BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003281
(834 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225427514|ref|XP_002264009.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Vitis vinifera]
Length = 882
Score = 1103 bits (2852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 565/872 (64%), Positives = 663/872 (76%), Gaps = 53/872 (6%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQV D++LV QQQ + +RFR++LSDG QQGMLATQRNELV SG LQ GSVV
Sbjct: 25 PVLQVADIRLV---NTQQQSNSNERFRILLSDGCHLQQGMLATQRNELVKSGRLQKGSVV 81
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKP------------VPAQR-----PSSN 104
+LT+F CNVI++RMI+I++DLDVI++KCDPIG+P P R PSS
Sbjct: 82 QLTQFVCNVIKDRMIIIIIDLDVILEKCDPIGEPKQYVQGGTAGGVAPIARTSAPMPSSV 141
Query: 105 EQPGSVTGNPQS--------------NATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSN 150
+ PG+V GNPQS N GV+ +H N+ S + R G+N
Sbjct: 142 DHPGTVLGNPQSFGNSSLTGGSAAKPNMAGVASPYHANSFSSN-------PDSGRFAGTN 194
Query: 151 LPPNYFK-------PEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSM 203
PP Y K P A +GS+ +QS F N + E SR + AR PQ+ Y Q P M
Sbjct: 195 APPMYSKMQPDAGIPASAASTGSYGDQSTGFRNNKVEVSRAPYNAPARQPQSAYQQPPPM 254
Query: 204 YANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLD 263
Y NRG V ++E +RIIPIAALNPY G+WTIKARVTAKGELRHYNN RGDGKVF FDLLD
Sbjct: 255 YTNRGPVARNEAAARIIPIAALNPYQGRWTIKARVTAKGELRHYNNPRGDGKVFSFDLLD 314
Query: 264 SDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQ 323
SDGGEIRVTCFNAVADQFY+Q+E GK+YL+S+GSLKPAQK FNHL ND EIFL+ TS +Q
Sbjct: 315 SDGGEIRVTCFNAVADQFYNQIETGKVYLISKGSLKPAQKTFNHLRNDHEIFLESTSTIQ 374
Query: 324 LCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLH 383
C++DD SIPRQQFHFR I+DVE MENNSVVD+IGVVS+ISP+AS+MRKNGTETQKR LH
Sbjct: 375 PCFDDDNSIPRQQFHFRSISDVESMENNSVVDVIGVVSFISPSASIMRKNGTETQKRALH 434
Query: 384 LRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQL 443
L+DMSGRSVELTLWGNFCN +G RLQ+MCDSGVFP+LAVK+ RV+DFNGK VGTIST+QL
Sbjct: 435 LKDMSGRSVELTLWGNFCNAEGQRLQNMCDSGVFPVLAVKSARVNDFNGKAVGTISTSQL 494
Query: 444 FIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDW 503
FIEPDFPEA +LKEWF+KEG+NT SVSISR+ S+GR D+RKT+SQIKDE LGT EKPDW
Sbjct: 495 FIEPDFPEARKLKEWFDKEGRNTPSVSISREVTSMGRTDVRKTISQIKDERLGTSEKPDW 554
Query: 504 ITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQ 563
ITV AT+ +IK DNFCYTACPIMIGDR CNKKV NNGDG+W C+RCDQSV +CDYRYILQ
Sbjct: 555 ITVCATVSFIKVDNFCYTACPIMIGDRQCNKKVTNNGDGKWRCERCDQSVDDCDYRYILQ 614
Query: 564 FQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLK 623
FQIQDHTGLTWVTAFQEC EEIMG+SAK+LY LKY +Q+DEKFGE++R FTKY FKLK
Sbjct: 615 FQIQDHTGLTWVTAFQECGEEIMGISAKNLYYLKYEEQDDEKFGEILRGVLFTKYSFKLK 674
Query: 624 VKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSGDSTSFALKAENIIPKPEMT 683
VKEE FSDEQRVKSTVVKAE+ N+SSE+RF+LD+++K K DST F LK+EN+I MT
Sbjct: 675 VKEEIFSDEQRVKSTVVKAEKVNFSSESRFLLDMVEKHKVEDST-FPLKSENVISNGGMT 733
Query: 684 YTGTGNIGSRQTAPVVANYVGNNSNAGAASGLLANQMGQYGNQYSGSRLPAAGTSAARQS 743
G GN+G RQ+ P V NY GN SNAG G ANQ Q+GNQY S L A G++ QS
Sbjct: 734 NPGLGNVGIRQSTPSV-NYSGNASNAGRDFGFPANQGVQHGNQYGSSGLSATGSTGMYQS 792
Query: 744 CSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSG-AGIATSSECYKCHKTGHWARDCP 802
C+SCG GHSS NCPS+M P QSSGGGY + S+G + T+ ECYKCH+ GHWARDCP
Sbjct: 793 CNSCGGTGHSSSNCPSVMHSPRQSSGGGYVSRASTGPSAGGTTGECYKCHQFGHWARDCP 852
Query: 803 SLNAAPPAYGSSGIGISAAGYRGAPRQQVGGF 834
LN PPAYGSS G+++ Y +Q+VGGF
Sbjct: 853 GLNTGPPAYGSS--GVNSGSYSSFAKQRVGGF 882
>gi|147856620|emb|CAN82475.1| hypothetical protein VITISV_038295 [Vitis vinifera]
Length = 882
Score = 1101 bits (2847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/872 (64%), Positives = 662/872 (75%), Gaps = 53/872 (6%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQV D++LV QQQ + +RFR++LSDG QQGMLATQRNELV SG LQ GSVV
Sbjct: 25 PVLQVADIRLV---NTQQQSNSNERFRILLSDGCHLQQGMLATQRNELVKSGRLQKGSVV 81
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKP------------VPAQR-----PSSN 104
+LT+F CNVI++RMI+I++DLDVI++KCDPIG+P P R PSS
Sbjct: 82 QLTQFVCNVIKDRMIIIIIDLDVILEKCDPIGEPKQYVQGGTAGGVAPIARTSAPMPSSV 141
Query: 105 EQPGSVTGNPQS--------------NATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSN 150
+ PG+V GNPQS N GV+ +H N+ S + R G+N
Sbjct: 142 DHPGTVLGNPQSFGNSSLTGGSAAKPNMAGVASPYHANSFSSN-------PDSGRFAGTN 194
Query: 151 LPPNYFK-------PEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSM 203
PP Y K P A +GS+ +QS F N + E SR + AR PQ+ Y Q P M
Sbjct: 195 APPMYSKMQPDAGIPASAASTGSYGDQSTGFRNNKVEVSRAPYNAPARQPQSAYQQPPPM 254
Query: 204 YANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLD 263
Y NRG V ++E +RIIPIAALNPY G+WTIKARVTAKGELRHYNN RGDGKVF FDLLD
Sbjct: 255 YTNRGPVARNEAXARIIPIAALNPYQGRWTIKARVTAKGELRHYNNPRGDGKVFSFDLLD 314
Query: 264 SDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQ 323
SDGGEIRVTCFNAVADQFY+Q+E GK+YL+S+GSLKPAQK FNHL ND EIFL+ TS +Q
Sbjct: 315 SDGGEIRVTCFNAVADQFYNQIETGKVYLISKGSLKPAQKTFNHLRNDHEIFLESTSTIQ 374
Query: 324 LCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLH 383
C++DD SIPRQQFHFR I+DVE MENNSVVD+IGVVS+ISP+AS+MRKNGTETQKR LH
Sbjct: 375 PCFDDDNSIPRQQFHFRXISDVESMENNSVVDVIGVVSFISPSASIMRKNGTETQKRALH 434
Query: 384 LRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQL 443
L+DMSGRSVELTLWGNFCN +G RLQ+MCDSGVFP+LAVK+ RV+DFNGK VGTIST+QL
Sbjct: 435 LKDMSGRSVELTLWGNFCNAEGQRLQNMCDSGVFPVLAVKSARVNDFNGKAVGTISTSQL 494
Query: 444 FIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDW 503
FIEPDFPEA +LKEWF+KEG+NT SVSISR+ +GR D+RKT+SQIKDE LGT EKPDW
Sbjct: 495 FIEPDFPEARKLKEWFDKEGRNTPSVSISREVTXMGRTDVRKTISQIKDERLGTSEKPDW 554
Query: 504 ITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQ 563
ITV AT+ +IK DNFCYTACPIMIGDR CNKKV NNGDG+W C+RCDQSV +CDYRYILQ
Sbjct: 555 ITVCATVSFIKVDNFCYTACPIMIGDRQCNKKVTNNGDGKWRCERCDQSVDDCDYRYILQ 614
Query: 564 FQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLK 623
FQIQDHTGLTWVTAFQEC EEIMG+SAK+LY LKY +Q+DEKFGE++R FTKY FKLK
Sbjct: 615 FQIQDHTGLTWVTAFQECGEEIMGISAKNLYYLKYEEQDDEKFGEILRGVLFTKYSFKLK 674
Query: 624 VKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSGDSTSFALKAENIIPKPEMT 683
VKEE FSDEQRVKSTVVKAE+ N+SSE+RF+LD+++K K DST F LK+EN+I MT
Sbjct: 675 VKEEIFSDEQRVKSTVVKAEKVNFSSESRFLLDMVEKHKVEDST-FPLKSENVISNGGMT 733
Query: 684 YTGTGNIGSRQTAPVVANYVGNNSNAGAASGLLANQMGQYGNQYSGSRLPAAGTSAARQS 743
G GN+G RQ+ P V NY GN SNAG G ANQ Q+GNQY S L A G++ QS
Sbjct: 734 NPGLGNVGIRQSTPSV-NYSGNASNAGRDFGFPANQGVQHGNQYGSSGLSATGSTGMXQS 792
Query: 744 CSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSG-AGIATSSECYKCHKTGHWARDCP 802
C+SCG GHSS NCPS+M P QSSGGGY + S+G + T+ ECYKCH+ GHWARDCP
Sbjct: 793 CNSCGGTGHSSSNCPSVMHSPRQSSGGGYVSRASTGPSAGGTTGECYKCHQFGHWARDCP 852
Query: 803 SLNAAPPAYGSSGIGISAAGYRGAPRQQVGGF 834
LN PPAYGSS G+++ Y +Q+VGGF
Sbjct: 853 GLNTGPPAYGSS--GVNSGSYSSFAKQRVGGF 882
>gi|255557709|ref|XP_002519884.1| replication factor A 1, rfa1, putative [Ricinus communis]
gi|223540930|gb|EEF42488.1| replication factor A 1, rfa1, putative [Ricinus communis]
Length = 901
Score = 1026 bits (2652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/861 (60%), Positives = 629/861 (73%), Gaps = 58/861 (6%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P LQV +LK V +KQ QQ + RFR++LSDGS QQ ML TQ N LV G L+ GSVV
Sbjct: 26 PTLQVTELKQVQTKQPQQSE----RFRLILSDGSHLQQAMLGTQINHLVKDGNLRPGSVV 81
Query: 62 RLTKFTCNVIQNRMIV--------------IVMDLDVII------DKCDPIGKPVPAQR- 100
+L ++TC +Q RM++ + L+ I+ KC IG PV AQ+
Sbjct: 82 QLIQYTCTTVQGRMLLGSRSCIGCERNRGRAYLLLNEILLGFFSFAKCAIIGNPVSAQKT 141
Query: 101 --PS--SNEQPGSVTGNPQSNATG-----------VSLQHHNNTRVSQLPGDT--DAVPA 143
PS S +QP S NPQS +G +++ N R++QL G + + +
Sbjct: 142 LGPSHPSTDQPVSSPANPQSYGSGSPAGGMVENPNLNVSSLQNPRMNQLHGSSHPSSYDS 201
Query: 144 ARHVGSNLPPNYFKPEVGAG-------SGSFSNQSASFSNPRPEFSRPYASNYARTPQAP 196
R+V +N PP + K E G+G + S++ QSA F NPRPE + + Y P
Sbjct: 202 GRYVTTNAPPCHLKAEPGSGLPGSASMNRSYNEQSAGFCNPRPEIPQTTGT-YPYPPCPA 260
Query: 197 YMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKV 256
Y Q P MY+NRG V K+E P RI+PI+ALNPY G+WTIKARVTAKGELRHYNN RGDGKV
Sbjct: 261 YQQPPPMYSNRGPVAKNEAPPRIMPISALNPYQGRWTIKARVTAKGELRHYNNVRGDGKV 320
Query: 257 FHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFL 316
F FDLLDSDGGEIRV CFN VADQFYHQ+EAGK+YL+SRG+LKPAQK FNHLHNDLEIFL
Sbjct: 321 FSFDLLDSDGGEIRVICFNTVADQFYHQIEAGKVYLISRGNLKPAQKTFNHLHNDLEIFL 380
Query: 317 DMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTE 376
+ S++Q C+EDD +IPRQQFHFRPI++VEGM+NNSVVD+IG+VS I+P AS+MRKNGTE
Sbjct: 381 ESNSVIQPCFEDDDAIPRQQFHFRPISEVEGMDNNSVVDIIGMVSCITPVASIMRKNGTE 440
Query: 377 TQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVG 436
TQKRTL L+D SGRSVELTLWGNFCN +G RLQ+MCDSG FP+LAVK+GRVSDFNGK VG
Sbjct: 441 TQKRTLQLKDNSGRSVELTLWGNFCNAEGQRLQNMCDSGGFPVLAVKSGRVSDFNGKAVG 500
Query: 437 TISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLG 496
TIST+QLFIEPD PEA RLKEWFEKEG+NT SVSISR+ SVGR++I KT+SQIKDE LG
Sbjct: 501 TISTSQLFIEPDIPEARRLKEWFEKEGRNTPSVSISRELSSVGRSEIHKTISQIKDEKLG 560
Query: 497 TKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVEC 556
T EKPDWIT++AT++YIK DNFCYTACPIM GDRPC+KKV NNGDG+W C++CDQS+ EC
Sbjct: 561 TSEKPDWITINATVIYIKADNFCYTACPIMAGDRPCSKKVTNNGDGKWRCEKCDQSMDEC 620
Query: 557 DYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFT 616
DYRYILQ Q+QDHTG+TWVTAFQE EEIMG+SAKDL+ +KY +Q+DE F +++R F+
Sbjct: 621 DYRYILQLQLQDHTGITWVTAFQESGEEIMGISAKDLHFMKYENQDDESFSKILRQVLFS 680
Query: 617 KYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSGDSTSFALKAENI 676
K++ KLKVKEETFSDEQRVKSTVV+AE+ N+SS++RF+L++M+K KSG+S A E+
Sbjct: 681 KFVIKLKVKEETFSDEQRVKSTVVRAEKVNHSSQSRFLLEIMEKYKSGNSIPSASNVESN 740
Query: 677 IPKPEMTYTGTGNIGSRQTAPVVANYVGNNSNAGAASGLLANQMGQYGNQYSGSRLPAAG 736
P TG +IGSR + +N VG +S A GL NQ+GQYGNQ+S AG
Sbjct: 741 YPNSGAN-TGIDSIGSRIGGSLNSNQVGKSSFAAREFGLQTNQVGQYGNQFS------AG 793
Query: 737 TSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIA-TSSECYKCHKTG 795
SC SCGA HSS NCPS ++ P QS+GG YAN SS AG A ECYKCH+ G
Sbjct: 794 YPTHNLSCISCGATSHSSANCPSTINAPRQSAGGFYANQPSSLAGSAGAGGECYKCHQVG 853
Query: 796 HWARDCPSLNAAPPAYGSSGI 816
HWARDCP LN PPAYGS+ I
Sbjct: 854 HWARDCPGLNNIPPAYGSTAI 874
>gi|449456771|ref|XP_004146122.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Cucumis sativus]
Length = 861
Score = 1007 bits (2603), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/846 (59%), Positives = 612/846 (72%), Gaps = 48/846 (5%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P+LQV+DLKLV QQ +RFR+++SDG+ QQGML TQ NELV SG LQ GS+V
Sbjct: 30 PILQVIDLKLV----NTSQQSGSERFRLLVSDGTHFQQGMLGTQLNELVKSGKLQKGSIV 85
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNP------- 114
RL ++ CN +Q R+I+IV++LDVI + CD IG+PV A R S+N +++GNP
Sbjct: 86 RLRQYVCNPVQERLIIIVIELDVIEEMCDIIGEPVSATRSSAN----ALSGNPLPSVGGL 141
Query: 115 ----------QSNATGVSLQHH--NNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGA 162
+ N + S + N + V + ++ R S PP+Y K + G+
Sbjct: 142 GASPGSGMIGKGNVSSASFEQPKVNQSHVPHMGSYSNPPETGRFSASIAPPSYSKTDSGS 201
Query: 163 G-------SGSFSNQSASFSN-----PRPEFSRPYASNYARTPQAPYMQSPSMYANRGLV 210
+GS+ +Q ++ N PRP P SN PQ Y Q PSMY+NRG +
Sbjct: 202 RFNGPSPLTGSYGDQKMAYHNSGSDIPRP----PLNSNAYARPQPIYQQPPSMYSNRGPI 257
Query: 211 GKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIR 270
K+E RI+PI+ALNPY G+WTIKARVT+KGELRHYNN RGDGKVF FDLLD+ GEIR
Sbjct: 258 AKNEAAPRIMPISALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAYRGEIR 317
Query: 271 VTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDA 330
VTCFN VADQFY+Q+E+GK+Y +S+GSLKPAQKNFNHL ND EIFL+ TS +Q C+EDD
Sbjct: 318 VTCFNTVADQFYNQIESGKVYFISKGSLKPAQKNFNHLKNDYEIFLENTSTIQPCFEDDQ 377
Query: 331 SIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGR 390
SIP+QQFHF I ++EGM++NSVVD+IGVVS I+P SLMRKNGTETQKR+L L+DMSGR
Sbjct: 378 SIPQQQFHFHQIGEIEGMDSNSVVDVIGVVSSINPATSLMRKNGTETQKRSLQLKDMSGR 437
Query: 391 SVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFP 450
SVELTLWGNFC +G RLQ+MCDSG+FP+LAVK+ RVSDFNGK VGTIST+QLFIEPDFP
Sbjct: 438 SVELTLWGNFCQAEGQRLQNMCDSGLFPVLAVKSSRVSDFNGKAVGTISTSQLFIEPDFP 497
Query: 451 EAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATI 510
EAH L+EWFE+EG++T SVSISR+ SVGR D+RKT+SQIKDE LGT EKPDWITVSAT+
Sbjct: 498 EAHSLREWFEREGRSTLSVSISREVASVGRTDVRKTISQIKDERLGTSEKPDWITVSATV 557
Query: 511 VYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHT 570
+IK D+FCYTACPIMIGDR C+KKV NNGDG+W CDRCDQSV ECDYRYILQ QIQDHT
Sbjct: 558 SFIKVDSFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHT 617
Query: 571 GLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFS 630
GLTWVTAFQE EEIMG+ AK LY LKY +Q+DEKF E++R FTK++ KLK+KEETFS
Sbjct: 618 GLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFS 677
Query: 631 DEQRVKSTVVKAERYNYSSETRFILDLMDKLKSGDSTSFALKAENIIPKPEMTYTGTGNI 690
DEQRV+STVVKAE N+SSE+RF+L+LM+KLK +S+S KAE+ I T + NI
Sbjct: 678 DEQRVRSTVVKAESINFSSESRFLLNLMEKLKPENSSSATPKAESTIHNFGFRDTASENI 737
Query: 691 GSRQTAPVVANYVGNNSNAGAASGLLANQMGQYGNQYSGSRLPAAGTSAARQSCSSCGAV 750
G Q + N + G NQ QYGNQYS SR + + C+SCG
Sbjct: 738 GGGQFVSPIRNSTNFSREYGT-----PNQGVQYGNQYSSSRPSPSTPLNSNTYCNSCGGS 792
Query: 751 GHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPSLNAAPPA 810
GHSS NCPSIMSGP S GGG ++ +SG TS EC+KCH+TGHWARDCP L PPA
Sbjct: 793 GHSSTNCPSIMSGPALSVGGGMYSNQASGPSGGTSGECFKCHQTGHWARDCPGLANVPPA 852
Query: 811 YGSSGI 816
YG+ G
Sbjct: 853 YGNRGF 858
>gi|224074474|ref|XP_002304377.1| predicted protein [Populus trichocarpa]
gi|222841809|gb|EEE79356.1| predicted protein [Populus trichocarpa]
Length = 701
Score = 969 bits (2505), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/695 (66%), Positives = 554/695 (79%), Gaps = 23/695 (3%)
Query: 144 ARHVGSNLPPNYFKPEVGAGS----GSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQ 199
R +N PP Y K E AGS G + NQ+A + NPRPE S+P+ +Y+R PQ+ Y Q
Sbjct: 26 GRFAPTNAPPLYPKVEATAGSVPSSGLYVNQNAGYLNPRPEISQPHMGSYSRPPQSAYQQ 85
Query: 200 SPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHF 259
P MY+NRG V ++E P RIIPI ALNPY G+WTIKARVTAKGELRHYNN RGDGKVF F
Sbjct: 86 PPPMYSNRGPVARNEAPPRIIPITALNPYQGRWTIKARVTAKGELRHYNNTRGDGKVFSF 145
Query: 260 DLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMT 319
DLLDSDGGEIRVTCFN VADQFYHQ+EAG++YL+S+G+LKPAQKNFNHL +DLEIFL+ T
Sbjct: 146 DLLDSDGGEIRVTCFNQVADQFYHQIEAGRVYLISKGNLKPAQKNFNHLRHDLEIFLEST 205
Query: 320 SMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQK 379
S +Q C+EDD +IP+QQFHFRPI+DVE MENNSVVD+IGVV+ I+PT SLMRKNGTETQK
Sbjct: 206 STIQPCFEDDNTIPKQQFHFRPISDVEDMENNSVVDVIGVVTSIAPTTSLMRKNGTETQK 265
Query: 380 RTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTIS 439
RTL L+DMSGRSVELTLWGNFCN +G RLQH+CDSG FP+LAVK+GR+S+F+GK VGTIS
Sbjct: 266 RTLQLKDMSGRSVELTLWGNFCNAEGQRLQHICDSGGFPVLAVKSGRISEFSGKAVGTIS 325
Query: 440 TTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKE 499
T+QLFIEPD PEA+RLKEWF+++G+NT S+SISR++ ++GR+D+ KT+SQIKDE LGT E
Sbjct: 326 TSQLFIEPDSPEANRLKEWFDRDGRNTPSLSISRETSTLGRSDVMKTISQIKDERLGTSE 385
Query: 500 KPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYR 559
KPDWITV AT++Y+K DNFCYTACPIM G+RPCNKKV NNGDG+W C++CDQSV ECDYR
Sbjct: 386 KPDWITVPATVIYVKSDNFCYTACPIMSGERPCNKKVTNNGDGKWRCEKCDQSVDECDYR 445
Query: 560 YILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYL 619
YILQFQIQDHTG++WVTAFQEC EEIMG+SAKDL+ LK+ Q+DE F +V+R F++Y+
Sbjct: 446 YILQFQIQDHTGISWVTAFQECGEEIMGISAKDLHYLKHEQQDDEGFSKVLRQVLFSRYV 505
Query: 620 FKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSGDSTSFALKAENIIPK 679
FKLKVKEETFSDEQRVKSTVVK+E+ NYSS++R +LD+M+K KSG+ TSFA KAE+
Sbjct: 506 FKLKVKEETFSDEQRVKSTVVKSEKVNYSSQSRLLLDMMEKFKSGNDTSFACKAESSYHN 565
Query: 680 PEMTYTGTGNIGSRQTAPVVANYVGNNSNAGAASGLLANQMGQYGNQYSGSRLPAAGTSA 739
P + GN GSRQ P +N VG+ S G GL ANQ+GQYGNQ P +S
Sbjct: 566 PGVNNAVIGNFGSRQAGPPGSNPVGSTSYTGNV-GLPANQLGQYGNQ-QNPMFPMQSSSG 623
Query: 740 ARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWAR 799
A +SC+SCGA HSS NCPS+++ PGQS GG YAN S G + ECYKCH+ GHWAR
Sbjct: 624 AYRSCNSCGATSHSSANCPSMVNAPGQSMGGSYANRTSQGG----TGECYKCHQVGHWAR 679
Query: 800 DCPSLNAAPPAYGSSGIGISAAGYRGAPRQQVGGF 834
DCP L+++ G G GIS +Q VGGF
Sbjct: 680 DCPGLSSS----GKMG-GIS--------KQHVGGF 701
>gi|356529769|ref|XP_003533460.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Glycine max]
Length = 894
Score = 941 bits (2431), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/889 (54%), Positives = 617/889 (69%), Gaps = 74/889 (8%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQV++LKLV Q QQ +R+R+VLSDGS QQGMLATQ+N+LV +G LQ GSVV
Sbjct: 24 PVLQVIELKLV----QSQQNSNVERYRLVLSDGSHYQQGMLATQKNDLVHAGKLQKGSVV 79
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNE----QPGSVTGNPQ-- 115
RLT+F CNV+Q+R I+I++DLDV++DKC+ IG+PVPA + + E Q G +GNPQ
Sbjct: 80 RLTQFICNVVQSRKIIIIVDLDVVLDKCELIGEPVPAPKDAPTESATGQSGVTSGNPQLL 139
Query: 116 --SNATGVSLQHHNNTRVSQLPGDTDAVPAARHV-GSNLPPNYFKPEVGAG-----SGSF 167
S+ TG N S P P+A V SN PP Y K E G SGS
Sbjct: 140 NSSSHTGGMPARPN--VASPSPDHPKVNPSASGVYSSNAPPTYPKVEHGVSRSAPFSGSS 197
Query: 168 SNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPS-MYANRGLVGKSEVPSRIIPIAALN 226
Q+ F NP+ E SRP ++YAR PQ P + PS MY NR +G++E RIIPIAALN
Sbjct: 198 GGQNTGFRNPQFEASRPLQNSYARPPQQPMYRQPSPMYTNRAPMGRNEAAPRIIPIAALN 257
Query: 227 PYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVE 286
PY WTIKARVT KGELRHY N RGDGKVF FDLLDSDGGEIR TCFNAVADQFY+ +E
Sbjct: 258 PYQSMWTIKARVTFKGELRHYTNARGDGKVFSFDLLDSDGGEIRATCFNAVADQFYNVIE 317
Query: 287 AGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVE 346
AGK+YL+SRGS+KPAQKNFNHL ND E+ LD+ S++Q C +D+ SIP Q F++RPI+++E
Sbjct: 318 AGKVYLISRGSIKPAQKNFNHLRNDQELTLDVASIIQPCLDDNDSIPSQTFNYRPISEIE 377
Query: 347 GMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGL 406
+ENNS+VD+IGVV+ ISPTAS+MRKNGTE QKRTL L+DMSGRSVELTLWGNFC +G
Sbjct: 378 SLENNSIVDVIGVVTSISPTASIMRKNGTEVQKRTLQLKDMSGRSVELTLWGNFCIVEGQ 437
Query: 407 RLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNT 466
RLQ +CD+G FP+LA KA RV+DFNGK VGTI+T+QL++EPDFPEA LK WFE EGK+
Sbjct: 438 RLQTICDAGEFPVLATKAVRVNDFNGKSVGTIATSQLYVEPDFPEACTLKRWFENEGKSV 497
Query: 467 QSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIM 526
++SISR+ ++G+ D+RKT+SQIKDE LGT EKPDWI+V A + +IK DNFCY CP+
Sbjct: 498 PTLSISREISNLGKTDVRKTISQIKDEKLGTSEKPDWISVFAAVSHIKVDNFCYPGCPLK 557
Query: 527 IGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM 586
IGDR CNKKV NN DG WHC+RC+QS+ CD+RY+L QIQDHTG+TWVTAFQE EEIM
Sbjct: 558 IGDRQCNKKVTNNADGTWHCERCNQSIDTCDFRYLLSMQIQDHTGITWVTAFQESGEEIM 617
Query: 587 GMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYN 646
G+ AKDLY +KY +Q+D+KF E+ FT+Y+FKL++KEE +SDEQR+KST+VKAE+ N
Sbjct: 618 GIPAKDLYYMKYEEQDDDKFSEIFHKVLFTEYMFKLRIKEEFYSDEQRIKSTIVKAEKVN 677
Query: 647 YSSETRFILDLM-DKLKSGDSTSFALKAENIIPKPEMTYTGTGNIGSRQTAPVVANYVGN 705
++S++R L+L+ ++L++ S IP T G++ + Q P Y +
Sbjct: 678 FASKSRVNLELIFNELRAEKSKGIT------IPNSVTNNTRLGSVETGQVTPPA--YYKS 729
Query: 706 NSNAGAASGLLANQMG-QYGNQYSGSRLPAAGTS-AARQSCSSCGAVGHSSMNCPSIMSG 763
N+N G+ ANQ+G Q+GNQYS + +AG + + SC++CG GHSS CP+I +
Sbjct: 730 NANTSRDFGMPANQVGQQHGNQYSN--ISSAGAAPGSYTSCTNCGVSGHSSALCPNIRNV 787
Query: 764 PGQSSGGGYAN------------------------------SFSSG--------AGIATS 785
PG S+GGG+AN FS+ +G S
Sbjct: 788 PGHSAGGGFANRASAGLGGGGGASVECYKCHQSGHYARDCPGFSAAPPSSYGSNSGGGGS 847
Query: 786 SECYKCHKTGHWARDCPSLNAAPPAYGSSGIGISAAGYRGAPRQQVGGF 834
EC+KCH+TGHWARDCP L+AAP +YGS+ Y A +QQ GG+
Sbjct: 848 GECFKCHQTGHWARDCPGLSAAPSSYGSA--NAMQGRYGVAQKQQFGGY 894
>gi|357484641|ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
gi|355513943|gb|AES95566.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
Length = 1723
Score = 852 bits (2201), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/842 (55%), Positives = 592/842 (70%), Gaps = 53/842 (6%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQV+DLKLV Q QQ +R+R+VLSDG QQGMLATQ+NELV SG LQ GS+V
Sbjct: 22 PVLQVIDLKLV----QSQQNSGTERYRVVLSDGLHYQQGMLATQKNELVHSGRLQKGSIV 77
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNA--- 118
+L++F CNV+QNR I+I++DLDVI+DKCD IGKP PA + + S GN QS A
Sbjct: 78 KLSQFICNVVQNRKIIIIVDLDVIMDKCDLIGKPDPAPKEDPAQSAVSHAGNVQSAAGHL 137
Query: 119 ---------------TGVSLQHHNNTRVSQLPGDTDAVPA----------ARHVGSNLPP 153
TG + N + + T PA AR+ SN PP
Sbjct: 138 GSNAGNSQYLNSGSHTGGGVNVRPNVALPSMDRPTVNPPASVVYSNGSGSARYGASNAPP 197
Query: 154 NYFKPEVGAG-------SGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYAN 206
Y KPE G +GS Q+ SF NP E SRP ++Y R PQ P Q PS N
Sbjct: 198 PYPKPEPGVSLNRPASVNGSSGEQNTSFRNPLCETSRPVQNSYVRPPQ-PVNQQPSPMYN 256
Query: 207 RGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDG 266
RG G+++ P RIIPI+ALNPY WTIKARVTAKGELR Y N RG GKVF FDLLDSD
Sbjct: 257 RGPTGRNDAPPRIIPISALNPYQNMWTIKARVTAKGELRTYTNSRGQGKVFSFDLLDSDR 316
Query: 267 GEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCY 326
GEIR TCFN VA+QFY+ +E GK+YLVSRGSLKPAQKNFNHL ND EI LD+TS++Q C
Sbjct: 317 GEIRATCFNTVAEQFYNVIEVGKVYLVSRGSLKPAQKNFNHLPNDQEITLDITSVIQPCV 376
Query: 327 EDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRD 386
DD SI +Q ++FRPI D+E M+NNS+VD+I VV+ ISPTAS++RKNGTETQKR+L L+D
Sbjct: 377 -DDNSILQQIYNFRPIGDIENMQNNSIVDVIAVVTSISPTASIIRKNGTETQKRSLQLKD 435
Query: 387 MSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIE 446
MSGRSVELT+WG+FCN +G +LQ++CDSG FPIL VK+ RV+DFNGK +GTI+T+QL +E
Sbjct: 436 MSGRSVELTVWGSFCNTEGQKLQNICDSGEFPILVVKSARVNDFNGKSIGTIATSQLLVE 495
Query: 447 PDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITV 506
PDFPEA L+ WF++EG+N S SISR+S S G+++++KT+SQIKDE LGT +KPDWI++
Sbjct: 496 PDFPEAFTLRGWFDQEGRNVPSQSISRESSSFGKSEVQKTISQIKDENLGTSDKPDWISI 555
Query: 507 SATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQI 566
A +V+ K DNF YTACP MIGDR CNKKV +NGD WHC+RCD S + CDYRY+LQ QI
Sbjct: 556 CANVVFFKYDNFYYTACPNMIGDRKCNKKVTDNGDKTWHCERCDTS-LSCDYRYLLQMQI 614
Query: 567 QDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKE 626
QDHTG+TWVTAFQE E+IMGM AKDL+S+K+ ++++EKF E++ FTKY+FKLKVKE
Sbjct: 615 QDHTGMTWVTAFQEGGEDIMGMPAKDLFSVKFEEKDEEKFKEIISKVVFTKYMFKLKVKE 674
Query: 627 ETFSDEQRVKSTVVKAERY-NYSSETRFILDLMDKLKSGDSTSFALKAENIIPKPEMTYT 685
ETF+DE RVKSTVVKAE+ N++SE++ +LDL+DKLKS KAE + T
Sbjct: 675 ETFNDEARVKSTVVKAEKIVNFASESKSLLDLIDKLKSE-------KAEGTTINSAINTT 727
Query: 686 GTGNIGSRQTAPVVANYVGNNSNAGAASGLLANQMGQYGNQYSGSRLPAAGTSAARQSCS 745
G G++ Q P V N + +N+N G G ANQ+ QYGNQ++ S ++G + SCS
Sbjct: 728 GPGSLPIGQATPPVYNPINSNTNTGRDYGTPANQVSQYGNQHNSS-FASSGAPGSYMSCS 786
Query: 746 SCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPSLN 805
+CG HSS C + + P Q++GG Y N+ S G S +CYKC + GHWA +CPS++
Sbjct: 787 NCGGSDHSSAQCLHLRNPPEQTAGGAYVNTVSGSGG--ASGKCYKCQQPGHWASNCPSMS 844
Query: 806 AA 807
AA
Sbjct: 845 AA 846
>gi|297800136|ref|XP_002867952.1| hypothetical protein ARALYDRAFT_329623 [Arabidopsis lyrata subsp.
lyrata]
gi|297313788|gb|EFH44211.1| hypothetical protein ARALYDRAFT_329623 [Arabidopsis lyrata subsp.
lyrata]
Length = 801
Score = 843 bits (2178), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/805 (54%), Positives = 553/805 (68%), Gaps = 59/805 (7%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
+PVLQV +LK + + Q ++RFRM LSDG+ QGMLAT N+LV G LQ GS+
Sbjct: 25 IPVLQVTELKQL----KAYQDPTRERFRMGLSDGTHLHQGMLATDLNDLVKQGTLQSGSI 80
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTG----NPQS 116
VRLT F +V+Q R IVIV +L+VI D IG PVP + N+Q G+ +G S
Sbjct: 81 VRLTHFGVHVVQTRRIVIVRELEVIKSNSDIIGHPVPGGK--HNDQRGAESGIKLNTTGS 138
Query: 117 NATGVSLQHHNNT-----------RVSQLP--GDTDAVPAARHVGSNLPPNYFKPEVGAG 163
+ G+ ++ NN +V Q P G + +VPA+ + + N P G G
Sbjct: 139 DQQGLGVRQVNNIETGRSNAAMSPQVDQRPVFGTSSSVPASTTPSTRVDSN---PSAGHG 195
Query: 164 SGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPS----MYANRGLVGKSEVPSRI 219
SR ++AR P Y + P MYANRG V ++E P RI
Sbjct: 196 -----------------VSR---QDHARDPPTSYPRQPQPPPPMYANRGPVVRNEAPPRI 235
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
IPI AL+PY G+WTIKARVT K L+ Y+N RG+GKVF+FDLLD+DGGEIRVTCFNAVAD
Sbjct: 236 IPINALSPYSGRWTIKARVTNKAALKQYSNPRGEGKVFNFDLLDADGGEIRVTCFNAVAD 295
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
QF+ Q+ G +YL+SRGSL+PAQKNFNHL ND EI LD S ++ CYE+DA+IPRQQFHF
Sbjct: 296 QFFDQIVVGNLYLISRGSLRPAQKNFNHLPNDYEIMLDNASTIKQCYEEDAAIPRQQFHF 355
Query: 340 RPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGN 399
R I D+E MENNS++D+IG+VS ISPT ++ RKNGT T KR+L L+DMSGRSVE+T+WGN
Sbjct: 356 RTIGDIESMENNSIIDVIGIVSSISPTVTITRKNGTATPKRSLQLKDMSGRSVEVTMWGN 415
Query: 400 FCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWF 459
FCN +G RLQ++CDSG FP+LAVKAGR+S+FNGK V TI ++QLFI+PDF EAH+LK+WF
Sbjct: 416 FCNAEGQRLQNLCDSGEFPVLAVKAGRISEFNGKTVSTIGSSQLFIDPDFVEAHKLKDWF 475
Query: 460 EKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFC 519
E+EGK+ +S+SR+ GR D+RKT+SQIKDE LGT EKPDWITVSATI+Y+K +NFC
Sbjct: 476 EREGKSVPCISLSREFSGSGRVDVRKTISQIKDEKLGTSEKPDWITVSATIIYMKVENFC 535
Query: 520 YTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQ 579
YTACPIM GDRPC+KKV +NGDG W C++CD+SV ECDYRYILQ QIQDHT LTWVTAFQ
Sbjct: 536 YTACPIMNGDRPCSKKVTDNGDGTWRCEKCDKSVDECDYRYILQLQIQDHTDLTWVTAFQ 595
Query: 580 ECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTV 639
E EEIMG+SAKDLY +KY ++EKF +++R FTKY+FKLKVKEETFSDEQRVK+TV
Sbjct: 596 EAGEEIMGISAKDLYYVKYEHNDEEKFEDIIRKVAFTKYIFKLKVKEETFSDEQRVKATV 655
Query: 640 VKAERYNYSSETRFILDLMDKLKSGDSTSFALKAENIIPKPEMTYTGTGNIGSRQTAPVV 699
VK ++ NYSS+TR ILD MDKL++GD++S ++ NI E ++ + + +
Sbjct: 656 VKVDKLNYSSDTRTILDAMDKLRTGDASSLSI---NI--NAEGSHYNADAVNTGTGSSGS 710
Query: 700 ANYVGNNSNAGAASGLLANQMGQYGNQYSGSRLPAAGTSAARQSCSSCGAVGHSSMNCPS 759
+ +S L A+Q GQ GN YS P G A SC+ CG GH S NCPS
Sbjct: 711 SGTRDPSSVQRRDFSLHAHQSGQSGNHYSSGSRPQGGD--ATTSCNVCGNSGHVSANCPS 768
Query: 760 IMSGP-GQSSGGGYAN-SFSSGAGI 782
+ P GQ GG Y S S G GI
Sbjct: 769 ATTEPQGQYMGGSYRGMSGSYGGGI 793
>gi|15242405|ref|NP_199353.1| replication factor-A protein 1-like protein [Arabidopsis thaliana]
gi|9758730|dbj|BAB09168.1| replication protein A1-like [Arabidopsis thaliana]
gi|332007861|gb|AED95244.1| replication factor-A protein 1-like protein [Arabidopsis thaliana]
Length = 853
Score = 839 bits (2168), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/834 (52%), Positives = 557/834 (66%), Gaps = 78/834 (9%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
MPVLQV +LKL+ SK Q Q+ R++ +LSDG+ GML T N LV G +Q+GSV
Sbjct: 25 MPVLQVTELKLIQSKLHQNQE-SSNRYKFLLSDGTDLAAGMLNTSLNSLVNQGTIQLGSV 83
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNA-- 118
+RLT + CN+IQ R IV++M L+VI++KC+ IG P S N Q G V N QSN
Sbjct: 84 IRLTHYICNLIQTRRIVVIMQLEVIVEKCNIIGNPKEPGHSSINPQRGGV--NTQSNGGS 141
Query: 119 --------------TGVSLQH------HNNTRVSQ------------LPGDTDA----VP 142
GVS HN++ + + +DA V
Sbjct: 142 EQQQARRSDVNGGRYGVSANSPQPQVVHNSSDAGRYCVSANSPQPQVVHSSSDAGRYGVS 201
Query: 143 A---ARHVGSNLPP--NYFKPEV----GAGSG---------SFSNQSASFSNPRPEFSR- 183
A R V N P Y +P+V G GSG + + +A + R + R
Sbjct: 202 ANSPQRQVVHNSPDAGRYGQPQVSQRYGTGSGYPETSPSTRPYVSSNAGYGGSRQDQPRA 261
Query: 184 PYASN-YARTPQAPYM-QSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAK 241
P A+ Y+R Q+ Y Q P MY NRG V ++E P RI PIAALNPY G+WTIK RVT+K
Sbjct: 262 PTATTAYSRPVQSAYQPQQPPMYVNRGPVARNEAPPRINPIAALNPYQGRWTIKVRVTSK 321
Query: 242 GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPA 301
+LR +NN RG+GK+F FDLLD+DGGEIRVTCFN DQF+ ++ G +YL+SRG+LKPA
Sbjct: 322 ADLRRFNNPRGEGKLFSFDLLDADGGEIRVTCFNDAVDQFFDKIVVGNVYLISRGNLKPA 381
Query: 302 QKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVS 361
QKNFNHL ND EI LD S +Q C EDD +IPR FHFR I D+E MENNS D+IG+VS
Sbjct: 382 QKNFNHLPNDYEIHLDSASTIQPC-EDDGTIPRYHFHFRNIGDIENMENNSTTDVIGIVS 440
Query: 362 YISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILA 421
ISPT ++MRKN TE QKR+L L+DMSGRSVE+T+WGNFCN +G +LQ++CDSGVFP+LA
Sbjct: 441 SISPTVAIMRKNLTEVQKRSLQLKDMSGRSVEVTMWGNFCNAEGQKLQNLCDSGVFPVLA 500
Query: 422 VKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRA 481
+KAGR+ +FNGK V TI +Q FIEPDFPEA L++W+E+EG+N SISR+ VGR
Sbjct: 501 LKAGRIGEFNGKQVSTIGASQFFIEPDFPEARELRQWYEREGRNAHFTSISREFSGVGRQ 560
Query: 482 DIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGD 541
++RK ++QIKDE LGT EKPDWITV ATI ++K +NFCYTACPIM GDRPC+KKV NNGD
Sbjct: 561 EVRKVIAQIKDEKLGTSEKPDWITVCATISFMKVENFCYTACPIMNGDRPCSKKVTNNGD 620
Query: 542 GRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQ 601
G W C++CD+ V ECDYRYILQ Q+QDHT LTW TAFQE EEIMGMSAKDLY +KY +Q
Sbjct: 621 GTWRCEKCDKCVDECDYRYILQIQLQDHTDLTWATAFQEAGEEIMGMSAKDLYYVKYENQ 680
Query: 602 NDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
++EKF +++R+ FTKY+FKLK+KEET+SDEQRVK+TVVKAE+ NYSS TRF+L+ +DKL
Sbjct: 681 DEEKFEDIIRSVAFTKYIFKLKIKEETYSDEQRVKATVVKAEKLNYSSNTRFMLEAIDKL 740
Query: 662 KSGDSTSFALKAENIIPKPEMTYTGTGNIGSRQTAPVVANYVGNNSNAGAASGL-LANQM 720
K GD+ S +KAE+ + + +G G G+R TA V +A GL ANQ+
Sbjct: 741 KIGDANSLPIKAESSNYRSDAFNSGVGTSGTRDTASV---------DARREFGLPAANQV 791
Query: 721 GQYGNQYSGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMSGP-GQSSGGGYA 773
GQYGNQYS G + SC+ C + H S NCP++MS P GQ GG A
Sbjct: 792 GQYGNQYSSDARSLGGFT----SCNVCRSNSHVSANCPTLMSEPQGQYMGGTNA 841
>gi|297846122|ref|XP_002890942.1| hypothetical protein ARALYDRAFT_313748 [Arabidopsis lyrata subsp.
lyrata]
gi|297336784|gb|EFH67201.1| hypothetical protein ARALYDRAFT_313748 [Arabidopsis lyrata subsp.
lyrata]
Length = 822
Score = 836 bits (2160), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/823 (51%), Positives = 550/823 (66%), Gaps = 74/823 (8%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
MPVLQV +LK++ Q R++ +LSDG Q GML T N LV G +Q+GS+
Sbjct: 25 MPVLQVTELKMI----------QSNRYKFLLSDGIHLQAGMLNTTLNSLVIQGSIQLGSI 74
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKP-VPAQRPSSNEQPGSVTGNPQSNAT 119
VRLT + C++IQ R IVI+M L+VI+ KCD IG P P QR + +V N QSN
Sbjct: 75 VRLTHYVCSLIQGRRIVIIMQLEVIVAKCDIIGTPNEPGQRGGA-----AVPVNTQSNG- 128
Query: 120 GVSLQHHNNTRVS------------QLPGDTDAVPAARHVGSNLPPNYFKPEVGA----- 162
G Q + V+ L G ++ A R+ + + +P+VG
Sbjct: 129 GFDQQQARRSDVNGGRYGVSANSPQPLVGGLNSSDAGRY---GVSASLAQPQVGGLTVPM 185
Query: 163 --------GSGS-----------FSNQSASFSNPRPEFSR--PYASNYARTPQAPYM-QS 200
G+GS + + +A + R E R P + Y+R Q+ Y Q
Sbjct: 186 LGDMVQRYGTGSGYPETSPSTRPYVSSNAGYGGSRQEQPRAPPATTAYSRPVQSAYQPQQ 245
Query: 201 PSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFD 260
P MY NRG V ++E P RIIPIAALNPY G+WTIK RV++K ELR +NN RG+GK+F FD
Sbjct: 246 PPMYVNRGPVARNEAPPRIIPIAALNPYQGRWTIKVRVSSKAELRRFNNPRGEGKLFSFD 305
Query: 261 LLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTS 320
LLD+DGGEIRVTCFN DQF+ Q+ G +YL+SRG+LKPAQKN+NHL ND EI LD S
Sbjct: 306 LLDADGGEIRVTCFNDAVDQFFDQIVVGNVYLISRGNLKPAQKNYNHLPNDYEIHLDSAS 365
Query: 321 MVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKR 380
+Q C EDD +IPR QFHFR I+D+E ME+NS+ DLIG+VS I T +MRKNGTE KR
Sbjct: 366 TIQRC-EDDGTIPRNQFHFRNISDIENMESNSMTDLIGIVSSIGTTVPIMRKNGTEVDKR 424
Query: 381 TLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTIST 440
L L+DMSGRSVE+T+WGNFC+ +G +LQ++CDSGVFP+LA+KAGR+ +FNGK V TI +
Sbjct: 425 ALQLKDMSGRSVEVTMWGNFCSAEGQQLQNLCDSGVFPVLALKAGRIGEFNGKQVSTIGS 484
Query: 441 TQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEK 500
+Q F+EPDFPEA L++W+E+EG+N SISR+ VGR ++RK ++QIKDE LGT EK
Sbjct: 485 SQFFVEPDFPEARELRQWYEREGRNANFTSISREFSGVGRQEVRKVITQIKDEKLGTSEK 544
Query: 501 PDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRY 560
PDWITV ATI ++K +NFCYTACPIM GDRPC+KKV NNGDG W C++CD+ V ECDYRY
Sbjct: 545 PDWITVCATISFMKVENFCYTACPIMNGDRPCSKKVTNNGDGTWRCEKCDKCVDECDYRY 604
Query: 561 ILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLF 620
ILQ Q+QDHTGLTW TAFQE EEIMGMSAKDLY +KY +Q +EKF +++R+ FTKY+F
Sbjct: 605 ILQIQLQDHTGLTWATAFQEAGEEIMGMSAKDLYYVKYENQEEEKFEDIIRSVAFTKYIF 664
Query: 621 KLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSGDSTSFALKAENIIPKP 680
KLK+KEET+SDEQRVK+TVVKAE+ NY+S TR +L+ MDKLK GD+ S + E+ +
Sbjct: 665 KLKIKEETYSDEQRVKATVVKAEKLNYASNTRCMLEAMDKLKIGDANSLPINTESSNYRS 724
Query: 681 EMTYTGTGNIGSRQTAPVVANYVGNNSNAGAASGL-LANQMGQYGNQYSGSRLPAAGTSA 739
+ +G G G+R TA V +A GL ANQ+GQYGNQYS G +
Sbjct: 725 DAVNSGIGTSGTRDTASV---------DARREFGLPAANQVGQYGNQYSSGARSLGGIT- 774
Query: 740 ARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGI 782
SC++CG+ H S NCPS+MS P G +++G G+
Sbjct: 775 ---SCNACGSNSHVSANCPSLMSEPQGQYMNGTPGRYNAGGGM 814
>gi|186512039|ref|NP_567576.2| replication factor A1 [Arabidopsis thaliana]
gi|332658747|gb|AEE84147.1| replication factor A1 [Arabidopsis thaliana]
Length = 784
Score = 827 bits (2135), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/796 (54%), Positives = 539/796 (67%), Gaps = 61/796 (7%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
+PVLQV DLK +++ QQ ++RFRMVLSDG+ QGML T N LV G LQ GS+
Sbjct: 25 IPVLQVTDLKQIMA----QQDPTRERFRMVLSDGTYLHQGMLGTDLNNLVKEGTLQPGSI 80
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT- 119
VRLT+F +VI+ R IVIV L+V+ D IG PVP + N+Q G+ +G + N T
Sbjct: 81 VRLTRFVGDVIKGRRIVIVPQLEVLKQISDIIGHPVPGGK--HNDQRGADSG-IKFNTTE 137
Query: 120 --GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNP 177
G ++ NN PG ++A P+VG G+ S+ AS +
Sbjct: 138 QQGSGIRQVNNIE----PGRSNAA--------------ISPQVG---GTGSSVPASTTPS 176
Query: 178 RPEFSRPYASN------YARTPQAPYMQSPS----MYANRGLVGKSEVPSRIIPIAALNP 227
+S P + N YAR P Y P MYANRG V ++E P +IIP+ AL+P
Sbjct: 177 TRAYSNPSSGNGVTRQDYARDPPTSYPHQPQPPPPMYANRGPVARNEAPPKIIPVNALSP 236
Query: 228 YMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEA 287
Y G+WTIKARVT K L+ Y+N RG+GKVF+FDLLD+DGGEIRVTCFNAVADQFY Q+
Sbjct: 237 YSGRWTIKARVTNKAALKQYSNPRGEGKVFNFDLLDADGGEIRVTCFNAVADQFYDQIVV 296
Query: 288 GKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEG 347
G +YL+SRGSL+PAQKNFNHL ND EI LD S ++ CYE+DA+IPR QFHFR I D+E
Sbjct: 297 GNLYLISRGSLRPAQKNFNHLRNDYEIMLDNASTIKQCYEEDAAIPRHQFHFRTIGDIES 356
Query: 348 MENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLR 407
MENN +VD+IG+VS ISPT ++ RKNGT T KR+L L+DMSGRSVE+T+WG+FCN +G R
Sbjct: 357 MENNCIVDVIGIVSSISPTVTITRKNGTATPKRSLQLKDMSGRSVEVTMWGDFCNAEGQR 416
Query: 408 LQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQ 467
LQ +CDSGVFP+LAVKAGR+S+FNGK V TI ++QLFI+PDF EA +LK WFE+EGK+
Sbjct: 417 LQSLCDSGVFPVLAVKAGRISEFNGKTVSTIGSSQLFIDPDFVEAEKLKNWFEREGKSVP 476
Query: 468 SVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMI 527
+S+SR+ G+ D+RKT+SQIKDE LGT EKPDWITVSATI+Y+K DNFCYTACPIM
Sbjct: 477 CISLSREFSGSGKVDVRKTISQIKDEKLGTSEKPDWITVSATILYLKFDNFCYTACPIMN 536
Query: 528 GDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMG 587
GDRPC+KKV +NGDG W C++CD+SV ECDYRYILQ QIQDHT LT VTAFQE EEIMG
Sbjct: 537 GDRPCSKKVTDNGDGTWRCEKCDKSVDECDYRYILQLQIQDHTDLTCVTAFQEAGEEIMG 596
Query: 588 MSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNY 647
+SAKDLY +K +++EKF +++R FTKY FKLKVKEETFSDEQRVK+TVVK ++ NY
Sbjct: 597 ISAKDLYYVKNEHKDEEKFEDIIRKVAFTKYNFKLKVKEETFSDEQRVKATVVKVDKLNY 656
Query: 648 SSETRFILDLMDKLKSGDSTSFALKAENIIPKPEMTYTGTGNIGSRQTAPVVANYVGNNS 707
S++TR +L MDKL++ D+ S + E ++ TG G+ G+R + V
Sbjct: 657 SADTRTMLGAMDKLRTRDANSLPINPEGSDYNADVVNTGIGSSGTRDPSSVQRRDF---- 712
Query: 708 NAGAASGLLANQMGQYGNQYSGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMS--GPG 765
GL A+Q GQ GN YSG A SC+ CG GH S CP G
Sbjct: 713 ------GLHAHQSGQSGNHYSG--------GGATTSCNVCGNSGHVSAKCPGATKPQEQG 758
Query: 766 QSSGGGYANSFSSGAG 781
Q GG Y + S G
Sbjct: 759 QYMGGSYRGTTGSYGG 774
>gi|296088465|emb|CBI37456.3| unnamed protein product [Vitis vinifera]
Length = 754
Score = 815 bits (2105), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/581 (67%), Positives = 453/581 (77%), Gaps = 44/581 (7%)
Query: 237 RVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG 296
+ TAKGELRHYNN RGDGKVF FDLLDSDGGEIRVTCFNAVADQFY+Q+E GK+YL+S+G
Sbjct: 150 QFTAKGELRHYNNPRGDGKVFSFDLLDSDGGEIRVTCFNAVADQFYNQIETGKVYLISKG 209
Query: 297 SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDL 356
SLKPAQK FNHL ND EIFL+ TS +Q C++DD SIPRQQFHFR I+DVE MENNSVVD+
Sbjct: 210 SLKPAQKTFNHLRNDHEIFLESTSTIQPCFDDDNSIPRQQFHFRSISDVESMENNSVVDV 269
Query: 357 IGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGV 416
IGVVS+ISP+AS+MRKNGTETQKR LHL+DMSGRSVELTLWGNFCN +G RLQ+M
Sbjct: 270 IGVVSFISPSASIMRKNGTETQKRALHLKDMSGRSVELTLWGNFCNAEGQRLQNM----- 324
Query: 417 FPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSL 476
+GTIST+QLFIEPDFPEA +LKEWF+KEG+NT SVSISR+
Sbjct: 325 ------------------LGTISTSQLFIEPDFPEARKLKEWFDKEGRNTPSVSISREVT 366
Query: 477 SVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKV 536
S+GR D+RKT+SQIKDE LGT EKPDWITV AT+ +IK DNFCYTACPIMIGDR CNKKV
Sbjct: 367 SMGRTDVRKTISQIKDERLGTSEKPDWITVCATVSFIKVDNFCYTACPIMIGDRQCNKKV 426
Query: 537 MNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSL 596
NNGDG+W C+RCDQSV +CDYRYILQFQIQDHTGLTWVTAFQEC
Sbjct: 427 TNNGDGKWRCERCDQSVDDCDYRYILQFQIQDHTGLTWVTAFQEC--------------- 471
Query: 597 KYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILD 656
+Q+DEKFGE++R FTKY FKLKVKEE FSDEQRVKSTVVKAE+ N+SSE+RF+LD
Sbjct: 472 ---EQDDEKFGEILRGVLFTKYSFKLKVKEEIFSDEQRVKSTVVKAEKVNFSSESRFLLD 528
Query: 657 LMDKLKSGDSTSFALKAENIIPKPEMTYTGTGNIGSRQTAPVVANYVGNNSNAGAASGLL 716
+++K K DST F LK+EN+I MT G GN+G RQ+ P V NY GN SNAG G
Sbjct: 529 MVEKHKVEDST-FPLKSENVISNGGMTNPGLGNVGIRQSTPSV-NYSGNASNAGRDFGFP 586
Query: 717 ANQMGQYGNQYSGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSF 776
ANQ Q+GNQY S L A G++ QSC+SCG GHSS NCPS+M P QSSGGGY +
Sbjct: 587 ANQGVQHGNQYGSSGLSATGSTGMYQSCNSCGGTGHSSSNCPSVMHSPRQSSGGGYVSRA 646
Query: 777 SSG-AGIATSSECYKCHKTGHWARDCPSLNAAPPAYGSSGI 816
S+G + T+ ECYKCH+ GHWARDCP LN PPAYGSSG+
Sbjct: 647 STGPSAGGTTGECYKCHQFGHWARDCPGLNTGPPAYGSSGV 687
Score = 108 bits (271), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 62/94 (65%), Positives = 78/94 (82%), Gaps = 3/94 (3%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQV D++LV QQQ + +RFR++LSDG QQGMLATQRNELV SG LQ GSVV
Sbjct: 25 PVLQVADIRLV---NTQQQSNSNERFRILLSDGCHLQQGMLATQRNELVKSGRLQKGSVV 81
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKP 95
+LT+F CNVI++RMI+I++DLDVI++KCDPIG+P
Sbjct: 82 QLTQFVCNVIKDRMIIIIIDLDVILEKCDPIGEP 115
>gi|2828288|emb|CAA16702.1| replication A protein-like [Arabidopsis thaliana]
gi|7268708|emb|CAB78915.1| replication A protein-like [Arabidopsis thaliana]
Length = 717
Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/785 (51%), Positives = 503/785 (64%), Gaps = 107/785 (13%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
+PVLQV DLK +++ QQ ++RFRMVLSDG+ QGML T N LV G LQ GS+
Sbjct: 26 IPVLQVTDLKQIMA----QQDPTRERFRMVLSDGTYLHQGMLGTDLNNLVKEGTLQPGSI 81
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATG 120
VRLT+F +VI+ R IVIV L+V+ +Q + G+P
Sbjct: 82 VRLTRFVGDVIKGRRIVIVPQLEVL-------------------KQISDIIGHP------ 116
Query: 121 VSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSG-SFSNQSASFSNPRP 179
VP +H + GA SG F+ S R
Sbjct: 117 --------------------VPGGKH----------NDQRGADSGIKFNTTEQQGSGIRQ 146
Query: 180 EFS-RPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARV 238
+ P SN A +PQ VG P +IIP+ AL+PY G+WTIKARV
Sbjct: 147 VNNIEPGRSNAAISPQ---------------VG---APPKIIPVNALSPYSGRWTIKARV 188
Query: 239 TAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSL 298
T K L+ Y+N RG+GKVF+FDLLD+DGGEIRVTCFNAVADQFY Q+ G +YL+SRGSL
Sbjct: 189 TNKAALKQYSNPRGEGKVFNFDLLDADGGEIRVTCFNAVADQFYDQIVVGNLYLISRGSL 248
Query: 299 KPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIG 358
+PAQKNFNHL ND EI LD S ++ CYE+DA+IPR QFHFR I D+E MENN +VD+IG
Sbjct: 249 RPAQKNFNHLRNDYEIMLDNASTIKQCYEEDAAIPRHQFHFRTIGDIESMENNCIVDVIG 308
Query: 359 VVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFP 418
+VS ISPT ++ RKNGT T KR+L L+DMSGRSVE+T+WG+F Q +CDSGVFP
Sbjct: 309 IVSSISPTVTITRKNGTATPKRSLQLKDMSGRSVEVTMWGDF--------QSLCDSGVFP 360
Query: 419 ILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSV 478
+LAVKAGR+S+FNGK V TI ++QLFI+PDF EA +LK WFE+EGK+ +S+SR+
Sbjct: 361 VLAVKAGRISEFNGKTVSTIGSSQLFIDPDFVEAEKLKNWFEREGKSVPCISLSREFSGS 420
Query: 479 GRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMN 538
G+ D+RKT+SQIKDE LGT EKPDWITVSATI+Y+K DNFCYTACPIM GDRPC+KKV +
Sbjct: 421 GKVDVRKTISQIKDEKLGTSEKPDWITVSATILYLKFDNFCYTACPIMNGDRPCSKKVTD 480
Query: 539 NGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKY 598
NGDG W C++CD+SV ECDYRYILQ QIQDHT LT VTAFQE EEIMG+SAKDLY +K
Sbjct: 481 NGDGTWRCEKCDKSVDECDYRYILQLQIQDHTDLTCVTAFQEAGEEIMGISAKDLYYVKN 540
Query: 599 VDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLM 658
+++EKF +++R FTKY FKLKVKEETFSDEQRVK+TVVK ++ NYS++TR +L M
Sbjct: 541 EHKDEEKFEDIIRKVAFTKYNFKLKVKEETFSDEQRVKATVVKVDKLNYSADTRTMLGAM 600
Query: 659 DKLKSGDSTSFALKAENIIPKPEMTYTGTGNIGSRQTAPVVANYVGNNSNAGAASGLLAN 718
DKL++ D+ S + E ++ TG G+ G+R + V GL A+
Sbjct: 601 DKLRTRDANSLPINPEGSDYNADVVNTGIGSSGTRDPSSVQRRDF----------GLHAH 650
Query: 719 QMGQYGNQYSGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMS--GPGQSSGGGYANSF 776
Q GQ GN YSG A SC+ CG GH S CP GQ GG Y +
Sbjct: 651 QSGQSGNHYSG--------GGATTSCNVCGNSGHVSAKCPGATKPQEQGQYMGGSYRGTT 702
Query: 777 SSGAG 781
S G
Sbjct: 703 GSYGG 707
>gi|225444784|ref|XP_002278273.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit [Vitis
vinifera]
gi|297738589|emb|CBI27834.3| unnamed protein product [Vitis vinifera]
Length = 622
Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/660 (53%), Positives = 470/660 (71%), Gaps = 62/660 (9%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++QV+D+KL+ + Q+R+R +LSD +QQ MLATQ N+ V SG ++ GSV+
Sbjct: 22 PLVQVLDIKLI--------GNSQERYRFLLSDAVATQQAMLATQLNDRVKSGQVRKGSVI 73
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGV 121
+L + C+V+QNR I++V++++ II +C+ + GNP+ N
Sbjct: 74 QLIDYICSVVQNRKIIVVLNMETIIPECE-------------------IIGNPKMNT--- 111
Query: 122 SLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEF 181
++T + PG A VG + + S Q+ N P F
Sbjct: 112 ---ESHSTAQKEFPGGNRA-----------------RSVGVTNNNLSVQNGG--NKMPSF 149
Query: 182 SRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAK 241
RP + Q P+ Q P Y + G + K+E P+RIIPIAALNPY G+W IKARVTAK
Sbjct: 150 -RP-------SVQPPF-QPPPNYKSHGTILKNEAPARIIPIAALNPYQGRWAIKARVTAK 200
Query: 242 GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPA 301
G+LR YNN RGDGKVF FDLLDSDGGEIRVTCFNAV D+FY +E GK+YL+S+GSLKPA
Sbjct: 201 GDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYDTIEVGKVYLISKGSLKPA 260
Query: 302 QKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVS 361
QKNFNHL N+ EIFL+ +S V+LC ++D SIP+QQF FRPI+++E +ENNS++D+IG+V
Sbjct: 261 QKNFNHLKNEWEIFLEASSSVELCPDEDGSIPKQQFSFRPISEIENVENNSILDVIGIVI 320
Query: 362 YISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILA 421
++P+ ++RKNG ETQ+R ++L+D SGRS+ELT+WG FCN +G +LQ M DSG FP+LA
Sbjct: 321 SVNPSVPILRKNGMETQRRIVNLKDGSGRSIELTMWGEFCNREGHQLQEMIDSGSFPVLA 380
Query: 422 VKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVG-R 480
VK+G+V+DF+GK VGTIS TQLFI PDF EA L+EWF++ GKN S SISRD + G R
Sbjct: 381 VKSGKVNDFSGKSVGTISATQLFINPDFTEACNLREWFDRGGKNAASQSISRDIMPAGSR 440
Query: 481 ADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNG 540
+IRKTVSQIKDEGLG +KPDW+TV ATI +IK D FCY ACP+MIGDR CNKKV +G
Sbjct: 441 NEIRKTVSQIKDEGLGRSDKPDWVTVKATISFIKTDTFCYAACPLMIGDRQCNKKVTRSG 500
Query: 541 DGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVD 600
+ RW CDRC+Q +CDYRY+LQ Q+QDHTGLTWVTAFQE EEI+G SAK+LY LKY +
Sbjct: 501 NTRWQCDRCNQEFEDCDYRYLLQAQVQDHTGLTWVTAFQEAGEEILGCSAKELYLLKYEE 560
Query: 601 QNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDK 660
++D +FGE++R+ ++LF+LK+KEE + +EQRVK TVVKA++ NY+SE+R +LDL+ K
Sbjct: 561 EDDFRFGEIIRSRLLNQFLFRLKIKEEMYGEEQRVKITVVKADKVNYTSESRHLLDLISK 620
>gi|255546005|ref|XP_002514062.1| replication factor A 1, rfa1, putative [Ricinus communis]
gi|223546518|gb|EEF48016.1| replication factor A 1, rfa1, putative [Ricinus communis]
Length = 670
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/671 (53%), Positives = 485/671 (72%), Gaps = 38/671 (5%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++QV+D+K + S Q+ R+R ++SD +Q MLATQ N+ V G ++ GSVV
Sbjct: 22 PLVQVVDIKQIGSAQE--------RYRFLISDSVSTQHAMLATQLNDRVKHGFVKKGSVV 73
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKP-----VPAQRPSSNEQPGSVTGNPQS 116
+L + C+ +QNR I++V++L+ II +C+ IG + AQ+ S N G +
Sbjct: 74 QLIDYICSEVQNRKIIVVLNLETIIPECEIIGNAKTLTDMFAQKASQNGNSVQSAGVGYN 133
Query: 117 NATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSN 176
N++ + H NN + Q P +A + GS++ + F+P +FS+Q+ +N
Sbjct: 134 NSS--ARNHDNNVQNFQPP------LSAHNQGSSM--HNFRP-------TFSSQNHG-NN 175
Query: 177 PRPEFSRPYASNYARTPQA--PYMQSPSMYAN----RGLVGKSEVPSRIIPIAALNPYMG 230
+ S A NY Q+ P +Q P G + K+E P+RIIPIAALNPY G
Sbjct: 176 MQNFTSNLSAQNYGNNIQSFQPNVQPPYRPPPNYRNHGAIMKNEAPARIIPIAALNPYQG 235
Query: 231 KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKI 290
+W IKARVTAKG+LR YNN RGDGKVF FDLLDSDGGEIRVTCFNAV ++FY +E G++
Sbjct: 236 RWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVERFYDVIEVGRV 295
Query: 291 YLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMEN 350
YL+S+GSLKPAQ+NFNHL N+ EIFL+ TS V LC + D SIP+QQF F+ I+++E +EN
Sbjct: 296 YLISKGSLKPAQRNFNHLKNEWEIFLEATSTVDLCPDGDNSIPKQQFTFKTISEIENVEN 355
Query: 351 NSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQH 410
NS++D+IG+V ++P+ ++RKNG ETQ+R L+L+D SGR++ELTLWG+FCN +G +LQ
Sbjct: 356 NSILDVIGIVISVNPSVPILRKNGMETQRRILNLKDGSGRNIELTLWGDFCNKEGQQLQE 415
Query: 411 MCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVS 470
+ DSG FP+LAVKAG+VSDF+GK +GTIS+TQLFI PD PEAH LK+WF++ G++T SVS
Sbjct: 416 IVDSGDFPVLAVKAGKVSDFSGKSLGTISSTQLFINPDIPEAHGLKDWFDRGGQHTASVS 475
Query: 471 ISRDSLSVG-RADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGD 529
ISRD L G + +IRKTVSQIK EGLG ++PDW+TVSA I ++K D FCYTACP+MIGD
Sbjct: 476 ISRDILPGGSKNEIRKTVSQIKHEGLGRSDRPDWVTVSARITFVKTDTFCYTACPLMIGD 535
Query: 530 RPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMS 589
R CNKKV ++G+ RW CDRC+Q ECDYRY+LQ QIQDHTGLTWVTAFQE EEI+G+
Sbjct: 536 RQCNKKVTSSGNSRWQCDRCNQEFDECDYRYLLQVQIQDHTGLTWVTAFQESGEEILGLP 595
Query: 590 AKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSS 649
AK+LY LKY Q+D KF +V+R+ F ++LF+LK+KEE + DEQRVK TVVKAE+ NYSS
Sbjct: 596 AKELYQLKYEMQDDTKFSDVIRSRLFQQFLFRLKIKEEMYGDEQRVKITVVKAEKVNYSS 655
Query: 650 ETRFILDLMDK 660
E R++LDL+ +
Sbjct: 656 EGRYLLDLISQ 666
>gi|33621259|gb|AAQ23194.1| RPA 70kDa subunit [Pisum sativum]
Length = 637
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/664 (52%), Positives = 472/664 (71%), Gaps = 55/664 (8%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P+LQ++++ V+S + QQQR+R++LSD S MLA Q N+LVT+G ++ GS+V
Sbjct: 22 PLLQILEISSVIS----NKNSQQQRYRVLLSDAVSSHHAMLAAQLNDLVTTGRVKNGSIV 77
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIG--KP-VPAQRPSSNEQPGSVTGNPQSNA 118
+L + C + QNR I++V++++ II C+ IG KP V ++ P + G+ ++
Sbjct: 78 QLLDYICTLFQNRKIIMVLNMESIIPDCEIIGSPKPFVDSELPVQKALRDNTVGSSINSN 137
Query: 119 TGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPR 178
S ++N +Q G T HV + F+P +
Sbjct: 138 NNNSYNSNSNILAAQNTGST-------HVQN------FRPTI------------------ 166
Query: 179 PEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARV 238
P + P +Y RG V K+E P+R IPIAALNPY G+W I+ARV
Sbjct: 167 ----------------QPSYKPPPVYKGRGAVMKNEAPARTIPIAALNPYQGRWAIRARV 210
Query: 239 TAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSL 298
TAKG+LR YNN RGDGKVF FDLLDSDGGEIRVTCFNA+ D+FY +E GK+YL+S+G+L
Sbjct: 211 TAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAIVDRFYDSIEVGKVYLISKGNL 270
Query: 299 KPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIG 358
KPAQKNFNHL N+ EI LD+ S V+LC ++D S P+QQF FRPI+D+E +E+N+++D+IG
Sbjct: 271 KPAQKNFNHLKNEWEIMLDLNSTVELCPDEDGSYPKQQFSFRPISDIENVESNAILDVIG 330
Query: 359 VVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFP 418
VV+ ++P+ ++RKNG ET +R L+L+D SGRSVELTLWG FCN +G +LQ M D+GVFP
Sbjct: 331 VVTSVNPSVPILRKNGMETLRRILNLKDNSGRSVELTLWGEFCNREGQKLQEMVDAGVFP 390
Query: 419 ILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSV 478
ILAVKAG+V++F+GK +G+ISTTQLFI PDFPEA L+ WF++ GK++ S+SIS+D
Sbjct: 391 ILAVKAGKVNEFSGKSIGSISTTQLFINPDFPEAQSLRAWFDQVGKDSASLSISKDITHG 450
Query: 479 G-RADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVM 537
G + +IRKTVSQI+DEGLG +KPDWIT+ ATI ++K D FCYTACP+MIGDR CNKKV
Sbjct: 451 GPKNEIRKTVSQIRDEGLGRSDKPDWITIRATISFMKTDTFCYTACPLMIGDRQCNKKVT 510
Query: 538 NNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLK 597
+GD RW CDRC+Q ECDYRY+LQ QIQDHTGLTWVTAFQE EEIMG AK+LY+LK
Sbjct: 511 RSGDTRWQCDRCNQEFEECDYRYLLQAQIQDHTGLTWVTAFQEGGEEIMGYPAKELYALK 570
Query: 598 YVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDL 657
Y ++DE+FG++V++ F ++F+LK+KEE + +EQ+VKSTVVKA++ NYS+E+R++LDL
Sbjct: 571 YEQEDDERFGDIVKSRLFNHFVFRLKIKEELYGEEQKVKSTVVKADKVNYSAESRYMLDL 630
Query: 658 MDKL 661
+ K
Sbjct: 631 ISKF 634
>gi|356556324|ref|XP_003546476.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Glycine max]
Length = 637
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/661 (53%), Positives = 465/661 (70%), Gaps = 49/661 (7%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++QV+D+ LV Q QQQR+R++LSD S MLATQ N+ V +G +Q GSVV
Sbjct: 22 PLVQVLDVALV--SNSNNSQQQQQRYRLLLSDAVFSHHAMLATQLNDRVRTGRVQKGSVV 79
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGV 121
+L + C ++NR I+++++++ I+D+ + IG P +P + +V + ++A
Sbjct: 80 QLLDYICTPLKNRKIIVILNMETIMDEFEIIGNP----KPYMDSDIPTVRASDSASADST 135
Query: 122 SLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEF 181
NLP +Y AG + N + +F
Sbjct: 136 V--------------------------ENLPRSYNSNNSSAGQNASHNNTQNF------- 162
Query: 182 SRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAK 241
R P Q P +Y RG V K+E P+RIIPIAALNPY G+W IKARVTAK
Sbjct: 163 ---------RPTIQPPYQPPPLYKGRGPVVKNEAPARIIPIAALNPYQGRWAIKARVTAK 213
Query: 242 GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPA 301
G+LR YNN RGDGKVF FDLLDSDGGEIRVTCFNAV D+FY+ +E GK+Y++S+GSLKPA
Sbjct: 214 GDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYNVIEVGKVYMISKGSLKPA 273
Query: 302 QKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVS 361
QKNFNHL N+ EI L+ +SMV+LC ++D SIPRQQF FRPI+D+E ++NNS++D+IGVV+
Sbjct: 274 QKNFNHLKNEWEILLESSSMVELCPDEDGSIPRQQFSFRPISDIENVDNNSILDVIGVVT 333
Query: 362 YISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILA 421
++P+ ++RKNG ETQ+R L L+D SG SVELTLWG FCN +G +LQ M D+G FPILA
Sbjct: 334 SVNPSVPILRKNGMETQRRILSLKDSSGSSVELTLWGEFCNREGQQLQDMVDAGFFPILA 393
Query: 422 VKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSL-SVGR 480
VK G+V+DF+GK +G+ISTTQLFI PDFPEAH L+EWFE GK++ S+SIS+D + +
Sbjct: 394 VKTGKVNDFSGKSIGSISTTQLFINPDFPEAHSLREWFELVGKDSASLSISKDIIPGALK 453
Query: 481 ADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNG 540
++RKTVSQIKDEGLG +KPDWITV A I++IK D FCYTACP+MIGDR CNKKV G
Sbjct: 454 NEVRKTVSQIKDEGLGRSDKPDWITVRAAILFIKTDTFCYTACPLMIGDRQCNKKVTRLG 513
Query: 541 DGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVD 600
+ RW CDRC+Q ECDYRY+LQ QI D TGL WVTAFQE EEIM SAKDLY LK+ +
Sbjct: 514 NTRWQCDRCNQEFEECDYRYLLQVQILDGTGLAWVTAFQEAGEEIMDYSAKDLYFLKHEE 573
Query: 601 QNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDK 660
Q+DEKFGE++++ F +++F+LK+KEE + DEQ+VK TVVKA++ NYSSE+R++LD + K
Sbjct: 574 QDDEKFGEIIKSRLFNQFMFRLKIKEELYGDEQKVKITVVKADKVNYSSESRYMLDTISK 633
Query: 661 L 661
Sbjct: 634 F 634
>gi|449488185|ref|XP_004157962.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Cucumis sativus]
Length = 623
Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/661 (51%), Positives = 467/661 (70%), Gaps = 62/661 (9%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++QV+D+KL+ + Q+R+ +++SD ++Q MLATQ N++V +G ++ GSV+
Sbjct: 22 PLVQVLDIKLI--------GNAQERYSLLISDAVSAEQAMLATQLNDVVKTGRVKKGSVI 73
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGV 121
+L + C+ I+NR I++V+ L+ II C+ + GNP+S+A
Sbjct: 74 QLIDYVCSPIKNRKIIVVLCLETIILDCE-------------------IIGNPKSSAQSE 114
Query: 122 SLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEF 181
+ A P+ N +P G+G S + NP
Sbjct: 115 NFAQK-------------ATPSV---------NLEQP-AKVGNGHLSAR-----NPVHNV 146
Query: 182 SRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAK 241
A+ P + N G + K+E P+RIIPIAALNPY G+W IKARVTAK
Sbjct: 147 QSFQATVQPPYQPPPNYK------NHGAIIKNEAPARIIPIAALNPYQGRWAIKARVTAK 200
Query: 242 GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPA 301
G+LR YNN +GDGKVF FDLLDSDGGEIRVTCFNAV D+FY +E GK+YL+S+GSLKPA
Sbjct: 201 GDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEVIEVGKVYLISKGSLKPA 260
Query: 302 QKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVS 361
+K+FNHL N+ E+FL+ +S V+LC ++D +IPRQQF F+PI+++E E NS++D+IG+V+
Sbjct: 261 RKDFNHLKNEWEVFLEASSTVELCPDEDDTIPRQQFSFKPISEIENAETNSILDVIGIVT 320
Query: 362 YISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILA 421
I+P+ ++RKNG ETQ+R ++L+D SGRSVELT+WG+FCN +G +LQ + SG+ P+LA
Sbjct: 321 SINPSIPVLRKNGMETQRRVVYLKDASGRSVELTMWGDFCNKEGQKLQEIIYSGLSPVLA 380
Query: 422 VKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSL-SVGR 480
VK+G+VSDF GK +GTIS+TQLFI PD PEAH L+EW++ GKNT S+SIS++ + +
Sbjct: 381 VKSGKVSDFTGKSIGTISSTQLFINPDLPEAHILREWYDGGGKNTTSLSISKEIVPGSAK 440
Query: 481 ADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNG 540
DIRKTVSQIKDEGLG +KPDWITV ATI +IK D+FCYTACP+MIGDR CNKKV +G
Sbjct: 441 NDIRKTVSQIKDEGLGRADKPDWITVKATISFIKTDSFCYTACPLMIGDRQCNKKVTRSG 500
Query: 541 DGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVD 600
+ +W CDRC+Q +CDYRY+LQ QIQDHTGLTWVTAFQE EEI+G+S K+LY LKY +
Sbjct: 501 NSKWVCDRCNQEFEDCDYRYLLQAQIQDHTGLTWVTAFQETGEEILGVSGKELYMLKYEE 560
Query: 601 QNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDK 660
Q+D KFGE++R+ F ++LF+LK+KEE + DEQRVK+TVVKA+R NYSSE++++LDL+ K
Sbjct: 561 QDDVKFGEIIRSKIFDQFLFRLKIKEEVYGDEQRVKNTVVKADRVNYSSESKYMLDLLSK 620
Query: 661 L 661
Sbjct: 621 F 621
>gi|449446612|ref|XP_004141065.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Cucumis sativus]
Length = 694
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/666 (51%), Positives = 470/666 (70%), Gaps = 62/666 (9%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++QV+D+KL+ + Q+R+ +++SD ++Q MLATQ N++V +G ++ GSV+
Sbjct: 22 PLVQVLDIKLI--------GNAQERYSLLISDAVSAEQAMLATQLNDVVKTGRVKKGSVI 73
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGV 121
+L + C+ I+NR I++V+ L+ II C+ + GNP+S+A
Sbjct: 74 QLIDYVCSPIKNRKIIVVLCLETIILDCE-------------------IIGNPKSSAQSE 114
Query: 122 SLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEF 181
+ A P+ N +P G+G S + NP
Sbjct: 115 NFAQK-------------ATPSV---------NLEQP-AKVGNGHLSAR-----NPVHNV 146
Query: 182 SRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAK 241
A+ P + N G + K+E P+RIIPIAALNPY G+W IKARVTAK
Sbjct: 147 QSFQATVQPPYQPPPNYK------NHGAIIKNEAPARIIPIAALNPYQGRWAIKARVTAK 200
Query: 242 GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPA 301
G+LR YNN +GDGKVF FDLLDSDGGEIRVTCFNAV D+FY +E GK+YL+S+GSLKPA
Sbjct: 201 GDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEVIEVGKVYLISKGSLKPA 260
Query: 302 QKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVS 361
+K+FNHL N+ E+FL+ +S V+LC ++D +IPRQQF F+PI+++E E NS++D+IG+V+
Sbjct: 261 RKDFNHLKNEWEVFLEASSTVELCPDEDDTIPRQQFSFKPISEIENAETNSILDVIGIVT 320
Query: 362 YISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILA 421
I+P+ ++RKNG ETQ+R ++L+D SGRSVELT+WG+FCN +G +LQ + SG+ P+LA
Sbjct: 321 SINPSIPVLRKNGMETQRRVVYLKDASGRSVELTMWGDFCNKEGQKLQEIIYSGLSPVLA 380
Query: 422 VKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSL-SVGR 480
VK+G+VSDF GK +GTIS+TQLFI PD PEAH L+EW++ GKNT S+SIS++ + +
Sbjct: 381 VKSGKVSDFTGKSIGTISSTQLFINPDLPEAHILREWYDGGGKNTTSLSISKEIVPGSAK 440
Query: 481 ADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNG 540
DIRKTVSQIKDEGLG +KPDWITV ATI +IK D+FCYTACP+MIGDR CNKKV +G
Sbjct: 441 NDIRKTVSQIKDEGLGRADKPDWITVKATISFIKTDSFCYTACPLMIGDRQCNKKVTRSG 500
Query: 541 DGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVD 600
+ +W CDRC+Q +CDYRY+LQ QIQDHTGLTWVTAFQE EEI+G+SAK+LY LKY +
Sbjct: 501 NSKWVCDRCNQEFEDCDYRYLLQAQIQDHTGLTWVTAFQETGEEILGVSAKELYMLKYEE 560
Query: 601 QNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDK 660
Q+D KFGE++R+ F ++LF+LK+KEE + DEQRVK+TVVKA+R NYSSE+++I +D
Sbjct: 561 QDDVKFGEIIRSKIFDQFLFRLKIKEEVYGDEQRVKNTVVKADRVNYSSESKYISGPLDG 620
Query: 661 LKSGDS 666
++ GD+
Sbjct: 621 IEIGDA 626
>gi|297831712|ref|XP_002883738.1| hypothetical protein ARALYDRAFT_899421 [Arabidopsis lyrata subsp.
lyrata]
gi|297329578|gb|EFH59997.1| hypothetical protein ARALYDRAFT_899421 [Arabidopsis lyrata subsp.
lyrata]
Length = 640
Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/663 (52%), Positives = 470/663 (70%), Gaps = 52/663 (7%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P+LQV+++K++ + Q+ Q+R+R ++SDG +Q M+A Q N+ V SG ++ GS+V
Sbjct: 22 PLLQVLEIKMI----GRSQERSQERYRFLISDGVSAQHAMVAVQLNDRVKSGQVEKGSIV 77
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKP-VPAQRPSSNEQPGSVTGNPQSNATG 120
+L + C+ ++ R +++V++++ I+ + IG P + + + ++P S GN
Sbjct: 78 QLIDYICSDVKGRKLIVVLNMETIVPHSETIGNPTIFGETDTEAQKPLSAVGN------- 130
Query: 121 VSLQHHNNTRVSQLPGDTDAV---PAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNP 177
+P V P A+H + PP G + +N + SF
Sbjct: 131 -------------IPPPNRVVFNEPTAQHSVNRAPPR------GVNIQNPANSTPSF--- 168
Query: 178 RPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKAR 237
RP P Q P+ Y N G + K+E P+R+IPIAALNPY G+W IKAR
Sbjct: 169 RPSVQ-------------PSYQPPASYRNHGPIMKNEAPARVIPIAALNPYQGRWAIKAR 215
Query: 238 VTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGS 297
VTAKG++R YNN +GDGKV+ FDLLDSDGGEIRVTCFNAVAD+FY E GK+YL+S+GS
Sbjct: 216 VTAKGDIRRYNNAKGDGKVYSFDLLDSDGGEIRVTCFNAVADRFYDVTEVGKVYLISKGS 275
Query: 298 LKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLI 357
LKPAQKN+NHL N+ EIFL+ TS V+LC ++D SIPRQQF FRPI+D+E ENN+++D+I
Sbjct: 276 LKPAQKNYNHLKNEWEIFLESTSTVELCPDEDGSIPRQQFSFRPISDIENAENNTILDVI 335
Query: 358 GVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVF 417
GVV+ ++P+ ++RKNG ET +R L+L+D SG++VE+TLWG FCN DG +L+ M DS
Sbjct: 336 GVVTSVNPSVPILRKNGMETHRRILNLKDESGKAVEVTLWGEFCNRDGRQLEEMVDSAFH 395
Query: 418 PILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSL- 476
P+LA+KAG+VSDF+GK VGTIS+TQLFI PDFPEAH+L+ WF+ GK+T S SISRD++
Sbjct: 396 PVLAIKAGKVSDFSGKSVGTISSTQLFINPDFPEAHKLRTWFDHGGKDTASFSISRDTMP 455
Query: 477 -SVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKK 535
V R +IRK+VSQIK+EGLG +KPDWITV ATI +IK D+FCYTACP+MIGD+ CNKK
Sbjct: 456 GGVSRNEIRKSVSQIKEEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDKQCNKK 515
Query: 536 VMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYS 595
V +G RW CDRC+Q ECDYRY+LQ QIQDHTGLTW+TAFQE EEIMG AK LY+
Sbjct: 516 VTRSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGLTWITAFQETGEEIMGCPAKKLYA 575
Query: 596 LKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
LKY + +E+F E+VR+ F +Y+ KLK+KEE++ DEQRVK TVVK ++ NY+SE++++L
Sbjct: 576 LKYELEKEEEFAEIVRDRLFHQYMLKLKIKEESYGDEQRVKMTVVKVDKMNYTSESKYML 635
Query: 656 DLM 658
DL+
Sbjct: 636 DLL 638
>gi|15225129|ref|NP_178690.1| replication factor A1 [Arabidopsis thaliana]
gi|4584356|gb|AAD25150.1| putative replication protein A1 [Arabidopsis thaliana]
gi|26452416|dbj|BAC43293.1| putative replication protein A1 [Arabidopsis thaliana]
gi|29029004|gb|AAO64881.1| At2g06510 [Arabidopsis thaliana]
gi|330250916|gb|AEC06010.1| replication factor A1 [Arabidopsis thaliana]
Length = 640
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/663 (51%), Positives = 466/663 (70%), Gaps = 52/663 (7%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P+LQV+++K++ + Q+ Q+R+R ++SDG +Q M+A Q N+ V SG + GS+V
Sbjct: 22 PLLQVLEIKMI----GRSQERSQERYRFLISDGVSAQHAMVAVQLNDRVKSGQFEKGSIV 77
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKP-VPAQRPSSNEQPGSVTGNPQSNATG 120
+L + C+ ++ R +++V++++ I+ + + IG P + + + ++ S TGN
Sbjct: 78 QLIDYICSDVKGRKLIVVLNMETIVQQSETIGNPTIFGETDTEAQKTFSGTGN------- 130
Query: 121 VSLQHHNNTRVSQLPGDTDAV---PAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNP 177
+P V P +H + PP G + +N + SF
Sbjct: 131 -------------IPPPNRVVFNEPMVQHSVNRAPPR------GVNIQNQANNTPSF--- 168
Query: 178 RPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKAR 237
RP P Q P+ Y N G + K+E P+R+IPIAALNPY G+W IKAR
Sbjct: 169 RPSVQ-------------PSYQPPASYRNHGPIMKNEAPARVIPIAALNPYQGRWAIKAR 215
Query: 238 VTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGS 297
VTAKG++R YNN +GDGKVF FDLLD DGGEIRVTCFNA+ D+FY E GK+YL+S+GS
Sbjct: 216 VTAKGDIRRYNNAKGDGKVFSFDLLDYDGGEIRVTCFNALVDRFYDVTEVGKVYLISKGS 275
Query: 298 LKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLI 357
LKPAQKNFNHL N+ EIFL+ TS V+LC ++D SIP+QQF FRPI+D+E ENN+++D+I
Sbjct: 276 LKPAQKNFNHLKNEWEIFLESTSTVELCPDEDGSIPKQQFSFRPISDIENAENNTILDVI 335
Query: 358 GVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVF 417
GVV+ ++P+ ++RKNG ET +R L+L+D SG++VE+TLWG FCN DG +L+ M DS
Sbjct: 336 GVVTSVNPSVPILRKNGMETHRRILNLKDESGKAVEVTLWGEFCNRDGRQLEEMVDSAFH 395
Query: 418 PILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSL- 476
P+LA+KAG+VSDF+GK VGTIS+TQLFI PDFPEAH+L+ WF+ GK+T S SISRD++
Sbjct: 396 PVLAIKAGKVSDFSGKSVGTISSTQLFINPDFPEAHKLRTWFDYGGKDTASFSISRDTMP 455
Query: 477 -SVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKK 535
V R +IRK VSQIK+EGLG +KPDWITV ATI +IK D+FCYTACP+MIGD+ CNKK
Sbjct: 456 GGVSRNEIRKNVSQIKEEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDKQCNKK 515
Query: 536 VMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYS 595
V +G RW CDRC+Q ECDYRY+LQ QIQDHTGLTW+TAFQE EEIMG AK LY+
Sbjct: 516 VTRSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGLTWITAFQETGEEIMGCPAKKLYA 575
Query: 596 LKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
+KY + +E+F E+VR+ F +Y+ KLK+KEE++ DEQRVK TVVK ++ NY+SE++++L
Sbjct: 576 MKYELEKEEEFAEIVRDRLFHQYMLKLKIKEESYGDEQRVKMTVVKVDKVNYTSESKYML 635
Query: 656 DLM 658
DL+
Sbjct: 636 DLL 638
>gi|42570719|ref|NP_973433.1| replication factor A1 [Arabidopsis thaliana]
gi|330250915|gb|AEC06009.1| replication factor A1 [Arabidopsis thaliana]
Length = 617
Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/664 (51%), Positives = 464/664 (69%), Gaps = 55/664 (8%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
MPVL++ K++ + Q+ Q+R+R ++SDG +Q M+A Q N+ V SG + GS+
Sbjct: 1 MPVLEI---KMI----GRSQERSQERYRFLISDGVSAQHAMVAVQLNDRVKSGQFEKGSI 53
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKP-VPAQRPSSNEQPGSVTGNPQSNAT 119
V+L + C+ ++ R +++V++++ I+ + + IG P + + + ++ S TGN
Sbjct: 54 VQLIDYICSDVKGRKLIVVLNMETIVQQSETIGNPTIFGETDTEAQKTFSGTGN------ 107
Query: 120 GVSLQHHNNTRVSQLPGDTDAV---PAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSN 176
+P V P +H + PP G + +N + SF
Sbjct: 108 --------------IPPPNRVVFNEPMVQHSVNRAPPR------GVNIQNQANNTPSF-- 145
Query: 177 PRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKA 236
RP P Q P+ Y N G + K+E P+R+IPIAALNPY G+W IKA
Sbjct: 146 -RPSVQ-------------PSYQPPASYRNHGPIMKNEAPARVIPIAALNPYQGRWAIKA 191
Query: 237 RVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG 296
RVTAKG++R YNN +GDGKVF FDLLD DGGEIRVTCFNA+ D+FY E GK+YL+S+G
Sbjct: 192 RVTAKGDIRRYNNAKGDGKVFSFDLLDYDGGEIRVTCFNALVDRFYDVTEVGKVYLISKG 251
Query: 297 SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDL 356
SLKPAQKNFNHL N+ EIFL+ TS V+LC ++D SIP+QQF FRPI+D+E ENN+++D+
Sbjct: 252 SLKPAQKNFNHLKNEWEIFLESTSTVELCPDEDGSIPKQQFSFRPISDIENAENNTILDV 311
Query: 357 IGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGV 416
IGVV+ ++P+ ++RKNG ET +R L+L+D SG++VE+TLWG FCN DG +L+ M DS
Sbjct: 312 IGVVTSVNPSVPILRKNGMETHRRILNLKDESGKAVEVTLWGEFCNRDGRQLEEMVDSAF 371
Query: 417 FPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSL 476
P+LA+KAG+VSDF+GK VGTIS+TQLFI PDFPEAH+L+ WF+ GK+T S SISRD++
Sbjct: 372 HPVLAIKAGKVSDFSGKSVGTISSTQLFINPDFPEAHKLRTWFDYGGKDTASFSISRDTM 431
Query: 477 --SVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNK 534
V R +IRK VSQIK+EGLG +KPDWITV ATI +IK D+FCYTACP+MIGD+ CNK
Sbjct: 432 PGGVSRNEIRKNVSQIKEEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDKQCNK 491
Query: 535 KVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLY 594
KV +G RW CDRC+Q ECDYRY+LQ QIQDHTGLTW+TAFQE EEIMG AK LY
Sbjct: 492 KVTRSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGLTWITAFQETGEEIMGCPAKKLY 551
Query: 595 SLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFI 654
++KY + +E+F E+VR+ F +Y+ KLK+KEE++ DEQRVK TVVK ++ NY+SE++++
Sbjct: 552 AMKYELEKEEEFAEIVRDRLFHQYMLKLKIKEESYGDEQRVKMTVVKVDKVNYTSESKYM 611
Query: 655 LDLM 658
LDL+
Sbjct: 612 LDLL 615
>gi|168050100|ref|XP_001777498.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671116|gb|EDQ57673.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 632
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/654 (50%), Positives = 450/654 (68%), Gaps = 43/654 (6%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQ++D++ Q Q +RFR+VLSDG QQ MLATQ NE V + L GS+V
Sbjct: 22 PVLQIVDVR-----QIGNSQTTTERFRLVLSDGVHLQQAMLATQLNEKVKNNLAVKGSIV 76
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGV 121
+L ++ CN +QNR I+IV++++++ K + IG P + + A G
Sbjct: 77 QLLEYICNTVQNRKIIIVLNMEIVETKAEIIG------------DPKHLIAGGEHQAPGP 124
Query: 122 SLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEF 181
+ Q P + P++ V +N +GS + Q P+ +
Sbjct: 125 GPGPGPGSLQPQQPPPRISTPSSATVSAN-----------SGSRAGYGQQGQ---PQNSY 170
Query: 182 SRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAK 241
RP A+ Y +P +Y NRG + K+E P+RIIPIAALNPY G+WTIKARVT+K
Sbjct: 171 GRPMAA---------YQPAP-VYGNRGPIVKNEAPARIIPIAALNPYQGRWTIKARVTSK 220
Query: 242 GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPA 301
GE+R ++N +G+GKVF FD+LD+DGGEIR TCFN V DQF+ ++E GK+YL+S+GSLK A
Sbjct: 221 GEIRRFHNAKGEGKVFSFDMLDADGGEIRATCFNNVVDQFHDRIEVGKVYLISKGSLKAA 280
Query: 302 QKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVS 361
QKNFNHL ND EIFL+ S ++ CY++D+SIP+Q + FRPI++V +ENN+++D+IGVV
Sbjct: 281 QKNFNHLKNDWEIFLESQSTIEPCYDEDSSIPQQHYDFRPISEVATLENNAMIDIIGVVM 340
Query: 362 YISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILA 421
I+PT ++ RKNG ETQKR+L L+DMS RSVELT+WGNFCN +G LQ +CDSG P+LA
Sbjct: 341 SITPTVTITRKNGLETQKRSLQLKDMSNRSVELTMWGNFCNKEGQELQDLCDSGANPVLA 400
Query: 422 VKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRA 481
VKAGRVSDF+GK VGTIS+TQL I PD PEA ++++WF +EG N+ +V +SR+ GR
Sbjct: 401 VKAGRVSDFSGKSVGTISSTQLVINPDHPEARKVRDWFNREGMNSTTVFLSREGGGGGRL 460
Query: 482 DIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGD 541
+ RKTV+ IKDEGLG +KPDWIT+ AT+ YIK +NFCY+ACP+ + + C KKV NNGD
Sbjct: 461 EQRKTVAAIKDEGLGRGDKPDWITIRATVFYIKPENFCYSACPLEVNGKQCMKKVTNNGD 520
Query: 542 GRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQ 601
G W CDRCD+SV ECDYRY+L Q+QDHTG TW+T FQE EE+M +AK+L+ +
Sbjct: 521 GTWRCDRCDRSVPECDYRYLLSIQVQDHTGPTWITVFQETGEELMHHTAKELFL--WSQD 578
Query: 602 NDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
++F E ++ TF K++FKLKVKEET++DEQR KST+VK + ++ SE++ +L
Sbjct: 579 EPQRFSEAIQKLTFMKHIFKLKVKEETYNDEQRTKSTLVKVDPMDWISESKLML 632
>gi|357134970|ref|XP_003569087.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Brachypodium distachyon]
Length = 945
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/863 (42%), Positives = 526/863 (60%), Gaps = 66/863 (7%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
PV+QV D+K+V +K QQQ +R+RM++SDG SQQ MLAT N LV G L+ GS+
Sbjct: 25 FPVVQVGDVKIVNTKGGPQQQ--SERYRMLISDGVNSQQSMLATPLNALVKDGTLRAGSI 82
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKP-------VPAQR----PSSNEQ--P 107
V L + CN IQNR I+IV LDV+ +C IG P +P ++ P+S Q
Sbjct: 83 VHLVETMCNTIQNRRIIIVTKLDVLQTECPMIGTPKMCQMKILPQEQEPNLPASAAQTYS 142
Query: 108 GSVTGNPQSNATGVS--LQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSG 165
GS +GNP + V+ ++ N+ P +G + P G G
Sbjct: 143 GSYSGNPGMLGSSVAPMVEQAANSLSYGGPYKGIHGTVGSSIGRAVEPGPNNVLSGGSYG 202
Query: 166 SFSNQSASFSN-PRPEFSRPYASN---------------------YARTPQAPYMQSPSM 203
+ Q+ +N +P+ P S+ Y R Q Y Q P
Sbjct: 203 TVPAQNTMNANVVQPDSQLPLLSSHQNQRFAIPGAGRGFGPPGNIYGRPAQPSYQQPPPA 262
Query: 204 YANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLD 263
Y N G V K+E P R+ PI+ALNPY WTIKARVTAK + H+ N G G VF+FDLLD
Sbjct: 263 YRNSGPVAKNEAPPRVTPISALNPYQTTWTIKARVTAKSRVTHFINASGPGTVFNFDLLD 322
Query: 264 SDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQ 323
+ GGEIR CF A DQFY+ +E K+YL+SRG+++PAQK FN L+ND ++ LD+++ ++
Sbjct: 323 AHGGEIRAKCFKAAVDQFYNLIEVDKVYLISRGAIRPAQKKFNPLNNDYDLTLDVSTSIE 382
Query: 324 LCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLH 383
+C DD+SIPRQQF+FR I+++ M+ S+VDL+GVV+ +SPT LM+K+G ET+KR L
Sbjct: 383 ICSGDDSSIPRQQFNFRQISEIANMDGGSMVDLLGVVTSVSPTVPLMKKDGNETKKRNLQ 442
Query: 384 LRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQL 443
L+DMSG SVE+T WG+FC+ +G +LQ +CDSG P+L +K+GRV+DFNGK VGTIS++ +
Sbjct: 443 LKDMSGCSVEITFWGDFCDAEGQQLQSLCDSGSSPMLVLKSGRVNDFNGKSVGTISSSLI 502
Query: 444 FIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDW 503
I PDFP+A RL++W+ EGKN S+S ++ GR D+RKT+++IK E LG +KP W
Sbjct: 503 KINPDFPDAERLRQWYITEGKNAACSSLSVATM--GRTDVRKTIAEIKGENLGQSDKPAW 560
Query: 504 ITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQ 563
ITV +I +I D FCY AC + + R CNKKV NNGDG W+CD+C+QS C+YRY+L
Sbjct: 561 ITVIGSIFHIANDPFCYPACTMQVNGRQCNKKVTNNGDGMWYCDKCEQSSPNCEYRYLLN 620
Query: 564 FQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLK 623
Q+QDHTG T+ AFQE ++I+G++A++L+ +K+ +Q+D +F E+++ A +L KLK
Sbjct: 621 CQMQDHTGSTYCNAFQEAGKDIIGVTAQELFRIKHEEQDDVQFAEIMQRARHQLFLLKLK 680
Query: 624 VKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSGDSTSFALKAENIIPKPEMT 683
VKEE ++DE RVK T+ KAE+ + + RF+L ++D+L L ++ P +
Sbjct: 681 VKEEIYNDEARVKYTIFKAEKLD---DPRFLLGIIDRL---------LVEDDAGSTPGVN 728
Query: 684 YTGTGNIGSRQTAPVVANYVGNNSNAGAASGLLANQMGQYGNQYSGSRLPAAGTSAAR-- 741
+ N G + + NN+ A G NQ GQ + +R+P + A R
Sbjct: 729 HAAAANAGFTNSEAGQSVVTSNNTYAMNMGG--PNQFGQQASL--SARVPTT-SRATRYA 783
Query: 742 QSCSSCGAVGHSSMNCPSIMSG---PGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWA 798
Q+CS CG+ GH++ NCP+ M P S G ++ SS G A+S C+KC++ GH++
Sbjct: 784 QTCSVCGSNGHNAQNCPATMDDMHQPAPSVGFTASSYGSSAGGNASSGLCFKCNQPGHFS 843
Query: 799 RDCPSLNAAPPAYGSSGIGISAA 821
RDCP L +YG+S + +A+
Sbjct: 844 RDCPGLTT---SYGNSAVNANAS 863
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 72/151 (47%), Gaps = 21/151 (13%)
Query: 693 RQTAPVV---ANYVGNNSNAGAASGLL--ANQMGQYGNQYSGSRLP----AAGTSAARQS 743
Q AP V A+ G+++ A+SGL NQ G + G A +A+
Sbjct: 807 HQPAPSVGFTASSYGSSAGGNASSGLCFKCNQPGHFSRDCPGLTTSYGNSAVNANASSNL 866
Query: 744 CSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPS 803
C C GH S +CP+ S S+GG +SGA + C+KC++ GH+ARDCP+
Sbjct: 867 CFKCNQPGHYSRDCPAQGSSYPSSAGG------NSGANL-----CFKCNQPGHYARDCPA 915
Query: 804 LNAAPPAYGSSGIGISAAGYRGAPRQQVGGF 834
A P + + G SAA G RQ VG F
Sbjct: 916 QAAGAPQHPAYGNNASAAS-GGYSRQYVGSF 945
>gi|168046036|ref|XP_001775481.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673151|gb|EDQ59678.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 626
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/654 (50%), Positives = 449/654 (68%), Gaps = 49/654 (7%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQ++D++ Q Q +RFR+VLSDG QQ MLATQ NE V + L GS+V
Sbjct: 22 PVLQIVDIR-----QIGNAQTTTERFRLVLSDGVHLQQAMLATQLNEKVKNNLAVKGSIV 76
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGV 121
+L ++ CN +QNR I+IV++++++ K D IG P + + A
Sbjct: 77 QLLEYICNTVQNRKIIIVLNMEIVESKADIIG------------DPKHLVAGGEHQAGPG 124
Query: 122 SLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEF 181
+ SQL + ++P N +A+
Sbjct: 125 PGPGPGS---SQLQQPSPSLP-------------------------KNTTANGVGVGYGQ 156
Query: 182 SRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAK 241
+ Y R P A Y +P +Y NRG + K+E P+RIIPIAALNPY G+WTIKAR+TAK
Sbjct: 157 QGQQQNAYGR-PMAAYQPAP-VYGNRGPIVKNEAPARIIPIAALNPYQGRWTIKARITAK 214
Query: 242 GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPA 301
GE+R ++N +G+GKVF FD+LD+DGGEIR TCFN V DQF+ ++E GK+YL+S+GSLK A
Sbjct: 215 GEIRRFHNAKGEGKVFSFDMLDADGGEIRATCFNNVVDQFHERIEVGKVYLISKGSLKAA 274
Query: 302 QKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVS 361
QKNFNHL ND EIFL+ + ++ CYE+D+SIP+Q + F+PI++VE +ENN+++D++GVV
Sbjct: 275 QKNFNHLKNDWEIFLESQTTIEPCYEEDSSIPQQHYDFKPISEVEALENNAMIDIVGVVM 334
Query: 362 YISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILA 421
I+PT ++MRKNG ETQKR+L ++DMS RSVELT+WG+FC+ +G LQ +CDSG P+LA
Sbjct: 335 SINPTTTIMRKNGLETQKRSLQMKDMSNRSVELTMWGSFCSKEGQELQDLCDSGANPVLA 394
Query: 422 VKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRA 481
VKAGRVSDF+GK VGTIS+TQL I PD PEA R+++WFE+EGKNT +VS+SR+ GR
Sbjct: 395 VKAGRVSDFSGKSVGTISSTQLAINPDHPEARRVRDWFEREGKNTATVSLSREGGGGGRL 454
Query: 482 DIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGD 541
+ RKTV+ IKDEGLG +KPDWITV AT+ YIK +NFCY ACP+ + + C KKV NNGD
Sbjct: 455 EQRKTVAAIKDEGLGRGDKPDWITVRATVFYIKPENFCYPACPLEVNGKQCMKKVTNNGD 514
Query: 542 GRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQ 601
G W CDRCD+SV ECDYRY+L Q+QDHTG TW+T FQE EE+M +AK+L+ +
Sbjct: 515 GTWRCDRCDRSVPECDYRYLLSIQVQDHTGPTWITVFQETGEELMQHTAKELFL--WSQD 572
Query: 602 NDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
++F E ++ TFTK++FKLKVKEET++DEQR KST+VK +R ++ SE + +L
Sbjct: 573 EPQRFSEAIQKLTFTKHVFKLKVKEETYNDEQRTKSTLVKVDRMDWVSENKLML 626
>gi|302774432|ref|XP_002970633.1| hypothetical protein SELMODRAFT_441216 [Selaginella moellendorffii]
gi|300162149|gb|EFJ28763.1| hypothetical protein SELMODRAFT_441216 [Selaginella moellendorffii]
Length = 815
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/709 (46%), Positives = 470/709 (66%), Gaps = 57/709 (8%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++QV+D+K + S Q + Q+R+R+VLSDG+ QQ MLATQ NE+V +G L S+V
Sbjct: 23 PIVQVLDVKQIGSNQ-----NVQERYRLVLSDGTAVQQAMLATQLNEVVKNGTLMKSSIV 77
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCD----PIGKPVPAQRPSSNEQPGSVT------ 111
+L ++ CN +++R IVIV++LDV++ + P G V PS N+ +V+
Sbjct: 78 KLQEYICNTVKDRKIVIVLNLDVLVSNAEMSDQPPGAVVDPPGPSGNQTASAVSSYGGRP 137
Query: 112 ------GNPQSNATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNL-----PPNYF---- 156
G + + + T P +T+++ GS++ P F
Sbjct: 138 AEVSSFGGRPTEVSSFGGRQAEATSFGGRPTETNSLGGRAAEGSSIGGRTPEPGSFGGQA 197
Query: 157 KPEVG-----AGSGSFSNQSASFSNP--RPEFSRPYASNYARTPQAPYMQSPSMYA---- 205
P V A GSF Q+ +P RP +R Y P +S YA
Sbjct: 198 TPAVSPYGRPAEPGSFGGQATPAVSPYGRPAEARRETVAYGGRP----AESIGSYAPNPP 253
Query: 206 --------NRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVF 257
NRG + ++E P ++PIAALNPY G+WTIKAR+T+K +LR +NN RGDG+VF
Sbjct: 254 YGPPPTYTNRGPIARNEGPPGLVPIAALNPYHGRWTIKARITSKSDLRRFNNARGDGRVF 313
Query: 258 HFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLD 317
FDLLD++GGEIRVTCFN VAD+FY + + G++Y+VS+GSL+ AQK FNHL ND EI +
Sbjct: 314 SFDLLDAEGGEIRVTCFNNVADEFYERAQVGRLYMVSKGSLRAAQKQFNHLKNDWEIMFE 373
Query: 318 MTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTET 377
S++ C ED +S+P+Q F F+ ++++E + NN++VD IGVV ++ T ++MRKNGTET
Sbjct: 374 KDSVLDPCPED-SSVPQQVFDFKQVSEIENLPNNAMVDAIGVVVGVNQTTTIMRKNGTET 432
Query: 378 QKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGT 437
Q+RTL LRD SG+SVE+T+WGNFC +G LQ +CDSG PILA+KAGRVSDF+GK +GT
Sbjct: 433 QRRTLQLRDRSGKSVEITMWGNFCTQEGQHLQELCDSGQSPILAIKAGRVSDFSGKSLGT 492
Query: 438 ISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSL-SVGRADIRKTVSQIKDEGLG 496
IS+T+ I PD PEA L+ WFE+EG++ Q+ SISR+ GR + RKTVSQIKDEGLG
Sbjct: 493 ISSTRFQINPDHPEARSLQLWFEREGRHAQAQSISREGAGGGGRTENRKTVSQIKDEGLG 552
Query: 497 TKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVEC 556
EKPD++T+ ATI +IK D+FCYTACP+ IGDR C+KKV NNGDG W C+RCD++V EC
Sbjct: 553 RSEKPDFVTIRATIHFIKTDSFCYTACPLQIGDRQCSKKVTNNGDGTWRCERCDRTVPEC 612
Query: 557 DYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFT 616
DYRY+L Q+ DHTG TW+T FQE AEE++G+ AKDL+ K D +F + + + FT
Sbjct: 613 DYRYMLSIQVMDHTGATWLTGFQEAAEELLGVKAKDLFMWKQEDNG--RFLDHIASIQFT 670
Query: 617 KYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSGD 665
++ FK+++KEE+F+DEQRVK + +AE+ ++ +E+++++D + KL+ G+
Sbjct: 671 QHHFKVRIKEESFNDEQRVKVNIQRAEKLDFVAESKYMIDAIGKLRRGE 719
>gi|326511146|dbj|BAJ87587.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 940
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/872 (43%), Positives = 512/872 (58%), Gaps = 69/872 (7%)
Query: 2 PVLQVMDLKLVVSKQ----QQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQI 57
PVLQV DL+ VV+K QH + RFRM+LSDG SQQ ML T N+L+ G L++
Sbjct: 27 PVLQVADLRPVVAKNTTAAAAAAQHSE-RFRMLLSDGVHSQQSMLGTGLNDLIKDGTLRV 85
Query: 58 GSVVRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKP--------------VPAQRPSS 103
GS+V LT TCN IQ R IVIV+ L+V+ +C IG P +PA +
Sbjct: 86 GSIVHLTDMTCNTIQKRRIVIVVKLEVLQSECAKIGTPKVYEKSLPEGQEPSLPANAAQT 145
Query: 104 NEQPGSVTGNPQSNATGVS---LQHHNNTRVSQL----PGDTDAV-----PAARHV---- 147
N GS +G P + V+ Q NN + PG ++ P A +V
Sbjct: 146 NS--GSYSGGPGMLGSTVAPKVEQIGNNLSYGRANNRGPGVDSSICQPVQPGANNVLTGG 203
Query: 148 --GSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYA 205
G+ N V S NQS++ F + Y R Q Y Q P +
Sbjct: 204 TYGTMSAQNTMNAYV-VQPNSHQNQSSALPGTGGGFGP-PGNIYGRPAQPSYQQPPPPHR 261
Query: 206 NRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSD 265
N G K+E SR+IPI+ALNPY WTIKARVTAK +RH+N +G GKVF FDLLD+
Sbjct: 262 NSGPAAKNEAASRVIPISALNPYQRTWTIKARVTAKAHVRHFNKAKGSGKVFSFDLLDAQ 321
Query: 266 GGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLC 325
G EIR TCF+A DQFY +E K+YLVSRGSLKPA K FN L+ND E+ L+ +S +++C
Sbjct: 322 GVEIRATCFDAAVDQFYDVIEVDKVYLVSRGSLKPANKRFNPLNNDYEMNLEPSSSIEVC 381
Query: 326 YEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLR 385
DD+SIP+ QF+FR I+++ M+ ++ +DL+GVV+ + P+ ++M KNG ETQKR L L+
Sbjct: 382 SGDDSSIPKLQFNFRQISEIANMDKDTTIDLLGVVTSVRPSFTVMLKNGGETQKRVLQLK 441
Query: 386 DMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFI 445
DMSG SV++T WGNFC+ +G +LQ +CDSG+ PILA+K+GRV +FNGK V T +++ L I
Sbjct: 442 DMSGCSVDITFWGNFCDAEGQQLQSLCDSGLNPILALKSGRVGEFNGKTVSTTNSSLLKI 501
Query: 446 EPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWIT 505
PDF EA RL +W+ EGK S+S + S+GR D+RK +QIKDE LG EKPDWIT
Sbjct: 502 NPDFAEAKRLGQWYITEGKIAACTSLSGEMSSMGRTDVRKKTAQIKDERLGQSEKPDWIT 561
Query: 506 VSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQ 565
V I I DNFCY AC + + CNKKV+NNGDG W C++C+QS C+YRY+L
Sbjct: 562 VQGAISQIYTDNFCYPACTTEVNGKRCNKKVINNGDGMWLCEKCEQSSETCEYRYLLSCH 621
Query: 566 IQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVK 625
IQDHTG T+ TAFQE +EI+G+ A+DL+ +K+ +Q+D +F E+++ F +YLFKLKVK
Sbjct: 622 IQDHTGFTYATAFQESGQEIVGLPAQDLFRIKHEEQDDVRFAEIIQQVRFQQYLFKLKVK 681
Query: 626 EETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL----KSGDS----------TSFA- 670
EE ++DE RVK VVKAE Y+ + E+RF+L +D L SG S T F
Sbjct: 682 EEVYNDEPRVKCNVVKAEIYDPAKESRFLLGAIDSLLVEDASGSSPGLNGGPAVNTGFIN 741
Query: 671 LKAENIIPKPEMTYT----GTGNIGSRQTAPVVANYVGNNSNAGAASGLLANQMG----Q 722
+A+ +P +Y G G + +A + + A + G AN G
Sbjct: 742 SEADQSVPASNNSYAMNMGGPNQFGQQFSASHGMPSALSATPAAGSGGFAANSYGPPAAS 801
Query: 723 YGNQYSGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGI 782
G + S PAAG+ + A PS + P SGG ANS+ A
Sbjct: 802 RGMPTAPSVTPAAGSGGFVANSYGPPAASRGMPTAPS--ATPAAGSGGFAANSYGPPAAN 859
Query: 783 ATSSECYKCHKTGHWARDCPSLNAAPPAYGSS 814
A+S C+KC++ GH++RDCP AAP YGSS
Sbjct: 860 ASSGLCFKCNQPGHFSRDCPG-QAAP--YGSS 888
>gi|115449015|ref|NP_001048287.1| Os02g0776800 [Oryza sativa Japonica Group]
gi|46805512|dbj|BAD16963.1| replication protein A 70kDa [Oryza sativa Japonica Group]
gi|46806154|dbj|BAD17384.1| replication protein A 70kDa [Oryza sativa Japonica Group]
gi|113537818|dbj|BAF10201.1| Os02g0776800 [Oryza sativa Japonica Group]
gi|125583873|gb|EAZ24804.1| hypothetical protein OsJ_08582 [Oryza sativa Japonica Group]
gi|215701492|dbj|BAG92916.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215715207|dbj|BAG94958.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 656
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/674 (48%), Positives = 462/674 (68%), Gaps = 60/674 (8%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQ+++L+ V + + +RFR V+SDG+ + + A Q ++ SG L+ GS+V
Sbjct: 23 PVLQIVELRGV--QVNGAGVTRGERFRAVVSDGTAASSALFAAQLSDHARSGALRRGSIV 80
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGV 121
+L+++ N + R I+++++L+V++ +C+ IG P S TG+P N T
Sbjct: 81 QLSEYVINEVGPRRIIVILNLEVLVSECEIIGNPTAL----------SETGSPIPNPT-- 128
Query: 122 SLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEF 181
RV Q G P+ G +G+ SN + S+ P F
Sbjct: 129 --------RVEQFNG--------------------APQYGLMAGNSSNTTTKPSDNVPLF 160
Query: 182 SRPYA---SNYARTP-----------QAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNP 227
A SN+A P Q Y +P+ Y N G + K+E P+RIIPI+ALNP
Sbjct: 161 QNSMAGNSSNFATRPSDKVPVFQPTVQPSYRPAPN-YKNHGAIMKNEAPARIIPISALNP 219
Query: 228 YMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEA 287
Y G+W IKARVTAKG++R Y+N +GDGKVF FDLLDSDGGEIRVTCFNA+ D+FY VE
Sbjct: 220 YQGRWAIKARVTAKGDIRRYHNAKGDGKVFSFDLLDSDGGEIRVTCFNALLDRFYEVVEV 279
Query: 288 GKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEG 347
GK+Y+VSRG+L+PAQKN+NHL+N+ EI L+ S V LC ++++SIP Q+F FRPIN++E
Sbjct: 280 GKVYVVSRGNLRPAQKNYNHLNNEWEILLENGSTVDLCPDENSSIPTQRFDFRPINEIED 339
Query: 348 MENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLR 407
+NN+++D+IGVV+ ++P ++ RKNG ETQKRT++L+DMSGRSVE+T+WG+FCN +G +
Sbjct: 340 AQNNAILDIIGVVTSVNPCTTIQRKNGMETQKRTMNLKDMSGRSVEVTMWGDFCNREGSQ 399
Query: 408 LQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQ 467
LQ M + G+FP+LAVKAG+VSDF+GK VGTIS+TQLFI PD EAH L++WF+ G++
Sbjct: 400 LQGMVERGIFPVLAVKAGKVSDFSGKSVGTISSTQLFINPDSAEAHSLRQWFDSGGRDAS 459
Query: 468 SVSISRD-SLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIM 526
+ SISRD + R +IRKTV+QIKDEGLG +KPDWITV AT+++ K ++F YTACP M
Sbjct: 460 TQSISRDITPGASRNEIRKTVAQIKDEGLGMGDKPDWITVKATVIFFKNESFFYTACPNM 519
Query: 527 IGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM 586
IGDR CNKKV + +G W CD+CD+ ECDYRY+LQFQIQDH+G WVTAFQE +E++
Sbjct: 520 IGDRQCNKKVTKSTNGNWTCDKCDREFEECDYRYLLQFQIQDHSGTAWVTAFQEAGQELL 579
Query: 587 GMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYN 646
G SA +L +LK ++ D +F + + N F +YL +LKVKEE++ DE++VK+T VK E+ +
Sbjct: 580 GCSATELNALK--EREDPRFADTMLNCLFQEYLLRLKVKEESYGDERKVKNTAVKVEKVD 637
Query: 647 YSSETRFILDLMDK 660
S E++F+LDL+ K
Sbjct: 638 PSGESKFLLDLISK 651
>gi|125541337|gb|EAY87732.1| hypothetical protein OsI_09147 [Oryza sativa Indica Group]
Length = 658
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/674 (48%), Positives = 460/674 (68%), Gaps = 60/674 (8%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQ+++L+ V + + +RFR V+SDG+ + + A Q ++ SG L+ GS+V
Sbjct: 25 PVLQIVELRGV--QVNGAGVTRGERFRAVVSDGTAASSALFAAQLSDHARSGALRRGSIV 82
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGV 121
+L+++ N + R I+++++L+V++ +C+ IG P S TG+P N T
Sbjct: 83 QLSEYVINDVGPRRIIVILNLEVLVSECEIIGNPTAL----------SETGSPIPNPT-- 130
Query: 122 SLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEF 181
RV Q G P+ G +G+ SN + S+ P F
Sbjct: 131 --------RVEQFNG--------------------APQYGLMAGNSSNTTTKPSDNVPLF 162
Query: 182 SRPYA---SNYARTP-----------QAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNP 227
A SN+A P Q Y +P+ Y N G + K+E P+RIIPI+ALNP
Sbjct: 163 QNSMAGNSSNFATRPSDKVPVFQPTVQPSYRPAPN-YKNHGAIMKNEAPARIIPISALNP 221
Query: 228 YMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEA 287
Y G+W IKARVTAKG++R Y+N +GDGKVF FDLLDSDGGEIRVTCFNA+ D+FY VE
Sbjct: 222 YQGRWAIKARVTAKGDIRRYHNAKGDGKVFSFDLLDSDGGEIRVTCFNALLDRFYEVVEV 281
Query: 288 GKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEG 347
GK+Y+VSRG+L+PAQKN+NHL+N+ EI L+ S V LC ++D+SIP Q+F FRPIN++E
Sbjct: 282 GKVYVVSRGNLRPAQKNYNHLNNEWEILLENGSTVDLCPDEDSSIPTQRFDFRPINEIED 341
Query: 348 MENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLR 407
+NN+++D+IGVV+ ++P ++ RKNG ETQKRT++L+DMSGRSVE+T+WG+ CN +G +
Sbjct: 342 AQNNAILDIIGVVTSVNPCTTIQRKNGMETQKRTMNLKDMSGRSVEVTMWGDLCNREGSQ 401
Query: 408 LQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQ 467
LQ M + G+FP+LAVKAG+VSDF+GK VGTIS+TQLFI PD EAH L++WF+ G++
Sbjct: 402 LQGMVERGIFPVLAVKAGKVSDFSGKSVGTISSTQLFINPDSAEAHSLRQWFDSGGRDAS 461
Query: 468 SVSISRD-SLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIM 526
+ SISRD + R +IRKTV+QIKDEGLG +KPDWITV AT+++ K ++F YTACP M
Sbjct: 462 TQSISRDITPGASRNEIRKTVAQIKDEGLGMGDKPDWITVKATVIFFKNESFFYTACPNM 521
Query: 527 IGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM 586
IGDR CNKKV + G W CD+CD+ ECDYRY+LQFQIQDH+G WVTAFQE +E++
Sbjct: 522 IGDRQCNKKVTKSTTGNWTCDKCDREFEECDYRYLLQFQIQDHSGTAWVTAFQEAGQELL 581
Query: 587 GMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYN 646
G SA +L +LK ++ D +F + + N F +YL +LKVKEE++ DE++VK+T VK E+ +
Sbjct: 582 GCSATELNALK--EREDPRFADTMLNCLFQEYLLRLKVKEESYGDERKVKNTAVKVEKVD 639
Query: 647 YSSETRFILDLMDK 660
S E++F+LDL+ K
Sbjct: 640 PSGESKFLLDLISK 653
>gi|13536993|dbj|BAB40712.1| replication protein A 70kDa [Oryza sativa Japonica Group]
Length = 654
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/674 (48%), Positives = 461/674 (68%), Gaps = 60/674 (8%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQ+++L+ V + + +RFR V+SDG+ + + A Q ++ SG L+ GS+V
Sbjct: 21 PVLQIVELRGV--QVNGAGVTRGERFRAVVSDGTAASSALFAAQLSDHARSGALRRGSIV 78
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGV 121
+L+++ N + R I+++++L+V++ +C+ IG P S TG+P N T
Sbjct: 79 QLSEYVINEVGPRRIIVILNLEVLVSECEIIGNPTAL----------SETGSPIPNPT-- 126
Query: 122 SLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEF 181
RV Q G P+ G +G+ SN + S+ P F
Sbjct: 127 --------RVEQFNG--------------------APQYGLMAGNSSNTTTKPSDNVPLF 158
Query: 182 SRPYA---SNYARTP-----------QAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNP 227
A SN+A P Q Y +P+ Y N G + K+E P+RIIPI+ALNP
Sbjct: 159 QNSMAGNSSNFATRPSDKVPVFQPTVQPSYRPAPN-YKNHGAIMKNEAPARIIPISALNP 217
Query: 228 YMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEA 287
Y G+W IKARVTAKG++R Y+N +GDGKVF FDLLDSDGGEIRVTCFNA+ D+FY VE
Sbjct: 218 YQGRWAIKARVTAKGDIRRYHNAKGDGKVFSFDLLDSDGGEIRVTCFNALLDRFYEVVEV 277
Query: 288 GKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEG 347
GK+Y+VSRG+L+PAQKN+NHL+N+ EI L+ S V LC ++++SIP Q+F FRPIN++E
Sbjct: 278 GKVYVVSRGNLRPAQKNYNHLNNEWEILLENGSTVDLCPDENSSIPTQRFDFRPINEIED 337
Query: 348 MENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLR 407
+NN+++D+IGVV+ ++P ++ RKNG ETQKRT++L+DMSGRSVE+T+WG+FCN +G +
Sbjct: 338 AQNNAILDIIGVVTSVNPCTTIQRKNGMETQKRTMNLKDMSGRSVEVTMWGDFCNREGSQ 397
Query: 408 LQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQ 467
LQ M + G+FP+LAVKAG+VSDF+GK VGTIS+TQ FI PD EAH L++WF+ G++
Sbjct: 398 LQGMVERGIFPVLAVKAGKVSDFSGKSVGTISSTQFFINPDSAEAHSLRQWFDSGGRDAF 457
Query: 468 SVSISRD-SLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIM 526
+ SISRD + R +IRKTV+QIKDEGLG +KPDWITV AT+++ K ++F YTACP M
Sbjct: 458 TQSISRDITPGASRNEIRKTVAQIKDEGLGMGDKPDWITVKATVIFFKNESFFYTACPNM 517
Query: 527 IGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM 586
IGDR CNKKV + +G W CD+CD+ ECDYRY+LQFQIQDH+G WVTAFQE +E++
Sbjct: 518 IGDRQCNKKVTKSTNGNWTCDKCDREFEECDYRYLLQFQIQDHSGTAWVTAFQEAGQELL 577
Query: 587 GMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYN 646
G SA +L +LK ++ D +F + + N F +YL +LKVKEE++ DE++VK+T VK E+ +
Sbjct: 578 GCSATELNALK--EREDPRFADTMLNCLFQEYLLRLKVKEESYGDERKVKNTAVKVEKVD 635
Query: 647 YSSETRFILDLMDK 660
S E++F+LDL+ K
Sbjct: 636 PSGESKFLLDLISK 649
>gi|302770080|ref|XP_002968459.1| hypothetical protein SELMODRAFT_89304 [Selaginella moellendorffii]
gi|300164103|gb|EFJ30713.1| hypothetical protein SELMODRAFT_89304 [Selaginella moellendorffii]
Length = 636
Score = 635 bits (1638), Expect = e-179, Method: Compositional matrix adjust.
Identities = 319/672 (47%), Positives = 444/672 (66%), Gaps = 73/672 (10%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++QV+D+K + S Q + Q+R+R+VLSDG+ QQ MLATQ NE+V +G L S+V
Sbjct: 23 PIVQVLDVKQIGSNQ-----NVQERYRLVLSDGTAVQQAMLATQLNEVVKNGTLMKSSIV 77
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGV 121
+L ++ CN +++R IVIV++LDV+ + G+P GS G
Sbjct: 78 KLQEYICNTVKDRKIVIVLNLDVLAEATSFGGRPTETNSLGGRAAEGSSIG--------- 128
Query: 122 SLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNP--RP 179
G T PE GSF Q+ +P RP
Sbjct: 129 --------------GRT-------------------PE----PGSFGGQATPAVSPYGRP 151
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYA------------NRGLVGKSEVPSRIIPIAALNP 227
+R Y P +S YA NRG + ++E P ++PIAALNP
Sbjct: 152 AEARRETIAYGGRP----AESMGSYAPNPPYGPPPTYTNRGPIARNEGPPGLVPIAALNP 207
Query: 228 YMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEA 287
Y G+WTIKAR+T+K +LR +NN RGDG+VF FDLLD++GGEIRVTCFN VAD+FY + +
Sbjct: 208 YHGRWTIKARITSKSDLRRFNNARGDGRVFSFDLLDAEGGEIRVTCFNNVADEFYERAQV 267
Query: 288 GKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEG 347
G++Y+VS+GSL+ AQK FNHL ND EI + S++ C E D+S+P+Q F F+ ++++E
Sbjct: 268 GRLYMVSKGSLRAAQKQFNHLKNDWEIMFEKDSVLDPCPE-DSSVPQQVFDFKQVSEIEN 326
Query: 348 MENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLR 407
+ NN++VD IGVV ++ T ++MRKNGTETQ+RTL LRD SG+SVE+T+WGNFC +G
Sbjct: 327 LPNNAMVDAIGVVVGVNQTTTIMRKNGTETQRRTLQLRDRSGKSVEITMWGNFCTQEGQH 386
Query: 408 LQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQ 467
LQ +CDSG PILA+KAGRVSDF+GK +GTIS+T+ I PD PEA L+ WFE+EG++ Q
Sbjct: 387 LQELCDSGQSPILAIKAGRVSDFSGKSLGTISSTRFQINPDHPEARSLQLWFEREGRHAQ 446
Query: 468 SVSISRDSL-SVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIM 526
+ SISR+ GR + RKTVSQIKDEGLG EKPD++T+ ATI +IK D+FCYTACP+
Sbjct: 447 AQSISREGAGGGGRTENRKTVSQIKDEGLGRSEKPDFVTIRATIHFIKTDSFCYTACPLQ 506
Query: 527 IGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM 586
IGDR C+KKV NNGDG W C+RCD++V ECDYRY+L Q+ DHTG TW+T FQE AEE++
Sbjct: 507 IGDRQCSKKVTNNGDGTWRCERCDRTVPECDYRYMLSIQVMDHTGATWLTGFQEAAEELL 566
Query: 587 GMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYN 646
G+ AKDL+ K D +F + + + FT++ FK+++KEE+F+DEQRVK + +AE+ +
Sbjct: 567 GVKAKDLFMWKQEDNG--RFLDHIASIQFTQHHFKVRIKEESFNDEQRVKVNIQRAEKLD 624
Query: 647 YSSETRFILDLM 658
+ +E+++++D +
Sbjct: 625 FVAESKYMIDAI 636
>gi|326517527|dbj|BAK03682.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 654
Score = 632 bits (1630), Expect = e-178, Method: Compositional matrix adjust.
Identities = 318/660 (48%), Positives = 451/660 (68%), Gaps = 34/660 (5%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++QV++L+ V + + R+R ++SDG+ + M A Q ++ SGL++ GSVV
Sbjct: 23 PIVQVVNLRCV--NVDGRGTPRSDRWRGLVSDGAETCPAMFAGQLSDQARSGLIRRGSVV 80
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGV 121
+L ++ N++ R +++V++L V++ +CD IG PV S+ Q NP+
Sbjct: 81 QLDEYVINMVGGRRVIVVLNLTVLLAECDIIGNPVITPESESSNQ-----NNPK------ 129
Query: 122 SLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEF 181
++ N R L P+ N+P F+P V +GS N S+ P F
Sbjct: 130 -VEQFNGARQYGLAAGN---PSPTRPNGNVP--VFQPSV---AGSSLNTPTRLSDKSPVF 180
Query: 182 SRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAK 241
T Q Y +PS Y N+G + K+E P+RIIPI++LNPY G+W IK RVTAK
Sbjct: 181 QP--------TAQPSYRPAPS-YKNQGAIAKNEAPARIIPISSLNPYQGRWAIKGRVTAK 231
Query: 242 GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPA 301
G++R Y+N +GDGKVF+FDLLDSDGGEIRV CFNA D+FY VE GK+Y+VSRG+LKPA
Sbjct: 232 GDIRRYHNAKGDGKVFNFDLLDSDGGEIRVACFNAHVDRFYEVVEVGKVYVVSRGNLKPA 291
Query: 302 QKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVS 361
Q+N+NHL+++ EI L+ S V LC ++D+SIP QQF+FRPI+++E +V+D+IGV
Sbjct: 292 QRNYNHLNSEWEITLERDSSVDLCPDEDSSIPSQQFNFRPISEIEDTPTGTVLDIIGVAI 351
Query: 362 YISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILA 421
+SP+ ++ +KNGTET KR + L+DMSGRSV+LT+WG+FCN +G +LQ M + GVFP+L
Sbjct: 352 SVSPSTTVQKKNGTETLKRIIGLKDMSGRSVDLTMWGDFCNREGSQLQEMVERGVFPVLG 411
Query: 422 VKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRD-SLSVGR 480
VK GRV+DFNGK +GTIS++QL I+PD EAH L++WF+ G++ + SISRD + + R
Sbjct: 412 VKTGRVNDFNGKCIGTISSSQLLIDPDLSEAHTLRQWFDGGGRDASTQSISRDHTPAASR 471
Query: 481 ADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNG 540
++R T+++IKDEGLG +KPDW+TV A+I++ K DNFCYTACP GDR CNKKV
Sbjct: 472 NEVRMTIAKIKDEGLGMGDKPDWVTVKASIIFFKSDNFCYTACPTKEGDRQCNKKVTKGT 531
Query: 541 DGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVD 600
G W CDRCD+ ECDYRY+LQ QIQDH+G WVTAFQE A+E++G SA DL + Y +
Sbjct: 532 SGLWVCDRCDKEFPECDYRYLLQLQIQDHSGTAWVTAFQETAQELLGCSALDL--ITYKE 589
Query: 601 QNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDK 660
D +F E++ + F YL +LKVKEET+SDE+RVK+T+VK ER++ ++E+R +LDL+ +
Sbjct: 590 NGDPRFAEIMLSCLFQDYLLRLKVKEETYSDERRVKNTLVKVERFDPAAESRHLLDLLSR 649
>gi|115461691|ref|NP_001054445.1| Os05g0111000 [Oryza sativa Japonica Group]
gi|52353639|gb|AAU44205.1| unknown protein [Oryza sativa Japonica Group]
gi|113577996|dbj|BAF16359.1| Os05g0111000 [Oryza sativa Japonica Group]
gi|222629944|gb|EEE62076.1| hypothetical protein OsJ_16860 [Oryza sativa Japonica Group]
Length = 951
Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust.
Identities = 309/623 (49%), Positives = 419/623 (67%), Gaps = 23/623 (3%)
Query: 184 PYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGE 243
P + Y + + Y Q P +Y NRG +++ +RIIPI ALNPY KWTIKARVTAK +
Sbjct: 272 PPGNAYGQPSRPSYQQPPPVYMNRGPASRNDSATRIIPITALNPYQPKWTIKARVTAKSD 331
Query: 244 LRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQK 303
+RH++N R G VF FDLLD+ GGEIR C+ AD+F+ Q+E G++YL+SRGSLKPAQK
Sbjct: 332 IRHWSNARSSGTVFSFDLLDAQGGEIRAQCWKESADKFFGQIEVGRVYLISRGSLKPAQK 391
Query: 304 NFNHLHNDLEIFLDM-TSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSY 362
+N L++D EI LD+ S V++C +DD SIPR Q++FR I+++E M N ++VDL+GVV+
Sbjct: 392 KYNTLNHDYEITLDIGLSTVEVCSDDDNSIPRLQYNFRQISELENMANETIVDLLGVVTS 451
Query: 363 ISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAV 422
+SP+A++MRK GTET+KR++ L+D+SGRS+E+TLWGNFC+ +G +LQ CDSG PI+A
Sbjct: 452 VSPSATIMRKIGTETRKRSIQLKDLSGRSIEVTLWGNFCDAEGQQLQLQCDSGSNPIIAF 511
Query: 423 KAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRAD 482
K RV DFNGK V TI +TQL I PDFPE RL++W+ EGK +S+SR+ L++GR D
Sbjct: 512 KGARVGDFNGKSVSTIGSTQLIINPDFPEVERLRQWYMTEGKTAPCISLSREMLNMGRTD 571
Query: 483 IRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIG-DRPCNKKVMNNGD 541
RKT++QIKDE LG EKPDWITV A I ++ ++FCY ACP ++ R CNKK +NNGD
Sbjct: 572 ARKTIAQIKDENLGRLEKPDWITVKAAISHVTTESFCYPACPKLLPVGRQCNKKAINNGD 631
Query: 542 GRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQ 601
G WHCDRCD+S +YRY+L+FQIQDHTG T+ +AF E E+I G A +L+S++ VDQ
Sbjct: 632 GMWHCDRCDESFQNPEYRYMLRFQIQDHTGSTYASAFDEAGEQIFGRKAGELFSIRNVDQ 691
Query: 602 NDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
+D +F E++ + YLFKLKVKEET++DEQ +K T VK E+ + S E+ +L +D
Sbjct: 692 DDAQFAEIIEGVRWHLYLFKLKVKEETYNDEQSLKCTAVKVEKLDPSKESNVLLGAID-- 749
Query: 662 KSGDSTSFALKAENIIPKPEMTYTGTGNIGSRQTAPVVANYVGNNSNAGAASGLLANQMG 721
N++ P+ N G T PV + +SNA A + NQ G
Sbjct: 750 -------------NLLLDPKGQSDLAPNAGF--TDPVGGHGAPTSSNAYAMNTGGVNQFG 794
Query: 722 QYGNQYSGSRLPAAGTSAARQSCSSCGAVGHSSMNCP--SIMSGPGQSSGGGYANSFSSG 779
Q + +G P A T Q+CS CGA GHS+ C + M S+GG +++S
Sbjct: 795 QQASISAGMSTPLAATRNL-QTCSICGANGHSAQICHVGADMDMQETSAGGSSMGNYNSI 853
Query: 780 AGIATSSECYKCHKTGHWARDCP 802
AG SSECYKC + GH+ARDCP
Sbjct: 854 AGNG-SSECYKCKQPGHYARDCP 875
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 72/128 (56%), Gaps = 7/128 (5%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQV+D++ V +K +RFRM+LSDG +QQ MLAT N LV L+ G+VV
Sbjct: 25 PVLQVVDVRPVTTKNAPPTPKPAERFRMMLSDGVNTQQSMLATALNPLVKDATLRPGTVV 84
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGV 121
+LT F CN IQ + I+IV+ LDV+ + C IG P + +P S+T N
Sbjct: 85 QLTDFMCNTIQGKRIIIVVKLDVLQNDCIVIGNP-------KHYEPKSLTKEQDPNLQAS 137
Query: 122 SLQHHNNT 129
Q +N T
Sbjct: 138 VAQTNNGT 145
>gi|356507210|ref|XP_003522362.1| PREDICTED: LOW QUALITY PROTEIN: replication protein A 70 kDa
DNA-binding subunit-like [Glycine max]
Length = 586
Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust.
Identities = 318/575 (55%), Positives = 399/575 (69%), Gaps = 22/575 (3%)
Query: 52 SGLLQIGSVVR-----LTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNE- 105
+ LLQ V++ + + + N +N I+I++DLDV++DKC+ IG+PVPA + + E
Sbjct: 7 TALLQTLPVIKDLLRDIRRQSNNHHRNLRIIIIVDLDVVLDKCELIGEPVPAPKDAPTES 66
Query: 106 ---QPGSVTGNPQ----SNATGVSLQHHNNTRVSQLPGDTDAVPAARHV-GSNLPPNYFK 157
Q G GNPQ S+ TG N S P A P A V SN P Y K
Sbjct: 67 ATGQSGVTYGNPQLLNSSSHTGGMPARPNIASPS--PDHPKANPYASSVYSSNALPTYPK 124
Query: 158 PE-----VGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPS-MYANRGLVG 211
E SGS Q+ F NP+ E SR ++YAR PQ P + PS MY N+ +G
Sbjct: 125 VEHEISRSAPFSGSSGGQNTGFHNPQFEASRSLQNSYARPPQQPMYRHPSPMYTNKAPMG 184
Query: 212 KSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRV 271
++E RIIPIA LNPY WTIKARVT K ELRHY N RGD KVF FDLLDSDGGEIR
Sbjct: 185 RNEAAPRIIPIATLNPYQSMWTIKARVTFKAELRHYTNARGDRKVFSFDLLDSDGGEIRA 244
Query: 272 TCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDAS 331
TCFN VADQFY+ +EAGK+YL+ RGS+KP QKNFNHL ND E+ LD+ S++Q C +D+ S
Sbjct: 245 TCFNVVADQFYNVIEAGKVYLIFRGSIKPTQKNFNHLPNDQELTLDVASIIQPCLDDNDS 304
Query: 332 IPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRS 391
I Q F++RPI+++E +ENN++VD+IGVV+ ISP S+MRKNGTE QKRTL L+DMSGRS
Sbjct: 305 ITSQTFNYRPISEIESLENNNIVDVIGVVTSISPKTSIMRKNGTEVQKRTLQLKDMSGRS 364
Query: 392 VELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPE 451
VELTL GNFC +G LQ +CD G FP+LA KA RV+DFNGK VGTI+T+QL++E DFPE
Sbjct: 365 VELTLRGNFCIVEGQMLQSICDVGEFPVLATKAIRVNDFNGKSVGTIATSQLYVEADFPE 424
Query: 452 AHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIV 511
A LK WFE EGK+ ++SISR+ ++G+ D+RKT+SQIKDE LGT EKP+WI+V A
Sbjct: 425 ACILKIWFENEGKSVPTLSISREMSNLGKTDVRKTISQIKDEKLGTSEKPNWISVFAAFX 484
Query: 512 YIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTG 571
+IK DNF Y CP+ I DR CNK V NN DG WHC+ C QS+ CD+RY+L QIQDHT
Sbjct: 485 HIKVDNFYYPGCPLKIRDRQCNKNVTNNADGTWHCEICIQSIDACDFRYLLSMQIQDHTS 544
Query: 572 LTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKF 606
+TWVT FQ+ EEIMG+ AK LY +KY +Q+D+KF
Sbjct: 545 ITWVTVFQKSGEEIMGIPAKYLYYMKYEEQDDDKF 579
>gi|226502879|ref|NP_001151792.1| DNA binding protein [Zea mays]
gi|195649707|gb|ACG44321.1| DNA binding protein [Zea mays]
gi|223945267|gb|ACN26717.1| unknown [Zea mays]
gi|413942327|gb|AFW74976.1| DNA binding protein [Zea mays]
Length = 876
Score = 622 bits (1604), Expect = e-175, Method: Compositional matrix adjust.
Identities = 342/853 (40%), Positives = 503/853 (58%), Gaps = 89/853 (10%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQV+D+++V + +RFRMVLSDG + Q MLAT N V G +Q GS+V
Sbjct: 25 PVLQVVDVRMV----NNAKNPSAERFRMVLSDGEHTMQSMLATAENARVRDGSIQKGSIV 80
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQ-RPSSNEQPGSVTGNPQSNATG 120
L + TC+ IQ+R I+IV+ LDV+ +C IG P P + R NEQ ++ N TG
Sbjct: 81 HLLECTCSTIQSRRIIIVIKLDVLQSECAIIGNPRPYEMRNQPNEQGTNIPANAAQANTG 140
Query: 121 VSLQHHNNTRVSQLPGDTDAVPAAR--HVGSNLP-----------------------PNY 155
S PG + A+R V +N+P PN
Sbjct: 141 T---------YSSGPGLLGSPAASRPAQVANNVPYSGSYGGYHGTVVPPIAPAVESVPN- 190
Query: 156 FKPEVGAGSGSFSN------------QSASFSNPRPEFSRPY--------ASNYARTPQA 195
V G+ S N Q + S+P F+ P + Y + Q+
Sbjct: 191 VASGVTYGTTSAHNTMNAGMTQSNLQQRSLNSHPNQRFAVPSMAGGSGAPGNTYGQPAQS 250
Query: 196 PYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGK 255
Y Q P + NR V K++ R++P+A LNPY+ KWTIK RVTAK +LR YNN RG GK
Sbjct: 251 FYQQPPPGHMNRTPVSKNDA-YRLVPLAQLNPYLDKWTIKVRVTAKTDLRFYNNARGAGK 309
Query: 256 VFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIF 315
VF FDLLD GEIR TCFN ADQF++ +E K+YL+S+GSLKPAQK FN L+++ EI
Sbjct: 310 VFSFDLLDEQRGEIRATCFNTQADQFFNLIEVDKVYLISKGSLKPAQKKFNSLNHEYEIS 369
Query: 316 LDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGT 375
LD + +++C +DD++IPRQQ++FR I+++E +E ++++DLIG+V+ + P+ + +RK+G
Sbjct: 370 LDSRTSIEVCADDDSNIPRQQYNFRKISEIENIEKDAILDLIGIVTSVGPSVTFIRKDGV 429
Query: 376 ETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVV 435
ETQ+RTL L+DMSGRSV+LTLWG C +G +LQ +CDSG+ P+LA+K RV+D++G+ V
Sbjct: 430 ETQRRTLELKDMSGRSVQLTLWGKLCVAEGNQLQSLCDSGLNPVLALKGARVTDYSGRSV 489
Query: 436 GTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGL 495
+ +TQL I+P+ PEA L+ W+ GK VS+S +S+G +RK+++QIKDE L
Sbjct: 490 SSAGSTQLKIDPEIPEAESLRRWYATGGKTAACVSLS--VVSMGGTCVRKSIAQIKDENL 547
Query: 496 GTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVE 555
G EKPD+ITV A I ++ DNFCY AC I + R CNKKV +NGDG W CD+CDQS+
Sbjct: 548 GQLEKPDFITVKAAISHLIADNFCYPACTIDVNGRMCNKKVTDNGDGTWRCDKCDQSLPN 607
Query: 556 CDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATF 615
C+YRY+L QIQDH+G+T TAF++ A+ ++G S +L ++ D E+F E+++ A +
Sbjct: 608 CEYRYVLNGQIQDHSGVTNFTAFEDAAKVMIGHSGHELNNISVED--SERFAEILQAARW 665
Query: 616 TKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSGDSTSFALKAEN 675
++LF LKVKEE ++D +VK + KAE+ + + E+ ++L +++ L D+ S +
Sbjct: 666 QQFLFTLKVKEEIYNDAPQVKCNITKAEKLDPAIESSYLLGVINGLLQDDTGSPSGA--- 722
Query: 676 IIPKPEMTY-TGTGNIGSRQTAPVVANYVGNNSNAGAASGLLANQMGQYGNQYSGSRLPA 734
+ M Y G N G+ ++ P +N + +G G ANQ+ Q + Y+G P
Sbjct: 723 ---QGAMAYNAGISNTGAGRSVP-TSNSAYTTNLSGPRYGESANQLAQQESTYTGVTTPV 778
Query: 735 AGTSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSS------GAGIATSSEC 788
+ +Q+C SCG+ GH+ NCP+ G Y ++ G + C
Sbjct: 779 SAARNVQQTCVSCGSSGHNVQNCPA----------GTYRQQAAASAASSYGTSQPRNGLC 828
Query: 789 YKCHKTGHWARDC 801
+KC++ GH+A C
Sbjct: 829 FKCNQPGHFANSC 841
>gi|326533496|dbj|BAK05279.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1027
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 296/627 (47%), Positives = 408/627 (65%), Gaps = 26/627 (4%)
Query: 184 PYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGE 243
P + Y R Q Y Q P YAN G V K+ R +PI+ALNPY WTIKARVTAK +
Sbjct: 293 PPGNVYGRPAQPSYQQPPQAYANNGPVAKNGAALRTVPISALNPYQRTWTIKARVTAKSQ 352
Query: 244 LRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQK 303
++HY N +G GK+F+FDL D+ GGEIR CFN DQFY +E K+YL+SRGSLKPA K
Sbjct: 353 VKHYKNAKGPGKLFNFDLRDAHGGEIRAVCFNTQLDQFYDLIEVDKVYLISRGSLKPANK 412
Query: 304 NFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYI 363
+NHL+ND E+ LD ++ +++C +DD+SIPRQQF FR I+++ M+ +++VDL+GVV+ +
Sbjct: 413 QYNHLNNDYEVSLDSSTTIEVCSDDDSSIPRQQFDFRQISEIANMDKDTMVDLLGVVTSV 472
Query: 364 SPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVK 423
SP++ RK+G ETQKR L L+DMSG SVE+T WG FCN +G +LQ +CDSG+ P+LA++
Sbjct: 473 SPSSPFTRKDGAETQKRVLQLKDMSGFSVEITFWGGFCNAEGQQLQSLCDSGLNPVLALR 532
Query: 424 AGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADI 483
+ RV DF GK V TI ++ L I PDFP+A L++W+ EGKN +S+S + +GR D
Sbjct: 533 SVRVGDFKGKNVSTIGSSFLKINPDFPDAESLRQWYITEGKNAAFISLSMEGSGMGRTDD 592
Query: 484 RKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGR 543
RKT+ QIK E LG EKPDWITV TI +I DNFCY AC + CNKKV NNGDG
Sbjct: 593 RKTIEQIKAENLGRSEKPDWITVKGTISHISTDNFCYPACTTEVNGTRCNKKVTNNGDGM 652
Query: 544 WHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQND 603
W CD+C+QS C+YRY+LQ QIQD+TG ++ TAF + ++I+G+ A+DLY +K+ +Q+D
Sbjct: 653 WQCDKCEQSTPNCEYRYMLQCQIQDYTGTSYATAFHDAGKDIIGLPAQDLYRIKHEEQDD 712
Query: 604 EKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERY-NYSSETRFILDLMDKLK 662
EKF ++++ F +LFKLKVKEE F+DE RVK + A++ + S E+RF+L +D L
Sbjct: 713 EKFADIIQKVRFELFLFKLKVKEEVFNDEPRVKCYIANAQKLEDTSKESRFLLGPIDSL- 771
Query: 663 SGDSTSFALKAENIIPKPEMTYTGTGNIGSRQTAPVVANYVGNNSNAGAASGLLANQMGQ 722
L + + P P + N +SN G S +++Q Q
Sbjct: 772 --------LVDDGLGPTPVV------------NGAAAVNTAFTSSNTGTYSTNMSDQ-NQ 810
Query: 723 YGNQYSGSRLPAAGTSAAR--QSCSSCGAVGHSSMNCPSIMSGPGQSSGGGY-ANSFSSG 779
YG + S S + A S R Q+CS CG+ HS NCP++ Q + GY A+S+ S
Sbjct: 811 YGQRVSSSSMVPATPSITRYSQNCSVCGSSEHSVQNCPAVAMDMQQPAASGYAASSYGSS 870
Query: 780 AGIATSSECYKCHKTGHWARDCPSLNA 806
G A S C+KC++ GH++R+CP A
Sbjct: 871 PGEAGSGLCFKCNQPGHFSRECPQQEA 897
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/94 (56%), Positives = 66/94 (70%), Gaps = 2/94 (2%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQV DL+ V +K H +R+RM+LSDG SQQ MLAT N LV +G L+IGSVV
Sbjct: 27 PVLQVADLRTVTTKNHVG--HLSERYRMLLSDGVHSQQSMLATTHNHLVNTGALRIGSVV 84
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKP 95
L TCN IQNR I+IV++L+V+ +CD IGKP
Sbjct: 85 HLHDITCNTIQNRRIIIVVELEVLQSECDLIGKP 118
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 55/118 (46%), Gaps = 22/118 (18%)
Query: 707 SNAGAASGLL--ANQMGQYGNQYSGSRLPAAGTSAARQS-----CSSCGAVGHSSMNCPS 759
+NA A SGL NQ G + G + G SA + C C GH + +CP
Sbjct: 905 ANANANSGLCFKCNQPGHFSRDCPGQAANSYGASAGVNAGAAGLCYKCNQTGHFARDCP- 963
Query: 760 IMSGPGQSSGGGYANSF--SSGAGIATSSECYKCHKTGHWARDCPSLNAAP--PAYGS 813
G ANS+ S+GA T+ CYKC++ GH+ARDC A P AYG+
Sbjct: 964 ----------GQAANSYGASAGANSGTAGLCYKCNQPGHFARDCQGQAATPQRQAYGN 1011
>gi|218195961|gb|EEC78388.1| hypothetical protein OsI_18166 [Oryza sativa Indica Group]
Length = 988
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 355/843 (42%), Positives = 485/843 (57%), Gaps = 118/843 (13%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQV+D++ V +K +RFRM+LSDG +QQ MLAT N LV L+ G+VV
Sbjct: 146 PVLQVVDVRPVTTKNAPPTPKPAERFRMMLSDGVNTQQSMLATALNPLVKDATLRPGTVV 205
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGV 121
+LT F CN IQ + I+IV+ LDV+ + C IG P + +P S+T N
Sbjct: 206 QLTDFMCNTIQGKRIIIVVKLDVLQNDCIVIGNP-------KHYEPKSLTKEQDPNLQAS 258
Query: 122 SLQHHNNTRV--SQLPGDTDAVPAARHVGSNL----PPNYFKPEVGA------------- 162
Q +N T + + G + A P A SN P N + +G+
Sbjct: 259 VAQTNNGTYSGGASMLGPSVA-PRAEQAASNSSYGGPYNSAQGMLGSSIGRTVEPGPANV 317
Query: 163 ---GS-GSFSNQSASFSN---PRPEFSRPYASNYARTPQAPYMQSPSMYAN--------- 206
GS G+ S Q+ + +N P + + A+ T Q M + +M
Sbjct: 318 SAVGSYGAISAQNTTNANMMQPTSQLNIMNANTMQPTSQLNTMNANTMQPTSQLSSLNPN 377
Query: 207 ---RGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLD 263
RG +++ +RIIPI ALNPY KWTIKARVTAK ++RH++N R G VF FDLLD
Sbjct: 378 QNQRGPASRNDSATRIIPITALNPYQPKWTIKARVTAKSDIRHWSNARSSGTVFSFDLLD 437
Query: 264 SDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDM-TSMV 322
+ GGEIR C+ AD+F+ Q+E G++YL+SRGSLKPAQK +N L++D EI LD+ S V
Sbjct: 438 AQGGEIRAQCWKESADKFFGQIEVGRVYLISRGSLKPAQKKYNTLNHDYEITLDIGLSTV 497
Query: 323 QLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTL 382
++C +DD SIPR Q++FR I+++E M N ++VDL+GVV+ +SP+A++MRK GTET+KR++
Sbjct: 498 EVCSDDDNSIPRLQYNFRQISELENMANETIVDLLGVVTSVSPSATIMRKIGTETRKRSI 557
Query: 383 HLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQ 442
L+D+SGRS+E+TLWGNFC+ +G RV+DFNGK V T +TQ
Sbjct: 558 QLKDLSGRSIEVTLWGNFCDAEG-------------------ARVADFNGKSVSTSGSTQ 598
Query: 443 LFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPD 502
L I PDFPE RL++W+ EGK +S+SR+ L++GR D RKT++QIKDE LG EKPD
Sbjct: 599 LIINPDFPEVERLRQWYMTEGKTAPCISLSREMLNMGRTDARKTIAQIKDENLGRLEKPD 658
Query: 503 WITVSATIVYIKCDNFCYTACPIMIG-DRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYI 561
WITV A I ++ ++FCY ACP ++ R CNKK +NNGDG WHCDRCD+S +YRY+
Sbjct: 659 WITVKAAISHVTTESFCYPACPKLLPVGRQCNKKAINNGDGMWHCDRCDESFQNPEYRYM 718
Query: 562 LQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFK 621
L+FQIQDHTG T+ +AF E VR + YLFK
Sbjct: 719 LRFQIQDHTGSTYASAFDEAG---------------------------VR---WHLYLFK 748
Query: 622 LKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSGDSTSFALKAENIIPKPE 681
LKVKEET++DEQ +K T VK E+ + S E+ +L +D L + PK +
Sbjct: 749 LKVKEETYNDEQSLKCTAVKVEKLDPSKESNVLLGAIDNLL-------------LDPKGQ 795
Query: 682 MTYTGTGNIGSRQTAPVVANYVGNNSNAGAASGLLANQMGQYGNQYSGSRLPAAGTSAAR 741
+ T PV + +SNA A + NQ GQ + +G P A T
Sbjct: 796 SDLAPNASF----TDPVGGHGAPTSSNAYAMNTGGVNQFGQQASISAGMSTPLAATRNL- 850
Query: 742 QSCSSCGAVGHSSMNCP--SIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWAR 799
QSC+ CGA GHS+ NC + M S+GG +++S AG SSECYKC + GH+AR
Sbjct: 851 QSCNICGANGHSAQNCHVGADMDMQETSAGGSSMGNYNSIAGNG-SSECYKCKQPGHYAR 909
Query: 800 DCP 802
DCP
Sbjct: 910 DCP 912
>gi|357113420|ref|XP_003558501.1| PREDICTED: LOW QUALITY PROTEIN: replication protein A 70 kDa
DNA-binding subunit-like [Brachypodium distachyon]
Length = 645
Score = 605 bits (1561), Expect = e-170, Method: Compositional matrix adjust.
