Your job contains 1 sequence.
>003281
MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV
VRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATG
VSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPE
FSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTA
KGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKP
AQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVV
SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPIL
AVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGR
ADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNG
DGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVD
QNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDK
LKSGDSTSFALKAENIIPKPEMTYTGTGNIGSRQTAPVVANYVGNNSNAGAASGLLANQM
GQYGNQYSGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGA
GIATSSECYKCHKTGHWARDCPSLNAAPPAYGSSGIGISAAGYRGAPRQQVGGF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 003281
(834 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2163553 - symbol:RPA70C species:3702 "Arabidop... 1905 2.3e-223 3
TAIR|locus:2134766 - symbol:AT4G19130 species:3702 "Arabi... 2007 4.5e-211 2
TAIR|locus:2054577 - symbol:RPA1A "replication protein A ... 1647 4.9e-181 2
UNIPROTKB|Q65XV7 - symbol:P0016H04.11 "Os05g0111000 prote... 1525 4.1e-173 2
UNIPROTKB|Q9AVL8 - symbol:OsRPA70a "Replication protein A... 1537 1.1e-168 2
UNIPROTKB|P27694 - symbol:RPA1 "Replication protein A 70 ... 858 8.9e-95 3
UNIPROTKB|Q0VCV0 - symbol:RPA1 "Replication protein A1, 7... 851 1.9e-91 2
UNIPROTKB|Q5ZJJ2 - symbol:RPA1 "Replication protein A 70 ... 839 1.3e-90 2
ZFIN|ZDB-GENE-030912-3 - symbol:rpa1 "replication protein... 842 9.0e-90 2
UNIPROTKB|E2R436 - symbol:RPA1 "Uncharacterized protein" ... 826 9.0e-90 2
UNIPROTKB|F1RHH4 - symbol:RPA1 "Uncharacterized protein" ... 832 2.4e-89 2
UNIPROTKB|I3LHB2 - symbol:RPA1 "Uncharacterized protein" ... 832 3.9e-89 2
MGI|MGI:1915525 - symbol:Rpa1 "replication protein A1" sp... 812 2.1e-88 2
ASPGD|ASPL0000065893 - symbol:AN7423 species:162425 "Emer... 779 1.9e-87 2
POMBASE|SPBC660.13c - symbol:ssb1 "DNA replication factor... 720 1.2e-83 2
RGD|1307376 - symbol:Rpa1 "replication protein A1" specie... 490 2.8e-83 3
TAIR|locus:2142808 - symbol:RPA70B "RPA70-kDa subunit B" ... 760 3.2e-79 2
TAIR|locus:2173527 - symbol:RPA70D species:3702 "Arabidop... 743 9.5e-78 2
FB|FBgn0010173 - symbol:RpA-70 "Replication Protein A 70"... 716 1.2e-77 2
SGD|S000000065 - symbol:RFA1 "Subunit of heterotrimeric R... 756 2.5e-77 2
CGD|CAL0004564 - symbol:RFA1 species:5476 "Candida albica... 734 1.2e-72 1
UNIPROTKB|I3LSJ9 - symbol:I3LSJ9 "Uncharacterized protein... 480 7.9e-63 3
WB|WBGene00017546 - symbol:rpa-1 species:6239 "Caenorhabd... 499 7.1e-49 2
UNIPROTKB|Q19537 - symbol:rpa-1 "Probable replication fac... 499 7.1e-49 2
GENEDB_PFALCIPARUM|PFD0470c - symbol:PFD0470c "replicatio... 492 8.7e-44 1
UNIPROTKB|Q9U0J0 - symbol:PFD0470c "Replication factor a ... 492 8.7e-44 1
DICTYBASE|DDB_G0289513 - symbol:rfa1 "putative replicatio... 299 4.7e-23 1
TAIR|locus:2011521 - symbol:AT1G52950 "AT1G52950" species... 198 3.5e-12 1
TAIR|locus:2047092 - symbol:GRP2B "glycine-rich protein 2... 152 9.9e-10 1
WB|WBGene00019537 - symbol:K08D12.3 species:6239 "Caenorh... 123 1.3e-06 1
FB|FBgn0034802 - symbol:CG3800 species:7227 "Drosophila m... 122 1.6e-06 1
TAIR|locus:1005716636 - symbol:AT2G05642 "AT2G05642" spec... 99 6.0e-06 3
ASPGD|ASPL0000040986 - symbol:AN9093 species:162425 "Emer... 131 9.6e-06 1
TAIR|locus:2078526 - symbol:AT3G42860 species:3702 "Arabi... 135 1.2e-05 1
ASPGD|ASPL0000028407 - symbol:AN5111 species:162425 "Emer... 120 2.1e-05 1
TAIR|locus:2827810 - symbol:CSP3 "cold shock domain prote... 126 0.00017 2
WB|WBGene00019858 - symbol:R03H10.6 species:6239 "Caenorh... 123 0.00020 1
CGD|CAL0002417 - symbol:GIS2 species:5476 "Candida albica... 113 0.00031 1
UNIPROTKB|Q59YJ9 - symbol:GIS2 "Putative uncharacterized ... 113 0.00031 1
TAIR|locus:2121219 - symbol:GRP2 "AT4G38680" species:3702... 116 0.00032 1
UNIPROTKB|G4N4A8 - symbol:MGG_05948 "Zinc knuckle domain-... 115 0.00039 1
TAIR|locus:2135139 - symbol:CSDP1 "cold shock domain prot... 119 0.00040 2
ZFIN|ZDB-GENE-030131-5045 - symbol:cnbpa "CCHC-type zinc ... 109 0.00059 1
>TAIR|locus:2163553 [details] [associations]
symbol:RPA70C species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006260 "DNA replication" evidence=IEA;ISS] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR004365
InterPro:IPR004591 InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057
SMART:SM00343 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AB018113 InterPro:IPR013955
Pfam:PF08646 eggNOG:COG1599 KO:K07466 TIGRFAMs:TIGR00617
HOGENOM:HOG000162322 HSSP:P27694 OMA:RWTIKVR IPI:IPI00525234
RefSeq:NP_199353.1 UniGene:At.30014 ProteinModelPortal:Q9FHJ6
SMR:Q9FHJ6 STRING:Q9FHJ6 PaxDb:Q9FHJ6 PRIDE:Q9FHJ6
EnsemblPlants:AT5G45400.1 GeneID:834576 KEGG:ath:AT5G45400
TAIR:At5g45400 InParanoid:Q9FHJ6 PhylomeDB:Q9FHJ6
ProtClustDB:CLSN2687493 Genevestigator:Q9FHJ6 Uniprot:Q9FHJ6
Length = 853
Score = 1905 (675.7 bits), Expect = 2.3e-223, Sum P(3) = 2.3e-223
Identities = 359/591 (60%), Positives = 445/591 (75%)
Query: 184 PYASN-YARTPQAPYM-QSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAK 241
P A+ Y+R Q+ Y Q P MY NRG V ++E P RI PIAALNPY G+WTIK RVT+K
Sbjct: 262 PTATTAYSRPVQSAYQPQQPPMYVNRGPVARNEAPPRINPIAALNPYQGRWTIKVRVTSK 321
Query: 242 GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPA 301
+LR +NN RG+GK+F FDLLD+DGGEIRVTCFN DQF+ ++ G +YL+SRG+LKPA
Sbjct: 322 ADLRRFNNPRGEGKLFSFDLLDADGGEIRVTCFNDAVDQFFDKIVVGNVYLISRGNLKPA 381
Query: 302 QKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVS 361
QKNFNHL ND EI LD S +Q C EDD +IPR FHFR I D+E MENNS D+IG+VS
Sbjct: 382 QKNFNHLPNDYEIHLDSASTIQPC-EDDGTIPRYHFHFRNIGDIENMENNSTTDVIGIVS 440
Query: 362 YISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILA 421
ISPT ++MRKN TE QKR+L L+DMSGRSVE+T+WGNFCN +G +LQ++CDSGVFP+LA
Sbjct: 441 SISPTVAIMRKNLTEVQKRSLQLKDMSGRSVEVTMWGNFCNAEGQKLQNLCDSGVFPVLA 500
Query: 422 VKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRA 481
+KAGR+ +FNGK V TI +Q FIEPDFPEA L++W+E+EG+N SISR+ VGR
Sbjct: 501 LKAGRIGEFNGKQVSTIGASQFFIEPDFPEARELRQWYEREGRNAHFTSISREFSGVGRQ 560
Query: 482 DIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGD 541
++RK ++QIKDE LGT EKPDWITV ATI ++K +NFCYTACPIM GDRPC+KKV NNGD
Sbjct: 561 EVRKVIAQIKDEKLGTSEKPDWITVCATISFMKVENFCYTACPIMNGDRPCSKKVTNNGD 620
Query: 542 GRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQ 601
G W C++CD+ V ECDYRYILQ Q+QDHT LTW TAFQE EEIMGMSAKDLY +KY +Q
Sbjct: 621 GTWRCEKCDKCVDECDYRYILQIQLQDHTDLTWATAFQEAGEEIMGMSAKDLYYVKYENQ 680
Query: 602 NDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
++EKF +++R+ FTKY+FKLK+KEET+SDEQRVK+TVVKAE+ NYSS TRF+L+ +DKL
Sbjct: 681 DEEKFEDIIRSVAFTKYIFKLKIKEETYSDEQRVKATVVKAEKLNYSSNTRFMLEAIDKL 740
Query: 662 KSGDSTSFALKAENIIPKPEMTYTGTGNIGSRQTAPVVANYVGNNSNAGAASGL-LANQM 720
K GD+ S +KAE+ + + +G G G+R TA V +A GL ANQ+
Sbjct: 741 KIGDANSLPIKAESSNYRSDAFNSGVGTSGTRDTASV---------DARREFGLPAANQV 791
Query: 721 GQYGNQYSGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMSGP-GQSSGG 770
GQYGNQYS G + SC+ C + H S NCP++MS P GQ GG
Sbjct: 792 GQYGNQYSSDARSLGGFT----SCNVCRSNSHVSANCPTLMSEPQGQYMGG 838
Score = 217 (81.4 bits), Expect = 2.3e-223, Sum P(3) = 2.3e-223
Identities = 73/220 (33%), Positives = 95/220 (43%)
Query: 1 MPVLQVMDLKLVVSKXXXXXXXXXXRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
MPVLQV +LKL+ SK R++ +LSDG+ GML T N LV G +Q+GSV
Sbjct: 25 MPVLQVTELKLIQSKLHQNQESSN-RYKFLLSDGTDLAAGMLNTSLNSLVNQGTIQLGSV 83
Query: 61 VRLTKFTCNVIQNRXXXXXXXXXXXXXKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATG 120
+RLT + CN+IQ R KC+ IG P S N Q G V N QSN G
Sbjct: 84 IRLTHYICNLIQTRRIVVIMQLEVIVEKCNIIGNPKEPGHSSINPQRGGV--NTQSN--G 139
Query: 121 VSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGXXXXXXXXXXXXXXXPRPE 180
S Q R S + G V A N P +P+V P+P+
Sbjct: 140 GSEQQQ--ARRSDVNGGRYGVSA------NSP----QPQVVHNSSDAGRYCVSANSPQPQ 187
Query: 181 F--SRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSR 218
S A Y + +P Q + G G+ +V R
Sbjct: 188 VVHSSSDAGRYGVSANSPQRQVVHNSPDAGRYGQPQVSQR 227
Score = 74 (31.1 bits), Expect = 2.3e-223, Sum P(3) = 2.3e-223
Identities = 19/72 (26%), Positives = 28/72 (38%)
Query: 764 PGQSSGGGYANSFSSGA-GIATSSECYKCHKTGHWARDCPSLNAAPPXXXXXXXXXXXXX 822
P + G Y N +SS A + + C C H + +CP+L + P
Sbjct: 786 PAANQVGQYGNQYSSDARSLGGFTSCNVCRSNSHVSANCPTLMSEPQGQYMGGTNAGGGM 845
Query: 823 XXXXPRQQVGGF 834
PRQ VG +
Sbjct: 846 ----PRQHVGSY 853
Score = 48 (22.0 bits), Expect = 8.6e-17, Sum P(3) = 8.6e-17
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 678 PKPEMTYTGTGNIGSRQTAPVVANYVGNNSNAGAA 712
P+ Y GTG+ G +T+P YV +N+ G +
Sbjct: 222 PQVSQRY-GTGS-GYPETSPSTRPYVSSNAGYGGS 254
>TAIR|locus:2134766 [details] [associations]
symbol:AT4G19130 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=RCA] [GO:0010332 "response to gamma radiation"
evidence=RCA] InterPro:IPR001878 InterPro:IPR004365
InterPro:IPR004591 InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057
PROSITE:PS50158 SMART:SM00343 GO:GO:0005634 EMBL:CP002687
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR013955 Pfam:PF08646
KO:K07466 TIGRFAMs:TIGR00617 OMA:QNKWVIK IPI:IPI00546271
RefSeq:NP_567576.2 UniGene:At.26624 UniGene:At.73929
ProteinModelPortal:F4JSG3 SMR:F4JSG3 PRIDE:F4JSG3
EnsemblPlants:AT4G19130.1 GeneID:827651 KEGG:ath:AT4G19130
Uniprot:F4JSG3
Length = 784
Score = 2007 (711.6 bits), Expect = 4.5e-211, Sum P(2) = 4.5e-211
Identities = 414/788 (52%), Positives = 524/788 (66%)
Query: 1 MPVLQVMDLKLVVSKXXXXXXXXXXRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
+PVLQV DLK ++++ RFRMVLSDG+ QGML T N LV G LQ GS+
Sbjct: 25 IPVLQVTDLKQIMAQQDPTRE----RFRMVLSDGTYLHQGMLGTDLNNLVKEGTLQPGSI 80
Query: 61 VRLTKFTCNVIQNRXXXXXXXXXXXXXKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT- 119
VRLT+F +VI+ R D IG PVP + N+Q G+ +G + N T
Sbjct: 81 VRLTRFVGDVIKGRRIVIVPQLEVLKQISDIIGHPVPGGK--HNDQRGADSGI-KFNTTE 137
Query: 120 --GVSLQHHNNTRVSQLPGDTDAV--PAARHVGSNLPPNYFKPEVGXXXXXXXXXXXXXX 175
G ++ NN PG ++A P GS++P + P
Sbjct: 138 QQGSGIRQVNNIE----PGRSNAAISPQVGGTGSSVPAST-TPSTRAYSNPSSGNGVT-- 190
Query: 176 XPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIK 235
R +++R ++Y PQ P P MYANRG V ++E P +IIP+ AL+PY G+WTIK
Sbjct: 191 --RQDYARDPPTSYPHQPQPP----PPMYANRGPVARNEAPPKIIPVNALSPYSGRWTIK 244
Query: 236 ARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSR 295
ARVT K L+ Y+N RG+GKVF+FDLLD+DGGEIRVTCFNAVADQFY Q+ G +YL+SR
Sbjct: 245 ARVTNKAALKQYSNPRGEGKVFNFDLLDADGGEIRVTCFNAVADQFYDQIVVGNLYLISR 304
Query: 296 GSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVD 355
GSL+PAQKNFNHL ND EI LD S ++ CYE+DA+IPR QFHFR I D+E MENN +VD
Sbjct: 305 GSLRPAQKNFNHLRNDYEIMLDNASTIKQCYEEDAAIPRHQFHFRTIGDIESMENNCIVD 364
Query: 356 LIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSG 415
+IG+VS ISPT ++ RKNGT T KR+L L+DMSGRSVE+T+WG+FCN +G RLQ +CDSG
Sbjct: 365 VIGIVSSISPTVTITRKNGTATPKRSLQLKDMSGRSVEVTMWGDFCNAEGQRLQSLCDSG 424
Query: 416 VFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDS 475
VFP+LAVKAGR+S+FNGK V TI ++QLFI+PDF EA +LK WFE+EGK+ +S+SR+
Sbjct: 425 VFPVLAVKAGRISEFNGKTVSTIGSSQLFIDPDFVEAEKLKNWFEREGKSVPCISLSREF 484
Query: 476 LSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKK 535
G+ D+RKT+SQIKDE LGT EKPDWITVSATI+Y+K DNFCYTACPIM GDRPC+KK
Sbjct: 485 SGSGKVDVRKTISQIKDEKLGTSEKPDWITVSATILYLKFDNFCYTACPIMNGDRPCSKK 544
Query: 536 VMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYS 595
V +NGDG W C++CD+SV ECDYRYILQ QIQDHT LT VTAFQE EEIMG+SAKDLY
Sbjct: 545 VTDNGDGTWRCEKCDKSVDECDYRYILQLQIQDHTDLTCVTAFQEAGEEIMGISAKDLYY 604
Query: 596 LKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
+K +++EKF +++R FTKY FKLKVKEETFSDEQRVK+TVVK ++ NYS++TR +L
Sbjct: 605 VKNEHKDEEKFEDIIRKVAFTKYNFKLKVKEETFSDEQRVKATVVKVDKLNYSADTRTML 664
Query: 656 DLMDKLKSGDSTSFALKAENIIPKPEMTYTGTGNIGSRQTAPVVANYVGNNSNAGAASGL 715
MDKL++ D+ S + E ++ TG G+ G+R + V G L
Sbjct: 665 GAMDKLRTRDANSLPINPEGSDYNADVVNTGIGSSGTRDPSSVQRRDFG----------L 714
Query: 716 LANQMGQYGNQYSGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANS 775
A+Q GQ GN YSG G + + C + G V GQ GG Y +
Sbjct: 715 HAHQSGQSGNHYSGG-----GATTSCNVCGNSGHVSAKCPGATKPQE-QGQYMGGSYRGT 768
Query: 776 FSS-GAGI 782
S G G+
Sbjct: 769 TGSYGGGL 776
Score = 56 (24.8 bits), Expect = 4.5e-211, Sum P(2) = 4.5e-211
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 771 GYANSFSSGAGIATSSECYKCHKTGHWARDCP 802
G + + SG G TS C C +GH + CP
Sbjct: 720 GQSGNHYSGGGATTS--CNVCGNSGHVSAKCP 749
>TAIR|locus:2054577 [details] [associations]
symbol:RPA1A "replication protein A 1A" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IEA] [GO:0006260 "DNA replication"
evidence=IEA;ISS] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IGI;RCA]
[GO:0007141 "male meiosis I" evidence=IMP] [GO:0009555 "pollen
development" evidence=IMP] [GO:0048232 "male gamete generation"
evidence=IMP] [GO:0051026 "chiasma assembly" evidence=IMP]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=RCA] [GO:0006312 "mitotic recombination"
evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0007062 "sister chromatid
cohesion" evidence=RCA] [GO:0007129 "synapsis" evidence=RCA]
[GO:0007140 "male meiosis" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009560
"embryo sac egg cell differentiation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=RCA] [GO:0009845 "seed
germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0010332 "response to
gamma radiation" evidence=RCA] [GO:0016444 "somatic cell DNA
recombination" evidence=RCA] [GO:0016567 "protein ubiquitination"
evidence=RCA] [GO:0019915 "lipid storage" evidence=RCA] [GO:0032204
"regulation of telomere maintenance" evidence=RCA] [GO:0032504
"multicellular organism reproduction" evidence=RCA] [GO:0042138
"meiotic DNA double-strand break formation" evidence=RCA]
[GO:0043247 "telomere maintenance in response to DNA damage"
evidence=RCA] [GO:0043687 "post-translational protein modification"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0050826 "response to freezing"
evidence=RCA] InterPro:IPR004365 InterPro:IPR004591
InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0009555 GO:GO:0003677 GO:GO:0006260
GO:GO:0000790 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0007131 GO:GO:0007141 GO:GO:0051026 GO:GO:0048232
InterPro:IPR013955 Pfam:PF08646 eggNOG:COG1599 KO:K07466
TIGRFAMs:TIGR00617 HOGENOM:HOG000162322 OMA:ICQVNRF EMBL:AC006420
HSSP:P27694 UniGene:At.22213 UniGene:At.71077 EMBL:BT005946
EMBL:AK118699 IPI:IPI00523631 PIR:B84478 RefSeq:NP_178690.1
ProteinModelPortal:Q9SKI4 SMR:Q9SKI4 IntAct:Q9SKI4 STRING:Q9SKI4
PaxDb:Q9SKI4 PRIDE:Q9SKI4 EnsemblPlants:AT2G06510.1 GeneID:815209
KEGG:ath:AT2G06510 TAIR:At2g06510 InParanoid:Q9SKI4
PhylomeDB:Q9SKI4 ProtClustDB:CLSN2683265 ArrayExpress:Q9SKI4
Genevestigator:Q9SKI4 Uniprot:Q9SKI4
Length = 640
Score = 1647 (584.8 bits), Expect = 4.9e-181, Sum P(2) = 4.9e-181
Identities = 294/465 (63%), Positives = 376/465 (80%)
