--~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~ 763 (834)
+++++++++.. .+.|.+||+.. +.. ...+.. ......++++++|.++++.. .+.|.+||.. +.. ..+..+..
T Consensus 176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~-~~~~~~~~ 252 (306)
T 2p4o_A 176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RST-TIIAQAEQ 252 (306)
T ss_dssp EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCE-EEEECGGG
T ss_pred cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCE-EEEeeccc
Confidence 88888877765 57999999874 321 111111 13456789999998776665 7789999865 311 11223333
Q ss_pred CCCceEEEEEe---CCCCEEEEEEcCC
Q 003279 764 TGNKFHSCVFH---PTFPSLLVIGCYE 787 (834)
Q Consensus 764 ~~~~I~svafs---pdg~~L~sgs~dg 787 (834)
......+++|. +++..|++++..+
T Consensus 253 ~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ccCCceEEEEecccCCCCEEEEECCCC
Confidence 34668999998 8988888877654
No 255
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.76 E-value=1.6e-07 Score=112.17 Aligned_cols=266 Identities=9% Similarity=0.037 Sum_probs=155.5
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------cEEEEeCCCCeEE--EEec-cCCCCeEEEEECCCCCEEEEEeC-CCeEEE
Q 003279 557 SCHFSP-DGKLLATGGHDK-----------KAVLWCTESFTVK--STLE-EHTQWITDVRFSPSLSRLATSSA-DRTVRV 620 (834)
Q Consensus 557 sl~fSp-dg~~Lasgs~Dg-----------~I~IWd~~t~~~~--~~l~-~h~~~I~~l~fspdg~~Latgs~-Dg~I~I 620 (834)
++++.+ ++++++.|+.+. .+.+||..+.+.. ..+. .+.....++++..+++++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 888999887643 5889998876532 2332 23344556788889999999984 458999
Q ss_pred EecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEe-CC-----CcEEEEECCCCceeeEe-----ecCCCeeEEEEec
Q 003279 621 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NN-----SEIRYWSINNGSCAGVF-----KCQSGATQMRFQP 689 (834)
Q Consensus 621 WDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs-~D-----g~I~lwDl~s~~~i~~~-----~~~~~i~~l~~sp 689 (834)
||..+..+....-......-.++++.+++. +++.|+ .+ ..+.+||..+++....- ..........+..
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 999876542211111111223455556765 555666 34 57999999887644321 1100000011223
Q ss_pred CCCEEEEEEcC---------CeEEEEECCCCeEEEEEeCCC---------CCEEEEEEcC-CCCEEEEEe-CC-------
Q 003279 690 RLGRILAAAIE---------NYISILDVETQVCRLKLQGHK---------NQVHSVCWNT-SGEYLASVS-DE------- 742 (834)
Q Consensus 690 ~g~~ll~~s~d---------g~I~iwDl~t~~~~~~l~~h~---------~~I~sl~~sp-dg~~Lasgs-Dg------- 742 (834)
++..+++++.+ ..+..||..+.........+. ..-.++.|.. +++++++|+ ++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~ 428 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence 44444555443 457889988765433322111 1234455543 677777766 32
Q ss_pred ----eEEEEEcCCCCCceeEEEe--ecCCC-ceEEEEEeCCCCEEEEEEcC-----------CeEEEEECCCCeEEEecc
Q 003279 743 ----LVRVWSIGSGSKGECIHEL--SCTGN-KFHSCVFHPTFPSLLVIGCY-----------ETLELWNMTENKTLTLSA 804 (834)
Q Consensus 743 ----~I~IwDl~s~~~~~~i~~~--~~~~~-~I~svafspdg~~L~sgs~d-----------g~I~Iwdl~~~~~~~l~~ 804 (834)
.|.+||..+.. ..... ..... ...++++.|+++.+++++.+ ..+.+||..+++...+..
T Consensus 429 ~~~~~v~~yd~~~~~---W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~ 505 (656)
T 1k3i_A 429 TNAHIITLGEPGTSP---NTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP 505 (656)
T ss_dssp CCEEEEECCSTTSCC---EEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCC
T ss_pred CcceEEEcCCCCCCC---eeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCC
Confidence 57788876652 22221 11122 23455677899988888754 468999998877654332
Q ss_pred ---CCCCeEEEEEeCCCCEEEEEec
Q 003279 805 ---HDKLVSSLAASTVNGMVASASH 826 (834)
Q Consensus 805 ---h~~~V~~lafspdg~~LaSgs~ 826 (834)
......+..+.+++++++.|+.
T Consensus 506 ~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 506 NSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCccccccHhhcCCCcEEEecCCC
Confidence 1222334556799999999985
No 256
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.74 E-value=4e-05 Score=82.62 Aligned_cols=228 Identities=8% Similarity=-0.039 Sum_probs=147.7
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEE-eCCCeEEEEecCCC---CceeeeeccCCCCeE
Q 003279 566 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENP---DYSLRTFTGHSTTVM 641 (834)
Q Consensus 566 ~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~s~---~~~i~~~~~h~~~V~ 641 (834)
+|+.+.. ..|+..|+.+.+....+. ....+..++|++++..|+.+ ...+.|..+++... ......+...-....
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 4444443 578999998876665554 34567899999866555544 45689999998751 221222222234568
Q ss_pred EEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcC--CeEEEEECCCCeEEEEEe
Q 003279 642 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE--NYISILDVETQVCRLKLQ 718 (834)
Q Consensus 642 sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~d--g~I~iwDl~t~~~~~~l~ 718 (834)
.+++.+.+..++++-..++.|.++|+........+. .......++++|.++.++.+... +.|..+++..........
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~ 160 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE
Confidence 899987777777777778899999998554443333 23567899999988888777754 689999986443322223
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECC
Q 003279 719 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMT 795 (834)
Q Consensus 719 ~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs-~dg~I~Iwdl~ 795 (834)
..-.....|++++++..|+.+. .+.|..+|+.... ...+............+++.. ..|+.+. ..+.|..++..
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~~--~~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRL 237 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEEEEETT
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEEC--CEEEEEECCCCeEEEEeCC
Confidence 3345688999999887777666 6699999997532 222222212234456777753 3555554 45689999876
Q ss_pred CCe
Q 003279 796 ENK 798 (834)
Q Consensus 796 ~~~ 798 (834)
+++
T Consensus 238 ~g~ 240 (316)
T 1ijq_A 238 TGS 240 (316)
T ss_dssp TCC
T ss_pred CCc
Confidence 654
No 257
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.73 E-value=2.7e-06 Score=99.78 Aligned_cols=254 Identities=9% Similarity=0.004 Sum_probs=155.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccCC----CCeEE-EEECCCCCEEEEEeC------CCeEEEEecCCCCceeee
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~----~~I~~-l~fspdg~~Latgs~------Dg~I~IWDl~s~~~~i~~ 632 (834)
+..|++++.|+.|..+|..+++.+....... ..+.+ .... ++ .+++++. ++.|+.+|..+++...+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 5578888889999999999999987654221 01211 1111 33 5555554 789999999988754332
Q ss_pred eccCCC-------------------------------------CeEEEEEccCCCcEEEEEeC-----------C----C
Q 003279 633 FTGHST-------------------------------------TVMSLDFHPSKEDLLCSCDN-----------N----S 660 (834)
Q Consensus 633 ~~~h~~-------------------------------------~V~sl~fspdg~~llasgs~-----------D----g 660 (834)
...... ....+++.++...+++..+. | +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 221100 00235566665544433321 1 3
Q ss_pred cEEEEECCCCceeeEeecCC----------CeeEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEEEEeCCC------
Q 003279 661 EIRYWSINNGSCAGVFKCQS----------GATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK------ 721 (834)
Q Consensus 661 ~I~lwDl~s~~~i~~~~~~~----------~i~~l~~sp~g~---~ll~~s~dg~I~iwDl~t~~~~~~l~~h~------ 721 (834)
.|..+|.++++.+..+.... ...-+....+++ .+++++.+|.++++|.++++.+..+....
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~ 352 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence 59999999999998886421 111122224563 46677788999999999998887765321
Q ss_pred -------CCE--------------------------EEEEEcCCCCEEEEEe----------------------------
Q 003279 722 -------NQV--------------------------HSVCWNTSGEYLASVS---------------------------- 740 (834)
Q Consensus 722 -------~~I--------------------------~sl~~spdg~~Lasgs---------------------------- 740 (834)
.++ ..++++|+..+|++..
T Consensus 353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 432 (571)
T 2ad6_A 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY 432 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence 111 2357788777666543
Q ss_pred ----------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCC-CC
Q 003279 741 ----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-KL 808 (834)
Q Consensus 741 ----------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~-~~ 808 (834)
++.|..||+.++ +.+..+... ..+....+...+..+++++.|+.|+.||.++++++ .+.... ..
T Consensus 433 ~~~~~~~~~~~g~l~a~D~~tG---~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~ 508 (571)
T 2ad6_A 433 PGPNGPTKKEMGQIRAFDLTTG---KAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGI 508 (571)
T ss_dssp ECTTSTTSCCCEEEEEECTTTC---CEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred cCccccCCCCCCeEEEEECCCC---CEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcE
Confidence 367889999887 444444332 22222333445667888999999999999999988 333221 11
Q ss_pred eEEEEEeCCCCEEEE
Q 003279 809 VSSLAASTVNGMVAS 823 (834)
Q Consensus 809 V~~lafspdg~~LaS 823 (834)
-.-+.+..+|+.++.
T Consensus 509 ~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 509 GSPMTYSFKGKQYIG 523 (571)
T ss_dssp SCCEEEEETTEEEEE
T ss_pred eeeEEEEECCEEEEE
Confidence 122345577775443
No 258
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.72 E-value=1.4e-05 Score=96.98 Aligned_cols=272 Identities=10% Similarity=0.026 Sum_probs=172.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc-------CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 625 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~-------h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s 625 (834)
..|.++...++|.+ ..|+.++-|..||..+++....... ....|.++...+++.+.+. +.+ -|.+||..+
T Consensus 163 ~~i~~i~~d~~g~l-wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~ 239 (781)
T 3v9f_A 163 EQTWTATEAEDGKL-YIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIG-TSK-GLALFNANT 239 (781)
T ss_dssp CCEEEEEEEETTEE-EEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEE-ETT-EEEEEETTT
T ss_pred cceEEEEECCCCCE-EEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEE-eCC-cHheECCCC
Confidence 45889888888754 4566666799999888765432211 2356999999888876554 445 588999876
Q ss_pred CCceeeee------ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee---------------cCCCeeE
Q 003279 626 PDYSLRTF------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------------CQSGATQ 684 (834)
Q Consensus 626 ~~~~i~~~------~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~---------------~~~~i~~ 684 (834)
........ ......|.++...+++. +..|+..+-|.++|..++....... ....|.+
T Consensus 240 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~ 317 (781)
T 3v9f_A 240 ETFTNFHNNPGNIHGALSSYIFSIKQLKDNK--LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARY 317 (781)
T ss_dssp TEEEC-----------CCCCEEEEEECTTSE--EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEE
T ss_pred CcEEEEEcCCCccccccCceEEEEEECCCCC--EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEE
Confidence 44211111 11245689998887764 4456655678899988765432221 1345888
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe---------CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCc
Q 003279 685 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQ---------GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKG 755 (834)
Q Consensus 685 l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~---------~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~ 755 (834)
+....++. |.+|+.++.|..|+..+........ .....|.+++.+++|.+.+...++-|.+||..++...
T Consensus 318 i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~ 396 (781)
T 3v9f_A 318 IFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAI 396 (781)
T ss_dssp EEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEE
T ss_pred EEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEE
Confidence 88888754 6778878889999987654322110 0235699999998888776655667999997654110
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEecc---CCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 756 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 756 ~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~---h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
............|.++...+++. |.+++.++.|.+||..+++...+.. ....|.++...+++.+.+. +.+| |.+
T Consensus 397 ~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~~G-l~~ 473 (781)
T 3v9f_A 397 YNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIG-THAG-VFV 473 (781)
T ss_dssp CC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEE-ETTE-EEE
T ss_pred EccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEE-ECCc-eEE
Confidence 00000122346788888888876 6667777789999998887665432 3567999998888775554 4444 554
Q ss_pred e
Q 003279 833 W 833 (834)
Q Consensus 833 W 833 (834)
|
T Consensus 474 ~ 474 (781)
T 3v9f_A 474 I 474 (781)
T ss_dssp E
T ss_pred E
Confidence 4
No 259
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.72 E-value=1.8e-06 Score=90.06 Aligned_cols=179 Identities=8% Similarity=0.027 Sum_probs=126.4
Q ss_pred CCeEEEEEccCCCcEEEEEeCCC--cEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEE
Q 003279 638 TTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCR 714 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasgs~Dg--~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~ 714 (834)
.....|.|+ + ..++.+++.+| .|+++|+.+++.+..+..........+.++++.|+.... ++.+.+||.++.+.+
T Consensus 43 ~ftqGL~~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 43 AFTEGFFYR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQV 120 (262)
T ss_dssp CEEEEEEEE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEE
T ss_pred cccceEEEE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEE
Confidence 335788998 5 46777777766 899999999999999887766655444555667777765 789999999999999
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC--C---CceEEEEEeCCCCEEEEEE-cCC
Q 003279 715 LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT--G---NKFHSCVFHPTFPSLLVIG-CYE 787 (834)
Q Consensus 715 ~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~--~---~~I~svafspdg~~L~sgs-~dg 787 (834)
.++...... ..++ +|+..|+.+. ++.|.++|..+. +.+..+... . ..++.+.|. +|. |++.. .++
T Consensus 121 ~ti~~~~eG-~glt--~dg~~L~~SdGs~~i~~iDp~T~---~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w~~~ 192 (262)
T 3nol_A 121 RSFNYDGEG-WGLT--HNDQYLIMSDGTPVLRFLDPESL---TPVRTITVTAHGEELPELNELEWV-DGE-IFANVWQTN 192 (262)
T ss_dssp EEEECSSCC-CCEE--ECSSCEEECCSSSEEEEECTTTC---SEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSS
T ss_pred EEEECCCCc-eEEe--cCCCEEEEECCCCeEEEEcCCCC---eEEEEEEeccCCccccccceeEEE-CCE-EEEEEccCC
Confidence 888743321 2344 5677666665 778999999887 444443332 1 334557776 665 55555 567
Q ss_pred eEEEEECCCCeEEEeccC-------------CCCeEEEEEeCCCCEEEEEec
Q 003279 788 TLELWNMTENKTLTLSAH-------------DKLVSSLAASTVNGMVASASH 826 (834)
Q Consensus 788 ~I~Iwdl~~~~~~~l~~h-------------~~~V~~lafspdg~~LaSgs~ 826 (834)
.|.+.|..+++++....- ....+.|+|+|+++.|+..+.
T Consensus 193 ~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 193 KIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred eEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 999999999998732211 235689999998887666553
No 260
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.71 E-value=6.3e-06 Score=96.80 Aligned_cols=264 Identities=9% Similarity=0.023 Sum_probs=160.7
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCe---------EEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeecc
Q 003279 565 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI---------TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 635 (834)
Q Consensus 565 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I---------~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~ 635 (834)
..|++++.++.|+.+|..+++.+-.+....... ..+++ .+..|++++.|+.|..+|..+++.....-..
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 355556654459999999999987765432210 11222 3567888889999999999998864433221
Q ss_pred C-C--CCeE-EEEEcc---CCCcEEEEEe------CCCcEEEEECCCCceeeEeecCCC---------------------
Q 003279 636 H-S--TTVM-SLDFHP---SKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSG--------------------- 681 (834)
Q Consensus 636 h-~--~~V~-sl~fsp---dg~~llasgs------~Dg~I~lwDl~s~~~i~~~~~~~~--------------------- 681 (834)
. . ..+. ...+.. +++.++++++ .++.|+.+|..+|+.+........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 1 0 0111 111111 1222444544 378999999999998876653210
Q ss_pred ---------------------eeEEEEecCCCEEEEEEc--------------------C----CeEEEEECCCCeEEEE
Q 003279 682 ---------------------ATQMRFQPRLGRILAAAI--------------------E----NYISILDVETQVCRLK 716 (834)
Q Consensus 682 ---------------------i~~l~~sp~g~~ll~~s~--------------------d----g~I~iwDl~t~~~~~~ 716 (834)
-..++++++.+.++++.. | +.|..+|.++++.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 013566777788887773 2 5899999999999988
Q ss_pred EeC--CC--------CCEEEEEEc-CCCC---EEEEEe-CCeEEEEEcCCCCCceeEEEeecCC-------------Cc-
Q 003279 717 LQG--HK--------NQVHSVCWN-TSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG-------------NK- 767 (834)
Q Consensus 717 l~~--h~--------~~I~sl~~s-pdg~---~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~-------------~~- 767 (834)
+.. |. .++. +... .+|+ +++.++ +|.++++|..+++ .+..+.... .+
T Consensus 307 ~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~lw~~~~~~~~~~~~~~~~~~g~p~ 382 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGK---LQNAFPFVDNITWASHIDLKTGRPV 382 (582)
T ss_dssp EESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCC---EEEEEESSSCCCSEEEECTTTCCEE
T ss_pred EeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCC---EecccccccCccccccccccCCCEe
Confidence 753 32 1221 2222 4674 667777 9999999999884 333322211 00
Q ss_pred -------------------------------eEEEEEeCCCCEEEEEE--------------------------------
Q 003279 768 -------------------------------FHSCVFHPTFPSLLVIG-------------------------------- 784 (834)
Q Consensus 768 -------------------------------I~svafspdg~~L~sgs-------------------------------- 784 (834)
...++++|+...+++..
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~ 462 (582)
T 1flg_A 383 EREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYD 462 (582)
T ss_dssp ECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCS
T ss_pred EccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCC
Confidence 01346677666555543
Q ss_pred -cCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 785 -CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 785 -~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.++.|..||+.+++.+-...+...+..-.....+.+++.++.||.|+.||
T Consensus 463 ~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D 513 (582)
T 1flg_A 463 DHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFD 513 (582)
T ss_dssp SCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred CCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEE
Confidence 25789999999999872222222332222223467788899999999876
No 261
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.70 E-value=1.8e-05 Score=86.70 Aligned_cols=237 Identities=9% Similarity=0.002 Sum_probs=153.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEE-eCCCeEEEEecCCCCceee
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLR 631 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~s~~~~i~ 631 (834)
+..+|.+..++. +|+.+. ...|+..++........+.. ...+..++|++....|+.+ ...+.|+.+++..... ..
T Consensus 34 d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~ 109 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EE 109 (349)
T ss_dssp TSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE
T ss_pred CCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-eE
Confidence 345566666644 555444 35688888877655554543 3457899999765555544 4678899999886543 22
Q ss_pred eeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcC--CeEEEEEC
Q 003279 632 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE--NYISILDV 708 (834)
Q Consensus 632 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~d--g~I~iwDl 708 (834)
.+.........+++.+.+..++++-...+.|.++++........+.. ......++++|.++.|+.+... +.|..+++
T Consensus 110 ~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~ 189 (349)
T 3v64_C 110 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 189 (349)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence 22223345678999987777877777788999999985543333322 3457899999987877777653 78999998
Q ss_pred CCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-c
Q 003279 709 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-C 785 (834)
Q Consensus 709 ~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs-~ 785 (834)
........+...-.....|+|++++..|+.+. .+.|..+|+..... ...+.........+++. .+ .|+.+. .
T Consensus 190 dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~---~~~~~~~~~~P~giav~-~~-~ly~td~~ 264 (349)
T 3v64_C 190 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR---KAVISQGLPHPFAITVF-ED-SLYWTDWH 264 (349)
T ss_dssp TSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECSSCSSEEEEEEE-TT-EEEEEETT
T ss_pred CCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce---EEEEeCCCCCceEEEEE-CC-EEEEecCC
Confidence 75433222222345678999998877777666 67899999875421 11222234456777773 33 455554 4
Q ss_pred CCeEEEEECCCCe
Q 003279 786 YETLELWNMTENK 798 (834)
Q Consensus 786 dg~I~Iwdl~~~~ 798 (834)
.+.|..++..+++
T Consensus 265 ~~~V~~~~~~~G~ 277 (349)
T 3v64_C 265 TKSINSANKFTGK 277 (349)
T ss_dssp TTEEEEEETTTCC
T ss_pred CCeEEEEEccCCC
Confidence 5688888855554
No 262
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.70 E-value=1.5e-06 Score=90.64 Aligned_cols=191 Identities=9% Similarity=0.048 Sum_probs=135.3
Q ss_pred eEEEEeccCC--CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 003279 585 TVKSTLEEHT--QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 662 (834)
Q Consensus 585 ~~~~~l~~h~--~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 662 (834)
+.+.++ .|. .....+.|+ ++.++++.+.+|.|+++|+.+++..... .........+++ +++.+++..-.++.+
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~--~g~~Ly~ltw~~~~v 118 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLAS--DGERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEE--CSSCEEEEESSSCEE
T ss_pred EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEE--eCCEEEEEEccCCEE
Confidence 344455 233 335688887 4566777778889999999998764333 322222233544 456677777789999
Q ss_pred EEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC-----CCEEEEEEcCCCCEEE
Q 003279 663 RYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGEYLA 737 (834)
Q Consensus 663 ~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~-----~~I~sl~~spdg~~La 737 (834)
.+||..+.+.+..+.....-..++ ++++.|+++..++.|.++|..+.+.+..+.-.. ..++.+.|. +|++++
T Consensus 119 ~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lya 195 (268)
T 3nok_A 119 FTWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYA 195 (268)
T ss_dssp EEEETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EEEECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEE
Confidence 999999999999998755434444 567888888888999999999998887765421 245677877 776665
Q ss_pred EEe-CCeEEEEEcCCCCCceeEEEeecC-------------CCceEEEEEeCCCCEEEEEEcC
Q 003279 738 SVS-DELVRVWSIGSGSKGECIHELSCT-------------GNKFHSCVFHPTFPSLLVIGCY 786 (834)
Q Consensus 738 sgs-Dg~I~IwDl~s~~~~~~i~~~~~~-------------~~~I~svafspdg~~L~sgs~d 786 (834)
... ++.|.+.|..++ +.+..+... ....+.|+|+|+++.|++.+..
T Consensus 196 nvw~s~~I~vIDp~TG---~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 196 NIWHSSDVLEIDPATG---TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp EETTCSEEEEECTTTC---BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred EECCCCeEEEEeCCCC---cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 554 779999999998 455444321 2467899999998877777654
No 263
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.65 E-value=1.9e-05 Score=87.83 Aligned_cols=236 Identities=9% Similarity=-0.003 Sum_probs=153.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEE-EEeCCCeEEEEecCCCCceeeee
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTF 633 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~La-tgs~Dg~I~IWDl~s~~~~i~~~ 633 (834)
..|.+..++ .+|+.+. ...|+.+++........+.. ...+..++|++.+..|+ +-...+.|+.+++..... ...+
T Consensus 79 ~~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~ 154 (386)
T 3v65_B 79 RSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVV 154 (386)
T ss_dssp SCEEECSSC-CEEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EEEE
T ss_pred CeECCcccc-ceeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EEEE
Confidence 445555553 3555444 36788899887665555543 34578999997655555 444678899999886542 2222
Q ss_pred ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcC--CeEEEEECCC
Q 003279 634 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE--NYISILDVET 710 (834)
Q Consensus 634 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~d--g~I~iwDl~t 710 (834)
.........+++.+.+..++++-...+.|.++++........+.. ......++++|.++.|+.+... +.|..+++..
T Consensus 155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 234 (386)
T 3v65_B 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 234 (386)
T ss_dssp CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence 323345678889887777777777778899999875543333332 2457899999988888777653 6899999875
Q ss_pred CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCC
Q 003279 711 QVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYE 787 (834)
Q Consensus 711 ~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs-~dg 787 (834)
..........-.....|+|++++..|+.+. .+.|..+|+.... ....+.........+++. .+ .|+.+. ..+
T Consensus 235 ~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~P~giav~-~~-~ly~td~~~~ 309 (386)
T 3v65_B 235 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVF-ED-SLYWTDWHTK 309 (386)
T ss_dssp CSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS---CEEEECSSCSSEEEEEEE-TT-EEEEEETTTT
T ss_pred CCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe---eEEEEECCCCCceEEEEE-CC-EEEEeeCCCC
Confidence 543333333445678999998777777666 6789999987542 122222234456777773 33 455544 456
Q ss_pred eEEEEECCCCeE
Q 003279 788 TLELWNMTENKT 799 (834)
Q Consensus 788 ~I~Iwdl~~~~~ 799 (834)
.|..++..+++.
T Consensus 310 ~V~~~~~~~G~~ 321 (386)
T 3v65_B 310 SINSANKFTGKN 321 (386)
T ss_dssp EEEEEETTTCCS
T ss_pred eEEEEECCCCcc
Confidence 888888655543
No 264
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.64 E-value=6.7e-06 Score=84.91 Aligned_cols=192 Identities=15% Similarity=0.140 Sum_probs=134.2
Q ss_pred eEEEEeccCC--CCeEEEEECCCCCEEEEEeCC--CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC
Q 003279 585 TVKSTLEEHT--QWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 660 (834)
Q Consensus 585 ~~~~~l~~h~--~~I~~l~fspdg~~Latgs~D--g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg 660 (834)
+.+.++ .|. .....+.|+. +.++.+.+.+ +.|+++|+.+++. +....-. ...........++.+++..-.++
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv-~~~~~l~-~~~fgeGi~~~~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRI-LQRAEVP-PPYFGAGIVAWRDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCE-EEEEECC-TTCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCE-EEEEeCC-CCcceeEEEEeCCEEEEEEeeCC
Confidence 445555 344 4466899986 5555565554 4899999999875 3333322 22322323333566777777899
Q ss_pred cEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC-----CCEEEEEEcCCCCE
Q 003279 661 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGEY 735 (834)
Q Consensus 661 ~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~-----~~I~sl~~spdg~~ 735 (834)
.+.+||..+.+.+..+.....-..+ .++++.|+++..++.|.++|..+.+.+.++.-.. ..++.+.|. +|++
T Consensus 86 ~v~v~D~~tl~~~~ti~~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l 162 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL 162 (243)
T ss_dssp EEEEEETTTTEEEEEEECSSCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEEECCcCcEEEEEeCCCCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE
Confidence 9999999999999999875544444 4667888888888999999999998887776422 345667776 6766
Q ss_pred EEEEe-CCeEEEEEcCCCCCceeEEEeec-------------CCCceEEEEEeCCCCEEEEEEcC
Q 003279 736 LASVS-DELVRVWSIGSGSKGECIHELSC-------------TGNKFHSCVFHPTFPSLLVIGCY 786 (834)
Q Consensus 736 Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-------------~~~~I~svafspdg~~L~sgs~d 786 (834)
++... ++.|.+.|..++ +.+..+.. .....+.++++|+++.|++.+..
T Consensus 163 yanvw~s~~I~vIDp~tG---~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 163 LANVWLTSRIARIDPASG---KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp EEEETTTTEEEEECTTTC---BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred EEEECCCCeEEEEECCCC---CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 65554 779999999998 45554442 12356899999999888887764
No 265
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.63 E-value=2.8e-06 Score=88.57 Aligned_cols=177 Identities=7% Similarity=0.014 Sum_probs=124.3
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEE
Q 003279 638 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLK 716 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s-~dg~I~iwDl~t~~~~~~ 716 (834)
.....|.|+ ++.++++.+.+|.|+++|+.+++.+..+ ........-+.++++.|+... .++.+.+||.++.+.+.+
T Consensus 55 ~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 55 AFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp CCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 345788887 4678888888999999999999999888 656554433444555666555 478999999999999998
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec--CC---CceEEEEEeCCCCEEEEEE-cCCeE
Q 003279 717 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TG---NKFHSCVFHPTFPSLLVIG-CYETL 789 (834)
Q Consensus 717 l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~--~~---~~I~svafspdg~~L~sgs-~dg~I 789 (834)
+..... -..++ +|+..|+.+. ++.|.++|..+. +.+..+.. .. ..++.+.|. +|. |++.. .++.|
T Consensus 132 i~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~---~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I 203 (268)
T 3nok_A 132 TRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGF---ALVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDV 203 (268)
T ss_dssp EECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTC---CEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEE
T ss_pred EeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCC---eEEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeE
Confidence 875322 23444 4677777777 889999999887 44444333 22 234667777 664 55555 46799
Q ss_pred EEEECCCCeEEEecc--------------CCCCeEEEEEeCCCCEEEEEe
Q 003279 790 ELWNMTENKTLTLSA--------------HDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 790 ~Iwdl~~~~~~~l~~--------------h~~~V~~lafspdg~~LaSgs 825 (834)
.+.|..+++++.... -....+.|+|+|+++.|+..+
T Consensus 204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 999999999872221 124678999999876544443
No 266
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.63 E-value=1e-05 Score=83.58 Aligned_cols=178 Identities=9% Similarity=0.053 Sum_probs=124.6
Q ss_pred CCeEEEEEccCCCcEEEEEeCCC--cEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEE
Q 003279 638 TTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCR 714 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasgs~Dg--~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~ 714 (834)
.....+.|+. ..++.+.+.+| .|+++|+.+++.+..+..........+...++.|+.... ++.+.+||.++.+.+
T Consensus 21 ~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 21 AFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPR 98 (243)
T ss_dssp CCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEE
Confidence 4566899985 45777777654 899999999999999887666655444445666766654 789999999999999
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC-----CceEEEEEeCCCCEEEEEE-cCC
Q 003279 715 LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG-----NKFHSCVFHPTFPSLLVIG-CYE 787 (834)
Q Consensus 715 ~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~-----~~I~svafspdg~~L~sgs-~dg 787 (834)
.++..... -..++ +++..|+.+. ++.|.++|..+. +.+..+.... ..++.+.|. +|. |++.. .++
T Consensus 99 ~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~---~~~~~I~V~~~g~~~~~lNeLe~~-~G~-lyanvw~s~ 170 (243)
T 3mbr_X 99 ARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTL---QQVGSIKVTAGGRPLDNLNELEWV-NGE-LLANVWLTS 170 (243)
T ss_dssp EEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTC---CEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTTT
T ss_pred EEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCC---eEEEEEEEccCCcccccceeeEEe-CCE-EEEEECCCC
Confidence 98875332 23454 4566666655 789999999887 4444443321 344566665 555 55554 567
Q ss_pred eEEEEECCCCeEEEecc--------------CCCCeEEEEEeCCCCEEEEEe
Q 003279 788 TLELWNMTENKTLTLSA--------------HDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 788 ~I~Iwdl~~~~~~~l~~--------------h~~~V~~lafspdg~~LaSgs 825 (834)
.|.+.|..+++++.... .....+.|+|+|+++.|+..+
T Consensus 171 ~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 171 RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 99999999999883211 123678999999877665554
No 267
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.62 E-value=1.2e-05 Score=94.45 Aligned_cols=251 Identities=9% Similarity=-0.008 Sum_probs=151.3
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEeccCC----CCeEE-EEECCCCCEEEEEe------CCCeEEEEecCCCCceeeeecc
Q 003279 567 LATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRTFTG 635 (834)
Q Consensus 567 Lasgs~Dg~I~IWd~~t~~~~~~l~~h~----~~I~~-l~fspdg~~Latgs------~Dg~I~IWDl~s~~~~i~~~~~ 635 (834)
|++++.|+.|+.+|..+++.+....... ..+.+ ..+. ++ .+++++ .++.|+.+|..+++...+....
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 8888899999999999999987654322 01211 1111 34 455554 3899999999988764333222
Q ss_pred CCC------------------------------------Ce-EEEEEccCCCcEEEEEeCC----------------CcE
Q 003279 636 HST------------------------------------TV-MSLDFHPSKEDLLCSCDNN----------------SEI 662 (834)
Q Consensus 636 h~~------------------------------------~V-~sl~fspdg~~llasgs~D----------------g~I 662 (834)
... .+ ..+++.+... +++.+..+ +.|
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g-~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTN-LIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCC-EEEEeCCCCccccCcccCCCccccceE
Confidence 110 01 1345556655 44444433 489
Q ss_pred EEEECCCCceeeEeecCCC----------eeEEEEe-cCC---CEEEEEEcCCeEEEEECCCCeEEEEEeCCC-------
Q 003279 663 RYWSINNGSCAGVFKCQSG----------ATQMRFQ-PRL---GRILAAAIENYISILDVETQVCRLKLQGHK------- 721 (834)
Q Consensus 663 ~lwDl~s~~~i~~~~~~~~----------i~~l~~s-p~g---~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~------- 721 (834)
..+|.++++.+..+..... ..-+... .++ ..++.++.+|.++++|.++++.+.......
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~ 360 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence 9999999999988875321 1112222 456 356667789999999999999887665211
Q ss_pred ------CCE--------------------------EEEEEcCCCCEEEEEe-----------------------------
Q 003279 722 ------NQV--------------------------HSVCWNTSGEYLASVS----------------------------- 740 (834)
Q Consensus 722 ------~~I--------------------------~sl~~spdg~~Lasgs----------------------------- 740 (834)
.++ ..++++|+..++++..
T Consensus 361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 111 1356677666554431
Q ss_pred -----------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCC-
Q 003279 741 -----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDK- 807 (834)
Q Consensus 741 -----------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~- 807 (834)
++.|..||+.++ +.+-..... .+...-.+...+..+++++.|+.|+.||.++++++ .+.....
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG---~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~ 516 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITG---DYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGA 516 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTC---CEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred CCcCCcccCCCcCeEEEEECCCC---CEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCc
Confidence 256788888877 333333221 11111123335667888999999999999999988 3332221
Q ss_pred CeEEEEEeCCCC-EEEEE
Q 003279 808 LVSSLAASTVNG-MVASA 824 (834)
Q Consensus 808 ~V~~lafspdg~-~LaSg 824 (834)
...-+.|..+|+ |+++.
T Consensus 517 ~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 517 IGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp CSCCEEEEETTEEEEEEE
T ss_pred EeccEEEEeCCEEEEEEE
Confidence 222355567777 44443
No 268
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.60 E-value=8.4e-06 Score=92.09 Aligned_cols=233 Identities=9% Similarity=0.081 Sum_probs=140.6
Q ss_pred CeEEEEECC-CCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC----cEEEEECCCC
Q 003279 596 WITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNG 670 (834)
Q Consensus 596 ~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg----~I~lwDl~s~ 670 (834)
....|+|+| ++..|+++...+.|+.+|+.... +..+.........|+|+++++.++++...++ .+.+++.. +
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~--v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY--VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-S 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE--EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-G
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE--EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-C
Confidence 457899998 45566666655889999988644 3444445567889999999886776654333 34444433 3
Q ss_pred cee--eEeecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEEe-CCCCCEEEEEEcCCCCEEEEEe--CCeE
Q 003279 671 SCA--GVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS--DELV 744 (834)
Q Consensus 671 ~~i--~~~~~~~~i~~l~~sp~g~~ll~~s-~dg~I~iwDl~t~~~~~~l~-~h~~~I~sl~~spdg~~Lasgs--Dg~I 744 (834)
... ..+........++++|+++.|+++. .++.|..||...+....... +.......++|+|+|++|+.+. .+.|
T Consensus 215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 222 2333345577888999545555554 56899999998776522222 1224578999999999666665 6789
Q ss_pred EEEEcCCCC-CceeEEEeecC---------------CCceE-EEEEe--------CCCCEEEEEE-cCCeEEEEECCCCe
Q 003279 745 RVWSIGSGS-KGECIHELSCT---------------GNKFH-SCVFH--------PTFPSLLVIG-CYETLELWNMTENK 798 (834)
Q Consensus 745 ~IwDl~s~~-~~~~i~~~~~~---------------~~~I~-svafs--------pdg~~L~sgs-~dg~I~Iwdl~~~~ 798 (834)
.+++..... ....+..+... -.... .+++. +++. |+++. ..+.|+.++ .++.
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~-lyvaD~~n~~I~~i~-~~G~ 372 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYD-FYFCDRENHCIRILT-PQGR 372 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEE-EEEEEGGGTEEEEEC-TTSE
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCe-EEEEECCCcEEEEEC-CCCc
Confidence 998876421 00011111111 01123 45554 2344 55554 456899998 4566
Q ss_pred EEEeccC---------C---------CCeEEEEEeCC-CCEEEEEecCCcEEEe
Q 003279 799 TLTLSAH---------D---------KLVSSLAASTV-NGMVASASHDKCVKIW 833 (834)
Q Consensus 799 ~~~l~~h---------~---------~~V~~lafspd-g~~LaSgs~DG~I~IW 833 (834)
...+.+. + .....|+++++ +.++++-.....|+.+
T Consensus 373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 426 (430)
T 3tc9_A 373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI 426 (430)
T ss_dssp EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 5544322 1 25789999995 5555554455667654
No 269
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.59 E-value=9e-05 Score=80.25 Aligned_cols=276 Identities=8% Similarity=-0.017 Sum_probs=154.5
Q ss_pred CeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec----cCCCCeEEEEECCCCCEEEEEeC
Q 003279 539 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPSLSRLATSSA 614 (834)
Q Consensus 539 g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~----~h~~~I~~l~fspdg~~Latgs~ 614 (834)
+.++..+. + .....+.+|.|.+++..+++ +.+|.|. ...+.++.-..+. .....+.+|.|.+ +. ++.++.
T Consensus 24 g~~W~~~~-~-~~~~~~~~v~~~~~~~~~~~-G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~ 97 (327)
T 2xbg_A 24 YNPWEAIQ-L-PTTATILDMSFIDRHHGWLV-GVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGE 97 (327)
T ss_dssp SCCEEEEE-C-SCSSCEEEEEESSSSCEEEE-ETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEE
T ss_pred CCCceEee-c-CCCCcEEEEEECCCCcEEEE-cCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEEC
Confidence 44444443 2 23457999999888877774 4567653 3334333222221 2345688999976 44 444456
Q ss_pred CCeEEEEecCCCCceeeeec---cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee--cCCCeeEEEEec
Q 003279 615 DRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQP 689 (834)
Q Consensus 615 Dg~I~IWDl~s~~~~i~~~~---~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~--~~~~i~~l~~sp 689 (834)
++.|+. ...+........ .+...+..|.+.+++. +++++ .++.|.. ....++.-.... ....+..+.+.+
T Consensus 98 ~g~i~~--S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~-~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~ 172 (327)
T 2xbg_A 98 PPIMLH--TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS-AEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP 172 (327)
T ss_dssp TTEEEE--ESSTTSSCEECCCCTTCSSCEEEEEEEETTE-EEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT
T ss_pred CCeEEE--ECCCCCCceECccccCCCCCeEEEEEECCCC-EEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC
Confidence 665544 322222222221 2335577888776643 55444 4554432 222233222222 234688899999
Q ss_pred CCCEEEEEEcCCeEEE-EEC--CCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeec---
Q 003279 690 RLGRILAAAIENYISI-LDV--ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC--- 763 (834)
Q Consensus 690 ~g~~ll~~s~dg~I~i-wDl--~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~--- 763 (834)
++..++++ .++.|+. .|- .+.+.+. ......+..+.+.+++.+++++.+|.+++.+...+ .....+..
T Consensus 173 ~~~~~~~g-~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G---~tW~~~~~~~~ 246 (327)
T 2xbg_A 173 SGEYVAVS-SRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNS---ENWGELLSPLR 246 (327)
T ss_dssp TSCEEEEE-TTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEE---EEECCCBCTTS
T ss_pred CCcEEEEE-CCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCC---CeeEeccCCcc
Confidence 87665544 4555544 342 3344432 23556789999999998887777888877653322 11111111
Q ss_pred -CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE-ec---cCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 764 -TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LS---AHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 764 -~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~-l~---~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
....+..+++.+++. +++++.++.| ++..+.++.-. +. .+...+.++.|.+++ .+++++.+|.|.-++
T Consensus 247 ~~~~~~~~v~~~~~~~-~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 247 RNSVGFLDLAYRTPNE-VWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp SCCSCEEEEEESSSSC-EEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred cCCcceEEEEecCCCE-EEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 223588899998776 4555567766 44555554332 22 234678889997554 466677889887653
No 270
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.56 E-value=0.00012 Score=78.72 Aligned_cols=219 Identities=9% Similarity=0.016 Sum_probs=140.8
Q ss_pred EEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC----CceeeEeec-CCCe
Q 003279 608 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFKC-QSGA 682 (834)
Q Consensus 608 ~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s----~~~i~~~~~-~~~i 682 (834)
+|+.+ ....|+..|+..... ...+ .....+..++|++.+..++++-..++.|..+++.. ......+.. ....
T Consensus 3 ~ll~~-~~~~I~~i~~~~~~~-~~~~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 79 (316)
T 1ijq_A 3 YLFFT-NRHEVRKMTLDRSEY-TSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (316)
T ss_dssp EEEEE-CBSSEEEEETTSCCC-EEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred EEEEE-CCCeEEEEECCCcce-Eehh-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence 34444 345689999987553 2222 34456889999998777887777789999999986 222222322 2456
Q ss_pred eEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEEcCCCCCceeE
Q 003279 683 TQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECI 758 (834)
Q Consensus 683 ~~l~~sp~g~~ll~~s-~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--D-g~I~IwDl~s~~~~~~i 758 (834)
..+++++.++.|+++. ..+.|.++|+........+.........++++|.+.+|+.+. . +.|..+++.... ..
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~---~~ 156 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IY 156 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC---EE
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC---eE
Confidence 7899998777776665 468999999986544444443445778999999766665555 3 688888876431 11
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEec---cCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 759 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLS---AHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 759 ~~~~~~~~~I~svafspdg~~L~sgs~d-g~I~Iwdl~~~~~~~l~---~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
............+++++++..|+.+... +.|..+|+.......+. ........|++. .+.++++-...+.|..+
T Consensus 157 ~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~ 234 (316)
T 1ijq_A 157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA 234 (316)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEE
Confidence 1122234567899999988888877754 59999999765433332 223456788885 34455555455666554
No 271
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.56 E-value=1.9e-05 Score=92.77 Aligned_cols=255 Identities=10% Similarity=0.028 Sum_probs=153.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCC----CeE-E-EEECC--CCC-EEEEEe------CCCeEEEEecCCCCc
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ----WIT-D-VRFSP--SLS-RLATSS------ADRTVRVWDTENPDY 628 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~----~I~-~-l~fsp--dg~-~Latgs------~Dg~I~IWDl~s~~~ 628 (834)
+..|++++.|+.|+.+|.++++.+........ .+. . +.... +++ .+++++ .++.|+.+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 45788888999999999999999876643221 111 1 11111 233 565654 378999999998875
Q ss_pred eeeeeccCCC-----------------------------------------CeEEEEEccCCCcEEEEEe----------
Q 003279 629 SLRTFTGHST-----------------------------------------TVMSLDFHPSKEDLLCSCD---------- 657 (834)
Q Consensus 629 ~i~~~~~h~~-----------------------------------------~V~sl~fspdg~~llasgs---------- 657 (834)
.... ..... .-..++++|+...+++..+
T Consensus 197 ~W~~-~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 197 IWMR-PFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EEEE-ESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred Eeec-CCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence 3322 11100 0013456666554443332
Q ss_pred --C-------C----CcEEEEECCCCceeeEeecCC-------CeeE-EEEe---cCCC---EEEEEEcCCeEEEEECCC
Q 003279 658 --N-------N----SEIRYWSINNGSCAGVFKCQS-------GATQ-MRFQ---PRLG---RILAAAIENYISILDVET 710 (834)
Q Consensus 658 --~-------D----g~I~lwDl~s~~~i~~~~~~~-------~i~~-l~~s---p~g~---~ll~~s~dg~I~iwDl~t 710 (834)
. | +.|..+|..+++.+..+.... .+.. +.+. .+++ .+++++.+|.++++|.++
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence 1 2 589999999999998886421 1111 2222 4563 677788899999999999
Q ss_pred CeEEEEEeCCCC--CE-------------------------------------------EEEEEcCCCCEEEEEe-----
Q 003279 711 QVCRLKLQGHKN--QV-------------------------------------------HSVCWNTSGEYLASVS----- 740 (834)
Q Consensus 711 ~~~~~~l~~h~~--~I-------------------------------------------~sl~~spdg~~Lasgs----- 740 (834)
++.+..+..... .. ..++++|+..++++..
T Consensus 356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~ 435 (582)
T 1flg_A 356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE 435 (582)
T ss_dssp CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence 998876654320 00 1245666544444321
Q ss_pred -----------------------------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003279 741 -----------------------------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 791 (834)
Q Consensus 741 -----------------------------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~I 791 (834)
++.|+.||+.++ +.+-...... .+..-.+...+..+++++.|+.|+.
T Consensus 436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG---~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A 511 (582)
T 1flg_A 436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSG---KVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKA 511 (582)
T ss_dssp EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTC---CEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEE
T ss_pred eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCC---CEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEE
Confidence 467889999888 4444433221 2222222334667888999999999
Q ss_pred EECCCCeEE-EeccCCCCeE--EEEEeCCCC-EEEEE
Q 003279 792 WNMTENKTL-TLSAHDKLVS--SLAASTVNG-MVASA 824 (834)
Q Consensus 792 wdl~~~~~~-~l~~h~~~V~--~lafspdg~-~LaSg 824 (834)
||.++++.+ .+... ..+. -+.|..+|+ ||++.