Identities = 316/669 (47%), Positives = 441/669 (65%), Gaps = 48/669 (7%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PV+QV+DL+ + R+R +SDG S MLA + +L SG+++ GS+V
Sbjct: 23 PVVQVVDLR----------RANGDRWRACVSDGLTSCSAMLAERLGDLPRSGVVRCGSIV 72
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGV 121
+L + + +R IV+V+++ V+ +C IG P S SN +
Sbjct: 73 QLDDYVLS-DPSRRIVVVLNMTVLRAECAIIGNPTITSETVS------------SNQNHL 119
Query: 122 SLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEF 181
++ N TR L T P N+P F+P + A + N S P F
Sbjct: 120 RVEQFNGTRQYGL---TAGNPNLTRPNGNVP--VFQPSMAANT---LNTPTRLSGQTPAF 171
Query: 182 SRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAK 241
+P T Q Y +PS Y N G + K+E P+RIIPI+ LNPY G+W IK RVTAK
Sbjct: 172 -QP-------TAQPSYRPAPS-YKNHGAIAKNEAPARIIPISTLNPYQGRWAIKGRVTAK 222
Query: 242 GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPA 301
G++R Y+N +G+GKVF FDLLDSDGGEIRVTCFNA+ D+FY VE GK+Y+VSRG+LKPA
Sbjct: 223 GDIRRYHNAKGEGKVFSFDLLDSDGGEIRVTCFNALLDRFYEVVEVGKVYVVSRGNLKPA 282
Query: 302 QKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVS 361
QKN+NHL+N EI LD S V LC ++++SIP Q+F+FRPI++VE N +++D+IGVV
Sbjct: 283 QKNYNHLNNXWEITLDNGSSVDLCLDENSSIPSQRFNFRPISEVEDTANTAILDIIGVVI 342
Query: 362 YISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILA 421
+SP +L +KNG ETQKR ++L+DMSGRSV++T+WG FCN +G +LQ + + G FP+LA
Sbjct: 343 SVSPCTTLQKKNGMETQKRVINLKDMSGRSVDVTIWGEFCNREGSQLQEIVECGGFPVLA 402
Query: 422 VKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSL-SVGR 480
VK GRV+DF GK VGTIS++QL I+PD EAH L++WF+ G++ + SIS D + + R
Sbjct: 403 VKTGRVNDFGGKSVGTISSSQLLIDPDIAEAHSLRQWFDSGGRDASTQSISTDVIPAASR 462
Query: 481 ADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNG 540
DIR T++QIKDEGLG +KPDW+TV A+I++ K +NFCYTACP GDR CNKKV
Sbjct: 463 NDIRMTIAQIKDEGLGMGDKPDWVTVKASIIFFKNENFCYTACPNKEGDRQCNKKVTKGT 522
Query: 541 DGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVD 600
G W CD+C++ ECDYRY+LQ QIQDH+G TWVTAFQE ++++G SA+DL K +
Sbjct: 523 SGLWFCDKCNREFTECDYRYLLQLQIQDHSGTTWVTAFQESGQDLLGCSAQDLNRFK--E 580
Query: 601 QNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDK 660
+ D +F E + F +YL +LK+KEET+ DE+RVK+T+VK ER++ + E++++LD + +
Sbjct: 581 EEDPRFAETMLQCLFQEYLLRLKIKEETYGDERRVKNTLVKVERFDPAGESKYLLDSISR 640
Query: 661 LKSGDSTSF 669
ST+F
Sbjct: 641 -----STTF 644
>gi|242066720|ref|XP_002454649.1| hypothetical protein SORBIDRAFT_04g034780 [Sorghum bicolor]
gi|241934480|gb|EES07625.1| hypothetical protein SORBIDRAFT_04g034780 [Sorghum bicolor]
Length = 652
Score = 599 bits (1545), Expect = e-168, Method: Compositional matrix adjust.
Identities = 308/665 (46%), Positives = 438/665 (65%), Gaps = 42/665 (6%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PV+QV+DL+ + RFR ++SDG + + A+Q +L SG+++ GSVV
Sbjct: 23 PVVQVVDLRSIAVTG-----GSGPRFRAIISDGVATGHALFASQLCDLARSGVVRRGSVV 77
Query: 62 RLTKFTCNVI---QNRMIVIVMDLDVIIDKCDPIGKP-VPAQRPSSNEQPGSVTGNPQSN 117
+L + N + +NR +++++L+V+ +C+ IG P +P SN N
Sbjct: 78 QLLDYIVNDVGPHRNRKAIVILNLEVLAAECEIIGNPALPPDSGDSNSMRADQFNGALQN 137
Query: 118 ATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNP 177
+ + R P D V G++L N P
Sbjct: 138 GSIAGTALNKVAR----PSDNAQVIQRSMAGNSL--NMV--------------------P 171
Query: 178 RPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKAR 237
RP + A + T Q Y +P+ Y N G + K++ P+RIIPI+ALNPY G+W IK R
Sbjct: 172 RPSEN---AQVFQPTVQPSYRPAPN-YRNHGTIMKNDAPARIIPISALNPYQGRWAIKGR 227
Query: 238 VTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGS 297
VTAKGE+R Y+N +GDGKVF FDLLDSDGGEIR TCFN + D+FY VE GK+Y+VSRG+
Sbjct: 228 VTAKGEIRRYHNAKGDGKVFSFDLLDSDGGEIRATCFNTLVDRFYEVVEVGKVYVVSRGN 287
Query: 298 LKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLI 357
LKPA+K++NHL+N+ EIFL+ S ++LC ++++SIP Q+F F I+ +E ENN++VD+I
Sbjct: 288 LKPAKKDYNHLNNEWEIFLEFQSTIELCLDENSSIPAQRFSFSSIDKIEDSENNAIVDVI 347
Query: 358 GVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVF 417
GVV+ ++P+ ++ RKNG E QKRT+ L+D SGRSVELT+WG+FCN +GL+LQ M + GVF
Sbjct: 348 GVVTSVNPSTTIQRKNGMEAQKRTITLKDTSGRSVELTMWGDFCNREGLQLQEMVEYGVF 407
Query: 418 PILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRD-SL 476
P+LAVKAG+V+D++GK VGTIS++QL I PD EAH L++WF+ G++ + SISRD +
Sbjct: 408 PVLAVKAGKVNDYSGKSVGTISSSQLLINPDLAEAHSLRQWFDCGGRDASTQSISRDFTP 467
Query: 477 SVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKV 536
S R +IRKT++QIKD+GLG +KPDW+TV AT+ +IK D FCYTACP ++GDR C KKV
Sbjct: 468 SASRNEIRKTIAQIKDDGLGMGDKPDWVTVKATVTFIKTDPFCYTACPNVVGDRQCGKKV 527
Query: 537 MNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSL 596
+ G W CD+C+Q ECDYRY+LQ IQDHTG T TAFQE +E++G SA++L
Sbjct: 528 TKSDSGNWLCDKCNQEFPECDYRYLLQLNIQDHTGTTSATAFQEVGQELLGCSARELNMF 587
Query: 597 KYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILD 656
K + D ++ V+ + + YL +LKVKEE + DE+RVK+TVVK ER + S+E++F+LD
Sbjct: 588 K--ENEDPRYTAVLIHCLYQNYLLRLKVKEEQYGDERRVKNTVVKVERVDPSAESKFLLD 645
Query: 657 LMDKL 661
+ +
Sbjct: 646 SISRF 650
>gi|293331519|ref|NP_001169500.1| uncharacterized protein LOC100383373 [Zea mays]
gi|224029699|gb|ACN33925.1| unknown [Zea mays]
Length = 656
Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust.
Identities = 311/665 (46%), Positives = 440/665 (66%), Gaps = 38/665 (5%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PV+QV+DL+ + RFR ++SDG + + A+Q +L SG+++ GSVV
Sbjct: 23 PVVQVVDLRSIAVTGAP---GSGPRFRAIISDGVATGHALFASQLCDLARSGVVRRGSVV 79
Query: 62 RLTKFTCNVI---QNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNA 118
+L + N + +NR +++++++V++ +C+ IG P A P S +
Sbjct: 80 QLLDYIVNNVGPTRNRKAIVILNMEVLVAECEIIGNP--ALPPESGDS------------ 125
Query: 119 TGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSN-P 177
N+ R Q G A P GS L KP A S S + P
Sbjct: 126 ------SSNSLRADQFNG---APPNGSMAGSTLN-KVIKPSDNAPVIQRSMTGNSLNMVP 175
Query: 178 RPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKAR 237
RP + A + T Q Y +P Y + G + K++ P+RIIPI ALNPY G+W IKAR
Sbjct: 176 RPSDN---AQVFQPTVQPSYRPAPK-YRSHGTIMKNDAPARIIPIPALNPYQGRWAIKAR 231
Query: 238 VTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGS 297
VTAKGE+R Y+N +GDGKVF FDLLD+DGGEIR TCFNA+ D+FY VE GK+Y+VSRG+
Sbjct: 232 VTAKGEIRRYHNAKGDGKVFSFDLLDTDGGEIRATCFNALVDRFYEVVEVGKVYVVSRGN 291
Query: 298 LKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLI 357
LKPA+K++NHL+N+ EIFL+ S ++LC ++++SIP Q+F F I+ +E ENN++VD+I
Sbjct: 292 LKPAKKDYNHLNNEWEIFLEPQSTIELCLDENSSIPAQRFSFSSIDKIENSENNAIVDVI 351
Query: 358 GVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVF 417
GVV+ ++P+ ++ RKNG E QKRT+ L DMSGRSVELT+WG+FCN +G +LQ M + G F
Sbjct: 352 GVVTSVNPSTTIQRKNGMEAQKRTITLNDMSGRSVELTMWGDFCNREGSQLQEMVECGAF 411
Query: 418 PILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRD-SL 476
P+LAVKAG+V+D++GK VGTIS++QL I PD EAH L++WF+ G++ + SISRD +
Sbjct: 412 PVLAVKAGKVNDYSGKSVGTISSSQLHINPDLAEAHSLRQWFDCGGRDASTQSISRDFTP 471
Query: 477 SVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKV 536
S ++RKTV+QIKD+GLG +KPDW+TV A I +IK D+FCYTACP +IGDR C KKV
Sbjct: 472 SASWNEVRKTVAQIKDDGLGMGDKPDWVTVKAAISFIKTDSFCYTACPNVIGDRQCGKKV 531
Query: 537 MNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSL 596
+ G W CD+C+Q ECDYRY+LQ IQDHTG T VTAFQ+ +EI+G SA++L
Sbjct: 532 TKSDSGNWLCDKCNQEFPECDYRYLLQLNIQDHTGTTSVTAFQDRGQEILGCSARELNIF 591
Query: 597 KYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILD 656
K + D ++ +V+ N + YLF+LKVKEE + D ++VK+TV K ER + +E++F+LD
Sbjct: 592 K--ENKDPRYTDVLINCLYQNYLFRLKVKEEQYGDVRQVKNTVAKVERVDPLAESKFLLD 649
Query: 657 LMDKL 661
+ +
Sbjct: 650 SISRF 654
>gi|413924352|gb|AFW64284.1| hypothetical protein ZEAMMB73_597518 [Zea mays]
Length = 761
Score = 592 bits (1527), Expect = e-166, Method: Compositional matrix adjust.
Identities = 311/665 (46%), Positives = 440/665 (66%), Gaps = 38/665 (5%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PV+QV+DL+ + RFR ++SDG + + A+Q +L SG+++ GSVV
Sbjct: 128 PVVQVVDLRSIAVTGAP---GSGPRFRAIISDGVATGHALFASQLCDLARSGVVRRGSVV 184
Query: 62 RLTKFTCNVI---QNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNA 118
+L + N + +NR +++++++V++ +C+ IG P A P S +
Sbjct: 185 QLLDYIVNNVGPTRNRKAIVILNMEVLVAECEIIGNP--ALPPESGDS------------ 230
Query: 119 TGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSN-P 177
N+ R Q G A P GS L KP A S S + P
Sbjct: 231 ------SSNSLRADQFNG---APPNGSMAGSTLN-KVIKPSDNAPVIQRSMTGNSLNMVP 280
Query: 178 RPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKAR 237
RP + A + T Q Y +P Y + G + K++ P+RIIPI ALNPY G+W IKAR
Sbjct: 281 RPSDN---AQVFQPTVQPSYRPAPK-YRSHGTIMKNDAPARIIPIPALNPYQGRWAIKAR 336
Query: 238 VTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGS 297
VTAKGE+R Y+N +GDGKVF FDLLD+DGGEIR TCFNA+ D+FY VE GK+Y+VSRG+
Sbjct: 337 VTAKGEIRRYHNAKGDGKVFSFDLLDTDGGEIRATCFNALVDRFYEVVEVGKVYVVSRGN 396
Query: 298 LKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLI 357
LKPA+K++NHL+N+ EIFL+ S ++LC ++++SIP Q+F F I+ +E ENN++VD+I
Sbjct: 397 LKPAKKDYNHLNNEWEIFLEPQSTIELCLDENSSIPAQRFSFSSIDKIENSENNAIVDVI 456
Query: 358 GVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVF 417
GVV+ ++P+ ++ RKNG E QKRT+ L DMSGRSVELT+WG+FCN +G +LQ M + G F
Sbjct: 457 GVVTSVNPSTTIQRKNGMEAQKRTITLNDMSGRSVELTMWGDFCNREGSQLQEMVECGAF 516
Query: 418 PILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRD-SL 476
P+LAVKAG+V+D++GK VGTIS++QL I PD EAH L++WF+ G++ + SISRD +
Sbjct: 517 PVLAVKAGKVNDYSGKSVGTISSSQLHINPDLAEAHSLRQWFDCGGRDASTQSISRDFTP 576
Query: 477 SVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKV 536
S ++RKTV+QIKD+GLG +KPDW+TV A I +IK D+FCYTACP +IGDR C KKV
Sbjct: 577 SASWNEVRKTVAQIKDDGLGMGDKPDWVTVKAAISFIKTDSFCYTACPNVIGDRQCGKKV 636
Query: 537 MNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSL 596
+ G W CD+C+Q ECDYRY+LQ IQDHTG T VTAFQ+ +EI+G SA++L
Sbjct: 637 TKSDSGNWLCDKCNQEFPECDYRYLLQLNIQDHTGTTSVTAFQDRGQEILGCSARELNIF 696
Query: 597 KYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILD 656
K + D ++ +V+ N + YLF+LKVKEE + D ++VK+TV K ER + +E++F+LD
Sbjct: 697 K--ENKDPRYTDVLINCLYQNYLFRLKVKEEQYGDVRQVKNTVAKVERVDPLAESKFLLD 754
Query: 657 LMDKL 661
+ +
Sbjct: 755 SISRF 759
>gi|242086615|ref|XP_002439140.1| hypothetical protein SORBIDRAFT_09g001260 [Sorghum bicolor]
gi|190688743|gb|ACE86406.1| replication protein A1-like protein [Sorghum bicolor]
gi|241944425|gb|EES17570.1| hypothetical protein SORBIDRAFT_09g001260 [Sorghum bicolor]
Length = 933
Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust.
Identities = 286/617 (46%), Positives = 416/617 (67%), Gaps = 20/617 (3%)
Query: 189 YARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYN 248
Y + Q+ Y Q P + NR V K++ SR++P+A LNPY WTIKARVTAK +LRHYN
Sbjct: 282 YGQPAQSFYQQPPPGHMNRNPVSKNDA-SRLVPVAHLNPYQNTWTIKARVTAKTDLRHYN 340
Query: 249 NQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHL 308
N+ G GKVF FD+LD GGEIRVTCFNA ADQF+ +E K+YL+S+GS+K AQK FN L
Sbjct: 341 NKNGAGKVFSFDILDGQGGEIRVTCFNAQADQFFDLIEVDKVYLISKGSVKAAQKKFNSL 400
Query: 309 HNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTAS 368
+++ EI LD S +++C +DD++IPR ++FR I+++E +E ++VDLIG+V+ + P+ +
Sbjct: 401 NHEYEIALDFRSSIEVCVDDDSNIPRPHYNFRQISEIENLEAGTIVDLIGIVTSVGPSGT 460
Query: 369 LMRK-NGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRV 427
++RK + +E QKR L L+DMSGRS+ELTLWG FC+ +G +LQ CDSG+ P+LA+K RV
Sbjct: 461 IIRKLDNSEVQKRNLQLKDMSGRSIELTLWGKFCDAEGQQLQLQCDSGLNPVLALKGARV 520
Query: 428 SDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTV 487
++F+GK V T +T + ++PDFPEA L+ W+ EGK VS+S +S+GR D+RK V
Sbjct: 521 TEFSGKSVNTTGSTHVKVDPDFPEAESLRRWYATEGKTAACVSLS--VVSMGRTDVRKAV 578
Query: 488 SQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCD 547
+QIKDE LG EKPD+ITV I ++ DNFCY AC + + + CNKKV+NNGDG W CD
Sbjct: 579 AQIKDEDLGRSEKPDFITVKGAISHLTTDNFCYPACTLEVNGKVCNKKVINNGDGTWQCD 638
Query: 548 RCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFG 607
+CD+S+ C+YRY+LQ Q+QDHTG+T+ TAFQE EI+G SA +LY+++ +++ E+F
Sbjct: 639 KCDKSLPNCEYRYLLQCQVQDHTGVTYATAFQEAGIEIVGHSAYELYNIR--EEDPERFA 696
Query: 608 EVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSGDST 667
E+++ + ++LFKLKV EET++DE RVK +++AE+ + + E+ ++L +++ L D+
Sbjct: 697 EILQGVRWQQFLFKLKVYEETYNDEHRVKCNILRAEKLDPAKESSYLLGVINGLLQDDTG 756
Query: 668 SFALKAENIIPKPEMTY-TGTGNIGSRQTAPVVANYVGNNSNAGAASGLLANQMGQYGNQ 726
S +E P M Y G N G+ ++ P +N + +G G ANQ Q N
Sbjct: 757 S---PSEAQGP---MAYNAGLSNTGAGRSVP-TSNSAYTTNMSGPRYGESANQFAQQANT 809
Query: 727 YSGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIM--SGPGQSSGGGYANSFSSGAGIAT 784
Y G+ P + T Q+C SCG+ GH++ NCP+ M P S+ Y +S G
Sbjct: 810 YIGASTPVSATRNV-QTCMSCGSSGHNAQNCPAGMYKQQPAASTASSYGSSQPRNTG--- 865
Query: 785 SSECYKCHKTGHWARDC 801
C+KC++ GH+A C
Sbjct: 866 PRPCFKCNQIGHFADSC 882
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 76/122 (62%), Gaps = 5/122 (4%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQV+D+++V + + Q +RFRM+LSDG+ + Q ML+T N + G+++ GS+V
Sbjct: 25 PVLQVVDVRIVPNVKSATNQ---ERFRMLLSDGTHTMQSMLSTSENARIRDGIIKKGSIV 81
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVP--AQRPSSNEQPGSVTGNPQSNAT 119
L +FTC+ IQ+R I+I++ LDV+ +C IG P P + +NEQ ++ N T
Sbjct: 82 HLHEFTCSTIQHRRIIIIIKLDVLQTECAIIGDPKPYDVRIQPNNEQGTNIPANSAQANT 141
Query: 120 GV 121
G
Sbjct: 142 GT 143
>gi|357137873|ref|XP_003570523.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Brachypodium distachyon]
Length = 628
Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust.
Identities = 303/663 (45%), Positives = 433/663 (65%), Gaps = 63/663 (9%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++QV+D++ V R+R +SDG + + A Q + L SG ++ G+++
Sbjct: 23 PIVQVLDVRCV--------NVSADRWRGNVSDGVNTVPALFAGQLSALARSGAVRGGTIL 74
Query: 62 RLTKFTCNVIQN--RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
+L ++ N + R I++V+++ V+ +CD IG P T P++
Sbjct: 75 QLDEYVINNVGGGPRRIIVVLNMTVLRAECDIIGNP---------------TITPETR-- 117
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
+P H G+ +P V A S N + P
Sbjct: 118 ---------------------LPNQNHSGAEQFNGIRQPSVAANS---LNTPTMLGHQAP 153
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVT 239
F +P T Q Y +PS Y N G + K+E P+RIIPI++LNPY G+W IK RVT
Sbjct: 154 VF-QP-------TAQPSYRPAPS-YKNHGPIAKNEAPARIIPISSLNPYQGRWAIKGRVT 204
Query: 240 AKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLK 299
AKG++R Y+N +G+GKVF+FDLLDSDGGEIRVTCFN + D+FY VE GK+Y+VSRG+LK
Sbjct: 205 AKGDIRRYHNAKGEGKVFNFDLLDSDGGEIRVTCFNDLVDRFYEVVEVGKVYVVSRGNLK 264
Query: 300 PAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGV 359
PAQKNFNHL+N+ EI LD S V LC ++++SIP Q+F+FRPI++VE N +++D+IGV
Sbjct: 265 PAQKNFNHLNNEWEIVLDNGSSVDLCPDENSSIPSQRFNFRPISEVEDTPNATILDMIGV 324
Query: 360 VSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPI 419
V +SP ++ +KNG ETQKR ++L+DMSGRSV++T+WG FCN +G +LQ + GVFP+
Sbjct: 325 VISVSPCTTIQKKNGMETQKRIINLKDMSGRSVDVTMWGEFCNREGSQLQETVERGVFPV 384
Query: 420 LAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSL-SV 478
LAVK GRV+DF GK VGTIS++QL I+PD EAH L++WF+ G++ + SISRD+ +
Sbjct: 385 LAVKTGRVNDFGGKSVGTISSSQLLIDPDIVEAHSLRQWFDGGGRDASTQSISRDATPAA 444
Query: 479 GRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMN 538
R IRKTV+QIK+EGLG ++KPDW+TV A++++ K +NFCYT+CP GDR CNKKV
Sbjct: 445 SRNAIRKTVAQIKEEGLGMEDKPDWVTVKASVIFFKNENFCYTSCPNKEGDRQCNKKVTK 504
Query: 539 NGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKY 598
G W+CD+C++ ECDYRY+LQ QIQDH+G WVTAFQE +E++G+SA DL K
Sbjct: 505 GTSGLWYCDKCNREFTECDYRYLLQLQIQDHSGTAWVTAFQEAGQELLGVSASDLSRFK- 563
Query: 599 VDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLM 658
++ D +F E + F YL +LKVKEET+ DE+RVK+T+ K ER++ + E++++LD +
Sbjct: 564 -EEEDPRFAETMLRCLFQDYLLRLKVKEETYGDERRVKNTLAKVERFDPAGESKYLLDTI 622
Query: 659 DKL 661
+L
Sbjct: 623 SRL 625
>gi|224122534|ref|XP_002330505.1| predicted protein [Populus trichocarpa]
gi|222872439|gb|EEF09570.1| predicted protein [Populus trichocarpa]
Length = 502
Score = 580 bits (1494), Expect = e-162, Method: Compositional matrix adjust.
Identities = 264/401 (65%), Positives = 322/401 (80%), Gaps = 1/401 (0%)
Query: 204 YANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLD 263
Y N G V K+E P+RIIPI ALNPY G+W IKAR+TAKG+LR YNN RGDGKVF FDLLD
Sbjct: 101 YRNHGAVMKNEAPARIIPINALNPYQGRWAIKARITAKGDLRRYNNARGDGKVFSFDLLD 160
Query: 264 SDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQ 323
SDGGEIRVTCFNAV D+FY VE GK+YL+S+GSLKPAQKNFNHL ND EIFL+ TS V
Sbjct: 161 SDGGEIRVTCFNAVVDRFYDVVEVGKVYLISKGSLKPAQKNFNHLKNDWEIFLEATSTVD 220
Query: 324 LCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLH 383
LC E+D SIP+QQF F+PI+++E ENNS+ D+IGVV ++P+ ++RKNG ETQ+R L+
Sbjct: 221 LCPEEDGSIPQQQFSFKPISEIEIAENNSIFDVIGVVISVNPSVPILRKNGMETQRRILN 280
Query: 384 LRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQL 443
L+D SG +VELTLWG+FCN +G +LQ M DSG FPILAVKAG+VSDFNGK +GTIS+TQL
Sbjct: 281 LKDGSGWTVELTLWGDFCNKEGQKLQEMVDSGFFPILAVKAGKVSDFNGKSLGTISSTQL 340
Query: 444 FIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVG-RADIRKTVSQIKDEGLGTKEKPD 502
FI PD PEAH K+WF++ G++ S+SIS+D G + ++RKTVSQ+K EGLG +KPD
Sbjct: 341 FINPDIPEAHAAKDWFDRGGRDVASMSISKDIAQGGPKNEVRKTVSQVKLEGLGRSDKPD 400
Query: 503 WITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYIL 562
W TV A++ +IK D FCYTACP+MIGDR CNKKV +G+ RW CDRC+Q +CDYRY+L
Sbjct: 401 WATVRASVSFIKTDTFCYTACPLMIGDRQCNKKVTRSGNSRWQCDRCNQEFDDCDYRYLL 460
Query: 563 QFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQND 603
Q QIQDHTGLTW TAFQE EEI+G AK+LY LK + N+
Sbjct: 461 QVQIQDHTGLTWATAFQESGEEILGYPAKELYLLKCMGMNE 501
>gi|190688746|gb|ACE86409.1| replication protein A1-like protein [Sorghum bicolor]
Length = 993
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 322/785 (41%), Positives = 467/785 (59%), Gaps = 67/785 (8%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P+LQV+DL++V + +RF+MVLSDG + Q ML N V G +Q GS++
Sbjct: 245 PMLQVVDLQMV----NNVKNPSAERFQMVLSDGVYTMQCMLTAAENTHVLDGSIQKGSII 300
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQ-RPSSNEQPGSVTGNPQSNATG 120
L +FTC+ IQNR I+IV L V+ +C+ +G P P + R NEQ + N TG
Sbjct: 301 HLQEFTCSTIQNRRIIIVFKLYVLQSECNIMGNPKPYEMRNQPNEQVTNFPANAAQANTG 360
Query: 121 V---------------SLQHHNNTRVSQLPGDTD---------AVPAARHVGSNL---PP 153
+Q NN S G AV + +V S L
Sbjct: 361 TYSSGPGMLGSSAAPRPVQDVNNVPYSGSYGGYQGMMGRPFGHAVESVPNVASGLSYGTT 420
Query: 154 NYFKPEVGAGSGSFSNQSASF-SNPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGK 212
+ + G + Q S S+ P F P + + + Y QSP + R V K
Sbjct: 421 SAHNNTMNVGIVQSNLQQPSLNSHQNPRFVVPSMTGGS----SFYQQSPPGHMKRTPVSK 476
Query: 213 SEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVT 272
++ + ++P+A LNPY +W I ARVTAK +LRHY+N RG GKVF FDLLD GGEIR T
Sbjct: 477 NDA-NHLVPVAQLNPYQTRWKIMARVTAKTDLRHYSNSRGPGKVFSFDLLDGQGGEIRAT 535
Query: 273 CFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASI 332
CFN ADQF+ +E K+YL+S+G LKPA K FN L+++ E+ LD + +++C +DD++I
Sbjct: 536 CFNVQADQFFDLIEVDKVYLISKGLLKPAMKKFNSLNHEYEVTLDHRTSIEVCVDDDSNI 595
Query: 333 PRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSV 392
PRQQ++FR I+++E +E ++VDLIG+V+ + P++ +MRK+GT+TQKRTL L+DMS RS+
Sbjct: 596 PRQQYNFRQISEIENIEAGAIVDLIGIVTSVGPSSIVMRKDGTQTQKRTLQLKDMSFRSL 655
Query: 393 ELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEA 452
E+ LWG FC+ +G +LQ +CDSG PIL++K GRV DF+G+ V TIS+TQL + PDF A
Sbjct: 656 EIILWGKFCDAEGRQLQLLCDSGSNPILSLKGGRVCDFSGRSVVTISSTQLKVNPDFQVA 715
Query: 453 HRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVY 512
RLK+W+ EGKNT +S+S ++ R+ + KT++QIKDE LG +KPD+ITV I +
Sbjct: 716 ERLKQWYIIEGKNTAFISLSWGISNMSRSHVLKTIAQIKDENLGRSDKPDFITVKGAISH 775
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
+K DNFCY AC + + R CNKKVMNNGDG W CD+C++S+ +YRY+L QIQDHTG+
Sbjct: 776 LKTDNFCYPACTMEVNGRLCNKKVMNNGDGTWQCDKCNKSLPNFEYRYLLLCQIQDHTGV 835
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
T+ TAFQ E I G +A++L+ ++ V+Q+D +F E+++ +YLFKLK+ EET++ E
Sbjct: 836 TYATAFQAAGEAIFGHTAQELFMIQNVEQDDMRFTEIMQAVLRREYLFKLKIYEETYNGE 895
Query: 633 QRVKSTVVKAERYNYSSETRFILDLMDKLKSGDSTSFALKAENIIPKPEMTYTGTGNIGS 692
QRV +++ E+ ET +L + + D +S+ IP G+ N+ +
Sbjct: 896 QRVICSIIGVEKL---EETNNLLKDVSRPILKDHSSY-------IPS-----VGSANLEA 940
Query: 693 RQTAPVVANYVGNNSNAGAASGLLANQMGQYGNQYSGSRLPAAGTSAARQSCSSCGAVGH 752
+Q+ +N G A +G G S + +AG A Q+C C GH
Sbjct: 941 KQSLLTSSNAYG-----------CATVVGDTGFAQSDG-IWSAGRGA--QACFKCNQPGH 986
Query: 753 SSMNC 757
S +C
Sbjct: 987 WSKDC 991
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 9/95 (9%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDG-SRSQQGMLATQRNELVTSGLLQIGSV 60
PVLQ+ D + ++ Q +R+ LSDG R Q G+LA N LV G L+ G+V
Sbjct: 31 PVLQLADEPRMAAETGQ--------YRVALSDGGERLQPGILAASLNHLVARGALRCGTV 82
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKP 95
+R+ ++ N+ +VIV+ L+++ +C I P
Sbjct: 83 IRVLEYFAGFYHNQKVVIVIQLEILHAECTLIRNP 117
>gi|449527292|ref|XP_004170646.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Cucumis sativus]
Length = 425
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 279/427 (65%), Positives = 326/427 (76%), Gaps = 5/427 (1%)
Query: 390 RSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDF 449
RSVELTLWGNFC +G RLQ+MCDSG+FP+LAVK+ RVSDFNGK VGTIST+QLFIEPDF
Sbjct: 1 RSVELTLWGNFCQAEGQRLQNMCDSGLFPVLAVKSSRVSDFNGKAVGTISTSQLFIEPDF 60
Query: 450 PEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSAT 509
PEAH L+EWFE+EG++T SVSISR+ SVGR D+RKT+SQIKDE LGT EKPDWITVSAT
Sbjct: 61 PEAHSLREWFEREGRSTLSVSISREVASVGRTDVRKTISQIKDERLGTSEKPDWITVSAT 120
Query: 510 IVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDH 569
+ +IK D+FCYTACPIMIGDR C+KKV NNGDG+W CDRCDQSV ECDYRYILQ QIQDH
Sbjct: 121 VSFIKVDSFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDH 180
Query: 570 TGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETF 629
TGLTWVTAFQE EEIMG+ AK LY LKY +Q+DEKF E++R FTK++ KLK+KEETF
Sbjct: 181 TGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETF 240
Query: 630 SDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSGDSTSFALKAENIIPKPEMTYTGTGN 689
SDEQRV+STVVKAE N+SSE+RF+L+LM+KLK +S+S KAE+ I T + N
Sbjct: 241 SDEQRVRSTVVKAESINFSSESRFLLNLMEKLKPENSSSATPKAESTIHNFGFRDTASEN 300
Query: 690 IGSRQTAPVVANYVGNNSNAGAASGLLANQMGQYGNQYSGSRLPAAGTSAARQSCSSCGA 749
IG Q + N + G NQ QYGNQYS SR + + C+SCG
Sbjct: 301 IGGGQFVSPIRNSTNFSREYGT-----PNQGVQYGNQYSSSRPSPSTPLNSNTYCNSCGG 355
Query: 750 VGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPSLNAAPP 809
GHSS NCPSIMSGP S GGG ++ +SG TS EC+KCH+TGHWARDCP L PP
Sbjct: 356 SGHSSTNCPSIMSGPALSVGGGMYSNQASGPSGGTSGECFKCHQTGHWARDCPGLANVPP 415
Query: 810 AYGSSGI 816
AYG+ G
Sbjct: 416 AYGNRGF 422
>gi|242061678|ref|XP_002452128.1| hypothetical protein SORBIDRAFT_04g020190 [Sorghum bicolor]
gi|241931959|gb|EES05104.1| hypothetical protein SORBIDRAFT_04g020190 [Sorghum bicolor]
Length = 831
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 317/841 (37%), Positives = 487/841 (57%), Gaps = 78/841 (9%)
Query: 2 PVLQVMDLKLVVSKQQQQQQ-------HQQQRFRMVLSDGSRSQQGMLATQRNELVTSGL 54
PVLQV++++ V + + +++R+R++LSDG + Q +LAT N V G
Sbjct: 27 PVLQVLEVRRVATTKSGDASASANPTPSERERYRLILSDGVDAHQAILATAFNPFVRDGT 86
Query: 55 LQIGSVVRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPV--------PAQRPSSNEQ 106
L+ G++V L +F C+ I+++ I+I++ ++++ C IG P Q P+ +
Sbjct: 87 LRKGTIVHLNEFICDTIRDKRIIIIVKIEILQTACALIGNPKNYMAQIQGKVQDPNLSAI 146
Query: 107 PGSVTGNPQSNATGVSL---QHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAG 163
+G P + V+L Q NN D + +G + ++ G
Sbjct: 147 AAQNSGAPGMPESSVALRADQASNNLSYGGPFIDAQGM-VGFSIGRTVERDHSNVFTGGS 205
Query: 164 SGSFSNQSASFSN-PRPEFSRPYA--------------------SNYARTPQAPYMQSPS 202
G+ S Q+ +N P F +P N R + Y Q PS
Sbjct: 206 YGTLSAQNTVNANMVEPRFQQPSLISHQNQGFAVTGTGEALTPPGNAHRRHEHSYQQLPS 265
Query: 203 MYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL 262
Y NR V SE S ++ I++L Y +WTIKARVTAK ++H+NN +G GK+F FDL+
Sbjct: 266 GYINRAPVA-SEPASHVVAISSLKVYQTRWTIKARVTAKTGVKHWNNAKGTGKLFSFDLI 324
Query: 263 DSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLD-MTSM 321
D +GG+IR CF D+FY +E K+YL+S G++KP+QK FN L+NDLEI LD +TS
Sbjct: 325 DGEGGQIRAVCFKEAVDKFYDLIEVDKVYLISSGAVKPSQKRFNPLNNDLEITLDTLTSS 384
Query: 322 VQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRT 381
V++C DD +IP+ Q+ F+ I+++E M+N+S VDL+GVV+ + P+ + RK+GT+TQKRT
Sbjct: 385 VEICSSDDFNIPKVQYSFQQISEIENMDNHSAVDLLGVVTSVGPSVMMTRKDGTQTQKRT 444
Query: 382 LHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTT 441
L LRDMSGRSV +T WG+FC+ +G +LQ C S PILA+ R+SDF+G+ V TI +T
Sbjct: 445 LQLRDMSGRSVGVTFWGDFCDVEGQQLQLQCHSSFNPILALIGARISDFSGRSVSTIGST 504
Query: 442 QLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKP 501
QL I PDFP+A RL++W+ EG T +S+SR+ + +AD+RKT++QIKDE LG + K
Sbjct: 505 QLKINPDFPDAERLRQWYVTEGMTTACLSLSREQFNSVQADVRKTIAQIKDETLG-RNKT 563
Query: 502 DWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYI 561
DWITV A I +++ ++FCY ACP++ ++PCNKKV+++GDG W C+RCD+S C+YRY+
Sbjct: 564 DWITVKAAISHVQTESFCYPACPLIFNEKPCNKKVIDSGDGIWFCERCDKSSGSCEYRYM 623
Query: 562 LQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFK 621
++F+IQDHT TAFQE ++I G +A++L +++ V+ ++ F E++ A + LFK
Sbjct: 624 VKFRIQDHTSTIIATAFQEAGKQIFGRTAQELRTIRNVNHDEALFTEIIEGARWHLNLFK 683
Query: 622 LKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSGDSTSFALKAENIIPKPE 681
LKV+EE+++DEQR+ T++ AE+ + S E+ + + +D+L G S P P
Sbjct: 684 LKVREESYNDEQRIGCTIINAEKLDPSKESNVLFEAIDRLMQGRSG----------PSP- 732
Query: 682 MTYTGTGNIGSRQTAPVVANYVGNNSNAGAASGLLANQMGQYGNQYSGSRLPAAGTSAAR 741
G+ GS +AN G +++ S + Q+G Q G+ R
Sbjct: 733 ------GDQGS------IANKAGFSNSPDGRSAINMCGTNQFGQQ---------GSIDGR 771
Query: 742 QSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDC 801
S +S G S P+ G + G N AG A C+KCH+ GHW+++C
Sbjct: 772 VSTTSAGL---DSEQQPAGGGFTGNNYGSAAGNYGYVAAGNARQGPCFKCHQPGHWSKEC 828
Query: 802 P 802
P
Sbjct: 829 P 829
>gi|357459135|ref|XP_003599848.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
gi|355488896|gb|AES70099.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
Length = 813
Score = 519 bits (1337), Expect = e-144, Method: Compositional matrix adjust.
Identities = 243/457 (53%), Positives = 333/457 (72%), Gaps = 15/457 (3%)
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
IPIAAL+PY GKW IKARVT+KG LRHYN+ G K F FD+LDSDGGE++VTC N V D
Sbjct: 128 IPIAALHPYKGKWAIKARVTSKGHLRHYNSPEGYLKAFSFDVLDSDGGEVQVTCLNDVID 187
Query: 280 QFYHQVEAGKIYLVSRGSLKPA-QKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
FY +E GK+YL+S+ L P K+ HL D EI L+ S V+LC ++D SIP +F
Sbjct: 188 SFYEVIEVGKVYLISKAGLIPVGSKDLKHLKIDWEIMLNSNSTVELCPDEDGSIPMHKFS 247
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
FR I+D+E +E+N+++D+IGVV+ ++ + + R+N E +KR L+L+D SGRSVELTLWG
Sbjct: 248 FRSISDIENIESNTILDVIGVVTSVNSSVLMSRENALEMRKRILNLKDNSGRSVELTLWG 307
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEW 458
CN +G L+ + D+G FP+LAVKAG+V +F GK + I ++LF+ PDFPEA L+ W
Sbjct: 308 ELCNREGQELKDIVDAGGFPVLAVKAGKVIEFRGKSINAIPISRLFVNPDFPEAQSLRLW 367
Query: 459 FEKEGKNTQSVSISRDSLSVG--RADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCD 516
F+++GK++ S SIS+D +S G + ++RKTVSQIKDEGLG +KPDWIT ATI ++K D
Sbjct: 368 FDQDGKDSASSSISKD-ISYGGPKNELRKTVSQIKDEGLGCTDKPDWITTRATISFMKTD 426
Query: 517 NFCYTACPIMIGDRPCNKKVMNNGD-----------GRWHCDRCDQSVVECDYRYILQFQ 565
FCYTACP+MIGDR CNKKV +G+ RW CD C+Q C+YRYILQ Q
Sbjct: 427 VFCYTACPVMIGDRRCNKKVTRSGERCSKKVTKTVNTRWKCDTCNQEFDVCEYRYILQAQ 486
Query: 566 IQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVK 625
I DHTGLT VTAF E E+IMG SAKDLY LKY ++DE+F +++++ F +++F+LK++
Sbjct: 487 IVDHTGLTCVTAFNEAGEDIMGYSAKDLYVLKYEQEDDERFRDIIKSILFNQFVFRLKIQ 546
Query: 626 EETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLK 662
+E +EQ+VK VVKA++ NYS+E++++LDL+ K +
Sbjct: 547 KELCGEEQKVKIIVVKADKVNYSAESKYMLDLISKFE 583
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++QV+ + L+V +++ + LSDG S +A Q N+ V +G ++ GS+V
Sbjct: 22 PLVQVISITLLV----DSDDSLLRKYYLKLSDGVYSHSATIAAQLNDGVGTGRVKEGSIV 77
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPS----SNEQP 107
+L + C I R I+IV ++ I+ IG P P NE+P
Sbjct: 78 KLLDYVCPTIVIRKIIIVHKMETIVLDSQIIGNPKSFVDPELPMVENEEP 127
>gi|242086613|ref|XP_002439139.1| hypothetical protein SORBIDRAFT_09g001250 [Sorghum bicolor]
gi|241944424|gb|EES17569.1| hypothetical protein SORBIDRAFT_09g001250 [Sorghum bicolor]
Length = 663
Score = 516 bits (1330), Expect = e-143, Method: Compositional matrix adjust.
Identities = 257/561 (45%), Positives = 372/561 (66%), Gaps = 30/561 (5%)
Query: 197 YMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKV 256
Y QSP + R V K++ + ++P+A LNPY +W I ARVTAK +LRHY+N RG GKV
Sbjct: 131 YQQSPPGHMKRTPVSKNDA-NHLVPVAQLNPYQTRWKIMARVTAKTDLRHYSNSRGPGKV 189
Query: 257 FHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFL 316
F FDLLD GGEIR TCFN ADQF+ +E K+YL+S+G LKPA K FN L+++ E+ L
Sbjct: 190 FSFDLLDGQGGEIRATCFNVQADQFFDLIEVDKVYLISKGLLKPAMKKFNSLNHEYEVTL 249
Query: 317 DMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTE 376
D + +++C +DD++IPRQQ++FR I+++E +E ++VDLIG+V+ + P++ +MRK+GT+
Sbjct: 250 DHRTSIEVCVDDDSNIPRQQYNFRQISEIENIEAGAIVDLIGIVTSVGPSSIVMRKDGTQ 309
Query: 377 TQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVG 436
TQKRTL L+DMS RS+E+ LWG FC+ +G +LQ +CDSG PIL++K GRV DF+G+ V
Sbjct: 310 TQKRTLQLKDMSFRSLEIILWGKFCDAEGRQLQLLCDSGSNPILSLKGGRVCDFSGRSVV 369
Query: 437 TISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLG 496
TIS+TQL + PDF A RLK+W+ EGKNT +S+S ++ R+ + KT++QIKDE LG
Sbjct: 370 TISSTQLKVNPDFQVAERLKQWYIIEGKNTAFISLSWGISNMSRSHVLKTIAQIKDENLG 429
Query: 497 TKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVEC 556
+KPD+ITV I ++K DNFCY AC + + R CNKKVMNNGDG W CD+C++S+
Sbjct: 430 RSDKPDFITVKGAISHLKTDNFCYPACTMEVNGRLCNKKVMNNGDGTWQCDKCNKSLPNF 489
Query: 557 DYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFT 616
+YRY+L QIQDHTG+T+ TAFQ E I G +A++L+ ++ V+Q+D +F E+++
Sbjct: 490 EYRYLLLCQIQDHTGVTYATAFQAAGEAIFGHTAQELFMIQNVEQDDMRFTEIMQAVLRR 549
Query: 617 KYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSGDSTSFALKAENI 676
+YLFKLK+ EET++ EQRV +++ E+ ET +L + + D +S+
Sbjct: 550 EYLFKLKIYEETYNGEQRVICSIIGVEKL---EETNNLLKDVSRPILKDHSSY------- 599
Query: 677 IPKPEMTYTGTGNIGSRQTAPVVANYVGNNSNAGAASGLLANQMGQYGNQYSGSRLPAAG 736
IP G+ N+ ++Q+ +N G A +G G S + +AG
Sbjct: 600 IPS-----VGSANLEAKQSLLTSSNAYG-----------CATVVGDTGFAQSDG-IWSAG 642
Query: 737 TSAARQSCSSCGAVGHSSMNC 757
A Q+C C GH S +C
Sbjct: 643 RGA--QACFKCNQPGHWSKDC 661
>gi|356551666|ref|XP_003544195.1| PREDICTED: LOW QUALITY PROTEIN: replication protein A 70 kDa
DNA-binding subunit-like [Glycine max]
Length = 424
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 201/320 (62%), Positives = 256/320 (80%)
Query: 255 KVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEI 314
+VF FD++DSDGGEIR TCFNAVADQFY+ +EAGK+YL+SRGS+K AQKNFNHLHND E+
Sbjct: 95 QVFSFDVVDSDGGEIRPTCFNAVADQFYNVIEAGKVYLISRGSIKLAQKNFNHLHNDQEL 154
Query: 315 FLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNG 374
LD+ S++Q +D+ SI F++ PI+++E +ENN++VD+IGVV+ I PT S+MRKNG
Sbjct: 155 TLDVASIIQPFLDDNDSITSHTFNYCPISEIESLENNNIVDVIGVVTSIRPTTSIMRKNG 214
Query: 375 TETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKV 434
T+ QKRTL L+DMSGRSVELTLWGNFC +G RLQ +C +G FPILA KA R++DFNGK
Sbjct: 215 TKVQKRTLXLKDMSGRSVELTLWGNFCIVEGKRLQTICHAGEFPILATKAVRLNDFNGKS 274
Query: 435 VGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEG 494
VGTI+T+QL++E DF EA LK WFE EGK+ ++SIS + ++G+ D+RKT+SQIKDE
Sbjct: 275 VGTIATSQLYVEADFLEACTLKRWFENEGKSVPTLSISTEMSNMGKTDVRKTISQIKDEK 334
Query: 495 LGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVV 554
LGT EKPD I+V + +IK DNFCY CP+ IGDR CNKKV NN DG WHC+RC+Q +
Sbjct: 335 LGTSEKPDRISVFVVVSHIKVDNFCYPGCPLKIGDRQCNKKVTNNADGTWHCERCNQPIS 394
Query: 555 ECDYRYILQFQIQDHTGLTW 574
CD+RY+L QIQDHT +TW
Sbjct: 395 ACDFRYLLSMQIQDHTSITW 414
>gi|242086611|ref|XP_002439138.1| hypothetical protein SORBIDRAFT_09g001240 [Sorghum bicolor]
gi|241944423|gb|EES17568.1| hypothetical protein SORBIDRAFT_09g001240 [Sorghum bicolor]
Length = 878
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 226/505 (44%), Positives = 334/505 (66%), Gaps = 35/505 (6%)
Query: 216 PSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFN 275
P I P++ALNPY +W I ARVTAK +LRHY++ RG GKVF FDLLD GGEIR TCFN
Sbjct: 364 PFCITPVSALNPYETRWKIMARVTAKTDLRHYSSSRGPGKVFSFDLLDGQGGEIRATCFN 423
Query: 276 AVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQ 335
A ADQF+ +E K+YL+S GS+KPA KN+N L+++ EI LD + +++C +DD++IPRQ
Sbjct: 424 AQADQFFDLIEVDKVYLISNGSVKPALKNYNSLNHEYEITLDNKTSIEVCVDDDSNIPRQ 483
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
+++FR I+++E +E +VDLIG+V+ + P+A +MRK+GT+ QKRTL L+DMS RS+E+
Sbjct: 484 EYNFRQISEIENIEAGVIVDLIGIVTSVGPSAIVMRKDGTQAQKRTLQLKDMSVRSMEII 543
Query: 396 LWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRL 455
LWG FC+ +G +LQ +CDSG PIL++K+GRV DF+G+ V TIS+TQL + PDFP A RL
Sbjct: 544 LWGKFCDAEGHQLQLLCDSGSNPILSLKSGRVCDFSGRSVVTISSTQLKVNPDFPVAKRL 603
Query: 456 KEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKC 515
K+W+ EGKNT +S+S+ ++ R + KT++QIKDE LG +KPD+ITV A + ++
Sbjct: 604 KQWYVTEGKNTACISLSQGISNMSRNHVLKTIAQIKDENLGRSDKPDFITVRAVLSHVGA 663
Query: 516 DNFCYTACPIMI-GDRPCN---------KKVMNNGDGRWHCDRCDQSVVECDYRYI---- 561
DNFCY AC + + G R C+ KK++ R ++V++ R +
Sbjct: 664 DNFCYQACTLELNGKRCCSFEFNGKRCYKKLVRKPITVIDAIRALKTVIDA-IRALKTVI 722
Query: 562 --LQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFG---EVVRNATFT 616
+ I+DHTG T+ TAFQE E I G +A++L+ ++ V+Q +E+F E+++ +
Sbjct: 723 DGIVIDIKDHTGTTYATAFQEAGEVIFGHTAQELFMIRNVEQGEERFKEFTEIMQAIIWR 782
Query: 617 KYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSGDSTSFALKAENI 676
+YLFKLKV E+T++ EQRVK T++ E+ ET +L + + D S+
Sbjct: 783 EYLFKLKVDEKTYNGEQRVKCTIIGVEKL---EETNNLLKDVSRPILKDDLSYT------ 833
Query: 677 IPKPEMTYTGTGNIGSRQTAPVVAN 701
P TG+ N+ +RQ+ +N
Sbjct: 834 -PN-----TGSANLEARQSKLTSSN 852
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 8/142 (5%)
Query: 32 SDGSRSQQGMLAT---QRNELVTSGLLQIGSVVRLTKFTCNVIQNRMIVIVMDLDVIIDK 88
+DG+ + + ML + N V G ++ GS++ L +FTCN IQNR ++IV L V+ +
Sbjct: 273 ADGNGTLKPMLQVVDVRMNTCVLDGSIRKGSIIHLQEFTCNTIQNRRLIIVTKLYVLQSE 332
Query: 89 CDPIGKPVPAQ-RPSSNEQPGSVTGNPQSNA----TGVSLQHHNNTRVSQLPGDTDAVPA 143
C+ +G P P + R NEQ ++ N ++ + T VS + TR + T
Sbjct: 333 CNIMGNPKPYKMRNQPNEQVTNLPPNAENKSPFCITPVSALNPYETRWKIMARVTAKTDL 392
Query: 144 ARHVGSNLPPNYFKPEVGAGSG 165
+ S P F ++ G G
Sbjct: 393 RHYSSSRGPGKVFSFDLLDGQG 414
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDG-SRSQQGMLATQRNELVTSGLLQIGSV 60
PVLQ+ D + + R+R+ LSDG +R Q GMLA N LV G L+ G+V
Sbjct: 63 PVLQLAD----APQMAGGAASESGRYRVALSDGGARLQPGMLAASLNHLVARGALRRGTV 118
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKP 95
+R+ ++ + + I+IV+ L+++ +C I P
Sbjct: 119 IRVLEYFAGFSRTQRIIIVIQLEILQAECMLIRSP 153
>gi|356554165|ref|XP_003545419.1| PREDICTED: LOW QUALITY PROTEIN: replication protein A 70 kDa
DNA-binding subunit-like [Glycine max]
Length = 450
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 203/342 (59%), Positives = 259/342 (75%), Gaps = 5/342 (1%)
Query: 238 VTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGS 297
V A G R + +VF FD+ D DGGEIR TCFN VADQFY+ +EAGK+YL+S+GS
Sbjct: 74 VFAHGVARFLSCAYWVLQVFSFDVADFDGGEIRATCFNVVADQFYNVIEAGKVYLISKGS 133
Query: 298 LKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLI 357
+KPAQKNFNHLHND E+ LD+ S++Q +D+ SI Q F++ PI+++E +ENNS+VD+I
Sbjct: 134 IKPAQKNFNHLHNDQELTLDVASIIQPFLDDNDSITSQTFNYXPISEIESLENNSIVDVI 193
Query: 358 GVVSY-----ISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMC 412
GVV+ I PT S+MRKNGTE QKRTL L+DMSGRSVELTLWGNFC +G RLQ +C
Sbjct: 194 GVVTLLDRTSIRPTTSIMRKNGTEVQKRTLQLKDMSGRSVELTLWGNFCIVEGQRLQTIC 253
Query: 413 DSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSIS 472
D+G FP+LA KA R++DFNGK V TI+T+QL++E DFPEA LK WF+ E K+ ++SIS
Sbjct: 254 DAGEFPVLATKAVRLNDFNGKYVETIATSQLYVEADFPEACTLKRWFKNEEKSVPTLSIS 313
Query: 473 RDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPC 532
R+ ++G+ D+RKT+S IKDE LGT EKPDWI+V + +IK DNFCY C + IGDR C
Sbjct: 314 RELSNLGKTDVRKTISXIKDEKLGTSEKPDWISVFVVVSHIKVDNFCYPGCLLKIGDRQC 373
Query: 533 NKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTW 574
NKKV NN DG HC+RC+QS+ CD+RY+L QI DHT +TW
Sbjct: 374 NKKVTNNADGTXHCERCNQSIDACDFRYLLSMQIXDHTSITW 415
>gi|307109191|gb|EFN57429.1| hypothetical protein CHLNCDRAFT_30347 [Chlorella variabilis]
Length = 721
Score = 411 bits (1056), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/459 (44%), Positives = 303/459 (66%), Gaps = 9/459 (1%)
Query: 210 VGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEI 269
V ++E PS I+PI ALN Y +WTIKARVT K ++R Y N RG+GK F FDLLD+ GGEI
Sbjct: 179 VARNEAPSHIMPINALNSYQNRWTIKARVTNKSDIRRYTNARGEGKFFSFDLLDAQGGEI 238
Query: 270 RVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDD 329
RV C+N D++ ++ GK+YL+S+ SL+ + NFN + EI L+ +S+V+ C E+D
Sbjct: 239 RVVCWNDQCDRWEPVIDQGKVYLISKASLRNKRGNFNQTRHQYEIHLENSSVVEACNEED 298
Query: 330 ASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSG 389
IP F+F I VE + +D+IGVV + ++ +++GT+TQKR+L +RD S
Sbjct: 299 -DIPHIYFNFCKIAAVEDTPPGNSLDVIGVVENVMDWVTITKRDGTDTQKRSLTIRDDSN 357
Query: 390 RSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEP-D 448
RS+ELTLWG + N+ G LQ +GV PI+A+K+ RV DFNGK + T++++ + ++P D
Sbjct: 358 RSIELTLWGKYANEPGDHLQAAFQNGVHPIVAIKSARVGDFNGKTLSTVASSTVMVDPLD 417
Query: 449 FPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSA 508
PEA +L++W++ G + ++SR S GR D R T++QIKDEGLG EKPDW+ VS
Sbjct: 418 VPEAVQLRQWYDSGGATMVAEALSRP--SGGRNDRRITLAQIKDEGLGLGEKPDWVLVSG 475
Query: 509 TIVYIKCDNFCYTACPIMIGD-RPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQ 567
I +++ +N Y ACP + + R CNKK+ +N DG W C+RC+ + E +YRY+L FQ+
Sbjct: 476 AITFLRNENMFYAACPNKLAEGRQCNKKLQDNQDGTWSCERCNGN-FEPEYRYMLNFQLS 534
Query: 568 DHTGLTWVTAFQECAEEIMGMSAKDLYSLKY-VDQNDEKFGEVVRNATFTKYLFKLKVKE 626
DHTG WVTAFQE +IMG SA DL ++ +D+ D F +++ F YL KLKV
Sbjct: 535 DHTGEAWVTAFQEQGLDIMGRSAADLKDMQQTLDEGD--FSSYMQDLNFRHYLMKLKVTN 592
Query: 627 ETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSGD 665
E ++DE +++++ V N++ E + +LD++ K++ G+
Sbjct: 593 EVYNDETKLRTSAVSVMAPNFTQEGKALLDMIGKMERGE 631
>gi|255076569|ref|XP_002501959.1| predicted protein [Micromonas sp. RCC299]
gi|226517223|gb|ACO63217.1| predicted protein [Micromonas sp. RCC299]
Length = 867
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 242/697 (34%), Positives = 373/697 (53%), Gaps = 61/697 (8%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
MP LQ+ DL+ + SK +RFR++LSDG ML++Q N LV G L+ +V
Sbjct: 22 MPTLQIADLRALQSKDGNSDD-SNKRFRVMLSDGQHYVTAMLSSQLNPLVLDGKLEKFTV 80
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPA-QRPSSNEQPGSVTGNPQSNAT 119
V+LT++ C I NR I+I + L+V D IG+P+ Q SS + P G Q +A
Sbjct: 81 VKLTEYLCQTINNRKIIIALQLNVGGKPLDIIGQPIACEQAASSGDAPQPPMGGNQPSA- 139
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPE--VGAGSGSFSNQSASFSNP 177
R +G+ NY +P+ G G++ +F N
Sbjct: 140 ------------------------PRTLGAG--GNYGQPQNTYGGAGGNYGQPQQTFGNY 173
Query: 178 RPEFSRPYAS------------------NYARTPQAPYMQS-PSMYANRGLVGKSEVPSR 218
+Y P Q+ P Y+NRG V ++E P R
Sbjct: 174 GNYGGGVPGGNYGAPPGGGQPPAGQPAPSYGGYGANPNQQNIPPQYSNRGAVMRNEAPHR 233
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI++LNPYM +WTI+ RVT + +R ++N RGDGKV + DLLDS+GGEI+ CFN A
Sbjct: 234 ITPISSLNPYMNRWTIRVRVTNQPAIRTWHNARGDGKVLNVDLLDSEGGEIKAVCFNDTA 293
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDA--SIPRQQ 336
++F + G++Y +S+G++ + + EI LD TS+V + A SI +
Sbjct: 294 EKFSQVFQGGRVYDISKGAISQVKNKKYSGGAEFEIRLDNTSLVDEVTDPQAVASIKKIH 353
Query: 337 FHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTL 396
++F+ I +E ++D+IGVV + A++M+++G ET KR++H+RD SG SVELT+
Sbjct: 354 YNFQKIASIEDAMVGGMIDVIGVVHTVGDLATIMKRDGGETSKRSVHIRDDSGASVELTM 413
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
W D G +L+ M + G P+LAVK GRV +F GK +GT+ +T + + PD EA +L+
Sbjct: 414 WAPHAVDIGGKLEAMVNGGEHPVLAVKNGRVGEFQGKNIGTVGSTNIDVNPDLTEAAKLR 473
Query: 457 EWFEKEGKNTQSV-SISRDSLSVGRADIRKTVSQIKDEGLGTKEKPD-WITVSATIVYIK 514
W++ EG T +V ++ G+ D +++Q+KDE P W+ I YIK
Sbjct: 474 HWYDAEGGATATVATLGGGGGGGGKGDRCVSIAQLKDEIAQIGANPPFWVQCRCHITYIK 533
Query: 515 CDNFC---YTACPIMIGDRPCNKKV-MNNGDGRWHCDR-CDQSVVECDYRYILQFQIQDH 569
Y ACP+ GDR C KK+ + G W+C+R + V C++RYIL + DH
Sbjct: 534 APQDSGPYYPACPLQNGDRMCQKKLRFDEAQGSWNCERHSGEHVPHCEWRYILNMTVSDH 593
Query: 570 TGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETF 629
TG WV+AF + + IMGM A +L+ L + N + + ++NA FT ++ KLKVKE+ +
Sbjct: 594 TGQHWVSAFGDQGDVIMGMKASELHRL--YNDNHAAYEQALQNANFTSHMMKLKVKEDNY 651
Query: 630 SDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSGDS 666
+ E R K+ + + E +Y +E++ +LD + KL +G S
Sbjct: 652 NGETRPKTELSRIEVIDYVAESKRMLDKIAKLHAGQS 688
>gi|302836243|ref|XP_002949682.1| hypothetical protein VOLCADRAFT_104448 [Volvox carteri f.
nagariensis]
gi|300265041|gb|EFJ49234.1| hypothetical protein VOLCADRAFT_104448 [Volvox carteri f.
nagariensis]
Length = 900
Score = 387 bits (995), Expect = e-104, Method: Compositional matrix adjust.
Identities = 197/478 (41%), Positives = 290/478 (60%), Gaps = 16/478 (3%)
Query: 201 PSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFD 260
P Y +G + + E P RI+PI+ALNPY+ +W I+ RVT+KGELR + N +G+GKVF FD
Sbjct: 227 PPQYQAQGAIARDEAPPRIMPISALNPYIARWAIRGRVTSKGELRRWTNVKGEGKVFSFD 286
Query: 261 LLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTS 320
LLD GG+IR T F A AD+F+ +E G IY +S+ SL + FN +D EI LD S
Sbjct: 287 LLDLAGGDIRATAFGAEADKFFETIEVGAIYQISKASLTQKKPQFNPTSHDYEIRLDRNS 346
Query: 321 MVQLCYEDDAS--IPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQ 378
+V+ ED + IP F+FR I D+E E S+VD+IG+V S+ R+ G ETQ
Sbjct: 347 LVERVPEDKETSQIPSISFNFRRIADLETAEAGSMVDIIGLVETCDAWQSITRRTGEETQ 406
Query: 379 KRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTI 438
KR++ +RD SGRS+E+TLWG N+ G +++ M SG P+ A KA RV DFNGK + TI
Sbjct: 407 KRSMVVRDESGRSIEVTLWGPLVNNPGDQIEQMVRSGARPVFAAKALRVGDFNGKTLSTI 466
Query: 439 STTQLFIEP-DFPEAHRLKEWFEKEGKNTQSVSIS---RDSLSVGRADIRKTVSQIKDEG 494
++ L I+P D P A RL+ W++ G++ S+S + G+AD R T S IK E
Sbjct: 467 GSSVLRIDPMDLPAAQRLRSWYDGGGRSQAVNSLSSAGMGGGAGGKADRRTTFSAIKGEH 526
Query: 495 LGTKEKPDWITVSATIVYIKCDN-------FCYTACPIMIGDRPCNKKVMNNGDGRWHCD 547
LGT KPDWITVSA + +K D+ Y +CP RPC KK+M+ G G W+C+
Sbjct: 527 LGTSGKPDWITVSAVVDMVKTDSQGGGPSAVVYPSCPHDFNGRPCQKKMMDIGGGNWNCE 586
Query: 548 RCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFG 607
RC+ S +RY++ DHT ++TAF + + I G +A ++ L+ +N ++F
Sbjct: 587 RCNYSTENPAWRYLVSMSACDHTSKQYLTAFGDAGDAIFGRTAAEVRQLEA--ENTQEFD 644
Query: 608 EVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERY-NYSSETRFILDLMDKLKSG 664
+ + FT ++F+LKV E+ ++DE R+K ++ + ER ++ E +L + L++G
Sbjct: 645 RLTESIRFTSFIFRLKVAEDHYNDEARIKVSIYRLERLTDFVKEGNLMLQYIKALENG 702
>gi|159491651|ref|XP_001703773.1| replication protein A, 70 kDa DNA-binding subunit [Chlamydomonas
reinhardtii]
gi|158270454|gb|EDO96299.1| replication protein A, 70 kDa DNA-binding subunit [Chlamydomonas
reinhardtii]
Length = 451
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 197/451 (43%), Positives = 274/451 (60%), Gaps = 9/451 (1%)
Query: 201 PSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFD 260
P+ Y G + + + P R IPI+ALNPY +W I+ARVT+KGELR + N RG+GKVF FD
Sbjct: 3 PANYQANGAIARDDAPPRFIPISALNPYTARWAIRARVTSKGELRRWTNVRGEGKVFSFD 62
Query: 261 LLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTS 320
LLD DGGEIR T F A AD+F+ VEAG IY +S+ SL + FNH ++ EI LD S
Sbjct: 63 LLDKDGGEIRATAFGAEADKFFEVVEAGAIYQISKASLTNKRPQFNHTNHQYEIKLDRNS 122
Query: 321 MVQLCYED--DASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQ 378
MV+ ED + IP ++FR I D+E E +VVD+IGVV P ++ R+ G ETQ
Sbjct: 123 MVERVAEDPETSQIPTISYNFRRITDLETAEAGTVVDIIGVVETCEPWQTITRRTGEETQ 182
Query: 379 KRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTI 438
KR++ +RD SGRS+E+TLWG N+ G +++ M G P+LA KA RV D+NGK + T+
Sbjct: 183 KRSMVVRDDSGRSIEVTLWGALVNNPGDQIEQMVRGGGRPVLAAKALRVGDYNGKTLSTV 242
Query: 439 STTQLFIEP-DFPEAHRLKEWFEKEGK--NTQSVSISRDSLSVGRADIRKTVSQIKDEGL 495
+ L ++P D P A R++ W+ GK S+S + GR D R +S IKDE L
Sbjct: 243 GASALRLDPMDLPAAQRVRGWYNGGGKAQAVNSLSAAGGGGGGGRTDRRTVLSAIKDENL 302
Query: 496 GTKEKPDWITVSATIVYIK--CDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSV 553
G K DW+ VSA + IK Y +CP RPC KK+M+ G G W+CDRC S
Sbjct: 303 GRSGKADWVNVSAVLDMIKGGASAVVYPSCPHDFNGRPCQKKMMDVGGGNWNCDRCQFST 362
Query: 554 VECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNA 613
+RY++ DHT +TAF + + I G SA ++ +++ VD+ E F + +
Sbjct: 363 ENPAWRYLVSLSACDHTAKQSLTAFGDAGDAIFGRSATEVRNME-VDRPQE-FDRLAESI 420
Query: 614 TFTKYLFKLKVKEETFSDEQRVKSTVVKAER 644
FT + F+LKV E+ ++DEQR+K ++ K ER
Sbjct: 421 RFTPFFFRLKVAEDNYNDEQRIKVSIYKMER 451
>gi|303276565|ref|XP_003057576.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460233|gb|EEH57527.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 835
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 231/678 (34%), Positives = 368/678 (54%), Gaps = 32/678 (4%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P+LQV DL+ + +K ++ + + RFR++LSDG+ ML +Q N V L+ +VV
Sbjct: 23 PILQVADLRALQNKDEKAGANAEPRFRVMLSDGTHYVTAMLTSQLNSHVIENRLKKFTVV 82
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGV 121
+L ++ N +Q R I+I + L I D IG+PV A N P N G
Sbjct: 83 QLEEYFSNEVQGRKIIIALKLTPIDTPPDIIGQPVSATDADKNAAPPQQQQQQHPNPGGY 142
Query: 122 SLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEF 181
PG P+A G+ NY P + +G++ +
Sbjct: 143 GAN----------PG-YGQQPSAPGYGNAPTGNYGAPPPPSANGNYGGGNGGGYGAGAYR 191
Query: 182 SRPYASNYARTPQAPYMQSPSMYA-NRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTA 240
+ P PS A RG +++ P++I PI++LNPY +WTI+ARVT
Sbjct: 192 GDQGRGGGGGYGEPP----PSYGAYGRGPTARNDAPAKISPISSLNPYNNRWTIRARVTN 247
Query: 241 KGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKP 300
E+R Y+N +GDGKVF+ +LLD++GGEI+ F A++F AG +Y +S+G ++P
Sbjct: 248 NPEIRTYHNHKGDGKVFNVELLDAEGGEIKAVAFGDTAERFADVFRAGSVYELSKGQIRP 307
Query: 301 AQKNFNHLHNDLEIFLDMTSMVQLCYEDD----ASIPRQQFHFRPINDVEGMENNSVVDL 356
+N + E+ LD + V+ DD SI R + F+ I DV+ + + S+VD+
Sbjct: 308 V-RNPKFSVGEFEMMLDHNTEVREI--DDPAVVGSIKRVNYAFKKIADVDHISSGSLVDV 364
Query: 357 IGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGV 416
VV ++ ++M+++G ET KR++ LRD SG S+ELTLW D G RL+ + + G
Sbjct: 365 CAVVHHVGELNTIMKRDGGETSKRSITLRDDSGASIELTLWAPQALDIGGRLEGLVNDGD 424
Query: 417 FPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQ--SVSISRD 474
P++A+K GRV DF GK +GTI+++++ I PD EA RL+ W++ G + + S +
Sbjct: 425 HPVIAIKNGRVGDFQGKNIGTINSSRVDINPDVDEAARLRHWYDTGGATAEVKAFSGAGA 484
Query: 475 SLSVGRADIRKTVSQIKDEGLGTKEKPD-WITVSATIVYIK-CDNFC-YTACPIMIGDRP 531
S GR D T++Q+K+E P W+ + Y+K D C Y ACP+ G+R
Sbjct: 485 SGGGGRGDRCVTIAQLKEEIARDGATPAFWVQCRCHVTYLKSSDAGCFYPACPLRNGERM 544
Query: 532 CNKKV-MNNGDGRWHCDR-CDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMS 589
C KK+ + G W+C+R + V C++RYI+ + DHTG WV+AF + + IMGM+
Sbjct: 545 CQKKLRYDEAMGTWNCERHAGEHVPNCEWRYIINMTVADHTGQQWVSAFGDTGDVIMGMT 604
Query: 590 AKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSS 649
A L L +D N + + + + +A F ++L K KV ++T++DE RVK ++ K + +Y S
Sbjct: 605 AGALKEL--MDTNYDAYEKAIADANFKQFLMKFKVADDTYNDETRVKVSLNKLDAIDYVS 662
Query: 650 ETRFILDLMDKLKSGDST 667
E++ +LD + KL+ G+S
Sbjct: 663 ESKRMLDQIGKLRRGESV 680
>gi|156369841|ref|XP_001628182.1| predicted protein [Nematostella vectensis]
gi|156215152|gb|EDO36119.1| predicted protein [Nematostella vectensis]
Length = 626
Score = 363 bits (931), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 227/669 (33%), Positives = 362/669 (54%), Gaps = 82/669 (12%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQ-QGMLATQRNELVTSGLLQIGSV 60
PV Q++ LK K Q +Q R+R+VLSDG MLATQ N+ VT G +++ +V
Sbjct: 28 PVFQILGLK----KIQPKQGDASDRYRLVLSDGVLIHTSAMLATQLNDKVTDGEIEVKAV 83
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
VRL K+ CN+IQ R ++I+++L + ++E PG + GNP++ A
Sbjct: 84 VRLDKYICNIIQETRKVLILLELTTV---------------KRASEVPGKI-GNPRNAA- 126
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
NN Q + +A PA ++VG GSF Q+ NP
Sbjct: 127 ------DNNAGGQQ---NGNAAPAPKNVGG---------------GSFGGQN----NP-- 156
Query: 180 EFSRPYASNYARTPQAPYMQSPSMY-----ANRGLVGKSEVPSRIIPIAALNPYMGKWTI 234
P A+T + S Y NRG G V PI+ L PY +WTI
Sbjct: 157 ----PAQRQQAQTFGSKGFGGGSSYKSNQPVNRGGDGAKTV----FPISGLTPYQNRWTI 208
Query: 235 KARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVS 294
+AR+T+K +R +NN RG+G++F+ +++D + GEIR T FN D+FY +E K++ ++
Sbjct: 209 RARITSKSNIRTWNNSRGEGRLFNVEMVD-ESGEIRATGFNEAVDKFYQMLEVDKVFYIT 267
Query: 295 RGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVV 354
+GSL+ A K ++ + ND E++L+ ++++ C E ++P Q++F I D+E + + +V
Sbjct: 268 KGSLRTANKQYSSIRNDYEMYLNNDTIIEPCNET-CNLPTLQYNFVNIGDLENINKDQIV 326
Query: 355 DLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCD 413
D++GVV+ + A + K + KR + L D S +SV TLWG D+ + +
Sbjct: 327 DILGVVTNVGDLAQITTKTTNKQVSKRDITLLDRSEKSVTATLWG----DEAEKFEE--H 380
Query: 414 SGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEP-DFPEAHRLKEWFEKEGKNTQSVSIS 472
+G P+LA++ +VSDF G+ + ++++ + + P D EA L+ W++ GKN + SIS
Sbjct: 381 AGKNPVLAIRGAKVSDFGGRSLSVLNSSNMRVNPVDMKEAQVLRGWYDNTGKNNEVASIS 440
Query: 473 RDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPC 532
S G K +SQIK+E LG EK D+I+V VY + +N Y ACP C
Sbjct: 441 GQRYSAGGGGPLKFLSQIKNEQLGMGEKADYISVKGVCVYFRRENCMYKACP----SEEC 496
Query: 533 NKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKD 592
NKKV+ G ++C++C + YR IL + D TG WVT FQE AE ++G SA D
Sbjct: 497 NKKVIEEDSG-FYCEKCGRKYPNYKYRLILSAHLADFTGSQWVTCFQESAEALLGRSASD 555
Query: 593 LYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETR 652
L +K +Q++ +F +V ++ F + FK++ K ET+++E R+K +VV NY E++
Sbjct: 556 LGQMKE-NQDEAQFDQVFASSEFKLHTFKIRAKMETYNEETRLKCSVVNVVPVNYKQESK 614
Query: 653 FILDLMDKL 661
++D + KL
Sbjct: 615 RLIDEVKKL 623
>gi|348540235|ref|XP_003457593.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Oreochromis niloticus]
Length = 665
Score = 361 bits (927), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 231/693 (33%), Positives = 366/693 (52%), Gaps = 84/693 (12%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
PVLQ+++++ Q RFR+++SDG S +LATQ N L LL V
Sbjct: 22 PVLQLLNIR------QISNASGPPRFRLMMSDGQHSLTSCLLATQLNYLSDENLLVPNCV 75
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
L K N + + R +V+VMD+D++ S E+ G GNP T
Sbjct: 76 CLLKKTVNNTLADGRRVVVVMDMDIL----------------KSAEEAGGKIGNPTPYNT 119
Query: 120 GVSLQH----HNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFS 175
+ ++T V + P + AVP + NYF P G G GSF+ Q+ +
Sbjct: 120 DGKMSSPQKVSSSTYVPESP-PSAAVPGPSYR------NYFSPR-GRG-GSFTGQAPMKA 170
Query: 176 NP------------------RPEFSRPYASNYAR-------TPQAPYMQSPSMYANRGLV 210
+P P + P ++ + T + M++ M AN
Sbjct: 171 SPMKASPMKASPMKASPMKASPMKASPMKASAIKASPSKGLTVKVSPMKASPMKANSASP 230
Query: 211 GKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIR 270
G S +++IPIA+LNPY KWTI+ARVT K +R ++N RG+GK+F F+++D + GEIR
Sbjct: 231 GSS---AKVIPIASLNPYQSKWTIRARVTNKSSIRTWSNSRGEGKLFSFEIVD-ESGEIR 286
Query: 271 VTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDA 330
+T FN D+F+ VE GK+Y +S+ +LKPA K + L ND E+ L S + C +D+
Sbjct: 287 ITAFNKEVDKFFSLVEQGKVYYISKATLKPANKQYTTLKNDYEMTLHAHSSIVPC-DDNQ 345
Query: 331 SIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGR 390
SIP F PI ++E + ++++D+IG+ + + KN E KR L + D +G+
Sbjct: 346 SIPTVHCDFVPIAELENRDKDAIIDVIGICKSAEDVSRITTKNSREVSKRALSIIDQTGK 405
Query: 391 SVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFP 450
V +TLWG + D P++A+K R+SDF G+ + + ++ + + PD P
Sbjct: 406 VVTVTLWGEEAEN--------FDGSTQPVVAIKGARLSDFGGRSLSALFSSTVMVNPDIP 457
Query: 451 EAHRLKEWFEKEG--KNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSA 508
+A RL+ W+++EG N+QS++ +R S G KT+S IK+E +G EK + + A
Sbjct: 458 QAFRLRAWYDREGFAINSQSLTETR-SAGTGLNVNWKTLSDIKNEDMGHGEKAQYFSCVA 516
Query: 509 TIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQD 568
T++YI+ +N Y ACP CNKKV++ +G + C++C++ YR +L + D
Sbjct: 517 TVLYIRKENCLYQACP----SADCNKKVIDQQNGLYRCEKCNREFPNFKYRLLLSANLAD 572
Query: 569 HTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEET 628
WVT FQE AE ++G SA+ L L+ D ++ F EV + A FT ++FK +VK ET
Sbjct: 573 FGDNQWVTCFQETAEALLGHSAETLGHLR--DTDEAAFDEVFQKANFTTHIFKNRVKLET 630
Query: 629 FSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
++DE RVK TV++ + ++ +R +L + KL
Sbjct: 631 YNDESRVKVTVMEVQPVDHREYSRRLLQNIYKL 663
>gi|449265984|gb|EMC77111.1| Replication protein A 70 kDa DNA-binding subunit, partial [Columba
livia]
Length = 607
Score = 356 bits (913), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 237/665 (35%), Positives = 352/665 (52%), Gaps = 91/665 (13%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
PVLQV++ + + + + R+RM++SDG + MLATQ N LV L +
Sbjct: 13 PVLQVINTRAIATG------NGPPRYRMLMSDGVNTLSSFMLATQLNSLVEEERLAAHCI 66
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVI--IDKCD-PIGKPVPAQRPSSNEQPGSVTGNPQS 116
++ KF N +++ R +VI+MDL+V+ DK IG PVP ++ + NP
Sbjct: 67 CQVNKFYVNSLKDGRRVVILMDLNVLKTADKVGGNIGNPVPYNEGQGQQRSSAPAANP-- 124
Query: 117 NATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSN 176
A G Q + N V A PAA P Y P SNQ
Sbjct: 125 -APGKPQQQNGNVSV--------AGPAA--------PKYHAP---------SNQ------ 152
Query: 177 PRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKA 236
F + A N +TP G S+V +++PIA+LNPY KWTI A
Sbjct: 153 ----FGKASAPNLLKTP-----------------GGSQV--KVVPIASLNPYQSKWTICA 189
Query: 237 RVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG 296
RVT KG++R ++N RG+GK+F +L+D + GEIR T FN AD+F+ +E K+Y S+G
Sbjct: 190 RVTQKGQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNDQADKFFPLIELNKVYYFSKG 248
Query: 297 SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDL 356
+LK A K + + ND EI + V C +D +P QF F I+D+E +S+VD+
Sbjct: 249 TLKSANKQYTAIKNDYEITFTSETSVVPC-DDAQHLPSVQFDFVSISDLENTPKDSIVDV 307
Query: 357 IGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCND-DGLRLQHMCDS 414
IG+ SY T +++ N E KR +HL D SG+ V TLWGN DG R
Sbjct: 308 IGICKSYEDVTKIIVKANNREVSKRNVHLMDTSGKLVTATLWGNEAEQFDGSRQ------ 361
Query: 415 GVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFE--KEGKNTQSVSIS 472
P++A+K RVSDF G+ + +S++ + I PD PEA +L+ W+E EG+ + SIS
Sbjct: 362 ---PVIAIKGARVSDFGGRSLSVLSSSTVIINPDSPEAFKLRGWYEFDSEGQLLECTSIS 418
Query: 473 --RDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDR 530
R L+ G KT+ + K E LG +K D+ + T+V+++ +N Y ACP +
Sbjct: 419 DVRGGLAAGANTNWKTLFEAKAENLGQGDKADYFSCVGTVVHLRKENCMYQACP----SQ 474
Query: 531 PCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSA 590
CNKKV++ +G + C++CD+ YR +L I D WVT FQ+ AE I+G A
Sbjct: 475 DCNKKVIDQQNGLYRCEKCDREFPNFKYRMMLLVTIADCLEYQWVTCFQDTAEFILGQKA 534
Query: 591 KDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSE 650
L LK ++N++ F EV +NA F Y F+++VK ET++DE R+K+T V + NY
Sbjct: 535 AFLGELK--EKNEQAFEEVFQNANFNTYEFRIRVKLETYNDESRIKATAVDVKPVNYREY 592
Query: 651 TRFIL 655
++ ++
Sbjct: 593 SKRLI 597
>gi|432895940|ref|XP_004076236.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Oryzias latipes]
Length = 655
Score = 355 bits (910), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 218/670 (32%), Positives = 358/670 (53%), Gaps = 48/670 (7%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQ+++++ Q RFR+++SDG + +L TQ N L LL +
Sbjct: 22 PLLQLLNIR------QMTSNSGLPRFRLMMSDGQHALSSFLLTTQLNHLPEQKLLVQHCI 75
Query: 61 VRLTKF-TCNVIQNRMIVIVMDLDVIIDKCDP---IGKPVPAQRP---SSNEQPGSVTGN 113
L K T + R V VMD++V+ + IG P P R SS + S T
Sbjct: 76 CMLKKVVTSTLADGRTAVTVMDMEVVQSAEETGGRIGNPTPYNRDGQMSSPAKKSSATLE 135
Query: 114 PQSNATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSAS 173
P S++ + +T S+ AA+ +N P + +N
Sbjct: 136 PDSSSATAPGPSYRSTSFSR-------SNAAQSSPTNSP-------MKVSPMKDTNSPMK 181
Query: 174 FSNPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWT 233
FS P + + P + A+ +P SP+ N + S P ++ PI+ LNPY KWT
Sbjct: 182 FS-PAKDTNSPMKFSPAKDTNSPMKSSPAKDTNSPMKASSSSPMKVFPISTLNPYQSKWT 240
Query: 234 IKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLV 293
I+ARVT K +R ++N RG+GK+F F+++D + GEI++T FN D+F+ +E GK+Y +
Sbjct: 241 IRARVTNKSNVRQWSNSRGEGKLFSFEVVD-ESGEIKITAFNNEVDKFFSLLEQGKVYYI 299
Query: 294 SRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSV 353
S+ +LK A K ++ L ND E+ L S + C ED+ SIP +F I ++E + +++
Sbjct: 300 SKATLKVANKQYSTLKNDYEMTLHAHSSIVPC-EDNQSIPTMNCNFVQIEELENRDKDAI 358
Query: 354 VDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCD 413
+D+IG+ + + KN E KR LHL D SG+ V TLWG ++ + D
Sbjct: 359 IDVIGICKKAEDVSRITTKNSREVSKRALHLIDSSGKEVTATLWG----EEAEKF----D 410
Query: 414 SGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGK--NTQSVSI 471
P++A+K R+SDF G+ + + ++ + + PD PEA RL+ W+++EG N+QS++
Sbjct: 411 GSGQPVVAIKGARLSDFGGRSLSALFSSTIMVNPDIPEAFRLRAWYDREGYAVNSQSLTE 470
Query: 472 SRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRP 531
R + S R + KT+S +K+E +G ++K ++ + AT+VY++ +N Y ACP
Sbjct: 471 RRSTNSGSRMNW-KTLSDVKNENMGHEDKAEYFSCLATVVYMRKENCLYQACP----SAD 525
Query: 532 CNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAK 591
CNKKV+ +G + C++C++ + YR++L + D WVT FQE AE ++G SA+
Sbjct: 526 CNKKVIIQHNGLYRCEKCNREFSDFKYRFLLSANLADFGDNQWVTCFQETAEVLLGHSAQ 585
Query: 592 DLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSET 651
L L+ D+ F EV + A F ++FK +VK ET++DE RVK TV++ ++ +
Sbjct: 586 TLGQLRETDE--AAFDEVFQKANFRTHIFKNRVKLETYNDESRVKVTVMEVLPVDHREYS 643
Query: 652 RFILDLMDKL 661
R +L + +L
Sbjct: 644 RRLLSNIRRL 653
>gi|380815388|gb|AFE79568.1| replication protein A 70 kDa DNA-binding subunit [Macaca mulatta]
gi|383420567|gb|AFH33497.1| replication protein A 70 kDa DNA-binding subunit [Macaca mulatta]
gi|384943584|gb|AFI35397.1| replication protein A 70 kDa DNA-binding subunit [Macaca mulatta]
Length = 616
Score = 354 bits (909), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 226/660 (34%), Positives = 346/660 (52%), Gaps = 81/660 (12%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQV++++ + + + R+R+++SDG + MLATQ N LV L +
Sbjct: 23 PILQVINIRPITTG------NSPPRYRLLMSDGLNTLSSFMLATQLNPLVEQERLSSNCI 76
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
++ +F N +++ R +VI+M+L+V+ S E G GNP
Sbjct: 77 CQIHRFIVNTLKDGRRVVILMELEVL----------------KSAEAVGVKIGNPVPYNE 120
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
G Q S + P +H S G+GS +++ S
Sbjct: 121 GHG-QPQAAPPASAGSPAASSKPQQQHGSS-------------GAGSTVSKAYGASKTFG 166
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVT 239
+ P SN + Q S+++PIA+L PY KWTI ARVT
Sbjct: 167 KAGGPSLSNTSGGTQ----------------------SKVVPIASLTPYQSKWTICARVT 204
Query: 240 AKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLK 299
K ++R ++N RG+GK+F +L+D + GEIR T FN D+F+ +E K+Y S+G+LK
Sbjct: 205 NKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLK 263
Query: 300 PAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGV 359
A K F + ND E+ + + V C EDD +P QF F I+D+E +S+VD+IG+
Sbjct: 264 IANKQFTAVKNDYEMTFNNETSVMPC-EDDRHLPTVQFDFTGIDDLESKSKDSLVDIIGI 322
Query: 360 V-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCND-DGLRLQHMCDSGVF 417
SY T +R N E KR ++L D SG+ V TLWG + DG R
Sbjct: 323 CKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQ--------- 373
Query: 418 PILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISR-DSL 476
P+LA+K RVSDF G+ + +S++ + + PD PEA++L+ WF+ EG+ VSIS S
Sbjct: 374 PVLAIKGARVSDFGGRSLSVLSSSTIIVNPDIPEAYKLRGWFDAEGQALDGVSISDLKSG 433
Query: 477 SVGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKK 535
VG + KT+ ++K E LG +KPD+ + AT+VY++ +N Y ACP + CNKK
Sbjct: 434 GVGGGNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPT----QDCNKK 489
Query: 536 VMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYS 595
V++ +G + C++CD YR IL I D WVT FQE AE I+G +A L
Sbjct: 490 VIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGE 549
Query: 596 LKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
LK D+N++ F EV +NA F ++F+++VK ET++DE R+K+TV+ + +Y R ++
Sbjct: 550 LK--DKNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLV 607
>gi|115496244|ref|NP_001068644.1| replication protein A 70 kDa DNA-binding subunit [Bos taurus]
gi|111308484|gb|AAI19987.1| Replication protein A1, 70kDa [Bos taurus]
gi|296476839|tpg|DAA18954.1| TPA: replication protein A1 [Bos taurus]
Length = 616
Score = 354 bits (908), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 223/665 (33%), Positives = 345/665 (51%), Gaps = 91/665 (13%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQV++++ + + + R+R+++SDG + MLATQ N LV L +
Sbjct: 23 PILQVINIRPITTG------NSPPRYRLLMSDGLNTLSSFMLATQLNPLVEEERLSSNCI 76
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
++ +F N +++ R +VI+M+L+V+ S E GS GNP
Sbjct: 77 CQINRFIVNTLKDGRRVVILMELEVL----------------KSAEAVGSKIGNPVPYNE 120
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
G H V P + P +R N P G S S +F
Sbjct: 121 G-----HGQQPVVPPPVSATSPPTSRPQQQNGSP-----------GMASTASKAFG---- 160
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPS------RIIPIAALNPYMGKWT 233
+ + G G S+V S +++PIA+L PY KWT
Sbjct: 161 --------------------ASKTFGKAG--GTSQVNSSGGTQAKVVPIASLTPYQSKWT 198
Query: 234 IKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLV 293
I ARVT K ++R ++N RG+GK+F +L+D + GEIR T FN AD+F+ ++ K+Y
Sbjct: 199 ICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNEQADKFFPLIDVNKVYYF 257
Query: 294 SRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSV 353
S+G+LK A K F + ND E+ + + V C ED +P QF F I D+E +S+
Sbjct: 258 SKGTLKIANKQFTAVKNDYEMTFNNETSVMPC-EDGHHLPTVQFDFTGIGDLESKSKDSL 316
Query: 354 VDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMC 412
VD+IG+ +Y T +++ N E KR ++L DMSG+ V TLWG DD +
Sbjct: 317 VDIIGICKNYEDVTKIIVKSNNREVSKRNIYLMDMSGKVVNATLWG----DDADKF---- 368
Query: 413 DSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSIS 472
D P++A+K RVSDF G+ + +S++ + + PD PEA++L+ WF+ EG+ +SIS
Sbjct: 369 DGSRQPVMAIKGARVSDFGGRSLSVLSSSTIIVNPDIPEAYKLRGWFDSEGQALDGISIS 428
Query: 473 --RDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDR 530
+ + G KT+ ++K E LG +KPD+ + AT+VY++ +N Y ACP +
Sbjct: 429 DLKSGGAGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPT----Q 484
Query: 531 PCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSA 590
CNKKV++ +G + C++CD YR IL I D WVT FQE AE I+G S
Sbjct: 485 DCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQST 544
Query: 591 KDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSE 650
L LK ++N++ F EV +NA F + F+++VK ET++DE R+K+TVV + +Y
Sbjct: 545 AYLGELK--EKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVVDVKPVDYREY 602
Query: 651 TRFIL 655
R ++
Sbjct: 603 GRRLV 607
>gi|348567597|ref|XP_003469585.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Cavia porcellus]
Length = 603
Score = 353 bits (907), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 226/661 (34%), Positives = 350/661 (52%), Gaps = 83/661 (12%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQV+ ++ + + + R+R+++SDG + MLATQ N LV L +
Sbjct: 10 PILQVISIRPITTG------NNPPRYRLLMSDGINTLSSFMLATQMNSLVEQEQLAANCI 63
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
++ +F N +++ R +VI+M+L V+ D +G + P + Q G PQ+ +
Sbjct: 64 CQIDRFIVNTLKDGRRVVILMELKVL-KSADMVGVKIGNPLPYNEGQ-----GQPQAVPS 117
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
V T S L G + VGS++P Y GA S +F P
Sbjct: 118 PV-------TASSPLTGRPQQQNGSSGVGSSVPKAY-----GA--------SKTFGKP-- 155
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSE-VPSRIIPIAALNPYMGKWTIKARV 238
GL+ S S+++PI +L PY KWTI+ARV
Sbjct: 156 -------------------------GGSGLLHPSGGTQSKVVPIVSLTPYQSKWTIRARV 190
Query: 239 TAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSL 298
T K ++R ++N RG+GK+F +L+D + GEIR FN D+F+ +E K+Y S+GSL
Sbjct: 191 TNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRAAAFNEQVDKFFPLIEVNKVYYFSKGSL 249
Query: 299 KPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIG 358
K A K F+ + ND E+ + + V C EDD +P QF F I+D+E +S+VD+IG
Sbjct: 250 KIANKQFSAVKNDYEMTFNSETSVVPC-EDDHHLPTVQFDFTGIDDLENKSKDSLVDIIG 308
Query: 359 VV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCND-DGLRLQHMCDSGV 416
+ SY T ++ N E KR ++L D SG+ V TLWG + DG R
Sbjct: 309 ICKSYEDATKITVKSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQ-------- 360
Query: 417 FPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISR-DS 475
P++A+K RVSDF G+ + +S++ + + PD PEA++L+ WF+ EG+ VSIS
Sbjct: 361 -PVIAIKGARVSDFGGRSLSVLSSSTIIMNPDIPEAYKLRGWFDTEGQTLDGVSISDLKG 419
Query: 476 LSVGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNK 534
++G ++ KT+ ++K E LG +K D+ + AT+VY++ +N Y ACP + CNK
Sbjct: 420 GALGTSNTNWKTLYEVKSENLGQGDKADYFSSVATVVYLRKENCMYQACPT----QECNK 475
Query: 535 KVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLY 594
KV++ +G + C++CD+ YR IL I D WVT FQE AE I+G + L
Sbjct: 476 KVIDQQNGLYRCEKCDREFPNFKYRMILSANIADFQENQWVTCFQESAEAILGQNTAYLG 535
Query: 595 SLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFI 654
LK D+N++ F EV +NA F + FK++VK ET++DE RVK+TV+ + +Y R +
Sbjct: 536 ELK--DKNEQAFEEVFQNANFRSFTFKIRVKLETYNDESRVKATVMDVKPVDYRDYGRRL 593
Query: 655 L 655
+
Sbjct: 594 I 594
>gi|402898208|ref|XP_003912118.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit [Papio
anubis]
Length = 616
Score = 353 bits (906), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 227/660 (34%), Positives = 345/660 (52%), Gaps = 81/660 (12%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQV++++ + + + R+R+++SDG + MLATQ N LV L V
Sbjct: 23 PILQVINIRPITTG------NSPPRYRLLMSDGLNTLSSFMLATQLNPLVEQERLSSNCV 76
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
++ +F N +++ R +VI+M+L+V+ S E G GNP
Sbjct: 77 CQIHRFIVNTLKDGRRVVILMELEVL----------------KSAEAVGVKIGNPVPYNE 120
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
G Q S + P +H S G+GS +++ S
Sbjct: 121 GHG-QPQAAPPASAGSPAASSKPQQQHGSS-------------GAGSTVSKAYGASKTFG 166
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVT 239
+ P SN + Q S+++PIA+L PY KWTI ARVT
Sbjct: 167 KAGGPSLSNTSGGTQ----------------------SKVVPIASLTPYQSKWTICARVT 204
Query: 240 AKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLK 299
K ++R ++N RG+GK+F +L+D + GEIR T FN D+F+ +E K+Y S+G+LK
Sbjct: 205 NKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLK 263
Query: 300 PAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGV 359
A K F + ND E+ + + V C EDD +P QF F I+D+E +S+VD+IG+
Sbjct: 264 IANKQFTAVKNDYEMTFNNETSVMPC-EDDRHLPTVQFDFTGIDDLESKSKDSLVDIIGI 322
Query: 360 V-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCND-DGLRLQHMCDSGVF 417
SY T +R N E KR ++L D SG+ V TLWG + DG R
Sbjct: 323 CKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQ--------- 373
Query: 418 PILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISR-DSL 476
P+LA+K RVSDF G+ + +S++ + PD PEA++L+ WF+ EG+ VSIS S
Sbjct: 374 PVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALDGVSISDLKSG 433
Query: 477 SVGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKK 535
VG + KT+ ++K E LG +KPD+ + AT+VY++ +N Y ACP + CNKK
Sbjct: 434 GVGGGNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPT----QDCNKK 489
Query: 536 VMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYS 595
V++ +G + C++CD YR IL I D WVT FQE AE I+G +A L
Sbjct: 490 VIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGE 549
Query: 596 LKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
LK D+N++ F EV +NA F ++F+++VK ET++DE R+K+TV+ + +Y R ++
Sbjct: 550 LK--DKNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLV 607
>gi|387539408|gb|AFJ70331.1| replication protein A 70 kDa DNA-binding subunit [Macaca mulatta]
Length = 616
Score = 353 bits (905), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 226/660 (34%), Positives = 345/660 (52%), Gaps = 81/660 (12%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQV++++ + + + R+R+++SDG + MLATQ N LV L +
Sbjct: 23 PILQVINIRPITTG------NSPPRYRLLMSDGLNTLSSFMLATQLNPLVEQERLSSNCI 76
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
++ +F N +++ R +VI+M+L+V+ S E G GNP
Sbjct: 77 CQIHRFIVNTLKDGRRVVILMELEVL----------------KSAEAVGVKIGNPVPYNE 120
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
G Q S + P +H S G+GS +++ S
Sbjct: 121 GHG-QPQAAPPASAGSPAASSKPQQQHGSS-------------GAGSTVSKAYGASKTFG 166
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVT 239
+ P SN + Q S+++PIA+L PY KWTI ARVT
Sbjct: 167 KAGGPSLSNTSGGTQ----------------------SKVVPIASLTPYQSKWTICARVT 204
Query: 240 AKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLK 299
K ++R ++N RG+GK+F +L+D + GEIR T FN D+F+ +E K+Y S+G+LK
Sbjct: 205 NKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLK 263
Query: 300 PAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGV 359
A K F + ND E+ + + V C EDD +P QF F I+D+E +S+VD+IG+
Sbjct: 264 IANKQFTAVKNDYEMTFNNETSVMPC-EDDRHLPTVQFDFTGIDDLESKSKDSLVDIIGI 322
Query: 360 V-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCND-DGLRLQHMCDSGVF 417
SY T +R N E KR ++L D SG+ V TLWG + DG R
Sbjct: 323 CKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQ--------- 373
Query: 418 PILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISR-DSL 476
P+LA+K RVSDF G+ + +S++ + PD PEA++L+ WF+ EG+ VSIS S
Sbjct: 374 PVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALDGVSISDLKSG 433
Query: 477 SVGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKK 535
VG + KT+ ++K E LG +KPD+ + AT+VY++ +N Y ACP + CNKK
Sbjct: 434 GVGGGNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPT----QDCNKK 489
Query: 536 VMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYS 595
V++ +G + C++CD YR IL I D WVT FQE AE I+G +A L
Sbjct: 490 VIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGE 549
Query: 596 LKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
LK D+N++ F EV +NA F ++F+++VK ET++DE R+K+TV+ + +Y R ++
Sbjct: 550 LK--DKNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLV 607
>gi|392580530|gb|EIW73657.1| hypothetical protein TREMEDRAFT_67478 [Tremella mesenterica DSM
1558]
Length = 596
Score = 352 bits (903), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 214/646 (33%), Positives = 333/646 (51%), Gaps = 109/646 (16%)
Query: 26 RFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNRMIVIVMDLDVI 85
R+R++LSDG+ QGMLATQ N +V S L +V++L F NV+Q R ++I++ L+V+
Sbjct: 48 RYRVILSDGTHFLQGMLATQLNPMVDSKELDKNTVIKLKTFVTNVVQGRKLIIILTLEVV 107
Query: 86 IDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPAAR 145
P S E+ GNP T V Q A P A
Sbjct: 108 ---------------PWSGEK----IGNP--------------TNVEQ------AAPLA- 127
Query: 146 HVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYA 205
P + KP A + S+P A +T AP
Sbjct: 128 -----APQSVLKPSTTANVNA---------------SKPVAKQPQKTAAAPM-------- 159
Query: 206 NRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSD 265
+ PI L+PY KWTIKARVT K +L+H++NQRG+GK+F +D D
Sbjct: 160 -----------GPLYPIEGLSPYQNKWTIKARVTQKSDLKHWSNQRGEGKLFSVTFMD-D 207
Query: 266 GGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLC 325
GEIR T FN DQFY ++ GK+Y VSR + A+K FN+++N+ EI + ++ +Q C
Sbjct: 208 TGEIRATGFNETVDQFYDLLQEGKVYFVSRARINIAKKQFNNVNNEYEITFENSTEIQPC 267
Query: 326 YEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTET-QKRTLHL 384
DD S+P+ +++F+ + D+ ++ + + D+IGVV + S+ K + KR + L
Sbjct: 268 --DDESVPQIKYNFKSVGDLGDLQKDELCDVIGVVKEVGELGSVTSKATNKPFAKRDIQL 325
Query: 385 RDMSGRSVELTLWG----NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTIST 440
D SG+SV LTLWG F DD P++A K +V DF G+ + S+
Sbjct: 326 VDQSGQSVRLTLWGKQAETFQADDE------------PVIAFKGVKVGDFGGRSLSMFSS 373
Query: 441 TQLFIEPDFPEAHRLKEWFEKEGKNTQ-----SVSISRDSLSVGRADIRKTVSQIKDEGL 495
+ + PD PEAH L+ W++ EG++ S ++S + + KT+ Q KDE L
Sbjct: 374 ATMALNPDIPEAHSLRGWYDAEGRSKHFQAYTSATVSNSDGQITKPSEIKTIGQAKDEQL 433
Query: 496 GTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVE 555
G +K D+ T AT+ +IK + F Y AC G CNKKV + G G W C++CD++
Sbjct: 434 GMSDKTDYFTTQATVSFIKSETFSYPACANPDG---CNKKVTDEGSG-WRCEKCDKTWPS 489
Query: 556 CDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATF 615
+RYIL + D+ G W+TAF E AE+IMG+SA +L ++ + ND +F + A+
Sbjct: 490 PIHRYILSMNVMDYAGSFWITAFNEVAEQIMGISANELMEMRD-NGNDVEFQRSFQKASG 548
Query: 616 TKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
Y F++ K+++F+D+ RV+ +A +Y +++ ++ L++ +
Sbjct: 549 RTYNFQMMAKQDSFNDQPRVRYQCRRAALPDYPADSAHLVSLINSI 594
>gi|344290276|ref|XP_003416864.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit
[Loxodonta africana]
Length = 603
Score = 352 bits (903), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 223/660 (33%), Positives = 352/660 (53%), Gaps = 81/660 (12%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQV++++ + + + R+R+++SDG + MLATQ N LV L +
Sbjct: 10 PILQVINIRPITTG------NSPPRYRLLMSDGVNTLSSFMLATQLNPLVEEERLSSNCI 63
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
++ +F N +++ R +VI+M+L+V+ S E G GNP
Sbjct: 64 CQINRFIVNTLKDGRRVVILMELEVL----------------KSAEAVGLKIGNPVPYNE 107
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
G H +V P + P ++ N SG S S ++ P+
Sbjct: 108 G-----HGQQQVVPTPASAASPPTSKPQQQN-----------GSSGMGSIVSKAYGAPKT 151
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVT 239
F + ++ T G ++ S+++PIA+L PY KWTI ARVT
Sbjct: 152 -FGKAGGTSLVNT-----------------AGGTQ--SKVVPIASLTPYQSKWTICARVT 191
Query: 240 AKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLK 299
K ++R ++N RG+GK+F +L+D + GEIR T FN AD+F+ +E K+Y S+G+LK
Sbjct: 192 NKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNEQADKFFPLIEVNKVYYFSKGTLK 250
Query: 300 PAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGV 359
A K F + ND E+ + + V C ED +P QF F I+D+E +S+VD+IGV
Sbjct: 251 IANKQFTAVKNDYEMTFNNETSVMPC-EDGHHLPTMQFDFTGIDDLENKSKDSLVDIIGV 309
Query: 360 V-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCND-DGLRLQHMCDSGVF 417
SY T +++ N E KR ++L DMSG+ V TLWG + DG R
Sbjct: 310 CKSYEDATKIVVKSNNREVSKRNIYLMDMSGKVVSATLWGEDADKFDGTRQ--------- 360
Query: 418 PILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISR-DSL 476
P++A+K RVSDF G+ + +S++ + + PD PEA++L+ WF+ EG+ VSIS S
Sbjct: 361 PVMAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYKLRGWFDSEGQALDGVSISDLKSG 420
Query: 477 SVGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKK 535
+G ++ KT+ ++K E LG +K D+ + AT+VY++ +N Y ACP + CNKK
Sbjct: 421 GIGGSNTNWKTLYEVKSENLGQGDKADYFSCVATVVYLRKENCMYQACPT----QDCNKK 476
Query: 536 VMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYS 595
V++ +G + C++CD YR IL I D WVT FQE AE I+G SA L
Sbjct: 477 VIDQQNGLYRCEKCDSEFPNFKYRMILAANIADFLENQWVTCFQESAEAILGQSAAYLGE 536
Query: 596 LKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
LK ++N++ F EV +NA+F + F++++K ET++DE R+K++VV + +Y R ++
Sbjct: 537 LK--EKNEQAFEEVFQNASFRSFTFRIRIKLETYNDESRIKASVVDVKPVDYREYGRRLI 594
>gi|334324842|ref|XP_001371635.2| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Monodelphis domestica]
Length = 868
Score = 352 bits (902), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 228/663 (34%), Positives = 349/663 (52%), Gaps = 83/663 (12%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQV++++ + + + R+RM++SDG + MLATQ N LV L +
Sbjct: 148 PILQVINIRPIATG------NSPPRYRMLMSDGLNTVSSFMLATQLNVLVEEERLSSNCI 201
Query: 61 VRLTKFTCNVIQ-NRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
++ +F N ++ R +VI+MDL+V+ S ++ G GNP
Sbjct: 202 CQVNRFIVNTLKFGRKVVILMDLEVL----------------QSADEVGGKIGNPVPYNE 245
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGS-GSFSNQSASFSNPR 178
G G A PA + P KP+ GS G S + SF +
Sbjct: 246 G--------------QGQQQAAPAPSPATN---PVATKPQQQNGSSGLGSTATKSFGGSK 288
Query: 179 PEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARV 238
F + +N + TP G S++ +++PIA+LNPY KWTI ARV
Sbjct: 289 -TFGKVGNANLS-TP-----------------GGSQL--KVVPIASLNPYQSKWTICARV 327
Query: 239 TAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSL 298
T K ++R ++N RG+GK+F +++D + GEIR T FN D+F+ ++ K+Y S+G+L
Sbjct: 328 TNKSQIRTWSNSRGEGKLFSIEMVD-ESGEIRATAFNDQVDKFFPLIDVNKVYYFSKGTL 386
Query: 299 KPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIG 358
K A K F + ND E+ + + V LC ED +P QF F I D+E +S+VD+IG
Sbjct: 387 KIANKQFTAVKNDYEMTFNNETSVVLC-EDAHHLPTVQFDFTVIGDLENKAKDSLVDIIG 445
Query: 359 VV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVF 417
V SY + +++ + E KR +HL D SG+ V TLWG +D R D
Sbjct: 446 VCKSYEDASKVVVKSSNREVSKRNVHLMDTSGKVVTTTLWG----EDADRF----DGSRQ 497
Query: 418 PILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSIS--RDS 475
P+LA+K RVSDF G+ + +S++ + + PD PEA +L+ WF+ EG+ + VSIS R
Sbjct: 498 PVLAIKGARVSDFGGRSLSVLSSSTILVNPDIPEAFKLRGWFDSEGQALEVVSISDARGG 557
Query: 476 LSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKK 535
G KT+ + K E LG +K D+ + T+VY++ +N Y ACP + CNKK
Sbjct: 558 GMGGSNTNWKTLYEAKSENLGQGDKADYFSCVGTVVYLRKENCMYQACP----SQDCNKK 613
Query: 536 VMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYS 595
V++ +G + C++CD+ YR IL I D WVT FQE AE I+G + L
Sbjct: 614 VIDQQNGLYRCEKCDREFPSFKYRMILSVNIADFQENQWVTCFQESAEAILGQNTAYLGE 673
Query: 596 LKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSE-TRFI 654
LK D+N++ F EV +NA F Y FK++VK ET++DE R+K++V+ + +Y R I
Sbjct: 674 LK--DKNEQAFEEVFQNANFRSYTFKIRVKLETYNDESRIKASVLDVKPVDYREYGKRLI 731
Query: 655 LDL 657
+++
Sbjct: 732 MNI 734
>gi|167621451|ref|NP_956105.2| replication protein A 70 kDa DNA-binding subunit [Danio rerio]
gi|82185887|sp|Q6NY74.1|RFA1_DANRE RecName: Full=Replication protein A 70 kDa DNA-binding subunit;
Short=RP-A p70; AltName: Full=Replication factor A
protein 1; Short=RF-A protein 1
gi|44890707|gb|AAH66711.1| Rpa1 protein [Danio rerio]
gi|49619041|gb|AAT68105.1| replication protein A 70kd subunit [Danio rerio]
Length = 601
Score = 351 bits (901), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 218/664 (32%), Positives = 357/664 (53%), Gaps = 91/664 (13%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQ ++++ + + RFR+++SDG + ML+TQ N + L V
Sbjct: 22 PILQCVNIRKI------DGGNGVSRFRVMMSDGLHTMSSFMLSTQLNPMAEQNQLATNCV 75
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
L + NV+++ R +V+++D++V+ S+++ PG + G+P
Sbjct: 76 CVLKRSVTNVLKDGRRVVVILDIEVL---------------KSADQMPGKI-GDPTPYVE 119
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
G S + P T P AR + +P+ G+ ++
Sbjct: 120 GQS----------KAPS-TAPAPTARPL---------QPQNGSDGSTY------------ 147
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVT 239
RP A ++ + P M +P+ S+++PIA+LNPY KWTI+ARVT
Sbjct: 148 ---RPSAQSFGKKP----MAAPNTPGG---------SSKVVPIASLNPYQSKWTIRARVT 191
Query: 240 AKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLK 299
K +R ++N RGDGK+F +L+D + GEIR T FN D+F+ +E GK++ +S+G+LK
Sbjct: 192 NKSAIRTWSNSRGDGKLFSMELVD-ESGEIRATGFNNEVDKFFSLIEQGKVFYISKGTLK 250
Query: 300 PAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGV 359
A K F+ L ND E+ L+ + + C ED +P Q F I D+E E ++++D+IGV
Sbjct: 251 IANKQFSSLKNDYEMTLNGETSIIPC-EDSNDVPMLQCDFVSIADLESREKDTILDVIGV 309
Query: 360 VSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPI 419
A +M KN E KR + L DMSGR ++LT+WG+ D PI
Sbjct: 310 CKNAEDVARIMTKNSREVSKRNIQLIDMSGRVIQLTMWGSDA--------ETFDGSGQPI 361
Query: 420 LAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGK--NTQSVSISRDSLS 477
LA+K R+SDF G+ + T+ ++ + I PD PEA++L+ W++KEG + QS++ R
Sbjct: 362 LAIKGARLSDFGGRSLSTLYSSTVMINPDIPEAYKLRGWYDKEGHALDGQSMTELRGPGG 421
Query: 478 VGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVM 537
G + KT++++K+E LG +K D+ + ATIVYI+ +N Y ACP + CNKKV+
Sbjct: 422 GGNTNW-KTLAEVKNEHLGHGDKADYFSCIATIVYIRKENCLYQACP----SKDCNKKVV 476
Query: 538 NNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLK 597
+ +G + C++CD+ + YR +L I D WVT FQ+ AE ++G ++ L LK
Sbjct: 477 DQQNGMFRCEKCDKEFPDFKYRLMLSANIADFGDNQWVTCFQDTAETLLGQNSSYLGQLK 536
Query: 598 YVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDL 657
D N+ F EV ++A F ++F+ +VK ET++DE R+K TVV A+ ++ ++ ++
Sbjct: 537 --DTNEAAFDEVFQHANFNTFVFRNRVKLETYNDESRIKVTVVDAKPVDHREYSKRLIIN 594
Query: 658 MDKL 661
+ KL
Sbjct: 595 IRKL 598
>gi|355568066|gb|EHH24347.1| Replication protein A 70 kDa DNA-binding subunit, partial [Macaca
mulatta]
Length = 605
Score = 351 bits (900), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 222/662 (33%), Positives = 346/662 (52%), Gaps = 85/662 (12%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQV++++ + + + R+R+++SDG + MLATQ N LV L +
Sbjct: 12 PILQVINIRPITTG------NSPPRYRLLMSDGLNTLSSFMLATQLNPLVEQERLSSNCI 65
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
++ +F N +++ R +VI+M+L+ ++ + +G + P + G PQ+
Sbjct: 66 CQIHRFIVNTLKDGRRVVILMELE-VLKSAEVVGVKIGNPVPYNEGH-----GQPQAAPP 119
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEV--GAGSGSFSNQSASFSNP 177
+ +++ Q G + A GS + Y + AG S SN S
Sbjct: 120 ASAGSPAASSKPQQQHGSSGA-------GSTVSKAYGASKTFGKAGGPSLSNTSGG---- 168
Query: 178 RPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKAR 237
S+++PIA+L PY KWTI AR
Sbjct: 169 -------------------------------------TQSKVVPIASLTPYQSKWTICAR 191
Query: 238 VTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGS 297
VT K ++R ++N RG+GK+F +L+D + GEIR T FN D+F+ +E K+Y S+G+
Sbjct: 192 VTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGT 250
Query: 298 LKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLI 357
LK A K F + ND E+ + + V C EDD +P QF F I+D+E +S+VD+I
Sbjct: 251 LKIANKQFTAVKNDFEMTFNNETSVMPC-EDDRHLPTVQFDFTGIDDLESKSKDSLVDII 309
Query: 358 GVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCND-DGLRLQHMCDSG 415
G+ SY T +R N E KR ++L D SG+ V TLWG + DG R
Sbjct: 310 GICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQ------- 362
Query: 416 VFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISR-D 474
P+LA+K RVSDF G+ + +S++ + PD PEA++L+ WF+ EG+ VSIS
Sbjct: 363 --PVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALDGVSISDLK 420
Query: 475 SLSVGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCN 533
S VG + KT+ ++K E LG +KPD+ + AT+VY++ +N Y ACP + CN
Sbjct: 421 SGGVGGGNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPT----QDCN 476
Query: 534 KKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDL 593
KKV++ +G + C++CD YR IL I D WVT FQE AE I+G +A L
Sbjct: 477 KKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYL 536
Query: 594 YSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRF 653
LK D+N++ F EV +NA F ++F+++VK ET++DE R+K+TV+ + +Y R
Sbjct: 537 GELK--DKNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRR 594
Query: 654 IL 655
++
Sbjct: 595 LV 596
>gi|359320313|ref|XP_003639310.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Canis lupus familiaris]
Length = 616
Score = 351 bits (900), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 217/659 (32%), Positives = 348/659 (52%), Gaps = 79/659 (11%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQV++++ + + + R+R+++SDG + MLATQ N LV L +
Sbjct: 23 PILQVINIRPITTG------NSPPRYRLLMSDGLNTLSSFMLATQLNPLVEEEQLSSNCI 76
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
++ +F N +++ R +VI+M+L+++ S E G GNP
Sbjct: 77 CQINRFIVNTLKDGRRVVILMELNIL----------------KSAEAVGLKIGNPVPYNE 120
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
G G AVP+ +N P N KP+ GS + ++ +
Sbjct: 121 G--------------HGQQQAVPSPVS-AANPPAN--KPQQQNGSSAMGFTASKTYSASK 163
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVT 239
F +P ++ A + G ++V +++PIA+L PY KWTI ARVT
Sbjct: 164 TFGKPGGTSLASSS-----------------GGTQV--KVVPIASLTPYQSKWTICARVT 204
Query: 240 AKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLK 299
K ++R ++N RG+GK+F +L+D + GEIR T FN D+F+ ++ K+Y +S+G LK
Sbjct: 205 NKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNEQVDKFFPLIDMNKVYYISKGILK 263
Query: 300 PAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGV 359
A K F + ND E+ + + V C ED +P QF F I D+E +S++D+IG+
Sbjct: 264 IANKQFTAVKNDYEMTFNNETSVMPC-EDGHHLPTVQFDFTGIGDLESKTKDSLIDIIGI 322
Query: 360 V-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFP 418
SY T ++ N E KR ++L DMSG+ V TLWG +D R D P
Sbjct: 323 CKSYEEATKITVKSNNREVSKRNIYLMDMSGKVVTATLWG----EDADRF----DGSRQP 374
Query: 419 ILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSIS--RDSL 476
++A+K RVSDF G+ + +S++ + + PD PEA++L+ WF+ EG+ +SIS +
Sbjct: 375 VMAIKGARVSDFGGRSLSVLSSSTIIVNPDIPEAYKLRGWFDSEGQALDGISISDLKSGG 434
Query: 477 SVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKV 536
+ G KT+ ++K E LG +K D+ + AT+VY++ +N Y ACP + CNKKV
Sbjct: 435 TGGGNTNWKTLYEVKSENLGHGDKADYFSSVATVVYLRKENCMYQACPT----QDCNKKV 490
Query: 537 MNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSL 596
++ +G + C++CD YR IL I D WVT FQE AE I+G + L L
Sbjct: 491 IDQQNGLYRCEKCDSEFPSFKYRMILSVNIADFQENQWVTCFQESAEAIIGQNTAYLGEL 550
Query: 597 KYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
K ++N++ F EV +NA F + F+++VK ET++DE R+K+TV+ + +Y R ++
Sbjct: 551 K--EKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVMDVKPVDYREYGRRLI 607
>gi|57525314|ref|NP_001006221.1| replication protein A 70 kDa DNA-binding subunit [Gallus gallus]
gi|75571284|sp|Q5ZJJ2.1|RFA1_CHICK RecName: Full=Replication protein A 70 kDa DNA-binding subunit;
Short=RP-A p70; AltName: Full=Replication factor A
protein 1; Short=RF-A protein 1
gi|53133544|emb|CAG32101.1| hypothetical protein RCJMB04_17l6 [Gallus gallus]
Length = 614
Score = 350 bits (898), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 227/661 (34%), Positives = 349/661 (52%), Gaps = 85/661 (12%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
PVLQV++ + + + + R+R+++SDG + MLATQ N LV L +
Sbjct: 22 PVLQVINTRAIATG------NGPPRYRVLMSDGVNTLSSFMLATQLNPLVEEERLSAHCI 75
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
++ +F N +++ R +VI+MDLDV+ + + G GNP
Sbjct: 76 CQVNRFIVNSLKDGRRVVILMDLDVL----------------KTADMVGGTVGNPVPYNE 119
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSA-SFSNPR 178
G Q + P A N PN KP+ G+ S + +A + P
Sbjct: 120 GQGQQRS-------------SAPTA-----NAAPN--KPQQQDGNLSVAGSAAPKYHAPS 159
Query: 179 PEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARV 238
+FS+ A + +TP S+++PIA+LNPY KWTI ARV
Sbjct: 160 NQFSKASAPSSVKTPGG-------------------TQSKVVPIASLNPYQSKWTICARV 200
Query: 239 TAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSL 298
T KG++R ++N RG+GK+F +L+D + GEIR T FN AD+F+ +E K+Y ++G+L
Sbjct: 201 TQKGQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNDQADKFFPLIELNKVYYFTKGNL 259
Query: 299 KPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIG 358
K A K + + ND EI + + V C +D +P QF F I+D+E +S+VD+IG
Sbjct: 260 KTANKQYTAVKNDYEITFNNETSVVPC-DDAQHLPSVQFDFVSISDLENTPKDSIVDVIG 318
Query: 359 VV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCND-DGLRLQHMCDSGV 416
+ SY T +++ + E KR +HL D SG+ V TLWGN DG R
Sbjct: 319 ICKSYEDVTKIVVKASNREVSKRNVHLMDTSGKLVTATLWGNEAEKFDGSRQ-------- 370
Query: 417 FPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSIS--RD 474
P++A+K RVSDF G+ + +S++ + + PD PEA +L+ WF+ EG+ + SIS R
Sbjct: 371 -PVIAIKGARVSDFGGRSLSVLSSSTVVVNPDSPEAFKLRGWFDSEGQLLECASISDVRG 429
Query: 475 SLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNK 534
+ G KT+ + K E LG +K D+ + TIV+++ +N Y ACP + CNK
Sbjct: 430 GSASGVNTNWKTLYEAKSERLGQGDKADYFSCVGTIVHLRKENCMYQACP----SQDCNK 485
Query: 535 KVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLY 594
KV++ +G + C++CD+ YR +L I D WVT FQE AE I+G SA L
Sbjct: 486 KVIDQQNGLYRCEKCDREFPNFKYRMMLLVTIADSLDYQWVTCFQESAEFILGQSATFLG 545
Query: 595 SLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFI 654
LK D+N++ F EV +NA F Y FK++VK ET++DE R+K+T + + NY ++ +
Sbjct: 546 ELK--DKNEQAFEEVFQNANFNTYEFKIRVKLETYNDESRIKATALDVKPVNYREYSKRL 603
Query: 655 L 655
+
Sbjct: 604 I 604
>gi|149637674|ref|XP_001507100.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit
[Ornithorhynchus anatinus]
Length = 619
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 220/654 (33%), Positives = 336/654 (51%), Gaps = 98/654 (14%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQV++++ + + + R+R+++SDG + MLATQ N LV L +
Sbjct: 23 PILQVINIRAISTG------NGPNRYRLLMSDGLNTLSSFMLATQLNSLVEEERLSTNCI 76
Query: 61 VRLTKFTCNVI-QNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
++ +F N + + R ++I+MDL+V+ E+ G GNP
Sbjct: 77 CQINRFIVNSLKEGRKVIILMDLEVL----------------KLAEEVGGKIGNPVPYNE 120
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
G Q + PG T PA+ KP+ GS + P
Sbjct: 121 GAGQQQ-----TTPAPGPTAIPPAS------------KPQQQNGSSGLGSAGTKSYGPAK 163
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVT 239
F++ +SN TP + S+++PIA+L PY KWTI ARVT
Sbjct: 164 SFAKTGSSNLLNTPGGSH-------------------SKVVPIASLTPYQSKWTICARVT 204
Query: 240 AKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLK 299
K ++R ++N RG+GK+F +L+D + GEIR T FN AD+F+ +E K+Y S+GSLK
Sbjct: 205 NKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNDQADKFFPLIEVNKVYYFSKGSLK 263
Query: 300 PAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGV 359
A K F + ND E+ + + V C ED +P QF F I D+E +S+VD+IG+
Sbjct: 264 IANKQFTAVKNDYEMTFNNETSVVPC-EDAHHLPTVQFDFTGIGDLENKSKDSLVDIIGI 322
Query: 360 V-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFP 418
SY ++ N E KR +HL DMSG+ V TLWG DD + D P
Sbjct: 323 CKSYEEANKITVKSNNREVSKRNIHLMDMSGKLVTATLWG----DDAEKF----DGSRQP 374
Query: 419 ILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSV 478
++A+K RVSDF G+ + +S++ + + PD PEA +L+ WF+ EGK +SIS
Sbjct: 375 VMAIKGARVSDFGGRSLSVLSSSTVIMNPDIPEAFKLRGWFDSEGKGLDCISIS------ 428
Query: 479 GRADIR------------KTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIM 526
D+R KT+ ++K E LG +K ++ + T+VY++ +N Y ACP
Sbjct: 429 ---DLRSGGGGGGSSTNWKTLYEVKAENLGHGDKAEYFSCVGTVVYLRKENCMYQACP-- 483
Query: 527 IGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM 586
+ CNKKV++ +G + C++CD YR IL I D WVT FQE AE I+
Sbjct: 484 --SQDCNKKVIDQQNGLYRCEKCDCEFPNFKYRMILSANIADFQENQWVTCFQESAEAIL 541
Query: 587 GMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVV 640
G + L LK ++N++ F EV +NA F Y+F+++VK ET++DE R+K++V+
Sbjct: 542 GQNTMFLGELK--EKNEQAFEEVFQNANFRSYVFRIRVKLETYNDESRIKASVM 593
>gi|326931344|ref|XP_003211792.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Meleagris gallopavo]
Length = 601
Score = 349 bits (896), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 229/662 (34%), Positives = 351/662 (53%), Gaps = 87/662 (13%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
PVLQV++ + + + + R+R+++SDG + MLATQ N LV L +
Sbjct: 9 PVLQVINTRAIATG------NGPPRYRVLMSDGVNTLSSFMLATQLNPLVEEERLSAHCI 62
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
++ +F N +++ R +VI+MDLDV+ + + G GNP
Sbjct: 63 CQVNRFIVNSLKDGRRVVILMDLDVL----------------KTADMVGGTVGNPVPYNE 106
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSA-SFSNPR 178
G Q + P A N PN KP+ G+ S + +A + P
Sbjct: 107 GQGQQRS-------------SAPTA-----NTAPN--KPQQQNGNLSVAGSAAPKYHAPS 146
Query: 179 PEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARV 238
+FS+ A + +TP S+++PIA+LNPY KWTI ARV
Sbjct: 147 NQFSKASAPSSVKTPGG-------------------TQSKVVPIASLNPYQSKWTICARV 187
Query: 239 TAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSL 298
T KG++R ++N RG+GK+F +L+D + GEIR T FN AD+F+ +E K+Y ++G+L
Sbjct: 188 TQKGQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNDQADKFFPLIELNKVYYFTKGNL 246
Query: 299 KPAQKNFNHLHNDLEI-FLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLI 357
K A K + + ND EI F + TS+V +D +P QF F I+D+E +S+VD+I
Sbjct: 247 KTANKQYTAVKNDYEITFTNETSVVPC--DDAQHLPSVQFDFVSISDLENTPKDSIVDVI 304
Query: 358 GVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCND-DGLRLQHMCDSG 415
G+ SY T +++ N E KR +HL D SG+ V TLWGN DG R
Sbjct: 305 GICKSYEDVTKIVVKANNREVSKRNVHLMDTSGKLVTATLWGNEAEKFDGSRQ------- 357
Query: 416 VFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSIS--R 473
P++A+K RVSDF G+ + +S++ + + PD PEA +L+ WF+ EG+ + SIS R
Sbjct: 358 --PVIAIKGARVSDFGGRSLSVMSSSTVVVNPDSPEAFKLRGWFDSEGQLLECASISDVR 415
Query: 474 DSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCN 533
+ G KT+ + K E LG +K D+ + TIV+++ +N Y ACP + CN
Sbjct: 416 GGSASGVNTNWKTLYEAKSERLGQGDKADYFSCVGTIVHLRKENCMYQACP----SQDCN 471
Query: 534 KKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDL 593
KKV++ +G + C++CD+ YR +L I D WVT FQE AE I+G SA L
Sbjct: 472 KKVIDQQNGLYRCEKCDREFPNFKYRMMLLVTIADSLDYQWVTCFQESAEFILGQSATFL 531
Query: 594 YSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRF 653
LK ++N++ F EV +NA F Y FK++VK ET++DE R+K+T + + NY ++
Sbjct: 532 GELK--EKNEQAFEEVFQNANFNTYEFKIRVKLETYNDESRIKATALDVKPVNYREYSKR 589
Query: 654 IL 655
++
Sbjct: 590 LI 591
>gi|224076356|ref|XP_002197483.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit isoform
1 [Taeniopygia guttata]
gi|449479760|ref|XP_004177049.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit isoform
2 [Taeniopygia guttata]
Length = 613
Score = 348 bits (892), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 231/661 (34%), Positives = 352/661 (53%), Gaps = 86/661 (13%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
PVLQV++ + + + R+R+++SDG + MLATQ N LV L +
Sbjct: 22 PVLQVINTRAIATGTGPP------RYRVLMSDGVNTLSSFMLATQLNSLVEEERLSARCI 75
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
++ +F N +++ R +VI+MD+ V+ D +G P+ +P NE G + P N
Sbjct: 76 CQVNRFIVNSLKDGRRVVILMDVTVL-QTADQVGGPIGNPQPY-NEGQGQRSAAPAGNLA 133
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
Q N L G A PAA P Y P SNQ
Sbjct: 134 ASKPQQQN----GNLSG---AGPAA--------PKYHAP---------SNQ--------- 160
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVT 239
F + A + +TP G S++ +++PIA+LNPY KWTI ARVT
Sbjct: 161 -FGKASAPSALKTP-----------------GGSQI--KVVPIASLNPYQSKWTICARVT 200
Query: 240 AKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLK 299
KG++R ++N RG+GK+F +L+D + GEIR T FN AD+F+ +E K+Y ++G+LK
Sbjct: 201 QKGQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNDQADKFFPLIELNKVYYFTKGNLK 259
Query: 300 PAQKNFNHLHNDLEI-FLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIG 358
A K + + ND EI F + TS+V +D +P QF F I+D+E +S+VD+IG
Sbjct: 260 TANKQYTAVKNDYEITFTNETSVVPC--DDAQHLPSVQFDFVSISDLENTPKDSIVDVIG 317
Query: 359 VV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCND-DGLRLQHMCDSGV 416
+ SY T +++ N E KR +HL D SG+ V TLWGN DG R
Sbjct: 318 ICKSYEDVTKIVVKANNREVSKRNVHLMDTSGKLVTATLWGNEAEQFDGSRQ-------- 369
Query: 417 FPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSIS--RD 474
P++A+K RVSDF G+ + +S++ + I PD PEA +L+ WF+ EG+ + SIS R
Sbjct: 370 -PVIAIKGARVSDFGGRSLSVLSSSTVVINPDSPEAFKLRGWFDSEGQLLECASISDVRG 428
Query: 475 SLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNK 534
+ G KT+ + K E LG +K D+ + TIV+++ +N Y ACP + CNK
Sbjct: 429 GPAAGANTNWKTLFEAKAENLGQGDKADYFSCVGTIVHLRKENCMYQACP----SQDCNK 484
Query: 535 KVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLY 594
KV++ +G + C++CD+ YR +L I D WVT FQ+ AE I+G +A L
Sbjct: 485 KVIDQQNGLYRCEKCDREFPNFKYRLMLLVTIADCLEYQWVTCFQDTAEIILGQNAAFLG 544
Query: 595 SLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFI 654
LK ++N++ F EV +NA F Y F+++VK ET++DE R+K+T + + NY ++ +
Sbjct: 545 ELK--EKNEQAFEEVFQNANFNTYEFRIRVKLETYNDESRIKATAMDVKPVNYREYSKRL 602
Query: 655 L 655
+
Sbjct: 603 I 603
>gi|301765316|ref|XP_002918075.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Ailuropoda melanoleuca]
Length = 603
Score = 347 bits (890), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 217/659 (32%), Positives = 346/659 (52%), Gaps = 79/659 (11%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQV++++ +++ + R+R+++SDG + MLATQ N LV L +
Sbjct: 10 PILQVINIRPIITG------NSPPRYRLLMSDGLNTLSSFMLATQLNPLVEEEQLSSNCI 63
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
++ +F N +++ R +VI+M+LD++ S E G GNP
Sbjct: 64 CQINRFIVNTLKDGRRVVILMELDIL----------------KSAEAVGLKIGNPVPYNE 107
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
G H +V P + PA KP+ GS + + ++
Sbjct: 108 G-----HGQQQVVPSPVSAASAPAN------------KPQQQNGSSAMGSTTSKTYGASK 150
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVT 239
F + ++ A + G ++V +++PIA+L PY KWTI ARVT
Sbjct: 151 TFGKAGGTSLANS-----------------AGGTQV--KVVPIASLTPYQSKWTICARVT 191
Query: 240 AKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLK 299
K ++R ++N RG+GK+F +L+D + GEIR T FN D+F+ ++ K+Y +S+G LK
Sbjct: 192 NKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNEQVDKFFPLIDMNKVYYISKGILK 250
Query: 300 PAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGV 359
A K F + ND E+ + + V C ED +P QF F I D+E +S++D+IG+
Sbjct: 251 IANKQFTAVKNDYEMTFNNETSVMPC-EDGHHLPTVQFDFTGIGDLENKPKDSLIDIIGI 309
Query: 360 V-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFP 418
SY T ++ N E KR ++L DMSG+ V TLWG +D R D P
Sbjct: 310 CKSYEDATKITVKSNNREVSKRNIYLMDMSGKVVTATLWG----EDADRF----DGSRQP 361
Query: 419 ILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSIS--RDSL 476
++A+K RVSDF G+ + +S++ + + PD PEA++L+ WF+ EG+ VSIS +
Sbjct: 362 VMAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYKLRGWFDSEGQALDGVSISDLKSGG 421
Query: 477 SVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKV 536
+ G KT+ ++K E LG +K D+ + AT+VY++ +N Y ACP + CNKKV
Sbjct: 422 TGGSNTNWKTLYEVKSENLGHGDKADYFSSVATVVYLRKENCMYQACPT----QDCNKKV 477
Query: 537 MNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSL 596
++ +G + C++CD YR IL I D WVT FQE AE I+G S L L
Sbjct: 478 IDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEAIIGQSTSYLGEL 537
Query: 597 KYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
K D+N++ F E+ +NA F + F+++VK ET++DE R+K+TV+ + +Y R ++
Sbjct: 538 K--DKNEQAFEEIFQNANFRSFTFRIRVKLETYNDESRIKATVMDVKPVDYREYGRRLI 594
>gi|355717104|gb|AES05824.1| replication protein A1, 70kDa [Mustela putorius furo]
Length = 615
Score = 345 bits (886), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 219/660 (33%), Positives = 345/660 (52%), Gaps = 81/660 (12%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQV++++ +++ + R+R+++SDG + MLATQ N LV L +
Sbjct: 23 PILQVINIRPIITG------NSPPRYRLLMSDGLNTLSSFMLATQLNPLVEEERLSSNCI 76
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
++ +F N +++ R +VI+M+LD++ S E G GNP
Sbjct: 77 CQINRFIVNTLKDGRRVVILMELDIL----------------KSAEAVGLKIGNPVPYNE 120
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
G H +V P PA+ KP GS + + ++
Sbjct: 121 G-----HGQQQVVPPPVSAANPPAS------------KPPQQNGSSAMGSTASKTYGASK 163
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVT 239
F + ++ + G ++V +++PIA+L PY KWTI ARVT
Sbjct: 164 TFGKAGGTSLGNSS-----------------GGTQV--KVVPIASLTPYQSKWTICARVT 204
Query: 240 AKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLK 299
K ++R ++N RG+GK+F +L+D + GEIR T FN D+F+ ++ K+Y +S+G LK
Sbjct: 205 NKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNEQVDKFFPLIDMNKVYYISKGILK 263
Query: 300 PAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGV 359
A K F + ND E+ + + V C ED +P QF F I D+E +S++D+IG+
Sbjct: 264 IANKQFTAVKNDYEMTFNNETSVTPC-EDGHHLPTVQFDFTGIGDLENKPKDSLIDIIGI 322
Query: 360 V-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFP 418
SY T ++ N E KR ++L DMSG+ V TLWG +D R D P
Sbjct: 323 CKSYEDATKITVKSNNREVSKRNIYLMDMSGKVVTATLWG----EDADRF----DGSRQP 374
Query: 419 ILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSV 478
++A+K RVSDF G+ + +S++ + + PD PEA++L+ WF+ EG+ +SIS D S
Sbjct: 375 VMAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYKLRGWFDSEGQALDGISIS-DVKSG 433
Query: 479 GRADIR---KTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKK 535
G I KT+ + K E LG +K D+ + ATIVY++ +N Y ACP + CNKK
Sbjct: 434 GTGGINTNWKTLYEAKSENLGHGDKADYFSSVATIVYLRKENCIYQACPT----QDCNKK 489
Query: 536 VMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYS 595
V++ +G + C++CD YR IL I D WVT FQE AE I+G S L
Sbjct: 490 VIDQQNGLYRCEKCDSEFPSFKYRMILSVNIADFQENQWVTCFQESAEAIIGQSTAHLGE 549
Query: 596 LKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
LK ++N++ F EV +NA F ++F+++VK ET++DE R+K+TV+ + +Y R ++
Sbjct: 550 LK--EKNEQAFEEVFQNANFRSFIFRIRVKLETYNDESRIKATVIDVKPVDYKEYGRRLI 607
>gi|443719869|gb|ELU09821.1| hypothetical protein CAPTEDRAFT_172916 [Capitella teleta]
Length = 608
Score = 345 bits (885), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 218/646 (33%), Positives = 337/646 (52%), Gaps = 86/646 (13%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQ-GMLATQRNELVTSGLLQIGSV 60
P+LQ +D K + S Q RFR++LSDG S MLATQ N+ VT+G L+ SV
Sbjct: 22 PILQCLDWKKISS------QQGADRFRLLLSDGVCSHSSAMLATQLNDKVTNGELEPNSV 75
Query: 61 VRLTKFTCNVIQ-NRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
++L K+ CN I NR ++I++++ VI + Q GS GNP T
Sbjct: 76 IKLDKYLCNTINGNRRVMILLEITVI----------------AKGAQVGSRLGNP----T 115
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNY-FKPEVGAGSGSFSNQSASFSNPR 178
L +V Q P A+ V +++ N KP+ SF N S+S
Sbjct: 116 PYKLGESKEAKVEQ--------PVAKPVQNSISNNQQNKPQ-----NSFYNNSSS----- 157
Query: 179 PEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARV 238
P + A + G + P R+ PI++LNPY +WTIK RV
Sbjct: 158 ---------------------KPFVAAQPSINGPGDSPVRVHPISSLNPYQNRWTIKVRV 196
Query: 239 TAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSL 298
T+K ++R ++N RG+GK+F +D D GEI+ T F D+FY +E K++ V +G+L
Sbjct: 197 TSKSQIRTWSNSRGEGKLFSMTFMD-DSGEIKATAFKDQVDKFYDMIEMNKVFFVKKGTL 255
Query: 299 KPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIG 358
K A K +N ND E+ + + + C +DD S+P F+F I +++ +E NS VD++G
Sbjct: 256 KTADKRYNTTDNDYEMTFNNDTEIIPC-DDDTSLPTINFNFVEIGNLQSVEPNSNVDVLG 314
Query: 359 VVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVF 417
VV ++ +++ K E +KR L L D V LTLW GL ++ +S
Sbjct: 315 VVKSVAEVSTITTKQTNKELKKRELELVDRGQVLVRLTLW-------GLEAENF-NSMNN 366
Query: 418 PILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLS 477
P++A K RVSDF G+ + S++QL + PD P+AH+L+ W++ EG+N + S ++
Sbjct: 367 PVVAAKNVRVSDFGGRSLSCGSSSQLVLNPDIPQAHQLRGWYDSEGRNADFNAYSSEAAG 426
Query: 478 VGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKV 536
G K+ +K + LGT EK D+ T TIVY++ +N Y ACP CNKKV
Sbjct: 427 SGSHSTNWKSFGDVKSQNLGTGEKGDYFTAKGTIVYLRKENCMYMACP----QADCNKKV 482
Query: 537 MNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSL 596
++ +G + C++C + +R IL + D + WVT FQE AE ++G+SA +L L
Sbjct: 483 VDQANGYYRCEKCQKEFPNFKWRMILSANVADFSDNQWVTCFQESAENVLGISADELGKL 542
Query: 597 KYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKA 642
+ +N+ F +V + F Y+ L+ K ET+++E R+K +KA
Sbjct: 543 R--SENEAAFDKVFDESVFKSYVMTLRAKMETYNEETRLKVICLKA 586
>gi|410980231|ref|XP_003996481.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit [Felis
catus]
Length = 701
Score = 345 bits (884), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 216/662 (32%), Positives = 345/662 (52%), Gaps = 79/662 (11%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
PVLQV++++ + + + R+R+++SDG + MLATQ N LV L +
Sbjct: 10 PVLQVINIRPITTG------NSPPRYRLLMSDGLNTLSSFMLATQLNHLVEGEQLSSNCI 63
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
++ +F N +++ R ++I+M+LD++ S E G GNP
Sbjct: 64 CQINRFIVNTLKDGRRVIILMELDIL----------------KSAEAVGLKIGNPVPYNE 107
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
G H +V P PA+ KP+ GS + ++
Sbjct: 108 G-----HGQQQVVPSPASAANPPAS------------KPQQQNGSSGMGSTASKTYGASK 150
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVT 239
F + A+N A +G +++PIA+L PY KWTI ARVT
Sbjct: 151 TFGKAGATNLAN------------------IGSGGTQVKVVPIASLTPYQSKWTICARVT 192
Query: 240 AKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLK 299
K ++R ++N RG+GK+F +L+D + GEIR T FN D+F+ ++ K+Y +S+G+LK
Sbjct: 193 NKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNEQVDKFFPLIDMNKVYYISKGTLK 251
Query: 300 PAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGV 359
A K F + ND E+ + + V C ED +P QF F I D+E +S++D+IG+
Sbjct: 252 IANKQFTAVKNDYEMTFNNETSVVPC-EDGHHLPTVQFDFTAIGDLENKSKDSLIDIIGI 310
Query: 360 V-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFP 418
SY T ++ N E KR ++L DMSG+ V TLWG +D R D P
Sbjct: 311 CKSYEDATKITVKSNNREVSKRDIYLMDMSGKVVTATLWG----EDADRF----DGSRQP 362
Query: 419 ILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSIS--RDSL 476
++A+K RVSDF G+ + +S++ + + PD PEA++L+ WF+ EG+ VSIS +
Sbjct: 363 VMAIKGARVSDFGGRSLSVLSSSTVIMNPDIPEAYKLRGWFDSEGQALDGVSISDLKSGG 422
Query: 477 SVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKV 536
+ G KT+ ++K E LG +K D+ + AT+V+++ +N Y ACP + C KKV
Sbjct: 423 TGGSNTNWKTLYEVKSENLGHGDKADYFSCVATVVFLRKENCMYQACPA----QDCFKKV 478
Query: 537 MNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSL 596
++ +G + C++CD YR IL I D WVT FQE AE I+G + + L
Sbjct: 479 IDQQNGLYRCEKCDSEFPSFKYRMILSANIADFQENQWVTCFQESAEAIIGQTTAYIGEL 538
Query: 597 KYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSE-TRFIL 655
K ++N++ F EV +NA F ++FK++VK ET++DE R+K+TV+ + +Y R I+
Sbjct: 539 K--EKNEQAFEEVFQNANFRTFIFKIRVKLETYNDESRIKATVMDVKPVDYREYGKRLIM 596
Query: 656 DL 657
++
Sbjct: 597 NI 598
>gi|410910178|ref|XP_003968567.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Takifugu rubripes]
Length = 600
Score = 345 bits (884), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 214/642 (33%), Positives = 331/642 (51%), Gaps = 89/642 (13%)
Query: 26 RFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSVVRLTKFTCNVIQN-RMIVIVMDLD 83
RFR+++SDG + ML+TQ N L+ L + + L + N++++ R +VI++++D
Sbjct: 39 RFRVMMSDGRHTLSSFMLSTQLNYLIEENTLSLYCICVLKRHVTNILKDGRRVVIILEID 98
Query: 84 VII---DKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDA 140
VI + IG P P S +P T N S
Sbjct: 99 VIKRAEEVAGRIGDPTPYTE--SQTKPQQTTSNHDSR----------------------- 133
Query: 141 VPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQS 200
PP +P+ R E +R ++ ++ + A +
Sbjct: 134 -----------PP--LQPQ-----------------NRNEMNRGFSKDFGKKGPAAMPST 163
Query: 201 PSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFD 260
P S+++PIA+LNPY KWTI+ARVT K +R ++N RGDGK+F +
Sbjct: 164 PGG------------GSKVVPIASLNPYQSKWTIRARVTNKSSIRTWSNSRGDGKLFTVE 211
Query: 261 LLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTS 320
L+D + GEIR+T FN D+F+ +EAGK+Y +S+ SLK A K + + ND E+ L+ S
Sbjct: 212 LVD-ESGEIRMTAFNQEVDKFFGLIEAGKVYYISKCSLKIANKQYTSVKNDYEMTLNGES 270
Query: 321 MVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKR 380
+ C ED +P Q F I D+E E +S+VD+IGV K+ E KR
Sbjct: 271 SIVPC-EDSCDVPMVQCDFVSIGDLENKEKDSIVDVIGVCKKTDEATHFTSKSNREMSKR 329
Query: 381 TLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTIST 440
TLHL DMSG+ V +TLWG D PI+A+K ++SDF G + +
Sbjct: 330 TLHLIDMSGKLVTVTLWG--------EEAEKFDGSGEPIIAIKGAKLSDFGGCSLSASFS 381
Query: 441 TQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIR-KTVSQIKDEGLGTKE 499
+ L + PD PEAH+L+ W++KEG + + S++ G + KT++ +K E LG E
Sbjct: 382 STLMVNPDIPEAHKLRGWYDKEGHSMEGQSLTEMRSGGGGGNTNWKTLTDVKTEHLGHGE 441
Query: 500 KPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYR 559
K D+ T ATIVY++ +N Y ACP + CNKKV++ +G + C++CD+ YR
Sbjct: 442 KADYYTCIATIVYLRKENCLYQACP----SQDCNKKVVDQQNGMFRCEKCDKEFPNFKYR 497
Query: 560 YILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYL 619
IL I D+ WVT FQE AE I+G +A L LK + N+ F EV + A F ++
Sbjct: 498 LILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLK--ESNEAAFDEVFQQANFNSFI 555
Query: 620 FKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
F+ +VK ET++DE R+K+TV++ + ++ ++ ++ + KL
Sbjct: 556 FRSRVKLETYNDESRIKATVMEVKPVDHKDYSKRLIMNIRKL 597
>gi|395853270|ref|XP_003799138.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit
[Otolemur garnettii]
Length = 616
Score = 342 bits (878), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 220/661 (33%), Positives = 344/661 (52%), Gaps = 83/661 (12%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQV++++ + + + R+R+++SDG + MLATQ N LV L +
Sbjct: 23 PILQVINIRPITTG------NSPPRYRLLMSDGLNTLSSFMLATQLNPLVEQQRLSSNCI 76
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
++ +F N +++ R +VI+M+L+V+ S E G GNP
Sbjct: 77 CQINRFIVNTLKDGRRVVILMELEVL----------------KSAEAVGLKIGNPVPYNE 120
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGS-GSFSNQSASFSNPR 178
G H +V P T + P+ +P+ GS G S S SF +
Sbjct: 121 G-----HGQQQVVPSPATTAS------------PSTSRPQPQNGSLGMGSAVSKSFGASK 163
Query: 179 PEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARV 238
F +P + T ++++PIA+L PY KWTI ARV
Sbjct: 164 -TFGKPGGMSLPNTSGG-------------------TQAKVVPIASLTPYQSKWTICARV 203
Query: 239 TAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSL 298
T K ++R ++N RG+GK+F +L+D GEIR T FN D+F+ +E K+Y ++G+L
Sbjct: 204 TNKSQIRTWSNSRGEGKLFSVELVDQ-SGEIRATAFNDQVDKFFPLIEVNKVYYFTKGTL 262
Query: 299 KPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIG 358
K A K F+ + ND E+ + V C EDD +P QF F I D+E +S+VD+IG
Sbjct: 263 KIANKQFSAVKNDYEMTFSNDTSVMPC-EDDHHLPTVQFDFTGIGDLENKPKDSLVDIIG 321
Query: 359 VV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCND-DGLRLQHMCDSGV 416
V +Y T ++ E KR ++L D SG+ V TLWG + DG R
Sbjct: 322 VCKNYEDATKITVKSTNREVAKRNIYLMDTSGKVVTTTLWGEDADKFDGSRQ-------- 373
Query: 417 FPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISR-DS 475
P++A+K RVSDF G+ + +S++ + + PD PEA++L+ WF+ EG+ VSIS S
Sbjct: 374 -PVMAIKGARVSDFGGRSLSVLSSSTIIVNPDIPEAYKLRGWFDSEGQALDGVSISDLKS 432
Query: 476 LSVGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNK 534
VG ++ KT++++K E LG +K D+ + AT+VY++ +N Y ACP + CNK
Sbjct: 433 GGVGGSNTNWKTLNEVKSENLGQGDKADYFSSVATVVYLRKENSMYQACPT----QDCNK 488
Query: 535 KVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLY 594
KV++ +G + C++CD YR IL I D WVT FQE AE I+G + L
Sbjct: 489 KVIDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQDNQWVTCFQESAEAILGQNTAYLG 548
Query: 595 SLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFI 654
LK ++N++ F EV +NA F + F+++VK E ++DE R+K+TV+ + +Y R +
Sbjct: 549 ELK--EKNEQAFEEVFQNANFRSFTFRIRVKLENYNDESRIKATVMDVKPVDYREYGRRL 606
Query: 655 L 655
+
Sbjct: 607 M 607
>gi|74143871|dbj|BAE41250.1| unnamed protein product [Mus musculus]
gi|74195701|dbj|BAE39655.1| unnamed protein product [Mus musculus]
Length = 621
Score = 342 bits (877), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 223/662 (33%), Positives = 352/662 (53%), Gaps = 78/662 (11%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQV++++ + + ++ R+R+++SDG + MLATQ N LV G L V
Sbjct: 23 PILQVINIRPISTG------NRSPRYRLLMSDGLNTLSSFMLATQLNTLVEGGQLASNCV 76
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
++ KF N +++ R +V++MDL+V+ S E G GNP
Sbjct: 77 CQVHKFIVNTLKDGRKVVVLMDLEVM----------------KSAEDVGLKIGNPVPYNE 120
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGA-GSGSFSNQSASFSNPR 178
G Q + +P PA+ + P + +P+ G+ G GS + ++ S P
Sbjct: 121 GYGQQQQQQQQQQAVPS-----PAS---AATPPASKPQPQNGSLGMGSTAAKAYGASKP- 171
Query: 179 PEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSE-VPSRIIPIAALNPYMGKWTIKAR 237
F +P A GL+ S S+++PIA+L PY KWTI AR
Sbjct: 172 --FGKP--------------------AGTGLLQPSGGTQSKVVPIASLTPYQSKWTICAR 209
Query: 238 VTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGS 297
VT K ++R ++N RG+GK+F +L+D + GEIR T FN D+F+ +E K+Y S+G+
Sbjct: 210 VTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGA 268
Query: 298 LKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLI 357
LK A K F+ + ND E+ + + V C ED +P QF F I D+E +++VD+I
Sbjct: 269 LKIANKQFSAVKNDYEMTFNNETSVLPC-EDGHHLPTVQFDFTGIGDLESKAKDALVDII 327
Query: 358 GVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCND-DGLRLQHMCDSG 415
G+ SY ++ N E KR ++L DMSG+ V TLWG + DG R
Sbjct: 328 GICKSYEDSIKITVKSNNREVAKRNIYLMDMSGKVVTTTLWGEDADKFDGSRQ------- 380
Query: 416 VFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSIS--R 473
P++A+K RVSDF G+ + +S++ + + PD PEA++L+ WF+ EG+ VSIS R
Sbjct: 381 --PVMAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYKLRGWFDSEGQALDGVSISDHR 438
Query: 474 DSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCN 533
+ G KT+ + K E LG +K D+ + A +V+++ +N Y ACP + CN
Sbjct: 439 SGGAGGGNTNWKTLHEAKSENLGQGDKADYFSTVAAVVFLRKENCMYQACPT----QDCN 494
Query: 534 KKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDL 593