Query: 196 PYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGK 255
P Q P+ Y N G + K+E P+R+IPIAALNPY G+W IKARVTAKG++R YNN +GDGK
Sbjct: 174 PSYQPPASYRNHGPIMKNEAPARVIPIAALNPYQGRWAIKARVTAKGDIRRYNNAKGDGK 233
Query: 256 VFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIF 315
VF FDLLD DGGEIRVTCFNA+ D+FY E GK+YL+S+GSLKPAQKNFNHL N+ EIF
Sbjct: 234 VFSFDLLDYDGGEIRVTCFNALVDRFYDVTEVGKVYLISKGSLKPAQKNFNHLKNEWEIF 293
Query: 316 LDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGT 375
L+ TS V+LC ++D SIP+QQF FRPI+D+E ENN+++D+IGVV+ ++P+ ++RKNG
Sbjct: 294 LESTSTVELCPDEDGSIPKQQFSFRPISDIENAENNTILDVIGVVTSVNPSVPILRKNGM 353
Query: 376 ETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVV 435
ET +R L+L+D SG++VE+TLWG FCN DG +L+ M DS P+LA+KAG+VSDF+GK V
Sbjct: 354 ETHRRILNLKDESGKAVEVTLWGEFCNRDGRQLEEMVDSAFHPVLAIKAGKVSDFSGKSV 413
Query: 436 GTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSL--SVGRADIRKTVSQIKDE 493
GTIS+TQLFI PDFPEAH+L+ WF+ GK+T S SISRD++ V R +IRK VSQIK+E
Sbjct: 414 GTISSTQLFINPDFPEAHKLRTWFDYGGKDTASFSISRDTMPGGVSRNEIRKNVSQIKEE 473
Query: 494 GLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSV 553
GLG +KPDWITV ATI +IK D+FCYTACP+MIGD+ CNKKV +G RW CDRC+Q
Sbjct: 474 GLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDKQCNKKVTRSGTNRWLCDRCNQES 533
Query: 554 VECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNA 613
ECDYRY+LQ QIQDHTGLTW+TAFQE EEIMG AK LY++KY + +E+F E+VR+
Sbjct: 534 DECDYRYLLQVQIQDHTGLTWITAFQETGEEIMGCPAKKLYAMKYELEKEEEFAEIVRDR 593
Query: 614 TFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLM 658
F +Y+ KLK+KEE++ DEQRVK TVVK ++ NY+SE++++LDL+
Sbjct: 594 LFHQYMLKLKIKEESYGDEQRVKMTVVKVDKVNYTSESKYMLDLL 638
Score = 132 (51.5 bits), Expect = 4.9e-181, Sum P(2) = 4.9e-181
Identities = 42/165 (25%), Positives = 76/165 (46%)
Query: 2 PVLQVMDLKLVVSKXXXXXXXXXXRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P+LQV+++K++ R+R ++SDG +Q M+A Q N+ V SG + GS+V
Sbjct: 22 PLLQVLEIKMI----GRSQERSQERYRFLISDGVSAQHAMVAVQLNDRVKSGQFEKGSIV 77
Query: 62 RLTKFTCNVIQNRXXXXXXXXXXXXXKCDPIGKP-VPAQRPSSNEQPGSVTGN-PQSNAT 119
+L + C+ ++ R + + IG P + + + ++ S TGN P N
Sbjct: 78 QLIDYICSDVKGRKLIVVLNMETIVQQSETIGNPTIFGETDTEAQKTFSGTGNIPPPNRV 137
Query: 120 GVS---LQHHNNT---RVSQLPGDTDAVPAARHVGSNLPPNYFKP 158
+ +QH N R + + P+ R ++ P+Y P
Sbjct: 138 VFNEPMVQHSVNRAPPRGVNIQNQANNTPSFR---PSVQPSYQPP 179
>UNIPROTKB|Q65XV7 [details] [associations]
symbol:P0016H04.11 "Os05g0111000 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001878 InterPro:IPR004365
InterPro:IPR004591 InterPro:IPR007199 Pfam:PF00098 Pfam:PF01336
Pfam:PF04057 PROSITE:PS50158 SMART:SM00343 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0008270
EMBL:AP008211 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:CM000142 InterPro:IPR013955
Pfam:PF08646 eggNOG:COG1599 KO:K07466 TIGRFAMs:TIGR00617
HOGENOM:HOG000162322 EMBL:AC079356 RefSeq:NP_001054445.1
UniGene:Os.53618 IntAct:Q65XV7 EnsemblPlants:LOC_Os05g02040.1
GeneID:4337594 KEGG:osa:4337594 OMA:RWTIKVR ProtClustDB:CLSN2695308
Uniprot:Q65XV7
Length = 951
Score = 1525 (541.9 bits), Expect = 4.1e-173, Sum P(2) = 4.1e-173
Identities = 305/626 (48%), Positives = 413/626 (65%)
Query: 184 PYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGE 243
P + Y + + Y Q P +Y NRG +++ +RIIPI ALNPY KWTIKARVTAK +
Sbjct: 272 PPGNAYGQPSRPSYQQPPPVYMNRGPASRNDSATRIIPITALNPYQPKWTIKARVTAKSD 331
Query: 244 LRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQK 303
+RH++N R G VF FDLLD+ GGEIR C+ AD+F+ Q+E G++YL+SRGSLKPAQK
Sbjct: 332 IRHWSNARSSGTVFSFDLLDAQGGEIRAQCWKESADKFFGQIEVGRVYLISRGSLKPAQK 391
Query: 304 NFNHLHNDLEIFLDM-TSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSY 362
+N L++D EI LD+ S V++C +DD SIPR Q++FR I+++E M N ++VDL+GVV+
Sbjct: 392 KYNTLNHDYEITLDIGLSTVEVCSDDDNSIPRLQYNFRQISELENMANETIVDLLGVVTS 451
Query: 363 ISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAV 422
+SP+A++MRK GTET+KR++ L+D+SGRS+E+TLWGNFC+ +G +LQ CDSG PI+A
Sbjct: 452 VSPSATIMRKIGTETRKRSIQLKDLSGRSIEVTLWGNFCDAEGQQLQLQCDSGSNPIIAF 511
Query: 423 KAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRAD 482
K RV DFNGK V TI +TQL I PDFPE RL++W+ EGK +S+SR+ L++GR D
Sbjct: 512 KGARVGDFNGKSVSTIGSTQLIINPDFPEVERLRQWYMTEGKTAPCISLSREMLNMGRTD 571
Query: 483 IRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIG-DRPCNKKVMNNGD 541
RKT++QIKDE LG EKPDWITV A I ++ ++FCY ACP ++ R CNKK +NNGD
Sbjct: 572 ARKTIAQIKDENLGRLEKPDWITVKAAISHVTTESFCYPACPKLLPVGRQCNKKAINNGD 631
Query: 542 GRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQ 601
G WHCDRCD+S +YRY+L+FQIQDHTG T+ +AF E E+I G A +L+S++ VDQ
Sbjct: 632 GMWHCDRCDESFQNPEYRYMLRFQIQDHTGSTYASAFDEAGEQIFGRKAGELFSIRNVDQ 691
Query: 602 NDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
+D +F E++ + YLFKLKVKEET++DEQ +K T VK E+ + S E+ +L +D L
Sbjct: 692 DDAQFAEIIEGVRWHLYLFKLKVKEETYNDEQSLKCTAVKVEKLDPSKESNVLLGAIDNL 751
Query: 662 KSGDSTSFALKAENIIPKPEMTYTGTGNIGSRQTAPVVANYVGNNSNAGAASGLLANQMG 721
+ PK + N G T PV + +SNA A + NQ G
Sbjct: 752 L-------------LDPKGQSDLAP--NAGF--TDPVGGHGAPTSSNAYAMNTGGVNQFG 794
Query: 722 QYGNQYSGSRLPAAGTSAARQS--CSSCG---AVGHSSMNCPSIMSGPGQSSGGGYANSF 776
Q + +G P A T + C + G + H + + G SS G Y NS
Sbjct: 795 QQASISAGMSTPLAATRNLQTCSICGANGHSAQICHVGADMDMQETSAGGSSMGNY-NSI 853
Query: 777 SSGAGIATSSECYKCHKTGHWARDCP 802
+ G G SSECYKC + GH+ARDCP
Sbjct: 854 A-GNG---SSECYKCKQPGHYARDCP 875
Score = 179 (68.1 bits), Expect = 4.1e-173, Sum P(2) = 4.1e-173
Identities = 53/151 (35%), Positives = 70/151 (46%)
Query: 2 PVLQVMDLKLVVSKXXXXXXXXXXRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQV+D++ V +K RFRM+LSDG +QQ MLAT N LV L+ G+VV
Sbjct: 25 PVLQVVDVRPVTTKNAPPTPKPAERFRMMLSDGVNTQQSMLATALNPLVKDATLRPGTVV 84
Query: 62 RLTKFTCNVIQNRXXXXXXXXXXXXXKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGV 121
+LT F CN IQ + C IG P + +P S+T N
Sbjct: 85 QLTDFMCNTIQGKRIIIVVKLDVLQNDCIVIGNP-------KHYEPKSLTKEQDPNLQAS 137
Query: 122 SLQHHNNTRV--SQLPGDTDAVPAARHVGSN 150
Q +N T + + G + A P A SN
Sbjct: 138 VAQTNNGTYSGGASMLGPSVA-PRAEQAASN 167
Score = 109 (43.4 bits), Expect = 7.6e-16, Sum P(2) = 7.6e-16
Identities = 25/81 (30%), Positives = 38/81 (46%)
Query: 724 GNQYSGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIA 783
G G+ AG ++ C C GH + +CP +G + FS +
Sbjct: 843 GGSSMGNYNSIAGNGSSE--CYKCKQPGHYARDCPGQSTGGLECFKCKQPGHFSRDCPVQ 900
Query: 784 TS--SECYKCHKTGHWARDCP 802
++ SEC+KC + GH+ARDCP
Sbjct: 901 STGGSECFKCKQPGHFARDCP 921
Score = 50 (22.7 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 738 SAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAG 781
S C C GH + +CP +G + Y N+ ++ G
Sbjct: 901 STGGSECFKCKQPGHFARDCPGQSTGAQHQT---YGNNVAASRG 941
>UNIPROTKB|Q9AVL8 [details] [associations]
symbol:OsRPA70a "Replication protein A 70kDa" species:39947
"Oryza sativa Japonica Group" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004365 InterPro:IPR004591
InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057 GO:GO:0009555
GO:GO:0003677 GO:GO:0006260 GO:GO:0000790 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0007131 GO:GO:0007141
GO:GO:0051026 GO:GO:0048232 InterPro:IPR013955 Pfam:PF08646
TIGRFAMs:TIGR00617 HSSP:P27694 EMBL:AB042415
ProteinModelPortal:Q9AVL8 IntAct:Q9AVL8 STRING:Q9AVL8
KEGG:dosa:Os02t0776800-01 Gramene:Q9AVL8 Uniprot:Q9AVL8
Length = 654
Score = 1537 (546.1 bits), Expect = 1.1e-168, Sum P(2) = 1.1e-168
Identities = 293/554 (52%), Positives = 395/554 (71%)
Query: 110 VTGNPQS-NATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGX-XXXXX 167
+ GNP + + TG + N TRV Q G P + N KP
Sbjct: 108 IIGNPTALSETGSPIP--NPTRVEQFNG----APQYGLMAGNSSNTTTKPSDNVPLFQNS 161
Query: 168 XXXXXXXXXPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNP 227
RP P + T Q Y +P+ Y N G + K+E P+RIIPI+ALNP
Sbjct: 162 MAGNSSNFATRPSDKVPV---FQPTVQPSYRPAPN-YKNHGAIMKNEAPARIIPISALNP 217
Query: 228 YMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEA 287
Y G+W IKARVTAKG++R Y+N +GDGKVF FDLLDSDGGEIRVTCFNA+ D+FY VE
Sbjct: 218 YQGRWAIKARVTAKGDIRRYHNAKGDGKVFSFDLLDSDGGEIRVTCFNALLDRFYEVVEV 277
Query: 288 GKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEG 347
GK+Y+VSRG+L+PAQKN+NHL+N+ EI L+ S V LC ++++SIP Q+F FRPIN++E
Sbjct: 278 GKVYVVSRGNLRPAQKNYNHLNNEWEILLENGSTVDLCPDENSSIPTQRFDFRPINEIED 337
Query: 348 MENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLR 407
+NN+++D+IGVV+ ++P ++ RKNG ETQKRT++L+DMSGRSVE+T+WG+FCN +G +
Sbjct: 338 AQNNAILDIIGVVTSVNPCTTIQRKNGMETQKRTMNLKDMSGRSVEVTMWGDFCNREGSQ 397
Query: 408 LQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQ 467
LQ M + G+FP+LAVKAG+VSDF+GK VGTIS+TQ FI PD EAH L++WF+ G++
Sbjct: 398 LQGMVERGIFPVLAVKAGKVSDFSGKSVGTISSTQFFINPDSAEAHSLRQWFDSGGRDAF 457
Query: 468 SVSISRD-SLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIM 526
+ SISRD + R +IRKTV+QIKDEGLG +KPDWITV AT+++ K ++F YTACP M
Sbjct: 458 TQSISRDITPGASRNEIRKTVAQIKDEGLGMGDKPDWITVKATVIFFKNESFFYTACPNM 517
Query: 527 IGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM 586
IGDR CNKKV + +G W CD+CD+ ECDYRY+LQFQIQDH+G WVTAFQE +E++
Sbjct: 518 IGDRQCNKKVTKSTNGNWTCDKCDREFEECDYRYLLQFQIQDHSGTAWVTAFQEAGQELL 577
Query: 587 GMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYN 646
G SA +L +LK ++ D +F + + N F +YL +LKVKEE++ DE++VK+T VK E+ +
Sbjct: 578 GCSATELNALK--EREDPRFADTMLNCLFQEYLLRLKVKEESYGDERKVKNTAVKVEKVD 635
Query: 647 YSSETRFILDLMDK 660
S E++F+LDL+ K
Sbjct: 636 PSGESKFLLDLISK 649
Score = 125 (49.1 bits), Expect = 1.1e-168, Sum P(2) = 1.1e-168
Identities = 35/136 (25%), Positives = 61/136 (44%)
Query: 2 PVLQVMDLKLVVSKXXXXXXXXXXRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQ+++L+ V + RFR V+SDG+ + + A Q ++ SG L+ GS+V
Sbjct: 21 PVLQIVELRGV--QVNGAGVTRGERFRAVVSDGTAASSALFAAQLSDHARSGALRRGSIV 78
Query: 62 RLTKFTCNVIQNRXXXXXXXXXXXXXKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGV 121
+L+++ N + R +C+ IG P A + + P + A
Sbjct: 79 QLSEYVINEVGPRRIIVILNLEVLVSECEIIGNPT-ALSETGSPIPNPTRVEQFNGAPQY 137
Query: 122 SLQHHNNTRVSQLPGD 137
L N++ + P D
Sbjct: 138 GLMAGNSSNTTTKPSD 153
>UNIPROTKB|P27694 [details] [associations]
symbol:RPA1 "Replication protein A 70 kDa DNA-binding
subunit" species:9606 "Homo sapiens" [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0030097 "hemopoiesis" evidence=IEA] [GO:0048873 "homeostasis of
number of cells within a tissue" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006261 "DNA-dependent DNA replication"
evidence=TAS] [GO:0006310 "DNA recombination" evidence=TAS]
[GO:0005662 "DNA replication factor A complex" evidence=IPI]
[GO:0016605 "PML body" evidence=IDA] [GO:0000075 "cell cycle
checkpoint" evidence=TAS] [GO:0000082 "G1/S transition of mitotic
cell cycle" evidence=TAS] [GO:0000084 "S phase of mitotic cell
cycle" evidence=TAS] [GO:0000216 "M/G1 transition of mitotic cell
cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000718 "nucleotide-excision repair, DNA damage removal"
evidence=TAS] [GO:0000722 "telomere maintenance via recombination"
evidence=TAS] [GO:0000723 "telomere maintenance" evidence=TAS]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=TAS] [GO:0000730 "DNA recombinase assembly"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006260
"DNA replication" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0006302 "double-strand break repair" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0015629 "actin cytoskeleton" evidence=IDA] Reactome:REACT_216
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 GO:GO:0007126 GO:GO:0005737 EMBL:CH471108
Reactome:REACT_115566 Reactome:REACT_21300 GO:GO:0046872
GO:GO:0015629 GO:GO:0000082 GO:GO:0016605 GO:GO:0008284
GO:GO:0001701 GO:GO:0003682 Reactome:REACT_111183 GO:GO:0001673
GO:GO:0003697 GO:GO:0048873 GO:GO:0030097 GO:GO:0000794
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000216
GO:GO:0000084 GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383
GO:GO:0000718 GO:GO:0006283 GO:GO:0006271 GO:GO:0032201
GO:GO:0006297 GO:GO:0005662 InterPro:IPR013955 Pfam:PF08646
PDB:2B3G PDBsum:2B3G GO:GO:0000730 eggNOG:COG1599 KO:K07466
TIGRFAMs:TIGR00617 CTD:6117 HOGENOM:HOG000162322 HOVERGEN:HBG010502
OrthoDB:EOG4V9TQ8 OMA:QNKWVIK EMBL:M63488 EMBL:AK289704
EMBL:AB209732 EMBL:AY599563 EMBL:BC018126 IPI:IPI00020127
PIR:A40457 RefSeq:NP_002936.1 UniGene:Hs.461925 PDB:1EWI PDB:1FGU
PDB:1JMC PDB:1L1O PDB:2B29 PDBsum:1EWI PDBsum:1FGU PDBsum:1JMC
PDBsum:1L1O PDBsum:2B29 DisProt:DP00061 ProteinModelPortal:P27694
SMR:P27694 DIP:DIP-24189N IntAct:P27694 MINT:MINT-91488
STRING:P27694 PhosphoSite:P27694 DMDM:1350579 PaxDb:P27694
PeptideAtlas:P27694 PRIDE:P27694 DNASU:6117 Ensembl:ENST00000254719
GeneID:6117 KEGG:hsa:6117 UCSC:uc002fto.2 GeneCards:GC17P001680
HGNC:HGNC:10289 HPA:CAB004563 HPA:HPA006914 MIM:179835
neXtProt:NX_P27694 PharmGKB:PA34651 InParanoid:P27694
PhylomeDB:P27694 BindingDB:P27694 ChEMBL:CHEMBL1764940 ChiTaRS:RPA1
EvolutionaryTrace:P27694 GenomeRNAi:6117 NextBio:23755 Bgee:P27694
CleanEx:HS_RPA1 Genevestigator:P27694 GermOnline:ENSG00000132383
Uniprot:P27694
Length = 616
Score = 858 (307.1 bits), Expect = 8.9e-95, Sum P(3) = 8.9e-95
Identities = 179/435 (41%), Positives = 264/435 (60%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
S+++PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D + GEIR T FN
Sbjct: 182 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNE 240
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
D+F+ +E K+Y S+G+LK A K F + ND E+ + + V C EDD +P Q
Sbjct: 241 QVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC-EDDHHLPTVQ 299
Query: 337 FHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F I+D+E +S+VD+IG+ SY T +R N E KR ++L D SG+ V T
Sbjct: 300 FDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTAT 359
Query: 396 LWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
LWG + DG R P+LA+K RVSDF G+ + +S++ + PD PEA++
Sbjct: 360 LWGEDADKFDGSRQ---------PVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYK 410
Query: 455 LKEWFEKEGKNTQSVSISR-DSLSVGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVY 512
L+ WF+ EG+ VSIS S VG ++ KT+ ++K E LG +KPD+ + AT+VY
Sbjct: 411 LRGWFDAEGQALDGVSISDLKSGGVGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVY 470
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
++ +N Y ACP + CNKKV++ +G + C++CD YR IL I D
Sbjct: 471 LRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQEN 526
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
WVT FQE AE I+G +A L LK D+N++ F EV +NA F ++F+++VK ET++DE
Sbjct: 527 QWVTCFQESAEAILGQNAAYLGELK--DKNEQAFEEVFQNANFRSFIFRVRVKVETYNDE 584
Query: 633 QRVKSTVVKAERYNY 647
R+K+TV+ + +Y
Sbjct: 585 SRIKATVMDVKPVDY 599
Score = 77 (32.2 bits), Expect = 8.9e-95, Sum P(3) = 8.9e-95
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 2 PVLQVMDLKLVVSKXXXXXXXXXXRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQV++++ + + R+R+++SDG + MLATQ N LV L V
Sbjct: 23 PILQVINIRPITT------GNSPPRYRLLMSDGLNTLSSFMLATQLNPLVEEEQLSSNCV 76
Query: 61 VRLTKFTCNVIQN 73
++ +F N +++
Sbjct: 77 CQIHRFIVNTLKD 89
Score = 41 (19.5 bits), Expect = 8.9e-95, Sum P(3) = 8.9e-95
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 92 IGKPVPAQRPSSNEQPGSVTGNPQSNATGV 121