T Consensus 512 ~D~~tG~~lW~~~~~-~g~~a~P~~y~~~G~qYv~~~ 547 (582)
T 1flg_A 512 FDAKSGKELWKFQTG-SGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp EETTTCCEEEEEECS-SCCCSCCEEEEETTEEEEEEE
T ss_pred EECCCCCEEEEecCC-CCcccCceEEEECCEEEEEEE
Confidence 999999998 33332 2222 266677887 44433
No 272
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.54 E-value=7.6e-05 Score=81.68 Aligned_cols=228 Identities=9% Similarity=0.045 Sum_probs=146.7
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEe
Q 003279 597 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 676 (834)
Q Consensus 597 I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~ 676 (834)
.+|.+..++ .+|+.+ ....|+..++..... ..+......+..++|++.+..++++-...+.|..+++........+
T Consensus 36 ~~C~~~~~~-~~ll~~-~~~~I~~i~~~g~~~--~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 111 (349)
T 3v64_C 36 RSCKALGPE-PVLLFA-NRIDIRQVLPHRSEY--TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 111 (349)
T ss_dssp SCEEESSSC-CEEEEE-CBSCEEEECTTSCCE--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CcccccccC-ceeEee-cccceEEEeCCCCee--EEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence 345554443 344433 345588888875432 3333334558899999887778777777889999999876544443
Q ss_pred ec-CCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEEcCC
Q 003279 677 KC-QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGS 751 (834)
Q Consensus 677 ~~-~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--D-g~I~IwDl~s 751 (834)
.. ......+++.+.++.|+.+.. .+.|.++++........+.........++++|.+.+|+.+. . +.|..+++..
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 32 245678999987777766665 57999999886544434444445678999999776666655 4 6888888875
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEE-eccCCCCeEEEEEeCCCCEEEEEecCCc
Q 003279 752 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKC 829 (834)
Q Consensus 752 ~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d-g~I~Iwdl~~~~~~~-l~~h~~~V~~lafspdg~~LaSgs~DG~ 829 (834)
... ...+.........+++++++..|+.+... +.|..+|+....... +.........|++. .+.++++-...+.
T Consensus 192 ~~~---~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~ 267 (349)
T 3v64_C 192 SGR---RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKS 267 (349)
T ss_dssp CSC---EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTE
T ss_pred CCc---EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCe
Confidence 421 11112234457899999988888877654 589999987654332 32334567788873 3444444444455
Q ss_pred EEE
Q 003279 830 VKI 832 (834)
Q Consensus 830 I~I 832 (834)
|..
T Consensus 268 V~~ 270 (349)
T 3v64_C 268 INS 270 (349)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 273
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.54 E-value=6.8e-06 Score=99.57 Aligned_cols=238 Identities=10% Similarity=0.044 Sum_probs=135.9
Q ss_pred CeEEEEEc-CCCCEEEEEeC-CC----cEEEEeCCCC-eEEE-EeccCCCCeEEEEECCCCCEEEEEeCC-----CeEEE
Q 003279 554 KVESCHFS-PDGKLLATGGH-DK----KAVLWCTESF-TVKS-TLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRV 620 (834)
Q Consensus 554 ~V~sl~fS-pdg~~Lasgs~-Dg----~I~IWd~~t~-~~~~-~l~~h~~~I~~l~fspdg~~Latgs~D-----g~I~I 620 (834)
.+...+|| |||++||.+.. +| .|+++|+.++ +.+. .+. .....++|+||++.|+....| ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57889999 99999886643 22 4999999998 6321 111 123578999999888877765 36888
Q ss_pred EecCCCCce-eeeec-cCCCCeEEEEEccCCCcEEEEEeC--CCcEEEEECCCCc--e--eeEeec-CCCeeEEEEecCC
Q 003279 621 WDTENPDYS-LRTFT-GHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGS--C--AGVFKC-QSGATQMRFQPRL 691 (834)
Q Consensus 621 WDl~s~~~~-i~~~~-~h~~~V~sl~fspdg~~llasgs~--Dg~I~lwDl~s~~--~--i~~~~~-~~~i~~l~~sp~g 691 (834)
+++.++... ...+. ........+.|+||++.++++... ...|+++|+.++. . ...... ......+.|+. +
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g 330 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T 330 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence 888765421 22222 233456788999999988877643 3468889998752 2 222221 22334444443 5
Q ss_pred CEEEEEEcC-----CeEEEEECCCCeEEEE-EeCCCC--CEEEEEEcCCCCEEEEE-e-CC--eEEEEEc-------CCC
Q 003279 692 GRILAAAIE-----NYISILDVETQVCRLK-LQGHKN--QVHSVCWNTSGEYLASV-S-DE--LVRVWSI-------GSG 752 (834)
Q Consensus 692 ~~ll~~s~d-----g~I~iwDl~t~~~~~~-l~~h~~--~I~sl~~spdg~~Lasg-s-Dg--~I~IwDl-------~s~ 752 (834)
+.|+..+.. ..|.++|+.++..... +..+.. .+..+.+. +..|+.. . ++ .|.++|+ ..+
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g 408 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMADSQDGVFKAG 408 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEECCTTTSCCCTT
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEecccccccccCC
Confidence 666655543 2688888875311112 222333 34555554 4455444 4 67 5666675 232
Q ss_pred CCceeEEEeecCC-CceEEEEE----eCCCCEE-EEEEcC---CeEEEEECCCCeEE
Q 003279 753 SKGECIHELSCTG-NKFHSCVF----HPTFPSL-LVIGCY---ETLELWNMTENKTL 800 (834)
Q Consensus 753 ~~~~~i~~~~~~~-~~I~svaf----spdg~~L-~sgs~d---g~I~Iwdl~~~~~~ 800 (834)
. .+..+.... ..+..+.+ ++++..+ ++.++. ..|+.+|+.+++..
T Consensus 409 ~---~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~ 462 (751)
T 2xe4_A 409 T---GLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRT 462 (751)
T ss_dssp T---CCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEE
T ss_pred c---cceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEE
Confidence 1 022222111 12233322 3455544 443433 27888888877654
No 274
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.53 E-value=4.2e-05 Score=82.68 Aligned_cols=226 Identities=8% Similarity=0.011 Sum_probs=144.5
Q ss_pred EEEEEeCCCcEEEEeCCCCe--EEEEeccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEecCCCCceeeeeccCCCCeEE
Q 003279 566 LLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 642 (834)
Q Consensus 566 ~Lasgs~Dg~I~IWd~~t~~--~~~~l~~h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~s 642 (834)
+|+.+. ...|+.++++... ....+. ....+..++|.+.+..| ++-...+.|..+++.........+...-.....
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g 83 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG 83 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccE
Confidence 344443 4678889987653 222222 22346789999854444 455567889999988653212222223345678
Q ss_pred EEEccCCCcEEEEEeCCCcEEEEECCCCceeeEe-ecCCCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEEeC
Q 003279 643 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQG 719 (834)
Q Consensus 643 l~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~-~~~~~i~~l~~sp~g~~ll~~s~--dg~I~iwDl~t~~~~~~l~~ 719 (834)
+++.+.+..++++-...+.|.++++........+ ........+++.|.++.|+.+.. .+.|..+++........+..
T Consensus 84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 163 (318)
T 3sov_A 84 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 163 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence 9998877777777777889999999754433333 22345789999998888887774 47899999875432222333
Q ss_pred CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCC
Q 003279 720 HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTE 796 (834)
Q Consensus 720 h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs-~dg~I~Iwdl~~ 796 (834)
.-.....|+|++++..|+.+. .+.|..+|+..... ..+ ..........+++.. ..++.+. ..+.|..++..+
T Consensus 164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~--~~~~~~~P~glav~~--~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAV--VKGSLPHPFALTLFE--DILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE--ECSCCSCEEEEEEET--TEEEEEETTTTEEEEEETTT
T ss_pred CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-EEE--ecCCCCCceEEEEeC--CEEEEEecCCCeEEEEECCC
Confidence 345678999999877777666 67999999875422 222 222344566777753 3455444 456899999866
Q ss_pred Ce
Q 003279 797 NK 798 (834)
Q Consensus 797 ~~ 798 (834)
++
T Consensus 239 G~ 240 (318)
T 3sov_A 239 GE 240 (318)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 275
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.52 E-value=0.00021 Score=79.73 Aligned_cols=230 Identities=8% Similarity=-0.037 Sum_probs=151.2
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEE-eCCCeEEEEecCCCC---ceeeeeccCCCCeE
Q 003279 566 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPD---YSLRTFTGHSTTVM 641 (834)
Q Consensus 566 ~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~s~~---~~i~~~~~h~~~V~ 641 (834)
+|+.+. ...|+..+++.......+. ....+..|+|++.+..|+.+ ...+.|+.+++.... .....+........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 555554 4689999988765554443 45668899999866555555 456889999987521 11223333445678
Q ss_pred EEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEEe
Q 003279 642 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQ 718 (834)
Q Consensus 642 sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~--dg~I~iwDl~t~~~~~~l~ 718 (834)
.|++.+.+..++++-...+.|.+.+++.......+. .......++++|.+++|+.+.. .+.|..+++........+.
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~ 242 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 242 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence 899998777788777778899999998665544444 2345889999998888887764 3789999987654433334
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECC
Q 003279 719 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 795 (834)
Q Consensus 719 ~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~-dg~I~Iwdl~ 795 (834)
..-.....|++++++..|+.+. .+.|..+|+..... ..+............+++. +..|+.+.. .+.|..+|..
T Consensus 243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~ 319 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL 319 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESS
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcC
Confidence 3446788999999888777776 67899999875422 2222221223345566663 345555544 4589889866
Q ss_pred CCeEE
Q 003279 796 ENKTL 800 (834)
Q Consensus 796 ~~~~~ 800 (834)
+++.+
T Consensus 320 ~G~~~ 324 (400)
T 3p5b_L 320 TGSDV 324 (400)
T ss_dssp SCCCC
T ss_pred CCCce
Confidence 66433
No 276
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.50 E-value=6.5e-05 Score=83.44 Aligned_cols=228 Identities=9% Similarity=0.032 Sum_probs=148.5
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee
Q 003279 598 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 677 (834)
Q Consensus 598 ~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~ 677 (834)
.|.+..+ ..+|+.+ ....|+.+++..... ..+......+..++|++.+..++++-...+.|..+++........+.
T Consensus 80 ~C~~~~~-~~~l~~~-~~~~I~~i~~~~~~~--~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 80 SCKALGP-EPVLLFA-NRIDIRQVLPHRSEY--TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp CEEECSS-CCEEEEE-CBSCEEEECTTSCCC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred eECCccc-cceeEee-cCccceeeccCCCcE--EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 3444444 2344444 445788888876543 33333445688999998877788777778899999998765444433
Q ss_pred c-CCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEEcCCC
Q 003279 678 C-QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSG 752 (834)
Q Consensus 678 ~-~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--D-g~I~IwDl~s~ 752 (834)
. ......+++.+.++.|+.+.. .+.|.++++........+.........|+++|.+.+|+.+. . +.|..+++...
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~ 235 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 235 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC
Confidence 2 234677899987777776665 57899999876544444444446788999999777666665 4 67888888654
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEE-eccCCCCeEEEEEeCCCCEEEEEecCCcE
Q 003279 753 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKCV 830 (834)
Q Consensus 753 ~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d-g~I~Iwdl~~~~~~~-l~~h~~~V~~lafspdg~~LaSgs~DG~I 830 (834)
. ..............++|+|++..|+.+... +.|..+|+....... +.........|++. .+.++++-...+.|
T Consensus 236 ~---~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V 311 (386)
T 3v65_B 236 G---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSI 311 (386)
T ss_dssp S---CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred C---cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeE
Confidence 2 122222334457899999988888877654 589999987654432 33334567788883 34455554455556
Q ss_pred EEe
Q 003279 831 KIW 833 (834)
Q Consensus 831 ~IW 833 (834)
..+
T Consensus 312 ~~~ 314 (386)
T 3v65_B 312 NSA 314 (386)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 277
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.50 E-value=4.2e-05 Score=79.86 Aligned_cols=199 Identities=11% Similarity=0.150 Sum_probs=132.9
Q ss_pred eeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC--CCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003279 632 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVE 709 (834)
Q Consensus 632 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~--~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~ 709 (834)
.+.+-...+..++|+|+++.++++...++.|...|+. ++.+..+... .....+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4455667899999999988888888889999999998 8888887653 568889999887655554456899999876
Q ss_pred CCe---EEEEEe------CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-------cCCCceEEEE
Q 003279 710 TQV---CRLKLQ------GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-------CTGNKFHSCV 772 (834)
Q Consensus 710 t~~---~~~~l~------~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~-------~~~~~I~sva 772 (834)
... .+.... ........|+|+|.+..|+++. .+...||.+........+..+. .....+..++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 543 222222 1334568999999987777766 3334444443110001111111 1234578999
Q ss_pred EeCCCCEEEEEEcC-CeEEEEECCCCeEE---Eecc-C------CCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 773 FHPTFPSLLVIGCY-ETLELWNMTENKTL---TLSA-H------DKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 773 fspdg~~L~sgs~d-g~I~Iwdl~~~~~~---~l~~-h------~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
++|....+++.+.. ..|.++|.... ++ .+.. . -.....|+|.++|+++++ ++...+++|
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence 99987777666665 48889997755 44 2221 1 125689999999985555 666666654
No 278
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.44 E-value=4.9e-05 Score=82.41 Aligned_cols=194 Identities=13% Similarity=0.215 Sum_probs=135.2
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCC----CC---EEEEEeC---CCeEEEEecCCCCceeee
Q 003279 563 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS----LS---RLATSSA---DRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 563 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspd----g~---~Latgs~---Dg~I~IWDl~s~~~~i~~ 632 (834)
...+++.....+-+.+||+ +++.+..+.. +.++.+..-|+ ++ ++++... +.+|.+|+++.....+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 4456666677789999999 8899888854 56777777663 22 2333333 578999988532222444
Q ss_pred ecc------CC-CCeEEEEE--ccC-CCcEEEEEeCCCcEEEEECC-------CCceeeEeecCCCeeEEEEecCCCEEE
Q 003279 633 FTG------HS-TTVMSLDF--HPS-KEDLLCSCDNNSEIRYWSIN-------NGSCAGVFKCQSGATQMRFQPRLGRIL 695 (834)
Q Consensus 633 ~~~------h~-~~V~sl~f--spd-g~~llasgs~Dg~I~lwDl~-------s~~~i~~~~~~~~i~~l~~sp~g~~ll 695 (834)
+.. .. ..+..+|+ ++. +..++++...+|.+..|++. +.+.++.|...+.+..+.+.+....|+
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY 195 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence 421 12 56777888 664 44567788888999999982 346778888888999999999999999
Q ss_pred EEEcCCeEEEEECC-----CCeEEEEEe-CC-CCCEEEEEE--cCCCC-EEEEEe--CCeEEEEEcC-CCCCceeEEEee
Q 003279 696 AAAIENYISILDVE-----TQVCRLKLQ-GH-KNQVHSVCW--NTSGE-YLASVS--DELVRVWSIG-SGSKGECIHELS 762 (834)
Q Consensus 696 ~~s~dg~I~iwDl~-----t~~~~~~l~-~h-~~~I~sl~~--spdg~-~Lasgs--Dg~I~IwDl~-s~~~~~~i~~~~ 762 (834)
++-++..|..||.+ +++.+..+. ++ ...+..|++ .++++ ||++++ ++.+.|||.. +. +.+..+.
T Consensus 196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~---~~vg~f~ 272 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKN---KYVADFR 272 (355)
T ss_dssp EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTC---CEEEEEE
T ss_pred EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCC---cEEEEEE
Confidence 99999888888866 345565542 22 246888888 45555 666666 7799999996 33 4444443
No 279
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.43 E-value=8.1e-05 Score=83.96 Aligned_cols=235 Identities=10% Similarity=0.122 Sum_probs=143.3
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC-C----eEEEEecCCCC
Q 003279 554 KVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R----TVRVWDTENPD 627 (834)
Q Consensus 554 ~V~sl~fSp-dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D-g----~I~IWDl~s~~ 627 (834)
....++|+| ++..|+++...+.|+.+|.+++....... .......|+|++++++|+++... + .+.+++.....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 457899998 45567666665889999998876554443 45568899999999966666542 1 34444443221
Q ss_pred ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec--CCCeeEEEEecCCCEEEEEEc-CCeEE
Q 003279 628 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAI-ENYIS 704 (834)
Q Consensus 628 ~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~--~~~i~~l~~sp~g~~ll~~s~-dg~I~ 704 (834)
.....+. .......++++|++..++++-..++.|..|+...+........ ......++|+|++++|+++.. .+.|.
T Consensus 217 ~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~ 295 (430)
T 3tc9_A 217 KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL 295 (430)
T ss_dssp CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence 1112222 2344678889995556776766788999999987665333333 234778999999997766665 57899
Q ss_pred EEECCC--CeE--EEEEeCC---------------CCCEE-EEEEc--------CCCCEEEEEe-CCeEEEEEcCCCCCc
Q 003279 705 ILDVET--QVC--RLKLQGH---------------KNQVH-SVCWN--------TSGEYLASVS-DELVRVWSIGSGSKG 755 (834)
Q Consensus 705 iwDl~t--~~~--~~~l~~h---------------~~~I~-sl~~s--------pdg~~Lasgs-Dg~I~IwDl~s~~~~ 755 (834)
.++... +.. +..+.+. -.... .++.. ++|.++++-. .+.|+.++. .+
T Consensus 296 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G--- 371 (430)
T 3tc9_A 296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QG--- 371 (430)
T ss_dssp EEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TS---
T ss_pred EEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CC---
Confidence 987653 221 1122111 01223 45553 3455555544 678888883 33
Q ss_pred eeEEEeecC------------------CCceEEEEEeCCCCEEEEEEc-CCeEEEEECC
Q 003279 756 ECIHELSCT------------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 795 (834)
Q Consensus 756 ~~i~~~~~~------------------~~~I~svafspdg~~L~sgs~-dg~I~Iwdl~ 795 (834)
. +..+... -.....+++++++..|+++.. ++.|+.++++
T Consensus 372 ~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 372 R-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp E-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred c-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 2 2222111 124788999996555665554 4578877754
No 280
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.42 E-value=6.2e-05 Score=85.01 Aligned_cols=233 Identities=14% Similarity=0.111 Sum_probs=139.6
Q ss_pred CeEEEEECCC--CCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC---C-cEEEEECCC
Q 003279 596 WITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---S-EIRYWSINN 669 (834)
Q Consensus 596 ~I~~l~fspd--g~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D---g-~I~lwDl~s 669 (834)
....|+|+|+ ...|+.+...+.|+.+|..++. +..+........+|+|++++. ++++.... . .+..++...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~--v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY--VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE--EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE--EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 4578999984 4456555544889999997654 444444556789999999988 66554321 1 233333322
Q ss_pred Cce-eeEeecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEE-eC-CCCCEEEEEEcCCCCEEEEEe--CCe
Q 003279 670 GSC-AGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKL-QG-HKNQVHSVCWNTSGEYLASVS--DEL 743 (834)
Q Consensus 670 ~~~-i~~~~~~~~i~~l~~sp~g~~ll~~s-~dg~I~iwDl~t~~~~~~l-~~-h~~~I~sl~~spdg~~Lasgs--Dg~ 743 (834)
+.. ...+........++++++.+.|+++. .++.|+.+|..++.....+ .. .......++|+|++++|+.+. .+.
T Consensus 217 ~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 217 GFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred CeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 211 11222334567788999445555554 5678999999877652222 21 222345799999999666666 679
Q ss_pred EEEEEcCC--CCCceeEEEeecC---------------CCceEEEEE---------eCCCCEEEEEEcCCeEEEEECCCC
Q 003279 744 VRVWSIGS--GSKGECIHELSCT---------------GNKFHSCVF---------HPTFPSLLVIGCYETLELWNMTEN 797 (834)
Q Consensus 744 I~IwDl~s--~~~~~~i~~~~~~---------------~~~I~svaf---------spdg~~L~sgs~dg~I~Iwdl~~~ 797 (834)
|+.+++.. +.. .....+... -.....+++ .+++.++++-...+.|+.++. ++
T Consensus 297 I~~~~~d~~~~~~-~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 297 IYRVDYNRETGKL-AVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEBCTTTCCB-CCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEeCCCCCccc-CcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 99988763 211 111111111 123567888 566654444444568999985 55
Q ss_pred eEEEeccC------------------CCCeEEEEEe-CCCCEEEEEecCCcEEEe
Q 003279 798 KTLTLSAH------------------DKLVSSLAAS-TVNGMVASASHDKCVKIW 833 (834)
Q Consensus 798 ~~~~l~~h------------------~~~V~~lafs-pdg~~LaSgs~DG~I~IW 833 (834)
.+..+.+. -.....|+++ +++.++++=...+.|+.+
T Consensus 375 ~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 429 (433)
T 4hw6_A 375 RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKI 429 (433)
T ss_dssp EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 55544322 1247789999 566555555556677754
No 281
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.42 E-value=0.0006 Score=71.07 Aligned_cols=202 Identities=11% Similarity=0.092 Sum_probs=137.3
Q ss_pred EEecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCeEEEEec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEec
Q 003279 546 QLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDT 623 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~L-asgs~Dg~I~IWd~~t~~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 623 (834)
+.+.+-.+.+..++|+|++..| ++...++.|...|.. ++.+..+. .-......|++.+++.++++.-.++.+.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 5677777889999999976654 457778899999988 88887763 22356889999998887777667789999998
Q ss_pred CCCCc--eeeee------ccCCCCeEEEEEccCCCcEEEEEeCCC-cEEEEEC-CCCceeeEee--------cCCCeeEE
Q 003279 624 ENPDY--SLRTF------TGHSTTVMSLDFHPSKEDLLCSCDNNS-EIRYWSI-NNGSCAGVFK--------CQSGATQM 685 (834)
Q Consensus 624 ~s~~~--~i~~~------~~h~~~V~sl~fspdg~~llasgs~Dg-~I~lwDl-~s~~~i~~~~--------~~~~i~~l 685 (834)
..... .+... ...+.....|+|+|.+..++++...+. .|+.|+- .....+..+. .-..+..+
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 76542 11221 123455789999999887887666554 5555551 1111122221 12357899
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCC---------CCEEEEEEcCCCCEEEEEeCCeEEEEEc
Q 003279 686 RFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHK---------NQVHSVCWNTSGEYLASVSDELVRVWSI 749 (834)
Q Consensus 686 ~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~h~---------~~I~sl~~spdg~~LasgsDg~I~IwDl 749 (834)
+++|..+.+++.+. ...|.++|.... .+..+.-.. .....|+|+++|++++++-.+.+++|.-
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTP 251 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence 99998887777766 478889997744 444433221 2568999999998666654666776653
No 282
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.41 E-value=2.5e-05 Score=94.52 Aligned_cols=192 Identities=10% Similarity=0.031 Sum_probs=115.5
Q ss_pred CeEEEEEC-CCCCEEEEEeC-CC----eEEEEecCCC-CceeeeeccCCCCeEEEEEccCCCcEEEEEeCC----CcEEE
Q 003279 596 WITDVRFS-PSLSRLATSSA-DR----TVRVWDTENP-DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRY 664 (834)
Q Consensus 596 ~I~~l~fs-pdg~~Latgs~-Dg----~I~IWDl~s~-~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D----g~I~l 664 (834)
.+...+|+ |||++||.+.. +| .|+++|+.++ ......+. .....++|+||++.++++...+ ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 99998886543 22 5999999987 52111111 1235688999998888776532 36888
Q ss_pred EECCCCce--eeEeec--CCCeeEEEEecCCCEEEEEEcC---CeEEEEECCCC--eE-EEEE-eCCCCCEEEEEEcCCC
Q 003279 665 WSINNGSC--AGVFKC--QSGATQMRFQPRLGRILAAAIE---NYISILDVETQ--VC-RLKL-QGHKNQVHSVCWNTSG 733 (834)
Q Consensus 665 wDl~s~~~--i~~~~~--~~~i~~l~~sp~g~~ll~~s~d---g~I~iwDl~t~--~~-~~~l-~~h~~~I~sl~~spdg 733 (834)
+++.++.. ...+.. ......+.|+|++++|+....+ ..|+++|+.++ .. +..+ ........++.|+.++
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~ 331 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS 331 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence 99987642 233322 2345678999999998887743 47899999875 22 1233 3344555666665444
Q ss_pred CEEEEEe-C--C--eEEEEEcCCCCCceeEEEeecCCC--ceEEEEEeCCCCEEEE-EEcCC--eEEEEEC
Q 003279 734 EYLASVS-D--E--LVRVWSIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLLV-IGCYE--TLELWNM 794 (834)
Q Consensus 734 ~~Lasgs-D--g--~I~IwDl~s~~~~~~i~~~~~~~~--~I~svafspdg~~L~s-gs~dg--~I~Iwdl 794 (834)
.+++.+. + + .|.++|+.+......+ +..+.. .+..+.+. +..|++ ...++ .|+++++
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~--li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHV--LVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTSTTCCCCE--EECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEEC
T ss_pred EEEEEeCCCCCCCcEEEEEcCCCcccceee--EECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEec
Confidence 4444444 4 2 6777787642111110 222222 34444444 455544 45555 5777786
No 283
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.40 E-value=0.00032 Score=78.19 Aligned_cols=219 Identities=9% Similarity=0.020 Sum_probs=143.6
Q ss_pred EEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC----ceeeEee-cCCCe
Q 003279 608 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK-CQSGA 682 (834)
Q Consensus 608 ~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~----~~i~~~~-~~~~i 682 (834)
+|+.+ ....|+..++..... ..+......+..|+|++.+..++++-...+.|+.+++... .....+. .....
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~--~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred eeEEe-ccceeEEEccCCcce--eEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 44444 346789999886543 3333445678999999987777777777889999998752 2222332 23457
Q ss_pred eEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCceeE
Q 003279 683 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECI 758 (834)
Q Consensus 683 ~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~~~~~i 758 (834)
..+++.+.++.|+.+.. .+.|.++|++.......+.........|+++|.+.+|+.+. .+.|...++.... ..
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~---~~ 238 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IY 238 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS---CE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc---cE
Confidence 88999986677766665 58999999987655555554455688999999776666655 3678888887542 22
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEecc---CCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 759 HELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 759 ~~~~~~~~~I~svafspdg~~L~sgs~-dg~I~Iwdl~~~~~~~l~~---h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
..+...-.....+++++++..|+.+.. .+.|..+|+.......+.. ......+|++.. +.++++-...+.|..+
T Consensus 239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~-~~lywtd~~~~~V~~~ 316 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSA 316 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEET-TEEEEEESSSCSEEEE
T ss_pred EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeC-CEEEEecCCCCeEEEE
Confidence 222233456789999998888888865 4589999997765443322 234566777742 3444454455556544
No 284
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.39 E-value=0.00022 Score=77.04 Aligned_cols=216 Identities=9% Similarity=0.016 Sum_probs=139.3
Q ss_pred CCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCcee-eEee-cCCCeeEEEEecCC
Q 003279 614 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFK-CQSGATQMRFQPRL 691 (834)
Q Consensus 614 ~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i-~~~~-~~~~i~~l~~sp~g 691 (834)
....|+.++++...............+..++|++.+..++++-...+.|..+++..+... ..+. .-.....+++.+.+
T Consensus 11 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 11 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp CEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred ccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence 356799999987542222222223457789999877778777777889999999866422 2222 22456789999877
Q ss_pred CEEEEEEc-CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003279 692 GRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNK 767 (834)
Q Consensus 692 ~~ll~~s~-dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 767 (834)
+.|+.+.. .+.|.++++........+.........++++|.+.+|+.+. .+.|..+++.... ........-..
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~---~~~~~~~~l~~ 167 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS---RFIIINSEIYW 167 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS---CEEEECSSCSC
T ss_pred CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC---eEEEEECCCCC
Confidence 77766654 57999999876543333334456678999999766666555 3588888876432 11112223455
Q ss_pred eEEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEec-cCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 768 FHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 768 I~svafspdg~~L~sgs~-dg~I~Iwdl~~~~~~~l~-~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
...++|++++..|+.+.. .+.|..+|+.......+. ........+++.. +.++++-...+.|..+
T Consensus 168 Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~ 234 (318)
T 3sov_A 168 PNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILAC 234 (318)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred ccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEE
Confidence 789999998888887765 458999999765443332 2445667787753 3344444444555543
No 285
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.35 E-value=0.0004 Score=84.11 Aligned_cols=230 Identities=8% Similarity=-0.033 Sum_probs=149.8
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEecCCCC---ceeeeeccCCCCeE
Q 003279 566 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPD---YSLRTFTGHSTTVM 641 (834)
Q Consensus 566 ~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl~s~~---~~i~~~~~h~~~V~ 641 (834)
+|+.+. ...|+..++........+. ....+..|+|.+....| ++-...+.|+.+++.... .....+........
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred cccccc-ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 444443 4578888887665554444 44567899999855544 455556789999987531 11223332445677
Q ss_pred EEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcC--CeEEEEECCCCeEEEEEe
Q 003279 642 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE--NYISILDVETQVCRLKLQ 718 (834)
Q Consensus 642 sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~d--g~I~iwDl~t~~~~~~l~ 718 (834)
.|++.+.+..|+++-...+.|.+.++........+. .......|+++|.+++|+.+... +.|.+.++........+.
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~ 554 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 554 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence 899998888888888888999999998655444443 23458899999988888887753 689999997655544444
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECC
Q 003279 719 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMT 795 (834)
Q Consensus 719 ~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d-g~I~Iwdl~ 795 (834)
..-.....|++++.+..|+.+. .+.|.++++..... ..+............+++. +.+|+.+... +.|...|..
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~ 631 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL 631 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCC
Confidence 4446789999998777777766 66899999875422 2222111122334556654 3466666654 588888876
Q ss_pred CCeEE
Q 003279 796 ENKTL 800 (834)
Q Consensus 796 ~~~~~ 800 (834)
+++.+
T Consensus 632 tG~~~ 636 (791)
T 3m0c_C 632 TGSDV 636 (791)
T ss_dssp TCCCC
T ss_pred CCcce
Confidence 66433
No 286
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.29 E-value=0.00021 Score=80.56 Aligned_cols=235 Identities=10% Similarity=0.060 Sum_probs=141.3
Q ss_pred CeEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC---C-eEEEEecCCCC
Q 003279 554 KVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---R-TVRVWDTENPD 627 (834)
Q Consensus 554 ~V~sl~fSpd--g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g-~I~IWDl~s~~ 627 (834)
.-.+++|+|+ +..|+.+...+.|+.+|..++...... .......+|+|+++++++++.... . .+..++.....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 4568999985 445666655589999999887766554 345568999999999944444321 1 23334433221
Q ss_pred ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceee-EeecC--CCeeEEEEecCCCEEEEEEc-CCeE
Q 003279 628 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFKCQ--SGATQMRFQPRLGRILAAAI-ENYI 703 (834)
Q Consensus 628 ~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~-~~~~~--~~i~~l~~sp~g~~ll~~s~-dg~I 703 (834)
.....+. .......++++|++..++++-..++.|+.+|..++.... .+... .....++|+|++++|+++.. .+.|
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I 297 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI 297 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence 1011111 234456788999545566666667889999998776632 22221 22346999999997777665 5789
Q ss_pred EEEECC--CCeE--EEEEeCC---------------CCCEEEEEE---------cCCCCEEEEEe-CCeEEEEEcCCCCC
Q 003279 704 SILDVE--TQVC--RLKLQGH---------------KNQVHSVCW---------NTSGEYLASVS-DELVRVWSIGSGSK 754 (834)
Q Consensus 704 ~iwDl~--t~~~--~~~l~~h---------------~~~I~sl~~---------spdg~~Lasgs-Dg~I~IwDl~s~~~ 754 (834)
..+|.. ++.. ...+.+. -.....+++ .++|.++++-. .+.|++++. ++
T Consensus 298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G-- 374 (433)
T 4hw6_A 298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG-- 374 (433)
T ss_dssp EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS--
T ss_pred EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC--
Confidence 998865 2311 1112111 124667999 67777666655 678999884 33
Q ss_pred ceeEEEeecC------------------CCceEEEEEeCCCCEEEEEEc-CCeEEEEECC
Q 003279 755 GECIHELSCT------------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 795 (834)
Q Consensus 755 ~~~i~~~~~~------------------~~~I~svafspdg~~L~sgs~-dg~I~Iwdl~ 795 (834)
. +..+.+. -.....++++|....|+++.. ++.|+.++++
T Consensus 375 -~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 375 -R-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp -E-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -C-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 2 2222211 123677888843334555544 4578777654
No 287
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.21 E-value=0.00035 Score=79.59 Aligned_cols=233 Identities=12% Similarity=0.082 Sum_probs=138.2
Q ss_pred CeEEEEECC-CCCEEEEEeC-CCeEEEEecCCCCceeeeeccC----CCCeEEEEE-------ccCCCcEEEEEeCCC--
Q 003279 596 WITDVRFSP-SLSRLATSSA-DRTVRVWDTENPDYSLRTFTGH----STTVMSLDF-------HPSKEDLLCSCDNNS-- 660 (834)
Q Consensus 596 ~I~~l~fsp-dg~~Latgs~-Dg~I~IWDl~s~~~~i~~~~~h----~~~V~sl~f-------spdg~~llasgs~Dg-- 660 (834)
....|+|+| +...|+.+.. .+.|++.|+..+.. ..+..- ......|+| ++++..++++...++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v--~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRML--SSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEE--EEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEE--EEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence 467899998 3444555444 46788888886543 333221 235889999 999887776655442
Q ss_pred ----cEEEEECCC-Ccee-----eEeecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECC-------CCeE---------
Q 003279 661 ----EIRYWSINN-GSCA-----GVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVE-------TQVC--------- 713 (834)
Q Consensus 661 ----~I~lwDl~s-~~~i-----~~~~~~~~i~~l~~sp~g~~ll~~s-~dg~I~iwDl~-------t~~~--------- 713 (834)
.|.+++... +... ..+........++++|+++.|+++. .++.|+.||+. ++..
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred ccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 366776443 2221 2222234566788999766666665 46789999987 4442
Q ss_pred -----EEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcee--EEEeecC---------------CCceE
Q 003279 714 -----RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGEC--IHELSCT---------------GNKFH 769 (834)
Q Consensus 714 -----~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~--i~~~~~~---------------~~~I~ 769 (834)
+..+ +.......|+|+|+|++|+.+. ...|+.++...... .. ...+.+. -....
T Consensus 298 g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~-~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~ 375 (496)
T 3kya_A 298 NTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK-EFITPYNFVGGYKQSGYRDDVGTEARMNNPC 375 (496)
T ss_dssp TTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT-EECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred cccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc-eecccEEecCCCCCCcccCCcccccccCCCe
Confidence 2222 2334568999999999766665 66898876643211 11 0111111 01234
Q ss_pred -EEEEe-------CCCCEEEEEEcCCeEEEEECCCCeEEEeccC------------------------CCCeEEEEEeCC
Q 003279 770 -SCVFH-------PTFPSLLVIGCYETLELWNMTENKTLTLSAH------------------------DKLVSSLAASTV 817 (834)
Q Consensus 770 -svafs-------pdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h------------------------~~~V~~lafspd 817 (834)
.++.. .++.++++=...+.|+.++ .++.+.++.+. -.....|+++++
T Consensus 376 ~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~ 454 (496)
T 3kya_A 376 QGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV 454 (496)
T ss_dssp EEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT
T ss_pred EEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC
Confidence 45554 4455444444556999999 45665554322 123678999997
Q ss_pred -CCEEEEEecCCcEEEe
Q 003279 818 -NGMVASASHDKCVKIW 833 (834)
Q Consensus 818 -g~~LaSgs~DG~I~IW 833 (834)
+.++++=.....|+.+
T Consensus 455 ~g~lyVaD~~N~rIrki 471 (496)
T 3kya_A 455 KEMFYVHDQVGHTIRTI 471 (496)
T ss_dssp TTEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCCCCEEEEE
Confidence 6555555556677765
No 288
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.19 E-value=5.1e-05 Score=90.35 Aligned_cols=228 Identities=7% Similarity=-0.032 Sum_probs=130.4
Q ss_pred EEEECC-CCCEEEEEeCCC-----------eEEEEecCCCCceee-ee-ccCCCCeEEEEEccCCCcEEEEEe-CCCcEE
Q 003279 599 DVRFSP-SLSRLATSSADR-----------TVRVWDTENPDYSLR-TF-TGHSTTVMSLDFHPSKEDLLCSCD-NNSEIR 663 (834)
Q Consensus 599 ~l~fsp-dg~~Latgs~Dg-----------~I~IWDl~s~~~~i~-~~-~~h~~~V~sl~fspdg~~llasgs-~Dg~I~ 663 (834)
.+++.+ ++++++.|+.+. .+.+||+.+...... .. ..+.....++++..++. +++.|+ .+..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC-EEEeCCCCCCceE
Confidence 566667 888888887643 688999988764322 12 12333344567777766 555666 456899
Q ss_pred EEECCCCceeeEeec--CCCeeEEEEecCCCEEEEEE-cC-----CeEEEEECCCCeEEEEE----eCCCCCEEEEEEcC
Q 003279 664 YWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAA-IE-----NYISILDVETQVCRLKL----QGHKNQVHSVCWNT 731 (834)
Q Consensus 664 lwDl~s~~~i~~~~~--~~~i~~l~~sp~g~~ll~~s-~d-----g~I~iwDl~t~~~~~~l----~~h~~~I~sl~~sp 731 (834)
+||..+++....-.. ...-.++++.++++.+++|+ .+ ..+.+||..+.+-...- ......-....+..
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 999987765443222 22234566667889888888 34 57999999887543320 00000000011223
Q ss_pred CCCEEEEEe----------CCeEEEEEcCCCCCceeEEEeec------CCCceEEEEEeC-CCCEEEEEEcCC-------
Q 003279 732 SGEYLASVS----------DELVRVWSIGSGSKGECIHELSC------TGNKFHSCVFHP-TFPSLLVIGCYE------- 787 (834)
Q Consensus 732 dg~~Lasgs----------Dg~I~IwDl~s~~~~~~i~~~~~------~~~~I~svafsp-dg~~L~sgs~dg------- 787 (834)
++..++.++ ...+.+||..+..-......... ....-.++.|.. +++.+++|+.++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~ 428 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence 344434333 34678899887632111111111 011224445544 566666666432
Q ss_pred ----eEEEEECCCCeEEEec---cCCCC-eEEEEEeCCCCEEEEEecC
Q 003279 788 ----TLELWNMTENKTLTLS---AHDKL-VSSLAASTVNGMVASASHD 827 (834)
Q Consensus 788 ----~I~Iwdl~~~~~~~l~---~h~~~-V~~lafspdg~~LaSgs~D 827 (834)
.|.+||..+.....+. .+... -.+++..|++++++.|+.+
T Consensus 429 ~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 429 TNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp CCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred CcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence 6888998887766443 12222 3445667899999999865
No 289
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.16 E-value=0.0015 Score=79.06 Aligned_cols=216 Identities=9% Similarity=0.028 Sum_probs=140.1
Q ss_pred EEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC----ceeeEee-cCCCe
Q 003279 608 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK-CQSGA 682 (834)
Q Consensus 608 ~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~----~~i~~~~-~~~~i 682 (834)
+|+.+ ....|+..++..... ..+......+..|+|++....++++-...+.|+.+++... .....+. .....
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~--~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCC--EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred ccccc-cccceeEeeccCCcc--eeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 34333 455688888876543 3333345678899999877778777777789999998753 2223332 23457
Q ss_pred eEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEEcCCCCCceeE
Q 003279 683 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECI 758 (834)
Q Consensus 683 ~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--D-g~I~IwDl~s~~~~~~i 758 (834)
..|++.+.++.|+++.. .+.|.++++........+.........|+++|.+.+|+.+. . +.|.+.++... ...
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~---~~~ 550 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIY 550 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEE
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC---ceE
Confidence 78999988877777765 57999999987655444444556689999999866666655 3 67888888754 222
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEecc---CCCCeEEEEEeCCCCEEEEEe-cCCcEE
Q 003279 759 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASAS-HDKCVK 831 (834)
Q Consensus 759 ~~~~~~~~~I~svafspdg~~L~sgs~d-g~I~Iwdl~~~~~~~l~~---h~~~V~~lafspdg~~LaSgs-~DG~I~ 831 (834)
..+.........|++++.+..|+++... +.|..+++.......+.. .-....+|++.. ..|+.+. ..+.|.
T Consensus 551 ~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~--~~lYwtD~~~~~I~ 626 (791)
T 3m0c_C 551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIF 626 (791)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEE
T ss_pred EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC--CEEEEEECCCCEEE
Confidence 2233334678899999888888887654 489999997765543332 223455666643 3444443 334443
No 290
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.16 E-value=0.00055 Score=78.02 Aligned_cols=240 Identities=14% Similarity=0.128 Sum_probs=144.7
Q ss_pred eEEEEEcC-CCCEEEEEe-CCCcEEEEeCCCCeEEEEeccC---CCCeEEEEE-------CCCCCEEEEEeCCC------
Q 003279 555 VESCHFSP-DGKLLATGG-HDKKAVLWCTESFTVKSTLEEH---TQWITDVRF-------SPSLSRLATSSADR------ 616 (834)
Q Consensus 555 V~sl~fSp-dg~~Lasgs-~Dg~I~IWd~~t~~~~~~l~~h---~~~I~~l~f-------spdg~~Latgs~Dg------ 616 (834)
-..|+|+| ++..|+++. ..+.|++.|.+++.....+... ......|+| ++++..|+++...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 56899998 344455444 3467889998887776555432 235889999 99999777766554
Q ss_pred -eEEEEecCC-CCce----eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC-------CCce-----------
Q 003279 617 -TVRVWDTEN-PDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-------NGSC----------- 672 (834)
Q Consensus 617 -~I~IWDl~s-~~~~----i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~-------s~~~----------- 672 (834)
.|.+++... +... ...+.. -.....++++|++..|+++...++.|..+|+. ++..
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred ceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 266665443 1221 012221 12456788999777788888888899999997 5543
Q ss_pred e-eEeec--CCCeeEEEEecCCCEEEEEEc-CCeEEEEEC--CCCeE--EEEEeCC---C------------CCEE-EEE
Q 003279 673 A-GVFKC--QSGATQMRFQPRLGRILAAAI-ENYISILDV--ETQVC--RLKLQGH---K------------NQVH-SVC 728 (834)
Q Consensus 673 i-~~~~~--~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl--~t~~~--~~~l~~h---~------------~~I~-sl~ 728 (834)
. ..+.. ......++|+|+++.|+++.. .+.|+.+|. ..+.. ...+-+. . .... .++
T Consensus 300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~ 379 (496)
T 3kya_A 300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVF 379 (496)
T ss_dssp EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEE
T ss_pred cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEE
Confidence 1 12222 234678999999997666665 578888654 44332 0122111 1 1234 455
Q ss_pred Ec-------CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC------------------------CCceEEEEEeCC
Q 003279 729 WN-------TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT------------------------GNKFHSCVFHPT 776 (834)
Q Consensus 729 ~s-------pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~------------------------~~~I~svafspd 776 (834)
.. .++.++++-. ...|+.++. ++ .+.++.+. -.....++++++
T Consensus 380 vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G----~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~ 454 (496)
T 3kya_A 380 VKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG----IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV 454 (496)
T ss_dssp EECTTCCSSCCEEEEEEEGGGTEEEEECT-TC----BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT
T ss_pred EccccccccCCCeEEEEECCCCEEEEEeC-CC----CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC
Confidence 54 4556555555 779999983 33 22233221 123567888887
Q ss_pred CCEEEEEEc-CCeEEEEECCCCeEE
Q 003279 777 FPSLLVIGC-YETLELWNMTENKTL 800 (834)
Q Consensus 777 g~~L~sgs~-dg~I~Iwdl~~~~~~ 800 (834)
...|+++.. +..|+.++++.....
T Consensus 455 ~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 455 KEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp TTEEEEEETTTTEEEEEEECCCC--
T ss_pred CCEEEEEeCCCCEEEEEECCCCccc
Confidence 334555554 458888887765543
No 291
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.14 E-value=0.0018 Score=76.54 Aligned_cols=219 Identities=10% Similarity=0.007 Sum_probs=145.5
Q ss_pred EEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC-CCeeEEE
Q 003279 608 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMR 686 (834)
Q Consensus 608 ~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~-~~i~~l~ 686 (834)
+|+.+ ....|+..+++............-..+..|+|++.+..++++-..++.|..+++........+... .....++
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 44444 566899999986543222222233568899999988888878777899999999865444444432 3577899
Q ss_pred EecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCceeEEEee
Q 003279 687 FQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELS 762 (834)
Q Consensus 687 ~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~ 762 (834)
+.+.++.|+.+.. .+.|.+.++........+...-.....|+++|...+|+.+. .+.|...++..... .. +.
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~---l~ 162 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TT---LV 162 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EE---EE
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EE---EE
Confidence 9988787777765 57899999976543333334445678999999655565555 45788888765432 22 22
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 763 CTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 763 ~~~~~I~svafspdg~~L~sgs~d-g~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
........+++++++..|+.+... +.|..+|+.......+........+|++.. +.++++-...+.|..
T Consensus 163 ~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~ 232 (628)
T 4a0p_A 163 PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIER 232 (628)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEE
Confidence 245678899999988888887664 589999997754443334445567788765 334444334555554
No 292
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.04 E-value=0.0012 Score=78.03 Aligned_cols=222 Identities=7% Similarity=-0.011 Sum_probs=138.0
Q ss_pred CCcEEEEeCCCCe-EEEEeccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCC
Q 003279 573 DKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 650 (834)
Q Consensus 573 Dg~I~IWd~~t~~-~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~ 650 (834)
...|++.|+.... ....+...-..+..++|++.+..|+.+. ..+.|..++++........+...-.....+++.+.+.