KKV++ +G + C++CD+ YR IL I D WVT FQE AE I+G + L
Sbjct: 495 KKVIDQQNGLYRCEKCDREFPNFKYRMILSANIADFQENQWVTCFQESAEAILGQNTMYL 554
Query: 594 YSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRF 653
LK ++N++ F EV +NA F + F+++VK ET++DE R+K+TV+ + ++ R
Sbjct: 555 GELK--EKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVMDVKPVDFRDYGRR 612
Query: 654 IL 655
++
Sbjct: 613 LI 614
>gi|343428808|emb|CBQ72353.1| probable replication factor-A protein 1 [Sporisorium reilianum
SRZ2]
Length = 633
Score = 342 bits (876), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 213/654 (32%), Positives = 341/654 (52%), Gaps = 80/654 (12%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PV Q++ +K + + R+R+++SDG Q MLA+Q+ +V SG L+ +
Sbjct: 27 PVCQILSIKKI-QATAASASNVGDRYRIIVSDGVHYAQAMLASQKRSMVESGELEKNCFI 85
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGV 121
R++++ N +QNR I+I++DL+V+ +P+++ GNP T V
Sbjct: 86 RVSQYASNSVQNRRILILLDLEVV-------------HKPTADR-----LGNP----TNV 123
Query: 122 SLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEF 181
D AR V K E+G G+ + N SA +NP
Sbjct: 124 D--------------DFVKTEGARGV---------KHELGGGASALGN-SALGNNPSAGR 159
Query: 182 SRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAK 241
+ P S A + + + + +P I PI L+PY +WTIKARVT+K
Sbjct: 160 TTPATSAMGGAGAAAKVGASGRPGGSSV--HAGMP--IYPIEGLSPYQNRWTIKARVTSK 215
Query: 242 GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPA 301
++RH++N RGDGK+F +LLD D GEI+ T FN D+F+ ++ +YL+S+ + A
Sbjct: 216 SDIRHWSNARGDGKLFSVNLLD-DSGEIKATGFNDAVDRFHPLLQENHVYLISKARVNIA 274
Query: 302 QKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVV- 360
+K F++L N+ EI + ++ ++ C D +P ++ F IN++E +E N D+IG++
Sbjct: 275 KKQFSNLQNEYEITFENSTEIEEC-TDATDVPEVKYEFVRINELESVEPNQTCDVIGILD 333
Query: 361 SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG----NFCNDDGLRLQHMCDSGV 416
SY + + + + QKR L L D RSV LTLWG F N+ G+ +
Sbjct: 334 SYGELSEIVSKASQRPVQKRELTLVDQGNRSVRLTLWGKNAETFPNNAGVDEK------- 386
Query: 417 FPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSL 476
P++A K +V DF G+ + S++ + I PD E+H L+ WF+ +G + Q + +
Sbjct: 387 -PVIAFKGVKVGDFGGRSLSMFSSSTMLINPDITESHVLRGWFDNDGAHAQFQPYTNAGV 445
Query: 477 SVGRADI--------RKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIG 528
R+T+ Q+KDE LG EKPD+ V AT+VYIK +N YTACP
Sbjct: 446 GGAGGAGGAGANLAERRTIVQVKDENLGMSEKPDYFNVRATVVYIKQENLYYTACP---- 501
Query: 529 DRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGM 588
CNKKV N + W C++CD+S + +YRYIL + D TG W++ F E A +++GM
Sbjct: 502 SDGCNKKVSLNHENNWRCEKCDRSYPQPEYRYILSTNVADATGQIWLSGFNEDATKLIGM 561
Query: 589 SAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKA 642
SA +L+ L+ + ++ +F V+ A Y F + K +TF+D RV+ T+ +A
Sbjct: 562 SAGELHQLR--EDSESEFNAVLHRAANRMYTFNCRAKMDTFNDTARVRYTISRA 613
>gi|213512619|ref|NP_001135257.1| Replication protein A 70 kDa DNA-binding subunit [Salmo salar]
gi|209155456|gb|ACI33960.1| Replication protein A 70 kDa DNA-binding subunit [Salmo salar]
Length = 607
Score = 341 bits (875), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 221/646 (34%), Positives = 342/646 (52%), Gaps = 87/646 (13%)
Query: 26 RFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSVVRLTKFTCNVIQN-RMIVIVMDLD 83
RFR+++SDG S ML+TQ N + L + +L + NV+++ R +V+++D++
Sbjct: 41 RFRLMMSDGQHSMSSFMLSTQLNPMAEDNRLAPNCICQLKRNVTNVLKDGRRVVVILDME 100
Query: 84 VIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVSL--QHHNNTRVSQLPGDTDAV 141
V+ S++E G + G PQ G S Q N V LP
Sbjct: 101 VV---------------KSADEVAGKI-GEPQPYVEGQSKAPQSAPNPSVHPLP------ 138
Query: 142 PAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSP 201
P N + G P EF + P P
Sbjct: 139 ----------PQNGIDGSMNKG-------------PSREFGGKKGMPPSAMPSTP----- 170
Query: 202 SMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDL 261
G S ++++PIA+LNPY KWTI+ARVT K +R ++N RGDGK+F ++
Sbjct: 171 ---------GGS---AKVVPIASLNPYQSKWTIRARVTNKSGIRTWSNSRGDGKLFSMEI 218
Query: 262 LDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSM 321
+D + GEIRVT F D+FY +E GK++ +S+GSLK A K ++ L ND E+ L+ S
Sbjct: 219 VD-ESGEIRVTAFTQEVDKFYSIIETGKVFYISKGSLKIANKQYSSLKNDYEMTLNGEST 277
Query: 322 VQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRT 381
+ C ED +P Q +F I D++ E ++++D+IGV +S L KN E KRT
Sbjct: 278 IIPC-EDTQDVPMVQCNFVSIADLQAREKDTILDVIGVCKSVSDVTRLNTKNNREVSKRT 336
Query: 382 LHLRDMSGRSVELTLWGNFC-NDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTIST 440
L+L D SG+ VE+TLWG N DG SG PILA+K ++SD+ G+ + +
Sbjct: 337 LNLMDQSGKLVEVTLWGEEAENFDG--------SGQ-PILAIKGAKLSDYGGRSLSASFS 387
Query: 441 TQLFIEPDFPEAHRLKEWFEKEGKNT--QSVSISRDSLSVGRADIRKTVSQIKDEGLGTK 498
+ + + PD PEA++L+ W++KEG + QS++ +R G + KT++ IK E LG
Sbjct: 388 STVMVNPDIPEAYKLRGWYDKEGHSMDGQSLTEARTGGGGGNTNW-KTLADIKTEHLGHG 446
Query: 499 EKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDY 558
+K D+ + ATIVYI+ +N Y ACP + CNKKV++ +G + C++CD+ Y
Sbjct: 447 DKADYFSCIATIVYIRKENCLYQACP----SQDCNKKVVDQQNGMFRCEKCDKEFPNFKY 502
Query: 559 RYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKY 618
R IL I D+ WVT FQE AE I+G +A L LK D N+ F E+ + A F +
Sbjct: 503 RLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLK--DSNEAAFEEIFQQANFHTF 560
Query: 619 LFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSG 664
+F+ +VK ET++DE R+K+TV++ + ++ ++ ++ + K+ S
Sbjct: 561 VFRNRVKLETYNDESRIKATVMEVKPVDHKEYSKRLIMNIRKMASA 606
>gi|18390321|ref|NP_080929.1| replication protein A 70 kDa DNA-binding subunit isoform 2 [Mus
musculus]
gi|81879403|sp|Q8VEE4.1|RFA1_MOUSE RecName: Full=Replication protein A 70 kDa DNA-binding subunit;
Short=RP-A p70; AltName: Full=Replication factor A
protein 1; Short=RF-A protein 1
gi|17512293|gb|AAH19119.1| Replication protein A1 [Mus musculus]
gi|74139176|dbj|BAE38476.1| unnamed protein product [Mus musculus]
gi|74139822|dbj|BAE31755.1| unnamed protein product [Mus musculus]
gi|74178123|dbj|BAE29849.1| unnamed protein product [Mus musculus]
gi|74195120|dbj|BAE28302.1| unnamed protein product [Mus musculus]
gi|74195944|dbj|BAE30530.1| unnamed protein product [Mus musculus]
gi|74222487|dbj|BAE38134.1| unnamed protein product [Mus musculus]
gi|148680853|gb|EDL12800.1| replication protein A1 [Mus musculus]
Length = 623
Score = 341 bits (874), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 222/661 (33%), Positives = 346/661 (52%), Gaps = 74/661 (11%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQV++++ + + ++ R+R+++SDG + MLATQ N LV G L V
Sbjct: 23 PILQVINIRPISTG------NRSPRYRLLMSDGLNTLSSFMLATQLNTLVEGGQLASNCV 76
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
++ KF N +++ R +V++MDL+V+ S E G GNP
Sbjct: 77 CQVHKFIVNTLKDGRKVVVLMDLEVM----------------KSAEDVGLKIGNPVPYNE 120
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
G + + Q AVP+ S P KP+ GS + +A
Sbjct: 121 G-----YGQQQQQQQQQQQQAVPSP---ASAATPPASKPQPQNGSLGMGSTAAKAYGASK 172
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSE-VPSRIIPIAALNPYMGKWTIKARV 238
F +P A GL+ S S+++PIA+L PY KWTI ARV
Sbjct: 173 PFGKP--------------------AGTGLLQPSGGTQSKVVPIASLTPYQSKWTICARV 212
Query: 239 TAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSL 298
T K ++R ++N RG+GK+F +L+D + GEIR T FN D+F+ +E K+Y S+G+L
Sbjct: 213 TNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGAL 271
Query: 299 KPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIG 358
K A K F+ + ND E+ + + V C ED +P QF F I D+E +++VD+IG
Sbjct: 272 KIANKQFSAVKNDYEMTFNNETSVLPC-EDGHHLPTVQFDFTGIGDLESKAKDALVDIIG 330
Query: 359 VV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCND-DGLRLQHMCDSGV 416
+ SY ++ N E KR ++L DMSG+ V TLWG + DG R
Sbjct: 331 ICKSYEDSIKITVKSNNREVAKRNIYLMDMSGKVVTTTLWGEDADKFDGSRQ-------- 382
Query: 417 FPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSIS--RD 474
P++A+K RVSDF G+ + +S++ + + PD PEA++L+ WF+ EG+ VSIS R
Sbjct: 383 -PVMAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYKLRGWFDSEGQALDGVSISDHRS 441
Query: 475 SLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNK 534
+ G KT+ + K E LG +K D+ + A +V+++ +N Y ACP + CNK
Sbjct: 442 GGAGGGNTNWKTLHEAKSENLGQGDKADYFSTVAAVVFLRKENCMYQACPT----QDCNK 497
Query: 535 KVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLY 594
KV++ +G + C++CD+ YR IL I D WVT FQE AE I+G + L
Sbjct: 498 KVIDQQNGLYRCEKCDREFPNFKYRMILSANIADFQENQWVTCFQESAEAILGQNTMYLG 557
Query: 595 SLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFI 654
LK ++N++ F EV +NA F + F+++VK ET++DE R+K+TV+ + ++ R +
Sbjct: 558 ELK--EKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVMDVKPVDFRDYGRRL 615
Query: 655 L 655
+
Sbjct: 616 I 616
>gi|332257541|ref|XP_003277864.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit
[Nomascus leucogenys]
Length = 616
Score = 340 bits (872), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 181/443 (40%), Positives = 268/443 (60%), Gaps = 21/443 (4%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
S+++PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D + GEIR T FN
Sbjct: 182 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNE 240
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
D+F+ +E K+Y S+G+LK A K F + ND E+ + + V C EDD +P Q
Sbjct: 241 QVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC-EDDHHLPTVQ 299
Query: 337 FHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F I+D+E +S+VD+IG+ SY T +R N E KR ++L D SG+ V T
Sbjct: 300 FDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTAT 359
Query: 396 LWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
LWG + DG R P+LA+K RVSDF G+ + +S++ + + PD PEA++
Sbjct: 360 LWGEDADKFDGSRQ---------PVLAIKGARVSDFGGRSLSVLSSSTIIVNPDIPEAYK 410
Query: 455 LKEWFEKEGKNTQSVSISR-DSLSVGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVY 512
L+ WF+ EG+ VSIS S VG A+ KT+ ++K E LG +KPD+ + AT+VY
Sbjct: 411 LRGWFDAEGQALDGVSISDLKSGGVGGANTNWKTLYEVKSENLGQGDKPDYFSSVATVVY 470
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
++ +N Y ACP + CNKKV++ +G + C++CD YR IL I D
Sbjct: 471 LRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDTEFPSFKYRMILSVNIADFQEN 526
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
WVT FQE AE I+G +A L LK D+N++ F EV +NA F ++F+++VK ET++DE
Sbjct: 527 QWVTCFQESAEAILGQNAAYLGELK--DKNEQAFEEVFQNANFRSFIFRVRVKVETYNDE 584
Query: 633 QRVKSTVVKAERYNYSSETRFIL 655
R+K+TV+ + +Y R ++
Sbjct: 585 SRIKATVMDVKPVDYREYGRRLV 607
>gi|449532803|ref|XP_004173368.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Cucumis sativus]
Length = 374
Score = 337 bits (865), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 179/357 (50%), Positives = 232/357 (64%), Gaps = 43/357 (12%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P+LQV+DLKLV QQ +RFR+++SDG+ QQGML TQ NELV SG LQ GS+V
Sbjct: 30 PILQVIDLKLV----NTSQQSGSERFRLLVSDGTHFQQGMLGTQLNELVKSGKLQKGSIV 85
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNP------- 114
RL ++ CN +Q R+I+IV++LDVI + CD IG+PV A R S+N +++GNP
Sbjct: 86 RLRQYVCNPVQERLIIIVIELDVIEEMCDIIGEPVSATRSSAN----ALSGNPLPSVGGL 141
Query: 115 ----------QSNATGVSLQHH--NNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGA 162
+ N + S + N + V + ++ R S PP+Y K + G+
Sbjct: 142 GASPGSGMIGKGNVSSASFEQPKVNQSHVPHMGSYSNPPETGRFSASIAPPSYSKTDSGS 201
Query: 163 G-------SGSFSNQSASFSN-----PRPEFSRPYASNYARTPQAPYMQSPSMYANRGLV 210
+GS+ +Q ++ N PRP P SN PQ Y Q PSMY+NRG +
Sbjct: 202 RFNGPSPLTGSYGDQKMAYHNSGSDIPRP----PLNSNAYARPQPIYQQPPSMYSNRGPI 257
Query: 211 GKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIR 270
K+E RI+PI+ALNPY G+WTIKARVT+KGELRHYNN RGDGKVF FDLLD+ GEIR
Sbjct: 258 AKNEAAPRIMPISALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAYRGEIR 317
Query: 271 VTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE 327
VTCFN VADQFY+Q+E+GK+Y +S+GSLKPAQKNFNHL ND EIFL+ TS +Q C+E
Sbjct: 318 VTCFNTVADQFYNQIESGKVYFISKGSLKPAQKNFNHLKNDYEIFLENTSTIQPCFE 374
>gi|426383460|ref|XP_004058298.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit
[Gorilla gorilla gorilla]
Length = 648
Score = 337 bits (864), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 180/443 (40%), Positives = 267/443 (60%), Gaps = 21/443 (4%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
S+++PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D + GEIR T FN
Sbjct: 214 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNE 272
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
D+F+ +E K+Y S+G+LK A K F + ND E+ + + V C EDD +P Q
Sbjct: 273 QVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC-EDDHHLPTVQ 331
Query: 337 FHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F I+D+E +S+VD+IG+ SY T +R N E KR ++L D SG+ V T
Sbjct: 332 FDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTAT 391
Query: 396 LWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
LWG + DG R P+LA+K RVSDF G+ + +S++ + PD PEA++
Sbjct: 392 LWGEDADKFDGSRQ---------PVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYK 442
Query: 455 LKEWFEKEGKNTQSVSISR-DSLSVGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVY 512
L+ WF+ EG+ VSIS S VG ++ KT+ ++K E LG +KPD+ + AT+VY
Sbjct: 443 LRGWFDAEGQALDGVSISDLKSGGVGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVY 502
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
++ +N Y ACP + CNKKV++ +G + C++CD YR IL I D
Sbjct: 503 LRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQEN 558
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
WVT FQE AE I+G +A L LK D+N++ F EV +NA F ++F+++VK ET++DE
Sbjct: 559 QWVTCFQESAEAILGQNAAYLGELK--DKNEQAFEEVFQNANFRSFIFRVRVKVETYNDE 616
Query: 633 QRVKSTVVKAERYNYSSETRFIL 655
R+K+TV+ + +Y R ++
Sbjct: 617 SRIKATVMDVKPVDYREYGRRLV 639
>gi|367023819|ref|XP_003661194.1| hypothetical protein MYCTH_2300304 [Myceliophthora thermophila ATCC
42464]
gi|347008462|gb|AEO55949.1| hypothetical protein MYCTH_2300304 [Myceliophthora thermophila ATCC
42464]
Length = 614
Score = 337 bits (864), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 214/667 (32%), Positives = 346/667 (51%), Gaps = 87/667 (13%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
+PVLQ + +K + +K +R+R+VLSD Q MLATQ N +V GLLQ GS+
Sbjct: 27 VPVLQCLHIKFLENKNPGVPG--PERYRIVLSDIRNYVQCMLATQANRVVHDGLLQKGSI 84
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATG 120
VR+ ++ ++ + I+I++DLDV+ +G P G+P+
Sbjct: 85 VRVKQYQAQSVKGKSILIILDLDVMTH----LGTP-------------DKIGDPKLMEAA 127
Query: 121 VSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAG-SGSFSNQSASFSNPRP 179
S Q N T +G GAG G ++ A+ +P
Sbjct: 128 PSEQQQNTT-----------------IG------------GAGFYGGAKSEPAAVHETKP 158
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVT 239
+ R AS + + ++Y PI A++PY KWTIK RVT
Sbjct: 159 QVQRQVASRTGGGGGSGGHAASTIY----------------PIEAISPYANKWTIKVRVT 202
Query: 240 AKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSR-GSL 298
+K ++R ++ +GK+F +LLD + GEIR T FN DQFY ++ G +Y +S +
Sbjct: 203 SKSDIRTWHKTHSEGKLFSVNLLD-ESGEIRATAFNQEVDQFYDLLQEGSVYYISTPCKV 261
Query: 299 KPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIG 358
+ A+K F++L ND E+ L+ ++++ +D +S+P+ +F+F I +++G+E ++ VD+IG
Sbjct: 262 QLAKKQFSNLANDYELMLESGTVIERA-DDQSSVPQVRFNFCTIQELQGVEKDATVDVIG 320
Query: 359 VVSYISPTASLMRKNGTET-QKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVF 417
V+ ++ + K + KR L L D +G SV +T+WG + D+
Sbjct: 321 VLKEVNELEQITSKTTQKPYDKRELTLVDDTGYSVRVTIWGKTARE--------FDASPE 372
Query: 418 PILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVS---ISRD 474
++A K RVSDF G+ + +S+ + I+PD PEAH+LK W+E +G+N + +S
Sbjct: 373 SVIACKGTRVSDFGGRSLSLLSSGTMAIDPDIPEAHKLKGWYEAQGRNNTFATHSNLSSV 432
Query: 475 SLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNK 534
+ GR D K ++QIK+E LG +K D+ TV TIV+++ +NF Y ACP CNK
Sbjct: 433 GAATGRKDDAKWIAQIKNENLGV-DKTDYFTVKGTIVHMRQENFAYPACP----SESCNK 487
Query: 535 KVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLY 594
KV + GDG W C++C+ + YRYI+ I DHTG W++ F E A IMG +A ++
Sbjct: 488 KVTDMGDGTWRCEKCNITHDRPQYRYIMSVCISDHTGNVWISCFDEQARLIMGKTADEMM 547
Query: 595 SLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFI 654
L+ DQ + N K F+ + K ETF+++ RV+ +V A +Y SE +
Sbjct: 548 ELREQDQAAFEAAFDAANC--RKMSFRCRAKMETFAEQPRVRISVWNAAPLDYKSEAHRL 605
Query: 655 LDLMDKL 661
+L+ ++
Sbjct: 606 AELIKEM 612
>gi|62089044|dbj|BAD92969.1| replication protein A1, 70kDa variant [Homo sapiens]
Length = 630
Score = 337 bits (864), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 180/443 (40%), Positives = 267/443 (60%), Gaps = 21/443 (4%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
S+++PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D + GEIR T FN
Sbjct: 196 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNE 254
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
D+F+ +E K+Y S+G+LK A K F + ND E+ + + V C EDD +P Q
Sbjct: 255 QVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC-EDDHHLPTVQ 313
Query: 337 FHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F I+D+E +S+VD+IG+ SY T +R N E KR ++L D SG+ V T
Sbjct: 314 FDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDASGKVVTAT 373
Query: 396 LWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
LWG + DG R P+LA+K RVSDF G+ + +S++ + PD PEA++
Sbjct: 374 LWGEDADKFDGSRQ---------PVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYK 424
Query: 455 LKEWFEKEGKNTQSVSISR-DSLSVGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVY 512
L+ WF+ EG+ VSIS S VG ++ KT+ ++K E LG +KPD+ + AT+VY
Sbjct: 425 LRGWFDAEGQALDGVSISDLKSGGVGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVY 484
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
++ +N Y ACP + CNKKV++ +G + C++CD YR IL I D
Sbjct: 485 LRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQEN 540
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
WVT FQE AE I+G +A L LK D+N++ F EV +NA F ++F+++VK ET++DE
Sbjct: 541 QWVTCFQESAEAILGQNAAYLGELK--DKNEQAFEEVFQNANFRSFIFRVRVKVETYNDE 598
Query: 633 QRVKSTVVKAERYNYSSETRFIL 655
R+K+TV+ + +Y R ++
Sbjct: 599 SRIKATVMDVKPVDYREYGRRLV 621
>gi|4506583|ref|NP_002936.1| replication protein A 70 kDa DNA-binding subunit [Homo sapiens]
gi|1350579|sp|P27694.2|RFA1_HUMAN RecName: Full=Replication protein A 70 kDa DNA-binding subunit;
Short=RP-A p70; AltName: Full=Replication factor A
protein 1; Short=RF-A protein 1; AltName:
Full=Single-stranded DNA-binding protein
gi|337489|gb|AAA36584.1| replication protein A, 70-kDa subunit [Homo sapiens]
gi|17390283|gb|AAH18126.1| Replication protein A1, 70kDa [Homo sapiens]
gi|46430939|gb|AAS94324.1| replication protein A1, 70kDa [Homo sapiens]
gi|119610980|gb|EAW90574.1| replication protein A1, 70kDa [Homo sapiens]
gi|158260431|dbj|BAF82393.1| unnamed protein product [Homo sapiens]
gi|313883656|gb|ADR83314.1| replication protein A1, 70kDa [synthetic construct]
Length = 616
Score = 337 bits (863), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 180/443 (40%), Positives = 267/443 (60%), Gaps = 21/443 (4%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
S+++PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D + GEIR T FN
Sbjct: 182 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNE 240
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
D+F+ +E K+Y S+G+LK A K F + ND E+ + + V C EDD +P Q
Sbjct: 241 QVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC-EDDHHLPTVQ 299
Query: 337 FHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F I+D+E +S+VD+IG+ SY T +R N E KR ++L D SG+ V T
Sbjct: 300 FDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTAT 359
Query: 396 LWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
LWG + DG R P+LA+K RVSDF G+ + +S++ + PD PEA++
Sbjct: 360 LWGEDADKFDGSRQ---------PVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYK 410
Query: 455 LKEWFEKEGKNTQSVSISR-DSLSVGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVY 512
L+ WF+ EG+ VSIS S VG ++ KT+ ++K E LG +KPD+ + AT+VY
Sbjct: 411 LRGWFDAEGQALDGVSISDLKSGGVGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVY 470
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
++ +N Y ACP + CNKKV++ +G + C++CD YR IL I D
Sbjct: 471 LRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQEN 526
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
WVT FQE AE I+G +A L LK D+N++ F EV +NA F ++F+++VK ET++DE
Sbjct: 527 QWVTCFQESAEAILGQNAAYLGELK--DKNEQAFEEVFQNANFRSFIFRVRVKVETYNDE 584
Query: 633 QRVKSTVVKAERYNYSSETRFIL 655
R+K+TV+ + +Y R ++
Sbjct: 585 SRIKATVMDVKPVDYREYGRRLV 607
>gi|168277810|dbj|BAG10883.1| replication protein A 70 kDa DNA-binding subunit [synthetic
construct]
Length = 616
Score = 337 bits (863), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 180/443 (40%), Positives = 267/443 (60%), Gaps = 21/443 (4%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
S+++PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D + GEIR T FN
Sbjct: 182 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNE 240
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
D+F+ +E K+Y S+G+LK A K F + ND E+ + + V C EDD +P Q
Sbjct: 241 QVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC-EDDHHLPTVQ 299
Query: 337 FHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F I+D+E +S+VD+IG+ SY T +R N E KR ++L D SG+ V T
Sbjct: 300 FDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDASGKVVTAT 359
Query: 396 LWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
LWG + DG R P+LA+K RVSDF G+ + +S++ + PD PEA++
Sbjct: 360 LWGEDADKFDGSRQ---------PVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYK 410
Query: 455 LKEWFEKEGKNTQSVSISR-DSLSVGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVY 512
L+ WF+ EG+ VSIS S VG ++ KT+ ++K E LG +KPD+ + AT+VY
Sbjct: 411 LRGWFDAEGQALDGVSISDLKSGGVGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVY 470
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
++ +N Y ACP + CNKKV++ +G + C++CD YR IL I D
Sbjct: 471 LRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQEN 526
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
WVT FQE AE I+G +A L LK D+N++ F EV +NA F ++F+++VK ET++DE
Sbjct: 527 QWVTCFQESAEAILGQNAAYLGELK--DKNEQAFEEVFQNANFRSFIFRVRVKVETYNDE 584
Query: 633 QRVKSTVVKAERYNYSSETRFIL 655
R+K+TV+ + +Y R ++
Sbjct: 585 SRIKATVMDVKPVDYREYGRRLV 607
>gi|332846842|ref|XP_511254.3| PREDICTED: replication protein A 70 kDa DNA-binding subunit [Pan
troglodytes]
gi|410218106|gb|JAA06272.1| replication protein A1, 70kDa [Pan troglodytes]
gi|410264556|gb|JAA20244.1| replication protein A1, 70kDa [Pan troglodytes]
gi|410300150|gb|JAA28675.1| replication protein A1, 70kDa [Pan troglodytes]
gi|410340247|gb|JAA39070.1| replication protein A1, 70kDa [Pan troglodytes]
Length = 616
Score = 337 bits (863), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 180/443 (40%), Positives = 267/443 (60%), Gaps = 21/443 (4%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
S+++PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D + GEIR T FN
Sbjct: 182 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNE 240
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
D+F+ +E K+Y S+G+LK A K F + ND E+ + + V C EDD +P Q
Sbjct: 241 QVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC-EDDRHLPTVQ 299
Query: 337 FHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F I+D+E +S+VD+IG+ SY T +R N E KR ++L D SG+ V T
Sbjct: 300 FDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTAT 359
Query: 396 LWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
LWG + DG R P+LA+K RVSDF G+ + +S++ + PD PEA++
Sbjct: 360 LWGEDADKFDGSRQ---------PVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYK 410
Query: 455 LKEWFEKEGKNTQSVSISR-DSLSVGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVY 512
L+ WF+ EG+ VSIS S VG ++ KT+ ++K E LG +KPD+ + AT+VY
Sbjct: 411 LRGWFDAEGQALDGVSISDLKSGGVGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVY 470
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
++ +N Y ACP + CNKKV++ +G + C++CD YR IL I D
Sbjct: 471 LRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQEN 526
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
WVT FQE AE I+G +A L LK D+N++ F EV +NA F ++F+++VK ET++DE
Sbjct: 527 QWVTCFQESAEAILGQNAAYLGELK--DKNEQAFEEVFQNANFRSFIFRVRVKVETYNDE 584
Query: 633 QRVKSTVVKAERYNYSSETRFIL 655
R+K+TV+ + +Y R ++
Sbjct: 585 SRIKATVMDVKPVDYREYGRRLV 607
>gi|355767985|gb|EHH62675.1| Replication protein A 70 kDa DNA-binding subunit, partial [Macaca
fascicularis]
Length = 499
Score = 337 bits (863), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 180/443 (40%), Positives = 266/443 (60%), Gaps = 21/443 (4%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
S+++PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D + GEIR T FN
Sbjct: 65 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNE 123
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
D+F+ +E K+Y S+G+LK A K F + ND E+ + + V C EDD +P Q
Sbjct: 124 QVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC-EDDRHLPTVQ 182
Query: 337 FHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F I+D+E +S+VD+IG+ SY T +R N E KR ++L D SG+ V T
Sbjct: 183 FDFTGIDDLESKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTAT 242
Query: 396 LWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
LWG + DG R P+LA+K RVSDF G+ + +S++ + PD PEA++
Sbjct: 243 LWGEDADKFDGSRQ---------PVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYK 293
Query: 455 LKEWFEKEGKNTQSVSISR-DSLSVGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVY 512
L+ WF+ EG+ VSIS S VG + KT+ ++K E LG +KPD+ + AT+VY
Sbjct: 294 LRGWFDAEGQALDGVSISDLKSGGVGGGNTNWKTLYEVKSENLGQGDKPDYFSSVATVVY 353
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
++ +N Y ACP + CNKKV++ +G + C++CD YR IL I D
Sbjct: 354 LRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQEN 409
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
WVT FQE AE I+G +A L LK D+N++ F EV +NA F ++F+++VK ET++DE
Sbjct: 410 QWVTCFQESAEAILGQNAAYLGELK--DKNEQAFEEVFQNANFRSFIFRVRVKVETYNDE 467
Query: 633 QRVKSTVVKAERYNYSSETRFIL 655
R+K+TV+ + +Y R ++
Sbjct: 468 SRIKATVMDVKSVDYREYGRRLV 490
>gi|390462862|ref|XP_002747872.2| PREDICTED: replication protein A 70 kDa DNA-binding subunit
[Callithrix jacchus]
Length = 672
Score = 336 bits (861), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 182/469 (38%), Positives = 271/469 (57%), Gaps = 31/469 (6%)
Query: 201 PSMYANRGLVGKSEVPS----------RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQ 250
P Y GK+ PS +++PIA+L PY KWTI ARVT K ++R ++N
Sbjct: 212 PKAYGASKTFGKAGGPSLSSTSGGTQAKVVPIASLTPYQSKWTICARVTNKSQIRTWSNS 271
Query: 251 RGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHN 310
RG+GK+F +L+D + EIR T FN D+F+ +E K+Y S+G+LK A K F + N
Sbjct: 272 RGEGKLFSLELVD-ESAEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKN 330
Query: 311 DLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVV-SYISPTASL 369
D E+ + + V C EDD +P QF F I+++E +S+VD+IG+ SY T
Sbjct: 331 DYEMTFNNETSVMPC-EDDHHLPTVQFDFTGIDNLESKSKDSLVDIIGICKSYEDATKIT 389
Query: 370 MRKNGTETQKRTLHLRDMSGRSVELTLWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVS 428
+R N E KR ++L D SG+ V TLWG + DG R P+LA+K RVS
Sbjct: 390 VRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQ---------PVLAIKGARVS 440
Query: 429 DFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSIS--RDSLSVGRADIRKT 486
DF G+ + +S++ + + PD PEA++L+ WF+ EG+ VSIS + G + KT
Sbjct: 441 DFGGRSLSVLSSSTIIVNPDIPEAYKLRGWFDSEGQALDGVSISDLKSGGLGGSSTNWKT 500
Query: 487 VSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHC 546
+ ++K E LG +KPD+ + AT+VY++ +N Y ACP + CNKKV++ +G + C
Sbjct: 501 LYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPT----QDCNKKVIDQQNGLYRC 556
Query: 547 DRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKF 606
++CD YR IL I D WVT FQE AE I+G SA L LK D+N++ F
Sbjct: 557 EKCDTEFPSFKYRMILSVNIADFQENQWVTCFQESAEAILGQSAAYLGELK--DKNEQAF 614
Query: 607 GEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
EV +NA F ++F+++VK ET++DE R+K+TV+ + +Y R ++
Sbjct: 615 EEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLV 663
>gi|397491957|ref|XP_003816902.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit [Pan
paniscus]
Length = 616
Score = 336 bits (861), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 180/443 (40%), Positives = 267/443 (60%), Gaps = 21/443 (4%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
S+++PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D + GEIR T FN
Sbjct: 182 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNE 240
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
D+F+ +E K+Y S+G+LK A K F + ND E+ + + V C EDD +P Q
Sbjct: 241 QVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC-EDDRHLPTVQ 299
Query: 337 FHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F I+D+E +S+VD+IG+ SY T +R N E KR ++L D SG+ V T
Sbjct: 300 FDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTAT 359
Query: 396 LWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
LWG + DG R P+LA+K RVSDF G+ + +S++ + PD PEA++
Sbjct: 360 LWGEDADKFDGSRQ---------PVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYK 410
Query: 455 LKEWFEKEGKNTQSVSISR-DSLSVGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVY 512
L+ WF+ EG+ VSIS S VG ++ KT+ ++K E LG +KPD+ + AT+VY
Sbjct: 411 LRGWFDSEGQALDGVSISDLKSGGVGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVY 470
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
++ +N Y ACP + CNKKV++ +G + C++CD YR IL I D
Sbjct: 471 LRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQEN 526
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
WVT FQE AE I+G +A L LK D+N++ F EV +NA F ++F+++VK ET++DE
Sbjct: 527 QWVTCFQESAEAILGHNAAYLGELK--DKNEQAFEEVFQNANFRSFIFRVRVKVETYNDE 584
Query: 633 QRVKSTVVKAERYNYSSETRFIL 655
R+K+TV+ + +Y R ++
Sbjct: 585 SRIKATVMDVKPVDYREYGRRLV 607
>gi|405970353|gb|EKC35267.1| Replication protein A 70 kDa DNA-binding subunit [Crassostrea
gigas]
Length = 624
Score = 336 bits (861), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 216/663 (32%), Positives = 343/663 (51%), Gaps = 61/663 (9%)
Query: 11 LVVSKQQQQQQHQQQRFRMVLSDGSRS-QQGMLATQRNELVTSGLLQIGSVVRLTKFTCN 69
L SK+ Q R+R++LSDG S MLATQ N L+ G L +V+++ K+ CN
Sbjct: 11 LESSKKITAQGSSADRYRLLLSDGEVSYSHAMLATQLNSLM-DGELDNLAVIQVDKYLCN 69
Query: 70 VIQ-NRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQ----SNATGVSLQ 124
IQ +R ++I++DL V+ QR S + G GNPQ + G + +
Sbjct: 70 TIQGDRRVMILLDLHVL-------------QRGS---EVGQRIGNPQQYKAAATQGTTAE 113
Query: 125 HHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGS--GSFSNQSASFSNPRPEFS 182
H N Q A H + PP K E G S G+ S++ + + + +
Sbjct: 114 HRN---PQQYKASASQGTTAEHNSAQCPPQMPKQEGGGQSFIGTVSDKQVNNNIKKENMN 170
Query: 183 RPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKG 242
Y+ N G G SR+ I +L PY +W I+ARVT K
Sbjct: 171 GNSKGGYSLKTN-----------NSG--GTPGGTSRVHKIDSLTPYQNRWKIRARVTQKS 217
Query: 243 ELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+R ++N RG+GK+F L D D EIR T FN D+FY +E K+Y S+ +LK A
Sbjct: 218 GIRTWSNSRGEGKLFSVTLTD-DSAEIRATGFNDAVDKFYELLEVNKVYYFSKATLKTAN 276
Query: 303 KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSY 362
K + + ND E+ + ++++ C +DD+S+P F+F IN++E S++D+IGVV
Sbjct: 277 KQYTTVQNDYEMTFNPDTIIEPC-DDDSSLPTMNFNFVKINELESKAPTSLIDVIGVVKN 335
Query: 363 ISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILA 421
+++ +++ E KR L + D SG SV LTLWG Q SG P++A
Sbjct: 336 CGDVTTIIGKQSQKEITKRDLQIVDQSGMSVNLTLWG-------ADAQQFDGSG-HPVIA 387
Query: 422 VKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRA 481
VK +VSD+ G+ + ++++Q+ PD E H LK WFE +G N D + G
Sbjct: 388 VKGAKVSDYGGRSLSAMASSQIIHNPDLREGHMLKGWFEHDGHNMDFHGYKNDGMGGGGG 447
Query: 482 DIR--KTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNN 539
K ++IK E +G +KP++ T AT+++++ +N Y ACP CNKKV++
Sbjct: 448 GSTNWKCFAEIKSENIGA-DKPEYFTTKATVLFLRKENCMYQACPT----ESCNKKVVDQ 502
Query: 540 GDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYV 599
G+G + C++C + +R IL + D++ WVT FQE AE ++G+ A DL +LK
Sbjct: 503 GNGMYRCEKCAREFPNYKWRMILSANLGDYSDNQWVTCFQESAEAMLGIKADDLGALK-- 560
Query: 600 DQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMD 659
D N++ F +V A F Y+FK + K ET++DE R+K+ + A ++ +++ +++ +
Sbjct: 561 DSNEQAFDQVFTEACFKSYIFKFRAKVETYNDESRLKTVTMNASTIDFKEQSQRLIEEIK 620
Query: 660 KLK 662
KL+
Sbjct: 621 KLQ 623
>gi|291405375|ref|XP_002719090.1| PREDICTED: replication protein A1 [Oryctolagus cuniculus]
Length = 613
Score = 335 bits (859), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 221/660 (33%), Positives = 346/660 (52%), Gaps = 81/660 (12%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQV++++ + + + R+R+++SDG + MLATQ N LV L +
Sbjct: 20 PILQVINIRPITTG------NSPPRYRLLMSDGLNTLSSFMLATQLNPLVEEERLSSNCI 73
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
++ +F N +++ R +VI+M+++V+ S E G GNP
Sbjct: 74 CQVNRFIVNTLKDGRRVVILMEVEVL----------------KSAEAVGMKIGNPVPYNE 117
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
G H + P + PA+ KP+ GS P
Sbjct: 118 G-----HGQQQALPPPVTAASAPAS------------KPQQQNGSAGMG----------P 150
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVT 239
S+ + ++ A S+ G S+++PIA+L PY KWTI ARVT
Sbjct: 151 PVSKSFGASKAFGKSG----GSSLLNTAG-----GTQSKVVPIASLTPYQSKWTICARVT 201
Query: 240 AKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLK 299
K ++R ++N RG+GK+F +L+D + GEIR T FN D+F+ +E K+Y S+G+LK
Sbjct: 202 NKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLK 260
Query: 300 PAQKNFNHLHNDLEI-FLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIG 358
A K F + ND E+ F++ TS V C ED +P QF F I+ +E +S+VD+IG
Sbjct: 261 IANKQFTAVKNDYEMTFVNETS-VMPC-EDGHHLPTVQFAFTGIDALENKPKDSLVDIIG 318
Query: 359 VV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVF 417
+ SY T ++ N E KR ++L D SG+ V TLWG +D R D
Sbjct: 319 ICKSYEDATKITVKSNNREVAKRNIYLMDTSGKVVTATLWG----EDADRF----DGSRQ 370
Query: 418 PILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISR-DSL 476
P+LA+K RVSDF G+ + +S++ + + PD PEA++L+ WF+ EG+ VSIS S
Sbjct: 371 PVLAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYKLRGWFDSEGQALDGVSISDLKSG 430
Query: 477 SVGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKK 535
+G ++ KT+ ++K E LG +K D+ + AT+VY++ +N Y ACP + CNKK
Sbjct: 431 GMGGSNTNWKTLYEVKSENLGQGDKADYFSSVATVVYLRKENCMYQACPT----QDCNKK 486
Query: 536 VMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYS 595
V++ +G + C++CD YR IL I D WVT FQE AE I+G + L
Sbjct: 487 VIDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNTAYLGE 546
Query: 596 LKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
LK ++N++ F EV +NA F + F+++VK ET++DE R+K+TV+ + +Y R ++
Sbjct: 547 LK--EKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVMDVKPVDYREHARRLI 604
>gi|417411795|gb|JAA52323.1| Putative replication factor-a protein 1, partial [Desmodus
rotundus]
Length = 588
Score = 335 bits (858), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 174/443 (39%), Positives = 269/443 (60%), Gaps = 21/443 (4%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
++++PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D + GEIR T FN
Sbjct: 154 AKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNE 212
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
AD+F+ ++ K+Y S+G+LK A K F + ND E+ + + V C ED ++P Q
Sbjct: 213 QADKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC-EDGRNLPTVQ 271
Query: 337 FHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F I+D+E +S+VD+IG+ SY T ++ N E KR ++L D SG+ V T
Sbjct: 272 FGFTKIDDLESKPKDSLVDVIGICKSYEDATKITVKANNREVSKRNIYLMDTSGKVVSAT 331
Query: 396 LWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
LWG + DG R P++A+K RVSDF G+ + IS++ + + PD PEA++
Sbjct: 332 LWGEDADKFDGSRQ---------PVMAIKGARVSDFGGRSLSVISSSTVIVNPDIPEAYK 382
Query: 455 LKEWFEKEGKNTQSVSIS--RDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVY 512
L+ WF+ EG+ VSIS + + G A KT+ ++K E LG +K D+ + AT+VY
Sbjct: 383 LRGWFDSEGQALDGVSISDLKSGGTAGSATNWKTLYEVKSENLGQGDKADYFSCVATVVY 442
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
++ +N Y ACP + CNKKV++ +G + C++CD+ YR IL I D+
Sbjct: 443 LRKENSMYQACPT----QDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSVNIADYQDN 498
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
WVT FQE AE I+G S L LK ++N++ F E+ +NA F ++FK++VK ET++DE
Sbjct: 499 QWVTCFQESAEAILGQSTAYLGELK--EKNEQAFEEIFQNANFRSFVFKIRVKLETYNDE 556
Query: 633 QRVKSTVVKAERYNYSSETRFIL 655
R+K+TV+ + +Y +R ++
Sbjct: 557 SRIKATVMDVKPVDYREYSRRMI 579
>gi|47221831|emb|CAG08885.1| unnamed protein product [Tetraodon nigroviridis]
Length = 631
Score = 334 bits (857), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 218/665 (32%), Positives = 351/665 (52%), Gaps = 77/665 (11%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
MPV + V + QQQQ +R +LATQ N L LL V
Sbjct: 39 MPVPYFI---FVFQRCAQQQQFVCMFYRAAF---------LLATQLNSLPEKNLLVPHCV 86
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
L + T N + + R +++V+D++++ S E+ G + GNP +
Sbjct: 87 CVLKRTTSNTLSDGRRVIVVLDMEIL----------------QSAEESGGLIGNPAAFKD 130
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
G++ P A+ P+ F P A +FS AS S P
Sbjct: 131 GMAS-----------PSTFSPAKAS--------PSTFSP-TKASPSTFSPAKASPSTFSP 170
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPS-RIIPIAALNPYMGKWTIKARV 238
+ P + +P SPS + + S PS +I IA LNPY+ KWTI+ARV
Sbjct: 171 TKASP-------STFSPAKASPSKVSPKKASSSSPGPSTNLISIAQLNPYLSKWTIRARV 223
Query: 239 TAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSL 298
K +R+++N RG+GK+F F ++D + GEI++T FN D+F+ VE GK+Y +S+ +L
Sbjct: 224 MNKASIRNWSNSRGEGKLFSFVVVD-ESGEIKITVFNNEVDKFFPLVEQGKVYYISKATL 282
Query: 299 KPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIG 358
K A K +N L++D E+ L S + C D IP Q F PI ++E + ++++D+IG
Sbjct: 283 KVANKQYNTLNHDYEMTLHAHSSIVPC-ADGQDIPAAQCDFVPIAELENRDKDAIIDVIG 341
Query: 359 VVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFP 418
V + + + + E KRTLHL D +G+ V TLWG ++ + D P
Sbjct: 342 VCKTVEDVSRITTRTSREVSKRTLHLIDTTGKMVAATLWG----EEAEKF----DGSEQP 393
Query: 419 ILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEG--KNTQSVSISRDSL 476
++A+K R+SDF G+ + T+ ++ + + PD PEA RL+ W++ G +++QS+S ++
Sbjct: 394 VVAIKGARLSDFGGRSLSTLFSSTVMVNPDIPEAIRLRAWYDHGGYAQDSQSLSETKSRG 453
Query: 477 SVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKV 536
S R + KT+S++K+E GT+ K D+ + AT++YI+ D+ Y ACP CNKKV
Sbjct: 454 SGARMNW-KTLSEVKNENFGTRRK-DYFSCVATLLYIRKDSCLYRACP----SSDCNKKV 507
Query: 537 MNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSL 596
++ +G + C++C+Q +YR +L + D WVT FQE AE ++G SA+ L L
Sbjct: 508 IDQFNGWFRCEKCNQDFPNFEYRLLLSANLADFGDNQWVTCFQETAEVLLGHSAETLGRL 567
Query: 597 KYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILD 656
+ D ++ F V + A FT Y+FK++VK ET++DE RVK+TV++ + ++ +R +L
Sbjct: 568 R--DTDEAAFDAVFQKANFTSYIFKIRVKLETYNDESRVKATVMEVQPLDHREYSRRLLG 625
Query: 657 LMDKL 661
+ KL
Sbjct: 626 NIRKL 630
>gi|405120230|gb|AFR95001.1| damaged DNA binding protein [Cryptococcus neoformans var. grubii
H99]
Length = 613
Score = 334 bits (857), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 220/675 (32%), Positives = 342/675 (50%), Gaps = 105/675 (15%)
Query: 3 VLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVR 62
V+QV+++K + S R+R +LSDG Q MLATQ N V S + S+V+
Sbjct: 26 VVQVLNVKKIASTDTTAVD----RYRAILSDGQYFIQAMLATQLNHFVESKQVDKHSLVK 81
Query: 63 LTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVS 122
+ F+ N + R ++I++ L+V+ P ++E+ GNP VS
Sbjct: 82 VVNFSVNSVSGRKLLIILALEVV---------------PWTDEK----IGNP------VS 116
Query: 123 L-QHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEF 181
+ Q S PG + P ++ + P P
Sbjct: 117 VDQAKGGASASAQPGGAHSAPL---------------------------QSTTTAPAPGR 149
Query: 182 SRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAK 241
++ A N P A P ++G +G + PI L+PY +WTIKARVT K
Sbjct: 150 AQVPARN---APSA----RPGNTKHKGDLGP------LYPIEGLSPYQNRWTIKARVTQK 196
Query: 242 GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPA 301
++RHY+NQRGDGK+F+ +D + GEIR T FN D FY+ +E GK++ VSR + A
Sbjct: 197 SDIRHYSNQRGDGKLFNVTFMD-ETGEIRATGFNDAVDNFYNLLEVGKVFFVSRARINIA 255
Query: 302 QKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVS 361
+K F++++N+ EI + + ++ C D S+P+ +++F+ I D+ ++ + V D+IGVV
Sbjct: 256 KKQFSNVNNEYEIMFERDTEIEPCA--DESVPQVKYNFKGIGDLGELQKDDVCDVIGVVR 313
Query: 362 YISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWG----NFCNDDGLRLQHMCDSGV 416
+ S+ R KR L L D SG+SV LTLWG F DD
Sbjct: 314 EVGELGSVTSRATNKPFAKRELQLVDQSGQSVRLTLWGKQAETFQADDQ----------- 362
Query: 417 FPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKN-------TQSV 469
P++A K +V DF G+ + S + I PD PEAH L+ WF+ EG + T SV
Sbjct: 363 -PVIAFKGVKVGDFGGRSLSMFSNATMTINPDIPEAHSLRGWFDAEGHSKHFAAYTTASV 421
Query: 470 ---SISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIM 526
+I+ + + R KT++Q+KDE LG EK D+ + AT+ +IK D F Y AC
Sbjct: 422 GDSAINTATSAAARPAELKTIAQVKDEQLGMSEKTDFFSTEATVAFIKKDPFSYPACA-- 479
Query: 527 IGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM 586
C KKV+ +G G W C++C + E +RYIL + D+TG W+TAF E AE+IM
Sbjct: 480 -NPDNCAKKVVEDGSG-WWCEKCQRRWDEPIHRYILSMNVMDYTGQFWMTAFNETAEQIM 537
Query: 587 GMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYN 646
G+SA DL LK + ND + AT Y+F++ K+++F+D+ RV+ K +
Sbjct: 538 GISANDLMKLKN-EGNDLDYDAHFAKATARTYVFQMMAKQDSFNDQVRVRYQCRKVAPPD 596
Query: 647 YSSETRFILDLMDKL 661
Y +++ + ++ ++
Sbjct: 597 YVADSAHLSQMISEM 611
>gi|281342356|gb|EFB17940.1| hypothetical protein PANDA_006470 [Ailuropoda melanoleuca]
Length = 563
Score = 334 bits (856), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 208/619 (33%), Positives = 323/619 (52%), Gaps = 72/619 (11%)
Query: 41 MLATQRNELVTSGLLQIGSVVRLTKFTCNVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQ 99
MLATQ N LV L + ++ +F N +++ R +VI+M+LD++
Sbjct: 4 MLATQLNPLVEEEQLSSNCICQINRFIVNTLKDGRRVVILMELDIL-------------- 49
Query: 100 RPSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPE 159
S E G GNP G H +V P + PA KP+
Sbjct: 50 --KSAEAVGLKIGNPVPYNEG-----HGQQQVVPSPVSAASAPAN------------KPQ 90
Query: 160 VGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRI 219
GS + + ++ F + ++ A + G ++V ++
Sbjct: 91 QQNGSSAMGSTTSKTYGASKTFGKAGGTSLANS-----------------AGGTQV--KV 131
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
+PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D + GEIR T FN D
Sbjct: 132 VPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNEQVD 190
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
+F+ ++ K+Y +S+G LK A K F + ND E+ + + V C ED +P QF F
Sbjct: 191 KFFPLIDMNKVYYISKGILKIANKQFTAVKNDYEMTFNNETSVMPC-EDGHHLPTVQFDF 249
Query: 340 RPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
I D+E +S++D+IG+ SY T ++ N E KR ++L DMSG+ V TLWG
Sbjct: 250 TGIGDLENKPKDSLIDIIGICKSYEDATKITVKSNNREVSKRNIYLMDMSGKVVTATLWG 309
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEW 458
+D R D P++A+K RVSDF G+ + +S++ + + PD PEA++L+ W
Sbjct: 310 ----EDADRF----DGSRQPVMAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYKLRGW 361
Query: 459 FEKEGKNTQSVSIS--RDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCD 516
F+ EG+ VSIS + + G KT+ ++K E LG +K D+ + AT+VY++ +
Sbjct: 362 FDSEGQALDGVSISDLKSGGTGGSNTNWKTLYEVKSENLGHGDKADYFSSVATVVYLRKE 421
Query: 517 NFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVT 576
N Y ACP + CNKKV++ +G + C++CD YR IL I D WVT
Sbjct: 422 NCMYQACPT----QDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQENQWVT 477
Query: 577 AFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVK 636
FQE AE I+G S L LK D+N++ F E+ +NA F + F+++VK ET++DE R+K
Sbjct: 478 CFQESAEAIIGQSTSYLGELK--DKNEQAFEEIFQNANFRSFTFRIRVKLETYNDESRIK 535
Query: 637 STVVKAERYNYSSETRFIL 655
+TV+ + +Y R ++
Sbjct: 536 ATVMDVKPVDYREYGRRLI 554
>gi|149724785|ref|XP_001504393.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit [Equus
caballus]
Length = 603
Score = 333 bits (855), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 222/662 (33%), Positives = 343/662 (51%), Gaps = 85/662 (12%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQV++++ + + + R+R+++SDG + MLATQ N LV L +
Sbjct: 10 PILQVINIRPITTG------NSPPRYRLLMSDGLNTLSSFMLATQLNPLVEEERLSSNCI 63
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
++ +F N +++ R +VI+M+L+V+ S E G GNP
Sbjct: 64 CQVNRFIVNTLKDGRRVVILMELEVL----------------KSAEAVGLKIGNPVPYNE 107
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
G H G VP+ S PP S P+P
Sbjct: 108 G-----H---------GQQQVVPSPVSAAS--PPT--------------------SKPQP 131
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRG--LVGKSE-VPSRIIPIAALNPYMGKWTIKA 236
+ +S T Y S + G LV S ++++PIA+L PY KWTI A
Sbjct: 132 QNG---SSGMGSTVSKAYGASKTFGKAGGASLVNSSGGTQAKVVPIASLTPYQSKWTICA 188
Query: 237 RVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG 296
RVT K ++R ++N RG+GK+F +L+D + GEIR T FN AD+F+ ++ K+Y S+G
Sbjct: 189 RVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNEQADKFFPLLDVNKVYYFSKG 247
Query: 297 SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDL 356
+LK A K F + ND E+ + + V C EDD +P QF F I ++E +S+VD+
Sbjct: 248 TLKIANKQFTAVKNDYEMTFNNETSVMPC-EDDHHLPTVQFDFTGIGELENKPKDSLVDI 306
Query: 357 IGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSG 415
IG+ SY T ++ N E KR ++L D SG+ V TLWG +D R D
Sbjct: 307 IGICKSYEDATKITVKSNNREVSKRNIYLMDTSGKVVTTTLWG----EDADRF----DGS 358
Query: 416 VFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSIS--R 473
P++A+K RVSDF G+ + +S++ + + PD EA++L+ WF+ EG+ VSIS +
Sbjct: 359 RQPVMAIKGARVSDFGGRSLSVLSSSTVIMNPDISEAYKLRGWFDSEGQALDGVSISDLK 418
Query: 474 DSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCN 533
+ G KT+ ++K E LG +K D+ + AT+VY++ +N Y ACP + CN
Sbjct: 419 GGGTGGSNTNWKTLYEVKSENLGQGDKADYFSSVATVVYLRKENCMYQACP----SQDCN 474
Query: 534 KKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDL 593
KKV++ +G + C++CD YR IL I D WVT FQE AE I+G + L
Sbjct: 475 KKVIDQQNGLYRCEKCDSEFPSFKYRMILSVNIADFQENQWVTCFQESAEAILGQNTAYL 534
Query: 594 YSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRF 653
LK ++N++ F EV +NA F + F+++VK ETF+DE R+K+TV+ + +Y R
Sbjct: 535 GELK--EKNEQAFEEVFQNANFRSFTFRIRVKLETFNDESRIKATVMDVKPVDYREYGRR 592
Query: 654 IL 655
++
Sbjct: 593 LI 594
>gi|343887032|gb|AEM65192.1| replication protein A 70kDa DNA-binding subunit [Kryptolebias
marmoratus]
Length = 610
Score = 333 bits (855), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 212/621 (34%), Positives = 325/621 (52%), Gaps = 79/621 (12%)
Query: 26 RFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSVVRLTKFTCNVIQN-RMIVIVMDLD 83
RFR+++SDG + ML+TQ N + +L + L N++++ R +VI++++D
Sbjct: 39 RFRVMMSDGRDTLSSFMLSTQLNFMAEENILAPNCICNLKGHVTNILKDGRRVVIILEID 98
Query: 84 VIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVS--LQHHNNTRVSQLPGDTDAV 141
V+ S+NE G + G+P G + LQ + V
Sbjct: 99 VL---------------KSANEVAGRI-GDPTPYFDGQNKGLQQAPAPAPAPA---PAPV 139
Query: 142 PAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSP 201
P R + R E SR Y + + +AP P
Sbjct: 140 PETRPLQQQ--------------------------NRNEVSRGYNRDLVK--KAP----P 167
Query: 202 SMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDL 261
+M G S+++PIA+LNPY KWT++ARVT K +R ++N RGDG++F ++
Sbjct: 168 AMPVTPG------GGSKVVPIASLNPYQSKWTVRARVTNKSSIRTWSNSRGDGRLFSMEI 221
Query: 262 LDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSM 321
+D + GEIRVT FN D+FY +E GK+Y V++GSLK A K + + ND E+ L+ S
Sbjct: 222 VD-ESGEIRVTAFNQEVDKFYSLIEVGKVYYVTKGSLKIANKQYTSVKNDYEMTLNGEST 280
Query: 322 VQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRT 381
+ C ED+ +P Q F PI D+E E +++VD+IGV + L K+ E KRT
Sbjct: 281 IIPC-EDNCDVPMVQCDFIPIADLEKREKDAIVDVIGVCKSVDEVTRLTTKSNREVSKRT 339
Query: 382 LHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTT 441
L+L DMSG+ V + LWG D PI+A+K ++SDF G+ + ++
Sbjct: 340 LNLMDMSGKMVSVILWGEEA--------EKFDGSEQPIVAIKGAKLSDFGGRSISASFSS 391
Query: 442 QLFIEPDFPEAHRLKEWFEKEGKNT--QSVSISRDSLSVGRADIRKTVSQIKDEGLGTKE 499
L I PD PEA++++ WF+ EG QS++ R + +G I KT+S++K E LG +
Sbjct: 392 TLMINPDIPEAYKIRGWFDNEGHTVVGQSLTERRGTGIIGGIHIWKTLSEVKAEHLGHGD 451
Query: 500 KPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYR 559
+ D+ + +ATIVY++ +N Y ACP + CNKKV+ +G + C++CD+ YR
Sbjct: 452 EADYFSCTATIVYLRKENCLYQACP----SQDCNKKVIGQQNGMFRCEKCDKEFPNFKYR 507
Query: 560 YILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYL 619
IL I D+ WVT FQE AE I+G +A L LK+ N+ F EV + A F +
Sbjct: 508 LILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKH--SNESAFDEVFQKANFNTLI 565
Query: 620 FKLKVKEETFSDEQRVKSTVV 640
F +VK ET++DE R+K+ V+
Sbjct: 566 FHNRVKLETYNDESRIKAPVL 586
>gi|403275301|ref|XP_003929392.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit
[Saimiri boliviensis boliviensis]
Length = 560
Score = 333 bits (855), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 183/469 (39%), Positives = 273/469 (58%), Gaps = 31/469 (6%)
Query: 201 PSMYANRGLVGKSEVPS----------RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQ 250
P Y GK+ PS +++PIA+L PY KWTI ARVT K ++R ++N
Sbjct: 100 PKAYGASKTFGKAGGPSLSSTSGGTQAKVVPIASLTPYQSKWTICARVTNKSQIRTWSNS 159
Query: 251 RGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHN 310
RG+GK+F +L+D + GEIR T FN D+F+ +E K+Y S+G+LK A K F + N
Sbjct: 160 RGEGKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKN 218
Query: 311 DLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVV-SYISPTASL 369
D E+ + + V C EDD +P QF F I+D+E +S+VD+IG+ SY
Sbjct: 219 DYEMTFNNETSVMPC-EDDHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDAIKIT 277
Query: 370 MRKNGTETQKRTLHLRDMSGRSVELTLWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVS 428
+R N E KR ++L D SG+ V TLWG + DG R P+LA+K RVS
Sbjct: 278 VRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQ---------PVLAIKGARVS 328
Query: 429 DFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISR-DSLSVGRADIR-KT 486
DF G+ + +S++ + + PD PEA++L+ WF+ EG+ VSIS S +G ++ KT
Sbjct: 329 DFGGRSLSVLSSSTIILNPDIPEAYKLRGWFDSEGQALDGVSISDLKSGGLGGSNTNWKT 388
Query: 487 VSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHC 546
+ ++K E LG +KPD+ + AT+VY++ +N Y ACP + CNKKV++ +G + C
Sbjct: 389 LYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPT----QDCNKKVIDQQNGLYRC 444
Query: 547 DRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKF 606
++CD YR IL I D WVT FQE AE I+G +A L LK D+N++ F
Sbjct: 445 EKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELK--DKNEQAF 502
Query: 607 GEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
EV +NA F ++F+++VK ET++DE R+K+TV+ + +Y R ++
Sbjct: 503 EEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLV 551
>gi|197098316|ref|NP_001126290.1| replication protein A 70 kDa DNA-binding subunit [Pongo abelii]
gi|75054872|sp|Q5R7Q4.1|RFA1_PONAB RecName: Full=Replication protein A 70 kDa DNA-binding subunit;
Short=RP-A p70; AltName: Full=Replication factor A
protein 1; Short=RF-A protein 1
gi|55730978|emb|CAH92206.1| hypothetical protein [Pongo abelii]
Length = 616
Score = 333 bits (855), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 179/443 (40%), Positives = 265/443 (59%), Gaps = 21/443 (4%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
S+++PIA+L PY KWTI ARVT K ++R ++N RG+ K+F +L+D + GEIR T FN
Sbjct: 182 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEEKLFSLELVD-ESGEIRATAFNE 240
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
D+F+ +E K+Y S+G+LK A K F + ND E+ + + V C EDD +P Q
Sbjct: 241 QVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC-EDDHHLPTVQ 299
Query: 337 FHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F I+D+E +S+VD+IG+ SY T +R N E KR ++L D SG+ V T
Sbjct: 300 FDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTAT 359
Query: 396 LWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
LWG + DG R P+LA+K RVSDF G+ + +S++ + PD PEA++
Sbjct: 360 LWGEDADKFDGSRQ---------PVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYK 410
Query: 455 LKEWFEKEGKNTQSVSISR-DSLSVGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVY 512
L+ WF+ EG+ VSIS S VG + KT+ ++K E LG +KPD+ + AT+VY
Sbjct: 411 LRGWFDAEGQALDGVSISDLKSGGVGGGNTNWKTLYEVKSENLGQGDKPDYFSSVATVVY 470
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
++ +N Y ACP + CNKKV++ +G + C++CD YR IL I D
Sbjct: 471 LRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQEN 526
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
WVT FQE AE I+G +A L LK D+N++ F EV +NA F ++F+++VK ET++DE
Sbjct: 527 QWVTCFQESAEAILGQNAAYLGELK--DKNEQAFEEVFQNANFRSFIFRVRVKVETYNDE 584
Query: 633 QRVKSTVVKAERYNYSSETRFIL 655
R+K+TV+ + +Y R ++
Sbjct: 585 SRIKATVMDVKPVDYREYGRRLV 607
>gi|74214510|dbj|BAE31105.1| unnamed protein product [Mus musculus]
Length = 644
Score = 333 bits (854), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 225/683 (32%), Positives = 351/683 (51%), Gaps = 97/683 (14%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQV++++ + + ++ R+R+++SDG + MLATQ N LV G L V
Sbjct: 23 PILQVINIRPISTG------NRSPRYRLLMSDGLNTLSSFMLATQLNTLVEGGQLASNCV 76
Query: 61 VRLTKFTCNVIQN-RM---------------------IVIVMDLDVIIDKCDPIGKPVPA 98
++ KF N +++ RM +V++MDL+V+
Sbjct: 77 CQVHKFIVNTLKDGRMQPKPHGNPYGEQSVLRKLSQKVVVLMDLEVM------------- 123
Query: 99 QRPSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKP 158
S E G GNP G + + Q AVP+ S P KP
Sbjct: 124 ---KSAEDVGLKIGNPMPYNEG-----YGQQQQQQQQQQQQAVPSP---ASAATPPASKP 172
Query: 159 EVGAGS-GSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSE-VP 216
+ GS G S + ++ +P F +P A GL+ S
Sbjct: 173 QPQNGSLGMGSTAAKAYGASKP-FGKP--------------------AGTGLLQPSGGTQ 211
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
S+++PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D + GEIR T FN
Sbjct: 212 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNE 270
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
D+F+ +E K+Y S+G+LK A K F+ + ND E+ + + V C ED +P Q
Sbjct: 271 QVDKFFPLIEVNKVYYFSKGALKIANKQFSAVKNDYEMTFNNETSVLPC-EDGHHLPTVQ 329
Query: 337 FHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F I D+E +++VD+IG+ SY ++ N E KR ++L DMSG+ V T
Sbjct: 330 FDFTGIGDLESKAKDALVDIIGICKSYEDSIKITVKSNNREVAKRNIYLMDMSGKVVTTT 389
Query: 396 LWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
LWG + DG R P++A+K RVSDF G+ + +S++ + + PD PEA++
Sbjct: 390 LWGEDADKFDGSRQ---------PVMAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYK 440
Query: 455 LKEWFEKEGKNTQSVSIS--RDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVY 512
L+ WF+ EG+ VSIS R + G KT+ + K E LG +K D+ + A +V+
Sbjct: 441 LRGWFDSEGQALDGVSISDHRSGGAGGGNTNWKTLHEAKSENLGQGDKADYFSTVAAVVF 500
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
++ +N Y ACP + CNKKV++ +G + C++CD+ YR IL I D
Sbjct: 501 LRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSANIADFQEN 556
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
WVT FQE AE I+G + L LK ++N++ F EV +NA F + F+++VK ET++DE
Sbjct: 557 QWVTCFQESAEAILGQNTMYLGELK--EKNEQAFEEVFQNANFRSFTFRIRVKLETYNDE 614
Query: 633 QRVKSTVVKAERYNYSSETRFIL 655
R+K+TV+ + ++ R ++
Sbjct: 615 SRIKATVMDVKPVDFRDYGRRLI 637
>gi|384246948|gb|EIE20436.1| replication factor-a protein [Coccomyxa subellipsoidea C-169]
Length = 630
Score = 333 bits (854), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 176/454 (38%), Positives = 272/454 (59%), Gaps = 19/454 (4%)
Query: 204 YANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQ------RGDGKVF 257
Y G + ++E P RI+PI++LN Y WTIKAR+T K E+R Y+N GK+F
Sbjct: 180 YKGHGPIARNEAPPRIVPISSLNSYQSHWTIKARITNKSEIRRYSNAPKCAWCMHAGKLF 239
Query: 258 HFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKN--FNHLHNDLEIF 315
F+LLD+ GGEIR FN D+F ++ G + ++S+ SLK + FN+ +D EI
Sbjct: 240 SFELLDAQGGEIRGCGFNQCVDKFEPIMQQGAVIMMSKASLKNKKPGSAFNNTRHDYEIT 299
Query: 316 LDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGT 375
L+ +++++C ED+ +IP+ Q+HF + ++ N VD+IG+V + P+A + + G
Sbjct: 300 LEPNTVIEVCEEDERAIPKMQYHFIKVKELNDKFANETVDIIGIVDKVDPSAVIQTREGK 359
Query: 376 ETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVV 435
E KR + +RD SG SVE+TLWG + ++ G +L+ + + GV +LA+K ++ D+NG+ +
Sbjct: 360 ELMKRNISIRDDSGASVEITLWGTYSSEPGDQLEEVFNGGVHSVLALKNAKIGDYNGRTL 419
Query: 436 GTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSI----SRDSLSVGRADIRKTVSQIK 491
T+STT L ++PD PEA L+ WF+ G VS S S+ G+ D R T++ IK
Sbjct: 420 STVSTTTLTVDPDVPEAGHLRHWFDSAGGAAAPVSALTSGSGASVGGGKGDRRVTLATIK 479
Query: 492 DEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDG----RWHCD 547
+E LGT W+ + TI ++K D Y AC + + CNKKV ++G G RW C+
Sbjct: 480 EEALGTNSTNAWVQIVCTITFVKSDPIAYPACTLQYNGKQCNKKVTDSGGGDGPNRWWCE 539
Query: 548 RCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFG 607
RC + E +YRY+L I+DH+G WVTAFQE ++I+G +A ++ LK + F
Sbjct: 540 RC-SAACEAEYRYMLNLNIEDHSGKEWVTAFQEEGKQIIGYTANEMQELK--EAESPLFE 596
Query: 608 EVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVK 641
+ + YLFKLKV E+T+ DEQR++ VV+
Sbjct: 597 ARLNDVKCRSYLFKLKVSEDTWQDEQRIRINVVR 630
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 52/81 (64%), Gaps = 5/81 (6%)
Query: 3 VLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVR 62
V+Q++ +K V +K +Q+H R+ LSDG + ATQ ++LVT+ ++ +GSV+R
Sbjct: 26 VVQIIGVKPVPNKGDGKQRH-----RLALSDGQHWITAIPATQLDDLVTNQVVVVGSVIR 80
Query: 63 LTKFTCNVIQNRMIVIVMDLD 83
L ++ N + NR ++I++ LD
Sbjct: 81 LEEYLFNNVNNRQVLILLQLD 101
>gi|198416884|ref|XP_002127939.1| PREDICTED: similar to MGC107891 protein [Ciona intestinalis]
Length = 607
Score = 333 bits (854), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 217/670 (32%), Positives = 342/670 (51%), Gaps = 99/670 (14%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRS-QQGMLATQRNELVTSGLLQIGSV 60
PVLQ + K V Q +R ++ LSDG S ML T N LV G+L S+
Sbjct: 24 PVLQCLSFKKV-------QGPNIERIKLALSDGVHSFGTVMLGTNLNHLVNDGILDANSI 76
Query: 61 VRLTKFTC-NVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNA 118
VRLT + ++QN + ++I + LDV+ S + G GNP + A
Sbjct: 77 VRLTHYQSPKMVQNGKKVIICLSLDVV----------------QSGNEVGERIGNPVNYA 120
Query: 119 TGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPR 178
+ N+ R Q NL PN + A +P+
Sbjct: 121 QASA----NDGRAVQ--------------NENLKPNQNRMPASA-----------MQSPK 151
Query: 179 PEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARV 238
P + P P G ++ +R++PI +L PY KW I+ARV
Sbjct: 152 PTGKMSFGGK-GDAPTTP--------------GGTQ--TRVMPIGSLTPYQNKWAIRARV 194
Query: 239 TAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSL 298
T KG +R + N RG+GK+F F +LD D G+I+VTCF AD+F+ VE GK++ ++ +L
Sbjct: 195 TQKGAMREWKNARGEGKLFSFTVLD-DSGDIKVTCFKEEADKFFSMVEVGKVFCIANATL 253
Query: 299 KPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDAS-IPRQQFHFRPINDVEGMENNSVVDLI 357
KPA +N +D E+ L +++ L +DDA +P+ Q++F+ I+++ G N++VD I
Sbjct: 254 KPANPQYNSTTHDYEMTLRRDTVITLSEDDDAKLVPKIQYNFKKISEL-GNHVNTLVDTI 312
Query: 358 GVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWG----NFCNDDGLRLQHMC 412
G++ +S+M R E + R ++L D S +++TLWG F +++
Sbjct: 313 GILKSAEDLSSVMIRSQNREAKVRKINLVDESNAEIQVTLWGQEAEKFTSEES------- 365
Query: 413 DSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSIS 472
++ +K+ +VSDF G + TI +T + I PD PEA LK+W+E GK+ + ++
Sbjct: 366 -----AVVVLKSAKVSDFGGCSMSTIGSTTVTINPDIPEAFSLKQWYETGGKSQATQVLT 420
Query: 473 RDSLSVGR-ADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRP 531
S G A KT++ IK E LGTKEKPD+ITV AT++Y K +N Y ACP +
Sbjct: 421 TGSGGGGNMAANWKTLADIKTENLGTKEKPDYITVKATVLYCKKENILYQACP----NDQ 476
Query: 532 CNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAK 591
CNKKV++ +G + C++C+ YR IL + D TWVT FQ+ AE ++ M+A+
Sbjct: 477 CNKKVVDLQNGSYRCEKCNSESPNFKYRVILNMHMADEFDSTWVTCFQDQAEILLNMTAQ 536
Query: 592 DLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSET 651
L LK D N++++ +++ F Y FKL+VK + F+DE+R + T++ +
Sbjct: 537 QLGDLK--DTNEQEYEAALKSVDFKSYFFKLRVKSDKFNDEERTRVTIMNVSPMSNVDYI 594
Query: 652 RFILDLMDKL 661
+ + +DKL
Sbjct: 595 KKLTTDIDKL 604
>gi|440912313|gb|ELR61897.1| Replication protein A 70 kDa DNA-binding subunit [Bos grunniens
mutus]
Length = 616
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 173/442 (39%), Positives = 265/442 (59%), Gaps = 19/442 (4%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
++++PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D + GEIR T FN
Sbjct: 182 AKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNE 240
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
AD+F+ ++ K+Y S+G+LK A K F + ND E+ + + V C ED +P Q
Sbjct: 241 QADKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC-EDGHHLPTVQ 299
Query: 337 FHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F I D+E +S+VD+IG+ +Y T +++ N E KR ++L DMSG+ V T
Sbjct: 300 FDFTGIGDLESKSKDSLVDIIGICKNYEDVTKIIVKSNNREVSKRNIYLMDMSGKVVNAT 359
Query: 396 LWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRL 455
LWG DD + D P++A+K RVSDF G+ + +S++ + + PD PEA++L
Sbjct: 360 LWG----DDADKF----DGSRQPVMAIKGARVSDFGGRSLSVLSSSTIIVNPDIPEAYKL 411
Query: 456 KEWFEKEGKNTQSVSIS--RDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYI 513
+ WF+ EG+ +SIS + + G KT+ ++K E LG +KPD+ + AT+VY+
Sbjct: 412 RGWFDSEGQALDGISISDLKSGGAGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYL 471
Query: 514 KCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLT 573
+ +N Y ACP + CNKKV++ +G + C++CD YR IL I D
Sbjct: 472 RKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQENQ 527
Query: 574 WVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQ 633
WVT FQE AE I+G S L LK ++N++ F EV +NA F + F+++VK ET++DE
Sbjct: 528 WVTCFQESAEAILGQSTAYLGELK--EKNEQAFEEVFQNANFRSFTFRIRVKLETYNDES 585
Query: 634 RVKSTVVKAERYNYSSETRFIL 655
R+K+TVV + +Y R ++
Sbjct: 586 RIKATVVDVKPVDYREYGRRLV 607
>gi|255982530|ref|NP_001157695.1| replication protein A 70 kDa DNA-binding subunit isoform 1 [Mus
musculus]
Length = 644
Score = 332 bits (852), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 225/683 (32%), Positives = 351/683 (51%), Gaps = 97/683 (14%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQV++++ + + ++ R+R+++SDG + MLATQ N LV G L V
Sbjct: 23 PILQVINIRPISTG------NRSPRYRLLMSDGLNTLSSFMLATQLNTLVEGGQLASNCV 76
Query: 61 VRLTKFTCNVIQN-RM---------------------IVIVMDLDVIIDKCDPIGKPVPA 98
++ KF N +++ RM +V++MDL+V+
Sbjct: 77 CQVHKFIVNTLKDGRMQPKPHGNPYGEQSVLRKLSQKVVVLMDLEVM------------- 123
Query: 99 QRPSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKP 158
S E G GNP G + + Q AVP+ S P KP
Sbjct: 124 ---KSAEDVGLKIGNPVPYNEG-----YGQQQQQQQQQQQQAVPSP---ASAATPPASKP 172
Query: 159 EVGAGS-GSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSE-VP 216
+ GS G S + ++ +P F +P A GL+ S
Sbjct: 173 QPQNGSLGMGSTAAKAYGASKP-FGKP--------------------AGTGLLQPSGGTQ 211
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
S+++PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D + GEIR T FN
Sbjct: 212 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNE 270
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
D+F+ +E K+Y S+G+LK A K F+ + ND E+ + + V C ED +P Q
Sbjct: 271 QVDKFFPLIEVNKVYYFSKGALKIANKQFSAVKNDYEMTFNNETSVLPC-EDGHHLPTVQ 329
Query: 337 FHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F I D+E +++VD+IG+ SY ++ N E KR ++L DMSG+ V T
Sbjct: 330 FDFTGIGDLESKAKDALVDIIGICKSYEDSIKITVKSNNREVAKRNIYLMDMSGKVVTTT 389
Query: 396 LWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
LWG + DG R P++A+K RVSDF G+ + +S++ + + PD PEA++
Sbjct: 390 LWGEDADKFDGSRQ---------PVMAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYK 440
Query: 455 LKEWFEKEGKNTQSVSIS--RDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVY 512
L+ WF+ EG+ VSIS R + G KT+ + K E LG +K D+ + A +V+
Sbjct: 441 LRGWFDSEGQALDGVSISDHRSGGAGGGNTNWKTLHEAKSENLGQGDKADYFSTVAAVVF 500
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
++ +N Y ACP + CNKKV++ +G + C++CD+ YR IL I D
Sbjct: 501 LRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSANIADFQEN 556
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
WVT FQE AE I+G + L LK ++N++ F EV +NA F + F+++VK ET++DE
Sbjct: 557 QWVTCFQESAEAILGQNTMYLGELK--EKNEQAFEEVFQNANFRSFTFRIRVKLETYNDE 614
Query: 633 QRVKSTVVKAERYNYSSETRFIL 655
R+K+TV+ + ++ R ++
Sbjct: 615 SRIKATVMDVKPVDFRDYGRRLI 637
>gi|321257561|ref|XP_003193631.1| damaged DNA binding protein [Cryptococcus gattii WM276]
gi|317460101|gb|ADV21844.1| Damaged DNA binding protein, putative [Cryptococcus gattii WM276]
Length = 598
Score = 332 bits (852), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 221/675 (32%), Positives = 338/675 (50%), Gaps = 120/675 (17%)
Query: 3 VLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVR 62
V+QV+++K + S R+R +LSDG Q MLATQ N V S + S+V+
Sbjct: 26 VVQVLNVKKIASTDTTAVD----RYRAILSDGQYFIQAMLATQLNHFVESKQVDKHSLVK 81
Query: 63 LTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVS 122
+ F+ N + R ++I++ L+V+ P ++E+ GNP
Sbjct: 82 VVNFSVNSVSGRKLLIILALEVV---------------PWTDEK----IGNP-------- 114
Query: 123 LQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFS 182
VS T A +A+ G+N P+ QSA+ S
Sbjct: 115 --------VSVDQAKTGASASAQPAGANSAPH---------------QSAT--------S 143
Query: 183 RPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKG 242
P ++ QAP +PS A G + PI L+PY +WTIKARVT K
Sbjct: 144 APASAR----GQAPARNAPS--ARSGNTKPKGDLGPLYPIEGLSPYQNRWTIKARVTQKS 197
Query: 243 ELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
++RHY+NQRGDGK+F+ +D + GEIR T FN D FY+ +E GK++ VSR + A+
Sbjct: 198 DIRHYSNQRGDGKLFNVTFMD-ETGEIRATGFNDAVDNFYNLLEVGKVFFVSRARINIAK 256
Query: 303 KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSY 362
K F++++N+ EI + + ++ C D S+P+ ++ F+ I D+ ++ + V D+IGVV
Sbjct: 257 KQFSNVNNEYEIMFERDTEIEPCA--DESVPQVKYSFKGIGDLGELQKDDVCDVIGVVR- 313
Query: 363 ISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG----NFCNDDGLRLQHMCDSGVFP 418
E KR L L D SG+SV LTLWG F DD P
Sbjct: 314 -------------EFAKRDLQLVDQSGQSVRLTLWGKQAETFQADDQ------------P 348
Query: 419 ILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSV 478
++A K +V DF G+ + S + I PD PEAH L+ WF+ EG N + + + SV
Sbjct: 349 VIAFKGVKVGDFGGRSLSMFSNATMTINPDIPEAHSLRGWFDAEGHNKHFTAYT--NASV 406
Query: 479 GRADIR------------KTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIM 526
G + + KT++Q KDE LG EK D+ + AT+ +IK D F Y AC
Sbjct: 407 GDSAVNTAAGAGTRPAELKTIAQAKDEQLGMSEKTDFFSTEATVAFIKKDPFSYPACA-- 464
Query: 527 IGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM 586
C KKV+ +G G W C++C + E +RYIL + D+TG W+TAF E AE+IM
Sbjct: 465 -NPDNCAKKVVEDGSG-WWCEKCQRRWDEPIHRYILSLNVMDYTGQFWMTAFNETAEQIM 522
Query: 587 GMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYN 646
+SA DL LK + ND + AT Y+F++ K+++F+D+ RV+ K +
Sbjct: 523 SISANDLMKLKN-EGNDLDYDAHFAKATARTYVFQMMAKQDSFNDQVRVRYQCRKVATPD 581
Query: 647 YSSETRFILDLMDKL 661
Y +++ ++ ++ ++
Sbjct: 582 YVADSAYLSQMISQM 596
>gi|398396686|ref|XP_003851801.1| hypothetical protein MYCGRDRAFT_109907 [Zymoseptoria tritici
IPO323]
gi|339471681|gb|EGP86777.1| hypothetical protein MYCGRDRAFT_109907 [Zymoseptoria tritici
IPO323]
Length = 646
Score = 332 bits (851), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 214/678 (31%), Positives = 356/678 (52%), Gaps = 92/678 (13%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++Q + +K + + Q Q+ R+R+V +D QGMLATQ N L+ G L+ GS+
Sbjct: 51 PIVQCVQIKPMSANQATGQE----RWRVVFNDSINFIQGMLATQSNNLINDGTLKRGSIC 106
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDP--IGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
RLT+FT N ++++ I+IV+DL+V+ + +P IG QP ++T +
Sbjct: 107 RLTQFTANFVKDKHILIVVDLEVLKEYGEPEKIG------------QPVAITYD------ 148
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
G + + V PG+ AG+G + N+ SN
Sbjct: 149 GAKPEQQED--VKPQPGNI-----------------------AGNGFYGNKPQQQSNSEL 183
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVT 239
+RP A+ + RG I PI A++PY KWTIKAR T
Sbjct: 184 S-ARPKAT--------------VSHNGRG---------NITPIEAVSPYTHKWTIKARCT 219
Query: 240 AKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG-SL 298
KG+++ ++N+ G+GK+F + LD D GEIR T FN DQ+Y + G +Y +S +
Sbjct: 220 HKGDIKTWHNKNGEGKLFSVNFLD-DSGEIRATGFNDSVDQWYEFLTEGNVYYISSPCKV 278
Query: 299 KPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIG 358
+ A+K F++++ND E+ + + V+ ED +P+ +++F I ++ ++ ++ +D IG
Sbjct: 279 QLAKKQFSNVNNDYELTFERDTTVEKA-EDHDGVPQVRYNFTDIAALQNVDKDTTIDCIG 337
Query: 359 VVSYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVF 417
V+ + ++ K+ + KR L L D SG +V LT+WG + D+
Sbjct: 338 VLQEVGEVNEIVSKSTNKPYSKRELTLVDNSGYNVRLTVWG--------KTAESFDARPE 389
Query: 418 PILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRD--- 474
++A K +VSDF G+ + +S+ + I+PD EA++LK W++ EG+N S +
Sbjct: 390 SVVAFKGVKVSDFGGRSLSLLSSGSMNIDPDIDEAYKLKGWYDGEGRNGNFASHANSMAA 449
Query: 475 --SLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPC 532
+ S GR KT++Q+ D+ G E DW ++ ATIVY+K D+F Y AC +PC
Sbjct: 450 AGATSGGRPSDFKTIAQVYDDKDGQSETTDWFSIKATIVYVKQDSFAYPACRTT-DPKPC 508
Query: 533 NKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKD 592
NKKV + +G+W C++C + +YRYI+ + DHTG W++ F E ++MGMSA D
Sbjct: 509 NKKVTEHDEGQWRCEQCQMTWDRPNYRYIMSVNVSDHTGQIWLSCFDEVGVQVMGMSAND 568
Query: 593 LYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETR 652
L +LK + +D++ GE +A ++FK K K +TF D+QRV+ V +Y+ E +
Sbjct: 569 LMALKE-EGDDKRVGEAFSDANCKSFIFKCKAKMDTFQDQQRVRYQVQYVNPIDYAREAK 627
Query: 653 FILDLMDKLKSGDSTSFA 670
+ D++ + D++ F
Sbjct: 628 KLADIIKQYSIQDNSMFV 645
>gi|432889884|ref|XP_004075379.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Oryzias latipes]
Length = 598
Score = 331 bits (849), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 192/535 (35%), Positives = 294/535 (54%), Gaps = 31/535 (5%)
Query: 138 TDAVPAARHVGSNLPPNYFKP--EVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQA 195
T+ + R V L KP EVG G ++ + S+P + R P
Sbjct: 82 TNVLKDGRRVVIILEIEVIKPAGEVGGKLGD----PVPYNEAQKGVSQPAPAQENRLPLQ 137
Query: 196 PYMQSPSMYANRGLVGKSEVP--------SRIIPIAALNPYMGKWTIKARVTAKGELRHY 247
P + NR K+ + S+++PIA+LNPY KWTI+ARVT K +R +
Sbjct: 138 PQNKIEVKSFNRDFGKKAPLAMPSTPGGSSKVVPIASLNPYQSKWTIRARVTNKSGIRTW 197
Query: 248 NNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNH 307
+N RGDGK+F +L+D + GEIRVT FN D+F+ +E GK+Y +S+GSLK A K +
Sbjct: 198 SNSRGDGKLFSMELVD-ESGEIRVTGFNQEVDKFFSLIEVGKVYYISKGSLKIANKQYTS 256
Query: 308 LHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTA 367
+ ND E+ L+ S + C E+ +P Q F PI D+E + +++VD+IGV +
Sbjct: 257 VKNDYEMTLNGESTILPC-EESGDVPMMQCDFVPIGDLESRDKDAIVDVIGVCKSVDEVT 315
Query: 368 SLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRV 427
L K E KR+L L DMSG+ V +TLWG D PI+A+K ++
Sbjct: 316 RLTTKTNREVSKRSLSLMDMSGKLVTVTLWGEEA--------EKFDGSGQPIVAIKGAKL 367
Query: 428 SDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISR-DSLSVGRADIRKT 486
SDF G+ + ++ L I PD PEA++L+ W++K+G + S++ S G + KT
Sbjct: 368 SDFGGRSLSASFSSTLMINPDIPEAYKLRGWYDKDGHAVEGQSLTELKGGSGGGSTNWKT 427
Query: 487 VSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHC 546
+S +K+E LG EK D+ + AT+VY++ +N Y ACP ++ CNKKV++ +G + C
Sbjct: 428 LSDLKNEHLGHGEKADYYSCIATVVYLRKENCLYQACP----NQDCNKKVIDQHNGMFRC 483
Query: 547 DRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKF 606
++CD+ YR IL I D+ WVT FQE AE I+G +A L LK D N+ F
Sbjct: 484 EKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLK--DSNESAF 541
Query: 607 GEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
EV + A F ++F+ +VK ET++DE R+K+TV+ + ++ + ++ + KL
Sbjct: 542 DEVFQQANFKTFVFRNRVKLETYNDESRIKATVMDLKPVDHKDYIKSLIVNIRKL 596
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 16/135 (11%)
Query: 26 RFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSVVRLTKFTCNVIQN-RMIVIVMDLD 83
RFR+++SDG + ML+TQ N + +L V L + NV+++ R +VI+++++
Sbjct: 39 RFRVMMSDGRHTLSSFMLSTQLNCMAEENILAQNCVCLLKRHVTNVLKDGRRVVIILEIE 98
Query: 84 VIIDKCD---PIGKPVP---AQRPSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLP-- 135
VI + +G PVP AQ+ S P P + ++ N + P
Sbjct: 99 VIKPAGEVGGKLGDPVPYNEAQKGVSQPAPAQENRLPLQPQNKIEVKSFNRDFGKKAPLA 158
Query: 136 ------GDTDAVPAA 144
G + VP A
Sbjct: 159 MPSTPGGSSKVVPIA 173
>gi|431891029|gb|ELK01908.1| Replication protein A 70 kDa DNA-binding subunit [Pteropus alecto]
Length = 599
Score = 331 bits (848), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 213/637 (33%), Positives = 328/637 (51%), Gaps = 77/637 (12%)
Query: 26 RFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSVVRLTKFTCNVIQN-RMIVIVMDLD 83
R+R+++SDG + MLATQ N LV L + ++ +F N +++ R ++I+M+L
Sbjct: 24 RYRLLMSDGLNTLSSFMLATQLNTLVEDEQLSSNCICQINRFIVNTLKDGRRVIILMELS 83
Query: 84 VIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPA 143
++ S E G GNP G G VP+
Sbjct: 84 IL----------------KSAEAVGLKIGNPVPYNEG--------------HGQQQVVPS 113
Query: 144 ARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSM 203
S PP + SG S S +F + F R ++ +
Sbjct: 114 PVSAAS--PPTSKPQQQNGSSGVGSTVSKAFGASKT-FGRAGGTSLVNSSGG-------- 162
Query: 204 YANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLD 263
++++PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D
Sbjct: 163 -----------TQAKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD 211
Query: 264 SDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQ 323
+ GEIR T FN D+F+ ++ K+Y S+G+LK A K F + ND E+ + + V
Sbjct: 212 -ESGEIRATAFNEQVDKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVI 270
Query: 324 LCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTL 382
C ED +P QF F I D+E +S+VD+IG+ SY T ++ N E KR +
Sbjct: 271 PC-EDGHHLPTVQFDFTGIGDLESKSKDSLVDIIGICKSYEDATKITVKSNNREVSKRNI 329
Query: 383 HLRDMSGRSVELTLWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTT 441
+L DMSG+ V TLWG + DG R P++A+K RVSDF G+ + +S++
Sbjct: 330 YLMDMSGKVVSATLWGEDADKFDGSRQ---------PVMAIKGARVSDFGGRSLSILSSS 380
Query: 442 QLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIR---KTVSQIKDEGLGTK 498
+ + PD PEA++L+ WF+ EG+ VSIS D S G A KT+ + K E LG
Sbjct: 381 TIIVNPDIPEAYKLRGWFDSEGQALDGVSIS-DLKSGGIAGSNTNWKTLYEAKSENLGQG 439
Query: 499 EKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDY 558
+K D+ + AT+VY++ +N Y ACP + CNKKV++ +G + C++CD+ Y
Sbjct: 440 DKADYFSSVATVVYLRKENSMYQACPT----QDCNKKVIDQQNGLYRCEKCDREFPNFKY 495
Query: 559 RYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKY 618
R IL I D WVT FQE AE I+G S + LK ++N++ F E+ +NA F +
Sbjct: 496 RMILSVNIADFQENQWVTCFQESAEAILGQSTAYVGELK--EKNEQAFEEIFQNANFRSF 553
Query: 619 LFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
+FK++VK ETF+DE R+K+ V+ + ++ R ++
Sbjct: 554 IFKIRVKLETFNDESRIKAVVMDVKPVDFREYGRRLI 590
>gi|395536318|ref|XP_003770167.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit
[Sarcophilus harrisii]
Length = 607
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 177/445 (39%), Positives = 266/445 (59%), Gaps = 22/445 (4%)
Query: 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAV 277
+++PIA+LNPY KWTI ARVT K ++R ++N RG+GK+F +++D + GEIR T FN
Sbjct: 171 KVVPIASLNPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIEMVD-ESGEIRATAFNDQ 229
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
D+F+ ++ K+Y S+G+LK A K F + ND E+ + + V LC ED +P QF
Sbjct: 230 VDKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVVLC-EDAHHLPTVQF 288
Query: 338 HFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTL 396
F I D+E +S+VD+IGV SY + +++ + E KR +HL D SG+ V TL
Sbjct: 289 DFTVIGDLENKAKDSLVDIIGVCKSYEDASKVVVKSSNREVSKRNIHLMDTSGKVVTTTL 348
Query: 397 WGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRL 455
WG + DG R P+LA+K RVSDF G+ + +S++ + + PD PEA +L
Sbjct: 349 WGEEADRFDGSRQ---------PVLAIKGARVSDFGGRSLSVLSSSTMLVNPDIPEAFKL 399
Query: 456 KEWFEKEGKNTQSVSIS--RDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYI 513
+ WF+ EG+ ++VSIS R + G KT+ +K E LG +K D+ + AT+VY+
Sbjct: 400 RGWFDSEGQALEAVSISDARGGGTGGSNANWKTLYDVKSENLGQGDKADYFSCVATVVYL 459
Query: 514 KCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLT 573
+ +N Y ACP + CNKKV++ +G + C++CD+ YR IL I D
Sbjct: 460 RKENCMYQACP----SQDCNKKVIDQQNGLYRCEKCDREFPSFKYRMILSVNIADFQENQ 515
Query: 574 WVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQ 633
WVT FQE AE I+G + L LK D+N++ F EV +NA F Y FK++VK ET++DE
Sbjct: 516 WVTCFQESAEAILGQNTAYLGELK--DKNEQAFEEVFQNANFRSYTFKIRVKLETYNDES 573
Query: 634 RVKSTVVKAERYNYSSE-TRFILDL 657
R+K++VV + +Y R I+++
Sbjct: 574 RIKASVVDVKPVDYREYGKRLIMNI 598
>gi|240849249|ref|NP_001155361.1| replication protein A 70 kDa DNA-binding subunit [Ovis aries]
gi|238815019|gb|ACR56706.1| replication protein A1 [Ovis aries]
Length = 616
Score = 330 bits (847), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 172/442 (38%), Positives = 264/442 (59%), Gaps = 19/442 (4%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
++++PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D + GEIR T FN
Sbjct: 182 AKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNE 240
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
AD+F+ ++ K+Y S+G+LK A K F + ND E+ + + V C ED +P Q
Sbjct: 241 QADKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC-EDGRHLPTVQ 299
Query: 337 FHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F I D+E +S+VD+IG+ +Y T ++ N E KR ++L DMSG+ V T
Sbjct: 300 FDFTGIGDLESKSKDSLVDIIGICKNYEDVTKITVKSNNREVSKRNIYLMDMSGKVVNAT 359
Query: 396 LWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRL 455
LWG DD + D P++A+K RVSDF G+ + +S++ + + PD PEA++L
Sbjct: 360 LWG----DDADKF----DGSRQPVMAIKGARVSDFGGRSLSVLSSSTIIVNPDIPEAYKL 411
Query: 456 KEWFEKEGKNTQSVSIS--RDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYI 513
+ WF+ EG+ +SIS + + G KT+ ++K E LG +KPD+ + AT+VY+
Sbjct: 412 RGWFDSEGQALDGISISDLKSGGAGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYL 471
Query: 514 KCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLT 573
+ +N Y ACP + CNKKV++ +G + C++CD YR IL I D
Sbjct: 472 RKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQENQ 527
Query: 574 WVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQ 633
WVT FQE AE I+G + L LK ++N++ F EV +NA F + F+++VK ET++DE
Sbjct: 528 WVTCFQESAEAILGQNTAYLGELK--EKNEQAFEEVFQNANFRSFTFRIRVKLETYNDES 585
Query: 634 RVKSTVVKAERYNYSSETRFIL 655
R+K+TVV + +Y R ++
Sbjct: 586 RIKATVVDVKPVDYKEYGRRLV 607
>gi|134110990|ref|XP_775959.1| hypothetical protein CNBD3660 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258625|gb|EAL21312.1| hypothetical protein CNBD3660 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 612
Score = 329 bits (843), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 222/678 (32%), Positives = 337/678 (49%), Gaps = 112/678 (16%)
Query: 3 VLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVR 62
V+QV+++K + S R+R +LSDG Q MLATQ N V S + S+V+
Sbjct: 26 VVQVLNVKKIASTDTTAVD----RYRAILSDGQYFIQAMLATQLNHFVESKQVDKHSLVK 81
Query: 63 LTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQR----PSSNEQPGSVTGNPQSNA 118
+ F+ N + R ++I++ L+V+ + IG PV + S++ QP P +A
Sbjct: 82 VVNFSVNSVSGRKLLIILALEVVPWTDEKIGNPVSVDQAKSGASASAQPAGAHSAPLQSA 141
Query: 119 TGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPR 178
T + +Q+PG R+ S P N KP+ G
Sbjct: 142 TAPAPAR------AQVPG--------RNASSARPGNT-KPKGDLG--------------- 171
Query: 179 PEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARV 238
P P ++ S Y NR WTIKARV
Sbjct: 172 --------------PLYP-IEGLSPYQNR------------------------WTIKARV 192
Query: 239 TAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSL 298
T K ++RHY+NQRGDGK+F+ +D + GEIR T FN D FY+ +E GK++ VSR +
Sbjct: 193 TQKSDIRHYSNQRGDGKLFNVTFMD-ETGEIRATGFNDAVDNFYNLLEVGKVFFVSRARI 251
Query: 299 KPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIG 358
A+K F++++N+ EI + + ++ C D S+P+ +++F+ I D+ ++ + V D+IG
Sbjct: 252 NIAKKQFSNVNNEYEIMFERDTEIEPCA--DESVPQVKYNFKGIGDLGELQKDDVCDVIG 309
Query: 359 VVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWG----NFCNDDGLRLQHMCD 413
VV + S+ R KR L L D SG+SV LTLWG F DD
Sbjct: 310 VVREVGELGSVTSRATNKPFAKRELQLVDQSGQSVRLTLWGKQAETFQADDQ-------- 361
Query: 414 SGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKN-------T 466
P++A K +V DF G+ + S + I PD PEAH L+ WF+ EG N T
Sbjct: 362 ----PVIAFKGVKVGDFGGRSLSMFSNATMTINPDIPEAHSLRGWFDAEGHNKHFTAYTT 417
Query: 467 QSVSISRDSLSVG---RADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTAC 523
SV S + + G R KT++Q+KDE LG EK D+ + AT+ +IK D F Y AC
Sbjct: 418 ASVGDSAINTAAGAATRPAELKTIAQVKDEQLGMSEKTDFFSTEATVAFIKKDPFSYPAC 477
Query: 524 PIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAE 583
C KKV+ +G G W C++C + E +RYIL + D+TG W+TAF E AE
Sbjct: 478 A---NPDNCAKKVVEDGSG-WWCEKCQRRWDEPIHRYILSMNVMDYTGQFWMTAFNETAE 533
Query: 584 EIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAE 643
+IMG+SA DL LK + ND + AT Y+F++ K+++F+D+ RV+ K
Sbjct: 534 QIMGISANDLMKLKN-EGNDLDYDVHFAKATARTYVFQMMAKQDSFNDQVRVRYQCRKVA 592
Query: 644 RYNYSSETRFILDLMDKL 661
+Y +++ + ++ ++
Sbjct: 593 PPDYVADSAHLSQMISQM 610
>gi|58266158|ref|XP_570235.1| damaged DNA binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57226468|gb|AAW42928.1| damaged DNA binding protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 597
Score = 329 bits (843), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 217/674 (32%), Positives = 334/674 (49%), Gaps = 119/674 (17%)
Query: 3 VLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVR 62
V+QV+++K + S R+R +LSDG Q MLATQ N V S + S+V+
Sbjct: 26 VVQVLNVKKIASTDTTAVD----RYRAILSDGQYFIQAMLATQLNHFVESKQVDKHSLVK 81
Query: 63 LTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVS 122
+ F+ N + R ++I++ L+V+ P ++E+ G+ Q+ + +
Sbjct: 82 VVNFSVNSVSGRKLLIILALEVV---------------PWTDEKIGNPVSVDQAKSGASA 126
Query: 123 LQHHNNTRVSQLPGDTDAVPAARHV-GSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEF 181
+ L T PA V G N S+ RP
Sbjct: 127 SAQPAGAHSAPLQSATAPAPARAQVPGRNA-----------------------SSARPGN 163
Query: 182 SRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAK 241
++P +G +G + PI L+PY +WTIKARVT K
Sbjct: 164 TKP----------------------KGDLGP------LYPIEGLSPYQNRWTIKARVTQK 195
Query: 242 GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPA 301
++RHY+NQRGDGK+F+ +D + GEIR T FN D FY+ +E GK++ VSR + A
Sbjct: 196 SDIRHYSNQRGDGKLFNVTFMD-ETGEIRATGFNDAVDNFYNLLEVGKVFFVSRARINIA 254
Query: 302 QKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVS 361
+K F++++N+ EI + + ++ C D S+P+ +++F+ I D+ ++ + V D+IGVV
Sbjct: 255 KKQFSNVNNEYEIMFERDTEIEPCA--DESVPQVKYNFKGIGDLGELQKDDVCDVIGVVR 312
Query: 362 YISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG----NFCNDDGLRLQHMCDSGVF 417
E KR L L D SG+SV LTLWG F DD
Sbjct: 313 --------------EFAKRELQLVDQSGQSVRLTLWGKQAETFQADDQ------------ 346
Query: 418 PILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKN-------TQSVS 470
P++A K +V DF G+ + S + I PD PEAH L+ WF+ EG N T SV
Sbjct: 347 PVIAFKGVKVGDFGGRSLSMFSNATMTINPDIPEAHSLRGWFDAEGHNKHFTAYTTASVG 406
Query: 471 ISRDSLSVG---RADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMI 527
S + + G R KT++Q+KDE LG EK D+ + AT+ +IK D F Y AC
Sbjct: 407 DSAINTAAGAATRPAELKTIAQVKDEQLGMSEKTDFFSTEATVAFIKKDPFSYPACA--- 463
Query: 528 GDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMG 587
C KKV+ +G G W C++C + E +RYIL + D+TG W+TAF E AE+IMG
Sbjct: 464 NPDNCAKKVVEDGSG-WWCEKCQRRWDEPIHRYILSMNVMDYTGQFWMTAFNETAEQIMG 522
Query: 588 MSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNY 647
+SA DL LK + ND + AT Y+F++ K+++F+D+ RV+ K +Y
Sbjct: 523 ISANDLMKLKN-EGNDLDYDVHFAKATARTYVFQMMAKQDSFNDQVRVRYQCRKVAPPDY 581
Query: 648 SSETRFILDLMDKL 661
+++ + ++ ++
Sbjct: 582 VADSAHLSQMISQM 595
>gi|336269529|ref|XP_003349525.1| RFA1 protein [Sordaria macrospora k-hell]
gi|380093400|emb|CCC09058.1| putative RFA1 protein [Sordaria macrospora k-hell]
Length = 610
Score = 328 bits (842), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 211/665 (31%), Positives = 342/665 (51%), Gaps = 93/665 (13%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
+P+LQ + +K + SK +RFR+VLSD Q M+ATQ N LV GLLQ G +
Sbjct: 26 VPILQCLQIKTLDSKNGGA--GATERFRIVLSDLKNYVQCMMATQTNHLVHDGLLQRGCI 83
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATG 120
VRL ++ ++ + I+IV+DL+VI +G P G+PQ
Sbjct: 84 VRLKQYQAQCLKGKNILIVLDLEVI----QSLGCP-------------EKMGDPQPLGPR 126
Query: 121 VSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPE 180
+ HN P +G+ +G + ++ + +P+
Sbjct: 127 GAEPTHN------------------------------PNLGS-TGFYGVKNEQTQDTKPQ 155
Query: 181 FSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTA 240
F R Q+PS + G + + I PI L+P+ KWTIKARVT+
Sbjct: 156 FPR---------------QAPSRNTSGG-----QGSNTIYPIEGLSPFSHKWTIKARVTS 195
Query: 241 KGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG-SLK 299
K +++ ++ G+GK+F + LD + GEIR T FN DQFY ++ G++Y +S ++
Sbjct: 196 KSDIKTWHKPSGEGKLFSVNFLD-ESGEIRATGFNEQVDQFYDLLQEGQVYYISTPCRVQ 254
Query: 300 PAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGV 359
A+K F++L ND E+ + + ++ ED S+P+ +F+F I +++ +E ++ +D+IGV
Sbjct: 255 LAKKQFSNLPNDYELTFERDTQIEKA-EDQTSVPQVRFNFVNIQELQDVEKDATIDVIGV 313
Query: 360 VSYISPTASLMRKNGTET-QKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFP 418
+ + ++ K + KR L L D +G SV T+WG + D+
Sbjct: 314 LKEVQEVTQIVSKTTQKPYDKRELTLVDNTGYSVRCTIWGKTATN--------FDAQPES 365
Query: 419 ILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSL-- 476
I+A+K +VSDF G+ + +S+ + I+PD PEAH LK W++ G+N + + +
Sbjct: 366 IVAMKGTKVSDFGGRSLSLLSSGTMAIDPDIPEAHHLKGWYDSSGRNNTFATHNNMATLG 425
Query: 477 -SVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKK 535
+ GR D KT+SQ+K+E LGT E PD+ ++ AT+VYIK DNF Y C CN+K
Sbjct: 426 GATGRKDDTKTISQVKEENLGTGEMPDYFSLKATVVYIKQDNFAYPGCR----SEGCNRK 481
Query: 536 VMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYS 595
V + GDG W C++C + YRYI+ + DHTG W++ F + A IMG SA +L
Sbjct: 482 VTDMGDGTWRCEKCQVNHDRPQYRYIMSVNVNDHTGQLWLSCFDDTARIIMGKSADELIE 541
Query: 596 LKYVDQNDE-KFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFI 654
++ +NDE + A K F+ + K +TF ++QRV+ V+ A +Y E +
Sbjct: 542 MR---ENDETRLAAEFEQANCRKLNFRCRAKMDTFGEQQRVRYQVMSAAPLDYKMEGNKL 598
Query: 655 LDLMD 659
+L++
Sbjct: 599 NELIN 603
>gi|85102469|ref|XP_961333.1| replication factor-A protein 1 [Neurospora crassa OR74A]
gi|18376393|emb|CAD21282.1| probable single-stranded DNA-binding protein 68k chain [Neurospora
crassa]
gi|28922877|gb|EAA32097.1| replication factor-A protein 1 [Neurospora crassa OR74A]
gi|336473157|gb|EGO61317.1| hypothetical protein NEUTE1DRAFT_144541 [Neurospora tetrasperma
FGSC 2508]
gi|350293584|gb|EGZ74669.1| putative single-stranded DNA-binding protein 68k chain [Neurospora
tetrasperma FGSC 2509]
Length = 610
Score = 328 bits (842), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 212/666 (31%), Positives = 340/666 (51%), Gaps = 95/666 (14%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
+P+LQ + +K + SK +RFR+VLSD Q M+ATQ N LV GLLQ G +
Sbjct: 26 VPILQCLQIKTLDSKNGGA--GATERFRIVLSDLKNYVQCMMATQTNHLVHDGLLQRGCI 83
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVIIDKCDP--IGKPVPAQRPSSNEQPGSVTGNPQSNA 118
VRL ++ ++ + I+IV+DL+VI P +G P P G + PQ N
Sbjct: 84 VRLKQYQAQCLKGKNILIVLDLEVIQSLGCPEKMGDPQPL---------GPRSAEPQQN- 133
Query: 119 TGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPR 178
P +G+ +G + +S + +
Sbjct: 134 ---------------------------------------PNLGS-TGFYGVKSEPTQDTK 153
Query: 179 PEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARV 238
P+F R Q PS A+ G + S I PI L+P+ KWTIKARV
Sbjct: 154 PQFPR---------------QMPSRNASGG-----QGSSTIYPIEGLSPFSHKWTIKARV 193
Query: 239 TAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG-S 297
T+K +++ ++ G+GK+F + LD + GEIR T FN DQFY ++ G++Y +S
Sbjct: 194 TSKSDIKTWHKASGEGKLFSVNFLD-ESGEIRATGFNDQVDQFYDLLQEGQVYYISTPCR 252
Query: 298 LKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLI 357
++ A+K +++L ND E+ + ++++ ED S+P+ +F+F I +++ +E ++ VD+I
Sbjct: 253 VQLAKKQWSNLPNDYELTFERDTVIEKA-EDQTSVPQVRFNFVNIQELQDVERDATVDII 311
Query: 358 GVVSYISPTASLMRKNGTET-QKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGV 416
GV+ + ++ K + KR L L D +G SV T+WG + D+
Sbjct: 312 GVLKEVQEVTQIVSKTTQKPYDKRELTLVDNTGYSVRCTIWGKTATN--------FDAQP 363
Query: 417 FPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKN-TQSVSISRDS 475
I+A K +VSDF G+ + +S+ + I+PD PEAH LK W++ G+N T + + +
Sbjct: 364 ESIVAFKGTKVSDFGGRSLSLLSSGTMAIDPDIPEAHHLKGWYDSSGRNNTFATHNNMQT 423
Query: 476 L--SVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCN 533
L + GR D KT+SQ+K+E LGT E PD+ + AT+V+IK DNF Y C CN
Sbjct: 424 LGGATGRKDDAKTISQVKEENLGTNEAPDYFALKATVVFIKQDNFAYPGC----RSEGCN 479
Query: 534 KKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDL 593
+KV + GDG W C++C + YRYI+ + DHTG W++ F + A IMG SA +L
Sbjct: 480 RKVTDMGDGTWRCEKCQINHDRPQYRYIMSVNVNDHTGQLWLSCFDDTARVIMGKSADEL 539
Query: 594 YSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRF 653
++ D+ + A K F+ + K +TF ++QR++ V+ +Y E
Sbjct: 540 MEIRETDET--RLPAEFEQANCRKLNFRCRAKMDTFGEQQRIRYQVMSVAPLDYKMEGNK 597
Query: 654 ILDLMD 659
+ +L++
Sbjct: 598 LNELIN 603
>gi|348505238|ref|XP_003440168.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Oreochromis niloticus]
Length = 606
Score = 327 bits (838), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 173/443 (39%), Positives = 265/443 (59%), Gaps = 18/443 (4%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
S+++PIA+LNPY KWTI+ARVT K +R ++N RGDGK+F +++D + GEIRVT FN
Sbjct: 173 SKVVPIASLNPYQSKWTIRARVTNKSAIRTWSNSRGDGKLFSMEIVD-ESGEIRVTGFNQ 231
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
D+F+ +EAGK+Y +S+GSLK A K + + ND E+ L+ S + C ED +P Q
Sbjct: 232 EVDKFFSLIEAGKVYYISKGSLKIANKQYTSVKNDYEMTLNGESTIIPC-EDSCDVPMVQ 290
Query: 337 FHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTL 396
F I+D+E + +++VD+IGV + L K+ E KRTL L DMSG+ V +TL
Sbjct: 291 CDFVSISDLENRDKDAIVDVIGVCKSVDDITRLTTKSNREVSKRTLSLMDMSGKVVTVTL 350
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
WG D P++A+K ++SDF G+ + ++ L I PD PEA++L+
Sbjct: 351 WGEEA--------EKFDGSSQPVIAIKGAKLSDFGGRSLSASFSSTLMINPDIPEAYKLR 402
Query: 457 EWFEKEGKNTQSVSISRDSLSVGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVYIKC 515
W++KEG S++ G + K+++ +K E LG +K D+ T ATIV+++
Sbjct: 403 GWYDKEGHAMDGQSLTEVKGGSGGGNTNWKSLADVKTEHLGHGDKADYYTCVATIVFLRK 462
Query: 516 DNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWV 575
+N Y ACP + CNKKV++ +G + C++CD+ YR IL I D+ WV
Sbjct: 463 ENCLYQACP----SQDCNKKVVDQQNGMFRCEKCDKEFPNFKYRLILSANIADYGDNQWV 518
Query: 576 TAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRV 635
T FQE AE I+G +A L LK D N+ F EV ++A F ++F+ +VK ET++DE R+
Sbjct: 519 TCFQESAEAILGQNAAYLGQLK--DSNEAAFDEVFQHANFNTFVFRNRVKLETYNDESRI 576
Query: 636 KSTVVKAERYNYSSET-RFILDL 657
K+TV+ + ++ + R IL++
Sbjct: 577 KATVMDVKPVDHKEYSKRLILNI 599
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 26 RFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSVVRLTKFTCNVIQN-RMIVIVMDLD 83
RFR+++SDG + ML+TQ N + +L + L + N++++ R +VI++++D
Sbjct: 39 RFRVMMSDGRHTLSSFMLSTQLNHMAEENILAPNCICNLKRHVTNILKDGRRVVIILEID 98
Query: 84 VI---IDKCDPIGKPVP 97
VI D IG P P
Sbjct: 99 VIKPAKDVAGRIGDPTP 115
>gi|406860812|gb|EKD13869.1| replication factor-a protein 1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 611
Score = 327 bits (838), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 214/666 (32%), Positives = 343/666 (51%), Gaps = 98/666 (14%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
+PV Q + +K + S + R+R+VLSD Q MLATQ N +V G L+ GS+
Sbjct: 30 VPVCQCVQIKTLASSGE----GAADRYRLVLSDVDNFVQSMLATQANHVVHEGKLKKGSI 85
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVI--IDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNA 118
VRL ++ N ++ + I+I++DL+VI + + + IG PV + E+P
Sbjct: 86 VRLKQYQANAVKGKRILIILDLEVIESLGEMEKIGDPVAL---TVKEEP----------- 131
Query: 119 TGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPR 178
D PA + AG+G + NQ
Sbjct: 132 --------------------DVKPANTTI--------------AGNGFYGNQ-------- 149
Query: 179 PEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARV 238
P+ S P A P PS A+ + I PI L+PY KWTIKARV
Sbjct: 150 PKASAPIKQERA----LPSRTGPSSSASH---------ATIYPIEGLSPYAHKWTIKARV 196
Query: 239 TAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG-S 297
T K +++ ++ +GK+F +LLD + GEI+ T FN DQ Y + G +Y +S
Sbjct: 197 TQKSDIKTWHKPSSEGKLFSVNLLD-ETGEIKATGFNDQCDQLYELFQEGAVYYISSPCK 255
Query: 298 LKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLI 357
++ A+K F++L ND E+ + ++V+ ED A +P+ +++F I +++ +E +S++D+I
Sbjct: 256 VQLAKKQFSNLSNDYELTFERDTVVEKA-EDQADVPQIRYNFTGIGELQNIEKDSMIDII 314
Query: 358 GVVSYISPTASLMRKNGTET-QKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGV 416
GV+ ++ ++ K + KR L L D S SV LT+WG + + +S
Sbjct: 315 GVLKEVADVNQIVSKTTQKPFDKRELTLVDESDFSVRLTIWGK----SAVSFDAIPES-- 368
Query: 417 FPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGK-NT--QSVSISR 473
I+A K +VSDF G+ + +S+ + I PD EAH+L+ W++ +G+ NT ++S
Sbjct: 369 --IIAFKGAKVSDFGGRSLSLLSSGTMAINPDISEAHKLRGWYDSQGRMNTFQSHQNMSG 426
Query: 474 DSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCN 533
+ GR+D KT++Q+++E LG E+PD+ +V ATIVYIK DNF Y AC + CN
Sbjct: 427 AGAAGGRSDPLKTIAQVREENLGMSEQPDYFSVKATIVYIKQDNFAYPACL----NDGCN 482
Query: 534 KKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDL 593
KKV++ GDG W C++C+ S + +YRYI+ + D+TG W+ F + +MG S L
Sbjct: 483 KKVIDMGDGSWQCEKCNVSHPKPEYRYIMSLNVNDYTGQLWLNCFDDVGRLVMGHSGDQL 542
Query: 594 YSLKYVDQNDEKFGE-VVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETR 652
L+ +ND E + T Y+FK + K + F D+ RV+ V+ A N+ E +
Sbjct: 543 MELR---ENDTAAMEKAFETSNCTTYIFKCRAKMDNFQDQTRVRYQVMNASPVNFVQEAK 599
Query: 653 FILDLM 658
+ DL+
Sbjct: 600 KLADLI 605
>gi|313666982|gb|ADR72941.1| replication protein A1 [Brachionus ibericus]
Length = 611
Score = 326 bits (836), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 210/668 (31%), Positives = 332/668 (49%), Gaps = 102/668 (15%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQ-GMLATQRNELVTSGLLQIGSV 60
P+LQ++ +K + Q R+++ L DG G+LATQ+N LV S L+IGSV
Sbjct: 21 PILQIIQMKNI-----QNNMDGMTRYKVTLYDGETQHTFGILATQKNSLVESNQLRIGSV 75
Query: 61 VRLTKFTCNVIQN---RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSN 117
++L ++ NV+ ++ +I+++ + I+ + DP KP +N
Sbjct: 76 IKLEEYAANVLSKDPPKVAIILLNFE-ILGEMDPNSKP------------------QATN 116
Query: 118 ATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNP 177
A +SQ P+ + N+ PN KP + SF FS
Sbjct: 117 A------------ISQ--------PSKQIQNENIEPN--KPNNQTNTKSF------FSKK 148
Query: 178 RPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKAR 237
+F + ++N P + + G I++LNPY KW IKAR
Sbjct: 149 ENDFEKAQSTN-----------PPGTFNGFKIFG----------ISSLNPYQNKWAIKAR 187
Query: 238 VTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGS 297
VT K +R Y+N RG+GK+F+ +L+DS GEIR FN D+FY ++ ++Y +S+ +
Sbjct: 188 VTNKSNIRTYSNARGEGKLFNVELIDS-TGEIRANGFNEQVDKFYEMLQIDQVYYISKAN 246
Query: 298 LKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLI 357
LK A K + L ND E+ + +++Q C E D +PR + I ++ N VD+I
Sbjct: 247 LKTANKQYCKLDNDYEMTFNNETVIQPCEETD-DLPRINLNLVKIKEISNHAANDFVDVI 305
Query: 358 GVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGV 416
GVV + +++ K+ E +KR L + D S ++ TLWG D S
Sbjct: 306 GVVRSVGDVTTIITKSTNRELKKRELSIVDNSECAITATLWGKQAED-------YDPSDS 358
Query: 417 FPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSL 476
+P++ +K ++ D+NGK + STT + I PD PEAH +K WFE+ G + +S +
Sbjct: 359 YPVILLKGAKIGDYNGKTLSVASTTVVQINPDLPEAHTVKGWFEQGGSESDIQDLSSQGM 418
Query: 477 SVGRADI---------RKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMI 527
+ A+ K + Q+KDE LG +K D+ + A ++Y K DN Y ACP
Sbjct: 419 AAAGANSGGPISGHSNWKFLDQLKDEKLGMGDKADYFSTKAYVLYAKKDNSMYMACP--- 475
Query: 528 GDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMG 587
G+ CNKK+ + DG + C++C ++ +R IL + D W T FQE AE I+G
Sbjct: 476 GEN-CNKKIFDQNDGTYRCEKCARNYPNFKWRMILNINLADFAESNWATCFQETAETILG 534
Query: 588 MSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNY 647
+ ++L LK + ND KF E+ F ++ FKL+ K ET++DE+RVK + V E +Y
Sbjct: 535 IGTEELGELK--NSNDPKFDEIFSECAFKEFNFKLRAKMETYNDERRVKVSAVTVEPVDY 592
Query: 648 SSETRFIL 655
+ R IL
Sbjct: 593 AQSGRRIL 600
>gi|390597691|gb|EIN07090.1| replication factor-a protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 621
Score = 325 bits (833), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 206/670 (30%), Positives = 330/670 (49%), Gaps = 97/670 (14%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P +Q + +K +S + R+R+++SDG Q MLATQ N L+ + S+V
Sbjct: 28 PTVQFLSIK-KISPTGPPGANAPDRYRIIMSDGEHFVQAMLATQLNHLIEDETIGKHSIV 86
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGV 121
L +FT NV+Q R ++I++DL ++ + IG P ++T + Q G
Sbjct: 87 VLDRFTANVVQERRLIIILDLTPVLKIAEKIG------------DPSAITLSDQPTTDG- 133
Query: 122 SLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEF 181
+ P A +A V + +PP G+ S QSA
Sbjct: 134 -----DVPMAETAPTPAPARASAPSVSNTVPPRSAPQRSTPGNKSGGRQSA--------- 179
Query: 182 SRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAK 241
I+PI L+PY WTIKARVT K
Sbjct: 180 -------------------------------------ILPIEGLSPYQNNWTIKARVTQK 202
Query: 242 GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPA 301
++R ++NQRG+GK+F+ L+D + GEIR T FN V D Y + + GK+Y +SR + A
Sbjct: 203 SDIRTWSNQRGEGKLFNVTLMD-ESGEIRGTGFNDVVDALYEKFQEGKVYFISRARVNLA 261
Query: 302 QKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVS 361
+K F++L ND E+ + + V+ C D + +P ++ F P+ ++E E +S D++GVV
Sbjct: 262 KKKFSNLANDYELSFERNTEVEECL-DPSGVPAVKYEFTPLAELEQKEKDSTCDVLGVVK 320
Query: 362 YISPTASLMRKNG-TETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPIL 420
A+++ K E KR L L D SG SV LTLWG + + P++
Sbjct: 321 EDGGVATIVSKTTHKELLKRELTLVDSSGYSVRLTLWG--------KQAEAWNHTDNPVV 372
Query: 421 AVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLS--- 477
A K RV DF G+ + +S++ + IEPD PE H L+ W++ G N+QS S LS
Sbjct: 373 AFKGVRVGDFGGRSLSMVSSSTMQIEPDIPEVHHLRGWYDGVG-NSQSFQ-SHSFLSGGA 430
Query: 478 --------VGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGD 529
RA++ KT+ +I+D LG+ ++PD AT+++++ +N Y ACP
Sbjct: 431 GGAGMGGTFNRAEV-KTLGEIRDLQLGSSDRPDNFFAQATVMHVRGENIAYPACP----K 485
Query: 530 RPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM-GM 588
CNKKV+ DGRW C++CD+S +YRYI+ + DHTG W F + + M
Sbjct: 486 EGCNKKVVQIPDGRWRCEKCDESYDAPEYRYIVSMAVADHTGQAWFQGFNDVGLAVFNNM 545
Query: 589 SAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYS 648
SA +L +K ++++ KF ++ A + F + K++TF D RV+ + + +Y+
Sbjct: 546 SATELVQIK--ERDEAKFNGILHKAGCQTFNFSCRAKQDTFGDSTRVRYGISRITPLDYA 603
Query: 649 SETRFILDLM 658
++ ++ DL+
Sbjct: 604 ADAAYLRDLL 613
>gi|311268067|ref|XP_003131870.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit [Sus
scrofa]
Length = 616
Score = 325 bits (832), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 172/443 (38%), Positives = 262/443 (59%), Gaps = 21/443 (4%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
++++PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D + GEIR T FN
Sbjct: 182 AKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNE 240
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
D+F+ ++ K+Y S+G+LK A K F + ND E+ + V C ED +P Q
Sbjct: 241 QVDKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFSNETSVMPC-EDGHHLPTVQ 299
Query: 337 FHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F I D+E +S+VD+IG+ +Y T ++ E KR ++L DMSG+ V T
Sbjct: 300 FDFTGIADLENKSKDSLVDIIGICKNYEDVTKITVKSTNREVSKRNIYLMDMSGKVVNAT 359
Query: 396 LWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
LWG + DG R P++A+K RVSDF G+ + +S++ + + PD PEA++
Sbjct: 360 LWGEDADKFDGSRQ---------PVMAIKGARVSDFGGRSLSILSSSTVIVNPDIPEAYK 410
Query: 455 LKEWFEKEGKNTQSVSISR-DSLSVGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVY 512
L+ WF+ EG+ VSIS S +G ++ KT+ ++K E LG +KPD+ + AT+VY
Sbjct: 411 LRGWFDSEGQALDGVSISDLKSGGIGGSNTNWKTLYEVKSENLGQGDKPDYFSAVATVVY 470
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
++ +N Y ACP + CNKKV++ +G + C++CD YR IL I D
Sbjct: 471 LRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQEN 526
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
WVT FQE AE I+G S L LK ++N++ F EV +NA F + F+++VK ET++DE
Sbjct: 527 QWVTCFQESAEAILGQSTAYLGELK--EKNEQAFEEVFQNANFRSFTFRIRVKLETYNDE 584
Query: 633 QRVKSTVVKAERYNYSSETRFIL 655
R+K TV+ + +Y R ++
Sbjct: 585 SRIKGTVMDVKPVDYKEYGRRLI 607
>gi|354504939|ref|XP_003514530.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit,
partial [Cricetulus griseus]
Length = 498
Score = 323 bits (829), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 172/446 (38%), Positives = 266/446 (59%), Gaps = 22/446 (4%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
S+++PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D + GEIR T FN
Sbjct: 66 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNE 124
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
D+F+ +E K+Y S+G+LK A K F+ + ND E+ + + V C ED +P Q
Sbjct: 125 QVDKFFPLIEVNKVYYFSKGTLKIANKQFSAVKNDYEMTFNNETSVLPC-EDGHHLPTVQ 183
Query: 337 FHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F I+D+E +S+VD+IG+ SY T ++ + E KR ++L DMSG+ V T
Sbjct: 184 FDFTGISDLESKSKDSLVDIIGICKSYEDSTKITVKSSNREVAKRNIYLMDMSGKVVTAT 243
Query: 396 LWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
LWG + DG R P++A+K RVSDF G+ + +S++ + + PD PEA++
Sbjct: 244 LWGEDADKFDGSRQ---------PVMAIKGARVSDFGGRSLSVLSSSTIIVNPDIPEAYK 294
Query: 455 LKEWFEKEGKNTQSVSIS--RDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVY 512
L+ WF+ EG+ VSIS R + G KT+ + K E LG +K D+ + AT+V+
Sbjct: 295 LRGWFDSEGQALDGVSISDLRSGGAGGNNTNWKTLYEAKSENLGQGDKADYFSTVATVVF 354
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
++ +N Y ACP + CNKKV++ +G + C++CD+ YR IL + D
Sbjct: 355 LRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSVNVADFQEN 410
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
WVT FQE AE I+G + L LK ++N++ F EV +NA F + F+++VK ET++DE
Sbjct: 411 QWVTCFQESAEAILGQNTAYLGELK--EKNEQAFEEVFQNANFRSFTFRIRVKLETYNDE 468
Query: 633 QRVKSTVVKAERYNYSS-ETRFILDL 657
R+K+TV+ + +Y R I+++
Sbjct: 469 SRIKATVMDVKPVDYRDYAKRLIMNI 494
>gi|367036607|ref|XP_003648684.1| hypothetical protein THITE_2106430 [Thielavia terrestris NRRL 8126]
gi|346995945|gb|AEO62348.1| hypothetical protein THITE_2106430 [Thielavia terrestris NRRL 8126]
Length = 610
Score = 323 bits (827), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 213/666 (31%), Positives = 335/666 (50%), Gaps = 89/666 (13%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
+PVLQ + LK + K QR+R++LSD Q MLATQ N +V SG L GS+
Sbjct: 27 VPVLQCLQLKTLEGKGPG---GGAQRYRVILSDIRNYVQCMLATQANHVVHSGQLDRGSI 83
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATG 120
VRL ++ + ++ + ++IV+DL+VI +G P P + E V P S G
Sbjct: 84 VRLKQYQASSVKGKNVMIVLDLEVI----SHLGNPEKIGEPKAVE----VRTQPHSTTIG 135
Query: 121 VSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPE 180
G+G + +S S + +
Sbjct: 136 ------------------------------------------GAGFYGVKSEPASETKSQ 153
Query: 181 FSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTA 240
+ AS P A A G G + S I PI AL+PY KWTIK RVT+
Sbjct: 154 VQKQVASR----PAA---------AASGSGGHA--ASTIYPIEALSPYSNKWTIKVRVTS 198
Query: 241 KGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG-SLK 299
K ++R ++ GDGK+F +LLD + GEIR T FN DQFY ++ G +Y +S ++
Sbjct: 199 KSDIRTWHKASGDGKLFSVNLLD-ETGEIRATGFNEQVDQFYDLLQEGSVYYISTPCKVQ 257
Query: 300 PAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGV 359
A+K F++L ND E+ + ++++ ED +S+P+ +F+F I ++ +E ++ VD+IGV
Sbjct: 258 LAKKQFSNLANDYEMMFERDTVIEKA-EDQSSVPQLRFNFCNIEELRDVEKDATVDVIGV 316
Query: 360 VSYISPTASLMRKNGTET-QKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFP 418
+ + ++ K + KR L L D +G SV +T+WG + D+
Sbjct: 317 LKEVGEVTEIISKTTQKPYDKRELTLVDDTGFSVRVTIWGKTATE--------FDANPES 368
Query: 419 ILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVS---ISRDS 475
I+A+K RVSDF G+ + +S+ + I+PD PEAH+LK W++ G+N + ++
Sbjct: 369 IIALKGTRVSDFGGRSLSLLSSGTMAIDPDIPEAHKLKGWYDSTGRNNAFATHSNLASVG 428
Query: 476 LSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKK 535
+ GR D KT+ Q+K E LG + + TV ATIV+I+ +NF Y AC CNKK
Sbjct: 429 AAAGRKDDTKTIGQVKSEKLGFDDAV-YFTVKATIVHIRQENFAYPACR----SENCNKK 483
Query: 536 VMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYS 595
V + GDG W C++C+ S YRYI+ + DHTG W+ F + A IMG +A +L
Sbjct: 484 VTDMGDGTWRCEKCNLSHDRPQYRYIMSINVSDHTGQMWLNCFDDSARIIMGKTADELVE 543
Query: 596 LKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
++ + E A K F+ + K +T+ D+ RV+ V+ A +Y +E +
Sbjct: 544 MQATG-DKEGLDAAFEAANCRKLTFRCRAKMDTYGDQPRVRYQVMSAAPLDYKTEGHKLA 602
Query: 656 DLMDKL 661
+L+ ++
Sbjct: 603 ELIQQM 608
>gi|47122884|gb|AAH70559.1| LOC397937 protein [Xenopus laevis]
Length = 607
Score = 322 bits (824), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 170/443 (38%), Positives = 267/443 (60%), Gaps = 21/443 (4%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
S+++PIA+LNPY KWT++ARVT KG++R ++N RG+GK+F +++D + GEIR T FN
Sbjct: 171 SKVVPIASLNPYQSKWTVRARVTNKGQIRTWSNSRGEGKLFSIEMVD-ESGEIRATAFNE 229
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
AD+F+ +E K+Y S+G+LK A K + + ND E+ + + V C +D A +P Q
Sbjct: 230 QADKFFSIIEVNKVYYFSKGTLKIANKQYTSVKNDYEMTFNSETSVIPC-DDSADVPMVQ 288
Query: 337 FHFRPINDVEGMENNSVVDLIGVVSYISP-TASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F I ++E ++V+D+IGV + T ++ N E KR++HL D SG+ V T
Sbjct: 289 FEFVSIGELESKNKDTVLDIIGVCKNVEEVTKVTIKSNNREVSKRSIHLMDSSGKVVSTT 348
Query: 396 LWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
LWG + DG R P++A+K R+SDF G+ + +S++ + I PD PEA +
Sbjct: 349 LWGEDADKFDGSRQ---------PVVAIKGARLSDFGGRSLSVLSSSTVMINPDIPEAFK 399
Query: 455 LKEWFEKEGKNTQSVSI--SRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVY 512
L+ WF+ EG+ + SI SR + G K++ ++K+E LG EK D+ T ATIVY
Sbjct: 400 LRAWFDSEGQVVEGTSISESRGGGTGGGNTNWKSLLEVKNENLGHGEKADYFTSVATIVY 459
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
++ +N Y ACP + CNKKV++ +G + C++C++ YR IL I D
Sbjct: 460 LRKENCLYQACP----SQDCNKKVIDQQNGLFRCEKCNKEFPNFKYRLILSANIADFGEN 515
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
W+T FQE AE I+G +A L LK ++N++ + EV +NA F Y F+ +VK ET++DE
Sbjct: 516 QWITCFQESAESILGQNATYLGELK--EKNEQAYDEVFQNANFRSYTFRARVKLETYNDE 573
Query: 633 QRVKSTVVKAERYNYSSETRFIL 655
R+K+T V + ++ +R ++
Sbjct: 574 SRIKATAVDVKPVDHKEYSRRLI 596
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 58/101 (57%), Gaps = 11/101 (10%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P LQV++++ +++ + R+R+++SDG + MLATQ N LV + LL +
Sbjct: 23 PTLQVINIRPIITG------NGPPRYRLLMSDGLNTLSSFMLATQLNSLVDNNLLATNCI 76
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDK---CDPIGKPVP 97
++++F N +++ R ++IVM+LDV+ IG P P
Sbjct: 77 CQVSRFIVNNLKDGRRVIIVMELDVLKSADLVMGKIGNPQP 117
>gi|147901418|ref|NP_001081585.1| replication protein A 70 kDa DNA-binding subunit [Xenopus laevis]
gi|400975|sp|Q01588.1|RFA1_XENLA RecName: Full=Replication protein A 70 kDa DNA-binding subunit;
Short=RP-A p70; AltName: Full=Replication factor A
protein 1; Short=RF-A protein 1; AltName:
Full=Single-stranded DNA-binding protein
gi|65066|emb|CAA47665.1| replication protein A (RPA) [Xenopus laevis]
Length = 609
Score = 321 bits (823), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 170/443 (38%), Positives = 267/443 (60%), Gaps = 21/443 (4%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
S+++PIA+LNPY KWT++ARVT KG++R ++N RG+GK+F +++D + GEIR T FN
Sbjct: 173 SKVVPIASLNPYQSKWTVRARVTNKGQIRTWSNSRGEGKLFSIEMVD-ESGEIRATAFNE 231
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
AD+F+ +E K+Y S+G+LK A K + + ND E+ + + V C +D A +P Q
Sbjct: 232 QADKFFSIIEVNKVYYFSKGTLKIANKQYTSVKNDYEMTFNSETSVIPC-DDSADVPMVQ 290
Query: 337 FHFRPINDVEGMENNSVVDLIGVVSYISP-TASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F I ++E ++V+D+IGV + T ++ N E KR++HL D SG+ V T
Sbjct: 291 FEFVSIGELESKNKDTVLDIIGVCKNVEEVTKVTIKSNNREVSKRSIHLMDSSGKVVSTT 350
Query: 396 LWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
LWG + DG R P++A+K R+SDF G+ + +S++ + I PD PEA +
Sbjct: 351 LWGEDADKFDGSRQ---------PVVAIKGARLSDFGGRSLSVLSSSTVMINPDIPEAFK 401
Query: 455 LKEWFEKEGKNTQSVSI--SRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVY 512
L+ WF+ EG+ + SI SR + G K++ ++K+E LG EK D+ T ATIVY
Sbjct: 402 LRAWFDSEGQVVEGTSISESRGGGTGGGNTNWKSLLEVKNENLGHGEKADYFTSVATIVY 461
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
++ +N Y ACP + CNKKV++ +G + C++C++ YR IL I D
Sbjct: 462 LRKENCLYQACP----SQDCNKKVIDQQNGLFRCEKCNKEFPNFKYRLILSANIADFGEN 517
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
W+T FQE AE I+G +A L LK ++N++ + EV +NA F Y F+ +VK ET++DE
Sbjct: 518 QWITCFQESAESILGQNATYLGELK--EKNEQAYDEVFQNANFRSYTFRARVKLETYNDE 575
Query: 633 QRVKSTVVKAERYNYSSETRFIL 655
R+K+T V + ++ +R ++
Sbjct: 576 SRIKATAVDVKPVDHKEYSRRLI 598
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 11/101 (10%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P LQV++++ + + R+R+++SDG + MLATQ N LV + LL +
Sbjct: 23 PTLQVINIRPI------NTGNGPPRYRLLMSDGLNTLSSFMLATQLNSLVDNNLLATNCI 76
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDK---CDPIGKPVP 97
++++F N +++ R ++IVM+LDV+ IG P P
Sbjct: 77 CQVSRFIVNNLKDGRRVIIVMELDVLKSADLVMGKIGNPQP 117
>gi|196010750|ref|XP_002115239.1| hypothetical protein TRIADDRAFT_50671 [Trichoplax adhaerens]
gi|190582010|gb|EDV22084.1| hypothetical protein TRIADDRAFT_50671 [Trichoplax adhaerens]
Length = 556
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 174/485 (35%), Positives = 278/485 (57%), Gaps = 31/485 (6%)
Query: 183 RPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRII-PIAALNPYMGKWTIKARVTAK 241
+PY P+ P+++ + LV KSE +RI+ PI++L PY +WTI+ RVT+K
Sbjct: 96 KPYNDQSVTNPR------PTIHPQQNLVDKSE--NRIVFPISSLTPYQNRWTIRTRVTSK 147
Query: 242 GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPA 301
E+R ++N RG+GK+F DL+D + GEIR T F ++FY +E K+Y +SR S+K A
Sbjct: 148 SEIRKWSNSRGEGKLFSVDLID-ESGEIRATAFRDQVEKFYDVLEVNKVYYISRCSIKTA 206
Query: 302 QKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVS 361
KNF + ND E+ + V+ C +D AS+P+ F+F I D+E ++D++GVV
Sbjct: 207 NKNFTSIKNDYEMTFTNETAVEPC-DDIASLPKVSFNFVRIGDIENQPAERMIDVVGVVK 265
Query: 362 YISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILA 421
++ K+ + KR + L D SG+ V LTLWG + D FP++A
Sbjct: 266 SADDVVTINTKSNRQVNKRDIELVDDSGKVVRLTLWGTNAEE--------FDGSQFPVVA 317
Query: 422 VKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRA 481
V+ RV++F G+ + + ++QL PD PEAH L+ WF+ +GK+ + VSIS +G
Sbjct: 318 VRGARVTEFGGRSLSVVGSSQLMTNPDIPEAHILRGWFDVQGKDQELVSISTKRGDIGSP 377
Query: 482 DIR---KTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMN 538
K +S I E LG +EK D+ + ATI+YI+ +N Y ACP CNKKV++
Sbjct: 378 GFSGNWKNISDIHGENLGQQEKADYFNLKATIIYIRKENLMYKACP----KEDCNKKVID 433
Query: 539 NGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKY 598
G G + C++C+Q+ + YR ++ I D TG W+T FQE E ++ +A+ L + K
Sbjct: 434 QG-GSYRCEKCNQTFPDFKYRLMISASIVDSTGSNWLTFFQETGEAMLKCTAQQLGAWK- 491
Query: 599 VDQNDE-KFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDL 657
+NDE K+ + A F Y+ K++ K E+F+DE R+K + V +Y ++R +L+
Sbjct: 492 --ENDESKYEHTINEALFQSYILKVRAKMESFNDENRLKCSCVNLTPMDYVQQSRRLLEG 549
Query: 658 MDKLK 662
+ +++
Sbjct: 550 IRRMQ 554
Score = 62.8 bits (151), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 64/105 (60%), Gaps = 8/105 (7%)
Query: 18 QQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSVVRLTKFTCNVIQ-NRM 75
+ QH+ ++ +VLSDG + MLATQ N+ VTSG L ++++L +TCN++Q R
Sbjct: 14 KTHQHRFFKWLIVLSDGIHAYSSVMLATQLNQRVTSGELDAKAIIKLNNYTCNIVQETRK 73
Query: 76 IVIVMDLDVII--DKCDPIGKPVPAQRPS-SNEQPGSVTGNPQSN 117
+++++DL V+ + D IG+P P S +N +P T +PQ N
Sbjct: 74 VLVILDLTVLTCGSETDIIGQPKPYNDQSVTNPRP---TIHPQQN 115
>gi|336367309|gb|EGN95654.1| hypothetical protein SERLA73DRAFT_186799 [Serpula lacrymans var.
lacrymans S7.3]
gi|336380027|gb|EGO21181.1| hypothetical protein SERLADRAFT_476039 [Serpula lacrymans var.