+ P PA P+++ +P PQ+ ++G+
Sbjct: 127 VAPPAPAASPAASSRP-----QPQNGSSGM 151
>UNIPROTKB|Q0VCV0 [details] [associations]
symbol:RPA1 "Replication protein A1, 70kDa" species:9913
"Bos taurus" [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0048873 "homeostasis of number of cells within a tissue"
evidence=IEA] [GO:0030097 "hemopoiesis" evidence=IEA] [GO:0016605
"PML body" evidence=IEA] [GO:0015629 "actin cytoskeleton"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0001673 "male germ cell nucleus" evidence=IEA]
[GO:0000800 "lateral element" evidence=IEA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR004365
InterPro:IPR004591 InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057
GO:GO:0007126 GO:GO:0005737 GO:GO:0003677 GO:GO:0015629
GO:GO:0016605 GO:GO:0008284 GO:GO:0006260 GO:GO:0001701
GO:GO:0003682 GO:GO:0001673 GO:GO:0048873 GO:GO:0000724
GO:GO:0030097 GO:GO:0000794 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0051276 GO:GO:0005662 InterPro:IPR013955
Pfam:PF08646 eggNOG:COG1599 GeneTree:ENSGT00390000012403 KO:K07466
TIGRFAMs:TIGR00617 CTD:6117 HOGENOM:HOG000162322 HOVERGEN:HBG010502
OrthoDB:EOG4V9TQ8 OMA:QNKWVIK EMBL:DAAA02048667 EMBL:DAAA02048664
EMBL:DAAA02048665 EMBL:DAAA02048666 EMBL:BC119986 IPI:IPI00700452
RefSeq:NP_001068644.1 UniGene:Bt.19931 SMR:Q0VCV0 STRING:Q0VCV0
Ensembl:ENSBTAT00000012812 GeneID:504844 KEGG:bta:504844
InParanoid:Q0VCV0 NextBio:20866858 Uniprot:Q0VCV0
Length = 616
Score = 851 (304.6 bits), Expect = 1.9e-91, Sum P(2) = 1.9e-91
Identities = 186/482 (38%), Positives = 279/482 (57%)
Query: 179 PEFSRPYASN----YARTPQAPYMQSPSMYANRGLVGKSEVPS------RIIPIAALNPY 228
P SRP N A T + S + + G G S+V S +++PIA+L PY
Sbjct: 137 PPTSRPQQQNGSPGMASTASKAFGASKT-FGKAG--GTSQVNSSGGTQAKVVPIASLTPY 193
Query: 229 MGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAG 288
KWTI ARVT K ++R ++N RG+GK+F +L+D + GEIR T FN AD+F+ ++
Sbjct: 194 QSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNEQADKFFPLIDVN 252
Query: 289 KIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGM 348
K+Y S+G+LK A K F + ND E+ + + V C ED +P QF F I D+E
Sbjct: 253 KVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC-EDGHHLPTVQFDFTGIGDLESK 311
Query: 349 ENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLR 407
+S+VD+IG+ +Y T +++ N E KR ++L DMSG+ V TLWG DD +
Sbjct: 312 SKDSLVDIIGICKNYEDVTKIIVKSNNREVSKRNIYLMDMSGKVVNATLWG----DDADK 367
Query: 408 LQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQ 467
D P++A+K RVSDF G+ + +S++ + + PD PEA++L+ WF+ EG+
Sbjct: 368 F----DGSRQPVMAIKGARVSDFGGRSLSVLSSSTIIVNPDIPEAYKLRGWFDSEGQALD 423
Query: 468 SVSISR-DSLSVGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPI 525
+SIS S G ++ KT+ ++K E LG +KPD+ + AT+VY++ +N Y ACP
Sbjct: 424 GISISDLKSGGAGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPT 483
Query: 526 MIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEI 585
+ CNKKV++ +G + C++CD YR IL I D WVT FQE AE I
Sbjct: 484 ----QDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEAI 539
Query: 586 MGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERY 645
+G S L LK ++N++ F EV +NA F + F+++VK ET++DE R+K+TVV +
Sbjct: 540 LGQSTAYLGELK--EKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVVDVKPV 597
Query: 646 NY 647
+Y
Sbjct: 598 DY 599
Score = 80 (33.2 bits), Expect = 1.9e-91, Sum P(2) = 1.9e-91
Identities = 28/111 (25%), Positives = 49/111 (44%)
Query: 2 PVLQVMDLKLVVSKXXXXXXXXXXRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQV++++ + + R+R+++SDG + MLATQ N LV L +
Sbjct: 23 PILQVINIRPITT------GNSPPRYRLLMSDGLNTLSSFMLATQLNPLVEEERLSSNCI 76
Query: 61 VRLTKFTCNVIQN--RXXXXXXXXXXXXXKC--DPIGKPVPAQRPSSNEQP 107
++ +F N +++ R + IG PVP +QP
Sbjct: 77 CQINRFIVNTLKDGRRVVILMELEVLKSAEAVGSKIGNPVPYNE-GHGQQP 126
>UNIPROTKB|Q5ZJJ2 [details] [associations]
symbol:RPA1 "Replication protein A 70 kDa DNA-binding
subunit" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0000800 "lateral
element" evidence=IEA] [GO:0001673 "male germ cell nucleus"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0007126 "meiosis"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0015629 "actin cytoskeleton"
evidence=IEA] [GO:0016605 "PML body" evidence=IEA] [GO:0030097
"hemopoiesis" evidence=IEA] [GO:0048873 "homeostasis of number of
cells within a tissue" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006302 "double-strand break repair" evidence=TAS]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 GO:GO:0007126 GO:GO:0005737 GO:GO:0005654
GO:GO:0046872 GO:GO:0003677 GO:GO:0015629 GO:GO:0016605
GO:GO:0008284 GO:GO:0006260 GO:GO:0003682 GO:GO:0001673
GO:GO:0000724 GO:GO:0000794 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0051276 Reactome:REACT_115612 GO:GO:0005662
InterPro:IPR013955 Pfam:PF08646 eggNOG:COG1599
GeneTree:ENSGT00390000012403 KO:K07466 TIGRFAMs:TIGR00617
EMBL:AJ720442 IPI:IPI00571088 RefSeq:NP_001006221.1
UniGene:Gga.4736 ProteinModelPortal:Q5ZJJ2 SMR:Q5ZJJ2 STRING:Q5ZJJ2
PRIDE:Q5ZJJ2 Ensembl:ENSGALT00000004849 GeneID:417563
KEGG:gga:417563 CTD:6117 HOGENOM:HOG000162322 HOVERGEN:HBG010502
InParanoid:Q5ZJJ2 OMA:ICQVNRF OrthoDB:EOG4V9TQ8 NextBio:20820847
Uniprot:Q5ZJJ2
Length = 614
Score = 839 (300.4 bits), Expect = 1.3e-90, Sum P(2) = 1.3e-90
Identities = 187/472 (39%), Positives = 279/472 (59%)
Query: 195 APYMQSPSMYANRGLVGKS-EVP----SRIIPIAALNPYMGKWTIKARVTAKGELRHYNN 249
AP +PS ++ S + P S+++PIA+LNPY KWTI ARVT KG++R ++N
Sbjct: 152 APKYHAPSNQFSKASAPSSVKTPGGTQSKVVPIASLNPYQSKWTICARVTQKGQIRTWSN 211
Query: 250 QRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLH 309
RG+GK+F +L+D + GEIR T FN AD+F+ +E K+Y ++G+LK A K + +
Sbjct: 212 SRGEGKLFSIELVD-ESGEIRATAFNDQADKFFPLIELNKVYYFTKGNLKTANKQYTAVK 270
Query: 310 NDLEI-FLDMTSMVQLCYEDDAS-IPRQQFHFRPINDVEGMENNSVVDLIGVV-SYISPT 366
ND EI F + TS+V C DDA +P QF F I+D+E +S+VD+IG+ SY T
Sbjct: 271 NDYEITFNNETSVVP-C--DDAQHLPSVQFDFVSISDLENTPKDSIVDVIGICKSYEDVT 327
Query: 367 ASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCND-DGLRLQHMCDSGVFPILAVKAG 425
+++ + E KR +HL D SG+ V TLWGN DG R P++A+K
Sbjct: 328 KIVVKASNREVSKRNVHLMDTSGKLVTATLWGNEAEKFDGSRQ---------PVIAIKGA 378
Query: 426 RVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSIS--RDSLSVGRADI 483
RVSDF G+ + +S++ + + PD PEA +L+ WF+ EG+ + SIS R + G
Sbjct: 379 RVSDFGGRSLSVLSSSTVVVNPDSPEAFKLRGWFDSEGQLLECASISDVRGGSASGVNTN 438
Query: 484 RKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGR 543
KT+ + K E LG +K D+ + TIV+++ +N Y ACP + CNKKV++ +G
Sbjct: 439 WKTLYEAKSERLGQGDKADYFSCVGTIVHLRKENCMYQACP----SQDCNKKVIDQQNGL 494
Query: 544 WHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQND 603
+ C++CD+ YR +L I D WVT FQE AE I+G SA L LK D+N+
Sbjct: 495 YRCEKCDREFPNFKYRMMLLVTIADSLDYQWVTCFQESAEFILGQSATFLGELK--DKNE 552
Query: 604 EKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
+ F EV +NA F Y FK++VK ET++DE R+K+T + + NY ++ ++
Sbjct: 553 QAFEEVFQNANFNTYEFKIRVKLETYNDESRIKATALDVKPVNYREYSKRLI 604
Score = 84 (34.6 bits), Expect = 1.3e-90, Sum P(2) = 1.3e-90
Identities = 29/121 (23%), Positives = 50/121 (41%)
Query: 2 PVLQVMDLKLVVSKXXXXXXXXXXRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
PVLQV++ + + + R+R+++SDG + MLATQ N LV L +
Sbjct: 22 PVLQVINTRAIAT------GNGPPRYRVLMSDGVNTLSSFMLATQLNPLVEEERLSAHCI 75
Query: 61 VRLTKFTCNVIQNRXXXXXXXXXXXXXKCD----PIGKPVPAQRPSSNEQPGSVTGNPQS 116
++ +F N +++ D +G PVP ++ + T N
Sbjct: 76 CQVNRFIVNSLKDGRRVVILMDLDVLKTADMVGGTVGNPVPYNEGQGQQRSSAPTANAAP 135
Query: 117 N 117
N
Sbjct: 136 N 136
Score = 63 (27.2 bits), Expect = 2.1e-88, Sum P(2) = 2.1e-88
Identities = 30/134 (22%), Positives = 47/134 (35%)
Query: 26 RFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNRXXXXXXXXXX 84
R+R+++SDG + MLATQ N LV L + ++ +F N +++
Sbjct: 40 RYRVLMSDGVNTLSSFMLATQLNPLVEEERLSAHCICQVNRFIVNSLKDGRRVVILMDLD 99
Query: 85 XXXKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPAA 144
D +G G+V GNP G Q + + P
Sbjct: 100 VLKTADMVG--------------GTV-GNPVPYNEGQGQQRSSAPTANAAPNKPQQQDGN 144
Query: 145 RHVGSNLPPNYFKP 158
V + P Y P
Sbjct: 145 LSVAGSAAPKYHAP 158
>ZFIN|ZDB-GENE-030912-3 [details] [associations]
symbol:rpa1 "replication protein A1" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007507
"heart development" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR004365 InterPro:IPR004591
InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057 ZFIN:ZDB-GENE-030912-3
GO:GO:0005634 GO:GO:0007507 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR013955 Pfam:PF08646 eggNOG:COG1599
GeneTree:ENSGT00390000012403 KO:K07466 TIGRFAMs:TIGR00617 CTD:6117
HOGENOM:HOG000162322 HOVERGEN:HBG010502 OrthoDB:EOG4V9TQ8
EMBL:AY648787 EMBL:BC066711 IPI:IPI00481800 RefSeq:NP_956105.2
UniGene:Dr.76790 ProteinModelPortal:Q6NY74 SMR:Q6NY74 STRING:Q6NY74
PRIDE:Q6NY74 Ensembl:ENSDART00000032880 GeneID:327491
KEGG:dre:327491 InParanoid:Q6NY74 OMA:TSTIQPC NextBio:20810051
Bgee:Q6NY74 Uniprot:Q6NY74
Length = 601
Score = 842 (301.5 bits), Expect = 9.0e-90, Sum P(2) = 9.0e-90
Identities = 178/445 (40%), Positives = 275/445 (61%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
S+++PIA+LNPY KWTI+ARVT K +R ++N RGDGK+F +L+D + GEIR T FN
Sbjct: 169 SKVVPIASLNPYQSKWTIRARVTNKSAIRTWSNSRGDGKLFSMELVD-ESGEIRATGFNN 227
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
D+F+ +E GK++ +S+G+LK A K F+ L ND E+ L+ + + C ED +P Q
Sbjct: 228 EVDKFFSLIEQGKVFYISKGTLKIANKQFSSLKNDYEMTLNGETSIIPC-EDSNDVPMLQ 286
Query: 337 FHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTL 396
F I D+E E ++++D+IGV A +M KN E KR + L DMSGR ++LT+
Sbjct: 287 CDFVSIADLESREKDTILDVIGVCKNAEDVARIMTKNSREVSKRNIQLIDMSGRVIQLTM 346
Query: 397 WGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRL 455
WG+ DG SG PILA+K R+SDF G+ + T+ ++ + I PD PEA++L
Sbjct: 347 WGSDAETFDG--------SGQ-PILAIKGARLSDFGGRSLSTLYSSTVMINPDIPEAYKL 397
Query: 456 KEWFEKEGK--NTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYI 513
+ W++KEG + QS++ R G + KT++++K+E LG +K D+ + ATIVYI
Sbjct: 398 RGWYDKEGHALDGQSMTELRGPGGGGNTNW-KTLAEVKNEHLGHGDKADYFSCIATIVYI 456
Query: 514 KCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLT 573
+ +N Y ACP + CNKKV++ +G + C++CD+ + YR +L I D
Sbjct: 457 RKENCLYQACP----SKDCNKKVVDQQNGMFRCEKCDKEFPDFKYRLMLSANIADFGDNQ 512
Query: 574 WVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQ 633
WVT FQ+ AE ++G ++ L LK D N+ F EV ++A F ++F+ +VK ET++DE
Sbjct: 513 WVTCFQDTAETLLGQNSSYLGQLK--DTNEAAFDEVFQHANFNTFVFRNRVKLETYNDES 570
Query: 634 RVKSTVVKAERYNYSSET-RFILDL 657
R+K TVV A+ ++ + R I+++
Sbjct: 571 RIKVTVVDAKPVDHREYSKRLIINI 595
Score = 73 (30.8 bits), Expect = 9.0e-90, Sum P(2) = 9.0e-90
Identities = 28/105 (26%), Positives = 44/105 (41%)
Query: 26 RFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNRXXXXXXXXXX 84
RFR+++SDG + ML+TQ N + L V L + NV+++
Sbjct: 40 RFRVMMSDGLHTMSSFMLSTQLNPMAEQNQLATNCVCVLKRSVTNVLKDGRRVVVILDIE 99
Query: 85 XXXKCD--P--IGKPVP-----AQRPSSNEQPGSVTGNPQSNATG 120
D P IG P P ++ PS+ P + PQ+ + G
Sbjct: 100 VLKSADQMPGKIGDPTPYVEGQSKAPSTAPAPTARPLQPQNGSDG 144
>UNIPROTKB|E2R436 [details] [associations]
symbol:RPA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051276 "chromosome organization"
evidence=IEA] [GO:0048873 "homeostasis of number of cells within a
tissue" evidence=IEA] [GO:0030097 "hemopoiesis" evidence=IEA]
[GO:0016605 "PML body" evidence=IEA] [GO:0015629 "actin
cytoskeleton" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007126 "meiosis"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0001673 "male germ cell nucleus"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 GO:GO:0007126 GO:GO:0005737 GO:GO:0003677
GO:GO:0015629 GO:GO:0016605 GO:GO:0008284 GO:GO:0006260
GO:GO:0001701 GO:GO:0003682 GO:GO:0001673 GO:GO:0048873
GO:GO:0000724 GO:GO:0030097 GO:GO:0000794 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0051276 GO:GO:0005662
InterPro:IPR013955 Pfam:PF08646 GeneTree:ENSGT00390000012403
KO:K07466 TIGRFAMs:TIGR00617 OMA:ICQVNRF EMBL:AAEX03006697
RefSeq:XP_003639310.1 ProteinModelPortal:E2R436
Ensembl:ENSCAFT00000030554 GeneID:100855690 KEGG:cfa:100855690
NextBio:20864074 Uniprot:E2R436
Length = 616
Score = 826 (295.8 bits), Expect = 9.0e-90, Sum P(2) = 9.0e-90
Identities = 170/441 (38%), Positives = 261/441 (59%)
Query: 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAV 277
+++PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D + GEIR T FN
Sbjct: 183 KVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNEQ 241
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
D+F+ ++ K+Y +S+G LK A K F + ND E+ + + V C ED +P QF
Sbjct: 242 VDKFFPLIDMNKVYYISKGILKIANKQFTAVKNDYEMTFNNETSVMPC-EDGHHLPTVQF 300
Query: 338 HFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTL 396
F I D+E +S++D+IG+ SY T ++ N E KR ++L DMSG+ V TL
Sbjct: 301 DFTGIGDLESKTKDSLIDIIGICKSYEEATKITVKSNNREVSKRNIYLMDMSGKVVTATL 360
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
WG +D R D P++A+K RVSDF G+ + +S++ + + PD PEA++L+
Sbjct: 361 WG----EDADRF----DGSRQPVMAIKGARVSDFGGRSLSVLSSSTIIVNPDIPEAYKLR 412
Query: 457 EWFEKEGKNTQSVSISR-DSLSVGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVYIK 514
WF+ EG+ +SIS S G + KT+ ++K E LG +K D+ + AT+VY++
Sbjct: 413 GWFDSEGQALDGISISDLKSGGTGGGNTNWKTLYEVKSENLGHGDKADYFSSVATVVYLR 472
Query: 515 CDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTW 574
+N Y ACP + CNKKV++ +G + C++CD YR IL I D W
Sbjct: 473 KENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDSEFPSFKYRMILSVNIADFQENQW 528
Query: 575 VTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQR 634
VT FQE AE I+G + L LK ++N++ F EV +NA F + F+++VK ET++DE R
Sbjct: 529 VTCFQESAEAIIGQNTAYLGELK--EKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESR 586
Query: 635 VKSTVVKAERYNYSSETRFIL 655
+K+TV+ + +Y R ++
Sbjct: 587 IKATVMDVKPVDYREYGRRLI 607
Score = 89 (36.4 bits), Expect = 9.0e-90, Sum P(2) = 9.0e-90
Identities = 31/124 (25%), Positives = 54/124 (43%)
Query: 2 PVLQVMDLKLVVSKXXXXXXXXXXRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQV++++ + + R+R+++SDG + MLATQ N LV L +
Sbjct: 23 PILQVINIRPITT------GNSPPRYRLLMSDGLNTLSSFMLATQLNPLVEEEQLSSNCI 76
Query: 61 VRLTKFTCNVIQNRXXXXXXXXXXXXXKCDP----IGKPVPAQRPSSNEQ--PGSVTG-N 113
++ +F N +++ + IG PVP +Q P V+ N
Sbjct: 77 CQINRFIVNTLKDGRRVVILMELNILKSAEAVGLKIGNPVPYNEGHGQQQAVPSPVSAAN 136
Query: 114 PQSN 117
P +N
Sbjct: 137 PPAN 140
>UNIPROTKB|F1RHH4 [details] [associations]
symbol:RPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006260 "DNA replication" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR013955 Pfam:PF08646 GeneTree:ENSGT00390000012403
KO:K07466 TIGRFAMs:TIGR00617 CTD:6117 EMBL:CU914290
RefSeq:XP_003131870.1 UniGene:Ssc.11114 Ensembl:ENSSSCT00000019397
GeneID:100525428 KEGG:ssc:100525428 Uniprot:F1RHH4
Length = 616
Score = 832 (297.9 bits), Expect = 2.4e-89, Sum P(2) = 2.4e-89
Identities = 172/443 (38%), Positives = 262/443 (59%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
++++PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D + GEIR T FN
Sbjct: 182 AKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNE 240
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