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~ 96 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 96 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC
Confidence 4678888887643 2222233445678999998766666554 4678999998754321223333335788999999878
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEe-ecCCCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEEeCCCCCEEEE
Q 003279 651 DLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGHKNQVHSV 727 (834)
Q Consensus 651 ~llasgs~Dg~I~lwDl~s~~~i~~~-~~~~~i~~l~~sp~g~~ll~~s~--dg~I~iwDl~t~~~~~~l~~h~~~I~sl 727 (834)
.++++-...+.|.+.++........+ ..-.....++++|.+++|+.+.. .+.|...++............-.....|
T Consensus 97 ~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Gl 176 (619)
T 3s94_A 97 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 176 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEE
Confidence 78878777899999999865433333 22345778999998888888775 3678888877543333333345578899
Q ss_pred EEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCeE
Q 003279 728 CWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKT 799 (834)
Q Consensus 728 ~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~-dg~I~Iwdl~~~~~ 799 (834)
++++++..|+.+. .+.|..+|+........+ .........+++..+ .|+.+.. .+.|...|..+++.
T Consensus 177 ald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~---~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 177 TLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV---KGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp EEETTTTEEEEEETTTCCEEEESSSCCEEC------------CCCEEESSS--EEEEECTTTCSEEEEESSSCCC
T ss_pred EEEccCCEEEEEeCCCCeEEEecCCCCccEEEE---eCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcc
Confidence 9999877777766 668999988754221111 111222345666555 5665554 45898889877653
No 293
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.04 E-value=0.0055 Score=72.33 Aligned_cols=224 Identities=8% Similarity=-0.021 Sum_probs=150.9
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEec-cCCCCeEEEEECCCCCEEEE-EeCCCeEEEEecCCCCceeeeeccCCCCeEEE
Q 003279 566 LLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLAT-SSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 643 (834)
Q Consensus 566 ~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~I~~l~fspdg~~Lat-gs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl 643 (834)
+|+.+ ....|+..++++......+. ..-..+..|+|++.+..|+. -..++.|+.++++.... ...+.........|
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVEFGLDYPEGM 85 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEeCCCCCcceE
Confidence 55554 35789999998765443332 22346789999986655554 45678999999875432 22233223467789
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCCCceeeEe-ecCCCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEEeCC
Q 003279 644 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGH 720 (834)
Q Consensus 644 ~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~-~~~~~i~~l~~sp~g~~ll~~s~--dg~I~iwDl~t~~~~~~l~~h 720 (834)
++.+.+..++++-...+.|.+.++........+ ..-.....++++|..+.|+.+.. .+.|...++........+. .
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~ 164 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-N 164 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-S
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-C
Confidence 998887878877777889999999755433333 22355789999998888888774 4688888887554333333 4
Q ss_pred CCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCC
Q 003279 721 KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTEN 797 (834)
Q Consensus 721 ~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~-dg~I~Iwdl~~~ 797 (834)
-.....|++++++..|+.+. .+.|..+|+..... +. +.........+++.. ..|+.+.. .+.|...|..++
T Consensus 165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v---~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EV---IADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE---EEECCSCEEEEEEET--TEEEEEETTTTEEEEEETTTC
T ss_pred CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EE---eeccCCCceEEEEEC--CEEEEecCCCCEEEEEECCCC
Confidence 56788999999887777776 67999999976532 22 223334456777765 35666665 568999997665
Q ss_pred e
Q 003279 798 K 798 (834)
Q Consensus 798 ~ 798 (834)
+
T Consensus 239 ~ 239 (628)
T 4a0p_A 239 Q 239 (628)
T ss_dssp C
T ss_pred C
Confidence 4
No 294
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.03 E-value=0.0009 Score=73.19 Aligned_cols=225 Identities=8% Similarity=0.065 Sum_probs=122.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE--EEEec---cCCCCeEEEEECCC---CCEEEEEeC-C-----CeE
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLE---EHTQWITDVRFSPS---LSRLATSSA-D-----RTV 618 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~--~~~l~---~h~~~I~~l~fspd---g~~Latgs~-D-----g~I 618 (834)
..-..++|.|||++++ +..+|.|++++ +++. +..+. ........|+|+|+ +..|+++.. . ..|
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 3467899999998554 55679999998 4432 22221 22356889999998 555554433 2 678
Q ss_pred EEEecCCCCc-----eeeeec---cCCCCeEEEEEccCCCcEEEEEeC-------------CCcEEEEECCCC-------
Q 003279 619 RVWDTENPDY-----SLRTFT---GHSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNG------- 670 (834)
Q Consensus 619 ~IWDl~s~~~-----~i~~~~---~h~~~V~sl~fspdg~~llasgs~-------------Dg~I~lwDl~s~------- 670 (834)
..|+...... .+..+. ........|+|.|+|. ++++.+. .|.|..++....
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 8888774321 111122 1112346899999985 4444332 256666666530
Q ss_pred -----ceeeEee-cCCCeeEEEEecCCCEEEEEEcC-Ce--------EEEEECCC----------------CeEEEEEeC
Q 003279 671 -----SCAGVFK-CQSGATQMRFQPRLGRILAAAIE-NY--------ISILDVET----------------QVCRLKLQG 719 (834)
Q Consensus 671 -----~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~d-g~--------I~iwDl~t----------------~~~~~~l~~ 719 (834)
.....+. .......++|+|+.+.|+++... +. |.+..... ..++..+.
T Consensus 187 ~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~- 265 (352)
T 2ism_A 187 LGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP- 265 (352)
T ss_dssp TTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-
T ss_pred cCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-
Confidence 1111121 12336678999954555555443 22 33332111 01222222
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc---eeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003279 720 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG---ECIHELSCTGNKFHSCVFHPTFPSLLVI 783 (834)
Q Consensus 720 h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~---~~i~~~~~~~~~I~svafspdg~~L~sg 783 (834)
+......++| .+|.++++.. .+.|...++...... .....+......+..+++.|||..+++.
T Consensus 266 ~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 266 QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence 2234567777 4566555544 668888887654310 0112222234678899999999755444
No 295
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.99 E-value=0.0066 Score=71.54 Aligned_cols=276 Identities=8% Similarity=-0.015 Sum_probs=160.4
Q ss_pred CCeEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC--CCeEEEEecCCCCce
Q 003279 553 SKVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYS 629 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasg-s~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~--Dg~I~IWDl~s~~~~ 629 (834)
.....+++.+.+..|+.+ ...+.|.+.+++.......+...-.....|++.|.+.+|+.+.. .+.|...+++....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~- 162 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR- 162 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-
Confidence 468899999966655554 45689999998764433333344456789999997666666554 35677777764332
Q ss_pred eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEc-CCeEEEEE
Q 003279 630 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI-ENYISILD 707 (834)
Q Consensus 630 i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwD 707 (834)
.......-.....|++++++..++++-...+.|..+|+.......... .......+++..+ .++.+.. .+.|...|
T Consensus 163 ~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d 240 (619)
T 3s94_A 163 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACN 240 (619)
T ss_dssp EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEE
T ss_pred EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEE
Confidence 222223345678999999878777776777889999997544333222 1122345566544 5665554 57888888
Q ss_pred CCCCeEEEEEeC-----------CC--------------CCEEEEEE-----------cC-------CC--------CEE
Q 003279 708 VETQVCRLKLQG-----------HK--------------NQVHSVCW-----------NT-------SG--------EYL 736 (834)
Q Consensus 708 l~t~~~~~~l~~-----------h~--------------~~I~sl~~-----------sp-------dg--------~~L 736 (834)
..+++....+.. |. +....+|+ .| |+ .+|
T Consensus 241 ~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~L 320 (619)
T 3s94_A 241 KYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELL 320 (619)
T ss_dssp SSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEE
T ss_pred CCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEE
Confidence 876643322211 10 00111111 11 11 245
Q ss_pred EEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEec-cCCCCeEEEEE
Q 003279 737 ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLTLS-AHDKLVSSLAA 814 (834)
Q Consensus 737 asgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~-dg~I~Iwdl~~~~~~~l~-~h~~~V~~laf 814 (834)
+.+..+.|+..++...........+ ..-..+..++|++.+..|+.+.. .+.|+.+++.......+. ..-..+..+++
T Consensus 321 l~~~~~~i~~i~l~~~~~~~~~~~~-~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAv 399 (619)
T 3s94_A 321 LLARRTDLRRISLDTPDFTDIVLQL-EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAV 399 (619)
T ss_dssp EEEESSCEEEEESSSTTCCCEECCC-SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred EEEcccceEEEecCCCccceeEEec-cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEE
Confidence 5555566777777655321111111 12345778999997777777765 568999998875443332 33356778999
Q ss_pred eCCCCEEEEE-ecCCcEEE
Q 003279 815 STVNGMVASA-SHDKCVKI 832 (834)
Q Consensus 815 spdg~~LaSg-s~DG~I~I 832 (834)
...++.|+.+ +..+.|.+
T Consensus 400 D~~~~~lY~tD~~~~~I~v 418 (619)
T 3s94_A 400 DWVARNLYWTDTGTDRIEV 418 (619)
T ss_dssp ETTTTEEEEEETTTTEEEE
T ss_pred ecccCcEEEEeCCCCcEEE
Confidence 8755544443 34455544
No 296
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.97 E-value=1.5e-05 Score=95.62 Aligned_cols=226 Identities=8% Similarity=-0.022 Sum_probs=137.3
Q ss_pred CCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEecCCC---CceeeeeccCCCCeEEEEEccC
Q 003279 573 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFHPS 648 (834)
Q Consensus 573 Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~s~---~~~i~~~~~h~~~V~sl~fspd 648 (834)
.+.|++.++.+......+.. ...+..|+|.+.+..|+.+. ..+.|+.+++... ......+.........|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 46788888887665544433 34567899998766666554 4678999998751 1111222212234567888876
Q ss_pred CCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcC--CeEEEEECCCCeEEEEEeCCCCCEE
Q 003279 649 KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE--NYISILDVETQVCRLKLQGHKNQVH 725 (834)
Q Consensus 649 g~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~d--g~I~iwDl~t~~~~~~l~~h~~~I~ 725 (834)
+..|+++-...+.|.++++........+.. ......++++|.+++|+.+... +.|.++++........+...-....
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~Pn 543 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 543 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCC
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCcc
Confidence 666776666678999999886554443332 2456788999987777766542 6888888764322222222234567
Q ss_pred EEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEe
Q 003279 726 SVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTL 802 (834)
Q Consensus 726 sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs-~dg~I~Iwdl~~~~~~~l 802 (834)
.|+|++++..|+.+. .+.|.++++..... ..+............+++..+ .|+++. ..+.|..++..+++.+..
T Consensus 544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~~ 620 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNL 620 (699)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEEC
T ss_pred EEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceEE
Confidence 899999866665555 66899999875321 222111111223345555544 455554 456899999888776643
No 297
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.97 E-value=0.0014 Score=70.71 Aligned_cols=231 Identities=11% Similarity=0.036 Sum_probs=130.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec---cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC-CC
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-PD 627 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~---~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s-~~ 627 (834)
...+.+|.|++ +..++ ++.++.|+. ..+.++.-..+. .+...+..|.+.+++..++++ .++.|. .... +.
T Consensus 79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~--~S~DgG~ 152 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIY--RTKDSGK 152 (327)
T ss_dssp CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEE--EESSTTS
T ss_pred CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEE--EEcCCCC
Confidence 34588899986 44444 455665544 333333333322 234567888887776666555 456443 2222 22
Q ss_pred ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEE-EEC--CCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEE
Q 003279 628 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY-WSI--NNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 704 (834)
Q Consensus 628 ~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~l-wDl--~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~ 704 (834)
.-......+...+..+++.+++. +++++. +|.|.. +|- .+.+.+. ......+..+.+.+++. +++++.+|.++
T Consensus 153 tW~~~~~~~~~~~~~~~~~~~~~-~~~~g~-~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~-~~~~~~~G~~~ 228 (327)
T 2xbg_A 153 NWQALVQEAIGVMRNLNRSPSGE-YVAVSS-RGSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDGR-LWMIVNGGKIA 228 (327)
T ss_dssp SEEEEECSCCCCEEEEEECTTSC-EEEEET-TSSEEEEECTTCSSCEEEE-CCSSSCEEEEEECTTSC-EEEEETTTEEE
T ss_pred CCEEeecCCCcceEEEEEcCCCc-EEEEEC-CCcEEEEeCCCCCceeECC-CCCCCccceeEECCCCC-EEEEeCCceEE
Confidence 11222234556789999998865 554544 555444 332 2222221 12345678888888865 55666778877
Q ss_pred EEECCCCeEEEEEeC----CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 003279 705 ILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 780 (834)
Q Consensus 705 iwDl~t~~~~~~l~~----h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L 780 (834)
+.+...++.-..+.. +...+.++.+.+++.+++++.++.| ++..+.+.....+.........+.++.|.+++ .+
T Consensus 229 ~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~ 306 (327)
T 2xbg_A 229 FSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QG 306 (327)
T ss_dssp EEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EE
T ss_pred EecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ce
Confidence 765333433322221 2235889999998888888888877 45555553222221111123567888887554 47
Q ss_pred EEEEcCCeEEEEEC
Q 003279 781 LVIGCYETLELWNM 794 (834)
Q Consensus 781 ~sgs~dg~I~Iwdl 794 (834)
++++.+|.|..++-
T Consensus 307 ~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 307 FILGQKGILLRYVT 320 (327)
T ss_dssp EEECSTTEEEEECC
T ss_pred EEEcCCceEEEEcC
Confidence 77888888777653
No 298
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.95 E-value=0.015 Score=70.11 Aligned_cols=263 Identities=11% Similarity=0.080 Sum_probs=155.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceee
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 631 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~ 631 (834)
...|.++....+| .|.+|+.+| +.+||..+.+...........|.++.. .++ .|..++.+ -|..||..+... .
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~--~ 134 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKL--T 134 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCE--E
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeE--E
Confidence 3568998888776 566676654 789998876544311112345777765 344 56666666 588888876543 2
Q ss_pred eec-----cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec------CCCeeEEEEecCCCEEEEEEcC
Q 003279 632 TFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 632 ~~~-----~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~------~~~i~~l~~sp~g~~ll~~s~d 700 (834)
.+. .....|.++....++. +. .++.+ -|..+|..+++....... ...|.++....+++.|.+++.
T Consensus 135 ~~~~~~~~l~~~~i~~i~~d~~g~-lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~- 210 (758)
T 3ott_A 135 SFDTRRNGLPNNTIYSIIRTKDNQ-IY-VGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE- 210 (758)
T ss_dssp EECHHHHCCSCSCEEEEEECTTCC-EE-EEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-
T ss_pred EeccCCCCcCCCeEEEEEEcCCCC-EE-EEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-
Confidence 221 1235688888877765 33 34444 578888877654322111 123778888877777677764
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEe-----ecCCCceEEEEEeC
Q 003279 701 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-----SCTGNKFHSCVFHP 775 (834)
Q Consensus 701 g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~-----~~~~~~I~svafsp 775 (834)
+.|..||..+++...........|.++....+|.+.+.. ++-+.+++..+... ..+... ......|.++....
T Consensus 211 ~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~ 288 (758)
T 3ott_A 211 GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DNGLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNIFADQ 288 (758)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TTEEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEEEECT
T ss_pred CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CCceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEEEEcC
Confidence 578899988775432211123458888888888877655 55688888766521 111100 01234688888888
Q ss_pred CCCEEEEEEcCCeEEEEECCCC-eEEEec-----cCCCCeEEEEEeCCCCEEEEEecCCcE
Q 003279 776 TFPSLLVIGCYETLELWNMTEN-KTLTLS-----AHDKLVSSLAASTVNGMVASASHDKCV 830 (834)
Q Consensus 776 dg~~L~sgs~dg~I~Iwdl~~~-~~~~l~-----~h~~~V~~lafspdg~~LaSgs~DG~I 830 (834)
+|. |.+|+..| |.++..... +..... .....|.++....+|.+.+. +.+|.+
T Consensus 289 ~g~-lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~Gl~ 346 (758)
T 3ott_A 289 EHN-IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANGLI 346 (758)
T ss_dssp TCC-EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTEEE
T ss_pred CCC-EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCcce
Confidence 776 66666666 555433221 111111 12346888888887776554 355543
No 299
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.95 E-value=0.0014 Score=71.53 Aligned_cols=196 Identities=8% Similarity=0.049 Sum_probs=113.4
Q ss_pred CeEEEEECCCCCEEEEE------------eCCCeEEEEecCCCCceee--eecc-----CCCCeEEEEEcc--CCC-cEE
Q 003279 596 WITDVRFSPSLSRLATS------------SADRTVRVWDTENPDYSLR--TFTG-----HSTTVMSLDFHP--SKE-DLL 653 (834)
Q Consensus 596 ~I~~l~fspdg~~Latg------------s~Dg~I~IWDl~s~~~~i~--~~~~-----h~~~V~sl~fsp--dg~-~ll 653 (834)
...++...++|..++++ ..+|.|.++|+.+...... .+.+ ..-....|.+.+ ++. +++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34566666765444443 2689999999984322122 2222 224667787766 344 344
Q ss_pred EEEeC--CCcEEEEECCCC-ceee---Eeec--CCCeeEEEEecCCCEEEEEEc-----------------CCeEEEEEC
Q 003279 654 CSCDN--NSEIRYWSINNG-SCAG---VFKC--QSGATQMRFQPRLGRILAAAI-----------------ENYISILDV 708 (834)
Q Consensus 654 asgs~--Dg~I~lwDl~s~-~~i~---~~~~--~~~i~~l~~sp~g~~ll~~s~-----------------dg~I~iwDl 708 (834)
++-.. +..|.+|++... .... .+.. -...+.+.+.++|..+++... .|.|+.||.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 44332 457778776543 2222 2222 234788999999876655431 245666666
Q ss_pred CCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC-CCCEEEEEEc
Q 003279 709 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TFPSLLVIGC 785 (834)
Q Consensus 709 ~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafsp-dg~~L~sgs~ 785 (834)
. +...... .-...+.++|+||++.|+.+. .+.|..|++...........+ ........+++.+ +|.+.+++..
T Consensus 211 ~--~~~~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 211 N--DVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp T--CCEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred C--eEEEeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecC
Confidence 4 2222222 234578999999999888776 779999999743222223333 2356678899999 5886665554
Q ss_pred CC-eEEEEECC
Q 003279 786 YE-TLELWNMT 795 (834)
Q Consensus 786 dg-~I~Iwdl~ 795 (834)
++ .|..|+..
T Consensus 287 ~g~~v~~~~P~ 297 (355)
T 3sre_A 287 NGMRIFFYDAE 297 (355)
T ss_dssp CHHHHHSCCTT
T ss_pred CceEEEEECCC
Confidence 43 44444443
No 300
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.94 E-value=0.0053 Score=67.11 Aligned_cols=228 Identities=10% Similarity=0.046 Sum_probs=126.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEEEec---cCCCCeEEEEECCC---CCEEEEEeC----C----Ce
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLE---EHTQWITDVRFSPS---LSRLATSSA----D----RT 617 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~-~~~~l~---~h~~~I~~l~fspd---g~~Latgs~----D----g~ 617 (834)
..-..++|.|||+ |+++..+|.|++++ .+++ .+..+. ........|+|+|+ +..|+++.. + ..
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 4478899999997 45556679999997 4454 222221 22356889999997 455554433 3 57
Q ss_pred EEEEecCCCC------ce-eeeecc-CCCCeEEEEEccCCCcEEEEEeC-------------CCcEEEEECCCCc-----
Q 003279 618 VRVWDTENPD------YS-LRTFTG-HSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNGS----- 671 (834)
Q Consensus 618 I~IWDl~s~~------~~-i~~~~~-h~~~V~sl~fspdg~~llasgs~-------------Dg~I~lwDl~s~~----- 671 (834)
|..|+..... .. +..+.. .......|+|.|+|. ++++.+. .|.|..++....-
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 8888876541 11 111221 112346799999986 4444322 2456666654220
Q ss_pred --eeeEee-cCCCeeEEEEecCCCEEEEEEcCC----eEEEEECCC--------C--------eEEEEEeCCCCCEEEEE
Q 003279 672 --CAGVFK-CQSGATQMRFQPRLGRILAAAIEN----YISILDVET--------Q--------VCRLKLQGHKNQVHSVC 728 (834)
Q Consensus 672 --~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg----~I~iwDl~t--------~--------~~~~~l~~h~~~I~sl~ 728 (834)
....+. .......++|+|+.+.|+++.... .|.+..... + .++..+.........++
T Consensus 186 f~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~ 265 (354)
T 3a9g_A 186 FPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGAS 265 (354)
T ss_dssp STTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEE
T ss_pred CCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceE
Confidence 011121 234467899999545565555432 344433211 0 12223311234577888
Q ss_pred Ec-------CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-cCCCceEEEEEeCCCCEEEEE
Q 003279 729 WN-------TSGEYLASVS-DELVRVWSIGSGSKGECIHELS-CTGNKFHSCVFHPTFPSLLVI 783 (834)
Q Consensus 729 ~s-------pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~-~~~~~I~svafspdg~~L~sg 783 (834)
|. .+|.++++.. .+.|...++...........+. .....+..+++.|||..+++.
T Consensus 266 ~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 266 FVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp ECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred EECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 84 4676666555 6788888887532111112222 224578899999999644443
No 301
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.93 E-value=0.014 Score=70.16 Aligned_cols=260 Identities=11% Similarity=0.029 Sum_probs=154.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCcee
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 630 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l-~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i 630 (834)
...|.||.-..+| +|..|+.+| +..||-...+..... ......|.++....++ .|..|+.+| +.+||..+.....
T Consensus 21 ~n~V~~I~qD~~G-~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~ 96 (758)
T 3ott_A 21 ASVVSCFLQDSEG-LIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ 96 (758)
T ss_dssp CCCEEEEEECTTS-CEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC
T ss_pred cceEEEEEECCCC-CEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC
Confidence 4569999999888 455666766 667775432211110 1123468888877665 566666665 7899987643211
Q ss_pred eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-----cCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003279 631 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----CQSGATQMRFQPRLGRILAAAIENYISI 705 (834)
Q Consensus 631 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-----~~~~i~~l~~sp~g~~ll~~s~dg~I~i 705 (834)
........|.++.. .++ .+. .++.+ .|..||..+++...... ....|.++....++... +++. +.|..
T Consensus 97 -~~~~~~~~i~~i~~-~~g-~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~-~Gl~~ 169 (758)
T 3ott_A 97 -PETDFPTDVRTMAL-QGD-TLW-LGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIY-VGTY-NGLCR 169 (758)
T ss_dssp -CSCCCCSCEEEEEE-ETT-EEE-EEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEE-EEET-TEEEE
T ss_pred -cccCCCceEEEEEe-cCC-cEE-EEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEE-EEeC-CCHhh
Confidence 11112335777654 343 344 45544 68889988765433211 12457777777766544 4554 56888
Q ss_pred EECCCCeEEEEE-eCC----CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 003279 706 LDVETQVCRLKL-QGH----KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 780 (834)
Q Consensus 706 wDl~t~~~~~~l-~~h----~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L 780 (834)
||..++...... ... ...|.++..+.++..|..++++.|..||..++.. .....+ ....|.++....+|. |
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~Gl~~~~~~~~~~-~~~~~l--~~~~i~~i~~d~~g~-l 245 (758)
T 3ott_A 170 YIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEGYLFQYFPSTGQI-KQTEAF--HNNSIKSLALDGNGD-L 245 (758)
T ss_dssp EETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEEEEEEEETTTTEE-EEEEEE--EEEEEEEEEECTTCC-E
T ss_pred CccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEECCCCeEEcCCCCeE-EeccCC--CCCeEEEEEEcCCCC-E
Confidence 998877543221 111 2248889888877755555555688899876521 111111 234578888887776 5
Q ss_pred EEEEcCCeEEEEECCCCeEEEecc--------CCCCeEEEEEeCCCCEEEEEecCC
Q 003279 781 LVIGCYETLELWNMTENKTLTLSA--------HDKLVSSLAASTVNGMVASASHDK 828 (834)
Q Consensus 781 ~sgs~dg~I~Iwdl~~~~~~~l~~--------h~~~V~~lafspdg~~LaSgs~DG 828 (834)
.+++. +-|.+++..+++...+.. ....|.++....+|.+.+. +..|
T Consensus 246 WigT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiG-T~~G 299 (758)
T 3ott_A 246 LAGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLG-TDYG 299 (758)
T ss_dssp EEEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEE-ESSS
T ss_pred EEEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEE-eCCc
Confidence 55554 468889987765543321 2345889988887775553 3445
No 302
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.93 E-value=0.012 Score=62.70 Aligned_cols=248 Identities=9% Similarity=0.148 Sum_probs=153.5
Q ss_pred CCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcE
Q 003279 573 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 652 (834)
Q Consensus 573 Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~l 652 (834)
+..|.|.|+.+...+.+-.-. --+...+|..+.||.-. ..++.|+|+++... +..+.- ...|..=.|-.+.. +
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~---AdsAIMnP~~~ViALra-g~~LQiFnletK~k-lks~~~-~e~VvfWkWis~~~-L 120 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKSK-MKAHTM-TDDVTFWKWISLNT-V 120 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECC---CSEEEECSSSSEEEEEE-TTEEEEEETTTTEE-EEEEEC-SSCEEEEEECSSSE-E
T ss_pred CCEEEEEECCCCCCccccccc---cceeeeCCCccEEEEec-CCeEEEechHHhhh-hcceec-CCccEEEEecCCCe-E
Confidence 347889999875544222111 12344588888877775 67899999998553 555443 35676667765533 3
Q ss_pred EEEEeCCCcEEEEECCC-CceeeEeec-----CCCeeEEEEecCCCEEEEEEc-------CCeEEEEECCCCeEEEEEeC
Q 003279 653 LCSCDNNSEIRYWSINN-GSCAGVFKC-----QSGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQG 719 (834)
Q Consensus 653 lasgs~Dg~I~lwDl~s-~~~i~~~~~-----~~~i~~l~~sp~g~~ll~~s~-------dg~I~iwDl~t~~~~~~l~~ 719 (834)
..++ +..|+-|++.. ..+.+.|.. ...|.....+++.++++..+- .|.+.+|..+.+. -..+++
T Consensus 121 ~lVT--~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieG 197 (365)
T 2xzh_A 121 ALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG 197 (365)
T ss_dssp EEEE--SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECC
T ss_pred EEEc--CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeee
Confidence 3333 67899999975 456666654 344777788889998877664 3678899988754 345667
Q ss_pred CCCCEEEEEEcCC---CCEEEEEe----CCeEEEEEcCCCC--C----ceeEEEeec---CCCceEEEEEeCCCCEEEEE
Q 003279 720 HKNQVHSVCWNTS---GEYLASVS----DELVRVWSIGSGS--K----GECIHELSC---TGNKFHSCVFHPTFPSLLVI 783 (834)
Q Consensus 720 h~~~I~sl~~spd---g~~Lasgs----Dg~I~IwDl~s~~--~----~~~i~~~~~---~~~~I~svafspdg~~L~sg 783 (834)
|......+.+..+ ..+++.+. .++++|.++.... . .+.+..+-. ...-..++..++....++..
T Consensus 198 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyvi 277 (365)
T 2xzh_A 198 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 277 (365)
T ss_dssp SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEE
Confidence 7554433333211 12344443 2589999996541 1 111111111 23456788899999999999
Q ss_pred EcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcE
Q 003279 784 GCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCV 830 (834)
Q Consensus 784 s~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I 830 (834)
+..|.|++||+.++.++ .-+-....|..-+.+.+..=++.....|.|
T Consensus 278 TK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqV 325 (365)
T 2xzh_A 278 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 325 (365)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEE
T ss_pred eCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEE
Confidence 99999999999999988 333344455444444333333444455544
No 303
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.92 E-value=0.033 Score=61.58 Aligned_cols=248 Identities=9% Similarity=0.142 Sum_probs=155.1
Q ss_pred CCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcE
Q 003279 573 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 652 (834)
Q Consensus 573 Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~l 652 (834)
+..|.|.|+.+...+.+-.- .--+...+|..+.||.-. ..++.|||+++... +..+.-. ..|..=.|-.+. .
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnle~K~k-lks~~~~-e~VvfWkWis~~--~ 118 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSK-MKAHTMT-DDVTFWKWISLN--T 118 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEE-EEEEECS-SCCCEEEEEETT--E
T ss_pred CCeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEec-CCeEEEEchHHhhh-hcceecC-CCceEEEecCCC--e
Confidence 44789999987554422211 112455678777777765 77999999998553 5555533 356555665443 3
Q ss_pred EEEEeCCCcEEEEECCC-CceeeEeec-----CCCeeEEEEecCCCEEEEEEc-------CCeEEEEECCCCeEEEEEeC
Q 003279 653 LCSCDNNSEIRYWSINN-GSCAGVFKC-----QSGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQG 719 (834)
Q Consensus 653 lasgs~Dg~I~lwDl~s-~~~i~~~~~-----~~~i~~l~~sp~g~~ll~~s~-------dg~I~iwDl~t~~~~~~l~~ 719 (834)
|+..+ +..|+-|++.. ..+++.|.. ...|.....+++.++++..+- .|.+.+|..+.+. -..+++
T Consensus 119 l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieG 196 (494)
T 1bpo_A 119 VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG 196 (494)
T ss_dssp EEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECC
T ss_pred EEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchhee
Confidence 33333 67899999974 356666654 344777888899999876653 3678899988653 345667
Q ss_pred CCCCEEEEEEcCCC---CEEEEEe----CCeEEEEEcCCCC---C--ceeEEE-ee---cCCCceEEEEEeCCCCEEEEE
Q 003279 720 HKNQVHSVCWNTSG---EYLASVS----DELVRVWSIGSGS---K--GECIHE-LS---CTGNKFHSCVFHPTFPSLLVI 783 (834)
Q Consensus 720 h~~~I~sl~~spdg---~~Lasgs----Dg~I~IwDl~s~~---~--~~~i~~-~~---~~~~~I~svafspdg~~L~sg 783 (834)
|......+.+..+. .+++.+. .++++|.++.... . .+.... +- ....-..++..++....++..
T Consensus 197 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyvi 276 (494)
T 1bpo_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 276 (494)
T ss_dssp SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEE
Confidence 76555444443221 2444444 2699999996541 0 111111 11 123456788899999999999
Q ss_pred EcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcE
Q 003279 784 GCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCV 830 (834)
Q Consensus 784 s~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I 830 (834)
+..|.|++||+.++.++ .-.-....|..-+.+....=++.....|.|
T Consensus 277 TK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 277 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324 (494)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred ecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceE
Confidence 99999999999999988 333344555555544444434444455554
No 304
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.91 E-value=0.046 Score=68.89 Aligned_cols=272 Identities=9% Similarity=0.007 Sum_probs=153.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCC--CCEEEEEeCCCeEEEEecCCCC-ce
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPD-YS 629 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~IWDl~s~~-~~ 629 (834)
.+|.-..|...|..-+.+..+.-..+|... ++....--.-..--....|+.. ..-++.. .++.++|..+++-. ..
T Consensus 652 ~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~~~ 729 (1158)
T 3ei3_A 652 QPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQKLH 729 (1158)
T ss_dssp SCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCSSSEE
T ss_pred CceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcEEEE-cCCceEEEEecccCCee
Confidence 355544454444443334445555555433 3333221111122234445432 2334443 35568888876432 22
Q ss_pred eeeeccCCCCeEEEEEccCCCcEEEEEeC------------------------------------------------CCc
Q 003279 630 LRTFTGHSTTVMSLDFHPSKEDLLCSCDN------------------------------------------------NSE 661 (834)
Q Consensus 630 i~~~~~h~~~V~sl~fspdg~~llasgs~------------------------------------------------Dg~ 661 (834)
++.+. -...+..++++|..+.+++.++. -+.
T Consensus 730 ~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~ 808 (1158)
T 3ei3_A 730 IRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHN 808 (1158)
T ss_dssp EEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEE
T ss_pred EEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEE
Confidence 33333 34577888888876655444321 124
Q ss_pred EEEEECCCCceeeEeecC--CCeeEEEEe---c-CCCEEEEEE----------cCCeEEEEECCCCeEEEEE-eCCCCCE
Q 003279 662 IRYWSINNGSCAGVFKCQ--SGATQMRFQ---P-RLGRILAAA----------IENYISILDVETQVCRLKL-QGHKNQV 724 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~~~--~~i~~l~~s---p-~g~~ll~~s----------~dg~I~iwDl~t~~~~~~l-~~h~~~I 724 (834)
|+++|..+.+.+..+... ..+.+++.. . ...++++|+ ..|.|++|++..++..... ...++.|
T Consensus 809 i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v 888 (1158)
T 3ei3_A 809 LLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAV 888 (1158)
T ss_dssp EEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCE
T ss_pred EEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcC
Confidence 777887777777666543 335555432 2 246788777 2478999998755332221 2256788
Q ss_pred EEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCeEEEe
Q 003279 725 HSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTL 802 (834)
Q Consensus 725 ~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iw--dl~~~~~~~l 802 (834)
++++-- +| +|+++-..+|++|++...+... ....... .|..+.....+.+|++|..-..|.++ +...++...+
T Consensus 889 ~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~--~~~~~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~ 963 (1158)
T 3ei3_A 889 YSMVEF-NG-KLLASINSTVRLYEWTTEKELR--TECNHYN-NIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEI 963 (1158)
T ss_dssp EEEEEE-TT-EEEEEETTEEEEEEECTTSCEE--EEEEECC-CSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEE
T ss_pred EEEeee-CC-EEEEEcCCEEEEEECCCCceEE--EEeeccc-cEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEE
Confidence 888754 34 6666778899999998653222 1111111 13333444457789999988866664 5556665543
Q ss_pred c--cCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 803 S--AHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 803 ~--~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
. .+...++++.|-.+ ..++.+..+|.|.+.
T Consensus 964 a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl 995 (1158)
T 3ei3_A 964 ARDFNPNWMSAVEILDD-DNFLGAENAFNLFVC 995 (1158)
T ss_dssp EECCSCBCEEEEEEEET-TEEEEEETTSEEEEE
T ss_pred EeecccccEEEEEEEcc-CcEEEEcCCCcEEEE
Confidence 3 45667889888755 467778899998875
No 305
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.88 E-value=0.0028 Score=68.05 Aligned_cols=201 Identities=9% Similarity=0.098 Sum_probs=124.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEE-ecc----CC--CCeEEEEE---CCCCCEEEEEe-----
Q 003279 550 ASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKST-LEE----HT--QWITDVRF---SPSLSRLATSS----- 613 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs-~Dg~I~IWd~~t~~~~~~-l~~----h~--~~I~~l~f---spdg~~Latgs----- 613 (834)
...---.|+.|++....|..++ ..++|..||...+..... +.+ .. ..+..|.| .++++++++..
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 3333445789988555555555 789999999886544333 322 11 13689999 68877777543
Q ss_pred --------CCCeEEEEecC---CCCceee-eecc-----------CCCCeEEEEEccCCCcEEEEEeCC-CcEEEEECCC
Q 003279 614 --------ADRTVRVWDTE---NPDYSLR-TFTG-----------HSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINN 669 (834)
Q Consensus 614 --------~Dg~I~IWDl~---s~~~~i~-~~~~-----------h~~~V~sl~fspdg~~llasgs~D-g~I~lwDl~s 669 (834)
.+..|..||+. +++.... .+.. -......++..++|+. .++++.. +.|..++...
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gna-YVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNS-YVAFALGMPAIARVSADG 168 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCE-EEEEEESSCEEEEECTTS
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCE-EEeCCCCCCeEEEEeCCC
Confidence 26789999998 5554221 1111 1134789999999874 4467777 8888777764
Q ss_pred CceeeEeec------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE-EEEEe--CC---CCCEEEE-EEcCCCCEE
Q 003279 670 GSCAGVFKC------QSGATQMRFQPRLGRILAAAIENYISILDVETQVC-RLKLQ--GH---KNQVHSV-CWNTSGEYL 736 (834)
Q Consensus 670 ~~~i~~~~~------~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~-~~~l~--~h---~~~I~sl-~~spdg~~L 736 (834)
......+.. ....+.++++|++..|++....+.|..+|+.+... ..... +. -.....| ....+|+.|
T Consensus 169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEE
Confidence 422222111 12367899999999999998899999999985433 01111 21 1223443 333477775
Q ss_pred EEEe--CCeEEEEEcCC
Q 003279 737 ASVS--DELVRVWSIGS 751 (834)
Q Consensus 737 asgs--Dg~I~IwDl~s 751 (834)
+++. .+.+.+.+...
T Consensus 249 lV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 249 LVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEETTEEEEEECSST
T ss_pred EEEcCCCCEEEEECCCC
Confidence 5554 55555555444
No 306
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.86 E-value=0.0039 Score=68.04 Aligned_cols=224 Identities=12% Similarity=0.073 Sum_probs=124.1
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc-eeeee---ccCCCCeEEEEEccC---CCcEEEEEeCC-----CcE
Q 003279 595 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTF---TGHSTTVMSLDFHPS---KEDLLCSCDNN-----SEI 662 (834)
Q Consensus 595 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~-~i~~~---~~h~~~V~sl~fspd---g~~llasgs~D-----g~I 662 (834)
.....++|.|++++++ +..++.|++++ . +.. .+..+ .........|+|+|+ +..++++.... ..|
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~-~-g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR-E-GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE-T-TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE-C-CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 3567999999998555 45679999998 3 221 11111 122456889999998 55566555433 678
Q ss_pred EEEECCCCce-----e-eEeec----CCCeeEEEEecCCCEEEEEEc-------------CCeEEEEECCCC--------
Q 003279 663 RYWSINNGSC-----A-GVFKC----QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ-------- 711 (834)
Q Consensus 663 ~lwDl~s~~~-----i-~~~~~----~~~i~~l~~sp~g~~ll~~s~-------------dg~I~iwDl~t~-------- 711 (834)
..|+...+.. + ..+.. ......++|.|++..+++.+. .+.|..+|....
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 8888875421 1 11221 123468999999865555432 156777766531
Q ss_pred ------eEEEEEeCCCCCEEEEEEcC-CCCEEEEEe-CCeE------EEEEcCCCCC---------------ceeEEEee
Q 003279 712 ------VCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELV------RVWSIGSGSK---------------GECIHELS 762 (834)
Q Consensus 712 ------~~~~~l~~h~~~I~sl~~sp-dg~~Lasgs-Dg~I------~IwDl~s~~~---------------~~~i~~~~ 762 (834)
..+.. .++ .....++|+| ++.++++-. .+.+ .|.-+..+.. ...+..+.
T Consensus 188 ~~~~~~~~i~a-~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~ 265 (352)
T 2ism_A 188 GRRGARPEVYS-LGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP 265 (352)
T ss_dssp TCTTSCTTEEE-ECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred CCCCCCccEEE-EcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence 11111 122 2356789999 677666544 2221 2333332220 11222221
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe-------EEEeccCCCCeEEEEEeCCCCEEEEEe
Q 003279 763 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-------TLTLSAHDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 763 ~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~-------~~~l~~h~~~V~~lafspdg~~LaSgs 825 (834)
.......++| .+|..+++.-..+.|...+++... ...+......+.++++.|||.++++..
T Consensus 266 -~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 266 -QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp -TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred -CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 2234566777 355544443345578777775432 122223346789999999998777654
No 307
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.84 E-value=0.0035 Score=67.94 Aligned_cols=180 Identities=10% Similarity=0.159 Sum_probs=119.2
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecC----CC---EEEEEEc---CCeEEEEEC--CCCeEEEEEe
Q 003279 651 DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR----LG---RILAAAI---ENYISILDV--ETQVCRLKLQ 718 (834)
Q Consensus 651 ~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~----g~---~ll~~s~---dg~I~iwDl--~t~~~~~~l~ 718 (834)
.+++.....+-+.+||+ +++.+..+.. ..++.+.+-|. ++ .+++... ++.|.+|++ .++. +..+.
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~ 117 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMT 117 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECS
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeecc
Confidence 35656677889999999 7888888765 66777777663 22 2334443 478999977 3443 44442
Q ss_pred C------CC-CCEEEEEE--cCC-CC-EEEEEe-CCeEEEEEcCCC----CCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003279 719 G------HK-NQVHSVCW--NTS-GE-YLASVS-DELVRVWSIGSG----SKGECIHELSCTGNKFHSCVFHPTFPSLLV 782 (834)
Q Consensus 719 ~------h~-~~I~sl~~--spd-g~-~Lasgs-Dg~I~IwDl~s~----~~~~~i~~~~~~~~~I~svafspdg~~L~s 782 (834)
. .. ..+..+|+ ++. +. ++++.. ++.+..|++... -..+.++++.. ...+..|++.+....|++
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv 196 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYI 196 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEE
Confidence 1 11 55677888 774 54 455555 899999998432 12345666665 457889999999999999
Q ss_pred EEcCCeEEEEECC-----CCeEEEeccC---CCCeEEEEEe--CCCC-EEEEEe-cCCcEEEeC
Q 003279 783 IGCYETLELWNMT-----ENKTLTLSAH---DKLVSSLAAS--TVNG-MVASAS-HDKCVKIWK 834 (834)
Q Consensus 783 gs~dg~I~Iwdl~-----~~~~~~l~~h---~~~V~~lafs--pdg~-~LaSgs-~DG~I~IWd 834 (834)
+-.+..|..|+.+ +++.+...+. ...+..|++- ++++ +|++++ .+..+.|||
T Consensus 197 ~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 9999888888865 3445543322 2468888884 5555 566555 566777775
No 308
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.84 E-value=0.024 Score=60.45 Aligned_cols=234 Identities=13% Similarity=0.172 Sum_probs=154.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccC
Q 003279 557 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 636 (834)
Q Consensus 557 sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h 636 (834)
+.-.+|..+.||.=. ..++.|+|+++...+..+.- ...|..=.|-.+. .|+..+ +..|+-|+++....+.+.+..|
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P~kvFdR~ 146 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH 146 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCCEEEEECC
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCCceeeecc
Confidence 344688888888766 57899999999988887764 4567777887554 454443 4579999998766667777665
Q ss_pred C----CCeEEEEEccCCCcEEEEEe------CCCcEEEEECCCCceeeEeecCCCeeEE-EEecCC----CEEEE-EEc-
Q 003279 637 S----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSGATQM-RFQPRL----GRILA-AAI- 699 (834)
Q Consensus 637 ~----~~V~sl~fspdg~~llasgs------~Dg~I~lwDl~s~~~i~~~~~~~~i~~l-~~sp~g----~~ll~-~s~- 699 (834)
. ..|.....+++.+.++++|- -.|.+.+|..+.+.. ..+.. ...+. .+-.+| ..+++ +..
T Consensus 147 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieG--haa~F~~~~~~g~~~~~~lf~fa~r~ 223 (365)
T 2xzh_A 147 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEG--HAASFAQFKMEGNAEESTLFCFAVRG 223 (365)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEECC--SEEEEEEECCTTCSSCEEEEEEEEEE
T ss_pred hhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc-ceeee--eeeeeEEEecCCCCCCceEEEEEEec
Confidence 3 56777778888887776663 236788888875432 22221 11111 111111 12222 222
Q ss_pred --CCeEEEEECCCC--------e-EEEEEeC---CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC
Q 003279 700 --ENYISILDVETQ--------V-CRLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 764 (834)
Q Consensus 700 --dg~I~iwDl~t~--------~-~~~~l~~---h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~ 764 (834)
.+.++|.++... + .+..+.. ..+-..++..++.-.+++.-+ -|.|++||+.++ .++..-+..
T Consensus 224 ~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTg---t~i~~nrIS 300 (365)
T 2xzh_A 224 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRIS 300 (365)
T ss_dssp TTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECC
T ss_pred CCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccC---cEEEEeccC
Confidence 258999988432 1 1211211 234556788887777777766 999999999999 788887777
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 765 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 765 ~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
...|...+.+....-+++....|.|.-..+++..++
T Consensus 301 ~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 301 GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTHH
T ss_pred CCceEEecccCCCCcEEEEcCCCEEEEEEECcccEe
Confidence 888877777666666777778887777777665544
No 309
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.81 E-value=0.0085 Score=65.46 Aligned_cols=226 Identities=12% Similarity=0.067 Sum_probs=129.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeee---ccCCCCeEEEEEccC---CCcEEEEEeC---C----C
Q 003279 594 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPS---KEDLLCSCDN---N----S 660 (834)
Q Consensus 594 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~---~~h~~~V~sl~fspd---g~~llasgs~---D----g 660 (834)
-.....++|.|+++ |+++..++.|+++|.. +...+..+ .........|+|+|+ +..++++... + .
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d~~-G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLISPS-GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEECSS-CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEeCC-CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34578999999997 4555667999999743 32222211 122356889999997 5555555442 3 5
Q ss_pred cEEEEECCCC--c---e--e-eEeec--CCCeeEEEEecCCCEEEEEEc-------------CCeEEEEECCCC------
Q 003279 661 EIRYWSINNG--S---C--A-GVFKC--QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ------ 711 (834)
Q Consensus 661 ~I~lwDl~s~--~---~--i-~~~~~--~~~i~~l~~sp~g~~ll~~s~-------------dg~I~iwDl~t~------ 711 (834)
.|..|+.... . . + ..+.. ......+.|.|++..+++.+. .+.|..+|....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 6888887654 1 1 1 11221 123567999999876665432 246776766532
Q ss_pred ---eEEEEEeCCCCCEEEEEEcC-CCCEEEEEe--CC--eEEEEEcCCCCC---------------ceeEEEeecCCCce
Q 003279 712 ---VCRLKLQGHKNQVHSVCWNT-SGEYLASVS--DE--LVRVWSIGSGSK---------------GECIHELSCTGNKF 768 (834)
Q Consensus 712 ---~~~~~l~~h~~~I~sl~~sp-dg~~Lasgs--Dg--~I~IwDl~s~~~---------------~~~i~~~~~~~~~I 768 (834)
..+.. .++. ....++|+| ++.++++-. +. .|.+.. .+.. ...+..+.......