lacrymans S7.9]
Length = 601
Score = 320 bits (821), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 197/640 (30%), Positives = 328/640 (51%), Gaps = 99/640 (15%)
Query: 26 RFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNRMIVIVMDLDVI 85
RFR+++SDG Q MLATQ N LV + +V + K TCN +Q++ ++I++DL V+
Sbjct: 50 RFRIIISDGVHFVQAMLATQLNRLVYDNEIGKNTVAIIDKLTCNFVQDKRLIIILDLRVV 109
Query: 86 IDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPAAR 145
S+NE GNP S +PA+
Sbjct: 110 ----------------STNEDK---IGNPISPVN---------------------LPASE 129
Query: 146 HVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYA 205
V ++ P S SN S + P+P +R QA
Sbjct: 130 QVSASPVP----------EASTSNASIPQTKPQP----------SRQNQA---------- 159
Query: 206 NRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSD 265
K + I PI L+PY WTIKARVT K E+R ++NQRG+GK+F+ L+D +
Sbjct: 160 -----AKGGRQNSIYPIEGLSPYQNNWTIKARVTQKSEIRTWSNQRGEGKLFNVTLMD-E 213
Query: 266 GGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLC 325
GEIR T FNAV D+ Y ++E GK+YL+S+ + A+K F+++ ND E+ L+ + V+ C
Sbjct: 214 SGEIRATGFNAVVDELYEKLEEGKVYLISKARVNLAKKKFSNVQNDYELSLEKHTEVEEC 273
Query: 326 YEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLR 385
E + +P +++F ++++E +S D+ +V + P ++ K KR L +
Sbjct: 274 LE-TSGLPMIKYNFISLSELEAQPKDSTCDVAAIVKEVGPLGEIVSKTNRTIPKRELTIV 332
Query: 386 DMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFI 445
D SG SV LTLWG + +S P++A K +V DF G+ + IST+ + I
Sbjct: 333 DKSGFSVRLTLWG--------KQAEQYNSEGHPVIAFKGVKVGDFGGRSLSMISTSMMSI 384
Query: 446 EPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVG------RADIRKTVSQIKDEGLGTKE 499
+PD E+H L+ W++ G S S + S+G R+++R +S +K+ LG +
Sbjct: 385 DPDIDESHLLRGWYDSIGVEQAFQSHSNANSSMGMSTVFNRSEMRH-LSDVKESQLGMSD 443
Query: 500 KPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYR 559
K D+ + +TI++IK +N Y ACP + CNKKV + GDG W C++C+++ ++R
Sbjct: 444 KTDFFSCRSTIMHIKGENISYPACPT----QGCNKKVTDIGDG-WRCEKCEKTFERPEHR 498
Query: 560 YILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYL 619
YI+ + D + W+ F + + G SA DL +K ++++ ++ V+ A+ +
Sbjct: 499 YIISLAVADWSTQAWLQGFNDAGVAVFGKSADDLMEIK--ERDEAEYNTVMAKASGATFN 556
Query: 620 FKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMD 659
F + K++T++D+ RV+ +VK +Y E +++ DL++
Sbjct: 557 FTCRAKQDTYNDQTRVRYGIVKLNPVDYREEAKYLRDLLN 596
>gi|62751648|ref|NP_001015732.1| replication protein A 70 kDa DNA-binding subunit [Xenopus
(Silurana) tropicalis]
gi|82194954|sp|Q5FW17.1|RFA1_XENTR RecName: Full=Replication protein A 70 kDa DNA-binding subunit;
Short=RP-A p70; AltName: Full=Replication factor A
protein 1; Short=RF-A protein 1
gi|58477644|gb|AAH89665.1| MGC107891 protein [Xenopus (Silurana) tropicalis]
gi|89269807|emb|CAJ81527.1| replication protein A1 [Xenopus (Silurana) tropicalis]
gi|115312915|gb|AAI23969.1| MGC107891 protein [Xenopus (Silurana) tropicalis]
gi|213624489|gb|AAI71175.1| MGC107891 protein [Xenopus (Silurana) tropicalis]
gi|213625713|gb|AAI71177.1| MGC107891 protein [Xenopus (Silurana) tropicalis]
Length = 609
Score = 320 bits (820), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 169/442 (38%), Positives = 265/442 (59%), Gaps = 20/442 (4%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
S+++PIA+LNPY KWT++ARVT KG++R ++N RG+GK+F +++D + GEIR T FN
Sbjct: 174 SKVVPIASLNPYQSKWTVRARVTNKGQIRTWSNSRGEGKLFSIEMVD-ESGEIRATAFNE 232
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
AD+F+ +E K+Y S+G+LK A K + + ND E+ + + V C +D A +P Q
Sbjct: 233 QADKFFSLIEVNKVYYFSKGTLKIANKQYTSVKNDYEMTFNSETSVIPC-DDSADVPMVQ 291
Query: 337 FHFRPINDVEGMENNSVVDLIGVVSYISP-TASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F PI ++E ++V+D+IG+ T +R N E KR ++L D SG+ V T
Sbjct: 292 FEFVPIGELESKNKDTVLDIIGICKNAEEVTKVTIRSNNREVSKRNINLMDSSGKVVSTT 351
Query: 396 LWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
LWG + DG R P++A+K R+SDF G+ + +S++ + I PD PEA +
Sbjct: 352 LWGEDADKFDGSRQ---------PVVAIKGARLSDFGGRSLSVLSSSTVMINPDIPEAFK 402
Query: 455 LKEWFEKEGKNTQSVSISRDSLSVGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVYI 513
L+ WF+ EG+ + SIS G + K++ ++K E LG EK D+ T ATIVY+
Sbjct: 403 LRAWFDSEGQVVEGTSISESRGGTGGGNTNWKSLLEVKTENLGHGEKADYFTSVATIVYL 462
Query: 514 KCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLT 573
+ +N Y ACP + CNKKV++ +G + C++CD+ YR IL I D
Sbjct: 463 RKENCLYQACP----SQDCNKKVIDQQNGLFRCEKCDKEFPNYKYRLILSANIADFGENQ 518
Query: 574 WVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQ 633
W+T FQE AE I+G +A L LK ++N++ + EV +NA F Y F+++VK ET++DE
Sbjct: 519 WITCFQESAESILGQNATYLGELK--EKNEQAYDEVFQNANFRSYTFRIRVKLETYNDES 576
Query: 634 RVKSTVVKAERYNYSSETRFIL 655
R+K+T + + ++ +R ++
Sbjct: 577 RIKATAMDVKPVDHKEYSRRLI 598
Score = 46.2 bits (108), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 52/86 (60%), Gaps = 8/86 (9%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P LQV++++ + + R+R+++SDG + MLATQ N LV + LL +
Sbjct: 23 PTLQVINIRSI------NTGNGPPRYRLLMSDGLNTLSSFMLATQLNFLVDNNLLATNCI 76
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVI 85
++++F N +++ R ++IVM+++V+
Sbjct: 77 CQVSRFIVNNLKDGRRVIIVMEMEVL 102
>gi|71022145|ref|XP_761303.1| hypothetical protein UM05156.1 [Ustilago maydis 521]
gi|46097797|gb|EAK83030.1| hypothetical protein UM05156.1 [Ustilago maydis 521]
Length = 623
Score = 317 bits (813), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 208/677 (30%), Positives = 338/677 (49%), Gaps = 98/677 (14%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PV Q++ +K + + R+R++LSDG Q MLA+Q+ +V SG L+ +V
Sbjct: 28 PVCQILSIK-KIQASATSAANVGDRYRIILSDGINYAQAMLASQKRSMVESGELEKNCLV 86
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKC-DPIGKPVPAQRPSSNEQPGSVTGNPQSNATG 120
R+T+F N +QNR I+I++DLDV+ D +G P + E G V +NA G
Sbjct: 87 RVTQFASNSVQNRRILILLDLDVVHKPTEDRLGHPTNVEEAVKAE--GGVKQEGGANALG 144
Query: 121 VSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPE 180
S +N+ G T +A + P G GS
Sbjct: 145 NSALGNNSA------GRTTPATSAMGKAAGGRP---------GGGSV------------- 176
Query: 181 FSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTA 240
+A P P ++ S Y NR + K+ V S
Sbjct: 177 --------HAGMPIYP-IEGLSPYQNRWTI-KARVTS----------------------- 203
Query: 241 KGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKP 300
K ++RH++NQRG+GK+F +LLD D GEI+ T FN D+FY ++ +YL+S+ +
Sbjct: 204 KSDIRHWSNQRGEGKLFSVNLLD-DSGEIKATGFNDAVDRFYPLLQENHVYLISKARVNI 262
Query: 301 AQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVV 360
A+K F++L N+ EI + ++ ++ C D +P ++ F IN++E +E N D+IG++
Sbjct: 263 AKKQFSNLQNEYEITFENSTEIEEC-TDATDVPEVKYEFVRINELESVEANQTCDVIGIL 321
Query: 361 -SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG----NFCNDDGLRLQHMCDSG 415
SY + + + + QKR L L D RSV+LTLWG F + G+ +
Sbjct: 322 DSYGELSEIVSKASQRPVQKRELTLVDQGNRSVKLTLWGKTAETFPTNAGVDEK------ 375
Query: 416 VFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQ-------- 467
P+LA K +V DF G+ + S++ + I PD E+H L+ W++ +G + Q
Sbjct: 376 --PVLAFKGVKVGDFGGRSLSMFSSSTMLINPDITESHVLRGWYDNDGAHAQFQPYTNGG 433
Query: 468 -SVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIM 526
+ R+T+ Q+KDE LG EKPD+ V AT+VYIK +N YTAC
Sbjct: 434 VGGGAMGGGGAGANMAERRTIVQVKDENLGMSEKPDYFNVRATVVYIKQENLYYTAC--- 490
Query: 527 IGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM 586
CNKKV + + W C++CD+S +YRYIL + D TG W++ F E A +++
Sbjct: 491 -ASEGCNKKVNLDHENNWRCEKCDRSYATPEYRYILSTNVADATGQMWLSGFNEDATQLI 549
Query: 587 GMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYN 646
GMSA +L+ L+ ++++ +F + A Y+F + K +TF+D RV+ T+ +A +
Sbjct: 550 GMSAGELHKLR--EESESEFSAALHRAANRMYMFNCRAKMDTFNDTARVRYTISRAAPVD 607
Query: 647 YSSETRFILDLMDKLKS 663
++ ++L+D +++
Sbjct: 608 FAKAG---MELVDAIRA 621
>gi|310793692|gb|EFQ29153.1| replication factor-a protein 1 [Glomerella graminicola M1.001]
Length = 608
Score = 317 bits (811), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 206/666 (30%), Positives = 340/666 (51%), Gaps = 94/666 (14%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
+PVLQ + +K + + Q +R+R+VLSD + Q MLATQ N +V L +
Sbjct: 28 VPVLQCLQIKPLAA----QAGGGAERYRIVLSDVNNYVQCMLATQVNHVVHENKLVRNCI 83
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATG 120
VR+T++ N ++ + I+I++ L+VI + +G P G PQ
Sbjct: 84 VRITQYQANSVKGKNILIILGLEVI----EQLGTP-------------DKIGEPQ----- 121
Query: 121 VSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPE 180
P + PAA + G +F + P+P+
Sbjct: 122 --------------PFEAKPPPAAANTT-------------IGGQNFYGVKQEETKPKPQ 154
Query: 181 FSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTA 240
S P S T Q S I PI AL+PY KWTIKARVT
Sbjct: 155 QSIPSRSAGGATGQ-------------------HGSSNIYPIEALSPYAHKWTIKARVTQ 195
Query: 241 KGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG-SLK 299
K ++R ++ G+GK+F +LLD + GEI+ T FN DQ+Y ++ G +Y +S ++
Sbjct: 196 KSDIRTWHKPSGEGKLFSVNLLD-ESGEIKATGFNEQVDQYYDMLQEGGVYYISSPCKVQ 254
Query: 300 PAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGV 359
A+K F +L ND E+ + ++++ ED +S+P+ +F+F I +++ +E ++ VD+IGV
Sbjct: 255 LAKKQFTNLPNDYELTFERDTVIEKA-EDQSSVPQVRFNFCNIQELQEVEKDATVDIIGV 313
Query: 360 VSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFP 418
+ + + ++ K+ G +KR L L D + SV +T+WG + D+
Sbjct: 314 LKDVDEVSQIVSKSTGKPYEKRELTLVDDTNYSVRVTIWGKSATN--------FDAKPES 365
Query: 419 ILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVS---ISRDS 475
++A K +VSDF G+ + +S+ + I+PD P+AHRLK W++ G+N S ++
Sbjct: 366 VVAFKGTKVSDFGGRSLSLLSSGTMSIDPDIPDAHRLKGWYDSSGRNDTFSSHNNMASMG 425
Query: 476 LSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKK 535
+ GR D K++ Q+K+E LG E+ D+ + ATIVYIK DNF Y AC + C+KK
Sbjct: 426 NATGRKDQDKSILQVKEENLGM-EQQDYFNLKATIVYIKQDNFAYPAC----MNEGCSKK 480
Query: 536 VMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYS 595
V + GDG W C++CD S + +YRYI+ + DHT W++ F + +MGMSA L +
Sbjct: 481 VTDMGDGTWRCEKCDVSHPKPEYRYIMSVNVCDHTNQLWLSCFDDVGRVVMGMSADQLMA 540
Query: 596 LKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
L+ ++++ K + A K F+ + K +TF + QR++ V+ A +Y +E +
Sbjct: 541 LR--EEDETKMAQAFEEANCRKLNFRCRAKMDTFGESQRIRYQVMSASPIDYKAEGAKLA 598
Query: 656 DLMDKL 661
+L+ +
Sbjct: 599 ELIKQF 604
>gi|51512372|gb|AAU05383.1| replication protein A 70 kDa subunit [Ustilago maydis]
Length = 623
Score = 317 bits (811), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 207/677 (30%), Positives = 338/677 (49%), Gaps = 98/677 (14%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PV Q++ +K + + R+R++LSDG Q MLA+Q+ +V SG L+ +V
Sbjct: 28 PVCQILSIK-KIQASATSAANVGDRYRIILSDGINYAQAMLASQKRSMVESGELEKNCLV 86
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKC-DPIGKPVPAQRPSSNEQPGSVTGNPQSNATG 120
R+T+F N +QNR I+I++DLDV+ D +G P + E G V +NA G
Sbjct: 87 RVTQFASNSVQNRRILILLDLDVVHKPTEDRLGHPTNVEEAVKAE--GGVKQEGGANALG 144
Query: 121 VSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPE 180
S +N+ G T +A + P G GS
Sbjct: 145 NSALGNNSA------GRTTPATSAMGKAAGGRP---------GGGSV------------- 176
Query: 181 FSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTA 240
+A P P ++ S Y NR + K+ V S+
Sbjct: 177 --------HAGMPIYP-IEGLSPYQNRWTI-KARVTSKF--------------------- 205
Query: 241 KGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKP 300
++RH++NQRG+GK+F +LLD D GEI+ T FN D+FY ++ +YL+S+ +
Sbjct: 206 --DIRHWSNQRGEGKLFSVNLLD-DSGEIKATGFNDAVDRFYPLLQENHVYLISKARVNI 262
Query: 301 AQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVV 360
A+K F++L N+ EI + ++ ++ C D +P ++ F IN++E +E N D+IG++
Sbjct: 263 AKKQFSNLQNEYEITFENSTEIEEC-TDATDVPEVKYEFVRINELESVEANQTCDVIGIL 321
Query: 361 -SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG----NFCNDDGLRLQHMCDSG 415
SY + + + + QKR L L D RSV+LTLWG F + G+ +
Sbjct: 322 DSYGELSEIVSKASQRPVQKRELTLVDQGNRSVKLTLWGKTAETFPTNAGVDEK------ 375
Query: 416 VFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQ-------- 467
P+LA K +V DF G+ + S++ + I PD E+H L+ W++ +G + Q
Sbjct: 376 --PVLAFKGVKVGDFGGRSLSMFSSSTMLINPDITESHVLRGWYDNDGAHAQFQPYTNGG 433
Query: 468 -SVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIM 526
+ R+T+ Q+KDE LG EKPD+ V AT+VYIK +N YTAC
Sbjct: 434 VGGGAMGGGGAGANMAERRTIVQVKDENLGMSEKPDYFNVRATVVYIKQENLYYTAC--- 490
Query: 527 IGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM 586
CNKKV + + W C++CD+S +YRYIL + D TG W++ F E A +++
Sbjct: 491 -ASEGCNKKVNLDHENNWRCEKCDRSYATPEYRYILSTNVADATGQMWLSGFNEDATQLI 549
Query: 587 GMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYN 646
GMSA +L+ L+ ++++ +F + A Y+F + K +TF+D RV+ T+ +A +
Sbjct: 550 GMSAGELHKLR--EESESEFSAALHRAANRMYMFNCRAKMDTFNDTARVRYTISRAAPVD 607
Query: 647 YSSETRFILDLMDKLKS 663
++ ++L+D +++
Sbjct: 608 FAKAG---MELVDAIRA 621
>gi|429855381|gb|ELA30339.1| replication factor-a protein 1 [Colletotrichum gloeosporioides Nara
gc5]
Length = 607
Score = 316 bits (809), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 208/666 (31%), Positives = 340/666 (51%), Gaps = 95/666 (14%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
+PVLQ + +K + + Q +R+R+VLSD + Q MLATQ N +V G L +
Sbjct: 28 VPVLQCLQIKPLAA----QAGGGAERYRIVLSDVNNYVQCMLATQVNHVVHDGKLVRNCI 83
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATG 120
VR+T++ N ++ + I+I++ L+VI + +G P G PQ+
Sbjct: 84 VRITQYQANAVKGKNILIILGLEVI----ENLGTP-------------DKIGEPQA---- 122
Query: 121 VSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPE 180
+ A PAA G +F + P+P+
Sbjct: 123 ---------------FEAKAPPAANTT--------------IGGQNFYGVKQEETKPKPQ 153
Query: 181 FSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTA 240
S P RT Q S + I PI AL+PY KWTIKARVT
Sbjct: 154 QSIP-----TRTAGGASGQHGS--------------NNIYPIEALSPYAHKWTIKARVTQ 194
Query: 241 KGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSR-GSLK 299
K ++R ++ G+GK+F +LLD + GEI+ T FN DQ+Y ++ G +Y +S ++
Sbjct: 195 KSDIRTWHKPSGEGKLFSVNLLD-ESGEIKATGFNEQVDQYYDLLQEGSVYYISNPCKVQ 253
Query: 300 PAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGV 359
A+K F +L ND E+ + ++++ ED +++P+ +F+F I +++ +E ++ VD+IGV
Sbjct: 254 LAKKQFTNLPNDYELTFERDTLIEKA-EDQSNVPQVRFNFCNIQELQEVEKDATVDVIGV 312
Query: 360 VSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFP 418
+ ++ + ++ K+ G +KR L L D + SV +T+WG ++ +
Sbjct: 313 LKDVAEVSQIVSKSTGKPYEKRELTLVDDTNYSVRVTIWGKSATGFDVKPES-------- 364
Query: 419 ILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKN---TQSVSISRDS 475
++A K +VSDF G+ + +S+ + I+PD EAHRLK W++ G+N +++
Sbjct: 365 VVAFKGVKVSDFGGRSLSLLSSGTMSIDPDITEAHRLKGWYDSSGRNDAFNTHNNMASMG 424
Query: 476 LSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKK 535
+ GR D K++ Q+K+E LG E+ D+ + ATIVYIK DNF Y AC C+KK
Sbjct: 425 NATGRKDQDKSIVQVKEENLGM-EQQDYFNLKATIVYIKQDNFAYPACM----SEGCSKK 479
Query: 536 VMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYS 595
V + GDG W C++CD S +YRYI+ + DHT W++ F + +MGMSA DL +
Sbjct: 480 VTDMGDGTWRCEKCDISHPRPEYRYIMSVNVCDHTNQLWLSCFDDVGRIVMGMSADDLMA 539
Query: 596 LKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
L+ D+ K + A K F+ + K +TF + QRV+ V+ A + ++ SE +
Sbjct: 540 LREDDET--KLAQAFEEANCRKLNFRCRAKMDTFGESQRVRYQVMSATQIDFKSEGAKLA 597
Query: 656 DLMDKL 661
DL+ +
Sbjct: 598 DLIKQF 603
>gi|443893823|dbj|GAC71279.1| hypothetical protein PANT_2d00035 [Pseudozyma antarctica T-34]
Length = 606
Score = 316 bits (809), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 165/453 (36%), Positives = 266/453 (58%), Gaps = 28/453 (6%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI L+PY +WTIKARVT+K ++RH++NQRG+GK+F +LLD D GEI+ T FN
Sbjct: 167 IYPIEGLSPYQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLD-DSGEIKATGFNDAV 225
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D+FY ++ +YL+S+ + A+K F++L N+ EI + ++ ++ C D +P ++
Sbjct: 226 DRFYSMLQENHVYLISKARVNIAKKQFSNLQNEYEITFENSTEIEEC-TDATDVPEVKYE 284
Query: 339 FRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLW 397
F IN++E +E N D+IGV+ SY + + + + QKR L L D RSV LTLW
Sbjct: 285 FVRINELESVEPNQTCDVIGVLDSYGELSEIVSKASQRPVQKRELTLVDQGQRSVRLTLW 344
Query: 398 G----NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAH 453
G NF N G+ + P++A K +V DF G+ + S++ + I PD E+H
Sbjct: 345 GKNAENFPNHAGVDEK--------PVIAFKGVKVGDFGGRSLSMFSSSTMLINPDITESH 396
Query: 454 RLKEWFEKEGKNTQSVSISRDSLSVGRADI-------RKTVSQIKDEGLGTKEKPDWITV 506
L+ WF+ +G + Q + + G R+T++Q+KD+ LG EKPD+ V
Sbjct: 397 VLRGWFDNDGAHAQFQPFTNGGGAGGAMGGGAANMAERRTIAQVKDQNLGMTEKPDYFNV 456
Query: 507 SATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQI 566
AT+VYIK +N YTACP CNKKV + +G W C++CD+S + +YRYIL +
Sbjct: 457 RATVVYIKQENLYYTACP----SDGCNKKVTPDHEGNWRCEKCDRSYEQPEYRYILSTNV 512
Query: 567 QDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKE 626
D TG W++ F + A ++MGMSA +L+ L+ ++++ +F V+ A Y F + K
Sbjct: 513 ADATGQIWLSGFNDDATKLMGMSAGELHKLR--EESESEFTAVLHRAANRMYTFNCRAKM 570
Query: 627 ETFSDEQRVKSTVVKAERYNYSSETRFILDLMD 659
++F+D+ RV+ T+ +A +++ ++D ++
Sbjct: 571 DSFNDQARVRYTISRAAPVDFAKAGAELVDAIN 603
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PV Q++ +K + R+R++LSDG + Q MLA+Q+ +V SG L+ +V
Sbjct: 27 PVCQILSIKKI-QASAASASSMGDRYRIILSDGVKYAQAMLASQKRSMVESGELEKHCLV 85
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVII-DKCDPIGKP 95
R++++ N +Q R I+I++DL V+ D IG P
Sbjct: 86 RISQYASNSVQGRRILILLDLSVVHPPTADRIGSP 120
>gi|387916032|gb|AFK11625.1| replication protein A [Callorhinchus milii]
Length = 611
Score = 315 bits (808), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 214/666 (32%), Positives = 334/666 (50%), Gaps = 93/666 (13%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQV+ ++ + + R+R++LSDG + MLATQ +V G + I V
Sbjct: 23 PLLQVISIRPIA--------NGPPRYRLLLSDGIHTLSSFMLATQLTPMVDEGRIAIHDV 74
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVIIDKCD----PIGKPVPAQRPSSNEQPGSVTGNPQS 116
++ KF CN +++ V+V+ ++ IG PVP
Sbjct: 75 CQINKFLCNTLKDGRRVVVVLDLKVVKTAHQVNGKIGNPVPF------------------ 116
Query: 117 NATGVSLQHHNNTRVSQLPGDTDAV-PAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFS 175
N T+ S L + V P SN PP A G +S + S
Sbjct: 117 --------SENQTQQSGLTATSSTVRPPQNGYASNDPP--------AQGGLAKTESRTLS 160
Query: 176 NPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIK 235
P S P P G ++ ++++PIA LNPY KWTI+
Sbjct: 161 KP---------SGVKTLPNTP--------------GGTQ--AKVVPIACLNPYQSKWTIR 195
Query: 236 ARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSR 295
ARVT K ++R ++N RG+GK+F +LLD + GEIR F D+F+ +E K+Y VS+
Sbjct: 196 ARVTNKSQIRTWSNSRGEGKLFSIELLD-ESGEIRAAAFTDQVDKFFPLIEVNKVYYVSK 254
Query: 296 GSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVD 355
G+LK A K + + ND E+ + + V C +D ++P+ QF F PI+ ++ ++++D
Sbjct: 255 GTLKTANKQYTSVKNDYEMTFNNDTTVIPC-DDGDNLPKVQFEFIPIDQLDTKNKDTMID 313
Query: 356 LIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDS 414
+IGV SY + +R E KR + L DMSG+ V TLWG +D + D
Sbjct: 314 IIGVCKSYEEVSKITVRTTNREVSKRNVQLLDMSGKIVTATLWG----EDAEKF----DG 365
Query: 415 GVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSIS-- 472
P+LA+K R+SD+ G+ + S++ L + PD PEA +L+ WF+ EG+ + +SIS
Sbjct: 366 SGQPVLAIKGARLSDYGGRSLSVTSSSTLMVNPDIPEAFKLRGWFDTEGQVVEGISISDL 425
Query: 473 RDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPC 532
+ G KT+ + K E LG EK D+ T TIVY+K +N Y ACP C
Sbjct: 426 KGGSFGGGNSNWKTLMEAKSENLGHGEKADYYTCVGTIVYLKKENCMYQACPT----SDC 481
Query: 533 NKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKD 592
NKKV++ +G + C++CD+ YR IL + D WVT FQE E I+G +
Sbjct: 482 NKKVIDQQNGLYRCEKCDREFPNFKYRLILSVNLADFGDNQWVTCFQETGEGILGQNCLY 541
Query: 593 LYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSET- 651
L LK D N++ F E+ + A F Y +++VK ET++DE R+K+T++ + ++ +
Sbjct: 542 LGELK--DSNEQAFEEIFQQANFRSYTCRIRVKLETYNDESRIKATMMDVKPVDHKEYSK 599
Query: 652 RFILDL 657
R I+++
Sbjct: 600 RLIMNI 605
>gi|380486564|emb|CCF38620.1| replication factor-a protein 1 [Colletotrichum higginsianum]
Length = 607
Score = 315 bits (808), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 209/667 (31%), Positives = 342/667 (51%), Gaps = 97/667 (14%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
+PVLQ + +K + + Q +R+R+VLSD + Q MLATQ N ++ L +
Sbjct: 28 VPVLQCLQIKPLAA----QTGGGAERYRIVLSDVNNYVQCMLATQVNHVIHENKLVRNCI 83
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATG 120
VR+T++ N ++ + I+I++ L+VI + +G P G PQ+
Sbjct: 84 VRITQYQANSVKGKNILIILGLEVI----EQLGTP-------------DKIGEPQA---- 122
Query: 121 VSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPE 180
+A P A P N G +F + P+P+
Sbjct: 123 -----------------FEAKPPA-------PAN-----TTIGGQNFYGVKQEETKPKPQ 153
Query: 181 FSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTA 240
S P S T Q S I PI AL+PY KWTIKARVT
Sbjct: 154 QSIPSRSAGGATGQ-------------------HGSSNIYPIEALSPYAHKWTIKARVTQ 194
Query: 241 KGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG-SLK 299
K ++R ++ G+GK+F +LLD + GEI+ T FN DQ+Y ++ G +Y +S ++
Sbjct: 195 KSDIRTWHKPSGEGKLFSVNLLD-ESGEIKATGFNEQVDQYYDLLQEGGVYYISSPCKVQ 253
Query: 300 PAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGV 359
A+K F +L ND E+ + + ++ ED +++P+ +F+F I +++ +E ++ VD+IGV
Sbjct: 254 LAKKQFTNLPNDYELTFERDTQIEKA-EDQSNVPQVRFNFCNIQELQEVEKDATVDIIGV 312
Query: 360 VSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFP 418
+ + + ++ K+ G +KR L L D + SV +T+WG + D+
Sbjct: 313 LKDVDEVSQIVSKSTGKPYEKRELTLVDDTNYSVRVTIWGKSATN--------FDAKPES 364
Query: 419 ILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSV 478
++A K +VSDF G+ + +S+ + I+PD P+AHRLK W++ G+N + S + +S+
Sbjct: 365 VVAFKGTKVSDFGGRSLSLLSSGTMSIDPDIPDAHRLKGWYDSSGRN-DTFSNHNNMVSM 423
Query: 479 G----RADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNK 534
G R D K++ Q+K+E LG E+ D+ + ATIVYIK DNF Y AC + CNK
Sbjct: 424 GNATGRKDQDKSILQVKEENLGM-EQQDYFNLKATIVYIKQDNFAYPACM----NEGCNK 478
Query: 535 KVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLY 594
KV G+G W C++CD S + +YRYI+ + DHT W++ F + IMGMSA L
Sbjct: 479 KVTETGEGAWRCEKCDVSHPKPEYRYIMSVNVCDHTNQLWLSCFDDVGRVIMGMSADQLT 538
Query: 595 SLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFI 654
+L+ ++++ K + +A K F+ + K +TF + QRV+ V+ A +Y +E +
Sbjct: 539 NLR--EEDETKMAQAFEDANCRKLNFRCRAKMDTFGESQRVRYQVMSASPIDYKAEGAKL 596
Query: 655 LDLMDKL 661
DL+ +
Sbjct: 597 ADLIKQF 603
>gi|164657638|ref|XP_001729945.1| hypothetical protein MGL_2931 [Malassezia globosa CBS 7966]
gi|159103839|gb|EDP42731.1| hypothetical protein MGL_2931 [Malassezia globosa CBS 7966]
Length = 567
Score = 315 bits (807), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 208/634 (32%), Positives = 324/634 (51%), Gaps = 81/634 (12%)
Query: 41 MLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQR 100
MLATQ LV +G L VVR+T+FT N +QNR I+I+++L+VI P R
Sbjct: 1 MLATQLKPLVENGSLDRNVVVRVTQFTSNTVQNRKILILLNLEVI--------SPALPHR 52
Query: 101 PSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPAAR-HVGSNLPPNYFKPE 159
GNPQ+ + S + +T AVP A H P P
Sbjct: 53 ----------IGNPQNIESAKS--------SADASVETKAVPGATPHADVKPPAPAMAPS 94
Query: 160 VGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRI 219
+GA + S S+ + AR +RG V KS +
Sbjct: 95 LGAQALSGSH-----------------GDSARV------------GSRG-VAKSSSGMPV 124
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
PI AL+PY KWTIKARVT K ++RH++N RGDGK+F +LLD + GEIR T FN D
Sbjct: 125 YPIDALSPYQNKWTIKARVTLKTDIRHWSNARGDGKLFSVNLLD-ESGEIRATAFNDAVD 183
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
+FY ++ K+Y +S+ + A+K F+ L N+ EI L+ S ++ C E +P +++F
Sbjct: 184 RFYPVLQENKVYFISKAKVTIAKKQFSTLPNEYEISLESGSEIEECAE-AGDVPEVKYNF 242
Query: 340 RPINDVEGMENNSVVDLIGVVS-YISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
I+ + +E N D+I ++ Y + L + +KR L L D SG SV +TLWG
Sbjct: 243 VSIDQLTTVEPNQTTDVITILDGYTDVSEILSKATQRPIKKRDLTLIDSSGMSVRMTLWG 302
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEW 458
+ + + P++A K +VSDF G+ + S++ + I PD PE+H L+ W
Sbjct: 303 SQAEN----FEKTIAGEEKPVIAFKGVKVSDFGGRSLSMFSSSTMSINPDIPESHGLRGW 358
Query: 459 FEKEGKNTQSVS-------ISRDSLSVG--RADIRKTVSQIKDEGLGTK-EKPDWITVSA 508
++ EG + S + +L+ G RA+ +T++Q+KDE LGT E+ D+ A
Sbjct: 359 YDNEGNSAHIRSYGATLDGTTASALNQGALRANEFRTLAQVKDESLGTSFERADYFNARA 418
Query: 509 TIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQD 568
++YI+ + YTACP + CNKKV+ DG W C++CD+S RYI I D
Sbjct: 419 VVLYIRPNTLYYTACP----GQDCNKKVIEESDG-WRCEKCDRSYPAPVRRYIFSANIAD 473
Query: 569 HTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEET 628
++G W++ F E ++GM+A +L S++ ++N+ +F V+ F + K+ET
Sbjct: 474 YSGQIWISGFNEVGVALLGMTADELDSIR--NENEGEFKAVLTRVIGRVMDFHCRAKQET 531
Query: 629 FSDEQRVKSTVVKAERYNYSSETRFILDLMDKLK 662
F+D RV+ TV + + N++ ++D + L+
Sbjct: 532 FNDTNRVRYTVTQIQPLNFAKAGHELVDKIHALQ 565
>gi|296416099|ref|XP_002837718.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633601|emb|CAZ81909.1| unnamed protein product [Tuber melanosporum]
Length = 614
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 196/657 (29%), Positives = 320/657 (48%), Gaps = 80/657 (12%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P+LQV+ +K + + Q +R+R+V SD Q MLATQ V G ++ G V
Sbjct: 28 PILQVLQIKSLAA-----QPGAPERYRVVFSDTQNFIQSMLATQATAHVLDGSIEKGCFV 82
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIID--KCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
+LT + N ++++ I+IV+ L+V+ K + IG+PV + + P A+
Sbjct: 83 QLTNYQANKVKDKKILIVIGLEVLTQYGKQEKIGEPVSLEASQRPQAPDRARAAQNEKAS 142
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
S R + P + VPA + +P A S
Sbjct: 143 ATSFY---GNRPAPAPAEQRGVPARQA----------QPTTTARSS-------------- 175
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVT 239
AP P++Y PI +L+PY +WTI+ARVT
Sbjct: 176 ---------------APSATRPNIY----------------PIESLSPYQNRWTIRARVT 204
Query: 240 AKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLK 299
K ++ + N DG++F+ LLD + GE+R T FN D FY ++ G++Y +S +
Sbjct: 205 YKSPIKLWQNSNRDGRLFNVTLLD-ESGEVRATGFNDQVDSFYEVLQEGQVYYISNCKVN 263
Query: 300 PAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGV 359
A+K F++++ND E+ + + ++ C + D IP +F+F +++E ++N+ ++D+IGV
Sbjct: 264 FAKKQFSNINNDYELAFERNTEIEKCNDVDDGIPMARFNFVQFSELESIQNDGIIDVIGV 323
Query: 360 VSYISPTASLMRKNGTET-QKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFP 418
+ + AS+ KN ++ KR + L D SG SV +T WG D +L
Sbjct: 324 IKEVGEVASIQSKNTQKSYTKRDVTLVDKSGYSVHITTWGKSAEDWETQLDE-------- 375
Query: 419 ILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSV 478
I+A K +VS++ G+ + + ++ + + PD E+H L+ W++ +G+ S S +V
Sbjct: 376 IVAFKGVKVSEYGGRSLSMLHSSTMTVNPDIDESHALRGWYDGQGRGETFQSHHTGSSAV 435
Query: 479 GRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMN 538
D KT+SQI+DE LG E PD T ATIVYIK +NF Y AC CNKKV+
Sbjct: 436 RTNDPYKTLSQIRDENLGMGEDPDIFTTKATIVYIKNENFSYPACLT----PKCNKKVVE 491
Query: 539 NGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKY 598
+G+W C++CD + C +RYI+ D GL W + F + IMGM+A +L L
Sbjct: 492 IAEGQWKCEKCDITHPNCQHRYIMTISCSDAFGLAWFSCFDDVGIMIMGMTADELVELNN 551
Query: 599 VDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
F + A Y+F+ + K + +QRV+ V+ A N++ E ++
Sbjct: 552 -QSGGPAFADAFLQANCKAYVFRCRAKMDVSQGQQRVRYQVLNAAPVNFALEAHKLI 607
>gi|110756775|ref|XP_001121722.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit isoform
1 [Apis mellifera]
Length = 597
Score = 314 bits (804), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 207/656 (31%), Positives = 326/656 (49%), Gaps = 109/656 (16%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQ-GMLATQRNELVTSGLLQIGSV 60
PVLQ++ K + S +R+R+++SDG R MLATQ N ++T +L S+
Sbjct: 21 PVLQILGHKKLSS------SSSGERYRLLVSDGKRVNSFTMLATQLNSMITENILTEFSI 74
Query: 61 VRLTKFTCNVI----QNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQS 116
++ ++ +++ + + ++++++ I VP ++ G GNP +
Sbjct: 75 CQINRYAISMVNNAGKQKRVMVILN----------IDLKVPG------DEVGHKIGNP-T 117
Query: 117 NATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSN 176
NA D D+ P A ++ + S Q +
Sbjct: 118 NA----------------EADGDSKPQA--------------QIAQSAQSVVPQQQTNLK 147
Query: 177 PRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKA 236
P + +N + TP I AL+PY +W IKA
Sbjct: 148 PNHNMQQSSTNNISTTP----------------------------IVALSPYQNRWVIKA 179
Query: 237 RVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG 296
RV +K +R ++N RG+GK+F DL+D + GEIR T F D+FY +E GK+Y +SR
Sbjct: 180 RVVSKSNIRTWSNSRGEGKLFSMDLID-ESGEIRCTAFRNECDKFYDMLEIGKVYYISRA 238
Query: 297 SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDL 356
+LKPA K FN+L ND E+ L S + C++ IP QF F IND+ E N ++++
Sbjct: 239 TLKPANKQFNNLKNDYEMTLIGDSEIIPCHDSGDDIPSLQFDFVSINDINKKEQNDIMNI 298
Query: 357 IGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSG 415
+G+V Y L +N G E +KR + L D S +V LTLWG+ + D
Sbjct: 299 LGIVKYSGDLQILTSRNSGRELRKRDVSLVDESNTTVTLTLWGSQAEE--------FDGS 350
Query: 416 VFPILAVKAGRVSDFN-GKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRD 474
P+LAVK R+++FN GK + T+S+T L I+PD P AHRL+ WF G+N ++ S+S+
Sbjct: 351 SNPVLAVKGARITEFNGGKNLSTLSSTVLQIDPDLPAAHRLRGWFNTMGRNEEATSLSKP 410
Query: 475 -SLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCN 533
+ G +++ T + KD LG K D TV AT+ I+ +N Y ACP C
Sbjct: 411 FGSTTGVSELWITFQEAKDMELGYK-NSDIYTVKATLNMIRMENAIYKACP----SENCK 465
Query: 534 KKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDL 593
KK+++ + + C++CD+ YR + + D T WVTAF + AE+I+ +A++L
Sbjct: 466 KKLVDQANDMYRCEKCDKEYPNYRYRLLANISLADWTDNQWVTAFNDEAEKILSSTAQEL 525
Query: 594 YSLKY--VDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNY 647
LK +D EKF E ATF ++FK++VK E F DE R+++T + +Y
Sbjct: 526 GELKENDIDAYSEKFSE----ATFKSFIFKIRVKVEVFGDENRLRATCLGVSPMDY 577
>gi|149053388|gb|EDM05205.1| replication protein A1 [Rattus norvegicus]
Length = 583
Score = 314 bits (804), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 174/446 (39%), Positives = 265/446 (59%), Gaps = 22/446 (4%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
S+++PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D + GEIR T FN
Sbjct: 151 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNE 209
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
D+F+ +E K+Y S+G+LK A K F+ + ND E+ + + V C ED +P Q
Sbjct: 210 QVDKFFPLIEVNKVYYFSKGTLKIANKQFSAVKNDYEMTFNNETSVLPC-EDGHHLPTVQ 268
Query: 337 FHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F I D+E +S+VD+IG+ SY T ++ N E KR + L DMSG+ V T
Sbjct: 269 FDFTGIGDLESKSKDSLVDIIGICKSYEDATKITVKSNNREVAKRNICLMDMSGKVVTAT 328
Query: 396 LWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
LWG + DG R P++A+K RVSDF G+ + +S++ + + PD PEA++
Sbjct: 329 LWGEDADKFDGSRQ---------PVMAIKGARVSDFGGRSLSVLSSSTVLVNPDIPEAYK 379
Query: 455 LKEWFEKEGKNTQSVSIS--RDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVY 512
L+ WF+ EG+ VSIS R + G KT+ + K E LG +K D+ + AT+V+
Sbjct: 380 LRGWFDSEGQALDGVSISDLRSGGTGGSNTNWKTLYEAKSENLGQGDKADYFSTVATVVF 439
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
++ +N Y ACP + CNKKV++ +G + C++CD+ YR IL I D
Sbjct: 440 LRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSVNIADFQEN 495
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
WVT FQE AE I+G + L LK ++N++ F EV +NA F + F+++VK ET++DE
Sbjct: 496 QWVTCFQESAEAILGQNTVYLGELK--EKNEQAFEEVFQNANFRSFTFRIRVKLETYNDE 553
Query: 633 QRVKSTVVKAERYNYSSET-RFILDL 657
R+K+TV+ + +Y + R I+++
Sbjct: 554 SRIKATVIDVKPVDYRDYSKRLIMNI 579
>gi|440637381|gb|ELR07300.1| hypothetical protein GMDG_02480 [Geomyces destructans 20631-21]
Length = 608
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 215/663 (32%), Positives = 333/663 (50%), Gaps = 95/663 (14%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
+PV Q + +K + S Q + +R+R+VLSD Q MLAT N + L+ GS+
Sbjct: 31 VPVCQCVQIKPLAS-----QGNGAERYRVVLSDTKNFVQSMLATGANHFIHDQKLKKGSL 85
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATG 120
VRL +F N ++ + I+++MD+DV+ + G+P G+PQ+
Sbjct: 86 VRLKQFQANALKGKRILVIMDIDVLAE----FGEP-------------DKIGDPQA---- 124
Query: 121 VSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPE 180
+V D KP GA SG A F +P
Sbjct: 125 --------LKVKDEEEDV------------------KPAPGAVSG------AGFYGNKPA 152
Query: 181 FSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTA 240
S +RT PS A +G I PI L+PY KWTIKARV+
Sbjct: 153 QQPAQQSLPSRT-------GPSSSAGQG---------NIYPIETLSPYAHKWTIKARVSN 196
Query: 241 KGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG-SLK 299
K E+R ++ Q G+GK+F +LLD + GEI+ T FN DQ Y + G +Y +S ++
Sbjct: 197 KSEIRTWHKQSGEGKLFSVNLLD-ESGEIKATGFNEQCDQLYDLFQEGSVYYISSPCRVQ 255
Query: 300 PAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGV 359
A+K F +L ND E+ D + V+ ED ++P+ +F+F I ++ +E ++ +D+IGV
Sbjct: 256 LAKKQFTNLPNDYELTFDRETKVEKA-EDQENVPQVRFNFTDIASLQTVEKDTTIDVIGV 314
Query: 360 VSYISPTASLMRKNGTET-QKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFP 418
+ ++ ++ K+ ++ KR L L D S SV LT+WG + D+
Sbjct: 315 LKEVADVTQIVSKSTSKPYDKRELTLVDDSDFSVRLTIWG--------KTAVSFDAQPES 366
Query: 419 ILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVS---ISRDS 475
I+A K +VSDF G+ + +S+ + ++PD EAH+L+ W++ G++ S ++
Sbjct: 367 IVAFKGAKVSDFGGRSLSLLSSGSMTVDPDIQEAHKLRGWYDTHGRSNTFASHSGMASAG 426
Query: 476 LSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKK 535
+ GR D TV+++ ++ LG E D+ + ATIVYIK +NF Y AC CNKK
Sbjct: 427 AAGGRQDPVMTVAKVYEDSLGMSESTDYFSTKATIVYIKQENFAYPACL----SEGCNKK 482
Query: 536 VMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYS 595
V + GDG W C++CD + + +YRYI+ + DHTG W++ F + IMGMSA L +
Sbjct: 483 VTDMGDGTWRCEKCDITHPKPEYRYIMSLNVNDHTGQLWLSCFDDVGRLIMGMSADQLMA 542
Query: 596 LKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
LK D D G A LFK + K ++F D+QRV+ V A NYS E + +
Sbjct: 543 LK--DSEDPAAGRAFEEANCKTMLFKCRAKMDSFQDQQRVRYQVTAASPVNYSQEAQKLA 600
Query: 656 DLM 658
+L+
Sbjct: 601 ELI 603
>gi|349605285|gb|AEQ00575.1| Replication protein A 70 kDa DNA-binding subunit-like protein,
partial [Equus caballus]
Length = 481
Score = 313 bits (801), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 171/442 (38%), Positives = 262/442 (59%), Gaps = 19/442 (4%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
++++PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D + GEIR T FN
Sbjct: 47 AKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNE 105
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
AD+F+ ++ K+Y S+G+LK A K F + ND E+ + + V C EDD +P Q
Sbjct: 106 QADKFFPLLDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC-EDDHHLPTVQ 164
Query: 337 FHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F I ++E +S+VD+IG+ SY T ++ N E KR ++L D SG+ V T
Sbjct: 165 FDFTGIGELENKPKDSLVDIIGICKSYEDATKITVKSNNREVSKRNIYLMDTSGKVVTTT 224
Query: 396 LWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRL 455
LWG +D R D P++A+K RVSDF G+ + +S++ + + PD EA++L
Sbjct: 225 LWG----EDADRF----DGSRQPVMAIKGARVSDFGGRSLSVLSSSTVIMNPDISEAYKL 276
Query: 456 KEWFEKEGKNTQSVSIS--RDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYI 513
+ WF+ EG+ VSIS + + G KT+ ++K E LG +K D+ + AT+VY+
Sbjct: 277 RGWFDSEGQALDGVSISDLKGGGTGGSNTNWKTLYEVKSENLGQGDKADYFSSVATVVYL 336
Query: 514 KCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLT 573
+ +N Y ACP + CNKKV++ +G + C++CD YR IL I D
Sbjct: 337 RKENCMYQACP----SQDCNKKVIDQQNGLYRCEKCDSEFPSFKYRMILSVNIADFQENQ 392
Query: 574 WVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQ 633
WVT FQE AE I+G + L LK ++N++ F EV +NA F + F+++VK ETF+DE
Sbjct: 393 WVTCFQESAEAILGQNTAYLGELK--EKNEQAFEEVFQNANFRSFTFRIRVKLETFNDES 450
Query: 634 RVKSTVVKAERYNYSSETRFIL 655
R+K+TV+ + +Y R ++
Sbjct: 451 RIKATVMDVKPVDYREYGRRLI 472
>gi|302690362|ref|XP_003034860.1| hypothetical protein SCHCODRAFT_50382 [Schizophyllum commune H4-8]
gi|300108556|gb|EFI99957.1| hypothetical protein SCHCODRAFT_50382 [Schizophyllum commune H4-8]
Length = 628
Score = 312 bits (799), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 207/675 (30%), Positives = 344/675 (50%), Gaps = 95/675 (14%)
Query: 3 VLQVMDLKLVVSKQQQQQQH-------QQQRFRMVLSDGSRSQQGMLATQRNELVTSGLL 55
VLQ + +K + ++ +Q Q +R R++LSDG Q MLATQ N++ +
Sbjct: 29 VLQALSVKSINEGKEGKQGEKPAPKSGQPERLRIILSDGEWFMQAMLATQLNDVG----I 84
Query: 56 QIGSVVRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQ 115
+ S+VR+++ + N++QNR +VIV+ L+ I+ CD + + P+ +QP +
Sbjct: 85 EKNSIVRISRASRNIVQNRRLVIVLGLE-IVQHCDEKLR----RDPNDEKQPYT------ 133
Query: 116 SNATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFS 175
LP Y K + +G
Sbjct: 134 -----------------------------------LPSEYLKVKPDGENGQ--------- 149
Query: 176 NPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPS--RIIPIAALNPYMGKWT 233
+P P+ S+P A+ T P +P + A K+ P+ I PI L+PY WT
Sbjct: 150 SPAPQ-SKPAAA--PSTSTVPRTATPQLPAQPHRDSKNTAPNGRSIYPIEGLSPYQNNWT 206
Query: 234 IKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLV 293
IKARVT K ++R ++NQRG+G++F+ L+D D GEIR T FN D+ Y + E GK+Y V
Sbjct: 207 IKARVTQKSDIRRWSNQRGEGRLFNVTLMD-DTGEIRATGFNQAVDELYDKFEEGKVYYV 265
Query: 294 SRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSV 353
S+ + A+K F++++ND E+ L+ ++ V+ C E A +P +++F ++ ++ + +S
Sbjct: 266 SKARVNLAKKKFSNVNNDYELSLERSTEVEPCLEA-ADVPTIKYNFVKLDALQEVPKDSN 324
Query: 354 VDLIGVVSYISPTASLMRKNGTET-QKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMC 412
D+IGVV + + + K T +KR L L D +G SV +TLWGN +
Sbjct: 325 CDVIGVVKEVGELSEITTKTTNRTMKKRELTLVDDTGYSVRVTLWGNTA-------EKYE 377
Query: 413 DSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSIS 472
+ G P++A K +V DF G+ + + ++ +F+ PD EA L+ WF+ +GK Q S +
Sbjct: 378 EEG-HPVIAFKGVKVGDFGGRSLSMLMSSMMFVNPDTTEAFHLRGWFDDDGKTLQFSSHT 436
Query: 473 RDSLSVGRA----DIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIG 528
+ D ++T+ +IK+ LG ++PD+ + ATI++IK +NF Y AC
Sbjct: 437 SGGGAGTGRGFDRDDQRTLMEIKNANLGMGDQPDYFSSRATIMHIKDNNFAYPAC----R 492
Query: 529 DRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGM 588
CNKKV+ NG G W C++C+ S DYR++LQ + D G W F + + I
Sbjct: 493 SPDCNKKVVENGPGEWRCEKCNVSHSSPDYRFMLQLAVADLHGQAWFQGFNDAGQVIFNR 552
Query: 589 SAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYS 648
SA ++ +K D D+ F A + + F + K +T++DE RV+ + K E ++
Sbjct: 553 SANEIMQMKSGD--DDGFLRAFAQANYQAFNFNCRAKADTWNDETRVRYGITKVEPVDFV 610
Query: 649 SETRFILDLMDKLKS 663
E ++ + DKL+S
Sbjct: 611 KEAQY---MRDKLQS 622
>gi|315057045|ref|XP_003177897.1| replication factor-A protein 1 [Arthroderma gypseum CBS 118893]
gi|311339743|gb|EFQ98945.1| replication factor-A protein 1 [Arthroderma gypseum CBS 118893]
Length = 598
Score = 311 bits (797), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 204/657 (31%), Positives = 330/657 (50%), Gaps = 103/657 (15%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P+LQ + +K VV ++Q R+ +V SD + + ML TQ N VT G+L+ GS V
Sbjct: 24 PILQCLRIKPVVVREQD-------RYGVVFSDVNHFVRTMLPTQLNNYVTDGILRRGSFV 76
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVI--IDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
RLT F +V++ + ++I+M LDV+ + + + IG P P + P S ++ G + SN
Sbjct: 77 RLTNFQVSVVKGKHLLIIMGLDVLSALGEAERIGDPKPLE-PKSGDEMGGQSTTLSSNEF 135
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
+ Q HN PP +F+ + PRP
Sbjct: 136 YNAPQTHN------------------------PPQHFQ---------------NVQRPRP 156
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMG-KWTIKARV 238
+ P A+ I I AL+P+ KWTIKAR
Sbjct: 157 SGTAPNAN-------------------------------IFSIEALSPFANNKWTIKARC 185
Query: 239 TAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG-S 297
T K ++ + N G+GK+F +LLD D GEIR T F D Y E G +Y +S +
Sbjct: 186 THKSNIKTWKNTFGEGKLFSVNLLD-DSGEIRATAFKDQCDLLYPVFEEGAVYYISSPCT 244
Query: 298 LKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLI 357
+K A+K F++++ND E+ D ++V+ ED +P+ +F+F + +++ ++ + +D++
Sbjct: 245 VKMAKKEFSNVNNDYELTFDRDTVVEKA-EDQNDVPQIRFNFTSLGNLQSIDKGTTIDVL 303
Query: 358 GVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGV 416
GV+ + T+ + K +G KR L L D SG SV LT+WGN D+
Sbjct: 304 GVLKDVDTTSQVTSKTSGKPYDKRELTLVDNSGFSVRLTVWGNTAT--------TFDTPP 355
Query: 417 FPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSL 476
++A K +VSDF G+ + +S+ + ++PD EAHRLK W++ +GK + S
Sbjct: 356 ESVVAFKGVKVSDFGGRTLSLLSSGTITVDPDIEEAHRLKGWYDAQGKANSFTAYSSGVT 415
Query: 477 SVGRAD--IRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPC-N 533
G KT+S+I+DE + + + + + AT++++K DN CY ACP + C N
Sbjct: 416 GGGGGSWPTFKTISEIRDEEIPSADSFENFALKATVIHVK-DNLCYPACP----NEACKN 470
Query: 534 KKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDL 593
KKV +WHC+RC++S YRYIL DHTG W++ F E + I GM+A +L
Sbjct: 471 KKVTRGDSDQWHCERCERSYANPKYRYILSLNASDHTGQIWLSCFDEAGQMIFGMTADEL 530
Query: 594 YSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSE 650
+K +++D E+ + AT+ + FK + K +T+ ++QR + V A +YS+E
Sbjct: 531 MRIK--EEDDAAANEITKGATYCTWNFKCRAKLDTYQEQQRTRYNVYAATPIDYSTE 585
>gi|328770102|gb|EGF80144.1| hypothetical protein BATDEDRAFT_88559 [Batrachochytrium
dendrobatidis JAM81]
Length = 643
Score = 311 bits (797), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 197/662 (29%), Positives = 336/662 (50%), Gaps = 65/662 (9%)
Query: 3 VLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVR 62
++QV+++K V + Q Q +R+R+++SDG Q M+A+Q NELV+SG + +++
Sbjct: 30 IVQVLNIKKVPNGQGQPGM---ERYRLMISDGVNYIQSMIASQLNELVSSGSITKFGIIK 86
Query: 63 LTKFTCNVIQNRMIVIVMDLDVII---DKCDPIGKPVPAQRPSSNEQPGSVTGNPQ-SNA 118
L K+ CN + ++ I+I++ L+ + D +G PV + + P + T P +A
Sbjct: 87 LQKYICNTVSSKRILIILALENLTPFNDTIQRVGNPVSLDGNTVTD-PNAATHAPAVGSA 145
Query: 119 TGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPR 178
+ QH S P A LP NY NQ A R
Sbjct: 146 STFGQQHAPALPTSSFSRQQGQQPMA------LPSNY-------------NQQAG----R 182
Query: 179 PEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARV 238
S +SN PY S N G I LNPY KWTIK +
Sbjct: 183 SALSGSGSSN------MPYGGGASTVNNGDTAGP------YFAIKTLNPYQNKWTIKGVI 230
Query: 239 TAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSL 298
KG +R +N +G++F+F + D D G+IR T FN D FY ++ G+ Y++S+ +
Sbjct: 231 INKGSVRTWNKAGREGRLFNFTISD-DSGDIRCTGFNEAVDMFYESIQEGQAYVISKAMI 289
Query: 299 KPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIG 358
K + FN +D E+ +D + + +C D SIP+ +++ ++ + +E ++V+D++
Sbjct: 290 KVSNPAFNKGGHDYEMTIDPHTSITVC-NDPKSIPQIKYNALTLDRLLEVEKDAVIDILA 348
Query: 359 VVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFP 418
VV P + + K + +KR L++ D SG V LTLWG+ +H + P
Sbjct: 349 VVKECFPVSEITTKANNKLKKRDLNIVDESGWLVRLTLWGS----QAETFEHSDN----P 400
Query: 419 ILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSV 478
++ +K RV DF G+ + ++ L + P +A RL+ WF+ + + + S+ S V
Sbjct: 401 VIGIKNARVGDFGGRTLSVAMSSTLTLNPTMQDAFRLRGWFDAKASSIDFHTYSKSSSGV 460
Query: 479 GRADIR----KTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPC-N 533
+ KT+ QI+D LG EKPD++++ A I + K +N Y ACP + C N
Sbjct: 461 TSGNSTHSNLKTIQQIQDANLGNGEKPDYVSLRAFISFAKRENLWYPACP----NEACRN 516
Query: 534 KKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDL 593
KKV+ G W C++CD + YRYI F + D+TG TW+ AF E E+++G +A ++
Sbjct: 517 KKVVEIG-SEWRCEKCDSNYPHPVYRYITSFSVSDYTGQTWLQAFNETVEKVLGKTANEM 575
Query: 594 YSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRF 653
L VD + ++F ++ A + +Y+F ++ K E + D ++ + T+V+A+ +Y++ +R
Sbjct: 576 QKL--VDTDKDEFDRIIEQAIYQEYVFDVRAKAEMYQDAKKTRLTIVEAKEVDYAAASRE 633
Query: 654 IL 655
+L
Sbjct: 634 ML 635
>gi|388856821|emb|CCF49608.1| probable Replication factor-A protein 1 [Ustilago hordei]
Length = 627
Score = 311 bits (797), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 162/454 (35%), Positives = 263/454 (57%), Gaps = 30/454 (6%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI L+PY +WTIKARVT+K ++RH++NQRG+GK+F +LLD D GEI+ T FN
Sbjct: 186 IYPIEGLSPYQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLD-DSGEIKATGFNDTV 244
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D+FY ++ +YL+S+ + A+K F++L N+ EI + ++ ++ C D +P ++
Sbjct: 245 DRFYSLLKENHVYLISKAKVNIAKKQFSNLQNEYEITFENSTEIEEC-TDATDVPEVKYE 303
Query: 339 FRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLW 397
F IN++E +E N D+IGV+ SY + + + + QKR L L D G+SV LTLW
Sbjct: 304 FVRINELESVEPNQTCDVIGVLDSYGELSEIVSKASQRPVQKRELTLVDQGGKSVRLTLW 363
Query: 398 G----NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAH 453
G F N+ G+ + P++A K +V DF G+ + S++ + I PD E+H
Sbjct: 364 GKNAETFPNNAGVDEK--------PVIAFKGVKVGDFGGRSLSMFSSSTMLINPDITESH 415
Query: 454 RLKEWFEKEGKNTQSVSISRDSLSVGRADI---------RKTVSQIKDEGLGTKEKPDWI 504
L+ W++ +G Q + S + G R+T++Q+KDE LG EKPD+
Sbjct: 416 VLRGWYDNDGARAQFEAFSNAGVGGGALGAAGAGGNMAERRTIAQVKDENLGMTEKPDYF 475
Query: 505 TVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQF 564
+ AT+VYIK +N YTACP CNKKV + + W C++CD+S +YRYIL
Sbjct: 476 NIRATVVYIKQENLYYTACP----SDGCNKKVTLDHENNWRCEKCDRSYEAPEYRYILST 531
Query: 565 QIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKV 624
+ D TG W++ F E A +++GMSA +L+ L+ + ++ ++ + A YLF +
Sbjct: 532 NVADATGQIWLSGFNEDATKLIGMSAGELHQLR--ENSESEYSAALHRAANRMYLFNCRA 589
Query: 625 KEETFSDEQRVKSTVVKAERYNYSSETRFILDLM 658
K +TF+D+ RV+ T+ ++ +++ ++D +
Sbjct: 590 KMDTFNDQTRVRYTISRSAPVDFAKAGAELVDAI 623
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P+ Q++ +K + + R+R++LSDG Q MLA+Q+ +V SG L+ +V
Sbjct: 27 PICQILSIK-KIQASATSASNVGDRYRIILSDGVHYAQSMLASQKRSMVESGELEKHCLV 85
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIID-KCDPIGKP 95
R++++ N +QNR I+I++DL+V D +G P
Sbjct: 86 RISQYASNSVQNRRILILLDLEVAHKPTADRLGSP 120
>gi|312371186|gb|EFR19433.1| hypothetical protein AND_22425 [Anopheles darlingi]
Length = 621
Score = 311 bits (796), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 209/672 (31%), Positives = 339/672 (50%), Gaps = 91/672 (13%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDG-SRSQQGMLATQRNELVTSGLLQIGSV 60
PVLQV+ K + S +Q + RFR+++SDG S MLATQ N++ G L ++
Sbjct: 23 PVLQVIGSKRIASSGEQSE-----RFRLLISDGKSLYSYAMLATQLNDMHRQGKLAENTI 77
Query: 61 VRLTKFTCNVIQ-----NRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQ 115
+R+ ++T +V+ + ++I+++L V+ D G V G GNPQ
Sbjct: 78 IRIDRYTTSVVNRNEKGEKRVLIIVELTVLKD-----GALV-----------GEKIGNPQ 121
Query: 116 SNATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFS 175
TD VPA++ S VG + S+ +AS
Sbjct: 122 PM--------------------TD-VPASQTQNS----------VGGSASSYEKPAAS-- 148
Query: 176 NPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRII-PIAALNPYMGKWTI 234
SRP ++ T Y + S + G V + + + PI++L+PY KW I
Sbjct: 149 ------SRPSETSGLST----YGSNRSAGGSNGTVAGASLSDTLTHPISSLSPYQNKWVI 198
Query: 235 KARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVS 294
KARV +K +R ++N +G+GK+F D++D + GEIRVT F D++Y +E K+Y +S
Sbjct: 199 KARVMSKSGIRTWSNAKGEGKLFSMDVMD-ESGEIRVTAFKEQCDRYYDMIEVDKVYFIS 257
Query: 295 RGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVV 354
+ LKPA K +++L ND E+ + ++VQ C + D S+P Q++F PI + +E N+ V
Sbjct: 258 KCQLKPANKQYSNLKNDYEMTMTNDTIVQECKDKDGSMPEIQYNFVPIAQIANLEPNATV 317
Query: 355 DLIGVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCD 413
D+IGV S K +G E +KR L D S +V+LTLWG DD +
Sbjct: 318 DVIGVCKEASEVVQFTAKTSGRELRKREATLVDSSNAAVQLTLWG----DDAQNFPASSN 373
Query: 414 SGVFPILAVKAGRVSDF-NGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSIS 472
P++ V+ RVS+F GK +G I + + + PD AHR++ WFE G++ S+S
Sbjct: 374 ----PVVLVRGARVSEFGGGKTLGLIGGSVMKLNPDMEAAHRVRGWFENGGRDASLASVS 429
Query: 473 RDSLSVGRADIRK---TVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGD 529
+ + A + T + D LG +KPD+ V A I IK N Y ACP
Sbjct: 430 ARTGAGAGAGLNTEWLTFREASDRSLGAGDKPDYFQVKAMIHTIKSQNAVYKACP----Q 485
Query: 530 RPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMS 589
CNKKV++ +G++ C++C+ YR ++ I D T WVT F E AEE+ G S
Sbjct: 486 ADCNKKVIDQDNGQYRCEKCNAEFPNFKYRLLVNMLIGDWTSNRWVTMFTELAEEVFGKS 545
Query: 590 AKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSS 649
++++ S+ ++ E+ ++ + F ++FKL+ K E ++++ R K+T V A N+
Sbjct: 546 SQEIGSM--LEFQTEEAEKLFTSMCFKSFIFKLRTKVEFYNEQARNKTTAVSAAPVNHKE 603
Query: 650 ETRFILDLMDKL 661
++ + ++
Sbjct: 604 YNALLIKSIQEM 615
>gi|392567006|gb|EIW60181.1| replication factor-a protein [Trametes versicolor FP-101664 SS1]
Length = 561
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 196/642 (30%), Positives = 328/642 (51%), Gaps = 95/642 (14%)
Query: 26 RFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNRMIVIVMDLDVI 85
R+R+++SDG Q MLATQ N LV + S+ + KFTCN++Q + ++I++ L V+
Sbjct: 3 RYRVIVSDGEHFLQSMLATQLNHLVEEEQILKHSIAVIEKFTCNLVQGKKLLIILALRVV 62
Query: 86 IDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPAAR 145
+ + I GNP V +Q + + AV A
Sbjct: 63 QKEAEKI-------------------GNP------VGIQARAGGSIEAQASPSAAVTPA- 96
Query: 146 HVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYA 205
P KP V A S Q
Sbjct: 97 ------PAASTKPAVSAAPAQSSRQPTQ-------------------------------G 119
Query: 206 NRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSD 265
NRG G++ I PI +L+PY WTIKARV +K E+R ++NQRG+GK+F+ L+D +
Sbjct: 120 NRG--GRTA----IYPIESLSPYQNHWTIKARVISKSEIRTWSNQRGEGKLFNITLMD-E 172
Query: 266 GGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLC 325
GEIR T FNA D+ Y +++ GK+Y +S+ + A+K F+++ N+ E+ L+ + ++ C
Sbjct: 173 SGEIRATGFNATVDELYDRIQEGKVYFISKAKVNLAKKKFSNIANEYELALERNTEIEEC 232
Query: 326 YEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRK-NGTETQKRTLHL 384
D A +P +F+F PI +++ + ++V D++GVV + +S+ K + K+ L +
Sbjct: 233 -PDAADVPTVKFNFTPIANLQEIAKDAVCDIVGVVKEVGELSSITSKATSKQIPKKELTV 291
Query: 385 RDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLF 444
D SG SV++TLWG + + +P++A K +V DF G+ + +S++ L
Sbjct: 292 VDASGFSVKVTLWG--------KQAEQYNEVDYPVIAFKGAKVGDFQGRSLSMMSSSSLI 343
Query: 445 IEPDFPEAHRLKEWFEKEG------KNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTK 498
I PD PEAH L+ W++ G +T ++S S +S RA+IR +++ +K LG
Sbjct: 344 INPDIPEAHHLRGWYDAAGAEQTYQSHTNTMS-SGGGVSFDRAEIR-SLNDVKTSELGMS 401
Query: 499 EKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDY 558
+K D + ATI++IK DN Y ACP + CNKKV+ GD W C+ CD+S + ++
Sbjct: 402 DKVDTFSSRATIMHIKGDNIAYPACP----SQGCNKKVVLMGDS-WRCENCDKSYPQPEH 456
Query: 559 RYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKY 618
RYI+ + D++G W F + + GM A DL ++K +++D +F V+ T Y
Sbjct: 457 RYIVPMAVADYSGQAWFQGFNDVGLIVFGMPANDLVAIK--ERDDTEFNRVLEGTIGTTY 514
Query: 619 LFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDK 660
F + K++ ++D+ RV+ + + +Y E ++ +L+ +
Sbjct: 515 NFACRAKQDNYNDQARVRYGISRILPLDYREEATYLANLLRR 556
>gi|452819200|gb|EME26268.1| replication factor A1 [Galdieria sulphuraria]
Length = 648
Score = 309 bits (791), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 216/665 (32%), Positives = 338/665 (50%), Gaps = 60/665 (9%)
Query: 3 VLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVR 62
VLQV++LK ++ Q Q +R+RMVLSD QQ ML+TQ N LV +Q G +VR
Sbjct: 25 VLQVLELKKIIPSGQNVPQ--TERYRMVLSDSRHYQQSMLSTQLNALVREQKVQTGCLVR 82
Query: 63 LTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVS 122
L ++ N + + I+IV++L+ + + IG PV ++ + N Q G G
Sbjct: 83 LLEYVVNDVAQKRIIIVLNLEPVTGPLEKIGNPVNVEQ-AQNVQTG----------LGSK 131
Query: 123 LQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFS 182
++ + + + S++P TD L PE F N+ S + S
Sbjct: 132 MRDNLSEQPSRVPSSTD-----------LKQPQTLPE-------FPNKITRESE-KHNAS 172
Query: 183 RPYASNYARTPQAPYMQSPSMYANRGLVGKSE--VPSRIIP---IAALNPYMGKWTIKAR 237
P ++N Q+ QS + + G V K E V S + P IA+LNPY KW IK R
Sbjct: 173 VPLSANSVNI-QSNRTQSFHVKSESGPVVKMEPFVGSNLEPVQSIASLNPYQNKWIIKGR 231
Query: 238 VTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGS 297
V+++GE+RHY N +G+G VF F+++DS I+VT F A Y +E GK+Y +S+G
Sbjct: 232 VSSRGEIRHYQNAKGEGSVFSFEIMDSTAS-IKVTAFRENASSLYKLIEIGKVYRISKGV 290
Query: 298 LKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLI 357
LKPA K FN + E+ D + V + ED +P FHF I ++E + D++
Sbjct: 291 LKPADKRFNKTSFEYEMIADNNTEV-VPVEDVGEVPNVIFHFTKIANLENIVAGQFCDVL 349
Query: 358 GVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGV 416
G+V +S +S++ R G KRT+ L D S +++ LTLW + + L H +
Sbjct: 350 GIVKDVSELSSVVSRTTGITLAKRTVVLMDDSLKTIRLTLWKDIAEN----LLHSSEGN- 404
Query: 417 FPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSIS-RDS 475
PIL K R DFNG + + + PD EAH L+ W+E GK+ ++ S+ S
Sbjct: 405 -PILLCKGVRRGDFNGISLDATVQSCFEVNPDIAEAHELRGWYETTGKHQETSSLEGATS 463
Query: 476 LSVGRADIRKTVSQIKDEG---LGTKEKPDWITVSATIVYIKCD-NFCYTACPIMIGDRP 531
LS+G RKT+ Q +E L + V + YI+ + YTA P
Sbjct: 464 LSLGNTKERKTILQASEEDIPKLINDPRGVQFIVRGYLHYIRKEGTLWYTASP------D 517
Query: 532 CNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAK 591
NKKV + RW CD + C+YRYIL IQD TG AF + ++G SA+
Sbjct: 518 DNKKVTKLDENRWVCDATGKEYSYCNYRYILSVAIQDATGSLNANAFDDVGSRLIGRSAE 577
Query: 592 DLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSET 651
+L ++ D+ + F ++ + F ++F+++ K+ T++DE R++ +V E ++SSE+
Sbjct: 578 ELAAIYERDRAE--FDAIIDDVLFKPFIFRIRAKQNTWNDELRLRYHIVNVEPIHFSSES 635
Query: 652 RFILD 656
+ +L+
Sbjct: 636 QLLLN 640
>gi|242041767|ref|XP_002468278.1| hypothetical protein SORBIDRAFT_01g042890 [Sorghum bicolor]
gi|241922132|gb|EER95276.1| hypothetical protein SORBIDRAFT_01g042890 [Sorghum bicolor]
Length = 623
Score = 308 bits (789), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 217/677 (32%), Positives = 340/677 (50%), Gaps = 101/677 (14%)
Query: 3 VLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVR 62
V+QV+DLK + + RF + +DG + M T V SG L+ ++R
Sbjct: 31 VVQVLDLKSIGTGS---------RFSFMATDGKDKIKAMFPTSFASEVRSGNLKNLGLIR 81
Query: 63 LTKFTCNVIQ--NRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATG 120
+ +TCN + N ++IV+ KC+ + + + A+ + G +
Sbjct: 82 ILDYTCNAVNGNNGKVLIVI-------KCELVCQALDAE----------INGEAKKEEPP 124
Query: 121 VSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPE 180
+ L+ P D V A + +N PP KP+ S S
Sbjct: 125 IVLK----------PKDEGVVVAEQ---ANAPPVAIKPKQELKSAS-------------- 157
Query: 181 FSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTA 240
N R AP + + R+ P+ LNPY G W IK RVT+
Sbjct: 158 ----QIVNEQRGNAAP-------------AARLSMTRRVHPLITLNPYQGNWVIKVRVTS 200
Query: 241 KGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKP 300
KG LR Y N RG+G VF+ +L D DG +I+ T FN A +FY E GK+Y VS+GSL+
Sbjct: 201 KGNLRTYRNARGEGCVFNVELTDEDGTQIQATMFNEAAKKFYPIFELGKVYYVSKGSLRI 260
Query: 301 AQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPIND----VEGMENNSVVDL 356
A K F + ND E+ L+ ++V+ E + IP+ Q++F I+ V G E +VD+
Sbjct: 261 ANKQFKTVQNDYEMSLNENAIVEEA-EGETFIPQVQYNFVKIDHLGTYVGGRE---LVDI 316
Query: 357 IGVVSYISPTASLMRKNGTET-QKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSG 415
IGVV +SPT S+ RK ET KR + + D SG++V ++LW + G L M DS
Sbjct: 317 IGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVSISLWNDLATTTGQELLDMVDSS 376
Query: 416 VFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDS 475
P++A+K+ +VSDF G + TI + L I PD PEA +K W++ EGK+T I +
Sbjct: 377 --PVVAIKSLKVSDFQGVSLSTIGRSTLAINPDLPEAQNVKSWYDSEGKDTSLAPIGAE- 433
Query: 476 LSVGRADIRKT-------VSQIKDEGLGTKEKPDWITVSATIVYIKCD-NFCYTACPIMI 527
+ RA K+ +S I + +EKP + +++A I +IK D N Y AC
Sbjct: 434 MGAARAGGLKSMYSDRVFLSHITSDPAMGQEKPVFFSLNAIISHIKPDQNMWYRAC---- 489
Query: 528 GDRPCNKKVMNN-GDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM 586
+ CNKKV G G W C+ C ++ EC RYI+ +I D TG WV+ F E AE+I+
Sbjct: 490 --KTCNKKVTEAFGSGYW-CEGCQKNDSECSLRYIMVLKISDPTGEAWVSVFNEHAEKII 546
Query: 587 GMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYN 646
G SA +L ++ ++ D+ + ++ AT+ +LF++ V + + +E+R + TV +
Sbjct: 547 GCSADELDRIRK-EEGDDSYILKLKEATWVPHLFRVSVTQHEYMNEKRQRITVRSEAPVD 605
Query: 647 YSSETRFILDLMDKLKS 663
Y++E++++L+ + KL +
Sbjct: 606 YAAESKYLLEEIAKLTA 622
>gi|342877980|gb|EGU79393.1| hypothetical protein FOXB_10069 [Fusarium oxysporum Fo5176]
Length = 608
Score = 308 bits (789), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 203/658 (30%), Positives = 336/658 (51%), Gaps = 101/658 (15%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
+PVLQ + +K + Q RFR+V+SDG Q MLATQ N +V L G +
Sbjct: 28 VPVLQCLQVKQMAPSAQGGD-----RFRLVMSDGQHYVQTMLATQANHVVHDNKLVRGCI 82
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATG 120
R+ ++T N ++ + I++++D I+ + +G E+ G
Sbjct: 83 ARIKQYTPNNLKGKNILVILD----IEVIESLG---------VQEKIGE----------- 118
Query: 121 VSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPE 180
P D+ PAA+ GA +G F + E
Sbjct: 119 --------------PFAVDSKPAAQE--------------GAIAG------GDFYGVKKE 144
Query: 181 FSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTA 240
S+ + + Q P+M+A S I PI L+P+ KWTIKARVT+
Sbjct: 145 ESKTQPQQFQQQQQQSMPSRPAMHAG----------SNIYPIEGLSPFAHKWTIKARVTS 194
Query: 241 KGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVS---RGS 297
K +++ ++ G+GK+F +LLD + GEI+ T FN D FY +++ G +Y +S R +
Sbjct: 195 KSDIKTWHKATGEGKLFSVNLLD-ESGEIKATGFNDQCDAFYDRLQEGSVYYISTPCRVA 253
Query: 298 LKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLI 357
L A+K F++L ND E+ + ++++ ED ++P+ +F+F I +++ +E ++ VD+I
Sbjct: 254 L--AKKQFSNLPNDYELTFERDTVIEKA-EDQTNVPQVRFNFCSIQELQSVEKDNTVDVI 310
Query: 358 GVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGV 416
GV+ + + +K+G QKR L L D +G SV +T+WG N D+
Sbjct: 311 GVLKEVGEVGDITSKKDGRPFQKRELTLVDDTGFSVRVTIWGKSANS--------FDAPP 362
Query: 417 FPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSL 476
++A K +VSDF GK + +S+ + ++PD P+AHRLK W++ G+N + + ++
Sbjct: 363 ESVVAFKGTKVSDFGGKSLSLLSSGTMTVDPDIPDAHRLKGWYDSAGRN-DTFATHQNMA 421
Query: 477 SVGRADIRK----TVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPC 532
S+G A RK +SQ+KDE LG ++ + T+ ATIV++K +NFCY AC + C
Sbjct: 422 SMGNATGRKEDLKIISQVKDENLGMDDQA-YYTIKATIVFVKQENFCYPACL----SQGC 476
Query: 533 NKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKD 592
NKKV DG WHC++C S + +YRYIL + DHT W++ F + +I+G +A +
Sbjct: 477 NKKVTQMPDGTWHCEKCAISHEKPEYRYILSLNVADHTSHQWLSCFDDSGRQIVGRTADE 536
Query: 593 LYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSE 650
+ LK + +D KF A K+ F+ + K + F + QR++ V+ ++ SE
Sbjct: 537 MMELK--ENDDNKFMAAFEEANCKKFTFRCRAKMDNFGEAQRIRYQVMTVTPLDFKSE 592
>gi|410915298|ref|XP_003971124.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Takifugu rubripes]
Length = 570
Score = 307 bits (787), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 164/440 (37%), Positives = 259/440 (58%), Gaps = 21/440 (4%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
+IPIA LNPY KWTI+ARV K +R +NN RG+GK+F F+++D + GE+++T FN
Sbjct: 141 MIPIAQLNPYQSKWTIRARVMNKSSIRTWNNSRGEGKLFSFEIVD-ESGEMKITAFNKEV 199
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D+F+ VE GK+Y +S+ +LK A K +N L +D E+ L S + C D IP Q
Sbjct: 200 DKFFSLVEQGKVYYISKATLKVANKQYNTLKHDYEMTLHAHSSIMPC-ADGQDIPAVQCD 258
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
F PI ++E + ++++D+IGV + + K+ E KRTLHL D +G+ V TLWG
Sbjct: 259 FVPIAELENRDKDAIIDVIGVCKTAEDVSRITTKSSREVSKRTLHLIDTTGKMVAATLWG 318
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEW 458
++ + + P++A+K R+SDF G+ + + ++ + + PD PEA RL+ W
Sbjct: 319 ----EEAEKFE----GSEQPVVAIKGARLSDFGGRSLSALFSSTVMVNPDIPEAFRLRAW 370
Query: 459 FEKEGKNTQSVSISRDSLSVGRADIR---KTVSQIKDEGLGTKEKPDWITVSATIVYIKC 515
+++ G S S+S G + +R KT+S +K+E LG EK D+ + AT++Y +
Sbjct: 371 YDQGGYALASQSLSET--KSGGSGMRMNWKTLSDVKNENLGHGEKADYFSCVATLLYSRK 428
Query: 516 DNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWV 575
D Y ACP + CNKKV++ +G + C++C++ YR +L + D WV
Sbjct: 429 DTCLYRACPSV----DCNKKVLDQHNGWFRCEKCNREFPNFKYRLLLSANLADFGDNQWV 484
Query: 576 TAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRV 635
T FQE AE ++G SA+ L L+ D ++ F V + A FT ++FK +VK ET++DE RV
Sbjct: 485 TCFQETAEALLGHSAETLGQLR--DTDEAAFDAVFQKANFTTHIFKNRVKLETYNDESRV 542
Query: 636 KSTVVKAERYNYSSETRFIL 655
K TV++ + N+ +R +L
Sbjct: 543 KVTVMEVQPVNHREYSRMLL 562
>gi|320591361|gb|EFX03800.1| replication protein a DNA-binding subunit [Grosmannia clavigera
kw1407]
Length = 631
Score = 307 bits (786), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 208/672 (30%), Positives = 340/672 (50%), Gaps = 83/672 (12%)
Query: 1 MPVLQVMDLK-LVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGS 59
+PVLQ + +K L +R+R+VLSD Q MLATQ N +V G L GS
Sbjct: 30 VPVLQCLQIKPLGPPPNGAAGAAGSERYRVVLSDVDNFVQTMLATQGNHVVHDGKLVRGS 89
Query: 60 VVRLTKFTCNVIQNRMIVIVMDLDVI--IDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSN 117
+VR+ + N ++ + I+I++DLDVI + D IG+P P + P +
Sbjct: 90 IVRIKAYQANAVKGKNILIILDLDVIESLGAHDKIGEPT----------PVDSSIQPVAA 139
Query: 118 ATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNP 177
AT ++ N V + DT + +GA +G+ N +
Sbjct: 140 ATSTNIGGTNFYGVKKEEPDT--------------KQGIRGSIGA-AGNNGNSTG----- 179
Query: 178 RPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKAR 237
+P ++Y + A P++Y PI L+PY KWTIKAR
Sbjct: 180 -----KPSGTSYGGSNAA----HPNIY----------------PIEGLSPYSHKWTIKAR 214
Query: 238 VTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG- 296
VT+K E+R ++ G+GK+F +LLD + GEI+ T FN DQ+Y ++ G +Y +S
Sbjct: 215 VTSKSEIRTWHKSSGEGKLFSVNLLD-ESGEIKATGFNEQCDQYYDLLQEGSVYYISSPC 273
Query: 297 SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDL 356
+ A+K F++L ND E+ + + ++ ED +S+P+ ++ F + ++ +E ++V+D+
Sbjct: 274 RVNIAKKQFSNLPNDYELSFERDTQIEKA-EDQSSVPQVRYAFCTLQALQSVEKDAVIDV 332
Query: 357 IGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSG 415
IGV+ + +S+ K+ G +KR L L D S SV T+WG + D+
Sbjct: 333 IGVLRDVGEVSSITSKSSGKPYEKRELTLVDDSSFSVRTTIWG--------KTAVAFDAK 384
Query: 416 VFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVS----- 470
++A K RVSDF G+ + + + + I+PD EAH LK W++ G++ S
Sbjct: 385 PESVIAFKGVRVSDFGGRSLSLLQSGVMSIDPDITEAHHLKGWYDAAGRSENFSSHNSMG 444
Query: 471 ISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDR 530
GR + KT++Q++DE +G E + T+ ATIV+IK + F Y AC
Sbjct: 445 GMGGGAGSGRPEQVKTIAQVRDENIGMDETA-YFTLKATIVFIKQETFAYPAC----SSD 499
Query: 531 PCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM-GMS 589
C+KKV+++ DG W C++CD + + YRY + + DHTG W+T F + IM G S
Sbjct: 500 GCSKKVVSSSDGTWRCEKCDMNHPQALYRYTMMLNVNDHTGQLWLTCFDDVGRMIMGGRS 559
Query: 590 AKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSS 649
A +L L+ +++D FG A KY F+++ K +TF D QR++ +V A ++ S
Sbjct: 560 ADELTELR--EEDDIAFGAEFEKANCRKYSFRVRAKMDTFGDAQRIRYQIVNAHPLDFKS 617
Query: 650 ETRFILDLMDKL 661
E + +L+ +
Sbjct: 618 EGHKLAELIHQF 629
>gi|301115057|ref|XP_002999298.1| replication protein A 70 kDa DNA-binding subunit, putative
[Phytophthora infestans T30-4]
gi|262111392|gb|EEY69444.1| replication protein A 70 kDa DNA-binding subunit, putative
[Phytophthora infestans T30-4]
Length = 629
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 211/662 (31%), Positives = 327/662 (49%), Gaps = 70/662 (10%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P LQ++D K K + R+R+VLSDG+ GMLATQ ++ + L+ V+
Sbjct: 23 PWLQIIDTK----KIKPASGTGGDRYRIVLSDGTSYLSGMLATQLAPMMENESLKTNYVL 78
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGV 121
+L + N +Q R I+IV+ + I+ D IG P
Sbjct: 79 QLKDYLGNEVQGRRIIIVLKVGNIVPHFDCIGSP-------------------------- 112
Query: 122 SLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEF 181
Q+ + +R +P + A ++PP A S Q P +F
Sbjct: 113 --QNIDGSRGPSVPAASSA---------SVPPAAALGARSAAPAQPSYQQP--RAPTNQF 159
Query: 182 SRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYM-GKWTIKARVTA 240
+P A+ + TP P + S Y NRG V + + R+ I +LNPY G+WTIKARVT
Sbjct: 160 QQPPAAPSSYTP--PTKPAASTY-NRGPVVRQDPNIRLSDIQSLNPYAGGRWTIKARVTT 216
Query: 241 KGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKP 300
+ ++++ N RG GK+F DLLD+ GEIR T FN D+FY + G I+ + G +K
Sbjct: 217 RSPIKNWTNSRGSGKLFSVDLLDAKKGEIRATFFNDGVDKFYEMLRPGGIFYFAGGKVKM 276
Query: 301 AQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVV 360
+ F+ + ND E+ D S + E D I + Q+ F+ I ++E + +S VD+IG+V
Sbjct: 277 TNRRFSSVDNDYEVTFDPHSDISPAPE-DGQISQMQYAFKKIAEIENVPADSNVDIIGIV 335
Query: 361 SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPIL 420
++P K G + KR + L D S ++ T+W + Q C + + +L
Sbjct: 336 RDVTPVNEFTSKAGKQLFKRDISLVDDSNVEIKCTMWNE-------QAQQECSNWLNQVL 388
Query: 421 AVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGR 480
A+K RVS+FNG+ + T ++ + P PEA L WF G TQ+ S+S G
Sbjct: 389 AIKGCRVSEFNGRSLSTAGSSSFTVNPTIPEAGHLVTWFSNGGNATQTKSLSSGGGGFGG 448
Query: 481 ADI-----RKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDN-FCYTACPIMIGDRPCNK 534
+ R ++ IK + LG +KPD+ITV T+ +IK D Y ACP C K
Sbjct: 449 GSLGSFSERAVINDIKSKQLGFGQKPDYITVKGTVNFIKHDTGIYYQACP------KCQK 502
Query: 535 KVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM-GMSAKDL 593
KV+ + + C++C S C+ RYIL + DHTG TW T F + + +M G +A ++
Sbjct: 503 KVVADVAQNYTCEKCQTSYPNCENRYILSVIMLDHTGSTWTTCFNDQGKVVMGGRTADEI 562
Query: 594 YSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRF 653
L+ D N F + + A F +Y+ +L+VK E +E RVK++VV E N+ E++
Sbjct: 563 GELR--DTNPALFESIFKEALFKQYVCRLRVKAENVQEELRVKASVVNLEPVNFVQESKD 620
Query: 654 IL 655
+L
Sbjct: 621 LL 622
>gi|443926858|gb|ELU45414.1| damaged DNA binding protein [Rhizoctonia solani AG-1 IA]
Length = 1077
Score = 306 bits (784), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 157/447 (35%), Positives = 267/447 (59%), Gaps = 29/447 (6%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PI AL+PY KWTI+ARVT K ++R ++NQRG+GK+F +L+D + GEIR T FN V D
Sbjct: 643 PIEALSPYSNKWTIRARVTQKSDIRTWSNQRGEGKLFSVNLMD-ETGEIRATGFNEVVDN 701
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
Y ++E GK+Y S+ ++ A+K F++L ND EI L+ + C ED++++P+ QF+F
Sbjct: 702 LYSKLEEGKVYWFSKARVQLAKKQFSNLSNDYEIALERQTEAIPC-EDESAVPKVQFNFT 760
Query: 341 PINDVEGMENNSVVDLIGVVSYISPTASL-MRKNGTETQKRTLHLRDMSGRSVELTLWGN 399
++ ++G+E +++VD++GVV+ + P ++ ++ G KR + + D SG SV +T+WG
Sbjct: 761 ELSQLDGVEKDAMVDVLGVVTEVKPIETINVKSTGKTVSKRDVTVVDKSGSSVRMTIWG- 819
Query: 400 FCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWF 459
+ + P++A K +V DF G+ + +S++ + PDFPEAH L+ W+
Sbjct: 820 -------KQAETFQAENNPVIAFKGVKVGDFGGRTLSLVSSSTMTFHPDFPEAHALQGWY 872
Query: 460 EKEGKNTQSVSIS--------RDSLSVGRADIRKTVSQIKDEGLGTKE--KPDWITVSAT 509
EG + S S ++ R ++ KT+ +K+E LG E K D+ T AT
Sbjct: 873 SSEGHSQTFKSQSTGGMGAGGGGVGTINRREM-KTLQAVKEENLGMGEEGKTDFFTTRAT 931
Query: 510 IVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDH 569
I++IK DN Y AC G C+KKV DG W C++C+++ + +YRYI+ + D+
Sbjct: 932 IIHIKSDNIMYPAC----GSDNCSKKVTEVHDG-WRCEKCEKTFPKPNYRYIMSLSVADY 986
Query: 570 TGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETF 629
T W+ F + E I+GM+A +L+ LK ++N+ + + AT ++F+ + ++ T+
Sbjct: 987 TQTAWLQVFNDPGELILGMTASELHELK--EENEASYTTAIEKATSQTWMFQCRAQQSTY 1044
Query: 630 SDEQRVKSTVVKAERYNYSSETRFILD 656
D+ RV+ V +A + +Y+ E+R +L+
Sbjct: 1045 QDQSRVRYGVNRAHKIDYAQESRALLE 1071
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQ++ +K V S R+R+V SDG Q MLAT+ N+ TS ++
Sbjct: 513 PVLQLLSIKKVSSG------GSSDRYRLVYSDGEYHCQSMLATKLNDYFTSQDFTPKCII 566
Query: 62 RLTKFTCNV 70
RLT+ N+
Sbjct: 567 RLTRCAMNL 575
>gi|346471207|gb|AEO35448.1| hypothetical protein [Amblyomma maculatum]
Length = 604
Score = 306 bits (784), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 211/669 (31%), Positives = 340/669 (50%), Gaps = 97/669 (14%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQ-GMLATQRNELVTSGLLQIGSV 60
PVLQV++ K + S + R+R++LSDG + ML TQ N ++T+ + +V
Sbjct: 22 PVLQVLNFKPITS-------NTADRYRLLLSDGVQCHTYAMLGTQLNGMITNNEIDKFAV 74
Query: 61 VRLTKFTCNVIQ-NRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
V+L K+ CNV+ ++ ++IV+DL VI + G GNP
Sbjct: 75 VQLDKYMCNVVSPDKKVLIVLDLTVI----------------AKGSAVGCRLGNPV---- 114
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFS-NQSASFSNPR 178
+P T P+A GS +VGA F N S+
Sbjct: 115 --------------IPNSTGGAPSA---GS--------ADVGANKTQFQQNGGHDQSSSM 149
Query: 179 PEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARV 238
P + R A Y S + ++PIA+L PY +WTI+ARV
Sbjct: 150 PSYGR-----------AAYPASTNDVV-------------VVPIASLTPYQNRWTIRARV 185
Query: 239 TAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSL 298
T K +R ++N +G+GK+F DLLD + GEIR T FNA D+ Y VE K+Y +SR +
Sbjct: 186 TNKSGIRTWSNSKGEGKLFSMDLLD-ESGEIRATAFNAECDRLYDIVEVNKVYYISRAVI 244
Query: 299 K--PAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDL 356
K A +F+ + ND E+ + + C + +IP QF+F PI+ ++ + +SV+D+
Sbjct: 245 KNIRAGYSFSSIKNDFEMSFIPETTITPCDDVVPNIPTLQFNFVPISRLQEVSKDSVIDV 304
Query: 357 IGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSG 415
IG+ ++ R+N E +KR + L D SG V LT+WG+ D
Sbjct: 305 IGICKTAGDVTTVTRRNTNQELKKRDVSLVDRSGTEVSLTMWGD--------QAEKFDGS 356
Query: 416 VFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSIS-RD 474
P++AVK RVSDF+G + IS++ L + PD PE+H L W+ KEG Q+ S+S R
Sbjct: 357 DNPVVAVKGARVSDFSGVSLSLISSSMLQVNPDIPESHALLGWYTKEGALLQTRSLSTRA 416
Query: 475 SLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNK 534
++G KT++Q K E LG +KPD+ +V A + I+ +N Y ACP CNK
Sbjct: 417 GGAMGGNANWKTLAQAKAENLGQGDKPDYYSVKACVSIIRKENCLYKACP----SENCNK 472
Query: 535 KVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLY 594
KV++ +G + C++C + ++ +R ++ + D + WVT F + AE+++G SA+DL
Sbjct: 473 KVVDLENGYYRCEKCARETMDFKWRLLVSANLTDFSDGQWVTCFGKEAEQLIGASAEDLG 532
Query: 595 SL-KYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRF 653
+ + D ++ +++ F ++F+L+ K E F+DE R+K++V+ NY T+
Sbjct: 533 EMYSKSSKEDSRYEDILNEVPFKPFIFRLRTKMEVFNDESRLKTSVMSVAPVNYVEYTQK 592
Query: 654 ILDLMDKLK 662
+L + +L+
Sbjct: 593 LLKDIAELR 601
>gi|357120348|ref|XP_003561889.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Brachypodium distachyon]
Length = 635
Score = 306 bits (783), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 225/683 (32%), Positives = 336/683 (49%), Gaps = 100/683 (14%)
Query: 3 VLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVR 62
V+QV+DLK + S RF + SDG + ML T V SG LQ +VR
Sbjct: 30 VVQVVDLKPLGS--------TGTRFTFMASDGKAKMKAMLPTNFASEVNSGNLQNLGLVR 81
Query: 63 LTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPS---SNEQPGSVTGNPQSNAT 119
+ +TCN I + +II KC+ + + + A+ S S E+P V P+
Sbjct: 82 ILHYTCNDIPK-----TLSKCLIITKCEVVAQALDAEINSEVKSEEEP-VVLAKPKEEPV 135
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAA-----RHVGSNLPPNYFKPEVGAGSGSFSNQSASF 174
++ +P T P+A +HV S S
Sbjct: 136 VLT---KRTEEAEIMPSQTGGGPSATVQKRQHVKS--------------------ASQII 172
Query: 175 SNPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTI 234
S R N + + R+ P+ +LNPY G W I
Sbjct: 173 SEER--------------------------GNAAPAARLAITRRVHPLISLNPYQGNWVI 206
Query: 235 KARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVS 294
K RVT+KG LR Y N RG+G VF+ +L D DG +I+ T FN A +FY E GK+Y +S
Sbjct: 207 KVRVTSKGNLRTYRNARGEGHVFNVELTDEDGTQIQATMFNEAAKKFYPMFELGKVYYIS 266
Query: 295 RGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPIND----VEGMEN 350
+GSL+ A K F + ND E+ L+ ++V+ E ++ IP Q++F I+ V G E
Sbjct: 267 KGSLRVANKQFKTVQNDYEMTLNENAVVEEA-EGESFIPPVQYNFVKIDHLGPYVGGRE- 324
Query: 351 NSVVDLIGVVSYISPTASLMRKNGTET-QKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQ 409
+VD+IGVV +SPT S+ RK ET KR + + D S ++V +TLW + G +L
Sbjct: 325 --LVDIIGVVQSVSPTLSIRRKIDNETIPKRDIVVADDSNKTVTVTLWNDLATTIGEQLL 382
Query: 410 HMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSV 469
M DS P++AVK+ +VSDF G V T+ + L I P+ PEA +L+ W+E EGK T
Sbjct: 383 DMVDSA--PVIAVKSLKVSDFQGVSVSTVGKSTLVINPELPEADKLRTWYESEGKGTSMA 440
Query: 470 SI------SRDSLSVGRADIRKTVSQI-KDEGLGTKEKPDWITVSATIVYIKCD-NFCYT 521
S+ SR S R +S I D LG ++KP + +++A I +IK D Y
Sbjct: 441 SVGADMGASRTGGSRSMYSDRVFLSHITSDPNLG-QDKPVFFSLNAYISHIKPDQTMWYR 499
Query: 522 ACPIMIGDRPCNKKVMNN-GDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQE 580
AC + CNKKV G G W C+ C ++ EC RYI+ ++ D TG W++ F +
Sbjct: 500 AC------KTCNKKVTEAVGSGYW-CEGCQKNYEECMLRYIMAIKVSDPTGEAWLSLFND 552
Query: 581 CAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVV 640
AE I+G SA +L + ++ D+ F ++ AT+ +LF++ V + + E+R + TV
Sbjct: 553 QAERIVGCSADELDRSRK-EEGDDSFLLRLKEATWVPHLFRVSVSQNEYMGEKRQRITVR 611
Query: 641 KAERYNYSSETRFILDLMDKLKS 663
+Y++E RF+L+ + KL S
Sbjct: 612 SESPVDYAAEARFLLEEIAKLTS 634
>gi|403214488|emb|CCK68989.1| hypothetical protein KNAG_0B05560 [Kazachstania naganishii CBS
8797]
Length = 633
Score = 304 bits (779), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 191/638 (29%), Positives = 324/638 (50%), Gaps = 74/638 (11%)
Query: 29 MVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQN--RMIVIVMDLDVII 86
+++SDG + + + + S LQ G +VR+T ++N R +V+V D +++
Sbjct: 48 VLMSDGVYYMKMLFRNEAADKFQSQELQKGDIVRITAADAVSLKNKTRFVVLVDDFELV- 106
Query: 87 DKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGD---TDAVPA 143
G NP S + H N V +L GD DA PA
Sbjct: 107 -------------------DAGKELVNPNSTFLNTYMAAHINELVPELKGDDEANDAHPA 147
Query: 144 ARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSM 203
A + + + GA + S +N S + + RP P S
Sbjct: 148 AEN-STTTGISGTATNSGAAAASATN-SMTGQSDRP-LGNPATS---------------- 188
Query: 204 YANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLD 263
G S I I L+PY WTIKARV+ KGE++ ++NQRG+GK+F+ + LD
Sbjct: 189 ------FGNSSKSKPIFAIEQLSPYQNVWTIKARVSFKGEIKTWSNQRGEGKLFNVNFLD 242
Query: 264 SDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQ 323
+ GEIR T FN +A ++Y ++ GK+Y VS+ L+PA+ F++L + E+ LD S+V+
Sbjct: 243 T-SGEIRATAFNDMATKYYEILQEGKVYYVSKARLQPAKPQFSNLSHPYELSLDRESVVE 301
Query: 324 LCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLH 383
C +DD ++P+ F+F ++ V+ E NS VD++G++ ++ +L + G +R +
Sbjct: 302 EC-QDDINVPKTHFNFIKLDTVQNQEANSTVDVLGIIKTVNDAFTLTSRAGKTFDRRDIV 360
Query: 384 LRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQL 443
L D S S+ + LW + +M + V +A+K RVSDF GK + T+ L
Sbjct: 361 LVDDSNSSINVGLWNTLAKE-----FNMPEGSV---VAIKGVRVSDFGGKSLTMGFTSNL 412
Query: 444 FIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQ-------IKDEGLG 496
P+ PEA+ LK W++ EG + ++ +D++ + K ++Q I D LG
Sbjct: 413 IPNPEIPEAYALKGWYDSEGHSANFTALGQDNVPGASPNAGKFIAQRISIGKAIAD-NLG 471
Query: 497 TKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVEC 556
+ D+ ++ A I ++K DNF Y AC ++ CNKK + + DG W C++C+ +
Sbjct: 472 KSDAGDYFSIRAAISFLKVDNFAYPAC----SNKDCNKKAIQSTDGTWRCEKCNTDNEKP 527
Query: 557 DYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFT 616
++RYIL I D TG WV F E AE+++G+SA L LK +++ ++F + +N
Sbjct: 528 EWRYILTLSIMDETGQLWVVLFNEQAEQLLGVSATKLTDLK--EKDPKEFSRLTQNLQMN 585
Query: 617 KYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFI 654
+Y F+++ +E+ ++D+ R++ +V + NY +E F+
Sbjct: 586 QYDFRIRAREDNYNDQTRIRYSVSNIHQLNYKAEADFL 623
>gi|325187250|emb|CCA21790.1| replication protein A 70 kDa DNAbinding subunit puta [Albugo
laibachii Nc14]
Length = 612
Score = 303 bits (777), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 219/668 (32%), Positives = 333/668 (49%), Gaps = 81/668 (12%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P LQ++D+K K + R+R++LSDG+ GMLATQ L+ + L+ VV
Sbjct: 13 PWLQIIDIK----KIKPASGAGSDRYRIILSDGTSFISGMLATQLVPLMQNESLKENFVV 68
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGV 121
+L + N +Q R I+IV+ L G+ PA GNPQS
Sbjct: 69 QLKDYLGNDVQGRRILIVLSL----------GEIKPAYER---------IGNPQS----- 104
Query: 122 SLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSN-PRPE 180
++ N R S P VP + S P V QS S + R E
Sbjct: 105 -IESINAGRAST-PSLGVPVPKPLSIPS--------PSV---------QSLSINQLTRTE 145
Query: 181 FSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMG-KWTIKARVT 239
+ +S +A Q+ S+ ++G V + + R+ I +LNPY G +WTIKARVT
Sbjct: 146 MT---SSTHAVDGQS------SISNHKGSVVREDPNIRLSDIQSLNPYAGGRWTIKARVT 196
Query: 240 AKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLK 299
+ ++++ N RG GK+F DLLDS GGEIR T FN D+FY + G+++ S G ++
Sbjct: 197 NRAPIKNWTNARGQGKLFSIDLLDSKGGEIRATMFNDAVDKFYDVLRPGQVFYFSGGKIR 256
Query: 300 PAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGV 359
A + F+ ++ND EI D S + L DD I + ++F+ I +E + ++ +D+IGV
Sbjct: 257 MANRKFSSVNNDYEITFDQHSEISLA-SDDRGIQQMNYNFKKIGTLEKLPADANIDVIGV 315
Query: 360 VSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPI 419
V + P + ++ K G + KR L L D S V +TLW R Q C S +
Sbjct: 316 VKQVEPMSEIISKAGKQLFKRDLVLVDDSMAEVRVTLWNE-------RAQEDCSSWTNNV 368
Query: 420 LAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVG 479
LA+K R+S++NG+ +GT+S++ + P PEA L W+ G +++ S+S S G
Sbjct: 369 LAIKGCRISEYNGRSIGTLSSSSFNVNPTIPEAGFLLSWYNNGGSTSETTSLSVGSSGFG 428
Query: 480 RADI-----RKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDN-FCYTACPIMIGDRPCN 533
+ R + IK LG +KPD+ITV T+ YIK D+ Y AC CN
Sbjct: 429 GGSLGSFAERANLMDIKARQLGFDQKPDYITVKGTVNYIKHDSGLYYQACT------KCN 482
Query: 534 KKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGM-SAKD 592
KKV+ + + C++C C+ RYI+ I DHTG +WVT F + I+ +A +
Sbjct: 483 KKVIADVAQNYSCEKCQTVYKTCENRYIMSLVIADHTGSSWVTCFNDQGRVILNKRTADE 542
Query: 593 LYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETR 652
+ +K D N F V + A F Y+++L++K E E RVK VV E +Y E++
Sbjct: 543 IAEIK--DTNTALFEAVFKEALFKSYVWRLRIKAENVQGESRVKVNVVNLEPIDYVKESK 600
Query: 653 FILDLMDK 660
+L + K
Sbjct: 601 DLLHAISK 608
>gi|156545235|ref|XP_001604531.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Nasonia vitripennis]
Length = 595
Score = 303 bits (777), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 201/668 (30%), Positives = 330/668 (49%), Gaps = 107/668 (16%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDG-SRSQQGMLATQRNELVTSGLLQIGSV 60
PV QV + KLV S ++R+ ++DG + S +LA+Q N L+ + L S+
Sbjct: 22 PVFQVTNYKLVKSGIP--------KYRLQINDGCTESTYVILASQLNHLIENRNLSEFSI 73
Query: 61 VRLTKFTCNVIQ-----NRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQ 115
++L +++ ++I+ R I+ ++D +++ VP + N +
Sbjct: 74 MKLNQYSTSMIRGPDNSERKIITIVDCEIL----------VPGHQIGKNFK--------- 114
Query: 116 SNATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFS 175
NNT+V + AVP R +P N +
Sbjct: 115 ----------KNNTKVEE------AVPVTR-----IPTN-----------------QQVA 136
Query: 176 NPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIK 235
P P+ + + +P M +N P+ PIAAL+PY +W IK
Sbjct: 137 RPAPQLNNLVD-----------IMNPIMNSN--------APAFTTPIAALSPYHSRWVIK 177
Query: 236 ARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSR 295
ARVT K ++R ++N RG+GK F DL+D + EIR T F D+FY +E K+Y +S+
Sbjct: 178 ARVTNKSQIRTWSNSRGEGKFFSMDLID-ESSEIRCTAFRDQCDKFYDLIEIDKVYYISK 236
Query: 296 GSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVD 355
LKPA K FNHL ND E+ L S + +C E+ +IP QF+F PI+ +E M N ++D
Sbjct: 237 CQLKPANKQFNHLRNDYEMSLTYDSQIAICNEETETIPSLQFNFVPISTIETMPTNGIID 296
Query: 356 LIGVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDS 414
++G+V S + ++ G E K+ + + D + + +TLW + Q+ S
Sbjct: 297 ILGIVKTCSDLQTFTKRLTGQELTKKDVGVVDENNYLINVTLWAE-------KAQNFDGS 349
Query: 415 GVFPILAVKAGRVSDFN-GKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISR 473
G P++A+K ++ +FN GK + + T+ L + PD P AH+L+ WF G T+S S+SR
Sbjct: 350 G-NPVVAIKGAKIGEFNGGKTLSLLPTSILRVNPDIPTAHKLRSWFSTIGATTESHSLSR 408
Query: 474 DSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCN 533
S G T S++ + LG P T AT+ IK +N Y +CP C
Sbjct: 409 TSNDGGINGSLLTFSEVDENKLGHPHMPCVYTTKATVNLIKAENALYKSCP----SENCK 464
Query: 534 KKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDL 593
KKV++ +G + C++C + YR ++ + D TG W+ AF + AE ++ S +L
Sbjct: 465 KKVVDQSNGMYRCEKCAKDYPTFTYRLLVNAYLVDWTGNQWIAAFNDEAEILLNGSGPEL 524
Query: 594 YSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRF 653
LK +++ + + + + +F Y+FK++VK+ETF+DE R+KSTV+ + NY
Sbjct: 525 GELK--EKDFDAYLKKIAETSFKSYIFKIRVKQETFNDETRLKSTVLSVQPVNYKMYLDH 582
Query: 654 ILDLMDKL 661
+L + KL
Sbjct: 583 LLSKIQKL 590
>gi|345565697|gb|EGX48646.1| hypothetical protein AOL_s00080g275 [Arthrobotrys oligospora ATCC
24927]
Length = 606
Score = 303 bits (775), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 194/664 (29%), Positives = 333/664 (50%), Gaps = 95/664 (14%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++Q++ +K + + Q +R+R+V+SDG QGM+A+Q N L+ ++ GS+V
Sbjct: 28 PIMQILLVKKI-----EAQGKTPERYRIVVSDGIHFTQGMIASQSNHLMAENKIEKGSIV 82
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGV 121
R+ ++ ++ DK I V + ++ E+ G +A+ +
Sbjct: 83 RMKEYEAGKVK--------------DKSVLIVLAVELAQEATEEKIGDPKQVTPDSASEL 128
Query: 122 SLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEF 181
+ Q R +Q P T + + P GAG S QSA S
Sbjct: 129 AQQ-----RAAQQPTTTSNFYGNKPANAGRGAGGAGPSRGAGQSS-RGQSAGIS------ 176
Query: 182 SRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAK 241
I +L+PY +WTIKAR +
Sbjct: 177 ---------------------------------------LIESLSPYQNRWTIKARCIHR 197
Query: 242 GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPA 301
GE++++ N +GDGK+F D EI+ T F D YH E G +YL+S+ ++ A
Sbjct: 198 GEIKNWKNAKGDGKLFAVSFKDQ-SAEIKATGFGDQVDSLYHVFEEGSVYLISKCKVQIA 256
Query: 302 QKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVS 361
++ F+++ ND E+ D S VQ +DD +P+QQ++F + D++ E ++ +D+IG++
Sbjct: 257 KRQFSNIDNDYELVFDRDSEVQKV-DDDEGVPQQQYNFVTLQDLQNTEKDAQIDVIGILK 315
Query: 362 YISPTASLMR-KNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPIL 420
+ + S++ K KR LHL D +G +V+LT+WG + + M +S +L
Sbjct: 316 EVGESDSIVSAKTQKAFTKRDLHLVDDTGYTVKLTVWGKSAE----KFEIMPES----VL 367
Query: 421 AVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGR 480
AVK +VSDF G+ + +++ + ++PD EAHRLK WF EG++T S LS G
Sbjct: 368 AVKGVKVSDFGGRSLSMQNSSTMQVDPDLEEAHRLKGWFSSEGRDTNFNS--HKGLSTGG 425
Query: 481 AD-----IRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKK 535
AD + KTV Q DE +G E D+ T+ ATI YIK + Y AC C+KK
Sbjct: 426 ADGNRPSVFKTVQQASDENIGFGETADFYTLKATISYIKNEGHSYPACKT----EGCSKK 481
Query: 536 VMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYS 595
V+ +G W C++C + E +YRYIL DHTG TW+ F + + IMG +A DL++
Sbjct: 482 VVEF-NGSWRCEKCSVNWPEPEYRYILTCSAYDHTGQTWLNIFDDAGKVIMGTTASDLHA 540
Query: 596 LKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
++ D ++ + ++ A ++F+++ ++E + D RV++ V+ A++ +Y++E ++
Sbjct: 541 MQ--DYDESSYEATMKKAASQTWMFRIRAQQEVYQDVPRVRNRVLSAQKIDYAAEATRLI 598
Query: 656 DLMD 659
++++
Sbjct: 599 NMIN 602
>gi|380025907|ref|XP_003696705.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Apis florea]
Length = 601
Score = 303 bits (775), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 167/432 (38%), Positives = 248/432 (57%), Gaps = 23/432 (5%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PI AL+PY +W IKARV +K +R ++N RG+GK+F DL+D + GEIR T F D+
Sbjct: 168 PIVALSPYQNRWVIKARVVSKSNIRTWSNSRGEGKLFSMDLID-ESGEIRCTAFRNECDK 226
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
FY +E GK+Y +SR +LKPA K FN+L ND E+ L S + C++ IP QF F
Sbjct: 227 FYDMLEIGKVYYISRATLKPANKQFNNLKNDYEMTLIGDSEIIPCHDSGDDIPSLQFDFV 286
Query: 341 PINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWGN 399
IND+ E N ++D++G+V L +N G E +KR ++L D S V LTLWG+
Sbjct: 287 SINDINKKEQNDIMDILGIVKNSGDLQILTSRNSGRELKKRDVNLVDESNTMVTLTLWGS 346
Query: 400 FCNDDGLRLQHMCDSGVFPILAVKAGRVSDFN-GKVVGTISTTQLFIEPDFPEAHRLKEW 458
+ D P+LAVK R+++FN GK + T+S+T L I+PD P AHRL+ W
Sbjct: 347 QAEE--------FDGSSNPVLAVKGARITEFNGGKNLSTLSSTVLQIDPDLPAAHRLRGW 398
Query: 459 FEKEGKNTQSVSISRD-SLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDN 517
F G+N ++ S+S+ + G +++ T + KD LG K D TV AT+ I+ +N
Sbjct: 399 FNTMGRNEEATSLSKPFGSTTGVSELWITFQEAKDMELGYK-NSDIYTVKATLNMIRMEN 457
Query: 518 FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTA 577
Y ACP C KK+++ + + C++CD+ YR + + D T W+TA
Sbjct: 458 AIYKACP----SENCKKKLVDQANDMYRCEKCDKEYPNYRYRLLANISLADWTDNQWITA 513
Query: 578 FQECAEEIMGMSAKDLYSLKY--VDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRV 635
F + AE+I+ +A++L LK +D EKF E ATF ++FK++VK E F DE R+
Sbjct: 514 FNDEAEKILSSTAQELGELKENDIDAYSEKFSE----ATFKSFIFKIRVKVEVFGDENRL 569
Query: 636 KSTVVKAERYNY 647
++T + +Y
Sbjct: 570 RATCLGVSPMDY 581
>gi|328788416|ref|XP_003251128.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit isoform
2 [Apis mellifera]
Length = 590
Score = 303 bits (775), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 173/462 (37%), Positives = 259/462 (56%), Gaps = 25/462 (5%)
Query: 193 PQAPYMQSP--SMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQ 250
PQA QS ++ N + S PI AL+PY +W IKARV +K +R ++N
Sbjct: 127 PQAQIAQSAQTNLKPNHNMQQSSTNNISTTPIVALSPYQNRWVIKARVVSKSNIRTWSNS 186
Query: 251 RGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHN 310
RG+GK+F DL+D + GEIR T F D+FY +E GK+Y +SR +LKPA K FN+L N
Sbjct: 187 RGEGKLFSMDLID-ESGEIRCTAFRNECDKFYDMLEIGKVYYISRATLKPANKQFNNLKN 245
Query: 311 DLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLM 370
D E+ L S + C++ IP QF F IND+ E N +++++G+V Y L
Sbjct: 246 DYEMTLIGDSEIIPCHDSGDDIPSLQFDFVSINDINKKEQNDIMNILGIVKYSGDLQILT 305
Query: 371 RKN-GTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSD 429
+N G E +KR + L D S V+++LWG+ + D P+LAVK R+++
Sbjct: 306 SRNSGRELRKRDVSLVDESNTMVKVSLWGSQAEE--------FDGSSNPVLAVKGARITE 357
Query: 430 FN-GKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRD-SLSVGRADIRKTV 487
FN GK + T+S+T L I+PD P AHRL+ WF G+N ++ S+S+ + G +++ T
Sbjct: 358 FNGGKNLSTLSSTVLQIDPDLPAAHRLRGWFNTMGRNEEATSLSKPFGSTTGVSELWITF 417
Query: 488 SQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCD 547
+ KD LG K D TV AT+ I+ +N Y ACP C KK+++ + + C+
Sbjct: 418 QEAKDMELGYK-NSDIYTVKATLNMIRMENAIYKACP----SENCKKKLVDQANDMYRCE 472
Query: 548 RCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKY--VDQNDEK 605
+CD+ YR + + D T WVTAF + AE+I+ +A++L LK +D EK
Sbjct: 473 KCDKEYPNYRYRLLANISLADWTDNQWVTAFNDEAEKILSSTAQELGELKENDIDAYSEK 532
Query: 606 FGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNY 647
F E ATF ++FK++VK E F DE R+++T + +Y
Sbjct: 533 FSE----ATFKSFIFKIRVKVEVFGDENRLRATCLGVSPMDY 570
>gi|365767235|gb|EHN08720.1| Rfa1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 621
Score = 303 bits (775), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 186/645 (28%), Positives = 322/645 (49%), Gaps = 88/645 (13%)
Query: 29 MVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNR--MIVIVMDLDVII 86
+++SDG + +L Q S LQ G ++R+ +++ R +++V D +++
Sbjct: 48 IMISDGIYHMKALLRNQAASKFQSMELQRGDIIRVIIAEPAIVRERKKYVLLVDDFELVQ 107
Query: 87 DKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPAARH 146
+ D + + +E P + +G +Q VP H
Sbjct: 108 SRADMVNQTSTFLDNYFSEHPNETLKDEDITDSG--------NVANQTNASNAGVPDMLH 159
Query: 147 VGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYAN 206
SNL N K F+N+ NP + +RP
Sbjct: 160 SNSNLNANERK---------FANE-----NPNSQKTRP---------------------- 183
Query: 207 RGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDG 266
I I L+PY WTIKARV+ KGE++ ++NQRGDGK+F+ + LD+
Sbjct: 184 ------------IFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDT-S 230
Query: 267 GEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCY 326
GEIR T FN A +F ++ GK+Y VS+ L+PA+ F +L + E+ LD ++++ C+
Sbjct: 231 GEIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLXHPYELNLDRDTVIEECF 290
Query: 327 EDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRD 386
D++++P+ F+F ++ ++ E NS VD++G++ I+P L + G + +R + + D
Sbjct: 291 -DESNVPKTHFNFIKLDAIQNQEVNSNVDVLGIIQTINPHFELTSRAGKKFDRRDITIVD 349
Query: 387 MSGRSVELTLWGNFCNDDGLRLQHMCDSGV--FPILAVKAGRVSDFNGKVVGTISTTQLF 444
SG S+ + LW Q D + + A+K RV+DF GK + ++ L
Sbjct: 350 DSGFSISVGLWN----------QQALDFNLPEGSVAAIKGVRVTDFGGKSLSMGFSSTLI 399
Query: 445 IEPDFPEAHRLKEWFEKEGKNTQSVSISRD---------SLSVGRADIRKTVSQIKDEGL 495
P+ PEA+ LK W++ +G+N +++ ++ SL+ A R T+++ + E L
Sbjct: 400 PNPEIPEAYALKGWYDSKGRNANFITLKQEPGMGGQSAASLTKFIAQ-RITIARAQAENL 458
Query: 496 GTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVE 555
G EK D+ +V A I ++K DNF Y AC + CNKKV+ DG W C++CD +
Sbjct: 459 GRSEKGDFFSVKAAISFLKVDNFAYPAC----SNENCNKKVLEQPDGTWRCEKCDTNNAR 514
Query: 556 CDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATF 615
++RYIL I D T W+T F + A++++G+ A L SLK D N+ F ++ ++
Sbjct: 515 PNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLKEEDPNE--FTKITQSIQM 572
Query: 616 TKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDK 660
+Y F+++ +E+T++D+ R++ TV NY +E ++ D + K
Sbjct: 573 NEYDFRIRAREDTYNDQSRIRYTVANLHSLNYRAEADYLADELSK 617
>gi|6319321|ref|NP_009404.1| Rfa1p [Saccharomyces cerevisiae S288c]
gi|132473|sp|P22336.1|RFA1_YEAST RecName: Full=Replication factor A protein 1; Short=RF-A protein 1;
AltName: Full=DNA-binding protein BUF2; AltName:
Full=Replication protein A 69 kDa DNA-binding subunit;
AltName: Full=Single-stranded DNA-binding protein
gi|4312|emb|CAA42420.1| replication factor-A protein 1 [Saccharomyces cerevisiae]
gi|172466|gb|AAA34994.1| single stranded DNA binding protein [Saccharomyces cerevisiae]
gi|349752|gb|AAC04960.1| Rfa1p: Subunit of replication factor RF-A [Saccharomyces
cerevisiae]
gi|410541|gb|AAB27889.1| BUF2 [Saccharomyces cerevisiae]
gi|151941394|gb|EDN59765.1| RF-A [Saccharomyces cerevisiae YJM789]
gi|285810203|tpg|DAA06989.1| TPA: Rfa1p [Saccharomyces cerevisiae S288c]
gi|392301278|gb|EIW12366.1| Rfa1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 621
Score = 302 bits (774), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 186/645 (28%), Positives = 322/645 (49%), Gaps = 88/645 (13%)
Query: 29 MVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNR--MIVIVMDLDVII 86
+++SDG + +L Q S LQ G ++R+ +++ R +++V D +++
Sbjct: 48 IMISDGIYHMKALLRNQAASKFQSMELQRGDIIRVIIAEPAIVRERKKYVLLVDDFELVQ 107
Query: 87 DKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPAARH 146
+ D + + +E P + +G +Q VP H
Sbjct: 108 SRADMVNQTSTFLDNYFSEHPNETLKDEDITDSG--------NVANQTNASNAGVPDMLH 159
Query: 147 VGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYAN 206
SNL N K F+N+ NP + +RP
Sbjct: 160 SNSNLNANERK---------FANE-----NPNSQKTRP---------------------- 183
Query: 207 RGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDG 266
I I L+PY WTIKARV+ KGE++ ++NQRGDGK+F+ + LD+
Sbjct: 184 ------------IFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDT-S 230
Query: 267 GEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCY 326
GEIR T FN A +F ++ GK+Y VS+ L+PA+ F +L + E+ LD ++++ C+
Sbjct: 231 GEIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECF 290
Query: 327 EDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRD 386
D++++P+ F+F ++ ++ E NS VD++G++ I+P L + G + +R + + D
Sbjct: 291 -DESNVPKTHFNFIKLDAIQNQEVNSNVDVLGIIQTINPHFELTSRAGKKFDRRDITIVD 349
Query: 387 MSGRSVELTLWGNFCNDDGLRLQHMCDSGV--FPILAVKAGRVSDFNGKVVGTISTTQLF 444
SG S+ + LW Q D + + A+K RV+DF GK + ++ L
Sbjct: 350 DSGFSISVGLWN----------QQALDFNLPEGSVAAIKGVRVTDFGGKSLSMGFSSTLI 399
Query: 445 IEPDFPEAHRLKEWFEKEGKNTQSVSISRD---------SLSVGRADIRKTVSQIKDEGL 495
P+ PEA+ LK W++ +G+N +++ ++ SL+ A R T+++ + E L
Sbjct: 400 PNPEIPEAYALKGWYDSKGRNANFITLKQEPGMGGQSAASLTKFIAQ-RITIARAQAENL 458
Query: 496 GTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVE 555
G EK D+ +V A I ++K DNF Y AC + CNKKV+ DG W C++CD +
Sbjct: 459 GRSEKGDFFSVKAAISFLKVDNFAYPAC----SNENCNKKVLEQPDGTWRCEKCDTNNAR 514
Query: 556 CDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATF 615
++RYIL I D T W+T F + A++++G+ A L SLK D N+ F ++ ++
Sbjct: 515 PNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLKEEDPNE--FTKITQSIQM 572
Query: 616 TKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDK 660
+Y F+++ +E+T++D+ R++ TV NY +E ++ D + K
Sbjct: 573 NEYDFRIRAREDTYNDQSRIRYTVANLHSLNYRAEADYLADELSK 617
>gi|207347969|gb|EDZ73967.1| YAR007Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256270812|gb|EEU05961.1| Rfa1p [Saccharomyces cerevisiae JAY291]
gi|259144715|emb|CAY77656.1| Rfa1p [Saccharomyces cerevisiae EC1118]
gi|323310280|gb|EGA63470.1| Rfa1p [Saccharomyces cerevisiae FostersO]
gi|323334809|gb|EGA76181.1| Rfa1p [Saccharomyces cerevisiae AWRI796]
gi|323349907|gb|EGA84118.1| Rfa1p [Saccharomyces cerevisiae Lalvin QA23]
gi|323356339|gb|EGA88141.1| Rfa1p [Saccharomyces cerevisiae VL3]
gi|349576254|dbj|GAA21426.1| K7_Rfa1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 621
Score = 302 bits (774), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 186/645 (28%), Positives = 322/645 (49%), Gaps = 88/645 (13%)
Query: 29 MVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNR--MIVIVMDLDVII 86
+++SDG + +L Q S LQ G ++R+ +++ R +++V D +++
Sbjct: 48 IMISDGIYHMKALLRNQAASKFQSMELQRGDIIRVIIAEPAIVRERKKYVLLVDDFELVQ 107
Query: 87 DKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPAARH 146
+ D + + +E P + +G +Q VP H
Sbjct: 108 SRADMVNQTSTFLDNYFSEHPNETLKDEDITDSG--------NVANQTNASNAGVPDMLH 159
Query: 147 VGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYAN 206
SNL N K F+N+ NP + +RP
Sbjct: 160 SNSNLNANERK---------FANE-----NPNSQKTRP---------------------- 183
Query: 207 RGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDG 266
I I L+PY WTIKARV+ KGE++ ++NQRGDGK+F+ + LD+
Sbjct: 184 ------------IFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDT-S 230
Query: 267 GEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCY 326
GEIR T FN A +F ++ GK+Y VS+ L+PA+ F +L + E+ LD ++++ C+
Sbjct: 231 GEIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECF 290
Query: 327 EDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRD 386
D++++P+ F+F ++ ++ E NS VD++G++ I+P L + G + +R + + D
Sbjct: 291 -DESNVPKTHFNFIKLDAIQNQEVNSNVDVLGIIQTINPHFELTSRAGKKFDRRDITIVD 349
Query: 387 MSGRSVELTLWGNFCNDDGLRLQHMCDSGV--FPILAVKAGRVSDFNGKVVGTISTTQLF 444
SG S+ + LW Q D + + A+K RV+DF GK + ++ L
Sbjct: 350 DSGFSISVGLWN----------QQALDFNLPEGSVAAIKGVRVTDFGGKSLSMGFSSTLI 399
Query: 445 IEPDFPEAHRLKEWFEKEGKNTQSVSISRD---------SLSVGRADIRKTVSQIKDEGL 495
P+ PEA+ LK W++ +G+N +++ ++ SL+ A R T+++ + E L
Sbjct: 400 PNPEIPEAYALKGWYDSKGRNANFITLKQEPGMGGQSAASLTKFIAQ-RITIARAQAENL 458
Query: 496 GTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVE 555
G EK D+ +V A I ++K DNF Y AC + CNKKV+ DG W C++CD +
Sbjct: 459 GRSEKGDFFSVKAAISFLKVDNFAYPAC----SNENCNKKVLEQPDGTWRCEKCDTNNAR 514
Query: 556 CDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATF 615
++RYIL I D T W+T F + A++++G+ A L SLK D N+ F ++ ++
Sbjct: 515 PNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLKEEDPNE--FTKITQSIQM 572
Query: 616 TKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDK 660
+Y F+++ +E+T++D+ R++ TV NY +E ++ D + K
Sbjct: 573 NEYDFRIRAREDTYNDQSRIRYTVANLHSLNYRAEADYLADELSK 617
>gi|452004612|gb|EMD97068.1| hypothetical protein COCHEDRAFT_1189989 [Cochliobolus
heterostrophus C5]
Length = 611
Score = 302 bits (774), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 212/677 (31%), Positives = 341/677 (50%), Gaps = 101/677 (14%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQ + +K + K + + QRFR+VLSD Q M+AT NE+VTSG L+ GS+V
Sbjct: 25 PVLQCVQIKTMEPKAGEA--NPVQRFRVVLSDIRNFIQTMIATTANEIVTSGQLKKGSIV 82
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVI--IDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
RL K+ ++++ I+I+M+L+V+ + D IG QP ++ P
Sbjct: 83 RLLKYNPQRVKDKNILIIMELEVLSQYGELDKIG------------QPEALDTKP----- 125
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
DA PAA +P N F
Sbjct: 126 ------------------ADAQPAA------IPGNNF----------------------- 138
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVT 239
Y S A PQ P P+ +N G S P + PI +L+PY KWTI+AR T
Sbjct: 139 -----YGSKPAPAPQ-PQRSLPTHQSNPG---TSSHP-HLYPIESLSPYAHKWTIRARCT 188
Query: 240 AKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVS---RG 296
K +++ ++NQ+G GK+F +LLD D GEIR T F VAD+ + E G +Y +S R
Sbjct: 189 HKSDMKEWHNQKGTGKLFSVNLLD-DTGEIRATAFTEVADKLFPVFEEGVVYYISAPCRV 247
Query: 297 SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDL 356
+L A+KNF++L ND E+ + + V+ ED + P+ +F+F I D+ +E ++ +D
Sbjct: 248 TL--AKKNFSNLPNDYELQFERDTEVEKA-EDQDNKPQIRFNFTKIGDLTSVEKDTTIDT 304
Query: 357 IGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSG 415
IGV+ ++ ++ KN + KR L L D S SV LT+WG + L+
Sbjct: 305 IGVLKEVAEVTTITSKNTNKDFSKRELTLADDSQTSVRLTIWGKTAESFDVPLES----- 359
Query: 416 VFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKN-TQSVSISRD 474
I+A K +VSDF G+ + +S+ + ++PD EAH+L+ WF G+N T S S
Sbjct: 360 ---IVAFKGVKVSDFGGRSLSLLSSGSMMVDPDIDEAHKLRGWFNAVGQNATFSTHQSMV 416
Query: 475 SLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNK 534
S + G + K +S I +E ++ P ++++ A++VY++ F Y AC + CNK
Sbjct: 417 SNTGGSKNDAKPISAIIEEEAYLQDTPSYMSLRASVVYVRDSTFAYPAC----STQGCNK 472
Query: 535 KVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLY 594
KV+ G W C++C + E +YRY+L + DHTG W++ F E + I+G+SA +
Sbjct: 473 KVIEENPGSWWCEKCQAAFPEPNYRYVLSANVGDHTGTLWLSCFDEAGQAIIGVSANEAM 532
Query: 595 SLKYVDQND--EKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETR 652
+K D+ + F V++ AT + F+++ K ET+ D+ + + V+ N++ E
Sbjct: 533 KMKMDDEENGTTNFRNVMQEATCKTFNFRVRAKMETYQDQPKPRYQVMNIYPLNFAQEAN 592
Query: 653 FILDLMDKLKSGDSTSF 669
+ L+ + + + F
Sbjct: 593 KLAQLIKQYNMNEDSLF 609
>gi|190406650|gb|EDV09917.1| RF-A [Saccharomyces cerevisiae RM11-1a]
Length = 621
Score = 302 bits (774), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 186/645 (28%), Positives = 322/645 (49%), Gaps = 88/645 (13%)
Query: 29 MVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNR--MIVIVMDLDVII 86
+++SDG + +L Q S LQ G ++R+ +++ R +++V D +++
Sbjct: 48 IMISDGIYHMKALLRNQAASKFQSMELQRGDIIRVIIAEPAIVRERKKYVLLVDDFELVQ 107
Query: 87 DKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPAARH 146
+ D + + +E P + +G +Q VP H
Sbjct: 108 SRADMVNQTSTFLDNYFSEHPNETLKDEDITDSG--------NVANQTNASNAGVPDMLH 159
Query: 147 VGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYAN 206
SNL N K F+N+ NP + +RP
Sbjct: 160 SNSNLNANERK---------FANE-----NPNSQKTRP---------------------- 183
Query: 207 RGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDG 266
I I L+PY WTIKARV+ KGE++ ++NQRGDGK+F+ + LD+
Sbjct: 184 ------------IFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDT-S 230
Query: 267 GEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCY 326
GEIR T FN A +F ++ GK+Y VS+ L+PA+ F +L + E+ LD ++++ C+
Sbjct: 231 GEIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECF 290
Query: 327 EDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRD 386
D++++P+ F+F ++ ++ E NS VD++G++ I+P L + G + +R + + D
Sbjct: 291 -DESNVPKTHFNFIKLDAIQNQEVNSNVDVLGIIQTINPHFELTSRAGKKFDRRDITIVD 349
Query: 387 MSGRSVELTLWGNFCNDDGLRLQHMCDSGV--FPILAVKAGRVSDFNGKVVGTISTTQLF 444
SG S+ + LW Q D + + A+K RV+DF GK + ++ L
Sbjct: 350 DSGFSISVGLWN----------QQALDFNLPEGSVAAIKGVRVTDFGGKSLSMGFSSTLI 399
Query: 445 IEPDFPEAHRLKEWFEKEGKNTQSVSISRD---------SLSVGRADIRKTVSQIKDEGL 495
P+ PEA+ LK W++ +G+N +++ ++ SL+ A R T+++ + E L
Sbjct: 400 PNPEIPEAYALKGWYDSKGRNANFITLKQEPGMGGQSAASLTKFIAQ-RITITRAQAENL 458
Query: 496 GTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVE 555
G EK D+ +V A I ++K DNF Y AC + CNKKV+ DG W C++CD +
Sbjct: 459 GRSEKGDFFSVKAAISFLKVDNFAYPAC----SNENCNKKVLEQPDGTWRCEKCDTNNAR 514
Query: 556 CDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATF 615
++RYIL I D T W+T F + A++++G+ A L SLK D N+ F ++ ++
Sbjct: 515 PNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLKEEDPNE--FTKITQSIQM 572
Query: 616 TKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDK 660
+Y F+++ +E+T++D+ R++ TV NY +E ++ D + K
Sbjct: 573 NEYDFRIRAREDTYNDQSRIRYTVANLHSLNYRAEADYLADELSK 617
>gi|388581219|gb|EIM21529.1| replication factor-a protein [Wallemia sebi CBS 633.66]
Length = 599
Score = 302 bits (773), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 156/454 (34%), Positives = 265/454 (58%), Gaps = 26/454 (5%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
+ PI L+PY KWTIKARVT K +++ ++NQRG+GK+F +L+D + GEIR T FN
Sbjct: 162 VYPIEGLSPYQNKWTIKARVTQKSDIKFWSNQRGEGKLFSVNLMD-ETGEIRATGFNESV 220
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D+FY+ +E GK++ +++ ++ A+K F++L N+ EI D T+ ++ CY D + +P ++
Sbjct: 221 DEFYNMLEEGKVFFITKARVQIAKKQFSNLQNEYEIAFDKTTHIEPCY-DTSDVPDVKYS 279
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTET-QKRTLHLRDMSGRSVELTLW 397
F + ++E +E N++ D++GVV+ + ++ K+ + KR L++ D S +SV LTLW
Sbjct: 280 FTELQNLENLEPNAITDVLGVVTTAEEPSQIISKSTQKPYTKRELNIVDRSQQSVRLTLW 339
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKE 457
G +L D P++A K +VSDF G+ + + + LF+ PD PEAH L+
Sbjct: 340 G--------KLAENFDQVNEPVIAFKGVKVSDFGGRSLSMVGASTLFVNPDIPEAHSLRG 391
Query: 458 WFEKEGKNTQSVSISRDSLSVG------RADIRKTVSQIKDEGLGTKE--KPDWITVSAT 509
W++++GKN Q + + S +V + + KT+ Q+K LG + KPD+ T AT
Sbjct: 392 WYDQQGKNEQFSTFNNSSSTVKPEPGTVKPNEIKTLEQVKQSQLGLNDSGKPDYWTGKAT 451
Query: 510 IVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDH 569
+ YIK +N Y +CP + KK+ + + +W C++C+ S +YRYI+ DH
Sbjct: 452 VTYIKKENITYPSCPNDM------KKLTQDMNDKWRCEKCESSFDAPEYRYIITCNATDH 505
Query: 570 TGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETF 629
TG W++ F + E+ M A DL ++ + +D F V+NA + + F + K++TF
Sbjct: 506 TGQIWLSGFNDFGLELFKMPANDLQAM-VNNGDDASFEAAVKNALGSSFNFNCRAKQDTF 564
Query: 630 SDEQRVKSTVVKAERYNYSSETRFILDLMDKLKS 663
+D RV+ + +A NY SE + + + KL++
Sbjct: 565 NDNVRVRHQINRASTVNYKSEINRLCETISKLET 598
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PV+QV+ +K K R+RMVLSDG Q ML TQ N LL SV+
Sbjct: 26 PVVQVLQVK----KATASSDKAPDRYRMVLSDGKYYMQAMLGTQLNSYPEQELLIKNSVI 81
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVI-IDKCDPIGKP 95
+L + NV+QNR++VI + +D++ + IG P
Sbjct: 82 KLLNYAVNVVQNRLLVIALQIDIVETGPLEKIGSP 116
>gi|402222443|gb|EJU02510.1| hypothetical protein DACRYDRAFT_78925 [Dacryopinax sp. DJM-731 SS1]
Length = 602
Score = 302 bits (773), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 157/449 (34%), Positives = 255/449 (56%), Gaps = 26/449 (5%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI L+PY KWTIKARVT K ++RH++NQ+G+GK+F F L+D + EIR T FN
Sbjct: 167 IFPIEGLSPYQNKWTIKARVTNKSDIRHWSNQKGEGKLFSFTLMD-ETSEIRATAFNQQV 225
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D+FY ++ GK+Y S+G + PA++ FN++ N EI + + V+ C D +P ++
Sbjct: 226 DEFYDMIQEGKVYFFSKGRIGPAKRQFNNVSNLYEITFERNTEVEPCL-DAGDVPEVKYQ 284
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVELTLW 397
F + ++ + ++ D+IGVV+ + ++ K G KR + + D SG LTLW
Sbjct: 285 FVTLEGLQEVPKDATCDVIGVVTEVGELGEILAKATGRSVPKRDISIVDRSGFFCRLTLW 344
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKE 457
G G Q + PI+A K RVSDFNG+ + S++Q+ I PD P+AH+L+
Sbjct: 345 GK----SGETFQ----APDQPIIAFKGVRVSDFNGRSLSFQSSSQMSINPDIPDAHQLRG 396
Query: 458 WFEKEGKNTQSVSIS--------RDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSAT 509
W++ G N + S D R ++ KT++Q+KDEGLG EK D+ T A+
Sbjct: 397 WYDSIGNNQPHHTFSSAAGAGAGGDRGQFNRNEL-KTIAQVKDEGLGMGEKNDFFTTKAS 455
Query: 510 IVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDH 569
++++K +NF Y AC CNKKV+ DGRW C C + E +YRY+L + DH
Sbjct: 456 VIHVKQENFVYPAC----RSEKCNKKVVQTSDGRWECVSCGLTFDEPEYRYLLSISVADH 511
Query: 570 TGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETF 629
TG W++AF + + + M A +L +LK D ++ F +V+ + Y F + +++T+
Sbjct: 512 TGQAWLSAFNDAGDMLFEMKAGELQNLK--DTDETHFSKVMSDVRSKMYNFSCRARQDTY 569
Query: 630 SDEQRVKSTVVKAERYNYSSETRFILDLM 658
+D+ +V+ + + + + +E + ++D M
Sbjct: 570 NDQTKVRYNITRMTKIDLKTEMKALVDNM 598
Score = 43.9 bits (102), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 11/82 (13%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELV------TSGLL 55
PVLQ++ +K V + R R+++SDG Q MLATQ N L T L
Sbjct: 23 PVLQILSVKQVNTGPAGPP-----RMRVIISDGQHFTQAMLATQLNHLTDRPEEDTPAEL 77
Query: 56 QIGSVVRLTKFTCNVIQNRMIV 77
SV++L KF N +QN+ ++
Sbjct: 78 DKNSVIKLEKFASNSVQNKRLI 99
>gi|195649695|gb|ACG44315.1| replication protein A 70 kDa DNA-binding subunit [Zea mays]
Length = 618
Score = 301 bits (772), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 210/672 (31%), Positives = 332/672 (49%), Gaps = 100/672 (14%)
Query: 3 VLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVR 62
V+QV+DLK V + RF +DG + ML T V SG L+ ++R
Sbjct: 31 VVQVLDLKSVGTGS---------RFSFTATDGKDKIKAMLPTNFGSEVRSGNLKNLGLIR 81
Query: 63 LTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQR--PSSNEQPGSVTGNPQSNATG 120
+ +TCNV++ + D +++ KC+ + + + A+ + E+P V P+ G
Sbjct: 82 IIDYTCNVVKGKD-----DKVLVVIKCELVCQALDAEINGEAKKEEPPIVL-KPKDECVG 135
Query: 121 VSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPE 180
V+ PP KP+ S S
Sbjct: 136 VT-----------------------------PPLAMKPKQEVKSAS-------------- 152
Query: 181 FSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTA 240
N R AP V + R+ P+ LNPY G W IK RVT+
Sbjct: 153 ----QIVNEQRGNTAP-------------VKPLSMTKRVHPLITLNPYQGNWVIKVRVTS 195
Query: 241 KGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKP 300
KG LR Y N RG+G VF+ +L D DG +I+ T FN A +FY E G +Y VS+GSL+
Sbjct: 196 KGNLRTYRNARGEGCVFNVELTDEDGTQIQATMFNDAAKKFYPIFELGNVYYVSKGSLRI 255
Query: 301 AQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEG-MENNSVVDLIGV 359
A K F + ND E+ L+ ++V+ E + IP+ Q++ I+ + + +VD++GV
Sbjct: 256 ANKQFKTVQNDYEMSLNENAIVEEA-EGETCIPQVQYNLVKIDQLGSYVGGRELVDIVGV 314
Query: 360 VSYISPTASLMRKNGTET-QKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFP 418
V +SPT S+ RK ET KR + + D SG++V ++LW + G L M DS P
Sbjct: 315 VQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVSISLWNDLATTTGQELLDMADSS--P 372
Query: 419 ILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSV 478
++A+K+ +VSDF G + T+ + L I PD EA LK W++ EGK+T I + +
Sbjct: 373 VVAIKSLKVSDFQGVSLSTVGKSTLAINPDLHEAQNLKSWYDSEGKDTSLAPIGAE-MGA 431
Query: 479 GRA-------DIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCD-NFCYTACPIMIGDR 530
RA R +S I + +EKP + ++ ATI +IK D N Y AC +
Sbjct: 432 ARAGGFKSTYSDRVFLSHITSDPAMGQEKPVFFSLYATISHIKPDQNMWYRAC------K 485
Query: 531 PCNKKVMNN-GDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMS 589
CNKKV G G W C+ C ++ EC RYI+ ++ D TG WV+ F E AE+I+G S
Sbjct: 486 TCNKKVTETFGSGYW-CEGCQKNDSECSLRYIMVVKVSDPTGEAWVSVFNEHAEKIIGCS 544
Query: 590 AKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSS 649
A +L ++ ++ D+ + ++ AT+ +LF++ V + +++E+R + TV +++
Sbjct: 545 ADELDRIRK-EEGDDSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRITVRSEAPVEHAA 603
Query: 650 ETRFILDLMDKL 661
E++++L+ + KL
Sbjct: 604 ESKYLLEQIAKL 615
>gi|451853197|gb|EMD66491.1| hypothetical protein COCSADRAFT_138126 [Cochliobolus sativus
ND90Pr]
Length = 611
Score = 301 bits (771), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 211/677 (31%), Positives = 341/677 (50%), Gaps = 101/677 (14%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQ + +K + K + + QRFR+VLSD Q M+AT NE+VTSG L+ GS+V
Sbjct: 25 PVLQCVQIKTMEPKAGEA--NPVQRFRVVLSDIRNFIQTMIATTANEIVTSGQLKKGSIV 82
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVI--IDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
RL K+ ++++ I+I+M+L+V+ + D IG QP ++ P
Sbjct: 83 RLLKYNPQRVKDKNILIIMELEVLSQYGELDKIG------------QPEALDTKP----- 125
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
DA PAA +P N F
Sbjct: 126 ------------------ADAQPAA------IPGNNF----------------------- 138
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVT 239
Y S A PQ P P+ +N G S P + PI +L+PY KWTI+AR T
Sbjct: 139 -----YGSKPAPAPQ-PQRSLPTHQSNPG---TSSHP-HLYPIESLSPYAHKWTIRARCT 188
Query: 240 AKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVS---RG 296
K +++ ++NQ+G GK+F +LLD D GEIR T F VAD+ + E G +Y +S R
Sbjct: 189 HKSDMKEWHNQKGTGKLFSVNLLD-DTGEIRATAFTEVADKLFPVFEEGVVYYISAPCRV 247
Query: 297 SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDL 356
+L A+KNF++L ND E+ + + V+ ED + P+ +F+F I D+ +E ++ +D
Sbjct: 248 TL--AKKNFSNLPNDYELQFERDTEVEKA-EDQDNKPQIRFNFTKIGDLTSVEKDTTIDT 304
Query: 357 IGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSG 415
IGV+ ++ ++ KN + KR L L D S SV LT+WG + L+
Sbjct: 305 IGVLKEVAEVTTITSKNTNKDFSKRELTLADDSQTSVRLTIWGKTAESFDVPLES----- 359
Query: 416 VFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKN-TQSVSISRD 474
I+A K +VSDF G+ + +S+ + ++PD EAH+L+ WF G++ T S +
Sbjct: 360 ---IVAFKGVKVSDFGGRSLSLLSSGSMMVDPDIDEAHKLRGWFNAVGQSATFSTHQNMV 416
Query: 475 SLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNK 534
S + G + K +S I +E ++ P ++++ A+++Y+K F Y AC + CNK
Sbjct: 417 STTGGSKNDAKPISAIIEEEAYLQDTPSYMSLRASVLYVKDSTFAYPAC----STQGCNK 472
Query: 535 KVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLY 594
KV+ G W C++C + E +YRY+L + DHTG W++ F E + I+GMSA +
Sbjct: 473 KVIEENPGSWWCEKCQATFPEPNYRYVLSANVGDHTGTLWLSCFDEAGQTIVGMSANEAM 532
Query: 595 SLKYVDQND--EKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETR 652
+K D+ + F V++ AT + F+++ K ET+ D+ + + V+ N++ E
Sbjct: 533 KMKMDDEENGTRNFVNVMQEATCKTFNFRVRAKMETYQDQPKPRYQVMNIYPLNFAQEAN 592
Query: 653 FILDLMDKLKSGDSTSF 669
+ L+ + + + F
Sbjct: 593 KLAQLIKQYHMNEDSLF 609
>gi|307170289|gb|EFN62644.1| Replication protein A 70 kDa DNA-binding subunit [Camponotus
floridanus]
Length = 608
Score = 301 bits (770), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 205/672 (30%), Positives = 329/672 (48%), Gaps = 109/672 (16%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQ-GMLATQRNELVTSGLLQIGSV 60
PV Q++ K + +K R+R+++SDG MLATQ N L+ + +L ++
Sbjct: 25 PVFQMLGYKKLPNKDGTIGN---DRYRLLVSDGKNMNSFTMLATQLNHLIENNILTEYAI 81
Query: 61 VRLTKFTCNVI----QNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQS 116
+++ + + + + + ++++M ++V PGS G
Sbjct: 82 CKVSNYHLSSVNSGGKEKRVILIMGIEVT--------------------TPGSKVGCKLG 121
Query: 117 NATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSF-SNQSASFS 175
N T + + + D+ A + G +G + +N +A S
Sbjct: 122 NPTNI-----------ESKSEADSTTADKSTGQT-------------TGRYQTNGTAQRS 157
Query: 176 NPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIK 235
N ++NY G S++ + PIAAL+PY KW IK
Sbjct: 158 N---------SNNY---------------------GSSDIST--TPIAALSPYQNKWVIK 185
Query: 236 ARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSR 295
RVT K +R ++N RG+GKVF DL+D + GEIR T F + D+FY +E G +Y +SR
Sbjct: 186 VRVTNKSPIRTWSNSRGEGKVFSMDLID-ESGEIRCTAFRDMCDKFYDMLEIGNVYYISR 244
Query: 296 GSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVD 355
LK A K FN L ND E+ + + + C+E+ IP QF+F I+ VE E N ++D
Sbjct: 245 CQLKAANKQFNSLKNDYEMTMTNDTEIVPCHENIEDIPTLQFNFCSISQVENKERNDIID 304
Query: 356 LIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDS 414
++GVV+ + ++++N G E KR +++ D S V +TLWG D D
Sbjct: 305 VLGVVTTFNDVQHIVKRNTGQEFVKRDINIVDDSNAMVSVTLWGKQAED--------FDG 356
Query: 415 GVFPILAVKAGRVSDFN-GKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISR 473
PI+A+K R+ +FN GK + ++++ L +PD PEAHRL+ W+ G + + S+SR
Sbjct: 357 SNNPIIAIKGARIGEFNGGKNLSLLNSSTLEKDPDLPEAHRLRGWYTTVGPSENAKSLSR 416
Query: 474 DSLSVGRADIR---KTVSQIKDEGLGTK-EKPDWITVSATIVYIKCDNFCYTACPIMIGD 529
G D T + + LG K PD TV ATI I+ +N Y ACP+
Sbjct: 417 VG---GGGDFNAPLHTFEEATEARLGEKLNIPDSYTVMATICLIRVENSIYKACPV---- 469
Query: 530 RPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMS 589
C KK+++ G + C++C++ YR + I D TG W+TAF E AE+I+GMS
Sbjct: 470 ESCKKKLIDQSTGIFRCEKCNRDYPNFVYRLLASMNIADATGSRWITAFSEDAEKILGMS 529
Query: 590 AKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSS 649
A++L LK + ++E + + +A F +++F L+ K E F DE RV+ T NY +
Sbjct: 530 AQELGELK--ENDNEAYMQKFGDANFKRFMFSLRAKSEVFQDEMRVRHTCSSVAPLNYKT 587
Query: 650 ETRFILDLMDKL 661
++D + KL
Sbjct: 588 HLTHLIDKVSKL 599
>gi|428698228|pdb|4GOP|C Chain C, Structure And Conformational Change Of A Replication
Protein A Heterotrimer Bound To Ssdna
gi|428698231|pdb|4GOP|Z Chain Z, Structure And Conformational Change Of A Replication
Protein A Heterotrimer Bound To Ssdna
gi|451928925|pdb|4GNX|C Chain C, Structure Of
gi|451928928|pdb|4GNX|Z Chain Z, Structure Of
Length = 444
Score = 301 bits (770), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 160/459 (34%), Positives = 260/459 (56%), Gaps = 33/459 (7%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI L+PY +WTIKARVT+K ++RH++NQRG+GK+F +LLD D GEI+ T FN
Sbjct: 3 IYPIEGLSPYQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLD-DSGEIKATGFNDAV 61
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D+FY ++ +YL+S+ + A+K F++L N+ EI + ++ ++ C D +P ++
Sbjct: 62 DRFYPLLQENHVYLISKARVNIAKKQFSNLQNEYEITFENSTEIEEC-TDATDVPEVKYE 120
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVELTLW 397
F IN++E +E N D+IG++ + ++ K QKR L L D RSV+LTLW
Sbjct: 121 FVRINELESVEANQQCDVIGILDSYGELSEIVSKASQRPVQKRELTLVDQGNRSVKLTLW 180
Query: 398 G----NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAH 453
G F + G+ + P+LA K +V DF G+ + S++ + I PD E+H
Sbjct: 181 GKTAETFPTNAGVDEK--------PVLAFKGVKVGDFGGRSLSMFSSSTMLINPDITESH 232
Query: 454 RLKEWFEKEGKNTQ---------SVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWI 504
L+ W++ +G + Q + R+T+ Q+KDE LG EKPD+
Sbjct: 233 VLRGWYDNDGAHAQFQPYTNGGVGGGAMGGGGAGANMAERRTIVQVKDENLGMSEKPDYF 292
Query: 505 TVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQF 564
V AT+VYIK +N YTAC CNKKV + + W C++CD+S +YRYIL
Sbjct: 293 NVRATVVYIKQENLYYTAC----ASEGCNKKVNLDHENNWRCEKCDRSYATPEYRYILST 348
Query: 565 QIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKV 624
+ D TG W++ F E A +++GMSA +L+ L+ ++++ +F + A Y+F +
Sbjct: 349 NVADATGQMWLSGFNEDATQLIGMSAGELHKLR--EESESEFSAALHRAANRMYMFNCRA 406
Query: 625 KEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKS 663
K +TF+D RV+ T+ +A +++ ++L+D +++
Sbjct: 407 KMDTFNDTARVRYTISRAAPVDFAKAG---MELVDAIRA 442
>gi|297806837|ref|XP_002871302.1| hypothetical protein ARALYDRAFT_325405 [Arabidopsis lyrata subsp.
lyrata]
gi|297317139|gb|EFH47561.1| hypothetical protein ARALYDRAFT_325405 [Arabidopsis lyrata subsp.