D+F+ ++ K+Y S+G+LK A K F + ND E+ + V C ED +P Q
Sbjct: 241 QVDKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFSNETSVMPC-EDGHHLPTVQ 299
Query: 337 FHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F I D+E +S+VD+IG+ +Y T ++ E KR ++L DMSG+ V T
Sbjct: 300 FDFTGIADLENKSKDSLVDIIGICKNYEDVTKITVKSTNREVSKRNIYLMDMSGKVVNAT 359
Query: 396 LWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
LWG + DG R P++A+K RVSDF G+ + +S++ + + PD PEA++
Sbjct: 360 LWGEDADKFDGSRQ---------PVMAIKGARVSDFGGRSLSILSSSTVIVNPDIPEAYK 410
Query: 455 LKEWFEKEGKNTQSVSISR-DSLSVGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVY 512
L+ WF+ EG+ VSIS S +G ++ KT+ ++K E LG +KPD+ + AT+VY
Sbjct: 411 LRGWFDSEGQALDGVSISDLKSGGIGGSNTNWKTLYEVKSENLGQGDKPDYFSAVATVVY 470
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
++ +N Y ACP + CNKKV++ +G + C++CD YR IL I D
Sbjct: 471 LRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQEN 526
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
WVT FQE AE I+G S L LK ++N++ F EV +NA F + F+++VK ET++DE
Sbjct: 527 QWVTCFQESAEAILGQSTAYLGELK--EKNEQAFEEVFQNANFRSFTFRIRVKLETYNDE 584
Query: 633 QRVKSTVVKAERYNYSSETRFIL 655
R+K TV+ + +Y R ++
Sbjct: 585 SRIKGTVMDVKPVDYKEYGRRLI 607
Score = 79 (32.9 bits), Expect = 2.4e-89, Sum P(2) = 2.4e-89
Identities = 30/125 (24%), Positives = 51/125 (40%)
Query: 2 PVLQVMDLKLVVSKXXXXXXXXXXRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQV++++ + + R+R+++SDG + MLATQ N LV L +
Sbjct: 23 PILQVINIRPITT------GNNPPRYRLLMSDGLNTLSSFMLATQLNPLVEEERLSSNCI 76
Query: 61 VRLTKFTCNVIQNRXXXXXXXXXXXXXKCDP----IGKPVPAQRPSSNEQ----PGSVTG 112
++ +F N +++ + IG PVP + P S
Sbjct: 77 CQINRFIVNTLKDGRRVVILMDLEVLKSAEAVGVKIGNPVPYNEGHGQQPVVPPPVSAAS 136
Query: 113 NPQSN 117
P SN
Sbjct: 137 PPTSN 141
>UNIPROTKB|I3LHB2 [details] [associations]
symbol:RPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006260 "DNA replication" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR013955 Pfam:PF08646 GeneTree:ENSGT00390000012403
TIGRFAMs:TIGR00617 OMA:ICQVNRF EMBL:CU914290
Ensembl:ENSSSCT00000029329 Uniprot:I3LHB2
Length = 625
Score = 832 (297.9 bits), Expect = 3.9e-89, Sum P(2) = 3.9e-89
Identities = 172/443 (38%), Positives = 262/443 (59%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
++++PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D + GEIR T FN
Sbjct: 191 AKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNE 249
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
D+F+ ++ K+Y S+G+LK A K F + ND E+ + V C ED +P Q
Sbjct: 250 QVDKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFSNETSVMPC-EDGHHLPTVQ 308
Query: 337 FHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F I D+E +S+VD+IG+ +Y T ++ E KR ++L DMSG+ V T
Sbjct: 309 FDFTGIADLENKSKDSLVDIIGICKNYEDVTKITVKSTNREVSKRNIYLMDMSGKVVNAT 368
Query: 396 LWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
LWG + DG R P++A+K RVSDF G+ + +S++ + + PD PEA++
Sbjct: 369 LWGEDADKFDGSRQ---------PVMAIKGARVSDFGGRSLSILSSSTVIVNPDIPEAYK 419
Query: 455 LKEWFEKEGKNTQSVSISR-DSLSVGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVY 512
L+ WF+ EG+ VSIS S +G ++ KT+ ++K E LG +KPD+ + AT+VY
Sbjct: 420 LRGWFDSEGQALDGVSISDLKSGGIGGSNTNWKTLYEVKSENLGQGDKPDYFSAVATVVY 479
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
++ +N Y ACP + CNKKV++ +G + C++CD YR IL I D
Sbjct: 480 LRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQEN 535
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
WVT FQE AE I+G S L LK ++N++ F EV +NA F + F+++VK ET++DE
Sbjct: 536 QWVTCFQESAEAILGQSTAYLGELK--EKNEQAFEEVFQNANFRSFTFRIRVKLETYNDE 593
Query: 633 QRVKSTVVKAERYNYSSETRFIL 655
R+K TV+ + +Y R ++
Sbjct: 594 SRIKGTVMDVKPVDYKEYGRRLI 616
Score = 77 (32.2 bits), Expect = 3.9e-89, Sum P(2) = 3.9e-89
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 2 PVLQVMDLKLVVSKXXXXXXXXXXRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQV++++ + + R+R+++SDG + MLATQ N LV L +
Sbjct: 23 PILQVINIRPITT------GNNPPRYRLLMSDGLNTLSSFMLATQLNPLVEEERLSSNCI 76
Query: 61 VRLTKFTCNVIQN 73
++ +F N +++
Sbjct: 77 CQINRFIVNTLKD 89
>MGI|MGI:1915525 [details] [associations]
symbol:Rpa1 "replication protein A1" species:10090 "Mus
musculus" [GO:0000724 "double-strand break repair via homologous
recombination" evidence=IMP] [GO:0000793 "condensed chromosome"
evidence=IDA] [GO:0000794 "condensed nuclear chromosome"
evidence=IDA] [GO:0000800 "lateral element" evidence=IDA]
[GO:0001673 "male germ cell nucleus" evidence=IDA] [GO:0001701 "in
utero embryonic development" evidence=IMP] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005662 "DNA replication factor A complex"
evidence=ISO] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0007126 "meiosis" evidence=IDA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IMP] [GO:0016605 "PML body" evidence=ISO] [GO:0030097
"hemopoiesis" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048873 "homeostasis of number of cells within a
tissue" evidence=IMP] [GO:0051276 "chromosome organization"
evidence=IMP] InterPro:IPR004365 InterPro:IPR004591
InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057 MGI:MGI:1915525
GO:GO:0007126 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
GO:GO:0008284 GO:GO:0006260 GO:GO:0001701 GO:GO:0003682
Reactome:REACT_120463 GO:GO:0001673 GO:GO:0048873 GO:GO:0000724
GO:GO:0030097 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0051276 Reactome:REACT_27235 GO:GO:0000800 InterPro:IPR013955
Pfam:PF08646 eggNOG:COG1599 GeneTree:ENSGT00390000012403 KO:K07466
TIGRFAMs:TIGR00617 CTD:6117 HOGENOM:HOG000162322 HOVERGEN:HBG010502
OrthoDB:EOG4V9TQ8 ChiTaRS:RPA1 EMBL:AK148035 EMBL:AK150785
EMBL:AK151590 EMBL:AK153144 EMBL:AK165316 EMBL:AK165944
EMBL:AK167598 EMBL:AK169599 EMBL:AL603834 EMBL:BC019119
IPI:IPI00124520 RefSeq:NP_001157695.1 RefSeq:NP_080929.1
UniGene:Mm.180734 ProteinModelPortal:Q8VEE4 SMR:Q8VEE4
IntAct:Q8VEE4 STRING:Q8VEE4 PaxDb:Q8VEE4 PRIDE:Q8VEE4
Ensembl:ENSMUST00000092907 GeneID:68275 KEGG:mmu:68275
UCSC:uc007kdi.2 NextBio:326898 Bgee:Q8VEE4 CleanEx:MM_RPA1
Genevestigator:Q8VEE4 GermOnline:ENSMUSG00000000751 Uniprot:Q8VEE4
Length = 623
Score = 812 (290.9 bits), Expect = 2.1e-88, Sum P(2) = 2.1e-88
Identities = 173/456 (37%), Positives = 266/456 (58%)
Query: 205 ANRGLVGKSE-VPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLD 263
A GL+ S S+++PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D
Sbjct: 178 AGTGLLQPSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD 237
Query: 264 SDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQ 323
+ GEIR T FN D+F+ +E K+Y S+G+LK A K F+ + ND E+ + + V
Sbjct: 238 -ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGALKIANKQFSAVKNDYEMTFNNETSVL 296
Query: 324 LCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTL 382
C ED +P QF F I D+E +++VD+IG+ SY ++ N E KR +
Sbjct: 297 PC-EDGHHLPTVQFDFTGIGDLESKAKDALVDIIGICKSYEDSIKITVKSNNREVAKRNI 355
Query: 383 HLRDMSGRSVELTLWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTT 441
+L DMSG+ V TLWG + DG R P++A+K RVSDF G+ + +S++
Sbjct: 356 YLMDMSGKVVTTTLWGEDADKFDGSRQ---------PVMAIKGARVSDFGGRSLSVLSSS 406
Query: 442 QLFIEPDFPEAHRLKEWFEKEGKNTQSVSIS-RDSLSVGRADIR-KTVSQIKDEGLGTKE 499
+ + PD PEA++L+ WF+ EG+ VSIS S G + KT+ + K E LG +
Sbjct: 407 TVIVNPDIPEAYKLRGWFDSEGQALDGVSISDHRSGGAGGGNTNWKTLHEAKSENLGQGD 466
Query: 500 KPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYR 559
K D+ + A +V+++ +N Y ACP + CNKKV++ +G + C++CD+ YR
Sbjct: 467 KADYFSTVAAVVFLRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDREFPNFKYR 522
Query: 560 YILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYL 619
IL I D WVT FQE AE I+G + L LK ++N++ F EV +NA F +
Sbjct: 523 MILSANIADFQENQWVTCFQESAEAILGQNTMYLGELK--EKNEQAFEEVFQNANFRSFT 580
Query: 620 FKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
F+++VK ET++DE R+K+TV+ + ++ R ++
Sbjct: 581 FRIRVKLETYNDESRIKATVMDVKPVDFRDYGRRLI 616
Score = 90 (36.7 bits), Expect = 2.1e-88, Sum P(2) = 2.1e-88
Identities = 34/129 (26%), Positives = 54/129 (41%)
Query: 2 PVLQVMDLKLVVSKXXXXXXXXXXRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQV++++ + R+R+++SDG + MLATQ N LV G L V
Sbjct: 23 PILQVINIRPI------STGNRSPRYRLLMSDGLNTLSSFMLATQLNTLVEGGQLASNCV 76
Query: 61 VRLTKFTCNVIQNRXXXXXXXXXXXXXKCDP----IGKPVP------AQRPSSNEQPGSV 110
++ KF N +++ + IG PVP Q+ +Q
Sbjct: 77 CQVHKFIVNTLKDGRKVVVLMDLEVMKSAEDVGLKIGNPVPYNEGYGQQQQQQQQQQQQA 136
Query: 111 TGNPQSNAT 119
+P S AT
Sbjct: 137 VPSPASAAT 145
>ASPGD|ASPL0000065893 [details] [associations]
symbol:AN7423 species:162425 "Emericella nidulans"
[GO:0005829 "cytosol" evidence=IEA] [GO:0005662 "DNA replication
factor A complex" evidence=IEA] [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] InterPro:IPR004365
InterPro:IPR004591 InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 EMBL:BN001304
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR013955 Pfam:PF08646 TIGRFAMs:TIGR00617 OMA:QNKWVIK
EnsemblFungi:CADANIAT00000512 Uniprot:C8VB95
Length = 603
Score = 779 (279.3 bits), Expect = 1.9e-87, Sum P(2) = 1.9e-87
Identities = 169/475 (35%), Positives = 269/475 (56%)
Query: 190 ARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNN 249
A+ AP S R + G + P+ I PI A++PY KWTIKAR T+K ++ ++
Sbjct: 143 AKAQNAPSQISSRAQHTRPMQGSA--PATIYPIEAISPYAHKWTIKARCTSKSPIKTFHG 200
Query: 250 QRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGS-LKPAQKNFNHL 308
+ GDG +F +LLD D GEIR T FN Y + G++Y +S ++ A+K F +L
Sbjct: 201 RSGDGTLFSVNLLD-DSGEIRATGFNEQCSALYDLFQEGEVYYISSPCRVQIAKKQFTNL 259
Query: 309 HNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTAS 368
+ND E+ + ++V+ E+ +P+ +F+F I D++ +E ++ +D+IGV+ + T
Sbjct: 260 NNDYELTFERDTLVEKA-EEQNDVPQVRFNFTTIGDLQSVEKDTTIDVIGVLKDVGETTQ 318
Query: 369 LMRKNGTET-QKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRV 427
++ K + KR L L D +G SV LT+WG + +S ++A K +V
Sbjct: 319 IVSKTTKKPYDKRELTLVDNTGFSVRLTIWGT----TAMNFAASPES----VVAFKGVKV 370
Query: 428 SDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVS--ISRDSLSVGRADIRK 485
SDF GK + +S+ + ++PD EAHRLK W++ +G+N S S ++S + D K
Sbjct: 371 SDFGGKSLSLLSSGSVTVDPDIEEAHRLKGWYDAQGRNENFASHASSVGTMSATKRDQLK 430
Query: 486 TVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWH 545
T++Q+++E LG E+P + T+ AT+VYIK DN CY AC + G CNKKV G+W
Sbjct: 431 TIAQVREEQLGMSEEPSYFTLRATVVYIKQDNLCYPAC-LSEG---CNKKVTEVDPGQWR 486
Query: 546 CDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEK 605
C+RCD++ +YRYI+ + DHTG ++ F + ++GMSA L L QND K
Sbjct: 487 CERCDKTHPRAEYRYIMLVNVSDHTGQLYLNCFDDVGRLLLGMSANQLMELP---QNDGK 543
Query: 606 -FGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMD 659
G V++NAT + F + K + + D+QR++ V A+ NYS E + D++D
Sbjct: 544 ALGNVIQNATCRTWTFGCRAKIDHYGDQQRIRYQVSYAKPVNYSEEASRLADIID 598
Score = 114 (45.2 bits), Expect = 1.9e-87, Sum P(2) = 1.9e-87
Identities = 30/93 (32%), Positives = 46/93 (49%)
Query: 26 RFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNRXXXXXXXXXXX 85
R+R+V SD S Q MLA Q N VT GLL+ G VRL +F N ++ +
Sbjct: 46 RYRVVFSDISNYVQTMLAIQANHFVTDGLLRKGCFVRLKQFQANSVKGKKILIVLDLEVL 105
Query: 86 XX--KCDPIGKPVPAQRPSSNE---QPGSVTGN 113
+ + +G+P P + + E QP +++ N
Sbjct: 106 KELGEAEKLGEPKPLESKAEEEEKPQPTTISSN 138
>POMBASE|SPBC660.13c [details] [associations]
symbol:ssb1 "DNA replication factor A subunit Ssb1"
species:4896 "Schizosaccharomyces pombe" [GO:0000723 "telomere
maintenance" evidence=IGI;IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=ISO] [GO:0000781
"chromosome, telomeric region" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005662 "DNA replication factor A complex"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IMP] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=ISO] [GO:0006281 "DNA repair" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] InterPro:IPR004365
InterPro:IPR004591 InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057
PomBase:SPBC660.13c GO:GO:0005829 GO:GO:0046872 GO:GO:0003677
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0000724
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000781
GO:GO:0000723 GO:GO:0006269 GO:GO:0005662 InterPro:IPR013955
Pfam:PF08646 eggNOG:COG1599 KO:K07466 TIGRFAMs:TIGR00617
HOGENOM:HOG000162322 OMA:QNKWVIK EMBL:U59385 EMBL:U75446 PIR:T40625
RefSeq:NP_595092.1 ProteinModelPortal:Q92372 DIP:DIP-29237N
IntAct:Q92372 STRING:Q92372 EnsemblFungi:SPBC660.13c.1
GeneID:2541158 KEGG:spo:SPBC660.13c OrthoDB:EOG4F7RTC
NextBio:20802271 Uniprot:Q92372
Length = 609
Score = 720 (258.5 bits), Expect = 1.2e-83, Sum P(2) = 1.2e-83
Identities = 153/479 (31%), Positives = 265/479 (55%)
Query: 185 YASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGEL 244
Y +N A T AP P M + + + I PI L+PY KWTI+ARVT K E+
Sbjct: 151 YGNNAAATAPAP----PPMMKKPA--APNSLSTIIYPIEGLSPYQNKWTIRARVTNKSEV 204
Query: 245 RHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKN 304
+H++NQRG+GK+F +LLD + GEIR T FN D FY ++ G +Y +SR + A+K
Sbjct: 205 KHWHNQRGEGKLFSVNLLD-ESGEIRATGFNDQVDAFYDILQEGSVYYISRCRVNIAKKQ 263
Query: 305 FNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYIS 364
+ ++ N+ E+ + + ++ ED ++P +F F + +V + ++V+D+IGV+ +
Sbjct: 264 YTNVQNEYELMFERDTEIRKA-EDQTAVPVAKFSFVSLQEVGDVAKDAVIDVIGVLQNVG 322
Query: 365 PTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVK 423
P + R KR + + D +G + +TLWG + + + ILA K
Sbjct: 323 PVQQITSRATSRGFDKRDITIVDQTGYEMRVTLWGKTAIEFSVSEES--------ILAFK 374
Query: 424 AGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSV--SISRDSLSV-GR 480
+V+DF G+ + ++++ + ++PD E+H LK W++ +G+ + S+ +LS GR
Sbjct: 375 GVKVNDFQGRSLSMLTSSTMSVDPDIQESHLLKGWYDGQGRGQEFAKHSVISSTLSTTGR 434
Query: 481 ADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNG 540
+ RK +++++ E LG E PD+ ++ TIVYI+ N Y ACP D CNKKV + G
Sbjct: 435 SAERKNIAEVQAEHLGMSETPDYFSLKGTIVYIRKKNVSYPACPA--AD--CNKKVFDQG 490
Query: 541 DGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVD 600
G W C++C++ YRYI+ + DHTG W+ F + + IM +A +L L+ D
Sbjct: 491 -GSWRCEKCNKEYDAPQYRYIITIAVGDHTGQLWLNVFDDVGKLIMHKTADELNDLQEND 549
Query: 601 QNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMD 659
+N F + A + Y+F+ + K++ F E RV+ TV+ + ++ E++ +++ ++
Sbjct: 550 EN--AFMNCMAEACYMPYIFQCRAKQDNFKGEMRVRYTVMSINQMDWKEESKRLINFIE 606
Score = 137 (53.3 bits), Expect = 1.2e-83, Sum P(2) = 1.2e-83
Identities = 40/123 (32%), Positives = 57/123 (46%)
Query: 2 PVLQVMDLKLVVSKXXXXXXXXXXRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P+LQV+ +K + S R+R+VLSD Q ML+TQ N LV LQ G+ V
Sbjct: 25 PILQVLTVKELNSNPTSGAPK---RYRVVLSDSINYAQSMLSTQLNHLVAENKLQKGAFV 81
Query: 62 RLTKFTCNVIQNRXXXXXXXXXXXXXK--CDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
+LT+FT NV++ R D IG P + + Q + N + T
Sbjct: 82 QLTQFTVNVMKERKILIVLGLNVLTELGVMDKIGNPAGLETVDALRQQQNEQNNASAPRT 141
Query: 120 GVS 122
G+S
Sbjct: 142 GIS 144
>RGD|1307376 [details] [associations]
symbol:Rpa1 "replication protein A1" species:10116 "Rattus
norvegicus" [GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA;ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0000794 "condensed nuclear chromosome"
evidence=ISO] [GO:0000800 "lateral element" evidence=IEA;ISO]
[GO:0001673 "male germ cell nucleus" evidence=IEA;ISO] [GO:0001701