T Consensus 186 f~~~~i~a-~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap 261 (354)
T 3a9g_A 186 FPNSPIWS-YGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAP 261 (354)
T ss_dssp STTCCEEE-ECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCE
T ss_pred CCCCcEEE-EccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCC
Confidence 11221 2343 345899999 677666544 22 344432 2210 01222331223456
Q ss_pred EEEEEe-------CCCCEEEEEEcCCeEEEEECCCC-eEE---Eec-cCCCCeEEEEEeCCCCEEEEEe
Q 003279 769 HSCVFH-------PTFPSLLVIGCYETLELWNMTEN-KTL---TLS-AHDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 769 ~svafs-------pdg~~L~sgs~dg~I~Iwdl~~~-~~~---~l~-~h~~~V~~lafspdg~~LaSgs 825 (834)
..++|. .+|.++++.-..+.|..+++... +.. .+. .....+.++++.|||.++++..
T Consensus 262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 777873 45655554445568888888753 332 222 2246799999999998777664
No 310
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.78 E-value=0.002 Score=68.12 Aligned_cols=228 Identities=9% Similarity=0.061 Sum_probs=118.3
Q ss_pred CCCEEEEEe-CC-----CcEEEEeCCCCeEEEE--eccCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEecCCCC--
Q 003279 563 DGKLLATGG-HD-----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPD-- 627 (834)
Q Consensus 563 dg~~Lasgs-~D-----g~I~IWd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~D-----g~I~IWDl~s~~-- 627 (834)
++.+++.|+ .+ ..+.+||..+.+-... +.........+.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL--HDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE--CCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 445666666 32 4688999887654322 1111111222222 56677777754 468999998766
Q ss_pred -ceee-eeccCCCCeEEEEEccCCCcEEEEEeCC-----CcEEEEECCCCceeeEeecCCC--eeEEEEecCCCEEEEEE
Q 003279 628 -YSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAA 698 (834)
Q Consensus 628 -~~i~-~~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~lwDl~s~~~i~~~~~~~~--i~~l~~sp~g~~ll~~s 698 (834)
.... .+.........+.+ + ..+++.|+.+ ..+.+||+.+.+....-..... -.+++. .++..+++|+
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~--~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG 167 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL--G-DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGG 167 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECC
T ss_pred eeEECCCCCCCccceeEEEE--C-CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECC
Confidence 4222 11111112222222 3 4566676643 3688999988765443332211 122222 2556666666
Q ss_pred cC-----CeEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCC
Q 003279 699 IE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTG 765 (834)
Q Consensus 699 ~d-----g~I~iwDl~t~~~~~~--l~~h~~~I~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~ 765 (834)
.+ ..+.+||+.+.+-... +........++.+ ++++++.|+ + ..|.+||+.+..- ..+..+....
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~p~~r 244 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSW-TTVTSMTTPR 244 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE-EEECCCSSCC
T ss_pred CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcE-EECCCCCCcc
Confidence 54 4689999988743322 1111111122222 566666665 3 3689999987621 1221121111
Q ss_pred CceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEE
Q 003279 766 NKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLT 801 (834)
Q Consensus 766 ~~I~svafspdg~~L~sgs~d-----g~I~Iwdl~~~~~~~ 801 (834)
.....+.+ ++..++.|+.+ ..|.+||+.+.+...
T Consensus 245 ~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 283 (301)
T 2vpj_A 245 CYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSWEV 283 (301)
T ss_dssp BSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEEEE
T ss_pred cceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeEEE
Confidence 11222222 55666666654 368899998876553
No 311
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.75 E-value=0.005 Score=67.25 Aligned_cols=233 Identities=8% Similarity=0.062 Sum_probs=127.4
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc-eee----eeccCCCCeEEEEEccC---CCcEEEEEeC-------C
Q 003279 595 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLR----TFTGHSTTVMSLDFHPS---KEDLLCSCDN-------N 659 (834)
Q Consensus 595 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~-~i~----~~~~h~~~V~sl~fspd---g~~llasgs~-------D 659 (834)
.....|+|.|+++.|+++...|.|++++...... .+. .+.........|+|+|+ +..++++-.. .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 3468999999998444556789999998542110 011 11122345789999996 4555555432 2
Q ss_pred CcEEEEECCCC--c--eee-Eeec-------CCCeeEEEEecCCCEEEEEEc-------------CCeEEEEECCCC---
Q 003279 660 SEIRYWSINNG--S--CAG-VFKC-------QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ--- 711 (834)
Q Consensus 660 g~I~lwDl~s~--~--~i~-~~~~-------~~~i~~l~~sp~g~~ll~~s~-------------dg~I~iwDl~t~--- 711 (834)
..|..|++..+ . ... .+.. ......+.|.|++..+++.+. .+.|.-+|....
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 35777776543 1 111 1111 122457999999854444433 246777776532
Q ss_pred -----------eEEEEEeCCCCCEEEEEEcC-CCCEEEEEe--CCeEEEEEcCCCCC-----------------------
Q 003279 712 -----------VCRLKLQGHKNQVHSVCWNT-SGEYLASVS--DELVRVWSIGSGSK----------------------- 754 (834)
Q Consensus 712 -----------~~~~~l~~h~~~I~sl~~sp-dg~~Lasgs--Dg~I~IwDl~s~~~----------------------- 754 (834)
..+.. .++ .....++|+| +|.++++-. ++.=.|.-+..+..
T Consensus 178 ~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp TCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 11111 223 3467899999 566555433 22122222222111
Q ss_pred -----ceeEEEeecCCCceEEEEEeC-------CCCEEEEEEcCCeEEEEECCCCeEE---Eec-cCCCCeEEEEEeCCC
Q 003279 755 -----GECIHELSCTGNKFHSCVFHP-------TFPSLLVIGCYETLELWNMTENKTL---TLS-AHDKLVSSLAASTVN 818 (834)
Q Consensus 755 -----~~~i~~~~~~~~~I~svafsp-------dg~~L~sgs~dg~I~Iwdl~~~~~~---~l~-~h~~~V~~lafspdg 818 (834)
...+..+. +...+..++|.. ++.++++.-..+.|...++..++.. .+. .....+..+++.|||
T Consensus 256 ~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG 334 (353)
T 2g8s_A 256 IVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDG 334 (353)
T ss_dssp SCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTS
T ss_pred CCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCC
Confidence 01111222 123466677764 3555555445668888888776544 222 234579999999999
Q ss_pred CEEEEEe-cCCcE
Q 003279 819 GMVASAS-HDKCV 830 (834)
Q Consensus 819 ~~LaSgs-~DG~I 830 (834)
.++++.. .+|.|
T Consensus 335 ~lyv~td~~~g~I 347 (353)
T 2g8s_A 335 YLYVLTDESSGEL 347 (353)
T ss_dssp CEEEEECSTTEEE
T ss_pred cEEEEEeCCCCEE
Confidence 9766543 45654
No 312
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.75 E-value=0.0031 Score=67.73 Aligned_cols=197 Identities=8% Similarity=0.041 Sum_probs=124.0
Q ss_pred ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCC---------CeeEEEE---ecCCCEEEEEEc--
Q 003279 634 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS---------GATQMRF---QPRLGRILAAAI-- 699 (834)
Q Consensus 634 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~---------~i~~l~~---sp~g~~ll~~s~-- 699 (834)
........+++|++....++++.-..+.|..||...+..... .... .+..+.| .+++..+++...
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 344455678999987676666665799999999986654433 2211 2578899 688555554432
Q ss_pred -----------CCeEEEEECC---CCeEEEEEeC-------------CCCCEEEEEEcCCCCEEEEEe-C-CeEEEEEcC
Q 003279 700 -----------ENYISILDVE---TQVCRLKLQG-------------HKNQVHSVCWNTSGEYLASVS-D-ELVRVWSIG 750 (834)
Q Consensus 700 -----------dg~I~iwDl~---t~~~~~~l~~-------------h~~~I~sl~~spdg~~Lasgs-D-g~I~IwDl~ 750 (834)
+..|..||+. +++.+....- -......++..++|+..++++ . +.|..++..
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 5789999999 7766554431 112478999999999999888 6 776666654
Q ss_pred CCCCceeEE-Ee--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeE--EEec--cC---CCCeEEE-EEeCCCC
Q 003279 751 SGSKGECIH-EL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT--LTLS--AH---DKLVSSL-AASTVNG 819 (834)
Q Consensus 751 s~~~~~~i~-~~--~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~--~~l~--~h---~~~V~~l-afspdg~ 819 (834)
... ..... .. .......+.++++|++..|++....+.|..+|+..... +... +. -.....| ..-.+|+
T Consensus 168 G~~-~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~ 246 (334)
T 2p9w_A 168 GKT-VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNE 246 (334)
T ss_dssp SCC-EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred CCE-EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCE
Confidence 331 11111 11 11123367899999999999988888999999885443 3222 21 1223443 3334677
Q ss_pred E-EEEEecCCcEEE
Q 003279 820 M-VASASHDKCVKI 832 (834)
Q Consensus 820 ~-LaSgs~DG~I~I 832 (834)
. |++.+..+.+.+
T Consensus 247 vllV~~~~~~~~~l 260 (334)
T 2p9w_A 247 SVLVGARAPYAISF 260 (334)
T ss_dssp EEEEEEETTEEEEE
T ss_pred EEEEEcCCCCEEEE
Confidence 6 455545554443
No 313
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.74 E-value=0.02 Score=62.18 Aligned_cols=233 Identities=12% Similarity=0.104 Sum_probs=132.2
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCce-eeee----ccCCCCeEEEEEccC---CCcEEEEE--eC
Q 003279 589 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTF----TGHSTTVMSLDFHPS---KEDLLCSC--DN 658 (834)
Q Consensus 589 ~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~-i~~~----~~h~~~V~sl~fspd---g~~llasg--s~ 658 (834)
.+...-...+.|+|.||+.++++--..|.|++++...+... +..+ .........|+|+|+ +..++++- ..
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 34334456789999999987777655899999987654421 1111 223456899999995 34344332 24
Q ss_pred CCcEEEEECCCCc--------eeeE---eec--CCCeeEEEEecCCCEEEEEEc-------------CCeEEEEECCCC-
Q 003279 659 NSEIRYWSINNGS--------CAGV---FKC--QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ- 711 (834)
Q Consensus 659 Dg~I~lwDl~s~~--------~i~~---~~~--~~~i~~l~~sp~g~~ll~~s~-------------dg~I~iwDl~t~- 711 (834)
++.|.-|.+..+. .... +.. ......+.|.|++..+++.+. .|.|.-++....
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i 185 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP 185 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence 5567777765421 1111 211 223567999999877666542 356666666532
Q ss_pred --------eEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC---------------ceeEEEeecCCC
Q 003279 712 --------VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK---------------GECIHELSCTGN 766 (834)
Q Consensus 712 --------~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~---------------~~~i~~~~~~~~ 766 (834)
..+.. .+|. ....++|+|+|.++++-. |+.-.|.-+..+.. ...+..+..+..
T Consensus 186 p~~nPf~~~~i~a-~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ 263 (347)
T 3das_A 186 APGNPFPGSPVYS-YGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA 263 (347)
T ss_dssp CTTCSSTTCCEEE-BCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred cCCCCCCCCeEEe-eCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence 11222 2443 345899999988776654 43233333333211 112223332223
Q ss_pred ceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCeE----E-EeccCCCCeEEEEEeCCCCEEEEEe
Q 003279 767 KFHSCVFHPTFPSLLVIGC-YETLELWNMTENKT----L-TLSAHDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 767 ~I~svafspdg~~L~sgs~-dg~I~Iwdl~~~~~----~-~l~~h~~~V~~lafspdg~~LaSgs 825 (834)
....++|.. +. ++.+.. .+.|..+.+..... . .+.+....+.+|+..|||.++++.+
T Consensus 264 ap~G~~~~~-g~-~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 264 SPSGIAYAE-GS-VWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CEEEEEEET-TE-EEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCcceEEEc-Cc-eeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 456667763 44 444444 44677667665432 1 2334457899999999998776654
No 314
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.68 E-value=0.052 Score=60.05 Aligned_cols=234 Identities=13% Similarity=0.177 Sum_probs=154.4
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccC
Q 003279 557 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 636 (834)
Q Consensus 557 sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h 636 (834)
+.-.+|..+.||.=. ..++.|||+++...+..+.-.+ .|..=.|-.+ +.|+.. .+..|+-|+++....+.+.+..|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lV-T~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALV-TDNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEE-CSSEEEEEESSSSCCCEEEEECC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEE-cCCeeEEecccCCCCchhheecc
Confidence 455678777777765 6799999999998888876444 5666666544 345555 35689999998766667777665
Q ss_pred C----CCeEEEEEccCCCcEEEEEe------CCCcEEEEECCCCceeeEeecCCCeeE-EEEecCC----CEEEE-EEc-
Q 003279 637 S----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRL----GRILA-AAI- 699 (834)
Q Consensus 637 ~----~~V~sl~fspdg~~llasgs------~Dg~I~lwDl~s~~~i~~~~~~~~i~~-l~~sp~g----~~ll~-~s~- 699 (834)
. ..|.....+++.+.++++|= -.|.+.+|..+.+..- .+.. ...+ ..+-.+| ..+++ +..
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ-~ieG--haa~F~~~~~~g~~~~~~lf~fa~r~ 222 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PIEG--HAASFAQFKMEGNAEESTLFCFAVRG 222 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE-EECC--SEEEEEEEECTTCSSEEEEEEEEECS
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc-hhee--eeeeeEEEecCCCCCCceEEEEEEec
Confidence 3 56777788888887776663 2467888988755422 2221 1111 1111111 12222 222
Q ss_pred --CCeEEEEECCCC--------eEEEEE-eC---CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC
Q 003279 700 --ENYISILDVETQ--------VCRLKL-QG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 764 (834)
Q Consensus 700 --dg~I~iwDl~t~--------~~~~~l-~~---h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~ 764 (834)
.+.++|.++... +....+ .. ..+-..++..++.-.+++.-+ -|.|++||+.++ .++..-+..
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg---t~i~~nrIs 299 (494)
T 1bpo_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRIS 299 (494)
T ss_dssp TTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECC
T ss_pred CCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc---eeeeeeccc
Confidence 278999998542 111111 11 234556788888777777777 899999999999 788887777
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 765 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 765 ~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
...|...+.+....-+++....|.|.-..+++..++
T Consensus 300 ~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 300 GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp SSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred CCceEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence 888877777777777888888888877777666544
No 315
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.67 E-value=0.0073 Score=65.93 Aligned_cols=226 Identities=13% Similarity=0.075 Sum_probs=123.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-------ccCCCCeEEEEECCC---CCEEEEEe-C-------C
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPS---LSRLATSS-A-------D 615 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l-------~~h~~~I~~l~fspd---g~~Latgs-~-------D 615 (834)
.-..|+|.|||++|+++...|.|++++.. +.....+ .........|+|+|+ +..|+.+. . .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 36789999999834455678999999853 3322111 122345789999996 44444442 2 2
Q ss_pred CeEEEEecCCCCce---ee----eec---cCCCCeEEEEEccCCCcEEEEEeC-------------CCcEEEEECCCCc-
Q 003279 616 RTVRVWDTENPDYS---LR----TFT---GHSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNGS- 671 (834)
Q Consensus 616 g~I~IWDl~s~~~~---i~----~~~---~h~~~V~sl~fspdg~~llasgs~-------------Dg~I~lwDl~s~~- 671 (834)
..|..|++...... .. .+. ........|+|.|+|. |+++.+. .|.|..+|....-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 35767776543110 11 111 1112245799999985 4444332 2467777765320
Q ss_pred -----------eeeEee-cCCCeeEEEEecCCCEEEEEEcCC----eEEEEECC--------C-----------------
Q 003279 672 -----------CAGVFK-CQSGATQMRFQPRLGRILAAAIEN----YISILDVE--------T----------------- 710 (834)
Q Consensus 672 -----------~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg----~I~iwDl~--------t----------------- 710 (834)
....+. .......++|+|..+.|+++.... .|.+.... .
T Consensus 177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 112222 234478899999656676665532 23222110 0
Q ss_pred ----CeEEEEEeCCCCCEEEEEEcC-------CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 003279 711 ----QVCRLKLQGHKNQVHSVCWNT-------SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 778 (834)
Q Consensus 711 ----~~~~~~l~~h~~~I~sl~~sp-------dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~ 778 (834)
..++..+. +...+..++|.. +|.++++.. .+.|...++..+........+......+..+++.|+|.
T Consensus 257 ~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ 335 (353)
T 2g8s_A 257 VAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY 335 (353)
T ss_dssp CTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred CCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence 01122222 234567788864 466666555 77888888875421111111223345789999999998
Q ss_pred EEEE
Q 003279 779 SLLV 782 (834)
Q Consensus 779 ~L~s 782 (834)
.+++
T Consensus 336 lyv~ 339 (353)
T 2g8s_A 336 LYVL 339 (353)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 316
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.66 E-value=0.00012 Score=87.81 Aligned_cols=214 Identities=8% Similarity=0.019 Sum_probs=128.4
Q ss_pred CCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC----CceeeEeec-CCCeeEEEEe
Q 003279 614 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFKC-QSGATQMRFQ 688 (834)
Q Consensus 614 ~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s----~~~i~~~~~-~~~i~~l~~s 688 (834)
....|++.++..... ..+......+..|+|++.+..|+++-...+.|+.+++.. ......+.. ......+++.
T Consensus 384 ~~~~I~~id~~~~~~--~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD 461 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 461 (699)
T ss_dssp CTTC-CEECTTSCCE--ECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred CccceEEEeCCCCcc--eeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence 345788888876443 222223345778999988777776666678999999875 222222211 1235567888
Q ss_pred cCCCEEEEEE-cCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEEcCCCCCceeEEEeecC
Q 003279 689 PRLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECIHELSCT 764 (834)
Q Consensus 689 p~g~~ll~~s-~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--D-g~I~IwDl~s~~~~~~i~~~~~~ 764 (834)
+.++.|+++. ..+.|.++++........+.........|+++|.+.+|+.+. . +.|.++++..... .. .+...
T Consensus 462 ~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~--l~~~~ 538 (699)
T 1n7d_A 462 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YS--LVTEN 538 (699)
T ss_dssp CSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CE--ESCSS
T ss_pred eeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eE--EEeCC
Confidence 6666666554 467899999886654444433334567889999765555544 3 6788887764321 11 11222
Q ss_pred CCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEecc---CCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 765 GNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 765 ~~~I~svafspdg~~L~sgs~-dg~I~Iwdl~~~~~~~l~~---h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
......++|++++..|+++.. .+.|.++++.......+.. .......|++..+ .++++....+.|..+
T Consensus 539 l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~ 610 (699)
T 1n7d_A 539 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSA 610 (699)
T ss_dssp CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEE
T ss_pred CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEE
Confidence 345678999998777777665 4589999997654443322 2234456666553 344444455666654
No 317
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.57 E-value=0.0096 Score=62.94 Aligned_cols=226 Identities=8% Similarity=0.021 Sum_probs=117.3
Q ss_pred CEEEEEeC--CCcEEEEeCCCCeEEEE--eccCCCCeEEEEECCCCCEEEEEeCC----CeEEEEecCCCCceeee-ecc
Q 003279 565 KLLATGGH--DKKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENPDYSLRT-FTG 635 (834)
Q Consensus 565 ~~Lasgs~--Dg~I~IWd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~D----g~I~IWDl~s~~~~i~~-~~~ 635 (834)
.+++.|+. ...+.+||..+.+-... +.........+.+ ++.+++.|+.+ ..+.+||+.+....... +..
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 34555654 35789999887654422 1111112222333 56677777754 67889999876542221 111
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCC------CcEEEEECCCCceeeEeecCC--CeeEEEEecCCCEEEEEEc--------
Q 003279 636 HSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLGRILAAAI-------- 699 (834)
Q Consensus 636 h~~~V~sl~fspdg~~llasgs~D------g~I~lwDl~s~~~i~~~~~~~--~i~~l~~sp~g~~ll~~s~-------- 699 (834)
.......+.+ + ..+++.|+.+ ..+.+||+.+.+-...-.... .-.+++. .++..+++|+.
T Consensus 91 ~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 91 PRDSLAACAA--E-GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp CCBSCEEEEE--T-TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCE
T ss_pred cccceeEEEE--C-CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCccc
Confidence 1111222222 3 4566677654 468999998876544322211 1122222 35555666654
Q ss_pred -CCeEEEEECCCCeEEEEEeCC-CCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003279 700 -ENYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSC 771 (834)
Q Consensus 700 -dg~I~iwDl~t~~~~~~l~~h-~~~I~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 771 (834)
...+.+||+.+.+-...-... ...-.+++.. ++++++.|+ + ..+.+||+.+.. ...+..+.........+
T Consensus 167 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~ 244 (306)
T 3ii7_A 167 VLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNE-WKMVSPMPWKGVTVKCA 244 (306)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTE-EEECCCCSCCBSCCEEE
T ss_pred ccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCc-EEECCCCCCCccceeEE
Confidence 345899999887433221111 1111122222 566666655 2 368999998752 11221122111222233
Q ss_pred EEeCCCCEEEEEEcC-----CeEEEEECCCCeEE
Q 003279 772 VFHPTFPSLLVIGCY-----ETLELWNMTENKTL 800 (834)
Q Consensus 772 afspdg~~L~sgs~d-----g~I~Iwdl~~~~~~ 800 (834)
.+ ++..+++|+.+ ..|.+||+.+.+..
T Consensus 245 ~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 245 AV--GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp EE--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred EE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 33 56666667644 47899999887755
No 318
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.49 E-value=0.0082 Score=63.35 Aligned_cols=228 Identities=11% Similarity=0.052 Sum_probs=115.7
Q ss_pred CCEEEEEeCC----CcEEEEeCCCCeEEEE--eccCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEecCCCCceeee
Q 003279 564 GKLLATGGHD----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSLRT 632 (834)
Q Consensus 564 g~~Lasgs~D----g~I~IWd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~D-----g~I~IWDl~s~~~~i~~ 632 (834)
+.+++.|+.+ ..+.+||+.+.+-... +......-..+.+ ++.+++.|+.+ ..+.+||..+.......
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 3455556543 4688899887654332 1111111122222 56677777754 35889998876542211
Q ss_pred -eccCCCCeEEEEEccCCCcEEEEEeCCC-----cEEEEECCCCceeeEeecCCC--eeEEEEecCCCEEEEEEc-----
Q 003279 633 -FTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI----- 699 (834)
Q Consensus 633 -~~~h~~~V~sl~fspdg~~llasgs~Dg-----~I~lwDl~s~~~i~~~~~~~~--i~~l~~sp~g~~ll~~s~----- 699 (834)
..........+.+ + +.+++.|+.++ .+.+||+.+.+....-..... ..+++. .++..+++|+.
T Consensus 94 ~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~ 169 (302)
T 2xn4_A 94 NMRDRRSTLGAAVL--N-GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASR 169 (302)
T ss_dssp CCSSCCBSCEEEEE--T-TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTT
T ss_pred CCCccccceEEEEE--C-CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCC
Confidence 1111111222222 3 45666666543 578899887765443222111 122222 24555666654
Q ss_pred --CCeEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCCCceE
Q 003279 700 --ENYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFH 769 (834)
Q Consensus 700 --dg~I~iwDl~t~~~~~~--l~~h~~~I~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I~ 769 (834)
...+.+||+.+.+-... +....... +++.. ++++++.|+ + ..+.+||+.+..- ..+...........
T Consensus 170 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~r~~~~ 246 (302)
T 2xn4_A 170 QCLSTVECYNATTNEWTYIAEMSTRRSGA-GVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAW-RQVADMNMCRRNAG 246 (302)
T ss_dssp EECCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEE-EEECCCSSCCBSCE
T ss_pred ccccEEEEEeCCCCcEEECCCCccccccc-cEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCE-eeCCCCCCccccCe
Confidence 24589999988743322 11111111 22222 566666665 3 3689999987521 12211111111112
Q ss_pred EEEEeCCCCEEEEEEcCC-----eEEEEECCCCeEEEe
Q 003279 770 SCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTL 802 (834)
Q Consensus 770 svafspdg~~L~sgs~dg-----~I~Iwdl~~~~~~~l 802 (834)
++. -++..++.|+.++ .|.+||+.+.+...+
T Consensus 247 -~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 282 (302)
T 2xn4_A 247 -VCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVV 282 (302)
T ss_dssp -EEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred -EEE-ECCEEEEECCcCCCcccccEEEEcCCCCeEEEC
Confidence 222 2566666666543 589999998876654
No 319
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.44 E-value=0.074 Score=57.73 Aligned_cols=232 Identities=9% Similarity=0.056 Sum_probs=124.7
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE--EEe----ccCCCCeEEEEECCC---CCEEEEE-e--CC
Q 003279 548 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STL----EEHTQWITDVRFSPS---LSRLATS-S--AD 615 (834)
Q Consensus 548 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~--~~l----~~h~~~I~~l~fspd---g~~Latg-s--~D 615 (834)
+...-..-+.|+|.|||+++++--..|.|++++..+++.. ..+ .........|+|+|+ +.+|+.. + .+
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 3333445789999999987776655899999987655542 222 123556889999995 3444433 2 45
Q ss_pred CeEEEEecCCCC---------c-eeeeec-cCCCCeEEEEEccCCCcEEEEEe------------CCCcEEEEECCCCc-
Q 003279 616 RTVRVWDTENPD---------Y-SLRTFT-GHSTTVMSLDFHPSKEDLLCSCD------------NNSEIRYWSINNGS- 671 (834)
Q Consensus 616 g~I~IWDl~s~~---------~-~i~~~~-~h~~~V~sl~fspdg~~llasgs------------~Dg~I~lwDl~s~~- 671 (834)
..|.-|.+.... . .+..+. ........|.|.|+|..++.+|+ ..|.|.-++....-
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip 186 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA 186 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence 567767665411 1 111121 11123467999999864443332 13556656654220
Q ss_pred ------eeeEee-cCCCeeEEEEecCCCEEEEEEc--CC--eEEEEECCCC------------------eEEEEEeCCCC
Q 003279 672 ------CAGVFK-CQSGATQMRFQPRLGRILAAAI--EN--YISILDVETQ------------------VCRLKLQGHKN 722 (834)
Q Consensus 672 ------~i~~~~-~~~~i~~l~~sp~g~~ll~~s~--dg--~I~iwDl~t~------------------~~~~~l~~h~~ 722 (834)
....+. .......++|+|++. |+++.. ++ .|.+. ..+ .++..+..+..
T Consensus 187 ~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~~~~deln~i--~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ 263 (347)
T 3das_A 187 PGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFGQDTWDELNAI--KPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA 263 (347)
T ss_dssp TTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECCSSSCEEEEEE--CTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred CCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecCCCCCceeeEE--cCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence 011222 234467899999755 444443 22 23332 211 11222322223
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003279 723 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVI 783 (834)
Q Consensus 723 ~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~-~~~i~~~~~~~~~I~svafspdg~~L~sg 783 (834)
....++|. +|.+++..- .+.|....+..... .+....+......+..++..|||..+++.
T Consensus 264 ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 264 SPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp CEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred CCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence 55677776 355555444 55676667654421 11122233344678889999998654443
No 320
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.38 E-value=0.14 Score=55.63 Aligned_cols=201 Identities=14% Similarity=0.136 Sum_probs=120.3
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEe------------CCCcEEEEeCCC--CeEE-EEecc-----CCCCeEEEEECC-
Q 003279 546 QLIPASTSKVESCHFSPDGKLLATGG------------HDKKAVLWCTES--FTVK-STLEE-----HTQWITDVRFSP- 604 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~Lasgs------------~Dg~I~IWd~~t--~~~~-~~l~~-----h~~~I~~l~fsp- 604 (834)
..+++-......+.+.++|..+++++ .+|.|.++|.++ .+.. ..+.+ ..-....|.+.+
T Consensus 43 ~~i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d 122 (355)
T 3sre_A 43 NLVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID 122 (355)
T ss_dssp EECTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEEC
T ss_pred EEeCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEEC
Confidence 33444333456677888875544441 689999999873 2321 12222 123566777755
Q ss_pred -CCC-EEEEEe-C--CCeEEEEecCCCCcee---eeeccC-CCCeEEEEEccCCCcEEEEEe-----------------C
Q 003279 605 -SLS-RLATSS-A--DRTVRVWDTENPDYSL---RTFTGH-STTVMSLDFHPSKEDLLCSCD-----------------N 658 (834)
Q Consensus 605 -dg~-~Latgs-~--Dg~I~IWDl~s~~~~i---~~~~~h-~~~V~sl~fspdg~~llasgs-----------------~ 658 (834)
++. +|+++. . +.+|.+|+++...... ..+.+. -...+++.+.++|. ++++.. .
T Consensus 123 ~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~ 201 (355)
T 3sre_A 123 DDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLA 201 (355)
T ss_dssp TTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCC
T ss_pred CCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCC
Confidence 444 454443 2 5688888887543322 233322 24678999999876 444433 1
Q ss_pred CCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCC-Ce--EEEEEeCCCCCEEEEEEcC-CC
Q 003279 659 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVET-QV--CRLKLQGHKNQVHSVCWNT-SG 733 (834)
Q Consensus 659 Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t-~~--~~~~l~~h~~~I~sl~~sp-dg 733 (834)
.|.|+.+|. +++......-...+.++|+|+++.++++.. .+.|..||+.. +. ....+ ........+++++ +|
T Consensus 202 ~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G 278 (355)
T 3sre_A 202 WSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTG 278 (355)
T ss_dssp CEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTC
T ss_pred ccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCC
Confidence 245655655 343333333456789999999999888876 58999999863 32 22233 2345678899999 59
Q ss_pred CEEEEEe-CC-eEEEEEcC
Q 003279 734 EYLASVS-DE-LVRVWSIG 750 (834)
Q Consensus 734 ~~Lasgs-Dg-~I~IwDl~ 750 (834)
.+.+++. ++ .|..|+-.
T Consensus 279 ~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 279 DLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp CEEEEEESCHHHHHSCCTT
T ss_pred cEEEEecCCceEEEEECCC
Confidence 9888775 43 55555443
No 321
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.35 E-value=0.0076 Score=63.99 Aligned_cols=230 Identities=7% Similarity=0.020 Sum_probs=117.0
Q ss_pred CCCCEEEEEeCC----CcEEEEeCCCCeEEEE--eccCCCCeEEEEECCCCCEEEEEeC----C-----CeEEEEecCCC
Q 003279 562 PDGKLLATGGHD----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSA----D-----RTVRVWDTENP 626 (834)
Q Consensus 562 pdg~~Lasgs~D----g~I~IWd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~----D-----g~I~IWDl~s~ 626 (834)
-++.+++.|+.+ ..+.+||..+.+-... +.........+.+ ++.+++.|+. + ..+.+||+.+.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 356677777642 4688999887654422 1111111122222 5667777765 2 46888998876
Q ss_pred Cceeee-eccCCCCeEEEEEccCCCcEEEEEeCC-----CcEEEEECCCCceeeEeecCCC--eeEEEEecCCCEEEEEE
Q 003279 627 DYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAA 698 (834)
Q Consensus 627 ~~~i~~-~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~lwDl~s~~~i~~~~~~~~--i~~l~~sp~g~~ll~~s 698 (834)
...... ..........+.+ + ..+++.|+.+ ..+.+||+.+.+-...-..... -.+++.. ++..+++|+
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 176 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVI--D-GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGG 176 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEE--T-TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred eEeECCCCCcCccccEEEEE--C-CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeC
Confidence 532211 1111112222222 3 4466666533 4688999987764433222111 1222222 556666666
Q ss_pred cC-----CeEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCC
Q 003279 699 IE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTG 765 (834)
Q Consensus 699 ~d-----g~I~iwDl~t~~~~~~--l~~h~~~I~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~ 765 (834)
.+ ..+.+||+.+.+-... +........++.+ ++++++.|+ + ..+.+||+.+..- ..+..+....
T Consensus 177 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~p~~r 253 (308)
T 1zgk_A 177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETW-TFVAPMKHRR 253 (308)
T ss_dssp BCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE-EECCCCSSCC
T ss_pred CCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcE-EECCCCCCCc
Confidence 54 4689999987643321 1111111222222 566666665 3 4699999987521 1111111111
Q ss_pred CceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEe
Q 003279 766 NKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTL 802 (834)
Q Consensus 766 ~~I~svafspdg~~L~sgs~d-----g~I~Iwdl~~~~~~~l 802 (834)
... +++.. ++..++.|+.+ ..|.+||+.+.+...+
T Consensus 254 ~~~-~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 293 (308)
T 1zgk_A 254 SAL-GITVH-QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV 293 (308)
T ss_dssp BSC-EEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred cce-EEEEE-CCEEEEEcCcCCCcccceEEEEcCCCCEEeec
Confidence 112 22222 55666666643 3688999988776543
No 322
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.33 E-value=0.025 Score=59.99 Aligned_cols=225 Identities=8% Similarity=0.007 Sum_probs=115.3
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEE-EeccCCCCeEEEEECCCCCEEEEEeC-----C------CeEEEEecCCCCceeeee
Q 003279 566 LLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA-----D------RTVRVWDTENPDYSLRTF 633 (834)
Q Consensus 566 ~Lasgs~Dg~I~IWd~~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~-----D------g~I~IWDl~s~~~~i~~~ 633 (834)
+++.|+ ..+.+||..+.+-.. .+..........+...++.+++.|+. . ..+.+||..+.... .+
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~--~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL--GM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE--EC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE--EC
Confidence 344555 579999998876543 22222223333344457788888873 1 13778888875532 22
Q ss_pred ccCCCC--eEEEEEccCCCcEEEEEeCC--------CcEEEEECCCCceeeEeecCCC--eeEEEEecCCCEEEEEEc-C
Q 003279 634 TGHSTT--VMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI-E 700 (834)
Q Consensus 634 ~~h~~~--V~sl~fspdg~~llasgs~D--------g~I~lwDl~s~~~i~~~~~~~~--i~~l~~sp~g~~ll~~s~-d 700 (834)
.....+ -.+++.. ++.+++.|+.+ ..+.+||+.+.+-...-..... -.+++. .++..++.|+. +
T Consensus 83 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~ 159 (315)
T 4asc_A 83 PPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGS 159 (315)
T ss_dssp CCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCT
T ss_pred CCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCC
Confidence 111111 1122222 34566666632 4689999988754433222111 122222 45566667765 2
Q ss_pred -----CeEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe-CC-----eEEEEEcCCCCCceeEEEeecCCCc
Q 003279 701 -----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSCTGNK 767 (834)
Q Consensus 701 -----g~I~iwDl~t~~~~~~--l~~h~~~I~sl~~spdg~~Lasgs-Dg-----~I~IwDl~s~~~~~~i~~~~~~~~~ 767 (834)
..+.+||..+.+-... +........++.+ ++++++.|+ ++ .+.+||+.+.. ...+.........
T Consensus 160 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~ 236 (315)
T 4asc_A 160 DRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK-WAPFEAFPQERSS 236 (315)
T ss_dssp TSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE-EEEECCCSSCCBS
T ss_pred CCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe-EEECCCCCCcccc
Confidence 4699999987643221 1111111122222 566666665 43 58899988752 1122111111111
Q ss_pred eEEEEEeCCCCEEEEEEcC--------------CeEEEEECCCCeEEEe
Q 003279 768 FHSCVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTL 802 (834)
Q Consensus 768 I~svafspdg~~L~sgs~d--------------g~I~Iwdl~~~~~~~l 802 (834)
. +++. -++..+++|+.+ ..|.+||+.+.+...+
T Consensus 237 ~-~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 237 L-SLVS-LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp C-EEEE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred e-eEEE-ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 2 2222 255666666653 2578899988876544
No 323
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.33 E-value=0.022 Score=64.66 Aligned_cols=257 Identities=12% Similarity=0.092 Sum_probs=149.3
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEeccCC-------------------------CCeE--EEEECC---CCCEEEEEeC-C
Q 003279 567 LATGGHDKKAVLWCTESFTVKSTLEEHT-------------------------QWIT--DVRFSP---SLSRLATSSA-D 615 (834)
Q Consensus 567 Lasgs~Dg~I~IWd~~t~~~~~~l~~h~-------------------------~~I~--~l~fsp---dg~~Latgs~-D 615 (834)
+.+|+..|.|+|+-+.+++.+..+...+ +... .+.+.. ||++|+.-.. .
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 6788899999999999999988874211 1111 222321 5777877764 5
Q ss_pred CeEEEEecCCCCceeeeeccCCCCeEEEEEc--cCCCcEEEEEe------CCCcE------------EEEECCCCceeeE
Q 003279 616 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFH--PSKEDLLCSCD------NNSEI------------RYWSINNGSCAGV 675 (834)
Q Consensus 616 g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fs--pdg~~llasgs------~Dg~I------------~lwDl~s~~~i~~ 675 (834)
..|-..+++.-+............+.+++|- |+-.++++.+- .||.. ...|..+.+....
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q 232 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ 232 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence 6777778876543222223345677888876 56555554331 23221 1123334444333
Q ss_pred eecCCCeeEEEEecCCCEEEEEEcCC---------------eEEEEECCC-------C--e-----EEEEEeC-------
Q 003279 676 FKCQSGATQMRFQPRLGRILAAAIEN---------------YISILDVET-------Q--V-----CRLKLQG------- 719 (834)
Q Consensus 676 ~~~~~~i~~l~~sp~g~~ll~~s~dg---------------~I~iwDl~t-------~--~-----~~~~l~~------- 719 (834)
+........+...+++++.++.+.+. .+.++++.. + + -+..+.+
T Consensus 233 v~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~~ 312 (638)
T 3sbq_A 233 VIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGKD 312 (638)
T ss_dssp EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTBC
T ss_pred EEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccccC
Confidence 33344555566677778777776522 355555421 0 0 0111211
Q ss_pred --------CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC---------CCceeEEEeecCCCceEEEEEeCCCCEE
Q 003279 720 --------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG---------SKGECIHELSCTGNKFHSCVFHPTFPSL 780 (834)
Q Consensus 720 --------h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~---------~~~~~i~~~~~~~~~I~svafspdg~~L 780 (834)
-......+.++|||+++++++ +.++.|+|++.. ....++..-....-.....+|.++|. .
T Consensus 313 ~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~-a 391 (638)
T 3sbq_A 313 SKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGN-A 391 (638)
T ss_dssp CSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSE-E
T ss_pred CceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCc-e
Confidence 123345788999999999988 889999999842 11122222222355667889999994 4
Q ss_pred EEE-EcCCeEEEEECCCC----------eEE-EeccCCCCeEEEEE------eCCCCEEEEEe
Q 003279 781 LVI-GCYETLELWNMTEN----------KTL-TLSAHDKLVSSLAA------STVNGMVASAS 825 (834)
Q Consensus 781 ~sg-s~dg~I~Iwdl~~~----------~~~-~l~~h~~~V~~laf------spdg~~LaSgs 825 (834)
++. --|..|..|++... .++ ++.-|-. +-.+.- .+||++|++.+
T Consensus 392 YTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 392 YTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEE
T ss_pred EeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEec
Confidence 444 46889999998653 233 3444433 333332 57888888875
No 324
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.32 E-value=0.01 Score=62.51 Aligned_cols=213 Identities=12% Similarity=0.108 Sum_probs=106.8
Q ss_pred CCCEEEEEe-CC-----CeEEEEecCCCCceeee-eccCCCCeEEEEEccCCCcEEEEEeCC-----CcEEEEECCCCc-
Q 003279 605 SLSRLATSS-AD-----RTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGS- 671 (834)
Q Consensus 605 dg~~Latgs-~D-----g~I~IWDl~s~~~~i~~-~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~lwDl~s~~- 671 (834)
++.+++.|+ .+ ..+.+||+.+....... +.........+.+ + +.+++.|+.+ ..+.+||+.+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~-~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL--H-DRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE--C-CEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 344555555 22 36888898875532211 1111111222222 2 4567677654 468999998876
Q ss_pred --eeeEeecC--CCeeEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEE--EEeCCCCCEEEEEEcCCCCEEEEEe
Q 003279 672 --CAGVFKCQ--SGATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS 740 (834)
Q Consensus 672 --~i~~~~~~--~~i~~l~~sp~g~~ll~~s~d-----g~I~iwDl~t~~~~~--~l~~h~~~I~sl~~spdg~~Lasgs 740 (834)
....-... ..-.+++. .++..+++|+.+ ..+.+||+.+.+-.. .+........++.+ ++++++.|+
T Consensus 91 ~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 167 (301)
T 2vpj_A 91 GVWYSVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGG 167 (301)
T ss_dssp CCCEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECC
T ss_pred CeeEECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECC
Confidence 33332211 11122222 255666666643 468999998764332 22211111122222 566666665
Q ss_pred -C-----CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEeccCCC--
Q 003279 741 -D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDK-- 807 (834)
Q Consensus 741 -D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d-----g~I~Iwdl~~~~~~~l~~h~~-- 807 (834)
+ ..+.+||+.+..- ..+..+.........+.+ ++..+++|+.+ ..|.+||+.+.+...+.....
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 244 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHW-TNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPR 244 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCC
T ss_pred CCCCcccceEEEEeCCCCcE-EeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcc
Confidence 3 3689999887621 112111111111122222 45556666653 479999999887664432111
Q ss_pred CeEEEEEeCCCCEEEEEecC
Q 003279 808 LVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 808 ~V~~lafspdg~~LaSgs~D 827 (834)
.-.+++ .-++++++.|+.+
T Consensus 245 ~~~~~~-~~~~~i~v~GG~~ 263 (301)
T 2vpj_A 245 CYVGAT-VLRGRLYAIAGYD 263 (301)
T ss_dssp BSCEEE-EETTEEEEECCBC
T ss_pred cceeEE-EECCEEEEEcCcC
Confidence 111222 2367777787765
No 325
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.31 E-value=7.2e-05 Score=90.13 Aligned_cols=14 Identities=21% Similarity=0.207 Sum_probs=2.4
Q ss_pred ccCCCCeEEEEEeC
Q 003279 803 SAHDKLVSSLAAST 816 (834)
Q Consensus 803 ~~h~~~V~~lafsp 816 (834)
..|-.-+..+.|.+
T Consensus 706 SDH~pV~a~f~l~~ 719 (727)
T 4b8c_D 706 SDHIPLLARFEFMK 719 (727)
T ss_dssp SSBCC---------
T ss_pred CCceeEEEEEEEec
Confidence 34555555555544
No 326
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.30 E-value=0.019 Score=60.61 Aligned_cols=211 Identities=10% Similarity=0.042 Sum_probs=107.4
Q ss_pred CEEEEEeC--CCeEEEEecCCCCceeee-eccCCCCeEEEEEccCCCcEEEEEeCC----CcEEEEECCCCceeeEeecC
Q 003279 607 SRLATSSA--DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFKCQ 679 (834)
Q Consensus 607 ~~Latgs~--Dg~I~IWDl~s~~~~i~~-~~~h~~~V~sl~fspdg~~llasgs~D----g~I~lwDl~s~~~i~~~~~~ 679 (834)
.+++.|+. ...+.+||..+....... ..........+.+ ++.+++.|+.+ ..+.+||+.+.+....-...
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 35555654 357889998876542211 1111112222222 24577777654 57889999887654433222
Q ss_pred CC--eeEEEEecCCCEEEEEEcC------CeEEEEECCCCeEEEEEeCCCC-CEEEEEEcCCCCEEEEEe-C--------
Q 003279 680 SG--ATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS-D-------- 741 (834)
Q Consensus 680 ~~--i~~l~~sp~g~~ll~~s~d------g~I~iwDl~t~~~~~~l~~h~~-~I~sl~~spdg~~Lasgs-D-------- 741 (834)
.. -.+++ .-++..+++|+.+ ..+.+||..+.+-...-..... .-.+++. -++++++.|+ +
T Consensus 90 ~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~ 167 (306)
T 3ii7_A 90 TPRDSLAAC-AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRV 167 (306)
T ss_dssp SCCBSCEEE-EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEE
T ss_pred ccccceeEE-EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccc
Confidence 11 12222 2255666677654 4699999988753322111111 1112222 2566666654 2
Q ss_pred -CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEeccCC---CCeEEE
Q 003279 742 -ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHD---KLVSSL 812 (834)
Q Consensus 742 -g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d-----g~I~Iwdl~~~~~~~l~~h~---~~V~~l 812 (834)
..+.+||+.+..- ..+..+...... .+++.. ++..++.|+.+ ..+.+||+.+.+...+.... ....++
T Consensus 168 ~~~~~~yd~~~~~W-~~~~~~p~~r~~-~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 244 (306)
T 3ii7_A 168 LNSCEVYDPATETW-TELCPMIEARKN-HGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCA 244 (306)
T ss_dssp CCCEEEEETTTTEE-EEECCCSSCCBS-CEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEE
T ss_pred cceEEEeCCCCCeE-EECCCccchhhc-ceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEE
Confidence 3488999887621 112111111111 222222 55556665543 36899999988766443211 122222
Q ss_pred EEeCCCCEEEEEecC
Q 003279 813 AASTVNGMVASASHD 827 (834)
Q Consensus 813 afspdg~~LaSgs~D 827 (834)
.+ ++++++.|+.+
T Consensus 245 ~~--~~~i~v~GG~~ 257 (306)
T 3ii7_A 245 AV--GSIVYVLAGFQ 257 (306)
T ss_dssp EE--TTEEEEEECBC
T ss_pred EE--CCEEEEEeCcC
Confidence 22 67788888755
No 327
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.29 E-value=0.059 Score=57.39 Aligned_cols=234 Identities=4% Similarity=-0.080 Sum_probs=135.3
Q ss_pred cCCCCEEEEEe--CCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC--------------CeEEEEecC
Q 003279 561 SPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--------------RTVRVWDTE 624 (834)
Q Consensus 561 Spdg~~Lasgs--~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D--------------g~I~IWDl~ 624 (834)
+.+|.+|+... .++.|+..+.+... ...+... . +--+++++.+|+.+... ..|+..+++
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 35677777764 25666666655433 3333221 1 33456788888777543 467777777
Q ss_pred CCCceeeeeccCCCCeEEEEEccCCCcEEEEE---eCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc-C
Q 003279 625 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC---DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-E 700 (834)
Q Consensus 625 s~~~~i~~~~~h~~~V~sl~fspdg~~llasg---s~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~-d 700 (834)
.... ..+... . +..|+++++.++++- ..+..|+..++........... .+ ..++++++.|+..+. .