lyrata]
Length = 604
Score = 301 bits (770), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 168/455 (36%), Positives = 261/455 (57%), Gaps = 17/455 (3%)
Query: 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAV 277
R+ P+ +LNPY G WTI+ RVT KG +R YNN RG+G VF+ +L D +G +I+ T FNA
Sbjct: 156 RVHPLVSLNPYQGSWTIRVRVTNKGVMRTYNNARGEGCVFNVELTDEEGTQIQATMFNAA 215
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
A +FY + E GK+Y +SRGSLK A K F + ND E+ L+ S V+ ++ P +F
Sbjct: 216 ARKFYDRFEMGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASNEEMFTPEIKF 275
Query: 338 HFRPINDVEGMEN-NSVVDLIGVVSYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVELT 395
+F PI+++ N ++D+IGVV +SPT S+ RKN E KR + L D S +V ++
Sbjct: 276 NFVPIDELGTYVNQKDLIDVIGVVQCVSPTMSIRRKNDNEMIPKRDITLADESKNTVVVS 335
Query: 396 LWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRL 455
LW + G L M D+ P++A+K+ +V DF G + TIS + + I PD PEA +L
Sbjct: 336 LWNDLATGIGQELLDMADN--HPVIAIKSLKVGDFQGVSLSTISRSNVVINPDSPEAKKL 393
Query: 456 KEWFEKEGKNTQSVSI------SRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSAT 509
K W++ EGK T +I S ++ S R +S I +EKP + ++ A
Sbjct: 394 KSWYDAEGKETSMSAIGSGMSSSANNGSRSMYSDRVFLSHITSNPSLGEEKPVFFSIRAY 453
Query: 510 IVYIKCD-NFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQD 568
I +IK D Y AC + CNKKV D + C+ C + EC RYI+ ++ D
Sbjct: 454 ISFIKPDQTMWYRAC------KTCNKKVTEAMDSGYWCEGCQKKDQECSLRYIMAVKVSD 507
Query: 569 HTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEET 628
TG TW +AF + AE+I+G +A +L +LK + +F ++ T++ +LF++ V ++
Sbjct: 508 STGETWFSAFNDEAEKIIGCTADELNNLKSEEGEVNEFQTKLKETTWSSHLFRISVSQQE 567
Query: 629 FSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKS 663
++ E+R + TV ++++ETR +L + K K+
Sbjct: 568 YNSEKRQRITVRGVSPIDFAAETRLLLQDISKKKT 602
>gi|223942895|gb|ACN25531.1| unknown [Zea mays]
gi|414865518|tpg|DAA44075.1| TPA: replication protein A DNA-binding subunit [Zea mays]
Length = 617
Score = 301 bits (770), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 210/672 (31%), Positives = 333/672 (49%), Gaps = 100/672 (14%)
Query: 3 VLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVR 62
V+QV+DLK V + RF +DG + ML T V SG L+ ++R
Sbjct: 31 VVQVLDLKSVGTGS---------RFSFTATDGKDKIKAMLPTNFGSEVRSGNLKNLGLIR 81
Query: 63 LTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQR--PSSNEQPGSVTGNPQSNATG 120
+ +TCNV++ + D +++ KC+ + + + A+ + E+P V P+ G
Sbjct: 82 IIDYTCNVVKGKD-----DKVLVVIKCELVCQALDAEINGEAKKEEPPIVL-KPKDECVG 135
Query: 121 VSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPE 180
V+ PP KP+ S S
Sbjct: 136 VT-----------------------------PPLAMKPKQEVKSAS-------------- 152
Query: 181 FSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTA 240
N R AP V + R+ P+ LNPY G W IK RVT+
Sbjct: 153 ----QIVNEQRGNTAP-------------VKPLSMTKRVHPLITLNPYQGNWVIKVRVTS 195
Query: 241 KGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKP 300
KG LR Y N RG+G VF+ +L D DG +I+ T FN A +FY E GK+Y VS+GSL+
Sbjct: 196 KGNLRTYRNARGEGCVFNVELTDEDGTQIQATMFNDAAKKFYPIFELGKVYYVSKGSLRI 255
Query: 301 AQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEG-MENNSVVDLIGV 359
A K F + ND E+ L+ ++V+ E + IP+ Q++ I+ + + +VD++GV
Sbjct: 256 ANKQFKTVQNDYEMSLNENAIVEEA-EGETCIPQVQYNLVKIDQLGSYVGGRELVDIVGV 314
Query: 360 VSYISPTASLMRKNGTET-QKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFP 418
V +SPT S+ RK ET KR + + D SG++V ++LW + G L +M DS P
Sbjct: 315 VQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVSISLWNDLATTTGQELLNMADSS--P 372
Query: 419 ILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSV 478
++A+K+ +VSDF G + T+ + L I PD EA LK W++ EGK+T I + +
Sbjct: 373 VVAIKSLKVSDFQGVSLSTVGKSTLAINPDLHEAQNLKSWYDSEGKDTSLAPIGAE-MGA 431
Query: 479 GRA-------DIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCD-NFCYTACPIMIGDR 530
RA R +S I + +EKP + ++ ATI +IK D N Y AC +
Sbjct: 432 ARAGGFKSTYSDRVFLSHITSDPAMGQEKPVFFSLYATISHIKPDQNMWYRAC------K 485
Query: 531 PCNKKVMNN-GDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMS 589
CNKKV G G W C+ C ++ EC RYI+ ++ D TG W + F E AE+I+G S
Sbjct: 486 TCNKKVTETFGSGYW-CEGCQKNDSECSLRYIMVIKVSDPTGEAWFSVFNEHAEKIIGCS 544
Query: 590 AKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSS 649
A +L ++ ++ D+ + ++ AT+ +LF++ V + +++E+R + TV +++
Sbjct: 545 ADELDRIRK-EEGDDSYVLKLKEATWVPHLFRVSVTQHEYNNEKRQRITVRSEAPVEHAA 603
Query: 650 ETRFILDLMDKL 661
E++++L+ + KL
Sbjct: 604 ESKYLLEQIAKL 615
>gi|430814436|emb|CCJ28324.1| unnamed protein product [Pneumocystis jirovecii]
Length = 513
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 152/478 (31%), Positives = 278/478 (58%), Gaps = 25/478 (5%)
Query: 186 ASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELR 245
A+ Y P P +Q+ N + S + I PI +L+PY +WTIKARVT+K E++
Sbjct: 55 ATFYGNKPHMPILQNQKEEINNRISSVS--SATIYPIESLSPYQNRWTIKARVTSKTEIK 112
Query: 246 HYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNF 305
H++NQ+G+GK+F +D + GEIR T FN D Y ++ G++Y +S+ + A+K F
Sbjct: 113 HWHNQKGEGKLFSCVFMD-ESGEIRATAFNDQVDMLYDVLQEGQVYFISKCRVNIAKKQF 171
Query: 306 NHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISP 365
+++ N+ E+ + + V+ C D +++P+ +F+F + D++ +E +S++D+IG++ +
Sbjct: 172 SNVQNEYELTFERDTEVEKC-PDQSTVPQAKFNFVFLKDLDNVEKDSIIDVIGILKEVHE 230
Query: 366 TASLMRKNGTE--TQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGV--FPILA 421
+ + + + KR + + D S SV LTLWG +H D + ++A
Sbjct: 231 SVEITSRTTQKFVYSKRDIFIVDSSNYSVRLTLWG----------KHALDFNIPQETVVA 280
Query: 422 VKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRA 481
K +VS+FNG+ + +++ + P EA+ LK+W++K+GK +S + + ++ R
Sbjct: 281 FKGLKVSEFNGRSLSLLNSGMVIANPQIEEAYSLKKWYDKQGKE-ESFATHQSIVTAIRK 339
Query: 482 DIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGD 541
+ RKT++QIKDE LG E+PD+ ++ ATIV+ K +N Y ACP CNKKV+ + +
Sbjct: 340 EERKTIAQIKDEQLGMAEQPDYFSIKATIVFFKQENAFYPACPTA----GCNKKVIEDNE 395
Query: 542 GRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQ 601
G W C++CD+S YRYIL + DHTG W++ F + I+G SA D+ ++ ++
Sbjct: 396 GGWRCEKCDKSFPAPQYRYILTISVNDHTGQIWLSCFDDVGRLIIGKSADDIVQMR--EE 453
Query: 602 NDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMD 659
N++ + A Y+F+++ K+++++ RV+ V+ A N++ E + + ++++
Sbjct: 454 NEQAALNIFHEANCKSYVFRVRAKQDSYNGAVRVRYQVMSASFINWAHECKLLTEIIN 511
>gi|226531756|ref|NP_001141474.1| uncharacterized protein LOC100273584 [Zea mays]
gi|194704722|gb|ACF86445.1| unknown [Zea mays]
gi|195647462|gb|ACG43199.1| replication protein A 70 kDa DNA-binding subunit [Zea mays]
gi|413956552|gb|AFW89201.1| Replication protein A DNA-binding subunit [Zea mays]
Length = 623
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 215/677 (31%), Positives = 337/677 (49%), Gaps = 101/677 (14%)
Query: 3 VLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVR 62
V+QV+DLK + RF +DG+ + ML T V SG L+ ++R
Sbjct: 31 VVQVLDLKSI---------GMGSRFSFTATDGNDKIKAMLPTYFASEVHSGNLKNFGLIR 81
Query: 63 LTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVS 122
+ +TCN ++ D +I+ KC+ + + + A+ + G + +
Sbjct: 82 ILDYTCNSVKGNA-----DKVLIVVKCETVCEALDAE----------INGEAKKEDPPIV 126
Query: 123 LQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKP--EVGAGSGSFSNQSASFSNPRPE 180
L+ P D +V A +N PP KP EV + S + Q
Sbjct: 127 LK----------PKDEGSVVAEE---TNSPPLVMKPKQEVKSASQIVTEQ---------- 163
Query: 181 FSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTA 240
R AP + + R+ P+ LNPY G W IK RVT+
Sbjct: 164 ----------RGNAAP-------------ATRLSMTRRVHPLITLNPYQGNWVIKVRVTS 200
Query: 241 KGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKP 300
KG LR Y N RG+G VF+ +L D DG +I+ T FN A +FY E GK+Y VS+GSL+
Sbjct: 201 KGNLRTYRNARGEGCVFNVELTDEDGTQIQATMFNEAAKKFYPIFELGKVYYVSKGSLRI 260
Query: 301 AQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPIND----VEGMENNSVVDL 356
A K F + ND E+ L+ ++V+ E + +P Q++ I+ V G E +VD+
Sbjct: 261 ANKQFKTVKNDYELSLNENAIVEEA-EGETFLPPVQYNLVKIDQLGPYVGGRE---LVDI 316
Query: 357 IGVVSYISPTASLMRKNGTET-QKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSG 415
+GVV +SPT S+ RK ET KR + + D SG++V ++LW + G L M DS
Sbjct: 317 VGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTGQELLDMVDSS 376
Query: 416 VFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDS 475
P++A+K+ +VSDF G + TI + L I PD PEA LK W++ EGK+T IS +
Sbjct: 377 --PVVAIKSLKVSDFQGVSLSTIGRSTLEINPDLPEAKNLKSWYDSEGKDTSLAPISAE- 433
Query: 476 LSVGRA-------DIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCD-NFCYTACPIMI 527
+ RA R +S I + +EKP + ++ A I +IK D N Y AC
Sbjct: 434 VGATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFSLYAIISHIKPDQNMWYRACTT-- 491
Query: 528 GDRPCNKKVMNN-GDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM 586
CNKKV G G W C+ C ++ EC RYI+ ++ D TG WV+ F E AE+I+
Sbjct: 492 ----CNKKVTEAFGSGYW-CEGCQKNYSECSLRYIMVIKLSDPTGEAWVSVFNEHAEKII 546
Query: 587 GMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYN 646
G SA +L ++ ++ D+ + ++ AT+ +LF++ V + + +E+R + TV +
Sbjct: 547 GCSADELDRIRK-EEGDDSYVLKLKEATWVPHLFRVSVTQHEYMNEKRQRITVRGEAPVD 605
Query: 647 YSSETRFILDLMDKLKS 663
+++E++++L+ + KL +
Sbjct: 606 FAAESKYLLEEIAKLTA 622
>gi|332018503|gb|EGI59093.1| Replication protein A 70 kDa DNA-binding subunit [Acromyrmex
echinatior]
Length = 608
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 208/673 (30%), Positives = 323/673 (47%), Gaps = 107/673 (15%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQ-GMLATQRNELVTSGLLQIGSV 60
PVLQV+ K + + + RFR+++SDG + MLATQ N L+T +L ++
Sbjct: 21 PVLQVLGYK-KLPRNVNKDGSATDRFRLLISDGQKLNSFTMLATQLNNLITENILNDFAI 79
Query: 61 VRLTKFTCNVIQN----RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQS 116
++T + + + N + +++++ ++V++ PG GN
Sbjct: 80 CKITNYHMSSVNNSGKEKRVMLILGIEVLV--------------------PGDQVGNKIG 119
Query: 117 NATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSN 176
N T + ++ +PE + S S A+ S+
Sbjct: 120 NPTNIEMKS-------------------------------EPESTSTSTSTCTSKATTSH 148
Query: 177 PRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKA 236
Y + AR + Y S +Y PIAAL+PY KW IK
Sbjct: 149 --------YQNGSARNATSNYQPSSDIYTT--------------PIAALSPYQNKWVIKV 186
Query: 237 RVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG 296
RVT K ++ ++N RG+GK+F DL+D + GEIR T F ++FY +E G +Y +SR
Sbjct: 187 RVTNKSPIKTWSNSRGEGKLFSMDLID-ESGEIRCTAFRDQCEKFYDMIETGNVYYISRC 245
Query: 297 SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDL 356
+LK A K F L ND E+ + + + C+E+ IP QF F PI+ +E E N ++D+
Sbjct: 246 TLKAANKQFCTLKNDYEMTMTGDTEIIPCHENSDDIPTLQFDFCPISQIESKEKNDLLDV 305
Query: 357 IGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSG 415
+GVV+ + ++ R G E KR +++ D SG V +TLWG D D
Sbjct: 306 LGVVTTFNDVQQIIQRTTGRELLKRDINIVDDSGTMVCVTLWGKQAED--------FDGS 357
Query: 416 VFPILAVKAGRVSDFN-GKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRD 474
PI+A+K RV +FN GK + + ++ +PD PEAHRL+ W+ G + S+S+
Sbjct: 358 NNPIIAIKGARVGEFNGGKNLSLLHSSVFEKDPDLPEAHRLRGWYTAVGHSENIKSLSKT 417
Query: 475 SLSVGRADIRK---TVSQIKDEGLGTKEK-PDWITVSATIVYIKCDNFCYTACPIMIGDR 530
G D T + + LG K D TV ATI I+ +N Y ACP+
Sbjct: 418 G---GGGDFNAPLYTFEEATEARLGEKMNLADSFTVVATINMIRVENAIYKACPV----E 470
Query: 531 PCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSA 590
C KK+++ G + C++C++ YR + I D TG W+TAF E AE+I+GMSA
Sbjct: 471 SCKKKLIDQSTGVFRCEKCNKDYPNSIYRLLASMNIVDATGSRWITAFSEDAEKILGMSA 530
Query: 591 KDLYSLKYVDQND--EKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYS 648
++L LK D + +KFGE A+F K++F L+ K E F DE R+K NY
Sbjct: 531 QELGELKENDNDAFLQKFGE----ASFKKFIFTLRAKSEVFQDEMRIKHVCSSVAPVNYK 586
Query: 649 SETRFILDLMDKL 661
+ ++D + KL
Sbjct: 587 TYLTHLIDRVSKL 599
>gi|427789109|gb|JAA60006.1| Putative replication factor a 1 rfa1 replication factor a 1 rfa1
[Rhipicephalus pulchellus]
Length = 600
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 212/669 (31%), Positives = 340/669 (50%), Gaps = 101/669 (15%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQ-GMLATQRNELVTSGLLQIGSV 60
PVLQV++ K + S + R+R++LSDG + ML TQ N ++T+ + +V
Sbjct: 22 PVLQVLNFKPISS-------NTADRYRLLLSDGVQCHTYAMLGTQLNGMITNNEIDKFAV 74
Query: 61 VRLTKFTCNVIQ-NRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
V+L K+ CNV+ ++ ++IV+DL VI K +G R S P S +G Q
Sbjct: 75 VQLDKYMCNVVSPDKKVLIVLDLTVIA-KGSTVG-----CRLGSPVIPASSSGAAQ---- 124
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
P D G+N PP + + SF N
Sbjct: 125 ---------------PTDG---------GANKPPLQQNSAAPSAAPSFGN---------- 150
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVT 239
R Y ++ + P + S + Y NR WTI+ARVT
Sbjct: 151 ---RAYPASTSDVVVVP-IASLTPYQNR------------------------WTIRARVT 182
Query: 240 AKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLK 299
K +R+++N +G+GK+F DLLD + GEIR T FNA D+FY +E K+Y +SR +K
Sbjct: 183 NKSGIRNWSNSKGEGKLFSMDLLD-ESGEIRATAFNAECDRFYDVIEVNKVYYISRAVIK 241
Query: 300 PAQK--NFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLI 357
+K +F+ + ND E+ L + + C + +IP QF+F PI+ ++ + +SV+D+I
Sbjct: 242 NVKKGYSFSSIKNDFEMSLISETTITPCDDVTPNIPTLQFNFVPISRLQEISKDSVIDVI 301
Query: 358 GVVSYISPTASLMRKNGT-ETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGV 416
GV S ++ R+ + E +KR + L D SG V LTLWG+ D
Sbjct: 302 GVCKSASDVQTVTRRTTSQELKKRDVSLVDRSGTEVSLTLWGD--------QAEKFDGSD 353
Query: 417 FPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGK--NTQSVSISRD 474
P++AVK RVSDF+G + IS++ L + PD PE+H L W+ +EG T S+S R
Sbjct: 354 NPVVAVKGARVSDFSGVSLSLISSSMLQVNPDIPESHALMGWYSREGTLLQTHSLSTQRG 413
Query: 475 SLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNK 534
G A+ K+++Q K EGLG +KPD+ +V A + I+ +N Y ACP CNK
Sbjct: 414 GPMGGNANW-KSIAQAKAEGLGQGDKPDYYSVKACVSIIRKENCLYKACP----SENCNK 468
Query: 535 KVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLY 594
KV++ G + C++C Q +E +R ++ + D + WVT F + AE ++G SA+DL
Sbjct: 469 KVVDLQTGYYRCEKCAQETMEFKWRLLVSANLTDFSDGQWVTCFGKEAETLIGASAEDLG 528
Query: 595 SL-KYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRF 653
+ + D ++ +++ + F ++F+L+ K E ++DE R+K++V+ +Y T+
Sbjct: 529 EMYSNSSKEDSRYEDILNDVPFKPFIFRLRTKMEVYNDESRLKTSVMSVSPVDYIEYTKK 588
Query: 654 ILDLMDKLK 662
+L + +LK
Sbjct: 589 LLKDIAELK 597
>gi|255723748|ref|XP_002546803.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240134694|gb|EER34248.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 620
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 193/671 (28%), Positives = 336/671 (50%), Gaps = 84/671 (12%)
Query: 1 MP-VLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGS 59
MP +LQ+ ++K V + +++R++L+DG S G++ NE + + Q S
Sbjct: 22 MPMILQITNIKSV------DLPNDVKKYRILLNDGVYSTHGLIDETCNEYIKNNNCQRYS 75
Query: 60 VVRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
+V++ F+ Q VI +L+++ +P S +
Sbjct: 76 IVQVNSFSIFATQKHFFVI-KNLEIL---------------------------SPTSEKS 107
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
V L +P DT YF G + + +S S
Sbjct: 108 SVPL----------IPLDT----------------YFAEHPNEGHLTLTKKSEGDSPAPA 141
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVT 239
S P A+ + P ++ P + AN + P R + I ++PY WTIKARV+
Sbjct: 142 TPSIPQATTASVQPFQAQVKQP-VPANTAASARGPAP-RTLSIELISPYQNNWTIKARVS 199
Query: 240 AKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLK 299
KG+LR ++N +G+GKVF + LD + EI+ + FN A++ Y +E GK+Y +S+ ++
Sbjct: 200 YKGDLRTWSNSKGEGKVFSVNFLD-ESDEIKASAFNETAERAYRSLEEGKVYYISKARVQ 258
Query: 300 PAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGV 359
A+K FN L + E+ LD + + C+ D++ +P+ F+F ++ V+ +E NS++D+IGV
Sbjct: 259 AARKKFNTLSHPYELTLDRDTEITECF-DESDVPKLNFNFVKLDQVQNLEANSIIDVIGV 317
Query: 360 VSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFP 418
+ + P ++ K+ G E +R + + D +G SVEL LW N D + G
Sbjct: 318 LKTVLPPFTITAKSTGKEFNRRNISIVDETGFSVELGLWNNTAMD------FSVEEGT-- 369
Query: 419 ILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSV 478
++A K +V+DFNGK + + P PE+ LK W++ G N Q ++ D S
Sbjct: 370 VVAFKGCKVTDFNGKTLSLTQAGSIVPNPGTPESFTLKGWYDNVGVNEQFKTLKTDKNSG 429
Query: 479 GRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMI----GDRP--- 531
R R +++Q +E +GT +KPD+ +V A+I + K DNF Y AC + G RP
Sbjct: 430 DRIAQRVSIAQALEEHVGTGDKPDYFSVKASITFCKPDNFAYPACTNQVQHGDGSRPPQL 489
Query: 532 CNKKVM-NNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSA 590
CNKK++ + DG W C++CD + + YRYIL + D TG W+T F E A++++ + A
Sbjct: 490 CNKKLIYQDHDGTWRCEKCDANYDQAAYRYILSCSVTDSTGQMWLTLFDEQAKKLLDIDA 549
Query: 591 KDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSE 650
+L K ++N + + + F +++F+++ +++T++DE + + NY+SE
Sbjct: 550 TELQRKK--EENPDAASAIFTSVLFKEFVFRVRARQDTYNDELKTRYQAAGLYDINYTSE 607
Query: 651 TRFILDLMDKL 661
F+ +D+L
Sbjct: 608 AEFLTKELDQL 618
>gi|383854350|ref|XP_003702684.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Megachile rotundata]
Length = 591
Score = 300 bits (767), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 167/430 (38%), Positives = 246/430 (57%), Gaps = 19/430 (4%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PI AL+PY +W IKARV +K ++R ++N RG+GK+F DL+D + GEIR T F D+
Sbjct: 158 PIVALSPYQNRWVIKARVLSKSDIRTWSNSRGEGKLFSMDLVD-ESGEIRCTAFRDQCDK 216
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
FY +E GK+Y +SR +LK A K FNHL ND E+ L + + C++ IP QF+F+
Sbjct: 217 FYDMLEVGKVYYISRATLKTANKQFNHLKNDYEMTLTGDTEIIPCHDGGNEIPTLQFNFQ 276
Query: 341 PINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWGN 399
PI+DVE E N +D+I +V + L +N G E +KR + L D S V TLWG
Sbjct: 277 PISDVETKEKNEYIDVIAIVKSCADLQLLTSRNTGREMKKRDIFLVDQSSTMVCFTLWGK 336
Query: 400 FCNDDGLRLQHMCDSGVFPILAVKAGRVSDFN-GKVVGTISTTQLFIEPDFPEAHRLKEW 458
+ D P++AVK RV +FN GK + ++S+T + I PD PEAHRL W
Sbjct: 337 EAEE--------FDGSNNPVIAVKGARVGEFNGGKNLSSLSSTVIQINPDIPEAHRLHGW 388
Query: 459 FEKEGKNTQSVSISRDSLSVGR-ADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDN 517
F G N ++ SISR G + T + ++ LG K P+ V ATI I+ +N
Sbjct: 389 FNATGHNEEAKSISRTFGGGGNISGPWLTFKEAREMELGFK-GPEMYMVKATINMIRIEN 447
Query: 518 FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTA 577
Y +CP C KK+++ + + C++CD+ YR + + D T W TA
Sbjct: 448 AVYKSCP----SESCKKKLIDQANDMYRCEKCDKEYPNYRYRLLASLSLADWTDNQWATA 503
Query: 578 FQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKS 637
F E AE+I+G++A++L L+ + +++ + E +ATF +LFK++VK ETFSDE R+K+
Sbjct: 504 FSEEAEKILGITAQELGELQ--ENDNDAYLEKFADATFKSFLFKIRVKLETFSDENRLKA 561
Query: 638 TVVKAERYNY 647
T V +Y
Sbjct: 562 TCVAVNPLDY 571
>gi|406694919|gb|EKC98235.1| hypothetical protein A1Q2_07466 [Trichosporon asahii var. asahii
CBS 8904]
Length = 591
Score = 300 bits (767), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 218/671 (32%), Positives = 333/671 (49%), Gaps = 117/671 (17%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQV+ +K + S Q R+R++LSDG Q MLATQ N LV +
Sbjct: 25 PVLQVLSVKRINSPASGAQA--TDRYRVILSDGEYFIQSMLATQLNHLVEND-------- 74
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGV 121
L K T + + +I V + +II + +R + N G GNP
Sbjct: 75 ELEKNTVIKLTSFVINTVQNRKLII--------ILALERQNWN---GQKVGNP------- 116
Query: 122 SLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEF 181
V Q A PA PE + +N +AS
Sbjct: 117 -------VNVDQRAAGGVASPA--------------PE----AAPVTNGAAS-------- 143
Query: 182 SRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSR----IIPIAALNPYMGKWTIKAR 237
R ASN AR AP RG PSR I PI L+PY KWTIKAR
Sbjct: 144 -RGGASN-ARPAAAP----------RG-------PSRDMGPIFPIEGLSPYQNKWTIKAR 184
Query: 238 VTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGS 297
VT K +++H++NQRG+GK+F L+D + GEIR T FN D FY +E GK++ +S+
Sbjct: 185 VTQKSDIKHWSNQRGEGKLFSVTLMD-ETGEIRATGFNDQVDAFYQLLEEGKVFFISKAR 243
Query: 298 LKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLI 357
+ A+K F++++N+ EI + + E + S+P +++F +ND+E ++ ++ D+I
Sbjct: 244 INIAKKQFSNVNNEYEITFENQT------EIEPSVPEIKYNFTKLNDLESLQKDATTDVI 297
Query: 358 GVVSYISPTASLMRKNGTET-QKRTLHLRDMSGRSVELTLWG----NFCNDDGLRLQHMC 412
GVV + + K + KR + L D SG+SV LTLWG NF + D
Sbjct: 298 GVVQEVHDLGQITSKATQKPFNKRDIQLVDQSGQSVRLTLWGKTAENFTHYD-------- 349
Query: 413 DSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNT--QSVS 470
P++A K +VSDF G+ + S+ + I P+ EA L+ W++ G+ T + +
Sbjct: 350 ----HPVVAFKGVKVSDFGGRSLSMFSSATMAINPNTDEACALRGWYDSVGEKTNFKQYT 405
Query: 471 ISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDR 530
S +V R D KT+ Q KDE LG +K D+ +V ATI+YIK + F Y ACP
Sbjct: 406 NSGAMNAVSRPDEIKTIGQAKDEQLGMTDKTDYFSVCATILYIKQETFSYPACP----GE 461
Query: 531 PCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSA 590
CNKK+++ G W C++C+++ +RYILQ + DHTG W+T F E E+IMG+SA
Sbjct: 462 GCNKKLIDEG-AEWRCEKCNRTYPGPVHRYILQMNVIDHTGSFWITGFNEVGEQIMGVSA 520
Query: 591 KDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSE 650
+L+ LK ++D + + A ++ FK+ K++ F+D RV+ NY+
Sbjct: 521 NELFKLK--QESDPEAEKYFTRAAGREWDFKIMAKQDFFNDTARVRYQARSCAPINYAQS 578
Query: 651 TRFILDLMDKL 661
++ ++ ++ +
Sbjct: 579 SQALVGKIEAM 589
>gi|15241489|ref|NP_196419.1| RPA70-kDa subunit B [Arabidopsis thaliana]
gi|6562316|emb|CAB62614.1| replication factor A-like protein [Arabidopsis thaliana]
gi|332003852|gb|AED91235.1| RPA70-kDa subunit B [Arabidopsis thaliana]
Length = 604
Score = 299 bits (766), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 167/455 (36%), Positives = 260/455 (57%), Gaps = 17/455 (3%)
Query: 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAV 277
R+ P+ +LNPY G WTIK RVT KG +R Y N RG+G VF+ +L D +G +I+ T FNA
Sbjct: 156 RVHPLVSLNPYQGSWTIKVRVTNKGVMRTYKNARGEGCVFNVELTDEEGTQIQATMFNAA 215
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
A +FY + E GK+Y +SRGSLK A K F + ND E+ L+ S V+ ++ P +F
Sbjct: 216 ARKFYDRFEMGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASNEEMFTPETKF 275
Query: 338 HFRPINDVEGMEN-NSVVDLIGVVSYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVELT 395
+F PI+++ N ++D+IGVV +SPT S+ RKN E KR + L D + ++V ++
Sbjct: 276 NFVPIDELGTYVNQKDLIDVIGVVQSVSPTMSIRRKNDNEMIPKRDITLADETKKTVVVS 335
Query: 396 LWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRL 455
LW + G L M D+ P++A+K+ +V F G + TIS + + I P+ PEA +L
Sbjct: 336 LWNDLATGIGQELLDMADN--HPVIAIKSLKVGAFQGVSLSTISRSNVVINPNSPEATKL 393
Query: 456 KEWFEKEGKNTQSVSI------SRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSAT 509
K W++ EGK T +I S ++ S R +S I +EKP + + A
Sbjct: 394 KSWYDAEGKETSMSAIGSGMSSSANNGSRSMYSDRVFLSHITSNPSLGEEKPVFFSTRAY 453
Query: 510 IVYIKCD-NFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQD 568
I +IK D Y AC + CNKKV D + C+ C + EC RYI+ ++ D
Sbjct: 454 ISFIKPDQTMWYRAC------KTCNKKVTEAMDSGYWCESCQKKDQECSLRYIMAVKVSD 507
Query: 569 HTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEET 628
TG TW++AF + AE+I+G +A DL LK + +F ++ AT++ +LF++ V ++
Sbjct: 508 STGETWLSAFNDEAEKIIGCTADDLNDLKSEEGEVNEFQTKLKEATWSSHLFRISVSQQE 567
Query: 629 FSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKS 663
++ E+R + TV ++++ETR +L + K K+
Sbjct: 568 YNSEKRQRITVRGVSPIDFAAETRLLLQDISKNKT 602
>gi|331228428|ref|XP_003326881.1| hypothetical protein PGTG_08418 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309305871|gb|EFP82462.1| hypothetical protein PGTG_08418 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 618
Score = 299 bits (765), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 191/625 (30%), Positives = 321/625 (51%), Gaps = 81/625 (12%)
Query: 25 QRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNRMIVIVMDLDV 84
+R+R+++SDG MLATQ N V ++ S++R+ +T NVI +R +V+++ ++V
Sbjct: 44 ERWRIIISDGQMFITAMLATQLNHFVQENQIKKHSILRVPSYTVNVIGSRHVVVLLGVEV 103
Query: 85 I-IDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPA 143
+ D + IG PV + ++NA + ++NT+ PA
Sbjct: 104 VQSDYPERIGNPV--------------NCDAEANAN----KDNSNTK---------PAPA 136
Query: 144 ARHVGSNLPPNY--FKPEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSP 201
SN+ P KP++ P+P +P A P P ++
Sbjct: 137 VLANRSNVAPPKPDVKPDIDV-------------KPKPSSYKPNIP--ASKPNKPGVRRT 181
Query: 202 SMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDL 261
+ IPIA ++P+ W IKARV+ K E++ ++N RGDGK+F
Sbjct: 182 GNH---------------IPIAGVSPFANNWKIKARVSQKTEIKRWSNSRGDGKLFSVTF 226
Query: 262 LDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSM 321
LD D G+IR T FN D Y ++ G++YL+SRG + A+K +N +D EI + T+
Sbjct: 227 LD-DSGQIRATGFNDAVDNLYDSLQEGQVYLISRGKITIAKKPYNTTGHDYEIVFENTTE 285
Query: 322 VQLCYEDDASIPRQQFH-FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTET-QK 379
V+ C D A P+ + ++++ +E ++V+D++ V+ + + ++ K +T K
Sbjct: 286 VEEC-GDSADTPKIILNKLTKLSELNDVEKDAVIDVVAVLKDVGEISEIVSKATQKTIVK 344
Query: 380 RTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTIS 439
R + L D S S+ +TLWG + ++ I+A + +V DF G+ + IS
Sbjct: 345 RDITLIDQSAYSIRMTLWG--------KTAETFEAPTESIVAFQGVKVGDFGGRNLSMIS 396
Query: 440 TTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRA---DIRKTVSQIKDEGLG 496
++ + + PD PEA LK W++ EG N + S + +GR D KTV++IKD LG
Sbjct: 397 SSVMLVNPDIPEAFDLKGWYDNEGVNAKIQSFANTGTGIGREITEDSLKTVAEIKDTQLG 456
Query: 497 TKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVEC 556
E+ D+ ATI+YIK + Y ACP CNKK++ +GD W C++CD+
Sbjct: 457 MNERGDYFNFRATIMYIKSETISYPACPT----ERCNKKLLRDGDDEWRCEKCDKLFPAP 512
Query: 557 DYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFT 616
D+RY++Q +QDHTG W++ F E + I+ M+A +L +K D+ ++ ++V +AT
Sbjct: 513 DHRYLIQMTVQDHTGTLWLSGFNEVGQIILPMNANELIGIKETDE--AQYQKIVTDATAK 570
Query: 617 KYLFKLKVKEETFSDEQRVKSTVVK 641
Y + KEET++D R K +V++
Sbjct: 571 TYTMVCRAKEETYNDVNRTKYSVLR 595
>gi|401626961|gb|EJS44874.1| rfa1p [Saccharomyces arboricola H-6]
Length = 621
Score = 298 bits (764), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 184/649 (28%), Positives = 322/649 (49%), Gaps = 94/649 (14%)
Query: 29 MVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNR--MIVIVMDLDVII 86
+++SDG + +L Q S LQ G ++R+ +++ R +++V D +++
Sbjct: 48 IMISDGVYHMKALLRNQAASKFQSMELQRGDIIRVMIAEPAIVRERKKYVLLVDDFELVQ 107
Query: 87 DKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTD----AVP 142
+ + + Q + N S + +L+ + T S T+ +P
Sbjct: 108 SRAEMVN------------QASTFLDNYFSEHSNETLKDEDITDNSSATNQTNPGNVGLP 155
Query: 143 AARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPS 202
H SNL A F N+S+S +P
Sbjct: 156 DMLHSNSNL---------NASEKKFHNESSSSQKSKP----------------------- 183
Query: 203 MYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL 262
I I L+PY WTIKARV+ KGE++ ++NQRGDGK+F+ + L
Sbjct: 184 ----------------IFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFL 227
Query: 263 DSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMV 322
D+ GEIR T FN A +F ++ GK+Y VS+ L+PA+ F +L + E+ LD ++V
Sbjct: 228 DT-SGEIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVV 286
Query: 323 QLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTL 382
+ C+ D++++P+ F+F ++ ++ E NS VD++GV+ I+P L + G + +R +
Sbjct: 287 EECF-DESNVPKTHFNFIKLDAIQNQEVNSNVDVLGVIQTINPHFELTSRAGKKFDRRDI 345
Query: 383 HLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGV--FPILAVKAGRVSDFNGKVVGTIST 440
+ D SG S+ + LW Q D + + A+K RV+DF GK + +
Sbjct: 346 TIVDDSGFSISVGLWN----------QQALDFNLPEGSVAAIKGVRVTDFGGKSLSMGFS 395
Query: 441 TQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADI--------RKTVSQIKD 492
+ L P+ PEA+ LK W++ +G+N ++ ++ G++ R T+++ +
Sbjct: 396 STLIPNPEIPEAYALKGWYDSKGRNANFTTLKQEPGMGGQSAAGLTKFIAQRITIARAQA 455
Query: 493 EGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQS 552
E LG EK D+ +V A + ++K DNF Y AC + CNKKV+ DG W C++CD +
Sbjct: 456 ENLGRSEKGDFFSVKAAVSFLKVDNFAYPAC----SNENCNKKVLEQPDGTWRCEKCDTN 511
Query: 553 VVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRN 612
++RYIL I D T W+T F + A++++G+ A L SLK D N+ F ++ ++
Sbjct: 512 NASPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANALMSLKEEDPNE--FTKITQS 569
Query: 613 ATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
+Y F+++ +E+T++D+ R++ TV NY +E ++ D + K+
Sbjct: 570 IQMNEYDFRIRAREDTYNDQSRIRYTVANLHSLNYKAEADYLADELSKV 618
>gi|452840129|gb|EME42067.1| hypothetical protein DOTSEDRAFT_72982 [Dothistroma septosporum
NZE10]
Length = 621
Score = 297 bits (760), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 159/463 (34%), Positives = 269/463 (58%), Gaps = 19/463 (4%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
+ I PI A++PY KWTIKAR T+KG+++ ++N+ G+GK+F + LD D GEIR+T FN
Sbjct: 171 ANITPIEAISPYTHKWTIKARCTSKGDIKTWHNKNGEGKLFSANFLD-DSGEIRMTGFND 229
Query: 277 VADQFYHQVEAGKIYLVSRG-SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQ 335
DQ+Y ++ G +Y +S ++PA+K F++L+ND E+ + + ++ ED+ +P+
Sbjct: 230 AVDQWYDTLQEGSVYYISSPCRVQPAKKQFSNLNNDYELTAEKDTQIEKA-EDNDGVPQV 288
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVEL 394
+++F I ++ +E +S +D+IGV+ +S + ++ K ++ KR L L D +G +V L
Sbjct: 289 RYNFTTIAALQEIEKDSTIDVIGVLQDVSEVSEIVSKTTSKPYSKRELTLVDNTGYNVRL 348
Query: 395 TLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
T+WG + D ++A K +VSDF G+ + +S+ + PD EA++
Sbjct: 349 TVWG--------KTAETLDIQPESVVAFKGVKVSDFGGRSLSLLSSGSMSANPDIEEAYK 400
Query: 455 LKEWFEKEGKNTQSVSISRDSLSVG-----RADIRKTVSQIKDEGLGTKEKPDWITVSAT 509
LK W++ G+ S + +VG + + KT++Q++DEGLG + DW ++ AT
Sbjct: 401 LKGWYDGAGRTENFASHANTMATVGATSGGKGNDTKTIAQVRDEGLGMTDDTDWFSIKAT 460
Query: 510 IVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDH 569
I+Y+K DNF Y AC +PCNKKV+ N G W C++CD+S YRYI+ + DH
Sbjct: 461 IIYVKQDNFAYPACRTT-DPQPCNKKVIENEPGNWRCEKCDKSWDAPKYRYIMSVNVSDH 519
Query: 570 TGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETF 629
TG W++ F E E IMGM A DL ++K + +D++ + +A + F++K K + F
Sbjct: 520 TGQIWLSCFDEVGERIMGMPANDLMAMKE-EGDDKRVTDAFGDANCQTFNFRVKAKMDNF 578
Query: 630 SDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSGDSTSFALK 672
D+QRV+ V A ++S E + ++ + D S ++
Sbjct: 579 QDQQRVRYQVQYANPLDFSREATKLAQIIKQYNMADDNSLFVQ 621
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 69/120 (57%), Gaps = 13/120 (10%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PV Q + +K + Q Q+R+R+V +D QGM+A Q N L+ G L+ GS+
Sbjct: 25 PVFQCVQIKPMA-----QANGGQERWRVVFNDTVNFIQGMIAIQSNHLINDGKLKKGSIC 79
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIID--KCDPIGKPVPAQ--RPSSNE----QPGSVTGN 113
RL + N ++++ I+I++DL+V+ D + D +G+PV +P + E QPG++ GN
Sbjct: 80 RLNSYQANYVKDKYILIIIDLEVLEDYGEQDKLGQPVALDNAKPEAQEDVKPQPGNIAGN 139
>gi|407928380|gb|EKG21239.1| Nucleic acid binding OB-fold tRNA/helicase-type [Macrophomina
phaseolina MS6]
Length = 616
Score = 297 bits (760), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 160/454 (35%), Positives = 263/454 (57%), Gaps = 15/454 (3%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
+++ PI AL+PY KWTIKAR K +++ ++N+ G+GK+F +LLD + GEIR T F
Sbjct: 174 AQLFPIEALSPYTHKWTIKARCVHKSDIKTWHNKNGEGKLFSVNLLD-ESGEIRATGFKE 232
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
DQ Y G +Y +S S+K A+K F++++ND E+ S+V+ +D S+P+ +
Sbjct: 233 QCDQLYDTFREGGVYYISNCSVKLAKKQFSNVNNDYELTFQNDSIVEPA-DDPDSVPQVR 291
Query: 337 FHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTET-QKRTLHLRDMSGRSVELT 395
++F I D++ +E N+ +D IGV+ + + ++ K ++ QKR L + D S SV LT
Sbjct: 292 YNFTHIGDLQNVEPNTTIDTIGVLKDVGEVSEIISKTTSKPYQKRELTIVDDSMTSVRLT 351
Query: 396 LWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRL 455
+WG D+ ++A K +VSDF G+ + +S+ + I PD EAH+L
Sbjct: 352 IWG--------PTAQGFDASPESVVAFKGVKVSDFGGRSLSLLSSGSMNINPDIDEAHKL 403
Query: 456 KEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKC 515
K W++ +G+N Q S + S R+ KT++Q+ DE +G ++P++ + ATIVY+K
Sbjct: 404 KGWYDAQGRNDQFTSHQQSSTGTSRSRKYKTIAQVNDEQIGMSDQPEYFDLKATIVYVKH 463
Query: 516 DNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWV 575
DNF Y AC CNKKV+ G W C++CD + + +YRYI+ + DHTG W+
Sbjct: 464 DNFAYPAC----ASAGCNKKVVEINPGEWRCEKCDITHTKPEYRYIMSCNVSDHTGQLWL 519
Query: 576 TAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRV 635
+ F + + IMG SA +L ++ ++N KF + +AT ++F +K K +TF D+QRV
Sbjct: 520 SCFDDSGKIIMGKSADELVEIRDNEENPSKFEQSFVDATCKTFIFNVKAKMDTFQDQQRV 579
Query: 636 KSTVVKAERYNYSSETRFILDLMDKLKSGDSTSF 669
+ V A+ N S E +++ + + + DS S
Sbjct: 580 RYQVSSAKELNLSFECARLIETLKQYQINDSDSL 613
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 19/124 (15%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P+LQ + +K + SK ++ R+R+VLSD Q ML+ Q+N L+T GLL+ GS++
Sbjct: 28 PILQCVQIKHMDSKAGEE------RYRIVLSDVDNFIQSMLSQQKNNLITEGLLKKGSMI 81
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIID--KCDPIGKPV--------PAQRPSSN---EQPG 108
R+ + VI+ R I +V+DLDV+ + + + IG PV P P + EQP
Sbjct: 82 RMKSYNPQVIKERKIFVVLDLDVLSEYGELEKIGNPVGLEANNAGPKVEPKAEPKTEQPA 141
Query: 109 SVTG 112
+ G
Sbjct: 142 DIGG 145
>gi|344303316|gb|EGW33590.1| hypothetical protein SPAPADRAFT_135958 [Spathaspora passalidarum
NRRL Y-27907]
Length = 626
Score = 297 bits (760), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 157/466 (33%), Positives = 267/466 (57%), Gaps = 26/466 (5%)
Query: 210 VGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEI 269
V S P RI PI ++PY WTIKARV+ KG+LR ++N +G G++F + LD + EI
Sbjct: 171 VSASGAPIRITPIETISPYQNNWTIKARVSYKGDLRTWSNAKGTGQLFSVNFLD-ESDEI 229
Query: 270 RVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDD 329
+ T FN A++ Y+ +E GK+Y +S+ + A+K FNHL + EI ++ + + C+ D+
Sbjct: 230 KATAFNETAERAYNLLEEGKVYYISKARVAAAKKKFNHLTHPYEITMEKDTEITECF-DN 288
Query: 330 ASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYIS-PTASLMRKNGTETQKRTLHLRDMS 388
++P+ F+F +N ++ +E+N++VD+IG + ++ P + G E +R + + D +
Sbjct: 289 TNVPKLHFNFVKLNKIQDLESNAIVDVIGALKIVNEPFKITAKSTGKEFDRRNITIVDET 348
Query: 389 GRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPD 448
G ++E+ LW N ++ + G I+A K +V D+NG+ + + P+
Sbjct: 349 GFAIEMGLWNNTA------VEFNIEQG--SIIAFKGCKVQDYNGRSLTLTQQGSVIPNPE 400
Query: 449 FPEAHRLKEWFEKEGKNT--QSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITV 506
PEA++LK W++ +G N +S+ + S + + RK+++Q +DE LG EKPD+ TV
Sbjct: 401 SPEAYQLKGWYDNQGINESFKSLKVESSGASSNQIENRKSIAQAQDENLGKGEKPDYFTV 460
Query: 507 SATIVYIKCDNFCYTACPIMIGD----------RPCNKKVMNN-GDGRWHCDRCDQSVVE 555
ATI Y K D F Y ACP ++ +PCN+K++ DG W C+RCD + E
Sbjct: 461 KATISYTKPDTFAYPACPNVVASNAGSQQARPSQPCNRKLVEQPTDGTWRCERCDINYPE 520
Query: 556 CDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATF 615
YRYI I D TG WVT F A ++ G+ A +L +K DQ++ F + + +F
Sbjct: 521 PTYRYIYNCSILDETGQIWVTLFDNEARKLFGIDAGELTKIKEEDQDE--FTRRIEDISF 578
Query: 616 TKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
+Y F+L+ +++T++D+ RV+ V + +YS+E ++ +D L
Sbjct: 579 KEYQFRLRARQDTYNDQLRVRYQAVGIDFIDYSTEAEYLCKQLDNL 624
>gi|255547187|ref|XP_002514651.1| replication factor A 1, rfa1, putative [Ricinus communis]
gi|223546255|gb|EEF47757.1| replication factor A 1, rfa1, putative [Ricinus communis]
Length = 622
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 169/470 (35%), Positives = 269/470 (57%), Gaps = 22/470 (4%)
Query: 204 YANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLD 263
+ N + + R+ P+ +LNPY G WTIK RVT+KG +R Y N RG+G VF+ +L D
Sbjct: 161 HKNMAPTARMAMTRRVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTD 220
Query: 264 SDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQ 323
DG +I+ T FN A +FY + + GK+Y +S+GSLK A K F + ND E+ L+ S V+
Sbjct: 221 EDGTQIQATMFNEAARKFYDKFQLGKVYYISKGSLKVANKQFRTVQNDYEMNLNENSQVE 280
Query: 324 LCYEDDASIPRQQFHFRPINDV-EGMENNSVVDLIGVVSYISPTASLMRK-NGTETQKRT 381
++ A IP +F+F PI+ + + N +VD+IGVV +SPT S+ RK N KR
Sbjct: 281 EASDEAAFIPETKFNFVPIDQLGPYVSTNELVDVIGVVQSVSPTMSIRRKSNNDIVPKRD 340
Query: 382 LHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTT 441
+ + D + ++V ++LW + D G L M D P++A+KA +V DF G + T+ +
Sbjct: 341 ITIADETKKTVVVSLWNDLATDVGQELLDMADKS--PVVAIKALKVGDFQGVSLSTLGRS 398
Query: 442 QLFIEPDFPEAHRLKEWFEKEGKNTQSVSI------SRDSLSVGRADIRKTVSQI-KDEG 494
+ + PD PE+ +LK WF+ EGK T S+ S S R ++S I +
Sbjct: 399 IIQVNPDTPESKKLKSWFDSEGKETSLASVGAGLSPSTKSGGGSMYSDRVSISHITSNPS 458
Query: 495 LGTKEKPDWITVSATIVYIKCD-NFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSV 553
LG+ +KP + ++ A I +IK D + Y AC + CNKKV G + C+ C ++
Sbjct: 459 LGS-DKPAFFSIRAYISFIKPDQSMWYRAC------KTCNKKVTEAIGGGYWCEGCQKND 511
Query: 554 VECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEV-VRN 612
EC RYI+ ++ D +G WV+AF E I+G SA +L LK Q D E+ ++
Sbjct: 512 AECSLRYIMVVKVSDASGEGWVSAFNNEGERIIGCSADELDKLK--SQEDGNSYELKLKE 569
Query: 613 ATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLK 662
AT++ +LF++ V + +++E+R + TV ++++E+RF+L+ + K+K
Sbjct: 570 ATWSPHLFRVSVAQNEYNNEKRQRITVRAVAPLDFAAESRFLLEEISKIK 619
>gi|320583428|gb|EFW97641.1| Subunit of heterotrimeric Replication Protein A (RPA) [Ogataea
parapolymorpha DL-1]
Length = 604
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 154/454 (33%), Positives = 264/454 (58%), Gaps = 31/454 (6%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQF 281
I L+PY WTIKARV+ K +++H++NQRGDGK+F+ +LLD + GEIR T FN VA++F
Sbjct: 160 IDQLSPYQNSWTIKARVSFKSDMKHWSNQRGDGKLFNVNLLD-ETGEIRATAFNQVAEKF 218
Query: 282 YHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRP 341
+ +E K++ +S+ S++ A+ F++L + E+ D ++++ C +DD+ +P+ F F P
Sbjct: 219 WDLLEENKVFYISKASMQMAKPQFSNLKHQYELQFDKDTIIEPC-DDDSDVPKLHFDFVP 277
Query: 342 INDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWGNF 400
++ V+ +EN +V+D+IG++ + ++ K+ G +R + L D S +V + LW
Sbjct: 278 LDQVQNLENGAVIDVIGILKEVKDKQEIVAKSTGKPFDRRDIVLVDKSQFAVNIGLWNKH 337
Query: 401 CNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFE 460
+ D V ++A K RV DF GK + I + + PD EA+++K W++
Sbjct: 338 ARE--------FDVPVGSVVAFKGCRVQDFGGKSLSLIPAATIVVNPDIEEAYKIKGWYD 389
Query: 461 KEGKNTQSVSISRDSLSVGRADI--------RKTVSQIKDEGLGTKEKPDWITVSATIVY 512
+G + SI+ +S S G + RKT+ Q++DE LG K+KPD+ ++ ATI +
Sbjct: 390 AQGSHQSFKSIALESGSSGATSLTSKQSILERKTIKQVQDEKLGLKDKPDYFSLKATISF 449
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
IK DNFCY AC CNKK++ +G W C++C+ + E +YRYIL + D TG
Sbjct: 450 IKTDNFCYPAC----RSEGCNKKLLEQDNGTWRCEKCNINHPEPNYRYILTVSVVDETGQ 505
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLK--YVDQNDEKFGE------VVRNATFTKYLFKLKV 624
W+T F E A +++G+SA +L LK D + E GE + N +F + L +++
Sbjct: 506 MWLTLFDEQAAQLLGLSAAELLKLKNDAEDPSIESVGENALKNFINENISFKEVLLRVRG 565
Query: 625 KEETFSDEQRVKSTVVKAERYNYSSETRFILDLM 658
K +++ + R + TV + +Y +E +++++
Sbjct: 566 KVDSYQGQDRARFTVASLAKVDYLAECEALVEIL 599
>gi|145353884|ref|XP_001421229.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581466|gb|ABO99522.1| predicted protein, partial [Ostreococcus lucimarinus CCE9901]
Length = 650
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 199/670 (29%), Positives = 342/670 (51%), Gaps = 54/670 (8%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++QV DLK + K + +RFR++ SDG + QG+ + N + G + +V+
Sbjct: 25 PIVQVFDLKEL--KTKPDADDAAKRFRVLASDGGFAAQGLFGAELNAMCERGEITKFTVL 82
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDP-IGKPVPAQRPSSNEQPGSVTGNPQSNATG 120
RL ++ N + R I+IVMD +V+ D+ D IG+P QPG+ T N +
Sbjct: 83 RLREYIVNDLNGRRILIVMDAEVM-DRYDAVIGQP-------RVWQPGTGT-NASTGMNA 133
Query: 121 VSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPE 180
+Q N PAA+ G GS A+ + P
Sbjct: 134 GGMQQQRNA--------YGGAPAAQV---------------EGYGSGGGNGANLATEPPR 170
Query: 181 FSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTA 240
S A Q Y + + G V ++E P I PI ALNPY +WTI+AR+T
Sbjct: 171 ASGGGYGGGAPAAQGQYRR------DGGAVARNEQPRSITPIHALNPYQNRWTIRARITT 224
Query: 241 KGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKP 300
ELR Y+N +G+GKV F +LD+DG EI+ CFN A + ++ G +Y +S+G++
Sbjct: 225 PLELRSYSNAKGEGKVLGFQVLDADGTEIKCVCFNDTAVRLAGELRQGLVYEISKGAIVT 284
Query: 301 AQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVV 360
+ ++ EI LD + C + + I + + F+ +++++ + +VD+IG+
Sbjct: 285 PRDPRYAIYQ-YEIKLDNHATFVPCPDAERDIKKMVYKFKKLSELDALNAGDMVDVIGIA 343
Query: 361 SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPIL 420
+ ++M+++G+ET KR++ +RD S S+E TLW + G +++ + SG P++
Sbjct: 344 YSVGDLTTIMKRDGSETSKRSVMIRDDSDTSIEFTLWDPHSVEIGGQIESLIASGEKPVI 403
Query: 421 AVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGK----NTQSVSISRDSL 476
AVK+ R+ +F GK +GT+S+T + I PD EA R++ WF++ G N+ S S
Sbjct: 404 AVKSSRLGEFQGKNMGTVSSTMVEINPDSSEATRMRVWFDQGGADKTFNSLSGSGGGGGK 463
Query: 477 SVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKC---DNFCYTACPIMIGDRPCN 533
G TV +I +E + E +++ I +IK NF Y ACP++ G+R C
Sbjct: 464 GSGELLSFSTVKEIGEELVAKNEGVAYLSCCGIIKHIKLGAEGNF-YPACPLLNGERTCQ 522
Query: 534 KKV-MNNGDGRWHCDR-CDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAK 591
KK+ ++ G W C+R + + D+RY+ DH+ WV+ F + ++I G+SA
Sbjct: 523 KKLRKDDSTGEWKCERHAGEKIEAADWRYMFSMVCMDHSDEYWVSVFGDKGDKIFGISAA 582
Query: 592 DLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSET 651
++ + D+ E++ ++ +A F Y ++KV + ++D R K ++V+ ER NY +
Sbjct: 583 EMKEI--YDREPERYENMISDALFNDYSLRVKVAVDNYTDVPRAKGSLVEIERVNYVDMS 640
Query: 652 RFILDLMDKL 661
+ ++ + KL
Sbjct: 641 KKLIGKIAKL 650
>gi|347965864|ref|XP_321709.4| AGAP001421-PA [Anopheles gambiae str. PEST]
gi|333470320|gb|EAA01767.4| AGAP001421-PA [Anopheles gambiae str. PEST]
Length = 612
Score = 296 bits (757), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 204/676 (30%), Positives = 334/676 (49%), Gaps = 108/676 (15%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDG-SRSQQGMLATQRNELVTSGLLQIGSV 60
PV+Q++ K + +Q + RFR+++SDG S MLATQ N+L L ++
Sbjct: 23 PVVQILGSKRIAGNGEQSE-----RFRLLISDGKSLYSFAMLATQLNDLQKQDKLPQYTI 77
Query: 61 VRLTKFTCNVIQ-----NRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQ 115
+R+ ++T +V+ + ++I+++L ++ + +G+ + P +T P
Sbjct: 78 IRIDRYTTSVVNRNEKGEKRVLIIVEL-TVLKEGSLVGEKIG--------DPQPMTDTPS 128
Query: 116 SNATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFS 175
AT T+ P DT GS S N ++
Sbjct: 129 QPAT---------TQAPARPMDT------------------------GSSSMGNGAS--- 152
Query: 176 NPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRII------PIAALNPYM 229
Y S ANR L G S P++ I PI++L+PY
Sbjct: 153 ---------YGS-----------------ANRSLSGGSAGPTQSIGDSLTHPISSLSPYQ 186
Query: 230 GKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGK 289
KW IKARV +K +R ++N +G+GK+F D++D + GEIR+T F D++Y +E K
Sbjct: 187 NKWVIKARVMSKSGIRTWSNAKGEGKLFSMDVMD-ESGEIRITAFKEQCDRYYDMIEVDK 245
Query: 290 IYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGME 349
+Y +S+ LKPA K + L ND E+ + ++VQ C + D S+P Q++F PI+ + ME
Sbjct: 246 VYFISKCQLKPANKQYTSLKNDYEMTMTNDTIVQECKDADGSMPEIQYNFVPISQIANME 305
Query: 350 NNSVVDLIGVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRL 408
N++VD+IG+ S K +G E +KR + L D S SV+LTLWG DD
Sbjct: 306 PNAMVDVIGMCKDASDVVQFTAKTSGRELRKREITLVDSSNASVQLTLWG----DDAQNF 361
Query: 409 QHMCDSGVFPILAVKAGRVSDF-NGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEG-KNT 466
+ P++ +K RVS+F GK +G I + + + PD AH+++ WFE G + +
Sbjct: 362 ----PATTHPVVLLKGARVSEFGGGKSLGLIGGSVMKLNPDLEMAHKVRGWFENGGSEAS 417
Query: 467 QSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIM 526
S +R + G + + + KD+ LG +KPD+ V A I IK N Y ACP
Sbjct: 418 VSSVSARTGGAAGVSTEWLSFQEAKDKNLGAGDKPDYFQVKAMIHTIKSANAVYKACP-- 475
Query: 527 IGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM 586
CNKKV++ +G++ C++C+ YR ++ I D T WVT F E AEE++
Sbjct: 476 --QADCNKKVIDQENGQFRCEKCNAEFPNFKYRLLVNMLIGDWTSNRWVTVFTELAEEML 533
Query: 587 GMSAKDL-YSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERY 645
G S++++ SL+Y + EK + + +F ++FKL+ K E F ++ R K++ V
Sbjct: 534 GKSSQEIGSSLEYQKEEAEK---LFTSISFKSFVFKLRTKVEYFGEQPRNKTSAVSVAPV 590
Query: 646 NYSSETRFILDLMDKL 661
N+ ++ + +L
Sbjct: 591 NHKEYNALLIKSIQEL 606
>gi|345494357|ref|XP_003427279.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Nasonia vitripennis]
Length = 584
Score = 296 bits (757), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 192/637 (30%), Positives = 312/637 (48%), Gaps = 95/637 (14%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQ-GMLATQRNELVTSGLLQIGSV 60
PV Q++ K + S R+R+++SDG S MLATQ N+L+T+ L S+
Sbjct: 21 PVFQILGHKKLASSASGD------RYRLLVSDGILSNSFTMLATQLNDLITNNTLSEHSI 74
Query: 61 VRLTKFTCNVIQN----RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQS 116
V++ ++ + + N R +++++ ++V+ VP + G V GN +
Sbjct: 75 VKIKRYAISTVNNGGTQRNVMVILSIEVL----------VPGH------EIGRVLGNVNA 118
Query: 117 NATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSN 176
N NTR + A R +NQ N
Sbjct: 119 N----------NTRTEEAAPAATLATALRS---------------------NNQQ----N 143
Query: 177 PRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKA 236
+P ++ P ++ + G+ PIAAL+PY +W IK
Sbjct: 144 AKP-------ASRINNPAVNHLNESLLNGGNGI--------NATPIAALSPYQNRWVIKV 188
Query: 237 RVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG 296
RVT K +R ++N RG+GK+F DLLD + GEIR T F D+FY +E GK+Y +SR
Sbjct: 189 RVTNKSPIRTWSNSRGEGKLFSIDLLD-ESGEIRCTAFRDQCDKFYDMIEIGKVYYISRC 247
Query: 297 SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDL 356
LKPA K FN+L ND E+ L S + +C E++ IP QF F PIN VE + ++D+
Sbjct: 248 QLKPANKQFNNLKNDYEMTLTSDSEIAICNEENEGIPTLQFDFVPINTVEAKSKDELIDV 307
Query: 357 IGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSG 415
+G+V S +L R G E +KR + + D + + +TLWG D D
Sbjct: 308 LGIVKTCSDIQTLTARTTGRELKKRDIGIVDENNDLITVTLWGTQAID--------FDGS 359
Query: 416 VFPILAVKAGRVSDFN-GKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRD 474
P++A+K ++ +FN GK + ++++ L ++PD P+AHRL+ WF+ G +S S+SR
Sbjct: 360 TNPVIAIKGAKIGEFNGGKNLSLVASSMLQVDPDIPQAHRLRGWFKTVGATEESRSLSRT 419
Query: 475 SLSVGRADI-RKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCN 533
G + T +++D G ++ P+ AT+ I+ +N Y +CP C
Sbjct: 420 LGGGGNLNGPWLTFKEVEDNRFGHQDMPNMFIAKATVNLIRAENALYKSCP----SEGCK 475
Query: 534 KKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDL 593
KKV++ +G + C++C + YR + + D TG W TAF E AE ++ SA++L
Sbjct: 476 KKVIDQSNGMYKCEKCSRDYPNFTYRLLASTNLVDWTGNQWATAFNEEAEVLLSASAQEL 535
Query: 594 YSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFS 630
LK +++ + + E + A F Y+FKL+++ E F+
Sbjct: 536 GELK--EKDGDTYMEKIGAAAFKSYIFKLRIRLENFN 570
>gi|256070189|ref|XP_002571426.1| replication factor A 1 rfa1 [Schistosoma mansoni]
Length = 555
Score = 295 bits (756), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 202/637 (31%), Positives = 311/637 (48%), Gaps = 100/637 (15%)
Query: 41 MLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQR 100
MLATQ N L+ L +V+R+ K CN IQN +V+++ LD+ I D V +
Sbjct: 1 MLATQLNHLIEENKLVNNTVIRVRKHVCNNIQNNKVVLIV-LDLDILGTDDSSGGVKS-- 57
Query: 101 PSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEV 160
EQP +V A PA S P P+
Sbjct: 58 ----EQPPTV-----------------------------AKPATTTSHSYEPEQKTPPKS 84
Query: 161 GAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRII 220
G P++ TP P P R+
Sbjct: 85 STG--------------------PFSGGQPSTPGTPGCGLP----------------RVF 108
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PI +LNPY +WTI+ARV+ K +R ++ Q DGK+F+F L+D + GEIRVT FNA D+
Sbjct: 109 PIQSLNPYQNRWTIRARVSQKSAIRTWSKQGRDGKLFNFTLVD-ESGEIRVTGFNAEVDK 167
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDD-ASIPRQQFHF 339
FY +E K+Y VSR +LK A K FN +ND E+ L S V C + D +S+P F+F
Sbjct: 168 FYDMIEVNKVYYVSRANLKAANKQFNTTNNDYEMTLHSDSQVLPCEDSDTSSLPETHFNF 227
Query: 340 RPINDVEGMENNSVVDLIGVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVELTLWG 398
I ++ S VD++GVV S+ K + E +KR L L D S V LTLWG
Sbjct: 228 ISIGKLDTQSPGSFVDIVGVVHECGEVQSITAKASQRELRKRELGLVDSSNCLVRLTLWG 287
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEP-DFPEAHRLKE 457
++ + H P++ +KA ++SDFNG+ + T+ L I P + PEA RLK
Sbjct: 288 EEA-ENFVGASH-------PVIVIKAAKISDFNGRSLSVSPTSSLLISPTNIPEAIRLKG 339
Query: 458 WFEKEGKNTQSVSISRDSL-SVGRADIRKTVS----------QIKDEGLGTKEKPDWITV 506
W+E EG+ + + + + S G AD + S +K G+G K D+ T
Sbjct: 340 WYEHEGRFSNFETFRSEMVGSSGGADGVSSSSGVLGGWNLLQDVKASGVGANVKADYFTC 399
Query: 507 SATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQI 566
AT+V++K +NF Y AC CNKKV++ G+G + C++C + +C +R +L +I
Sbjct: 400 KATVVFMKKENFMYQAC----STEGCNKKVIDLGNGLYRCEKCARETPDCKWRLLLMAKI 455
Query: 567 QDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKE 626
D TG WVT FQ+ AE ++G +A+ L ++K Q++ + +V + F ++F+L+ K
Sbjct: 456 ADITGDLWVTCFQDAAEVLLGQTAEKLGTIKST-QDETQLEKVFIESAFNSWIFRLRAKV 514
Query: 627 ETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKS 663
+ ++DE+R++ V + + +R +L ++ L +
Sbjct: 515 DRYNDEERLRVVVADVKPVDLVDYSRRLLKAINDLSA 551
>gi|365762222|gb|EHN03823.1| Rfa1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 661
Score = 295 bits (756), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 158/468 (33%), Positives = 266/468 (56%), Gaps = 32/468 (6%)
Query: 204 YANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLD 263
+ N G + P I I L+PY WTIKARV+ KGE++ ++NQRGDGK+F+ + LD
Sbjct: 211 FVNEGSNSQKSRP--IFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLD 268
Query: 264 SDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQ 323
+ GEIR T FN A +F ++ GK+Y VS+ L+PA+ F +L + E+ LD ++V+
Sbjct: 269 T-SGEIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVVE 327
Query: 324 LCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLH 383
C+ D++++P+ F+F ++ ++ E NS VD++G++ I+P L + G + +R +
Sbjct: 328 ECF-DESNVPKTHFNFIKLDAIQNQEVNSNVDVLGIIQTINPQFELTSRAGKKFDRRDIT 386
Query: 384 LRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGV--FPILAVKAGRVSDFNGKVVGTISTT 441
+ D SG S+ + LW Q D + + A+K RV+DF GK + ++
Sbjct: 387 IVDDSGFSISVGLWN----------QQALDFNLPEGSVAAIKGVRVTDFGGKSLSMGFSS 436
Query: 442 QLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRD---------SLSVGRADIRKTVSQIKD 492
L P+ PEA+ LK W++ +G+N ++ ++ SL+ A R T+++ +
Sbjct: 437 TLIPNPEIPEAYALKGWYDSKGRNANFTTLKQEPGVGGQSAASLTKFIAQ-RITIARAQA 495
Query: 493 EGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQS 552
E LG EK D+ +V A I ++K DNF Y AC + CNKKV+ DG W C++CD +
Sbjct: 496 ENLGRSEKGDFFSVKAAISFLKVDNFAYPAC----SNENCNKKVLEQPDGTWRCEKCDTN 551
Query: 553 VVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRN 612
++RYIL I D T W+T F + A++++G+ A L SLK D N+ F ++ ++
Sbjct: 552 NASPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLKEEDPNE--FTKITQS 609
Query: 613 ATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDK 660
+Y F+++ +E+T++D+ R++ TV NY +E ++ D + K
Sbjct: 610 IQMNEYDFRIRAREDTYNDQSRIRYTVANLHSLNYKAEADYLADELSK 657
>gi|291221744|ref|XP_002730881.1| PREDICTED: replication protein A1-like [Saccoglossus kowalevskii]
Length = 585
Score = 295 bits (755), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 213/675 (31%), Positives = 325/675 (48%), Gaps = 124/675 (18%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P+ Q++ LK + S Q R+R++LSDG RS MLATQ N+ VT G L + SV+
Sbjct: 22 PIFQILGLKKISSTVQSSTD----RYRLLLSDGQRSHSAMLATQLNKKVTDGELSVRSVI 77
Query: 62 RLTKFTCNVI-QNRMIVIVMDLDVIIDKC---DPIGKPVPAQRPSSNEQPGSVTGNPQSN 117
+L K+ CN I N+ ++I++++++I + D IG PVP +P+ P G N
Sbjct: 78 QLNKYICNTIADNKRVIIILEVNLIAGQNQVQDKIGNPVPIGQPAP---PAQQNGQAPHN 134
Query: 118 ATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNP 177
A + G G +
Sbjct: 135 A----------------------------------------QTGRGG---------LMSS 145
Query: 178 RPEFSRPY-ASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKA 236
RP + PY A+N P+ P S M S++ PIA+L PY +WTI+A
Sbjct: 146 RPTTTMPYNAAN--EMPKMPTTPSGGM-------------SKVFPIASLTPYQNRWTIRA 190
Query: 237 RVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG 296
RVT KG +RH+NN RG+G +F DL+D D EIR T FN +++ V+ G++YL+SRG
Sbjct: 191 RVTNKGNIRHWNNSRGEGCLFSMDLID-DSAEIRATAFNDQCKKYFDMVQVGQVYLISRG 249
Query: 297 SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDAS-IPRQQFHFRPINDVEGMENNSVVD 355
+LK A K + + ND E+ ++V+LC + +AS +P QF F+ I +E + +++VD
Sbjct: 250 TLKTANKQYTSIKNDYEMSFTSETVVELCNDAEASDVPTVQFDFKQIGQLEDIPKDTMVD 309
Query: 356 LIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDS 414
+IGV S ++++ R E KR LHL D S + V LTLWG D R + +
Sbjct: 310 VIGVCKSFSDVSTIVTRSTNRELSKRELHLVDDSEKVVTLTLWGT----DLTRF-WIVRT 364
Query: 415 GVFPILAVKAGRVSDFNGKVVGTISTTQ---LFIEPDFPEAHRLKEWFEKEGKNTQSVSI 471
F D +VV I T+ +++ P H + W++ EG SI
Sbjct: 365 RTFSNCPASWATFHDV--QVVCVIYRTREGFVYLRP----THTI-HWYDGEGNCKTITSI 417
Query: 472 SRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRP 531
S G K ++K +GLG+ EK ACP
Sbjct: 418 SEQRTGGGGGTNWKNFIEVKKQGLGSGEK---------------------ACP----SAE 452
Query: 532 CNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM-GMSA 590
CNKKV+ N DG + C++C + + YR +L D WVT FQ+ A+ I+ G +A
Sbjct: 453 CNKKVVENSDGSYRCEKCAKEYPDFKYRMLLVINTVDFGDGQWVTCFQDQAQVILGGNTA 512
Query: 591 KDLYSLKYVDQNDE-KFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSS 649
+ + SLK D N+E +F V + A F Y ++++K+ET++DE R+K + V+A+ +Y
Sbjct: 513 EHIGSLK--DSNNESEFEAVFQEANFKSYNLRMRIKQETYNDETRLKCSCVEAKPLDYKE 570
Query: 650 ET-RFILDLMDKLKS 663
+ R I DL + S
Sbjct: 571 HSRRLIQDLKTMISS 585
>gi|453084498|gb|EMF12542.1| replication factor A 1, rfa1 [Mycosphaerella populorum SO2202]
Length = 624
Score = 295 bits (755), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 169/494 (34%), Positives = 275/494 (55%), Gaps = 31/494 (6%)
Query: 191 RTPQAPYMQSPSMYANRGLVGKSEVPSR------IIPIAALNPYMGKWTIKARVTAKGEL 244
+ PQAP Q P R L ++ S I PI A++PY KWTIKAR T KG++
Sbjct: 148 QKPQAPVKQEPQ----RSLPSRTNGASHNGPHGNITPIEAISPYTHKWTIKARCTHKGDI 203
Query: 245 RHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG-SLKPAQK 303
+ ++N+ G+GK+F + LD + GEIR T FN DQ++ ++ G +Y +S ++ A+K
Sbjct: 204 KTWHNKNGEGKLFSANFLD-ESGEIRATMFNDQVDQWHEVLQEGSVYYISSPCRVQLAKK 262
Query: 304 NFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYI 363
F++L ND E+ + ++V+ ED+ +P+ +++F I ++ +E +S +D+IGVVS +
Sbjct: 263 QFSNLPNDYELTFENQTLVEKA-EDNDGVPQVRYNFITIEALQTVEKDSTIDVIGVVSEV 321
Query: 364 SPTASLMRKNGTET-QKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAV 422
++ K ++ KR L L D +G +V LT+WG + D+ ++A
Sbjct: 322 GEVNEIVSKTTSKPYSKRDLTLVDDTGYNVRLTIWG--------KTAESFDAQPESVIAF 373
Query: 423 KAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKN------TQSVSISRDSL 476
K +V DF G+ + +S+ + + P+ EA +LK W+ G N ++S + +
Sbjct: 374 KGVKVGDFGGRSLSLLSSGSMNVNPEIDEAFKLKGWYSASGHNETFASHANTMSTAGATG 433
Query: 477 SVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKV 536
GR D KT+SQ++DE LG + DW + ATI+YIK DNF Y AC +PCNKKV
Sbjct: 434 GAGRNDT-KTISQVRDENLGMTDDTDWFSTKATIIYIKQDNFAYPACQTT-DPQPCNKKV 491
Query: 537 MNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSL 596
+ +G W C++CD+S YRYI+ + DHTG W++ F E ++I+GM A DL ++
Sbjct: 492 LEVEEGNWRCEKCDKSWPSPKYRYIISVNVSDHTGQIWLSCFDEVGQQILGMPANDLMAM 551
Query: 597 KYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILD 656
K + +D++ E +A Y+F+ K K +TF D+QRV+ V A +Y E + + D
Sbjct: 552 KE-EGDDKRVSEAFSDANCKSYIFRCKAKMDTFQDQQRVRYQVQYARTIDYVQEAKRLAD 610
Query: 657 LMDKLKSGDSTSFA 670
++ + T F
Sbjct: 611 IIKQYNIQSDTLFV 624
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 70/121 (57%), Gaps = 14/121 (11%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQ + +K + Q Q+R+R+V SD QGM++ Q N L+T G L+ G V
Sbjct: 25 PVLQCVQIKPMA-----QGAGGQERWRVVFSDTVNFIQGMISMQSNHLITEGTLKKGMVC 79
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIID--KCDPIGKPVP---AQRPSSNE----QPGSVTG 112
RL F N ++++ I+I++DLDV+ + + + +G PV Q+P + QPG++TG
Sbjct: 80 RLKSFQANFVKDKHILIIIDLDVLQEYGEQEKLGTPVAIEGGQKPEAQAEVKPQPGNITG 139
Query: 113 N 113
N
Sbjct: 140 N 140
>gi|145353961|ref|XP_001421265.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581502|gb|ABO99558.1| predicted protein, partial [Ostreococcus lucimarinus CCE9901]
Length = 649
Score = 295 bits (755), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 197/664 (29%), Positives = 339/664 (51%), Gaps = 54/664 (8%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++QV DLK + K + +RFR++ SDG + QG+ + N + G + +V+
Sbjct: 25 PIVQVFDLKEL--KTKPDADDAAKRFRVLASDGGFAAQGLFGAELNAMCERGEITKFTVL 82
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDP-IGKPVPAQRPSSNEQPGSVTGNPQSNATG 120
RL ++ N + R I+IVMD +V+ D+ D IG+P QPG+ T N +
Sbjct: 83 RLREYIVNDLNGRRILIVMDAEVM-DRYDAVIGQP-------RVWQPGTGT-NASTGMNA 133
Query: 121 VSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPE 180
+Q N PAA+ G GS A+ + P
Sbjct: 134 GGMQQQRNA--------YGGAPAAQV---------------EGYGSGGGNGANLATEPPR 170
Query: 181 FSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTA 240
S A Q Y + + G V ++E P I PI ALNPY +WTI+AR+T
Sbjct: 171 ASGGGYGGGAPAAQGQYRR------DGGAVARNEQPRSITPIHALNPYQNRWTIRARITT 224
Query: 241 KGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKP 300
ELR Y+N +G+GKV F +LD+DG EI+ CFN A + ++ G +Y +S+G++
Sbjct: 225 PLELRSYSNAKGEGKVLGFQVLDADGTEIKCVCFNDTAVRLAGELRQGLVYEISKGAIVT 284
Query: 301 AQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVV 360
+ ++ EI LD + C + + I + + F+ +++++ + +VD+IG+
Sbjct: 285 PRDPRYAIYQ-YEIKLDNHATFVPCPDAERDIKKMVYKFKKLSELDALNAGDMVDVIGIA 343
Query: 361 SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPIL 420
+ ++M+++G+ET KR++ +RD S S+E TLW + G +++ + SG P++
Sbjct: 344 YSVGDLTTIMKRDGSETSKRSVMIRDDSDTSIEFTLWDPHSVEIGGQIESLIASGEKPVI 403
Query: 421 AVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGK----NTQSVSISRDSL 476
AVK+ R+ +F GK +GT+S+T + I PD EA R++ WF++ G N+ S S
Sbjct: 404 AVKSSRLGEFQGKNMGTVSSTMVEINPDSSEATRMRVWFDQGGADKTFNSLSGSGGGGGK 463
Query: 477 SVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKC---DNFCYTACPIMIGDRPCN 533
G TV +I +E + E +++ I +IK NF Y ACP++ G+R C
Sbjct: 464 GSGELLSFSTVKEIGEELVAKNEGVAYLSCCGIIKHIKLGAEGNF-YPACPLLNGERTCQ 522
Query: 534 KKV-MNNGDGRWHCDR-CDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAK 591
KK+ ++ G W C+R + + D+RY+ DH+ WV+ F + ++I G+SA
Sbjct: 523 KKLRKDDSTGEWKCERHAGEKIEAADWRYMFSMVCMDHSDEYWVSVFGDKGDKIFGISAA 582
Query: 592 DLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSET 651
++ + D+ E++ ++ +A F Y ++KV + ++D R K ++V+ ER NY +
Sbjct: 583 EMKEI--YDREPERYENMISDALFNDYSLRVKVAVDNYTDVPRAKGSLVEIERVNYVDMS 640
Query: 652 RFIL 655
+ ++
Sbjct: 641 KKLI 644
>gi|350411045|ref|XP_003489220.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Bombus impatiens]
Length = 595
Score = 295 bits (755), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 174/462 (37%), Positives = 253/462 (54%), Gaps = 41/462 (8%)
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
IPI AL+PY +W IKARV K +R ++N RG+GK+F DL+D + GEIR T F D
Sbjct: 161 IPIVALSPYQNRWVIKARVVNKSAIRTWSNSRGEGKLFSMDLVD-ESGEIRCTAFRDQCD 219
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
+FY +E GK+Y +SR SLK A K FN+L ND E+ L S + C++ IP QF F
Sbjct: 220 KFYDMIEIGKVYYISRASLKTANKQFNNLKNDYEMTLTGDSEIIPCHDIGDKIPTLQFDF 279
Query: 340 RPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWG 398
PIND+E E N ++D++ +V L+ R G + +KR ++L D S V LTLWG
Sbjct: 280 IPINDIEQKEKNDIIDVLAIVKSRGDLQMLVSRTTGKDMKKRDVNLIDESNTMVTLTLWG 339
Query: 399 N----FCNDDGLRLQHMCDSGVFPILAVKAGRVSDFN-GKVVGTISTTQLFIEPDFPEAH 453
F +D P+LA+K RV +FN GK + T+S T + I+PD PEAH
Sbjct: 340 TQAEEFSGNDN------------PVLAIKGARVGEFNGGKNLSTLSGTAVQIDPDIPEAH 387
Query: 454 RLKEWFEKEGKNTQSVSISR-----DSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSA 508
RL+ WF G + ++ +SR +S I + SQI K P+ TV A
Sbjct: 388 RLRGWFNTTGCHEEAKPLSRAFGSAAQMSQALITIGEANSQID-----KKNGPEIFTVKA 442
Query: 509 TIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQD 568
TI ++ +N Y +CP C KKV++ +G + C++C++ YR + + D
Sbjct: 443 TINLLRTENILYKSCP----SENCKKKVIDQANGMYRCEKCNKEFPNFKYRLLGSLSLAD 498
Query: 569 HTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQND---EKFGEVVRNATFTKYLFKLKVK 625
T WVTAF + E+I+G++A++L LK D ND EK GEV TF ++FK++ K
Sbjct: 499 WTDNMWVTAFNDETEKILGITAQELGELKEND-NDAYLEKLGEV----TFKSFIFKIRTK 553
Query: 626 EETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSGDST 667
ETF DE R++ST + + + ++ + +L DST
Sbjct: 554 METFGDENRLRSTCIDVSPTDCKAYNEDLITKLKELTGIDST 595
Score = 46.2 bits (108), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 14/105 (13%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQ-GMLATQRNELVTSGLLQIGSV 60
P+LQ++ K + S + +R+R+++SDG R MLATQ N ++T +L S+
Sbjct: 21 PILQILGHKKLSS------SNSGERYRLLVSDGKRINSFTMLATQLNSMITDNVLTEFSI 74
Query: 61 VRLTKFTCNVIQNR------MIVIVMDLDVIIDKC-DPIGKPVPA 98
++ ++ +V+ N M+++ +DL V D+ IG P A
Sbjct: 75 CQINRYAISVVNNAGKQKRVMVILSVDLKVAGDEVGRKIGNPTNA 119
>gi|449299904|gb|EMC95917.1| hypothetical protein BAUCODRAFT_71964 [Baudoinia compniacensis UAMH
10762]
Length = 613
Score = 295 bits (754), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 164/458 (35%), Positives = 268/458 (58%), Gaps = 23/458 (5%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI AL+PY +WTIKAR T KGE++ ++N+ G+GK+F + LD D GEIR T FN
Sbjct: 170 IHPIEALSPYAHRWTIKARCTHKGEIKTWHNKNGEGKLFSVNFLD-DSGEIRATGFNDAV 228
Query: 279 DQFYHQVEAGKIYLVSRG-SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
DQ+Y ++ G +Y VS + A+K F++L+ND E+ + + ++ E D +P+ ++
Sbjct: 229 DQWYEVLQEGSVYYVSSPCKVGLAKKQFSNLNNDYELTFERDTQIEKAEEQDG-VPQVRY 287
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVELTL 396
+F + D++ ++ +S +D IG++ + + ++ K ++ KR L L D + +V LT+
Sbjct: 288 NFTSLADLQSVDKDSTIDCIGILKEVGEVSEIVGKTSSKPYSKRELTLVDNTNYNVRLTV 347
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
WG + D+ ++A K +VSDF G+ + +S+ + I+PD EA++LK
Sbjct: 348 WG--------KTAENFDAQPESVVAFKGLKVSDFGGRSLSLLSSGSMNIDPDIDEAYKLK 399
Query: 457 EWFEKEGKNTQSVSISRD-SLSVGRA----DIRKTVSQIKDEGLGTKEKPDWITVSATIV 511
W++ G+N + S + S +V A + KT++Q++DE LG E DW +V ATI+
Sbjct: 400 GWYDASGRNEEFASHANTMSTAVATAGGDRNAYKTIAQVRDENLGMGEDTDWFSVKATII 459
Query: 512 YIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTG 571
Y+K DNF Y AC I D CNKKV+ + G+W C++CD S D+RYI+ + DHTG
Sbjct: 460 YVKQDNFAYPAC---ISD-GCNKKVIEHEPGQWRCEKCDTSHPRADWRYIMSVNVSDHTG 515
Query: 572 LTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSD 631
W++ F E + IMGM +L++L+ ++K E + A ++FK K K +TF D
Sbjct: 516 QMWLSCFNEVGQLIMGMDGNELHALQEA-MEEKKLAEAFQEANCKTFVFKCKAKMDTFQD 574
Query: 632 EQRVKSTVVKAERYNYSSETRFILDLMDKLKSGDSTSF 669
+QRV+ V A N+ E++ + DL+ K+ S + T F
Sbjct: 575 QQRVRYQVQYANPLNFQIESKKLADLI-KVYSANETLF 611
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 14/120 (11%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++Q + +K + S Q Q+R+R+V +D + QGMLA Q N + LQ GS+
Sbjct: 25 PIMQCVQIKPMASTQ------GQERYRVVWNDTTNFIQGMLAQQINHVAQENKLQKGSIC 78
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDP--IGKPVPAQRPSSN------EQPGSVTGN 113
RLT + N ++++ I+I++DLD++ + P +G PV + P QPG+++GN
Sbjct: 79 RLTSYQANYVKDKHILIILDLDILDEYGQPEKLGTPVALEAPKPEVMDDVKPQPGNISGN 138
>gi|353239748|emb|CCA71646.1| probable Replication factor-A protein 1 [Piriformospora indica DSM
11827]
Length = 611
Score = 295 bits (754), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 166/470 (35%), Positives = 267/470 (56%), Gaps = 26/470 (5%)
Query: 196 PYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGK 255
P P+ A+RG G + + I PI LNPY KWTIKARVT K E + ++N +G+G+
Sbjct: 146 PSKPVPAPAASRGPSGNN---APIFPIEGLNPYHNKWTIKARVTMKSERKRWSNNKGEGQ 202
Query: 256 VFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIF 315
+F +L+D + GEI+ T FNA D Y + E GK+Y +S+G + A+K F++L D EI
Sbjct: 203 LFSVNLMD-ETGEIKATAFNAAVDALYDRFEEGKVYYISKGRVVIAKKAFSNLTCDYEIT 261
Query: 316 LDMTSMVQLCYEDDA-SIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNG 374
+D + V+ C + +A +P+ Q+ F + D+E ++ VD+I VV + S+ K G
Sbjct: 262 MDSKTEVEECMDAEADKVPQIQYSFVSLKDLEEKPKDASVDVIAVVHSVGELGSINTKQG 321
Query: 375 TETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKV 434
KR L L D SG S TLWG + PI+A K +VSDFNG+
Sbjct: 322 KPLSKRDLVLADRSGYSCRCTLWG--------KQAEQWSHNDNPIVAFKGLKVSDFNGRS 373
Query: 435 VGTISTTQLFIEPDFPEAHRLKEWFEKEGK----NTQSVSISRDSLSVG--RADIRKTVS 488
+ S++ + I+ D PE + L+ W++KEG NT + + + + KT+
Sbjct: 374 LSLNSSSTMHIDVDMPETNSLRGWYQKEGHKGNFNTHGGGGAGAARGSSGFKREEMKTLL 433
Query: 489 QIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDR 548
++++ +G+++KP++ A+IV IK +N Y AC CNKKV + G+G WHC++
Sbjct: 434 EVRESEMGSRDKPEFFNSRASIVTIKQENIAYPACMA----EGCNKKVNDTGNG-WHCEK 488
Query: 549 CDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGE 608
CD++ + YRY+L Q+ DHT W+ AF + A EI+GM+A L +K D ++ +F +
Sbjct: 489 CDKTWPKPQYRYLLGIQVADHTAQAWLQAFNDVATEIIGMNADQLMEIK--DNDEAEFQK 546
Query: 609 VVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLM 658
V+ A Y F+ + K +T++D+ RV+ V+KA ++++ETR + L+
Sbjct: 547 VIHKAQSKTYNFECRAKNDTYNDQTRVRYGVIKAYPLDFTAETRNLHKLL 596
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 71/155 (45%), Gaps = 18/155 (11%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P+LQ++ +K +V+ +H R+++SDG + Q M AT NE V G + VV
Sbjct: 25 PLLQLLSIKKIVNAGNVPDRH-----RVIISDGEQFMQAMFATTLNEKVEDGTFRRNCVV 79
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVT--GNPQSNAT 119
+LTK+ I+ + I+I+ ++ I + IG PV PG T GN S A
Sbjct: 80 KLTKWEPQDIKGQRILILFSMEAISYPEEKIGTPV---------NPGKATAPGNSDSMAV 130
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARH--VGSNLP 152
S + + +P PAA G+N P
Sbjct: 131 DKSSNAPSTSSSDLVPSKPVPAPAASRGPSGNNAP 165
>gi|326435434|gb|EGD81004.1| hypothetical protein PTSG_10947 [Salpingoeca sp. ATCC 50818]
Length = 601
Score = 295 bits (754), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 165/443 (37%), Positives = 251/443 (56%), Gaps = 24/443 (5%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PI +L+PY+ +WTI+ARV +K +R +NNQRG G++F DL+D D GEIR T FN V D
Sbjct: 168 PIMSLHPYLHRWTIRARVASKSNVRTWNNQRGSGRLFSVDLID-DSGEIRATGFNDVCDS 226
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
+ E GK Y++ G +KPA K FN L+N+ E+ + + V L D IP+Q+F F+
Sbjct: 227 LHPVFEVGKCYVIQGGKIKPANKRFNQLNNEYEMQFESDTRVTLDMSADNVIPQQKFDFK 286
Query: 341 PINDVEGM----ENNSVVDLIGVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVELT 395
++E E+N D++ V I+ +++ K G E KR + L D G S+ T
Sbjct: 287 SFRELENTPVSRESNVFADVLAVCHSINDADTIITKATGRELTKRDITLLDRDGLSMTCT 346
Query: 396 LWGNFCNDDGLRLQHMCDSGVF-PILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
LWG D + GV +LA+KA RVSD+NG+ + ++ ++I PD EAH
Sbjct: 347 LWGQDAED------FEKNGGVVGAVLAIKAARVSDYNGRSLSVSQSSTMYINPDNDEAHS 400
Query: 455 LKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKE-KPDWITVSATIVYI 513
LK W++ EG ++ ++ + G R +SQIKD+ +G + KP++ AT+ YI
Sbjct: 401 LKGWYDMEGATVEAKPLT--VRNAGGNTTRILLSQIKDDQIGMIDGKPEYFMAVATVTYI 458
Query: 514 KCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLT 573
K DN Y ACP CNKKV+ NG + C++C++S +R + I D TG T
Sbjct: 459 KKDNCMYRACP----SDSCNKKVIENGPEEYRCEKCNKSYPNFKWRLMTSMSIADATGQT 514
Query: 574 WVTAFQECAEEIMGMSAKDLYSLKYVDQNDE-KFGEVVRNATFTKYLFKLKVKEETFSDE 632
WVTAFQE AE+++ ++++L L +NDE F + + +A F + FK + K +T+ D+
Sbjct: 515 WVTAFQESAEKLLDSTSQELGHLM---ENDEAAFSKKIADAQFRTWRFKCRAKADTYQDD 571
Query: 633 QRVKSTVVKAERYNYSSETRFIL 655
RV+ +VV A NY E ++
Sbjct: 572 TRVRVSVVDASPVNYVDEAAHLI 594
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGS-RSQQGMLATQRNELVTSGLLQIGSV 60
PV+Q++ +K + + Q+ RFR+ +SDG+ + MLATQ N ++ + +
Sbjct: 21 PVVQILTIKKISPGDSKGQK--ADRFRLTISDGTNKHNSAMLATQLNPMIVNEEVVKNGA 78
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVII-DKCDPIGKPV 96
+RL KF N +Q+R I+IV+ +V+ D IG PV
Sbjct: 79 IRLKKFMANTVQDRTIIIVLQAEVVAKDLGSVIGDPV 115
>gi|260950665|ref|XP_002619629.1| hypothetical protein CLUG_00788 [Clavispora lusitaniae ATCC 42720]
gi|238847201|gb|EEQ36665.1| hypothetical protein CLUG_00788 [Clavispora lusitaniae ATCC 42720]
Length = 607
Score = 294 bits (753), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 153/453 (33%), Positives = 264/453 (58%), Gaps = 21/453 (4%)
Query: 212 KSEVPSRII-PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIR 270
+S P R + PI +L+PY WTIK RV+ K ++R ++N +G+GK+F+ + LD + EIR
Sbjct: 158 RSAAPERPVNPIESLSPYQNNWTIKGRVSYKSDVRTWSNAKGEGKLFNVNFLD-ESDEIR 216
Query: 271 VTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDA 330
T FN +AD+FY+ ++ GK+Y V++ ++ A+ F+HL + E+ LD + + C+ D +
Sbjct: 217 ATAFNDMADKFYNLLQEGKVYYVTKARIQQAKPKFSHLSHPYELSLDKDTEITECF-DTS 275
Query: 331 SIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSG 389
+P+ +F +N ++ E ++++D+IGV+ ++ + K+ G +R + + D S
Sbjct: 276 DVPKINMNFTKLNQIQSAEKDTIIDVIGVIQNVNDVFQITAKSTGKPFDRRNITIVDDSN 335
Query: 390 RSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDF 449
+++L LW D + V ++AVK +V DF G+ + + L PD
Sbjct: 336 FAIDLGLWNATAVDFNI--------PVGSVIAVKGAKVQDFGGRSLSLTPSGSLLSNPDI 387
Query: 450 PEAHRLKEWFEKEG--KNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVS 507
PEA++LK W++ +G +N QS+ S + D RKT++ + LGTKEKPD+ ++
Sbjct: 388 PEAYQLKGWYDSKGSSENFQSLKTETGSSTDSLKD-RKTIALAEQLDLGTKEKPDYFSIK 446
Query: 508 ATIVYIKCDNFCYTACPIMI-----GDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYIL 562
ATI Y K DNFCY AC + G PCN+KV+ DG W C+RC+ + E YRYIL
Sbjct: 447 ATINYFKTDNFCYPACNNEVNTNGRGPSPCNRKVIQESDGSWRCERCNLTFAEPHYRYIL 506
Query: 563 QFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQ-NDEKFGEVVRNATFTKYLFK 621
I DHTG W T F E +++ +A +L +LK +++ + +F E+V + T ++ F+
Sbjct: 507 NCSIMDHTGQIWATFFDEEGKKLFNKTAGELMALKEMEEGENHEFMELVSSVTMKEFNFR 566
Query: 622 LKVKEETFSDEQRVKSTVVKAERYNYSSETRFI 654
L+ ++E+F+ RV+ VV ++++E++ +
Sbjct: 567 LRARQESFNGNMRVRYNVVSIADVDFNAESQHL 599
Score = 39.3 bits (90), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 7/115 (6%)
Query: 7 MDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKF 66
+ +++ SK + ++R+R VLSDG S QG++ ++ N + + S++ + ++
Sbjct: 29 LRVQVTNSKVINESSATERRYRCVLSDGRYSVQGLIDSRCNAYLEANGFTRYSIITINQY 88
Query: 67 TCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGV 121
T R I+++ DL V + K + I V + ++ P + ATGV
Sbjct: 89 TIAKTMKR-ILLIADLTVDVPKAERIASDVTSLDQYFDQNPA------EDIATGV 136
>gi|323306166|gb|EGA59898.1| Rfa1p [Saccharomyces cerevisiae FostersB]
Length = 455
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 155/451 (34%), Positives = 262/451 (58%), Gaps = 26/451 (5%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I I L+PY WTIKARV+ KGE++ ++NQRGDGK+F+ + LD+ GEIR T FN A
Sbjct: 18 IFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDT-SGEIRATAFNDFA 76
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
+F ++ GK+Y VS+ L+PA+ F +L + E+ LD ++++ C+ D++++P+ F+
Sbjct: 77 TKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECF-DESNVPKTHFN 135
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
F ++ ++ E NS VD++G++ I+P L + G + +R + + D SG S+ + LW
Sbjct: 136 FIKLDAIQNQEVNSNVDVLGIIQTINPHFELTSRAGKKFDRRDITIVDDSGFSISVGLWN 195
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEW 458
D L G + A+K RV+DF GK + ++ L P+ PEA+ LK W
Sbjct: 196 QQALDFNL------PEG--SVAAIKGVRVTDFGGKSLSMGFSSTLIPNPEIPEAYALKGW 247
Query: 459 FEKEGKNTQSVSISRD---------SLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSAT 509
++ +G+N +++ ++ SL+ A R T+++ + E LG EK D+ +V A
Sbjct: 248 YDSKGRNANFITLKQEPGMGGQSAASLTKFIAQ-RITIARAQAENLGRSEKGDFFSVKAA 306
Query: 510 IVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDH 569
I ++K DNF Y AC + CNKKV+ DG W C++CD + ++RYIL I D
Sbjct: 307 ISFLKVDNFAYPAC----SNENCNKKVLEQPDGTWRCEKCDTNNARPNWRYILTISIIDE 362
Query: 570 TGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETF 629
T W+T F + A++++G+ A L SLK D N+ F ++ ++ +Y F+++ +E+T+
Sbjct: 363 TNQLWLTLFDDQAKQLLGVDANTLMSLKEEDPNE--FTKITQSIQMNEYDFRIRAREDTY 420
Query: 630 SDEQRVKSTVVKAERYNYSSETRFILDLMDK 660
+D+ R++ TV NY +E ++ D + K
Sbjct: 421 NDQSRIRYTVANLHSLNYRAEADYLADELSK 451
>gi|358389545|gb|EHK27137.1| hypothetical protein TRIVIDRAFT_85768 [Trichoderma virens Gv29-8]
Length = 600
Score = 294 bits (752), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 162/453 (35%), Positives = 266/453 (58%), Gaps = 28/453 (6%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
+ I PI AL+P+ KWTIKARVT K +++ ++ G+GK+F +LLD + GEI+ T FN
Sbjct: 165 ANIYPIEALSPFSSKWTIKARVTFKSDIKTWHKPTGEGKLFSVNLLD-ESGEIKATGFND 223
Query: 277 VADQFYHQVEAGKIYLVS---RGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIP 333
D FY ++ G +Y +S R SL A+K F++L ND E+ + ++++ ED ++P
Sbjct: 224 QCDAFYDLLQEGSVYYISSPCRVSL--AKKQFSNLPNDYELAFERETVIEKA-EDQTNVP 280
Query: 334 RQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSV 392
+ +F+F I +++ +E +S VD+IGV+ ++ + + +K+G QKR L L D +G SV
Sbjct: 281 QLRFNFCTIQELQSVEKDSTVDVIGVLKEVAEVSEITSKKDGRPFQKRELTLVDDTGYSV 340
Query: 393 ELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEA 452
+T+WG + D+ ++A K +VSDF GK + +S+ + ++PD P+A
Sbjct: 341 RVTIWG--------KTASAFDANPESVVAFKGTKVSDFGGKSLSLLSSGTMTVDPDIPDA 392
Query: 453 HRLKEWFEKEGKNTQSVSISRDSLSV----GRADIRKTVSQIKDEGLGTKEKPDWITVSA 508
+RLK W++ G+ T + + ++ V GR + KT+SQ+KDE LG ++ + T+ A
Sbjct: 393 YRLKGWYDSAGR-TNTFATHQNLAGVAGATGRKEEIKTISQVKDENLGVDDQA-YYTIKA 450
Query: 509 TIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQD 568
TIV++K DNFCY AC ++ CNKKV DG W C++C+ S + DYRYI+Q + D
Sbjct: 451 TIVFVKQDNFCYPAC----SNQGCNKKVTAMPDGTWQCEKCNVSHDKPDYRYIMQLNVAD 506
Query: 569 HTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEET 628
HT W++ F + ++GMSA +L LK + +D KF K +F+ + K +
Sbjct: 507 HTSHQWLSCFDDTGRIVVGMSANELMELK--ENDDAKFMAAFEAVNCKKLVFRCRAKMDN 564
Query: 629 FSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
F D QRV+ V A +Y +E +++L+ +
Sbjct: 565 FGDTQRVRYQVFSATLVDYKTEGNKLVELIKQF 597
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 17/156 (10%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
+PV+Q + +K Q R+R+V+SDG Q MLATQ N ++ L+ GS+
Sbjct: 28 VPVMQCLQIK-----QMAPSGQGGDRYRLVMSDGVNYVQTMLATQANHVIHDNKLERGSL 82
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVI--IDKCDPIGKPVPAQ-RPSSNEQPGSVTGNPQSN 117
R+ ++T N ++ + I++++DL+VI + IG PV RP+ ++ GN
Sbjct: 83 TRVKQYTPNNLKGKNILVILDLEVIESFGAQEKIGDPVVLDPRPAET----TIAGNDFYG 138
Query: 118 ATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPP 153
+ + ++ QLP + +A H G+N+ P
Sbjct: 139 SKKEEMD--TKPQMQQLPSNP---ISATHAGANIYP 169
>gi|255715099|ref|XP_002553831.1| KLTH0E08118p [Lachancea thermotolerans]
gi|238935213|emb|CAR23394.1| KLTH0E08118p [Lachancea thermotolerans CBS 6340]
Length = 624
Score = 294 bits (752), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 147/448 (32%), Positives = 258/448 (57%), Gaps = 21/448 (4%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I I L+PY WTIKARV+ KG+++ ++NQRG+GK+F+ +LLD + GEIR T F+
Sbjct: 190 IFAIEQLSPYQNMWTIKARVSFKGDIKTWSNQRGEGKLFNVNLLD-NSGEIRATTFSENV 248
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D+FY+ ++ GK+Y VS+ ++P++ F++L + E+ LD ++V+ C+ DD +P+ F
Sbjct: 249 DKFYNLLQEGKVYYVSKARIQPSKPQFSNLAHPYELQLDRDTVVEECF-DDVDVPKMNFS 307
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
F +N +E E NS+VD+IG++ ++P + K G +R + L D SG SV + LWG
Sbjct: 308 FVKLNTMESQEANSIVDVIGIIRTVNPPFEITSKAGKRFDRRDIILVDDSGYSVNVGLWG 367
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEW 458
L+ G ++A+K GRV+DFNGK + + + P+ PEA+ +K W
Sbjct: 368 QQA------LEFNLPEG--SVVAIKGGRVTDFNGKGLSMGFNSTMHPSPEVPEAYAIKGW 419
Query: 459 FEKEGKNTQSVSISRDSLSVGRADIR-----KTVSQIKDEGLGTKEKPDWITVSATIVYI 513
++ G+N Q S+ ++ + G R ++++ + + LG E+ D+ ++ A + Y+
Sbjct: 420 YDSVGRNAQFHSLKQEPGAGGGNAARFIANRISIAKAQADNLGMSERGDYFSIKAAVSYL 479
Query: 514 KCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLT 573
+ DN Y AC + CNKKV+ DG W C++CD + E +RY+L + D TG
Sbjct: 480 RVDNLAYPAC----ANENCNKKVIEEPDGTWRCEKCDANHPEPQFRYMLTVSVLDETGQI 535
Query: 574 WVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQ 633
W+T F E AE+++G+ A + +KY + + KF + + +Y F+++ + + ++DE
Sbjct: 536 WLTLFNEQAEQLLGVDANSM--VKYKESDPSKFARITQKIQMNQYDFRVRARADNYNDET 593
Query: 634 RVKSTVVKAERYNYSSETRFILDLMDKL 661
R++ T + +E F+ + + K+
Sbjct: 594 RIRYTAANVHNLRFGAEAEFLAEELGKV 621
>gi|157133641|ref|XP_001662954.1| replication factor a 1, rfa1 [Aedes aegypti]
gi|108870757|gb|EAT34982.1| AAEL012826-PA [Aedes aegypti]
Length = 619
Score = 294 bits (752), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 199/663 (30%), Positives = 325/663 (49%), Gaps = 88/663 (13%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQ-GMLATQRNELVTSGLLQIGSV 60
PV+Q++ K + +Q + R+R+++SDG MLATQ NEL +G L +V
Sbjct: 24 PVVQILGSKRIAGGGEQSE-----RYRLLISDGQNLYSFAMLATQLNELHHNGQLAEFTV 78
Query: 61 VRLTKFTCNVIQ-----NRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQ 115
+R+ ++ +V+ + ++I++DL V+ KP A G GNPQ
Sbjct: 79 IRIDRYITSVVNRNEKGEKRVLIILDLHVV--------KPGAA--------VGEKIGNPQ 122
Query: 116 SNATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFS 175
+ + S +P T++ +GS SN SA
Sbjct: 123 TLTETGAGSGGGAASTSAVPARTES-----------------------AGSVSNGSA--- 156
Query: 176 NPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIK 235
Y P M S A G G S + PI +L+PY KW I+
Sbjct: 157 -------------YQNRPMGGGMSS----APSGGDGLSLENTLTHPINSLSPYQNKWVIR 199
Query: 236 ARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSR 295
ARV +K +R ++N +G+GK+F D++D + GEIRVT F D++Y +E K+Y +++
Sbjct: 200 ARVMSKSGIRTWSNAKGEGKLFSMDVMD-ESGEIRVTAFKDQCDKYYDMIEVDKVYYITK 258
Query: 296 GSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVD 355
LKPA K ++ L ND E+ + ++VQ C + +S+P Q++F PI+ + ME N+++D
Sbjct: 259 CQLKPANKQYSTLKNDYEMTMTNDTIVQECKDAGSSMPSIQYNFVPISQIGNMEPNAMID 318
Query: 356 LIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDS 414
+IGV R +G E +KR + L D S +V LTLWG DD +
Sbjct: 319 VIGVCKEAGEVMQFTARSSGRELKKREVTLVDSSNAAVSLTLWG----DDAQNFNATNN- 373
Query: 415 GVFPILAVKAGRVSDF-NGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSIS- 472
P+L +K RV++F GK +G ++++ L PD EAH+++ W+ G + S+S
Sbjct: 374 ---PVLVIKGARVTEFGGGKSLGLVASSVLKTNPDNEEAHKIRGWYLGGGCDNVVNSVST 430
Query: 473 RDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPC 532
R G + T + K++ LG +KPD+ V A I IK N Y ACP C
Sbjct: 431 RTGAGAGYSTEWITFHEAKEKNLGAGDKPDYFQVKALIHNIKSANAVYKACP----QAEC 486
Query: 533 NKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKD 592
NKKV++ +G++ C++C+ YR ++ + D T WVT F + AE+++G S++D
Sbjct: 487 NKKVIDQDNGQYRCEKCNADFPNFKYRLLVNMLVGDWTSNRWVTVFTDLAEQMLGKSSQD 546
Query: 593 LYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETR 652
+ ++ N ++ ++ F Y+FKL+ K E + D R K+T V A N+
Sbjct: 547 IGDA--LEFNKDEAEQIFSAINFKSYVFKLRTKVEFYGDSSRNKTTAVAANPVNHKEYNA 604
Query: 653 FIL 655
+++
Sbjct: 605 YLI 607
>gi|307192559|gb|EFN75747.1| Replication protein A 70 kDa DNA-binding subunit [Harpegnathos
saltator]
Length = 597
Score = 293 bits (751), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 179/496 (36%), Positives = 267/496 (53%), Gaps = 34/496 (6%)
Query: 175 SNPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTI 234
S PE S+P S A + Q+ S +S PIAAL+PY KW I
Sbjct: 119 SRSEPETSKPNIS------AAAHQQNGSATKKNNSSNQSSSDISTTPIAALSPYQNKWVI 172
Query: 235 KARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVS 294
K RV K ++R ++N RGDGK+F+ +L+D + GEIR T FN D+FY +EAG +Y +S
Sbjct: 173 KVRVLTKSQIRTWSNSRGDGKLFNMELVD-ESGEIRCTAFNNACDKFYDMIEAGNVYYIS 231
Query: 295 RGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVV 354
R LKPA K FN + ND E+ + + V C+++ IP QF+F PI+ +E M+ + ++
Sbjct: 232 RCQLKPANKQFNTMKNDFEMSMTNDTEVVPCHDNSEDIPTLQFNFSPISQLENMKKDDMI 291
Query: 355 DLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCD 413
D++GVV+ +++ +K G E KR +++ D S +V +TLWG D D
Sbjct: 292 DVLGVVTTFGELQNIVSQKTGKEHVKRDINIVDDSSVTVCVTLWGKQAED--------FD 343
Query: 414 SGVFPILAVKAGRVSDFNGKVVGTISTTQLF-IEPDFPEAHRLKEWFEKEGKNTQSVSIS 472
+ PI+A+K+ RV +FNG +I + +PD PEAHRL+ W+ G S+S
Sbjct: 344 ASNNPIVAIKSARVGEFNGGKNLSIGGMAIIEKDPDLPEAHRLRGWYSAGGHLENVKSLS 403
Query: 473 RDSLSVGRADIRK---TVSQIKDEGLGTK-EKPDWITVSATIVYIKCDNFCYTACPIMIG 528
+ G D+ T + D LG K + D +V+ATI I+ +N Y ACP+
Sbjct: 404 KAG-GAGGGDMNAPLYTFQEATDAKLGEKMDAADVFSVTATINIIRVENSIYKACPL--- 459
Query: 529 DRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGM 588
C KK+++ G + C++C++ YR + I D TG W+TAF E AE+I+GM
Sbjct: 460 -ESCKKKLVDQSTGVFRCEKCNKDYPNFLYRLLASMNIADATGSRWITAFNEEAEKILGM 518
Query: 589 SAKDLYSLKYVDQND---EKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERY 645
SA++L LK D ND +KFG+ A+F ++ F ++VK E F DE R++ T
Sbjct: 519 SAQELGELKEND-NDAYMQKFGD----ASFKRFTFGVRVKSEVFQDEMRMRHTCTSVSPL 573
Query: 646 NYSSETRFILDLMDKL 661
NY +LD KL
Sbjct: 574 NYRIYLAHLLDKASKL 589
>gi|169600091|ref|XP_001793468.1| hypothetical protein SNOG_02875 [Phaeosphaeria nodorum SN15]
gi|160705373|gb|EAT89606.2| hypothetical protein SNOG_02875 [Phaeosphaeria nodorum SN15]
Length = 578
Score = 293 bits (751), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 195/655 (29%), Positives = 322/655 (49%), Gaps = 100/655 (15%)
Query: 25 QRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNRMIVIVMDLDV 84
QRFR+VLSD Q M+AT N++VTSG L+ GS+VRL K+ ++++ I+I+M+L+V
Sbjct: 12 QRFRVVLSDIRNFIQTMIATTANDIVTSGQLKKGSIVRLVKYNPQQVKDKNILIIMELEV 71
Query: 85 I--IDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVP 142
+ + D IG+P S QP A+
Sbjct: 72 LSQYGELDKIGQPEALDTKSDPPQPA-------------------------------AIS 100
Query: 143 AARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPS 202
GS PP P+P+ + P + T P++
Sbjct: 101 GNNFYGSKQPPA----------------------PQPQRNLPVHQSNPATSSHPHL---- 134
Query: 203 MYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL 262
PI +L+PY KWTI+AR T K +++ ++N +G GK+F +LL
Sbjct: 135 -----------------YPIESLSPYAHKWTIRARCTNKSDMKEWHNAKGTGKLFSVNLL 177
Query: 263 DSDGGEIRVTCFNAVADQFYHQVEAGKIYLVS---RGSLKPAQKNFNHLHNDLEIFLDMT 319
D D GEIR T F A++ + E G +Y +S R +L A+K F++L ND E+ +
Sbjct: 178 D-DTGEIRATAFTEAAEKLFPVFEVGTVYYISAPCRVTL--AKKQFSNLPNDYELQFEKD 234
Query: 320 SMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQ 378
+ V+ ED + P+ +F+F I D+ +E ++ +D +GV+ ++ ++ KN +
Sbjct: 235 TEVEKA-EDQDNKPQIRFNFTKIGDLNSVEKDTTIDTVGVLKEVAEVNTITSKNTNKDFS 293
Query: 379 KRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTI 438
KR L L D S SV LT+WG + D+ + I+A K +VSDF G+ + +
Sbjct: 294 KRELTLADDSQTSVRLTIWG--------KTAETFDAPLESIIAFKGVKVSDFGGRSLSLL 345
Query: 439 STTQLFIEPDFPEAHRLKEWFEKEGKN-TQSVSISRDSLSVGRA-DIRKTVSQIKDEGLG 496
S+ + ++PD EAH+L+ WF G+N T S + S G + + K +SQ +E
Sbjct: 346 SSGSMMVDPDIDEAHKLRGWFNAVGQNATFSTHQNMAGASGGSSKNENKLISQCIEEETY 405
Query: 497 TKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVEC 556
++ P ++++ A++VY+K Y AC CNKKV+ G W C++C QS E
Sbjct: 406 LQDTPSYMSLKASVVYVKNTTVAYPAC----STAGCNKKVIEENPGSWWCEKCQQSFPEP 461
Query: 557 DYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQ--NDEKFGEVVRNAT 614
+YRY+L + DHTG W++ F E + I+GMSA + +K D+ N + F ++ AT
Sbjct: 462 NYRYVLSVNVADHTGTLWLSCFDEAGQSIVGMSANEAMKIKVDDEENNTQNFMTAMQEAT 521
Query: 615 FTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSGDSTSF 669
+ F+++ K ET+ D+ + + V+ NY+ E + L+ + + + + F
Sbjct: 522 CKTFNFRVRAKMETYQDQPKPRYQVMNMYPLNYAQEANKLAQLIKQYDTNEDSLF 576
>gi|340714568|ref|XP_003395799.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Bombus terrestris]
Length = 595
Score = 293 bits (751), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 174/457 (38%), Positives = 254/457 (55%), Gaps = 44/457 (9%)
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
IPI AL+PY +W IKARV K +R ++N RG+GK+F DL+D + GEIR T F D
Sbjct: 161 IPIVALSPYQNRWVIKARVVNKSAIRTWSNSRGEGKLFSMDLVD-ESGEIRCTAFRDQCD 219
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
+FY +E GK+Y +SR +LK A K FN+L ND E+ L S + C++ IP QF F
Sbjct: 220 KFYDMIEIGKVYYISRATLKTANKQFNNLKNDYEMSLTGDSEIIPCHDIGDKIPTLQFDF 279
Query: 340 RPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWG 398
PIND+E E N ++D++ +V L+ R G + +KR ++L D S V LTLWG
Sbjct: 280 IPINDIEQKEKNDIIDILAIVKSRGDLQMLVSRTTGKDMKKRDINLIDESNTMVTLTLWG 339
Query: 399 N----FCNDDGLRLQHMCDSGVFPILAVKAGRVSDFN-GKVVGTISTTQLFIEPDFPEAH 453
F +D P+LA+K RV +FN GK + T+S T + I+PD PEAH
Sbjct: 340 TQAEEFSGNDN------------PVLAIKGARVGEFNGGKNLSTLSGTAVQIDPDIPEAH 387
Query: 454 RLKEWFEKEGKNTQSVSISR-----DSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSA 508
RL+ WF G + ++ +SR +S I + SQI D+ +G P+ TV A
Sbjct: 388 RLRGWFNTTGCHEEAKPLSRAFGSAAQMSQALITIGEANSQI-DKKIG----PEIFTVKA 442
Query: 509 TIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQD 568
TI ++ +N Y +CP C KKV++ +G + C++C++ YR + + D
Sbjct: 443 TINLLRTENILYKSCP----SENCKKKVIDQANGMYRCEKCNKEFPNFKYRLLGSLSLAD 498
Query: 569 HTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQND---EKFGEVVRNATFTKYLFKLKVK 625
T WVTAF + E+I+G++A++L LK D ND EK G+V TF ++FK++ K
Sbjct: 499 WTDNMWVTAFNDETEKILGITAQELGELKEND-NDAYLEKLGDV----TFKSFIFKIRTK 553
Query: 626 EETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLK 662
ETF DE R++ST + + + DL+ KLK
Sbjct: 554 METFGDENRLRSTCIDVSPTDCKAYNE---DLITKLK 587
Score = 46.2 bits (108), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQ-GMLATQRNELVTSGLLQIGSV 60
P+LQ++ K + S + +R+R+++SDG R MLATQ N ++T +L S+
Sbjct: 21 PILQILGHKKLSS------SNSGERYRLLVSDGKRINSFTMLATQLNSMITDNVLTEFSI 74
Query: 61 VRLTKFTCNVIQNR------MIVIVMDLDVIIDKC-DPIGKPVPAQRPSSNEQPGSV 110
++ ++ +V+ N M+++ +DL V D+ IG P A ++ SV
Sbjct: 75 CQINRYAISVVNNAGKQKRVMVILSVDLKVAGDEVGHKIGNPTNADADGESKPAQSV 131
>gi|401837707|gb|EJT41601.1| RFA1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 621
Score = 293 bits (750), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 157/468 (33%), Positives = 265/468 (56%), Gaps = 32/468 (6%)
Query: 204 YANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLD 263
+ N G + P I I L+PY WTIKARV+ KGE++ ++NQRGDGK+F+ + LD
Sbjct: 171 FVNEGSNSQKSRP--IFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLD 228
Query: 264 SDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQ 323
+ GEIR T FN A +F ++ GK+Y VS+ L+PA+ F +L + E+ LD ++V+
Sbjct: 229 T-SGEIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVVE 287
Query: 324 LCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLH 383
C+ D++++P+ F+F ++ ++ E NS VD++G++ I+P L + G + +R +
Sbjct: 288 ECF-DESNVPKTHFNFIKLDAIQNQEVNSNVDVLGIIQTINPQFELTSRAGKKFDRRDIT 346
Query: 384 LRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGV--FPILAVKAGRVSDFNGKVVGTISTT 441
+ D SG S+ + LW Q D + + A+K RV+DF GK + ++
Sbjct: 347 IVDDSGFSISVGLWN----------QQALDFNLPEGSVAAIKGVRVTDFGGKSLSMGFSS 396
Query: 442 QLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRD---------SLSVGRADIRKTVSQIKD 492
L P+ PEA+ LK W++ +G+N ++ ++ SL+ A R T+++ +
Sbjct: 397 TLIPNPEIPEAYALKGWYDSKGRNANFTTLKQEPGVGGQSAASLTKFIAQ-RITIARAQA 455
Query: 493 EGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQS 552
E LG EK D+ + A I ++K DNF Y AC + CNKKV+ DG W C++CD +
Sbjct: 456 ENLGRSEKGDFFSAKAAISFLKVDNFAYPAC----SNENCNKKVLEQPDGTWRCEKCDTN 511
Query: 553 VVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRN 612
++RYIL I D T W+T F + A++++G+ A L SLK D N+ F ++ ++
Sbjct: 512 NASPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLKEEDPNE--FTKITQS 569
Query: 613 ATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDK 660
+Y F+++ +E+T++D+ R++ TV NY +E ++ D + K
Sbjct: 570 IQMNEYDFRIRAREDTYNDQSRIRYTVANLHSLNYKAEADYLADELSK 617
>gi|261187451|ref|XP_002620149.1| replication factor rfa1 [Ajellomyces dermatitidis SLH14081]
gi|239594199|gb|EEQ76780.1| replication factor rfa1 [Ajellomyces dermatitidis SLH14081]
gi|239609246|gb|EEQ86233.1| replication factor rfa1 [Ajellomyces dermatitidis ER-3]
gi|327356481|gb|EGE85338.1| replication factor [Ajellomyces dermatitidis ATCC 18188]
Length = 603
Score = 293 bits (749), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 163/448 (36%), Positives = 267/448 (59%), Gaps = 23/448 (5%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
+ I PI AL+PY KWTIKAR T K ++ ++N+ G+GK+F +LLD D GEIR T F
Sbjct: 167 ANIYPIEALSPYSHKWTIKARCTNKSAIKTWHNKNGEGKLFSVNLLD-DSGEIRATAFKD 225
Query: 277 VADQFYHQVEAGKIYLVSR-GSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQ 335
D Y E G +Y +S ++ A+K FN+L+N+ E+ + ++V+ E+ +P+
Sbjct: 226 QCDSLYGVFEEGSVYYISSPCRVQIAKKAFNNLNNEYELTFEKDTVVEKA-EEQNDVPQI 284
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVEL 394
+F+F I +++ +E + +D+IGV+ + T+ ++ K ++ KR L L D +G SV L
Sbjct: 285 RFNFTNIANLQSVEAGTTIDVIGVLKDVGETSQILSKTTSKPYDKRDLTLVDNTGYSVRL 344
Query: 395 TLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
T+WGN + DS ++A K +VSD+NG+ + +S+ + ++PD +AH+
Sbjct: 345 TVWGNTAKE--------FDSVPESVVAFKGVKVSDYNGRSLSLLSSGSMTVDPDIEDAHK 396
Query: 455 LKEWFEKEGKNTQSVSISRDSLSVG---RADIRKTVSQIKDEGLGTKEKPDWITVSATIV 511
LK W++ +G++ S S + G RA KT+ Q+ + LG EKPD+ +V AT+V
Sbjct: 397 LKGWYDAQGRSETFASHDSMSNAAGFGDRASSFKTIVQVHEGNLGMSEKPDYFSVKATVV 456
Query: 512 YIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTG 571
YIK D+ Y AC + D+ CNKKV+ + +G+W C+RCDQS ++RYIL + DHTG
Sbjct: 457 YIKQDSMAYPAC---LTDK-CNKKVLQDDNGQWRCERCDQSFPHPEHRYILSVNVCDHTG 512
Query: 572 LTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEK-FGEVVRNATFTKYLFKLKVKEETFS 630
W++ F E + I+G SA +L LK +NDE+ + E+V+ A + FK + K + F
Sbjct: 513 AMWLSCFDEVGKLILGTSANELMELK---ENDERAYEELVQKANCRAWNFKCRAKMDNFQ 569
Query: 631 DEQRVKSTVVKAERYNYSSETRFILDLM 658
D+QRV+ V+ +YS+E+ + +++
Sbjct: 570 DQQRVRYQVLSVSAIDYSAESARLAEMI 597
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 65/118 (55%), Gaps = 11/118 (9%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P+LQ + +K + + Q + +RFR V SD + Q MLATQ N VTSG L G V
Sbjct: 27 PILQCLQVKPLPA-----QPNSPERFRAVFSDITNYIQTMLATQANHYVTSGQLVRGCFV 81
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVI--IDKCD-PIGKPVP---AQRPSSNEQPGSVTGN 113
RL F N+++ + I+I++DL+V+ + C+ IG+P P Q P +++ N
Sbjct: 82 RLKSFQANMVKGKRILIILDLEVLERLGICEKKIGEPQPLDAKQEEQDKALPTTISSN 139
>gi|406602762|emb|CCH45720.1| Replication protein A 70 kDa DNA-binding subunit [Wickerhamomyces
ciferrii]
Length = 608
Score = 293 bits (749), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 145/448 (32%), Positives = 263/448 (58%), Gaps = 19/448 (4%)
Query: 216 PSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFN 275
PS I I L+PY WTIKARV+ KGE+R ++NQRG+GK+F+ +LLD + EIR T FN
Sbjct: 176 PSNIYAIDQLSPYQNIWTIKARVSFKGEMRTWSNQRGEGKLFNVNLLD-ETDEIRATAFN 234
Query: 276 AVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQ 335
A++FY+ ++ GK Y VS+ ++P++ F++L + E+ LD ++++ C++ D +P+
Sbjct: 235 DNAEKFYNLLQEGKAYYVSKARIQPSRPQFSNLKHPYELQLDRDTVIEECFDAD-DVPKL 293
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F +N ++ +E +S++D++GV+ ++P + K G +R + + D S ++ +
Sbjct: 294 SFDFVKLNKIQDLEADSIIDVVGVIKEVNPHFQITSKAGRAYDRRDITVVDDSQFAISVG 353
Query: 396 LWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRL 455
LW N L D+ ++A+K +VSDFNGK + + + PD PEA+ +
Sbjct: 354 LW----NKTALEF----DTPEGTVIAIKGAKVSDFNGKTLSITPSGTITTNPDAPEAYAI 405
Query: 456 KEWFEKEGKNTQSVSISRDSLSVGRADI--RKTVSQIKDEGLGTKEKPDWITVSATIVYI 513
K W++ +G+N ++ + L + I RKT+ +++ LG EKPD+ T+ +++ ++
Sbjct: 406 KGWYDAQGRN-ENFQTLKTELGTRKTSIEERKTIGDVQNLELGLGEKPDYFTIKSSVNFL 464
Query: 514 KCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLT 573
K DNF Y AC CN+KV+ DG W C++CD + YRYIL + D TG
Sbjct: 465 KTDNFSYPAC----SSEGCNRKVIEQHDGTWRCEKCDINHAVPLYRYILTISVVDPTGQL 520
Query: 574 WVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQ 633
WVT F++ A+ ++G SA DL +KY ++++ F +V ++ F+++ +++ ++ +
Sbjct: 521 WVTLFEDQAKALLGYSANDL--VKYKEEDNSLFTSIVSKIQMNEFEFRIRARQDNYNGQV 578
Query: 634 RVKSTVVKAERYNYSSETRFILDLMDKL 661
R++ V + ++S+E +++ + L
Sbjct: 579 RIRYNAVNVNKIDFSNEAEYLVKKFESL 606
>gi|358395596|gb|EHK44983.1| hypothetical protein TRIATDRAFT_139326 [Trichoderma atroviride IMI
206040]
Length = 600
Score = 292 bits (748), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 165/453 (36%), Positives = 265/453 (58%), Gaps = 28/453 (6%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
+ I PI AL+P+ KWTIKARVT K +++ ++ G+GK+F +LLD + GEI+ T FN
Sbjct: 166 ANIYPIEALSPFSHKWTIKARVTFKSDIKTWHKPTGEGKLFSVNLLD-ESGEIKATGFND 224
Query: 277 VADQFYHQVEAGKIYLVS---RGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIP 333
D FY ++ G +Y +S R +L A+K F++L ND E+ + ++++ ED ++P
Sbjct: 225 QCDAFYDLLQEGSVYYISTPCRVAL--AKKQFSNLSNDYELTFERETVIEKA-EDQTNVP 281
Query: 334 RQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSV 392
+ +F+F I +++ +E +S VD+IGV+ ++ + + +K+G QKR L L D +G SV
Sbjct: 282 QLRFNFCSIQELQSVEKDSTVDVIGVLKEVAEVSEITSKKDGRPFQKRELTLVDDTGYSV 341
Query: 393 ELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEA 452
+T+WG N G D+ ++A K +VSDF GK + +S+ + + PD P+A
Sbjct: 342 RVTIWGKTAN--GF------DANPESVVAFKGTKVSDFGGKSLSLLSSGTMTVNPDIPDA 393
Query: 453 HRLKEWFEKEGKNTQSVSISRDSLSV----GRADIRKTVSQIKDEGLGTKEKPDWITVSA 508
+RLK W++ G+ T + + ++ V GR D KT+SQ+KDE LG ++ + T+ A
Sbjct: 394 YRLKGWYDSAGR-TDTFATHQNLAGVAGATGRKDDIKTISQVKDENLGVDDQA-YYTIKA 451
Query: 509 TIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQD 568
TIV++K D+FCY AC + CNKKV + DG WHC++C+ S DYRYIL + D
Sbjct: 452 TIVFVKQDSFCYPACST----QGCNKKVTSMPDGTWHCEKCNVSHDRPDYRYILNLNVAD 507
Query: 569 HTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEET 628
HT W++ F + I+GMSA +L LK + +D KF K F+ + K +
Sbjct: 508 HTSHQWLSCFDDTGRIIVGMSANELMELK--ENDDAKFMAAFEAVNCKKLTFRCRAKLDH 565
Query: 629 FSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
F D QRV+ V+ A +Y +E +++L+ +
Sbjct: 566 FGDTQRVRYQVLSAALMDYKTEGDKLVELIKQF 598
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
+PV+Q + +K Q R+R+V+SDG+ Q MLAT N ++ G L+ G +
Sbjct: 28 VPVMQCLQIK-----QMGPSGQGGDRWRLVMSDGNNYVQTMLATAANHIIHDGKLERGCI 82
Query: 61 VRLTKFTCNVIQNR 74
R+ K+ N+++ +
Sbjct: 83 ARVKKYQPNILKGK 96
>gi|116179976|ref|XP_001219837.1| hypothetical protein CHGG_00616 [Chaetomium globosum CBS 148.51]
gi|88184913|gb|EAQ92381.1| hypothetical protein CHGG_00616 [Chaetomium globosum CBS 148.51]
Length = 586
Score = 292 bits (748), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 194/638 (30%), Positives = 318/638 (49%), Gaps = 86/638 (13%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
+PV+Q + + + SK +R+R+VLSD Q MLATQ N ++ G LQ GS+
Sbjct: 27 VPVMQCLHITTLESKGPGTAA--PERYRIVLSDLRNYVQCMLATQANHVMHDGQLQRGSI 84
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATG 120
VR+ ++ ++ + ++I++DL+V+ + +G P P S E VT + N T
Sbjct: 85 VRVKQYQAQYLKGKHVMIILDLEVMTE----LGTPDKIGDPKSME----VTTGERQNTTS 136
Query: 121 VSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPE 180
S + GA S + + F +P+
Sbjct: 137 DSASFY----------------------------------GAQSEPAAQTTPQF---QPQ 159
Query: 181 FSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTA 240
R AS RT P + + I PI A++PY+ KWTIKARVT
Sbjct: 160 AQRQLAS---RTGGGGGNSGP-------------LAATIYPIEAVSPYVNKWTIKARVTT 203
Query: 241 KGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSR-GSLK 299
K + + +GK+F + LD + GEIR T FN DQFY ++ G +Y +S ++
Sbjct: 204 KSYIGTWKRPTSEGKLFSVNFLD-ESGEIRATAFNTEVDQFYDLLQEGSVYYISTPCKVQ 262
Query: 300 PAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGV 359
A+K F+++ ND EI ++++ ED +S+P+ +F+F I +++ +E ++ +D+IGV
Sbjct: 263 MAKKQFSNVANDYEIMFQHDTVIEKA-EDQSSVPQVRFNFCTIQELQEVEKDATIDVIGV 321
Query: 360 VSYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFP 418
+ + + K + KR L L D +G SV +T+WG + D+ +
Sbjct: 322 LKDVGKQEEIQSKTTQKGYDKRELTLVDDTGYSVRVTIWGKAAAE--------FDASLES 373
Query: 419 ILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSV 478
++A K RVSDF G+ + +S+ + I+PD PEAH+LK W++ +G+ + + S+
Sbjct: 374 VVAFKGMRVSDFGGRSLSLLSSGTMAIDPDIPEAHKLKGWYDAQGRGNTTFATHSHLSSI 433
Query: 479 GRA----DIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNK 534
G A D K ++QIK E +G E + T+ TIV+++ +NF Y AC C+K
Sbjct: 434 GAAAGQKDEMKMIAQIKSENIGM-EDTAYFTIKGTIVHLRQENFAYPACI----SENCSK 488
Query: 535 KVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLY 594
KV + D +W C+RC+ + YRYI+ + DHTG TWV+ F + A IMG SA ++
Sbjct: 489 KVTPSMDDKWRCERCNITHDRAQYRYIMSADVSDHTGHTWVSCFDDSARIIMGKSADEMM 548
Query: 595 SLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
LK ++ D E A K +F+ + K +T+ D+
Sbjct: 549 ELK--NREDGSCAEAFEAANCRKMVFRCRAKMDTYGDQ 584
>gi|425772845|gb|EKV11231.1| hypothetical protein PDIP_56740 [Penicillium digitatum Pd1]
gi|425773582|gb|EKV11927.1| hypothetical protein PDIG_47360 [Penicillium digitatum PHI26]
Length = 1107
Score = 292 bits (747), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 159/447 (35%), Positives = 264/447 (59%), Gaps = 22/447 (4%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI A++PY KWTIKAR T+K ++ ++N+ G+GK+F +LLD D GEIR T FN
Sbjct: 173 IYPIEAISPYSNKWTIKARCTSKSSIKTWHNKNGEGKLFSVNLLD-DSGEIRGTGFNDQC 231
Query: 279 DQFYHQVEAGKIYLVSRG-SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
D Y + G +Y +S ++ A+K F +L+ND E+ + ++V+ E+ +P+ +F
Sbjct: 232 DMLYELFQEGSVYYISSPCRVQIAKKQFTNLNNDYELTFERDTIVEKA-EEQNDVPQIRF 290
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTL 396
+F + D++ +E ++ D+IGV+ + T+ + K+ G KR L L D +G SV LT+
Sbjct: 291 NFTTVADLQTVEKDTTTDVIGVLKDVGETSQITSKSTGKPYDKRELTLVDNTGFSVRLTI 350
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
WG N+ + + ++A K +VSDF G+ + +S+ + ++PD EAHRL+
Sbjct: 351 WGASANNFSVAPES--------VVAFKGVKVSDFGGRSLSLLSSGSMTVDPDIGEAHRLR 402
Query: 457 EWFEKEGKN---TQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYI 513
W++ +G++ T S+S + S G+ D KTV+Q+++E LG E PD+ ++ AT++YI
Sbjct: 403 GWYDAQGRSENFTSHASLSNATNSTGKTDRFKTVAQVREEQLGMSETPDYFSLKATVIYI 462
Query: 514 KCDN-FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
K D+ +CY AC CNKKV G+W C+ CD++ ++ +YR+I+ + DHTG
Sbjct: 463 KQDSTWCYPACL----SENCNKKVTELDPGQWRCEMCDKTHLKPEYRFIMPISVSDHTGQ 518
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
W++ F + IMGMSA +L L+ + + FGEV + A + F+ + K + F D+
Sbjct: 519 LWLSCFDDTGRNIMGMSADELMQLR--EDDPSAFGEVFQGANCQTWSFRCRAKIDNFGDQ 576