"in utero embryonic development" evidence=IEA;ISO] [GO:0003682
"chromatin binding" evidence=IEA;ISO] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005662 "DNA replication factor A complex" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006260 "DNA
replication" evidence=IC] [GO:0007126 "meiosis" evidence=IEA;ISO]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA;ISO] [GO:0015629 "actin cytoskeleton"
evidence=IEA;ISO] [GO:0016605 "PML body" evidence=IEA;ISO]
[GO:0030097 "hemopoiesis" evidence=IEA;ISO] [GO:0048873
"homeostasis of number of cells within a tissue" evidence=IEA;ISO]
[GO:0051276 "chromosome organization" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR004365 InterPro:IPR004591
InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057 RGD:1307376
GO:GO:0007126 GO:GO:0005737 GO:GO:0015629 GO:GO:0016605
GO:GO:0008284 GO:GO:0006260 GO:GO:0001701 GO:GO:0003682
GO:GO:0001673 GO:GO:0003697 GO:GO:0048873 GO:GO:0000724
GO:GO:0030097 GO:GO:0000794 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0051276 GO:GO:0005662 InterPro:IPR013955
Pfam:PF08646 eggNOG:COG1599 GeneTree:ENSGT00390000012403 KO:K07466
TIGRFAMs:TIGR00617 CTD:6117 HOGENOM:HOG000162322 HOVERGEN:HBG010502
OMA:ICQVNRF OrthoDB:EOG4V9TQ8 HSSP:P27694 EMBL:AY325234
IPI:IPI00382200 RefSeq:NP_001041308.1 UniGene:Rn.14841 SMR:Q7TP21
STRING:Q7TP21 Ensembl:ENSRNOT00000004229 GeneID:287524
KEGG:rno:287524 InParanoid:Q7TP21 NextBio:626397
Genevestigator:Q7TP21 Uniprot:Q7TP21
Length = 680
Score = 490 (177.5 bits), Expect = 2.8e-83, Sum P(3) = 2.8e-83
Identities = 104/257 (40%), Positives = 153/257 (59%)
Query: 205 ANRGLVGK-SEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLD 263
A GL+ S S+++PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D
Sbjct: 156 AGTGLLQPTSGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD 215
Query: 264 SDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQ 323
+ GEIR T FN D+F+ +E K+Y S+G+LK A K F+ + ND E+ + + V
Sbjct: 216 -ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFSAVKNDYEMTFNNETSVL 274
Query: 324 LCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTL 382
C ED +P QF F I D+E +S+VD+IG+ SY T ++ N E KR +
Sbjct: 275 PC-EDGHHLPTVQFDFTGIGDLESKSKDSLVDIIGICKSYEDATKITVKSNNREVAKRNI 333
Query: 383 HLRDMSGRSVELTLWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTT 441
L DMSG+ V TLWG + DG R P++A+K RVSDF G+ + +S++
Sbjct: 334 CLMDMSGKVVTATLWGEDADKFDGSRQ---------PVMAIKGARVSDFGGRSLSVLSSS 384
Query: 442 QLFIEPDFPEAHRLKEW 458
+ + PD PEA++L+ W
Sbjct: 385 TVLVNPDIPEAYKLRGW 401
Score = 337 (123.7 bits), Expect = 2.8e-83, Sum P(3) = 2.8e-83
Identities = 76/210 (36%), Positives = 118/210 (56%)
Query: 458 W-FEKEGKNTQSVSIS--RDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIK 514
W F+ EG+ VSIS R + G KT+ + K E LG +K D+ + AT+V+++
Sbjct: 471 WGFDSEGQALDGVSISDLRSGGTGGSNTNWKTLYEAKSENLGQGDKADYFSTVATVVFLR 530
Query: 515 CDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTW 574
+N Y ACP + CNKKV++ +G + C++CD+ YR IL I D W
Sbjct: 531 KENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSVNIADFQENQW 586
Query: 575 VTAFQECAEEIMGMSAKDLYSLK------YVDQNDEKFGEVVRNATFTKYLFKLKVKEET 628
VT FQE AE I+G + L LK +V N++ F EV +NA F + F+++VK ET
Sbjct: 587 VTCFQESAEAILGQNTVYLGELKEKVGCVFVSMNEQAFEEVFQNANFRSFTFRIRVKLET 646
Query: 629 FSDEQRVKSTVVKAERYNYSSET-RFILDL 657
++DE R+K+TV+ + +Y + R I+++
Sbjct: 647 YNDESRIKATVIDVKPVDYRDYSKRLIMNI 676
Score = 88 (36.0 bits), Expect = 2.8e-83, Sum P(3) = 2.8e-83
Identities = 37/135 (27%), Positives = 59/135 (43%)
Query: 2 PVLQVMDLKLVVSKXXXXXXXXXXRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
PVLQV++++ + + R+R+++SDG + MLATQ N LV G L V
Sbjct: 10 PVLQVINIRPITT------GNSPPRYRLLMSDGLNTLSSFMLATQLNALVEGGQLASNCV 63
Query: 61 VRLTKFTCNVIQNRXXXXXXXXXXXXXKCDP----IGKPVP-----AQR-----PSSNEQ 106
++ +F N +++ IG PVP AQ+ P+S
Sbjct: 64 CQVHRFIVNTLKDGRRVVILMDLEVVKSAGEVGVKIGNPVPYNEGHAQQQAVSAPASAAT 123
Query: 107 PGSVTGNPQSNATGV 121
P + PQ+ + GV
Sbjct: 124 PPASKPQPQNGSLGV 138
>TAIR|locus:2142808 [details] [associations]
symbol:RPA70B "RPA70-kDa subunit B" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IEA] [GO:0006260 "DNA replication"
evidence=ISS;RCA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0010224 "response to UV-B" evidence=IMP] [GO:0000278 "mitotic
cell cycle" evidence=RCA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=RCA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0009555 "pollen development" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010389
"regulation of G2/M transition of mitotic cell cycle" evidence=RCA]
[GO:0016444 "somatic cell DNA recombination" evidence=RCA]
[GO:0016458 "gene silencing" evidence=RCA] [GO:0016568 "chromatin
modification" evidence=RCA] [GO:0031047 "gene silencing by RNA"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] [GO:0051567 "histone H3-K9 methylation" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0010224
EMBL:AL133421 InterPro:IPR013955 Pfam:PF08646 eggNOG:COG1599
KO:K07466 TIGRFAMs:TIGR00617 HOGENOM:HOG000162322 HSSP:P27694
ProtClustDB:CLSN2686716 IPI:IPI00535797 PIR:T45627
RefSeq:NP_196419.1 UniGene:At.54774 ProteinModelPortal:Q9SD82
SMR:Q9SD82 STRING:Q9SD82 EnsemblPlants:AT5G08020.1 GeneID:830696
KEGG:ath:AT5G08020 TAIR:At5g08020 InParanoid:Q9SD82 OMA:VVRISEF
PhylomeDB:Q9SD82 Genevestigator:Q9SD82 Uniprot:Q9SD82
Length = 604
Score = 760 (272.6 bits), Expect = 3.2e-79, Sum P(2) = 3.2e-79
Identities = 170/468 (36%), Positives = 266/468 (56%)
Query: 206 NRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSD 265
N + + R+ P+ +LNPY G WTIK RVT KG +R Y N RG+G VF+ +L D +
Sbjct: 144 NAAPAARMAMTRRVHPLVSLNPYQGSWTIKVRVTNKGVMRTYKNARGEGCVFNVELTDEE 203
Query: 266 GGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLC 325
G +I+ T FNA A +FY + E GK+Y +SRGSLK A K F + ND E+ L+ S V+
Sbjct: 204 GTQIQATMFNAAARKFYDRFEMGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEA 263
Query: 326 YEDDASIPRQQFHFRPINDVEGMENNS-VVDLIGVVSYISPTASLMRKNGTET-QKRTLH 383
++ P +F+F PI+++ N ++D+IGVV +SPT S+ RKN E KR +
Sbjct: 264 SNEEMFTPETKFNFVPIDELGTYVNQKDLIDVIGVVQSVSPTMSIRRKNDNEMIPKRDIT 323
Query: 384 LRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQL 443
L D + ++V ++LW + G L M D+ P++A+K+ +V F G + TIS + +
Sbjct: 324 LADETKKTVVVSLWNDLATGIGQELLDMADN--HPVIAIKSLKVGAFQGVSLSTISRSNV 381
Query: 444 FIEPDFPEAHRLKEWFEKEGKNTQSVSISR---DSLSVGRADI---RKTVSQI-KDEGLG 496
I P+ PEA +LK W++ EGK T +I S + G + R +S I + LG
Sbjct: 382 VINPNSPEATKLKSWYDAEGKETSMSAIGSGMSSSANNGSRSMYSDRVFLSHITSNPSLG 441
Query: 497 TKEKPDWITVSATIVYIKCDN-FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVE 555
+EKP + + A I +IK D Y AC + CNKKV D + C+ C + E
Sbjct: 442 -EEKPVFFSTRAYISFIKPDQTMWYRAC------KTCNKKVTEAMDSGYWCESCQKKDQE 494
Query: 556 CDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATF 615
C RYI+ ++ D TG TW++AF + AE+I+G +A DL LK + +F ++ AT+
Sbjct: 495 CSLRYIMAVKVSDSTGETWLSAFNDEAEKIIGCTADDLNDLKSEEGEVNEFQTKLKEATW 554
Query: 616 TKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKS 663
+ +LF++ V ++ ++ E+R + TV ++++ETR +L + K K+
Sbjct: 555 SSHLFRISVSQQEYNSEKRQRITVRGVSPIDFAAETRLLLQDISKNKT 602
Score = 55 (24.4 bits), Expect = 3.2e-79, Sum P(2) = 3.2e-79
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 26 RFRMVLSDGSRSQQGML-ATQRNELVTSGLLQIGSVVRLTKFTCNVIQNR 74
R+ +DG + ML AT ++++ SG +Q ++RL ++T N I +
Sbjct: 41 RYTFSANDGKMKIKAMLPATLTSDII-SGKIQNLGLIRLLEYTVNDIPGK 89
Score = 41 (19.5 bits), Expect = 9.5e-78, Sum P(2) = 9.5e-78
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 202 SMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKA 236
++ AN+ L S P ++ + L P ++T A
Sbjct: 12 TVLANQSLDSSSVRPEIVVQVVDLKPAGNRYTFSA 46
>TAIR|locus:2173527 [details] [associations]
symbol:RPA70D species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006260 "DNA replication" evidence=IEA;ISS] InterPro:IPR004365
InterPro:IPR004591 InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057
GO:GO:0005634 EMBL:CP002688 GO:GO:0003677 GO:GO:0006260
GO:GO:0004386 EMBL:AB006696 EMBL:AB008269 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR013955 Pfam:PF08646
KO:K07466 OMA:IKARVSY TIGRFAMs:TIGR00617 HOGENOM:HOG000162322
HSSP:P27694 EMBL:BT003950 IPI:IPI00525740 RefSeq:NP_200908.1
UniGene:At.29131 ProteinModelPortal:Q9FME0 SMR:Q9FME0 STRING:Q9FME0
EnsemblPlants:AT5G61000.1 GeneID:836221 KEGG:ath:AT5G61000
TAIR:At5g61000 InParanoid:Q9FME0 PhylomeDB:Q9FME0
ProtClustDB:CLSN2686716 ArrayExpress:Q9FME0 Genevestigator:Q9FME0
Uniprot:Q9FME0
Length = 629
Score = 743 (266.6 bits), Expect = 9.5e-78, Sum P(2) = 9.5e-78
Identities = 166/469 (35%), Positives = 263/469 (56%)
Query: 206 NRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSD 265
N + + R+ P+ +LNPY G WTIK RVT KG +R+Y N RG+G VF+ +L D +
Sbjct: 168 NAAPAARMAMTRRVHPLVSLNPYQGNWTIKVRVTNKGVMRNYKNARGEGCVFNVELTDEE 227
Query: 266 GGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLC 325
G +I+ T FN A +F+ + + GK+Y +SRGSLK A K F + ND E+ L+ S V+
Sbjct: 228 GTQIQATMFNDAARKFFDRFQLGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEA 287
Query: 326 YEDDASIPRQQFHFRPINDVEGMENNS--VVDLIGVVSYISPTASLMRKNGTET-QKRTL 382
++ IP +F+F PI ++ G+ N ++DLIGVV +SPT S+ R+ E KR +
Sbjct: 288 SSEEMFIPETKFNFVPIEEL-GLYVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRDI 346
Query: 383 HLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQ 442
L D S ++V ++LW + G L M D P++A+K+ +V DF G + TIS +
Sbjct: 347 TLADESRKTVVVSLWNDLATGIGQELLDMADQS--PVIAIKSLKVGDFQGVSLSTISRSN 404
Query: 443 LFIEPDFPEAHRLKEWFEKEGKNTQSVSISRD---SLSVGRADI---RKTVSQIKDEGLG 496
+ I P+ PEA +LK WF+ EGK SI S G + R +S I
Sbjct: 405 VVINPESPEAKKLKSWFDSEGKEISMSSIGSGMSPSAKNGSRSLYTDRVLLSHITSNPSL 464
Query: 497 TKEKPDWITVSATIVYIKCDN-FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVE 555
+EKP + + A I +IK D Y AC + CNKKV D + C+ C + E
Sbjct: 465 FEEKPVFFSTRAYISFIKPDQTMWYQAC------KTCNKKVTEALDSGYWCEGCQRKYEE 518
Query: 556 CDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATF 615
C RYI+ ++ D +G TW+++F + AE+I+G SA +L LK + ++ ++ AT+
Sbjct: 519 CSLRYIMAVKVTDSSGETWISSFNDEAEKILGCSADELNKLKSEEGEVNEYQTKLKEATW 578
Query: 616 TKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFIL-DLMDKLKS 663
+ ++F++ V + ++ E+R + TV ++++ETR +L D+ +K K+
Sbjct: 579 SSHVFRVSVTQNEYNGEKRQRVTVKGVAPLDFAAETRLLLQDISNKNKT 627
Score = 58 (25.5 bits), Expect = 9.5e-78, Sum P(2) = 9.5e-78
Identities = 16/74 (21%), Positives = 30/74 (40%)
Query: 26 RFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNRXXXXXXXXXXX 85
R+ +DG + M + SG +Q ++RL FT N I ++
Sbjct: 41 RYTFSANDGKTKVKAMFTASLTPEIISGKIQNLGLIRLIDFTVNDISSKSTKYFLVT--- 97
Query: 86 XXKCDPIGKPVPAQ 99
KC+ +G + ++
Sbjct: 98 --KCEAVGSVLDSE 109
>FB|FBgn0010173 [details] [associations]
symbol:RpA-70 "Replication Protein A 70" species:7227
"Drosophila melanogaster" [GO:0003697 "single-stranded DNA binding"
evidence=NAS;IDA] [GO:0006261 "DNA-dependent DNA replication"
evidence=NAS;IDA] [GO:0005662 "DNA replication factor A complex"
evidence=NAS;IDA] [GO:0005634 "nucleus" evidence=NAS;IDA]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0048812 "neuron projection morphogenesis" evidence=IMP]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 EMBL:AE014297 GO:GO:0005875 GO:GO:0007095
GO:GO:0007052 GO:GO:0046872 GO:GO:0006261 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0005662
InterPro:IPR013955 Pfam:PF08646 eggNOG:COG1599
GeneTree:ENSGT00390000012403 KO:K07466 TIGRFAMs:TIGR00617
EMBL:Z70277 EMBL:AY069331 RefSeq:NP_524274.1 UniGene:Dm.2177
ProteinModelPortal:Q24492 SMR:Q24492 DIP:DIP-22335N IntAct:Q24492
MINT:MINT-747966 STRING:Q24492 PaxDb:Q24492 PRIDE:Q24492
EnsemblMetazoa:FBtr0081867 GeneID:40972 KEGG:dme:Dmel_CG9633
CTD:40972 FlyBase:FBgn0010173 InParanoid:Q24492 OMA:QNKWVIK
OrthoDB:EOG444J1R PhylomeDB:Q24492 GenomeRNAi:40972 NextBio:821535
Bgee:Q24492 GermOnline:CG9633 Uniprot:Q24492
Length = 603
Score = 716 (257.1 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
Identities = 158/468 (33%), Positives = 256/468 (54%)
Query: 199 QSPSMYANRGLVGKSEVPSRII-PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVF 257
+ PS N +V S + S + PI++L+PY KW IKARVT+K +R ++N RG+GK+F
Sbjct: 145 KEPSHNNNNNIVMNSSINSGMTHPISSLSPYQNKWVIKARVTSKSGIRTWSNARGEGKLF 204
Query: 258 HFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLD 317
DL+D + GEIR T F D+FY ++ +Y +S+ LKPA K ++ L+N E+
Sbjct: 205 SMDLMD-ESGEIRATAFKEQCDKFYDLIQVDSVYYISKCQLKPANKQYSSLNNAYEMTFS 263
Query: 318 MTSMVQLCYE-DDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGT 375
++VQLC + DD IP +++ PI+DV GMEN + VD IG+ + S + R
Sbjct: 264 GETVVQLCEDTDDDPIPEIKYNLVPISDVSGMENKAAVDTIGICKEVGELQSFVARTTNK 323
Query: 376 ETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNG-KV 434
E +KR + L DMS ++ LTLWG DD + D V P++ VK R+++FNG K
Sbjct: 324 EFKKRDITLVDMSNSAISLTLWG----DDAVNF----DGHVQPVILVKGTRINEFNGGKS 375
Query: 435 VGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEG 494
+ + + I PD PEAH+L+ WF+ G ++ + +S + + T+ +
Sbjct: 376 LSLGGGSIMKINPDIPEAHKLRGWFDNGGGDSVANMVSARTGGGSFSTEWMTLKDARARN 435
Query: 495 LGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVV 554
LG+ +KPD+ A + +K +N Y ACP CNKKV++ G+ ++ C++C+
Sbjct: 436 LGSGDKPDYFQCKAVVHIVKQENAFYRACP----QSDCNKKVVDEGNDQFRCEKCNALFP 491
Query: 555 ECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNA- 613
YR ++ I D T WV++F E E+++G +++++ +ND E + +A
Sbjct: 492 NFKYRLLINMSIGDWTSNRWVSSFNEVGEQLLGHTSQEVGEAL---ENDPAKAEQIFSAL 548
Query: 614 TFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
FT ++FKL+ K E + D R K TV N+ + +L + +L
Sbjct: 549 NFTSHIFKLRCKNEVYGDMTRNKLTVQSVAPINHKEYNKHLLKELQEL 596
Score = 84 (34.6 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
Identities = 34/141 (24%), Positives = 64/141 (45%)
Query: 2 PVLQVMDLKLVVSKXXXXXXXXXXRFRMVLSDGSR-SQQGMLATQRNELVTSGLLQIGSV 60
PVLQ++ +K + S R+R+++SDG + MLA+Q N + +G L+ ++
Sbjct: 23 PVLQILAIKKINS------AADSERYRILISDGKYFNSYAMLASQLNVMQHNGELEEFTI 76
Query: 61 VRLTKFTCNVIQNRXXXXXXXXXXXXXKCDP-------IGKPVPAQRPSSNE---QPGSV 110
V+L K+ +++ +P IG+PV + + + +P +V
Sbjct: 77 VQLDKYVTSLVGKDGAGKRVLIISELTVVNPGAEVKSKIGEPVTYENAAKQDLAPKP-AV 135
Query: 111 TGNPQSNATGVSLQHHNNTRV 131
T N + A H+NN +
Sbjct: 136 TSNSKPIAKKEP-SHNNNNNI 155
>SGD|S000000065 [details] [associations]
symbol:RFA1 "Subunit of heterotrimeric Replication Protein A
(RPA)" species:4932 "Saccharomyces cerevisiae" [GO:0000781
"chromosome, telomeric region" evidence=IMP] [GO:0000722 "telomere
maintenance via recombination" evidence=IGI] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA;IMP] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0016567 "protein ubiquitination"
evidence=IMP;IPI] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IMP] [GO:0006268 "DNA unwinding involved in
replication" evidence=IDA] [GO:0045184 "establishment of protein
localization" evidence=IPI] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0006312 "mitotic recombination"
evidence=IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IDA] [GO:0007004 "telomere maintenance via telomerase"