T Consensus 97 g~~~--~~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~--~~--~~~~~~g~~iy~t~~g~ 166 (302)
T 3s25_A 97 GHGS--TVLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH--YL--FTCNTSDRYFYYNNPKN 166 (302)
T ss_dssp SCCC--EEEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESS--CC--CCSEEETTEEEEECTTT
T ss_pred CCcc--eEeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCC--Cc--eEeeEECCEEEEEeCCC
Confidence 6542 223221 1 236677888777665 3455777778775443333332 22 456788888887776 5
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C--CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003279 701 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D--ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 777 (834)
Q Consensus 701 g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-D--g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg 777 (834)
..|++.++..+.....+.+ ... ..++|++.+|+-.. + ..|..-++..... ..+. ...+ ..|+|++
T Consensus 167 ~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~----~~Lt--~~~~--~~~~~~g 234 (302)
T 3s25_A 167 GQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP----VVLT--EANI--EHYNVYG 234 (302)
T ss_dssp CCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC----EECS--CSCE--EEEEEET
T ss_pred ceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe----EEEe--CCCc--ceEEECC
Confidence 7899999987765444432 222 34669999888776 3 3677777765532 1121 1223 3488889
Q ss_pred CEEEEEEc--CCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEe
Q 003279 778 PSLLVIGC--YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 778 ~~L~sgs~--dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs 825 (834)
..|+.+.. .+.|...+++......+... .+..+ ++.+.+|+-..
T Consensus 235 ~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~--~~~~i--~i~~d~Iy~td 280 (302)
T 3s25_A 235 SLIFYQRGGDNPALCVVKNDGTGFKELAKG--EFCNI--NVTSQYVYFTD 280 (302)
T ss_dssp TEEEEEECSSSCEEEEEETTSCCCEEEEES--CEEEE--EECSSEEEEEE
T ss_pred CEEEEEECCCCcEEEEEECCCCccEEeeCC--ccceE--EEeCCEEEEEE
Confidence 88887643 35788888877554433322 23333 34455554443
No 328
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.22 E-value=8.6e-05 Score=89.48 Aligned_cols=9 Identities=11% Similarity=0.261 Sum_probs=3.4
Q ss_pred CCcEEEEeC
Q 003279 573 DKKAVLWCT 581 (834)
Q Consensus 573 Dg~I~IWd~ 581 (834)
+|...+|..
T Consensus 487 ~G~AI~y~~ 495 (727)
T 4b8c_D 487 DGCCIFFKR 495 (727)
T ss_dssp CCCEEEC--
T ss_pred ccEEEEEEc
Confidence 444555443
No 329
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.22 E-value=0.018 Score=60.58 Aligned_cols=212 Identities=9% Similarity=0.063 Sum_probs=105.4
Q ss_pred CEEEEEeCC----CeEEEEecCCCCceeee-eccCCCCeEEEEEccCCCcEEEEEeCC-----CcEEEEECCCCceeeEe
Q 003279 607 SRLATSSAD----RTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVF 676 (834)
Q Consensus 607 ~~Latgs~D----g~I~IWDl~s~~~~i~~-~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~lwDl~s~~~i~~~ 676 (834)
.+++.|+.+ ..+.+||+.+....... +......- +++.. ++.+++.|+.+ ..+.+||..+.+....-
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA-GMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccc-eEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 344555432 35788888765432211 11111111 22222 34577677654 36889999887644433
Q ss_pred ecCCC--eeEEEEecCCCEEEEEEcCC-----eEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe-C-----
Q 003279 677 KCQSG--ATQMRFQPRLGRILAAAIEN-----YISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D----- 741 (834)
Q Consensus 677 ~~~~~--i~~l~~sp~g~~ll~~s~dg-----~I~iwDl~t~~~~~~--l~~h~~~I~sl~~spdg~~Lasgs-D----- 741 (834)
..... -.+++. .++..+++|+.++ .+.+||+.+.+-... +...... .+++. -++++++.|+ +
T Consensus 94 ~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~ 170 (302)
T 2xn4_A 94 NMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS-VGVGV-VGGLLYAVGGYDVASRQ 170 (302)
T ss_dssp CCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEECCEETTTTE
T ss_pred CCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC-ceEEE-ECCEEEEEeCCCCCCCc
Confidence 22111 122222 2556677777653 588999987753322 1111111 12222 2566666654 2
Q ss_pred --CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEeccCCCC--eEEE
Q 003279 742 --ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDKL--VSSL 812 (834)
Q Consensus 742 --g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d-----g~I~Iwdl~~~~~~~l~~h~~~--V~~l 812 (834)
..+.+||+.+..- ..+..+....... +++. -++..+++|+.+ ..+.+||+.+++...+...... -.++
T Consensus 171 ~~~~~~~yd~~~~~W-~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~ 247 (302)
T 2xn4_A 171 CLSTVECYNATTNEW-TYIAEMSTRRSGA-GVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGV 247 (302)
T ss_dssp ECCCEEEEETTTTEE-EEECCCSSCCBSC-EEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred cccEEEEEeCCCCcE-EECCCCccccccc-cEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeE
Confidence 2588999887521 1121121111112 2222 255666666654 3799999998876644322111 1122
Q ss_pred EEeCCCCEEEEEecCC
Q 003279 813 AASTVNGMVASASHDK 828 (834)
Q Consensus 813 afspdg~~LaSgs~DG 828 (834)
+ .-++++++.|+.++
T Consensus 248 ~-~~~~~i~v~GG~~~ 262 (302)
T 2xn4_A 248 C-AVNGLLYVVGGDDG 262 (302)
T ss_dssp E-EETTEEEEECCBCS
T ss_pred E-EECCEEEEECCcCC
Confidence 2 23677778887654
No 330
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.16 E-value=0.53 Score=59.25 Aligned_cols=242 Identities=13% Similarity=0.053 Sum_probs=139.8
Q ss_pred CcEEEEeCCCCeEEEEeccC-CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCC---
Q 003279 574 KKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK--- 649 (834)
Q Consensus 574 g~I~IWd~~t~~~~~~l~~h-~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg--- 649 (834)
..|++.+.+....+..+... ...|...+.+. ..++.++ ++.|.+++++.+.........-...|.|+++.+..
T Consensus 492 ~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~ 568 (1158)
T 3ei3_A 492 ASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSN 568 (1158)
T ss_dssp SCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSST
T ss_pred CEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCc
Confidence 45777777665566666533 34577777653 4666665 67888888875432222222345689999998643
Q ss_pred --CcEEEEEeC-CCcEEEEECCCCceeeEeecCC--CeeEEEEec--CCCEEEEEEcCCeEEEEEC--CCCeEEE---EE
Q 003279 650 --EDLLCSCDN-NSEIRYWSINNGSCAGVFKCQS--GATQMRFQP--RLGRILAAAIENYISILDV--ETQVCRL---KL 717 (834)
Q Consensus 650 --~~llasgs~-Dg~I~lwDl~s~~~i~~~~~~~--~i~~l~~sp--~g~~ll~~s~dg~I~iwDl--~t~~~~~---~l 717 (834)
..+++.|.. |++|+|+++.+.+.+....... ...++.+.. ...+++++-.||.+..+.+ .++.... .+
T Consensus 569 ~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~ 648 (1158)
T 3ei3_A 569 GLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVT 648 (1158)
T ss_dssp TCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEE
T ss_pred ccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEE
Confidence 246777775 9999999999877665554422 444554432 3357888888998765554 4443322 22
Q ss_pred eCCCCCEEEEEEcCCC-CEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCce-EEEEEeCCC--CEEEEEEcCCeEEEEE
Q 003279 718 QGHKNQVHSVCWNTSG-EYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF-HSCVFHPTF--PSLLVIGCYETLELWN 793 (834)
Q Consensus 718 ~~h~~~I~sl~~spdg-~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I-~svafspdg--~~L~sgs~dg~I~Iwd 793 (834)
-+ ..++.-..+...+ ..++++++.-..+|.-... -.+..+. ...+ ..+.|+... .-++.+ .++.++|..
T Consensus 649 LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~---l~~s~l~--~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~ 721 (1158)
T 3ei3_A 649 LG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHK---LVFSNVN--LKEVNYMCPLNSDGYPDSLALA-NNSTLTIGT 721 (1158)
T ss_dssp CC-SSCCEEEEEESSSCEEEEEESSSCEEEEESSSS---EEEEEBS--SSCCCEEEEECCSSSTTEEEEE-CSSCEEEEE
T ss_pred cC-CCceEEEEEeeCCceeEEEECCCCEEEEEcCCc---eEEeccC--hHHhceEeccCcccCCCcEEEE-cCCceEEEE
Confidence 23 3344444443333 3455555665555554321 1222222 2223 344565432 334443 445688887
Q ss_pred CCCCeEE--EeccCCCCeEEEEEeCCCCEEEEEe
Q 003279 794 MTENKTL--TLSAHDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 794 l~~~~~~--~l~~h~~~V~~lafspdg~~LaSgs 825 (834)
+.+.... ....-...+..++++|+.+.++.+.
T Consensus 722 i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~ 755 (1158)
T 3ei3_A 722 IDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLS 755 (1158)
T ss_dssp ECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEE
T ss_pred ecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEE
Confidence 7543322 3334557899999999988766554
No 331
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.16 E-value=0.16 Score=57.28 Aligned_cols=156 Identities=12% Similarity=0.159 Sum_probs=89.2
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCce-eeeecc------CCCCeEEEEEccC---CCcEEEEEeC-----
Q 003279 594 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTG------HSTTVMSLDFHPS---KEDLLCSCDN----- 658 (834)
Q Consensus 594 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~-i~~~~~------h~~~V~sl~fspd---g~~llasgs~----- 658 (834)
-...+.|+|.|+|+++++-...+.|++++..++... +..+.. ....+..|+|+|+ +..++++-+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345679999999987776544457888876544321 222211 2356779999996 5555555432
Q ss_pred -------CCcEEEEECCCC--c---eeeEe---ec--CCCeeEEEEecCCCEEEEEEcC---------------------
Q 003279 659 -------NSEIRYWSINNG--S---CAGVF---KC--QSGATQMRFQPRLGRILAAAIE--------------------- 700 (834)
Q Consensus 659 -------Dg~I~lwDl~s~--~---~i~~~---~~--~~~i~~l~~sp~g~~ll~~s~d--------------------- 700 (834)
...|..|++..+ . ....+ .. ......++|.|+|..+++.+..
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~ 185 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQ 185 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHH
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCccccccccccccccccc
Confidence 235666665432 1 11112 11 2347889999999877765532
Q ss_pred -----------CeEEEEECCCCe----------EEEEE-eCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcC
Q 003279 701 -----------NYISILDVETQV----------CRLKL-QGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIG 750 (834)
Q Consensus 701 -----------g~I~iwDl~t~~----------~~~~l-~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~ 750 (834)
|.|.-++..... ....+ .+| .....++|+++|.++++-. ++.-.|.-+.
T Consensus 186 ~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d~g~~~~dein~i~ 258 (454)
T 1cru_A 186 ELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSEQGPNSDDEINLIV 258 (454)
T ss_dssp HHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEEECSSSCEEEEECC
T ss_pred cccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEecCCCCCeEEEEec
Confidence 345555554320 11111 233 3567899999988777654 4434444443
No 332
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.15 E-value=0.058 Score=57.22 Aligned_cols=227 Identities=7% Similarity=-0.001 Sum_probs=112.3
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEE-EeccCCCCeEEEEECCCCCEEEEEeC----CC-------eEEEEecCCCCceeee-
Q 003279 566 LLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA----DR-------TVRVWDTENPDYSLRT- 632 (834)
Q Consensus 566 ~Lasgs~Dg~I~IWd~~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~----Dg-------~I~IWDl~s~~~~i~~- 632 (834)
+++.|+. .+.+||..+.+-.. .+..........+...++.+++.|+. ++ .+.+||..+.......
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 3444443 47889988876543 22211122223334457788888873 12 2778888765542211
Q ss_pred eccCCCCeEEEEEccCCCcEEEEEeCC-------CcEEEEECCCCceeeEeecCCC--eeEEEEecCCCEEEEEEc----
Q 003279 633 FTGHSTTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI---- 699 (834)
Q Consensus 633 ~~~h~~~V~sl~fspdg~~llasgs~D-------g~I~lwDl~s~~~i~~~~~~~~--i~~l~~sp~g~~ll~~s~---- 699 (834)
..........+.+ + +.+++.|+.+ ..+.+||+.+.+-...-..... -.+++. .++..++.|+.
T Consensus 96 ~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~ 171 (318)
T 2woz_A 96 LPSARCLFGLGEV--D-DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDK 171 (318)
T ss_dssp BSSCBCSCEEEEE--T-TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSS
T ss_pred CCccccccceEEE--C-CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCC
Confidence 1111111122222 3 4566666643 3588899987765443222221 112222 45566666654
Q ss_pred --CCeEEEEECCCCeEEEEEeC-CCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCCCceEE
Q 003279 700 --ENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHS 770 (834)
Q Consensus 700 --dg~I~iwDl~t~~~~~~l~~-h~~~I~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I~s 770 (834)
...+.+||+.+.+-...-.. ....-.+++.. ++++++.|+ + ..+.+||+.+..- ..+..+....... +
T Consensus 172 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~-~ 248 (318)
T 2woz_A 172 KCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKW-EVMTEFPQERSSI-S 248 (318)
T ss_dssp CBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCE-EECCCCSSCCBSC-E
T ss_pred CccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeE-EECCCCCCcccce-E
Confidence 24699999988753322111 11111122222 566666665 2 2578899887521 2222222111111 2
Q ss_pred EEEeCCCCEEEEEEcC--------------CeEEEEECCCCeEEEe
Q 003279 771 CVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTL 802 (834)
Q Consensus 771 vafspdg~~L~sgs~d--------------g~I~Iwdl~~~~~~~l 802 (834)
++ .-++..++.|+.+ ..|.+||+.+.+...+
T Consensus 249 ~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 249 LV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EE-EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EE-EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 22 2245555665543 3688999988776544
No 333
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.12 E-value=0.075 Score=56.57 Aligned_cols=177 Identities=8% Similarity=0.024 Sum_probs=109.7
Q ss_pred EEEEcCCCCEEEEEeCC--------------CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEe--C--CCeE
Q 003279 557 SCHFSPDGKLLATGGHD--------------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS--A--DRTV 618 (834)
Q Consensus 557 sl~fSpdg~~Lasgs~D--------------g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs--~--Dg~I 618 (834)
+--|+++|++|+.+... ..|+..+++..+... +... . +..|++++++|+-.. . ...|
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD--P--CIYASLIGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS--C--EEEEEEETTEEEEEEESSSSCEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC--C--ccEEEEeCCEEEEEeecCCCCceE
Confidence 34567889988877643 367777777665333 3221 1 235677888888776 2 3456
Q ss_pred EEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEE
Q 003279 619 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 698 (834)
Q Consensus 619 ~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s 698 (834)
+..+++... ...+..+.. ..|+++++.++++......|.+.++..+.....+. ... ...++|++++|+...
T Consensus 132 y~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~-~~~~~P~g~~iy~t~ 202 (302)
T 3s25_A 132 YRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--CNC-YKPVVLDDTNVYYMD 202 (302)
T ss_dssp EEEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--SCE-EEEEEEETTEEEEEE
T ss_pred EEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--CCc-cceeeecCCEEEEEE
Confidence 666665433 344443432 45677888888776656789999988766554433 233 234679999998887
Q ss_pred cC--CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCC
Q 003279 699 IE--NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSG 752 (834)
Q Consensus 699 ~d--g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs---Dg~I~IwDl~s~ 752 (834)
.. ..|..-++..... ..+. ...+ ..|+|++.+|+.+. .+.|...++...
T Consensus 203 ~~~~~~I~~~~ldG~~~-~~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 203 VNRDNAIVHVNINNPNP-VVLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp GGGTTEEEEECSSSCCC-EECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred cCCCcEEEEEECCCCCe-EEEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 64 3677777776542 2332 2233 34778888888764 346777777654
No 334
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.95 E-value=0.049 Score=60.23 Aligned_cols=141 Identities=18% Similarity=0.192 Sum_probs=93.4
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEEeCC----CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCc---------e
Q 003279 690 RLGRILAAAIENYISILDVETQVCRLKLQGH----KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKG---------E 756 (834)
Q Consensus 690 ~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h----~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~---------~ 756 (834)
++..++++ .++.|+.-++......+.+... -..|..+..+|+|.+||..++..|.|..+..+... .
T Consensus 31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~ 109 (452)
T 3pbp_A 31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAF 109 (452)
T ss_dssp TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTT
T ss_pred CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccccc
Confidence 33444333 3466777776643323333322 22578899999999999999999999999843210 1
Q ss_pred eEEEeec------CCCceEEEEEeCCC---CEEEEEEcCCeEEEEECCCCe--EE---------EeccCCCCeEEEEEeC
Q 003279 757 CIHELSC------TGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENK--TL---------TLSAHDKLVSSLAAST 816 (834)
Q Consensus 757 ~i~~~~~------~~~~I~svafspdg---~~L~sgs~dg~I~Iwdl~~~~--~~---------~l~~h~~~V~~lafsp 816 (834)
....+.. ...+|..+.|||-+ ..|++-..|+.|++||+.... +. ........|.+++|..
T Consensus 110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~ 189 (452)
T 3pbp_A 110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK 189 (452)
T ss_dssp EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT
T ss_pred ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC
Confidence 1222322 24679999999964 689999999999999997622 11 1122336789999999
Q ss_pred CCCEEEEEe--cCCcEE
Q 003279 817 VNGMVASAS--HDKCVK 831 (834)
Q Consensus 817 dg~~LaSgs--~DG~I~ 831 (834)
++-.|...+ .+|.|+
T Consensus 190 ~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 190 DGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp TSSCEEEEECTTSCEEE
T ss_pred CCcEEEEEecCCCCCEE
Confidence 877666644 778775
No 335
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.94 E-value=0.018 Score=62.29 Aligned_cols=231 Identities=8% Similarity=-0.057 Sum_probs=113.7
Q ss_pred CCCEEEEEeCC-CcEEEEeCCC--Ce--EEEEec-cCCCCeEEEEECCCCCEEEEEeC-C---------CeEEEEecCCC
Q 003279 563 DGKLLATGGHD-KKAVLWCTES--FT--VKSTLE-EHTQWITDVRFSPSLSRLATSSA-D---------RTVRVWDTENP 626 (834)
Q Consensus 563 dg~~Lasgs~D-g~I~IWd~~t--~~--~~~~l~-~h~~~I~~l~fspdg~~Latgs~-D---------g~I~IWDl~s~ 626 (834)
++++++.|+.+ ..+.+||..+ .+ .+..+. .......++.+ ++++++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 56666777643 5688899863 22 222222 11111222333 5667777765 2 46889999876
Q ss_pred Cceeeeecc-CCCCeEEEEEccCCCcEEEEEeCC---------------------------------------CcEEEEE
Q 003279 627 DYSLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNN---------------------------------------SEIRYWS 666 (834)
Q Consensus 627 ~~~i~~~~~-h~~~V~sl~fspdg~~llasgs~D---------------------------------------g~I~lwD 666 (834)
......... ....-.+++. .+ ..+++.|+.+ ..+.+||
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFV-HN-GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEE-ET-TEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred cEEECCCCCCcccccceEEE-EC-CEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 542221111 1111112222 23 4577677654 5789999
Q ss_pred CCCCceeeEeecC--CCe-eEEEEecCCCEEEEEEc------CCeEEEEEC--CCCeEEE--EEeCCCCCEEEEEEcCCC
Q 003279 667 INNGSCAGVFKCQ--SGA-TQMRFQPRLGRILAAAI------ENYISILDV--ETQVCRL--KLQGHKNQVHSVCWNTSG 733 (834)
Q Consensus 667 l~s~~~i~~~~~~--~~i-~~l~~sp~g~~ll~~s~------dg~I~iwDl--~t~~~~~--~l~~h~~~I~sl~~spdg 733 (834)
+.+.+-...-... ... .+++.. ++..+++|+. ...+.+||+ .+.+-.. .+........+.+...++
T Consensus 175 ~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 253 (357)
T 2uvk_A 175 PSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISND 253 (357)
T ss_dssp TTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETT
T ss_pred CCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECC
Confidence 9887655443322 122 233333 4455666553 346788887 4332211 111111111111222355
Q ss_pred CEEEEEe-C----------------------CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---
Q 003279 734 EYLASVS-D----------------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE--- 787 (834)
Q Consensus 734 ~~Lasgs-D----------------------g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg--- 787 (834)
++++.|+ + ..+.+||+.+.. ...+..+...... ..++.-++..++.|+.++
T Consensus 254 ~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~ 330 (357)
T 2uvk_A 254 SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK-WDKSGELSQGRAY--GVSLPWNNSLLIIGGETAGGK 330 (357)
T ss_dssp EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----CEEEEECSSCCBS--SEEEEETTEEEEEEEECGGGC
T ss_pred EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc-eeeCCCCCCCccc--ceeEEeCCEEEEEeeeCCCCC
Confidence 6666655 2 257899988753 2333333322222 222334667777787643
Q ss_pred ---eEEEEECCCCeEEE
Q 003279 788 ---TLELWNMTENKTLT 801 (834)
Q Consensus 788 ---~I~Iwdl~~~~~~~ 801 (834)
.|.++++++++.+.
T Consensus 331 ~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 331 AVTDSVLITVKDNKVTV 347 (357)
T ss_dssp EEEEEEEEEC-CCSCEE
T ss_pred EeeeEEEEEEcCcEeEe
Confidence 57777998888773
No 336
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.86 E-value=0.1 Score=55.28 Aligned_cols=210 Identities=10% Similarity=0.019 Sum_probs=105.1
Q ss_pred EEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeC-----C------CcEEEEECCCCceeeEe
Q 003279 608 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----N------SEIRYWSINNGSCAGVF 676 (834)
Q Consensus 608 ~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~-----D------g~I~lwDl~s~~~i~~~ 676 (834)
+++.|+ ..+.+||..+......................+ +.+++.|+. . ..+.+||..+.+....-
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKE-NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTT-CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEEC-CEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 344554 579999999877643222222122222222334 446666663 1 13788999887654332
Q ss_pred ecCCC--eeEEEEecCCCEEEEEEcC--------CeEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe--C-
Q 003279 677 KCQSG--ATQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS--D- 741 (834)
Q Consensus 677 ~~~~~--i~~l~~sp~g~~ll~~s~d--------g~I~iwDl~t~~~~~~--l~~h~~~I~sl~~spdg~~Lasgs--D- 741 (834)
..... -.+++.. ++..+++|+.+ ..+.+||..+.+-... +...... .+++. -++++++.|+ +
T Consensus 84 ~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 84 PLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLS-HMDLVYVIGGKGSD 160 (315)
T ss_dssp CBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCBCTT
T ss_pred CCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEE-ECCEEEEEeCCCCC
Confidence 22211 1122222 45556666632 4699999988743221 1111111 12222 3556666655 2
Q ss_pred ----CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCeEEEeccCCC--CeE
Q 003279 742 ----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTLSAHDK--LVS 810 (834)
Q Consensus 742 ----g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg-----~I~Iwdl~~~~~~~l~~h~~--~V~ 810 (834)
..+.+||+.+..- ..+..+........ ++. -++..++.|+.++ .+.+||+.+.+...+..... .-.
T Consensus 161 ~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~-~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 237 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEW-KELAPMQTARSLFG-ATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSL 237 (315)
T ss_dssp SCBCCCEEEEETTTTEE-EECCCCSSCCBSCE-EEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSC
T ss_pred CcccceEEEEeCCCCeE-EECCCCCCchhceE-EEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccce
Confidence 3689999887521 11111111111112 222 2566667776654 68999999887665432211 111
Q ss_pred EEEEeCCCCEEEEEecC
Q 003279 811 SLAASTVNGMVASASHD 827 (834)
Q Consensus 811 ~lafspdg~~LaSgs~D 827 (834)
+++. -++++++.|+.+
T Consensus 238 ~~~~-~~~~l~v~GG~~ 253 (315)
T 4asc_A 238 SLVS-LVGTLYAIGGFA 253 (315)
T ss_dssp EEEE-ETTEEEEEEEEE
T ss_pred eEEE-ECCEEEEECCcc
Confidence 2222 356777777764
No 337
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.78 E-value=0.1 Score=55.36 Aligned_cols=203 Identities=11% Similarity=0.036 Sum_probs=99.9
Q ss_pred eEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeC----CC-------cEEEEECCCCceeeEeecCC--Cee
Q 003279 617 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN----NS-------EIRYWSINNGSCAGVFKCQS--GAT 683 (834)
Q Consensus 617 ~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~----Dg-------~I~lwDl~s~~~i~~~~~~~--~i~ 683 (834)
.+.+||..+......................+ +.+++.|+. ++ .+.+||..+.+....-.... .-.
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQ-NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSS-SCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEEC-CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 48899998876543222211111222222333 446666662 11 27788988776543322211 122
Q ss_pred EEEEecCCCEEEEEEcC-------CeEEEEECCCCeEEEEEeCCCCCE--EEEEEcCCCCEEEEEe--C-----CeEEEE
Q 003279 684 QMRFQPRLGRILAAAIE-------NYISILDVETQVCRLKLQGHKNQV--HSVCWNTSGEYLASVS--D-----ELVRVW 747 (834)
Q Consensus 684 ~l~~sp~g~~ll~~s~d-------g~I~iwDl~t~~~~~~l~~h~~~I--~sl~~spdg~~Lasgs--D-----g~I~Iw 747 (834)
+++.. ++..+++|+.+ ..+.+||..+.+-... .....+. .+++. .++++++.|+ + ..+.+|
T Consensus 104 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~y 180 (318)
T 2woz_A 104 GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV-KNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIY 180 (318)
T ss_dssp EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEE-CCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEE
T ss_pred ceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeEC-CCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEE
Confidence 22222 55667777754 3588999987653322 1111111 12222 3566666654 2 258999
Q ss_pred EcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEeccCCCC--eEEEEEeCCCCE
Q 003279 748 SIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDKL--VSSLAASTVNGM 820 (834)
Q Consensus 748 Dl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d-----g~I~Iwdl~~~~~~~l~~h~~~--V~~lafspdg~~ 820 (834)
|+.+..- ..+......... .+++. -++..++.|+.+ ..+.+||+.+.+...+...... -.+++ ..++++
T Consensus 181 d~~~~~W-~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i 256 (318)
T 2woz_A 181 NPKKGDW-KDLAPMKTPRSM-FGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV-SLAGSL 256 (318)
T ss_dssp ETTTTEE-EEECCCSSCCBS-CEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE-EETTEE
T ss_pred cCCCCEE-EECCCCCCCccc-ceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE-EECCEE
Confidence 9987521 112111111111 22222 255666666643 3688999998876644322111 11222 235677
Q ss_pred EEEEecC
Q 003279 821 VASASHD 827 (834)
Q Consensus 821 LaSgs~D 827 (834)
++.|+.+
T Consensus 257 ~v~GG~~ 263 (318)
T 2woz_A 257 YAIGGFA 263 (318)
T ss_dssp EEECCBC
T ss_pred EEECCee
Confidence 7777754
No 338
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.021 Score=61.80 Aligned_cols=193 Identities=6% Similarity=-0.037 Sum_probs=104.0
Q ss_pred CEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEE--ccCCCcEEEEE-eCCCcEEEEECCCCceeeEeecCCCee
Q 003279 607 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF--HPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGAT 683 (834)
Q Consensus 607 ~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~f--spdg~~llasg-s~Dg~I~lwDl~s~~~i~~~~~~~~i~ 683 (834)
.+++.++.||.|+-+|..+++.....-.....++....- .+.+..+++.. ..||.|..++..+|.....+.....+.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 478899999999999998877533332221122222110 01122344443 579999999999886655554322111
Q ss_pred --EEEEe-----------cCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC--CC-----EEEEEEc-----CCCCEEEE
Q 003279 684 --QMRFQ-----------PRLGRILAAAIENYISILDVETQVCRLKLQGHK--NQ-----VHSVCWN-----TSGEYLAS 738 (834)
Q Consensus 684 --~l~~s-----------p~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~--~~-----I~sl~~s-----pdg~~Las 738 (834)
-+... ..++.+++++.++.+...|+++|+.+..+.... .. ..|.... ..+..|+.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 01111 146788999999999999999999999886421 10 1112111 12345555
Q ss_pred Ee-CCeEEEEEcCCCCCcee-EEEeecCCCc--e-EEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE
Q 003279 739 VS-DELVRVWSIGSGSKGEC-IHELSCTGNK--F-HSCVFHPTFPSLLVIGCYETLELWNMTENKTLT 801 (834)
Q Consensus 739 gs-Dg~I~IwDl~s~~~~~~-i~~~~~~~~~--I-~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~ 801 (834)
+. +..+.+.+ +++..... .......... + ..-.++.++.+ ++++.|+.|+.+|..+++.+-
T Consensus 171 g~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 171 GKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred ecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 55 66777766 34421110 1111110000 0 00001123554 557888888888888777653
No 339
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.0069 Score=65.61 Aligned_cols=187 Identities=9% Similarity=0.019 Sum_probs=103.7
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEeccC-CCCeEEEEEC--C-CCCEEEEE-eCCCeEEEEecCCCCceeeeecc---C
Q 003279 565 KLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFS--P-SLSRLATS-SADRTVRVWDTENPDYSLRTFTG---H 636 (834)
Q Consensus 565 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h-~~~I~~l~fs--p-dg~~Latg-s~Dg~I~IWDl~s~~~~i~~~~~---h 636 (834)
.++++++.||.|+-+|.++|+.+..+... ..++....-. + ++..++.. +.||.|+.++..++......-.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 37888999999999999999999888654 1222221100 1 22333333 57999999998776432211111 1
Q ss_pred CCCeEE---EEE-cc---CCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCe--------eEEEEe-----cCCCEEEE
Q 003279 637 STTVMS---LDF-HP---SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA--------TQMRFQ-----PRLGRILA 696 (834)
Q Consensus 637 ~~~V~s---l~f-sp---dg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i--------~~l~~s-----p~g~~ll~ 696 (834)
..++.. ..+ .+ .....+++++.+|.+...|+.+|+.+..+...... .|.... ..+..++.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 122221 000 00 01346778999999999999999999998864321 122111 12456777
Q ss_pred EEcCCeEEEEECCCCeEEEEE-----eCCCCC--E-EEEEEcCCCCEEEEEeCCeEEEEEcCCCC
Q 003279 697 AAIENYISILDVETQVCRLKL-----QGHKNQ--V-HSVCWNTSGEYLASVSDELVRVWSIGSGS 753 (834)
Q Consensus 697 ~s~dg~I~iwDl~t~~~~~~l-----~~h~~~--I-~sl~~spdg~~LasgsDg~I~IwDl~s~~ 753 (834)
+..+..+.+.+ ++++ +..+ ..+... + .+-..+.|+.++++..||.|..+|..++.
T Consensus 171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~~~G~ 233 (339)
T 2be1_A 171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFRI 233 (339)
T ss_dssp EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETTTEEEEECSTTCC
T ss_pred ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEEECCCCEEEEEECCCCc
Confidence 77777777777 4443 2111 110000 0 00001124666665558888888887763
No 340
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.67 E-value=0.48 Score=53.31 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=61.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE--EEecc------CCCCeEEEEECCC---CCEEEEEeC-------
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEE------HTQWITDVRFSPS---LSRLATSSA------- 614 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~--~~l~~------h~~~I~~l~fspd---g~~Latgs~------- 614 (834)
..-++|+|.|||+++++-...+.|++++..+++.. ..+.. .......|+|+|+ +..|+.+..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 34679999999987776544357988886555433 23321 2456779999995 455544432
Q ss_pred ------CCeEEEEecCCCC-------ceeeeec-cCCCCeEEEEEccCCCcEEEEEe
Q 003279 615 ------DRTVRVWDTENPD-------YSLRTFT-GHSTTVMSLDFHPSKEDLLCSCD 657 (834)
Q Consensus 615 ------Dg~I~IWDl~s~~-------~~i~~~~-~h~~~V~sl~fspdg~~llasgs 657 (834)
...|..|++.... ..+..+. ........|+|.|+|..++.+++
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 2356666654321 1111121 11234789999999875554443
No 341
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=96.66 E-value=0.0017 Score=73.34 Aligned_cols=13 Identities=15% Similarity=0.378 Sum_probs=6.6
Q ss_pred hhhHHHHHHHHHh
Q 003279 53 FEWWSVFWDIFIA 65 (834)
Q Consensus 53 ~eww~~Fwd~f~a 65 (834)
.+.|.++.+.+..
T Consensus 337 ~~~~~~~~~~~~~ 349 (449)
T 3iot_A 337 SAFWYAVRTAVIN 349 (449)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555554443
No 342
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=96.49 E-value=1.3 Score=48.22 Aligned_cols=256 Identities=6% Similarity=-0.054 Sum_probs=120.8
Q ss_pred CCCeEEEEEcC--CCCEEEEEeCCC----cEEEEeCCCCeEEEEecc--------------CCCCeEEEEECC-C-CCEE
Q 003279 552 TSKVESCHFSP--DGKLLATGGHDK----KAVLWCTESFTVKSTLEE--------------HTQWITDVRFSP-S-LSRL 609 (834)
Q Consensus 552 ~~~V~sl~fSp--dg~~Lasgs~Dg----~I~IWd~~t~~~~~~l~~--------------h~~~I~~l~fsp-d-g~~L 609 (834)
...|.+|++.| ++.++| ++..| .|...+ +.++.-..+.. +...|.+|++.| + ...|
T Consensus 54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l 131 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW 131 (394)
T ss_dssp TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred CCceEEEEECCCCCCeEEE-EecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence 34699999998 454444 44444 444432 22322222211 112578899987 2 4556
Q ss_pred EEEeCCCeEEEEecCCCCceeeeec-------------------cCCCCeEEEEEccCC-CcEEEEEeCCCcEEEEECCC
Q 003279 610 ATSSADRTVRVWDTENPDYSLRTFT-------------------GHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINN 669 (834)
Q Consensus 610 atgs~Dg~I~IWDl~s~~~~i~~~~-------------------~h~~~V~sl~fspdg-~~llasgs~Dg~I~lwDl~s 669 (834)
+.++..+.|...+-. ......+. .....|.+|.++|.. ..+++ +..++.|...+ ..
T Consensus 132 ~~g~~~ggl~~S~Dg--G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v-g~~~ggl~~s~-Dg 207 (394)
T 3b7f_A 132 YAGTSPQGLFRSTDH--GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI-GMSSGGVFEST-DA 207 (394)
T ss_dssp EEEEETTEEEEESST--TSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE-EEETBEEEEES-ST
T ss_pred EEEecCCcEEEEcCC--CCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE-EECCCCEEEEC-CC
Confidence 666556655544322 22122221 112457899998843 33443 43344444332 22
Q ss_pred CceeeEeec--------------CCCeeEEEEecC-CCEEEEEEcCCeEEEEECCCCeEEEEEeC--CC---CCEEEEEE
Q 003279 670 GSCAGVFKC--------------QSGATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKLQG--HK---NQVHSVCW 729 (834)
Q Consensus 670 ~~~i~~~~~--------------~~~i~~l~~sp~-g~~ll~~s~dg~I~iwDl~t~~~~~~l~~--h~---~~I~sl~~ 729 (834)
++.-..+.. ...+.++.++|. .+.++++.. +.|...+-. ++.-..+.. .. ..+.++++
T Consensus 208 G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~-~gl~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~ 285 (394)
T 3b7f_A 208 GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH-CGIYRMDRR-EGVWKRIGDAMPREVGDIGFPIVV 285 (394)
T ss_dssp TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET-TEEEEEETT-TTEEECGGGGSCTTTCSCEEEEEE
T ss_pred CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC-CeEEEeCCC-CCcceECCCCCCCCCccceEEEEE
Confidence 222121111 123788899886 356666654 445555432 222222221 11 34667888
Q ss_pred cCC--CCEEEEEe-----------CCeEEEEEcCCC-CCceeEEE-eecCCC----ceEEEEEeCCC-CEEEEEEcCCeE
Q 003279 730 NTS--GEYLASVS-----------DELVRVWSIGSG-SKGECIHE-LSCTGN----KFHSCVFHPTF-PSLLVIGCYETL 789 (834)
Q Consensus 730 spd--g~~Lasgs-----------Dg~I~IwDl~s~-~~~~~i~~-~~~~~~----~I~svafspdg-~~L~sgs~dg~I 789 (834)
+|. +.+++... ++...||....+ .....+.. +..... ....++++|.. ..|++++.++.|
T Consensus 286 ~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l 365 (394)
T 3b7f_A 286 HQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI 365 (394)
T ss_dssp CSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred CCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence 763 34444431 223456655443 22222211 111000 11357788753 457777666666
Q ss_pred EEEECCCCeEEEeccCCCCeEEEEEe
Q 003279 790 ELWNMTENKTLTLSAHDKLVSSLAAS 815 (834)
Q Consensus 790 ~Iwdl~~~~~~~l~~h~~~V~~lafs 815 (834)
+.-+-.......+..+-..|.+|.|.
T Consensus 366 ~~S~D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 366 WASADEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp EEESSTTSBCEEEECSCSCEEEEEEE
T ss_pred EEECCCCCCceEcccCCCCeeEEEEe
Confidence 54432222233344444567777764
No 343
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.44 E-value=0.14 Score=64.28 Aligned_cols=219 Identities=10% Similarity=0.178 Sum_probs=133.1
Q ss_pred CCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCc
Q 003279 572 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 651 (834)
Q Consensus 572 ~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~ 651 (834)
....|.|.|+.++..+.+-. -.--+...+|..+.||.-. ..++.|||+++... +..+.- ...|..=.|-.+..
T Consensus 46 ~~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~k-lks~~~-~e~VvfWkWis~~~- 118 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSK-MKAHTM-TDDVTFWKWISLNT- 118 (1630)
T ss_pred CCceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhh-hccccc-CCCceEEEecCCCe-
Confidence 34478999988765442211 1112344677777776664 77999999987543 444433 34566556665433
Q ss_pred EEEEEeCCCcEEEEECCC-CceeeEeec-----CCCeeEEEEecCCCEEEEEEc-------CCeEEEEECCCCeEEEEEe
Q 003279 652 LLCSCDNNSEIRYWSINN-GSCAGVFKC-----QSGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQ 718 (834)
Q Consensus 652 llasgs~Dg~I~lwDl~s-~~~i~~~~~-----~~~i~~l~~sp~g~~ll~~s~-------dg~I~iwDl~t~~~~~~l~ 718 (834)
+.+++ +..|+.|++.. ..+++.|.. ...|.....+++.++++..+- .|.+.+|..+.+. ...+.
T Consensus 119 l~lVT--~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~ie 195 (1630)
T 1xi4_A 119 VALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIE 195 (1630)
T ss_pred eEEEc--CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhh
Confidence 33232 56899999974 234444432 345777788888888876654 4788888887643 23445
Q ss_pred CCCCCEEEEEEcC---CCCEEEEEe----CCeEEEEEcCCC---CC--c-eeEEEe-e--cCCCceEEEEEeCCCCEEEE
Q 003279 719 GHKNQVHSVCWNT---SGEYLASVS----DELVRVWSIGSG---SK--G-ECIHEL-S--CTGNKFHSCVFHPTFPSLLV 782 (834)
Q Consensus 719 ~h~~~I~sl~~sp---dg~~Lasgs----Dg~I~IwDl~s~---~~--~-~~i~~~-~--~~~~~I~svafspdg~~L~s 782 (834)
||......+.... ...+++.+. .+.++|.++... .. . +.+..+ . ....-..++..++....++.
T Consensus 196 gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~ 275 (1630)
T 1xi4_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 275 (1630)
T ss_pred HhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEE
Confidence 5655444433321 122333333 268999998653 10 0 111111 1 11334467788888889999
Q ss_pred EEcCCeEEEEECCCCeEE
Q 003279 783 IGCYETLELWNMTENKTL 800 (834)
Q Consensus 783 gs~dg~I~Iwdl~~~~~~ 800 (834)
.+..|.|++||+.++.++
T Consensus 276 itk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 276 ITKYGYIHLYDLETGTCI 293 (1630)
T ss_pred EecCceEEEEecccchhh
Confidence 999999999999999877
No 344
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.43 E-value=0.091 Score=55.46 Aligned_cols=214 Identities=7% Similarity=-0.010 Sum_probs=105.7
Q ss_pred CCCEEEEEeC----CCeEEEEecCCCCceeee-eccCCCCeEEEEEccCCCcEEEEEeC----C-----CcEEEEECCCC
Q 003279 605 SLSRLATSSA----DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDN----N-----SEIRYWSINNG 670 (834)
Q Consensus 605 dg~~Latgs~----Dg~I~IWDl~s~~~~i~~-~~~h~~~V~sl~fspdg~~llasgs~----D-----g~I~lwDl~s~ 670 (834)
++.+++.|+. -..+.+||..+....... +....... +++.. + +.+++.|+. + ..+.+||+.+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-G-GLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-T-TEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE-C-CEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 4555666653 235788888765532211 11111111 22222 3 456666664 2 46889999877
Q ss_pred ceeeEeecCC--CeeEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe-
Q 003279 671 SCAGVFKCQS--GATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS- 740 (834)
Q Consensus 671 ~~i~~~~~~~--~i~~l~~sp~g~~ll~~s~d-----g~I~iwDl~t~~~~~~--l~~h~~~I~sl~~spdg~~Lasgs- 740 (834)
+....-.... .-.+++.. ++..+++|+.+ ..+.+||+.+.+-... +........++.+ ++++++.|+
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 177 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF 177 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred eEeECCCCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence 6443322211 11222222 55566666543 4689999987643322 1111111122222 566666665
Q ss_pred C-----CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEeccCCC--C
Q 003279 741 D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDK--L 808 (834)
Q Consensus 741 D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d-----g~I~Iwdl~~~~~~~l~~h~~--~ 808 (834)
+ ..+.+||+.+..- ..+..+.........+.+ ++..++.|+.+ ..+.+||+.+.+...+..... .
T Consensus 178 ~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 254 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNEW-RMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRS 254 (308)
T ss_dssp CSSCBCCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCB
T ss_pred CCCCcCceEEEEeCCCCeE-eeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCcc
Confidence 3 3689999877521 111111111111222222 55566666554 469999999887764432211 1
Q ss_pred eEEEEEeCCCCEEEEEecCC
Q 003279 809 VSSLAASTVNGMVASASHDK 828 (834)
Q Consensus 809 V~~lafspdg~~LaSgs~DG 828 (834)
-.+++. -++++++.|+.++
T Consensus 255 ~~~~~~-~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 255 ALGITV-HQGRIYVLGGYDG 273 (308)
T ss_dssp SCEEEE-ETTEEEEECCBCS
T ss_pred ceEEEE-ECCEEEEEcCcCC
Confidence 112222 3577777777543
No 345
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.38 E-value=0.2 Score=50.47 Aligned_cols=172 Identities=14% Similarity=0.005 Sum_probs=98.6
Q ss_pred CcEEEEEeCCCcEEEEECCCCc------eeeEeec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE------EE
Q 003279 650 EDLLCSCDNNSEIRYWSINNGS------CAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVC------RL 715 (834)
Q Consensus 650 ~~llasgs~Dg~I~lwDl~s~~------~i~~~~~--~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~------~~ 715 (834)
+.+|++..+| +|+.=....+. ....+.. -..+..++|+|++...++ .+|.++-.+..+... ..