Query: 633 QRVKSTVVKAERYNYSSETRFILDLMD 659
QRV+ V ++ NYS E + D++D
Sbjct: 577 QRVRYQVSSSQAINYSDEASRLADIID 603
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 70/117 (59%), Gaps = 10/117 (8%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++Q + +K + + Q +Q +R+R V SD + Q MLATQ N +VT G L+ GS V
Sbjct: 28 PIVQCVQIKALPA-----QPNQPERYRAVFSDIANYVQTMLATQANSVVTDGSLRKGSFV 82
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVI--IDKCDPIGKPVPAQRPSSNE---QPGSVTGN 113
RL F N ++ + I+I+++L+V+ + + + IG+P P + + E QP +++ N
Sbjct: 83 RLKSFQSNSVKGKKILIILNLEVLKELGEAEKIGEPKPLEVKAEEEEVGQPTTISSN 139
>gi|340923669|gb|EGS18572.1| putative DNA replication protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 617
Score = 292 bits (747), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 165/449 (36%), Positives = 259/449 (57%), Gaps = 23/449 (5%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I P+ AL+PY KWTIK RV +K +R ++ G+GK+F+ L D + G+IR+T FN
Sbjct: 184 IYPVEALSPYNSKWTIKVRVRSKPPIRTWHKASGEGKLFNVILFD-ETGDIRMTGFNDAV 242
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D++Y ++ G++Y +S ++ AQ+ + +D E+ +D ++++ EDD S+P+ + +
Sbjct: 243 DRWYDVLQEGQVYYISGCKVRMAQRKLDARASDYEMVIDRDTVIEKA-EDDGSVPQVRLN 301
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTET-QKRTLHLRDMSGRSVELTLW 397
I D++ +E N++VD++GV+ + P S++ K + KR + L D +G SV LTLW
Sbjct: 302 LCNIQDLQNVEANTIVDVLGVIKEVGPVDSIISKTTQKPFDKRDITLVDDTGYSVRLTLW 361
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKE 457
G D+ I+A K +VSDFNG+ + +S+ +PD PEAHRLK
Sbjct: 362 GKQATS--------FDATEESIVAFKDCKVSDFNGRNLSLLSSGSWSADPDIPEAHRLKG 413
Query: 458 WFEKEGKNTQSV----SISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYI 513
W++ G+ TQS S+S + GR D KTV Q+KDE LG E+PD+ ++ TIV I
Sbjct: 414 WYDSMGR-TQSFLTHKSMSSVGAATGRKDDFKTVRQVKDENLGMGEQPDYFSLKGTIVAI 472
Query: 514 KCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLT 573
K DNFCY +C + + PCNKKV + GDG W C++CD + YRY L + DHTG
Sbjct: 473 KQDNFCYPSC--LTDNPPCNKKVTDMGDGTWRCEKCDVTHDRARYRYNLGVMVSDHTGHL 530
Query: 574 WVTAFQECAEEIMGMSAKDLYSLKYVDQNDE-KFGEVVRNATFTKYLFKLKVKEETFSDE 632
WVT F + A +MG +A +L SL Q D+ + A+ K F+++ K +TF D
Sbjct: 531 WVTCFDDIANVVMGRTADELVSL----QGDKAALDAIFEEASCQKLTFRVRAKMDTFGDM 586
Query: 633 QRVKSTVVKAERYNYSSETRFILDLMDKL 661
RV+ + A ++ SE + +L+ ++
Sbjct: 587 PRVRYQAMSATPIDFKSEGHKLAELIRQM 615
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 8/121 (6%)
Query: 1 MPVLQVMDLKLVVSKQQ-QQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGS 59
+PVLQ + +K + +Q QQ +R+R+VLSD Q MLATQ N +V G LQ
Sbjct: 27 VPVLQCLQIKTLSGQQTGAQQPGGAERYRIVLSDMRNYVQCMLATQANHVVHDGSLQRNC 86
Query: 60 VVRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
+VRL ++ ++ + +++V+DL+VI +G P P + + PQ+NA
Sbjct: 87 IVRLKQYQAQSVKGKWVLVVLDLEVIT----SLGTPDKIGEPKGLDTRDT---EPQANAM 139
Query: 120 G 120
G
Sbjct: 140 G 140
>gi|347441232|emb|CCD34153.1| similar to replication protein A 70 kDa DNA-binding subunit
[Botryotinia fuckeliana]
Length = 609
Score = 291 bits (746), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 171/473 (36%), Positives = 274/473 (57%), Gaps = 25/473 (5%)
Query: 193 PQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRG 252
PQ P Q ++ + G S + I PI +L+PY KWTIKARVT+K ++R ++
Sbjct: 149 PQQPAAQDRALPSRNG-PSSSSSHATIYPIESLSPYAHKWTIKARVTSKSDIRTWSKPNS 207
Query: 253 DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLV-SRGSLKPAQKNFNHLHND 311
+GK+F +LLD + GEI+ T FN D Y + G +Y + S ++ A+K F++++ND
Sbjct: 208 EGKLFSVNLLD-ESGEIKATGFNEQCDALYETFQEGSVYYITSPCRVQIAKKQFSNINND 266
Query: 312 LEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMR 371
E+ + ++V+ ED ++P+ +++F I D++ +E +S VDLI V+ + + +
Sbjct: 267 YELMFERDTLVEKA-EDQDNVPQVRYNFSNIGDLQSIEKDSTVDLIAVLKEVGEISEITS 325
Query: 372 KNGTET-QKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDF 430
K ++ KR L L D +G SV LT+WG + D+ ++A K +VSDF
Sbjct: 326 KTTSKPYSKRELTLVDETGYSVRLTIWG--------KTATSFDASPESVVAFKGVKVSDF 377
Query: 431 NGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVS---ISRDSLSVGRADIRKTV 487
G+ + +S+ + +PD EAH+LK W++ +G+ + S ++ + GR D KT+
Sbjct: 378 GGRSLSLLSSGSMSFDPDIQEAHKLKGWYDSQGRTSNFASHSNLASAGAAGGRQDPIKTI 437
Query: 488 SQIKDEGLG-TKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHC 546
+Q+KDEGLG ++E D+ + ATIVYIK DNFCY AC + CNKKV++ DG W C
Sbjct: 438 AQVKDEGLGMSEENTDYFSSRATIVYIKQDNFCYPACL----NENCNKKVVDQNDGTWRC 493
Query: 547 DRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKF 606
++C+QS + +YRYIL + DHTG W+TAF E IMG SA +L LK +ND
Sbjct: 494 EKCNQSHPKPEYRYILALNVNDHTGQMWLTAFDEVGRLIMGKSADELMELK---ENDPPA 550
Query: 607 GE-VVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLM 658
E V +A FK++ K +T+ D+ RV+ +V+ A NY+++ + +L+
Sbjct: 551 MERVFEDANCKMMTFKVRCKTDTYQDQARVRYSVMSALAVNYAADALKLAELI 603
Score = 42.7 bits (99), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 23 QQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNR 74
Q +RFR+V+SD Q MLATQ N ++ G L G +RL + N ++ +
Sbjct: 47 QAERFRLVVSDIQNFVQCMLATQANHVIHDGKLTKGCFIRLKNYQANEVKGK 98
>gi|346324124|gb|EGX93721.1| replication factor-A protein 1 [Cordyceps militaris CM01]
Length = 598
Score = 291 bits (745), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 164/466 (35%), Positives = 268/466 (57%), Gaps = 35/466 (7%)
Query: 192 TPQAPYMQS-PSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQ 250
TPQ M S P+M+A + I PI L+P+ KWTIKARVT+K E++ ++
Sbjct: 146 TPQQQTMPSRPAMHAG----------NNIYPIEGLSPFSHKWTIKARVTSKSEIKTWHKA 195
Query: 251 RGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSR-GSLKPAQKNFNHLH 309
G+GK+F +LLD + GEI+ T FN D FY ++ G +Y +S + A+K F++L
Sbjct: 196 TGEGKLFSVNLLD-ESGEIKCTGFNDQCDAFYELLQEGSVYYISTPCRVNLAKKQFSNLP 254
Query: 310 NDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASL 369
ND E+ + ++++ ED ++P+ +F+F I +++ +E ++ VD+IGV+ + +
Sbjct: 255 NDYELAFERDTVIEKA-EDQTNVPQVRFNFSTIQELQSVEKDNTVDIIGVLKEAGEISEI 313
Query: 370 M-RKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVS 428
+ +K G QKR L + D +G SV +T+WG + D+ ++A K +VS
Sbjct: 314 VSKKTGAPYQKRELTMVDDTGYSVRVTIWG--------KTASSFDAQPESVVAFKGTKVS 365
Query: 429 DFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKN---TQSVSISRDSLSVGRADIRK 485
DF GK + +S+ + ++PD P+AHRLK W++ G+N T +++ + GR D K
Sbjct: 366 DFGGKSLSLLSSGTISVDPDIPDAHRLKGWYDSAGRNDNFTTHQNLASVGAAAGRTDEIK 425
Query: 486 TVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWH 545
T++Q+K+E LG ++ + T+ ATIV++K DNFCY AC + CNKKV + GDG W
Sbjct: 426 TIAQVKEENLGVDDQA-YYTIKATIVFVKQDNFCYPACL----SQGCNKKVQDMGDGTWR 480
Query: 546 CDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDE- 604
C++C+ S + +YRY++ F + DHT W++ F E I+GMSA +L LK +NDE
Sbjct: 481 CEKCNLSHDKPEYRYVMNFNVADHTSHQWLSCFDESGRAIVGMSADELMDLK---ENDEA 537
Query: 605 KFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSE 650
KF K F+ + + + + + QRV+ V+ A ++ SE
Sbjct: 538 KFMATFEAVNCKKLQFRCRARMDNYGEVQRVRYQVMTASFLDFKSE 583
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 18/155 (11%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
+P +Q + +K + Q R+R+V+SDG Q MLATQ N +V L G +
Sbjct: 28 IPTMQCLQVKQMAPSAQGGD-----RYRLVMSDGKHYVQTMLATQANHVVHDEKLVRGCI 82
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVI--IDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNA 118
R+ ++T N ++ + I+I++DL+VI D IG+P + S ++ GN +
Sbjct: 83 ARVKQYTPNNLKGKNILIILDLEVIESYGILDKIGEPSAVE---SKAAETTIAGN---DF 136
Query: 119 TGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPP 153
GV + + +P A H G+N+ P
Sbjct: 137 YGVKKEEKPTPQQQTMPS-----RPAMHAGNNIYP 166
>gi|360042651|emb|CCD78061.1| putative replication factor A 1, rfa1 [Schistosoma mansoni]
Length = 560
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 203/642 (31%), Positives = 312/642 (48%), Gaps = 105/642 (16%)
Query: 41 MLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQR 100
MLATQ N L+ L +V+R+ K CN IQN +V+++ LD+ I D V +
Sbjct: 1 MLATQLNHLIEENKLVNNTVIRVRKHVCNNIQNNKVVLIV-LDLDILGTDDSSGGVKS-- 57
Query: 101 PSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEV 160
EQP +V A PA S P P+
Sbjct: 58 ----EQPPTV-----------------------------AKPATTTSHSYEPEQKTPPKS 84
Query: 161 GAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRII 220
G P++ TP P P R+
Sbjct: 85 STG--------------------PFSGGQPSTPGTPGCGLP----------------RVF 108
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PI +LNPY +WTI+ARV+ K +R ++ Q DGK+F+F L+D + GEIRVT FNA D+
Sbjct: 109 PIQSLNPYQNRWTIRARVSQKSAIRTWSKQGRDGKLFNFTLVD-ESGEIRVTGFNAEVDK 167
Query: 281 FYHQVEAG-----KIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDD-ASIPR 334
FY +EA K+Y VSR +LK A K FN +ND E+ L S V C + D +S+P
Sbjct: 168 FYDMIEASNMFVNKVYYVSRANLKAANKQFNTTNNDYEMTLHSDSQVLPCEDSDTSSLPE 227
Query: 335 QQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVE 393
F+F I ++ S VD++GVV S+ K + E +KR L L D S V
Sbjct: 228 THFNFISIGKLDTQSPGSFVDIVGVVHECGEVQSITAKASQRELRKRELGLVDSSNCLVR 287
Query: 394 LTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEP-DFPEA 452
LTLWG ++ + H P++ +KA ++SDFNG+ + T+ L I P + PEA
Sbjct: 288 LTLWGEEA-ENFVGASH-------PVIVIKAAKISDFNGRSLSVSPTSSLLISPTNIPEA 339
Query: 453 HRLKEWFEKEGKNTQSVSISRDSL-SVGRADIRKTVS----------QIKDEGLGTKEKP 501
RLK W+E EG+ + + + + S G AD + S +K G+G K
Sbjct: 340 IRLKGWYEHEGRFSNFETFRSEMVGSSGGADGVSSSSGVLGGWNLLQDVKASGVGANVKA 399
Query: 502 DWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYI 561
D+ T AT+V++K +NF Y AC CNKKV++ G+G + C++C + +C +R +
Sbjct: 400 DYFTCKATVVFMKKENFMYQAC----STEGCNKKVIDLGNGLYRCEKCARETPDCKWRLL 455
Query: 562 LQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFK 621
L +I D TG WVT FQ+ AE ++G +A+ L ++K Q++ + +V + F ++F+
Sbjct: 456 LMAKIADITGDLWVTCFQDAAEVLLGQTAEKLGTIKST-QDETQLEKVFIESAFNSWIFR 514
Query: 622 LKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKS 663
L+ K + ++DE+R++ V + + +R +L ++ L +
Sbjct: 515 LRAKVDRYNDEERLRVVVADVKPVDLVDYSRRLLKAINDLSA 556
>gi|322799305|gb|EFZ20693.1| hypothetical protein SINV_03263 [Solenopsis invicta]
Length = 588
Score = 291 bits (744), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 166/446 (37%), Positives = 247/446 (55%), Gaps = 22/446 (4%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PIAAL+PY +W IKARV K ++ ++N RG+GK+F DL+D + GEIR T F V D+
Sbjct: 152 PIAALSPYQNRWVIKARVINKSPIKTWSNSRGEGKLFSMDLID-ESGEIRCTAFRDVVDK 210
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
FY + G IY +SR LK A K FN + ND E+ ++ + + C++ IP QF+F
Sbjct: 211 FYDLIVTGNIYYISRCVLKAANKQFNTMKNDYEMTMNSDTEIVPCHDSSNDIPTLQFNFS 270
Query: 341 PINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWGN 399
PI+ VE E N ++D++GVV+ + + R G E KR + + D SG V +TLWG
Sbjct: 271 PISQVESKEKNDLLDVLGVVTTVGDVQHITARTTGRELIKRDISIVDDSGTMVTVTLWGT 330
Query: 400 FCNDDGLRLQHMCDSGVFPILAVKAGRVSDFN-GKVVGTISTTQLFIEPDFPEAHRLKEW 458
+ G + I+A+K RV +FN GK + + ++ + +PD PEAHRL+ W
Sbjct: 331 QAEEFG--------ASNNTIIAIKGARVGEFNGGKNLSLVMSSIIEKDPDIPEAHRLRGW 382
Query: 459 FEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEK-PDWITVSATIVYIKCDN 517
+ G + + S+SR S T + D LG K PD T ATI I+ +N
Sbjct: 383 YTAVGHSETAKSLSRVGGSTDFNGPLYTFQEATDARLGEKMNLPDSFTAVATIKQIRTEN 442
Query: 518 FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTA 577
Y ACP+ C KK+++ +G + C++C++ YR + ++ D TG W+TA
Sbjct: 443 SLYRACPV----ESCKKKLIDQDNGIFRCEKCNKEYPNFTYRLLASMELADATGSRWITA 498
Query: 578 FQECAEEIMGMSAKDLYSLKYVDQND--EKFGEVVRNATFTKYLFKLKVKEETFSDEQRV 635
F E AE+I+GMSA++L LK D++ +KFGE ATF ++F LK + E F DE R+
Sbjct: 499 FNEEAEKILGMSAQELGELKENDKDAYLQKFGE----ATFKTFMFNLKARSEVFQDEMRI 554
Query: 636 KSTVVKAERYNYSSETRFILDLMDKL 661
K A NY + ++D + KL
Sbjct: 555 KHVCTSAGPINYKTYLPHLIDKVSKL 580
>gi|448117323|ref|XP_004203227.1| Piso0_000828 [Millerozyma farinosa CBS 7064]
gi|359384095|emb|CCE78799.1| Piso0_000828 [Millerozyma farinosa CBS 7064]
Length = 629
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 147/448 (32%), Positives = 258/448 (57%), Gaps = 28/448 (6%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQF 281
I L+PY WTIKARV+ KG++R ++N RG+GK+F+ + LD + EIR T FN +AD+F
Sbjct: 188 IEQLSPYQNHWTIKARVSYKGDIRKWSNARGEGKLFNVNFLD-ESDEIRATAFNDLADKF 246
Query: 282 YHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRP 341
Y Q+E GK+Y VS+ ++ ++ F+HL + E+ LD ++++ C+ D +++P+ F+F
Sbjct: 247 YQQLEEGKVYYVSKARIQQSKPQFSHLSHPYELALDRDTVIEECF-DTSNVPKIHFNFTK 305
Query: 342 INDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWG-- 398
+ND+E E NS+VD+IGV+ ++P + K+ G +R + + D S ++ + LW
Sbjct: 306 LNDIENAEANSIVDVIGVLKEVNPVFQITAKSTGKPFDRRNITIVDDSNVAITVGLWNTS 365
Query: 399 --NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
+F +G ++A K ++ DF G+ + + + PD PEA+ LK
Sbjct: 366 AVDFTVSEG------------SVIAFKGCKIQDFAGRSLTLTHAGSMMVNPDTPEAYSLK 413
Query: 457 EWFEKEGKNTQSVSISRDSLSVGRA-DIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKC 515
WF+ +G + S+ ++ + A + RK++ Q ++E LG EKPD+ + ATI + K
Sbjct: 414 GWFDNKGVHENFKSLKNENSATKNAFNSRKSILQAQEENLGMSEKPDFFNIKATINFFKT 473
Query: 516 DNFCYTACPIMIGD------RPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDH 569
+NFCY AC ++ CN+KV+ DG W C++CD + E YRYIL + D
Sbjct: 474 ENFCYPACNNVLDSGSQQLSNTCNRKVVEQSDGTWRCEKCDMNFAEPHYRYILNCSVMDS 533
Query: 570 TGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDE--KFGEVVRNATFTKYLFKLKVKEE 627
TG W+T F + A+++ G+ A +L LK N E +F +++ + T + F+LK +++
Sbjct: 534 TGQLWITLFDQEAQKLFGIPAGELLKLKEQQMNGENSEFQKIINDVTMKGFNFRLKARQD 593
Query: 628 TFSDEQRVKSTVVKAERYNYSSETRFIL 655
+++ RV+ V+ ++++E ++
Sbjct: 594 SYNGVLRVRYQVLSISDVDFNAECDHLI 621
>gi|302913119|ref|XP_003050848.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256731786|gb|EEU45135.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 611
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 159/442 (35%), Positives = 260/442 (58%), Gaps = 27/442 (6%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
S I PI L+P+ KWTIKARVT+K +++ ++ G+GK+F +LLD + GEI+ T FN
Sbjct: 173 SNIYPIEGLSPFAHKWTIKARVTSKSDIKTWHKATGEGKLFSVNLLD-ESGEIKATGFNE 231
Query: 277 VADQFYHQVEAGKIYLVS---RGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIP 333
D FY +++ G +Y +S R SL A+K F++L ND E+ + ++++ ED ++P
Sbjct: 232 QCDAFYDRLQEGSVYYISTPCRVSL--AKKQFSNLPNDYELAFERDTVIEKA-EDQTNVP 288
Query: 334 RQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSV 392
+ +F+F I +++ +E ++ VD+IGV+ + ++ +K+G QKR L L D +G SV
Sbjct: 289 QVRFNFCTIQELQSVEKDNTVDVIGVLKEVGEIGEIVSKKDGRPFQKRELTLVDDTGYSV 348
Query: 393 ELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEA 452
+T+WG N D+ ++A K +VSDF GK + +S+ + ++PD +A
Sbjct: 349 RVTVWGKTANS--------FDAPAESVVAFKGTKVSDFGGKSLSLLSSGTMSVDPDIADA 400
Query: 453 HRLKEWFEKEGKNTQSVSISRDSLSVG----RADIRKTVSQIKDEGLGTKEKPDWITVSA 508
HRLK W++ G+ T + + + S+G R D KT+SQ+KDE LG ++ + T+ A
Sbjct: 401 HRLKGWYDSAGR-TDTFATHQGMASMGNATGRKDEIKTISQVKDENLGMDDQA-YYTIKA 458
Query: 509 TIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQD 568
TIV++K D FCY AC + CNKKV GDG WHC++C+ S + +YRYIL + D
Sbjct: 459 TIVFMKQDTFCYPAC----ASQGCNKKVTEMGDGTWHCEKCNVSHEKPEYRYILSLNVAD 514
Query: 569 HTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEET 628
HT W++ F + ++I+G +A ++ LK D + KF A K F+ + K +
Sbjct: 515 HTSHQWLSCFDDSGQKILGRTANEMMELKESD-DPTKFTAAFEEANCKKLTFRCRAKMDN 573
Query: 629 FSDEQRVKSTVVKAERYNYSSE 650
F + QR++ V+ A +++SE
Sbjct: 574 FGEAQRIRYQVMSAMPLDFTSE 595
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 64/115 (55%), Gaps = 10/115 (8%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
+PVLQ + +K + Q + R+R+V+SDG Q MLATQ N +V L G
Sbjct: 28 VPVLQCLQVKQMAPSAQGGE-----RYRLVMSDGQHYVQTMLATQANHVVRDNKLVRGCF 82
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVI--IDKCDPIGKPVPAQ-RPSSNEQPGSVTG 112
R+ ++T N ++ + I++++DL+V+ + D IG+PV +P E G++ G
Sbjct: 83 ARIKQYTPNNLKGKNILVILDLEVVESLGIQDKIGEPVAVDAKPPGQE--GAIAG 135
>gi|68472689|ref|XP_719663.1| hypothetical protein CaO19.9640 [Candida albicans SC5314]
gi|68472948|ref|XP_719539.1| hypothetical protein CaO19.2093 [Candida albicans SC5314]
gi|46441361|gb|EAL00659.1| hypothetical protein CaO19.2093 [Candida albicans SC5314]
gi|46441490|gb|EAL00787.1| hypothetical protein CaO19.9640 [Candida albicans SC5314]
gi|238881852|gb|EEQ45490.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 624
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 181/655 (27%), Positives = 327/655 (49%), Gaps = 95/655 (14%)
Query: 25 QRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNRMIVIVMDLDV 84
++FR++++DG S G++ +E + + Q ++V++ F+ VI
Sbjct: 45 KKFRILVNDGVYSTHGLIDESCSEYIKNNNCQRYAIVQVNAFSIFATSKHFFVI------ 98
Query: 85 IIDKCDPIGKPVPAQRPSSNEQPGSVT-------GNPQSNATGVSLQHHNNTRVSQLPGD 137
K P+S + P ++ +P+ N V + + R S +PG
Sbjct: 99 ---------KNFEVLAPTSEKSPNNIIPIDTYFLEHPEENYLTVMKKSESRDRESPVPGV 149
Query: 138 TDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPY 197
T P A+ S FK EVG G +
Sbjct: 150 TP--PLAQSTNS------FKSEVGGGVAA------------------------------- 170
Query: 198 MQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVF 257
QS +R ++ PI ++PY WTIKARV+ KG+LR ++N +G+GKVF
Sbjct: 171 -QSKPAGTHR----------KVSPIETISPYQNNWTIKARVSYKGDLRTWSNSKGEGKVF 219
Query: 258 HFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLD 317
F+LLD + EI+ + FN A++ + +E GK+Y +S+ + A+K FN L + E+ D
Sbjct: 220 GFNLLD-ESDEIKASAFNETAERAHKLLEEGKVYYISKARVAAARKKFNTLSHPYELTFD 278
Query: 318 MTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTE 376
+ + C+ D++ +P+ F+F ++ V+ +E N+++D++G + + P + K+ G
Sbjct: 279 KDTEITECF-DESDVPKLNFNFVKLDQVQNLEANAIIDVLGALKTVFPPFQITAKSTGKV 337
Query: 377 TQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVG 436
+R + + D +G +EL LW N D + + G ++AVK +VSD++G+ +
Sbjct: 338 FDRRNILVVDETGFGIELGLWNNTATDFNI------EEGT--VVAVKGCKVSDYDGRTLS 389
Query: 437 TISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADI--RKTVSQIKDEG 494
+ P PE+ +LK W++ G + S+ D+ G I R +++Q +E
Sbjct: 390 LTQAGSIIPNPGTPESFKLKGWYDNIGIHESFKSLKIDNAGSGGDKISQRISINQALEEH 449
Query: 495 LGTKEKPDWITVSATIVYIKCDNFCYTACPIMI----GDRP---CNKK-VMNNGDGRWHC 546
G+ EKPD+ ++ A++ + K +NF Y ACP ++ RP CNKK V + DG W C
Sbjct: 450 SGSTEKPDYFSIKASVTFCKPENFAYPACPNLVQNADATRPAQVCNKKLVFQDNDGTWRC 509
Query: 547 DRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKF 606
+RC ++ E +RY+L + D TG WVT F + AE+++G+ A +L +K +Q E
Sbjct: 510 ERCAKTYEEPTWRYVLSCSVTDSTGHMWVTLFNDQAEKLLGIDATEL--VKKKEQKSEVA 567
Query: 607 GEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
+++ N F ++ ++K K+ET++DE + + + +Y+SE++F++ +D+L
Sbjct: 568 NQIMNNTLFKEFSLRVKAKQETYNDELKTRYSAAGINELDYASESQFLIKKLDQL 622
>gi|366997334|ref|XP_003678429.1| hypothetical protein NCAS_0J01120 [Naumovozyma castellii CBS 4309]
gi|342304301|emb|CCC72091.1| hypothetical protein NCAS_0J01120 [Naumovozyma castellii CBS 4309]
Length = 613
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 155/483 (32%), Positives = 266/483 (55%), Gaps = 31/483 (6%)
Query: 194 QAPYMQSPSMYANRGLVGKSEVPSR-------IIPIAALNPYMGKWTIKARVTAKGELRH 246
QAP++ +P + PS I I L+PY WTIKARV+ KGE++
Sbjct: 144 QAPFVPTPQQQPQHSTTSSTNFPSSHSQKSKAIFAIEQLSPYQNAWTIKARVSYKGEIKK 203
Query: 247 YNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFN 306
++NQRGDG +F+ + LD+ GEIR T FN A++FY ++ GK+Y VS+ L+PA+ F
Sbjct: 204 WHNQRGDGCLFNVNFLDT-SGEIRATAFNENAEKFYEILQEGKVYYVSKARLQPAKPQFT 262
Query: 307 HLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPT 366
+L + E+ +D ++V+ C+++D ++P+ F+F ++ V+ ENN+ VD++G++ ++P
Sbjct: 263 NLTHPYELSMDRETVVEECHDED-NVPKTHFNFIKLDAVQNQENNTNVDVLGIIKTVNPH 321
Query: 367 ASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGR 426
L + G +R + + D +G + + LW D L G ++A+K R
Sbjct: 322 FELTSRAGKRFDRRDISIVDDTGFEISVGLWNQQALDFNL------PEG--SVVAIKGVR 373
Query: 427 VSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSL--SVGRADIR 484
VSDF GK + + L P+ PEA LK W++ G+ S+ +++ ++ ++
Sbjct: 374 VSDFGGKSLSMGFNSTLVSNPEIPEAFSLKGWYDNTGRTGHFTSLKQENGMGAISAENLT 433
Query: 485 K------TVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMN 538
K T+S+ E LG EK D+ +V A I ++K DNF Y AC + CNKKV+
Sbjct: 434 KFISQRITISRAIAENLGKSEKGDYFSVKAAISFLKVDNFAYPAC----SNENCNKKVIE 489
Query: 539 NGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKY 598
DG W C++C+ + ++RY+L I D T W+T F E A++++ + A L +LK
Sbjct: 490 QPDGTWRCEKCETNNPAPEWRYMLTISIMDETNQLWLTLFNEQAQQLLEVDANTLIALK- 548
Query: 599 VDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLM 658
D + E+F + +N +Y F+++ +E+ ++D+ R++ TV + NY E F+ +
Sbjct: 549 -DNDPEEFTKRTQNIQMNEYDFRIRAREDNYNDQTRIRYTVANIHKLNYKVEADFLATEL 607
Query: 659 DKL 661
K+
Sbjct: 608 SKV 610
>gi|340522901|gb|EGR53134.1| replication factor A-like protein [Trichoderma reesei QM6a]
Length = 600
Score = 290 bits (741), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 162/453 (35%), Positives = 265/453 (58%), Gaps = 28/453 (6%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
+ I PI AL+P+ KWTIKARVT K +++ ++ G+GK+F +LLD + GEI+ T FN
Sbjct: 166 ANIYPIEALSPFSSKWTIKARVTFKSDIKTWHKPTGEGKLFSVNLLD-ESGEIKATGFND 224
Query: 277 VADQFYHQVEAGKIYLVS---RGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIP 333
D FY ++ G +Y +S R SL A+K F++L ND E+ + ++++ ED ++P
Sbjct: 225 QCDAFYDILQEGSVYYISSPCRVSL--AKKQFSNLPNDYELAFERETVIEKA-EDQTNVP 281
Query: 334 RQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSV 392
+ +F+F I +++ +E +S VD+IGV+ + + + +K+G QKR L L D +G SV
Sbjct: 282 QVRFNFCTIQELQSVEKDSTVDVIGVLKEVGEVSEITSKKDGRPFQKRELTLVDDTGYSV 341
Query: 393 ELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEA 452
+T+WG + D+ ++A K +VSDF GK + +S+ + ++PD P+A
Sbjct: 342 RVTIWG--------KTASSFDANPESVVAFKGTKVSDFGGKSLSLLSSGTMTVDPDIPDA 393
Query: 453 HRLKEWFEKEGKNTQSVSISRDSLSV----GRADIRKTVSQIKDEGLGTKEKPDWITVSA 508
+RLK W++ G+ T + + ++ V GR + KT++Q+KDE LG ++ + T+ A
Sbjct: 394 YRLKGWYDSVGR-TDTFATHQNLAGVAGATGRKEEIKTIAQVKDENLGVDDQA-YYTIKA 451
Query: 509 TIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQD 568
TIV++K D+FCY AC ++ CNKKV DG W C++C S + DYRYI+Q + D
Sbjct: 452 TIVFVKQDSFCYPAC----SNQGCNKKVTPMPDGTWQCEKCSVSHDKPDYRYIMQLNVAD 507
Query: 569 HTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEET 628
HT W++ F + I+GMSA +L LK + +D KF K +F+ + K +
Sbjct: 508 HTSHQWLSCFDDTGRIIVGMSANELMELK--ENDDAKFMAAFEAVNCKKLMFRCRAKMDN 565
Query: 629 FSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
F D QRV+ V+ A +Y SE +++L+ +
Sbjct: 566 FGDTQRVRYQVMSASLIDYKSEGHKLVELIKQF 598
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 57/98 (58%), Gaps = 7/98 (7%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
+PV+Q + +K + Q R+R+V+SDG Q MLATQ N ++ L+ G +
Sbjct: 28 VPVMQCLQIKQMAPSGQGGD-----RYRLVMSDGVNYVQTMLATQANHVIHDNKLERGCL 82
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVI--IDKCDPIGKPV 96
R+ ++T N ++ + I++++DL+VI + + IG PV
Sbjct: 83 TRVKQYTPNNLKGKNILVILDLEVIESLGVHEKIGDPV 120
>gi|213408425|ref|XP_002174983.1| replication factor-A protein [Schizosaccharomyces japonicus yFS275]
gi|212003030|gb|EEB08690.1| replication factor-A protein [Schizosaccharomyces japonicus yFS275]
Length = 608
Score = 289 bits (740), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 148/445 (33%), Positives = 257/445 (57%), Gaps = 23/445 (5%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI L+PY KWTI+ARVT K E++H++NQRG+GK+F +LLD + GEIR T FN
Sbjct: 179 IYPIEGLSPYQNKWTIRARVTNKSEIKHWHNQRGEGKLFSVNLLD-ESGEIRATGFNEQV 237
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D FY ++ G++Y +S+ + A+K F+++ N+ E+ + + ++ ED ++P +F+
Sbjct: 238 DAFYDILQEGQVYFISKCRVNIAKKQFSNVQNEYELMFERDTEIKKS-EDQNAVPMARFN 296
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLW 397
F + +V + ++++D+IGV+ I P + R KR + + D SG + +T+W
Sbjct: 297 FVTLEEVGKVAKDAIIDVIGVLQNIGPVQQITSRATSRGFDKRDITIVDQSGFEMRMTVW 356
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKE 457
G D + + I+A K +V+DF G+ + ++++ + +PD PEAH LK
Sbjct: 357 GKQAIDFSVPEE--------SIIAFKGVKVNDFQGRSLSMLNSSTMTTDPDIPEAHTLKG 408
Query: 458 WFEKEGKNTQSVSISRDSLSVG----RADIRKTVSQIKDEGLGTKEKPDWITVSATIVYI 513
W++ +G+ Q + +VG R RKTV++++ + LG E PD+ ++ AT+VYI
Sbjct: 409 WYDGQGR-AQDFMKHSSAATVGSGTNRTAERKTVAEVQAQHLGMSETPDYFSLKATVVYI 467
Query: 514 KCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLT 573
+ N Y ACP CNKKV + G G WHC++C++ YRYI+ DHTG
Sbjct: 468 RKKNISYPACPT----PDCNKKVFDQG-GSWHCEKCNKDYEAPHYRYIMTIAAGDHTGQL 522
Query: 574 WVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQ 633
W+ F + +MG +A +L +++ D+N+ F V+ +A++ Y+F+ + K++ F E
Sbjct: 523 WLNVFDDVGRILMGKTADELNAMQENDENE--FTSVMSDASYVPYVFECRAKQDNFKGEV 580
Query: 634 RVKSTVVKAERYNYSSETRFILDLM 658
RV+ T + ++ E++ ++DL+
Sbjct: 581 RVRYTAMSVRNIDWKQESKRLVDLI 605
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 56/96 (58%), Gaps = 5/96 (5%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQV+ +K + S +R+R+V SD Q ML+TQ N LV L G+ V
Sbjct: 26 PVLQVLTVKELNS---NPTSGAPKRYRVVFSDSQNYAQSMLSTQLNHLVMENKLVKGAFV 82
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVI--IDKCDPIGKP 95
+LT+FT NV++ R I+IV+ L+V+ + + IG P
Sbjct: 83 QLTQFTVNVMKERKILIVLGLNVLPELGISEKIGNP 118
>gi|410075269|ref|XP_003955217.1| hypothetical protein KAFR_0A06470 [Kazachstania africana CBS 2517]
gi|372461799|emb|CCF56082.1| hypothetical protein KAFR_0A06470 [Kazachstania africana CBS 2517]
Length = 618
Score = 289 bits (740), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 154/460 (33%), Positives = 259/460 (56%), Gaps = 26/460 (5%)
Query: 211 GKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIR 270
G S+ I I L+PY WTIKARV+ KGE++ +NNQ+G GK+F+ + LD+ GEIR
Sbjct: 171 GTSQKSKPIFAIEQLSPYQNIWTIKARVSYKGEIKEWNNQKGSGKLFNANFLDT-SGEIR 229
Query: 271 VTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDA 330
T FN A ++ ++ GK+Y +S+ L+PA+ F++L + E+ LD + ++ C+ D++
Sbjct: 230 ATAFNEWAVKYSEILQEGKVYYISKARLQPAKPQFSNLSHPYELSLDRDTQIEECF-DES 288
Query: 331 SIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGR 390
++P+ F+F +N ++ ENNS +D+IG++ + P L + G + +R + L D S
Sbjct: 289 NVPKTHFNFIKLNSIQNQENNSTIDVIGIIQTVGPHFELTSRAGKKFDRRDITLVDDSNY 348
Query: 391 SVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFP 450
S+ + LW D L G ++A+K RVSDF GK + T+ L PD
Sbjct: 349 SIPVGLWNQQAIDFNL------PEG--SVVAIKGVRVSDFGGKTLSMGFTSTLVPSPDIN 400
Query: 451 EAHRLKEWFEKEGKNTQSVSISRD---SLSVGRAD-------IRKTVSQIKDEGLGTKEK 500
EA+ LK W++ G+N+ S+ ++ S SV + R T+++ +++ LG E+
Sbjct: 401 EAYSLKGWYDSVGQNSNFTSLKQEADGSSSVNGGENATKFISQRITIARAQEDNLGRSER 460
Query: 501 PDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRY 560
D+ +V A + ++K DNF Y AC + CNKKV+ DG W C++CD + +RY
Sbjct: 461 GDFFSVKAAVSFLKVDNFAYPAC----SNEGCNKKVLEQSDGTWRCEKCDINNPSPRWRY 516
Query: 561 ILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLF 620
+L I D T W+T F + AE+++G SA L LK D N +F +V + +Y F
Sbjct: 517 VLTISIMDETNQLWLTLFDDQAEQLLGTSANKLMELKETDPN--QFTKVTQAIQMNQYDF 574
Query: 621 KLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDK 660
+++ +E+ ++D+ R++ TV + N +E ++ D + K
Sbjct: 575 RIRAREDNYNDQTRIRYTVAFLHKINQKAEADYLADYLSK 614
>gi|348683769|gb|EGZ23584.1| hypothetical protein PHYSODRAFT_556228 [Phytophthora sojae]
Length = 629
Score = 289 bits (740), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 206/667 (30%), Positives = 319/667 (47%), Gaps = 80/667 (11%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P LQ++D K K + R+R+VLSDG+ GMLATQ ++ + L+ V+
Sbjct: 23 PWLQIIDTK----KIKPASGTGGDRYRIVLSDGTSYISGMLATQLAPMMENESLKTNYVL 78
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGV 121
+L + N +Q R I+IV+ + I+ D IG P S+ G S +
Sbjct: 79 QLKDYLGNEVQGRRILIVLSIGDIVPAFDRIG------------NPQSIEG---SKGAPI 123
Query: 122 SLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEF 181
+ + G A P +SF P
Sbjct: 124 PAAPAASAPPAASLGARPAAPV---------------------------QSSFQQP---- 152
Query: 182 SRPYASNYARTPQAPYMQSPSMYA-----NRGLVGKSEVPSRIIPIAALNPYMG-KWTIK 235
S P + Y + P AP +P NRG V + + R+ I +LNPY G +WTIK
Sbjct: 153 SAP-VNQYNQPPAAPLSYAPPAKPAPSAYNRGPVVRQDPNVRLSDIQSLNPYAGGRWTIK 211
Query: 236 ARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSR 295
ARVT + ++++ N RG GK+F DLLD+ GGEIR T FN D+FY + G ++ +
Sbjct: 212 ARVTNRAPIKNWTNARGSGKLFSVDLLDARGGEIRATFFNDGVDKFYETLRPGGVFYFAG 271
Query: 296 GSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVD 355
G +K A + F+ + ND E+ D S + E D I + + F+ I ++E + + VD
Sbjct: 272 GKVKMANRRFSSVDNDYEVTFDQHSDISPAPE-DGQISQMNYTFKKIAEIESVPAEANVD 330
Query: 356 LIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSG 415
+IG+V + + K G + KR + L D S ++ T+W +D C S
Sbjct: 331 VIGIVRDVGQVNEITSKAGKQLFKRDISLVDDSNAEIKCTMWNERAKED-------CSSW 383
Query: 416 VFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDS 475
+ ++A+K RVSD+NG+ +GT+ ++ + P PEA L WF G Q+ S+S
Sbjct: 384 LNQVVAIKGCRVSDYNGRSIGTMMSSSFTVNPTIPEAGHLVNWFSNGGNAAQTKSLSSGG 443
Query: 476 LSVGRADI-----RKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDN-FCYTACPIMIGD 529
G + R ++ IK + LG +KPD+ITV T+ +IK D Y ACP
Sbjct: 444 GGFGGGSLGTFAERAVINDIKGKQLGFGQKPDYITVKGTVNFIKHDTGVFYQACP----- 498
Query: 530 RPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM-GM 588
C KKV+ + + C++C S C+ RYIL + DHTG TW T F + + +M G
Sbjct: 499 -KCQKKVVADVAQNYTCEKCQTSYSNCENRYILSVVMLDHTGSTWTTCFNDQGKVVMNGR 557
Query: 589 SAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYS 648
+A ++ L+ D N + + A F +Y+ +L+VK E +E RVK+ VV E N+
Sbjct: 558 TADEIGELR--DTNPTLYESTFKEALFKQYVCRLRVKAENVQEELRVKAGVVNLEPVNFV 615
Query: 649 SETRFIL 655
E++ +L
Sbjct: 616 QESKDLL 622
>gi|169852738|ref|XP_001833051.1| replication factor-A protein 1 [Coprinopsis cinerea okayama7#130]
gi|116505845|gb|EAU88740.1| replication factor-A protein 1 [Coprinopsis cinerea okayama7#130]
Length = 604
Score = 289 bits (740), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 154/449 (34%), Positives = 250/449 (55%), Gaps = 23/449 (5%)
Query: 216 PSR-IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCF 274
P R + PI L+PY WTIKARVT K E++ ++N +G+GK+F+ +D D GEIR T F
Sbjct: 167 PQRGVYPIEGLSPYQNNWTIKARVTQKSEMKQWSNAQGEGKLFNVTFMD-DSGEIRATAF 225
Query: 275 NAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPR 334
N VAD Y ++E GK+Y VS+ + A+K F+++ ND E+ L+ + ++ C+E ++P
Sbjct: 226 NLVADDLYPKLEEGKVYYVSKARVGLAKKKFSNIPNDYELSLERNTEIEECHE-TTNLPT 284
Query: 335 QQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVE 393
+++F P+N ++ + +++ D+IGVV + ++ R N + KR L L D S SV
Sbjct: 285 IKYNFVPLNGLDALAKDAICDVIGVVKDVGEVGTITSRSNNRQISKRDLTLVDKSAYSVR 344
Query: 394 LTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAH 453
+TLWG + + I+A K RV DFNG+ + S + + + PD E
Sbjct: 345 MTLWGKQAEQFKVEPES--------IIAFKGVRVGDFNGRNLSMTSASTMQVNPDIEECF 396
Query: 454 RLKEWFEKEGKNTQSVSISRDSL---SVG-RADIRKTVSQIKDEGLGTKEKPDWITVSAT 509
L+ W++ +G+ + S ++L S+G R D +T+ +K G G +KPD+ + AT
Sbjct: 397 TLRGWYDSQGQTQTFQAQSSNNLGGTSLGFRRDEARTLEDVKQAGFGQSDKPDYFSTRAT 456
Query: 510 IVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDH 569
I++IK DN Y ACP + CNKKV+ DG W C++C++ +YRYI+ + DH
Sbjct: 457 IIHIKDDNIAYPACPT----QGCNKKVIEEADG-WRCEKCEKVFEAPEYRYIMSMMVADH 511
Query: 570 TGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETF 629
TG W F E + GMSA DL +K D ++ + +A Y F + KE+ F
Sbjct: 512 TGKAWFQGFNEVGVTVYGMSANDLVQIKNNDH--AQYKAIQYHAACNTYNFSCRAKEDEF 569
Query: 630 SDEQRVKSTVVKAERYNYSSETRFILDLM 658
+ +RV+ + + + +Y E ++ DL+
Sbjct: 570 NGVRRVRFGISRLAKVDYKEEAGYLRDLL 598
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 26 RFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNRMIVIVMDLDVI 85
R+R+++SDG Q MLATQ NELV + + +V + + TCN +Q + +++V++L V+
Sbjct: 54 RYRIIISDGVHFIQAMLATQLNELVQNNSIGKHTVAVVERATCNYVQEKRLIVVLELRVV 113
Query: 86 IDKCDPIGKPVPAQRPSSNE-QPGSVTGNPQSNAT 119
D IG P S SVT PQS AT
Sbjct: 114 AHLPDKIGDPQQLGPDSKRALDSASVTPAPQSVAT 148
>gi|295674419|ref|XP_002797755.1| replication factor-A protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280405|gb|EEH35971.1| replication factor-A protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 603
Score = 289 bits (740), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 159/448 (35%), Positives = 267/448 (59%), Gaps = 22/448 (4%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
+ I PI AL+PY KWTIKAR T K E++ ++N+ G+G++F +LLD D GEIR T F
Sbjct: 166 ANIYPIEALSPYSHKWTIKARCTNKSEIKTWHNKNGEGRLFSVNLLD-DSGEIRATAFKD 224
Query: 277 VADQFYHQVEAGKIYLVSR-GSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQ 335
D Y E G +Y +S ++ A+K F++L+N+ E+ + ++V+ E+ +P+
Sbjct: 225 QCDALYGVFEEGSVYYISSPCRVQIAKKAFSNLNNEYELTFEKDTVVEKA-EEQNDVPQI 283
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTET-QKRTLHLRDMSGRSVEL 394
+F+F I +++ +E + +D+IGV+ + ++ ++ K ++ KR L L D +G SV L
Sbjct: 284 RFNFTNIANLQTIEPGTTIDVIGVLKDVGESSQILSKTTSKPYDKRDLTLVDNTGYSVRL 343
Query: 395 TLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
T+WGN D DS ++A K +VSDF G+ + +S+ + ++PD +AH+
Sbjct: 344 TVWGNAAKD--------FDSMPESVVAFKGVKVSDFGGRSLSLLSSGSMTVDPDIEDAHK 395
Query: 455 LKEWFEKEGKNTQSVSISRDSLSVGRADIR----KTVSQIKDEGLGTKEKPDWITVSATI 510
LK W+E +G++ S S +VG D R KT++Q+++E LG EKPD+ ++ AT+
Sbjct: 396 LKGWYEAQGRSETFASHESISGAVGSGDRRANSFKTIAQVQEENLGMSEKPDYFSLKATV 455
Query: 511 VYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHT 570
VY+K D Y AC + D+ CNKKV+ + GRW C+RCDQS +YRYIL + DHT
Sbjct: 456 VYVKQDTMAYPAC---LTDK-CNKKVLQDETGRWRCERCDQSFPRPEYRYILSVNVCDHT 511
Query: 571 GLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFS 630
G W++ F E + ++G+SA ++ LK D ++ + E+V+ A + F + K ++F
Sbjct: 512 GALWLSCFDEVGKALLGISANEIMELK--DNDERAYEELVQKANCRAWNFNCRAKMDSFQ 569
Query: 631 DEQRVKSTVVKAERYNYSSETRFILDLM 658
++QRV+ V +Y++E+ + +L+
Sbjct: 570 EQQRVRYQVSSVSPIDYTTESVRLAELI 597
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 63/118 (53%), Gaps = 11/118 (9%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PV+Q + +K + Q + +RFR V SD + Q MLATQ N VTSG L G V
Sbjct: 27 PVVQCVQVKPL-----PPQPNSPERFRAVFSDITNYVQTMLATQANHFVTSGHLVRGCFV 81
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVI--IDKCD-PIGKPVP---AQRPSSNEQPGSVTGN 113
RL F N+++ + I+IV+DL+++ + C+ IG P P Q P +++ N
Sbjct: 82 RLKSFQANLVKGKRILIVLDLEILDRLGVCEKKIGDPQPLDMKQEEQDKSLPTTISTN 139
>gi|67900872|ref|XP_680692.1| hypothetical protein AN7423.2 [Aspergillus nidulans FGSC A4]
gi|40742813|gb|EAA62003.1| hypothetical protein AN7423.2 [Aspergillus nidulans FGSC A4]
Length = 606
Score = 289 bits (739), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 168/475 (35%), Positives = 268/475 (56%), Gaps = 24/475 (5%)
Query: 190 ARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNN 249
A+ AP S R + G + P+ I PI A++PY KWTIKAR T+K ++ ++
Sbjct: 146 AKAQNAPSQISSRAQHTRPMQGSA--PATIYPIEAISPYAHKWTIKARCTSKSPIKTFHG 203
Query: 250 QRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG-SLKPAQKNFNHL 308
+ GDG +F +LLD D GEIR T FN Y + G++Y +S ++ A+K F +L
Sbjct: 204 RSGDGTLFSVNLLD-DSGEIRATGFNEQCSALYDLFQEGEVYYISSPCRVQIAKKQFTNL 262
Query: 309 HNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTAS 368
+ND E+ + ++V+ E+ +P+ +F+F I D++ +E ++ +D+IGV+ + T
Sbjct: 263 NNDYELTFERDTLVEKA-EEQNDVPQVRFNFTTIGDLQSVEKDTTIDVIGVLKDVGETTQ 321
Query: 369 LMRKNGTET-QKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRV 427
++ K + KR L L D +G SV LT+WG + +S ++A K +V
Sbjct: 322 IVSKTTKKPYDKRELTLVDNTGFSVRLTIWGT----TAMNFAASPES----VVAFKGVKV 373
Query: 428 SDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQ--SVSISRDSLSVGRADIRK 485
SDF GK + +S+ + ++PD EAHRLK W++ +G+N S + S ++S + D K
Sbjct: 374 SDFGGKSLSLLSSGSVTVDPDIEEAHRLKGWYDAQGRNENFASHASSVGTMSATKRDQLK 433
Query: 486 TVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWH 545
T++Q+++E LG E+P + T+ AT+VYIK DN CY AC CNKKV G+W
Sbjct: 434 TIAQVREEQLGMSEEPSYFTLRATVVYIKQDNLCYPACL----SEGCNKKVTEVDPGQWR 489
Query: 546 CDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEK 605
C+RCD++ +YRYI+ + DHTG ++ F + ++GMSA L L QND K
Sbjct: 490 CERCDKTHPRAEYRYIMLVNVSDHTGQLYLNCFDDVGRLLLGMSANQLMELP---QNDGK 546
Query: 606 -FGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMD 659
G V++NAT + F + K + + D+QR++ V A+ NYS E + D++D
Sbjct: 547 ALGNVIQNATCRTWTFGCRAKIDHYGDQQRIRYQVSYAKPVNYSEEASRLADIID 601
Score = 73.6 bits (179), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 69/117 (58%), Gaps = 10/117 (8%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++Q + +K + Q + Q+R+R+V SD S Q MLA Q N VT GLL+ G V
Sbjct: 30 PIVQCVQVKPLPP-----QANNQERYRVVFSDISNYVQTMLAIQANHFVTDGLLRKGCFV 84
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVI--IDKCDPIGKPVPAQRPSSNE---QPGSVTGN 113
RL +F N ++ + I+IV+DL+V+ + + + +G+P P + + E QP +++ N
Sbjct: 85 RLKQFQANSVKGKKILIVLDLEVLKELGEAEKLGEPKPLESKAEEEEKPQPTTISSN 141
>gi|322698294|gb|EFY90065.1| replication factor-A protein 1 [Metarhizium acridum CQMa 102]
Length = 595
Score = 289 bits (739), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 168/476 (35%), Positives = 265/476 (55%), Gaps = 34/476 (7%)
Query: 198 MQSPSMYANRGLVGKSE-VPSR--------IIPIAALNPYMGKWTIKARVTAKGELRHYN 248
+ S Y N+ K + +PSR I PI L+P+ KWTIKARVT K +++ ++
Sbjct: 132 IASNDFYGNKKEESKPQSMPSRPAVHDGGNIYPIEGLSPFQHKWTIKARVTMKSDIKTWH 191
Query: 249 NQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSR-GSLKPAQKNFNH 307
G+GK+F +LLD + GEI+ T FN D FY ++ G +Y +S + A+K F++
Sbjct: 192 KPTGEGKLFSVNLLD-ESGEIKATGFNDQCDAFYDLLQEGSVYYISSPCRVNLAKKQFSN 250
Query: 308 LHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTA 367
L ND EI + + ++ ED ++P+ +F+F I +++ +E ++ VD+IGV+ + +
Sbjct: 251 LPNDYEITFERDTRIEKA-EDQTNVPQVRFNFCTIQELQNVEKDNTVDVIGVLKDVGEVS 309
Query: 368 SLMRKN-GTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGR 426
+ K+ G QKR L L D +G SV +T+WG N D+ ++A K +
Sbjct: 310 EITSKSSGKPFQKRELTLVDDTGYSVRVTVWGKTANS--------FDANPESVVAFKGTK 361
Query: 427 VSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVG----RAD 482
VSDF GK + +S+ + ++PD P+AHRLK W++ G+ T + + ++ S+G RA+
Sbjct: 362 VSDFGGKSLSLLSSGTMTVDPDIPDAHRLKGWYDSSGR-TDNFATHQNMASMGNAGGRAN 420
Query: 483 IRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDG 542
KT++Q+KDE LG + P + ++ ATIV++K D FCY AC CNKKV+ GDG
Sbjct: 421 ETKTIAQVKDENLGM-DAPAYYSIKATIVFVKQDTFCYPAC----SKEGCNKKVVETGDG 475
Query: 543 RWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQN 602
W+C++C S DYRYI+ + DHT W+ F E E I GM+A L LK + +
Sbjct: 476 -WYCEKCSVSHERPDYRYIVSLNVADHTSHQWLNCFNETGEAIFGMTANQLMELK--END 532
Query: 603 DEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLM 658
D KF K F+ + K + F D QRV+ V+ A ++ SE + +L+
Sbjct: 533 DAKFMAAFEAVNCKKLNFRCRAKMDNFGDTQRVRYQVISASFLDFKSEGNKLAELI 588
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 15/131 (11%)
Query: 25 QRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNRMIVIVMDLDV 84
+R+R+V+SDG Q MLATQ N ++ G L GS R+ ++ ++ + I++++DL+V
Sbjct: 47 ERYRLVMSDGDHYVQAMLATQANHVIHDGKLVRGSFARVKQYNPQNLKGKNILVILDLEV 106
Query: 85 I--IDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVP 142
I + + IG P + + EQ T S + N + P + P
Sbjct: 107 IESLGVQEKIGSPTAVETNEAKEQ------------TIASNDFYGNKKEESKPQSMPSRP 154
Query: 143 AARHVGSNLPP 153
A H G N+ P
Sbjct: 155 AV-HDGGNIYP 164
>gi|308811891|ref|XP_003083253.1| Single-stranded DNA-binding replication protein A (RPA), large (70
kD) subunit and related ssDNA-binding proteins (ISS)
[Ostreococcus tauri]
gi|116055132|emb|CAL57528.1| Single-stranded DNA-binding replication protein A (RPA), large (70
kD) subunit and related ssDNA-binding proteins (ISS)
[Ostreococcus tauri]
Length = 718
Score = 289 bits (739), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 185/618 (29%), Positives = 310/618 (50%), Gaps = 68/618 (11%)
Query: 204 YANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLD 263
Y G V ++E PS+I + LNPY +WT++AR+T + ELR Y+N +GDGKV F++LD
Sbjct: 89 YRQSGAVARNEAPSQIRTLNELNPYQNRWTVRARITGRLELRSYSNTKGDGKVLGFEILD 148
Query: 264 SDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQ 323
++G E++ F A +F +++ G++Y +S+ S+ A +N + + E+ D ++
Sbjct: 149 AEGTEMKCVGFGDAAVRFSNELHHGRVYEISKASIS-ASRNPKYAIHQYEMKFDQNTVFV 207
Query: 324 LCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLH 383
C + + SI + ++ F+ + D+ + D+IG+ ++ A++M+++G ET KR++
Sbjct: 208 ECPDAERSIEKVRYKFKKVADLATAMPGEMADVIGIAYHVGELATIMKRDGGETTKRSVM 267
Query: 384 LRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQL 443
+RD S ++E TLW + G +++ + SG P++AVK RV +F GK +GT+ +T +
Sbjct: 268 IRDNSDAAIEFTLWDPHSVELGGQIESLIASGEKPVIAVKNARVGEFQGKNMGTVGSTSV 327
Query: 444 FIEPDFPEAHRLKEWFEKEGKNTQ------------SVSISRDSLSVGRADIRKTVSQIK 491
I PD EA ++ WF++ G + Q S + LS+GR + Q+
Sbjct: 328 EINPDREEATEMRIWFDQGGADAQFTSLSGTGGGEGSGRSGGNVLSIGR------IVQLG 381
Query: 492 DEGLGTKEKP-DWITVSATIVYIKC--DNFCYTACPIMIGDRPCNKKVMNNGD-GRWHCD 547
DE + E ++ A I +IK + Y +CP+M G+R C KK+ D G W C+
Sbjct: 382 DELMAQGEGAVAYVNTCAMIKHIKPGQEGPFYASCPLMNGERQCMKKLRTVDDTGVWSCE 441
Query: 548 RCDQSVVE-CDYRYILQFQIQDHTGLTWVTAFQECAEEIM-GMSAKDLYSLKYVDQNDEK 605
R +E D+RY+ I DH+ WVT F E++M GM+A ++ + D+ ++
Sbjct: 442 RHSGEHIEAADWRYMFSCVIADHSAEQWVTVFGSEGEKVMSGMTAGEMRRM--FDEQPDE 499
Query: 606 FGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSGD 665
F + + F Y +LKV +T+ D R+K T+ + N+++ + +L+ + KL+ G+
Sbjct: 500 FEKFLVGRHFNMYQLRLKVAVDTYGDMPRIKCTLAEISPINFAAANKKLLEKIAKLELGE 559
Query: 666 STSFALKAENIIPKPEMTYTGTGNIGSRQTAPVVANYVGNNSNAGAASGLLANQMGQYGN 725
L +P +YT N+M + N
Sbjct: 560 DPE--LYEAPTKKRPSTSYTEAQE----------------------------NKMPSW-N 588
Query: 726 QYSGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATS 785
Q G R AG +C CG GH +MNCPS G G G + S
Sbjct: 589 QAGGER---AG------NCYKCGQTGHFAMNCPSAGGGAGNGGYNQGGGGGGGGIDKSNS 639
Query: 786 SECYKCHKTGHWARDCPS 803
+ C C TGHWARDCP+
Sbjct: 640 T-CRACGGTGHWARDCPN 656
>gi|448119751|ref|XP_004203808.1| Piso0_000828 [Millerozyma farinosa CBS 7064]
gi|359384676|emb|CCE78211.1| Piso0_000828 [Millerozyma farinosa CBS 7064]
Length = 629
Score = 289 bits (739), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 146/448 (32%), Positives = 256/448 (57%), Gaps = 28/448 (6%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQF 281
I L+PY WTIKARV+ KG++R ++N RG+GK+F+ + LD + EIR T FN +AD+F
Sbjct: 188 IEQLSPYQNHWTIKARVSYKGDIRKWSNARGEGKLFNVNFLD-ESDEIRATAFNDLADKF 246
Query: 282 YHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRP 341
Y Q+E GK+Y VS+ ++ ++ F+HL + E+ LD ++++ C+ D +++P+ F+F
Sbjct: 247 YQQLEEGKVYYVSKARIQQSKPQFSHLSHPYELALDRDTVIEECF-DTSNVPKIHFNFTK 305
Query: 342 INDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWG-- 398
+ND+E E NS+VD+IGV+ ++P + K+ G +R + + D S ++ + LW
Sbjct: 306 LNDIENAEANSIVDVIGVLKEVNPVFQITAKSTGKPFDRRNITIVDDSNVAITVGLWNTS 365
Query: 399 --NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
+F +G ++A K ++ DF G+ + + + PD PEA+ LK
Sbjct: 366 AVDFTVSEG------------SVIAFKGCKIQDFAGRSLTLTHAGSMMVNPDTPEAYSLK 413
Query: 457 EWFEKEGKNTQSVSISRDSLSVGRA-DIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKC 515
WF+ +G + S+ ++ + A RK++ Q ++E LG EKPD+ + ATI + K
Sbjct: 414 GWFDNKGVHENFKSLKNENSTTKNAFSSRKSILQAQEENLGMSEKPDFFNIKATINFFKT 473
Query: 516 DNFCYTACPIMIGD------RPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDH 569
+NFCY AC ++ CN+KV+ DG W C++CD + E YRYIL + D
Sbjct: 474 ENFCYPACNNVLDSGSQQLSNTCNRKVVEQSDGTWRCEKCDMNFAEPHYRYILNCSVMDS 533
Query: 570 TGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEK--FGEVVRNATFTKYLFKLKVKEE 627
+G W+T F + A+++ G A +L LK N E F +++ + T ++ F+LK +++
Sbjct: 534 SGQLWITLFDQEAQKLFGTPAGELLKLKEQQMNGENSDFQKIINDVTMKEFNFRLKARQD 593
Query: 628 TFSDEQRVKSTVVKAERYNYSSETRFIL 655
+++ RV+ V+ ++++E ++
Sbjct: 594 SYNGVLRVRYQVLSISDVDFNAECEHLI 621
>gi|226503005|ref|NP_001147118.1| replication protein A1 [Zea mays]
gi|195607412|gb|ACG25536.1| replication protein A 70 kDa DNA-binding subunit [Zea mays]
Length = 618
Score = 289 bits (739), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 168/455 (36%), Positives = 262/455 (57%), Gaps = 23/455 (5%)
Query: 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAV 277
R+ P+ LNPY G W IK RVT+KG LR Y N RG+G VF+ +L D DG +I+ T FN
Sbjct: 173 RVHPLITLNPYQGNWVIKVRVTSKGNLRTYRNARGEGCVFNVELTDEDGTQIQATMFNDA 232
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
A +FY E GK+Y VS+GSL+ A K F + ND E+ L+ ++V+ E + IP+ Q+
Sbjct: 233 AKKFYPIFELGKVYYVSKGSLRIANKQFKTVQNDYEMSLNENAIVEEA-EGETCIPQVQY 291
Query: 338 HFRPINDVEG-MENNSVVDLIGVVSYISPTASLMRKNGTET-QKRTLHLRDMSGRSVELT 395
+ I+ + + +VD+IGVV +SPT S+ RK ET KR + + D SG++V ++
Sbjct: 292 NLVKIDQLGSYVGGRELVDIIGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVSIS 351
Query: 396 LWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRL 455
LW + G L M DS P++A+K+ +VSDF G + T+ + L I PD EA L
Sbjct: 352 LWNDLTTTTGQELLDMADSS--PVVAIKSLKVSDFQGVSLSTVGKSTLAINPDLHEAQNL 409
Query: 456 KEWFEKEGKNTQSVSISRDSLSVGRA-------DIRKTVSQIKDEGLGTKEKPDWITVSA 508
K W++ EGK+T I + + RA R +S I + +EKP + ++ A
Sbjct: 410 KSWYDSEGKDTSLAPIGAE-MGAARAGGFKSTYSDRVFLSHITSDPAMGQEKPVFFSLYA 468
Query: 509 TIVYIKCD-NFCYTACPIMIGDRPCNKKVMNN-GDGRWHCDRCDQSVVECDYRYILQFQI 566
TI +IK D N Y AC + CNKKV G G W C+ C ++ EC RYI+ ++
Sbjct: 469 TISHIKPDQNMWYRAC------KTCNKKVTETFGSGYW-CEGCQKNDSECSLRYIMVIKV 521
Query: 567 QDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKE 626
D TG WV+ F E AE+I+G SA +L ++ ++ D+ + ++ AT+ +LF++ V +
Sbjct: 522 SDPTGEAWVSVFNEHAEKIIGCSADELDRIRK-EEGDDSYVLKLKEATWVPHLFRVSVTQ 580
Query: 627 ETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
+++E+R + TV +++E++++L+ + KL
Sbjct: 581 HEYNNEKRQRITVRSEAPVEHAAESKYLLEQIAKL 615
Score = 40.0 bits (92), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 17/122 (13%)
Query: 3 VLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVR 62
V+QV+DLK V + RF +DG + ML T V SG L+ ++R
Sbjct: 31 VVQVLDLKSVGTGS---------RFSFTATDGKDKIKAMLPTNFGSEVRSGNLKNLGLIR 81
Query: 63 LTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQR--PSSNEQPGSVTGNPQSNATG 120
+ +TCNV++ + D +++ KC+ + + + A+ + E+P V P+ G
Sbjct: 82 IIDYTCNVVKGK-----DDKVLVVIKCELVCQALDAEINGEAKKEEPPIVL-KPKDEWMG 135
Query: 121 VS 122
V+
Sbjct: 136 VT 137
>gi|46137213|ref|XP_390298.1| hypothetical protein FG10122.1 [Gibberella zeae PH-1]
Length = 607
Score = 289 bits (739), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 156/448 (34%), Positives = 260/448 (58%), Gaps = 24/448 (5%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
S I PI L+P+ KWTIKARVTAK +++ ++ G+GK+F +LLD + GEI+ T FN
Sbjct: 170 SNIYPIEGLSPFAHKWTIKARVTAKSDIKTWHKATGEGKLFSVNLLD-ESGEIKATGFND 228
Query: 277 VADQFYHQVEAGKIYLVSR-GSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQ 335
D Y Q++ G +Y +S ++ A+K F++L ND E+ + ++V+ ED ++P+
Sbjct: 229 QCDALYDQLQEGSVYYISTPCRVQLAKKQFSNLPNDYELTFERDTVVEKA-EDQTNVPQV 287
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVEL 394
+F+F I +++ +E ++ VD+IGV+ + + +K+G QKR L L D +G SV +
Sbjct: 288 RFNFCSIQELQSVEKDNTVDVIGVLKEVGEIGDITSKKDGRPFQKRELTLVDDTGFSVRV 347
Query: 395 TLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
T+WG N D+ ++A K +VSDF GK + +S+ + ++PD P+AHR
Sbjct: 348 TIWGKNANS--------FDAAPESVVAFKGTKVSDFGGKSLSLLSSGTMTVDPDIPDAHR 399
Query: 455 LKEWFEKEGKNTQSVSISRDSLSVGRADIRK----TVSQIKDEGLGTKEKPDWITVSATI 510
LK W++ G+ T + + ++ SVG A RK T++Q+KDE LG ++ + T+ ATI
Sbjct: 400 LKGWYDSAGR-TDTFATHQNMASVGSATGRKEDLKTIAQVKDENLGMDDQA-YYTIKATI 457
Query: 511 VYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHT 570
V++K +NFCY AC + CNKKV DG W C++C+ S + +YRY+L + DHT
Sbjct: 458 VFVKQENFCYAACL----SQGCNKKVTQMPDGTWQCEKCNLSHEKPEYRYVLSLNVADHT 513
Query: 571 GLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFS 630
W+T F + ++MG +A ++ LK + +D K A K+ F+ + K + F
Sbjct: 514 SHQWLTGFDDFGRQVMGRTADEMMELK--ENDDTKLTAAFEEANCKKFTFRCRAKMDNFG 571
Query: 631 DEQRVKSTVVKAERYNYSSETRFILDLM 658
+ QR++ V+ ++ SE + +L+
Sbjct: 572 EAQRIRYQVMSVTPLDFKSEGTKLAELI 599
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 14/157 (8%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
+PVLQ + +K + Q RFR+V+SDG Q MLATQ N +V L G
Sbjct: 28 VPVLQCLQVKQMAPSAQGGD-----RFRLVMSDGQHYVQTMLATQANHVVHDNKLVRGCF 82
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVI--IDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNA 118
R+ ++T N ++ + I++++D++VI + + IG+P + ++ G +
Sbjct: 83 ARIKQYTPNNLKGKNILVILDIEVIESLGIQEKIGEPSAFDAKPAGQESAIAGG----DF 138
Query: 119 TGVSLQHHNNTRVSQLPGDTDAVPA--ARHVGSNLPP 153
GV + + T+ Q ++P+ A H GSN+ P
Sbjct: 139 YGVK-KEESKTQPQQFQQQQQSMPSRPAMHAGSNIYP 174
>gi|408398028|gb|EKJ77164.1| hypothetical protein FPSE_02614 [Fusarium pseudograminearum CS3096]
Length = 607
Score = 289 bits (739), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 156/440 (35%), Positives = 256/440 (58%), Gaps = 24/440 (5%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
S I PI L+P+ KWTIKARVTAK +++ ++ G+GK+F +LLD + GEI+ T FN
Sbjct: 170 SNIYPIEGLSPFAHKWTIKARVTAKSDIKTWHKATGEGKLFSVNLLD-ESGEIKATGFND 228
Query: 277 VADQFYHQVEAGKIYLVSR-GSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQ 335
D Y Q++ G +Y +S ++ A+K F++L ND E+ + ++V+ ED ++P+
Sbjct: 229 QCDALYDQLQEGSVYYISTPCRVQLAKKQFSNLPNDYELTFERDTVVEKA-EDQTNVPQV 287
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVEL 394
+F+F I +++ +E ++ VD+IGV+ + + +K+G QKR L L D +G SV +
Sbjct: 288 RFNFCSIQELQSVEKDNTVDVIGVLKEVGEIGDITSKKDGRPFQKRELTLVDDTGFSVRV 347
Query: 395 TLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
T+WG N D+ ++A K +VSDF GK + +S+ + ++PD P+AHR
Sbjct: 348 TIWGKNANS--------FDAAPESVVAFKGTKVSDFGGKSLSLLSSGTMTVDPDIPDAHR 399
Query: 455 LKEWFEKEGKNTQSVSISRDSLSVGRADIRK----TVSQIKDEGLGTKEKPDWITVSATI 510
LK W++ G+ T + + ++ SVG A RK T++Q+KDE LG ++ + T+ ATI
Sbjct: 400 LKGWYDSAGR-TDTFATHQNMASVGSATGRKEDLKTIAQVKDENLGMDDQA-YYTIKATI 457
Query: 511 VYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHT 570
V++K +NFCY AC + CNKKV DG W C++C+ S + +YRYIL + DHT
Sbjct: 458 VFVKQENFCYAACL----SQGCNKKVTQMPDGTWQCEKCNLSHEKPEYRYILSLNVADHT 513
Query: 571 GLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFS 630
W+T F + ++MG +A ++ LK + +D K A K+ F+ + K + F
Sbjct: 514 SHQWLTGFDDFGRQVMGRTADEMMELK--ENDDTKLTAAFEEANCKKFTFRCRAKMDNFG 571
Query: 631 DEQRVKSTVVKAERYNYSSE 650
+ QR++ V+ ++ SE
Sbjct: 572 EAQRIRYQVMSVTPLDFKSE 591
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 16/158 (10%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
+PVLQ + +K + Q RFR+V+SDG Q MLATQ N +V L G
Sbjct: 28 VPVLQCLQVKQMAPSAQGGD-----RFRLVMSDGQHYVQTMLATQANHVVHDNKLVRGCF 82
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVI--IDKCDPIGKPVPAQ-RPSSNEQPGSVTGNPQSN 117
R+ ++T N ++ + I++++D++VI + + IG+P +P+ E ++ G
Sbjct: 83 ARIKQYTPNNLKGKNILVILDIEVIESLGIQEKIGEPSAFDAKPAGQE--SAIAGGDFYG 140
Query: 118 ATGVSLQHHNNTRVSQLPGDTDAVPA--ARHVGSNLPP 153
A + + T+ Q ++P+ A H GSN+ P
Sbjct: 141 AK----KEESKTQPQQFQEQQQSMPSRPAMHAGSNIYP 174
>gi|259483725|tpe|CBF79351.1| TPA: subunit of heterotrimeric Replication Factor (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 603
Score = 288 bits (738), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 168/475 (35%), Positives = 268/475 (56%), Gaps = 24/475 (5%)
Query: 190 ARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNN 249
A+ AP S R + G + P+ I PI A++PY KWTIKAR T+K ++ ++
Sbjct: 143 AKAQNAPSQISSRAQHTRPMQGSA--PATIYPIEAISPYAHKWTIKARCTSKSPIKTFHG 200
Query: 250 QRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG-SLKPAQKNFNHL 308
+ GDG +F +LLD D GEIR T FN Y + G++Y +S ++ A+K F +L
Sbjct: 201 RSGDGTLFSVNLLD-DSGEIRATGFNEQCSALYDLFQEGEVYYISSPCRVQIAKKQFTNL 259
Query: 309 HNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTAS 368
+ND E+ + ++V+ E+ +P+ +F+F I D++ +E ++ +D+IGV+ + T
Sbjct: 260 NNDYELTFERDTLVEKA-EEQNDVPQVRFNFTTIGDLQSVEKDTTIDVIGVLKDVGETTQ 318
Query: 369 LMRKNGTET-QKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRV 427
++ K + KR L L D +G SV LT+WG + +S ++A K +V
Sbjct: 319 IVSKTTKKPYDKRELTLVDNTGFSVRLTIWGT----TAMNFAASPES----VVAFKGVKV 370
Query: 428 SDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQ--SVSISRDSLSVGRADIRK 485
SDF GK + +S+ + ++PD EAHRLK W++ +G+N S + S ++S + D K
Sbjct: 371 SDFGGKSLSLLSSGSVTVDPDIEEAHRLKGWYDAQGRNENFASHASSVGTMSATKRDQLK 430
Query: 486 TVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWH 545
T++Q+++E LG E+P + T+ AT+VYIK DN CY AC CNKKV G+W
Sbjct: 431 TIAQVREEQLGMSEEPSYFTLRATVVYIKQDNLCYPACL----SEGCNKKVTEVDPGQWR 486
Query: 546 CDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEK 605
C+RCD++ +YRYI+ + DHTG ++ F + ++GMSA L L QND K
Sbjct: 487 CERCDKTHPRAEYRYIMLVNVSDHTGQLYLNCFDDVGRLLLGMSANQLMELP---QNDGK 543
Query: 606 -FGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMD 659
G V++NAT + F + K + + D+QR++ V A+ NYS E + D++D
Sbjct: 544 ALGNVIQNATCRTWTFGCRAKIDHYGDQQRIRYQVSYAKPVNYSEEASRLADIID 598
Score = 73.6 bits (179), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 69/117 (58%), Gaps = 10/117 (8%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++Q + +K + Q + Q+R+R+V SD S Q MLA Q N VT GLL+ G V
Sbjct: 27 PIVQCVQVKPLPP-----QANNQERYRVVFSDISNYVQTMLAIQANHFVTDGLLRKGCFV 81
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVI--IDKCDPIGKPVPAQRPSSNE---QPGSVTGN 113
RL +F N ++ + I+IV+DL+V+ + + + +G+P P + + E QP +++ N
Sbjct: 82 RLKQFQANSVKGKKILIVLDLEVLKELGEAEKLGEPKPLESKAEEEEKPQPTTISSN 138
>gi|400598555|gb|EJP66264.1| replication factor-a protein 1 [Beauveria bassiana ARSEF 2860]
Length = 597
Score = 288 bits (738), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 160/465 (34%), Positives = 265/465 (56%), Gaps = 34/465 (7%)
Query: 192 TPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQR 251
TPQ P+M+A + I PI L+P+ KWTIKARVT+K +++ ++
Sbjct: 146 TPQQSMPSRPAMHAG----------NNIYPIEGLSPFSHKWTIKARVTSKSDIKTWHKAT 195
Query: 252 GDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSR-GSLKPAQKNFNHLHN 310
G+GK+F +LLD + GEI+ T FN D FY ++ G +Y +S + A+K F++L N
Sbjct: 196 GEGKLFSVNLLD-ESGEIKATGFNDQCDAFYELLQEGSVYYISTPCRVNLAKKQFSNLPN 254
Query: 311 DLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLM 370
D E+ + ++++ ED ++P+ +F+F I +++ +E ++ VD+IGV+ + ++
Sbjct: 255 DYELAFERDTVIEKA-EDQTNVPQVRFNFSTIEELQSVEKDNTVDIIGVLKEAGEVSEIV 313
Query: 371 -RKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSD 429
+K G QKR L + D +G SV +T+WG + D+ ++A K +VSD
Sbjct: 314 SKKTGAPYQKRELTMVDDTGYSVRVTIWG--------KTASSFDAQPESVIAFKGTKVSD 365
Query: 430 FNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVS---ISRDSLSVGRADIRKT 486
F GK + +S+ + ++PD P+AHRLK W++ G+N + ++ + GR D KT
Sbjct: 366 FGGKSLSLLSSGTISVDPDIPDAHRLKGWYDSSGRNDTFATHQNLASVGAAAGRNDEIKT 425
Query: 487 VSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHC 546
++Q+K+E LG ++ + T+ ATIV++K DNFCY AC + CNKKV + GDG W C
Sbjct: 426 IAQVKEENLGVDDQA-YYTIKATIVFVKQDNFCYPACL----SQGCNKKVQDMGDGTWRC 480
Query: 547 DRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDE-K 605
++C+ S + +YRY+L F + DHT W++ F + I+GMSA +L LK +NDE K
Sbjct: 481 EKCNLSHDKPEYRYVLSFNVADHTSHQWLSCFDDSGRAIVGMSADELMELK---ENDEAK 537
Query: 606 FGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSE 650
F K F+ + + + + + QRV+ V+ A ++ SE
Sbjct: 538 FLAAFEAVNCKKLQFRCRARMDNYGEVQRVRYQVMTASFLDFKSE 582
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 23/157 (14%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
+PV+Q + +K + Q R+R+V+SDG Q MLATQ N +V L G +
Sbjct: 28 VPVMQCLQVKQMAPSAQGGD-----RYRLVMSDGQHYVQTMLATQANHVVHEDKLVRGCI 82
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVIIDK--CDPIGKPVPAQRPSSNEQPGSVTGNPQSNA 118
R+ ++T N ++ + I+I++D++VI + D IG+P + S ++ GN +
Sbjct: 83 ARIKQYTPNNLKGKNILIILDIEVIENYGILDKIGEPSAVE---SRAAETTIAGN---DF 136
Query: 119 TGVSLQHHNNTRVSQLPGDTDAVPA--ARHVGSNLPP 153
GV + + P ++P+ A H G+N+ P
Sbjct: 137 YGV--------KKEEKPTPQQSMPSRPAMHAGNNIYP 165
>gi|242765554|ref|XP_002340998.1| replication protein A 70 kDa DNA-binding subunit [Talaromyces
stipitatus ATCC 10500]
gi|218724194|gb|EED23611.1| replication protein A 70 kDa DNA-binding subunit [Talaromyces
stipitatus ATCC 10500]
Length = 586
Score = 288 bits (738), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 160/459 (34%), Positives = 265/459 (57%), Gaps = 23/459 (5%)
Query: 199 QSPSMYANRGL-VGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVF 257
++P+ Y +R + S + I PI A++PY KWTIKAR T+K ++ ++ +GK+F
Sbjct: 130 KAPTSYDSRNVRQASSSGHATIYPIEAISPYSHKWTIKARCTSKSAIKTWHRSNSEGKLF 189
Query: 258 HFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG-SLKPAQKNFNHLHNDLEIFL 316
+LLD D GEIR T FN D Y + G +Y +S ++ A+K F++L+ND E+
Sbjct: 190 SVNLLD-DSGEIRATGFNDQCDSLYDLFQEGSVYYISSPCRVQIAKKQFSNLNNDYELTF 248
Query: 317 DMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTE 376
+ ++V+ ED S+P+ +F+F I D++ +E ++ +D+IGV+ + PT+ + K +
Sbjct: 249 ERDTIVEKA-EDQDSVPQVRFNFTTIGDLQSVEKDTTIDVIGVLKEVGPTSQITSKTTNK 307
Query: 377 -TQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVV 435
KR L L D +G SV LT+WGN + D+ ++A K +VSDF G+ +
Sbjct: 308 PYDKRDLTLVDNTGFSVRLTVWGNLATN--------FDTLPESVVAFKGVKVSDFGGRSL 359
Query: 436 GTISTTQLFIEPDFPEAHRLKEWFEKEGKN---TQSVSISRDSL-SVGRADIRKTVSQIK 491
+S+ + ++PD EAHRLK W++ +G++ T S+S + G+ D KT++QI+
Sbjct: 360 SLLSSGTMTVDPDIEEAHRLKGWYDAQGRSDTFTSHASMSDGTTPGGGKLDQYKTIAQIR 419
Query: 492 DEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQ 551
+E LG E D+ ++ ATI+YIK DN Y ACP + CNKKV G+W C+RCD+
Sbjct: 420 EEQLGMSEAADFFSLKATIIYIKQDNVSYPACP----SQGCNKKVSELDPGQWRCERCDK 475
Query: 552 SVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVR 611
+ + +YRYI+ + DHTG W+ F E IMG +A +L +++ +N + E+ +
Sbjct: 476 TYPKPEYRYIMLINVSDHTGQLWLNCFDEVGRLIMGTTADELVNMEA--ENKYETSELFQ 533
Query: 612 NATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSE 650
A + F+ K K + + ++QR++ + A+ NYS E
Sbjct: 534 EANCQTWNFRCKAKMDHYGEQQRIRYQISSAKPVNYSDE 572
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 5/128 (3%)
Query: 20 QQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNRMIVIV 79
Q + Q+R+R V SD S Q M+ATQ N LV G+L+ G +VRL F N I+ + I+I+
Sbjct: 26 QPNGQERYRAVFSDISNYVQTMIATQANHLVKDGILRKGCLVRLKSFQSNAIKGKKILII 85
Query: 80 MDLDVI--IDKCDPIGKPVPAQRPSSNEQ---PGSVTGNPQSNATGVSLQHHNNTRVSQL 134
+DL+V+ + + + IG P P + + +E+ P V+GN A + N R +
Sbjct: 86 LDLEVLQHLGEYEKIGDPKPLETKAEDEEKATPTMVSGNGTYGAKAPTSYDSRNVRQASS 145
Query: 135 PGDTDAVP 142
G P
Sbjct: 146 SGHATIYP 153
>gi|225678017|gb|EEH16301.1| replication protein A 70 kDa DNA-binding subunit [Paracoccidioides
brasiliensis Pb03]
gi|226287502|gb|EEH43015.1| replication factor-A protein [Paracoccidioides brasiliensis Pb18]
Length = 603
Score = 288 bits (738), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 160/454 (35%), Positives = 266/454 (58%), Gaps = 22/454 (4%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
+ I PI AL+PY KWTIKAR T K E++ ++N+ G+G++F +LLD D GEIR T F
Sbjct: 166 ANIYPIEALSPYSHKWTIKARCTNKSEIKTWHNKNGEGRLFSVNLLD-DSGEIRATAFKD 224
Query: 277 VADQFYHQVEAGKIYLVSR-GSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQ 335
D Y E G +Y +S ++ A+K F +L+N+ E+ + ++V+ E+ +P+
Sbjct: 225 QCDALYGVFEEGSVYYISSPCRVQIAKKAFTNLNNEYELTFEKDTVVEKA-EEQNDVPQI 283
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTET-QKRTLHLRDMSGRSVEL 394
+F+F I +++ +E + +D+IGV+ + + ++ K ++ KR L L D +G SV L
Sbjct: 284 RFNFTNIANLQTIEPGTTIDVIGVLKDVGEASQILSKTTSKPYDKRDLTLVDNTGYSVRL 343
Query: 395 TLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
T+WGN D DS ++A K +VSDF G+ + +S+ + ++PD +AH+
Sbjct: 344 TVWGNAAKD--------FDSMPESVVAFKGVKVSDFGGRSLSLLSSGSMTVDPDIEDAHK 395
Query: 455 LKEWFEKEGKNTQSVSISRDSLSVGRADIR----KTVSQIKDEGLGTKEKPDWITVSATI 510
LK W+E +G++ S S +VG D R KT++Q+++E LG EKPD+ ++ AT+
Sbjct: 396 LKGWYEAQGRSETFASHESISGAVGAGDRRANSFKTIAQVQEENLGMSEKPDYFSLKATV 455
Query: 511 VYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHT 570
VY+K D Y AC + D+ CNKKV+ + GRW C+RCDQS +YRYIL + DHT
Sbjct: 456 VYVKQDTMAYPAC---LTDK-CNKKVLQDETGRWRCERCDQSFPRPEYRYILSVNVCDHT 511
Query: 571 GLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFS 630
G W++ F E + ++G+SA ++ LK D ++ E+V+ A + F + K ++F
Sbjct: 512 GALWLSCFDEVGKALLGISANEIMELK--DNDERAHEELVQKANCRAWNFNCRAKMDSFQ 569
Query: 631 DEQRVKSTVVKAERYNYSSETRFILDLMDKLKSG 664
++QRV+ V +Y++E+ + +L+ + G
Sbjct: 570 EQQRVRYQVSSVSPIDYTTESVRLAELIKSYQIG 603
Score = 65.9 bits (159), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 64/118 (54%), Gaps = 11/118 (9%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PV+Q + +K + Q + +RFR V SD S Q MLATQ N VTSG L G V
Sbjct: 27 PVVQCVQVKPL-----PPQPNSPERFRAVFSDISNYVQTMLATQANHYVTSGQLVRGCFV 81
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVI--IDKCD-PIGKPVP---AQRPSSNEQPGSVTGN 113
RL F N+++ + I+IV+DL+V+ + C+ IG+P P Q P +++ N
Sbjct: 82 RLKSFQANLVKGKRILIVLDLEVLDRLGVCEKKIGEPQPLDMKQEEQDKSLPTTISTN 139
>gi|322710190|gb|EFZ01765.1| replication factor-A protein 1 [Metarhizium anisopliae ARSEF 23]
Length = 595
Score = 288 bits (738), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 161/446 (36%), Positives = 255/446 (57%), Gaps = 25/446 (5%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI L+P+ KWTIKARVT K +++ ++ G+GK+F +LLD + GEI+ T FN
Sbjct: 162 IYPIEGLSPFQHKWTIKARVTMKSDIKTWHKPTGEGKLFSVNLLD-ESGEIKATGFNDQC 220
Query: 279 DQFYHQVEAGKIYLVSR-GSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
D FY ++ G +Y +S + A+K F++L ND EI + + ++ ED ++P+ +F
Sbjct: 221 DAFYDLLQEGSVYYISSPCRVNLAKKQFSNLPNDYEITFERDTRIEKA-EDQTNVPQVRF 279
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVELTL 396
+F I +++ +E ++ VD+IGV+ + + + K +G QKR L L D +G SV +T+
Sbjct: 280 NFCTIQELQNVEKDNTVDVIGVLKDVGEVSEITSKASGKPFQKRELTLVDDTGYSVRVTV 339
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
WG N D+ ++A K +VSDF GK + +S+ + ++PD P+AHRLK
Sbjct: 340 WGKTANS--------FDANPESVVAFKGTKVSDFGGKSLSLLSSGTMTVDPDIPDAHRLK 391
Query: 457 EWFEKEGKNTQSVSISRDSLSVG----RADIRKTVSQIKDEGLGTKEKPDWITVSATIVY 512
W++ G+ T + + ++ S+G RA+ KT++Q+K+E LG + P + ++ ATIV+
Sbjct: 392 GWYDSSGR-TDNFATHQNMASMGNAGGRANENKTIAQVKEENLGM-DAPAYYSIKATIVF 449
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
+K +NFCY AC CNKKV+ GDG W+C++C S DYRYI+ + DHT
Sbjct: 450 VKQENFCYPAC----SKEGCNKKVVETGDG-WYCEKCSVSHERPDYRYIVSLNVADHTSH 504
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
W+ F E E I GMSA L LK D +D KF K F+ + K + F D
Sbjct: 505 QWLNCFNETGEAIFGMSANQLMELK--DNDDAKFMAAFEAVNCKKLNFRCRAKMDNFGDT 562
Query: 633 QRVKSTVVKAERYNYSSETRFILDLM 658
QRV+ ++ A ++ SE + +L+
Sbjct: 563 QRVRYQIMSAAFLDFKSEGNKLAELI 588
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 25 QRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNRMIVIVMDLDV 84
+R+R+V+SDG Q MLATQ N ++ G L GS R+ ++ ++ + I++++DL+V
Sbjct: 47 ERYRLVMSDGDHYVQAMLATQANHVIHEGKLVRGSFARVKQYNPQNLKGKNILVILDLEV 106
Query: 85 I--IDKCDPIGKPVPAQRPSSNEQ 106
I + + IG P + + EQ
Sbjct: 107 IESLGVQEKIGSPTAVETNEAKEQ 130
>gi|367005983|ref|XP_003687723.1| hypothetical protein TPHA_0K01560 [Tetrapisispora phaffii CBS 4417]
gi|357526028|emb|CCE65289.1| hypothetical protein TPHA_0K01560 [Tetrapisispora phaffii CBS 4417]
Length = 616
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 148/442 (33%), Positives = 258/442 (58%), Gaps = 22/442 (4%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I I L+PY WTIKARV+ KG+++ ++NQ+G+GK+F+ + LD+ GEIR T FN +A
Sbjct: 181 ISAIEQLSPYQNIWTIKARVSFKGDIKTWHNQKGEGKLFNVNFLDT-SGEIRATAFNDMA 239
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
+F ++ GK+Y VS+ L+PA+ F++L + E+ +D ++++ C +D++++P+ F+
Sbjct: 240 TKFNEILQEGKVYYVSKARLQPAKPQFSNLSHPYELSMDRETIIEEC-KDESNVPKTHFN 298
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
F +N VE E NS +D++GV+ ++P L+ K G + +R + + D + S+ + LW
Sbjct: 299 FVKLNVVENQEANSTIDVLGVIQTVNPHFELVSKAGKKFDRRDITIVDDTSYSISVGLWN 358
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEW 458
D L G I+A+K RVSDF GK + ++ L P+ EA+ LK W
Sbjct: 359 QQATDFNL------PEG--SIVAIKGVRVSDFGGKSLSMGFSSTLIPNPEVQEAYALKGW 410
Query: 459 FEKEGKNTQSVSISRDSLSVGRADI------RKTVSQIKDEGLGTKEKPDWITVSATIVY 512
++ GKN+ S+ ++ +V ++ R T+++ + + LG EK D+ +V A+I +
Sbjct: 411 YDANGKNSNFTSLKQEGGAVSAQNLIKFISERTTIAKAQADNLGRSEKGDYFSVKASISF 470
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
+K DNF Y AC CNKKV+ N DG W C+RC+++ +YRY+L I D TG
Sbjct: 471 LKVDNFAYPAC----SSDDCNKKVLENPDGTWRCERCNKNQESPEYRYMLTISIIDETGQ 526
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
W+T F + A++++G+ A L L+ D + + F + ++ Y F+++ +E+ ++D+
Sbjct: 527 MWLTLFNDQAKQLLGVDANKLTELR--DTDADAFTKTTQDIQMNPYDFRIRAREDNYNDQ 584
Query: 633 QRVKSTVVKAERYNYSSETRFI 654
R++ TV NY E ++
Sbjct: 585 TRIRYTVSNLHNLNYKVEADYL 606
>gi|307184253|gb|EFN70726.1| Replication protein A 70 kDa DNA-binding subunit [Camponotus
floridanus]
Length = 607
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 166/446 (37%), Positives = 248/446 (55%), Gaps = 21/446 (4%)
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
IPIA L+PY +W IKARVT K ++ ++N RG+GK+F DL+D + GEIR FN D
Sbjct: 170 IPIAILSPYQNRWIIKARVTNKSAIKTWSNSRGEGKLFSMDLID-ESGEIRCVAFNQQCD 228
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
FYH ++ G +Y +SR LK A K F+ L ND E+ + +M+ C+++ +IP QQF F
Sbjct: 229 NFYHLIDVGNVYYISRCKLKTANKQFSTLKNDYEMTITDDTMISPCHKNCDNIPMQQFDF 288
Query: 340 RPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWG 398
PI+ VE E N+++D++GVV+ + + R G E KR ++L D SG + + LWG
Sbjct: 289 CPISQVESKEQNNLIDVLGVVTTFNDIQHITQRTTGKELIKRDINLIDDSGAMICVALWG 348
Query: 399 NFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFN-GKVVGTISTTQLFIEPDFPEAHRLK 456
D DG PILA+K RV +FN GK + I+++ L +PD PEAH+L+
Sbjct: 349 KEAEDFDGFN---------NPILAIKGARVGEFNGGKNLSLINSSVLKKDPDIPEAHKLR 399
Query: 457 EWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEK-PDWITVSATIVYIKC 515
+W+ +SR S + T ++ + LG K D V ATI I+
Sbjct: 400 KWYAAANHLENVKFLSRSSGGDFNTPLY-TFREMTEAQLGGKLNFTDLYKVVATINLIRV 458
Query: 516 DNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWV 575
+N Y ACPI C KK+++ G + C++C++ YR + I D TG WV
Sbjct: 459 ENSVYKACPI----DSCRKKLIDQSTGIFRCEKCNKDYPNFVYRLLANMNIADATGNRWV 514
Query: 576 TAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRV 635
AF E AE+I+G+SA++L LK D +D + E + A F +++F L+VK E F DE R+
Sbjct: 515 IAFNEVAEKILGISAQELGELKENDNDD--YMEKLNEANFKRFIFSLRVKSEVFQDEMRI 572
Query: 636 KSTVVKAERYNYSSETRFILDLMDKL 661
K T NY + +++D + K+
Sbjct: 573 KHTCTSVVPLNYKTHLTYLIDEVSKV 598
Score = 42.4 bits (98), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 10/89 (11%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQ-GMLATQRNELVTSGLLQIGSV 60
PVLQ++ K + S + R+R++LSDG R ML T N L+T+ L +V
Sbjct: 21 PVLQILGYKKIPS-----SINTDDRYRLLLSDGDRLNSFTMLVTHLNHLITNNSLTQYTV 75
Query: 61 VRLTKFTCNVIQN----RMIVIVMDLDVI 85
++ + + N R I++++D++V+
Sbjct: 76 CKILNYALTSVNNNGKERRIMLILDIEVL 104
>gi|50287931|ref|XP_446394.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525702|emb|CAG59321.1| unnamed protein product [Candida glabrata]
Length = 627
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 150/454 (33%), Positives = 262/454 (57%), Gaps = 30/454 (6%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I I L+PY WTIKARV+ KG+++ ++NQRG+GK+ + + LD+ GEIR T FN A
Sbjct: 190 IFAIEQLSPYQNVWTIKARVSYKGDIKTWHNQRGEGKLLNVNFLDT-SGEIRATAFNDNA 248
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
F ++ GK+Y VS+ L+PA+ F +L + E+ LD ++++ + D+ ++P+ F+
Sbjct: 249 TAFNEILQEGKVYYVSKARLQPAKPQFTNLSHPYELNLDRETVIEESF-DENNVPKTHFN 307
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
F +++++ ENNS VD++G++ ++P L + G + +R + + D SG ++ + LW
Sbjct: 308 FIKLDNIQSQENNSNVDVLGIIQTVNPHFELTSRAGKKFDRRDIQIVDDSGFAISVGLWN 367
Query: 399 NFCNDDGLRLQHMCDSGV--FPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
Q D + ++A+K RVSDF GK + + L P+ PEA++LK
Sbjct: 368 ----------QQALDFNLPEGSVVAIKGVRVSDFGGKSLSMGFNSTLIANPEIPEAYKLK 417
Query: 457 EWFEKEGKNTQSVSISRDSL--SVGRADIRKTVSQ------IKDEGLGTKEKPDWITVSA 508
W++++GK+ S+ +D+ + A++ K +SQ + E LG E+ D+ +V A
Sbjct: 418 GWYDQQGKDQDFTSLKQDAGAGTTSAANLAKFISQRITIARAEAENLGKNERGDFFSVKA 477
Query: 509 TIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQD 568
I ++K DNF Y AC + CNKKV+ DG W C++CD + +RYIL I D
Sbjct: 478 AISFMKVDNFAYPAC----SNENCNKKVIEQPDGTWRCEKCDINNPSPRWRYILTISIID 533
Query: 569 HTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQND-EKFGEVVRNATFTKYLFKLKVKEE 627
TG W+T F + A++++G+ A L SLK +ND ++F +N +Y F+++ +E+
Sbjct: 534 ETGNLWLTLFDDQAKQLLGVDANTLMSLK---ENDPDEFTRTTQNVQMNQYDFRIRARED 590
Query: 628 TFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
++D+ R++ TV + N+ +E ++ D + K+
Sbjct: 591 NYNDQTRIRYTVANLHKLNFKAEADYLADELTKV 624
>gi|346974864|gb|EGY18316.1| replication factor-A protein [Verticillium dahliae VdLs.17]
Length = 617
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 165/464 (35%), Positives = 254/464 (54%), Gaps = 23/464 (4%)
Query: 202 SMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDL 261
S +R + G S S I PI AL+PY KWTIKARVT K ++R ++ G+GK+F +L
Sbjct: 163 SQIPSRSVAGTSHGSSNIYPIEALSPYAHKWTIKARVTQKSDIRTWHKPSGEGKLFSVNL 222
Query: 262 LDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG-SLKPAQKNFNHLHNDLEIFLDMTS 320
LD + GEI+ T FN DQ+Y ++ G +Y +S + A+K F +L ND E+ + +
Sbjct: 223 LD-ESGEIKATGFNEQCDQYYDLLQEGSVYYISNPCKVGMAKKQFTNLPNDYELTFERDT 281
Query: 321 MVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQK 379
+++ ED ++P+ +++F I +++ +E ++ VD++GV+ + + ++ K+ G +K
Sbjct: 282 VIEKA-EDQTNVPQVRYNFCNIQELQSVEKDATVDVVGVLKDVGEVSQIVSKSTGKPYEK 340
Query: 380 RTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTIS 439
R L L D S SV +T+WG + D+ ++A K +VSDF G+ + +S
Sbjct: 341 RELTLVDDSNFSVRITIWG--------KSAQGFDASPESVVAFKGVKVSDFGGRSLSLLS 392
Query: 440 TTQLFIEPDFPEAHRLKEWFEKEGKN----TQSVSISRDSLSVGRADIRKTVSQIKDEGL 495
+ + ++PD P+AHRLK W + G+N T + S + GR + K + Q+KDE L
Sbjct: 393 SGTMSVDPDIPDAHRLKGWHDSSGRNDAFATHNSMGSGLGAATGRPNEDKVIVQVKDEQL 452
Query: 496 GTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVE 555
G EK D+ + ATIVYIK D F Y AC + CNKKV++ DG W CD+CD S
Sbjct: 453 GMGEKQDFFNLKATIVYIKQDTFAYPAC----RNEGCNKKVVDMNDGTWRCDKCDVSHDR 508
Query: 556 CDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDE-KFGEVVRNAT 614
+YRYI+ + DHT W++ F E IMGMSA L LK + DE A
Sbjct: 509 PEYRYIMSVNVCDHTSQLWLSCFDEVGRSIMGMSADQLMELK--EGGDEATLANAFEAAN 566
Query: 615 FTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLM 658
K F+ K +TF + QR++ A Y SE + +L+
Sbjct: 567 CKKLAFRCSAKMDTFGESQRIRYQARSAAPVEYKSEGNKLAELI 610
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 81/161 (50%), Gaps = 16/161 (9%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
+PVLQ + +K + QQ RFR+VLSD + Q M+ATQ N ++ G L +
Sbjct: 30 VPVLQCLQIKPLAG-----QQGAADRFRIVLSDINNYVQSMMATQVNHVIHDGHLVKNCL 84
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVIIDKCDP--IGKPVPAQRP---SSNEQPGSVTGNP- 114
VR+T++ N ++ + I+I++ L+VI + P IG P+ A P + PG+ P
Sbjct: 85 VRVTQYQPNSVKGKNILIILGLEVIPELGTPEKIGDPL-AFEPLPEGAAPNPGNTGNAPI 143
Query: 115 --QSNATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPP 153
Q+ + R+SQ+P + +V H SN+ P
Sbjct: 144 QGQNFYGAKKEEEKEKPRISQIP--SRSVAGTSHGSSNIYP 182
>gi|149676205|dbj|BAF64713.1| 70 kDa subunit of replication protein A [Ipomoea nil]
Length = 604
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 156/454 (34%), Positives = 259/454 (57%), Gaps = 19/454 (4%)
Query: 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAV 277
RI P+ +LNPY G WTIK RVT+KG +R Y N RG+G VF+ +L D DG EI+ T FN
Sbjct: 156 RIHPLVSLNPYQGIWTIKVRVTSKGNMRFYKNARGEGCVFNVELADQDGTEIQATMFNQA 215
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
A +FY + E GK+Y +S+G+L+ A K F + ND E+ L+ S V+ + A +P +F
Sbjct: 216 ARKFYDKFELGKVYYISKGTLRVANKQFKTVQNDYEMTLNENSEVEEAINEAAFVPETKF 275
Query: 338 HFRPINDVEGMEN-NSVVDLIGVVSYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVELT 395
+F I+++ N +VD+IGVV +S T S+ RK+ E KR + + D + ++V ++
Sbjct: 276 NFVAIDELGSYVNGRELVDVIGVVQNVSSTMSIRRKSNNEMIPKRDITIADETKKTVVVS 335
Query: 396 LWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRL 455
LW + + G L M D P++A+++ +V DF G + I+ + + + PD PEA +L
Sbjct: 336 LWSDLATNVGQELLDMADKS--PVVAIRSVKVGDFQGLSLSAITRSTVLVNPDMPEAKKL 393
Query: 456 KEWFEKEGKNTQSVSISRDSLSVGRADI------RKTVSQIKDEGLGTKEKPDWITVSAT 509
+ W++ EGK T S+ S + + R ++ I ++KP + ++ A
Sbjct: 394 RSWYDCEGKETSLTSVGSGLSSSAKGVLWSMYSDRVSLLHITSNPNLGEDKPVFFSIKAN 453
Query: 510 IVYIKCDN-FCYTACPIMIGDRPCNKKVMNN-GDGRWHCDRCDQSVVECDYRYILQFQIQ 567
I +IK + Y AC + CNKKV G G W C+ C ++ +C RYI+ ++
Sbjct: 454 ISFIKPEQAMWYRAC------KTCNKKVTEAIGSGYW-CEGCQKNDTDCSLRYIVAMRVS 506
Query: 568 DHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEE 627
D +G W++ F E AE+I+G SA +L L+ D + + ++ AT+ YLF++ V +
Sbjct: 507 DTSGEAWLSVFNEQAEKIIGCSADELDRLRSQDGDSSAYQMKLKEATWVPYLFRVSVTPQ 566
Query: 628 TFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
+++E+R + TV A ++++E+R+ L+ M K+
Sbjct: 567 EYNNEKRQRITVRAAAPVDFAAESRYFLEEMAKM 600
>gi|225557692|gb|EEH05977.1| replication factor [Ajellomyces capsulatus G186AR]
Length = 606
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 162/446 (36%), Positives = 261/446 (58%), Gaps = 23/446 (5%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI AL+PY KWTIKAR T K ++ ++N+ G+GK+F +LLD D GEIR T F
Sbjct: 172 IYPIEALSPYSHKWTIKARCTNKSAIKTWHNKNGEGKLFSVNLLD-DSGEIRATAFKDQC 230
Query: 279 DQFYHQVEAGKIYLVSR-GSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
D Y E G +Y +S ++ A+K FN+L+N+ E+ + ++V+ E+ +P+ +F
Sbjct: 231 DSLYGVFEEGCVYYISSPCRVQMAKKAFNNLNNEYELTFEKDTIVEKA-EEQNDVPQIRF 289
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVELTL 396
+F I +++ +E + +D+IGV+ + + ++ K ++ KR L L D +G SV LT+
Sbjct: 290 NFTNIANLQSVEAGTTIDVIGVLKDVGELSQILSKTTSKPYDKRDLTLVDNTGYSVRLTV 349
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
WGN + DS ++A K +VSDFNG+ + +S+ + ++PD +AH+LK
Sbjct: 350 WGNIAKE--------FDSVPESVVAFKGVKVSDFNGRSLSLLSSGSMTVDPDIEDAHKLK 401
Query: 457 EWFEKEGKNTQSVSISRDSLSVG---RADIRKTVSQIKDEGLGTKEKPDWITVSATIVYI 513
W++ +G++ S + + G RA KT+ Q+ + LG EKPD+ +V AT+VY+
Sbjct: 402 GWYDAQGRSETFASHDSMNNAAGFGDRASSFKTIVQVHEGNLGMSEKPDYFSVKATVVYV 461
Query: 514 KCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLT 573
K D Y AC + D+ CNKKV+ + +G+W C+RCDQS +YRYIL + DHTG
Sbjct: 462 KQDTMAYPAC---LTDK-CNKKVLQDENGQWRCERCDQSFPHPEYRYILSVNVCDHTGAL 517
Query: 574 WVTAFQECAEEIMGMSAKDLYSLKYVDQNDEK-FGEVVRNATFTKYLFKLKVKEETFSDE 632
W++ F E + I+G SA +L LK +NDE+ + E+V+ A + F + K + F D+
Sbjct: 518 WLSCFDEVGKIILGTSANELMELK---ENDERAYEELVQRANCRAWNFNCRAKMDNFQDQ 574
Query: 633 QRVKSTVVKAERYNYSSETRFILDLM 658
QRV+ V +YS E+ + +L+
Sbjct: 575 QRVRYQVSSVSAIDYSVESARLAELI 600
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 63/118 (53%), Gaps = 11/118 (9%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PV+Q + +K + Q + +RFR V SD + Q MLATQ N VTSG L G V
Sbjct: 27 PVVQCVQVKPL-----PPQPNSPERFRAVFSDITNYVQTMLATQANHYVTSGQLVRGCFV 81
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVI--IDKCD-PIGKPVP---AQRPSSNEQPGSVTGN 113
RL F N+++ + I+I++DL+V+ + C+ IG P P Q P +++ N
Sbjct: 82 RLKSFQANMVKGKRILIILDLEVLDRLGICEKKIGDPQPLDAKQEEQDKTIPTTISSN 139
>gi|115451537|ref|NP_001049369.1| Os03g0214100 [Oryza sativa Japonica Group]
gi|108706832|gb|ABF94627.1| replication factor-a protein 1 containing protein, expressed [Oryza
sativa Japonica Group]
gi|113547840|dbj|BAF11283.1| Os03g0214100 [Oryza sativa Japonica Group]
gi|125585388|gb|EAZ26052.1| hypothetical protein OsJ_09906 [Oryza sativa Japonica Group]
Length = 630
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 171/458 (37%), Positives = 266/458 (58%), Gaps = 29/458 (6%)
Query: 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAV 277
R+ P+ +LNPY G W IK RVT+KG LR Y N RG+G VF+ +L D DG +I+ T FN
Sbjct: 185 RVHPLISLNPYQGNWIIKVRVTSKGNLRTYKNARGEGCVFNVELTDVDGTQIQATMFNEA 244
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
A +FY E GK+Y +S+GSL+ A K F +HND E+ L+ ++V+ E + IP+ Q+
Sbjct: 245 AKKFYPMFELGKVYYISKGSLRVANKQFKTVHNDYEMTLNENAVVEEA-EGETFIPQIQY 303
Query: 338 HFRPIND----VEGMENNSVVDLIGVVSYISPTASLMRKNGTET-QKRTLHLRDMSGRSV 392
+F I+ V G E +VD+IGVV +SPT S+ RK ET KR + + D S ++V
Sbjct: 304 NFVKIDQLGPYVGGRE---LVDVIGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSSKTV 360
Query: 393 ELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEA 452
++LW + G L M DS PI+A+K+ +VSDF G + T+ + + + PD PEA
Sbjct: 361 TISLWNDLATTTGQELLDMVDSA--PIIAIKSLKVSDFQGLSLSTVGRSTIVVNPDLPEA 418
Query: 453 HRLKEWFEKEGKNTQSVSISRD--SLSVGRA----DIRKTVSQI-KDEGLGTKEKPDWIT 505
+L+ W++ EGK T SI D + VG A R +S I D LG ++KP + +
Sbjct: 419 EQLRAWYDSEGKGTSMASIGSDMGASRVGGARSMYSDRVFLSHITSDPNLG-QDKPVFFS 477
Query: 506 VSATIVYIKCD-NFCYTACPIMIGDRPCNKKVMNN-GDGRWHCDRCDQSVVECDYRYILQ 563
++A I IK D Y AC + CNKKV G G W C+ C ++ EC RYI+
Sbjct: 478 LNAYISLIKPDQTMWYRAC------KTCNKKVTEAIGSGYW-CEGCQKNDAECSLRYIMV 530
Query: 564 FQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLK 623
++ D TG W++ F + AE I+G SA +L ++ ++ D+ + ++ AT+ +LF++
Sbjct: 531 IKVSDPTGEAWLSLFNDQAERIVGCSADELDRIRK-EEGDDSYLLKLKEATWVPHLFRVS 589
Query: 624 VKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
V + + +E+R + TV ++++E +++L+ + KL
Sbjct: 590 VTQNEYMNEKRQRITVRSEAPVDHAAEAKYMLEEIAKL 627
>gi|171691865|ref|XP_001910857.1| hypothetical protein [Podospora anserina S mat+]
gi|170945881|emb|CAP72682.1| unnamed protein product [Podospora anserina S mat+]
Length = 630
Score = 286 bits (733), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 162/464 (34%), Positives = 270/464 (58%), Gaps = 33/464 (7%)
Query: 215 VPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCF 274
V S I PI AL+PY KWTIKAR+T K +++ ++ G+GK+F +LLD + EI+ T F
Sbjct: 181 VSSTIYPIEALSPYAHKWTIKARLTHKSDIKTWHKNNGEGKLFSVNLLD-ESSEIKATMF 239
Query: 275 NAVADQFYHQVEAGKIYLVSRG-SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIP 333
N DQFY ++ G++Y +S ++ A+K F++L ND E+ + ++V+ ED +S+P
Sbjct: 240 NDQVDQFYDVLQEGQVYYISAPCRVQLAKKQFSNLPNDYELTFERDTVVEKA-EDQSSVP 298
Query: 334 RQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTE-TQKRTLHLRDMSGRSV 392
+ +F+F I +++ +E ++ VD++GV+ + +S+ K+ + KR L L D +G SV
Sbjct: 299 QVRFNFCNIQELQSVEKDATVDVLGVLKTVHEVSSITSKSTQKPYDKRELELVDQTGYSV 358
Query: 393 ELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEA 452
+T+WG + + + ++A K RVSDFNG+ + +S+ + I+PD PEA
Sbjct: 359 RVTVWGKTATEFQGKPEE--------VIAFKGTRVSDFNGRSLSLLSSGTMAIDPDIPEA 410
Query: 453 HRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKT----VSQIKDEGLGTKEKPDWITVSA 508
H LK W++ G+++ + S S SVG A R + Q+K++ +G +KP++ +V A
Sbjct: 411 HALKGWYDSTGRHSDFATHSNMS-SVGAASGRTNEILMIQQVKEKDVGF-DKPEYFSVQA 468
Query: 509 TIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQD 568
TIV++K DNFCY AC CNKKV + GDG W C++CD + +YRYIL F D
Sbjct: 469 TIVHVKQDNFCYPACR----SEGCNKKVTDMGDGTWRCEKCDVTHDRPEYRYILNFNCSD 524
Query: 569 HTGLTWVTAFQECAEEIMGMSAKDLYSLKYV----DQNDE-------KFGEVVRNATFTK 617
HTG W++ F E +++G SA +L K + D +DE +F +A K
Sbjct: 525 HTGQIWLSCFDEQGRKLLGASADELMEWKQIKESGDASDEARKEAEVRFTTAFDSANCRK 584
Query: 618 YLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
F+ + K +T+ ++QRV+ +++A +Y E + +++ +L
Sbjct: 585 MTFRARAKMDTYGEQQRVRYQLMEATPLDYKMEGNRLAEMIRQL 628
>gi|2258469|gb|AAB71836.1| replication protein A1 [Oryza sativa Indica Group]
gi|125542895|gb|EAY89034.1| hypothetical protein OsI_10518 [Oryza sativa Indica Group]
Length = 630
Score = 286 bits (733), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 171/458 (37%), Positives = 266/458 (58%), Gaps = 29/458 (6%)
Query: 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAV 277
R+ P+ +LNPY G W IK RVT+KG LR Y N RG+G VF+ +L D DG +I+ T FN
Sbjct: 185 RVHPLISLNPYQGNWIIKVRVTSKGNLRTYKNARGEGCVFNVELTDVDGTQIQATMFNEA 244
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
A +FY E GK+Y +S+GSL+ A K F +HND E+ L+ ++V+ E + IP+ Q+
Sbjct: 245 AKKFYPMFELGKVYYISKGSLRVANKQFKTVHNDYEMTLNENAVVEEA-EGETFIPQIQY 303
Query: 338 HFRPIND----VEGMENNSVVDLIGVVSYISPTASLMRKNGTET-QKRTLHLRDMSGRSV 392
+F I+ V G E +VD+IGVV +SPT S+ RK ET KR + + D S ++V
Sbjct: 304 NFVKIDQLGPYVGGRE---LVDVIGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSSKTV 360
Query: 393 ELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEA 452
++LW + G L M DS PI+A+K+ +VSDF G + T+ + + + PD PEA
Sbjct: 361 TISLWNDLATTTGQELLDMVDSA--PIIAIKSLKVSDFQGLSLSTVGRSTIVVNPDLPEA 418
Query: 453 HRLKEWFEKEGKNTQSVSISRD--SLSVGRA----DIRKTVSQI-KDEGLGTKEKPDWIT 505
+L+ W++ EGK T SI D + VG A R +S I D LG ++KP + +
Sbjct: 419 EQLRAWYDSEGKGTSMASIGSDMGASRVGGARSMYSDRVFLSHITSDPNLG-QDKPVFFS 477
Query: 506 VSATIVYIKCD-NFCYTACPIMIGDRPCNKKVMNN-GDGRWHCDRCDQSVVECDYRYILQ 563
++A I IK D Y AC + CNKKV G G W C+ C ++ EC RYI+
Sbjct: 478 LNAYISLIKPDQTMWYRAC------KTCNKKVTEAMGSGYW-CEGCQKNDAECSLRYIMV 530
Query: 564 FQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLK 623
++ D TG W++ F + AE I+G SA +L ++ ++ D+ + ++ AT+ +LF++
Sbjct: 531 IKVSDPTGEAWLSLFNDQAERIVGCSADELDRIRK-EEGDDSYLLKLKEATWVPHLFRVS 589
Query: 624 VKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
V + + +E+R + TV ++++E +++L+ + KL
Sbjct: 590 VTQNEYMNEKRQRITVRSEAPVDHAAEAKYMLEEIAKL 627
>gi|156048933|ref|XP_001590433.1| hypothetical protein SS1G_08173 [Sclerotinia sclerotiorum 1980]
gi|154692572|gb|EDN92310.1| hypothetical protein SS1G_08173 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 609
Score = 286 bits (733), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 164/446 (36%), Positives = 258/446 (57%), Gaps = 22/446 (4%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI +L+PY KWTIKARVT+K ++R ++ Q +GK+F +LLD + GEI+ T FN
Sbjct: 174 IYPIESLSPYAHKWTIKARVTSKSDIRTWHKQNSEGKLFSVNLLD-ESGEIKATGFNEQC 232
Query: 279 DQFYHQVEAGKIYLV-SRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
D Y + G +Y + S ++ A+K F++++ND E+ + ++V+ ED ++P+ ++
Sbjct: 233 DALYELFQEGNVYYITSPCRVQIAKKQFSNINNDYELMFERDTLVEKA-EDQDNVPQVRY 291
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVELTL 396
+F I D++ +E +S VDLI V+ + T+ +M K + KR L L D +G SV LT+
Sbjct: 292 NFSNIGDLQTIEKDSTVDLIAVLKEVGETSEIMSKTTNKPYSKRELTLVDDTGYSVRLTV 351
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
WG + D+ I+A K +VSDF G+ + +S+ + +PD EAHRLK
Sbjct: 352 WG--------KTATSFDASPESIVAFKGVKVSDFGGRSLSLLSSGSMSFDPDIQEAHRLK 403
Query: 457 EWFEKEGKNTQSVS---ISRDSLSVGRADIRKTVSQIKDEGLG-TKEKPDWITVSATIVY 512
W++ +G+ S ++ + GR D KTV+QIKDEGLG ++E D+ + ATIVY
Sbjct: 404 GWYDSQGRTENFASHSNMASAGAAGGRQDPLKTVAQIKDEGLGMSEENTDYFSTRATIVY 463
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
IK + FCY +C + C+KKV+ DG W C++C+Q+ + +YRYIL + DHTG
Sbjct: 464 IKQETFCYPSCI----NENCSKKVVEENDGTWRCEKCNQTHPKPEYRYILSLNVNDHTGQ 519
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
W+TAF E IMGMSA ++ LK DQ+ + +A FK + K + F ++
Sbjct: 520 LWLTAFDEVGRLIMGMSADEMMELKENDQS--ALEKAFDDANCKMMTFKCRAKTDNFKEQ 577
Query: 633 QRVKSTVVKAERYNYSSETRFILDLM 658
RV+ V A NY ++ + +L+
Sbjct: 578 ARVRYQVNSASAVNYGADALKLAELI 603
Score = 42.7 bits (99), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 23 QQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNR 74
Q +RFR+V+SD Q MLATQ N ++ G L G +RL + N ++ +
Sbjct: 47 QAERFRLVVSDVQNFVQCMLATQANHVIHDGKLTKGCFIRLKNYQANEVKGK 98
>gi|325095428|gb|EGC48738.1| replication factor A 1 [Ajellomyces capsulatus H88]
Length = 602
Score = 286 bits (733), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 163/448 (36%), Positives = 262/448 (58%), Gaps = 27/448 (6%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI AL+PY KWTIKAR T K ++ ++N+ G+GK+F +LLD D GEIR T F
Sbjct: 168 IYPIEALSPYSHKWTIKARCTNKSAIKTWHNKNGEGKLFSVNLLD-DSGEIRATAFKDQC 226
Query: 279 DQFYHQVEAGKIYLVSR-GSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
D Y E G +Y +S ++ A+K FN+L+N+ E+ + ++V+ E+ +P+ +F
Sbjct: 227 DSLYGVFEEGCVYYISSPCRVQMAKKAFNNLNNEYELTFEKDTIVEKA-EEQNDVPQIRF 285
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVELTL 396
+F I +++ +E + +D+IGV+ + + ++ K ++ KR L L D +G SV LT+
Sbjct: 286 NFTNIANLQSVEAGTTIDVIGVLKDVGELSQILSKTTSKPYDKRDLTLVDNTGYSVRLTV 345
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
WGN + DS ++A K +VSDFNG+ + +S+ + ++PD +AH+LK
Sbjct: 346 WGNIAKE--------FDSVPESVVAFKGVKVSDFNGRSLSLLSSGSMTVDPDIEDAHKLK 397
Query: 457 EWFEKEGKNTQSVSISRDSLSVG-----RADIRKTVSQIKDEGLGTKEKPDWITVSATIV 511
W++ +G++ S DS++ RA KT+ Q+ + LG EKPD+ +V AT+V
Sbjct: 398 GWYDAQGRS--ETFASHDSMNNAAGFGDRASSFKTIVQVHEGNLGMSEKPDYFSVKATVV 455
Query: 512 YIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTG 571
Y+K D Y AC + D+ CNKKV+ + +G+W C+RCDQS +YRYIL + DHTG
Sbjct: 456 YVKQDTMAYPAC---LTDK-CNKKVLQDENGQWRCERCDQSFPHPEYRYILSVNVCDHTG 511
Query: 572 LTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEK-FGEVVRNATFTKYLFKLKVKEETFS 630
W++ F E + I+G SA +L LK +NDE+ + E+V+ A + F + K + F
Sbjct: 512 ALWLSCFDEVGKIILGTSANELMELK---ENDERAYEELVQRANCRAWNFNCRAKMDNFQ 568
Query: 631 DEQRVKSTVVKAERYNYSSETRFILDLM 658
D+QRV+ V +YS E+ + +L+
Sbjct: 569 DQQRVRYQVSSVSAIDYSVESARLAELI 596
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 11/118 (9%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PV+Q + +K + Q + +RFR V SD + Q ML TQ N VTSG L G V
Sbjct: 27 PVVQCVQVKPL-----PPQPNSPERFRAVFSDITNYVQTMLGTQANHYVTSGQLVRGCFV 81
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVI--IDKCD-PIGKPVP---AQRPSSNEQPGSVTGN 113
RL F N+I+ + I+I+ DL+V+ + C+ IG P P Q P +++ N
Sbjct: 82 RLKSFQANMIKGKRILIIFDLEVLDRLGICEKKIGDPQPLDTKQEEQDKTIPTTISSN 139
>gi|395333749|gb|EJF66126.1| replication factor-a protein [Dichomitus squalens LYAD-421 SS1]
Length = 601
Score = 286 bits (732), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 148/445 (33%), Positives = 259/445 (58%), Gaps = 23/445 (5%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
+ PI +L+PY WTIKARVT K ++R ++NQRG+GK+F L+D + GEIR T FNA
Sbjct: 168 VYPIESLSPYQTHWTIKARVTNKSDIRTWSNQRGEGKLFSVTLMD-ESGEIRATAFNAAV 226
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D+ Y +++ GK+YL+S+ + A+K F++++N+ E+ + ++ V+ C+ D +P +F+
Sbjct: 227 DELYDRLQDGKVYLISKAKVNLAKKKFSNVNNEYELTFERSTEVEECH-DATDVPTVKFN 285
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
F I+ ++ + +S D+IGVV +S +S+ K ++ KR L + D SG SV +TLWG
Sbjct: 286 FINISSLQDVAKDSTCDVIGVVKDVSELSSITSKATSKIPKRELTIVDRSGYSVRMTLWG 345
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEW 458
+ D P++A K +V DF G+ + +S++ + + PD PEAH L+ W
Sbjct: 346 --------KQAEQYDENDHPVIAFKGAKVGDFQGRSLSMMSSSTMHVNPDIPEAHALRGW 397
Query: 459 FEKEGKNTQSVS-----ISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYI 513
++ G + Q S +S ++ RA+IR ++ +K LG +KPD ATI++I
Sbjct: 398 YDAAGADQQFQSHTVTMVSGGGITFDRAEIR-NLNDVKVSELGMFDKPDNFCARATIMHI 456
Query: 514 KCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLT 573
K DN Y ACP C KKV+ G+ W C++CD+S + ++RY++ + D++G
Sbjct: 457 KSDNISYPACPTT----GCGKKVLQMGES-WRCEKCDKSFPKPEHRYMVAMAVSDYSGQA 511
Query: 574 WVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQ 633
W F + + + GM+A +L +K D+ + ++ V+ + + F + K++T++D+
Sbjct: 512 WFQGFNDVGQTVFGMTADELVEIK--DREELQYNTVINASIGKTFNFTCRAKQDTYNDQT 569
Query: 634 RVKSTVVKAERYNYSSETRFILDLM 658
RV+ + + NY E +++ DL+
Sbjct: 570 RVRYGISRILPLNYREEAKYLADLL 594
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%)
Query: 24 QQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNRMIVIVMDLD 83
Q R+R+++SDG Q MLATQ N +V + G++ + KF+ N++Q + ++I++ L
Sbjct: 48 QDRYRVIVSDGEHFLQSMLATQMNYIVEEDQIAKGTIATIEKFSVNLVQGKRLLIILALK 107
Query: 84 VIIDKCDPIGKPVPAQRPSSNEQPGSVTGNP 114
V++ + IG P Q + P S P
Sbjct: 108 VLVKHAEKIGSPKALQPRGEDGAPASAPVTP 138
>gi|224130162|ref|XP_002328669.1| predicted protein [Populus trichocarpa]
gi|222838845|gb|EEE77196.1| predicted protein [Populus trichocarpa]
Length = 603
Score = 286 bits (732), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 158/469 (33%), Positives = 267/469 (56%), Gaps = 20/469 (4%)
Query: 204 YANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLD 263
+ N + + R+ P+ +LNPY G WTIK RVT+KG +R Y N RG+G VF+ +L D
Sbjct: 142 HGNMAPAARMAMTRRVHPLVSLNPYQGNWTIKVRVTSKGNMRTYRNARGEGCVFNVELTD 201
Query: 264 SDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQ 323
DG +I+ T FN A +FY + E GK+Y +S+G+L+ A K F + ND E+ L+ S V+
Sbjct: 202 GDGTQIQATMFNEAAKKFYDRFELGKVYYISKGTLRVANKQFKTVQNDYEMTLNENSEVE 261
Query: 324 LCYEDDASIPRQQFHFRPINDVEGMENNS-VVDLIGVVSYISPTASLMRKNGTET-QKRT 381
++ A IP +F F PI+ + N+ +VD+IG+V +SPT S+ RK+ ET KR
Sbjct: 262 EASDEAACIPETKFKFVPIDQLGPYVNSKDLVDVIGIVQSVSPTTSIRRKSNNETVPKRD 321
Query: 382 LHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTT 441
+ + D + ++V ++LW G L + D P++A+K+ +V DF G + T+ +
Sbjct: 322 IVVADETKKTVVVSLWNELATSVGQELHDIADKS--PVVAIKSLKVGDFQGISLSTLGKS 379
Query: 442 QLFIEPDFPEAHRLKEWFEKEGKNTQSVSI------SRDSLSVGRADIRKTVSQIKDEGL 495
+ + P E+ +L+ W++ EGK T S+ S S + R ++S I
Sbjct: 380 IVQVNPVIAESEKLRNWYDSEGKETSMASVGSGLSPSTKSGARSMYSDRVSLSHITSNPS 439
Query: 496 GTKEKPDWITVSATIVYIKCD-NFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVV 554
++KP + ++ A I +IK D Y AC + CNKKV + G + C+ C ++
Sbjct: 440 LGEDKPAFFSIRAYISFIKPDQTMWYRAC------KTCNKKVTDALGGGYWCEGCQKNDA 493
Query: 555 ECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLK-YVDQNDEKFGEVVRNA 613
EC RYI+ ++ D +G WV+AF E AE+I+G SA +L LK +++N + + ++ A
Sbjct: 494 ECSLRYIMVVKVSDGSGEGWVSAFNEEAEKIIGCSADELDLLKSQIEEN--TYQQRLKEA 551
Query: 614 TFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLK 662
T+ +L ++ V + +++E+R + TV ++++E+RF+L+ + K+K
Sbjct: 552 TWNPHLLRISVSQNEYNNEKRQRMTVRAVAPVDFAAESRFLLEEISKMK 600
>gi|344230771|gb|EGV62656.1| hypothetical protein CANTEDRAFT_115222 [Candida tenuis ATCC 10573]
Length = 591
Score = 286 bits (732), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 147/446 (32%), Positives = 259/446 (58%), Gaps = 15/446 (3%)
Query: 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAV 277
RI I +L+PY W IKARV+ KG+LR ++N +G GK+F+ + LD D EIR T FN +
Sbjct: 154 RISSIESLSPYQNNWVIKARVSFKGDLRTWHNAKGSGKLFNVNFLD-DSDEIRATAFNEL 212
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
A++ Y ++ GK+Y +S+ ++ A+ F+ L + E+ LD ++V+ C+ ++ ++P+ +F
Sbjct: 213 AEKMYETLQEGKVYYISKARIQAAKPQFSRLSHPYELSLDRDTIVEECFSNNGNVPKLKF 272
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTL 396
+F +N ++ E N+V+D++GV+ + P + K+ G +R + + D S S+ + L
Sbjct: 273 NFTKLNQIQSAEPNTVIDVVGVLREVKPAFQITSKSTGKPFDRRDIDIVDDSNFSITVGL 332
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
W D L G ++A K ++ DF G+ + T + PD PEA++LK
Sbjct: 333 WNATAIDFNL------SEGT--VIAFKGCKIQDFGGRSLTLTQTGSILPNPDAPEAYQLK 384
Query: 457 EWFEKEGKNTQSVSISRDSL-SVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKC 515
W++ +G N ++ D+ S RKT++Q+K+E LG +E+PD+ +V ATI + K
Sbjct: 385 GWYDNQGSNETFQTLKADNAGSANYIKNRKTIAQVKEENLGAQEQPDFFSVKATINFFKT 444
Query: 516 DNFCYTAC--PIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLT 573
+ FCY AC + CN+K+++ GDG W C++CD + E YRYIL I D T
Sbjct: 445 ETFCYPACVNKQEASNNLCNRKIIDQGDGTWRCEKCDINYSEATYRYILNCSIMDATEQL 504
Query: 574 WVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQ 633
W T F + A +I G+SA +L LK + N+ +F +VV T ++ F+LK ++++++ E
Sbjct: 505 WATLFDQEASKIFGVSANELLVLK--ESNEAEFKKVVEAVTMKEFSFRLKARQDSYNGES 562
Query: 634 RVKSTVVKAERYNYSSETRFILDLMD 659
R++ + ++++E F++ ++
Sbjct: 563 RIRYQTMAVYDIDFAAECDFLVKELE 588
>gi|254565291|ref|XP_002489756.1| Subunit of heterotrimeric Replication Protein A (RPA) [Komagataella
pastoris GS115]
gi|238029552|emb|CAY67475.1| Subunit of heterotrimeric Replication Protein A (RPA) [Komagataella
pastoris GS115]
gi|328350171|emb|CCA36571.1| Replication protein A 70 kDa DNA-binding subunit [Komagataella
pastoris CBS 7435]
Length = 621
Score = 286 bits (732), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 145/454 (31%), Positives = 259/454 (57%), Gaps = 24/454 (5%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I I LNPY WTIKARV+ K ++R ++NQRG+G++F+ +LLD + EIR T FN VA
Sbjct: 180 IHAIDQLNPYQNNWTIKARVSYKSDMRKWSNQRGEGQLFNVNLLD-ETNEIRATAFNDVA 238
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D++Y ++ GK+Y +S+ ++PA+ F++L + E+ LD + + + ED + +P F+
Sbjct: 239 DKYYDLLQEGKVYYISKARIQPAKPQFSNLTHTYELALDRDTQI-IEAEDASDVPSLHFN 297
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLW 397
F +N V+ ++ N+++D+IGV+ ++P ++ K+ G +R + + D +G ++ + LW
Sbjct: 298 FVKLNKVQDLDANAIIDVIGVIKVVNPAFQIVAKSTGRPFDRRDIEVVDNTGFAITVGLW 357
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKE 457
N + D V ++A K +V DF G+ + + + PD PEA++LK
Sbjct: 358 NNTALE--------FDIPVGSVVAFKGAKVQDFGGRSLSLTQSATIITNPDSPEAYQLKA 409
Query: 458 WFEKEGKNTQSVSISRDSLSVG-----RADI--RKTVSQIKDEGLGTKEKPDWITVSATI 510
W++++G + Q ++ +S + DI RKT+ Q + E LG +KPD+ ++ A I
Sbjct: 410 WYDQQGGSNQEFKSLKNEVSSNSGLNTKQDIQSRKTILQAQSEELGKNDKPDYFSIKAYI 469
Query: 511 VYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHT 570
YI+ +NF Y AC CN+KV+ D W C++CD + + ++RYIL + DHT
Sbjct: 470 SYIRTENFSYPAC----ASEGCNRKVIQQSDDTWRCEKCDVNHPKPNHRYILTLSVVDHT 525
Query: 571 GLTWVTAFQECAEEIMGMSAKDLYSLKYVD--QNDEKFGEVVRNATFTKYLFKLKVKEET 628
G WVT F + A++++G SA +L LK D +N+ F +V ++ F++K ++
Sbjct: 526 GQLWVTLFDDQAQQLLGQSAGELIDLKENDMSENNHAFQQVFNRIQMKEFSFRVKASPDS 585
Query: 629 FSDEQRVKSTVVKAERYNYSSETRFILDLMDKLK 662
+ + R++ V + +++ E + D + +K
Sbjct: 586 YKGQTRIRYNAVSLAKLDFALEADALADYFEGVK 619
>gi|31580977|dbj|BAC77529.1| replication protein A 70b [Oryza sativa Japonica Group]
Length = 630
Score = 286 bits (731), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 171/458 (37%), Positives = 266/458 (58%), Gaps = 29/458 (6%)
Query: 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAV 277
R+ P+ +LNPY G W IK RVT+KG LR Y N RG+G VF+ +L D DG +I+ T FN
Sbjct: 185 RVHPLISLNPYQGNWIIKVRVTSKGNLRTYKNARGEGCVFNVELTDVDGTQIQATMFNEA 244
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
A +FY E GK+Y +S+GSL+ A K F +HND E+ L+ ++V+ E + IP+ Q+
Sbjct: 245 AKKFYPMFELGKVYYISKGSLRVADKQFKTVHNDYEMTLNENAVVEEA-EGETFIPQIQY 303
Query: 338 HFRPIND----VEGMENNSVVDLIGVVSYISPTASLMRKNGTET-QKRTLHLRDMSGRSV 392
+F I+ V G E +VD+IGVV +SPT S+ RK ET KR + + D S ++V
Sbjct: 304 NFVKIDQLGPYVGGRE---LVDVIGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSSKTV 360
Query: 393 ELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEA 452
++LW + G L M DS PI+A+K+ +VSDF G + T+ + + + PD PEA
Sbjct: 361 TISLWNDLATTTGQELLDMVDSA--PIIAIKSLKVSDFQGLSLSTVGRSTIVLNPDLPEA 418
Query: 453 HRLKEWFEKEGKNTQSVSISRD--SLSVGRA----DIRKTVSQI-KDEGLGTKEKPDWIT 505
+L+ W++ EGK T SI D + VG A R +S I D LG ++KP + +
Sbjct: 419 EQLRAWYDSEGKGTSMASIGSDMGASRVGGARSMYSDRVFLSHITSDPNLG-QDKPVFFS 477
Query: 506 VSATIVYIKCD-NFCYTACPIMIGDRPCNKKVMNN-GDGRWHCDRCDQSVVECDYRYILQ 563
++A I IK D Y AC + CNKKV G G W C+ C ++ EC RYI+
Sbjct: 478 LNAYISLIKPDQTMWYRAC------KTCNKKVTEAIGSGYW-CEGCQKNDAECSLRYIMV 530
Query: 564 FQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLK 623
++ D TG W++ F + AE I+G SA +L ++ ++ D+ + ++ AT+ +LF++
Sbjct: 531 IKVSDPTGEAWLSLFNDQAERIVGCSADELDRIRK-EEGDDSYLLKLKEATWVPHLFRVS 589
Query: 624 VKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
V + + +E+R + TV ++++E +++L+ + KL
Sbjct: 590 VTQNEYMNEKRQRITVRSEAPVDHAAEAKYMLEEIAKL 627
>gi|156843819|ref|XP_001644975.1| hypothetical protein Kpol_1025p37 [Vanderwaltozyma polyspora DSM
70294]
gi|156115629|gb|EDO17117.1| hypothetical protein Kpol_1025p37 [Vanderwaltozyma polyspora DSM
70294]
Length = 618
Score = 285 bits (730), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 154/469 (32%), Positives = 266/469 (56%), Gaps = 24/469 (5%)
Query: 199 QSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFH 258
QS S + S+ I I L+PY WTIKARV+ KGE++ ++NQ+G+GK+F
Sbjct: 163 QSNSTSHQNNTMSDSQKSRPIFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQKGEGKLFS 222
Query: 259 FDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDM 318
+ LD+ GEIR T FN +A +F ++ GK+Y VS+ L+PA+ F++L + E+ LD
Sbjct: 223 VNFLDT-SGEIRATAFNDMATKFNEVLQEGKVYYVSKARLQPAKPQFSNLSHPYELSLDR 281
Query: 319 TSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQ 378
++++ C +D++++P+ F F ++ ++ E +S VD++GV+ ++P L K G +
Sbjct: 282 ETVIEEC-QDESNVPKTHFSFIKLDAIQNQEASSTVDVLGVIQTVNPHFELTSKAGKKFD 340
Query: 379 KRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTI 438
+R + + D SG S+ + LW D L G I+A+K RVSDF GK +
Sbjct: 341 RRDITIVDDSGFSISVGLWNQQALDFNL------PEG--SIVAIKGVRVSDFGGKSLSMG 392
Query: 439 STTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRAD-------IRKTVSQIK 491
+ L P+ PEA+ LK W++ GKN S++++ +D R T+++ +
Sbjct: 393 FNSTLIPNPEIPEAYSLKGWYDTSGKNENFSSLNQEVGGAPSSDNLMKFISQRTTIAKAQ 452
Query: 492 DEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQ 551
+ LG EK D+ +V A++ ++K DNF Y AC + CNKKV+ + +G W C+RCD+
Sbjct: 453 SDNLGKSEKGDFFSVKASVSFLKVDNFAYPACT----NADCNKKVIEH-NGSWRCERCDK 507
Query: 552 SVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVR 611
+ + ++RY+L I D TG W+T F + A++++G+ A L LK D + + F + +
Sbjct: 508 TSEQPEWRYMLTISIMDETGQMWLTLFNDQAKQLLGIDANSLIELK--DSDPDAFSKKTQ 565
Query: 612 NATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDK 660
+ Y F+++ +E+ ++D+ R++ TV + NY E+ F+ + K
Sbjct: 566 SIQMNPYDFRIRAREDNYNDQTRIRYTVSNLHKLNYKVESDFLASELSK 614
>gi|297797049|ref|XP_002866409.1| hypothetical protein ARALYDRAFT_496254 [Arabidopsis lyrata subsp.
lyrata]
gi|297312244|gb|EFH42668.1| hypothetical protein ARALYDRAFT_496254 [Arabidopsis lyrata subsp.