evidence=IPI] [GO:0005662 "DNA replication factor A complex"
evidence=IDA] [GO:0000794 "condensed nuclear chromosome"
evidence=IDA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IGI] [GO:0030491 "heteroduplex
formation" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 SGD:S000000065 GO:GO:0005737
EMBL:BK006935 GO:GO:0046872 GO:GO:0043565 GO:GO:0016567
GO:GO:0045184 GO:GO:0003690 GO:GO:0003697 GO:GO:0000724
GO:GO:0000794 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0000781 GO:GO:0007131 GO:GO:0007004 GO:GO:0000722
GO:GO:0006289 EMBL:L22015 GO:GO:0006268 GO:GO:0005662
InterPro:IPR013955 Pfam:PF08646 GO:GO:0030491 eggNOG:COG1599
GeneTree:ENSGT00390000012403 KO:K07466 OMA:IKARVSY
TIGRFAMs:TIGR00617 HOGENOM:HOG000162322 OrthoDB:EOG4F7RTC
EMBL:X59748 EMBL:M60262 EMBL:S64901 PIR:S20145 RefSeq:NP_009404.1
PDB:1YNX PDBsum:1YNX ProteinModelPortal:P22336 SMR:P22336
DIP:DIP-2512N IntAct:P22336 MINT:MINT-476157 STRING:P22336
PaxDb:P22336 PeptideAtlas:P22336 EnsemblFungi:YAR007C GeneID:851266
KEGG:sce:YAR007C CYGD:YAR007c EvolutionaryTrace:P22336
NextBio:968234 Genevestigator:P22336 GermOnline:YAR007C
Uniprot:P22336
Length = 621
Score = 756 (271.2 bits), Expect = 2.5e-77, Sum P(2) = 2.5e-77
Identities = 164/487 (33%), Positives = 278/487 (57%)
Query: 186 ASNYARTPQAPYMQSPSMYAN-RGLVGKSEVPSRIIPIAA---LNPYMGKWTIKARVTAK 241
ASN A P + S ++ AN R ++ + PI A L+PY WTIKARV+ K
Sbjct: 149 ASN-AGVPDMLHSNS-NLNANERKFANENPNSQKTRPIFAIEQLSPYQNVWTIKARVSYK 206
Query: 242 GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPA 301
GE++ ++NQRGDGK+F+ + LD+ G EIR T FN A +F ++ GK+Y VS+ L+PA
Sbjct: 207 GEIKTWHNQRGDGKLFNVNFLDTSG-EIRATAFNDFATKFNEILQEGKVYYVSKAKLQPA 265
Query: 302 QKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVS 361
+ F +L + E+ LD ++++ C+ D++++P+ F+F ++ ++ E NS VD++G++
Sbjct: 266 KPQFTNLTHPYELNLDRDTVIEECF-DESNVPKTHFNFIKLDAIQNQEVNSNVDVLGIIQ 324
Query: 362 YISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILA 421
I+P L + G + +R + + D SG S+ + LW D L G + A
Sbjct: 325 TINPHFELTSRAGKKFDRRDITIVDDSGFSISVGLWNQQALDFNL------PEG--SVAA 376
Query: 422 VKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGR- 480
+K RV+DF GK + ++ L P+ PEA+ LK W++ +G+N +++ ++ G+
Sbjct: 377 IKGVRVTDFGGKSLSMGFSSTLIPNPEIPEAYALKGWYDSKGRNANFITLKQEPGMGGQS 436
Query: 481 -ADIRK------TVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCN 533
A + K T+++ + E LG EK D+ +V A I ++K DNF Y AC + CN
Sbjct: 437 AASLTKFIAQRITIARAQAENLGRSEKGDFFSVKAAISFLKVDNFAYPAC----SNENCN 492
Query: 534 KKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDL 593
KKV+ DG W C++CD + ++RYIL I D T W+T F + A++++G+ A L
Sbjct: 493 KKVLEQPDGTWRCEKCDTNNARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTL 552
Query: 594 YSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRF 653
SLK D N+ F ++ ++ +Y F+++ +E+T++D+ R++ TV NY +E +
Sbjct: 553 MSLKEEDPNE--FTKITQSIQMNEYDFRIRAREDTYNDQSRIRYTVANLHSLNYRAEADY 610
Query: 654 ILDLMDK 660
+ D + K
Sbjct: 611 LADELSK 617
Score = 41 (19.5 bits), Expect = 2.5e-77, Sum P(2) = 2.5e-77
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 29 MVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRL 63
+++SDG + +L Q S LQ G ++R+
Sbjct: 48 IMISDGIYHMKALLRNQAASKFQSMELQRGDIIRV 82
>CGD|CAL0004564 [details] [associations]
symbol:RFA1 species:5476 "Candida albicans" [GO:0000781
"chromosome, telomeric region" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000794 "condensed nuclear chromosome"
evidence=IEA] [GO:0005662 "DNA replication factor A complex"
evidence=IEA] [GO:0000722 "telomere maintenance via recombination"
evidence=IEA] [GO:0045184 "establishment of protein localization"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0006268 "DNA unwinding involved in replication" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0007131
"reciprocal meiotic recombination" evidence=IEA] [GO:0030491
"heteroduplex formation" evidence=IEA] [GO:0007004 "telomere
maintenance via telomerase" evidence=IEA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] InterPro:IPR004365 InterPro:IPR004591
InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057 CGD:CAL0004564
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AACQ01000031
EMBL:AACQ01000030 InterPro:IPR013955 Pfam:PF08646 eggNOG:COG1599
KO:K07466 TIGRFAMs:TIGR00617 HOGENOM:HOG000162322
RefSeq:XP_719539.1 RefSeq:XP_719663.1 ProteinModelPortal:Q5ACX4
STRING:Q5ACX4 GeneID:3638744 GeneID:3638823 KEGG:cal:CaO19.2093
KEGG:cal:CaO19.9640 Uniprot:Q5ACX4
Length = 624
Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
Identities = 153/487 (31%), Positives = 275/487 (56%)
Query: 192 TPQAPYMQSPSMYANR--GLVGKSEVPS----RIIPIAALNPYMGKWTIKARVTAKGELR 245
TP P QS + + + G V P+ ++ PI ++PY WTIKARV+ KG+LR
Sbjct: 150 TP--PLAQSTNSFKSEVGGGVAAQSKPAGTHRKVSPIETISPYQNNWTIKARVSYKGDLR 207
Query: 246 HYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNF 305
++N +G+GKVF F+LLD + EI+ + FN A++ + +E GK+Y +S+ + A+K F
Sbjct: 208 TWSNSKGEGKVFGFNLLD-ESDEIKASAFNETAERAHKLLEEGKVYYISKARVAAARKKF 266
Query: 306 NHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISP 365
N L + E+ D + + C+ D++ +P+ F+F ++ V+ +E N+++D++G + + P
Sbjct: 267 NTLSHPYELTFDKDTEITECF-DESDVPKLNFNFVKLDQVQNLEANAIIDVLGALKTVFP 325
Query: 366 TASLMRKN-GTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKA 424
+ K+ G +R + + D +G +EL LW N D + + G ++AVK
Sbjct: 326 PFQITAKSTGKVFDRRNILVVDETGFGIELGLWNNTATDFNI------EEGT--VVAVKG 377
Query: 425 GRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADI- 483
+VSD++G+ + + P PE+ +LK W++ G + S+ D+ G I
Sbjct: 378 CKVSDYDGRTLSLTQAGSIIPNPGTPESFKLKGWYDNIGIHESFKSLKIDNAGSGGDKIS 437
Query: 484 -RKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGD----RP---CNKK 535
R +++Q +E G+ EKPD+ ++ A++ + K +NF Y ACP ++ + RP CNKK
Sbjct: 438 QRISINQALEEHSGSTEKPDYFSIKASVTFCKPENFAYPACPNLVQNADATRPAQVCNKK 497
Query: 536 -VMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLY 594
V + DG W C+RC ++ E +RY+L + D TG WVT F + AE+++G+ A +L
Sbjct: 498 LVFQDNDGTWRCERCAKTYEEPTWRYVLSCSVTDSTGHMWVTLFNDQAEKLLGIDATELV 557
Query: 595 SLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFI 654
K +Q E +++ N F ++ ++K K+ET++DE + + + +Y+SE++F+
Sbjct: 558 KKK--EQKSEVANQIMNNTLFKEFSLRVKAKQETYNDELKTRYSAAGINELDYASESQFL 615
Query: 655 LDLMDKL 661
+ +D+L
Sbjct: 616 IKKLDQL 622
>UNIPROTKB|I3LSJ9 [details] [associations]
symbol:I3LSJ9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006260 "DNA replication" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR013955 Pfam:PF08646 GeneTree:ENSGT00390000012403
TIGRFAMs:TIGR00617 Ensembl:ENSSSCT00000030272 OMA:ETTIEEC
Uniprot:I3LSJ9
Length = 550
Score = 480 (174.0 bits), Expect = 7.9e-63, Sum P(3) = 7.9e-63
Identities = 109/313 (34%), Positives = 180/313 (57%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
++++PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D + GEIR T FN
Sbjct: 177 AKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNE 235
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
D+F+ ++ +Y S+G+LK A K F + ND E+ + V C ED +P Q
Sbjct: 236 QVDKFFPLIDV--VYYFSKGTLKIANKQFTAVKNDYEMTFSNETSVMPC-EDGHHLPTVQ 292
Query: 337 FHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F I D+E +S+VD+IG+ +Y T ++ E KR ++L DMSG+ V T
Sbjct: 293 FDFTGIADLENKSKDSLVDIIGICKNYEDVTKITVKSTNREVSKRNIYLMDMSGKVVNAT 352
Query: 396 LWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
LWG + DG R P++A+K RVS + +S++ + + PD PEA++
Sbjct: 353 LWGEDADKFDGSRQ---------PVMAIKGARVSXS----LSILSSSTVIVNPDIPEAYK 399
Query: 455 LKEWFEKEGKNTQSVSISRDSLSVGRADI----RKTVSQIKDEGLGTKEKPDWITVSATI 510
L+ W + G+ ++++++ D+ +V ++ R SQ + +G+ +KPD+ + AT+
Sbjct: 400 LRGWLGQRGR-LRALTLASDTGAVHNINLSWAERCLYSQTR---IGSGKKPDYFSAVATV 455
Query: 511 VYIKCDNFCYTAC 523
VY++ +N C C
Sbjct: 456 VYLRKEN-CLYRC 467
Score = 131 (51.2 bits), Expect = 7.9e-63, Sum P(3) = 7.9e-63
Identities = 33/92 (35%), Positives = 47/92 (51%)
Query: 544 WHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQND 603
+ C++CD YR IL I D WVT FQE AE I+G S L LK
Sbjct: 465 YRCEKCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQSTAYLGELK------ 518
Query: 604 EKFGEVVRNA-----TFTKYLFKLKVKEETFS 630
EK G V ++ +F+ + F+++VK ET++
Sbjct: 519 EKVGHVFDHSLFSHISFSSFSFRIRVKLETYN 550
Score = 77 (32.2 bits), Expect = 7.9e-63, Sum P(3) = 7.9e-63
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 2 PVLQVMDLKLVVSKXXXXXXXXXXRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQV++++ + + R+R+++SDG + MLATQ N LV L +
Sbjct: 24 PILQVINIRPITT------GNNPPRYRLLMSDGLNTLSSFMLATQLNPLVEEERLSSNCI 77
Query: 61 VRLTKFTCNVIQN 73
++ +F N +++
Sbjct: 78 CQINRFIVNTLKD 90
>WB|WBGene00017546 [details] [associations]
symbol:rpa-1 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0051096 "positive regulation of helicase activity"
evidence=IDA] [GO:0019899 "enzyme binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005662 "DNA
replication factor A complex" evidence=ISS] InterPro:IPR004365
InterPro:IPR004591 Pfam:PF01336 GO:GO:0009792 GO:GO:0006898
GO:GO:0005654 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0005662
EMBL:FO080212 GO:GO:0051096 InterPro:IPR013955 Pfam:PF08646
PIR:T34219 RefSeq:NP_495606.1 ProteinModelPortal:Q19537 SMR:Q19537
DIP:DIP-26609N IntAct:Q19537 MINT:MINT-1119512 STRING:Q19537
PaxDb:Q19537 EnsemblMetazoa:F18A1.5 GeneID:174238
KEGG:cel:CELE_F18A1.5 CTD:174238 WormBase:F18A1.5 eggNOG:COG1599
GeneTree:ENSGT00390000012403 HOGENOM:HOG000154096 InParanoid:Q19537
KO:K07466 OMA:IKARVSY NextBio:883159 TIGRFAMs:TIGR00617
Uniprot:Q19537
Length = 655
Score = 499 (180.7 bits), Expect = 7.1e-49, Sum P(2) = 7.1e-49
Identities = 138/490 (28%), Positives = 244/490 (49%)
Query: 177 PRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKA 236
P+ EF + N A P+A ++ A R S ++PIA + PY+ + I
Sbjct: 184 PKREFGEEASYNRAAAPEATRARAVPPPARRTA---SNTERGVMPIAMVTPYVSNFKIHG 240
Query: 237 RVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG 296
V+ K E+R + + + KVF+F++ DS+G IR T FN VA+ Y + Y +S G
Sbjct: 241 MVSRKEEIRTFPAK--NTKVFNFEITDSNGDTIRCTAFNEVAESLYTTITENLSYYLSGG 298
Query: 297 SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDL 356
S+K A K FN+ +D EI L S+++ E A+ P+ + ++ G ++D+
Sbjct: 299 SVKQANKKFNNTGHDYEITLRSDSIIEAGGELLAA-PKLILKRVKLGEIAGYAGQ-LIDV 356
Query: 357 IGVVSYISPTAS-LMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSG 415
+ VV + P A+ K G KR + L D SG V LTLWG D+ + + D
Sbjct: 357 LVVVEKMDPEATEFTSKAGKSLIKREMELIDESGALVRLTLWG----DEATKA--LVDDY 410
Query: 416 VFPILAVKAGRVSDFNGKV-VGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRD 474
V ++A K +FNG +GT S T++ P+ L +W+ K T V +
Sbjct: 411 VQKVIAFKGVIPREFNGGFSLGTGSATRIISVPEIAGVSELYDWYANV-KPTTEVKMMSQ 469
Query: 475 SLSVGRADIRKTVSQIKDEGLGT-KEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCN 533
+ G + +T++ +++ G +K D+ TV A I + N Y C C
Sbjct: 470 AAG-GSNEAPRTIAGLQEMQFGKDSDKGDYATVKAMITRVNPTNALYRGC----ASEGCQ 524
Query: 534 KKVMN-NGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKD 592
KK++ NGD R C++C++++ + + Y++QF++ D TG +VTAF + A +I+G SA +
Sbjct: 525 KKLVGENGDYR--CEKCNKNMNKFKWLYMMQFELSDETGQVYVTAFGDSAAKIVGKSAAE 582
Query: 593 LYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETR 652
L L D++ +++ + F +++L+ K +++++E R K TV + N
Sbjct: 583 LGELH--DESPDEYNAIFERLQFVPKMWRLRCKMDSYNEEVRQKMTVYGVDDVNQDKYIE 640
Query: 653 FILDLMDKLK 662
+ ++++++
Sbjct: 641 NLKQMIEQMQ 650
Score = 37 (18.1 bits), Expect = 7.1e-49, Sum P(2) = 7.1e-49
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 95 PVPAQRPSSNEQPG 108
P PA+R +SN + G
Sbjct: 209 PPPARRTASNTERG 222
>UNIPROTKB|Q19537 [details] [associations]
symbol:rpa-1 "Probable replication factor A 73 kDa subunit"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004365 InterPro:IPR004591 Pfam:PF01336
GO:GO:0009792 GO:GO:0006898 GO:GO:0005654 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0005662 EMBL:FO080212 GO:GO:0051096
InterPro:IPR013955 Pfam:PF08646 PIR:T34219 RefSeq:NP_495606.1
ProteinModelPortal:Q19537 SMR:Q19537 DIP:DIP-26609N IntAct:Q19537
MINT:MINT-1119512 STRING:Q19537 PaxDb:Q19537 EnsemblMetazoa:F18A1.5
GeneID:174238 KEGG:cel:CELE_F18A1.5 CTD:174238 WormBase:F18A1.5
eggNOG:COG1599 GeneTree:ENSGT00390000012403 HOGENOM:HOG000154096
InParanoid:Q19537 KO:K07466 OMA:IKARVSY NextBio:883159
TIGRFAMs:TIGR00617 Uniprot:Q19537
Length = 655
Score = 499 (180.7 bits), Expect = 7.1e-49, Sum P(2) = 7.1e-49
Identities = 138/490 (28%), Positives = 244/490 (49%)
Query: 177 PRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKA 236
P+ EF + N A P+A ++ A R S ++PIA + PY+ + I
Sbjct: 184 PKREFGEEASYNRAAAPEATRARAVPPPARRTA---SNTERGVMPIAMVTPYVSNFKIHG 240
Query: 237 RVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG 296
V+ K E+R + + + KVF+F++ DS+G IR T FN VA+ Y + Y +S G
Sbjct: 241 MVSRKEEIRTFPAK--NTKVFNFEITDSNGDTIRCTAFNEVAESLYTTITENLSYYLSGG 298
Query: 297 SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDL 356
S+K A K FN+ +D EI L S+++ E A+ P+ + ++ G ++D+
Sbjct: 299 SVKQANKKFNNTGHDYEITLRSDSIIEAGGELLAA-PKLILKRVKLGEIAGYAGQ-LIDV 356
Query: 357 IGVVSYISPTAS-LMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSG 415
+ VV + P A+ K G KR + L D SG V LTLWG D+ + + D
Sbjct: 357 LVVVEKMDPEATEFTSKAGKSLIKREMELIDESGALVRLTLWG----DEATKA--LVDDY 410
Query: 416 VFPILAVKAGRVSDFNGKV-VGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRD 474
V ++A K +FNG +GT S T++ P+ L +W+ K T V +
Sbjct: 411 VQKVIAFKGVIPREFNGGFSLGTGSATRIISVPEIAGVSELYDWYANV-KPTTEVKMMSQ 469
Query: 475 SLSVGRADIRKTVSQIKDEGLGT-KEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCN 533
+ G + +T++ +++ G +K D+ TV A I + N Y C C
Sbjct: 470 AAG-GSNEAPRTIAGLQEMQFGKDSDKGDYATVKAMITRVNPTNALYRGC----ASEGCQ 524
Query: 534 KKVMN-NGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKD 592
KK++ NGD R C++C++++ + + Y++QF++ D TG +VTAF + A +I+G SA +
Sbjct: 525 KKLVGENGDYR--CEKCNKNMNKFKWLYMMQFELSDETGQVYVTAFGDSAAKIVGKSAAE 582
Query: 593 LYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETR 652
L L D++ +++ + F +++L+ K +++++E R K TV + N
Sbjct: 583 LGELH--DESPDEYNAIFERLQFVPKMWRLRCKMDSYNEEVRQKMTVYGVDDVNQDKYIE 640
Query: 653 FILDLMDKLK 662
+ ++++++
Sbjct: 641 NLKQMIEQMQ 650
Score = 37 (18.1 bits), Expect = 7.1e-49, Sum P(2) = 7.1e-49
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 95 PVPAQRPSSNEQPG 108
P PA+R +SN + G
Sbjct: 209 PPPARRTASNTERG 222
>GENEDB_PFALCIPARUM|PFD0470c [details] [associations]
symbol:PFD0470c "replication factor a protein,
putative" species:5833 "Plasmodium falciparum" [GO:0005662 "DNA
replication factor A complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006261 "DNA-dependent DNA
replication" evidence=ISS] InterPro:IPR004365 Pfam:PF01336
GO:GO:0003676 GO:GO:0006261 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:AL844503 GO:GO:0005662 InterPro:IPR013955
Pfam:PF08646 KO:K07466 RefSeq:XP_001351411.1 HSSP:P27694
ProteinModelPortal:Q9U0J0 IntAct:Q9U0J0 MINT:MINT-1572664
PRIDE:Q9U0J0 EnsemblProtists:PFD0470c:mRNA GeneID:812392
KEGG:pfa:PFD0470c EuPathDB:PlasmoDB:PF3D7_0409600
ProtClustDB:CLSZ2500502 Uniprot:Q9U0J0
Length = 1145
Score = 492 (178.3 bits), Expect = 8.7e-44, P = 8.7e-44