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence 3456666666 66555444443 1222222 246889999997764444 888888888755211 11
Q ss_pred EEe--CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeE----EEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003279 716 KLQ--GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECI----HELSCTGNKFHSCVFHPTFPSLLVIGCYETL 789 (834)
Q Consensus 716 ~l~--~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i----~~~~~~~~~I~svafspdg~~L~sgs~dg~I 789 (834)
.+- +-. ...++.|+++|.+.++ +||.|+-++-.+......+ ..-...-..+..+.|.|+|...++ . |+.+
T Consensus 81 ~IG~~Gw~-~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav-~-dg~l 156 (236)
T 1tl2_A 81 KIGNGGWN-QFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAV-H-GQQF 156 (236)
T ss_dssp EEECSCGG-GCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEE-E-TTEE
T ss_pred Eecccccc-cceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEE-e-CCcE
Confidence 121 111 1468999999999888 8898887775432221111 111112256899999999985444 4 7776
Q ss_pred EEEECCCCeE-------EEec-cCCCCeEEEEEeCCCCEEEEEecCCcE
Q 003279 790 ELWNMTENKT-------LTLS-AHDKLVSSLAASTVNGMVASASHDKCV 830 (834)
Q Consensus 790 ~Iwdl~~~~~-------~~l~-~h~~~V~~lafspdg~~LaSgs~DG~I 830 (834)
+-.....+.. ..+. ..-.....+.|.+++.+.++. +|.+
T Consensus 157 yr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 157 YKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp EEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred EecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 5443332210 0111 223344557789988877665 6754
No 346
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.37 E-value=0.21 Score=53.73 Aligned_cols=185 Identities=10% Similarity=-0.005 Sum_probs=91.8
Q ss_pred CCCEEEEEeC-C---------CcEEEEeCCCCeEEEEeccC-C--CCeEEEEECCCCCEEEEEeCC--------------
Q 003279 563 DGKLLATGGH-D---------KKAVLWCTESFTVKSTLEEH-T--QWITDVRFSPSLSRLATSSAD-------------- 615 (834)
Q Consensus 563 dg~~Lasgs~-D---------g~I~IWd~~t~~~~~~l~~h-~--~~I~~l~fspdg~~Latgs~D-------------- 615 (834)
++++++.|+. + ..+.+||..+.+-...-... . ....++. .++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ 142 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEA 142 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhc
Confidence 5667777765 2 46889998876543321111 1 1122233 467788888765
Q ss_pred -------------------------CeEEEEecCCCCceeeeeccCCCCe-EEEEEccCCCcEEEEEeC------CCcEE
Q 003279 616 -------------------------RTVRVWDTENPDYSLRTFTGHSTTV-MSLDFHPSKEDLLCSCDN------NSEIR 663 (834)
Q Consensus 616 -------------------------g~I~IWDl~s~~~~i~~~~~h~~~V-~sl~fspdg~~llasgs~------Dg~I~ 663 (834)
..+.+||+.+.......-....... .+++.. ++.+++.|+. ...+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~ 220 (357)
T 2uvk_A 143 GKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVF 220 (357)
T ss_dssp TTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEE
T ss_pred CCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceE
Confidence 5789999987665332211111111 233332 2446666653 34677
Q ss_pred EEEC--CCCceeeEeec--CCC-eeEEEEecCCCEEEEEEcC----------------------CeEEEEECCCC--eEE
Q 003279 664 YWSI--NNGSCAGVFKC--QSG-ATQMRFQPRLGRILAAAIE----------------------NYISILDVETQ--VCR 714 (834)
Q Consensus 664 lwDl--~s~~~i~~~~~--~~~-i~~l~~sp~g~~ll~~s~d----------------------g~I~iwDl~t~--~~~ 714 (834)
+||+ .+.+....-.. ... ....+...++..+++|+.+ ..+.+||+.+. ..+
T Consensus 221 ~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~ 300 (357)
T 2uvk_A 221 ELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS 300 (357)
T ss_dssp EEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE
T ss_pred EEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC
Confidence 7887 44433322111 111 1222333355666666632 25789998865 344
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEe-CC------eEEEEEcCCCC
Q 003279 715 LKLQGHKNQVHSVCWNTSGEYLASVS-DE------LVRVWSIGSGS 753 (834)
Q Consensus 715 ~~l~~h~~~I~sl~~spdg~~Lasgs-Dg------~I~IwDl~s~~ 753 (834)
..+........++ .-++++++.|+ ++ .|.++++++++
T Consensus 301 ~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 301 GELSQGRAYGVSL--PWNNSLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp EECSSCCBSSEEE--EETTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred CCCCCCcccceeE--EeCCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 3333222222222 23566666666 32 46667887763
No 347
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.35 E-value=0.094 Score=65.92 Aligned_cols=235 Identities=11% Similarity=0.164 Sum_probs=140.5
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccC-
Q 003279 558 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH- 636 (834)
Q Consensus 558 l~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h- 636 (834)
.-.+|..+.||.=. ..++.|||+++...+..+.-. ..|..=.|-.+. .|+..+ +..|+.|++.....+.+.+..|
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhcccccC-CCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence 44577777777654 579999999988777766543 456666776544 344442 4579999998655566666555
Q ss_pred ---CCCeEEEEEccCCCcEEEEEe------CCCcEEEEECCCCceeeEeecCC-CeeEEEE--ecCCCEEEEEEc----C
Q 003279 637 ---STTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQS-GATQMRF--QPRLGRILAAAI----E 700 (834)
Q Consensus 637 ---~~~V~sl~fspdg~~llasgs------~Dg~I~lwDl~s~~~i~~~~~~~-~i~~l~~--sp~g~~ll~~s~----d 700 (834)
...|.....+++.+.++++|= -.|.+.+|..+.+..- .+.++. ....+.. .+....+++-.. .
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ-~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g 225 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch-hhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence 456777788888887776663 3578888888754321 111100 0001111 011112222211 3
Q ss_pred CeEEEEECCCC---eE------EEEEeC---CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003279 701 NYISILDVETQ---VC------RLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 767 (834)
Q Consensus 701 g~I~iwDl~t~---~~------~~~l~~---h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 767 (834)
+.++|.++... .. +..+.. ..+...++..++.-.+++..+ -|.|.+||+.++ .++..-+.....
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~---~~i~~~ris~~~ 302 (1630)
T 1xi4_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGET 302 (1630)
T ss_pred ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccc---hhhhhccccCCc
Confidence 68888888542 11 111111 123344666777666666666 899999999998 666665555666
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 768 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 768 I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
|...+.+....-+++....|.|.-..+....++
T Consensus 303 iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 303 IFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred eEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 666555554444666667777766666665555
No 348
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.34 E-value=0.22 Score=54.99 Aligned_cols=143 Identities=10% Similarity=0.114 Sum_probs=93.9
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC-----CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe--------
Q 003279 646 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-----SGATQMRFQPRLGRILAAAIENYISILDVETQV-------- 712 (834)
Q Consensus 646 spdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~-----~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~-------- 712 (834)
+.++..+++.- ++.||..++......+.+... ..+..+..+|+|.+++..+ +..|.|..+..+.
T Consensus 29 ~~n~t~i~~a~--~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 29 SQNGTRIVFIQ--DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp ETTTTEEEEEE--TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHH
T ss_pred EcCCCEEEEEE--CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccc
Confidence 34555555443 578888888755555555543 2688899999988877764 5688888877321
Q ss_pred ----EEEEEeC------CCCCEEEEEEcCC---CCEEEEEe-CCeEEEEEcCCCCCceeE--------EEeecCCCceEE
Q 003279 713 ----CRLKLQG------HKNQVHSVCWNTS---GEYLASVS-DELVRVWSIGSGSKGECI--------HELSCTGNKFHS 770 (834)
Q Consensus 713 ----~~~~l~~------h~~~I~sl~~spd---g~~Lasgs-Dg~I~IwDl~s~~~~~~i--------~~~~~~~~~I~s 770 (834)
..+.+.- ...+|..+.|+|- +..|++-. |+.|++||+..... ++. ..+......|.+
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~-~P~~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE-KPIVLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS-CCEEESCCCSEEESCSSCCCEEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC-CCcchhccccccCCCcccceEEE
Confidence 1223321 2567999999994 34555555 99999999987322 222 111222367889
Q ss_pred EEEeCCCCEEEEEE--cCCeEEEE
Q 003279 771 CVFHPTFPSLLVIG--CYETLELW 792 (834)
Q Consensus 771 vafspdg~~L~sgs--~dg~I~Iw 792 (834)
++|..++-.|++.+ ..|.|+-.
T Consensus 185 ~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 185 LEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEcCCCcEEEEEecCCCCCEEEE
Confidence 99999888888866 67777643
No 349
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.10 E-value=0.2 Score=50.43 Aligned_cols=176 Identities=10% Similarity=-0.070 Sum_probs=96.7
Q ss_pred CCEEEEEeCCCeEEEEecCCCC---c--eeeeecc-CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC
Q 003279 606 LSRLATSSADRTVRVWDTENPD---Y--SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 679 (834)
Q Consensus 606 g~~Latgs~Dg~I~IWDl~s~~---~--~i~~~~~-h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~ 679 (834)
...|++...| +|++=...... . ....+-. .=..+.+++|+|++. |.++ .+|.++-.+..+.....-+...
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc-EEEE--eCCeEEEECCCCCCcccccccc
Confidence 4566777777 65554443322 1 1112211 124678999999876 4444 5788777776553222111111
Q ss_pred C--------CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE-------EEEEeCCCCCEEEEEEcCCCCEEEEEeCCeE
Q 003279 680 S--------GATQMRFQPRLGRILAAAIENYISILDVETQVC-------RLKLQGHKNQVHSVCWNTSGEYLASVSDELV 744 (834)
Q Consensus 680 ~--------~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~-------~~~l~~h~~~I~sl~~spdg~~LasgsDg~I 744 (834)
. ....+.|.+++...++ .||.|+-++-.+... ...-..-=..+..|.|.|+|.+.++. |+.+
T Consensus 80 t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~l 156 (236)
T 1tl2_A 80 KKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQF 156 (236)
T ss_dssp EEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEE
T ss_pred cEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcE
Confidence 1 1478899999876666 669998887643110 11111112467999999999999988 8885
Q ss_pred EEEEcCCCCCce---eEEEee-cCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003279 745 RVWSIGSGSKGE---CIHELS-CTGNKFHSCVFHPTFPSLLVIGCYETLE 790 (834)
Q Consensus 745 ~IwDl~s~~~~~---~i~~~~-~~~~~I~svafspdg~~L~sgs~dg~I~ 790 (834)
+-....+..... ....+. ..-.....+.|.+++...++. ++.|+
T Consensus 157 yr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 157 YKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp EEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred EecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence 443322111000 111111 222344556788888755554 66444
No 350
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.99 E-value=0.16 Score=60.56 Aligned_cols=221 Identities=5% Similarity=0.003 Sum_probs=111.3
Q ss_pred CCCEEEEEeCC----CeEEEEecCCCCceeeeec------cCCCCeEEEEEcc-CCCcEEEEEeCC------CcEEEEEC
Q 003279 605 SLSRLATSSAD----RTVRVWDTENPDYSLRTFT------GHSTTVMSLDFHP-SKEDLLCSCDNN------SEIRYWSI 667 (834)
Q Consensus 605 dg~~Latgs~D----g~I~IWDl~s~~~~i~~~~------~h~~~V~sl~fsp-dg~~llasgs~D------g~I~lwDl 667 (834)
++.+++.|+.+ ..+.+||+.+..+...... .....-.+++... + +.+++.|+.+ ..+.+||+
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~-~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRN-NQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTT-TEEEEECCBSSTTCBCCCCEEEET
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccC-CEEEEEcCCCCCCCccccEEEEeC
Confidence 34455555432 3577888877654322201 1111112233332 4 4466666643 35889999
Q ss_pred CCCceeeEeec--CCCeeEEEEecCCCEEEEEEcCC--eEEEEECCCCeEEEEEe-----CCCCCEEEEEEcCC-CCEEE
Q 003279 668 NNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKLQ-----GHKNQVHSVCWNTS-GEYLA 737 (834)
Q Consensus 668 ~s~~~i~~~~~--~~~i~~l~~sp~g~~ll~~s~dg--~I~iwDl~t~~~~~~l~-----~h~~~I~sl~~spd-g~~La 737 (834)
.+.+....-.. ...-.+++...++..+++|+.++ .+.+||..+..-...-. .......++.+..+ +++++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 88654433221 12223344434778888887654 79999998875332211 11112233555555 56666
Q ss_pred EEe---C-----CeEEEEEcCCCCC-----ceeEEEeecCCCceEEEEEeCCCCEEEEEEc--------CCeEEEEECCC
Q 003279 738 SVS---D-----ELVRVWSIGSGSK-----GECIHELSCTGNKFHSCVFHPTFPSLLVIGC--------YETLELWNMTE 796 (834)
Q Consensus 738 sgs---D-----g~I~IwDl~s~~~-----~~~i~~~~~~~~~I~svafspdg~~L~sgs~--------dg~I~Iwdl~~ 796 (834)
.|+ + +.+.+||+.+..- ...+.........-.+++...++..+++|+. ...|.+||+.+
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence 665 2 3589999988741 1222221111111223333443666666664 24699999998
Q ss_pred CeEEEeccCC--------CCe-EEEEEeCCCCEEEEEec
Q 003279 797 NKTLTLSAHD--------KLV-SSLAASTVNGMVASASH 826 (834)
Q Consensus 797 ~~~~~l~~h~--------~~V-~~lafspdg~~LaSgs~ 826 (834)
.+........ ..+ .++....++++++.|+.
T Consensus 636 ~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 636 ETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG 674 (695)
T ss_dssp TEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred CeEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence 8765322110 000 23333455677777764
No 351
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=95.90 E-value=3.1 Score=46.78 Aligned_cols=231 Identities=10% Similarity=0.014 Sum_probs=115.3
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCC---eEEEEec---------cCCCCeEEEEECCC----CCEEEEEeC--
Q 003279 554 KVESCHFSPDGK-LLATGGHDKKAVLWCTESF---TVKSTLE---------EHTQWITDVRFSPS----LSRLATSSA-- 614 (834)
Q Consensus 554 ~V~sl~fSpdg~-~Lasgs~Dg~I~IWd~~t~---~~~~~l~---------~h~~~I~~l~fspd----g~~Latgs~-- 614 (834)
.-+.|+|.|||. .|+++...|.|++++.... ..+..+. ........|+|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 357899999996 4556678899999975422 1222221 11456889999996 433333322
Q ss_pred C----------CeEEEEecCCC---------Cceeeeec--cCCCCeEEEEEccCCCcEEEEEeCC--------------
Q 003279 615 D----------RTVRVWDTENP---------DYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNN-------------- 659 (834)
Q Consensus 615 D----------g~I~IWDl~s~---------~~~i~~~~--~h~~~V~sl~fspdg~~llasgs~D-------------- 659 (834)
+ ..|.-|.+... ...+..+. ........|+|.||+..++.+|+..
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~ 174 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSD 174 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCS
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCC
Confidence 1 14555665421 11122221 1123467899999987555444321
Q ss_pred --CcEEEEECCCC------c-------------eeeEee-cCCCeeEEEEecCC-----C-EEEEEEcCC----eEEEEE
Q 003279 660 --SEIRYWSINNG------S-------------CAGVFK-CQSGATQMRFQPRL-----G-RILAAAIEN----YISILD 707 (834)
Q Consensus 660 --g~I~lwDl~s~------~-------------~i~~~~-~~~~i~~l~~sp~g-----~-~ll~~s~dg----~I~iwD 707 (834)
|.|.-.|.... . ....+. .......++|+|.. . .++++...+ .-.|..
T Consensus 175 ~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~~ 254 (463)
T 2wg3_C 175 FTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARILQ 254 (463)
T ss_dssp CTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC------CEEEEE
T ss_pred CCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEecccCCCCCCCCeEee
Confidence 33444454431 0 001111 12346678999962 3 344333212 123333
Q ss_pred CCCC------eEEEEEeCCC-CCEEEEEEcC-------CCCEEEEEeCCeEEEEEcCCCCCceeEEEe-e--------cC
Q 003279 708 VETQ------VCRLKLQGHK-NQVHSVCWNT-------SGEYLASVSDELVRVWSIGSGSKGECIHEL-S--------CT 764 (834)
Q Consensus 708 l~t~------~~~~~l~~h~-~~I~sl~~sp-------dg~~LasgsDg~I~IwDl~s~~~~~~i~~~-~--------~~ 764 (834)
+..+ .++..+..|. ..+..+.|.. .+.+|+..-.+.|....+...........+ . ..
T Consensus 255 i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 334 (463)
T 2wg3_C 255 IIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYF 334 (463)
T ss_dssp EC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSCSCC
T ss_pred eccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCcccccccc
Confidence 3222 2334443221 4677887753 234555444666666665443211111112 1 12
Q ss_pred CCceEEEEEeCCCCEEEEEE
Q 003279 765 GNKFHSCVFHPTFPSLLVIG 784 (834)
Q Consensus 765 ~~~I~svafspdg~~L~sgs 784 (834)
...+..+.+.|+|..+++..
T Consensus 335 ~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 335 SGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp CSEEEEEEECTTCCEEEEEE
T ss_pred cCcceEEEECCCCCEEEEec
Confidence 35789999999998766665
No 352
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.67 E-value=1.1 Score=51.17 Aligned_cols=127 Identities=13% Similarity=0.130 Sum_probs=88.0
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC------ce-------eeEeecCCCeeEEEEecCCCEEEEEEcCCeEE
Q 003279 638 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG------SC-------AGVFKCQSGATQMRFQPRLGRILAAAIENYIS 704 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~------~~-------i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~ 704 (834)
.....+.++|||+++++++-.+.++.++|++.- +. +......-+....+|.++|.-+.+...|..|.
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence 345578899999999999988999999998741 11 33344466788999999984444555799999
Q ss_pred EEECCCC----------eEEEEEeCCCCCEEEEEE------cCCCCEEEEEe----CC----------eEEEEEcCCCCC
Q 003279 705 ILDVETQ----------VCRLKLQGHKNQVHSVCW------NTSGEYLASVS----DE----------LVRVWSIGSGSK 754 (834)
Q Consensus 705 iwDl~t~----------~~~~~l~~h~~~I~sl~~------spdg~~Lasgs----Dg----------~I~IwDl~s~~~ 754 (834)
.|++... ..+.++.-|-.+- .+.- .++|++|++.. |. .-.++|+.. .+
T Consensus 403 kWni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG-dk 480 (638)
T 3sbq_A 403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG-DE 480 (638)
T ss_dssp EEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS-SS
T ss_pred EEeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC-Cc
Confidence 9998753 4566666665433 3333 57899999876 43 347888854 44
Q ss_pred ceeEEEeecCCC
Q 003279 755 GECIHELSCTGN 766 (834)
Q Consensus 755 ~~~i~~~~~~~~ 766 (834)
.+.++.......
T Consensus 481 M~lv~D~P~~~E 492 (638)
T 3sbq_A 481 MKLVHDGPTFAE 492 (638)
T ss_dssp CEEEEEEEESSC
T ss_pred eEEEecCCCCCC
Confidence 566666554433
No 353
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=95.52 E-value=2.3 Score=45.46 Aligned_cols=263 Identities=7% Similarity=-0.003 Sum_probs=139.9
Q ss_pred CEEEEEeCCCcEEEEeCCCCe-------EEEEec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEec---CCC-----Cc
Q 003279 565 KLLATGGHDKKAVLWCTESFT-------VKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENP-----DY 628 (834)
Q Consensus 565 ~~Lasgs~Dg~I~IWd~~t~~-------~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl---~s~-----~~ 628 (834)
.++++.+.+|.|+--.+.+.+ -+..+. ...+.+..+........|+.-+..|.++.... ... ..
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~ 83 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ 83 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence 467788888888876543211 111111 12344555555555566777777887665543 221 11
Q ss_pred eeeeec--cCCCCeEEEEEccC--CCcEEEEEeCCCcEEEEECCCC-------ceeeEeecCCCeeEEEEecCCCEEEEE
Q 003279 629 SLRTFT--GHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNG-------SCAGVFKCQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 629 ~i~~~~--~h~~~V~sl~fspd--g~~llasgs~Dg~I~lwDl~s~-------~~i~~~~~~~~i~~l~~sp~g~~ll~~ 697 (834)
++..+. .....|.++...++ ....++..+.+|.|+...+... .....+...+.+..+........++..
T Consensus 84 ~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~ 163 (327)
T 3uc1_A 84 HVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLV 163 (327)
T ss_dssp EHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEE
T ss_pred EHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEE
Confidence 111111 12455666544332 2446778889999999887542 222233445667777666677889999
Q ss_pred EcCCeEEEEECC--C---------CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC------ceeEE
Q 003279 698 AIENYISILDVE--T---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK------GECIH 759 (834)
Q Consensus 698 s~dg~I~iwDl~--t---------~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~------~~~i~ 759 (834)
+..|.+..+... . |.....+. ....|.++...+++.+|+..+ .|.++...+..-.. .....
T Consensus 164 T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~ 242 (327)
T 3uc1_A 164 SANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTV 242 (327)
T ss_dssp ETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESS
T ss_pred ECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEE
Confidence 999998888776 2 22222232 345677776666666666666 88888888654211 11111
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-------Ee--ccCCCCeEEEEEeCC-CCEEEEEecCC
Q 003279 760 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-------TL--SAHDKLVSSLAASTV-NGMVASASHDK 828 (834)
Q Consensus 760 ~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-------~l--~~h~~~V~~lafspd-g~~LaSgs~DG 828 (834)
.+......+..+....+...++..+.+|.+..++...-... .. ......|.++...+. ...+.+.+.+|
T Consensus 243 ~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~~~~~~~~g 321 (327)
T 3uc1_A 243 MYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNAVDANG 321 (327)
T ss_dssp CCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC-------------
T ss_pred EecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcceEEEEecCC
Confidence 22222344555555555667888888888777776432221 11 123455666655543 34455555554
No 354
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=95.50 E-value=1 Score=53.72 Aligned_cols=237 Identities=9% Similarity=-0.005 Sum_probs=124.0
Q ss_pred EEE-EcCCCCEEEEEeC-----CCcEEEEeCCCCeEEE-Eec-cCCC------CeEEEEECCCCCEEEEEe---------
Q 003279 557 SCH-FSPDGKLLATGGH-----DKKAVLWCTESFTVKS-TLE-EHTQ------WITDVRFSPSLSRLATSS--------- 613 (834)
Q Consensus 557 sl~-fSpdg~~Lasgs~-----Dg~I~IWd~~t~~~~~-~l~-~h~~------~I~~l~fspdg~~Latgs--------- 613 (834)
.+. ++||+++++.+-. -..|+++|+++++.+. .+. .-+. ....++|..+ .-++.+.
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~~~ 211 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEITS 211 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCBCT
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-CEEEEEeCCCCCCcCc
Confidence 344 8899998776532 2479999999998873 121 0000 1134477633 3444332
Q ss_pred --CCCeEEEEecCCCCc-eeeeeccCCCCe-EEEEEccCCCc----EEEEEeCC---CcEEEEECCC--CceeeEeecCC
Q 003279 614 --ADRTVRVWDTENPDY-SLRTFTGHSTTV-MSLDFHPSKED----LLCSCDNN---SEIRYWSINN--GSCAGVFKCQS 680 (834)
Q Consensus 614 --~Dg~I~IWDl~s~~~-~i~~~~~h~~~V-~sl~fspdg~~----llasgs~D---g~I~lwDl~s--~~~i~~~~~~~ 680 (834)
....|+.|.+.+... ....+.+....+ .+...++++.. ++++.+.+ ..+++.|... ++.. .+....
T Consensus 212 ~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~ 290 (711)
T 4hvt_A 212 SLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQ-KINMPS 290 (711)
T ss_dssp TSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEE-ECCSCT
T ss_pred CCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcce-EeecCC
Confidence 135799998876532 223344333333 34455666664 45554422 4566777653 3322 222222
Q ss_pred CeeEEEEecCCCEEEEE----------EcCCeEEEEECCCCe-------EEEE-Ee-CCCCCEEEEEEcCCCCEEEEEe-
Q 003279 681 GATQMRFQPRLGRILAA----------AIENYISILDVETQV-------CRLK-LQ-GHKNQVHSVCWNTSGEYLASVS- 740 (834)
Q Consensus 681 ~i~~l~~sp~g~~ll~~----------s~dg~I~iwDl~t~~-------~~~~-l~-~h~~~I~sl~~spdg~~Lasgs- 740 (834)
... +..+.++..++.. ...+.|.++|+.++. .... +. .....+..+.|..+ .++++..
T Consensus 291 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~ 368 (711)
T 4hvt_A 291 DAT-LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYD 368 (711)
T ss_dssp TCE-EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEE
T ss_pred cce-EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEE
Confidence 222 2334444444422 135679999987631 1122 32 23346778888876 4455444
Q ss_pred CC--eEEEEEcCCCCCceeEEE-eecC-CCceEEEEEeCCCCEEEEE-EcC---CeEEEEECCCCeEE
Q 003279 741 DE--LVRVWSIGSGSKGECIHE-LSCT-GNKFHSCVFHPTFPSLLVI-GCY---ETLELWNMTENKTL 800 (834)
Q Consensus 741 Dg--~I~IwDl~s~~~~~~i~~-~~~~-~~~I~svafspdg~~L~sg-s~d---g~I~Iwdl~~~~~~ 800 (834)
++ .|.++|+.++.. .+.. +... ...+..+.+++++..+++. ++. ..++.+|+. ++..
T Consensus 369 ~~~~~l~~~~~~~g~~--~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~ 433 (711)
T 4hvt_A 369 NVVAKVVTFTLENEQW--TKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HELK 433 (711)
T ss_dssp TTEEEEEEECEETTEE--CCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCEE
T ss_pred CCEEEEEEEECCCCce--EEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcEE
Confidence 66 577887765520 1122 2211 2456666677777554443 332 378888887 5443
No 355
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=95.25 E-value=4.3 Score=44.07 Aligned_cols=209 Identities=10% Similarity=-0.013 Sum_probs=100.1
Q ss_pred CEEEEEeCCCcEEEEeCCC-C---eEEEEeccCCCCeEEEEECC-CCCEEEEEeCCC----eEEEEecCCCCceeeeec-
Q 003279 565 KLLATGGHDKKAVLWCTES-F---TVKSTLEEHTQWITDVRFSP-SLSRLATSSADR----TVRVWDTENPDYSLRTFT- 634 (834)
Q Consensus 565 ~~Lasgs~Dg~I~IWd~~t-~---~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg----~I~IWDl~s~~~~i~~~~- 634 (834)
..|.+|+..| +.+++... + ...... .....|.+|++.| +...|.+++..| .|... ..+......+.
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s--~D~G~tW~~~~~ 98 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS--DDGGGNWTEATR 98 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE--SSTTSCCEECSB
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe--CCCCCCceECCc
Confidence 3677777766 55554332 2 222111 2345699999998 333444444444 34433 22221111111
Q ss_pred -----c--------CCCCeEEEEEccC--CCcEEEEEeCCCcEEEEECCCCceeeEee--------------------cC
Q 003279 635 -----G--------HSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK--------------------CQ 679 (834)
Q Consensus 635 -----~--------h~~~V~sl~fspd--g~~llasgs~Dg~I~lwDl~s~~~i~~~~--------------------~~ 679 (834)
. ....|.+|++.|. ...++ ++...+.|...+-. ++.-..+. ..
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~-~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~ 176 (394)
T 3b7f_A 99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY-AGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDG 176 (394)
T ss_dssp CCCCCCCC----CCCCCEEEEEEECCTTSTTCEE-EEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCC
T ss_pred cccCCCcccccccccccceeEEEeCCCCCCCEEE-EEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCC
Confidence 0 1125778999873 34344 44445555544322 22211111 11
Q ss_pred CCeeEEEEecC-CCEEEEEEcCCeEEEEECCCCeEEEEEeC-----C--------CCCEEEEEEcCC-CCEEEEEeCCeE
Q 003279 680 SGATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKLQG-----H--------KNQVHSVCWNTS-GEYLASVSDELV 744 (834)
Q Consensus 680 ~~i~~l~~sp~-g~~ll~~s~dg~I~iwDl~t~~~~~~l~~-----h--------~~~I~sl~~spd-g~~LasgsDg~I 744 (834)
..+.++.++|. .+.++++..++.|...+-. ++.-..+.. + ...+.+|+++|+ ...|+++.++.|
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl 255 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFESTDA-GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGI 255 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEESST-TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEE
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEECCC-CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeE
Confidence 24678888873 4566666666655544322 221111110 0 124889999986 356666665556
Q ss_pred EEEEcCCCCCceeEEEeec--CC---CceEEEEEeCC-CCEEEEEE
Q 003279 745 RVWSIGSGSKGECIHELSC--TG---NKFHSCVFHPT-FPSLLVIG 784 (834)
Q Consensus 745 ~IwDl~s~~~~~~i~~~~~--~~---~~I~svafspd-g~~L~sgs 784 (834)
...+-. +. ....+.. .. ..+.+++++|. ...|+++.
T Consensus 256 ~~s~D~-G~---tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t 297 (394)
T 3b7f_A 256 YRMDRR-EG---VWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFP 297 (394)
T ss_dssp EEEETT-TT---EEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEE
T ss_pred EEeCCC-CC---cceECCCCCCCCCccceEEEEECCCCCCEEEEEe
Confidence 555422 21 1111111 11 23567788763 34455554
No 356
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.13 E-value=0.77 Score=54.61 Aligned_cols=151 Identities=12% Similarity=0.130 Sum_probs=85.7
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCeEEEE--eccCCCCeEEEEECCCCCEEEEEeCCC--eEEEEecCCCCceeee
Q 003279 563 DGKLLATGGHD------KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRT 632 (834)
Q Consensus 563 dg~~Lasgs~D------g~I~IWd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~Dg--~I~IWDl~s~~~~i~~ 632 (834)
++++++.||.+ ..+.+||..+.+-... +..... -.+++...++++++.|+.++ .+.+||+.+..+....
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence 77788888754 3578899887543322 211111 12333334788888887655 6999999886643222
Q ss_pred e----ccCCCCeEEEEEccCCCcEEEEEeC--C-----CcEEEEECCCCc------eeeEee---cCCCeeEEEEecCCC
Q 003279 633 F----TGHSTTVMSLDFHPSKEDLLCSCDN--N-----SEIRYWSINNGS------CAGVFK---CQSGATQMRFQPRLG 692 (834)
Q Consensus 633 ~----~~h~~~V~sl~fspdg~~llasgs~--D-----g~I~lwDl~s~~------~i~~~~---~~~~i~~l~~sp~g~ 692 (834)
. ........++.+..+...+++.|+. + ..+.+||+.+.. ...... ....-.+++...++.
T Consensus 530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~ 609 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK 609 (695)
T ss_dssp CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE
T ss_pred CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE
Confidence 1 1112222335555553556767765 2 468899998876 222211 111122333344356
Q ss_pred EEEEEEc--------CCeEEEEECCCCeEE
Q 003279 693 RILAAAI--------ENYISILDVETQVCR 714 (834)
Q Consensus 693 ~ll~~s~--------dg~I~iwDl~t~~~~ 714 (834)
.+++|+. ...|.+||+.+.+-.
T Consensus 610 iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 610 LLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred EEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 7777764 346999999987544
No 357
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=95.12 E-value=0.006 Score=68.77 Aligned_cols=14 Identities=21% Similarity=0.266 Sum_probs=6.9
Q ss_pred hHHHHHHHHHhhcc
Q 003279 55 WWSVFWDIFIARTN 68 (834)
Q Consensus 55 ww~~Fwd~f~a~~~ 68 (834)
.|..+|+++.....
T Consensus 335 ~~~~~~~~~~~~~~ 348 (449)
T 3iot_A 335 QMSAFWYAVRTAVI 348 (449)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 34455555554444
No 358
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=94.97 E-value=6.1 Score=44.34 Aligned_cols=229 Identities=13% Similarity=0.069 Sum_probs=118.1
Q ss_pred CCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCC--ceeeeec---------cCCCCeEEEEEccC---CCcEEEEEeC-
Q 003279 595 QWITDVRFSPSLS-RLATSSADRTVRVWDTENPD--YSLRTFT---------GHSTTVMSLDFHPS---KEDLLCSCDN- 658 (834)
Q Consensus 595 ~~I~~l~fspdg~-~Latgs~Dg~I~IWDl~s~~--~~i~~~~---------~h~~~V~sl~fspd---g~~llasgs~- 658 (834)
..-+.|+|.|++. .|+++...|.|++++..... ..+..+. ........|+|+|+ +..++++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3467999999986 56666789999999754321 1111111 11356789999996 2334433322
Q ss_pred -C----------CcEEEEECCCC----------ceeeEeec---CCCeeEEEEecCCCEEEEEEcCC-------------
Q 003279 659 -N----------SEIRYWSINNG----------SCAGVFKC---QSGATQMRFQPRLGRILAAAIEN------------- 701 (834)
Q Consensus 659 -D----------g~I~lwDl~s~----------~~i~~~~~---~~~i~~l~~sp~g~~ll~~s~dg------------- 701 (834)
+ ..|.-|.+..+ +.+..+.. ......+.|.||+..+++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence 1 14555666421 22222221 23467899999997777666432
Q ss_pred ----eEEEEECCCC---------------------eEEEEEeCCCCCEEEEEEcCC-----CC-EEEEEeC-C----eEE
Q 003279 702 ----YISILDVETQ---------------------VCRLKLQGHKNQVHSVCWNTS-----GE-YLASVSD-E----LVR 745 (834)
Q Consensus 702 ----~I~iwDl~t~---------------------~~~~~l~~h~~~I~sl~~spd-----g~-~LasgsD-g----~I~ 745 (834)
.|.-+|.... ..+.. .+|.+ ...++|+|. |. +++++.. + .-.
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a-~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e 251 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFA-HGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSAR 251 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEE-ECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEE-ECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence 3444444431 01111 12333 346899986 44 3443321 2 233
Q ss_pred EEEcCCCCC---ceeEEEeecCC-CceEEEEEeCCCC------EEEEEEcCCeEEEEECCCCe----EEEec--------
Q 003279 746 VWSIGSGSK---GECIHELSCTG-NKFHSCVFHPTFP------SLLVIGCYETLELWNMTENK----TLTLS-------- 803 (834)
Q Consensus 746 IwDl~s~~~---~~~i~~~~~~~-~~I~svafspdg~------~L~sgs~dg~I~Iwdl~~~~----~~~l~-------- 803 (834)
|..+..+.. ..++..+..+. ..+..+.|-.... .++++...+.|....++... ...+.
T Consensus 252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 331 (463)
T 2wg3_C 252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCR 331 (463)
T ss_dssp EEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSC
T ss_pred EeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCccccc
Confidence 444433321 12344443321 4566676643221 25556555777766665432 11221
Q ss_pred -cCCCCeEEEEEeCCCCEEEEEe
Q 003279 804 -AHDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 804 -~h~~~V~~lafspdg~~LaSgs 825 (834)
.....+.++.+.|||.++++..
T Consensus 332 ~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 332 GYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp SCCCSEEEEEEECTTCCEEEEEE
T ss_pred ccccCcceEEEECCCCCEEEEec
Confidence 1235789999999999877765
No 359
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=94.76 E-value=5.9 Score=43.21 Aligned_cols=165 Identities=10% Similarity=0.093 Sum_probs=98.6
Q ss_pred cEEEEECCCC--ceeeEeecC-------CCeeEEEEe---cC----CCEEEEEEc-CCeEEEEECCCCeEEEEEeC----
Q 003279 661 EIRYWSINNG--SCAGVFKCQ-------SGATQMRFQ---PR----LGRILAAAI-ENYISILDVETQVCRLKLQG---- 719 (834)
Q Consensus 661 ~I~lwDl~s~--~~i~~~~~~-------~~i~~l~~s---p~----g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~---- 719 (834)
.|.+||+.++ +.++.+... +.+..+.+. +. +.+++.+.. .+.|.|||+.+++..+.+..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5667888888 777777652 346778877 22 345555553 57899999999876655421
Q ss_pred C--------------CCCEEEEEEcCC----CCEEEEEeCCeEEEEEcC-----CCCCceeEEEeecCC--CceEEEEEe
Q 003279 720 H--------------KNQVHSVCWNTS----GEYLASVSDELVRVWSIG-----SGSKGECIHELSCTG--NKFHSCVFH 774 (834)
Q Consensus 720 h--------------~~~I~sl~~spd----g~~LasgsDg~I~IwDl~-----s~~~~~~i~~~~~~~--~~I~svafs 774 (834)
. ...|..|+++|+ ++.|+...=..-++|.+. .......+..+-... ..-...+++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D 283 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYD 283 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEEC
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEe
Confidence 0 236788999998 788887772223444432 221112222222222 334456675
Q ss_pred -CCCCEEEEEEcCCeEEEEECCC-C----e--EEEeccCCCCeEEEEEeCCCCEEEEEe
Q 003279 775 -PTFPSLLVIGCYETLELWNMTE-N----K--TLTLSAHDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 775 -pdg~~L~sgs~dg~I~Iwdl~~-~----~--~~~l~~h~~~V~~lafspdg~~LaSgs 825 (834)
.+|..+++--..+.|..|+..+ . . .+.....-..+..+.+..+|.+.++++
T Consensus 284 ~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 284 PKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp TTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred CCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 5666555555667999999876 1 1 112112233578888888887666654
No 360
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=94.08 E-value=1.5 Score=45.82 Aligned_cols=240 Identities=13% Similarity=0.034 Sum_probs=122.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeee
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 633 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~ 633 (834)
.|..|+..... .++. . ||.|+.|-....-.+..-......|..|+...+. .++. . ||.|+.|-...... +-.-
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gq-lg~P 97 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQ-TTVP 97 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTST-TCCC
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCC-CCCC
Confidence 35666655432 2333 4 8888888644321111111122357777776443 3333 4 89999998664322 1111
Q ss_pred ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC-ceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003279 634 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV 712 (834)
Q Consensus 634 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~-~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~ 712 (834)
..-...|..|+.... +.+ .-. ||.|+.|-.... +.-........|..++.-. .+.++.. +|.|+.|-....-
T Consensus 98 ~~~~~~v~~ia~G~~--hs~-al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~--~~~~~l~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 98 AEARSGVDAIAAGAW--ASY-ALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV--YTALAVK-NGGVIAWGDNYFG 170 (282)
T ss_dssp GGGSSSEEEEEEETT--EEE-EEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECS--SEEEEEE-TTEEEEEECCTTS
T ss_pred cccCCCeEEEECcCC--EEE-EEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEccc--CEEEEEE-CCEEEEecCCCCC
Confidence 111346777776533 233 334 899999977542 2211111234455555433 3344444 7899988765321
Q ss_pred EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003279 713 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 792 (834)
Q Consensus 713 ~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iw 792 (834)
.+..-......|..|+...+.. ++. .|+.|+.|-.......- .-......|..++..... .++.. |+.|+.|
T Consensus 171 qlg~p~~~~~~v~~i~~G~~hs-~al-~~G~v~~wG~n~~gqlg---~p~~~~~~v~~i~~G~~h--~~al~-~g~v~~w 242 (282)
T 3qhy_B 171 QTTVPAEAQSGVDDVAGGIFHS-LAL-KDGKVIAWGDNRYKQTT---VPTEALSGVSAIASGEWY--SLALK-NGKVIAW 242 (282)
T ss_dssp TTSCCGGGGSSEEEEEECSSEE-EEE-ETTEEEEEECCTTSTTC---CCGGGGSSCCEEEECSSC--EEEEE-TTEEEEE
T ss_pred CCCCceecCCCeEEEEecCCEE-EEE-ECCeEEEEECCCCCCCC---CCcccCCCceEEEcCCCE--EEEEE-CCEEEEe
Confidence 1000001134577776654433 344 69999999765432111 000112345555544433 33344 8999999
Q ss_pred ECCCCeEEEeccCCCCeEEEEEeCCC
Q 003279 793 NMTENKTLTLSAHDKLVSSLAASTVN 818 (834)
Q Consensus 793 dl~~~~~~~l~~h~~~V~~lafspdg 818 (834)
-......+.+ ...|..|+.....
T Consensus 243 G~n~~gq~~v---~~~v~~iaaG~~h 265 (282)
T 3qhy_B 243 GSSRTAPSSV---QSGVSSIEAGPNA 265 (282)
T ss_dssp STTCCCCGGG---SSCEEEEEECSSC
T ss_pred cCCCCccccC---CCCcEEEEECcCe
Confidence 7665443322 3467777765544
No 361
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=94.07 E-value=5.6 Score=42.37 Aligned_cols=233 Identities=8% Similarity=0.054 Sum_probs=128.9
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCe----EEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC---CC-----ce
Q 003279 562 PDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---PD-----YS 629 (834)
Q Consensus 562 pdg~~Lasgs~Dg~I~IWd~~t~~----~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s---~~-----~~ 629 (834)
|+..++++.+.+|.|+--.+.+.+ .-..++.. +.+..+........|+..+..|.++-+.... .. .+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 566788899999999877544221 11123333 3444544444566777778888876665431 11 11
Q ss_pred eee-e-ccCCCCeEEEEEccC--CCcEEEEEeCCCcEEEEECCC--------CceeeEeecCCCeeEEEEecCCCEEEEE
Q 003279 630 LRT-F-TGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINN--------GSCAGVFKCQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 630 i~~-~-~~h~~~V~sl~fspd--g~~llasgs~Dg~I~lwDl~s--------~~~i~~~~~~~~i~~l~~sp~g~~ll~~ 697 (834)
+.. + ......|.++...++ ....++.++.+|.++...+.. +.....+...+.+..+........++..
T Consensus 82 i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~ 161 (323)
T 1wp5_A 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLV 161 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEE
T ss_pred hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEE
Confidence 111 1 112344665533332 133455788899999988742 2222233334566666666666789999
Q ss_pred EcCCeEEEEECCC---------CeEEEEEeCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCC------Cce-eEE
Q 003279 698 AIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGS------KGE-CIH 759 (834)
Q Consensus 698 s~dg~I~iwDl~t---------~~~~~~l~~h~~~I~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~------~~~-~i~ 759 (834)
+.+|.+..|+... |.....+. ....|.++...+++. .|++.+ .|..+..++..-. ... .+.
T Consensus 162 T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~ 240 (323)
T 1wp5_A 162 THNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILR 240 (323)
T ss_dssp ETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSC
T ss_pred eCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECee
Confidence 9999988887642 22222232 234566665444444 455555 8888888775421 111 111
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 760 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 760 ~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
.+......+..+....+...+++.+..|.+..+.+..
T Consensus 241 ~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 241 ELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred ecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 1222233455444444455677888888776666644
No 362
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=93.98 E-value=1.9 Score=44.92 Aligned_cols=216 Identities=13% Similarity=0.040 Sum_probs=113.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceee
Q 003279 595 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 674 (834)
Q Consensus 595 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~ 674 (834)
..|..|+..... .++. . ||.|+.|-...... +-........|..|+.... +.++. . ||.|+.|-....-.+.
T Consensus 24 ~~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gq-lg~p~~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 24 SGVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQ-LTMPAATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SSCCEEEECSSE-EEEE-E-TTEEEEEECCSSST-TSCCGGGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTTC
T ss_pred CCCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCC-CCCCccCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCCC
Confidence 357777775442 2333 5 99999998664332 1111112345777776533 34444 4 8999999876422111
Q ss_pred -EeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003279 675 -VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 752 (834)
Q Consensus 675 -~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~-~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~ 752 (834)
.......|..++... .+.++.. +|.|+.|-.... ..-. -......|..++...+..+ +.. |+.|+.|-....
T Consensus 96 ~P~~~~~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~-~~~~~~~i~~i~~G~~~~~-~l~-~G~v~~wG~n~~ 169 (282)
T 3qhy_B 96 VPAEARSGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTV-PAEAQSGVTALDGGVYTAL-AVK-NGGVIAWGDNYF 169 (282)
T ss_dssp CCGGGSSSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSC-CGGGGSSEEEEEECSSEEE-EEE-TTEEEEEECCTT
T ss_pred CCcccCCCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCC-CccCCCCeEEEEcccCEEE-EEE-CCEEEEecCCCC
Confidence 111234566666554 4555556 999999976542 1100 0112345777765433322 223 899999977653
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE-eccCCCCeEEEEEeCCCCEEEEEecCCcEE
Q 003279 753 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKCVK 831 (834)
Q Consensus 753 ~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~-l~~h~~~V~~lafspdg~~LaSgs~DG~I~ 831 (834)
.... ........|..++.-.. +.++. .++.|+.|-....-.+- -......|..|+..... .++.. ||.|+
T Consensus 170 gqlg---~p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al~--~g~v~ 240 (282)
T 3qhy_B 170 GQTT---VPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLALK--NGKVI 240 (282)
T ss_dssp STTS---CCGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEEE--TTEEE
T ss_pred CCCC---CceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEEEE--CCEEE
Confidence 2211 00111245666655443 33333 68999999765432221 11123457777655433 33333 88888
Q ss_pred Ee
Q 003279 832 IW 833 (834)
Q Consensus 832 IW 833 (834)
.|
T Consensus 241 ~w 242 (282)
T 3qhy_B 241 AW 242 (282)
T ss_dssp EE
T ss_pred Ee
Confidence 88
No 363
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=93.50 E-value=10 Score=41.19 Aligned_cols=230 Identities=11% Similarity=0.117 Sum_probs=115.0
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEecCCCC---------c-eeeeecc-CCCCeEEEEEccCCCcEEEEEeCCCcEEEE
Q 003279 597 ITDVRFSPSLSRLATSSADRTVRVWDTENPD---------Y-SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 665 (834)
Q Consensus 597 I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~---------~-~i~~~~~-h~~~V~sl~fspdg~~llasgs~Dg~I~lw 665 (834)
|..|+.. ....+.-..||.|+.|-..... . ....+.. ....+..++++....+.+ .-..||.|+.|
T Consensus 55 i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~-al~~~G~v~~w 131 (389)
T 3kci_A 55 PVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCL-ALSSEGEVYSW 131 (389)
T ss_dssp EEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEE-EEETTSCEEEE
T ss_pred eEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEE-EEcCCCCEEEE
Confidence 4455442 3455666789999999644211 0 0111111 123344455554444344 45669999999
Q ss_pred ECCCCc-----------eeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC----------e-EEEEEeC-CCC
Q 003279 666 SINNGS-----------CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ----------V-CRLKLQG-HKN 722 (834)
Q Consensus 666 Dl~s~~-----------~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~----------~-~~~~l~~-h~~ 722 (834)
-....- ....+.......-+.+.....+.++...+|.|+.|-.... . ....+.. ...