lyrata]
Length = 631
Score = 285 bits (730), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 206/672 (30%), Positives = 326/672 (48%), Gaps = 82/672 (12%)
Query: 3 VLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVR 62
V+QV+DLK + R+ +DG + M + SG +Q ++R
Sbjct: 29 VVQVVDLKPI-----------GNRYTFSANDGKTRVKAMFTPTLTPEIISGKIQNLGLIR 77
Query: 63 LTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVS 122
L FT N I ++ + ++KC+ +G + S+ S + S+
Sbjct: 78 LIDFTVNDISSKSTKYFL-----VNKCEAVGSVL-----DSDINLESKSHAEASDPKKQK 127
Query: 123 LQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFS 182
L+H P + P N K +V G P+ EF
Sbjct: 128 LEHS---------------PVS-------PVNDVKTDVCTGITL---------KPKQEFV 156
Query: 183 RPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKG 242
AS + + M R R+ P+ +LNPY G WTIK RVT KG
Sbjct: 157 AKSASQIMSEQRGNAAPAARMAMTR----------RVHPLVSLNPYQGNWTIKVRVTNKG 206
Query: 243 ELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+R+Y N RG+G VF+ +L D +G +I+ T FN A +FY + + GK+Y +SRGSLK A
Sbjct: 207 VMRNYKNARGEGCVFNVELTDEEGTQIQATMFNDAARKFYDRFQLGKVYYISRGSLKLAN 266
Query: 303 KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENN--SVVDLIGVV 360
K F + ND E+ L+ S V+ ++ IP +F+F PI ++ G+ N ++DLIGVV
Sbjct: 267 KQFKTVQNDYEMTLNENSEVEEASSEEMFIPETKFNFVPIEEL-GLYVNQKELIDLIGVV 325
Query: 361 SYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPI 419
+SPT S+ R+ E KR + L D S ++V ++LW + G L M D P+
Sbjct: 326 QSVSPTMSIRRRTDNEMIPKRDITLADESKKTVVVSLWNDLATGIGQELLDMADKS--PV 383
Query: 420 LAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSI------SR 473
+A+K+ +V DF G + TIS + + I P+ PEA +LK WF+ EGK SI S
Sbjct: 384 VAIKSLKVGDFQGVSLSTISRSNVVINPESPEAKKLKSWFDSEGKEISMSSIGSGMSPSS 443
Query: 474 DSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCD-NFCYTACPIMIGDRPC 532
+ S R +S I +EKP + + A I +IK D Y AC + C
Sbjct: 444 KNGSRSMYTDRVLLSHITSNPSLGEEKPVFFSTRAYISFIKPDQTMWYQAC------KTC 497
Query: 533 NKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKD 592
NKKV D + C+ C + EC RYI+ ++ D +G TW+++F + AE+I+G SA D
Sbjct: 498 NKKVTEALDSGYWCEGCQKKYEECSLRYIMAVKVTDSSGETWISSFNDEAEKILGCSADD 557
Query: 593 LYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETR 652
L L+ ++ ++ AT++ ++F++ V + ++ E+R + TV ++++ETR
Sbjct: 558 LNKLRSEGGEVNEYQTKLKEATWSSHVFRVSVSQNEYNGEKRQRVTVKGVAPLDFAAETR 617
Query: 653 FIL-DLMDKLKS 663
+L D+ +K K+
Sbjct: 618 LLLQDISNKNKA 629
>gi|365990984|ref|XP_003672321.1| hypothetical protein NDAI_0J01860 [Naumovozyma dairenensis CBS 421]
gi|343771096|emb|CCD27078.1| hypothetical protein NDAI_0J01860 [Naumovozyma dairenensis CBS 421]
Length = 618
Score = 285 bits (729), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 149/445 (33%), Positives = 255/445 (57%), Gaps = 26/445 (5%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I I L+PY WTIKARV+ KGE++ ++NQRGDG +F+ + LD+ GEIR T FN A
Sbjct: 181 IFAIEQLSPYQNIWTIKARVSYKGEIKKWHNQRGDGSLFNVNFLDT-SGEIRATAFNENA 239
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
++F ++ GK+Y VS+ L+PA+ F +L + E+ LD ++++ C+++D ++P+ F+
Sbjct: 240 EKFSEILQEGKVYYVSKARLQPAKPQFTNLTHPYELNLDRDTVIEECFDED-NVPKTHFN 298
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
F ++ + ENN+ VD++GV+ ++P L + G +R + + D SG + + LW
Sbjct: 299 FIKLDAIPNQENNTNVDVLGVIQTVNPHFELTSRAGKRFDRRDISIVDESGFEISVGLWN 358
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEW 458
D L G ++A+K RVSDF GK + + L P+ PEA+ LK W
Sbjct: 359 QQAIDFNL------PEG--SVVAIKGVRVSDFGGKSLSMGFNSTLVPNPEIPEAYSLKGW 410
Query: 459 FEKEGKNTQSVSISRD--SLSVGRADIRKTVSQ------IKDEGLGTKEKPDWITVSATI 510
++ G+N S+ ++ S ++ A+ K +SQ + E LG EK D+ +V A I
Sbjct: 411 YDSTGRNGNFTSLKQEAGSNNISSANQEKFISQRITITRAQAENLGKSEKGDYFSVKAAI 470
Query: 511 VYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHT 570
++K DNF Y AC + CNKKV+ DG W C++C+ + +RY+L + D T
Sbjct: 471 SFLKVDNFAYPAC----SNENCNKKVIEQPDGTWRCEKCETNNEAPQWRYMLTISVMDET 526
Query: 571 GLTWVTAFQECAEEIMGMSAKDLYSLKYVDQND-EKFGEVVRNATFTKYLFKLKVKEETF 629
W+T F + AE+++ + A L +LK +ND E+F ++ ++ +Y F+++ +E+++
Sbjct: 527 NQLWLTLFNDQAEQLLDIDANKLIALK---ENDPEEFTKITQSIQMNQYDFRIRAREDSY 583
Query: 630 SDEQRVKSTVVKAERYNYSSETRFI 654
+D+ R++ TV + NY E ++
Sbjct: 584 NDQTRIRYTVANLHKLNYKGEADYL 608
>gi|449440852|ref|XP_004138198.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Cucumis sativus]
Length = 603
Score = 285 bits (729), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 168/459 (36%), Positives = 257/459 (55%), Gaps = 23/459 (5%)
Query: 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAV 277
R+ P+ LNPY+G WTIK RVT KG LR Y N +G+G VF+ L D DG +I+ T FN
Sbjct: 156 RVQPLVYLNPYLGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLTDEDGTQIQATMFNDA 215
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
A +FY + GK+Y VSRG+LK A K F + ND E+ L++ S V + A +P ++
Sbjct: 216 ARKFYEKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVSNEAAFVPETKY 275
Query: 338 HFRPINDVEGMENN--SVVDLIGVVSYISPTASLMRKNGTETQ-KRTLHLRDMSGRSVEL 394
+F I D+ G N +VD+IGVV +S T S+ RK ET KR + + D + ++V +
Sbjct: 276 NFVKI-DMLGPHVNGRDLVDVIGVVQNVSSTMSIRRKINNETAPKRDVTIADETKKTVVI 334
Query: 395 TLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
+LW + G L + D PI+A+K RV DF G + TIS + + I PD EAH
Sbjct: 335 SLWNDLATTVGQELLDIADQS--PIIALKYLRVGDFQGVSLSTISRSSITINPDIKEAHD 392
Query: 455 LKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQ-------IKDEGLGTKEKPDWITVS 507
L+ W++ EGK S+S ++ R S ++++ LG +EKP + ++
Sbjct: 393 LRSWYDSEGKAVSMSSVSSGLSPSTKSGSRSMYSDRISLSHILENKSLG-EEKPTFFSIR 451
Query: 508 ATIVYIKCD-NFCYTACPIMIGDRPCNKKVMNN-GDGRWHCDRCDQSVVECDYRYILQFQ 565
A + +IK D Y AC + CNKKV G G W CD C ++ EC RYI+ +
Sbjct: 452 AYVSFIKPDQTMWYRAC------KTCNKKVTEAIGSGYW-CDNCQKNDEECSLRYIMVVR 504
Query: 566 IQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVK 625
+ D +G WV+ F E AE IMG SA +L LK + + ++ AT+ +LF++ V
Sbjct: 505 VSDASGEAWVSTFNEEAERIMGCSADELDQLKSQIGEENSYQLKLKEATWVPHLFRVSVS 564
Query: 626 EETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSG 664
+ +++E+R + TV ++++E+RF+L+ + K+K+
Sbjct: 565 QNEYNNEKRQRITVRSVAPVDFAAESRFLLEEIAKMKAS 603
>gi|255954847|ref|XP_002568176.1| Pc21g11440 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589887|emb|CAP96041.1| Pc21g11440 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 609
Score = 285 bits (728), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 155/447 (34%), Positives = 260/447 (58%), Gaps = 22/447 (4%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI A++PY KWT+KAR T+K ++ ++N+ G+GK+F +LLD D GEIR T FN
Sbjct: 174 IYPIEAISPYSNKWTMKARCTSKSNIKTWHNKNGEGKLFSVNLLD-DSGEIRATGFNEQC 232
Query: 279 DQFYHQVEAGKIYLVSRG-SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
D Y + G +Y +S ++ A+K F +L+ND E+ + ++V+ E+ +P+ +F
Sbjct: 233 DMLYELFQEGSVYYISSPCRVQIAKKQFTNLNNDYELTFERDTIVEKA-EEQNDVPQIRF 291
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTL 396
+F + D++ +E ++ +D+IGV+ + T+ + K+ G KR L L D +G SV LT+
Sbjct: 292 NFTTVADLQTVEKDTTIDVIGVLKDVGETSQITSKSTGKPYDKRELTLVDNTGFSVRLTI 351
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
WG N+ + + ++A K +VSDF G+ + +S+ + ++PD EAHRL+
Sbjct: 352 WGASANNFSVAPES--------VVAFKGVKVSDFGGRSLSLLSSGSMTVDPDIGEAHRLR 403
Query: 457 EWFEKEGKN---TQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYI 513
W++ +G++ T S+S + S + D KTV+Q+++E LG E PD+ ++ AT+ YI
Sbjct: 404 GWYDAQGRSENFTSHASLSNATNSTAKMDRFKTVAQVREEQLGMSETPDYFSLKATVTYI 463
Query: 514 KCDN-FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
K D+ +CY AC CNKKV G+W C++CD++ + +YRY++ + DHTG
Sbjct: 464 KQDSTWCYPACL----SENCNKKVTELDPGQWRCEKCDKTHPKPEYRYVMPISVSDHTGQ 519
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
W++ F E IMG A +L L+ + + FGEV + A + F+ K + F D+
Sbjct: 520 LWLSCFDETGRNIMGKPADELMQLR--EDDPSAFGEVFQGANCQTWSFRCKANVDNFGDQ 577
Query: 633 QRVKSTVVKAERYNYSSETRFILDLMD 659
QRV+ V ++ NYS E + +++D
Sbjct: 578 QRVRYQVSSSQAINYSDEASRLANIID 604
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 71/118 (60%), Gaps = 11/118 (9%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQ-RNELVTSGLLQIGSV 60
P++Q + +K + + Q +Q +R+R V SD Q MLAT+ N +VT G L+ GS
Sbjct: 28 PIVQCVQIKALPA-----QPNQPERYRAVFSDIENYVQTMLATRMSNSVVTDGSLRKGSF 82
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVI--IDKCDPIGKPVPAQ-RPSSNE--QPGSVTGN 113
VRL F N ++ + I+I++DL+V+ + + D IG+P P + +P E QP +++GN
Sbjct: 83 VRLKSFQSNSVKGKKILIILDLEVLKELGEADKIGEPKPLEAKPEEGEVGQPTTISGN 140
>gi|389641383|ref|XP_003718324.1| replication factor-A protein 1 [Magnaporthe oryzae 70-15]
gi|351640877|gb|EHA48740.1| replication factor-A protein 1 [Magnaporthe oryzae 70-15]
gi|440466778|gb|ELQ36022.1| replication factor-A protein 1 [Magnaporthe oryzae Y34]
gi|440480262|gb|ELQ60936.1| replication factor-A protein 1 [Magnaporthe oryzae P131]
Length = 610
Score = 284 bits (727), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 156/447 (34%), Positives = 260/447 (58%), Gaps = 21/447 (4%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI +++PY KWTIKARV+ K ++R ++ G+GK+F +LLD + GEI+ T FN
Sbjct: 179 IYPIESISPYQHKWTIKARVSQKSDIRTWHKASGEGKLFSVNLLD-ETGEIKATGFNDQC 237
Query: 279 DQFYHQVEAGKIYLVSR-GSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
D+FY ++ G++Y +S ++ A+K F +L ND E+ + + ++ ED +S+P+ +F
Sbjct: 238 DKFYDILQEGQVYYISTPCRVQMAKKQFTNLPNDYELTFEDGTQIEKA-EDQSSVPQVRF 296
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVELTL 396
+F I +++ +E ++ VD+IGV+ ++ + K +G KR L L D SG SV +T+
Sbjct: 297 NFCNIQELQEVEKDATVDVIGVLKDVADVTQITSKASGKFFDKRELTLVDDSGYSVRMTI 356
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
WG + D+ ++A K +V DF G+ + +S+ + ++PD PEAHRLK
Sbjct: 357 WG--------KTAQNFDAKSESVVAFKGAKVGDFGGRSLSLLSSGTMTVDPDIPEAHRLK 408
Query: 457 EWFEKEGKNTQSVSISRDSLS--VGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIK 514
WF+ G+N + + +S++ GR D T+ ++K++ LG + + + AT+VYI+
Sbjct: 409 GWFDSSGRNDNFSTFNSNSVAGATGRQDQILTIHKVKEDNLGVDDVV-YFALKATVVYIR 467
Query: 515 CDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTW 574
+NF Y +C + C+KKV + GDG W C++CD + +YRYI+ + DHTG W
Sbjct: 468 QENFAYPSCL----NEGCSKKVTDLGDGSWRCEKCDVNHPRPEYRYIMSVNVNDHTGQLW 523
Query: 575 VTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQR 634
++ F + IMG SA +L +LK D+N E F NA K F+ + K +TF D QR
Sbjct: 524 LSCFDDVGRIIMGKSADELMALK--DENFEAFTREFENANCRKLSFRCRAKMDTFGDNQR 581
Query: 635 VKSTVVKAERYNYSSETRFILDLMDKL 661
V+ V+ A + ++ SE + DL+ +
Sbjct: 582 VRYQVMGATKMDWKSEAARLADLIKQF 608
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 65/115 (56%), Gaps = 5/115 (4%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
+PVLQ + +KL+ QQ +R+R+VLSD Q MLATQ N ++ LQ G +
Sbjct: 30 VPVLQCLQVKLL---GQQPNAGAAERYRVVLSDVDNYIQCMLATQANHVIHDDQLQRGCI 86
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVI--IDKCDPIGKPVPAQRPSSNEQPGSVTGN 113
VR+ + N ++ + +++++DL+VI + + IG+P + + N ++ G+
Sbjct: 87 VRVKSYQANTVKGKSVLVLLDLEVIQSLGVHEKIGEPASIEAKAENTTNTTIGGS 141
>gi|50302901|ref|XP_451388.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640519|emb|CAH02976.1| KLLA0A08844p [Kluyveromyces lactis]
Length = 621
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 156/470 (33%), Positives = 259/470 (55%), Gaps = 24/470 (5%)
Query: 192 TPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQR 251
T P Q S+ + G S+ I I ++PY WTIKARV+ KG+L+ + N R
Sbjct: 161 TSNIPAPQPRSVPKAKSNNGSSQNSRPIFAIEQISPYQNNWTIKARVSFKGDLKKWQNNR 220
Query: 252 GDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHND 311
G+G + + +LLDS GEIR T FN A +F ++ GK Y VS+ ++PA+ F++L +
Sbjct: 221 GEGHILNVNLLDS-SGEIRATAFNDNAIKFNEILQEGKAYFVSKARVQPAKPQFSNLKHP 279
Query: 312 LEIFLDMTSMVQLCYEDDAS-IPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLM 370
E+ L+ +V+ C +DA+ +P F+F +NDV +E N+ +D++G++ + P L
Sbjct: 280 YELSLERDCVVEECMNEDANDVPEMHFNFIKLNDVNNVEKNTAIDVVGILKSVGPHFELA 339
Query: 371 RKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDF 430
K+G + +R + + D SG + L LWG + ++ S ++A+K RV+DF
Sbjct: 340 AKSGKKFDRRDVEIVDDSGACISLGLWG----EQAIKFNLPEGS----VVALKGVRVTDF 391
Query: 431 NGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADI------R 484
NGK + +T+ LF PD EA+ LK W++ NT ++ +S G AD R
Sbjct: 392 NGKSLSMGNTSSLFANPDIQEAYTLKGWYDANASNTTFKALKTES--GGGADTSKFIADR 449
Query: 485 KTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRW 544
T+++ + LG EK D+ +V A + ++K DNF Y AC + C KKV+ DG W
Sbjct: 450 TTIARAIESNLGRSEKGDYFSVKAAVSFLKVDNFAYPACL----NEGCQKKVIMQSDGTW 505
Query: 545 HCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDE 604
C++CD + YRY+L I D TG W+T F + AE+++G+SA +L LK + N++
Sbjct: 506 RCEKCDMNHPHPKYRYMLTISIMDQTGQIWLTLFNDQAEQLVGVSANELTELK--ENNNQ 563
Query: 605 KFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFI 654
F + + +Y F+++ +E+ +++E R++ TV + +E F+
Sbjct: 564 AFVALTQKVQMNEYDFRIRAREDNYNNETRIRYTVANLHDLRWKAEADFL 613
>gi|219123923|ref|XP_002182265.1| replication protein a large 70 kD subunit [Phaeodactylum
tricornutum CCAP 1055/1]
gi|217406226|gb|EEC46166.1| replication protein a large 70 kD subunit [Phaeodactylum
tricornutum CCAP 1055/1]
Length = 606
Score = 284 bits (726), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 203/681 (29%), Positives = 334/681 (49%), Gaps = 107/681 (15%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P+LQV+D K V Q R+R+VLSDG QGMLATQ N ++ + L+ ++V
Sbjct: 12 PILQVLDTKQVPGPQGSV------RYRIVLSDGKHYIQGMLATQLNHMIATNLIGANTIV 65
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGV 121
++ +F N +++R ++I++++ + ++ IG P ++
Sbjct: 66 QVEQFMSNRVKDRTVIILLNVHALRNEPSRIGDPQDIEK--------------------- 104
Query: 122 SLQHHNNTRVSQLPGDTDAVPAARH-VGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPE 180
+Q+ A P + GS++PP V GS P P
Sbjct: 105 ----------AQI-----ATPGTNYATGSSVPP------VKTGS------------PNP- 130
Query: 181 FSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTA 240
Y + P+ SP ++ +V + + I I+ LN Y KWTI+ARVT+
Sbjct: 131 --------YGGPSRNPHHASPVRSSHAPIVRDTVNGTPITNISNLNMYANKWTIQARVTS 182
Query: 241 KGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKP 300
K ++R ++N +G+G +F +LLD ++R T F D+FY ++ G +Y S G LK
Sbjct: 183 KSDIRTWSNAKGEGSLFSVELLDQT-QDVRATFFKEAVDKFYSFLQIGSVYTFSGGRLKV 241
Query: 301 AQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMEN---NSVVDLI 357
A +N ++ EI D S + L DD +I RQ + F I+ + G+E N++VDL+
Sbjct: 242 ANAQYNTCQSNFEITFDQNSEIHLA-NDDGNIQRQHYEF--IDSIAGLERTEPNTMVDLL 298
Query: 358 GVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGV 416
VV + A+++ +K+G E K L L D S + LTLWG+ + D
Sbjct: 299 AVVQAVGEVATIVSKKSGQELTKCDLTLIDTSATQITLTLWGDKA------ASALTDYNQ 352
Query: 417 FPILAVKAGRVSDFNGK---VVGTISTTQLFIEPDFPEAHRLKEWFEKE----GKNTQSV 469
P++A++ RVSD+ G+ + G+I T PD P+ L+ W+ + G +S+
Sbjct: 353 QPVVAIRRARVSDYGGRSLSLSGSIET-----NPDIPQTAPLQTWWRTQTANGGVTGKSL 407
Query: 470 SISRDSLSVGRA-DIRKTVSQIKDEGLG-TKEKPDWITVSATIVYIKCDN---FCYTACP 524
S +R V + + R+T++ IK+ LG +KPDW+T AT+ ++K D Y AC
Sbjct: 408 SATRGGAGVMESLEQRQTIADIKNNNLGYAGDKPDWLTFKATVSFLKKDKEGGSWYPAC- 466
Query: 525 IMIGDRPCNK--KVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECA 582
PC KV DG W+CD+C S C R+I ++D T TWV+ F E A
Sbjct: 467 -ANAGEPCKNRYKVTQTTDGNWYCDKCQGSFPTCVRRWIFSGVVEDDTSSTWVSFFNEQA 525
Query: 583 EEIM-GMSAKDLYS-LKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVV 640
E ++ G +A +Y+ Q+ + + A T+++FK KVK E ++E RVK++VV
Sbjct: 526 ETLLAGATADQVYAETYQDQQDQDAYDSYFAKANHTEWIFKCKVKNEMVNEESRVKTSVV 585
Query: 641 KAERYNYSSETRFILDLMDKL 661
+ +++ E+R +L + K
Sbjct: 586 AMQPVDFAKESRDLLSALAKF 606
>gi|212528756|ref|XP_002144535.1| replication protein A 70 kDa DNA-binding subunit [Talaromyces
marneffei ATCC 18224]
gi|210073933|gb|EEA28020.1| replication protein A 70 kDa DNA-binding subunit [Talaromyces
marneffei ATCC 18224]
Length = 601
Score = 284 bits (726), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 156/446 (34%), Positives = 256/446 (57%), Gaps = 22/446 (4%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI A++PY KWTIKAR T+K ++ ++ +GK+F +LLD D GEI+ T FN
Sbjct: 166 IYPIEAISPYSHKWTIKARCTSKSAIKTWHRSNSEGKLFSVNLLD-DSGEIKATGFNDQC 224
Query: 279 DQFYHQVEAGKIYLVSRG-SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
D Y + G +Y +S ++ A+K F++L+ND E+ + ++V+ ED S+P+ +F
Sbjct: 225 DLLYDIFQEGSVYYISSPCRVQIAKKQFSNLNNDYELTFEKDTIVEKA-EDQDSVPQVRF 283
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVELTL 396
+F I D++ +E ++ +D+IGV+ + T+ + K + KR L L D +G SV LT+
Sbjct: 284 NFTTIGDLQSVEKDTTIDVIGVLKEVGQTSQITSKTTNKPYDKRDLTLVDNTGFSVRLTV 343
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
WGN + + +S ++A K +VSDF G+ + +S+ ++PD EAHRLK
Sbjct: 344 WGNLATN----FNTLPES----VVAFKGVKVSDFGGRSLSLLSSGTFTVDPDIEEAHRLK 395
Query: 457 EWFEKEGKNTQSVSISRDSLSV----GRADIRKTVSQIKDEGLGTKEKPDWITVSATIVY 512
W++ +G++ S + S V G+ D KT++QI++E LG E D+ ++ ATI+Y
Sbjct: 396 GWYDAQGRSDTFASHASMSDGVTSGGGKLDQYKTIAQIREEQLGMSEAADFFSLKATIIY 455
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
IK DN Y ACP + CNKKV G+W C+RCD++ + +YRYI+ + DHTG
Sbjct: 456 IKQDNVSYPACP----SQDCNKKVSELDPGQWRCERCDKTYPKPEYRYIMLINVSDHTGQ 511
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
W+ F E IMG +A DL +++ +N + E+ + A + F+ K K + + ++
Sbjct: 512 LWLNCFDEVGRLIMGTTADDLVNMEA--ENKYESSELFQEANCQTWNFRCKAKMDHYGEQ 569
Query: 633 QRVKSTVVKAERYNYSSETRFILDLM 658
QR++ + A NYS E + +L+
Sbjct: 570 QRIRYQISSARPVNYSDEATRLANLI 595
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 69/117 (58%), Gaps = 10/117 (8%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++Q + +K + Q + Q+R+R V SD S Q M+ATQ N LV G+L+ G +V
Sbjct: 28 PIVQCVQIKPLAP-----QPNGQERYRAVFSDISNYVQTMIATQANHLVKDGILRKGCLV 82
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVI--IDKCDPIGKPVPAQRPSSNEQ---PGSVTGN 113
RL F N I+ + I+I++DL+V+ + + + IG P P + + +E+ P ++GN
Sbjct: 83 RLKSFQSNAIKGKKILIILDLEVLQHLGEYEKIGDPKPLETKAEDEEKTTPTMISGN 139
>gi|449525283|ref|XP_004169647.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Cucumis sativus]
Length = 560
Score = 284 bits (726), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 168/459 (36%), Positives = 257/459 (55%), Gaps = 23/459 (5%)
Query: 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAV 277
R+ P+ LNPY+G WTIK RVT KG LR Y N +G+G VF+ L D DG +I+ T FN
Sbjct: 113 RVQPLVYLNPYLGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLTDEDGTQIQATMFNDA 172
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
A +FY + GK+Y VSRG+LK A K F + ND E+ L++ S V + A +P ++
Sbjct: 173 ARKFYEKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVSNEAAFVPETKY 232
Query: 338 HFRPINDVEGMENN--SVVDLIGVVSYISPTASLMRKNGTETQ-KRTLHLRDMSGRSVEL 394
+F I D+ G N +VD+IGVV +S T S+ RK ET KR + + D + ++V +
Sbjct: 233 NFVKI-DMLGPHVNGRDLVDVIGVVQNVSSTMSIRRKINNETAPKRDVTIADETKKTVVI 291
Query: 395 TLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
+LW + G L + D PI+A+K RV DF G + TIS + + I PD EAH
Sbjct: 292 SLWNDLATTVGQELLDIADQS--PIIALKYLRVGDFQGVSLSTISRSSITINPDIKEAHD 349
Query: 455 LKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQ-------IKDEGLGTKEKPDWITVS 507
L+ W++ EGK S+S ++ R S ++++ LG +EKP + ++
Sbjct: 350 LRSWYDSEGKAVSMSSVSSGLSPSTKSGSRSMYSDRISLSHILENKSLG-EEKPTFFSIR 408
Query: 508 ATIVYIKCD-NFCYTACPIMIGDRPCNKKVMNN-GDGRWHCDRCDQSVVECDYRYILQFQ 565
A + +IK D Y AC + CNKKV G G W CD C ++ EC RYI+ +
Sbjct: 409 AYVSFIKPDQTMWYRAC------KTCNKKVTEAIGSGYW-CDNCQKNDEECSLRYIMVVR 461
Query: 566 IQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVK 625
+ D +G WV+ F E AE IMG SA +L LK + + ++ AT+ +LF++ V
Sbjct: 462 VSDASGEAWVSTFNEEAERIMGCSADELDQLKSQIGEENSYQLKLKEATWVPHLFRVSVS 521
Query: 626 EETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSG 664
+ +++E+R + TV ++++E+RF+L+ + K+K+
Sbjct: 522 QNEYNNEKRQRITVRSVAPVDFAAESRFLLEEIAKMKAS 560
>gi|409045840|gb|EKM55320.1| hypothetical protein PHACADRAFT_255854 [Phanerochaete carnosa
HHB-10118-sp]
Length = 540
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 155/443 (34%), Positives = 245/443 (55%), Gaps = 22/443 (4%)
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
PI L+PY WTI+ +VT K ++R Y+N RGDGK+F L+D D GEI+ T FN D
Sbjct: 110 FPIEGLSPYQNNWTIRVKVTQKSDIRQYSNARGDGKLFSAVLMD-DTGEIKATAFNNNVD 168
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
+FY ++E GKIY +S+G + A+K FN+++N+ E+ L ++++ C D + + F
Sbjct: 169 EFYPKLEEGKIYYISKGQVSLAKKKFNNVNNEYELGLQRGTIIEECR--DGPVLNIHYKF 226
Query: 340 RPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGN 399
P++ + +D++G+V +S L + G + KR L + D SG SV LTLWG
Sbjct: 227 IPLDQLMNTNPGDTIDVLGIVKEMSDVTHLTSRQGNDLTKRELTIVDRSGASVRLTLWGK 286
Query: 400 FCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWF 459
+ C+SG PI+A K+ +V DF G+ + +S++ + I PD P+AH L+ W+
Sbjct: 287 -------QADRYCESGE-PIIAWKSVKVGDFGGRSLSMLSSSSMEINPDIPDAHVLRGWY 338
Query: 460 EKEGK----NTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKC 515
+ +GK Q+ S R S D + + ++ LG +KPD+ + ATI++IK
Sbjct: 339 DTDGKVQDFQPQTSSAPRGSGGAFNRDEIRLLDDVRSANLGGGDKPDFFSAHATIMHIKS 398
Query: 516 DNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWV 575
DN Y AC ++ CNKKV+ DG W C++CD+ YRYI+ + DH+G W
Sbjct: 399 DNIAYPACQ----NQGCNKKVIEQHDG-WRCEKCDKVFERPSYRYIMAMAVADHSGQVWF 453
Query: 576 TAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRV 635
F E I M+A L LK D++D ++ +V+ +A T Y F + K E+F + RV
Sbjct: 454 QCFNEAGVVIFDMTADQLVELK--DRDDAQYNKVLESAVGTTYNFTCRAKMESFQENNRV 511
Query: 636 KSTVVKAERYNYSSETRFILDLM 658
+ V K +Y E +++ L+
Sbjct: 512 RYGVQKILPLDYKEEGNYLMKLL 534
>gi|241950583|ref|XP_002418014.1| replication factor-A protein 1, putative [Candida dubliniensis
CD36]
gi|223641353|emb|CAX43313.1| replication factor-A protein 1, putative [Candida dubliniensis
CD36]
Length = 623
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 178/670 (26%), Positives = 333/670 (49%), Gaps = 87/670 (12%)
Query: 3 VLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVR 62
+LQ+ ++K V + ++FR++L+DG S G++ NE + + Q ++V+
Sbjct: 28 ILQITNIKAV------DLPNDVKKFRILLNDGEYSTHGLIDESCNEYIKNNNCQRYAIVQ 81
Query: 63 LTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVS 122
+ F+ Q VI + +V+ P +++ +N P N ++
Sbjct: 82 VNAFSIFATQKHFFVI-KNFEVL--------SPT-SEKSHNNFIPVDTYFNEHPEEAHLT 131
Query: 123 LQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFS 182
L ++ + P P A+ S FK +VG+G + S
Sbjct: 132 LTKKPDSLERESPAPGVTPPLAQSTNS------FKSDVGSGVPAQSK------------- 172
Query: 183 RPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKG 242
P P+ ++ PI ++PY WTIKARV+ KG
Sbjct: 173 ----------PPGPH-------------------RKVSPIETISPYQNNWTIKARVSYKG 203
Query: 243 ELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+LR ++N +G+GKVF F+LLD + EI+ + FN A++ + +E GK+Y +S+ + A+
Sbjct: 204 DLRTWSNSKGEGKVFGFNLLD-ESDEIKASAFNETAEKAHKLLEEGKVYYISKARVAAAR 262
Query: 303 KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSY 362
K FN L + E+ D + + C+ D++ +P+ F+F ++ ++ +E NS++D++G +
Sbjct: 263 KKFNTLSHPYELTFDKDTEITECF-DESDVPKLNFNFVKLDQIQNLEANSIIDVLGALKT 321
Query: 363 ISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILA 421
+ P + K+ G +R + + D +G VEL LW N D D ++A
Sbjct: 322 VYPPFQITAKSTGRVFDRRNILVVDETGFGVELGLWNNTATD--------FDVEEGTVVA 373
Query: 422 VKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRA 481
VK +VSDF G+ + + P PE+ +LK W++ G + S+ D+ G
Sbjct: 374 VKGCKVSDFGGRTLSLTQAGSIIPNPGTPESFKLKGWYDNIGIHESFKSLKIDTGGSGAD 433
Query: 482 DI--RKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMI----GDRP---C 532
I R ++++ +E G+ +KPD+ ++ A++ + K +NF Y ACP ++ RP C
Sbjct: 434 KIAQRISINRALEEHSGSTDKPDYFSIKASVTFCKPENFAYPACPNLVNSADATRPAQTC 493
Query: 533 NKK-VMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAK 591
NKK V + DG W C++C + E +RY+L + D TG W+T F + A++++G+ A
Sbjct: 494 NKKLVQQDHDGTWRCEKCAMTYEEPTWRYVLSCSVTDSTGHMWLTLFDDQAKKLLGIDAT 553
Query: 592 DLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSET 651
+L +K ++N E+ +++ N F ++ ++K ++ET++DE + + +Y+SE+
Sbjct: 554 EL--IKKKEENPEQVNQIMNNTLFKEFSLRVKARQETYNDELKTRYQAAGINELDYASES 611
Query: 652 RFILDLMDKL 661
+F++ +D+L
Sbjct: 612 QFLIKELDQL 621
>gi|356511809|ref|XP_003524615.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Glycine max]
Length = 620
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 195/672 (29%), Positives = 324/672 (48%), Gaps = 92/672 (13%)
Query: 3 VLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVR 62
V+QV+DLK +K + +DG + M+ + V SG +Q ++R
Sbjct: 30 VVQVLDLKATGNK-----------YMFTANDGKTKLKAMIPSDMRSQVLSGAIQNLGLIR 78
Query: 63 LTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVS 122
+ +T N I N+ D ++ KC+ + + + S E+ GS G+
Sbjct: 79 VLDYTVNDIPNKS-----DKYLLAIKCEAVSPALEMEIKS--EESGS----------GIL 121
Query: 123 LQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFS 182
L KP+V G + + P+ E
Sbjct: 122 L---------------------------------KPKVEGGVKTEGAAAGILLKPKQEVV 148
Query: 183 RPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKG 242
A+ R + N + + R+ P+ +LNPY G WTIK VT+KG
Sbjct: 149 TKSANQILR----------EQHGNSAPAARMAMTRRVRPLVSLNPYQGNWTIKVSVTSKG 198
Query: 243 ELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+R Y N RGDG VF+ +L D DG +I+ T FN A +F+ + GK+Y +SRG+LK A
Sbjct: 199 NMRTYKNARGDGCVFNVELTDEDGTQIQATMFNNAARKFFDKFVLGKVYYISRGTLKVAN 258
Query: 303 KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNS-VVDLIGVVS 361
K F + ND E+ L+ S V+ + + +P +F+F I+ + N S +VD+IGVV
Sbjct: 259 KQFKTVQNDYEMTLNENSEVEEVVGEASFVPETKFNFVQIDQLGPHVNKSELVDVIGVVK 318
Query: 362 YISPTASLMRKNGTET-QKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPIL 420
+S T S+ RK+ E+ KR + + D + ++V ++LW G L + D P++
Sbjct: 319 NVSSTMSIRRKSDNESIPKRDITIADDTKKTVVVSLWNELATTTGEELLDIVDKS--PVV 376
Query: 421 AVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGR 480
A+K+ +V DF G + TI + + + PD PEA L+ W++ EGK+ S+ S +
Sbjct: 377 AIKSLKVGDFQGVSLSTIGRSVVLVNPDIPEAKNLRSWYDFEGKDAAMDSVGSGSSPISN 436
Query: 481 ADIRKTVSQ-------IKDEGLGTKEKPDWITVSATIVYIKCDN-FCYTACPIMIGDRPC 532
IR + I + LG KP + ++ I +IK D Y AC + C
Sbjct: 437 NGIRSVYTDRIHLSDIISNPSLGDG-KPAFFSLRGHITFIKPDQAMWYRAC------KTC 489
Query: 533 NKKVMNN-GDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAK 591
NKKV + G G W CD C +S +C RYI+ ++ D + T+++ F + AE+I+G SA
Sbjct: 490 NKKVTESFGSGYW-CDGCQKSDEQCSLRYIMVAKVSDGSAETFISVFNQEAEKIVGCSAD 548
Query: 592 DLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSET 651
DL +LK + D + ++ AT+ ++LF++ V ++ E+R + TV ++++E+
Sbjct: 549 DLDNLKLQEGEDNPYQMTLKEATWAQHLFRVSVTPNEYNGEKRQRITVRAVVPVDFAAES 608
Query: 652 RFILDLMDKLKS 663
RFIL+ + K+++
Sbjct: 609 RFILEELSKMRA 620
>gi|327283810|ref|XP_003226633.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Anolis carolinensis]
Length = 607
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 164/441 (37%), Positives = 250/441 (56%), Gaps = 28/441 (6%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
++++PIA+LNPY KWTI ARVT KG++R ++N RG+GK+F +L+D + GEIR T FN
Sbjct: 166 AKVVPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFND 224
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEI-FLDMTSMVQLCYEDDASIPRQ 335
D+FY +E K+Y S+G LK A K + + ND EI F++ TS++ ED +P
Sbjct: 225 QVDKFYPLIEMNKVYYFSKGQLKVANKQYTSVKNDYEITFINDTSVIPC--EDAQHLPSV 282
Query: 336 QFHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVEL 394
QF F I ++E +++VD+IGV +Y T M+ E KR LHL D SG+ V +
Sbjct: 283 QFDFVSIAELERTSKDAIVDVIGVCKAYEEVTKLTMKTTNREVSKRDLHLVDSSGKMVSV 342
Query: 395 TLWGNFC-NDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAH 453
LWG N DG R P++A+K RVSDF G+ + +S++ L + PD PEA
Sbjct: 343 ALWGQEADNFDGSRQ---------PVVAIKGARVSDFGGRSLSVLSSSTLVVNPDRPEAF 393
Query: 454 RLKEWFEKEGKNTQSVSISRDSLSVGRADIR-------KTVSQIKDEGLGTKEKPDWITV 506
RL+ WF+ +GK+ ++ SIS KT+ + K LG EK D+ +
Sbjct: 394 RLRGWFDSQGKHLETSSISNGWSGGSGGSGGGGSGPNWKTLRESKTGNLGQGEKADYYSC 453
Query: 507 SATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQI 566
T++Y++ + Y ACP CNKK+++ +G + C++C+ +R ILQ I
Sbjct: 454 IGTVIYLRKEKCLYKACP----SPDCNKKLVDEQNGLYRCEKCNLETPNFKHRMILQVNI 509
Query: 567 QDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKE 626
D WVT FQE AE I+G +A L LK D++ F ++ + F + F+++ K
Sbjct: 510 ADFQDQQWVTCFQEAAETILGQNATYLGELKETDEH--AFNSIIEKSFFATFEFRVRAKM 567
Query: 627 ETFSDEQRVKSTVVKAERYNY 647
E F+DE R+K+T ++ + N+
Sbjct: 568 EMFNDELRLKTTALEVKPVNH 588
>gi|195108849|ref|XP_001999005.1| GI24276 [Drosophila mojavensis]
gi|193915599|gb|EDW14466.1| GI24276 [Drosophila mojavensis]
Length = 610
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 161/445 (36%), Positives = 239/445 (53%), Gaps = 20/445 (4%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PIA+L+PY KW IKARVT+K +R ++N RG+GK+F DL+D + GEIR T F D+
Sbjct: 175 PIASLSPYQNKWVIKARVTSKTAIRTWSNARGEGKLFSMDLMD-ESGEIRATAFKEQCDK 233
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDD-ASIPRQQFHF 339
FY +E G +Y S+ LKPA K ++ L ND E+ +MVQLC EDD IP +F
Sbjct: 234 FYDLIEVGNVYFFSKCQLKPANKQYSQLKNDYEMTFTGETMVQLCDEDDNGGIPEIKFDL 293
Query: 340 RPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWG 398
PI+ V MEN VD IG+ + + R E +KR L L DMS +V LTLWG
Sbjct: 294 IPISQVSNMENKEAVDTIGICKEVGELQTFTSRTTNKEFKKRELTLVDMSNAAVTLTLWG 353
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFN-GKVVGTISTTQLFIEPDFPEAHRLKE 457
D+ + D V P++ VK R+++FN GK + + L I PD PEAH+L+
Sbjct: 354 ----DEAVNF----DGHVQPVILVKGSRINEFNGGKSLSMGGGSILKINPDIPEAHKLRG 405
Query: 458 WFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDN 517
WF+ G + S +S + + T+ + LG+ +KPD+ A + +K +N
Sbjct: 406 WFDNGGGDNISTMVSARTGGGSFSTDWVTLKDARIRNLGSGDKPDYFQCKAVVHIVKQEN 465
Query: 518 FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTA 577
Y ACP CNKKV++ G+G++ C+RC+ + YR ++ I D T WVT
Sbjct: 466 AFYKACP----QTDCNKKVVDEGNGQYRCERCNAAFPNFKYRLLINMSIGDWTSNRWVTC 521
Query: 578 FQECAEEIMGMSAKDLYSLKYVDQNDEKFGE-VVRNATFTKYLFKLKVKEETFSDEQRVK 636
F E E+++ SA+++ +ND E + + F+ Y+FKL+ K E + D R K
Sbjct: 522 FSEVGEQLLKHSAQEVGD---ALENDPATAEKMFSDINFSSYIFKLRCKNEMYGDMTRNK 578
Query: 637 STVVKAERYNYSSETRFILDLMDKL 661
TV NY + ++ + ++
Sbjct: 579 LTVQSMSPINYREYNKHLIKELKEM 603
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 14/103 (13%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSR-SQQGMLATQRNELVTSGLLQIGSV 60
PVLQ++ +K + Q+RFR+++SDG + MLA+Q NE+ GLL ++
Sbjct: 23 PVLQILGIKRI------NTNTDQERFRLLMSDGKYYNSYAMLASQLNEMQHKGLLNENTI 76
Query: 61 VRLTKFTCNVI----QNRMIVIVMDLDVIIDKCD---PIGKPV 96
VRL K+ +++ + ++IV ++ V+ + IG+PV
Sbjct: 77 VRLDKYMTSMVGKEGSGKRVLIVTEVTVLNSGDEVKTKIGEPV 119
>gi|225457192|ref|XP_002283959.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit isoform
1 [Vitis vinifera]
Length = 625
Score = 283 bits (723), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 155/470 (32%), Positives = 259/470 (55%), Gaps = 19/470 (4%)
Query: 204 YANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLD 263
+ N + + R+ P+ +LNPY G WTIK R+T KG +R Y N RG+G VF+ +L D
Sbjct: 163 HGNMAPAARMAMTRRVHPLVSLNPYQGNWTIKVRLTNKGTMRTYKNARGEGCVFNVELTD 222
Query: 264 SDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQ 323
DG +I+ T FN A +FY + + GK+Y +S+G+LK A K F + ND E+ L+ S V+
Sbjct: 223 EDGTQIQATMFNEAARKFYEKFQLGKVYYISKGALKVANKQFKTVQNDYEMTLNENSEVE 282
Query: 324 LCYEDDASIPRQQFHFRPINDVEGMEN-NSVVDLIGVVSYISPTASLMRK-NGTETQKRT 381
++ IP +F F I ++ N +VD+IGVV +SPT S+ RK N KR
Sbjct: 283 EASNEETFIPEAKFKFVEIEELGPYVNGKELVDVIGVVQSVSPTMSIRRKSNNDIVPKRD 342
Query: 382 LHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTT 441
+ + D + ++V ++LW + + G L D FPI+A+K+ +V DF G + T+S +
Sbjct: 343 ITIADKTKKTVVVSLWNDHATNVGQELLDNADK--FPIVAIKSLKVGDFQGVSLSTLSKS 400
Query: 442 QLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADI------RKTVSQIKDEGL 495
+ + PD PE+ +L+ W++ EGK SI D + + R ++S +
Sbjct: 401 IVLVNPDTPESKKLRSWYDSEGKGASMASIGSDISPSSKGGVKSMYYDRVSLSHVTSNPS 460
Query: 496 GTKEKPDWITVSATIVYIKCD-NFCYTACPIMIGDRPCNKKVMNN-GDGRWHCDRCDQSV 553
++KP + ++ A I +IK D Y AC + CNKKV + G G W C+ C ++
Sbjct: 461 LGEDKPSFFSIRAYISFIKPDQTMWYRAC------KTCNKKVTDAIGSGYW-CEGCQKND 513
Query: 554 VECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNA 613
EC RYI+ ++ D +G W++ F E AE + G SA +L LK + + F + ++ A
Sbjct: 514 DECSLRYIMVVKVSDASGEAWLSLFNEQAERMFGCSADELDKLKSQEGEENLFQQKLKEA 573
Query: 614 TFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKS 663
+ +LF++ V + + +E+R + T ++++E+R +L+ + K+K+
Sbjct: 574 IWVPHLFRISVAQHEYMNEKRQRITARAVVPVDFAAESRLLLEEISKMKT 623
>gi|297733862|emb|CBI15109.3| unnamed protein product [Vitis vinifera]
Length = 602
Score = 282 bits (722), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 155/470 (32%), Positives = 259/470 (55%), Gaps = 19/470 (4%)
Query: 204 YANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLD 263
+ N + + R+ P+ +LNPY G WTIK R+T KG +R Y N RG+G VF+ +L D
Sbjct: 140 HGNMAPAARMAMTRRVHPLVSLNPYQGNWTIKVRLTNKGTMRTYKNARGEGCVFNVELTD 199
Query: 264 SDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQ 323
DG +I+ T FN A +FY + + GK+Y +S+G+LK A K F + ND E+ L+ S V+
Sbjct: 200 EDGTQIQATMFNEAARKFYEKFQLGKVYYISKGALKVANKQFKTVQNDYEMTLNENSEVE 259
Query: 324 LCYEDDASIPRQQFHFRPINDVEGMEN-NSVVDLIGVVSYISPTASLMRK-NGTETQKRT 381
++ IP +F F I ++ N +VD+IGVV +SPT S+ RK N KR
Sbjct: 260 EASNEETFIPEAKFKFVEIEELGPYVNGKELVDVIGVVQSVSPTMSIRRKSNNDIVPKRD 319
Query: 382 LHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTT 441
+ + D + ++V ++LW + + G L D FPI+A+K+ +V DF G + T+S +
Sbjct: 320 ITIADKTKKTVVVSLWNDHATNVGQELLDNADK--FPIVAIKSLKVGDFQGVSLSTLSKS 377
Query: 442 QLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADI------RKTVSQIKDEGL 495
+ + PD PE+ +L+ W++ EGK SI D + + R ++S +
Sbjct: 378 IVLVNPDTPESKKLRSWYDSEGKGASMASIGSDISPSSKGGVKSMYYDRVSLSHVTSNPS 437
Query: 496 GTKEKPDWITVSATIVYIKCD-NFCYTACPIMIGDRPCNKKVMNN-GDGRWHCDRCDQSV 553
++KP + ++ A I +IK D Y AC + CNKKV + G G W C+ C ++
Sbjct: 438 LGEDKPSFFSIRAYISFIKPDQTMWYRAC------KTCNKKVTDAIGSGYW-CEGCQKND 490
Query: 554 VECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNA 613
EC RYI+ ++ D +G W++ F E AE + G SA +L LK + + F + ++ A
Sbjct: 491 DECSLRYIMVVKVSDASGEAWLSLFNEQAERMFGCSADELDKLKSQEGEENLFQQKLKEA 550
Query: 614 TFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKS 663
+ +LF++ V + + +E+R + T ++++E+R +L+ + K+K+
Sbjct: 551 IWVPHLFRISVAQHEYMNEKRQRITARAVVPVDFAAESRLLLEEISKMKT 600
>gi|169769542|ref|XP_001819241.1| replication factor A protein 1 [Aspergillus oryzae RIB40]
gi|83767099|dbj|BAE57239.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391863708|gb|EIT73008.1| single-stranded DNA-binding replication protein A [Aspergillus
oryzae 3.042]
Length = 605
Score = 282 bits (721), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 158/447 (35%), Positives = 260/447 (58%), Gaps = 23/447 (5%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI A++PY KWTIKAR T+K +R ++N+ GDGK+F +LLD D GEIR T FN
Sbjct: 171 IYPIEAISPYSHKWTIKARCTSKSNIRTWHNRNGDGKLFSVNLLD-DSGEIRATGFNDQC 229
Query: 279 DQFYHQVEAGKIYLVSR-GSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
D Y + G +Y +S +K A+K F +L+ND E+ + ++V+ ED A +P+ +F
Sbjct: 230 DMLYDVFQEGSVYYISSPCGVKLAKKQFTNLNNDYELTFERDTVVEKA-EDQADVPQIRF 288
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVELTL 396
F I D++ +E ++ +D+IGV+ ++ + +M K + KR L L D +G SV LT+
Sbjct: 289 SFTTIGDLQSVEKDTTIDVIGVLKEVAEVSQIMSKTTNKPYNKRELTLVDSTGFSVRLTV 348
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
WG+ L +S ++A K +VSDF G+ + +S+ + ++PD EAH+LK
Sbjct: 349 WGS----TALNFNVTPES----VIAFKGVKVSDFGGRSLSLLSSGSMTVDPDIEEAHKLK 400
Query: 457 EWFEKEGKN---TQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYI 513
W++ +G++ S+ + S + + KTV+Q+K+E LG ++ + ++ AT++YI
Sbjct: 401 GWYDAQGRDGVFASHASMPGVAASTTKLEQFKTVAQVKEEQLGMSDEVAYFSLKATVIYI 460
Query: 514 KCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLT 573
K D CY AC CNKKV G+W C+RCD++ +YRYI+ + DHTG
Sbjct: 461 KQDTMCYPACL----SEGCNKKVTELDPGQWRCERCDKTHPRPEYRYIMLISVSDHTGQL 516
Query: 574 WVTAFQECAEEIMGMSAKDLYSLKYVDQNDEK-FGEVVRNATFTKYLFKLKVKEETFSDE 632
+++ F E +MG SA L ++ QND+K G++ ++A + F+ + K + F D+
Sbjct: 517 YLSCFDEVGRYMMGTSADQLMEIR---QNDDKAAGDIFQDANCRTWNFRCRAKIDNFGDQ 573
Query: 633 QRVKSTVVKAERYNYSSETRFILDLMD 659
QR++ +V A+ NYS E + +++D
Sbjct: 574 QRIRCQIVTAKPVNYSEEALRLANMID 600
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 66/117 (56%), Gaps = 10/117 (8%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PV+Q + +K + QQ+ Q+R+R V SD S Q MLATQ N VTSG L+ G V
Sbjct: 28 PVVQCVQIKPLPP-----QQNNQERYRAVFSDISNYVQTMLATQANRFVTSGQLRKGCFV 82
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIID--KCDPIGKPVP---AQRPSSNEQPGSVTGN 113
RL F N ++ + I+I++DL+V+ D + + IG+P P QP +++ N
Sbjct: 83 RLKSFQANSVKGKKILIILDLEVLQDLGEAEKIGEPKPLESKTEEEEKSQPTTISSN 139
>gi|452981313|gb|EME81073.1| hypothetical protein MYCFIDRAFT_29007 [Pseudocercospora fijiensis
CIRAD86]
Length = 621
Score = 282 bits (721), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 156/459 (33%), Positives = 261/459 (56%), Gaps = 22/459 (4%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI A++PY KWTIKAR T+KG+++ ++N+ G+GK+F + LD + EIR T FN
Sbjct: 176 ITPIEAVSPYQHKWTIKARCTSKGDIKTWHNKNGEGKLFSANFLD-ETSEIRATMFNEQC 234
Query: 279 DQFYHQVEAGKIYLVSR-GSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
DQ+Y ++ G +Y +S ++ A+K F++L ND E+ + + V+ DD +P+ ++
Sbjct: 235 DQWYDVLQEGSVYYISSPCKVQLAKKQFSNLPNDYELTFERDTQVEKA--DDEGVPQVKY 292
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVELTL 396
F + ++ +E ++V D+IGV++ + ++ K ++ KR L L D +G +V LT+
Sbjct: 293 SFTNLESLQNVEKDTVTDVIGVLADVGEVNEIVSKTTSKPYSKRELTLVDDTGYNVRLTI 352
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
WG ++ D+ ++A K +VSDF G+ + +S+ + I+PD EA++LK
Sbjct: 353 WG--------KVAESFDASPEAVVAFKGVKVSDFGGRSLSLLSSGSMNIDPDIDEAYKLK 404
Query: 457 EWFEKEGKNTQSVSISRDSLSVG-----RADIRKTVSQIKDEGLGTKEKPDWITVSATIV 511
W++ G TQ S + +VG R D KT+ Q++DE LG + DW T+ ATIV
Sbjct: 405 GWYQANGSTTQFASHANTMATVGATSGGRKDDTKTIQQVRDENLGMTDATDWFTLKATIV 464
Query: 512 YIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTG 571
YIK DNF Y AC +PCNKKV +G W C++C+++ YRYI+ + DHTG
Sbjct: 465 YIKQDNFAYAACQTT-DPQPCNKKVTEVDNGSWRCEKCEKNWDAPKYRYIMSVNVSDHTG 523
Query: 572 LTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEK-FGEVVRNATFTKYLFKLKVKEETFS 630
W++ F + + ++GM A +L K ++ DEK + +A ++FK + K + +
Sbjct: 524 QLWLSCFDDVGQAMLGMPANELMVAK--EEGDEKRVTDAFADANCKSFVFKCRCKMDNYQ 581
Query: 631 DEQRVKSTVVKAERYNYSSETRFILDLMDKLKSGDSTSF 669
D+QRV+ V A ++ E++ + D++ S T F
Sbjct: 582 DQQRVRYQVQYANNIDFVRESKRLADIIKLYNSASDTLF 620
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 73/120 (60%), Gaps = 13/120 (10%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P+LQ + +K + Q +R+R+V +D QGML++Q N L+T G L+ GSV
Sbjct: 25 PILQCVQIKPMA-----QGAGGTERWRVVFNDTVNFIQGMLSSQSNHLITDGHLKKGSVC 79
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIID--KCDPIGKPVP--AQRPSSNE----QPGSVTGN 113
RLT++ N ++++ I+I+M+LDV+ + + D +G PV A +P + E QPG++ GN
Sbjct: 80 RLTQYQANFVKDKHILIIMNLDVLHEYGEQDKLGSPVALDAAKPEAQEDVKPQPGNIAGN 139
>gi|15239494|ref|NP_200908.1| Replication factor-A protein 1-like protein [Arabidopsis thaliana]
gi|10177323|dbj|BAB10649.1| replication protein A1 [Arabidopsis thaliana]
gi|28393124|gb|AAO41995.1| putative RNA helicase [Arabidopsis thaliana]
gi|332010026|gb|AED97409.1| Replication factor-A protein 1-like protein [Arabidopsis thaliana]
Length = 629
Score = 281 bits (719), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 198/673 (29%), Positives = 323/673 (47%), Gaps = 84/673 (12%)
Query: 3 VLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVR 62
V+QV+DLK + R+ +DG + M + SG +Q ++R
Sbjct: 29 VVQVVDLKPI-----------GNRYTFSANDGKTKVKAMFTASLTPEIISGKIQNLGLIR 77
Query: 63 LTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVS 122
L FT N I ++ + + KC+ +G + ++ ++
Sbjct: 78 LIDFTVNDISSKSTKYFL-----VTKCEAVGSVLDSE---------------------IN 111
Query: 123 LQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFS 182
L + G+ +A + + P + V G P+ EF
Sbjct: 112 LDSKS--------GEEEAREPKKQKLEHSPVSPLNDVVSTGITL---------KPKQEFV 154
Query: 183 RPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKG 242
AS + + M R R+ P+ +LNPY G WTIK RVT KG
Sbjct: 155 AKSASQIMSEQRGNAAPAARMAMTR----------RVHPLVSLNPYQGNWTIKVRVTNKG 204
Query: 243 ELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+R+Y N RG+G VF+ +L D +G +I+ T FN A +F+ + + GK+Y +SRGSLK A
Sbjct: 205 VMRNYKNARGEGCVFNVELTDEEGTQIQATMFNDAARKFFDRFQLGKVYYISRGSLKLAN 264
Query: 303 KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENN--SVVDLIGVV 360
K F + ND E+ L+ S V+ ++ IP +F+F PI ++ G+ N ++DLIGVV
Sbjct: 265 KQFKTVQNDYEMTLNENSEVEEASSEEMFIPETKFNFVPIEEL-GLYVNQKELIDLIGVV 323
Query: 361 SYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPI 419
+SPT S+ R+ E KR + L D S ++V ++LW + G L M D P+
Sbjct: 324 QSVSPTMSIRRRTDNEMIPKRDITLADESRKTVVVSLWNDLATGIGQELLDMADQS--PV 381
Query: 420 LAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVG 479
+A+K+ +V DF G + TIS + + I P+ PEA +LK WF+ EGK SI
Sbjct: 382 IAIKSLKVGDFQGVSLSTISRSNVVINPESPEAKKLKSWFDSEGKEISMSSIGSGMSPSA 441
Query: 480 RADIRK------TVSQIKDEGLGTKEKPDWITVSATIVYIKCD-NFCYTACPIMIGDRPC 532
+ R +S I +EKP + + A I +IK D Y AC + C
Sbjct: 442 KNGSRSLYTDRVLLSHITSNPSLFEEKPVFFSTRAYISFIKPDQTMWYQAC------KTC 495
Query: 533 NKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKD 592
NKKV D + C+ C + EC RYI+ ++ D +G TW+++F + AE+I+G SA +
Sbjct: 496 NKKVTEALDSGYWCEGCQRKYEECSLRYIMAVKVTDSSGETWISSFNDEAEKILGCSADE 555
Query: 593 LYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETR 652
L LK + ++ ++ AT++ ++F++ V + ++ E+R + TV ++++ETR
Sbjct: 556 LNKLKSEEGEVNEYQTKLKEATWSSHVFRVSVTQNEYNGEKRQRVTVKGVAPLDFAAETR 615
Query: 653 FIL-DLMDKLKSG 664
+L D+ +K K+
Sbjct: 616 LLLQDISNKNKTS 628
>gi|449547245|gb|EMD38213.1| hypothetical protein CERSUDRAFT_113363 [Ceriporiopsis subvermispora
B]
Length = 618
Score = 281 bits (719), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 191/640 (29%), Positives = 316/640 (49%), Gaps = 83/640 (12%)
Query: 26 RFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNRMIVIVMDLDVI 85
R+R+++SDG + Q ML+TQ N L+ + ++ + KF CN++Q + ++IV+ L V+
Sbjct: 49 RYRIIVSDGEQFLQAMLSTQLNYLIEENHIAKHTIAIVDKFACNMVQGKRLLIVLGLTVL 108
Query: 86 IDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPAAR 145
E+ G P +LQ A P+AR
Sbjct: 109 -------------------EKTADKVGEP------TALQ---------------APPSAR 128
Query: 146 HVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYA 205
+ P PE A ++ S P P + A A QS
Sbjct: 129 SGAESASP---APEASA---------SAISAPTPAPAPAPAPAPAPAHAPTPQQSVQRQG 176
Query: 206 NRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSD 265
+RG G S I PI +L+PYM WTIKA VT K +R ++N RG+GK+F +D D
Sbjct: 177 SRGSRG-----SAIYPIESLSPYMNNWTIKALVTQKSGIRKWSNDRGEGKLFSVVFVD-D 230
Query: 266 GGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLC 325
GEI+ T FN AD + +++ GK+YLVS+G + A+K FN++ N+ E+ L+ T+ V+ C
Sbjct: 231 TGEIKATAFNQAADDLHARLQEGKVYLVSKGRVGLAKKKFNNVVNEYELTLERTTEVEEC 290
Query: 326 YEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTET-QKRTLHL 384
D ++P +++F I ++ +E +++ D+I V+ P + K+ T KR L L
Sbjct: 291 -RDVVNVPTVKYNFVDIAGLQNVEKDAICDIIAVIKETGPMGEITTKSSNRTITKRELTL 349
Query: 385 RDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLF 444
D SG SV LTLWG +H P++A K +V DF G+ + ++ +
Sbjct: 350 VDRSGYSVRLTLWGAQAEQWNAGDEH-------PVVAFKGVKVGDFQGRSLSMSMSSSMQ 402
Query: 445 IEPDFPEAHRLKEWFEKEGKNTQSVSISRDS------LSVGRADIRKTVSQIKDEGLGTK 498
+ PD P+AH L+ W++ G S + +S L+ R ++ V ++K++G G
Sbjct: 403 LNPDIPDAHLLRGWYDGGGAEQSYQSHANNSGSGGSGLAFKREEVLP-VQEVKEQGFGEP 461
Query: 499 EKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDY 558
+K + + ATI++++ +N Y ACP C+KKV+ DG W C++C+ S + Y
Sbjct: 462 DKGEIFSSRATIMHVRPENLTYPACPT------CHKKVIEAHDG-WRCEKCNMSHEKPQY 514
Query: 559 RYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKY 618
RYI+ + D +G W F E + I GMS +L +K +++D + V+ + Y
Sbjct: 515 RYIITAAVADWSGQAWFQGFNEMGQVIFGMSGDELMEIK--ERSDTEMQNVLSRVIGSTY 572
Query: 619 LFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLM 658
F + K++ ++D R + V + E NY+ E +I +L+
Sbjct: 573 NFVCRAKQDNYNDNVRTRYGVSRIEPPNYAEEGNYIANLL 612
>gi|119480455|ref|XP_001260256.1| replication factor A 1, rfa1 [Neosartorya fischeri NRRL 181]
gi|119408410|gb|EAW18359.1| replication factor A 1, rfa1 [Neosartorya fischeri NRRL 181]
Length = 603
Score = 281 bits (719), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 158/447 (35%), Positives = 258/447 (57%), Gaps = 23/447 (5%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI A++PY KWTIKAR T+K ++ ++N+ +G++F +LLD D GEIR T FN
Sbjct: 169 IYPIEAISPYSHKWTIKARCTSKSAIKTWHNRNSEGRLFSVNLLD-DSGEIRATGFNEQC 227
Query: 279 DQFYHQVEAGKIYLVSRG-SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
D Y G +Y +S ++ A+K F +L+ND E+ + ++V+ ED + +P+ +F
Sbjct: 228 DLLYDVFHEGSVYYISSPCRVQIAKKQFTNLNNDYELTFEKDTVVEKA-EDQSDVPQVRF 286
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTET-QKRTLHLRDMSGRSVELTL 396
+F + D++ +E ++ +D+IGV+ + T ++ K ++ KR L L D SG SV LT+
Sbjct: 287 NFTTVGDLQSVEKDTTIDIIGVLKDVGETTQIVSKTTSKPYDKRELTLVDSSGFSVRLTI 346
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
WG+ L +S ++A K +VSDF G+ + +S+ + ++PD EAHRLK
Sbjct: 347 WGS----TALNFNATPES----VIAFKGVKVSDFGGRSLSLLSSGSMTVDPDIEEAHRLK 398
Query: 457 EWFEKEGKN---TQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYI 513
W++ +G++ T ++S S S R D KT++QI++E LG E + ++ T++YI
Sbjct: 399 GWYDAQGRHETFTSHATMSNASSSAMRLDHLKTIAQIREEQLGMSEDAVYFSLKGTVIYI 458
Query: 514 KCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLT 573
K DN CY AC CNKKV G+W C+ CD++ +YRYI+ + DHTG
Sbjct: 459 KQDNMCYPACL----SEGCNKKVTELDPGQWRCESCDKTHPRPEYRYIMLINVSDHTGQL 514
Query: 574 WVTAFQECAEEIMGMSAKDLYSLKYVDQNDEK-FGEVVRNATFTKYLFKLKVKEETFSDE 632
W++ F E +++MG SA L L+ QN EK G++ + A + F+ + K + F D+
Sbjct: 515 WLSCFDEVGKQLMGTSADQLMDLR---QNGEKAAGDIFQEANCRTWNFRCRAKLDHFGDQ 571
Query: 633 QRVKSTVVKAERYNYSSETRFILDLMD 659
QR++ V A+ NYS E ++ L++
Sbjct: 572 QRIRYQVSTAKPVNYSEEASRLMALIN 598
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 69/116 (59%), Gaps = 10/116 (8%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++Q + +K + Q + Q+R+R V SD S Q MLATQ N LVTSG+L+ G V
Sbjct: 28 PIVQCVQIKPLPP-----QPNHQERYRAVFSDISNYVQTMLATQANPLVTSGMLKKGCFV 82
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVI--IDKCDPIGKPVPAQRPSSNE---QPGSVTG 112
RL F N ++ + I+I++DL+V+ + + + IG+P P + + QP +++G
Sbjct: 83 RLKSFQANSVKGKKILIILDLEVLQELGEAEKIGEPKPLENKLEEDERPQPTTISG 138
>gi|91094635|ref|XP_970093.1| PREDICTED: similar to replication protein A 70 kDa DNA-binding
subunit [Tribolium castaneum]
gi|270016445|gb|EFA12891.1| hypothetical protein TcasGA2_TC004405 [Tribolium castaneum]
Length = 591
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 160/484 (33%), Positives = 273/484 (56%), Gaps = 24/484 (4%)
Query: 186 ASNYARTPQA----PYMQSPSMYANRGLVGKSEVPSRII-PIAALNPYMGKWTIKARVTA 240
AS + TP+ P ++ P + L +S +R++ I AL PY KW IKARVT
Sbjct: 122 ASETSSTPKVSTSEPPVKQPKSEQSTSL-NQSISETRVLNQINALTPYHNKWVIKARVTN 180
Query: 241 KGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKP 300
K ++R ++N RG+GK+F FDL+D D GEIR T F +AD++++ ++ K+Y +S+ LK
Sbjct: 181 KSDMRTWSNSRGEGKLFSFDLMD-DSGEIRCTAFRDMADKYFNYLQVDKVYYISKCQLKA 239
Query: 301 AQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVV 360
A K FN L N+ E+ + ++++ C DD +P+ +++F PI+ + E ++VD+IG+
Sbjct: 240 ANKQFNTLKNEYEMTIGNETIIEECLTDDGHVPQVKYNFVPISALAEKEVGNLVDVIGIC 299
Query: 361 SYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPI 419
S + K+ E +KR + L D S S+ LTLWG+ + D+ P+
Sbjct: 300 KEASEVQTFTSKSTNRELRKREITLVDQSKTSIALTLWGSQADS--------FDATNNPV 351
Query: 420 LAVKAGRVSDF-NGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSV 478
+ +K +V +F GK + T+ ++Q+ + PD PE HR+K W++ EG+ ++S V
Sbjct: 352 VVIKGAKVGEFGGGKNLSTLMSSQIKLNPDIPECHRIKGWYDSEGQYDAMTNLSERVGGV 411
Query: 479 GRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVM 537
G ++ +++D+GLG EK D+ V ATI+ ++ +N Y ACP CNKKV+
Sbjct: 412 GSFQTAWMSLKEVQDKGLGHSEKGDYFQVKATILLVRSENALYKACPT----DDCNKKVV 467
Query: 538 NNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLK 597
+ +G + C++C + YR ++ I D +G WV+ F AE+I+G +A+++ L
Sbjct: 468 DLENGMYRCEKCCREFPNFKYRLLVSMNIGDFSGNQWVSVFSSEAEKILGKTAQEI-GLT 526
Query: 598 YVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDL 657
D + E + + A F +++FK + K E ++DEQR+K VVK + NY ++ +
Sbjct: 527 MRD-DSEAGTAIFQAANFKQFIFKCRAKMENYNDEQRLKIVVVKVDPVNYEEYNGYLCEQ 585
Query: 658 MDKL 661
++ L
Sbjct: 586 IEAL 589
>gi|392871534|gb|EJB12179.1| replication factor-a protein 1 (rpa1) [Coccidioides immitis RS]
Length = 607
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 159/449 (35%), Positives = 257/449 (57%), Gaps = 22/449 (4%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
+ I PI AL+PY KWTIKAR T K ++ + N+ G+G++F +LLD D GEIR T F
Sbjct: 165 ANIYPIEALSPYSHKWTIKARCTNKSAIKKWYNRNGEGRLFSVNLLD-DSGEIRATAFKE 223
Query: 277 VADQFYHQVEAGKIYLVSRGS-LKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQ 335
D Y E G +Y +S ++ A++ F++++ND E+ + ++++ ED +P+
Sbjct: 224 QCDLLYPLFEEGSVYYISSPCRVQMAKREFSNVNNDYELTFERDTVIERA-EDHEDVPQM 282
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVEL 394
+F+F I + +E + +D++GV+ + P A + K+ G KR L L D +G SV L
Sbjct: 283 RFNFTSIGHLHSVEKGTTIDVLGVLKTVEPVAEVPSKSTGKRYTKRELMLVDDTGYSVPL 342
Query: 395 TLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
T+WG M DS ++A K +VSDF G+ + +++ + +PD EAH+
Sbjct: 343 TIWGGMATS----FDVMPDS----VVAFKGVKVSDFGGRSLSLLNSGTITSDPDIEEAHK 394
Query: 455 LKEWFEKEGKNTQ--SVSISRDS-LSVG-RADIRKTVSQIKDEGLGTKEKPDWITVSATI 510
LK W++ +GK Q + ++S ++ +S G R DI K + +++D LG EKPD+ ++ AT+
Sbjct: 395 LKGWYDAQGKFDQFATHALSENAAISTGTRQDIYKAIVEVRDNQLGMTEKPDYFSLRATV 454
Query: 511 VYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHT 570
V+IK D CY AC + +R CNKKV+ +W C+ C++S + +YRYIL + DHT
Sbjct: 455 VFIKQDTICYPAC---VQER-CNKKVVQVDPEQWLCEHCEKSSLRPEYRYILSANVSDHT 510
Query: 571 GLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFS 630
G W+ F E IMGM A L LK + +D+ E + +AT + K K K + F
Sbjct: 511 GQLWLNCFDEVGRAIMGMPANVLMELK--ESDDKAASEAILHATCQMWNLKCKAKLDNFQ 568
Query: 631 DEQRVKSTVVKAERYNYSSETRFILDLMD 659
++ RV+ V+ A N+S E+ ++ L+D
Sbjct: 569 NQPRVRYQVLGASPINFSHESSRLVSLID 597
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 7/126 (5%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++Q + +KL+ S R+R V SD S Q MLA+ N+LV +G L+ G V
Sbjct: 24 PIVQCLHVKLLSSPSGGPD-----RYRAVFSDISNFVQTMLASSLNDLVNNGALRRGCFV 78
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIID--KCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
+L F N ++ + I+IV+DLDV+ D +C+ IG P P + + + + T
Sbjct: 79 QLKSFQANFVKGKRILIVLDLDVLEDLGECERIGDPKPLETKVAEVEKPTPTAISSDGFY 138
Query: 120 GVSLQH 125
GV +H
Sbjct: 139 GVVSEH 144
>gi|170087382|ref|XP_001874914.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650114|gb|EDR14355.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 602
Score = 280 bits (717), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 149/446 (33%), Positives = 249/446 (55%), Gaps = 24/446 (5%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
+ PI L+PY WTIKARVT K E++ ++NQRG+GK+F+ L+D + GEIR T FN V
Sbjct: 169 VYPIEGLSPYQNSWTIKARVTQKSEIKTWSNQRGEGKLFNVTLMD-ETGEIRATGFNLVV 227
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D+ Y ++E GK+Y +S+ + A+K F++L ND E+ L+ + V C+E A++P ++
Sbjct: 228 DELYPKLEEGKVYYISKARVNLAKKKFSNLANDYELSLERNTEVVECHE-TANVPMIKYS 286
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVELTLW 397
F P++ ++ +E +SV D+IGVV +S + + K + KR L L D SG SV LTLW
Sbjct: 287 FVPLSGLQDLEKDSVCDVIGVVKEVSALSEITSKATNRQIPKRELTLVDKSGFSVRLTLW 346
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKE 457
G Q+ + P++A K +V DF G+ + S++ + + P E L+
Sbjct: 347 GKQAE------QYNAEDS--PVIAFKGVKVGDFGGRSLSMFSSSTMHVNPHLEECFALRG 398
Query: 458 WFEKEGKNT-----QSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVY 512
W++ G S ++S RA+IR ++ +K G G +KP++ + ATI++
Sbjct: 399 WYDSSGAEQSFHAHSSAGGGASTMSFNRAEIR-SLDDVKQAGFGLPDKPEYFSARATIMH 457
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
IK DN Y ACP + CNKKV+ +GD W C++C++S ++RYI+ + D +G
Sbjct: 458 IKADNISYPACPT----QNCNKKVIQDGDS-WRCEKCEKSFEAPEHRYIMSLAVADASGQ 512
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
W F E I G +A +L +++ D N ++ ++ A Y F + K++T+++
Sbjct: 513 AWFQGFNEVGTTIFGKTANELIAIR--DSNSAQYNVLLHKANCNTYNFSCRAKQDTYNEN 570
Query: 633 QRVKSTVVKAERYNYSSETRFILDLM 658
R++ + + +Y E + DL+
Sbjct: 571 TRIRYGISRIYPLDYKEEAMALRDLL 596
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 26 RFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNRMIVIVMDLDVI 85
R+R+++SDG Q MLATQ N +V + +V + K TCN +Q + ++I++ L V+
Sbjct: 50 RYRIIMSDGIHFIQAMLATQLNSMVQDNTIGRHTVAVIEKLTCNYVQEKRLIIILSLRVL 109
Query: 86 IDKCDPIGKPVPAQRP 101
+ IG+P + P
Sbjct: 110 AHSAEKIGEPKQMEAP 125
>gi|258568498|ref|XP_002584993.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237906439|gb|EEP80840.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 561
Score = 280 bits (717), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 190/614 (30%), Positives = 301/614 (49%), Gaps = 113/614 (18%)
Query: 47 NELVTSGLLQIGSVVRLTKFTCNVIQNRM----------------IVIVMDLDVIID--K 88
N L SG L+ G VRL F N ++ + I+IV+DLDV+ D +
Sbjct: 7 NHLAISGALRRGCFVRLKSFQANSVKGKRSAFPHTLAGNETDYIRILIVLDLDVLEDLGE 66
Query: 89 CDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPAARHVG 148
+ +G+P P + + P++ PA +
Sbjct: 67 SERLGEPKPLEMKA-----------PEAE-----------------------TPATTTIS 92
Query: 149 SNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYANRG 208
SN F P+ S P N+ R P M +P+ +AN
Sbjct: 93 SN----------------------GFYGMAPQHSAPRQQNHQRA-SVPTM-APA-HAN-- 125
Query: 209 LVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGE 268
I PI AL+PY KWTIKAR T K ++ ++N+ G+G++F+ +LLD D GE
Sbjct: 126 ----------IYPIEALSPYSHKWTIKARCTNKSAIKTWHNRNGEGRLFNVNLLD-DSGE 174
Query: 269 IRVTCFNAVADQFYHQVEAGKIYLVSRG-SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE 327
IR T F D Y E G +Y +S ++ A++ F++++ND E+ + ++++ E
Sbjct: 175 IRATAFKEQCDLLYPLFEEGSVYYISSPCRVQMAKRGFSNVNNDYELTFEKDTVIEKA-E 233
Query: 328 DDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRK-NGTETQKRTLHLRD 386
++ +P+ +F+F I ++ +E + +D +GV+ + + K G KR L L D
Sbjct: 234 NNDDVPQMRFNFTNIGGLQSVEKGTTIDFLGVLKSVDQVTEVPSKATGKRYTKRELTLVD 293
Query: 387 MSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIE 446
+G SV LT+WGN N M DS ++A K +VSDF G+ + +S+ + +
Sbjct: 294 DTGFSVRLTIWGNMAN----TFDVMPDS----VIAFKGVKVSDFGGRSLSLLSSGTITAD 345
Query: 447 PDFPEAHRLKEWFEKEGKNTQ----SVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPD 502
PD EAH+LK W++ +GK Q + S + + R D KT+ +++DE LG EKPD
Sbjct: 346 PDIEEAHKLKGWYDAQGKFDQFTFHAFSENATGATGSRQDPPKTIVEVRDEQLGMSEKPD 405
Query: 503 WITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYIL 562
+ + AT+V+IK DN CY AC + +R CNKKV+ G W C+ C++S + +YRYIL
Sbjct: 406 YFALRATVVFIKQDNICYPAC---VQER-CNKKVIQLDSGEWLCEHCEKSTPQPEYRYIL 461
Query: 563 QFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFG-EVVRNATFTKYLFK 621
+ DHTG WV F E +MG++A L +K +ND+K E + +A + FK
Sbjct: 462 SANLSDHTGQLWVNCFDEVGRSLMGITANSLMEMK---ENDDKVASEAILDANCKMWNFK 518
Query: 622 LKVKEETFSDEQRV 635
+ K + F D +R+
Sbjct: 519 CRAKLDNFQDTERL 532
>gi|402085897|gb|EJT80795.1| replication factor-A protein 1 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 628
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 157/448 (35%), Positives = 260/448 (58%), Gaps = 22/448 (4%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI +L+PY KWTIKARV++K ++R ++ G+GK+F +LLD + GEI+ T FN
Sbjct: 198 IYPIESLSPYQHKWTIKARVSSKSDIRTWHKPSGEGKLFSVNLLD-ETGEIKATGFNNEC 256
Query: 279 DQFYHQVEAGKIYLVSRG-SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
++FY +E ++Y +S ++ A+K F +L ND E+ + + ++ ED +++P+ +F
Sbjct: 257 EKFYDLLEENQVYYISSPCRVQMAKKQFTNLPNDYEMTFEDGTQIEKA-EDQSNVPQVRF 315
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTL 396
+F I +++ +E ++ VDLIGV+ + ++ KN G KR L L D SG SV +T+
Sbjct: 316 NFCNIQELQEVEKDATVDLIGVLKEAADITQIVSKNSGKNFDKRELTLVDDSGYSVRMTI 375
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
WG + D+ ++A K +V DF G+ + +S+ + ++PD PEAHRLK
Sbjct: 376 WG--------KTALGFDAKPESVIAFKGAKVGDFGGRSLSLLSSGTMTLDPDIPEAHRLK 427
Query: 457 EWFEKEGKNTQSVSISRDSL--SVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIK 514
W++ G++ + + SL + GR D KTVSQ+KDEGLG E + + ATIV+I+
Sbjct: 428 GWYDSSGRDNSFATHNTGSLGAATGRKDELKTVSQVKDEGLGM-ETDTYFNLKATIVFIR 486
Query: 515 CDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTW 574
+NFCY AC C+KKV+ +G+ W C++C S +YRYI+ + DHTG W
Sbjct: 487 QENFCYPAC----MSATCSKKVVEDGEN-WRCEKCQISHPRPEYRYIMSVNVNDHTGQLW 541
Query: 575 VTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQR 634
V+ F + IMG SA +L +LK ++++E F A + F+ + K +TF + QR
Sbjct: 542 VSCFDDVGRIIMGKSADELMALK--EEDEESFTRAFEAANCRRLSFRCRAKMDTFGEVQR 599
Query: 635 VKSTVVKAERYNYSSETRFILDLMDKLK 662
V+ V+ A ++ E + +++ + +
Sbjct: 600 VRYQVMSAAPMDWKGEAARLTEMIKQFE 627
Score = 66.2 bits (160), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 55/85 (64%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
+PVLQ + +KL+ +KQ +R+R+VLSD Q ML+TQ N ++ LL GS+
Sbjct: 30 VPVLQCLQIKLLENKQANPDAPFPERYRVVLSDMDNYIQCMLSTQANHIIHDNLLYKGSI 89
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVI 85
VR+ ++ + ++ R I++++DL+VI
Sbjct: 90 VRVRSYSASQLKGRSILVLLDLEVI 114
>gi|363754309|ref|XP_003647370.1| hypothetical protein Ecym_6168 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891007|gb|AET40553.1| hypothetical protein Ecym_6168 [Eremothecium cymbalariae
DBVPG#7215]
Length = 620
Score = 280 bits (716), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 148/445 (33%), Positives = 249/445 (55%), Gaps = 19/445 (4%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I I L+PY WTIKARV+ KG+++ ++NQRG+GK+F+ + LD+ GEIR T FN A
Sbjct: 188 IFAIEQLSPYQNMWTIKARVSFKGDIKTWHNQRGEGKLFNVNFLDT-SGEIRATAFNDNA 246
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
+++ ++ GK+Y VS+ ++P++ F++L + E+ LD ++V+ C+E +P+ F
Sbjct: 247 MKYFEILQEGKVYYVSKARIQPSKPQFSNLKHPYELQLDRDTVVEECFEA-TDVPKMNFS 305
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
F ++ + ME NS VD++G++ ++P + K+G + +R + + D +G S+ + LW
Sbjct: 306 FVKLDHLSSMEANSSVDVLGIIQTVNPPFEMTAKSGKKFNRRDIVIVDDTGYSISVGLWN 365
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEW 458
D L G ++AVK+ RV+DF GK + ++ L PD PEA+ +K W
Sbjct: 366 EQAVDFNL------PEG--SVIAVKSARVTDFAGKSLSMGFSSTLHPNPDIPEAYAIKGW 417
Query: 459 FEKEGKNTQSVSISRDSLSVGRADI---RKTVSQIKDEGLGTKEKPDWITVSATIVYIKC 515
+ +G T S+ ++ G R T+ + K+E LG EK D+ V I ++K
Sbjct: 418 YNAKGSETNFHSLKTEAGESGAVKFIANRITIGRAKEENLGRSEKGDYFNVKGAINFLKV 477
Query: 516 DNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWV 575
DNF Y AC C KKV+ DG W C++C +RY+L I D T W+
Sbjct: 478 DNFAYPAC----SSEGCQKKVIEQTDGTWRCEKCQVDHPNPKWRYMLTISILDETSQIWL 533
Query: 576 TAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRV 635
T F + AE+++GM A L LK D E+F V ++ ++ F+++ +E+T+++E RV
Sbjct: 534 TLFNDQAEKLLGMDANTLTKLKNTDS--EQFQRVTQSVQMNEFDFRIRAREDTYNEETRV 591
Query: 636 KSTVVKAERYNYSSETRFILDLMDK 660
+ TVV + +E+ F+ + + K
Sbjct: 592 RYTVVNLYPLRWKTESEFLAEELSK 616
>gi|389748589|gb|EIM89766.1| replication factor-a protein [Stereum hirsutum FP-91666 SS1]
Length = 596
Score = 279 bits (714), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 153/489 (31%), Positives = 274/489 (56%), Gaps = 26/489 (5%)
Query: 177 PRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSE-VPSRIIPIAALNPYMGKWTIK 235
P E + P ASN T +PS+ S + I PI L+PY WTIK
Sbjct: 121 PTDEATTPAASNITPTSAPSATTTPSVPQQPRQQQSSRGTRNNIFPIEGLSPYQNNWTIK 180
Query: 236 ARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSR 295
ARV K ++R Y+NQRG+GK F+ L+D D GEI+ T FNAVAD+ Y ++ K+Y +S+
Sbjct: 181 ARVIQKSDIRTYSNQRGEGKFFNVTLMD-DSGEIKGTGFNAVADELYDKLVEDKVYYISK 239
Query: 296 GSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVD 355
+ +++ F+ + E+ L+ + ++ C+ D +++P +++F + ++E + +S+ D
Sbjct: 240 ARVNLSKRKFSSAQ-EYELSLERNTEIEECH-DTSNLPVVKYNFIELGNLEELPKDSICD 297
Query: 356 LIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSG 415
+IGVV +S + + K KR L L D S SV LTLWG + ++
Sbjct: 298 VIGVVKDVSEVSEIQTKTQRTLSKRELTLVDSSAFSVRLTLWG--------KQAEQYNAS 349
Query: 416 VFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQ------SV 469
++A K +V DF G+ + S++ + I PD PEAH ++ W++ G +TQ S+
Sbjct: 350 PNSVIAFKGVKVGDFGGRSLSMFSSSTMAINPDMPEAHNIRGWYDDIGTSTQFQAHTSSM 409
Query: 470 SISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGD 529
+ + ++ R+++R T++ +K+ LG+ +K ++ + AT+++I+ +N Y AC G
Sbjct: 410 TSAGTGGTINRSEMR-TLNDVKESQLGSSDKVEYFSCRATVMHIRGENISYPAC----GT 464
Query: 530 RPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMS 589
C+KKV+ DG W C++CD+S YRY++Q + D++G W++ F + + GM+
Sbjct: 465 EGCSKKVVEGHDG-WRCEKCDRSFETPTYRYMIQMAVADYSGQAWLSGFNDVGLIVFGMT 523
Query: 590 AKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSS 649
A +L+ +K +++D + +++ AT Y F + K++TF+D R++ + + + NY
Sbjct: 524 ANELHDIK--ERDDAIYTAILQKATCNTYNFACRAKQDTFNDTTRIRYGISRIQPLNYEE 581
Query: 650 ETRFILDLM 658
ET+ +DL+
Sbjct: 582 ETQSFVDLL 590
>gi|322778947|gb|EFZ09361.1| hypothetical protein SINV_08959 [Solenopsis invicta]
Length = 572
Score = 279 bits (714), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 156/447 (34%), Positives = 242/447 (54%), Gaps = 20/447 (4%)
Query: 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAV 277
R PIAAL+PY +W IKARV K ++ +++ RG+GK F L+D + GEIR F +
Sbjct: 135 RTTPIAALSPYQNRWVIKARVIHKSLIKTWSDSRGEGKFFFMGLID-ESGEIRCKAFGEM 193
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
D+FY + AG +Y +SR +LK A K +N + ND E+ + + + C + + IP Q+
Sbjct: 194 VDKFYDLIVAGNVYYISRCTLKTANKQYNSMKNDYEMLMTSDTEIVPCRDSNNDIPTLQY 253
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLW 397
+F PI+ VE E N ++D++GVV+ + + G E KR + + D S V +TLW
Sbjct: 254 NFSPISQVEHKEKNDLLDVLGVVTTVGDVQHFTARTGRELIKRNISIVDDSDTMVTVTLW 313
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKE 457
G + D+ I+A+K RV +FNGK + I ++ + +P+ PEAHRL+
Sbjct: 314 GTQAEE--------FDASNNTIIAIKEARVDEFNGKHLSLIMSSIIEKDPNIPEAHRLRG 365
Query: 458 WFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEK-PDWITVSATIVYIKCD 516
W+ G + + S+SR S T + D LG K PD T+ ATI I+ +
Sbjct: 366 WYTAVGHSETAKSLSRVGGSTDFNGPLYTFQEATDARLGKKMNLPDSFTIVATIKQIRTE 425
Query: 517 NFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVT 576
N Y ACP+ C KK+++ +G + C++C++ YR + ++ D TG W+T
Sbjct: 426 NSPYRACPL----ESCKKKLIDQNNGTFRCEKCNKKYPNFTYRLLANMELADATGSRWIT 481
Query: 577 AFQECAEEIMGMSAKDLYSLKYVDQND--EKFGEVVRNATFTKYLFKLKVKEETFSDEQR 634
AF E AE+I+GMSA++L LK D++ +K GE ATF ++F LK + E F D R
Sbjct: 482 AFNEEAEKILGMSAQELGELKENDKDAYLQKIGE----ATFKTFMFNLKARSEVFQDTMR 537
Query: 635 VKSTVVKAERYNYSSETRFILDLMDKL 661
+K NY + ++D + KL
Sbjct: 538 IKRVCTSVRPINYKTYLPHLIDKVSKL 564
>gi|154295413|ref|XP_001548142.1| hypothetical protein BC1G_13185 [Botryotinia fuckeliana B05.10]
Length = 595
Score = 279 bits (713), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 171/470 (36%), Positives = 267/470 (56%), Gaps = 33/470 (7%)
Query: 193 PQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRG 252
PQ P Q ++ + G S + I PI +L+PY KWTIKARVT+K ++R ++
Sbjct: 149 PQQPAAQDRALPSRNG-PSSSSSHATIYPIESLSPYAHKWTIKARVTSKSDIRTWSKPNS 207
Query: 253 DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLV-SRGSLKPAQKNFNHLHND 311
+GK+F +LLD + GEI+ T FN D Y + G +Y + S ++ A+K F++++ND
Sbjct: 208 EGKLFSVNLLD-ESGEIKATGFNEQCDALYETFQEGSVYYITSPCRVQIAKKQFSNINND 266
Query: 312 LEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMR 371
E+ + ++V+ ED ++P+ +++F I D++ +E +S VDLI V+ + + +
Sbjct: 267 YELMFERDTLVEKA-EDQDNVPQVRYNFSNIGDLQSIEKDSTVDLIAVLKEVGEISEITS 325
Query: 372 KNGTET-QKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDF 430
K ++ KR L L D +G SV LT+WG + D+ ++A K +VSDF
Sbjct: 326 KTTSKPYSKRELTLVDETGYSVRLTIWG--------KTATSFDASPESVVAFKGVKVSDF 377
Query: 431 NGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQI 490
G+ + +S+ + +PD EAH+LK G N S + GR D KT++Q+
Sbjct: 378 GGRSLSLLSSGSMSFDPDIQEAHKLK------GCNLASAGAAG-----GRQDPIKTIAQV 426
Query: 491 KDEGLG-TKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRC 549
KDEGLG ++E D+ + ATIVYIK DNFCY AC + CNKKV++ DG W C++C
Sbjct: 427 KDEGLGMSEENTDYFSSRATIVYIKQDNFCYPACL----NENCNKKVVDQNDGTWRCEKC 482
Query: 550 DQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGE- 608
+QS + +YRYIL + DHTG W+TAF E IMG SA +L LK +ND E
Sbjct: 483 NQSHPKPEYRYILALNVNDHTGQMWLTAFDEVGRLIMGKSADELMELK---ENDPPAMER 539
Query: 609 VVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLM 658
V +A FK++ K +T+ D+ RV+ +V+ A NY+++ + +L+
Sbjct: 540 VFEDANCKMMTFKVRCKTDTYQDQARVRYSVMSALAVNYAADALKLAELI 589
Score = 42.7 bits (99), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 23 QQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNR 74
Q +RFR+V+SD Q MLATQ N ++ G L G +RL + N ++ +
Sbjct: 47 QAERFRLVVSDIQNFVQCMLATQANHVIHDGKLTKGCFIRLKNYQANEVKGK 98
>gi|19111884|ref|NP_595092.1| DNA replication factor A subunit Ssb1 [Schizosaccharomyces pombe
972h-]
gi|2498845|sp|Q92372.1|RFA1_SCHPO RecName: Full=Replication factor A protein 1; AltName:
Full=Single-stranded DNA-binding protein p68 subunit
gi|1502413|gb|AAC49437.1| single-stranded DNA binding protein p68 subunit
[Schizosaccharomyces pombe]
gi|1814272|gb|AAC49694.1| Rpa1 [Schizosaccharomyces pombe]
gi|4049512|emb|CAA22533.1| DNA replication factor A subunit Ssb1 [Schizosaccharomyces pombe]
Length = 609
Score = 278 bits (712), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 143/445 (32%), Positives = 250/445 (56%), Gaps = 21/445 (4%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI L+PY KWTI+ARVT K E++H++NQRG+GK+F +LLD + GEIR T FN
Sbjct: 179 IYPIEGLSPYQNKWTIRARVTNKSEVKHWHNQRGEGKLFSVNLLD-ESGEIRATGFNDQV 237
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D FY ++ G +Y +SR + A+K + ++ N+ E+ + + ++ ED ++P +F
Sbjct: 238 DAFYDILQEGSVYYISRCRVNIAKKQYTNVQNEYELMFERDTEIRKA-EDQTAVPVAKFS 296
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLW 397
F + +V + ++V+D+IGV+ + P + R KR + + D +G + +TLW
Sbjct: 297 FVSLQEVGDVAKDAVIDVIGVLQNVGPVQQITSRATSRGFDKRDITIVDQTGYEMRVTLW 356
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKE 457
G + + + ILA K +V+DF G+ + ++++ + ++PD E+H LK
Sbjct: 357 GKTAIEFSVSEE--------SILAFKGVKVNDFQGRSLSMLTSSTMSVDPDIQESHLLKG 408
Query: 458 WFEKEGKNTQSVS---ISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIK 514
W++ +G+ + IS + GR+ RK +++++ E LG E PD+ ++ TIVYI+
Sbjct: 409 WYDGQGRGQEFAKHSVISSTLSTTGRSAERKNIAEVQAEHLGMSETPDYFSLKGTIVYIR 468
Query: 515 CDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTW 574
N Y ACP CNKKV + G G W C++C++ YRYI+ + DHTG W
Sbjct: 469 KKNVSYPACPAA----DCNKKVFDQG-GSWRCEKCNKEYDAPQYRYIITIAVGDHTGQLW 523
Query: 575 VTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQR 634
+ F + + IM +A +L L+ D+N F + A + Y+F+ + K++ F E R
Sbjct: 524 LNVFDDVGKLIMHKTADELNDLQENDEN--AFMNCMAEACYMPYIFQCRAKQDNFKGEMR 581
Query: 635 VKSTVVKAERYNYSSETRFILDLMD 659
V+ TV+ + ++ E++ +++ ++
Sbjct: 582 VRYTVMSINQMDWKEESKRLINFIE 606
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 70/128 (54%), Gaps = 15/128 (11%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P+LQV+ +K + S +R+R+VLSD Q ML+TQ N LV LQ G+ V
Sbjct: 25 PILQVLTVKELNSNPTS---GAPKRYRVVLSDSINYAQSMLSTQLNHLVAENKLQKGAFV 81
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDK--CDPIGKP-----VPAQRPSSNEQPGSVTGNP 114
+LT+FT NV++ R I+IV+ L+V+ + D IG P V A R NEQ N
Sbjct: 82 QLTQFTVNVMKERKILIVLGLNVLTELGVMDKIGNPAGLETVDALRQQQNEQ-----NNA 136
Query: 115 QSNATGVS 122
+ TG+S
Sbjct: 137 SAPRTGIS 144
>gi|354546965|emb|CCE43698.1| hypothetical protein CPAR2_213410 [Candida parapsilosis]
Length = 644
Score = 278 bits (711), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 192/678 (28%), Positives = 344/678 (50%), Gaps = 82/678 (12%)
Query: 3 VLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVR 62
V QV +LK V + +++R++LSDG S QG++ + + + ++
Sbjct: 28 VFQVTNLKSV------NTMNNSKKYRILLSDGVYSTQGIIEEKCTPYLENNNWSRYCTIQ 81
Query: 63 LTKFTCNVIQNRMIVIVMDLDVIIDKCDPIG-KPVPAQRPSSNEQPGSVTGNPQSNATGV 121
+ F + + +I+ D++++ P G KP P N +P+ A V
Sbjct: 82 VNAFR-TLATAKHFLIIEDVEILT----PTGEKPT---TPLINID-TYFAEHPEEAALTV 132
Query: 122 SLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEF 181
+ + ++ Q+P T+ P A+ S+ +GA S + + + P
Sbjct: 133 TKKQNSVDEKEQIPSTTNTPPVAQSTASS---------IGAAPASSTTTATATKQQYP-- 181
Query: 182 SRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAK 241
PS +G VG+ P+RI PI ++PY WTIKARV+ K
Sbjct: 182 -------------------PS----KG-VGQP-APARISPIETISPYQNTWTIKARVSYK 216
Query: 242 GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPA 301
GELR ++N +G+GKVF + LD + EI+ + FN A++ Y+ +E GK+Y +S+ + A
Sbjct: 217 GELRSWSNAKGEGKVFSINFLD-ESDEIKASAFNESAERAYNLLEEGKVYYISKAKVGAA 275
Query: 302 QKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVS 361
+K FN+L + E+ L+ + + C+ D++ +P+ F+F ++ ++ +E N++VD++G +
Sbjct: 276 RKKFNNLTHPYELTLEKDTEITECF-DESDVPKLNFNFVKLDKIQNLEPNAIVDVLGALK 334
Query: 362 YISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPIL 420
++P + K+ G +R + + D +G +V++ LW N D + G ++
Sbjct: 335 VVNPPFQITAKSTGKAFDRRDITIVDETGFAVDVGLWNNTAVD------FSVEEGT--VI 386
Query: 421 AVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEG--KNTQSVSISRD-SLS 477
A K +VSDFNG+ + + P PE+++LK WF+ G +N +S+ + S S
Sbjct: 387 AFKGCKVSDFNGRSLSLTQAGSIVPNPGTPESYQLKGWFDNVGVKENFKSMKTETNASSS 446
Query: 478 VGRADIRKTVSQIKDE------GLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDR- 530
+ R RKT++Q+++E G +++ + TV A + K +NF Y AC ++ +
Sbjct: 447 LDRLANRKTIAQVEEETNNNIDGGDQQQQSGYFTVKACFSFTKPENFAYPACTNIVSNNT 506
Query: 531 -------PCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAE 583
PCNKK++ D +W C+RCD S E YRYIL I D TG W T F E A+
Sbjct: 507 DSSKPGLPCNKKLVEVND-KWRCERCDLSYDEPTYRYILYISITDATGQLWTTLFDEQAK 565
Query: 584 EIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAE 643
+++G+ A +L L +++ E + A F +Y F+L+VK++TF+D+ +++ V
Sbjct: 566 KLLGIDANELMKLSLPNES-HAVAEYISRAYFKEYNFRLRVKQDTFNDQLKLRYQCVGLS 624
Query: 644 RYNYSSETRFILDLMDKL 661
+Y++E F+ +D L
Sbjct: 625 DIDYNTECEFLCSELDAL 642
>gi|302421690|ref|XP_003008675.1| replication factor-A protein [Verticillium albo-atrum VaMs.102]
gi|261351821|gb|EEY14249.1| replication factor-A protein [Verticillium albo-atrum VaMs.102]
Length = 609
Score = 278 bits (710), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 160/443 (36%), Positives = 242/443 (54%), Gaps = 40/443 (9%)
Query: 177 PRPEFSRPYASNYARTPQAPYMQSPSMYA----------------NRGLVGKSEVPSRII 220
P PE + P A N P +Q + Y +R + G S S I
Sbjct: 126 PLPEGAAPNAGNTGNAP----IQGQNFYGAKKEEEKEKPRISQIPSRSVAGTSHGSSNIY 181
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PI AL+PY KWTIKARVT K ++R ++ G+GK+F +LLD + GEI+ T FN DQ
Sbjct: 182 PIEALSPYAHKWTIKARVTQKSDIRTWHKPSGEGKLFSVNLLD-ESGEIKATGFNEQCDQ 240
Query: 281 FYHQVEAGKIYLVSRG-SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
+Y ++ G +Y +S + A+K F +L ND E+ + ++++ ED ++P+ +++F
Sbjct: 241 YYDLLQEGSVYYISNPCKVGMAKKQFTNLPNDYELTFERDTVIEKA-EDQTNVPQVRYNF 299
Query: 340 RPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWG 398
I +++ +E ++ VD++GV+ + + ++ K+ G +KR L L D S SV +T+WG
Sbjct: 300 CNIQELQSVEKDATVDVVGVLKDVGEVSQIVSKSTGKPYEKRELTLVDDSNFSVRITIWG 359
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEW 458
+ D+ ++A K +VSDF G+ + +S+ + ++PD P+AHRLK W
Sbjct: 360 --------KSAQGFDASPESVVAFKGVKVSDFGGRSLSLLSSGTMSVDPDIPDAHRLKGW 411
Query: 459 FEKEGKN----TQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIK 514
++ G+N T + S + GR D K V Q+KDE LG EK D+ + ATIVYIK
Sbjct: 412 YDSSGRNDAFATHNSMGSGLGAATGRPDEDKVVVQVKDEQLGMGEKQDFFNLKATIVYIK 471
Query: 515 CDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTW 574
D F Y AC + CNKKV++ DG W CD+CD S +YRYI+ + DHT W
Sbjct: 472 QDTFAYPAC----RNEGCNKKVVDMNDGTWRCDKCDVSHDRPEYRYIMSVNVCDHTSQLW 527
Query: 575 VTAFQECAEEIMGMSAKDLYSLK 597
++ F E IMGMSA L LK
Sbjct: 528 LSCFDEVGRSIMGMSADQLMELK 550
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 14/160 (8%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
+PVLQ + +K + QQ RFR+VLSD + Q M+ATQ N ++ G L +
Sbjct: 30 VPVLQCLQIKPLAG-----QQGAADRFRIVLSDINNYVQSMMATQVNHVIHDGQLVKNCL 84
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVIIDKCDP--IGKPVPAQRPSSNEQPGS-VTGNP--- 114
VR+T++ N ++ + I+I++ L+VI + P IG P+ + P + TGN
Sbjct: 85 VRVTQYQPNSVKGKNILIILGLEVIPELGTPEKIGDPLAFEPLPEGAAPNAGNTGNAPIQ 144
Query: 115 -QSNATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPP 153
Q+ + R+SQ+P + +V H SN+ P
Sbjct: 145 GQNFYGAKKEEEKEKPRISQIP--SRSVAGTSHGSSNIYP 182
>gi|159129170|gb|EDP54284.1| replication protein A 70 kDa DNA-binding subunit [Aspergillus
fumigatus A1163]
Length = 529
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 157/447 (35%), Positives = 257/447 (57%), Gaps = 23/447 (5%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI A++PY KWTIKAR T+K ++ ++N+ +G++F +LLD D GEIR T FN
Sbjct: 95 IYPIEAISPYSHKWTIKARCTSKSAIKTWHNRNSEGRLFSVNLLD-DSGEIRATGFNEQC 153
Query: 279 DQFYHQVEAGKIYLVSR-GSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
D Y G +Y +S ++ A+K F +L+ND E+ + ++V+ ED + +P+ +F
Sbjct: 154 DLLYDVFHEGGVYYISSPCRVQIAKKQFTNLNNDYELTFEKDTVVEKA-EDQSDVPQVRF 212
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVELTL 396
+F + D++ +E ++ +D+IGV+ + T ++ K ++ KR L L D SG SV LT+
Sbjct: 213 NFTTVGDLQSVEKDTTIDIIGVLKDVGETTQIVSKTTSKPYDKRELTLVDSSGFSVRLTI 272
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
WG+ L +S ++A K +VSDF G+ + +S+ + ++PD EAHRLK
Sbjct: 273 WGS----TALNFNATPES----VIAFKGVKVSDFGGRSLSLLSSGSMTVDPDIEEAHRLK 324
Query: 457 EWFEKEGKNTQSVS---ISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYI 513
W++ +G++ S +S S S R D KT++Q+++E LG E + ++ T++YI
Sbjct: 325 GWYDAQGRHETFASHATMSNASSSAKRLDHLKTIAQVREEQLGMSEDAVYFSLKGTVIYI 384
Query: 514 KCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLT 573
K DN CY AC CNKKV G+W C+ CD++ +YRYI+ + DHTG
Sbjct: 385 KQDNMCYPACL----SEGCNKKVTELDPGQWRCESCDKTHPRPEYRYIMLINVSDHTGQL 440
Query: 574 WVTAFQECAEEIMGMSAKDLYSLKYVDQNDEK-FGEVVRNATFTKYLFKLKVKEETFSDE 632
W++ F E +++MG SA L L+ QN EK G++ + A + F+ + K + F D+
Sbjct: 441 WLSCFDEVGKQLMGTSADQLMDLR---QNGEKAAGDIFQEANCRTWNFRCRAKLDHFGDQ 497
Query: 633 QRVKSTVVKAERYNYSSETRFILDLMD 659
QR++ V A+ NYS E ++ L++
Sbjct: 498 QRIRYQVSTAKPVNYSEEASRLMALIN 524
>gi|147778951|emb|CAN71402.1| hypothetical protein VITISV_006284 [Vitis vinifera]
Length = 634
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 156/479 (32%), Positives = 260/479 (54%), Gaps = 28/479 (5%)
Query: 204 YANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLD 263
+ N + + R+ P+ +LNPY G WTIK R+T KG +R Y N RG+G VF+ +L D
Sbjct: 163 HGNMAPAARMAMTRRVHPLVSLNPYQGNWTIKVRLTNKGTMRTYKNARGEGCVFNVELTD 222
Query: 264 SDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQ 323
DG +I+ T FN A +FY + + GK+Y +S+G+LK A K F + ND E+ L+ S V+
Sbjct: 223 EDGTQIQATMFNEAARKFYEKFQLGKVYYISKGALKVANKQFKTVQNDYEMTLNENSEVE 282
Query: 324 LCYEDDASIPRQQFHFRPIND----VEGME------NNSVVDLIGVVSYISPTASLMRK- 372
++ IP +F F I + V G E + + D+IGVV +SPT S+ RK
Sbjct: 283 EASNEETFIPEAKFKFVEIEELGPYVNGKELVGPLTSLLIPDVIGVVQSVSPTMSIRRKS 342
Query: 373 NGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNG 432
N KR + + D + ++V ++LW + + G L D FPI+A+K+ +V DF G
Sbjct: 343 NNDIVPKRDITIADKTKKTVVVSLWNDHATNVGQELLDNADK--FPIVAIKSLKVGDFQG 400
Query: 433 KVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADI------RKT 486
+ T+S + + + PD PE+ +L+ W++ EGK SI D + + R +
Sbjct: 401 VSLSTLSKSIVLVNPDTPESKKLRSWYDSEGKGASMASIGSDISPSSKGGVXSMYYDRVS 460
Query: 487 VSQIKDEGLGTKEKPDWITVSATIVYIKCD-NFCYTACPIMIGDRPCNKKVMNN-GDGRW 544
+S + ++KP + ++ A I +IK D Y AC + CNKKV + G G W
Sbjct: 461 LSHVTSNPSLGEDKPSFFSIRAYISFIKPDQTMWYRAC------KTCNKKVTDAIGSGYW 514
Query: 545 HCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDE 604
C+ C ++ EC RYI+ ++ D +G W++ F E AE + G SA +L LK + +
Sbjct: 515 -CEGCQKNDDECSLRYIMVVKVSDASGEAWLSLFNEQAERMFGCSADELDKLKSQEGEEN 573
Query: 605 KFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKS 663
F + ++ A + +LF++ V + + +E+R + T ++++E+R +L+ + K+K+
Sbjct: 574 LFQQKLKEAIWVPHLFRISVAQHEYMNEKRQRITARAVVPVDFAAESRLLLEEISKMKT 632
>gi|70989823|ref|XP_749761.1| replication protein A 70 kDa DNA-binding subunit [Aspergillus
fumigatus Af293]
gi|66847392|gb|EAL87723.1| replication protein A 70 kDa DNA-binding subunit [Aspergillus
fumigatus Af293]
Length = 529
Score = 276 bits (707), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 157/447 (35%), Positives = 256/447 (57%), Gaps = 23/447 (5%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI A++PY KWTIKAR T K ++ ++N+ +G++F +LLD D GEIR T FN
Sbjct: 95 IYPIEAISPYSHKWTIKARCTTKSAIKTWHNRNSEGRLFSVNLLD-DSGEIRATGFNEQC 153
Query: 279 DQFYHQVEAGKIYLVSR-GSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
D Y G +Y +S ++ A+K F +L+ND E+ + ++V+ ED + +P+ +F
Sbjct: 154 DLLYDVFHEGGVYYISSPCRVQIAKKQFTNLNNDYELTFEKDTVVEKA-EDQSDVPQVRF 212
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVELTL 396
+F + D++ +E ++ +D+IGV+ + T ++ K ++ KR L L D SG SV LT+
Sbjct: 213 NFTTVGDLQSVEKDTTIDIIGVLKDVGETTQIVSKTTSKPYDKRELTLVDSSGFSVRLTI 272
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
WG+ L +S ++A K +VSDF G+ + +S+ + ++PD EAHRLK
Sbjct: 273 WGS----TALNFNATPES----VIAFKGVKVSDFGGRSLSLLSSGSMTVDPDIEEAHRLK 324
Query: 457 EWFEKEGKNTQSVS---ISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYI 513
W++ +G++ S +S S S R D KT++Q+++E LG E + ++ T++YI
Sbjct: 325 GWYDAQGRHETFASHATMSNASSSAKRLDHLKTIAQVREEQLGMSEDAVYFSLKGTVIYI 384
Query: 514 KCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLT 573
K DN CY AC CNKKV G+W C+ CD++ +YRYI+ + DHTG
Sbjct: 385 KQDNMCYPACL----SEGCNKKVTELDPGQWRCESCDKTHPRPEYRYIMLINVSDHTGQL 440
Query: 574 WVTAFQECAEEIMGMSAKDLYSLKYVDQNDEK-FGEVVRNATFTKYLFKLKVKEETFSDE 632
W++ F E +++MG SA L L+ QN EK G++ + A + F+ + K + F D+
Sbjct: 441 WLSCFDEVGKQLMGTSADQLMDLR---QNGEKAAGDIFQEANCRTWNFRCRAKLDHFGDQ 497
Query: 633 QRVKSTVVKAERYNYSSETRFILDLMD 659
QR++ V A+ NYS E ++ L++
Sbjct: 498 QRIRYQVSTAKPVNYSEEASRLMALIN 524
>gi|297271569|ref|XP_002800290.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Macaca mulatta]
Length = 532
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 181/531 (34%), Positives = 272/531 (51%), Gaps = 73/531 (13%)
Query: 26 RFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSVVRLTKFTCNVIQN-RMIVIVMDLD 83
R+R+++SDG + MLATQ N LV L + ++ +F N +++ R +VI+M+L+
Sbjct: 69 RYRLLMSDGLNTLSSFMLATQLNPLVEQERLSSNCICQIHRFIVNTLKDGRRVVILMELE 128
Query: 84 VIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPA 143
V+ S E G GNP G Q S + P
Sbjct: 129 VL----------------KSAEAVGVKIGNPVPYNEGHG-QPQAAPPASAGSPAASSKPQ 171
Query: 144 ARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSM 203
+H S G+GS +++ S + P SN + Q
Sbjct: 172 QQHGSS-------------GAGSTVSKAYGASKTFGKAGGPSLSNTSGGTQ--------- 209
Query: 204 YANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLD 263
S+++PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D
Sbjct: 210 -------------SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD 256
Query: 264 SDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQ 323
+ GEIR T FN D+F+ +E K+Y S+G+LK A K F + ND E+ + + V
Sbjct: 257 -ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVM 315
Query: 324 LCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTL 382
C EDD +P QF F I+D+E +S+VD+IG+ SY T +R N E KR +
Sbjct: 316 PC-EDDRHLPTVQFDFTGIDDLESKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNI 374
Query: 383 HLRDMSGRSVELTLWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTT 441
+L D SG+ V TLWG + DG R P+LA+K RVSDF G+ + +S++
Sbjct: 375 YLMDTSGKVVTATLWGEDADKFDGSRQ---------PVLAIKGARVSDFGGRSLSVLSSS 425
Query: 442 QLFIEPDFPEAHRLKEWFEKEGKNTQSVSISR-DSLSVGRADIR-KTVSQIKDEGLGTKE 499
+ PD PEA++L+ WF+ EG+ VSIS S VG + KT+ ++K E LG +
Sbjct: 426 TIIANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGGNTNWKTLYEVKSENLGQGD 485
Query: 500 KPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCD 550
KPD+ + AT+VY++ +N Y ACP + CNKKV++ +G + C++CD
Sbjct: 486 KPDYFSSVATVVYLRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCD 532
>gi|358053972|dbj|GAA99937.1| hypothetical protein E5Q_06640 [Mixia osmundae IAM 14324]
Length = 605
Score = 276 bits (705), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 150/447 (33%), Positives = 247/447 (55%), Gaps = 20/447 (4%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI L+PY KWTIKARVT K ++RHY N +GDGKVF +LLD + GEIR T FN
Sbjct: 171 IYPIEGLSPYQNKWTIKARVTLKSDIRHYTNAKGDGKVFSVNLLD-ESGEIRATGFNDAV 229
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQ-KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
D ++ E GK+Y VS+ + ++ K +N +N+ EI + + V+LC D +P+ ++
Sbjct: 230 DNLFNVFEEGKVYYVSKARVNISKNKQYNPTNNEYEIMFERDTQVELC-TDTTDLPQVKY 288
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVELTL 396
+F ++D+ E N+++D++GVV + +S++ K + KR + L D S SV +TL
Sbjct: 289 NFVNLSDLTTQEANAMIDVLGVVKEVGELSSIVSKATSKQIPKREIVLIDQSEFSVRMTL 348
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
WG R + PI+A K +V DF G+ + +S++ + ++PD AH L
Sbjct: 349 WG--------RQAEQFSAPDQPIIAFKGVKVGDFGGRSLSMVSSSTMAVDPDIQPAHSLS 400
Query: 457 EWFEK--EGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIK 514
W + E K Q+ + + + KT++QIK+EGLG ++ PD + ATIVY+K
Sbjct: 401 GWMKAVGETKTFQTFKSTGGGAGGFKEEEAKTIAQIKEEGLGMQDTPDNFFLRATIVYVK 460
Query: 515 CDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTW 574
D+ Y ACP CNKKV +G + C++C + +RY++ + DHTG W
Sbjct: 461 KDSLSYPACP----KEGCNKKVTPTSEGSFRCEKCSEDFPAPQHRYVMSLSVLDHTGQLW 516
Query: 575 VTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQR 634
++AF + I+ SA D+ L+ D++++ F + + Y F + + ETF D R
Sbjct: 517 LSAFDDAGRLILDHSADDIERLR--DEDEQAFVGAIWRGSGKAYNFACRARTETFQDTSR 574
Query: 635 VKSTVVKAERYNYSSETRFILDLMDKL 661
V+ + +A +Y + + +++ ++ L
Sbjct: 575 VRYQINRATPVDYVAASAWLVKQIEGL 601
>gi|254585755|ref|XP_002498445.1| ZYRO0G10428p [Zygosaccharomyces rouxii]
gi|238941339|emb|CAR29512.1| ZYRO0G10428p [Zygosaccharomyces rouxii]
Length = 615
Score = 275 bits (704), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 149/470 (31%), Positives = 258/470 (54%), Gaps = 24/470 (5%)
Query: 192 TPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQR 251
TP+ P P+ +N + S+ I I L+PY WTIKARV+ KG+++ ++NQR
Sbjct: 153 TPK-PQQAKPNTGSNFPMGSGSQKSRPIFAIEQLSPYQNIWTIKARVSYKGDIKTWHNQR 211
Query: 252 GDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHND 311
GDGK+ + + LD+ GEIR T FN A +F ++ GK+Y +S+ L+PA+ F++L +
Sbjct: 212 GDGKLLNLNFLDT-SGEIRGTAFNDNATKFNEILQEGKVYFLSKARLQPAKPQFSNLPHP 270
Query: 312 LEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMR 371
E+ LD ++V+ C D + +P+ F F +N ++ E NS VD++G++ ++P L+
Sbjct: 271 YELMLDRDTVVEECL-DASDVPKTHFSFIKLNTIQNQEANSTVDVLGIIQTVNPHFELIS 329
Query: 372 KNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFN 431
+ G +R + + D S S+ + LW D L G ++A+K+ RV+DF
Sbjct: 330 RAGKRFDRRDITIVDDSEYSIAVGLWNQQAVDFNL------PEG--SVVAIKSVRVTDFG 381
Query: 432 GKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRD-------SLSVGRADIR 484
GK + T+ + P+ PEA+ LK WF+ G+N Q S+ + + V R
Sbjct: 382 GKSLSMGFTSTMIPNPEIPEAYSLKGWFDNTGRNLQYHSLKEEVNETNSTTNLVKYISER 441
Query: 485 KTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRW 544
T++ + + LG EK D+ ++ A + ++K DNF Y AC + CNKKV+ D W
Sbjct: 442 TTIATAQAQNLGRNEKGDFFSIKAAVSFLKVDNFAYPACL----NENCNKKVIEQPDQTW 497
Query: 545 HCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDE 604
C++CD + D+RY+L + D TG W+T F + A++++ + A +L LK D
Sbjct: 498 RCEKCDTNHPSPDWRYLLTISVLDETGQLWLTLFNDQAKQLLKVEASELVLLKESDPT-- 555
Query: 605 KFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFI 654
F ++ ++ +Y F+++ +E+ ++++ R++ TV NY +E F+
Sbjct: 556 AFSKITQSLQMNQYSFRIRAREDNYNNQSRIRYTVSNLHNINYKAEADFL 605
>gi|358334004|dbj|GAA32083.2| replication factor A1 [Clonorchis sinensis]
Length = 551
Score = 275 bits (704), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 157/430 (36%), Positives = 241/430 (56%), Gaps = 30/430 (6%)
Query: 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAV 277
++ PI +LNPY +WT++ARV+ K +R +N Q DGK+F+F L+D + GEIRVT FNA
Sbjct: 93 KVFPIQSLNPYQNRWTVRARVSQKSSIRTWNKQGRDGKLFNFTLVD-ESGEIRVTAFNAE 151
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDD-ASIPRQQ 336
D+F+ +E K Y V+R +LK A K FN +ND E+ L+ S + C ++D ++P
Sbjct: 152 VDKFFDMIEVNKAYYVTRANLKAANKQFNTTNNDYEMTLNADSQIIPCEDEDITALPETH 211
Query: 337 FHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVELT 395
F+F I ++ E S VD++GVV S ++M K + E +KR L L D S V LT
Sbjct: 212 FNFVSIGKLDTCEPGSFVDVVGVVHDTSEVQTIMAKASQRELRKRELGLVDSSRCLVRLT 271
Query: 396 LWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEP-DFPEAHR 454
LWG D+ D P++ VK +VSDFNG+ + ST+ + + P + PEA R
Sbjct: 272 LWG----DEAASF----DGSQHPVIVVKGAKVSDFNGRSLSVSSTSSVLVSPTNVPEAIR 323
Query: 455 LKEWFEKEGKNTQSVSISRDSLSVGRA-DIR------------KTVSQIKDEGLGTKEKP 501
LK W+E EG + + L G D+ + +K G+GT K
Sbjct: 324 LKGWYELEGHKVSFDTYKSEMLGSGSGGDLAGPGSTAGCLGGWNLIQDVKASGVGTHAKA 383
Query: 502 DWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYI 561
D+ T +T+V++K +NF Y ACP CNKKV++ G G + C++C + C +R +
Sbjct: 384 DFFTCKSTVVFLKKENFMYQACPT----EGCNKKVIDTGHGMYRCEKCGRETNHCKWRLL 439
Query: 562 LQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFK 621
L +I D TG W+T FQE AE+++G SA L ++K Q++ + + NA F ++F+
Sbjct: 440 LAAKIADLTGDLWITCFQEAAEQLLGQSADSLGAMKE-SQDEAQLERIFLNAVFNSWVFR 498
Query: 622 LKVKEETFSD 631
L+ K + ++D
Sbjct: 499 LRAKVDRYND 508
>gi|195444358|ref|XP_002069830.1| GK11360 [Drosophila willistoni]
gi|194165915|gb|EDW80816.1| GK11360 [Drosophila willistoni]
Length = 605
Score = 275 bits (703), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 154/444 (34%), Positives = 241/444 (54%), Gaps = 19/444 (4%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PIA+L+PY KW IKARVTAK +R ++N RG+GK+F DL+D + GEIR T F D+
Sbjct: 171 PIASLSPYQNKWVIKARVTAKTAIRTWSNPRGEGKLFSMDLMD-ESGEIRATAFKEQCDK 229
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
FY ++ +Y S+ LKPA K ++ L ND E+ +MVQ+C +++ SIP ++
Sbjct: 230 FYDLIQVDGVYYFSKCQLKPANKQYSQLKNDYEMTFTGETMVQMCEDEEDSIPEIKYDLV 289
Query: 341 PINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWGN 399
PI+ V MEN + VD IG+ + + R E +KR L L DMS ++ LTLWG
Sbjct: 290 PISQVSNMENKAAVDTIGICKEVGELQTFTSRTTNKEFKKRDLTLVDMSNSAISLTLWG- 348
Query: 400 FCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLF-IEPDFPEAHRLKEW 458
DD + D V P++ VK R+++FNG ++ + I PD PEAH+L+ W
Sbjct: 349 ---DDAVNF----DGHVQPVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGW 401
Query: 459 FEK-EGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDN 517
F+ G N ++ +R AD T+ ++ LG+ +KPD+ A + +K +N
Sbjct: 402 FDNGGGDNIANMVSARTGGGTFSADWL-TLKDARERNLGSGDKPDYFQCKAVVHIVKQEN 460
Query: 518 FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTA 577
Y ACP CNKKV++ G+ R+ C+RC+Q YR ++ I D T WVT
Sbjct: 461 AFYKACP----QAECNKKVVDEGNDRYRCERCNQDFPNFKYRLLINLSIGDWTSNRWVTC 516
Query: 578 FQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKS 637
F E E+++ +A+++ + ++ + K ++ F+ ++FKL+ K E + D R K
Sbjct: 517 FSEIGEQLLKHTAQEVG--EALENDPPKAEQMFSGMNFSAHIFKLRCKNEVYGDMTRNKL 574
Query: 638 TVVKAERYNYSSETRFILDLMDKL 661
TV NY + ++ + +L
Sbjct: 575 TVQSVSPINYKDYNKHLIKELQQL 598
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 62/116 (53%), Gaps = 14/116 (12%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSR-SQQGMLATQRNELVTSGLLQIGSV 60
PVLQ++ +K + S + + R+R+++SDG + MLA+Q N L +G L+ ++
Sbjct: 20 PVLQILAIKRINSNVESE------RYRILISDGMYFNSYAMLASQLNHLHQAGDLEEFTI 73
Query: 61 VRLTKFTCNVIQN----RMIVIVMDLDVII---DKCDPIGKPVPAQRPSSNEQPGS 109
VRL K+ +++ + ++I+ +L V+ ++ IG+PV + P +
Sbjct: 74 VRLDKYMTSLVGKEGVGKRVLIINELSVLKSGSEQKSKIGEPVTYENAKKTPAPAA 129
>gi|448514363|ref|XP_003867094.1| Rfa1 DNA replication factor A [Candida orthopsilosis Co 90-125]
gi|380351432|emb|CCG21656.1| Rfa1 DNA replication factor A [Candida orthopsilosis Co 90-125]
Length = 628
Score = 275 bits (703), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 152/460 (33%), Positives = 264/460 (57%), Gaps = 27/460 (5%)
Query: 216 PSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFN 275
P+RI PI ++PY WTIKARV+ KGELR ++N +G+GKVF + LD + EI+ + FN
Sbjct: 180 PARISPIETISPYQNTWTIKARVSYKGELRSWSNAKGEGKVFSVNFLD-ESDEIKASAFN 238
Query: 276 AVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQ 335
A++ Y+ +E GK+Y +S+ + A+K FN+L + E+ L+ + + C+ D++ +P+
Sbjct: 239 ESAERAYNLLEEGKVYFISKAKVGAARKKFNNLTHPYELTLEKDTEITECF-DESDVPKL 297
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVEL 394
F+F ++ V+ +E N+++D++G + ++P + K+ G +R + + D +G +V++
Sbjct: 298 NFNFVKLDKVQNLEPNAIIDVLGALKIVNPPFQITAKSTGKAFDRRDITIVDETGFAVDV 357
Query: 395 TLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
LW N D + G ++A K +VSDFNG+ + + P PE+++
Sbjct: 358 GLWNNTAVD------FSVEEGT--VIAFKGCKVSDFNGRSLSLTQAGSIVPNPGTPESYQ 409
Query: 455 LKEWFEKEG--KNTQSVSISRD-SLSVGRADIRKTVSQIKDEGLGT-KEKPDWITVSATI 510
LK WF+ G +N +S+ + S S+ R RKT++Q+++E E+ + T+ A
Sbjct: 410 LKGWFDNIGVKENFKSMKTETNASSSIDRLANRKTIAQVEEENNNLDSEQSGYFTIKACF 469
Query: 511 VYIKCDNFCYTACPIMIGDR--------PCNKKVMNNGDGRWHCDRCDQSVVECDYRYIL 562
+ K +NF Y AC +I + PCNKK+ D +W C+RCD S E YRYIL
Sbjct: 470 SFTKPENFAYPACTNIIANTTDSTKPGLPCNKKLAPVND-KWRCERCDLSYDEPTYRYIL 528
Query: 563 QFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEK-FGEVVRNATFTKYLFK 621
I D TG W T F E A++++G+ A +L +K ++N++ E + A F +Y F+
Sbjct: 529 YISITDATGQLWTTLFDEQAKKLLGIDANEL--MKMSNENEKMVVAEYISRAYFKEYNFR 586
Query: 622 LKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
L+VK++TF+D+ +++ V +Y++E F+ +D L
Sbjct: 587 LRVKQDTFNDQLKLRYQCVGLSDIDYNTECEFLCSELDSL 626
>gi|303316318|ref|XP_003068161.1| replication factor-A protein 1 family protein [Coccidioides
posadasii C735 delta SOWgp]
gi|240107842|gb|EER26016.1| replication factor-A protein 1 family protein [Coccidioides
posadasii C735 delta SOWgp]
Length = 605
Score = 275 bits (702), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 158/449 (35%), Positives = 256/449 (57%), Gaps = 24/449 (5%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
+ I PI AL+PY KWTIKAR T K ++ + N+ G+G++F +LLD D GEIR T F
Sbjct: 165 ANIYPIEALSPYSHKWTIKARCTNKSAIKKWYNRNGEGRLFSVNLLD-DSGEIRATAFKE 223
Query: 277 VADQFYHQVEAGKIYLVSRGS-LKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQ 335
D Y E G +Y +S ++ A++ F++++ND E+ + ++++ ED +P+
Sbjct: 224 QCDLLYPLFEEGSVYYISSPCRVQMAKREFSNVNNDYELTFERDTVIEKA-EDHEDVPQM 282
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVEL 394
+F+F I + +E + +D++GV+ + P A + K+ G KR L L D +G SV L
Sbjct: 283 RFNFTSIGHLHSVEKGTTIDVLGVLKTVEPVAEVPSKSTGKRYTKRELMLVDDTGYSVPL 342
Query: 395 TLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
T+WG M DS ++A K +VSDF G+ + +++ + +PD EAH+
Sbjct: 343 TIWGAMATS----FDVMPDS----VVAFKGVKVSDFGGRSLSLLNSGTITSDPDIEEAHK 394
Query: 455 LKEWFEKEGKNTQ--SVSISRDS-LSVG-RADIRKTVSQIKDEGLGTKEKPDWITVSATI 510
LK W++ +GK Q + ++S ++ +S G R DI K + +++D LG EKPD+ ++ AT+
Sbjct: 395 LKGWYDAQGKFDQFATHALSENAAISTGTRQDIYKAIVEVRDNQLGMTEKPDYFSLRATV 454
Query: 511 VYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHT 570
V+IK D CY AC + +R CNKKV+ +W C+ C++S + +YRYIL + DHT
Sbjct: 455 VFIKQDTICYPAC---VQER-CNKKVVQVDSEQWLCEHCEKSSLRPEYRYILSANVSDHT 510
Query: 571 GLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFS 630
G W+ F E IMGM A L LK + +D+ E + +AT + K K K + F
Sbjct: 511 GQLWLNCFDEVGRAIMGMPANVLMELK--ESDDKAASEAILHATCQMWNLKCKAKLDNFQ 568
Query: 631 DEQRVKSTVVKAERYNYSSETRFILDLMD 659
++ R + V+ A N+S E+ ++ L+D
Sbjct: 569 NQPRYQ--VLGASPINFSHESSRLVSLID 595
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++Q + +KL+ S R+R V SD S Q MLA+ N LV +G L+ G V
Sbjct: 24 PIVQCLHVKLLSSPSGGPD-----RYRAVFSDISNFVQTMLASSLNNLVNNGALRRGCFV 78
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIID--KCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
+L F N ++ + I+IV+DLDV+ D +C+ IG P P + + + + T
Sbjct: 79 QLKSFQANFVKGKRILIVLDLDVLEDLGECERIGDPKPLETKVAEVEKPTPTAISSDGFY 138
Query: 120 GVSLQH 125
GV +H
Sbjct: 139 GVVSEH 144
>gi|444321919|ref|XP_004181615.1| hypothetical protein TBLA_0G01500 [Tetrapisispora blattae CBS 6284]
gi|387514660|emb|CCH62096.1| hypothetical protein TBLA_0G01500 [Tetrapisispora blattae CBS 6284]
Length = 629
Score = 275 bits (702), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 144/454 (31%), Positives = 252/454 (55%), Gaps = 31/454 (6%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I I L+PY WTIKARV+ KG+++ ++NQRG+GK+ +F+LLD+ GEIR TCFN +
Sbjct: 191 IFAIEQLSPYQNVWTIKARVSFKGDVKTWHNQRGEGKLLNFNLLDT-SGEIRATCFNQLV 249
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDAS---IPRQ 335
D++ ++ GK+Y +S+ L+P++ F++L + E+ ++ ++++ C +D S +P+
Sbjct: 250 DKYNETIQEGKVYFISKARLQPSKPKFSNLSHPYELSIENDTIIEEC--NDVSTNDVPKT 307
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F+F ++ ++ +E NS +D++G + ++P L + G + +R + + D +G +++
Sbjct: 308 NFNFTKLDSIQNLETNSTIDVLGAIKTVNPHFELTSRAGKKFDRRDIEIVDETGFIIKVG 367
Query: 396 LWGNFCNDDGLRLQHMCDSGV--FPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAH 453
LW Q D V I+A+K RV+DF GK + ++ L PD EA+
Sbjct: 368 LWN----------QQAIDFNVPEGSIVAIKGVRVTDFGGKSLSMGFSSTLTANPDISEAY 417
Query: 454 RLKEWFEKEGKNTQSVSISRDS----LSVGRADI---RKTVSQIKDEGLGTKEKPDWITV 506
LK W++ NT S + +S G I R T+++ K++ LG EK D+ +V
Sbjct: 418 SLKGWYDANRNNTTFTSYNSESGGPVSGEGLKKIISQRITIAKAKNDNLGRSEKGDFFSV 477
Query: 507 SATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQI 566
A + ++K DNF Y AC CNKKV+ DG W C++CD S +RY+L I
Sbjct: 478 KAAVSFLKVDNFAYPACST----EGCNKKVIEQTDGTWRCEKCDVSFPSPKWRYMLTISI 533
Query: 567 QDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKE 626
D T W+T F E A++++G+ A L K + N E+F ++ + F+++ +E
Sbjct: 534 MDETDQIWLTLFNEQAQQLIGLDASSLMETK--ENNPEEFNKITQQIQMKTLDFRIRARE 591
Query: 627 ETFSDEQRVKSTVVKAERYNYSSETRFILDLMDK 660
+ ++D+ R++ TV Y SE ++ + + K
Sbjct: 592 DNYNDQTRIRYTVSNIHELKYKSEADYLAEELSK 625
>gi|449015647|dbj|BAM79049.1| probable replication protein A [Cyanidioschyzon merolae strain 10D]
Length = 663
Score = 275 bits (702), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 208/681 (30%), Positives = 315/681 (46%), Gaps = 94/681 (13%)
Query: 2 PVLQVMDLKLVVSK--QQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGS 59
PVLQV +++ + QQ Q R+R+VLSDG +L Q N V SG L GS
Sbjct: 23 PVLQVQEVRKLQPSVAQQAQATTSGDRYRVVLSDGEHLLHCVLMAQLNSFVLSGDLDKGS 82
Query: 60 VVRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
+VRL + N +Q+R++ I+++L+++ E+ GNP++
Sbjct: 83 IVRLVDYQPNKVQDRVVAIIINLEIL-------------------ERNAPTVGNPKAFDP 123
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
S +T +S D D+ AR + V AG P P
Sbjct: 124 RAS----TDTALSSHSFDDDSTETARK----------RQAVSAG--------VEHKPPPP 161
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEV---PSRIIPIAALNPYMGKWTIKA 236
+ P P + ++GL E P I+A NPY I+
Sbjct: 162 RVTPGAPPVSVPPPVKSAAAGPVVRFDQGLGSSVETLAPPGGYTKISAANPYQNNVIIRG 221
Query: 237 RVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG 296
RV KGELR Y+N +G+GK+F F++ D + G +RVT F A + + ++E IY ++
Sbjct: 222 RVVQKGELRTYSNAKGEGKLFSFEIAD-ETGNMRVTAFREKALEAHQRIELNGIYSIAGA 280
Query: 297 SLKPAQKNFNHLHNDLEIFLDMTSMV-QLCYEDDASIPRQQFHFRPINDVEGMENNSVVD 355
SLKPA FNH + E+ LD S++ QL DD I R F F I D+ + VVD
Sbjct: 281 SLKPANAQFNHTGHSFEMILDQNSVITQL--PDDNMIQRVSFDFVKIRDLMDVPVGKVVD 338
Query: 356 LIGVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVELTLWGN-----FCNDDGLRLQ 409
+IG+ I + K G KR + L D +G SV LT+WG F N+D
Sbjct: 339 VIGIALDIGEVGEISSKTTGLPVAKREVKLIDDTGCSVALTIWGERARSLFSNEDDR--- 395
Query: 410 HMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSV 469
P+L VK+ + DFNG + T ++ + + P+ EA L+ WF+ EG +
Sbjct: 396 --------PVLLVKSAKRGDFNGVSLSTTPSSHVEVNPNIREAFELRGWFDSEGHGAEFQ 447
Query: 470 SISRDSLSVGRADI------RKTVSQIKDEGLGTKEKP------DWITVSATIVYIKCDN 517
+ L R + RKT +Q++ E +G E P + TV ATI +IK D
Sbjct: 448 DLGGTPLGGARTESRIRNSERKTFAQVQSEHIG--EDPHSAPGASYYTVRATISHIKQDE 505
Query: 518 F---CYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTW 574
Y +CP C KKV+ + C+RCD+ +V+ RYI Q D TG W
Sbjct: 506 ERPPWYLSCP------DCKKKVIEESPDMYRCERCDK-LVKPTPRYIFSIQAMDATGSHW 558
Query: 575 VTAFQECAEEIM-GMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQ 633
+ + E I G SA++L +K D E++ ++ A F ++LF+++V+ +T+ DE
Sbjct: 559 LNCYDEVGPIIFGGYSAEELKRIKETDS--EEYQRILEQAHFGEFLFRVRVRSDTYQDEM 616
Query: 634 RVKSTVVKAERYNYSSETRFI 654
+ VV AE+ NY SE + +
Sbjct: 617 TFRHMVVGAEKINYESEMKML 637
>gi|194764875|ref|XP_001964553.1| GF23244 [Drosophila ananassae]
gi|190614825|gb|EDV30349.1| GF23244 [Drosophila ananassae]
Length = 603
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 151/444 (34%), Positives = 246/444 (55%), Gaps = 18/444 (4%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PI++L+PY KW IKARVT+K +R ++N RG+GK+F DL+D + GEIR T F D+
Sbjct: 168 PISSLSPYQNKWVIKARVTSKTAIRTWSNARGEGKLFSMDLMD-ESGEIRATAFKEQCDK 226
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE-DDASIPRQQFHF 339
FY ++ +Y S+ LKPA K ++ L N E+ ++VQLC + DD +IP +++
Sbjct: 227 FYDLIQVDSVYFFSKCQLKPANKQYSQLDNAYEMTFTGETIVQLCEDADDGAIPDIKYNL 286
Query: 340 RPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWG 398
PI++V GMEN + VD IG+ + S + R E +KR L L DMS ++ LTLWG
Sbjct: 287 VPISEVSGMENKAAVDTIGICKEVGELQSFVSRTTNKEFKKRDLTLVDMSNSAINLTLWG 346
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLF-IEPDFPEAHRLKE 457
DD + D V P++ VK R+++FNG ++ + I PD PEAH+L+
Sbjct: 347 ----DDAVNF----DGHVQPVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRG 398
Query: 458 WFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDN 517
WF+ G + + +S + + T ++ LG+ +KPD+ A + +K +N
Sbjct: 399 WFDNGGGDNIANMVSARTGGGNFSTDWMTFKDARERNLGSGDKPDYFQCKAVVHIVKQEN 458
Query: 518 FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTA 577
Y ACP CNKKV++ G+ ++ C+RC+ YR ++ I D T WVT
Sbjct: 459 AFYRACP----QTDCNKKVVDEGNDQYRCERCNALYPNFKYRLLVNMSIGDWTSNRWVTC 514
Query: 578 FQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKS 637
F E E+++G +++++ + ++ + K ++ + FT ++FKL+ K E++ D R K
Sbjct: 515 FNEIGEQLLGHTSQEVG--EALENDAAKAEQIFSSLNFTSHIFKLRCKNESYGDTTRNKL 572
Query: 638 TVVKAERYNYSSETRFILDLMDKL 661
TV A N+ +++L + +L
Sbjct: 573 TVQSAAPINHKEYNKYLLKELKEL 596
Score = 45.8 bits (107), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 60/112 (53%), Gaps = 14/112 (12%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSR-SQQGMLATQRNELVTSGLLQIGSV 60
PVLQ++ +K + S + R+R+++SDG + MLA+Q NE+ G L+ ++
Sbjct: 23 PVLQILAIKKINSNADSE------RYRILISDGKYFNSYAMLASQLNEMQHKGQLEEFTI 76
Query: 61 VRLTKFTCNVI----QNRMIVIVMDLDVIIDKCD---PIGKPVPAQRPSSNE 105
V+L K+ +++ + ++I+ +L V+ D IG+PV + S +
Sbjct: 77 VQLDKYVTSMVGKDGAGKRVLIISELTVLNPGADVKAKIGEPVTYENASKQD 128
>gi|119188411|ref|XP_001244812.1| replication factor-A protein 1 [Coccidioides immitis RS]
Length = 605
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 158/449 (35%), Positives = 256/449 (57%), Gaps = 24/449 (5%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
+ I PI AL+PY KWTIKAR T K ++ + N+ G+G++F +LLD D GEIR T F
Sbjct: 165 ANIYPIEALSPYSHKWTIKARCTNKSAIKKWYNRNGEGRLFSVNLLD-DSGEIRATAFKE 223
Query: 277 VADQFYHQVEAGKIYLVSRGS-LKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQ 335
D Y E G +Y +S ++ A++ F++++ND E+ + ++++ ED +P+
Sbjct: 224 QCDLLYPLFEEGSVYYISSPCRVQMAKREFSNVNNDYELTFERDTVIERA-EDHEDVPQM 282
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVEL 394
+F+F I + +E + +D++GV+ + P A + K+ G KR L L D +G SV L
Sbjct: 283 RFNFTSIGHLHSVEKGTTIDVLGVLKTVEPVAEVPSKSTGKRYTKRELMLVDDTGYSVPL 342
Query: 395 TLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
T+WG M DS ++A K +VSDF G+ + +++ + +PD EAH+
Sbjct: 343 TIWGGMATS----FDVMPDS----VVAFKGVKVSDFGGRSLSLLNSGTITSDPDIEEAHK 394
Query: 455 LKEWFEKEGKNTQ--SVSISRDS-LSVG-RADIRKTVSQIKDEGLGTKEKPDWITVSATI 510
LK W++ +GK Q + ++S ++ +S G R DI K + +++D LG EKPD+ ++ AT+
Sbjct: 395 LKGWYDAQGKFDQFATHALSENAAISTGTRQDIYKAIVEVRDNQLGMTEKPDYFSLRATV 454
Query: 511 VYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHT 570
V+IK D CY AC + +R CNKKV+ +W C+ C++S + +YRYIL + DHT
Sbjct: 455 VFIKQDTICYPAC---VQER-CNKKVVQVDPEQWLCEHCEKSSLRPEYRYILSANVSDHT 510
Query: 571 GLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFS 630
G W+ F E IMGM A L LK + +D+ E + +AT + K K K + F
Sbjct: 511 GQLWLNCFDEVGRAIMGMPANVLMELK--ESDDKAASEAILHATCQMWNLKCKAKLDNFQ 568
Query: 631 DEQRVKSTVVKAERYNYSSETRFILDLMD 659
++ R + V+ A N+S E+ ++ L+D
Sbjct: 569 NQPRYQ--VLGASPINFSHESSRLVSLID 595
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 7/126 (5%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++Q + +KL+ S R+R V SD S Q MLA+ N+LV +G L+ G V
Sbjct: 24 PIVQCLHVKLLSSPSGGPD-----RYRAVFSDISNFVQTMLASSLNDLVNNGALRRGCFV 78
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIID--KCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
+L F N ++ + I+IV+DLDV+ D +C+ IG P P + + + + T
Sbjct: 79 QLKSFQANFVKGKRILIVLDLDVLEDLGECERIGDPKPLETKVAEVEKPTPTAISSDGFY 138
Query: 120 GVSLQH 125
GV +H
Sbjct: 139 GVVSEH 144
>gi|392595534|gb|EIW84857.1| replication factor-A protein 1 [Coniophora puteana RWD-64-598 SS2]
Length = 598
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 147/447 (32%), Positives = 257/447 (57%), Gaps = 26/447 (5%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
+ PI L+PY WTIKARVT K E+R+++N RG+GK+F+ L+D + GEIR T FNAV
Sbjct: 165 VFPIEGLSPYQNNWTIKARVTQKSEVRNWSNARGEGKLFNVTLMD-ESGEIRATGFNAVV 223
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D+ Y ++E GK+Y VS+ + A+K F+++ ND E+ L+ + V+ C D ++P +++
Sbjct: 224 DELYPKLEEGKVYYVSKARVNLAKKKFSNIQNDYELSLEKNTEVEECL-DTTNLPTIKYN 282
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
F + ++E + + D+IG+V P + + K KR L + D S SV +TLWG
Sbjct: 283 FISLGELESLAKDVNCDVIGIVKEAGPLSEITSKTNRTIPKRELTIVDKSQFSVRMTLWG 342
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEW 458
+ + + P++A K +V D+ G+ + +S++ + I PD PEAH L+ W
Sbjct: 343 --------KQAELYSAEDQPVIAFKGVKVGDYGGRSLSMMSSSLMSISPDIPEAHALRGW 394
Query: 459 FEKEGKNTQSVSISRDSLSVG-------RADIRKTVSQIKDEGLGTKEKPDWITVSATIV 511
++ G N ++ + ++ +G R+++R +S +KD LG +K D+ + A+I+
Sbjct: 395 YDGIG-NEKTFTAQSSAVPLGASFGGFNRSELRH-ISDVKDSQLGMGDKADFFSTRASIM 452
Query: 512 YIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTG 571
+IK +N Y AC ++ CNKKV + GDG W C++CD++ +YRYI+ + D +G
Sbjct: 453 HIKTENIAYPAC----ANQGCNKKVTDVGDG-WRCEKCDKTFERPEYRYIVSIAVADWSG 507
Query: 572 LTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSD 631
W+ F + E I G SA ++ +K D+ +++ V+ AT + F + K++T++D
Sbjct: 508 QAWLQGFNDAGEAIFGKSADEVMEIKNCDE--QEYNAVMAQATGVTFNFGCRAKQDTYND 565
Query: 632 EQRVKSTVVKAERYNYSSETRFILDLM 658
RV+ + K +Y E + +++L+
Sbjct: 566 NTRVRYGISKILSVDYREEAKHLVELL 592
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 4 LQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRL 63
+Q++ +K V Q + R+R+++SDG Q MLAT+ N+LV + L +VV +
Sbjct: 29 VQLLSIKKV--SQSANSSNTVDRYRLIISDGVHFIQAMLATKLNDLVANNELGKNTVVII 86
Query: 64 TKFTCNVIQNRMIVIVMDLDVIIDKCDPIG 93
+ TCN +Q + ++IV++L V+ + IG
Sbjct: 87 DQLTCNFVQEKRLIIVLNLQVLTRDEEKIG 116
>gi|444516397|gb|ELV11146.1| Replication protein A 70 kDa DNA-binding subunit [Tupaia chinensis]
Length = 474
Score = 274 bits (700), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 160/452 (35%), Positives = 244/452 (53%), Gaps = 66/452 (14%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
S+++PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D + GEIR T FN
Sbjct: 67 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFAIELVD-ETGEIRATAFNE 125
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
D+F+ +E K+Y S+G+LK A K F + ND E+ + + V C EDD +P Q
Sbjct: 126 QVDKFFPLIEVNKVYYFSKGTLKIANKQFTTVKNDYEMTFNNETSVMPC-EDDHHLPTVQ 184
Query: 337 FHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F I+++E +S+VD+IGV SY T ++ E KR ++L D SG+ V T
Sbjct: 185 FDFTKIDELESKSKDSLVDIIGVCKSYEDATKITVKSTNREVSKRNIYLMDTSGKVVTTT 244
Query: 396 LWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
LWG + DG R P+LAVK RVSDF G+ + +S++ + + PD PEA++
Sbjct: 245 LWGEDADKFDGSRQ---------PVLAVKGARVSDFGGRSLSVLSSSTVIMNPDIPEAYK 295
Query: 455 LKEWFEKEGKNTQSVSIS--RDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVY 512
L+ WF+ EG+ VSIS + +G KT+ ++K E LG +K D+ + AT+VY
Sbjct: 296 LRGWFDSEGQALDGVSISDLKSGGGIGSNTNWKTLYEVKSENLGQGDKADYFSSVATVVY 355
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
++ +N Y ACP ++ CNKKV++ +G + C++CD YR IL
Sbjct: 356 LRKENCMYQACP----NQDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMIL---------- 401
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFS-- 630
N++ F EV +NA F + FK++VK ET++
Sbjct: 402 ----------------------------SNEQAFEEVFQNANFRSFTFKIRVKLETYNVQ 433
Query: 631 -------DEQRVKSTVVKAERYNYSSETRFIL 655
DE R+K+TV+ + +Y R ++
Sbjct: 434 TAFLFSKDESRIKATVMDVKPVDYREYGRRLI 465
>gi|367015496|ref|XP_003682247.1| hypothetical protein TDEL_0F02250 [Torulaspora delbrueckii]
gi|359749909|emb|CCE93036.1| hypothetical protein TDEL_0F02250 [Torulaspora delbrueckii]
Length = 616
Score = 274 bits (700), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 141/455 (30%), Positives = 262/455 (57%), Gaps = 24/455 (5%)
Query: 210 VGKSEVPSR-IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGE 268
+G S SR I I L+PY WTIKARV+ KG+++ ++NQ+G+GK+F+ + LD+ GE
Sbjct: 170 LGSSSQKSRPIFAIEQLSPYQNMWTIKARVSYKGDIKTWHNQKGEGKLFNVNFLDT-SGE 228
Query: 269 IRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYED 328
IR T FN +A +F ++ G++Y +S+ L+PA+ F +L + E+ +D ++V+ C+ D
Sbjct: 229 IRATAFNEMATKFNEILQEGRVYYISKARLQPAKPQFTNLTHPYELSMDRDTVVEECF-D 287
Query: 329 DASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMS 388
++++P+ F F +N + E NS VD++G++ ++P L + G + +R + + D S
Sbjct: 288 ESNVPKTHFSFTKLNAIPNQEANSTVDVLGIIQTVNPQFELTSRAGKKFDRRDIDIVDDS 347
Query: 389 GRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPD 448
G S+ + LW D L ++A K RV+DF GK + T+ + P+
Sbjct: 348 GYSITVGLWNQQAVDFNL--------AEGSVVAFKGIRVTDFGGKSLSMGFTSTMIPNPE 399
Query: 449 FPEAHRLKEWFEKEGKNTQSVSISRDSLSVGR-ADIRKTVSQ------IKDEGLGTKEKP 501
PEA+ LK W++++G + S+ +++ + A++ K +SQ ++E LG EK
Sbjct: 400 VPEAYALKGWYDQKGHSENFSSLKQEAGAASSGANLAKFISQRISIATAQNENLGRSEKG 459
Query: 502 DWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYI 561
D+ ++ + ++K DNF Y AC + CNKKV+ DG W C++CD + D+RY+
Sbjct: 460 DFFSIKGAVNFLKVDNFAYPAC----SNENCNKKVIEESDGTWRCEKCDTNNQAPDWRYM 515
Query: 562 LQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFK 621
L + D TG WVT F + A++++G+ A +L ++K D + + F + ++ +Y F+
Sbjct: 516 LTLSVLDETGQMWVTVFNDQAKQLLGIGANELMAMK--DNDADLFTKTIQGIQMNQYDFR 573
Query: 622 LKVKEETFSDEQRVKSTVVKAERYNYSSETRFILD 656
++ +E+ ++++ R++ T+ N+ +E ++ +
Sbjct: 574 IRAREDNYNNQSRIRYTISNLHLLNFKAEADYLAE 608
>gi|320037894|gb|EFW19830.1| replication factor-A protein 1 [Coccidioides posadasii str.