Identities = 133/447 (29%), Positives = 234/447 (52%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
++ I L+ Y KW IKARV +K +R Y + +GKVF+ +L D DG EI+ F
Sbjct: 683 LMQINKLSQYSSKWIIKARVQSKDNIRRYTSGSKEGKVFNIELCDEDG-EIKANFFGKAV 741
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D+++ +E GKIY +S+G +K A K FN L++D EI LD S++++ E++ +IP+ ++
Sbjct: 742 DKWFDFIEVGKIYKISKGMIKVANKKFNTLNHDYEITLDENSLIEILDEENENIPKYNYN 801
Query: 339 FRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLW 397
F I++++ M S VD+I VV +Y ++K G KR + L D S ++++TLW
Sbjct: 802 FISIDNIKNMNTGSFVDIIAVVLNYQEKMQIFVKKTGQYKDKRDVTLIDESFDTIQVTLW 861
Query: 398 G-NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPD-FPEAHRL 455
N D + L+ C I+ K ++ ++ GK + + + T++ I PD +A+ L
Sbjct: 862 EKNATIIDEMNLRDNC------IVCFKYLKIGEWQGKKLESHARTKIEINPDNIEKAYIL 915
Query: 456 KEWFEKEGKNT-QSVSISRDSLSVGRA----DIRKTVSQIKDEGLGTKEKPDWITVSATI 510
K W+ K S+++S + +++ +I+K V+ + +E L K T I
Sbjct: 916 KNWWIHNKKMICNSINLSSNYINIETQKTIQEIKKNVNLVNEEALSGKGI--MFTTYGFI 973
Query: 511 VYIKCDNFCYTACPIMIGDRPCNKKVMNNG--DGRW-----------HCDRCDQSVVECD 557
I + Y+ACP CNKK+++N D + +C +C+++ +
Sbjct: 974 DQIYNNMPVYSACP------DCNKKMISNSVDDNEYEPSSNLLEETMYCAKCNKNNIPV- 1026
Query: 558 YRYILQFQIQDHTGLTWVTAFQECAEEIM-GMSAKDLYSLK--YVDQ-NDEKFGEVVRNA 613
Y Y + +I D T +AF CA+ IM G+SA++ L+ Y+ Q N E F +++
Sbjct: 1027 YNYYINLKITDSTDSIRASAFANCAKIIMNGLSAEEYMKLRQEYIMQENIENF-DIIEKI 1085
Query: 614 TFTKYLFKLKVKEETFSDEQRVKSTVV 640
++ F++KV + DE + T++
Sbjct: 1086 KLNEFFFRIKVYMTSHMDELKKNYTII 1112
>UNIPROTKB|Q9U0J0 [details] [associations]
symbol:PFD0470c "Replication factor a protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005662 "DNA
replication factor A complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006261 "DNA-dependent DNA
replication" evidence=ISS] InterPro:IPR004365 Pfam:PF01336
GO:GO:0003676 GO:GO:0006261 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:AL844503 GO:GO:0005662 InterPro:IPR013955
Pfam:PF08646 KO:K07466 RefSeq:XP_001351411.1 HSSP:P27694
ProteinModelPortal:Q9U0J0 IntAct:Q9U0J0 MINT:MINT-1572664
PRIDE:Q9U0J0 EnsemblProtists:PFD0470c:mRNA GeneID:812392
KEGG:pfa:PFD0470c EuPathDB:PlasmoDB:PF3D7_0409600
ProtClustDB:CLSZ2500502 Uniprot:Q9U0J0
Length = 1145
Score = 492 (178.3 bits), Expect = 8.7e-44, P = 8.7e-44
Identities = 133/447 (29%), Positives = 234/447 (52%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
++ I L+ Y KW IKARV +K +R Y + +GKVF+ +L D DG EI+ F
Sbjct: 683 LMQINKLSQYSSKWIIKARVQSKDNIRRYTSGSKEGKVFNIELCDEDG-EIKANFFGKAV 741
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D+++ +E GKIY +S+G +K A K FN L++D EI LD S++++ E++ +IP+ ++
Sbjct: 742 DKWFDFIEVGKIYKISKGMIKVANKKFNTLNHDYEITLDENSLIEILDEENENIPKYNYN 801
Query: 339 FRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLW 397
F I++++ M S VD+I VV +Y ++K G KR + L D S ++++TLW
Sbjct: 802 FISIDNIKNMNTGSFVDIIAVVLNYQEKMQIFVKKTGQYKDKRDVTLIDESFDTIQVTLW 861
Query: 398 G-NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPD-FPEAHRL 455
N D + L+ C I+ K ++ ++ GK + + + T++ I PD +A+ L
Sbjct: 862 EKNATIIDEMNLRDNC------IVCFKYLKIGEWQGKKLESHARTKIEINPDNIEKAYIL 915
Query: 456 KEWFEKEGKNT-QSVSISRDSLSVGRA----DIRKTVSQIKDEGLGTKEKPDWITVSATI 510
K W+ K S+++S + +++ +I+K V+ + +E L K T I
Sbjct: 916 KNWWIHNKKMICNSINLSSNYINIETQKTIQEIKKNVNLVNEEALSGKGI--MFTTYGFI 973
Query: 511 VYIKCDNFCYTACPIMIGDRPCNKKVMNNG--DGRW-----------HCDRCDQSVVECD 557
I + Y+ACP CNKK+++N D + +C +C+++ +
Sbjct: 974 DQIYNNMPVYSACP------DCNKKMISNSVDDNEYEPSSNLLEETMYCAKCNKNNIPV- 1026
Query: 558 YRYILQFQIQDHTGLTWVTAFQECAEEIM-GMSAKDLYSLK--YVDQ-NDEKFGEVVRNA 613
Y Y + +I D T +AF CA+ IM G+SA++ L+ Y+ Q N E F +++
Sbjct: 1027 YNYYINLKITDSTDSIRASAFANCAKIIMNGLSAEEYMKLRQEYIMQENIENF-DIIEKI 1085
Query: 614 TFTKYLFKLKVKEETFSDEQRVKSTVV 640
++ F++KV + DE + T++
Sbjct: 1086 KLNEFFFRIKVYMTSHMDELKKNYTII 1112
>DICTYBASE|DDB_G0289513 [details] [associations]
symbol:rfa1 "putative replication factor A
DNA-binding subunit" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR004365 Pfam:PF01336
dictyBase:DDB_G0289513 GenomeReviews:CM000154_GR GO:GO:0003676
EMBL:AAFI02000141 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR013955 Pfam:PF08646 eggNOG:COG1599
KO:K07466 RefSeq:XP_636195.1 ProteinModelPortal:Q54HE3 PRIDE:Q54HE3
EnsemblProtists:DDB0233023 GeneID:8627182 KEGG:ddi:DDB_G0289513
InParanoid:Q54HE3 OMA:SINFPKR Uniprot:Q54HE3
Length = 679
Score = 299 (110.3 bits), Expect = 4.7e-23, P = 4.7e-23
Identities = 115/483 (23%), Positives = 211/483 (43%)
Query: 219 IIPIAALNPYMG-KWTIKARVTAKGELRHYNN-QRGDGKVFHFDLLDSDGGEIRVTCF-- 274
I I ++ P M ++TI+A V K L+ +N G+GK+F +L+DS G EI+ CF
Sbjct: 211 ITDIESIAPGMNVQFTIRAMVRNKQPLKSWNKGANGEGKLFSMELVDSTG-EIKCACFSD 269
Query: 275 ----NAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDA 330
N + Y E GK+Y + R +K A K +N L + E+ ++ S V + +
Sbjct: 270 SSNPNNFINALYDCFENGKVYFIQRFFVKSANKLYNTLSHQSELSINSESRVMISPDQTQ 329
Query: 331 SIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGR 390
P ++F+ I D+E +E N VD+IG ++ I P A+L K G E K + + D +
Sbjct: 330 FTPH--YNFKKIADIENLEKNDTVDVIGAITNIDPIANLTSKQGKEFTKFGITIADDTNA 387
Query: 391 SVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVG-TISTTQLFIEPDF 449
S+ + W N+ + G I+A+K +VSDF+G+ + + ++ +
Sbjct: 388 SINVVFW----NEKATEVAPQVKVG--DIIAMKGVKVSDFSGRTLSYSFGSSFGLNDEQL 441
Query: 450 PEAHRLKEWFEKEGKNT-QSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSA 508
E L+ + N+ QS++I+ + + I+ G+ P +I+
Sbjct: 442 QETSNLRAHLQNFDVNSLQSLTIASSYTQSSYEQVNLPIFLIRTISEGS---PLFISDPK 498
Query: 509 TI--VYIKCDNFCYTACPI-MIGDRPCNKKVMNNGDGRWH-CDRCDQSVVE--C------ 556
T +Y F P+ G+ ++ + + ++ C +C +S E C
Sbjct: 499 TNKKLYRTIGQF-QRVVPLSQAGEMDKGDEISSKMEWKYKACKKCKKSCPEGSCPQCGSD 557
Query: 557 --DYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNAT 614
+Y Y + ++ D V + + + G SA +LY + N E+ E+
Sbjct: 558 DWEYAYRMSLKLSDGDDAISVEVMGKTGDRLFGKSAAELYQM-----NQEQINEIFNTVL 612
Query: 615 FTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSGDSTSFALKAE 674
Y+ L S+ Q T + Y++++ + D +KL SG + + + +
Sbjct: 613 SNNYVVSLAPSSYMGSNGQ----TYNRFNVYDFAN----LYDTPNKLVSGPNPNAPNQFQ 664
Query: 675 NII 677
N I
Sbjct: 665 NYI 667
>TAIR|locus:2011521 [details] [associations]
symbol:AT1G52950 "AT1G52950" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0009506 "plasmodesma" evidence=IDA] EMBL:CP002684
GO:GO:0009506 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AC019018 InterPro:IPR013955 Pfam:PF08646 KO:K07466
InterPro:IPR003871 Pfam:PF02721 IPI:IPI00548251 RefSeq:NP_175703.1
UniGene:At.52167 ProteinModelPortal:Q9C926 SMR:Q9C926
EnsemblPlants:AT1G52950.1 GeneID:841728 KEGG:ath:AT1G52950
TAIR:At1g52950 HOGENOM:HOG000152224 InParanoid:Q9C926 OMA:DGNKIQA
PhylomeDB:Q9C926 ArrayExpress:Q9C926 Genevestigator:Q9C926
Uniprot:Q9C926
Length = 566
Score = 198 (74.8 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 99/443 (22%), Positives = 175/443 (39%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQF 281
I L P+ W I+ ++ HY +G G + L D DG +I+ +
Sbjct: 10 IKNLKPFKTSWCIQVKILHAWN--HYT--KGSGMSYEMMLADEDGNKIQAGIKKEHLLKL 65
Query: 282 YHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRP 341
V+ G ++ S+ A + + I + ++ I +F
Sbjct: 66 QRYVKIGHWTIIEEFSVTKASGLYRSTTHPYRINIQSSTRFSNSPTISDEIWLDLVNF-- 123
Query: 342 INDV-EG-MENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGN 399
NDV G ++ N +V++IG + + L+ G T+K LRD + +LWG
Sbjct: 124 -NDVLSGTLDQNKLVNVIGQLVNVGEI-QLLDVQGKPTKKIDFQLRDTDDNRLPCSLWGK 181
Query: 400 FCNDDGLRLQHMCDSGVFPILA--VKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKE 457
F D ++ G+ L K G + + +++FI P E K
Sbjct: 182 FA-DQIHKVSKESVGGIVICLIRWAKLGHYKEIRS-ISNAFDASEVFINPILTEVEEFKN 239
Query: 458 WFEKEGKNTQSVSISR--DSLSV----GRADIRKTVSQIKDEGLGTKEKPDWITVSATIV 511
+G + L V + RKT++++K EK + + +I+
Sbjct: 240 LLPSDGLALTIMEPKPRFQPLRVREERSKQFERKTIAELKASF--EVEK---VKIICSIL 294
Query: 512 YIKCDNFCYTACPIMIGDRPC-NKKVMNNGDGR--WHCDRCDQSVVECDYRYILQFQIQD 568
I D Y I + +KK +++G + + CD+C V + RY L I D
Sbjct: 295 SIDLDYSWYYYAHIKCNKKVFKSKKTLSSGAKKIIYRCDKCATDVTSIEARYWLHLDIMD 354
Query: 569 HTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEK--FGEVVRNATFTKYLFKLKVKE 626
+TG + + F E I+G A +L + +Q DE +VV+N Y F + V++
Sbjct: 355 NTGESKLMLFDSFVEPIIGCPATELLDVTN-EQIDEPQPLPDVVKNIIGKTYQFLVCVEQ 413
Query: 627 ETFS---DEQRVKSTVVKAERYN 646
+ S DE +V + V+ ++ N
Sbjct: 414 DNISRGNDEYKV-AEVLTSQNIN 435
>TAIR|locus:2047092 [details] [associations]
symbol:GRP2B "glycine-rich protein 2B" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009409 "response
to cold" evidence=IEP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009790 "embryo
development" evidence=IMP] [GO:0010154 "fruit development"
evidence=IMP] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 Prosite:PS00352
GO:GO:0005829 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0009409 GO:GO:0008270 GO:GO:0003723 GO:GO:0009790
GO:GO:0010154 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000186262
InterPro:IPR019844 EMBL:AC006264 eggNOG:COG1278
ProtClustDB:CLSN2683565 EMBL:U39072 EMBL:AY057693 EMBL:BT021142
IPI:IPI00516457 PIR:F84596 RefSeq:NP_179702.1 UniGene:At.1680
ProteinModelPortal:Q38896 SMR:Q38896 PaxDb:Q38896 PRIDE:Q38896
EnsemblPlants:AT2G21060.1 GeneID:816641 KEGG:ath:AT2G21060
TAIR:At2g21060 InParanoid:Q38896 OMA:CFKCGEP PhylomeDB:Q38896
Genevestigator:Q38896 GermOnline:AT2G21060 Uniprot:Q38896
Length = 201
Score = 152 (58.6 bits), Expect = 9.9e-10, P = 9.9e-10
Identities = 36/116 (31%), Positives = 43/116 (37%)
Query: 688 GNIGSRQTAPVVANYVGNNSNAGAASGLLANQMGQYGNQYSGSRLPAAGTSAARQSCSSC 747
GN G ++ + G G G G YG Y G G SC C
Sbjct: 88 GNSGGGGSSGGRGGFGGGGGRGGGRGG------GSYGGGYGGRGSGGRGGGGGDNSCFKC 141
Query: 748 GAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPS 803
G GH + C G GGG S G G CY C ++GH+ARDC S
Sbjct: 142 GEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDCTS 197
>WB|WBGene00019537 [details] [associations]
symbol:K08D12.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0046872 GO:GO:0008270 GO:GO:0040011
GO:GO:0000003 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 OMA:FQFMSSS
GeneTree:ENSGT00510000047065 EMBL:FO081610 GeneID:176979
KEGG:cel:CELE_K08D12.3 UCSC:K08D12.3a.1 CTD:176979 NextBio:894830
RefSeq:NP_741323.1 ProteinModelPortal:Q966I7 SMR:Q966I7
STRING:Q966I7 PRIDE:Q966I7 EnsemblMetazoa:K08D12.3a.1
EnsemblMetazoa:K08D12.3a.2 WormBase:K08D12.3a InParanoid:Q966I7
ArrayExpress:Q966I7 Uniprot:Q966I7
Length = 151
Score = 123 (48.4 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 30/106 (28%), Positives = 42/106 (39%)
Query: 704 GNNSNAGAASGLLANQMGQYGNQY--SGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIM 761
G G ++ + G + GS G SC +CG GH S +CPS
Sbjct: 27 GRRGGGGGSTCYNCQETGHFSRDCPKGGSGGGQRGGGGGGGSCYNCGGRGHYSRDCPSAR 86
Query: 762 SGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPSLNAA 807
S G GGY G +CY C ++GH +R+C +A
Sbjct: 87 SEGGS---GGYGGRGGEGRSFG-GQKCYNCGRSGHISRECTESGSA 128
Score = 114 (45.2 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 24/61 (39%), Positives = 31/61 (50%)
Query: 742 QSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDC 801
++C C GH S NCP+ S G+ GGG S CY C +TGH++RDC
Sbjct: 4 RNCYKCQQPGHISRNCPNGESDGGRRGGGG-------------GSTCYNCQETGHFSRDC 50
Query: 802 P 802
P
Sbjct: 51 P 51
>FB|FBgn0034802 [details] [associations]
symbol:CG3800 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=ISS;NAS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
EMBL:AE013599 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756 KO:K09250
GeneTree:ENSGT00510000047065 OMA:QCYNCGE EMBL:AY075371
EMBL:AY118596 RefSeq:NP_001188992.1 RefSeq:NP_611739.1
UniGene:Dm.5513 ProteinModelPortal:Q8T8R1 SMR:Q8T8R1
MINT:MINT-943666 STRING:Q8T8R1 PaxDb:Q8T8R1 PRIDE:Q8T8R1
EnsemblMetazoa:FBtr0071994 EnsemblMetazoa:FBtr0303464 GeneID:37646
KEGG:dme:Dmel_CG3800 UCSC:CG3800-RA FlyBase:FBgn0034802
InParanoid:Q8T8R1 OrthoDB:EOG40RXZ0 PhylomeDB:Q8T8R1
GenomeRNAi:37646 NextBio:804714 Bgee:Q8T8R1 Uniprot:Q8T8R1
Length = 165
Score = 122 (48.0 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/101 (29%), Positives = 43/101 (42%)
Query: 710 GAASGLLANQMGQYGNQYSGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSG 769
G G + G G G+ G R+ C C GH + CP + +G
Sbjct: 25 GGGPGGVGGGGGGGGGGMRGN--DGGGMRRNREKCYKCNQFGHFARACPEEAERCYRCNG 82
Query: 770 GGYANSFSSGAGIATSSECYKCHKTGHWARDCP-SLNAAPP 809
G+ S A + CY+C+KTGHW R+CP ++N P
Sbjct: 83 IGH---ISKDCTQADNPTCYRCNKTGHWVRNCPEAVNERGP 120
Score = 108 (43.1 bits), Expect = 0.00090, P = 0.00090
Identities = 24/68 (35%), Positives = 34/68 (50%)
Query: 743 SCSSCGAVGHSSMNC-------PSIMSGPGQSSGGGYANSFSSGAGIATSSE-CYKCHKT 794
+C C GH + +C P + G G GGG + G G+ + E CYKC++
Sbjct: 6 TCYKCNRPGHFARDCSLGGGGGPGGVGGGGGGGGGGMRGN--DGGGMRRNREKCYKCNQF 63
Query: 795 GHWARDCP 802
GH+AR CP
Sbjct: 64 GHFARACP 71
>TAIR|locus:1005716636 [details] [associations]
symbol:AT2G05642 "AT2G05642" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] EMBL:CP002685 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR013955 Pfam:PF08646 IPI:IPI00531803
RefSeq:NP_850486.2 UniGene:At.47091 ProteinModelPortal:F4IHC4
EnsemblPlants:AT2G05642.1 GeneID:819430 KEGG:ath:AT2G05642
OMA:ITEFKES InterPro:IPR003871 Pfam:PF02721 Uniprot:F4IHC4
Length = 532
Score = 99 (39.9 bits), Expect = 6.0e-06, Sum P(3) = 6.0e-06
Identities = 64/288 (22%), Positives = 105/288 (36%)
Query: 440 TTQLFIEPDFPEAHRLKEWFEKE---GKNTQSVSISRDSLSVGRADI----RKTVSQIKD 492
+T+LFI E KE K T S S S + +KT++ I
Sbjct: 206 STKLFINSSIAEITEFKESLAKSDCLALTTISTITSSSSSKHSKPSFSLRDQKTIADINS 265
Query: 493 EGLGTKEKPDW-ITVSATIVYIKCDNFCYT-ACPIMIGDRPCNKKVMNNGDGRWHCDRCD 550
G + I YI C N C+ P N + G++ C++CD
Sbjct: 266 GGACNIIASIFSIDTKVPWFYIGC-NICFKKVSPYF------NPETEEIEAGKYECEKCD 318
Query: 551 QSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVV 610
V R+ +Q + DHTG F + +++ SA +L + +K + +
Sbjct: 319 TFVTTTSTRFRVQVTVLDHTGEASFLLFDQDVIKLIHKSAYELLEQQVQFNRSDKIPQEL 378
Query: 611 RNATFTKYLFKLKVKEET-FSDEQ--RVKSTVVKAERYNYSSETRFILDLMDK---LKSG 664
+ +++F ++ + T FS RV K E E ++ D + S
Sbjct: 379 LDLEGRQFVFTIQGSDSTKFSRPSIFRVYELTDKPEIVQKFQENLLQMNTTDPNTHMVSS 438
Query: 665 DSTSFALKAENIIPKPEMTYTGT-GNIGSRQT---APVVANYVGNNSN 708
S S + E P +M T N + Q + ANY +NS+
Sbjct: 439 FSNSTTSETE---PDSDMNIVSTPSNATTNQIDTESSEAANYENSNSS 483
Score = 75 (31.5 bits), Expect = 6.0e-06, Sum P(3) = 6.0e-06
Identities = 22/111 (19%), Positives = 50/111 (45%)
Query: 215 VPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL--DSDGGEIRVT 272
+P I P++ L+ ++ +K R+ L Y+ + + DLL D G I+ +
Sbjct: 1 MPLEITPVSQLHSHLSTCKVKVRIA---RLWAYHKKDRPKDIMGIDLLLVDDKGERIQAS 57
Query: 273 CFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEI-FLDMTSMV 322
+ + +F ++E G Y++ + ++ + +I F+ MT ++
Sbjct: 58 IRSQLLSKFQEKLEEGDCYMIMNFEISDNGGSYRASSHPYKINFMSMTHII 108
Score = 57 (25.1 bits), Expect = 6.0e-06, Sum P(3) = 6.0e-06
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 373 NGTETQKRTLHLRDMSGRSVELTLWGNFCND 403
+G +T+ L LRD+ +++TLW + D
Sbjct: 119 SGRQTKLLNLQLRDLGESVIDVTLWEKWAED 149
>ASPGD|ASPL0000040986 [details] [associations]