T Consensus 132 G~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~ 211 (389)
T 3kci_A 132 GEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGH 211 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTS
T ss_pred eCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCC
Confidence 654310 0111111122222333344567778888999999965320 1 1111211 234
Q ss_pred CEEEEEEcCC-CCEEEEEeCCeEEEEEcCCCCC-------ceeE-EEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003279 723 QVHSVCWNTS-GEYLASVSDELVRVWSIGSGSK-------GECI-HELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELW 792 (834)
Q Consensus 723 ~I~sl~~spd-g~~LasgsDg~I~IwDl~s~~~-------~~~i-~~~~~-~~~~I~svafspdg~~L~sgs~dg~I~Iw 792 (834)
.|..++.... ...++...|+.|+.|-...... .... ..+.. ....|..++.-. .+.++...++.|+.|
T Consensus 212 ~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~--~hs~alt~~G~v~~w 289 (389)
T 3kci_A 212 RVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGS--QFSVALTKSGAVYTW 289 (389)
T ss_dssp CEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEET--TEEEEEETTSCEEEE
T ss_pred eEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCC--CEEEEEeCCCeEEEE
Confidence 5777776542 3344444599999997543110 0011 11111 122455555443 355666788899999
Q ss_pred ECCCC------------eEEEecc-CCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 793 NMTEN------------KTLTLSA-HDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 793 dl~~~------------~~~~l~~-h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
-.... .+..+.. ....|..|+.. ....+....||.|+.|
T Consensus 290 G~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~w 341 (389)
T 3kci_A 290 GKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTW 341 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEE
T ss_pred eCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEe
Confidence 65321 1112221 12346666543 3344555788888887
No 364
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=93.29 E-value=9.6 Score=40.27 Aligned_cols=231 Identities=10% Similarity=0.054 Sum_probs=128.4
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEE---------EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC----
Q 003279 561 SPDGKLLATGGHDKKAVLWCTESFTVK---------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---- 627 (834)
Q Consensus 561 Spdg~~Lasgs~Dg~I~IWd~~t~~~~---------~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~---- 627 (834)
-++..++++.+.+|.|+-..+...+.. ..++.. +.+..+........++..+..|.++-+....-.
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 346678899999999998876543221 122333 345555555556678888899988777654210
Q ss_pred ----ce---eeeeccCCCCeEEEEEccC--CCcEEEEEeCCCcEEEEECCC-------CceeeEeecCCCeeEEEEecCC
Q 003279 628 ----YS---LRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPRL 691 (834)
Q Consensus 628 ----~~---i~~~~~h~~~V~sl~fspd--g~~llasgs~Dg~I~lwDl~s-------~~~i~~~~~~~~i~~l~~sp~g 691 (834)
.. ...+. ....|.++...++ ....++..+.+|.++...+.. |.....+...+.+..+......
T Consensus 84 ~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~ 162 (312)
T 1suu_A 84 ASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKD 162 (312)
T ss_dssp ----CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTT
T ss_pred cCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCC
Confidence 00 01112 2344555543321 223455678899999888743 2223333345567776666666
Q ss_pred CEEEEEEcCCeEEEEECCC---------CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC------Cc
Q 003279 692 GRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS------KG 755 (834)
Q Consensus 692 ~~ll~~s~dg~I~iwDl~t---------~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~------~~ 755 (834)
..++..+.+|.+..+.... |.....+.. ...|.++....++..|++.+ .|.++.+++..-. ..
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kG 241 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATG 241 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCC
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCC
Confidence 7899999999999987653 223333332 45566666555555555555 8888888885421 11
Q ss_pred eeEEEee-cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 756 ECIHELS-CTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 756 ~~i~~~~-~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
..+..+. .....+..+....+...++..+..|.+.-...
T Consensus 242 v~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~ 281 (312)
T 1suu_A 242 YTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVA 281 (312)
T ss_dssp EECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEG
T ss_pred EEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 1111122 22234444333344555666777774443443
No 365
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=93.06 E-value=8 Score=40.12 Aligned_cols=197 Identities=10% Similarity=-0.018 Sum_probs=112.2
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEE---ecCCCCceeeeeccCCCCeEEEEEccC-CCcEEEEEeCCCcEEEEECCCC
Q 003279 595 QWITDVRFSPSLSRLATSSADRTVRVW---DTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNG 670 (834)
Q Consensus 595 ~~I~~l~fspdg~~Latgs~Dg~I~IW---Dl~s~~~~i~~~~~h~~~V~sl~fspd-g~~llasgs~Dg~I~lwDl~s~ 670 (834)
+.+..+.......+|+.-+.+|.++-- ++......- +......|..+.. .+ .+..++..+.+|.|+...+..-
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~--ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~ 100 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS--LKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEF 100 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC--CSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc--cCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHh
Confidence 344444444444556666677766543 332211100 1223456666644 32 2446778889999999987543
Q ss_pred ------ceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC---------CeEEEEEeCCCCCEEEEEEcCCCCE
Q 003279 671 ------SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEY 735 (834)
Q Consensus 671 ------~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t---------~~~~~~l~~h~~~I~sl~~spdg~~ 735 (834)
.....++..+.+..+........++..+..|.++.++... |.....+.. ...|.++...+++.+
T Consensus 101 ~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ 179 (276)
T 3no0_A 101 EYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPY 179 (276)
T ss_dssp TTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSE
T ss_pred hhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCE
Confidence 2222334455676666666677899999999988887532 223223332 355666555555556
Q ss_pred EEEEe-CCeEEEEEcCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE--EECCC
Q 003279 736 LASVS-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTE 796 (834)
Q Consensus 736 Lasgs-Dg~I~IwDl~s~~~----~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~I--wdl~~ 796 (834)
++..+ .|.++...+..-.. ..-+..+ .....+..+....+...++..+.+|.+.. ++...
T Consensus 180 ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 180 LLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 66656 88888888753211 1112222 23344555544444456788888887777 76543
No 366
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=92.61 E-value=12 Score=39.48 Aligned_cols=233 Identities=9% Similarity=0.060 Sum_probs=128.3
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEE---------EeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC---CCC--
Q 003279 562 PDGKLLATGGHDKKAVLWCTESFTVKS---------TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NPD-- 627 (834)
Q Consensus 562 pdg~~Lasgs~Dg~I~IWd~~t~~~~~---------~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~---s~~-- 627 (834)
|+..++++.+.+|.|+--.+.+.+... .++.+ +.+..+........|+..+..|.++-+... ...
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 355678889999999887766543221 12222 344444444455677777788887666543 211
Q ss_pred ---ceee-ee-ccCCCCeEEEEEcc--CCCcEEEEEeCCCcEEEEECCC-------CceeeEeecCCCeeEEEEecCCCE
Q 003279 628 ---YSLR-TF-TGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPRLGR 693 (834)
Q Consensus 628 ---~~i~-~~-~~h~~~V~sl~fsp--dg~~llasgs~Dg~I~lwDl~s-------~~~i~~~~~~~~i~~l~~sp~g~~ 693 (834)
.++. .+ ......|.++...+ +....++..+.+|.++...+.. +.....+..++.+..+........
T Consensus 80 a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 80 ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE 159 (307)
T ss_dssp SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCE
T ss_pred CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCCE
Confidence 1111 11 12344566664422 1233455778899999987742 222222333456666666666678
Q ss_pred EEEEEcCCeEEEEECCC---------CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC------Ccee
Q 003279 694 ILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS------KGEC 757 (834)
Q Consensus 694 ll~~s~dg~I~iwDl~t---------~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~------~~~~ 757 (834)
++..+.+|.+..++... |.....+. ....|.++....++..|++.+ .|.++..++..-. ....
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~ 238 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVI 238 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEE
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEE
Confidence 99999999988887642 22222333 345666666555555566666 8888888774321 1111
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 758 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 758 i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
...+....+.+..+....+...|+..+.+|.+.-+++..
T Consensus 239 ~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 239 SIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp SSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred eeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 222333334555554444456677788888776666544
No 367
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=92.32 E-value=15 Score=39.91 Aligned_cols=225 Identities=9% Similarity=0.016 Sum_probs=120.4
Q ss_pred ECCCCCEEEEEeCCCeEEEEecCC------C--CceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE---CCC-
Q 003279 602 FSPSLSRLATSSADRTVRVWDTEN------P--DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS---INN- 669 (834)
Q Consensus 602 fspdg~~Latgs~Dg~I~IWDl~s------~--~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwD---l~s- 669 (834)
+-++..++++.+.+|.|+--.+.. + ......+. ..+.+..+........++ ..+..|.++-+. +..
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll-~fT~~G~~~~~~~~eip~~ 80 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLL-TFTSSGKVFWLPVHQLPEA 80 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEE-EEETTSEEEEEEGGGSCBC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEE-EEeCCCeEEEEEHHHCcCC
Confidence 346778999999999999876532 1 11112222 345666665555545455 445577666554 322
Q ss_pred -----Cceee---EeecCCCeeEEEEec---CCCEEEEEEcCCeEEEEECCC-------CeEEEEEeCCCCCEEEEEEcC
Q 003279 670 -----GSCAG---VFKCQSGATQMRFQP---RLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNT 731 (834)
Q Consensus 670 -----~~~i~---~~~~~~~i~~l~~sp---~g~~ll~~s~dg~I~iwDl~t-------~~~~~~l~~h~~~I~sl~~sp 731 (834)
|..+. .+.....|..+.... .+.+|+.++..|.++...+.. +.....+.. ...+..+....
T Consensus 81 ~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~ 159 (370)
T 3l6v_A 81 GSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTD 159 (370)
T ss_dssp CTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEEC
T ss_pred CcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeC
Confidence 22221 123345566655442 456899999999999887642 233333433 34455444444
Q ss_pred CC-CEEEEEeCCeEEEEEcCCCCC------ceeEEEeecCCCceEEEEEeC-----------------------------
Q 003279 732 SG-EYLASVSDELVRVWSIGSGSK------GECIHELSCTGNKFHSCVFHP----------------------------- 775 (834)
Q Consensus 732 dg-~~LasgsDg~I~IwDl~s~~~------~~~i~~~~~~~~~I~svafsp----------------------------- 775 (834)
.. .+++.+.+|.+..|+...-.. ......+. ....|.++...+
T Consensus 160 ~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~ 238 (370)
T 3l6v_A 160 GDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVI 238 (370)
T ss_dssp SCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC---------------------------
T ss_pred CCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEecccccccccccccccccccccccccccccc
Confidence 44 444444488888887643210 11111121 233444444433
Q ss_pred ------CCCEEEEEEcCCeEEEEECCCCeE--------E--EeccCCCCeEEEEEeCCCCEEEEEecCCcE
Q 003279 776 ------TFPSLLVIGCYETLELWNMTENKT--------L--TLSAHDKLVSSLAASTVNGMVASASHDKCV 830 (834)
Q Consensus 776 ------dg~~L~sgs~dg~I~Iwdl~~~~~--------~--~l~~h~~~V~~lafspdg~~LaSgs~DG~I 830 (834)
++..|++++..|..+...+..-.. . .+....+.+..+.+..+...|+..+..|.+
T Consensus 239 ~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~ 309 (370)
T 3l6v_A 239 DVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTL 309 (370)
T ss_dssp --------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCE
T ss_pred ccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeE
Confidence 456899999999888887643221 1 232333455555444444445555555554
No 368
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=91.94 E-value=18 Score=43.41 Aligned_cols=147 Identities=16% Similarity=0.147 Sum_probs=77.8
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeEEEEeccC-------CCCeEEEEECCC-CCEEEEEeCCCe----E
Q 003279 552 TSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPS-LSRLATSSADRT----V 618 (834)
Q Consensus 552 ~~~V~sl~fSpd-g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h-------~~~I~~l~fspd-g~~Latgs~Dg~----I 618 (834)
.+.|.+|+++|. ...+++++..+.|...+ +.++.-..+..+ ...|.+|++.|. ...++.+..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 457999999995 35666677777776665 334433334332 246999999984 344444443211 3
Q ss_pred EEEecCCCCceeeeecc---------CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-------cCCCe
Q 003279 619 RVWDTENPDYSLRTFTG---------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------CQSGA 682 (834)
Q Consensus 619 ~IWDl~s~~~~i~~~~~---------h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-------~~~~i 682 (834)
.||.-..+......... ....+..++++|.....++.+...+.|. .....|+.=..+. ....+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCe
Confidence 44544433332222211 0113567888886555565665344332 2222222111111 12457
Q ss_pred eEEEEecC-CCEEEEEEcC
Q 003279 683 TQMRFQPR-LGRILAAAIE 700 (834)
Q Consensus 683 ~~l~~sp~-g~~ll~~s~d 700 (834)
..+.++|. ...++++..+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEECTTSTTCEEEEESS
T ss_pred EEEEECCCCCCEEEEEEcC
Confidence 78888884 4466666654
No 369
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=91.89 E-value=16 Score=39.52 Aligned_cols=234 Identities=11% Similarity=0.053 Sum_probs=133.1
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCC---------CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC---C-
Q 003279 560 FSPDGKLLATGGHDKKAVLWCTES---------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---P- 626 (834)
Q Consensus 560 fSpdg~~Lasgs~Dg~I~IWd~~t---------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s---~- 626 (834)
+-++..++++.+.+|.|+--.+.+ +..-..++. .+.+..+........|+..+..|.++-+.... .
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 346788999999999999865432 222334443 45566666666667788788888877665431 1
Q ss_pred ----Cceeeee--ccCCCCeEEEEEcc--CCCcEEEEEeCCCcEEEEECCC-------CceeeEeecCCCeeEEEEecCC
Q 003279 627 ----DYSLRTF--TGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPRL 691 (834)
Q Consensus 627 ----~~~i~~~--~~h~~~V~sl~fsp--dg~~llasgs~Dg~I~lwDl~s-------~~~i~~~~~~~~i~~l~~sp~g 691 (834)
...+..+ ......|.++.... +....++.++..|.++...+.. +.....+.....+..+......
T Consensus 82 r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~ 161 (370)
T 3l6v_A 82 SNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGD 161 (370)
T ss_dssp TTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSC
T ss_pred cccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCC
Confidence 1111111 12345566654432 1233566788899999988643 2222233334556666666666
Q ss_pred CEEEEEEcCCeEEEEECCC---------CeEEEEEeCCCCCEEEEEEcC-------------------------------
Q 003279 692 GRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNT------------------------------- 731 (834)
Q Consensus 692 ~~ll~~s~dg~I~iwDl~t---------~~~~~~l~~h~~~I~sl~~sp------------------------------- 731 (834)
..++..+..|.+..|+... |.....+. ....|.++...+
T Consensus 162 ~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~ 240 (370)
T 3l6v_A 162 RDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDV 240 (370)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC-----------------------------
T ss_pred ceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEecccccccccccccccccccccccccccccccc
Confidence 7899999999888887542 22222222 234455554433
Q ss_pred ----CCCEEEEEe-CCeEEEEEcCCCCC------ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003279 732 ----SGEYLASVS-DELVRVWSIGSGSK------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 732 ----dg~~Lasgs-Dg~I~IwDl~s~~~------~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
++..|++.+ .|..+...+..-.. ......+....+.+..+.+..+...|+..+..|.+.-..+.
T Consensus 241 ~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~ 315 (370)
T 3l6v_A 241 ADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGS 315 (370)
T ss_dssp ------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGG
T ss_pred ccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHh
Confidence 344666666 88888887753211 11111222233455555555555667777888866655543
No 370
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=91.74 E-value=10 Score=44.89 Aligned_cols=223 Identities=9% Similarity=0.049 Sum_probs=113.7
Q ss_pred EEEE-ECCCCCEEEEE-eC----CCeEEEEecCCCCceeeeec-cCCC------CeEEEEEccCCCcEEEEEe-------
Q 003279 598 TDVR-FSPSLSRLATS-SA----DRTVRVWDTENPDYSLRTFT-GHST------TVMSLDFHPSKEDLLCSCD------- 657 (834)
Q Consensus 598 ~~l~-fspdg~~Latg-s~----Dg~I~IWDl~s~~~~i~~~~-~h~~------~V~sl~fspdg~~llasgs------- 657 (834)
..+. ++|++++++.+ |. -..|+++|+.+++..-..+. .... ....++|..+ +.++++..
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCBC
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-CEEEEEeCCCCCCcC
Confidence 3444 78888876654 22 23799999998654222222 0000 1134477633 44554421
Q ss_pred ---CCCcEEEEECCCCc--eeeEeec--CCCeeEEEEecCCCE-----EEEEEcC---CeEEEEECCC--CeEEEEEeCC
Q 003279 658 ---NNSEIRYWSINNGS--CAGVFKC--QSGATQMRFQPRLGR-----ILAAAIE---NYISILDVET--QVCRLKLQGH 720 (834)
Q Consensus 658 ---~Dg~I~lwDl~s~~--~i~~~~~--~~~i~~l~~sp~g~~-----ll~~s~d---g~I~iwDl~t--~~~~~~l~~h 720 (834)
....|+.|.+-+.. -...+.. ..-......+.++++ ++..+.+ ..+++.|... ++ ...+...
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ 289 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMP 289 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSC
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecC
Confidence 12468888887642 2233433 222334445566652 3333322 4567777653 33 2333222
Q ss_pred CCCEEEEEEcCCCCEEEEE-----------eCCeEEEEEcCCCCCc----eeEEE-e-ecCCCceEEEEEeCCCCEEEEE
Q 003279 721 KNQVHSVCWNTSGEYLASV-----------SDELVRVWSIGSGSKG----ECIHE-L-SCTGNKFHSCVFHPTFPSLLVI 783 (834)
Q Consensus 721 ~~~I~sl~~spdg~~Lasg-----------sDg~I~IwDl~s~~~~----~~i~~-~-~~~~~~I~svafspdg~~L~sg 783 (834)
... .+..+.++.+++.. ..+.|.++|+.+.... ..... + ......+..+.|..+ ..+++.
T Consensus 290 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~ 366 (711)
T 4hvt_A 290 SDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLAT 366 (711)
T ss_dssp TTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEE
T ss_pred Ccc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEE
Confidence 221 12334455555532 1557899998764210 11112 2 223446777888876 455566
Q ss_pred EcCC--eEEEEECCCCe--EEE-ec-cCCCCeEEEEEeCCCC-EEEEEe
Q 003279 784 GCYE--TLELWNMTENK--TLT-LS-AHDKLVSSLAASTVNG-MVASAS 825 (834)
Q Consensus 784 s~dg--~I~Iwdl~~~~--~~~-l~-~h~~~V~~lafspdg~-~LaSgs 825 (834)
..++ .|+++|+.+++ ... +. ...+.|..+.+++++. ++++.+
T Consensus 367 ~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~s 415 (711)
T 4hvt_A 367 YDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIE 415 (711)
T ss_dssp EETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEE
T ss_pred EECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEe
Confidence 6666 67888877664 222 21 1134566666667665 444443
No 371
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=91.06 E-value=18 Score=38.44 Aligned_cols=195 Identities=12% Similarity=0.052 Sum_probs=108.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEe---CCC------CeEEEE---eccCCCCeEEE-EECC--CCCEEEEEeCCCeE
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWC---TES------FTVKST---LEEHTQWITDV-RFSP--SLSRLATSSADRTV 618 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd---~~t------~~~~~~---l~~h~~~I~~l-~fsp--dg~~Latgs~Dg~I 618 (834)
.+..+........|+.-+..|.++... +.. |..+.. +. ....|..+ .+.. +..++++++.+|.|
T Consensus 43 ~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~i 121 (327)
T 3uc1_A 43 IVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLV 121 (327)
T ss_dssp CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEE
T ss_pred EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEE
Confidence 344444444455666666677766553 332 232211 22 23445554 4442 57899999999999
Q ss_pred EEEecCCCC------ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC--C---------CceeeEeecCCC
Q 003279 619 RVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--N---------GSCAGVFKCQSG 681 (834)
Q Consensus 619 ~IWDl~s~~------~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~--s---------~~~i~~~~~~~~ 681 (834)
+...+..-. .....+.. .+.+..+........++ ..+..|.+..+... . |.....+.....
T Consensus 122 Kr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~il-l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~ 199 (327)
T 3uc1_A 122 KKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLL-LVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDR 199 (327)
T ss_dssp EEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEE-EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCC
T ss_pred EEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEE-EEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCE
Confidence 998875411 11112222 34555555554444444 56668888888766 2 111122333456
Q ss_pred eeEEEEecCCCEEEEEEcCCeEEEEECCCC---------eEEEEEeCCCCCEEEEEEc-CCCCEEEEEeCCeEEEEEcCC
Q 003279 682 ATQMRFQPRLGRILAAAIENYISILDVETQ---------VCRLKLQGHKNQVHSVCWN-TSGEYLASVSDELVRVWSIGS 751 (834)
Q Consensus 682 i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~---------~~~~~l~~h~~~I~sl~~s-pdg~~LasgsDg~I~IwDl~s 751 (834)
|..+...+.+.+++.++..|.++...+..- .....+..-.+.+..+... .+..+++.+.+|.+..++...
T Consensus 200 Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 200 LLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 777777666779999999999988876421 1222222213345544443 334445555588777777653
No 372
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=91.04 E-value=32 Score=41.22 Aligned_cols=144 Identities=11% Similarity=0.150 Sum_probs=72.1
Q ss_pred CCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCCCceeeeeccC-------CCCeEEEEEccCCCcEEEEEeCCCc----
Q 003279 594 TQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDNNSE---- 661 (834)
Q Consensus 594 ~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h-------~~~V~sl~fspdg~~llasgs~Dg~---- 661 (834)
...|.+|+++|. ...+++++..+.|...+=. ......+..+ ...|.+|+++|.....++.+..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~Dg--G~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAG--TSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETT--TTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCC--CCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence 468999999985 4566677777766555432 2222322221 2469999999864444444432211
Q ss_pred EEEE-ECCCCceeeEeecC----------CCeeEEEEecCC-CEEEEEEcCCeEEEEECCCC---eEEEEEe---CCCCC
Q 003279 662 IRYW-SINNGSCAGVFKCQ----------SGATQMRFQPRL-GRILAAAIENYISILDVETQ---VCRLKLQ---GHKNQ 723 (834)
Q Consensus 662 I~lw-Dl~s~~~i~~~~~~----------~~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t~---~~~~~l~---~h~~~ 723 (834)
-.|| ....|+.=..+... ..+..++++|.. +.++++...+.|.. ....+ +.+..+. .....
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTC
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCC
Confidence 2333 33334322222211 124568888754 44555543444322 22222 3222111 11245
Q ss_pred EEEEEEcCC-CCEEEEEe
Q 003279 724 VHSVCWNTS-GEYLASVS 740 (834)
Q Consensus 724 I~sl~~spd-g~~Lasgs 740 (834)
+..|.++|. +..++++.
T Consensus 171 ~~~i~~~p~~~~~~~~~~ 188 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASA 188 (789)
T ss_dssp EEEEEECTTSTTCEEEEE
T ss_pred eEEEEECCCCCCEEEEEE
Confidence 788999874 34454444
No 373
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=90.85 E-value=18 Score=38.03 Aligned_cols=223 Identities=10% Similarity=0.029 Sum_probs=117.4
Q ss_pred CCCCEEEEEeCCCeEEEEecCCCCce--------eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC---CC---
Q 003279 604 PSLSRLATSSADRTVRVWDTENPDYS--------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI---NN--- 669 (834)
Q Consensus 604 pdg~~Latgs~Dg~I~IWDl~s~~~~--------i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl---~s--- 669 (834)
|+..++++.+.+|.|+--.+.+-... ...+. ..+.+..+........++ ..+..|.++-+.. ..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll-~fT~~G~~~~~~~~elp~~~~ 78 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHIL-CFSSRGRVYSMKVYQLPEATR 78 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEE-EEETTSEEEEEEGGGSCCCCS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEE-EEECCCEEEEEEhhHCcCCCC
Confidence 34567889999999988776542110 01112 223444444444444444 4455777655543 22
Q ss_pred ---Cceee---EeecCCCeeEEEEe---cCCCEEEEEEcCCeEEEEECCC-------CeEEEEEeCCCCCEEEEEEc-CC
Q 003279 670 ---GSCAG---VFKCQSGATQMRFQ---PRLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWN-TS 732 (834)
Q Consensus 670 ---~~~i~---~~~~~~~i~~l~~s---p~g~~ll~~s~dg~I~iwDl~t-------~~~~~~l~~h~~~I~sl~~s-pd 732 (834)
|..+. .+.....|..+... .++.+++.++..|.++...+.. +.....+..+ +.+..+... .+
T Consensus 79 ~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~ 157 (307)
T 1zi0_A 79 GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGE 157 (307)
T ss_dssp SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTT
T ss_pred CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCC
Confidence 22211 12334456665443 3456899999999999987642 2233334444 455554444 34
Q ss_pred CCEEEEEeCCeEEEEEcCCCCC------ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe--------
Q 003279 733 GEYLASVSDELVRVWSIGSGSK------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-------- 798 (834)
Q Consensus 733 g~~LasgsDg~I~IwDl~s~~~------~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~-------- 798 (834)
..+++.+++|.+..++...-.. ......+. ....|..+....++..|++.+..|.++..++..-.
T Consensus 158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG 236 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG 236 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCC
T ss_pred CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCC
Confidence 4455555588888887753211 11111222 24456666555556779999999988888763211
Q ss_pred EE--EeccCCCCeEEEEEeCCCCEEEEEecCCcE
Q 003279 799 TL--TLSAHDKLVSSLAASTVNGMVASASHDKCV 830 (834)
Q Consensus 799 ~~--~l~~h~~~V~~lafspdg~~LaSgs~DG~I 830 (834)
.. .+....+.+..+....+..-|+..+.+|.+
T Consensus 237 ~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ 270 (307)
T 1zi0_A 237 VISIKVTERNGLVVGAVQVDDCDQIMMITDAGTL 270 (307)
T ss_dssp EESSCCCTTTCSEEEEEEECTTCEEEEEESSCCE
T ss_pred EEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcE
Confidence 11 222333555555444444445555566654
No 374
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=88.97 E-value=25 Score=36.96 Aligned_cols=189 Identities=12% Similarity=0.087 Sum_probs=108.1
Q ss_pred CCCCEEEEEeCCCeEEEEecCCCCce------e--eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC---C--
Q 003279 604 PSLSRLATSSADRTVRVWDTENPDYS------L--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---G-- 670 (834)
Q Consensus 604 pdg~~Latgs~Dg~I~IWDl~s~~~~------i--~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s---~-- 670 (834)
++..++++.+.+|.|+-..+..-... + ..+. ..+.+..+........++ ..+..|.++-+.... .
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll-~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLF-MISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEE-EEETTSEEEEEEGGGSCC---
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEE-EEECCCeEEEEEHHHCCCCCc
Confidence 45678899999999998876532110 1 1112 234455554444434444 556688877666531 1
Q ss_pred ----ce---eeEeecCCCeeEEEEec---CCCEEEEEEcCCeEEEEECCC-------CeEEEEEeCCCCCEEEEEEcCCC
Q 003279 671 ----SC---AGVFKCQSGATQMRFQP---RLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNTSG 733 (834)
Q Consensus 671 ----~~---i~~~~~~~~i~~l~~sp---~g~~ll~~s~dg~I~iwDl~t-------~~~~~~l~~h~~~I~sl~~spdg 733 (834)
.. ...+.....+..+...+ +..+++.++..|.++...+.. +.....+.. .+.+..+....++
T Consensus 84 ~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~ 162 (312)
T 1suu_A 84 ASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD 162 (312)
T ss_dssp ----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred cCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence 11 11123344555554443 467899999999999887743 333333443 4556555554444
Q ss_pred C-EEEEEeCCeEEEEEcCCC----C--CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 734 E-YLASVSDELVRVWSIGSG----S--KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 734 ~-~LasgsDg~I~IwDl~s~----~--~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
. +++++.+|.+..+.+..- . .......+. ....+..+....++..|++.+..|.++..++..
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 4 444445999888887542 1 111122222 244566666656667799999999988888743
No 375
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=88.75 E-value=31 Score=37.66 Aligned_cols=227 Identities=4% Similarity=-0.002 Sum_probs=117.2
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc-----------eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 003279 595 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 663 (834)
Q Consensus 595 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~-----------~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 663 (834)
..|..|+.. ....+.-..||.|+.|-...... ..-........|..|+... ...+.-..||.|+
T Consensus 75 ~~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~---~hs~al~~~G~v~ 149 (423)
T 3mvd_K 75 PDAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGD---SHSACLLEDGRVF 149 (423)
T ss_dssp SSEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECS---SEEEEEETTSCEE
T ss_pred CCceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCc---CeEEEEeCCCeEE
Confidence 346666664 44666667899999996543110 0011111234566666542 2334456799999
Q ss_pred EEEC--CC-Cce--------eeEeec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-------------------
Q 003279 664 YWSI--NN-GSC--------AGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQ------------------- 711 (834)
Q Consensus 664 lwDl--~s-~~~--------i~~~~~--~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~------------------- 711 (834)
.|-. .. +.+ ...... ...|..++ ....+.++...+|.|+.|-....
T Consensus 150 ~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va--~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~ 227 (423)
T 3mvd_K 150 AWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIA--SGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGK 227 (423)
T ss_dssp EEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEE--ECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTT
T ss_pred EEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEe--cCCCeEEEEecCCeEEEeeCCcCCccCCCccccccccccccc
Confidence 9985 32 211 111111 23344444 34567778888999999953321
Q ss_pred ----eEEEEEeCCCCCEEEEEEcCCCCEEEE-EeCCeEEEEEcCCCCC--------ceeEEEeecCCCceEEEEEeCCCC
Q 003279 712 ----VCRLKLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVWSIGSGSK--------GECIHELSCTGNKFHSCVFHPTFP 778 (834)
Q Consensus 712 ----~~~~~l~~h~~~I~sl~~spdg~~Las-gsDg~I~IwDl~s~~~--------~~~i~~~~~~~~~I~svafspdg~ 778 (834)
.+..........|..|+..... .++. ..++.|+.|-...... .............|..++. ...
T Consensus 228 ~~~~~p~~v~~~~~~~v~~i~~g~~~-~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~--G~~ 304 (423)
T 3mvd_K 228 RDLLRPTQLIITRAKPFEAIWATNYC-TFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG--GQH 304 (423)
T ss_dssp TTTSSCEEECCTTCCCEEEEEEETTE-EEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEE--CSS
T ss_pred ccccCCeEEeecCCccEEEEEECCcE-EEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEc--ccC
Confidence 1111111123356666554322 2232 2488899987543210 0111112222345555544 334
Q ss_pred EEEEEEcCCeEEEEECCCC-------------eEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 779 SLLVIGCYETLELWNMTEN-------------KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 779 ~L~sgs~dg~I~Iwdl~~~-------------~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
+.++...++.|+.|-.... .+..+......|..|+... .+.+.-..||.|+.|
T Consensus 305 ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~--~hs~alt~~G~v~~w 370 (423)
T 3mvd_K 305 HTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGE--VCSYAVTIDGKLYSW 370 (423)
T ss_dssp EEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEET--TEEEEEETTSCEEEE
T ss_pred eEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCC--CeEEEEcCCCCEEEE
Confidence 5667778889999965321 1112222333677777653 334444688888888
No 376
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=87.95 E-value=27 Score=36.06 Aligned_cols=194 Identities=11% Similarity=0.020 Sum_probs=108.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEE---eCCCCeEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCC-
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLW---CTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD- 627 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IW---d~~t~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~s~~- 627 (834)
+.|.++.......+|+.-+.+|.++-- ++...+....+. ....|..+.... +..++++.+.+|.|+...+..-.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 345555544445566666677877654 333222111133 345566664421 46789999999999999876421
Q ss_pred ----ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC---------CceeeEeecCCCeeEEEEecCCCEE
Q 003279 628 ----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---------GSCAGVFKCQSGATQMRFQPRLGRI 694 (834)
Q Consensus 628 ----~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s---------~~~i~~~~~~~~i~~l~~sp~g~~l 694 (834)
.....+. ..+.+..+........++ ..+..|.+..++... |.....+.....+..+....++..+
T Consensus 103 ~~~G~~~i~lk-egD~l~~~~~~~~~~~il-l~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~l 180 (276)
T 3no0_A 103 KAQGMPIIKLT-EGDEVVSIASSVDETHIL-LFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYL 180 (276)
T ss_dssp CSTTEECSCCC-TTCCEEEEEECCSSCEEE-EEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEE
T ss_pred hcCCeEEEecC-CCCEEEEEEEeCCCCEEE-EEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEE
Confidence 1111222 235566665554444444 566788888887532 2122223334567776666667789
Q ss_pred EEEEcCCeEEEEECCC-------CeEEEEEeCCCCCEEEEEE-cCCCCEEEEEeCCeEEE--EEcC
Q 003279 695 LAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCW-NTSGEYLASVSDELVRV--WSIG 750 (834)
Q Consensus 695 l~~s~dg~I~iwDl~t-------~~~~~~l~~h~~~I~sl~~-spdg~~LasgsDg~I~I--wDl~ 750 (834)
+..+..|.++...+.. ++-+..+ ...+.+..+.. ..+..+++.+.+|.+.. +++.
T Consensus 181 l~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 181 LVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 9999999988887643 1222222 22334444433 33334444444777666 7654
No 377
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=87.19 E-value=0.63 Score=39.35 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhcCCCCC
Q 003279 10 KMLDVYIYDYLLKRKLHASAKAFQTEGKVSTD 41 (834)
Q Consensus 10 ~~L~~yiy~yl~k~~~~~~A~~~~~e~~~~~~ 41 (834)
+-||.-|++||..+|+.+++.+|.+|.+++.+
T Consensus 11 eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~ 42 (88)
T 1uuj_A 11 DELNRAIADYLRSNGYEEAYSVFKKEAELDMN 42 (88)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCC
Confidence 35799999999999999999999999988854
No 378
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=85.29 E-value=41 Score=35.55 Aligned_cols=190 Identities=13% Similarity=0.114 Sum_probs=104.5
Q ss_pred CCCCEEEEEeCCCeEEEEecCCC---CceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC---CC------Cc
Q 003279 604 PSLSRLATSSADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI---NN------GS 671 (834)
Q Consensus 604 pdg~~Latgs~Dg~I~IWDl~s~---~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl---~s------~~ 671 (834)
|+..++++.+.+|.|+--.+..- ......+. ..+.+..+........++ ..+..|.++-+.. .. |.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~t~d~ll-~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLL-LFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEE-EEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEECCCCEEE-EEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 56678899999999998765421 11011222 234454544444444455 4455777665544 22 22
Q ss_pred eee---EeecCCCeeEEEEecC---CCEEEEEEcCCeEEEEECC--------CCeEEEEEeCCCCCEEEEEEcC-CCCEE
Q 003279 672 CAG---VFKCQSGATQMRFQPR---LGRILAAAIENYISILDVE--------TQVCRLKLQGHKNQVHSVCWNT-SGEYL 736 (834)
Q Consensus 672 ~i~---~~~~~~~i~~l~~sp~---g~~ll~~s~dg~I~iwDl~--------t~~~~~~l~~h~~~I~sl~~sp-dg~~L 736 (834)
.+. .+.....|..+...++ +.+++.++..|.++...+. .+.....+... +.+..+.... +..++
T Consensus 81 ~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 81 HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELF 159 (323)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEE
T ss_pred ChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEE
Confidence 111 1223345665544332 5689999999999998774 23333334433 4555554444 44455
Q ss_pred EEEeCCeEEEEEcCCCC----CceeEEEeec-CCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCC
Q 003279 737 ASVSDELVRVWSIGSGS----KGECIHELSC-TGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTE 796 (834)
Q Consensus 737 asgsDg~I~IwDl~s~~----~~~~i~~~~~-~~~~I~svafspdg~-~L~sgs~dg~I~Iwdl~~ 796 (834)
+.+.+|.+..++...-. ...-+..+.. ....|.++...+++. .|++.+..|..+..++..
T Consensus 160 l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 55559988888775321 1111111211 234566665544455 789999999888777644
No 379
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=85.29 E-value=0.6 Score=39.71 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhcCCCCCC
Q 003279 11 MLDVYIYDYLLKRKLHASAKAFQTEGKVSTDP 42 (834)
Q Consensus 11 ~L~~yiy~yl~k~~~~~~A~~~~~e~~~~~~~ 42 (834)
-+|-.||-||..+|+..+|-+|.+|.+++..+
T Consensus 7 evN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~ 38 (90)
T 2xtc_A 7 EVNFLVYRYLQESGFSHSAFTFGIESHISQSN 38 (90)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCCccc
Confidence 48999999999999999999999999888653
No 380
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=81.57 E-value=62 Score=34.81 Aligned_cols=234 Identities=10% Similarity=0.047 Sum_probs=121.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCC-----------CeEEEEecc-CCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTES-----------FTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t-----------~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
|..|+.. ....+.-..||.|+.|-... ......+.. ....+..++.+......+.-..||.|+.|-
T Consensus 55 i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG 132 (389)
T 3kci_A 55 PVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWG 132 (389)
T ss_dssp EEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEE
T ss_pred eEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEe
Confidence 4445433 33455556788888884321 111122222 223455667776667777778899999996
Q ss_pred cCCCC----------ceeeeecc-CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC-c--------e--eeEeec--
Q 003279 623 TENPD----------YSLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-S--------C--AGVFKC-- 678 (834)
Q Consensus 623 l~s~~----------~~i~~~~~-h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~-~--------~--i~~~~~-- 678 (834)
..... .....+.. ....|..|+.-. ...+.-..+|.|+.|-.... + . ...+..
T Consensus 133 ~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~ 209 (389)
T 3kci_A 133 EAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGG---AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ 209 (389)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECS---SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT
T ss_pred CCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCc---CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccC
Confidence 54211 00111111 123566666542 23344566999999975431 0 0 011111
Q ss_pred CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-----------eEEEEEeC-CCCCEEEEEEcCCCCEEEEEeCCeEEE
Q 003279 679 QSGATQMRFQPRLGRILAAAIENYISILDVETQ-----------VCRLKLQG-HKNQVHSVCWNTSGEYLASVSDELVRV 746 (834)
Q Consensus 679 ~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~-----------~~~~~l~~-h~~~I~sl~~spdg~~LasgsDg~I~I 746 (834)
...+..++......+.++...+|.|+.|-.... .....+.. ....|..|+.... ..++...|+.|+.
T Consensus 210 ~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~-hs~alt~~G~v~~ 288 (389)
T 3kci_A 210 GHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ-FSVALTKSGAVYT 288 (389)
T ss_dssp TSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT-EEEEEETTSCEEE
T ss_pred CCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC-EEEEEeCCCeEEE
Confidence 234555555443467778888999999964321 11122221 1224666655322 2334444889999
Q ss_pred EEcCCCC------C--ceeEEEee-cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 747 WSIGSGS------K--GECIHELS-CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 747 wDl~s~~------~--~~~i~~~~-~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
|-..... . ......+. .....|..++.- ..+.++...++.|+.|-...
T Consensus 289 wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 289 WGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEEECCT
T ss_pred EeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEeeCCC
Confidence 9764311 0 00111111 122345555443 34566678889999997643
No 381
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=77.88 E-value=1.2e+02 Score=35.83 Aligned_cols=101 Identities=11% Similarity=0.100 Sum_probs=53.1
Q ss_pred CeEEEEECCCC-CEEEEEeCCCeEEEEecCCCCceeeeeccC-------CCCeEEEEEccCC-CcEEEEEeC-C-----C
Q 003279 596 WITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGH-------STTVMSLDFHPSK-EDLLCSCDN-N-----S 660 (834)
Q Consensus 596 ~I~~l~fspdg-~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h-------~~~V~sl~fspdg-~~llasgs~-D-----g 660 (834)
.|..|+++|.. ..|+++...+.|+.++-.. .....+..+ ...|.+|+++|.. +.+++.++. . +
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G--~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~ 101 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPST--ETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPN 101 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETTT--TEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCCC--CCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccC
Confidence 79999999863 4566666666665554332 222333221 2458999999854 344444331 0 1
Q ss_pred cEEEEEC-CCCceeeEeecC----------CCeeEEEEecCC-CEEEEEE
Q 003279 661 EIRYWSI-NNGSCAGVFKCQ----------SGATQMRFQPRL-GRILAAA 698 (834)
Q Consensus 661 ~I~lwDl-~s~~~i~~~~~~----------~~i~~l~~sp~g-~~ll~~s 698 (834)
...||.- ..++.-..+... ..+..++++|.. +.++++.
T Consensus 102 ~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~ 151 (737)
T 2cn3_A 102 MGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGT 151 (737)
T ss_dssp CCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEEC
T ss_pred CccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEee
Confidence 2344443 333322222211 124678898854 5566655
No 382
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=77.17 E-value=86 Score=33.92 Aligned_cols=165 Identities=7% Similarity=0.066 Sum_probs=91.1
Q ss_pred cEEEEeCCCC--eEEEEecc------CCCCeEEEEEC---CC----CCEEEEEe-CCCeEEEEecCCCCceeeeec----
Q 003279 575 KAVLWCTESF--TVKSTLEE------HTQWITDVRFS---PS----LSRLATSS-ADRTVRVWDTENPDYSLRTFT---- 634 (834)
Q Consensus 575 ~I~IWd~~t~--~~~~~l~~------h~~~I~~l~fs---pd----g~~Latgs-~Dg~I~IWDl~s~~~~i~~~~---- 634 (834)
+|.+||+.+. +.++++.- ....+.++++. ++ +.+++.+. ...-|.|+|+.+++. .+...
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~s-wRv~~~~~~ 202 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDS-WNVTHPTFK 202 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEE-EEEECGGGS
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcE-EEEccCCCc
Confidence 6888999998 88877642 23457788887 22 33444443 467899999987653 22221
Q ss_pred ----------cC----CCCeEEEEEccC----CCcEEEEEeCCCcEEEEE---CCCC---ceeeEeecC---CCeeEEEE
Q 003279 635 ----------GH----STTVMSLDFHPS----KEDLLCSCDNNSEIRYWS---INNG---SCAGVFKCQ---SGATQMRF 687 (834)
Q Consensus 635 ----------~h----~~~V~sl~fspd----g~~llasgs~Dg~I~lwD---l~s~---~~i~~~~~~---~~i~~l~~ 687 (834)
+. ...|..|+++|+ ++.+.+..-....++-.. +++. ..+..+... .....+++
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 10 236788888887 555555544333444333 1222 122222222 22334566
Q ss_pred ec-CCCEEEEEEcCCeEEEEECCC-C----eEEEEEe-CCCCCEEEEEEcCCCCEEEEEe
Q 003279 688 QP-RLGRILAAAIENYISILDVET-Q----VCRLKLQ-GHKNQVHSVCWNTSGEYLASVS 740 (834)
Q Consensus 688 sp-~g~~ll~~s~dg~I~iwDl~t-~----~~~~~l~-~h~~~I~sl~~spdg~~Lasgs 740 (834)
.+ +|..+++--..+.|..|+..+ . ....... ..-..+..+.+..+|.+.+.+.
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 54 444444445568999999876 1 1111111 2233577888777776555543
No 383
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=73.63 E-value=1.5e+02 Score=34.94 Aligned_cols=103 Identities=12% Similarity=0.086 Sum_probs=57.0
Q ss_pred CeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeEEEEeccC-------CCCeEEEEECC-CCCEEEEEeCC-------Ce
Q 003279 554 KVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSP-SLSRLATSSAD-------RT 617 (834)
Q Consensus 554 ~V~sl~fSpdg-~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h-------~~~I~~l~fsp-dg~~Latgs~D-------g~ 617 (834)
.|..|+++|.. ..|+++...+.|+.++ +.++.-..+..+ ...|.+|+++| +...|+.+... +.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 79999999963 4566666667776665 333333333322 24599999998 33344444321 12
Q ss_pred EEEEecCCCCceeeeec-cC--------CCCeEEEEEccCCCcEEEEEe
Q 003279 618 VRVWDTENPDYSLRTFT-GH--------STTVMSLDFHPSKEDLLCSCD 657 (834)
Q Consensus 618 I~IWDl~s~~~~i~~~~-~h--------~~~V~sl~fspdg~~llasgs 657 (834)
..||.-..+........ .. ...+.+|+++|.....++.+.
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~ 151 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGT 151 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEEC
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEee
Confidence 45666554433222221 11 012467999987655565565
No 384
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=72.15 E-value=1.4e+02 Score=34.01 Aligned_cols=228 Identities=9% Similarity=0.051 Sum_probs=120.1
Q ss_pred CCCCeEEEEEcCCCC-EEEEEeCCCc----------------------------EEEEeCCCCeEEEEeccC--CCC---
Q 003279 551 STSKVESCHFSPDGK-LLATGGHDKK----------------------------AVLWCTESFTVKSTLEEH--TQW--- 596 (834)
Q Consensus 551 H~~~V~sl~fSpdg~-~Lasgs~Dg~----------------------------I~IWd~~t~~~~~~l~~h--~~~--- 596 (834)
|-..+....|.-||+ -|++.+.+|+ |.|+|-.+|+.+.++.-. .+.
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~~ 256 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVSD 256 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGGG
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCcccc
Confidence 566788888888886 4666666665 788888888888765421 111
Q ss_pred ------------eEEEEECC-CCCEEEEEe---CCCeEEEEecCCCCceee-eeccC-----------CCCeEEEEEccC
Q 003279 597 ------------ITDVRFSP-SLSRLATSS---ADRTVRVWDTENPDYSLR-TFTGH-----------STTVMSLDFHPS 648 (834)
Q Consensus 597 ------------I~~l~fsp-dg~~Latgs---~Dg~I~IWDl~s~~~~i~-~~~~h-----------~~~V~sl~fspd 648 (834)
..++++.. +...++.+- ....|..||...++...+ .+... ...+...++.-|
T Consensus 257 WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDgD 336 (591)
T 2zux_A 257 WGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGD 336 (591)
T ss_dssp GTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSSS
T ss_pred cccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCCC
Confidence 23444432 122333332 123477888766543111 11110 023444455556
Q ss_pred CCcEEEEEe----CCCcEEEEECCCCceeeEeecCCCeeEEEEecCC--CEEEEEEcCC----eEEEEECCCCeEEEEEe
Q 003279 649 KEDLLCSCD----NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL--GRILAAAIEN----YISILDVETQVCRLKLQ 718 (834)
Q Consensus 649 g~~llasgs----~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g--~~ll~~s~dg----~I~iwDl~t~~~~~~l~ 718 (834)
|..-|+.|+ .||++ +|... +.|...+....|.|+. -.++.+.+++ ...++|..+++.+....