symbol:AN9093 species:162425 "Emericella nidulans"
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0045182 "translation regulator
activity" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0042788 "polysomal ribosome" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 EMBL:BN001306 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 HOGENOM:HOG000186262 EnsemblFungi:CADANIAT00009521
OMA:QAGHISR Uniprot:C8VH53
Length = 233
Score = 131 (51.2 bits), Expect = 9.6e-06, P = 9.6e-06
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 733 PAAGTSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSG---GGYANSFSSG-AGIATSSEC 788
P + A C +C GH + NCP+ SG + +G GG+ F G G ++ C
Sbjct: 66 PTLRLNGANGRCYNCSQPGHLARNCPAPASGAPRGTGAPRGGFGGGFRGGYGGYPRAATC 125
Query: 789 YKCHKTGHWARDC 801
YKC H+ARDC
Sbjct: 126 YKCGGPNHFARDC 138
>TAIR|locus:2078526 [details] [associations]
symbol:AT3G42860 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=RCA] [GO:0009640 "photomorphogenesis"
evidence=RCA] [GO:0010212 "response to ionizing radiation"
evidence=RCA] [GO:0010388 "cullin deneddylation" evidence=RCA]
[GO:0016567 "protein ubiquitination" evidence=RCA] [GO:0016571
"histone methylation" evidence=RCA] [GO:0016579 "protein
deubiquitination" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] InterPro:IPR001878
InterPro:IPR010666 Pfam:PF00098 Pfam:PF06839 PROSITE:PS50158
SMART:SM00343 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 eggNOG:COG5082 Gene3D:4.10.60.10
SUPFAM:SSF57756 EMBL:AL138654 EMBL:AY065276 EMBL:AY133785
IPI:IPI00532574 PIR:T47344 RefSeq:NP_189872.1 UniGene:At.28534
ProteinModelPortal:Q9M1L9 SMR:Q9M1L9 EnsemblPlants:AT3G42860.1
GeneID:823332 KEGG:ath:AT3G42860 TAIR:At3g42860
HOGENOM:HOG000006218 InParanoid:Q9M1L9 OMA:CGFFKWC PhylomeDB:Q9M1L9
ProtClustDB:CLSN2684249 ArrayExpress:Q9M1L9 Genevestigator:Q9M1L9
Uniprot:Q9M1L9
Length = 372
Score = 135 (52.6 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 39/113 (34%), Positives = 53/113 (46%)
Query: 695 TAPVVA-NYVGNNSNAGAASGLLANQMGQYGN-QYSGSRLPAAGTSAARQSCSSCGAVGH 752
T PV + + G+ G + Q GN +Y ++ ++ +S C CG GH
Sbjct: 258 TGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSG---ECYKCGKQGH 314
Query: 753 SSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSS--ECYKCHKTGHWARDCPS 803
S +C GQSS F SG +TSS +CYKC K GHW+RDC S
Sbjct: 315 WSRDCT------GQSSN----QQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTS 357
>ASPGD|ASPL0000028407 [details] [associations]
symbol:AN5111 species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0000747 "conjugation with
cellular fusion" evidence=IEA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 EMBL:BN001305 Gene3D:4.10.60.10
SUPFAM:SSF57756 OMA:FQFMSSS EnsemblFungi:CADANIAT00003095
Uniprot:C8VEX3
Length = 171
Score = 120 (47.3 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 32/83 (38%), Positives = 39/83 (46%)
Query: 733 PAAGTS---AARQSCSSCGAVGHSSMNCP---SIMSGPGQSSGGGYANSFSSG-----AG 781
P AG + A Q C CG VGH + NC S G G GG +S G A
Sbjct: 65 PQAGENERPAGGQECYKCGRVGHIARNCSQGGSYGGGFGGGYGGRQQTCYSCGGFGHMAR 124
Query: 782 IATSSE-CYKCHKTGHWARDCPS 803
T + CY C +TGH +RDCP+
Sbjct: 125 DCTQGQKCYNCGETGHVSRDCPT 147
>TAIR|locus:2827810 [details] [associations]
symbol:CSP3 "cold shock domain protein 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEP;IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0009631
"cold acclimation" evidence=IMP] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 Prosite:PS00352
GO:GO:0005634 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0009631 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 InterPro:IPR019844 eggNOG:COG1278
ProtClustDB:CLSN2685328 GO:GO:0032508 HSSP:O54310 EMBL:AB308041
EMBL:AY035133 EMBL:AY062985 IPI:IPI00519047 PIR:T00837
RefSeq:NP_565427.1 UniGene:At.19464 ProteinModelPortal:Q94C69
SMR:Q94C69 PaxDb:Q94C69 PRIDE:Q94C69 EnsemblPlants:AT2G17870.1
GeneID:816297 KEGG:ath:AT2G17870 TAIR:At2g17870 InParanoid:Q94C69
OMA:MEDQSAA PhylomeDB:Q94C69 Genevestigator:Q94C69 Uniprot:Q94C69
Length = 301
Score = 126 (49.4 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 44/156 (28%), Positives = 64/156 (41%)
Query: 650 ETRFILDLMDKLKSGDSTSF--ALKAENIIPKPEMTYTGTGNIGSRQTAPVVANYVGNNS 707
++ + D L G+S + AL ++ E+T G G++ ++ + + GN
Sbjct: 40 QSSIVSDGFRSLTLGESVEYEIALGSDGKTKAIEVTAPGGGSLNKKENSSRGSG--GNCF 97
Query: 708 NAGAASGLLANQM--GQYGNQYSGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMSGPG 765
N G G +A G G + G S C CG VGH + +C SG G
Sbjct: 98 NCGEV-GHMAKDCDGGSGGKSFGGG---GGRRSGGEGECYMCGDVGHFARDCRQ--SGGG 151
Query: 766 QSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDC 801
S GGG G G CY C + GH A+DC
Sbjct: 152 NSGGGG-------GGG----RPCYSCGEVGHLAKDC 176
Score = 39 (18.8 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 253 DGKVFHFDLLDSDGGEIRVTCFNAVADQF 281
DGK + F D G E+ V + V+D F
Sbjct: 20 DGKGYGFITPDDGGEELFVHQSSIVSDGF 48
>WB|WBGene00019858 [details] [associations]
symbol:R03H10.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] InterPro:IPR004365
Pfam:PF01336 GO:GO:0003690 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 eggNOG:COG1599 GeneTree:ENSGT00390000002895
EMBL:FO081265 PIR:T16673 RefSeq:NP_494733.2
ProteinModelPortal:Q9GYL9 SMR:Q9GYL9 EnsemblMetazoa:R03H10.6
GeneID:187558 KEGG:cel:CELE_R03H10.6 UCSC:R03H10.6 CTD:187558
WormBase:R03H10.6 HOGENOM:HOG000152608 NextBio:935694
Uniprot:Q9GYL9
Length = 324
Score = 123 (48.4 bits), Expect = 0.00020, P = 0.00020
Identities = 45/193 (23%), Positives = 81/193 (41%)
Query: 216 PSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFN 275
P+ + PIA LN + + I RVT +++R KVF F++ D +G IR F
Sbjct: 117 PAAVTPIANLNDSVDNFKIHGRVTLM------DDKRRPEKVFSFEITDVNGYTIRCVAFG 170
Query: 276 AVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQ 335
+ + Y + + Y ++ G +K +N + EI LD ++ ++P+
Sbjct: 171 ELGVRLYGSIAKDQSYYLTGGKVKNGHTLYNQTGHAFEIILDEFPTIEPA-PAVLTVPKL 229
Query: 336 QFHFRPINDVEGMEN-NSVVDLIGVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVE 393
+ + +V+ + +D+I V I+ R + + D S +
Sbjct: 230 NLNRVMLCNVQNEQYYRKPIDVIVAVEEINDFLDDYHPIENKPPVLRNMVVIDDSNFRIR 289
Query: 394 LTLWGNFCNDDGL 406
LTLWG D G+
Sbjct: 290 LTLWGYRAMDSGV 302
>CGD|CAL0002417 [details] [associations]
symbol:GIS2 species:5476 "Candida albicans" [GO:0070417
"cellular response to cold" evidence=IMP] [GO:0003676 "nucleic acid
binding" evidence=NAS] [GO:0071470 "cellular response to osmotic
stress" evidence=IMP] [GO:0035690 "cellular response to drug"
evidence=IMP] [GO:0042788 "polysomal ribosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000747 "conjugation with cellular fusion"
evidence=IEA] [GO:0031137 "regulation of conjugation with cellular
fusion" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0045182
"translation regulator activity" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 CGD:CAL0002417
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 GO:GO:0035690
EMBL:AACQ01000100 EMBL:AACQ01000097 GO:GO:0071470 GO:GO:0070417
eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 RefSeq:XP_714599.1
RefSeq:XP_714730.1 ProteinModelPortal:Q59YJ9 STRING:Q59YJ9
GeneID:3643638 GeneID:3643744 KEGG:cal:CaO19.10692
KEGG:cal:CaO19.3182 Uniprot:Q59YJ9
Length = 175
Score = 113 (44.8 bits), Expect = 0.00031, P = 0.00031
Identities = 24/58 (41%), Positives = 31/58 (53%)
Query: 744 CSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDC 801
C +CG GH S NC S P ++ A SF +G A+ + CYKC H+ARDC
Sbjct: 75 CYNCGQFGHISKNCDS---APSSTNN---APSFKRPSGRASGTTCYKCGGPNHFARDC 126
>UNIPROTKB|Q59YJ9 [details] [associations]
symbol:GIS2 "Putative uncharacterized protein GIS2"
species:237561 "Candida albicans SC5314" [GO:0003676 "nucleic acid
binding" evidence=NAS] [GO:0035690 "cellular response to drug"
evidence=IMP] [GO:0070417 "cellular response to cold" evidence=IMP]
[GO:0071470 "cellular response to osmotic stress" evidence=IMP]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
CGD:CAL0002417 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0035690 EMBL:AACQ01000100 EMBL:AACQ01000097 GO:GO:0071470
GO:GO:0070417 eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 RefSeq:XP_714599.1
RefSeq:XP_714730.1 ProteinModelPortal:Q59YJ9 STRING:Q59YJ9
GeneID:3643638 GeneID:3643744 KEGG:cal:CaO19.10692
KEGG:cal:CaO19.3182 Uniprot:Q59YJ9
Length = 175
Score = 113 (44.8 bits), Expect = 0.00031, P = 0.00031
Identities = 24/58 (41%), Positives = 31/58 (53%)
Query: 744 CSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDC 801
C +CG GH S NC S P ++ A SF +G A+ + CYKC H+ARDC
Sbjct: 75 CYNCGQFGHISKNCDS---APSSTNN---APSFKRPSGRASGTTCYKCGGPNHFARDC 126
>TAIR|locus:2121219 [details] [associations]
symbol:GRP2 "AT4G38680" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0009409 "response to cold" evidence=IEP] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=IMP]
[GO:0048316 "seed development" evidence=IMP] [GO:0048443 "stamen
development" evidence=IMP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] [GO:0043457 "regulation of cellular respiration"
evidence=IMP] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009631 "cold
acclimation" evidence=IGI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0009269 "response to desiccation" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 Prosite:PS00352 GO:GO:0005829
GO:GO:0005886 GO:GO:0009737 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0003729 GO:GO:0009631 GO:GO:0048443 GO:GO:0048316
GO:GO:0003690 GO:GO:0003697 GO:GO:0010228 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:4.10.60.10 GO:GO:0009269
EMBL:AL161593 HOGENOM:HOG000186262 InterPro:IPR019844 GO:GO:0043457
eggNOG:COG1278 GO:GO:0032508 EMBL:S47408 EMBL:AL035540
EMBL:AF360202 EMBL:AF385696 EMBL:AY040049 EMBL:AY133591
EMBL:AK318762 IPI:IPI00537614 IPI:IPI00930938 PIR:JQ1061
RefSeq:NP_195580.1 UniGene:At.24348 UniGene:At.75605 HSSP:O54310
ProteinModelPortal:Q41188 SMR:Q41188 STRING:Q41188 PRIDE:Q41188
ProMEX:Q41188 EnsemblPlants:AT4G38680.1 GeneID:830024
KEGG:ath:AT4G38680 TAIR:At4g38680 InParanoid:Q41188 OMA:DCYKCGE
PhylomeDB:Q41188 ProtClustDB:CLSN2683565 Genevestigator:Q41188
Uniprot:Q41188
Length = 203
Score = 116 (45.9 bits), Expect = 0.00032, P = 0.00032
Identities = 37/122 (30%), Positives = 44/122 (36%)
Query: 696 APVVANYVGNNSNA----GAASGLLANQMGQYGNQYSGSRLPAAGTSAARQSCSSCGAVG 751
APV N G +S G G G YG G G C CG G
Sbjct: 80 APVQGNSGGGSSGGRGGFGGGRGGGRGSGGGYGGG-GGGYGGRGGGGRGGSDCYKCGEPG 138
Query: 752 HSSMNCPSIMSG-----PGQSSGGGYANS---FSSGA--GIATSSECYKCHKTGHWARDC 801
H + +C G G GGGY + G G CY C ++GH+ARDC
Sbjct: 139 HMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGESGHFARDC 198
Query: 802 PS 803
S
Sbjct: 199 TS 200
>UNIPROTKB|G4N4A8 [details] [associations]
symbol:MGG_05948 "Zinc knuckle domain-containing protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 EMBL:CM001233 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756 KO:K09250
RefSeq:XP_003711783.1 ProteinModelPortal:G4N4A8
EnsemblFungi:MGG_05948T0 GeneID:2684027 KEGG:mgr:MGG_05948
Uniprot:G4N4A8
Length = 199
Score = 115 (45.5 bits), Expect = 0.00039, P = 0.00039
Identities = 27/58 (46%), Positives = 31/58 (53%)
Query: 744 CSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDC 801
C C GH S +CPS +G G GGG SSGA ECYKC + GH AR+C
Sbjct: 60 CYRCSQPGHISRDCPSGGAGGGGGGGGGQ----SSGA------ECYKCGEVGHIARNC 107
>TAIR|locus:2135139 [details] [associations]
symbol:CSDP1 "cold shock domain protein 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0003690 "double-stranded DNA
binding" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0009414
"response to water deprivation" evidence=IEP] [GO:0009651 "response
to salt stress" evidence=IEP] [GO:0010501 "RNA secondary structure
unwinding" evidence=IDA] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] [GO:0009631 "cold acclimation" evidence=IGI]
[GO:0009165 "nucleotide biosynthetic process" evidence=RCA]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 Prosite:PS00352 GO:GO:0005634
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0009651 GO:GO:0009414 GO:GO:0008270
GO:GO:0009631 GO:GO:0003723 EMBL:AL161588 GO:GO:0003690
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:AL022373
HOGENOM:HOG000186262 KO:K09250 InterPro:IPR019844 GO:GO:0010501
EMBL:AK226815 IPI:IPI00525206 PIR:T05494 RefSeq:NP_195326.1
UniGene:At.23073 HSSP:P15277 ProteinModelPortal:O65639 SMR:O65639
STRING:O65639 PaxDb:O65639 PRIDE:O65639 EnsemblPlants:AT4G36020.1
GeneID:829758 KEGG:ath:AT4G36020 TAIR:At4g36020 eggNOG:COG1278
InParanoid:O65639 OMA:GRACYNC PhylomeDB:O65639
ProtClustDB:CLSN2685328 Genevestigator:O65639 GO:GO:0032508
Uniprot:O65639
Length = 299
Score = 119 (46.9 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 40/137 (29%), Positives = 56/137 (40%)
Query: 684 YTGTGNIGSRQTAPVVANYVGNNSNAGAASG-----LLANQMGQYGNQYSGSRLPAAGT- 737
YT G++G VGN GA G +G + + + AAG
Sbjct: 167 YT-CGDVG-HVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCT--QKVAAGNV 222
Query: 738 ---SAARQSCSSCGAVGHSSMNCPSIMS---GPGQSSGGGY----ANSFSSGAGIATSSE 787
+C SCG VGH + +C + G Q G G+ + SG G +
Sbjct: 223 RSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQRGSGGG-GNDNA 281
Query: 788 CYKCHKTGHWARDCPSL 804
CYKC K GH+AR+C S+
Sbjct: 282 CYKCGKEGHFARECSSV 298
Score = 43 (20.2 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 230 GKWTIKARVTAKG--ELRHYNNQRGDG 254
GK T VTA G L+ NN RG+G
Sbjct: 67 GK-TKAVNVTAPGGGSLKKENNSRGNG 92
>ZFIN|ZDB-GENE-030131-5045 [details] [associations]
symbol:cnbpa "CCHC-type zinc finger, nucleic acid
binding protein a" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0060322 "head development" evidence=IMP]
[GO:0014029 "neural crest formation" evidence=IMP] [GO:0014036
"neural crest cell fate specification" evidence=IMP] [GO:0051216
"cartilage development" evidence=IMP] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
ZFIN:ZDB-GENE-030131-5045 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0003697 GO:GO:0051216 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 HOVERGEN:HBG000397 GO:GO:0060322 GO:GO:0014036
InterPro:IPR025836 Pfam:PF14392 EMBL:AY228240 IPI:IPI00481422
UniGene:Dr.31379 STRING:Q801Z9 InParanoid:Q801Z9
ArrayExpress:Q801Z9 Uniprot:Q801Z9
Length = 163
Score = 109 (43.4 bits), Expect = 0.00059, P = 0.00059
Identities = 26/67 (38%), Positives = 32/67 (47%)
Query: 744 CSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAG----IA-----TSSECYKCHKT 794
C CG GH NCP+ G G+ G G + F G IA T CY CH++
Sbjct: 8 CFGCGRSGHWIKNCPNAGRGRGRGRGRG-KDLFCYRCGEQGHIARDCEQTEDACYNCHRS 66
Query: 795 GHWARDC 801
GH +RDC
Sbjct: 67 GHISRDC 73
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.397 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 834 779 0.00094 121 3 11 22 0.42 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 43
No. of states in DFA: 626 (67 KB)
Total size of DFA: 409 KB (2198 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 71.87u 0.07s 71.94t Elapsed: 00:00:04
Total cpu time: 71.88u 0.07s 71.95t Elapsed: 00:00:05
Start: Sat May 11 15:41:43 2013 End: Sat May 11 15:41:48 2013