T Consensus 337 G~dEIv~Gs~~iD~dG~~-L~st~-------~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~ 408 (591)
T 2zux_A 337 GKDEIIFGSMAVDHDGKG-MYSTG-------LGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVY 408 (591)
T ss_dssp SSCEEEETTEEECTTSCE-EEECS-------CCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEEC
T ss_pred CCceEEEeeeEECCCCCE-eeeCC-------CCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEEcC
Confidence 655554443 33433 44442 2344556777788873 4566666542 46678999999998876
Q ss_pred CC--CCCEEEEEEcCCC--CEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEE
Q 003279 719 GH--KNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWN 793 (834)
Q Consensus 719 ~h--~~~I~sl~~spdg--~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~-~L~sgs~dg~I~Iwd 793 (834)
.. .+......|.|+. --+.+ +. .+|+.... .+.... ....-..+-|..+.. .|+- ...|.-|+
T Consensus 409 ~~~d~Gr~~~~Didp~~pG~E~w~--~~--~l~~~~G~----~i~~~~-p~~~N~~i~WdGDl~relld---~~~i~k~~ 476 (591)
T 2zux_A 409 AGKDVGRGMAADIDPRYPGQEVWA--NG--SLYSAKGV----KIGSGV-PSSTNFGIWWDGDLLREQLD---SNRIDKWD 476 (591)
T ss_dssp CSSCCCCEEEECCCTTSSSCEEEE--TT--EEECTTSC----BCSSCC-CSCCSEEECCSSSSSCEEEE---TTEEEEEE
T ss_pred CCCCCCceeEEecCCCCCceEEEe--cC--ceECCCCC----EecCCC-CCCcceeEEECCCCcHhhhC---CceEEecc
Confidence 43 3444444555552 22332 22 35664432 221110 111123456666653 3332 23688888
Q ss_pred CCCCe
Q 003279 794 MTENK 798 (834)
Q Consensus 794 l~~~~ 798 (834)
...++
T Consensus 477 ~~~~~ 481 (591)
T 2zux_A 477 YQNGV 481 (591)
T ss_dssp TTTTE
T ss_pred cCCCc
Confidence 87775
No 385
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=67.93 E-value=94 Score=37.97 Aligned_cols=38 Identities=16% Similarity=0.037 Sum_probs=33.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL 590 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l 590 (834)
..|.+++..++..+|++-+.|++++||++.++.++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 45788888889999999999999999999999998765
No 386
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=62.18 E-value=1.7e+02 Score=31.39 Aligned_cols=267 Identities=9% Similarity=0.050 Sum_probs=131.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-C----------eEEEEecc-CCCCeEEEEECCCCCEEEEEeCC-CeEE
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTES-F----------TVKSTLEE-HTQWITDVRFSPSLSRLATSSAD-RTVR 619 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t-~----------~~~~~l~~-h~~~I~~l~fspdg~~Latgs~D-g~I~ 619 (834)
..|..|+... ...+.-..||.|+.|-... + .....+.. ....|..|+...+ +.+.-..| +.|+
T Consensus 16 ~~v~~ia~G~--~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~--ht~al~~~gg~v~ 91 (406)
T 4d9s_A 16 RKVLIISAGA--SHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGAD--HTVAYSQSGMEVY 91 (406)
T ss_dssp CCEEEEEECS--SEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS--EEEEEETTTTEEE
T ss_pred cceEEEecCC--CeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcc--eEEEEECCCCEEE
Confidence 3566666543 3444555688888884321 1 11122221 2235777776533 33333445 5999
Q ss_pred EEecCCCC--------c--eeeeec-cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc---------e--eeEee
Q 003279 620 VWDTENPD--------Y--SLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---------C--AGVFK 677 (834)
Q Consensus 620 IWDl~s~~--------~--~i~~~~-~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~---------~--i~~~~ 677 (834)
.|-..... . ....+. .....|..|+.- ....+.-..||.|+.|-....- . ...+.
T Consensus 92 ~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G---~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 168 (406)
T 4d9s_A 92 SWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG---DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ 168 (406)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC---SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred EEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEC---hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEec
Confidence 99643211 0 001111 122357777654 2234455679999999764321 0 11111
Q ss_pred c--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC----------e-EEEEEeC-CCCCEEEEEEcCCCCEEEEEeCCe
Q 003279 678 C--QSGATQMRFQPRLGRILAAAIENYISILDVETQ----------V-CRLKLQG-HKNQVHSVCWNTSGEYLASVSDEL 743 (834)
Q Consensus 678 ~--~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~----------~-~~~~l~~-h~~~I~sl~~spdg~~LasgsDg~ 743 (834)
. ...|..++ ....+.++...+|.|+.|-.... . ....+.. ....|..++... ...++...++.
T Consensus 169 ~~~~~~i~~va--~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~-~ht~~l~~~G~ 245 (406)
T 4d9s_A 169 AFEGIRIKMVA--AGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGW-RHTISVSYSGA 245 (406)
T ss_dssp GGTTCCEEEEE--ECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECS-SEEEEEETTCC
T ss_pred ccCCCcEEEEe--cCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECC-CcEEEEcCCCC
Confidence 1 12344443 34567777888999999964321 1 1111211 224566665432 22333444889
Q ss_pred EEEEEcCCCCCc-------ee-EEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC------------eEEEe
Q 003279 744 VRVWSIGSGSKG-------EC-IHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN------------KTLTL 802 (834)
Q Consensus 744 I~IwDl~s~~~~-------~~-i~~~~~-~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~------------~~~~l 802 (834)
|+.|-....... .. ...+.. ....|..++. ...+.++...++.|+.|-.... .+..+
T Consensus 246 v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~--G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v 323 (406)
T 4d9s_A 246 LYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISG--GWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQV 323 (406)
T ss_dssp EEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEE
T ss_pred EEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEe--cCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEE
Confidence 999975432110 01 111111 1233554443 3345666778889999965331 11111
Q ss_pred c-cCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 803 S-AHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 803 ~-~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
. .....|..|+.- ..+.+.-..||.|+.|
T Consensus 324 ~~~~~~~v~~va~G--~~hs~alt~~G~v~~w 353 (406)
T 4d9s_A 324 RFPDDQKVVQVSCG--WRHTLAVTERNNVFAW 353 (406)
T ss_dssp CCGGGCCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred eccCCCcEEEEEeC--CCeEEEEeCCCCEEEe
Confidence 1 123356666543 3344555678888887
No 387
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=58.07 E-value=3.2e+02 Score=33.19 Aligned_cols=38 Identities=16% Similarity=0.344 Sum_probs=33.2
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 003279 681 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 718 (834)
Q Consensus 681 ~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~ 718 (834)
.+.+++..++..++++.+.|+++++|++.++.++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 36677888888999999999999999999999988754
No 388
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=55.78 E-value=1.5e+02 Score=34.06 Aligned_cols=58 Identities=5% Similarity=-0.099 Sum_probs=41.6
Q ss_pred ceEEEEEeCCCCEEEEEEcC------------CeEEEEECCCCeEEEec--cCCCCeEEEEEeCCCCEEEEE
Q 003279 767 KFHSCVFHPTFPSLLVIGCY------------ETLELWNMTENKTLTLS--AHDKLVSSLAASTVNGMVASA 824 (834)
Q Consensus 767 ~I~svafspdg~~L~sgs~d------------g~I~Iwdl~~~~~~~l~--~h~~~V~~lafspdg~~LaSg 824 (834)
..-.|+|++.|.++++-..+ ..+.+.+..++++..+. ....+++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 34678999999955554432 24677777778776433 346789999999999977654
No 389
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=54.99 E-value=1.8e+02 Score=29.35 Aligned_cols=143 Identities=8% Similarity=-0.059 Sum_probs=77.5
Q ss_pred EEEEEeCCCcEEEEeCCCCeE-EEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC---C---Cceee-ee-ccC
Q 003279 566 LLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---P---DYSLR-TF-TGH 636 (834)
Q Consensus 566 ~Lasgs~Dg~I~IWd~~t~~~-~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s---~---~~~i~-~~-~~h 636 (834)
.+++.+.+|.|+--....... ...++.. +.+..+........|+..+..|.++-+.+.. . ...+. .+ ...
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~-D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~ 82 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPP 82 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTT-CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCT
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCC-CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCC
Confidence 455666777776554332111 0123333 3344443333445666677888876665432 1 11110 01 112
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-------CceeeEeecCCCeeEEEEe-cCCCEEEEEEcCCeEEEEEC
Q 003279 637 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQ-PRLGRILAAAIENYISILDV 708 (834)
Q Consensus 637 ~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s-------~~~i~~~~~~~~i~~l~~s-p~g~~ll~~s~dg~I~iwDl 708 (834)
...|.++....++. .++.++..|.++...+.. +.....+...+.+..+... ..+..++..+.+|.+..|++
T Consensus 83 ~e~Iv~~~~~~~~~-~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~ 161 (256)
T 1zvt_A 83 GATVDHMLMESDDQ-KLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPV 161 (256)
T ss_dssp TCCEEEEECCCTTC-EEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEEEeCCCC-EEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEH
Confidence 45676664433334 455778899999988743 2333334334555555555 34568889999999888887
Q ss_pred CC
Q 003279 709 ET 710 (834)
Q Consensus 709 ~t 710 (834)
..
T Consensus 162 ~e 163 (256)
T 1zvt_A 162 SD 163 (256)
T ss_dssp GG
T ss_pred HH
Confidence 53
No 390
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=52.79 E-value=1.6e+02 Score=33.76 Aligned_cols=59 Identities=14% Similarity=0.052 Sum_probs=43.4
Q ss_pred eeEEEEecCCCEEEEEEc------------CCeEEEEECCCCeEEEEEeCC-CCCEEEEEEcCCCCEEEEEe
Q 003279 682 ATQMRFQPRLGRILAAAI------------ENYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS 740 (834)
Q Consensus 682 i~~l~~sp~g~~ll~~s~------------dg~I~iwDl~t~~~~~~l~~h-~~~I~sl~~spdg~~Lasgs 740 (834)
...+.|.++|...++... .+.|..++..+++....+... ...++.++|+||++.|+++-
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 557899999877664432 126788888888776666543 45789999999999888764
No 391
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=52.11 E-value=2.5e+02 Score=30.10 Aligned_cols=232 Identities=9% Similarity=0.095 Sum_probs=115.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC---------e--EEEEecc-CCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESF---------T--VKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRV 620 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~---------~--~~~~l~~-h~~~I~~l~fspdg~~Latgs~Dg~I~I 620 (834)
..|..|+...+. .+|....++.|+.|-.... . ....+.. ....|..|+... ...+.-..||.|+.
T Consensus 68 ~~i~~va~G~~h-t~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~--~h~~alt~~G~v~~ 144 (406)
T 4d9s_A 68 HQIVSVTCGADH-TVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGD--SHCLAVTMEGEVQS 144 (406)
T ss_dssp SCEEEEEECSSE-EEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECS--SEEEEEETTSCEEE
T ss_pred CCEEEEEeCcce-EEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEECh--hheEEEcCCCcEEE
Confidence 357777765432 2333333358999943211 1 1112221 233577777643 45556678999999
Q ss_pred EecCCCCc----------eeeeecc-CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc----------ee-eEeec
Q 003279 621 WDTENPDY----------SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS----------CA-GVFKC 678 (834)
Q Consensus 621 WDl~s~~~----------~i~~~~~-h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~----------~i-~~~~~ 678 (834)
|-...... ....+.. ....|..|+.-. ...+.-..+|.|+.|-....- .. ..+..
T Consensus 145 wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~ 221 (406)
T 4d9s_A 145 WGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGA---EHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTS 221 (406)
T ss_dssp EECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECS---SEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCC
T ss_pred eCCCCCccCCCCCCCCcccceEecccCCCcEEEEecCC---CeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecc
Confidence 97543211 0111111 123566666542 234455679999999754311 00 11111
Q ss_pred --CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-----------eEEEEEeC-CCCCEEEEEEcCCCCEEEEEeCCeE
Q 003279 679 --QSGATQMRFQPRLGRILAAAIENYISILDVETQ-----------VCRLKLQG-HKNQVHSVCWNTSGEYLASVSDELV 744 (834)
Q Consensus 679 --~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~-----------~~~~~l~~-h~~~I~sl~~spdg~~LasgsDg~I 744 (834)
...+..++ ....+.++...+|.|+.|-.... .....+.. ....|..|+.-. ...++...|+.|
T Consensus 222 ~~~~~i~~va--~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~-~hs~alt~~G~v 298 (406)
T 4d9s_A 222 TGGEKMSMVA--CGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGW-RHTMALTSDGKL 298 (406)
T ss_dssp STTCCEEEEE--ECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECS-SEEEEEETTSCE
T ss_pred cCCceEEEEE--ECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecC-CEEEEEcCCCeE
Confidence 12344443 34456777788899999964321 11112221 223466665432 223444458899
Q ss_pred EEEEcCCCCC------c---eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003279 745 RVWSIGSGSK------G---ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 745 ~IwDl~s~~~------~---~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
+.|-...... . .+..........|..++.- ..+.++...++.|+.|-..
T Consensus 299 ~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G--~~hs~alt~~G~v~~wG~n 356 (406)
T 4d9s_A 299 YGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCG--WRHTLAVTERNNVFAWGRG 356 (406)
T ss_dssp EEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEEC--SSEEEEEETTSCEEEEECC
T ss_pred EEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeC--CCeEEEEeCCCCEEEecCC
Confidence 9997543211 0 1111111122345555443 3456677788899999754
No 392
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=51.41 E-value=1.1e+02 Score=35.12 Aligned_cols=59 Identities=14% Similarity=0.062 Sum_probs=42.9
Q ss_pred eeEEEEecCCCEEEEEEcC------------CeEEEEECCCCeEEEEEeCC-CCCEEEEEEcCCCCEEEEEe
Q 003279 682 ATQMRFQPRLGRILAAAIE------------NYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS 740 (834)
Q Consensus 682 i~~l~~sp~g~~ll~~s~d------------g~I~iwDl~t~~~~~~l~~h-~~~I~sl~~spdg~~Lasgs 740 (834)
.-.|+|++.|+.+++-..+ +.+.+++..+++....+.++ ...++.++|+||++.|++.-
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 4568999998855554432 24677787888776666654 46899999999999887653
No 393
>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis domain swapping, cyclin-dependent KIN cycle; 3.00A {Saccharomyces cerevisiae} SCOP: d.97.1.1
Probab=50.54 E-value=3.7 Score=37.63 Aligned_cols=11 Identities=27% Similarity=0.193 Sum_probs=4.9
Q ss_pred hHHHHHHHHHh
Q 003279 25 LHASAKAFQTE 35 (834)
Q Consensus 25 ~~~~A~~~~~e 35 (834)
+.|.-|+-+.|
T Consensus 13 l~d~er~~l~~ 23 (150)
T 1qb3_A 13 LTDQERARVLE 23 (150)
T ss_dssp CCHHHHHHHGG
T ss_pred chHHHHHHHHH
Confidence 44444444443
No 394
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=49.05 E-value=1.5e+02 Score=29.84 Aligned_cols=142 Identities=11% Similarity=0.033 Sum_probs=76.2
Q ss_pred CEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE---CCC----Ccee---eEe
Q 003279 607 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS---INN----GSCA---GVF 676 (834)
Q Consensus 607 ~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwD---l~s----~~~i---~~~ 676 (834)
..+++.+.+|.|+--...........+.. .+.+..+........++ ..+..|.++-+. +.. |..+ ..+
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~~~~~lke-~D~l~~~~~~~t~~~ll-~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L 80 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDAPGLNYKA-GDSFKAAVKGKSNQPVV-FVDSTGRSYAIDPITLPSARGQGEPLTGKLTL 80 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCSTTSCCCT-TCCEEEEEEEETTSCEE-EEETTSEEEEECGGGSCCSSSCCEEGGGTCCC
T ss_pred CEEEEEeCCCEEEEeeCCcCCceeccCCC-CCEEEEEEEeCCCCEEE-EEeCCCeEEEEEHHHCCCcCCCCeEeeeeecC
Confidence 34667778888876655432111112232 33444444333334455 445577766554 322 2211 112
Q ss_pred ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC-------CeEEEEEeCCCCCEEEEEEc--CCCCEEEEEeCCeEEEE
Q 003279 677 KCQSGATQMRFQPRLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWN--TSGEYLASVSDELVRVW 747 (834)
Q Consensus 677 ~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t-------~~~~~~l~~h~~~I~sl~~s--pdg~~LasgsDg~I~Iw 747 (834)
.....|..+....++.+++.++..|.++...+.. +.....+.. .+.+..+... .+..+++.+.+|.+..+
T Consensus 81 ~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~lrf 159 (256)
T 1zvt_A 81 PPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMF 159 (256)
T ss_dssp CTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEE
T ss_pred CCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEEEE
Confidence 2345566664444567899999999999987742 344444443 2445454444 33334444448988888
Q ss_pred EcCC
Q 003279 748 SIGS 751 (834)
Q Consensus 748 Dl~s 751 (834)
++..
T Consensus 160 ~~~e 163 (256)
T 1zvt_A 160 PVSD 163 (256)
T ss_dssp EGGG
T ss_pred EHHH
Confidence 8754
No 395
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=48.67 E-value=3.9e+02 Score=31.39 Aligned_cols=147 Identities=8% Similarity=0.137 Sum_probs=70.3
Q ss_pred CCCCeEEEEECCCC-CEEEEEeCCCeEEEEecCCCCceeeeecc------------CCCCeEEEEEccCC-CcEEEEEeC
Q 003279 593 HTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTG------------HSTTVMSLDFHPSK-EDLLCSCDN 658 (834)
Q Consensus 593 h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~s~~~~i~~~~~------------h~~~V~sl~fspdg-~~llasgs~ 658 (834)
-.+.|.+|+++|.+ ..++++...+.|...+ .+......+.. ....|.+|+++|.. +.+++.++.
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~--DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~ 96 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWN--AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGD 96 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECS
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEEC--CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecc
Confidence 45689999999965 5666666666554443 22222222211 22458999999854 334443331
Q ss_pred ----CCcEEEE-ECCCCceeeEeecC--------CC-e-eEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEeC---
Q 003279 659 ----NSEIRYW-SINNGSCAGVFKCQ--------SG-A-TQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG--- 719 (834)
Q Consensus 659 ----Dg~I~lw-Dl~s~~~i~~~~~~--------~~-i-~~l~~sp~g-~~ll~~s~dg~I~iwDl~t~~~~~~l~~--- 719 (834)
.....|| ....|+.=..+... .. + ..++++|.. +.+++++..+.|.. ....++.-..+..
T Consensus 97 ~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~~-S~DgG~TW~~~~~~~~ 175 (763)
T 3a0f_A 97 YVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWR-STDRAQTWSRMNQLPD 175 (763)
T ss_dssp CTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEEE-ESSTTSSCEECTTSCC
T ss_pred cccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEEE-ECCCCcCccccccCcc
Confidence 0112333 33334322222211 11 1 368888753 45555555443332 2222221111111
Q ss_pred ---CCCCEEEEEEcCCC--CEEEEEeCC
Q 003279 720 ---HKNQVHSVCWNTSG--EYLASVSDE 742 (834)
Q Consensus 720 ---h~~~I~sl~~spdg--~~LasgsDg 742 (834)
....+..|+++|.. .+++...++
T Consensus 176 ~~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 176 SSTYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp CSCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred cCCCccceEEEEECCCCCCEEEEEEeCC
Confidence 11347788998753 344444443
No 396
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=48.33 E-value=1.2e+02 Score=26.26 Aligned_cols=60 Identities=10% Similarity=-0.055 Sum_probs=30.7
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEeCC-CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003279 691 LGRILAAAIENYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVSDELVRVWSIGS 751 (834)
Q Consensus 691 g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h-~~~I~sl~~spdg~~LasgsDg~I~IwDl~s 751 (834)
+.+.+.-..||.+.+|+...+..+..-... ......+.+..+|.+++...++.+ +|...+
T Consensus 24 g~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~d~~~~~-iW~S~t 84 (113)
T 3mez_B 24 RDYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDITDDRLNT-VFVSNT 84 (113)
T ss_dssp TTEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEECTTSCE-EEECSC
T ss_pred CCEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEECCCCCE-EEECCC
Confidence 344444455555666654333333332211 112235677778887776555544 787554
No 397
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=46.77 E-value=3.2e+02 Score=29.89 Aligned_cols=147 Identities=15% Similarity=0.118 Sum_probs=73.0
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCcEEEEECC---CCce---------e---eEeecCC--CeeEEEEecCCCEEEEEEcC
Q 003279 638 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSC---------A---GVFKCQS--GATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasgs~Dg~I~lwDl~---s~~~---------i---~~~~~~~--~i~~l~~sp~g~~ll~~s~d 700 (834)
..|..|+... ...+.-..+|.|+.|-.. .+.. . ..+.... .|..++ ....+.++...+
T Consensus 148 ~~i~~va~G~---~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va--~G~~hs~alt~~ 222 (473)
T 3of7_A 148 HKVVQLAATD---NMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLA--PGKDHILFLDEE 222 (473)
T ss_dssp CCEEEEEECS---SEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEE--ECSSEEEEEETT
T ss_pred CcEEEEEccC---CEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEE--ecCCeEEEEeCC
Confidence 4566666542 233445668999999751 1110 0 0111111 244444 345677788889
Q ss_pred CeEEEEECCCC-eE--------------EEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCC------c---e
Q 003279 701 NYISILDVETQ-VC--------------RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK------G---E 756 (834)
Q Consensus 701 g~I~iwDl~t~-~~--------------~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~------~---~ 756 (834)
|.|+.|-.... .. ...+ ....|..|+.. ....++...+|.|+.|-...... . .
T Consensus 223 G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~--~~~~v~~Ia~G-~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~ 299 (473)
T 3of7_A 223 GMVFAWGNGQQNQLGRKVMERFRLKTLDPRPF--GLRHVKYIASG-ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGA 299 (473)
T ss_dssp SCEEEEECCTTSTTSSCCCGGGTTTTCSCEEC--SCCSEEEEEEC-SSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTC
T ss_pred CeEEEEeCCCCCCCCCCccccccccccCceec--CCcceEEEecC-CCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCc
Confidence 99999965421 00 0011 11356666543 22234444488899997543210 0 0
Q ss_pred eE---EEee-cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 757 CI---HELS-CTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 757 ~i---~~~~-~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
.+ ..+. .....|..++.. ..+.++...+|.|+.|-.
T Consensus 300 ~~~~P~~v~~~~~~~i~~ia~G--~~hs~~lt~~G~v~~wG~ 339 (473)
T 3of7_A 300 LVTKPKRLALPDNVVIRSIAAG--EHHSLILSQDGDLYSCGR 339 (473)
T ss_dssp EEEEEEECCCCTTCCEEEEEEC--SSEEEEEETTSCEEEEEE
T ss_pred eeeccccccccCCccEEEEEeC--CCeEEEEeCCCeEEEEEC
Confidence 11 1111 112345555443 334556677888888864
No 398
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=44.54 E-value=1.3e+02 Score=25.87 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=25.3
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003279 726 SVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 782 (834)
Q Consensus 726 sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~s 782 (834)
.+.+..||.+++...++. .||...+.. ......+.+.++|.+++.
T Consensus 54 ~L~l~~dGnLvL~d~~~~-~vWss~t~~-----------~~~~~~l~L~ddGNlVly 98 (105)
T 4h3o_A 54 SAVLQSDGNFVVYDSSGR-SLWASHSTR-----------GSGNYILILQDDGNVIIY 98 (105)
T ss_dssp EEEECTTSCEEEECTTCC-EEEECCCCC-----------CSSCEEEEECTTSCEEEE
T ss_pred EEEEeCCccEEEECCCcE-EEEEecCCC-----------CCCCEEEEEeCCCeEEEE
Confidence 467778888776655554 367654321 111233456667766554
No 399
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=43.00 E-value=3.4e+02 Score=29.00 Aligned_cols=226 Identities=10% Similarity=0.058 Sum_probs=115.3
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc------------eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 003279 595 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 662 (834)
Q Consensus 595 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~------------~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 662 (834)
..|..|+... ...+.-..||.|+.|-...... ....+ .....|..|+.-. ...+.-..||.|
T Consensus 59 ~~i~~va~G~--~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v-~l~~~i~~va~G~---~hs~alt~~G~v 132 (413)
T 1a12_A 59 EDVVQAEAGG--MHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKV-ELQEKVVQVSAGD---SHTAALTDDGRV 132 (413)
T ss_dssp SCEEEEEECS--SEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEEC-CCCSCEEEEEECS---SEEEEEETTSCE
T ss_pred CCeEEEEeCC--CeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEe-cCCCcEEEEecCC---CeEEEEcCCCcE
Confidence 5677777643 3555556899999996543110 00111 1123566666542 234455678999
Q ss_pred EEEEC--CC-Cce-----------eeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-e---------------
Q 003279 663 RYWSI--NN-GSC-----------AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-V--------------- 712 (834)
Q Consensus 663 ~lwDl--~s-~~~-----------i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~-~--------------- 712 (834)
+.|-. +. +.+ ...+.....|..++. ...+.++...+|.|+.|=.... +
T Consensus 133 ~~wG~~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~ 210 (413)
T 1a12_A 133 FLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVAS--GNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQ 210 (413)
T ss_dssp EEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGG
T ss_pred EEeeCCcCCCCccCcCCccccccCCEEecCCCCEEEEEe--cCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccc
Confidence 99975 21 110 111112234444443 4457777788899999965431 0
Q ss_pred -------E-EEEEeC----CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCC-------cee-EEEeecC-C--CceE
Q 003279 713 -------C-RLKLQG----HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK-------GEC-IHELSCT-G--NKFH 769 (834)
Q Consensus 713 -------~-~~~l~~----h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~-------~~~-i~~~~~~-~--~~I~ 769 (834)
+ ...+.. ....|..|+...+ ..++...+|.|+.|-...... ... ...+... . ..|.
T Consensus 211 ~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~-hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~ 289 (413)
T 1a12_A 211 GLERLLVPKCVMLKSRGSRGHVRFQDAFCGAY-FTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWV 289 (413)
T ss_dssp GHHHHHSCEECCCBCSSCCSBCCEEEEEEETT-EEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEE
T ss_pred cccccccCceEeeccccccCCccEEEEEeCCC-EEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEE
Confidence 0 001110 1245666665432 234444588999997654211 000 1111111 1 2355
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCC----------Ce-EE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 770 SCVFHPTFPSLLVIGCYETLELWNMTE----------NK-TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 770 svafspdg~~L~sgs~dg~I~Iwdl~~----------~~-~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
.++.. ..+.++...++.|+.|-... .. .. ........|..|+.. ..+.+.-..||.|+.|
T Consensus 290 ~ia~G--~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~~v~~v~~G--~~hs~alt~~G~v~~w 361 (413)
T 1a12_A 290 GFSGG--QHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACG--ASVGYAVTKDGRVFAW 361 (413)
T ss_dssp EEEEC--SSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred EEecc--cceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccCceeEEEEC--cceEEEEeCCCCEEEe
Confidence 55443 34566677888999996532 11 11 111222367666654 3344555678888887
No 400
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=40.98 E-value=5.5e+02 Score=31.76 Aligned_cols=37 Identities=16% Similarity=0.363 Sum_probs=31.8
Q ss_pred eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 003279 682 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 718 (834)
Q Consensus 682 i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~ 718 (834)
+.+++..++..++++.+.|+++++|++.++.++.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 4556677788999999999999999999999988754
No 401
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=39.21 E-value=3.8e+02 Score=31.42 Aligned_cols=36 Identities=14% Similarity=0.360 Sum_probs=25.6
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec
Q 003279 723 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 763 (834)
Q Consensus 723 ~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~ 763 (834)
.|.++.+ +..++++-+ |.++|+|+++++ .++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~---~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSF---TLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTT---EEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCC---ceEEeecc
Confidence 3555544 466877777 999999999998 55555443
No 402
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=35.00 E-value=1.1e+02 Score=35.00 Aligned_cols=59 Identities=7% Similarity=-0.069 Sum_probs=42.4
Q ss_pred CceEEEEEeCCCCEEEEEEc------------CCeEEEEECCCCeEEEecc--CCCCeEEEEEeCCCCEEEEE
Q 003279 766 NKFHSCVFHPTFPSLLVIGC------------YETLELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASA 824 (834)
Q Consensus 766 ~~I~svafspdg~~L~sgs~------------dg~I~Iwdl~~~~~~~l~~--h~~~V~~lafspdg~~LaSg 824 (834)
.....|+|+++|.+.++... ...|+.++..++++..+.. ....++.++|+||++.|+++
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 45678899999986554332 1267888888888765442 34679999999999977665
No 403
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=30.61 E-value=7.1e+02 Score=29.11 Aligned_cols=149 Identities=11% Similarity=0.108 Sum_probs=75.0
Q ss_pred CCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeEEEEecc------------CCCCeEEEEECCC-CCEEEEEeCC-
Q 003279 551 STSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEE------------HTQWITDVRFSPS-LSRLATSSAD- 615 (834)
Q Consensus 551 H~~~V~sl~fSpdg-~~Lasgs~Dg~I~IWd~~t~~~~~~l~~------------h~~~I~~l~fspd-g~~Latgs~D- 615 (834)
-.+.|.+|.++|.+ ..++++...+.|...+ +.++.-..+.. ....|.+|+++|. ...++.+..+
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~ 97 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDY 97 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSC
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccc
Confidence 45679999999965 5666676667665554 33333333221 2245899999883 3444443321
Q ss_pred ----CeEEEEecCCCCceeeeecc-C------CC--CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-----
Q 003279 616 ----RTVRVWDTENPDYSLRTFTG-H------ST--TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----- 677 (834)
Q Consensus 616 ----g~I~IWDl~s~~~~i~~~~~-h------~~--~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~----- 677 (834)
....||.-..+......... . .+ ....|+++|.....++.+..++.|. .....|+.=..+.
T Consensus 98 ~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~-~S~DgG~TW~~~~~~~~~ 176 (763)
T 3a0f_A 98 VQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLW-RSTDRAQTWSRMNQLPDS 176 (763)
T ss_dssp TTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEE-EESSTTSSCEECTTSCCC
T ss_pred ccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEE-EECCCCcCccccccCccc
Confidence 12445544433322222211 0 11 1246888886544454555444333 2222232211111
Q ss_pred --cCCCeeEEEEecCC-CEEEEEEcCC
Q 003279 678 --CQSGATQMRFQPRL-GRILAAAIEN 701 (834)
Q Consensus 678 --~~~~i~~l~~sp~g-~~ll~~s~dg 701 (834)
....+..+.++|.. ..++++..++
T Consensus 177 ~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 177 STYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp SCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred CCCccceEEEEECCCCCCEEEEEEeCC
Confidence 01346788888753 4566666654
No 404
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=29.79 E-value=48 Score=27.52 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhcCCCCC
Q 003279 10 KMLDVYIYDYLLKRKLHASAKAFQTEGKVSTD 41 (834)
Q Consensus 10 ~~L~~yiy~yl~k~~~~~~A~~~~~e~~~~~~ 41 (834)
.+++.-|-|||.-++|.-|...|..|++.+..
T Consensus 19 rLi~~LVrEyLef~~l~~TlsVf~pEs~l~~~ 50 (82)
T 2d68_A 19 RLVASLVAEFLQFFNLDFTLAVFQPETSTLQG 50 (82)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHcCCcchHHhhhhccCCCCC
Confidence 47899999999999999999999999999853
No 405
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=29.20 E-value=1.3e+02 Score=37.50 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=29.2
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 767 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 767 ~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
.+.+++..++..++++.+.|++++||++.++.++
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v 272 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 272 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeE
Confidence 4455667788899999999999999999999877
No 406
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=25.92 E-value=7.7e+02 Score=27.99 Aligned_cols=153 Identities=11% Similarity=0.150 Sum_probs=79.2
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCCCc----------------------------EEEEECCCCceeeEeecC---CC---
Q 003279 636 HSTTVMSLDFHPSKEDLLCSCDNNSE----------------------------IRYWSINNGSCAGVFKCQ---SG--- 681 (834)
Q Consensus 636 h~~~V~sl~fspdg~~llasgs~Dg~----------------------------I~lwDl~s~~~i~~~~~~---~~--- 681 (834)
|...+...+|.-||..=++....+|+ |.++|=.+|+.+..+... ..
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~~ 256 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVSD 256 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGGG
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCcccc
Confidence 44556666777777655555554554 788888888887776542 11
Q ss_pred ------------eeEEEEe-cCCCEEEEEE---cCCeEEEEECCCCeEEE--EEeCCC-----------CCEEEEEEcCC
Q 003279 682 ------------ATQMRFQ-PRLGRILAAA---IENYISILDVETQVCRL--KLQGHK-----------NQVHSVCWNTS 732 (834)
Q Consensus 682 ------------i~~l~~s-p~g~~ll~~s---~dg~I~iwDl~t~~~~~--~l~~h~-----------~~I~sl~~spd 732 (834)
..++++. -+...++++- ....|..||.+.++... .+.... ..+.-..++-|
T Consensus 257 WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDgD 336 (591)
T 2zux_A 257 WGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGD 336 (591)
T ss_dssp GTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSSS
T ss_pred cccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCCC
Confidence 1223221 1222344332 12358889988776533 333211 12233333444
Q ss_pred CC--EEEEEe----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC--CEEEEEEcCC----eEEEEECCCCeEE
Q 003279 733 GE--YLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF--PSLLVIGCYE----TLELWNMTENKTL 800 (834)
Q Consensus 733 g~--~Lasgs----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg--~~L~sgs~dg----~I~Iwdl~~~~~~ 800 (834)
|+ +++.+. ||+ .+|.... .|...+....|.|+. -.++.+..++ -..+.|..+++++
T Consensus 337 G~dEIv~Gs~~iD~dG~-~L~st~~-----------gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vl 404 (591)
T 2zux_A 337 GKDEIIFGSMAVDHDGK-GMYSTGL-----------GHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKIL 404 (591)
T ss_dssp SSCEEEETTEEECTTSC-EEEECSC-----------CCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEE
T ss_pred CCceEEEeeeEECCCCC-EeeeCCC-----------CCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEE
Confidence 43 222111 332 3555421 466666666777763 3555555431 3455777777776
No 407
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=25.07 E-value=90 Score=36.73 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=30.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE 592 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~ 592 (834)
..|.|+.+ +..+|++-+.|+++++|++.++.++.+..-
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34666655 367999999999999999999998877643
No 408
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A*
Probab=24.41 E-value=3.3e+02 Score=23.18 Aligned_cols=25 Identities=8% Similarity=0.341 Sum_probs=15.3
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003279 726 SVCWNTSGEYLASVSDELVRVWSIGS 751 (834)
Q Consensus 726 sl~~spdg~~LasgsDg~I~IwDl~s 751 (834)
.+.+..+|.+++...++. .+|...+
T Consensus 53 ~l~l~~dGNLvl~~~~~~-~~W~S~t 77 (109)
T 3dzw_A 53 HLSMQSDGNLVVYSPRNN-PIWASNT 77 (109)
T ss_dssp EEEECTTSCEEEECTTSC-EEEECCC
T ss_pred EEEEeCCCCEEEECCCCC-EEEECCC
Confidence 466777888776544443 4776443
No 409
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=24.38 E-value=7.1e+02 Score=27.03 Aligned_cols=191 Identities=9% Similarity=0.008 Sum_probs=94.7
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecC---CC-------C--c--eeeeecc-CCCCeEEEEEccCCCcEEEEEeCC
Q 003279 595 QWITDVRFSPSLSRLATSSADRTVRVWDTE---NP-------D--Y--SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNN 659 (834)
Q Consensus 595 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~---s~-------~--~--~i~~~~~-h~~~V~sl~fspdg~~llasgs~D 659 (834)
..|..|+... ...+.-..||.|+.|-.. .+ . . ....+.. ....|..|+.-. ...+.-..+
T Consensus 148 ~~i~~va~G~--~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~---~hs~alt~~ 222 (473)
T 3of7_A 148 HKVVQLAATD--NMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGK---DHILFLDEE 222 (473)
T ss_dssp CCEEEEEECS--SEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECS---SEEEEEETT
T ss_pred CcEEEEEccC--CEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecC---CeEEEEeCC
Confidence 4566776653 345555689999999751 00 0 0 0011111 123466666542 234455678
Q ss_pred CcEEEEECCCCceee--------------EeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC------------eE
Q 003279 660 SEIRYWSINNGSCAG--------------VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ------------VC 713 (834)
Q Consensus 660 g~I~lwDl~s~~~i~--------------~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~------------~~ 713 (834)
|.|+.|-....-.+. .......|..++. ...+.++...+|.|+.|-.... ..
T Consensus 223 G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~--G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~ 300 (473)
T 3of7_A 223 GMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIAS--GENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGAL 300 (473)
T ss_dssp SCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEE--CSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCE
T ss_pred CeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEec--CCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCce
Confidence 999999764321100 0000123444433 3456777778899999854321 11
Q ss_pred E---EEEeC-CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCc-------------------eeEE-Eeec-CCCce
Q 003279 714 R---LKLQG-HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKG-------------------ECIH-ELSC-TGNKF 768 (834)
Q Consensus 714 ~---~~l~~-h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~-------------------~~i~-~~~~-~~~~I 768 (834)
+ ..+.. ....|..|+.... ..++...+|.|+.|-....... .... .... ....|
T Consensus 301 ~~~P~~v~~~~~~~i~~ia~G~~-hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~v 379 (473)
T 3of7_A 301 VTKPKRLALPDNVVIRSIAAGEH-HSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKF 379 (473)
T ss_dssp EEEEEECCCCTTCCEEEEEECSS-EEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSCCE
T ss_pred eeccccccccCCccEEEEEeCCC-eEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCCce
Confidence 1 11111 1235666665322 2333344888888875432110 0000 0111 11145
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003279 769 HSCVFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 769 ~svafspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
..|+.- ..+.++...+|.|+.|-..
T Consensus 380 ~~Ia~G--~~hs~al~~~G~vy~wG~n 404 (473)
T 3of7_A 380 KSVAAG--SHHSVAVAQNGIAYSWGFG 404 (473)
T ss_dssp EEEEEC--SSEEEEEETTSCEEEEECC
T ss_pred EEEEeC--CCeEEEEeCCCcEEEeeCC
Confidence 555443 3456677888999999654
No 410
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=21.75 E-value=9.3e+02 Score=27.47 Aligned_cols=239 Identities=12% Similarity=0.110 Sum_probs=120.8
Q ss_pred CCCCeEEEEEcCCCC-EEEEEeCCCc----------------------------EEEEeCCCCeEEEEeccC--CC----
Q 003279 551 STSKVESCHFSPDGK-LLATGGHDKK----------------------------AVLWCTESFTVKSTLEEH--TQ---- 595 (834)
Q Consensus 551 H~~~V~sl~fSpdg~-~Lasgs~Dg~----------------------------I~IWd~~t~~~~~~l~~h--~~---- 595 (834)
|-..+....|.-||+ -|++.+.+|+ +.|+|-.+++.+.++.-. .+
T Consensus 181 hyt~~~V~DlDGDGkaEIvv~TadGt~dg~g~vigd~~~dyr~~~g~il~G~eyL~vfdG~TG~~l~t~~~~p~rg~~~~ 260 (620)
T 2zuy_A 181 HYTQFMVYDLDGDGKAEIAMKTADGTTDGKGHIIGDEQADFRNEQGRILSGPEYLTVFKGETGEALTTVEYEPPRGKLED 260 (620)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSCTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCSGGG
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCcceeecccccccccccceEecCCeEEEEEcCCCcceeeecccCCCcCcccc
Confidence 666788888888886 3666666665 588888888887665321 11
Q ss_pred -----------CeEEEEECC-CCCEEEEEe---CCCeEEEEecCCCCceee-eec----------c-CCCCeEEEEEccC
Q 003279 596 -----------WITDVRFSP-SLSRLATSS---ADRTVRVWDTENPDYSLR-TFT----------G-HSTTVMSLDFHPS 648 (834)
Q Consensus 596 -----------~I~~l~fsp-dg~~Latgs---~Dg~I~IWDl~s~~~~i~-~~~----------~-h~~~V~sl~fspd 648 (834)
...++++.. +...++.+- ....|..||+..++.... .+. + -...+...++.-|
T Consensus 261 WGD~yGnR~drf~~~vayLDG~~Ps~v~~rG~Ytr~~v~A~d~~~g~L~~~W~~ds~~~~~~~~~gqg~H~~svaDVDGD 340 (620)
T 2zuy_A 261 WGDGYGNRMDRFLAGTAYLDGERPSLVMARGYYTRTVLVAYDFRNGRLKKRWVFDSNQPGHEAYAGQGNHSLSVADVDGD 340 (620)
T ss_dssp GTSSSSTTTTCEEEEEECTTCC-CEEEEEECSSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGTTCCCSSCEEECCSSS
T ss_pred ccccccccccccceeEEecCCCCceEEEecCcccceeEEEEEccCCceeeeeEecCCCCcccccccccCcCceEEecCCC
Confidence 123344432 112233322 123466777765432111 111 1 0012333445556
Q ss_pred CCcEEEEEeCCCcEEEEECCCCceeeEe--ecCCCeeEEEEecC--CCEEEEEEcC----CeEEEEECCCCeEEEEEeCC
Q 003279 649 KEDLLCSCDNNSEIRYWSINNGSCAGVF--KCQSGATQMRFQPR--LGRILAAAIE----NYISILDVETQVCRLKLQGH 720 (834)
Q Consensus 649 g~~llasgs~Dg~I~lwDl~s~~~i~~~--~~~~~i~~l~~sp~--g~~ll~~s~d----g~I~iwDl~t~~~~~~l~~h 720 (834)
|..-++.++ .++| .+|+.+... .|...+....|.|+ +-.++.+.++ ....++|.++++.+......
T Consensus 341 G~dEIv~Gs-----~~iD-~dG~~L~st~~gHGDa~hv~d~dP~rpGlev~~~~E~~~~~~G~~~~DA~tG~vlw~~~~~ 414 (620)
T 2zuy_A 341 GKDEIIYGA-----MAVD-HDGTGLYSTGLGHGDAMHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGEILWGVHAG 414 (620)
T ss_dssp SSCEEEETT-----EEEC-TTSSEEEECSCCCCSCEEEECSCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCS
T ss_pred CceeEEEee-----eEEC-CCCCEEeecCCCCCceeEEEecCCCCCCCEEEEEecCCCCCCceEEEECCCCcEEEEecCc
Confidence 655554443 1223 223333332 23445666667776 3345555443 26788999999999887653
Q ss_pred --CCCEEEEEEcCC--CCEEEEEe-C---C-eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcC----
Q 003279 721 --KNQVHSVCWNTS--GEYLASVS-D---E-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCY---- 786 (834)
Q Consensus 721 --~~~I~sl~~spd--g~~Lasgs-D---g-~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg-~~L~sgs~d---- 786 (834)
.+....-.|.|+ |--+.+.. + . .-.+|+... +.+.... ....-..+-|..|. +.++-.+.+
T Consensus 415 ~D~Gr~~~~Didp~~pG~E~w~~~~~~~~~~~~~l~~~~G----~~i~~~~-p~~~N~~i~WdGDl~re~ld~~~~~~~~ 489 (620)
T 2zuy_A 415 TDVGRGMAAHIDPSYKGSLVWGIDPPGNDGMSYGLFTSKG----EKISDKA-PSSANFAIWWDGDLVRELLDHDWDGTIG 489 (620)
T ss_dssp SCCCEEEEECCCTTSSSCEEEEECCTTSCCCEEEEEETTC----CEEESSC-CSCCSEEECCSSSSSCEEEEEEECSSCE
T ss_pred ccCCceEEEecCCCCCceEEEEecccccccCCCceECCCC----CCccCCC-CCCcceEEEECCCccHhhhCCccccccC
Confidence 333344455554 33333332 1 1 335777543 2332111 11112344565554 345545444
Q ss_pred -CeEEEEECCCCeEE
Q 003279 787 -ETLELWNMTENKTL 800 (834)
Q Consensus 787 -g~I~Iwdl~~~~~~ 800 (834)
..|.-|+...++..
T Consensus 490 ~~~i~k~~~~~~~~~ 504 (620)
T 2zuy_A 490 RPKIEKWDAENGCLK 504 (620)
T ss_dssp EEEEEEEETTTTEEE
T ss_pred CceEEeccCCCCcee
Confidence 57888888777544
No 411
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=20.75 E-value=1.3e+02 Score=25.99 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=14.1
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEEc
Q 003279 726 SVCWNTSGEYLASVSDELVRVWSI 749 (834)
Q Consensus 726 sl~~spdg~~LasgsDg~I~IwDl 749 (834)
.+.+..+|.+++...++.+.+|..
T Consensus 53 ~l~l~~dGNLVl~~~~~~~~vW~S 76 (111)
T 3mez_A 53 TLRLNNRGQLEIHSANSNTPVWVY 76 (111)
T ss_dssp EEEECTTSCEEEECSSCSSCSEEE
T ss_pred EEEEcCCCcEEEEeCCCCEEEEEe
Confidence 456667777766544444446643
Done!