Silveira]
Length = 605
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 157/449 (34%), Positives = 256/449 (57%), Gaps = 24/449 (5%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
+ I PI AL+PY KWTIKAR T K ++ + N+ G+G++F +LLD D GEIR T F
Sbjct: 165 ANIYPIEALSPYSHKWTIKARCTNKSAIKKWYNRNGEGRLFSVNLLD-DSGEIRATAFKE 223
Query: 277 VADQFYHQVEAGKIYLVSRGS-LKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQ 335
D Y E G +Y +S ++ A++ F++++ND E+ + ++++ ED +P+
Sbjct: 224 QCDLLYPLFEEGSVYYISSPCRVQMAKREFSNVNNDYELTFERDTVIEKA-EDHEDVPQM 282
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVEL 394
+F+F I + +E + +D++GV+ + P A + K+ G KR L L D +G SV L
Sbjct: 283 RFNFTSIGHLHSVEKGTTIDVLGVLKTVEPVAEVPSKSTGKRYTKRELMLVDDTGYSVPL 342
Query: 395 TLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
T+WG M DS ++A K +VSDF G+ + +++ + +PD EAH+
Sbjct: 343 TIWGAMATS----FDVMPDS----VVAFKGVKVSDFGGRSLSLLNSGTITSDPDIEEAHK 394
Query: 455 LKEWFEKEGKNTQ--SVSISRDS-LSVG-RADIRKTVSQIKDEGLGTKEKPDWITVSATI 510
LK W++ +GK Q + ++S ++ +S G R DI K + +++D LG EKPD+ ++ AT+
Sbjct: 395 LKGWYDAQGKFDQFATHALSENAAISTGTRQDIYKAIVEVRDNQLGMTEKPDYFSLRATV 454
Query: 511 VYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHT 570
V+IK D CY AC + +R CNKKV+ +W C+ C++S + +YRYIL + DHT
Sbjct: 455 VFIKQDTICYPAC---VQER-CNKKVVQVDSEQWLCEHCEKSSLRPEYRYILSANVSDHT 510
Query: 571 GLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFS 630
G W+ F E IMGM A L LK + +D+ E + +AT + K K K + F
Sbjct: 511 GQLWLNCFDEVGRAIMGMPANVLMELK--ESDDKAASEAILHATCQMWNLKCKAKLDNFQ 568
Query: 631 DEQRVKSTVVKAERYNYSSETRFILDLMD 659
++ R + V+ A N+S E+ ++ L++
Sbjct: 569 NQPRYQ--VLGASPINFSHESSRLVSLIE 595
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++Q + +KL+ S R+R V SD S Q MLA+ N LV +G L+ G V
Sbjct: 24 PIVQCLHVKLLSSPSGGPD-----RYRAVFSDISNFVQTMLASSLNNLVNNGALRRGCFV 78
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIID--KCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
+L F N ++ + I+IV+DLDV+ D +C+ IG P P + + + + T
Sbjct: 79 QLKSFQANFVKGKRILIVLDLDVLEDLGECERIGDPKPLETKVAEVEKPTPTAISSDGFY 138
Query: 120 GVSLQH 125
GV +H
Sbjct: 139 GVVSEH 144
>gi|45198511|ref|NP_985540.1| AFL008Wp [Ashbya gossypii ATCC 10895]
gi|44984462|gb|AAS53364.1| AFL008Wp [Ashbya gossypii ATCC 10895]
Length = 694
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 148/439 (33%), Positives = 246/439 (56%), Gaps = 19/439 (4%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I I L+PY WTIKARV+ KG+++ ++NQRG+GK+F+ + LD+ GEIR T FN A
Sbjct: 262 IFAIEQLSPYQNMWTIKARVSFKGDIKTWHNQRGEGKLFNVNFLDT-SGEIRATAFNDNA 320
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
+++ ++ GK+Y VS+ ++PA+ F++L + E+ LD ++V+ C+E A +P+ F
Sbjct: 321 LKYFEILQEGKVYYVSKARIQPAKPQFSNLKHPYELQLDRDTVVEECFE-AADVPKMNFS 379
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
F ++ + ME NS VD++GV+ ++P ++ K+G + +R + + D +G SV + LW
Sbjct: 380 FIKLDQISSMEANSNVDILGVIQTVNPPFEMIAKSGKKFNRRDIVIVDETGYSVNVGLWN 439
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEW 458
D L G ++AVK+ RV+DF GK + ++ L PD PEA+ +K W
Sbjct: 440 EQAVDFNL------PEG--SVIAVKSVRVTDFGGKSLSMGFSSTLHPNPDIPEAYAIKGW 491
Query: 459 FEKEGKNTQSVSISR---DSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKC 515
+ +G +T S+ D S+ R T+ + KD+ LG +K D+ V + ++K
Sbjct: 492 YSSKGTSTTFHSLKMEGGDRNSMRYVADRITIGKAKDDNLGRSDKGDYFNVRGAVNFLKV 551
Query: 516 DNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWV 575
DNF Y AC C KKV+ DG W C++C +RY+L I D T W+
Sbjct: 552 DNFAYPAC----STEGCQKKVIEQTDGTWRCEKCQVDHPAPKWRYMLTASILDETSQIWI 607
Query: 576 TAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRV 635
T F + AE+++ M A L LK D EKF +V ++ +Y F+++ +E+T+++E R+
Sbjct: 608 TLFNDQAEKLLSMDANTLTELKNTDP--EKFQKVTQSVQMNEYDFRVRAREDTYNEETRI 665
Query: 636 KSTVVKAERYNYSSETRFI 654
+ TV + E ++
Sbjct: 666 RYTVTNLYPLRWKVEADYL 684
>gi|374108769|gb|AEY97675.1| FAFL008Wp [Ashbya gossypii FDAG1]
Length = 694
Score = 273 bits (697), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 148/439 (33%), Positives = 246/439 (56%), Gaps = 19/439 (4%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I I L+PY WTIKARV+ KG+++ ++NQRG+GK+F+ + LD+ GEIR T FN A
Sbjct: 262 IFAIEQLSPYQNMWTIKARVSFKGDIKTWHNQRGEGKLFNVNFLDT-SGEIRATAFNDNA 320
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
+++ ++ GK+Y VS+ ++PA+ F++L + E+ LD ++V+ C+E A +P+ F
Sbjct: 321 LKYFEILQEGKVYYVSKARIQPAKPQFSNLKHPYELQLDRDTVVEECFE-AADVPKMNFS 379
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
F ++ + ME NS VD++GV+ ++P ++ K+G + +R + + D +G SV + LW
Sbjct: 380 FIKLDQISSMEANSNVDILGVIQTVNPPFEMIAKSGKKFNRRDIVIVDETGYSVNVGLWN 439
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEW 458
D L G ++AVK+ RV+DF GK + ++ L PD PEA+ +K W
Sbjct: 440 EQAVDFNL------PEG--SVIAVKSVRVTDFGGKSLSMGFSSTLHPNPDIPEAYAIKGW 491
Query: 459 FEKEGKNTQSVSISR---DSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKC 515
+ +G +T S+ D S+ R T+ + KD+ LG +K D+ V + ++K
Sbjct: 492 YSSKGTSTTFHSLKMEGGDRNSMRYVADRITIGKAKDDNLGRSDKGDYFNVRGAVNFLKV 551
Query: 516 DNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWV 575
DNF Y AC C KKV+ DG W C++C +RY+L I D T W+
Sbjct: 552 DNFAYPAC----STEGCQKKVIEQTDGTWRCEKCQVDHPAPKWRYMLTASILDETSQIWI 607
Query: 576 TAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRV 635
T F + AE+++ M A L LK D EKF +V ++ +Y F+++ +E+T+++E R+
Sbjct: 608 TLFNDQAEKLLSMDANTLTELKNTDP--EKFQKVTQSVQMNEYDFRVRAREDTYNEETRI 665
Query: 636 KSTVVKAERYNYSSETRFI 654
+ TV + E ++
Sbjct: 666 RYTVTNLYPLRWKVEADYL 684
>gi|195037625|ref|XP_001990261.1| GH19242 [Drosophila grimshawi]
gi|193894457|gb|EDV93323.1| GH19242 [Drosophila grimshawi]
Length = 602
Score = 273 bits (697), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 157/446 (35%), Positives = 243/446 (54%), Gaps = 22/446 (4%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PIA+L+PY KW IKARVT+K +R ++N RG+GK+F DL+D + GEIR T F D+
Sbjct: 167 PIASLSPYQNKWVIKARVTSKTAIRTWSNARGEGKLFSMDLMD-ESGEIRATAFKEQCDK 225
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE-DDASIPRQQFHF 339
FY +E +Y S+ LKPA K ++ L ND E+ +MVQLC + DD IP +F
Sbjct: 226 FYDLIEVDNVYFFSKCQLKPANKQYSQLKNDYEMTFTGETMVQLCDDADDGGIPEIKFDL 285
Query: 340 RPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWG 398
PI+ V MEN + VD IG+ + + R E +KR L L DMS ++ LTLWG
Sbjct: 286 VPISQVASMENKAAVDTIGICKDVGEVQTFTSRTTNKEFKKRELTLVDMSNAAINLTLWG 345
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFN-GKVVGTISTTQLFIEPDFPEAHRLKE 457
D+ + D V P++ VK R+++FN GK + + L I PD PEAH+L+
Sbjct: 346 ----DEAVNF----DGHVQPVILVKGSRINEFNGGKSLSMGGGSILKINPDIPEAHKLRG 397
Query: 458 WFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDN 517
WF+ G + S +S + + T+ + LG+ +KPD+ A + +K +N
Sbjct: 398 WFDNGGGDNISNLVSARTGGGSFSTDWVTLKDARIRNLGSGDKPDYFQCKAVVHIVKQEN 457
Query: 518 FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTA 577
Y +CP CNKKV++ G+G++ C+RC+ + YR ++ I D T WVT
Sbjct: 458 AFYKSCP----QTECNKKVVDEGNGQYRCERCNAAYPNFKYRLLINMSIGDWTSNRWVTC 513
Query: 578 FQECAEEIMGMSAKDL-YSLKYVDQNDEK-FGEVVRNATFTKYLFKLKVKEETFSDEQRV 635
F E E+++ +A+++ +L+ + EK FG++ F+ ++FKL+ K E + D R
Sbjct: 514 FNEAGEQLLKHTAQEVGEALENDPTSAEKMFGDI----NFSSFIFKLRCKNEMYGDMTRN 569
Query: 636 KSTVVKAERYNYSSETRFILDLMDKL 661
K TV NY + ++ + ++
Sbjct: 570 KLTVQSMTPINYKEYNKHLIKELKEM 595
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 11/89 (12%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSR-SQQGMLATQRNELVTSGLLQIGSV 60
PVLQ++ +K + Q+R+R+++SDG + MLA+Q NE+ GLL ++
Sbjct: 16 PVLQILGIKRI------NTNSDQERYRLLMSDGKYYNSYAMLASQLNEMQHKGLLTENTI 69
Query: 61 VRLTKFTCNVI----QNRMIVIVMDLDVI 85
VRL K+ +++ + ++IV +L V+
Sbjct: 70 VRLDKYMTSMVGKEGSGKRVLIVTELTVL 98
>gi|322783307|gb|EFZ10882.1| hypothetical protein SINV_05412 [Solenopsis invicta]
Length = 587
Score = 272 bits (695), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 161/450 (35%), Positives = 243/450 (54%), Gaps = 24/450 (5%)
Query: 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAV 277
R IAAL+PY +W IKARV K ++ ++N RG+GK F DL+D GEIR T F +
Sbjct: 146 RTTQIAALSPYQNRWVIKARVINKSPIKTWSNSRGEGKFFSMDLIDK-SGEIRCTAFKEM 204
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
D+FY + AG +Y +SR +LK A K +N + ND E+ + + + C+++ IP Q+
Sbjct: 205 VDKFYDLIVAGNVYYISRCTLKMANKQYNTMKNDYEMSVTSDTGIVPCHDNSNDIPTLQY 264
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTL 396
+F PI+ VE E N ++D++GVV+ I R G E KR + + D SG V +TL
Sbjct: 265 NFSPISQVESKEKNDLLDVLGVVTTIGDVQHFTARATGRELIKRDISIVDDSGTMVTVTL 324
Query: 397 WGNFCNDDGLRLQ-HMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLF-IEPDFPEAHR 454
W R Q D+ I+A+K V +FNG+ +++ + + +PD PEAHR
Sbjct: 325 W---------RTQAEEFDASNNTIIAIKRASVGEFNGRKNLSLTMSSIIEKDPDIPEAHR 375
Query: 455 LKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEK-PDWITVSATIVYI 513
L+ W+ G + + S+SR S T + D LG K PD TV ATI I
Sbjct: 376 LRGWYTAVGHSETAKSLSRVGGSTDFNGPLYTFQEATDARLGEKMNLPDSFTVVATIKQI 435
Query: 514 KCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLT 573
K +N Y ACP+ C KK+++ +G + C++C++ YR + ++ D TG
Sbjct: 436 KTENSLYRACPV----ENCKKKLIDQDNGIFRCEKCNKEYPNFTYRLLANMELADATGSR 491
Query: 574 WVTAFQECAEEIMGMSAKDLYSLKYVDQND--EKFGEVVRNATFTKYLFKLKVKEETFSD 631
W+TAF E AE+I+GMSA++L LK D++ +K GE ATF ++F L+ + E F D
Sbjct: 492 WITAFNEEAEKILGMSAQELGELKENDKDAYLQKIGE----ATFKTFMFNLEARSEVFQD 547
Query: 632 EQRVKSTVVKAERYNYSSETRFILDLMDKL 661
R+K NY + ++D + KL
Sbjct: 548 AMRIKHVCTSVRPINYKTYLPHLIDKVSKL 577
>gi|115398417|ref|XP_001214800.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114192991|gb|EAU34691.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 588
Score = 272 bits (695), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 152/431 (35%), Positives = 249/431 (57%), Gaps = 23/431 (5%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
+ PI A++PY KWTIKAR T+K ++ + N + GK+F +LLD D GEIR T FN
Sbjct: 170 MYPIEAISPYCHKWTIKARCTSKTNIKTWQNTKSTGKLFSVNLLD-DSGEIRATGFNEQC 228
Query: 279 DQFYHQVEAGKIYLVSRGS-LKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
D Y + G +Y +S ++ A+K F +L+ND E+ + ++V+ ED + +P+ +F
Sbjct: 229 DALYDLFQEGGVYYISTPCRVQIAKKQFTNLNNDYELTFERDTVVEKA-EDQSDVPQVRF 287
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTET-QKRTLHLRDMSGRSVELTL 396
+F I D++ +E ++ +D+IGV+ + ++ K ++ KR L L D +G SV LT+
Sbjct: 288 NFTTIGDLQSVEKDTTIDVIGVLKEAGECSQIVSKTTSKPYNKRELTLVDNTGFSVRLTI 347
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
WG D + + ++A K +VSDF G+ + +S+ + ++PD EAHRLK
Sbjct: 348 WGATAMDFNVSPE--------AVVAFKGVKVSDFGGRSLSLLSSGSMTVDPDIEEAHRLK 399
Query: 457 EWFEKEGKN---TQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYI 513
W++ +G++ T S+S + S +AD KT+ Q+K+E LG E + ++ AT++YI
Sbjct: 400 GWYDAQGRDENFTSHASLSSATTSTMKADSFKTIGQVKEEQLGMSEDAAYFSLKATVIYI 459
Query: 514 KCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLT 573
K +N Y AC CNKKV G+WHC+RC+++ +YRYI+ + DHTG
Sbjct: 460 KQENVYYPACL----SEGCNKKVTELDPGQWHCERCEKTYPHPEYRYIMLINVSDHTGQL 515
Query: 574 WVTAFQECAEEIMGMSAKDLYSLKYVDQNDEK-FGEVVRNATFTKYLFKLKVKEETFSDE 632
W++ F E +MG SA +L +L+ +NDEK GE+ +NA + F+ + K + F +
Sbjct: 516 WLSCFDEVGRLMMGTSANELSALR---ENDEKAAGEIFQNANCRTWNFRCRAKTDHFDGQ 572
Query: 633 QRVKSTVVKAE 643
QR++ V A+
Sbjct: 573 QRIRYQVSSAK 583
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 71/117 (60%), Gaps = 10/117 (8%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++Q + +K + QQ+ Q+R+R V SD S Q MLATQ N VTSGLL+ G V
Sbjct: 28 PIVQCVQIKPLPP-----QQNNQERYRAVFSDISNYVQTMLATQANPFVTSGLLRRGCFV 82
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVI--IDKCDPIGKPVPAQRPSSNE---QPGSVTGN 113
+L F N ++ + I+I++DL+V+ + + + IG+P P + + +E QP +++ N
Sbjct: 83 KLKSFQANSVKGKKILIILDLEVLQELGEAEKIGEPKPLESKAEDEEKPQPTTISSN 139
>gi|195390608|ref|XP_002053960.1| GJ23056 [Drosophila virilis]
gi|194152046|gb|EDW67480.1| GJ23056 [Drosophila virilis]
Length = 609
Score = 272 bits (695), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 156/445 (35%), Positives = 237/445 (53%), Gaps = 20/445 (4%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PI++L+PY KW IKARVT+K +R ++N RG+GK+F DL+D + GEIR T F D+
Sbjct: 174 PISSLSPYQNKWVIKARVTSKTAIRTWSNARGEGKLFSMDLMD-ESGEIRATAFKEQCDK 232
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLC-YEDDASIPRQQFHF 339
FY +E +Y S+ LKPA K ++ L ND E+ +MVQ C ED+ IP +F
Sbjct: 233 FYDLIEVDNVYFFSKCQLKPANKQYSQLKNDYEMTFTNETMVQPCDDEDNGGIPEIKFDL 292
Query: 340 RPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWG 398
PI+ V MEN VD IG+ + + R E +KR L L DMS +V LTLWG
Sbjct: 293 VPISQVANMENKEAVDTIGICKEVGELQAFTSRTTNKEFKKRELTLVDMSNAAVTLTLWG 352
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFN-GKVVGTISTTQLFIEPDFPEAHRLKE 457
D+ + D V P++ VK R+++FN GK + + L I PD PEAH+L+
Sbjct: 353 ----DEAVNF----DGHVQPVILVKGSRINEFNGGKSLSMGGGSILKINPDIPEAHKLRG 404
Query: 458 WFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDN 517
WF+ G + S +S + + T+ + LG+ +KPD+ A + +K +N
Sbjct: 405 WFDNGGGDNISNMVSARTGGGSFSTDWVTLKDARLRNLGSGDKPDYFQCKAVVHIVKQEN 464
Query: 518 FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTA 577
Y ACP CNKKV++ G+G++ C+RC+ + YR ++ I D T WVT
Sbjct: 465 AFYKACP----QADCNKKVVDEGNGQYRCERCNAAFPNFKYRLLINMSIGDWTSNRWVTC 520
Query: 578 FQECAEEIMGMSAKDLYSLKYVDQNDEKFGE-VVRNATFTKYLFKLKVKEETFSDEQRVK 636
F E E+++ +A+++ +ND E + + F+ Y+FKL+ K E + D R K
Sbjct: 521 FSETGEQLLKHNAQEVGE---ALENDPAAAEKMFADINFSSYIFKLRCKNEMYGDMTRNK 577
Query: 637 STVVKAERYNYSSETRFILDLMDKL 661
TV NY + ++ + ++
Sbjct: 578 LTVQSMTPINYKEYNKHLIKELKEM 602
>gi|50406267|ref|XP_456619.1| DEHA2A06776p [Debaryomyces hansenii CBS767]
gi|49652283|emb|CAG84575.1| DEHA2A06776p [Debaryomyces hansenii CBS767]
Length = 620
Score = 272 bits (695), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 140/450 (31%), Positives = 253/450 (56%), Gaps = 20/450 (4%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQF 281
I L+PY +W IKARV+ KG++R ++N RG+GK+F+ + LD + EIR T FN +A++F
Sbjct: 179 IEQLSPYQNQWVIKARVSYKGDIRKWSNARGEGKLFNVNFLD-ESDEIRATAFNDLAEKF 237
Query: 282 YHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRP 341
Y ++E GK+Y +S+ ++ A+ F+HL + E+ LD + V+ C+ D +P+ F+F
Sbjct: 238 YQELEEGKVYYISKARIQQAKPQFSHLSHPYELALDRDTNVEECF-DTTDVPKIHFNFTK 296
Query: 342 INDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWGNF 400
+N +E E NS++D+IGV+ ++P + K+ G +R + + D S ++ + LW N
Sbjct: 297 LNQIESCEPNSIIDVIGVLKEVNPVFQITAKSTGKPFDRRNITIVDDSNFAITVGLWNNT 356
Query: 401 CNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFE 460
D D+ ++A K ++ DF G+ + + PD EA++LK WF+
Sbjct: 357 AVD--------FDTSEGSVIAFKGCKIQDFAGRSLTLTHAGSMMANPDTAEAYQLKGWFD 408
Query: 461 KEGKNTQSVSI-SRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFC 519
+G N ++ + +S + + RK++ Q ++E LG EKPD+ + AT+ + K +NFC
Sbjct: 409 NQGVNENFKTLKNENSSNQNLINNRKSILQAQEENLGMSEKPDFFNIKATVNFFKTENFC 468
Query: 520 YTAC------PIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLT 573
Y AC CN+KV+ DG W C++CD + E YRYIL + D +G
Sbjct: 469 YPACNNSLQSSSQQPSTTCNRKVVEQPDGTWRCEKCDINFNEPHYRYILNCSVMDSSGQL 528
Query: 574 WVTAFQECAEEIMGMSAKDLYSLKYVDQNDEK--FGEVVRNATFTKYLFKLKVKEETFSD 631
W+T F + A ++ G +A +L +L+ N+E F +++ + T ++ F+LK ++++++
Sbjct: 529 WMTLFDQEANKLFGKTAGELLTLREQQTNNENNVFQDLINDITMKEFNFRLKARQDSYNG 588
Query: 632 EQRVKSTVVKAERYNYSSETRFILDLMDKL 661
RV+ + ++++E + +D +
Sbjct: 589 VVRVRYQAMTINDVDFNAECEHLCSELDSM 618
>gi|296828318|ref|XP_002851311.1| replication factor-A protein 1 [Arthroderma otae CBS 113480]
gi|238838865|gb|EEQ28527.1| replication factor-A protein 1 [Arthroderma otae CBS 113480]
Length = 599
Score = 271 bits (693), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 155/442 (35%), Positives = 247/442 (55%), Gaps = 26/442 (5%)
Query: 217 SRIIPIAALNPYMG-KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFN 275
+ I I AL+P+ KWTIKAR T K +++ + N G+GK+F +LLD D GEIR T F
Sbjct: 163 ANIFSIEALSPFANNKWTIKARCTHKSDIKTWKNTYGEGKLFSVNLLD-DSGEIRATAFK 221
Query: 276 AVADQFYHQVEAGKIYLVSRG-SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPR 334
D Y E G +Y +S ++K A+K +++++ND E+ D ++V+ ED +P+
Sbjct: 222 DQCDLLYPVFEEGSVYYISSPCTVKMAKKEYSNVNNDYELTFDRDTVVEKA-EDQNDVPQ 280
Query: 335 QQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVE 393
+F+F + +++ +E + +D++G++ + T+ + K G KR L L D SG SV
Sbjct: 281 VRFNFTGLGNLQSIEKGTTIDVLGILKEVDTTSQVTSKTTGKPYDKRELTLVDNSGFSVR 340
Query: 394 LTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAH 453
LT+WGN D+ ++A K +VSDF G+ + +S+ + ++PD EAH
Sbjct: 341 LTVWGNTAT--------TFDTPPESVVAFKGVKVSDFGGRTLSLLSSGSITVDPDIEEAH 392
Query: 454 RLKEWFEKEGKN---TQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATI 510
RLK W++ +GK+ T S G KT+S+I+DE + T E P+ + AT+
Sbjct: 393 RLKGWYDAQGKSNFFTAYSSEGGSGGGGGSWPTFKTISEIRDEQVPTAENPENFALKATV 452
Query: 511 VYIKCDNFCYTACPIMIGDRPCNKKVMNNGD-GRWHCDRCDQSVVECDYRYILQFQIQDH 569
+++K DN CY ACP + C K M GD +WHC+RC++S YRYIL DH
Sbjct: 453 IHVK-DNLCYPACP----NEACKNKKMTGGDLEQWHCERCERSYANPKYRYILSLNASDH 507
Query: 570 TGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDE-KFGEVVRNATFTKYLFKLKVKEET 628
TG W++ F E + I GM+A L +K ++DE E+ + AT+ + FK + K +T
Sbjct: 508 TGQIWLSCFDEAGQAIFGMTADKLMRIK---EDDEVAANEITKGATYCTWNFKCRAKLDT 564
Query: 629 FSDEQRVKSTVVKAERYNYSSE 650
+ ++QR + V A +YS+E
Sbjct: 565 YQEQQRTRYNVYAATPIDYSTE 586
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 9/112 (8%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P+LQ + +K V ++Q+ RF +V SD + ML TQ N VT GLL+ GS V
Sbjct: 24 PILQCLRIKPVTVREQE-------RFGVVFSDVVNFVRTMLPTQLNNYVTEGLLRRGSFV 76
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVI--IDKCDPIGKPVPAQRPSSNEQPGSVT 111
RLT F +V++ + ++I+M L+V+ + + + IG P P + S ++ G T
Sbjct: 77 RLTNFQVSVVKGKHLLIIMGLEVLSALGEAERIGDPKPLEPKSGDDMGGQST 128
>gi|190345993|gb|EDK37976.2| hypothetical protein PGUG_02074 [Meyerozyma guilliermondii ATCC
6260]
Length = 469
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 147/464 (31%), Positives = 259/464 (55%), Gaps = 24/464 (5%)
Query: 211 GKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIR 270
G+S PI +L+PY W IKARV+ KG++R ++N RG+GK+F+ + LD + EIR
Sbjct: 16 GQSTAGQTFNPIESLSPYQNNWRIKARVSFKGDIRKWSNARGEGKLFNVNFLD-ESDEIR 74
Query: 271 VTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDA 330
T FN VA+QFY+ +E GK+Y V R ++ A+ F+HL + E+ LD +++ C+ D +
Sbjct: 75 ATAFNDVAEQFYNTLEEGKVYTVERARIQQAKPQFSHLTHPYELALDKDTVITECF-DTS 133
Query: 331 SIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSG 389
+P+ F+F ++ ++ E N+VVD+IGV+ +P + K+ G +R + + D S
Sbjct: 134 DVPKLHFNFTKLDKIQAAEVNAVVDVIGVLKTANPVFQITAKSTGKAFDRRNITIVDDSN 193
Query: 390 RSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDF 449
++++ LW N L ++ ++A K +V DF G+ + + + + PD
Sbjct: 194 FAIDIGLW----NQTALEF----NTSEGSVIAFKGCKVQDFGGRSLTLTHSGSMVVNPDT 245
Query: 450 PEAHRLKEWFEKEGKNTQSVSISRDS-LSVGRADIRKTVSQIKDEGLGTKEKPDWITVSA 508
PEA++LK W++ +G N S+ ++ + RKT+ +++ LG EKPD+ +V A
Sbjct: 246 PEAYQLKGWYDNQGMNENFKSLKVEAGPNQNYIKNRKTILAAQEDNLGMHEKPDFFSVKA 305
Query: 509 TIVYIKCDNFCYTACPIMI---------GDRPCNKKVMNNGDGRWHCDRCDQSVVECDYR 559
TI Y K DNF Y AC + + CN+KV+ DG W C++C+ ++ E +R
Sbjct: 306 TISYFKTDNFSYPACSNTVPGNSQAPGQQENTCNRKVLEQSDG-WRCEKCNITLPEPLHR 364
Query: 560 YILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDE--KFGEVVRNATFTK 617
YIL I D TG W T F + A ++ GMSA DL +LK +E +F +++ + T +
Sbjct: 365 YILNCSITDETGQLWTTLFDQEARKLFGMSAGDLINLKEKQDMNESNEFADLMESITMKE 424
Query: 618 YLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
+ F+L+ ++++++ R++ + ++ +E + +D +
Sbjct: 425 FNFRLRARQDSYNGNVRIRYQTMSLFDVDFVAECDELCQELDSM 468
>gi|170032512|ref|XP_001844125.1| replication protein A 70 kDa DNA-binding subunit [Culex
quinquefasciatus]
gi|167872595|gb|EDS35978.1| replication protein A 70 kDa DNA-binding subunit [Culex
quinquefasciatus]
Length = 615
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 147/450 (32%), Positives = 253/450 (56%), Gaps = 29/450 (6%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PI +L+PY KW IKARV +K +R ++N +G+GK+F D++D + GEIRVT F D+
Sbjct: 180 PINSLSPYQNKWVIKARVMSKSAIRTWSNAKGEGKLFSMDIMD-ESGEIRVTAFKEQCDK 238
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
FY +EA K+Y +++ LKPA K ++ L ND E+ + +++Q C + DAS+P Q++F
Sbjct: 239 FYDMIEADKVYYITKCQLKPANKQYSTLKNDYEMTMSNETIIQECKDVDASMPGIQYNFV 298
Query: 341 PINDVEGMENNSVVDLIGVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVELTLWG- 398
PI+ + ME N+++D++GV S + K +G E KR + + D S +V+LTLWG
Sbjct: 299 PISQITNMEPNAMIDVVGVCKEASELNTFTAKSSGRELTKREVTMVDSSNAAVQLTLWGA 358
Query: 399 ---NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDF-NGKVVGTISTTQLFIEPDFPEAHR 454
NF + P++ VK RV++F GK +G + + + + PD AH+
Sbjct: 359 DAQNF------------PTSTNPVVVVKGARVTEFGGGKSLGLVGGSVMKLNPDIDVAHK 406
Query: 455 LKEWFEKEGKNTQSVSISRDSLSVGRADIRK--TVSQIKDEGLGTKEKPDWITVSATIVY 512
++ W++ G + S+S + + G + + T + K++ LG +KPD+ V A +
Sbjct: 407 IRGWYDNGGCDAVINSVSTRTGAAGGSYSTEWMTFHETKEKNLGHGDKPDYFQVKALVHN 466
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
IK N Y ACP CNKKV++ +G++ C++C+ YR ++ + D T
Sbjct: 467 IKSGNAVYKACP----QTDCNKKVVDQDNGQYRCEKCNADFPNFKYRLLVNMLVGDWTSN 522
Query: 573 TWVTAFQECAEEIMGMSAKDL-YSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSD 631
WVT F E E+++G +++++ +L+Y N ++ ++ N +F ++FKL+ K E + D
Sbjct: 523 RWVTVFTELGEQMLGKTSQEIGDALEY---NKDEAEQIFSNISFASFIFKLRTKVEFYGD 579
Query: 632 EQRVKSTVVKAERYNYSSETRFILDLMDKL 661
R K+T V A N+ +++ + +L
Sbjct: 580 AARNKTTAVAATPVNHKEYNAYLVKNIQEL 609
>gi|195499032|ref|XP_002096775.1| GE24866 [Drosophila yakuba]
gi|194182876|gb|EDW96487.1| GE24866 [Drosophila yakuba]
Length = 603
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/444 (33%), Positives = 244/444 (54%), Gaps = 18/444 (4%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PI++L+PY KW IKARVT+K +R ++N RG+GK+F DL+D + GEIR T F D+
Sbjct: 168 PISSLSPYQNKWVIKARVTSKSGIRTWSNARGEGKLFSMDLMD-ESGEIRATAFKEQCDK 226
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE-DDASIPRQQFHF 339
FY ++ +Y +S+ LKPA K ++ L+N E+ ++VQLC + DD IP +++
Sbjct: 227 FYDLIQVDSVYYISKCQLKPANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNL 286
Query: 340 RPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWG 398
PI+DV GMEN + VD IG+ + S + R E +KR + L DMS ++ LTLWG
Sbjct: 287 IPISDVSGMENKAAVDTIGICKEVGELQSFVARTTNKEFKKREITLVDMSNSAISLTLWG 346
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLF-IEPDFPEAHRLKE 457
D+ + D V P++ VK R+++FNG ++ + I PD PEAH+L+
Sbjct: 347 ----DEAVNF----DGHVQPVILVKGSRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRG 398
Query: 458 WFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDN 517
WF+ G + + +S + + T+ + LG+ +KPD+ A + +K +N
Sbjct: 399 WFDNGGGDNVANMVSARTGGGNFSTEWMTLKDARTRNLGSGDKPDYFQCKAVVHIVKQEN 458
Query: 518 FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTA 577
Y ACP CNKKV++ G+ ++ C++C+ YR ++ I D T WV++
Sbjct: 459 AFYRACP----QSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVSS 514
Query: 578 FQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKS 637
F E E+++G S++++ + ++ + K ++ FT ++FKL+ K E F D R K
Sbjct: 515 FNEVGEQLLGHSSQEVG--EALENDPAKAEQIFSALNFTSHIFKLRCKNEVFGDMTRNKL 572
Query: 638 TVVKAERYNYSSETRFILDLMDKL 661
TV N+ + +L + +L
Sbjct: 573 TVQSVAPINHKEYNKHLLKELQEL 596
>gi|326474770|gb|EGD98779.1| replication protein A DNA-binding subunit [Trichophyton tonsurans
CBS 112818]
Length = 598
Score = 270 bits (690), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 149/440 (33%), Positives = 250/440 (56%), Gaps = 23/440 (5%)
Query: 217 SRIIPIAALNPYMG-KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFN 275
+ I I AL+P+ KWTIKAR T K ++ + N G+GK+F +LLD D GEIR T F
Sbjct: 163 ANIFSIEALSPFANNKWTIKARCTHKSNIKTWKNTFGEGKLFSVNLLD-DSGEIRATAFK 221
Query: 276 AVADQFYHQVEAGKIYLVSRG-SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPR 334
D Y E G +Y +S ++K A+K F++++ND E+ D ++V+ ED +P+
Sbjct: 222 DQCDLLYPIFEEGAVYYISSPCTVKMAKKEFSNVNNDYELTFDRDTVVEKA-EDQNDVPQ 280
Query: 335 QQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVE 393
+F+F + +++ ++ + +D++G++ + T+ + K G KR L L D SG SV
Sbjct: 281 IRFNFTSLGNLQSIDKGTTIDVLGILKDVDATSQVTSKTTGKPYDKRELTLVDNSGFSVR 340
Query: 394 LTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAH 453
LT+WGN + D+ ++A K +VSDF G+ + +S+ + ++PD EAH
Sbjct: 341 LTVWGNTATN--------FDTPPESVVAFKGVKVSDFGGRTLSLLSSGTVTVDPDIEEAH 392
Query: 454 RLKEWFEKEGKNTQSVSISRDSLSVGRAD--IRKTVSQIKDEGLGTKEKPDWITVSATIV 511
RLK W++ +GK+ + S D+ G KT+S+I+DE + + + + ++ AT++
Sbjct: 393 RLKGWYDAQGKSNSFTAYSSDTTGGGGGSWPTFKTISEIRDEEIPSADSFESFSLKATVI 452
Query: 512 YIKCDNFCYTACPIMIGDRPCNKKVMNNGD-GRWHCDRCDQSVVECDYRYILQFQIQDHT 570
++K DN CY ACP + C K + GD +WHC+RC++S YRYIL DHT
Sbjct: 453 HVK-DNLCYPACP----NEACKNKKVTRGDLDQWHCERCERSYANPKYRYILSLNACDHT 507
Query: 571 GLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFS 630
G W++ F E + I GM+A +L +K + +D E+ + AT+ + FK + K +T+
Sbjct: 508 GQIWLSCFDEAGQMIFGMTADELMKIK--EDDDAAANEITKGATYCTWNFKCRAKLDTYQ 565
Query: 631 DEQRVKSTVVKAERYNYSSE 650
++QR + V+ A +Y++E
Sbjct: 566 EQQRTRYNVIAATPIDYATE 585
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 72/128 (56%), Gaps = 10/128 (7%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P+LQ + +K VV ++Q R+ +V SD + + ML TQ N VT G+L+ GS V
Sbjct: 24 PILQCLRIKPVVVREQD-------RYGVVFSDVNHFVRTMLPTQLNSYVTDGILRRGSFV 76
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVI--IDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
RLT F +V++ + ++I+M L+V+ + + + IG P P + P S ++ G + SN
Sbjct: 77 RLTNFQVSVVKGKHLLIIMGLEVLSALGEAERIGDPKPLE-PKSGDEMGGQSTTLSSNEF 135
Query: 120 GVSLQHHN 127
+ Q HN
Sbjct: 136 YNAPQTHN 143
>gi|17737841|ref|NP_524274.1| replication protein A 70 [Drosophila melanogaster]
gi|2498844|sp|Q24492.1|RFA1_DROME RecName: Full=Replication protein A 70 kDa DNA-binding subunit;
Short=RP-A p70; AltName: Full=Replication factor A
protein 1; Short=RF-A protein 1; AltName:
Full=Single-stranded DNA-binding protein; Short=DmRPA1
gi|1359608|emb|CAA94241.1| replication protein A [Drosophila melanogaster]
gi|7299004|gb|AAF54206.1| replication protein A 70 [Drosophila melanogaster]
gi|17861998|gb|AAL39476.1| LD04815p [Drosophila melanogaster]
gi|220943002|gb|ACL84044.1| RpA-70-PA [synthetic construct]
gi|220953088|gb|ACL89087.1| RpA-70-PA [synthetic construct]
Length = 603
Score = 270 bits (689), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 154/467 (32%), Positives = 255/467 (54%), Gaps = 19/467 (4%)
Query: 199 QSPSMYANRGLVGKSEVPSRII-PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVF 257
+ PS N +V S + S + PI++L+PY KW IKARVT+K +R ++N RG+GK+F
Sbjct: 145 KEPSHNNNNNIVMNSSINSGMTHPISSLSPYQNKWVIKARVTSKSGIRTWSNARGEGKLF 204
Query: 258 HFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLD 317
DL+D + GEIR T F D+FY ++ +Y +S+ LKPA K ++ L+N E+
Sbjct: 205 SMDLMD-ESGEIRATAFKEQCDKFYDLIQVDSVYYISKCQLKPANKQYSSLNNAYEMTFS 263
Query: 318 MTSMVQLCYE-DDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGT 375
++VQLC + DD IP +++ PI+DV GMEN + VD IG+ + S + R
Sbjct: 264 GETVVQLCEDTDDDPIPEIKYNLVPISDVSGMENKAAVDTIGICKEVGELQSFVARTTNK 323
Query: 376 ETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVV 435
E +KR + L DMS ++ LTLWG DD + D V P++ VK R+++FNG
Sbjct: 324 EFKKRDITLVDMSNSAISLTLWG----DDAVNF----DGHVQPVILVKGTRINEFNGGKS 375
Query: 436 GTISTTQLF-IEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEG 494
++ + I PD PEAH+L+ WF+ G ++ + +S + + T+ +
Sbjct: 376 LSLGGGSIMKINPDIPEAHKLRGWFDNGGGDSVANMVSARTGGGSFSTEWMTLKDARARN 435
Query: 495 LGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVV 554
LG+ +KPD+ A + +K +N Y ACP CNKKV++ G+ ++ C++C+
Sbjct: 436 LGSGDKPDYFQCKAVVHIVKQENAFYRACP----QSDCNKKVVDEGNDQFRCEKCNALFP 491
Query: 555 ECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNAT 614
YR ++ I D T WV++F E E+++G +++++ + ++ + K ++
Sbjct: 492 NFKYRLLINMSIGDWTSNRWVSSFNEVGEQLLGHTSQEVG--EALENDPAKAEQIFSALN 549
Query: 615 FTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
FT ++FKL+ K E + D R K TV N+ + +L + +L
Sbjct: 550 FTSHIFKLRCKNEVYGDMTRNKLTVQSVAPINHKEYNKHLLKELQEL 596
>gi|195572613|ref|XP_002104290.1| GD20882 [Drosophila simulans]
gi|194200217|gb|EDX13793.1| GD20882 [Drosophila simulans]
Length = 603
Score = 269 bits (688), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 148/444 (33%), Positives = 245/444 (55%), Gaps = 18/444 (4%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PI++L+PY KW IKARVT+K +R ++N RG+GK+F DL+D + GEIR T F D+
Sbjct: 168 PISSLSPYQNKWVIKARVTSKSGIRTWSNARGEGKLFSMDLMD-ESGEIRATAFKEQCDK 226
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE-DDASIPRQQFHF 339
FY ++ +Y +S+ LKPA K ++ L+N E+ ++VQLC + DD IP +++
Sbjct: 227 FYDLIQVDSVYYISKCQLKPANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNL 286
Query: 340 RPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWG 398
PI+DV GMEN + VD IG+ + S + R E +KR + L DMS ++ LTLWG
Sbjct: 287 VPISDVSGMENKAAVDTIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAISLTLWG 346
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLF-IEPDFPEAHRLKE 457
DD + D V P++ VK R+++FNG ++ + I PD PEAH+L+
Sbjct: 347 ----DDAVNF----DGHVQPVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRG 398
Query: 458 WFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDN 517
WF+ G ++ + +S + + T+ + LG+ +KPD+ A + +K +N
Sbjct: 399 WFDNGGGDSVANMVSARTGGGSFSTEWMTLKDARARNLGSGDKPDYFQCKAVVHIVKQEN 458
Query: 518 FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTA 577
Y ACP CNKKV++ G+ ++ C++C+ YR ++ I D T WV++
Sbjct: 459 AFYRACP----QSDCNKKVIDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVSS 514
Query: 578 FQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKS 637
F E E+++G +++++ + ++ + K ++ FT ++FKL+ K E + D R K
Sbjct: 515 FNEVGEQLLGHTSQEVG--EALENDPAKAEQIFSALNFTSHIFKLRCKNEVYGDMTRNKL 572
Query: 638 TVVKAERYNYSSETRFILDLMDKL 661
TV N+ + +L + +L
Sbjct: 573 TVQSVAPINHKEYNKHLLKELQEL 596
>gi|146420901|ref|XP_001486403.1| hypothetical protein PGUG_02074 [Meyerozyma guilliermondii ATCC
6260]
Length = 469
Score = 269 bits (688), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 147/464 (31%), Positives = 258/464 (55%), Gaps = 24/464 (5%)
Query: 211 GKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIR 270
G+S PI L+PY W IKARV+ KG++R ++N RG+GK+F+ + LD + EIR
Sbjct: 16 GQSTAGQTFNPIELLSPYQNNWRIKARVSFKGDIRKWSNARGEGKLFNVNFLD-ESDEIR 74
Query: 271 VTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDA 330
T FN VA+QFY+ +E GK+Y V R ++ A+ F+HL + E+ LD +++ C+ D +
Sbjct: 75 ATAFNDVAEQFYNTLEEGKVYTVERARIQQAKPQFSHLTHPYELALDKDTVITECF-DTS 133
Query: 331 SIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSG 389
+P+ F+F ++ ++ E N+VVD+IGV+ +P + K+ G +R + + D S
Sbjct: 134 DVPKLHFNFTKLDKIQAAEVNAVVDVIGVLKTANPVFQITAKSTGKAFDRRNITIVDDSN 193
Query: 390 RSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDF 449
++++ LW N L ++ ++A K +V DF G+ + + + + PD
Sbjct: 194 FAIDIGLW----NQTALEF----NTSEGSVIAFKGCKVQDFGGRSLTLTHSGSMVVNPDT 245
Query: 450 PEAHRLKEWFEKEGKNTQSVSISRDS-LSVGRADIRKTVSQIKDEGLGTKEKPDWITVSA 508
PEA++LK W++ +G N S+ ++ + RKT+ +++ LG EKPD+ +V A
Sbjct: 246 PEAYQLKGWYDNQGMNENFKSLKVEAGPNQNYIKNRKTILAAQEDNLGMHEKPDFFSVKA 305
Query: 509 TIVYIKCDNFCYTACPIMI---------GDRPCNKKVMNNGDGRWHCDRCDQSVVECDYR 559
TI Y K DNF Y AC + + CN+KV+ DG W C++C+ ++ E +R
Sbjct: 306 TISYFKTDNFSYPACSNTVPGNSQAPGQQENTCNRKVLEQSDG-WRCEKCNITLPEPLHR 364
Query: 560 YILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDE--KFGEVVRNATFTK 617
YIL I D TG W T F + A ++ GMSA DL +LK +E +F +++ + T +
Sbjct: 365 YILNCSITDETGQLWTTLFDQEARKLFGMSAGDLINLKEKQDMNESNEFADLMESITMKE 424
Query: 618 YLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
+ F+L+ ++++++ R++ + ++ +E + +D +
Sbjct: 425 FNFRLRARQDSYNGNVRIRYQTMSLFDVDFVAECDELCQELDSM 468
>gi|195330772|ref|XP_002032077.1| GM26360 [Drosophila sechellia]
gi|194121020|gb|EDW43063.1| GM26360 [Drosophila sechellia]
Length = 603
Score = 269 bits (688), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 148/444 (33%), Positives = 245/444 (55%), Gaps = 18/444 (4%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PI++L+PY KW IKARVT+K +R ++N RG+GK+F DL+D + GEIR T F D+
Sbjct: 168 PISSLSPYQNKWVIKARVTSKSGIRTWSNARGEGKLFSMDLMD-ESGEIRATAFKEQCDK 226
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE-DDASIPRQQFHF 339
FY ++ +Y +S+ LKPA K ++ L+N E+ ++VQLC + DD IP +++
Sbjct: 227 FYDLIQVDSVYYISKCQLKPANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNL 286
Query: 340 RPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWG 398
PI+DV GMEN + VD IG+ + S + R E +KR + L DMS ++ LTLWG
Sbjct: 287 VPISDVSGMENKAAVDTIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAISLTLWG 346
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLF-IEPDFPEAHRLKE 457
DD + D V P++ VK R+++FNG ++ + I PD PEAH+L+
Sbjct: 347 ----DDAVNF----DGHVQPVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRG 398
Query: 458 WFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDN 517
WF+ G ++ + +S + + T+ + LG+ +KPD+ A + +K +N
Sbjct: 399 WFDNGGGDSVANMVSARTGGGSFSTEWMTLKDARARNLGSGDKPDYFQCKAVVHIVKQEN 458
Query: 518 FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTA 577
Y ACP CNKKV++ G+ ++ C++C+ YR ++ I D T WV++
Sbjct: 459 AFYRACP----QSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVSS 514
Query: 578 FQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKS 637
F E E+++G +++++ + ++ + K ++ FT ++FKL+ K E + D R K
Sbjct: 515 FNEVGEQLLGHTSQEVG--EALENDPAKAEQIFSALNFTSHIFKLRCKNEVYGDMTRNKL 572
Query: 638 TVVKAERYNYSSETRFILDLMDKL 661
TV N+ + +L + +L
Sbjct: 573 TVQSVAPINHKEYNKHLLKELQEL 596
>gi|193667016|ref|XP_001951063.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Acyrthosiphon pisum]
Length = 609
Score = 269 bits (688), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 161/467 (34%), Positives = 270/467 (57%), Gaps = 23/467 (4%)
Query: 206 NRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSD 265
N GL +V S I PI +L+PY KWTI+ARV K +R +NNQRG+GK+F DLLD +
Sbjct: 160 NNGLQRDIDV-SNIHPINSLSPYQNKWTIRARVVNKAPVRTWNNQRGEGKLFSMDLLD-E 217
Query: 266 GGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLC 325
GEIR T FN+ D+F+ +E K+Y ++RG++K A K F++L+ND E+ L + + C
Sbjct: 218 SGEIRATAFNSECDKFFDMIEVNKVYFITRGAIKTANKKFSNLNNDYELTLSGETQIFPC 277
Query: 326 YE-DDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNG-TETQKRTLH 383
++ DD+ +P +F+F P++ V+ ++ + +VD+IGV LM K E +KR +
Sbjct: 278 HDFDDSQMPALKFNFVPLSQVKDVDVDGIVDVIGVCQTAGELTMLMSKTTRKELKKRDVT 337
Query: 384 LRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNG-KVVGTISTTQ 442
+ D S SV +TLW D D + P++A+K R+ +F G K + + +T
Sbjct: 338 IVDQSLSSVTITLWDTQAED--------FDGSLQPVIAIKGSRIREFMGSKSLSLLGSTV 389
Query: 443 LFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPD 502
+ I PD EAHRL+ W++ N + SIS S VG + T+ + LG+ +K D
Sbjct: 390 MQINPDIDEAHRLRGWYDSLPSNAEFTSISARS-DVGANNQFLTIKGAQLAQLGSGDKAD 448
Query: 503 WITVSATIVYIKCDNFCYTACPIMIGDRP-CNKKVMNNGDGRWHCDRCDQSVVECDYRYI 561
+ ++ + ++++K ++ Y ACP +P C KKV++ DG + C++C+ YR +
Sbjct: 449 YYSMYSHLIFVKSESALYKACP-----KPDCQKKVIDRNDGTYRCEKCNDETENFKYRLM 503
Query: 562 LQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFK 621
L Q+ D TG WVT FQE AE ++G ++ +L L ++++ E++ +V +N F + +
Sbjct: 504 LSAQLSDSTGNQWVTMFQETAESLLGTTSAELGRL--MEESKEEYSDVFQNQMFKLFDIR 561
Query: 622 LKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSGDSTS 668
+ K ET+++E R+K T+ + +Y + ++ + +L SG +TS
Sbjct: 562 ARAKMETYNNETRLKVTLFSIKPIDYKVASTKLIATIKRL-SGITTS 607
Score = 44.3 bits (103), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 19/134 (14%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDG-SRSQQGMLATQRNELVTSGLLQIGSV 60
PV+QV+ ++ + + +R+R+++SDG + + MLATQ N +V+SG + S+
Sbjct: 24 PVMQVLGVRKITAA------GANERYRLLISDGHNLNSFAMLATQLNGMVSSGEINEFSI 77
Query: 61 VRLTKFTCNVIQNR-----MIVIVMDLDVII--DKC-DPIGKPVPAQRPS----SNEQPG 108
+++ + + + +R ++I++DL V++ D IG P P S N
Sbjct: 78 LQIKRHIISSLTDRSKGSKQVMILIDLAVMVPGDVVGSKIGDPKPIIDNSGQIVENGASA 137
Query: 109 SVTGNPQSNATGVS 122
SV PQSN+ S
Sbjct: 138 SVDSTPQSNSLAKS 151
>gi|428164777|gb|EKX33791.1| replication protein A1, 70kDa [Guillardia theta CCMP2712]
Length = 702
Score = 268 bits (686), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 205/698 (29%), Positives = 343/698 (49%), Gaps = 70/698 (10%)
Query: 3 VLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVR 62
V+QV+D+K + + + R+R+V+SD S Q MLATQ N +V + L +V
Sbjct: 28 VVQVIDIKKIGTNNGTSGE----RYRLVISDTSFFCQAMLATQLNGIVNAKELDKFCIVE 83
Query: 63 LTKFTCNVIQNRMIVIVMDLDVIIDKCDP----IGKPVP---AQRPSSNEQPGSVTGNPQ 115
+ CNV+Q+R IVI++ ++V K P IGKPV A PS + P
Sbjct: 84 IKDCICNVVQSRRIVIILSIEV---KGPPMAQMIGKPVSIDSAGDPSGQQSKAPQNAMPS 140
Query: 116 SNATG-----VSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEV--GAGSGSFS 168
S A S+ N + V+ P + + + +N+ + + GS SF
Sbjct: 141 SAAPSYSTAPTSVGSKNQSAVNP-PPENNYDRQRQFTQANVKSERSQGDFVNAMGSNSFQ 199
Query: 169 NQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPS--------RII 220
NQ+ N S A+ YA ++ S + + N V + P +
Sbjct: 200 NQN-DMPNRMERASNESANPYAVKTGNSFVNSSTGFPNNNQVVFNSNPVQEHERNSFKSQ 258
Query: 221 PIAALNPYMGKWTIK------------ARVTAKGELRH-YNNQ--RGDGKVFHFDLLDSD 265
P+ PY G+ I + G H + N +G+G++F+ D++D
Sbjct: 259 PMGYSGPYAGQGPISYGMGTSMNQFAGDGMKQSGSSDHAFRNTMTKGEGRLFNIDIMDHT 318
Query: 266 GGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLC 325
G +IR T FN AD+++ ++A K+Y + G++K A + FN ++ EI + S +
Sbjct: 319 G-DIRGTFFNDDADKWFPHLQANKVYKIRGGTIKQANRKFNTTSSEYEITFNRDSTFDIV 377
Query: 326 YEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGT----ETQKRT 381
+ +A P+ ++FR I ++E E S+VD++ VV + P S+ K+G+ + KR
Sbjct: 378 ADSEA--PKVSYNFRKIEEIENTEPQSIVDVLAVVHDVQPLGSVTVKSGSNAGNQIAKRD 435
Query: 382 LHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTT 441
+ L D G++++LTLW + + D + M + P++A+K RVSDFNG+ + T ++
Sbjct: 436 VSLLDTGGKTIKLTLWDD--HKDVVTENDMSN----PVIAIKGVRVSDFNGRSLSTTRSS 489
Query: 442 QLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKP 501
+ + PD EAH LK W++ GK+ ++ S+S G D RKT+SQIK E LG EKP
Sbjct: 490 MIEMNPDLQEAHLLKGWYDCHGKSAVFQAVG-GSMSSGSKDSRKTISQIKGENLGNAEKP 548
Query: 502 DWITVSATIVYIKCD-NFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRY 560
D+ T+ A + Y K D + Y A P KKV+ +GD W + Q++ C+ RY
Sbjct: 549 DYFTLRAWVTYFKHDGTWNYPANP------ETKKKVIAHGDS-WFDESTQQTIERCERRY 601
Query: 561 ILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLF 620
++ D TG W +AF + ++G +A +L LK D + + + + F Y+
Sbjct: 602 VMNLSCSDFTGSHWFSAFNDQGIALLGKTADELQELK--DSMNPDYEATWQASVFKPYVL 659
Query: 621 KLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLM 658
K++ K ET+ DE RVK T+++ + ++ I +L+
Sbjct: 660 KVRAKAETWQDETRVKCTIMEVKPVDWREGATEIRNLI 697
>gi|150863697|ref|XP_001382257.2| DNA replication factor A [Scheffersomyces stipitis CBS 6054]
gi|149384953|gb|ABN64228.2| DNA replication factor A [Scheffersomyces stipitis CBS 6054]
Length = 616
Score = 268 bits (685), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 144/454 (31%), Positives = 260/454 (57%), Gaps = 24/454 (5%)
Query: 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAV 277
+I PI L+PY WTIKARV+ KG+LR + N +G+GK+ + LD + EI+ + F V
Sbjct: 175 KITPIETLSPYQNNWTIKARVSYKGDLRTWTNAKGEGKLISVNFLD-ESDEIKASAFQDV 233
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
A + +E GK+Y +S+ ++ + K FN L + E+ +D + ++ C++ D ++P+ F
Sbjct: 234 AISAHKLLEEGKVYYISKAKVQASNKKFNTLSHPYELVMDRDTKIEECFDVD-NVPKMHF 292
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYIS-PTASLMRKNGTETQKRTLHLRDMSGRSVELTL 396
+F +N + ++ N+++D++G + ++ P + G E +R + + D +G ++++ L
Sbjct: 293 NFIKLNQIPNLDPNAIIDVLGALKIVNEPYKITAKSTGKEFDRRNVTIVDETGFAIDVGL 352
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
W N + + G I+A K+ RV DFNG+ + T + P+ PE++ LK
Sbjct: 353 WNNTATEFSI------PEG--SIIAFKSCRVQDFNGRSLTLTQTGSMLPNPNTPESYSLK 404
Query: 457 EWFEKEGKNTQSVSISRDSLSVGRADI--RKTVSQIKDEGLG--TKEKPDWITVSATIVY 512
W++ +G N ++ +S S G I RKT++Q +DE LG ++++PD+ TV A+I +
Sbjct: 405 GWYDNQGVNANFNNLKVES-SGGETKIGDRKTIAQAQDESLGLRSEKEPDYFTVKASISF 463
Query: 513 IKCD-NFCYTAC--PIMIGDR--PCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQ 567
IK D NFCY AC + +R CNKK++ D W C++CD++ + YRYIL I
Sbjct: 464 IKTDPNFCYPACTNEVQYNNRKSACNKKLVEQHDNSWRCEKCDKNYAQPTYRYILTCSIM 523
Query: 568 DHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEE 627
D T WVT F+ A +I+G A +L +L+ + F + ++ F +++F+++ K++
Sbjct: 524 DETNQIWVTLFEREALKILGKDANELIALQ---DDSAAFKDYIQEKCFQEHVFRIRAKQD 580
Query: 628 TFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
T++D+ RV+ V +Y++E + + +D L
Sbjct: 581 TYNDQVRVRYQCVALYDIDYNAEAIHLSEQLDSL 614
>gi|145234512|ref|XP_001400627.1| replication factor A protein 1 [Aspergillus niger CBS 513.88]
gi|134057574|emb|CAK37984.1| unnamed protein product [Aspergillus niger]
Length = 606
Score = 268 bits (685), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 153/447 (34%), Positives = 254/447 (56%), Gaps = 24/447 (5%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI A++PY KWTIKAR T+K +R ++N+ +G++F +LLD D GEIR T FN
Sbjct: 171 IYPIEAISPYSHKWTIKARCTSKTNIRTWHNRNTEGRLFSVNLLD-DSGEIRATGFNDQC 229
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D Y + G +Y +S ++ A+K F +L+ND E+ + ++V+ ED +P+ +F+
Sbjct: 230 DMLYDVFQEGGVYYISNCRVQIAKKQFTNLNNDYELTFERDTVVEKA-EDQTDVPQVRFN 288
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVELTLW 397
F I D++ +E ++ +D+IGV+ + K + KR L + D +G SV LT+W
Sbjct: 289 FTSIGDLQSVEKDTTIDVIGVLKEAMDVTQITSKTTNKPYDKRELIMVDNTGFSVRLTIW 348
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKE 457
G+ ++ ++A K +VSDF G+ + +S+ + ++PD EAH+LK
Sbjct: 349 GSTA--------QKFNASPESVIAFKGVKVSDFGGRSLSLLSSGSMAVDPDIEEAHKLKG 400
Query: 458 WFEKEGKN---TQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIK 514
W++ +G++ + S+ + S ++D KT++QI++E LG E+ + ++ AT++YIK
Sbjct: 401 WYDAQGRDENFSSHASLLGTASSTMKSDQFKTIAQIREEQLGMSEEAVYFSLKATVIYIK 460
Query: 515 CDN--FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
DN F Y AC CNKKV G+W C+RCD++ + DYRYI+ + DHTG
Sbjct: 461 QDNMSFAYPACL----SEGCNKKVTELDPGQWRCERCDKTHPQPDYRYIMHVNVSDHTGQ 516
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEK-FGEVVRNATFTKYLFKLKVKEETFSD 631
W++ F + +M +SA L L Q DEK G+V ++A + F+ + K + F +
Sbjct: 517 LWLSCFDDVGRSMMDISANQLMELF---QTDEKAAGDVFQDANCRTWNFRCRAKIDHFGE 573
Query: 632 EQRVKSTVVKAERYNYSSETRFILDLM 658
+QR++ V A+ NYS E + DL+
Sbjct: 574 QQRIRYQVSSAKPINYSHEAGRLADLI 600
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 68/117 (58%), Gaps = 10/117 (8%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PV+Q + +K + + QQ +R+R V SD S Q MLATQ N +V+S LL+ G V
Sbjct: 28 PVVQCVQIKPLPA-----QQSHPERYRAVFSDISNYVQTMLATQLNPMVSSKLLRKGCFV 82
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVI--IDKCDPIGKPVPAQRPSSNE---QPGSVTGN 113
RL F N ++ + I+I++DL+V+ + + + IG P P + + + QP +++ N
Sbjct: 83 RLKSFQANSVKGKKILIILDLEVLEGLGEAEKIGDPKPLESKTDEDEKHQPTTISSN 139
>gi|357603407|gb|EHJ63750.1| replication protein A1 [Danaus plexippus]
Length = 598
Score = 268 bits (684), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 149/430 (34%), Positives = 242/430 (56%), Gaps = 19/430 (4%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PIA+L+PY KW IKARV K +R ++N +G+GK+F DL D + GEIR T F D+
Sbjct: 166 PIASLSPYQNKWVIKARVMNKTAIRTWSNAKGEGKLFSMDLCD-ESGEIRATAFKNECDK 224
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
FY ++ K+Y +SR LK A K + L ND E+ ++V C E+ S+P ++ F
Sbjct: 225 FYDMIQIDKVYYISRCQLKTANKQYTTLKNDYEMTFTADTVVSECMEESNSVPSIKYDFM 284
Query: 341 PINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWGN 399
PI+D+ ++++D+IGV S L K+ G +KR L D SG ++ LTLWG
Sbjct: 285 PISDIADKGPDTILDVIGVCKSASDIQELTAKSTGKLLKKREATLVDSSGGAITLTLWGA 344
Query: 400 FCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNG-KVVGTISTTQLFIEPDFPEAHRLKEW 458
D P++AVK R+++FNG K + +++T + ++PD EAHRL+ W
Sbjct: 345 EA--------EKFDGSSNPVVAVKGARLAEFNGSKSLSCLASTIVRVQPDVEEAHRLRGW 396
Query: 459 FEKEGKNTQSVSIS-RDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDN 517
++ G + V IS R G A+ T ++ ++ LGT +K D+ ++ + + DN
Sbjct: 397 YDNGGDSMAMVHISARVGQGGGNAEWM-TFAEAEERRLGTGDKADYFSLLGVLTFTFADN 455
Query: 518 FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTA 577
Y ACP CNKK+++ +G + C++C++ YR +L + D TG VTA
Sbjct: 456 AVYKACP----QEQCNKKLVDQQNGLYRCEKCNREYPNYKYRLLLGATVSDPTGDQRVTA 511
Query: 578 FQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKS 637
F E AE ++G SA+++ L D + ++G+++ + F ++FK + K ET+SDE ++K+
Sbjct: 512 FNESAEVMLGRSAEEVGRLS--DYDKAEYGQLLDHVKFKTFVFKFRTKIETYSDEAKLKT 569
Query: 638 TVVKAERYNY 647
V+ A+ +Y
Sbjct: 570 VVMSAQPVDY 579
>gi|440795064|gb|ELR16205.1| replication factora protein 1 (rpa1) subfamily protein
[Acanthamoeba castellanii str. Neff]
Length = 553
Score = 267 bits (683), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 156/464 (33%), Positives = 246/464 (53%), Gaps = 43/464 (9%)
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
+PI LNPY +WTIKAR+T K ++R +NN RG +F DLLD+ GGEIR T F A
Sbjct: 106 MPIKGLNPYQNRWTIKARITHKSDMRPFNNARGQSFLFSVDLLDAFGGEIRCTFFGEAAT 165
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
Q+ Q+EAG+++L+ RGS+K A K F+ L ND EI LD +++Q EDD SIP +F+F
Sbjct: 166 QWNDQIEAGQVFLIGRGSVKYANKRFSTLKNDYEISLDKNALIQPT-EDDPSIPFYKFNF 224
Query: 340 RPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGN 399
I D+ G + +D++G V + + G E QKR + + D S VE+TLWG
Sbjct: 225 VDIADLGGHAKDETIDILGAVLESGAIQDIRTQAGNELQKRVVKVGDSSNAQVEVTLWGE 284
Query: 400 ----FCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRL 455
+ D GL ++ K ++SD+N + + + T++L EP PEA R+
Sbjct: 285 QAAQWSGDRGL------------VVLFKGVKISDYNQRSLTVLRTSKLEFEPRIPEADRV 332
Query: 456 KEWFEKEGKNTQSVSISRDSLSVGRA---------------DIRKTVSQIKDEGLGTKEK 500
+EWFE G+ + S+SR+ + RK+ + +K G +E
Sbjct: 333 REWFETAGQG-EVASMSRNDFKGRGGGGEGGFGGGDKRPWDETRKSFAAVKQVAFGGQES 391
Query: 501 PDWITVSATIVYIKCDNF---CYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECD 557
+ +V AT+ IK Y ACP CNKKV + G G +HC +C +
Sbjct: 392 V-YFSVRATVTEIKHSRDHPPWYEACPT----EKCNKKVTSVG-GAYHCTKCGATHDHYK 445
Query: 558 YRYILQFQIQDHTGLTWVTAFQECAEEIM-GMSAKDLYSLKYVDQNDEKFGEVVRNATFT 616
RY+L DH+G +W+T F + A +++ G +A DL + Q + ++ +V + A F
Sbjct: 446 PRYVLSLNANDHSGSSWLTCFNDTASDVLNGTTADDLLEMLSRPQGESQYEDVFQKALFK 505
Query: 617 KYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDK 660
Y +++ + + E +VK +VVK +Y+ E++F+++ + K
Sbjct: 506 SYNLRVRATQSEYEGENKVKLSVVKVIPMDYAKESKFLINSIAK 549
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++QV+D+K ++ Q +R+R+V+SDG QQ MLATQ NELV G LQ +V
Sbjct: 22 PLVQVIDVKKILGPNGQATS--PERYRLVISDGIHFQQAMLATQLNELVNDGKLQPKCIV 79
Query: 62 RLTKFTCNVIQNR 74
RL ++ CN + R
Sbjct: 80 RLNEYICNTVHGR 92
>gi|350635289|gb|EHA23651.1| hypothetical protein ASPNIDRAFT_174835 [Aspergillus niger ATCC
1015]
Length = 592
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 153/447 (34%), Positives = 254/447 (56%), Gaps = 24/447 (5%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI A++PY KWTIKAR T+K +R ++N+ +G++F +LLD D GEIR T FN
Sbjct: 157 IYPIEAISPYSHKWTIKARCTSKTNIRTWHNRNTEGRLFSVNLLD-DSGEIRATGFNDQC 215
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D Y + G +Y +S ++ A+K F +L+ND E+ + ++V+ ED +P+ +F+
Sbjct: 216 DMLYDVFQEGGVYYISNCRVQIAKKQFTNLNNDYELTFERDTVVEKA-EDQTDVPQVRFN 274
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVELTLW 397
F I D++ +E ++ +D+IGV+ + K + KR L + D +G SV LT+W
Sbjct: 275 FTSIGDLQSVEKDTTIDVIGVLKEAMDVTQITSKTTNKPYDKRELIMVDNTGFSVRLTIW 334
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKE 457
G+ ++ ++A K +VSDF G+ + +S+ + ++PD EAH+LK
Sbjct: 335 GS--------TAQKFNASPESVIAFKGVKVSDFGGRSLSLLSSGSMAVDPDIEEAHKLKG 386
Query: 458 WFEKEGKN---TQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIK 514
W++ +G++ + S+ + S ++D KT++QI++E LG E+ + ++ AT++YIK
Sbjct: 387 WYDAQGRDENFSSHASLLGTASSTMKSDQFKTIAQIREEQLGMSEEAVYFSLKATVIYIK 446
Query: 515 CDN--FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
DN F Y AC CNKKV G+W C+RCD++ + DYRYI+ + DHTG
Sbjct: 447 QDNMSFAYPACL----SEGCNKKVTELDPGQWRCERCDKTHPQPDYRYIMHVNVSDHTGQ 502
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEK-FGEVVRNATFTKYLFKLKVKEETFSD 631
W++ F + +M +SA L L Q DEK G+V ++A + F+ + K + F +
Sbjct: 503 LWLSCFDDVGRSMMDISANQLMELF---QTDEKAAGDVFQDANCRTWNFRCRAKIDHFGE 559
Query: 632 EQRVKSTVVKAERYNYSSETRFILDLM 658
+QR++ V A+ NYS E + DL+
Sbjct: 560 QQRIRYQVSSAKPINYSHEAGRLADLI 586
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 68/117 (58%), Gaps = 10/117 (8%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PV+Q + +K + + QQ +R+R V SD S Q MLATQ N +V+S LL+ G V
Sbjct: 14 PVVQCVQIKPLPA-----QQSHPERYRAVFSDISNYVQTMLATQLNPMVSSKLLRKGCFV 68
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVI--IDKCDPIGKPVPAQRPSSNE---QPGSVTGN 113
RL F N ++ + I+I++DL+V+ + + + IG P P + + + QP +++ N
Sbjct: 69 RLKSFQANSVKGKKILIILDLEVLEGLGEAEKIGDPKPLESKTDEDEKHQPTTISSN 125
>gi|392871535|gb|EJB12180.1| replication factor-a protein 1 (rpa1), variant [Coccidioides
immitis RS]
Length = 572
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 151/424 (35%), Positives = 242/424 (57%), Gaps = 22/424 (5%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
+ I PI AL+PY KWTIKAR T K ++ + N+ G+G++F +LLD D GEIR T F
Sbjct: 165 ANIYPIEALSPYSHKWTIKARCTNKSAIKKWYNRNGEGRLFSVNLLD-DSGEIRATAFKE 223
Query: 277 VADQFYHQVEAGKIYLVSRGS-LKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQ 335
D Y E G +Y +S ++ A++ F++++ND E+ + ++++ ED +P+
Sbjct: 224 QCDLLYPLFEEGSVYYISSPCRVQMAKREFSNVNNDYELTFERDTVIERA-EDHEDVPQM 282
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVEL 394
+F+F I + +E + +D++GV+ + P A + K+ G KR L L D +G SV L
Sbjct: 283 RFNFTSIGHLHSVEKGTTIDVLGVLKTVEPVAEVPSKSTGKRYTKRELMLVDDTGYSVPL 342
Query: 395 TLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
T+WG M DS ++A K +VSDF G+ + +++ + +PD EAH+
Sbjct: 343 TIWGGMATS----FDVMPDS----VVAFKGVKVSDFGGRSLSLLNSGTITSDPDIEEAHK 394
Query: 455 LKEWFEKEGKNTQ--SVSISRDS-LSVG-RADIRKTVSQIKDEGLGTKEKPDWITVSATI 510
LK W++ +GK Q + ++S ++ +S G R DI K + +++D LG EKPD+ ++ AT+
Sbjct: 395 LKGWYDAQGKFDQFATHALSENAAISTGTRQDIYKAIVEVRDNQLGMTEKPDYFSLRATV 454
Query: 511 VYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHT 570
V+IK D CY AC + +R CNKKV+ +W C+ C++S + +YRYIL + DHT
Sbjct: 455 VFIKQDTICYPAC---VQER-CNKKVVQVDPEQWLCEHCEKSSLRPEYRYILSANVSDHT 510
Query: 571 GLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFS 630
G W+ F E IMGM A L LK + +D+ E + +AT + K K K + F
Sbjct: 511 GQLWLNCFDEVGRAIMGMPANVLMELK--ESDDKAASEAILHATCQMWNLKCKAKLDNFQ 568
Query: 631 DEQR 634
++ R
Sbjct: 569 NQPR 572
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 7/126 (5%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++Q + +KL+ S R+R V SD S Q MLA+ N+LV +G L+ G V
Sbjct: 24 PIVQCLHVKLLSSPSGGPD-----RYRAVFSDISNFVQTMLASSLNDLVNNGALRRGCFV 78
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIID--KCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
+L F N ++ + I+IV+DLDV+ D +C+ IG P P + + + + T
Sbjct: 79 QLKSFQANFVKGKRILIVLDLDVLEDLGECERIGDPKPLETKVAEVEKPTPTAISSDGFY 138
Query: 120 GVSLQH 125
GV +H
Sbjct: 139 GVVSEH 144
>gi|194904079|ref|XP_001980997.1| GG17466 [Drosophila erecta]
gi|190652700|gb|EDV49955.1| GG17466 [Drosophila erecta]
Length = 603
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 147/444 (33%), Positives = 244/444 (54%), Gaps = 18/444 (4%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PI++L+PY KW IKARVT+K +R ++N RG+GK+F DL+D + GEIR T F D+
Sbjct: 168 PISSLSPYQNKWVIKARVTSKSGIRTWSNARGEGKLFSMDLMD-ESGEIRATAFKEQCDK 226
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE-DDASIPRQQFHF 339
F+ ++ +Y +S+ LKPA K ++ L+N E+ ++VQLC + DD IP +++
Sbjct: 227 FFDLIQVDSVYYISKCQLKPANKQYSSLNNAYEMTFSGETVVQLCDDTDDDPIPEIKYNL 286
Query: 340 RPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWG 398
PI+DV GMEN + VD IG+ + S + R E +KR + L DMS ++ LTLWG
Sbjct: 287 IPISDVSGMENKAAVDTIGICKEVGELQSFVARTTNKEFKKREITLVDMSNSAISLTLWG 346
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLF-IEPDFPEAHRLKE 457
D+ + D V P++ VK R+++FNG ++ + I PD PEAH+L+
Sbjct: 347 ----DEAVNF----DGHVQPVILVKGSRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRG 398
Query: 458 WFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDN 517
WF+ G + + +S + + T+ + LG+ +KPD+ A + +K +N
Sbjct: 399 WFDNGGGDNVANMVSARTGGGNFSTEWMTLKDARARNLGSGDKPDYFQCKAVVHIVKQEN 458
Query: 518 FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTA 577
Y ACP CNKKV++ G+ ++ C++C+ YR ++ I D T WV++
Sbjct: 459 AFYRACP----QSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVSS 514
Query: 578 FQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKS 637
F E E+++G +++++ + ++ + K ++ FT ++FKL+ K E F D R K
Sbjct: 515 FNEVGEQLLGHTSQEVG--EALENDPAKAEQIFSALNFTSHIFKLRCKNEVFGDMTRNKL 572
Query: 638 TVVKAERYNYSSETRFILDLMDKL 661
TV N+ + +L + +L
Sbjct: 573 TVQSVAPINHKEYNKHLLKELKEL 596
>gi|358367561|dbj|GAA84179.1| replication factor A 1, Rfa1 [Aspergillus kawachii IFO 4308]
Length = 606
Score = 266 bits (680), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 153/448 (34%), Positives = 255/448 (56%), Gaps = 24/448 (5%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI A++PY KWTIKAR T+K ++ ++N+ +G++F +LLD D GEIR T FN
Sbjct: 171 IYPIEAISPYSHKWTIKARCTSKTNIKTWHNRNTEGRLFSVNLLD-DSGEIRATGFNDQC 229
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D Y + G +Y +S ++ A+K F +L+ND E+ + ++V+ ED + +P+ +F+
Sbjct: 230 DMLYDVFQEGGVYYISNCRVQIAKKQFTNLNNDYELTFERDTVVEKA-EDQSDVPQVRFN 288
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVELTLW 397
F I D++ +E ++ +D+IGV+ + + K + KR L + D +G SV LT+W
Sbjct: 289 FTSIGDLQSVEKDTTIDVIGVLKEDMGVSQITSKTTNKPYNKRELVMVDNTGFSVRLTIW 348
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKE 457
G + + +S ++A K +VSDF G+ + +S+ + ++PD EAH+LK
Sbjct: 349 GTTAQN----FNALPES----VIAFKGVKVSDFGGRSLSLLSSGSMAVDPDIEEAHKLKG 400
Query: 458 WFEKEGKN---TQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIK 514
W++ +G+ + S+ + S ++D KT++QI++E LG E+ + ++ AT++YIK
Sbjct: 401 WYDAQGRAENFSSHASLLGAASSTMKSDQFKTIAQIREEQLGMSEEAVYFSLKATVIYIK 460
Query: 515 CDN--FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
DN F Y AC CNKKV G+W C+RCD++ DYRYI+ + DHTG
Sbjct: 461 QDNMSFAYPACL----SEKCNKKVTELDPGQWRCERCDKTHPRPDYRYIMHVNVSDHTGQ 516
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEK-FGEVVRNATFTKYLFKLKVKEETFSD 631
W++ F + + +M MSA L L Q DEK G+ ++A + F+ + K + F +
Sbjct: 517 LWLSCFDDVGKSMMDMSANQLMELF---QTDEKAAGDAFQDANCRTWNFRCRAKIDHFGE 573
Query: 632 EQRVKSTVVKAERYNYSSETRFILDLMD 659
+QR++ V A NYS E + DL++
Sbjct: 574 QQRIRYQVSSANPINYSQEASRLADLIE 601
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 68/117 (58%), Gaps = 10/117 (8%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++Q + +K + S QQ +R+R V SD S Q MLATQ N +V+S LL+ G V
Sbjct: 28 PIVQCVQIKQLPS-----QQSHPERYRAVFSDISNYVQTMLATQLNPMVSSELLRKGCFV 82
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVI--IDKCDPIGKPVPAQRPSSNE---QPGSVTGN 113
RL F N ++ + I+I++DL+V+ + + IG+P P + + + QP +++ N
Sbjct: 83 RLKSFQANSVKGKKILIILDLEVLEGLGVAEKIGEPKPLESKTDEDDKHQPTTISSN 139
>gi|327301885|ref|XP_003235635.1| replication factor A 1 [Trichophyton rubrum CBS 118892]
gi|326462987|gb|EGD88440.1| replication factor A 1 [Trichophyton rubrum CBS 118892]
Length = 598
Score = 266 bits (680), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 149/440 (33%), Positives = 249/440 (56%), Gaps = 23/440 (5%)
Query: 217 SRIIPIAALNPYMG-KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFN 275
+ I I AL+P+ KWTIKAR T K ++ + N G+GK+F +LLD D GEIR T F
Sbjct: 163 ANIFSIEALSPFANNKWTIKARCTHKSNIKTWKNTFGEGKLFSVNLLD-DSGEIRATAFK 221
Query: 276 AVADQFYHQVEAGKIYLVSRG-SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPR 334
D Y E G +Y +S ++K A+K F++++ND E+ D ++V+ ED +P+
Sbjct: 222 DQCDLLYPIFEEGAVYYISSPCTVKMAKKEFSNVNNDYELTFDRDTVVEKA-EDQNDVPQ 280
Query: 335 QQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVE 393
+F+F + D++ ++ + +D++G++ + T+ + K G KR L L D SG SV
Sbjct: 281 IRFNFTSLGDLQSIDKGTTIDVLGILKDVDATSQVTSKTTGKPYDKRELTLVDNSGFSVR 340
Query: 394 LTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAH 453
LT+WGN + D+ ++A K +VSDF G+ + +S+ + ++PD EAH
Sbjct: 341 LTVWGNTATN--------FDTPPESVVAFKGVKVSDFGGRTLSLLSSGTVTVDPDIEEAH 392
Query: 454 RLKEWFEKEGKNTQSVSISRDSLSVGRAD--IRKTVSQIKDEGLGTKEKPDWITVSATIV 511
RLK W++ +GK+ + S + G KT+S+I+DE + + + + ++ AT++
Sbjct: 393 RLKGWYDAQGKSNSFTAYSSGATGGGGGSWPTFKTISEIRDEEIPSADSFESFSLKATVI 452
Query: 512 YIKCDNFCYTACPIMIGDRPCNKKVMNNGD-GRWHCDRCDQSVVECDYRYILQFQIQDHT 570
++K DN CY ACP + C K + GD +WHC+RC++S YRYIL DHT
Sbjct: 453 HVK-DNLCYPACP----NEACKNKKVTRGDLDQWHCERCERSYANPKYRYILSLNACDHT 507
Query: 571 GLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFS 630
G W++ F E + I GM+A +L +K +++D E+ + AT+ + FK + K +T+
Sbjct: 508 GQIWLSCFDEAGQMIFGMTADELMKIK--EEDDAAANEITKGATYCTWNFKCRAKLDTYQ 565
Query: 631 DEQRVKSTVVKAERYNYSSE 650
++QR + V A +Y++E
Sbjct: 566 EQQRTRYNVYAATPIDYATE 585
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 72/128 (56%), Gaps = 10/128 (7%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P+LQ + +K VV ++Q R+ +V SD + + ML TQ N VT G+L+ GS V
Sbjct: 24 PILQCLRIKPVVVREQD-------RYGVVFSDVNHFVRTMLPTQLNSYVTDGILRRGSFV 76
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVI--IDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
RLT F +V++ + ++I+M L+V+ + + + IG P P + P S ++ G + SN
Sbjct: 77 RLTNFQVSVVKGKHLLIIMGLEVLSALGEAERIGDPKPLE-PKSGDEMGGQSTTLSSNEF 135
Query: 120 GVSLQHHN 127
+ Q HN
Sbjct: 136 YNAPQPHN 143
>gi|302799733|ref|XP_002981625.1| hypothetical protein SELMODRAFT_114787 [Selaginella moellendorffii]
gi|300150791|gb|EFJ17440.1| hypothetical protein SELMODRAFT_114787 [Selaginella moellendorffii]
Length = 566
Score = 266 bits (680), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 159/465 (34%), Positives = 253/465 (54%), Gaps = 27/465 (5%)
Query: 215 VPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCF 274
V R+ P+ +L PY G WTIK RVT+KG LR Y N RG+G VF+ +L D DG +I+ T F
Sbjct: 112 VSRRVYPLVSLTPYQGSWTIKVRVTSKGPLRTYRNARGEGSVFNVELTDEDGTQIQATMF 171
Query: 275 NAVADQFYHQVEAGK-------IYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE 327
A++FY E GK +Y VS G+L+ A + F+ + ND E+ L+ +S V+ E
Sbjct: 172 KEAAEKFYPMFELGKATSFLYQVYYVSNGNLRMANRQFSAVKNDYEMTLNASSGVEEVTE 231
Query: 328 DDAS---IPRQQFHFRPINDVEGMENN-SVVDLIGVVSYISPTASLMRK-NGTETQKRTL 382
D IP +++F I D+ N + D IG+V +S T S+ RK + TE KR +
Sbjct: 232 PDGKPGVIPLVKYNFVKIEDLAAYVNKRELFDAIGIVQSVSSTMSVRRKVDNTEFAKREI 291
Query: 383 HLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKV-VGTISTT 441
L D S ++V ++LW + +DG +L M P++ +++ R +DF V + T +
Sbjct: 292 VLVDQSQKTVAVSLWSSLAVEDGAKLLEMLPDA--PVVVIRSVRANDFQAGVSLSTSPNS 349
Query: 442 QLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRD-SLSVGRA-DIRKTVSQIKDEGLGTKE 499
++I PD PEA L+ W+++ GK+ S+ S G A D R +S I +G +
Sbjct: 350 MVWINPDIPEARELRSWYDESGKDATLTSVGAGLSQRAGSANDNRADISDITAPSVG-EG 408
Query: 500 KPDWITVSATIVYIKCD-NFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDY 558
K + TV A I YIK D YTAC CN+KV + W C+ C +
Sbjct: 409 KAAYFTVRACISYIKPDQTMWYTACST------CNRKVSEDSSRFW-CEACQRHFDTASR 461
Query: 559 RYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKY 618
RYI+ ++ DH+G WV+ F + AE+I+G+SA +L ++K D + ++ + ++ Y
Sbjct: 462 RYIMLAKLTDHSGDAWVSFFNDQAEQILGVSADELATIKSQDDDQRQYSSQLSKVVWSSY 521
Query: 619 LFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKS 663
+F++ V + + E+R + T+ +++SE+R +L M KL+S
Sbjct: 522 VFRVSVAQTEYLGEKRQRITIRAVNDTDWASESRLLLAKM-KLES 565
>gi|121715180|ref|XP_001275199.1| replication factor A 1, rfa1 [Aspergillus clavatus NRRL 1]
gi|119403356|gb|EAW13773.1| replication factor A 1, rfa1 [Aspergillus clavatus NRRL 1]
Length = 603
Score = 266 bits (680), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 151/445 (33%), Positives = 258/445 (57%), Gaps = 21/445 (4%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI ++P+ KWTIKAR T+K ++ ++N+ +G++F +LLD D GEIR T FN
Sbjct: 169 IYPIEYISPFSNKWTIKARCTSKSTIKTWHNRNSEGRLFSVNLLD-DSGEIRATGFNEQC 227
Query: 279 DQFYHQVEAGKIYLVSR-GSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
D Y + G +Y +S ++ A+K F +L+ND EI + ++V+ ED + +P+ +F
Sbjct: 228 DMLYDVFQEGGVYYISTPCRVQIAKKQFTNLNNDYEITFERGTVVEKA-EDQSDVPQVRF 286
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTET-QKRTLHLRDMSGRSVELTL 396
+F + D++ +E ++ +D++GV+ + + ++ K+ + KR L L D SG SV LT+
Sbjct: 287 NFTTVGDLQSVEKDTTIDVVGVLKEVGEISQIVSKSTNKPYDKRELTLVDSSGFSVRLTV 346
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
WG L +S ++A K +VSDF G+ + +S+ + I+PD EAHRLK
Sbjct: 347 WGT----TALNFSATPES----VIAFKGVKVSDFGGRSLSLLSSGSMTIDPDIEEAHRLK 398
Query: 457 EWFEKEGKN---TQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYI 513
W++ +G++ + S+S S S G+ D KTV+QI++E LG ++ + + AT++YI
Sbjct: 399 GWYDAQGRHETFSSHASMSSASSSAGKLDRFKTVAQIREEQLGMSDEAAYFSCRATVIYI 458
Query: 514 KCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLT 573
K D CY AC + CNKKV G+W C+ CD++ + +YRYI+ + DHTG
Sbjct: 459 KQDTICYPACL----SQGCNKKVTELDPGQWRCESCDKTHLRPEYRYIMLINVSDHTGQL 514
Query: 574 WVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQ 633
W++ F E +++G+SA +L ++ + N GEV + A + F+ + K + + D+
Sbjct: 515 WLSCFDEVGRQLLGISADELMDMRQSESN--LAGEVFQEANCRTWNFRCRAKLDHYGDQP 572
Query: 634 RVKSTVVKAERYNYSSETRFILDLM 658
R++ V A+ NYS E +++L+
Sbjct: 573 RIRYQVSSAKAINYSEEASRLMNLI 597
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 73/133 (54%), Gaps = 18/133 (13%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++Q + +K + Q + +R+R V SD + Q MLATQ N VTSG+L+ G V
Sbjct: 28 PIVQCVQIKPLPP-----QPNHPERYRAVFSDITNYVQTMLATQANHFVTSGMLKKGCFV 82
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVI--IDKCDPIGKPVPAQRPSSNE---QPGSVTGN--- 113
RL F N ++ + I+I++DL+V+ + + + IG+P P + S E QP +++ N
Sbjct: 83 RLKSFQANSVKGKKILIILDLEVLQELGEAEKIGEPKPLENKSDVEEKPQPTTISSNGFY 142
Query: 114 -----PQSNATGV 121
PQ +GV
Sbjct: 143 GSKIQPQRVESGV 155
>gi|396498991|ref|XP_003845364.1| similar to replication protein A 70 kDa DNA-binding subunit
[Leptosphaeria maculans JN3]
gi|312221945|emb|CBY01885.1| similar to replication protein A 70 kDa DNA-binding subunit
[Leptosphaeria maculans JN3]
Length = 611
Score = 266 bits (679), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 163/492 (33%), Positives = 271/492 (55%), Gaps = 26/492 (5%)
Query: 187 SNYARTPQAPYMQSP--SMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGEL 244
+N+ AP Q+P S+ ++ G S P + PI +L+PY KWTI+AR T+K ++
Sbjct: 135 NNFYGNKPAPAAQAPQRSLPVHQSNPGTSSHP-HLYPIESLSPYAHKWTIRARCTSKSDM 193
Query: 245 RHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVS---RGSLKPA 301
+ ++N +G GK+F +LLD D GEIR T F VAD+ + E G +Y +S R +L A
Sbjct: 194 KEWHNAKGSGKLFSVNLLD-DTGEIRATAFTEVADKLFPVFEEGVVYYISAPCRVTL--A 250
Query: 302 QKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVS 361
+KNF++L ND E+ + + V+ ED + P+ +F+F I D++ +E +S +D IGV+
Sbjct: 251 KKNFSNLPNDYELQFERDTEVEKA-EDQENKPQIRFNFTKIGDLDSVEKDSTIDTIGVLK 309
Query: 362 YISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPIL 420
+ A++ KN + KR L L D S SV LT+WG + ++ + IL
Sbjct: 310 EVGEVATITSKNTNKDFSKRELTLADDSQTSVRLTIWG--------KTAESFEAPLESIL 361
Query: 421 AVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKN-TQSVSISRDSLSVG 479
A K +VSDF G+ + +S+ + ++PD EAH+L+ WF G+N T S + S S G
Sbjct: 362 AFKGVKVSDFGGRSLSLLSSGSMMVDPDIDEAHKLRGWFNAVGQNATFSTHNNLASSSGG 421
Query: 480 RADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNN 539
+ K +SQI +E ++ P ++++ A++VY+K Y AC CNKKV+
Sbjct: 422 SKNESKLISQIMEEESYLQDTPTYLSLRASVVYVKNTTVAYPAC----STPGCNKKVIEE 477
Query: 540 GDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYV 599
G W C++C ++ E YRY+L + DHTG W++ F E + I+GMSA + +K
Sbjct: 478 NPGAWWCEKCQKTYPEPLYRYVLSVNVADHTGTLWLSCFDEAGQTIVGMSANEAMKMKTD 537
Query: 600 DQND--EKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDL 657
D+++ + F ++ AT + F+++ K ET+ D+ + + V+ NY+ E + L
Sbjct: 538 DEDNGTQNFLTAMQEATCKTFNFRVRGKMETYQDQPKPRYQVLNLYPLNYAQEANKLAQL 597
Query: 658 MDKLKSGDSTSF 669
+ + + + F
Sbjct: 598 IKQYDLNEDSLF 609
Score = 72.8 bits (177), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 73/114 (64%), Gaps = 5/114 (4%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P+LQ + +K + K + + QRFR+VLSD Q M+AT N++VTSG L+ GS+V
Sbjct: 25 PILQCVQIKPMEPKAGEP--NPVQRFRVVLSDIRNFIQTMIATTANDIVTSGQLKKGSIV 82
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIID--KCDPIGKPVPAQRPSSNEQPGSVTGN 113
RL K+ ++++ I+I+M+L+V+ + + + IG+P A ++ QP +++GN
Sbjct: 83 RLLKYNPQRVKDKNILIIMELEVLSEYGELEKIGQP-EALETRADTQPAAISGN 135
>gi|356564937|ref|XP_003550703.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Glycine max]
Length = 600
Score = 265 bits (677), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 150/469 (31%), Positives = 256/469 (54%), Gaps = 17/469 (3%)
Query: 204 YANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLD 263
+ N + + R+ P+ +LNPY G WTIK VT+KG +R+Y N RGDG VF+ +L D
Sbjct: 140 HGNSAPAARMAMTRRVRPLVSLNPYQGNWTIKVSVTSKGNMRNYKNARGDGCVFNVELTD 199
Query: 264 SDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQ 323
DG +I+ T FN A +FY + G++Y +S+G+LK A K F + ND E+ L+ S V+
Sbjct: 200 EDGTQIQATMFNNAARKFYDKFILGRVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVE 259
Query: 324 LCYEDDASIPRQQFHFRPINDVEGMENNS-VVDLIGVVSYISPTASLMRKNGTET-QKRT 381
+ + +P +F+F I+ + N S +VD+IG+V +S T ++ RK+ E+ KR
Sbjct: 260 EVAGEASFVPETKFNFVQIDQLGPHVNKSELVDVIGIVKNVSSTMTIRRKSDNESIPKRD 319
Query: 382 LHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTT 441
+ + D + ++V ++LW G L + D P++A+K+ +V DF G + TI +
Sbjct: 320 ITIADDTKKTVVVSLWNELATTTGQELLDIVDKS--PVVAIKSLKVGDFQGVSLSTIGKS 377
Query: 442 QLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKT------VSQIKDEGL 495
+ + P PEA L+ W++ EGK+ S+ S IR +S I
Sbjct: 378 VVLVNPVIPEAKNLRSWYDFEGKDAAMDSVGSGSSPTSNNGIRSVYTDRVLLSDITSNPS 437
Query: 496 GTKEKPDWITVSATIVYIKCDN-FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVV 554
KP + ++ I +IK D Y AC + CNKKV + + CD C +S
Sbjct: 438 LGDGKPAFFSLRGHISFIKPDQAMWYRAC------KTCNKKVTESVGSGYLCDGCQKSDE 491
Query: 555 ECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNAT 614
+C RYI+ ++ D + T+++AF + AE+I+G SA DL +LK + + ++ AT
Sbjct: 492 QCSLRYIMVAKVSDASAETYISAFNQEAEKIIGCSADDLDNLKSQEGEVNPYQMTLKEAT 551
Query: 615 FTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKS 663
+ ++LF++ V ++ E+R + TV ++++E+RF+L+ + K+++
Sbjct: 552 WAQHLFRVSVTPNEYNGEKRQRITVRAVVPVDFAAESRFLLEDLSKMRA 600
>gi|351704190|gb|EHB07109.1| Replication protein A 70 kDa DNA-binding subunit [Heterocephalus
glaber]
Length = 514
Score = 265 bits (676), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 150/428 (35%), Positives = 236/428 (55%), Gaps = 57/428 (13%)
Query: 232 WTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIY 291
WT+ ARVT K ++R ++N RG+GK+F +L+D + GEIR T FN D+F+ +E K+Y
Sbjct: 131 WTVCARVTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVY 189
Query: 292 LVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENN 351
S+G+LK A K F + ND E+ + + V C EDD +P QF F I D+E +
Sbjct: 190 YFSKGTLKIANKQFTAVKNDYEMTFNNETSVVPC-EDDHHLPTVQFDFTGIGDLENKSKD 248
Query: 352 SVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCND-DGLRLQ 409
S++D+IG+ SY T ++ + E KR ++L DMSG+ V TLWG + DG R
Sbjct: 249 SLIDIIGICKSYEDATKITVKSSNREVAKRNIYLMDMSGKVVTATLWGEDADKFDGSRQ- 307
Query: 410 HMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSV 469
P++A+K RVSDF G+ + +S++ + + PD PEA++L+ WF+ EG+ V
Sbjct: 308 --------PVMAIKGARVSDFGGRTLSVLSSSTIIMNPDIPEAYKLRGWFDAEGQALDGV 359
Query: 470 SISR-DSLSVGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMI 527
SIS S +G ++ KT+ ++K E LG +K D+ + AT+VY++ +N Y ACP
Sbjct: 360 SISDLKSGGLGASNTNWKTLYEVKSENLGQGDKADYFSSVATVVYLRKENCMYQACPT-- 417
Query: 528 GDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMG 587
+ CNKKV++ +G + C++CD+ YR IL
Sbjct: 418 --QDCNKKVIDQQNGLYRCEKCDREFPNFKYRMIL------------------------- 450
Query: 588 MSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNY 647
N++ F EV +NA F ++FK++VK ET++DE R+K+TV+ + +Y
Sbjct: 451 -------------SNEQAFEEVFQNANFRSFMFKIRVKLETYNDESRIKATVMDVKPVDY 497
Query: 648 SSETRFIL 655
R ++
Sbjct: 498 RDYGRRLI 505
>gi|195145076|ref|XP_002013522.1| GL24182 [Drosophila persimilis]
gi|194102465|gb|EDW24508.1| GL24182 [Drosophila persimilis]
Length = 603
Score = 265 bits (676), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 150/451 (33%), Positives = 243/451 (53%), Gaps = 18/451 (3%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PI++L+PY KW IKARVT+K +R ++N RG+GK+F DL+D + GEIR T F D+
Sbjct: 167 PISSLSPYQNKWVIKARVTSKTGIRTWSNPRGEGKLFSMDLMD-ESGEIRATAFKEQCDK 225
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE-DDASIPRQQFHF 339
++ ++ +Y S+ LKPA K F+ L+N E+ + VQLC + DD +IP +++
Sbjct: 226 YFDMIQVDSVYFFSKCQLKPANKQFSQLNNAYEMTFTGETAVQLCEDADDGAIPDIKYNL 285
Query: 340 RPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWG 398
PI++V GMEN + VD IG+ + + R E +KR L L DMS ++ LTLWG
Sbjct: 286 VPISEVSGMENKAAVDTIGICKEVGELQAFTSRTTNKEFKKRDLTLVDMSNSAISLTLWG 345
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLF-IEPDFPEAHRLKE 457
DD + D V P++ VK R+++FNG ++ + I PD PEAH+L+
Sbjct: 346 ----DDAVNF----DGHVQPVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRG 397
Query: 458 WFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDN 517
WF+ G + + +S + + T+ + LG+ +KPD+ A + +K +N
Sbjct: 398 WFDNGGGDNVANMVSARTGGGSFSTDWMTLKDARARNLGSGDKPDYFQCKAVVHIVKQEN 457
Query: 518 FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTA 577
Y ACP CNKKV++ G+ ++ C+RC+ YR ++ + D T WVT
Sbjct: 458 AFYRACP----QADCNKKVVDEGNDQYRCERCNALYPNFKYRLLVNMSVGDWTSNRWVTC 513
Query: 578 FQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKS 637
F E E+++ +++++ + ++ + K E+ FT ++FKL+ K E + D R K
Sbjct: 514 FNETGEQLLKHTSQEIG--EALENDPTKAEEIFSALNFTSHIFKLRCKNEVYGDMTRNKL 571
Query: 638 TVVKAERYNYSSETRFILDLMDKLKSGDSTS 668
TV N+ R +L + +L S+S
Sbjct: 572 TVQSVGPLNHKEYNRHLLKELKELTGIGSSS 602
Score = 43.1 bits (100), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 61/113 (53%), Gaps = 14/113 (12%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSR-SQQGMLATQRNELVTSGLLQIGSV 60
PVLQ++ +K + S + R+R+++SDG + MLA+Q NE+ G L ++
Sbjct: 23 PVLQILAIKKINSNADAE------RYRILISDGKYFNSYAMLASQLNEMQHKGQLDEFTI 76
Query: 61 VRLTKFTCNVI----QNRMIVIVMDLDVI---IDKCDPIGKPVPAQRPSSNEQ 106
V+L K+ +++ + ++I+ +L V+ + + IG+PV + + ++
Sbjct: 77 VQLDKYVTSMVGKDGAGKRVLIISELTVLNAGAEVKEKIGEPVTYENAAKQDK 129
>gi|198452404|ref|XP_001358758.2| GA21928 [Drosophila pseudoobscura pseudoobscura]
gi|198131919|gb|EAL27901.2| GA21928 [Drosophila pseudoobscura pseudoobscura]
Length = 603
Score = 265 bits (676), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 150/451 (33%), Positives = 243/451 (53%), Gaps = 18/451 (3%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PI++L+PY KW IKARVT+K +R ++N RG+GK+F DL+D + GEIR T F D+
Sbjct: 167 PISSLSPYQNKWVIKARVTSKTGIRTWSNPRGEGKLFSMDLMD-ESGEIRATAFKEQCDK 225
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE-DDASIPRQQFHF 339
++ ++ +Y S+ LKPA K F+ L+N E+ + VQLC + DD +IP +++
Sbjct: 226 YFDMIQVDSVYFFSKCQLKPANKQFSQLNNAYEMTFTGETAVQLCEDADDGAIPDIKYNL 285
Query: 340 RPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWG 398
PI++V GMEN + VD IG+ + + R E +KR L L DMS ++ LTLWG
Sbjct: 286 VPISEVSGMENKAAVDTIGICKEVGELQAFTSRTTNKEFKKRDLTLVDMSNSAISLTLWG 345
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLF-IEPDFPEAHRLKE 457
DD + D V P++ VK R+++FNG ++ + I PD PEAH+L+
Sbjct: 346 ----DDAVNF----DGHVQPVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRG 397
Query: 458 WFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDN 517
WF+ G + + +S + + T+ + LG+ +KPD+ A + +K +N
Sbjct: 398 WFDNGGGDNVANMVSARTGGGSFSTDWMTLKDARARNLGSGDKPDYFQCKAVVHIVKQEN 457
Query: 518 FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTA 577
Y ACP CNKKV++ G+ ++ C+RC+ YR ++ + D T WVT
Sbjct: 458 AFYRACP----QADCNKKVVDEGNDQYRCERCNALYPNFKYRLLVNMSVGDWTSNRWVTC 513
Query: 578 FQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKS 637
F E E+++ +++++ + ++ + K E+ FT ++FKL+ K E + D R K
Sbjct: 514 FNETGEQLLKHTSQEIG--EALENDPTKAEEIFSALNFTSHIFKLRCKNEVYGDMTRNKL 571
Query: 638 TVVKAERYNYSSETRFILDLMDKLKSGDSTS 668
TV N+ R +L + +L S+S
Sbjct: 572 TVQSVGPLNHKEYNRHLLKELKELTGIGSSS 602
Score = 43.1 bits (100), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 61/113 (53%), Gaps = 14/113 (12%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSR-SQQGMLATQRNELVTSGLLQIGSV 60
PVLQ++ +K + S + R+R+++SDG + MLA+Q NE+ G L ++
Sbjct: 23 PVLQILAIKKINSNADAE------RYRILISDGKYFNSYAMLASQLNEMQHKGQLDEFTI 76
Query: 61 VRLTKFTCNVI----QNRMIVIVMDLDVI---IDKCDPIGKPVPAQRPSSNEQ 106
V+L K+ +++ + ++I+ +L V+ + + IG+PV + + ++
Sbjct: 77 VQLDKYVTSMVGKDGAGKRVLIISELTVLNAGAEVKEKIGEPVTYENAAKQDK 129
>gi|302759481|ref|XP_002963163.1| hypothetical protein SELMODRAFT_141493 [Selaginella moellendorffii]
gi|300168431|gb|EFJ35034.1| hypothetical protein SELMODRAFT_141493 [Selaginella moellendorffii]
Length = 566
Score = 264 bits (674), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 160/467 (34%), Positives = 254/467 (54%), Gaps = 31/467 (6%)
Query: 215 VPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCF 274
V R+ P+ +L PY G WTIK RVT+KG LR Y N RG+G VF+ +L D DG +I+ T F
Sbjct: 112 VSRRVYPLVSLTPYQGSWTIKVRVTSKGPLRTYRNARGEGSVFNVELTDEDGTQIQATMF 171
Query: 275 NAVADQFYHQVEAGK-------IYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE 327
A++FY E GK +Y VS G+L+ A + F+ + ND E+ L+ +S V+ E
Sbjct: 172 KEAAEKFYPMFELGKATSFLYQVYYVSNGNLRMANRRFSAVKNDYEMTLNASSGVEEVTE 231
Query: 328 DDAS---IPRQQFHFRPINDVEGMENN-SVVDLIGVVSYISPTASLMRK-NGTETQKRTL 382
D IP +++F I D+ N + D IG+V +S T S+ RK + TE KR +
Sbjct: 232 PDGKPGVIPLVKYNFVKIEDLAAYVNKRELFDAIGIVQSVSSTMSVRRKVDNTEFAKREI 291
Query: 383 HLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKV-VGTISTT 441
L D S ++V ++LW + +DG +L M P++ +++ R +DF V + T +
Sbjct: 292 VLVDQSQKTVAVSLWSSLAVEDGAKLLEMLPDA--PVVVIRSVRANDFQAGVSLSTSPNS 349
Query: 442 QLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRA----DIRKTVSQIKDEGLGT 497
++I PD PEA L+ W+++ GK+ S+ LS RA D R +S I +G
Sbjct: 350 MVWINPDIPEARELRSWYDESGKDATLTSVGA-GLS-QRAGPTNDNRADISDITAPSVG- 406
Query: 498 KEKPDWITVSATIVYIKCD-NFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVEC 556
+ K + TV A I YIK D YTAC CN+KV + W C+ C +
Sbjct: 407 EGKAAYFTVRACISYIKPDQTMWYTACST------CNRKVSEDSSRFW-CEACQRHFDTA 459
Query: 557 DYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFT 616
RYI+ ++ DH+G WV+ F + AE+I+G+SA +L ++K D + ++ + ++
Sbjct: 460 SRRYIMLAKLTDHSGDAWVSFFNDQAEQILGVSADELATIKSQDDDQRQYSSQLSKVVWS 519
Query: 617 KYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKS 663
Y+F++ V + + E+R + T+ +++SE+R +L M KL+S
Sbjct: 520 SYVFRVSVAQTEYLGEKRQRITIRAVNDTDWASESRLLLAKM-KLES 565
>gi|330930966|ref|XP_003303215.1| hypothetical protein PTT_15345 [Pyrenophora teres f. teres 0-1]
gi|311320921|gb|EFQ88698.1| hypothetical protein PTT_15345 [Pyrenophora teres f. teres 0-1]
Length = 587
Score = 264 bits (674), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 159/492 (32%), Positives = 261/492 (53%), Gaps = 27/492 (5%)
Query: 185 YASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGEL 244
Y S A P P+ +N G + PI +L+PY KWTI+AR TAK ++
Sbjct: 114 YGSKPAPAPAQAQRSLPTHQSNPGTASHP----NLYPIESLSPYAHKWTIRARCTAKSDM 169
Query: 245 RHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVS---RGSLKPA 301
+ + N +G GK+F +LLD D GEIR T F VAD+ Y E G +Y +S R +L A
Sbjct: 170 KEWTNAKGAGKLFSVNLLD-DTGEIRATAFTEVADKLYPIFEVGTVYYISAPCRVTL--A 226
Query: 302 QKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVS 361
+K F++L ND E+ + + V+ ED + P+ +F+F I D+ +E ++ +D IGV+
Sbjct: 227 KKQFSNLPNDYELQFERDTEVEKA-EDQENKPQIRFNFTKIGDLSSVEKDTTIDTIGVLK 285
Query: 362 YISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPIL 420
++ ++ K + KR L L D S SV LT+WG + D+ + I+
Sbjct: 286 EVADVTTITSKTTNKDFSKRELTLADDSQTSVRLTIWG--------KTAESFDAPLESII 337
Query: 421 AVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKN-TQSVSISRDSLSVG 479
A K +VSDF G+ + +S+ + ++PD +AHRL+ WF+ G+N T S + S + G
Sbjct: 338 AFKGVKVSDFGGRSLSLLSSGSMMVDPDIDDAHRLRGWFDAVGQNATFSTHQNMASAAGG 397
Query: 480 RADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNN 539
+ K +S I +E ++ P ++++ A+++Y+K Y AC + CNKKV+ +
Sbjct: 398 SKNDAKIISVIMEEEAYLQDTPTYMSLRASVLYVKNTTVAYPAC----STQGCNKKVIED 453
Query: 540 GDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYV 599
G W C++C S E YRY+L + DHTG W++ F E EI+GMSA + LK
Sbjct: 454 NPGNWWCEKCQASFPEPQYRYVLSVNVGDHTGTLWLSCFDEAGAEIVGMSANEAMKLKMD 513
Query: 600 DQND--EKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDL 657
D+ + F ++ AT + F+++ K ET+ D+ + + V+ + NY+ E + L
Sbjct: 514 DEENGTTNFITAMQEATCQTFNFRVRAKMETYQDQPKPRYQVLSLHKLNYAQEANKLAQL 573
Query: 658 MDKLKSGDSTSF 669
+ + + + F
Sbjct: 574 IKQYDMNEDSLF 585
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 8/95 (8%)
Query: 25 QRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNRMIVIVMDLDV 84
QRFR+VLSD Q M+AT N++V SG L+ GS+VRL K+ ++ + I+I+MDL+
Sbjct: 46 QRFRVVLSDVRNFIQTMIATSANDIVMSGQLKKGSIVRLLKYNPQRVKEKNILIIMDLEP 105
Query: 85 IIDK------CDPIGKPVPAQR--PSSNEQPGSVT 111
P P AQR P+ PG+ +
Sbjct: 106 AAISGNNFYGSKPAPAPAQAQRSLPTHQSNPGTAS 140
>gi|378731776|gb|EHY58235.1| replication factor A1 [Exophiala dermatitidis NIH/UT8656]
Length = 608
Score = 263 bits (672), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 149/452 (32%), Positives = 255/452 (56%), Gaps = 22/452 (4%)
Query: 213 SEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVT 272
S + I PI A++PY KWTIKAR T+K E++ ++N+ G+GK+F +LLD + GEIR T
Sbjct: 167 SSAHANIYPIEAISPYSNKWTIKARCTSKSEIKTWHNRNGEGKLFSVNLLD-ESGEIRAT 225
Query: 273 CFNAVADQFYHQVEAGKIYLVSRG-SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDAS 331
FN DQ Y + G++Y +S + A+K F++L ND E+ + ++V+ E D
Sbjct: 226 GFNDQCDQLYDVFQEGQVYYISSPCRVTFAKKQFSNLANDYELHFERDTVVEKAEEQDG- 284
Query: 332 IPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGR 390
+P+ +++F I D++ +E ++ +D+I ++ + K G +KR L L D +G
Sbjct: 285 VPQVRYNFTNIADLQSVEKDTTIDIIAILKDVGEVGQATSKTTGKPYEKRELTLVDNTGY 344
Query: 391 SVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFP 450
SV +T+WG + D ++ K +VSDF G+ + +S+ + PD P
Sbjct: 345 SVRMTIWG--------KTAASLDVQPGSVVVFKGVKVSDFGGRSLSLLSSGSMTANPDMP 396
Query: 451 EAHRLKEWFE---KEGKNTQSVSISRDSLSVG-RADIRKTVSQIKDEGLGTKEKPDWITV 506
EAH+LK W+E + G + ++ VG R+D KT+SQ+K+E LG EKPD+ ++
Sbjct: 397 EAHKLKGWWESHDRPGNFSTHENVQGAVSGVGSRSDPFKTISQVKEEQLGMSEKPDFFSI 456
Query: 507 SATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQI 566
AT+ YIK + F Y AC CN+KV+ G+W C++CD + + +YRYI+ +
Sbjct: 457 KATVHYIKQEPFAYPACL----SEGCNRKVVEIDPGQWRCEKCDTTHPKPEYRYIISANV 512
Query: 567 QDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKE 626
DHTG WV F + ++G +A +L ++K D++ ++ E+ A + + +K K +
Sbjct: 513 SDHTGQLWVNCFDDTGRLLLGRTADELMAIK--DEDQKQVEEIFSEANYKTWNWKCKARL 570
Query: 627 ETFSDEQRVKSTVVKAERYNYSSETRFILDLM 658
+ F ++QRV+ V A ++ +E+ ++ L+
Sbjct: 571 DNFQEQQRVRYQVTSAAPLDFVTESNKLITLI 602
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PV+Q + +K + + Q Q+R R++ SD Q MLA +N LV +L+ G +V
Sbjct: 31 PVVQCVQIKPIAA-----QPGGQERHRVIFSDTKNYIQTMLAVHQNSLVDQKILRRGVLV 85
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIID--KCDPIGKP 95
+L ++ N ++ + I+IV D+ V+ D + D +G P
Sbjct: 86 QLVGYSANRVKGKRILIVTDIKVLEDYGEHDKLGDP 121
>gi|149248590|ref|XP_001528682.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448636|gb|EDK43024.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 658
Score = 263 bits (671), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 185/689 (26%), Positives = 337/689 (48%), Gaps = 90/689 (13%)
Query: 3 VLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVR 62
V Q+ ++K V + Q+++R++LSDG S G++ + + + + ++
Sbjct: 28 VFQITNMKAV------DTVNNQRKYRILLSDGVYSTHGLINENCTAYLENNNVSRYATIQ 81
Query: 63 LTKFTCNVIQNRMIVIVMDLDVIIDKCDP-IGKPVP-----AQRPSSNEQPGSVTGNPQS 116
+ +F+ + + + D +++ + + + KP+ A+ P +E ++T
Sbjct: 82 VNRFST-LTSTKHFFFIEDFELLNNAGEKLVEKPISVDDYFAEHP--DEASAAITAK--- 135
Query: 117 NATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSN 176
G SL + S PG A P S P + + Q+ +
Sbjct: 136 --RGDSLDRNE----SPAPGGAGATPPVAQ--STYPGQQQQQQQQQQQQQAVAQNPQYPK 187
Query: 177 PRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKA 236
PR GL + RI PI L+PY WTI+A
Sbjct: 188 PR---------------------------GVGLGAGDKNGPRISPIETLSPYQNNWTIRA 220
Query: 237 RVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG 296
RV+ KGELR ++N +G+GKVF + LD + EI+ + FN A++ Y+ +E GK+Y +S+
Sbjct: 221 RVSYKGELRTWSNAKGEGKVFSVNFLD-ESDEIKASAFNETAEKAYNILEEGKVYYISKA 279
Query: 297 SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDL 356
+ A+K FN+L + E+ L+ S + C+ D++++P+ F+F ++ ++ ++ N++VD+
Sbjct: 280 KVAAARKKFNNLTHPYELQLEKDSEITECF-DESNVPKLNFNFVKLDQIQNLDANAIVDV 338
Query: 357 IGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSG 415
IG + ++P + K+ G +R + + D SG +V++ LW D + G
Sbjct: 339 IGALKVVNPPFQITAKSTGKAFDRRDITIVDESGFAVDIGLWNQTAAD------FAVEEG 392
Query: 416 VFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDS 475
++A K +VSDFNG+ + + L P PE++ LK W++ G S+ +S
Sbjct: 393 --SVIAFKGCKVSDFNGRTLSLTQSGSLIANPGIPESYHLKGWYDNIGVKENYKSLKTES 450
Query: 476 ------LSV-GRADIRKTVSQIKDEGLGTK---EKPDWITVSATIVYIKCDNFCYTACPI 525
LSV R RK +SQ++DE +G + EK ++ + A++ Y K +NF Y ACP
Sbjct: 451 GAGSNNLSVMERFAQRKMISQVEDENIGGQNGGEKLEYFSTKASLSYAKPENFAYPACPN 510
Query: 526 MI---GD----------RPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
++ GD PCNKK++ D +W C+RC+ +RYIL I D +G
Sbjct: 511 ILSQSGDASLSGAGARQNPCNKKLVQY-DDKWRCERCNMEFDRPTWRYILNCGIMDASGQ 569
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
WVT F E A++++GM A +L L +QN EV+ F ++ F+++ K++TF+D+
Sbjct: 570 IWVTLFDEQAKKLLGMEANELVELSQENQN--AAAEVIHRNYFREFNFRIRAKQDTFNDQ 627
Query: 633 QRVKSTVVKAERYNYSSETRFILDLMDKL 661
+++ + +Y++E ++ +D +
Sbjct: 628 LKIRYQCMGLTDIDYTAECDYLCKEIDSV 656
>gi|50553160|ref|XP_503990.1| YALI0E15642p [Yarrowia lipolytica]
gi|49649859|emb|CAG79583.1| YALI0E15642p [Yarrowia lipolytica CLIB122]
Length = 589
Score = 261 bits (668), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 145/450 (32%), Positives = 248/450 (55%), Gaps = 23/450 (5%)
Query: 216 PSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFN 275
P+ ++PI L+PY KW IK RVT+K + + ++N +G+G++F+ +D + GEIR T FN
Sbjct: 156 PATVMPIERLSPYQNKWAIKVRVTSKADKKKFSNTKGEGQLFNVTFID-ETGEIRATGFN 214
Query: 276 AVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLE-IFLDMTSMVQLCYEDDASIPR 334
D+FY +E G++Y V++ + A K F++++ND E +F T ++Q + A+IP
Sbjct: 215 QEVDKFYPMLEEGQVYYVTQCRVSMANKKFSNVNNDYELVFGRDTVIIQADEAEAAAIPT 274
Query: 335 QQFHFRPINDVEGMENNSVVDLIGVVSYISPTAS-LMRKNGTETQKRTLHLRDMSGRSVE 393
+ F ++ ++ +E + VD++GVV + P + + G ++R L L D SG +
Sbjct: 275 ANYSFVTLDKLQDVEVGNNVDVLGVVQNVGPLEDGVAKATGNPYKRRNLMLGDKSGFATR 334
Query: 394 LTLWGNFCNDDGLRLQHMCDSGVFP---ILAVKAGRVSDFNGKVVGTISTTQLFIEPDFP 450
LT +G D G P I+A+K RV DFNG+ + T ++ + +EP
Sbjct: 335 LTFFGEKATS--------FDEGTVPVGTIIAIKGARVGDFNGRNLSTSHSSTIAVEPAID 386
Query: 451 EAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATI 510
E + LK W+ EGK T S + + + T + G EKPD+ T+ A +
Sbjct: 387 ETYALKGWYASEGKQT---SFKQLQTTTTNKPVAATPIDVATSSYGQSEKPDYYTLQAWV 443
Query: 511 VYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHT 570
V+++ NF Y AC CNKKV+ +GD W C++C++++ + YRYIL + D T
Sbjct: 444 VHVRTGNFAYPACQT----PDCNKKVVEHGD-EWRCEKCEKNMDKPLYRYILSINVGDAT 498
Query: 571 GLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFS 630
G W+TAF E AE IMGM+A L ++ Q D++F + V+ T +Y + + K+E ++
Sbjct: 499 GSMWLTAFNEPAEVIMGMTADQLTEIQ-TSQGDDEFEQAVQKVTGKQYTLRCRSKQEFYN 557
Query: 631 DEQRVKSTVVKAERYNYSSETRFILDLMDK 660
+E + + V+ A+ +Y + ++ +D+
Sbjct: 558 EESKARHQVLTAQALDYLKDIDELIKDLDQ 587
>gi|393216703|gb|EJD02193.1| replication factor-a protein [Fomitiporia mediterranea MF3/22]
Length = 605
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 142/449 (31%), Positives = 240/449 (53%), Gaps = 25/449 (5%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
+ PI L+PY KWTI+ARVT K ++RHY+ +G+GK+F L+D D GEIR T FN
Sbjct: 174 VFPIEGLSPYQNKWTIRARVTVKSDVRHYSTPKGEGKIFTVTLMD-DSGEIRATGFNHQV 232
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
DQFY ++E GK+Y VS+ + A+K F+++ N+ E+ L + + C D A+ P+ +H
Sbjct: 233 DQFYDKLEEGKVYYVSKARVNLAKKKFSNVQNEYELMLGTETEISEC-ADQAAAPQITYH 291
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVELTLW 397
F ++++ E ++ D+IG+V +S ++ K G +KR L L D+S +V +TLW
Sbjct: 292 FVKLSELGNQEKDTTCDVIGIVKDVSDVTEIVAKATGRTIKKRELTLIDLSEFAVRMTLW 351
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKE 457
G + + +LA K RV DF G+ + + T + + PD EAH L+
Sbjct: 352 G--------KQAESYTAEEHAVLAFKGARVGDFGGRSLSMSNATHMSVNPDINEAHVLRG 403
Query: 458 WFEKEG-----KNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVY 512
WF+ K+ S S R + KT+ +++ + + + TI++
Sbjct: 404 WFDSLNSPPAFKSHSGGSSSAGGFGDIRREAMKTLLEVRALQENVPDGGENFSCRGTILH 463
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
IK DN Y ACP CNKKV+ +G W C++CD++ E +YR+++ + DHTG
Sbjct: 464 IKADNLFYPACPT------CNKKVIEGSEG-WRCEKCDRAYTEPEYRFMMSMSVADHTGQ 516
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
W+ F + + G +A +L+ LK ++++ + + AT Y F + K++T++++
Sbjct: 517 VWLNGFNDVGLVVFGKTASELHELK--ERDESAYTAAIARATCNTYNFNCRAKQDTYNEQ 574
Query: 633 QRVKSTVVKAERYNYSSETRFILDLMDKL 661
RV+ + K +Y E + D + K+
Sbjct: 575 SRVRFGIQKIMPLDYKLEAGLLRDRLKKM 603
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 62/108 (57%), Gaps = 7/108 (6%)
Query: 3 VLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVR 62
VLQ++ LK + + ++ RFR+V+SDG Q MLATQ +V G + SVV+
Sbjct: 30 VLQLLSLKKIGAAREGAAP---DRFRLVVSDGVHYTQAMLATQLTGMVDEGEIAKYSVVK 86
Query: 63 LTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKP----VPAQRPSSNEQ 106
+ K TCN +QN+ ++I++ L + + + IG P VP Q SS+ +
Sbjct: 87 VEKLTCNNVQNKKLLILLALTPVGNPGEKIGDPGSLEVPGQNASSSTE 134
>gi|112983132|ref|NP_001036938.1| replication protein A1 [Bombyx mori]
gi|55700848|dbj|BAD69789.1| Replication protein A large subunit [Bombyx mori]
Length = 598
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 146/430 (33%), Positives = 238/430 (55%), Gaps = 18/430 (4%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PI++L+PY KW I+ARV +K +R ++N +G+ K+F D + GEIR T F D
Sbjct: 165 PISSLSPYQNKWVIRARVMSKTPIRTWSNAKGERKLFSMYPCD-ETGEIRATAFKNECDT 223
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
FY ++ K+Y +SR ++K A K F L ND E+ ++V D++++P Q+ F
Sbjct: 224 FYDMIQVDKVYYISRCAIKTANKKFTTLKNDYEMTFTAETVVGEYVGDESAVPTVQYDFL 283
Query: 341 PINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWGN 399
PI+++ E +++DLI V S L K+ G +KR + L D SG +V LTLWGN
Sbjct: 284 PISEIANKETETLIDLIDVCKSASDVQELTAKSTGKLLKKREVMLVDASGGAVTLTLWGN 343
Query: 400 FCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNG-KVVGTISTTQLFIEPDFPEAHRLKEW 458
+ PILAVK R+++FNG K + +S+T L + PD PEAH+L+ W
Sbjct: 344 EA--------EKFEGNTNPILAVKGARLTEFNGSKSLSCLSSTMLRLNPDVPEAHKLRGW 395
Query: 459 FEKEGKNTQSVSISRDSLS-VGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDN 517
++ G + V+IS S + G ++ + S+ + LGT EK D+ ++ + + +N
Sbjct: 396 YDNGGADADIVNISAKSGNFTGGSNEWISFSEAESRQLGTGEKGDYYSLLGVLTFTFSEN 455
Query: 518 FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTA 577
Y ACP CNKK+++ +G + C++C++ +R +L + D TG VT
Sbjct: 456 AVYKACP----QEQCNKKLVDQENGLFRCEKCNREYPNYKHRILLAANVSDPTGDQRVTL 511
Query: 578 FQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKS 637
F E AE ++G SA+++ L D+N+ + ++ F ++FK + K E F+DE R+K+
Sbjct: 512 FNEAAETMLGKSAEEIARLSEYDKNE--YNKIFDEVKFKTFVFKFRTKMENFNDESRLKT 569
Query: 638 TVVKAERYNY 647
TVV + +Y
Sbjct: 570 TVVNVQPVDY 579
>gi|403416914|emb|CCM03614.1| predicted protein [Fibroporia radiculosa]
Length = 609
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 160/498 (32%), Positives = 262/498 (52%), Gaps = 44/498 (8%)
Query: 179 PEFSRPYASN---YARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIK 235
P+ + P AS AR P A Q P R G++ V PI +L+PY W IK
Sbjct: 135 PQKTAPAASTSTMTARPPPAALAQQPPRQQTRN--GRNTV----YPIESLSPYQNHWMIK 188
Query: 236 ARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSR 295
ARV+ K +++ ++NQRG+GK+F L+D + GEI+ T FN D+ Y + + GK+Y VS+
Sbjct: 189 ARVSQKSDVKTWSNQRGEGKLFSVTLMD-ETGEIKGTGFNNAVDELYDKFQEGKVYFVSK 247
Query: 296 GSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVD 355
+ A+K F+++ N+ E+ + + V+ C+ D ++P +++F I + + +SV D
Sbjct: 248 ARVNLAKKKFSNVQNEYELTFERNTEVEECH-DVTNVPTVRYNFVDIGKLSEITKDSVCD 306
Query: 356 LIGVVSYISPTASLMRKNGTET-QKRTLHLRDMSGRSVELTLWG----NFCNDDGLRLQH 410
+IGVV + + K +T KR L L D SG SV LTLWG F +D
Sbjct: 307 VIGVVKDVGQLGEITSKTTNKTVSKRDLTLVDRSGFSVRLTLWGKQAETFVAEDQ----- 361
Query: 411 MCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEG--KNTQS 468
P++A K +V DF G+ + S++ + + PD P+AH L+ WF+ G +N Q+
Sbjct: 362 -------PVIAFKGVKVGDFGGRTLSMFSSSTMQVNPDIPDAHALRGWFDAAGVDQNYQA 414
Query: 469 -----VSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTAC 523
RA+I V+ +K+ +G +KPD+ ATI+++K +N Y AC
Sbjct: 415 QSSSGGGGGGSYGQFERAEIL-PVNTVKEREMGMSDKPDFFLCRATIMHLKTENIAYPAC 473
Query: 524 PIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAE 583
CNKKV+ DG W C+RCD+S + YRYI+ D++G W+ F + +
Sbjct: 474 HT----DGCNKKVIEGHDG-WRCERCDRSWEKPQYRYIVSLAAADYSGQAWLQGFNDAGQ 528
Query: 584 EIM-GMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKA 642
I SA ++ +K D++D F ++V A Y F + K+ETF+D R++ ++ +
Sbjct: 529 VIFDSKSADEVVEVK--DRDDVAFNKIVEQAMGKTYNFVCRAKQETFNDSTRIRYSIQRI 586
Query: 643 ERYNYSSETRFILDLMDK 660
+Y E ++ +L+ +
Sbjct: 587 LPVSYKEEGAYLANLLRR 604
Score = 73.6 bits (179), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 26 RFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNRMIVIVMDLDVI 85
R+R+++SDG Q MLATQ N LV + S+ + KFTCN++Q++ ++I++ L ++
Sbjct: 50 RYRVIISDGEHFLQAMLATQLNHLVEDEKITKHSIATIEKFTCNLVQDKRLLIILSLQIV 109
Query: 86 IDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVS 122
IG P P Q PS P + PQ A S
Sbjct: 110 AKDSSKIGNPTPIQSPSG---PNAAGALPQKTAPAAS 143
>gi|328857111|gb|EGG06229.1| hypothetical protein MELLADRAFT_74880 [Melampsora larici-populina
98AG31]
Length = 525
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 152/482 (31%), Positives = 253/482 (52%), Gaps = 35/482 (7%)
Query: 192 TPQAPYMQS----PSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHY 247
TP P + + PS+ A+ G S +IPI L+PY KW IKARV K +++H+
Sbjct: 62 TPSKPMVSNSNAKPSINASNRQGGPS-----VIPIMGLSPYSNKWRIKARVVQKSDIKHW 116
Query: 248 NNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNH 307
+N RG+GK+F D + G+I+ T FN DQ Y ++ G ++ VSR + A+K FN
Sbjct: 117 HNARGEGKLFSVTFSD-ESGQIKATGFNDTVDQLYERLVVGDVFFVSRAKVSLAKKQFNT 175
Query: 308 LHNDLEIFLDMTSMVQLCYEDDASIPRQQFH-FRPINDVEGMENNSVVDLIGVVSYISPT 366
L +D EI + + V C D IP Q + + + + +E + V D++ V+
Sbjct: 176 LPHDYEIMFENQTEVDECV-DAGDIPLIQLNKYMQLGQLGEVEKDHVCDIVAVLKDAGEL 234
Query: 367 ASLMRKNGT-ETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAG 425
++ K E KR + L D S S+ +TLWG D ++ V ILA +
Sbjct: 235 GQIVTKQTQREMSKRDITLVDQSAFSIRMTLWGKQAED--------FNAPVESILAFQGV 286
Query: 426 RVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGR----- 480
RV DF G+ + +S++ + I P+ PEA L+ W++ EG T ++ + SVG
Sbjct: 287 RVGDFQGRNLSMVSSSIMAINPEIPEAFDLRGWYDTEGA-TVAIQSHSGAGSVGMNNQAP 345
Query: 481 --ADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMN 538
D KT+ Q+K E LG EK D+ + AT+++IK + F Y ACP CNKK++
Sbjct: 346 ITEDSLKTIVQVKQEELGQSEKGDYFNLRATVLFIKNETFSYPACPT----ERCNKKMVQ 401
Query: 539 NGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKY 598
+GD W C++CD++ D+RY++Q D++G+ +++ F E + ++G +A +L L+
Sbjct: 402 DGDDEWKCEKCDKTYPAPDHRYLIQLTASDYSGVMYLSGFNEVGQILLGKTANELIQLQ- 460
Query: 599 VDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLM 658
+++E F + +AT+ + F + K E + D R K ++++ N+ + DL+
Sbjct: 461 -QEDEENFKRAILDATYRTWDFVCRAKREVYQDTPRTKYSIIRLGEVNWKEAGLGLADLI 519
Query: 659 DK 660
K
Sbjct: 520 TK 521
>gi|397580873|gb|EJK51733.1| hypothetical protein THAOC_29071 [Thalassiosira oceanica]
Length = 438
Score = 259 bits (663), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 146/448 (32%), Positives = 243/448 (54%), Gaps = 31/448 (6%)
Query: 228 YMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEA 287
Y +W I+A+V +K +R ++N +G+G++F ++LDS G +++ T F D+FY+ +E
Sbjct: 2 YSNRWVIRAKVVSKSGVRTWSNAKGEGQLFSMEILDSAGTDVKCTFFKEAVDKFYNFIEE 61
Query: 288 GKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEG 347
++Y S G LK A +N + EI D S ++L I R + F + DVE
Sbjct: 62 DRVYTFSGGRLKVANMQYNKCKSQFEITFDQNSTIELDQGGGDDI-RASYDFVKVADVER 120
Query: 348 MENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGL 406
+ N +D++GVV + A+++ +K+G E K L + D SG + LT+WG+ N
Sbjct: 121 SQPNDYIDILGVVKAVGEPATIVSKKSGKELTKCELTVEDDSGAEITLTMWGDTANKARE 180
Query: 407 RLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNT 466
R G P++A K RVSD+ G+ T+S + + P+ P+A L +W+ G +
Sbjct: 181 RF------GGTPVVAFKRARVSDYGGR---TLSGSGFSVNPNIPQAAALSQWWAANGGKS 231
Query: 467 QSVSISRDSLSVGRA----DIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDN----- 517
S S+S + R ++RK V+ IK + LG EKPD+++ ATI ++K D
Sbjct: 232 ASRSLSSGGMGGNRGPDPFEMRKAVNSIKSDQLGYNEKPDYLSFKATITFLKKDKQGDEG 291
Query: 518 FCYTACPIMIGDRPCNK--KVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWV 575
YTAC G PC K DG WHCD+C Q++ +C R+I + D T +W+
Sbjct: 292 AWYTACA--NGGDPCKNMYKATQTSDGNWHCDKCQQTLPDCVRRFIFSGTVADDTSTSWI 349
Query: 576 TAFQECAEEIM-GMSAKDLYSLKYVDQND----EKFGEVVRNATFTKYLFKLKVKEETFS 630
+ F + AEE++ G +A DLY + D + + AT+++++FK KV++E
Sbjct: 350 SVFNQQAEELLGGATADDLYD--KITSGDGGGRDVYDSAFARATYSEWIFKCKVRQEMVG 407
Query: 631 DEQRVKSTVVKAERYNYSSETRFILDLM 658
DEQR+K+++V A +Y++E+R +L +
Sbjct: 408 DEQRIKTSLVAAHPLDYAAESRSLLQAL 435
>gi|426196046|gb|EKV45975.1| hypothetical protein AGABI2DRAFT_193885 [Agaricus bisporus var.
bisporus H97]
Length = 591
Score = 259 bits (661), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 144/450 (32%), Positives = 248/450 (55%), Gaps = 33/450 (7%)
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
PI L+PY WTIKARVT K ++++++N RG+GK+F L+D D GEI+ T FN+V D
Sbjct: 158 FPIENLSPYQNNWTIKARVTQKSDIKNWSNSRGEGKLFSVTLMD-DSGEIKATAFNSVVD 216
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
+ + ++E K+Y +S+ + A+K F+++ ND E+ L+ ++ + C+E +P ++ F
Sbjct: 217 ELFPRLEDSKVYYISKARVNFAKKKFSNVTNDYELTLERSTQITECHE-TTGLPEMRYTF 275
Query: 340 RPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWG 398
+ +E + +++ D+IGV+ IS + + R QKR L L D SG S++LTLWG
Sbjct: 276 VGLEKLENLNKDAICDVIGVLKDISAVSEITARTTNRSFQKRELTLVDKSGCSIQLTLWG 335
Query: 399 ----NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
+F + G I A K +V DF G + T +T + ++P + +
Sbjct: 336 KQAESFTGEPG------------SIGAFKGVKVGDFGGVSLSTTPSTHIQLDPHIQDCYT 383
Query: 455 LKEWFEKEGKNT--QSVSI----SRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSA 508
L+ W++ +G + QS ++ ++ RA +R ++++IK+ +G +K D
Sbjct: 384 LRGWWDSQGSDMSFQSKTVIGGGGGLGIAFNRAQVR-SLNEIKEAEVGMGDKADTFCCQG 442
Query: 509 TIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQD 568
TIV+I+ N Y ACP CNKK+ +GD W CD+C + +YRYIL + D
Sbjct: 443 TIVHIRDQNLLYPACP----GNNCNKKMSMSGD-TWVCDKCGTNAETPEYRYILSMAVAD 497
Query: 569 HTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEET 628
+G W+ F E A + GMS +LY LK D+ +K+ V+ A Y F + K+++
Sbjct: 498 WSGQAWLQGFNEAAVIVFGMSGNELYDLKMRDE--DKYNAVIHKAHCQTYNFACRAKKDS 555
Query: 629 FSDEQRVKSTVVKAERYNYSSETRFILDLM 658
+ D R++ + + E+ +Y +E +++ DL+
Sbjct: 556 YEDRVRIRYGISRIEKVDYHAEAQYLRDLL 585
Score = 48.1 bits (113), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 38/60 (63%)
Query: 26 RFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNRMIVIVMDLDVI 85
R+R+++SDG Q MLATQ N LV + ++ SV + + + N +Q + +VIV+ L ++
Sbjct: 48 RYRLIISDGKYYIQAMLATQCNSLVETDQIKKFSVAAIERASSNTVQGKRLVIVLSLRIL 107
>gi|409079138|gb|EKM79500.1| hypothetical protein AGABI1DRAFT_114047 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 591
Score = 259 bits (661), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 144/450 (32%), Positives = 248/450 (55%), Gaps = 33/450 (7%)
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
PI L+PY WTIKARVT K ++++++N RG+GK+F L+D D GEI+ T FN+V D
Sbjct: 158 FPIENLSPYQNNWTIKARVTQKSDIKNWSNSRGEGKLFSVTLMD-DSGEIKATAFNSVVD 216
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
+ + ++E K+Y +S+ + A+K F+++ ND E+ L+ ++ + C+E +P ++ F
Sbjct: 217 ELFPRLEDSKVYYISKARVNFAKKKFSNVTNDYELTLERSTQITECHE-TTGLPEMRYTF 275
Query: 340 RPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWG 398
+ +E + +++ D+IGV+ IS + + R QKR L L D SG S++LTLWG
Sbjct: 276 VGLEKLENLNKDAICDVIGVLKDISAVSEITARTTNRSFQKRELTLVDKSGCSIQLTLWG 335
Query: 399 ----NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
+F + G I A K +V DF G + T +T + ++P + +
Sbjct: 336 KQAESFTGEPG------------SIGAFKGVKVGDFGGVSLSTTPSTHIQLDPHIQDCYT 383
Query: 455 LKEWFEKEGKNT--QSVSI----SRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSA 508
L+ W++ +G + QS ++ ++ RA +R ++++IK+ +G +K D
Sbjct: 384 LRGWWDSQGSDMSFQSKTVIGGGGGLGIAFNRAQVR-SLNEIKEAEVGMGDKADTFCCQG 442
Query: 509 TIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQD 568
TIV+I+ N Y ACP CNKK+ +GD W CD+C + +YRYIL + D
Sbjct: 443 TIVHIRDQNLLYPACP----GNNCNKKMSMSGD-TWVCDKCGTNAETPEYRYILSMAVAD 497
Query: 569 HTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEET 628
+G W+ F E A + GMS +LY LK D+ +K+ V+ A Y F + K+++
Sbjct: 498 WSGQAWLQGFNEAAVIVFGMSGNELYDLKMRDE--DKYNAVIHKAHCQTYNFACRAKKDS 555
Query: 629 FSDEQRVKSTVVKAERYNYSSETRFILDLM 658
+ D R++ + + E+ +Y +E +++ DL+
Sbjct: 556 YEDRVRIRYGISRIEKVDYHAEAQYLRDLL 585
Score = 48.1 bits (113), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 38/60 (63%)
Query: 26 RFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNRMIVIVMDLDVI 85
R+R+++SDG Q MLATQ N LV + ++ SV + + + N +Q + +VIV+ L ++
Sbjct: 48 RYRLIISDGKYYIQAMLATQCNSLVETDQIKKFSVAAIERASSNTVQGKRLVIVLSLRIL 107
>gi|302498152|ref|XP_003011074.1| hypothetical protein ARB_02596 [Arthroderma benhamiae CBS 112371]
gi|291174622|gb|EFE30434.1| hypothetical protein ARB_02596 [Arthroderma benhamiae CBS 112371]
Length = 475
Score = 258 bits (660), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 145/424 (34%), Positives = 241/424 (56%), Gaps = 23/424 (5%)
Query: 217 SRIIPIAALNPYMG-KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFN 275
+ I I AL+P+ KWTIKAR T K ++ + N G+GK+F +LLD D GEIR T F
Sbjct: 69 ANIFSIEALSPFANNKWTIKARCTHKSNIKTWKNTFGEGKLFSVNLLD-DSGEIRATAFK 127
Query: 276 AVADQFYHQVEAGKIYLVSRG-SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPR 334
D Y E G +Y +S ++K A+K F++++ND E+ D ++V+ ED +P+
Sbjct: 128 DQCDLLYPIFEEGAVYYISSPCTVKMAKKEFSNVNNDYELTFDRDTVVEKA-EDQNDVPQ 186
Query: 335 QQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVE 393
+F+F + +++ ++ + +D++G++ + T+ + K G KR L L D SG SV
Sbjct: 187 IRFNFTSLGNLQSIDKGTTIDVLGILKDVDATSQVTSKTTGKPYDKRELTLVDNSGFSVR 246
Query: 394 LTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAH 453
LT+WGN + D+ ++A K +VSDF G+ + +S+ + ++PD EAH
Sbjct: 247 LTVWGNTATN--------FDTPPESVVAFKGVKVSDFGGRTLSLLSSGTVTVDPDIEEAH 298
Query: 454 RLKEWFEKEGKNTQSVSISRDSLSVGRAD--IRKTVSQIKDEGLGTKEKPDWITVSATIV 511
RLK W++ +GK+ + S + G KT+S+I+DE L + + + ++ AT++
Sbjct: 299 RLKGWYDAQGKSNSFTAYSSGATGGGGGSWPTFKTISEIRDEELPSADSFETFSLKATVI 358
Query: 512 YIKCDNFCYTACPIMIGDRPCNKKVMNNGD-GRWHCDRCDQSVVECDYRYILQFQIQDHT 570
++K DN CY ACP + C K + GD +WHC+RC++S YRYIL DHT
Sbjct: 359 HVK-DNLCYPACP----NEACKNKKVTRGDLDQWHCERCERSYANPKYRYILSLNACDHT 413
Query: 571 GLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFS 630
G W++ F E + I GM+A +L +K +++D E+ + AT+ + FK + K +T+
Sbjct: 414 GQIWLSCFDEAGQMIFGMTADELMKIK--EEDDTAANEITKGATYCTWNFKCRAKLDTYQ 471
Query: 631 DEQR 634
++QR
Sbjct: 472 EQQR 475
>gi|396082253|gb|AFN83863.1| DNA replication factor A protein 1 [Encephalitozoon romaleae
SJ-2008]
Length = 573
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 161/505 (31%), Positives = 275/505 (54%), Gaps = 49/505 (9%)
Query: 160 VGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGK-SEVPSR 218
+ G+ SFS+ S NPR R SN P+ ++ V + ++
Sbjct: 115 ISTGNASFSDNQPSPGNPR----RIEGSNQQHC-------RPTDEGDKKRVRRDADDEGE 163
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDG-GEIRVTCFNAV 277
+ I LNP+ KWTIK RV K ++R + N +G+GKVF+F++ SDG ++++ CF+
Sbjct: 164 FVAINMLNPFYNKWTIKGRVVVKSDIRRFTNHKGEGKVFNFEI--SDGTAQVKIICFSDC 221
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
D F+ VE GK+Y++S+G++K A K ++ D EI LD S V+ C DD S PR F
Sbjct: 222 VDIFFPIVEVGKVYIISKGTVKTANKQYSTNPFDYEIILDKGSEVR-CAADDGS-PRYFF 279
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYI-SPTASLMRKNGTETQKRTLHLRDMSGRSVELTL 396
+F I+D+ ++ D+IGVV + SP+ ++R E KR L D SG SV LTL
Sbjct: 280 NFVKISDLS--LGSTYCDVIGVVKEVYSPSTVMIRSTQNELLKRDAILVDESG-SVRLTL 336
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
WG D + G+ +L +K+ +VS+FNG + T +Q+ + PD PEAH L
Sbjct: 337 WGPKAEID-------IEGGM--VLGLKSIKVSEFNGITISTTGGSQVVVNPDIPEAHELA 387
Query: 457 EWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCD 516
W++ GK+ Q VS+ R + + R+ + ++K+ L + T+ T++++K D
Sbjct: 388 GWYQSIGKDMQ-VSLPR------KEEKRRLIQEVKENELA------YSTIQGTVMFLKED 434
Query: 517 NFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVT 576
YT+C CNKKV G + C+RC+ + +C+YRY++ + D TG WV+
Sbjct: 435 ALWYTSCK----GEGCNKKVAMEESGNYRCERCNMTYEDCNYRYMVSMHLGDFTGQIWVS 490
Query: 577 AFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVK 636
F E A G+SA+++ + +++ + ++R F + LF++K K+++++DE R++
Sbjct: 491 LFDEAASGFFGISAREMKEMS--EESPTELQTLIRRMYFRECLFRIKSKQDSYNDELRMR 548
Query: 637 STVVKAERYNYSSETRFILDLMDKL 661
+ + + E++ +LD+++K+
Sbjct: 549 YSGLNVITLDILKESKRLLDVIEKV 573
>gi|302667076|ref|XP_003025132.1| hypothetical protein TRV_00711 [Trichophyton verrucosum HKI 0517]
gi|291189215|gb|EFE44521.1| hypothetical protein TRV_00711 [Trichophyton verrucosum HKI 0517]
Length = 475
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 144/424 (33%), Positives = 241/424 (56%), Gaps = 23/424 (5%)
Query: 217 SRIIPIAALNPYMG-KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFN 275
+ I I AL+P+ +WTIKAR T K ++ + N G+GK+F +LLD D GEIR T F
Sbjct: 69 ANIFSIEALSPFANNRWTIKARCTHKSNIKTWKNTFGEGKLFSVNLLD-DSGEIRATAFK 127
Query: 276 AVADQFYHQVEAGKIYLVSRG-SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPR 334
D Y E G +Y +S ++K A+K F++++ND E+ D ++V+ ED +P+
Sbjct: 128 DQCDLLYPIFEEGAVYYISSPCTVKMAKKEFSNVNNDYELTFDRDTVVEKA-EDQNDVPQ 186
Query: 335 QQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVE 393
+F+F + +++ ++ + +D++G++ + T+ + K G KR L L D SG SV
Sbjct: 187 IRFNFTSLGNLQSIDKGTTIDVLGILKDVDATSQVTSKTTGKPYDKRELTLVDNSGFSVR 246
Query: 394 LTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAH 453
LT+WGN + D+ ++A K +VSDF G+ + +S+ + ++PD EAH
Sbjct: 247 LTVWGNTATN--------FDTPPESVVAFKGVKVSDFGGRTLSLLSSGTVTVDPDIEEAH 298
Query: 454 RLKEWFEKEGKNTQSVSISRDSLSVGRAD--IRKTVSQIKDEGLGTKEKPDWITVSATIV 511
RLK W++ +GK+ + S + G KT+S+I+DE L + + + ++ AT++
Sbjct: 299 RLKGWYDAQGKSNSFTAYSSGATGGGSGSWPTFKTISEIRDEELPSADSFEAFSLKATVI 358
Query: 512 YIKCDNFCYTACPIMIGDRPCNKKVMNNGD-GRWHCDRCDQSVVECDYRYILQFQIQDHT 570
++K DN CY ACP + C K + GD +WHC+RC++S YRYIL DHT
Sbjct: 359 HVK-DNLCYPACP----NEACKNKKVTRGDLDQWHCERCERSYANPKYRYILSLNACDHT 413
Query: 571 GLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFS 630
G W++ F E + I GM+A +L +K +++D E+ + AT+ + FK + K +T+
Sbjct: 414 GQIWLSCFDEAGQMIFGMTADELMKIK--EEDDAAANEITKGATYCTWNFKCRAKLDTYQ 471
Query: 631 DEQR 634
++QR
Sbjct: 472 EQQR 475
>gi|298710029|emb|CBJ31747.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 419
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 145/429 (33%), Positives = 230/429 (53%), Gaps = 24/429 (5%)
Query: 244 LRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQK 303
+R +NN RG G +F DLLD DG EI+ T F AD+++ ++ G++Y + G +K A K
Sbjct: 1 MRQWNNARGSGTLFSVDLLDEDGSEIKGTFFKQDADKWFQILQEGQVYAFTGGKVKVANK 60
Query: 304 NFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYI 363
F+ + + E+ D ++ + DD+ I + F +N++E +E N V+D+I VV +
Sbjct: 61 KFSSFNAEYELTFDSSTQIN-PINDDSRIGSATYAFVKLNEMEALEANKVLDVIAVVKSV 119
Query: 364 SPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVK 423
A + + G + KR L L D + + LTLWG+ DG R + P++A K
Sbjct: 120 EDHAQFVSRAGKQLDKRNLILVDDTCTEINLTLWGDMAKADGSRWEGN------PVVAFK 173
Query: 424 AGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSIS------RDSLS 477
++SDF+G+ + +++ + L +PD PE L+ WF+ G + S++ S
Sbjct: 174 GVKLSDFSGRSLNSLNASTLVNDPDVPETADLRAWFDAAGGGSSFKSVTVRNGGGGGSDD 233
Query: 478 VGRADI--RKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNF---CYTACPIMIGDRPC 532
+ DI R T+ I D LG EKPDW V ATI +IK D YTACP C
Sbjct: 234 AAKKDISQRYTLQSITDGNLGNGEKPDWAVVKATISFIKLDGERLPWYTACP----KEGC 289
Query: 533 NKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM-GMSAK 591
NKKV +G W C++C+Q+ EC RY+L QI D+TG WVTAF + E++ +A
Sbjct: 290 NKKVTETMEGAWQCEKCNQTHPECQRRYMLSMQISDNTGKAWVTAFNDQGVELLDNRTAD 349
Query: 592 DLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSET 651
+L+ +K + ND + E+ A F Y+ L+VK + ++DE R + T+ + + +E
Sbjct: 350 ELFQMKE-EGNDAELEELFSEACFKTYMLTLRVKTDMYNDETRSRKTLQRLAPVDVKAEC 408
Query: 652 RFILDLMDK 660
+LD + K
Sbjct: 409 AALLDAIAK 417
>gi|303391020|ref|XP_003073740.1| DNA replication factor A protein 1 [Encephalitozoon intestinalis
ATCC 50506]
gi|303302888|gb|ADM12380.1| DNA replication factor A protein 1 [Encephalitozoon intestinalis
ATCC 50506]
Length = 572
Score = 256 bits (655), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 148/441 (33%), Positives = 254/441 (57%), Gaps = 37/441 (8%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDG-GEIRVTCFNAVADQ 280
I LNP+ KW IK RV KG++R ++NQ+G+GKVF+F++ SDG ++++ CF+ D
Sbjct: 166 INMLNPFHNKWMIKGRVVLKGDIRRFSNQKGEGKVFNFEI--SDGTAQVKIICFSDCVDI 223
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
F+ VE GK+Y VS+G++K A K ++ D EI LD S V+ C DD S PR F+F
Sbjct: 224 FFPIVEVGKVYSVSKGTVKMANKQYSTNPFDYEIILDKNSEVR-CTVDDGS-PRYFFNFI 281
Query: 341 PINDVEGMENNSVVDLIGVVSYI-SPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGN 399
++D+ N+ D+IGVV + +P+ ++R E KR + L D SG SV LTLWG
Sbjct: 282 KLSDLS--LGNAYCDVIGVVREVYAPSTVMVRSTQNELLKRDIILVDESG-SVRLTLWGP 338
Query: 400 FCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWF 459
D + GV +L +K+ +VS+FNG + T +Q+ I PD PEAH L W+
Sbjct: 339 KAELD-------IEGGV--VLGLKSVKVSEFNGISISTTGGSQVVINPDIPEAHELAGWY 389
Query: 460 EKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFC 519
+ GK+ Q V++ R + + R+ + ++K+ L + T+ T++++K D
Sbjct: 390 QSTGKDMQ-VALPR------KEEKRRLIQEVKENELA------YSTIQGTVMFLKEDALW 436
Query: 520 YTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQ 579
YT+C CNKKV+ G + C+RC+ + +C+YRY++ + D TG W++ F
Sbjct: 437 YTSCK----GEGCNKKVVMEDSGNYRCERCNMTYEDCNYRYMVTMHLGDFTGQVWLSLFD 492
Query: 580 ECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTV 639
E A G+ A+++ + +++ + +++ F +YLF++K K+++++DE R++ +
Sbjct: 493 EAAASFFGIPAQEMKRMS--EESPAELQALIKGMYFKEYLFRIKSKQDSYNDEIRMRYSG 550
Query: 640 VKAERYNYSSETRFILDLMDK 660
+ + + E++ +LD ++K
Sbjct: 551 LSSSPLDIRKESKRLLDAIEK 571
>gi|224006215|ref|XP_002292068.1| replication protein a [Thalassiosira pseudonana CCMP1335]
gi|220972587|gb|EED90919.1| replication protein a [Thalassiosira pseudonana CCMP1335]
Length = 570
Score = 255 bits (651), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 151/449 (33%), Positives = 247/449 (55%), Gaps = 26/449 (5%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
+ PI+ LN Y +W I+A+VT K +++ ++N +G+G +F LLDS G +++ T F
Sbjct: 133 VTPISGLNMYSNRWVIRAKVTNKSDVKTWSNAKGEGSLFSVTLLDSSGYDVKCTFFKEAV 192
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D+FY+ +E G++Y S G LK A +N+ + EI D S + L + + + R+ +
Sbjct: 193 DKFYNMLEEGRVYTFSGGRLKVANMAYNNCKSQFEITFDQNSEIHL--DAEGAEIRENYD 250
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLW 397
F I ++E ME NS VD++ VV ++ ++++ +K+G E K L + D SG V+LTLW
Sbjct: 251 FVKIAELENMEPNSYVDILAVVKHVGDVSTIVSKKSGKEMTKVDLVVEDDSGADVKLTLW 310
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKE 457
GN + + + P++A K R+ D+ G+ + S T + P P+ ++L +
Sbjct: 311 GNSAQNAENQFANC------PVVAFKKSRLGDYGGRSLSGGSPT---VNPQIPQTNQLMQ 361
Query: 458 WFEKEGKNTQSVSISRDSLSVGRADI--RKTVSQIKDEGLGTKEKPDWITVSATIVYIK- 514
W+ G +QS S+S G + RK V IK+E LG +KPDW++ ATI ++K
Sbjct: 362 WWGSNGNKSQSRSLSSSGGGKGPDPLEKRKDVCSIKEEHLGNSDKPDWLSFKATITFLKR 421
Query: 515 ----CDNFCYTACPIMIGDRPCNK--KVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQD 568
D YTAC PC K DG +HCD+C Q+ C R+I + D
Sbjct: 422 EKQGDDGAWYTACA--NSGEPCRNMFKATQTSDGNYHCDKCQQTHPNCVRRFIFSGTVAD 479
Query: 569 HTGLTWVTAFQECAEEIM-GMSAKDLYSLKYVDQNDEKFGE-VVRNATFTKYLFKLKVKE 626
T +W++ F E AE + GM+A +LY + ++Q D+ F + AT+T+++FK KVK+
Sbjct: 480 DTSTSWISMFNEQAETLFNGMTADNLYQ-QSIEQGDKDFYDSTFLKATYTEWVFKCKVKQ 538
Query: 627 ETFSDEQRVKSTVVKAERYNYSSETRFIL 655
E DE R+K++V +Y+ E+R +L
Sbjct: 539 EMVGDETRIKTSVASLVPVDYAKESRALL 567
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 14/126 (11%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PV+QV+ LK + + +R++++LSDG+ GMLATQ N LV S + S++
Sbjct: 1 PVVQVIHLKKI------DKSGGDERWKVILSDGTLHVSGMLATQLNPLVASSQITTNSIL 54
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDP---IGKPVPAQR--PSSNEQPGS--VTGNP 114
+ F N + + V ++ L+V ++ +P IG P Q+ P++ G+ + GN
Sbjct: 55 TVKDFIINTMGSGQKVCIL-LNVEVNGVNPGNRIGSPQDIQKVGPNTTATGGAQPMYGNV 113
Query: 115 QSNATG 120
Q+N G
Sbjct: 114 QANNNG 119
>gi|401827683|ref|XP_003888134.1| replication factor A protein 1 [Encephalitozoon hellem ATCC 50504]
gi|392999334|gb|AFM99153.1| replication factor A protein 1 [Encephalitozoon hellem ATCC 50504]
Length = 572
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 161/497 (32%), Positives = 266/497 (53%), Gaps = 41/497 (8%)
Query: 166 SFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAAL 225
+ S +ASFS+ +P P Q + Q+ R + S I L
Sbjct: 114 NISTGNASFSDNQPS---PGNLKRVEVNQQHWKQADEEDKKR-VKRDSNCDGEFTAINML 169
Query: 226 NPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDG-GEIRVTCFNAVADQFYHQ 284
NP+ KW IK RV KG++R + NQ+G+GKVF+F+L SDG ++++ CF+ D F+
Sbjct: 170 NPFHNKWVIKGRVVVKGDIRRFTNQKGEGKVFNFEL--SDGTAQVKIICFSDCVDIFFPI 227
Query: 285 VEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPIND 344
VE GK+Y V++G++K A K ++ D EI LD S V+ C DD S PR F+F I+D
Sbjct: 228 VEVGKVYTVTKGTVKMANKQYSTNPFDYEIILDKNSEVR-CAADDGS-PRYFFNFTKISD 285
Query: 345 VEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCND 403
+ ++ D+IGVV P+ ++R E KR + L D SG SV LTLWG
Sbjct: 286 IS--LGSAYCDVIGVVKEAYGPSTVMVRSTQNELLKRDVVLVDESG-SVRLTLWGQKAEI 342
Query: 404 DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEG 463
D + GV ++ +K+ +VS+FNG + T +Q+ + PD EAH L W++ G
Sbjct: 343 D-------IEEGV--VIGLKSIKVSEFNGISISTTGGSQVVVNPDISEAHELAGWYQSIG 393
Query: 464 KNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTAC 523
KN Q V++ R + + R+ V ++K+ L + T+ T++++K D Y +C
Sbjct: 394 KNMQ-VTLPR------KEEKRRLVQEVKENELA------YSTIQGTVMFLKEDALWYASC 440
Query: 524 PIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAE 583
CNKKVM G + C+RC+ + +C+YRY++ + D TG WV+ F E A
Sbjct: 441 K----GEGCNKKVMIEEGGNYRCERCNMTYEDCNYRYMVTMHLGDFTGQIWVSLFDEAAT 496
Query: 584 EIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAE 643
G+SAK++ + +++ + ++R F + LF++K K++ ++DE R++ + +
Sbjct: 497 GFFGISAKEMKEMS--EESPAELQALIRRMCFRECLFRIKSKQDNYNDELRMRYSGLSVS 554
Query: 644 RYNYSSETRFILDLMDK 660
+ E++ +LD+++K
Sbjct: 555 ALDILKESKRLLDVIEK 571
>gi|412986814|emb|CCO15240.1| predicted protein [Bathycoccus prasinos]
Length = 773
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 187/603 (31%), Positives = 295/603 (48%), Gaps = 37/603 (6%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
P+ ALNPY W++ RVT E+R ++N +G+GKV FD++D++G E++V CF A
Sbjct: 143 PLQALNPYQQGWSVCVRVTTPIEVRTWHNAKGEGKVLGFDVVDAEGSEMKVVCFGDCALN 202
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDD---ASIPRQQF 337
+++ +Y +S+ +L A +N + E+ LD ++VQ E+ IP+ Q+
Sbjct: 203 LAEKMQQYGVYEISKATLT-ASRNPRYAIGAYEMKLDHNTVVQPLPENAQGAMKIPKVQY 261
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLW 397
+FR I ++E + ++ +D++GVV +SP + M + G E KR++ LRD S VELTLW
Sbjct: 262 NFRNIKEIETLMKDTSIDVMGVVHEVSPISMQMLRTGGEKAKRSIKLRDDSSAEVELTLW 321
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKE 457
G + G +L+ M PILA K V +FNGK + + T + + PD P+A +L+
Sbjct: 322 GEHADGLGQKLETMLFENQHPILACKRACVGEFNGKNLSIRNNTVMDVNPDHPKAGQLRS 381
Query: 458 WFEKEGKNTQSVSI-----SRDSLSVGRADIRKTVSQIKDEGL-GTKEKPDWITVSATIV 511
W++ GK T+ V + GR D T+ QI++E G W+ +I
Sbjct: 382 WYDAGGK-TEDVQVLSGGMGGAGAVGGRGDRFATIRQIENEAANGGCSNAFWVVCRGSIT 440
Query: 512 YI-KCDNF-CYTACPIMIGDRPCNKKV-MNNGDGRWHCDRCDQSVV-ECDYRYILQFQIQ 567
YI DN Y ACP+ R C KK+ N +G W C+R +V+ D+RY+ ++
Sbjct: 441 YIHNSDNGPMYPACPMDHDGRKCQKKMRQNEMNGMWECERHYDTVIPSVDWRYLCTVKLA 500
Query: 568 DHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEE 627
D++G + F E E++ GM A D L +D + F + + + +Y FKLKV E+
Sbjct: 501 DYSGAVMASVFGEVGEKLFGMPAPDFKHL--LDTDFHAFEKKRDDIRWREYKFKLKVNED 558
Query: 628 TFSDEQRVKSTVVKAERY---NYSSETRFILDLMDKLKSGDSTSFALKAENIIPKPEMTY 684
T++D RVK T+ E N++ E++ +++ + KL +G+S E + +P
Sbjct: 559 TYNDMTRVKYTIQSVEPICDGNFADESKVLIEKLKKLHNGESI-----LEEKVDRPAGG- 612
Query: 685 TGTGNIGSRQTAPVVANYVGNNSNAGAASGLLANQMGQYGNQ--YSGSRLPAAGTSAARQ 742
V N + A G + G Y Q G A
Sbjct: 613 -------GGGAPSVATNEWKSGQGGVAMGGNMGGGAGGYNQQSYGGDGGGGGGGGGGASG 665
Query: 743 SCSSCGAVGHSSMNCPS--IMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARD 800
+C CG GH + CP+ G G GG G G S CYKC + GH+A
Sbjct: 666 NCYKCGEPGHWASKCPNQQTTGGGGGYGGGSGYGGGGGGGGGGASGNCYKCGEPGHFANK 725
Query: 801 CPS 803
CP+
Sbjct: 726 CPN 728
>gi|168053891|ref|XP_001779367.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669165|gb|EDQ55757.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 451
Score = 252 bits (644), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 154/456 (33%), Positives = 247/456 (54%), Gaps = 24/456 (5%)
Query: 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAV 277
R+ PI +LNPY G WTIK RVT+K LR + N RGDG VF+ +L D DG +I+ T F
Sbjct: 6 RVYPILSLNPYQGNWTIKVRVTSKSPLRTFKNARGDGNVFNVELTDEDGTQIQATMFKEA 65
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTS-MVQLCYEDDA-SIPRQ 335
AD+FY ++ K+Y +S+GSL+ A K + + ND E+ L+ S +V+ E +P
Sbjct: 66 ADKFYDVLQLDKVYFISKGSLRMANKQYATVKNDYEMTLNSNSEIVEADIESSTFKLPSA 125
Query: 336 QFHFRPINDVEGMENNS---VVDLIGVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRS 391
++F I+D+ G +S V D++GVV + P ++ RK N E KR + L D S ++
Sbjct: 126 TYNFTKISDL-GRHISSKRFVADVLGVVQSVGPLTTVNRKSNNDEIPKRDIVLLDQSRQT 184
Query: 392 VELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPE 451
V LTLW N +G L + PIL K R+SDF G + + T + I P P+
Sbjct: 185 VVLTLWNNMAVKEGASLADLIAES--PILMAKGLRLSDFQGVSLSSTMNTMVLINPVIPD 242
Query: 452 AHRLKEWFEKEGKNTQSVSISRDSLSVG----RADI--RKTVSQIKDEGLGTKEKPDWIT 505
A+ L+ W+E++G+ T S++ + SL G R+ R +S I +G + KP +
Sbjct: 243 ANELRTWYEEDGR-TASLTPAGASLPGGTNQNRSSFTDRAVLSDIIQPNVG-EGKPMYFN 300
Query: 506 VSATIVYIKCDN-FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQF 564
V A I +IK D Y AC + CN+KV+ + C+ C +C RYI+Q
Sbjct: 301 VRAYISFIKPDQAMWYLAC------QTCNRKVVEQSSSSYWCEGCQNHYDKCSRRYIMQA 354
Query: 565 QIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKV 624
++ D +G WV+AF E AE ++G+SA +L ++ +D ++ VR A + ++++
Sbjct: 355 KLSDSSGEAWVSAFNEQAESLLGVSADNLSEMRNQAGDDNQYQNAVRKAMWQPCVYRISA 414
Query: 625 KEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDK 660
+ + E+R + TV ++ +E++ +L + K
Sbjct: 415 AQTEYMSEKRQRLTVRTVVPVDWVAESKHLLAKITK 450
>gi|390367630|ref|XP_003731293.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Strongylocentrotus purpuratus]
Length = 575
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 189/671 (28%), Positives = 302/671 (45%), Gaps = 138/671 (20%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQ++ K + + + R+R++LSDG + MLATQ NE+V++G L + + +
Sbjct: 22 PVLQLLACKKMNAAASGKAV---DRYRLMLSDGEHTCTAMLATQLNEMVSTGELDVKAAM 78
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGV 121
+L ++ C+PI
Sbjct: 79 KLKNYS---------------------CNPIA---------------------------- 89
Query: 122 SLQHHNNTRVSQLPGDTDAVPAARHVGSNL--PPNYFKPEVGAGSGSFSNQS---ASFSN 176
N R + D D V +G ++ P P G G QS ++ S+
Sbjct: 90 ------NDRRVIVVLDLDIVKKGSEIGVSIGDPTPMRAPGQGGGPAPAQQQSRPDSTVSH 143
Query: 177 PRPEFSRP--YASNYARTPQAPYMQSPSMY--ANRGLVGKSEVPSRIIPIAALNPYMGKW 232
P+ +RP Y + A P Q + Y +N + G + P ++ PI++L PY +
Sbjct: 144 DPPQTARPTSYGTGAAPASATPNKQG-TFYGQSNSAMGGSTTSPKKVQPISSLTPYQNR- 201
Query: 233 TIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYL 292
L H N +Y
Sbjct: 202 ----------PLGHLPN--------------------------------------NIVYF 213
Query: 293 VSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNS 352
VSRG+LKPA + + ++ND E+ + +MV+ C E+D SIP QF F+ I+ +E +S
Sbjct: 214 VSRGTLKPANRQYTSINNDYELTFNNDTMVEPCVEEDVSIPAVQFDFKSISHLEDTPEDS 273
Query: 353 VVDLIGVVSYISP-TASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHM 411
++D+IGV S TA ++ + E KR+L L D S L N +
Sbjct: 274 MIDVIGVCKSTSDLTAVTIKSSNREVNKRSLQLVDDSQNE---PLASNSAEAEDF----- 325
Query: 412 CDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWF---EKEGKNTQS 468
D P++AVK R+S F G+ + + + + PD P+AH LK W +++QS
Sbjct: 326 -DGSGNPVIAVKGARLSGFGGRSLSVLQNSIFQVNPDIPKAHHLKGWCLTARVTPQDSQS 384
Query: 469 VSISRDSLSVGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMI 527
+S + S G A+ T + + LG EKPD+ TV TI++++ +N Y ACP
Sbjct: 385 ISTRQGSGGGGGANTNWMTFHDVHAQNLGQGEKPDYFTVKGTILFVRKENCMYMACP--- 441
Query: 528 GDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMG 587
CNKKV NGDG + C++C + YR +L + D T W T FQE AE+++
Sbjct: 442 -SAECNKKVSENGDGSYRCEKCSKDYENFKYRLLLSANVADSTDNQWATCFQETAEQLLL 500
Query: 588 MSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNY 647
SA++L SLK DQN+++F +V ++A F Y+F++++K ET+++E R+K T V A+ N
Sbjct: 501 KSAQELGSLK--DQNEKEFNQVFQDACFIDYMFRMRIKMETYNEEARLKCTCVSAQPINV 558
Query: 648 SSET-RFILDL 657
T + I D+
Sbjct: 559 RDYTNKLIKDI 569
>gi|19074669|ref|NP_586175.1| DNA REPLICATION FACTOR A PROTEIN 1 [Encephalitozoon cuniculi GB-M1]
Length = 623
Score = 246 bits (629), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 158/507 (31%), Positives = 273/507 (53%), Gaps = 54/507 (10%)
Query: 160 VGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRI 219
+ G+ SFS+ AS N R N R ++P + + +E
Sbjct: 166 ISTGNASFSDNQASPGNQR----HTNGVNQHR-------RAPDEEDKKRVKRDAEDEGEF 214
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDG-GEIRVTCFNAVA 278
I LNP+ KW IK RV K ++R + NQ+G+GKVF+F++ SDG ++++ CF+
Sbjct: 215 TAINMLNPFHNKWAIKGRVVMKSDIRRFTNQKGEGKVFNFEV--SDGTAQVKIICFSDCV 272
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D F+ VE GK+Y +++G++K A K ++ D EI LD +S V +D + P+ F+
Sbjct: 273 DIFFPIVEVGKVYTIAKGTVKMANKQYSTNPFDYEIILDKSSEVHRAADDGS--PKYFFN 330
Query: 339 FRPINDVEGMENNSVVDLIGVVSYI-SPTASLMRKNGTETQKRTLHLRDMSGRSVELTLW 397
F I+D+ N+ D IGVV + +P+ ++R +E KR L D G SV LTLW
Sbjct: 331 FVKISDL--TLGNAYCDTIGVVKEVYAPSTVMVRSTQSELLKRDAVLVD-DGGSVRLTLW 387
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKE 457
G + + +SG+ +LA+K+ +VS+FNG + T +Q+ PD EAH L+
Sbjct: 388 GP-------KAELEIESGM--VLALKSIKVSEFNGISISTTGGSQVVTNPDIAEAHELEG 438
Query: 458 WFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDN 517
W++ GK+ Q V++ R R + R+ + ++K+ L + TV T++++K D
Sbjct: 439 WYQSIGKDMQ-VTLPR------REEKRRLIQEVKESDL------TYSTVQGTVMFLKEDG 485
Query: 518 FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTA 577
YT+C CNKKV+ G + C+RC+ + +CDYRY++ + D +G WV+
Sbjct: 486 LWYTSCK----GEGCNKKVVMEDGGCYRCERCNMTYEDCDYRYMVTMHLGDFSGQMWVSL 541
Query: 578 FQECAEEIMGMSAKDLYSLKYVDQNDEKFGE---VVRNATFTKYLFKLKVKEETFSDEQR 634
F E A G+SA+++ + ++E GE ++R F + LF++K K+++++DE R
Sbjct: 542 FDEVATSFFGISAREMKVM-----SEEAPGELQALIRRMYFRECLFRIKSKQDSYNDEIR 596
Query: 635 VKSTVVKAERYNYSSETRFILDLMDKL 661
++ + + E + E++ +L +++K+
Sbjct: 597 MRYSGLSVENLDILKESKRLLGVIEKM 623
>gi|392512868|emb|CAD25779.2| DNA REPLICATION FACTOR A PROTEIN 1 [Encephalitozoon cuniculi GB-M1]
Length = 572
Score = 246 bits (628), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 158/507 (31%), Positives = 273/507 (53%), Gaps = 54/507 (10%)
Query: 160 VGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRI 219
+ G+ SFS+ AS N R N R ++P + + +E
Sbjct: 115 ISTGNASFSDNQASPGNQR----HTNGVNQHR-------RAPDEEDKKRVKRDAEDEGEF 163
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDG-GEIRVTCFNAVA 278
I LNP+ KW IK RV K ++R + NQ+G+GKVF+F++ SDG ++++ CF+
Sbjct: 164 TAINMLNPFHNKWAIKGRVVMKSDIRRFTNQKGEGKVFNFEV--SDGTAQVKIICFSDCV 221
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D F+ VE GK+Y +++G++K A K ++ D EI LD +S V +D + P+ F+
Sbjct: 222 DIFFPIVEVGKVYTIAKGTVKMANKQYSTNPFDYEIILDKSSEVHRAADDGS--PKYFFN 279
Query: 339 FRPINDVEGMENNSVVDLIGVVSYI-SPTASLMRKNGTETQKRTLHLRDMSGRSVELTLW 397
F I+D+ N+ D IGVV + +P+ ++R +E KR L D G SV LTLW
Sbjct: 280 FVKISDL--TLGNAYCDTIGVVKEVYAPSTVMVRSTQSELLKRDAVLVD-DGGSVRLTLW 336
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKE 457
G + + +SG+ +LA+K+ +VS+FNG + T +Q+ PD EAH L+
Sbjct: 337 GP-------KAELEIESGM--VLALKSIKVSEFNGISISTTGGSQVVTNPDIAEAHELEG 387
Query: 458 WFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDN 517
W++ GK+ Q V++ R R + R+ + ++K+ L + TV T++++K D
Sbjct: 388 WYQSIGKDMQ-VTLPR------REEKRRLIQEVKESDL------TYSTVQGTVMFLKEDG 434
Query: 518 FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTA 577
YT+C CNKKV+ G + C+RC+ + +CDYRY++ + D +G WV+
Sbjct: 435 LWYTSCK----GEGCNKKVVMEDGGCYRCERCNMTYEDCDYRYMVTMHLGDFSGQMWVSL 490
Query: 578 FQECAEEIMGMSAKDLYSLKYVDQNDEKFGE---VVRNATFTKYLFKLKVKEETFSDEQR 634
F E A G+SA+++ + ++E GE ++R F + LF++K K+++++DE R
Sbjct: 491 FDEVATSFFGISAREMKVM-----SEEAPGELQALIRRMYFRECLFRIKSKQDSYNDEIR 545
Query: 635 VKSTVVKAERYNYSSETRFILDLMDKL 661
++ + + E + E++ +L +++K+
Sbjct: 546 MRYSGLSVENLDILKESKRLLGVIEKM 572
>gi|393245622|gb|EJD53132.1| replication factor-a protein [Auricularia delicata TFB-10046 SS5]
Length = 617
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 144/456 (31%), Positives = 242/456 (53%), Gaps = 37/456 (8%)
Query: 216 PSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFN 275
P + PI L+PY KWTI+ARVT K E++ ++N +G+GK+F +D GEIR T FN
Sbjct: 185 PQPVYPIEGLSPYQNKWTIQARVTNKSEMKSWSNTKGEGKLFSCTFMDQ-SGEIRATAFN 243
Query: 276 AVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQ 335
A++ + +++ G +Y V++ + A+K F++L N+ EI +D + ++ +DD +P Q
Sbjct: 244 TAAEELFEKLKEGNVYYVTKARVSVAKKKFSNLPNEYEITMDRNTEIEEIVDDDIDVPLQ 303
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGT-ETQKRTLHLRDMSGRSVEL 394
++ F + ++ + + V D+IGVV + P + K E KR L + D S SV L
Sbjct: 304 KYEFVSLKTLDTLNKDEVCDVIGVVQEVGPVNKFLAKTTQRELTKRDLTIVDQSECSVRL 363
Query: 395 TLWG----NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFP 450
TLWG N+ DD P++A K +V DF G+ + +S+ L I+PD
Sbjct: 364 TLWGKQAENWSRDDK------------PVVAFKGCKVGDFGGRTLSLLSSGSLAIDPDLE 411
Query: 451 EAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKT----VSQIKDEGLGTKEKPDWITV 506
E+HRL+ WF+ +GK+ S S V I + ++ +++ + ++P
Sbjct: 412 ESHRLRGWFDAQGKDATFHSFSSGGGGVASGPIDRLEAMPLAAVREMEI-VIDQPQLFVT 470
Query: 507 SATIVYIKCDN-FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQ 565
A +V++K D+ Y AC + CNKK+ + G+W C+ C Q+ E YRY+L
Sbjct: 471 RAAVVHVKADDKMWYAAC------QRCNKKI-SEASGKWRCEHCKQNWDEPSYRYMLSIA 523
Query: 566 IQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVK 625
+ D+T W+TAF + I+G S DL+ +K Q++ F +V+ A Y F + K
Sbjct: 524 VADNTSQCWLTAFNDAGLTIVGQSGNDLHKIK--GQDESGFNAIVKKAVGKYYTFSCRAK 581
Query: 626 EETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
ET+ D R K T+ + + ++ E +D ++K+
Sbjct: 582 SETYQDLTRTKYTISRLQPLDWKQE----IDDLEKI 613
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P+LQV+ +K +VS + + R R ++SDG M TQ N+ + G L +VV
Sbjct: 29 PILQVVQIKEIVSNKNGGSSN---RRRGLVSDGRNYAPVMFTTQLNQQIEEGKLGRNAVV 85
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKP 95
R+ TCN +Q + ++++++++V+ IG+P
Sbjct: 86 RVKSMTCNTMQEKRLIVLLEVEVLEALEYKIGEP 119
>gi|449329996|gb|AGE96262.1| DNA replication factor a protein 1 [Encephalitozoon cuniculi]
Length = 623
Score = 246 bits (627), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 158/507 (31%), Positives = 272/507 (53%), Gaps = 54/507 (10%)
Query: 160 VGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRI 219
+ G+ SFS+ AS N R N R ++P + + +E
Sbjct: 166 ISTGNASFSDNQASPGNQR----HTNGVNQHR-------RAPDEEDKKRVKRDAEDEGEF 214
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDG-GEIRVTCFNAVA 278
I LNP+ KW IK RV K ++R + NQ+G+GKVF+F++ SDG ++++ CF+
Sbjct: 215 TAINMLNPFHNKWAIKGRVVMKSDIRRFTNQKGEGKVFNFEV--SDGTAQVKIICFSDCV 272
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D F+ VE GK+Y +++G++K A K ++ D EI LD +S V +D + P+ F+
Sbjct: 273 DIFFPIVEVGKVYTIAKGTVKMANKQYSTNPFDYEIILDKSSEVHRAADDGS--PKYFFN 330
Query: 339 FRPINDVEGMENNSVVDLIGVVSYI-SPTASLMRKNGTETQKRTLHLRDMSGRSVELTLW 397
F I+D+ N+ D IGVV + +P+ ++R +E KR L D G SV LTLW
Sbjct: 331 FVKISDL--TLGNAYCDTIGVVKEVYAPSTVMVRSTQSELLKRDAVLVD-DGGSVRLTLW 387
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKE 457
G + + +SG+ +LA+K+ +VS+FNG + T +Q+ PD EAH L
Sbjct: 388 GP-------KAELEIESGM--VLALKSIKVSEFNGISISTTGGSQVVTNPDIAEAHELAG 438
Query: 458 WFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDN 517
W++ GK+ Q V++ R R + R+ + ++K+ L + TV T++++K D
Sbjct: 439 WYQSIGKDMQ-VTLPR------REEKRRLIQEVKESDL------TYSTVQGTVMFLKEDG 485
Query: 518 FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTA 577
YT+C CNKKV+ G + C+RC+ + +CDYRY++ + D +G WV+
Sbjct: 486 LWYTSCK----GEGCNKKVVMEDGGCYRCERCNMTYEDCDYRYMVTMHLGDFSGQMWVSL 541
Query: 578 FQECAEEIMGMSAKDLYSLKYVDQNDEKFGE---VVRNATFTKYLFKLKVKEETFSDEQR 634
F E A G+SA+++ + ++E GE ++R F + LF++K K+++++DE R
Sbjct: 542 FDEVATSFFGISAREMKVM-----SEEAPGELQALIRRMYFRECLFRIKSKQDSYNDEIR 596
Query: 635 VKSTVVKAERYNYSSETRFILDLMDKL 661
++ + + E + E++ +L +++K+
Sbjct: 597 MRYSGLSVENLDILKESKRLLGVIEKM 623
>gi|189241203|ref|XP_970077.2| PREDICTED: similar to replication factor a 1, rfa1 [Tribolium
castaneum]
Length = 585
Score = 245 bits (626), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 136/452 (30%), Positives = 246/452 (54%), Gaps = 35/452 (7%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PIA+LNP+ W I+ARV K +R+++N +G+GK+F DL+D GGEIR T F +
Sbjct: 154 ISPIASLNPFHNNWIIRARVVNKTNVRNWSNAKGEGKLFSIDLVDK-GGEIRCTAFRDLV 212
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D+F+ ++E K+Y +S+ L+P + F L + E++ ++++ Y+D+ IP+ ++
Sbjct: 213 DKFFDRLEVDKVYYISKCQLQPINRQFCSLKHQFEMYFTPETIIEPSYDDNEIIPQITYN 272
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLW 397
F I+ V ME ++VD+IGV IS S + K+ E QKR L L D + ++ L LW
Sbjct: 273 FTTIDKVAVMEAGTIVDVIGVCKTISELQSFVAKSTNREMQKRQLVLVDQTKTAISLNLW 332
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNG-KVVGTISTTQLFIEPDFPEAHRLK 456
G+ + + +G P++ VK ++ +F G K + + T+ L I+P+ E H L+
Sbjct: 333 GS-------QAESFAVTG-NPVILVKNAKIYEFRGAKSITLMGTSLLKIDPEIRETHILR 384
Query: 457 EWFEKEGKNTQSVSISRDS-------LSVGRADIRKTVSQIKDEGLGTKEKPDWITVSAT 509
W+ EG + ++S + L+ A ++T+S EKP + T
Sbjct: 385 RWYHSEGNQVEITNVSHRNGYGSTPWLTFKEAR-QQTIS----------EKPLYYQTFGT 433
Query: 510 IVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDH 569
I+ ++ D Y +CP + C KKV++ +G + C++C++ YR ++ + D
Sbjct: 434 ILLVRLDRAVYKSCP----NADCQKKVLDLENGMYRCEKCNREFPNFKYRLLVSMNVADS 489
Query: 570 TGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETF 629
+ WVT F AE+I+G +A+++ L ++ + + + A F +++FK + K ET+
Sbjct: 490 SSSQWVTVFSSEAEKILGKTAQEIGEL--METDPDTVANMFEEAQFKQFIFKCRAKIETY 547
Query: 630 SDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
+DEQ++K+ VV +Y +++D ++K
Sbjct: 548 NDEQKMKTVVVTVAPVDYEEYNAYLVDRIEKF 579
>gi|167519220|ref|XP_001743950.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777912|gb|EDQ91528.1| predicted protein [Monosiga brevicollis MX1]
Length = 540
Score = 243 bits (620), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 150/477 (31%), Positives = 241/477 (50%), Gaps = 57/477 (11%)
Query: 192 TPQAPYMQSPSMYANRGLVGKSEVPS-----RIIPIAALNPYMGKWTIKARVTAKGELRH 246
+P+ PY R K+ +P+ R IP+ +LNPY +W I+ RV AK +R
Sbjct: 102 SPENPY---------RKASAKTPLPAFGGDDRAIPLTSLNPYDRRWAIRVRVVAKPPIRT 152
Query: 247 YNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFN 306
YN+ RG+GK+F DL+D+ GEIR T FNA D+ Y E K+Y++ G +KP + FN
Sbjct: 153 YNSDRGEGKIFSVDLVDA-SGEIRATGFNADCDRLYPLFEKNKVYMIQGGRIKPKNRRFN 211
Query: 307 HLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGM----ENNSVVDLIGVVSY 362
L ++ EI D T+ V + A ++F+ ++E M + + D++ V+
Sbjct: 212 QLSHEYEITFDSTTTVTESKDMGA------YNFKSFAELEAMPITRDTMAFADILAVIKE 265
Query: 363 ISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFP--I 419
++ +++ R E KR + L D S+ TLWG + D+G P +
Sbjct: 266 VADVTTIVTRAAQKELSKREVTLVDKDNVSLSCTLWGK-------EAEGFVDAGGHPGVV 318
Query: 420 LAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSI----SRDS 475
+A+KA R+SDFNG+ + S + I PD EAH LK W V I SR
Sbjct: 319 MAIKAARISDFNGRSLSVASNSNYSINPDLKEAHELKGW---------CVLIFGSRSRVC 369
Query: 476 LSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKK 535
+ + + R+ GL +K V+ TI+Y+K DN Y ACP CNKK
Sbjct: 370 MGFDKWNARQFWHLTATVGL-PDDKSVAFQVTGTILYVKSDNIYYQACPT------CNKK 422
Query: 536 VMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYS 595
V+ DG + C +C +S E YR + F I D +G W+ +F E AE ++G SA ++ S
Sbjct: 423 VVEESDGSYECQKCAKSYKEFKYRLLTSFSIGDFSGSQWLQSFSEVAESVLGHSADEIGS 482
Query: 596 LKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETR 652
+ +D +F + +ATF + F+ + + +T++D+ R++ +V A +Y +++
Sbjct: 483 --WSANSDPRFTTALADATFKTWTFRCRARTDTYNDQSRLRVSVASAVPIDYVQDSK 537
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 29 MVLSDGS-RSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNRMIVIVMDLDVIID 87
+ +SDG + MLATQ N L+ + +++ S+VR+ + CN++ NR I+I++D++V+
Sbjct: 1 LSISDGKYKHNSAMLATQLNNLIQNDYIRVNSIVRVKQGVCNLVSNRRILILLDVEVVAS 60
Query: 88 KCDPI 92
D +
Sbjct: 61 DYDGV 65
>gi|156089527|ref|XP_001612170.1| replication factor-a protein 1 (rpa1) family protein [Babesia
bovis]
gi|154799424|gb|EDO08602.1| replication factor-a protein 1 (rpa1) family protein [Babesia
bovis]
Length = 684
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 179/565 (31%), Positives = 274/565 (48%), Gaps = 56/565 (9%)
Query: 90 DPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPAARHVGS 149
+P+ KPV EQ G S+ T + NT +S +P + + S
Sbjct: 141 EPVSKPV--------EQAGGF--QTSSHVTKQPMAQSGNTTLSSMPSSNTINTSTSYAQS 190
Query: 150 NLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYANRGL 209
+ P F + G N +P+ S PYA+N ++ P ++
Sbjct: 191 HHAPTSFSHDSSTNHGPIRNTDDQLMLKKPQ-SAPYATNTSK----PVVK---------- 235
Query: 210 VGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEI 269
VG S I IA L Y KW+I+ARV K ++ +NNQ G+G++F DL D + G+I
Sbjct: 236 VGDGN-NSGYISIADLTIYTPKWSIRARVLNKTHIKKFNNQWGEGQLFSVDLCD-NSGDI 293
Query: 270 RVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDD 329
R T F ++Y+ +E G++Y +S G L+PA K FN L + E+ LD S + L DD
Sbjct: 294 RATLFGEAVTKWYNFIEEGQVYSISGGQLRPANKKFNSLSHACEMSLDENSQI-LLDRDD 352
Query: 330 ASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMS 388
SIP + +F PI VE + + ++D+IGVV+ + S K+ GT + KR + L D S
Sbjct: 353 QSIPLIRCNFVPIKQVERLSSGDIIDVIGVVARFNDIKSYQSKSTGTTSDKREILLCDSS 412
Query: 389 GRSVELTLWGNFCNDDGLRLQHMCDSGV--FPILAVKAGRVSDFNGKVVGTISTTQLFIE 446
G SV +TLW ++Q S + PI+A+K RV+++ GK + TI TT + I
Sbjct: 413 GSSVWVTLWNK-------KVQQFLTSELETHPIIAMKGVRVNEWQGKKLDTIGTTHITIN 465
Query: 447 PDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRK--TVSQIKDEGLGTKEKPD-- 502
P PE +LK W+ EG Q R S+ DI ++Q ++ K D
Sbjct: 466 PAVPEVAKLKNWWATEGSQMQ-FDAGRSSIDNNIEDIISIGALTQAANQAYQFKALGDSG 524
Query: 503 -WITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYI 561
T + I+ + F + AC C +K++N G+W C RC + + + YI
Sbjct: 525 ITFTARGMVEVIRENTFSWPACI------ECQRKMVNEL-GQWVCSRC-KCTRQPRHTYI 576
Query: 562 LQFQIQDHTGLTWVTAFQECAEEIM-GMSAKDLYSL---KYVDQNDEKFGEVVRNATFTK 617
L +I D TG W TA +EIM G+ A ++ +L ++ + + F + A T+
Sbjct: 577 LSMKISDDTGHLWATASSIVGDEIMNGIPAAEVLALAGNNDINVDGKNFMNIFEEARLTE 636
Query: 618 YLFKLKVKEETFSDEQRVKSTVVKA 642
Y+FK+KV ET+ DE R+K V KA
Sbjct: 637 YIFKIKVYTETYMDEPRIKYRVTKA 661
>gi|300708826|ref|XP_002996585.1| hypothetical protein NCER_100307 [Nosema ceranae BRL01]
gi|239605898|gb|EEQ82914.1| hypothetical protein NCER_100307 [Nosema ceranae BRL01]
Length = 573
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 137/451 (30%), Positives = 244/451 (54%), Gaps = 35/451 (7%)
Query: 212 KSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRV 271
++E P++ I ++NP+ KW IK R+ K ++R ++N++G+GK+F F++ D D G+I+V
Sbjct: 152 QTEDPNKYTQINSINPFCNKWIIKGRIVLKSDIRKFSNKKGEGKLFSFEIAD-DSGQIKV 210
Query: 272 TCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDAS 331
F+ D FY +E G++Y + +G +K ++K F++ +ND EI LD+ S ++ +D
Sbjct: 211 VAFSESVDIFYPIIEIGRVYTIQKGEIKMSKKTFSNNNNDYEIQLDVNSEIKKV--EDNE 268
Query: 332 IPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRK-NGTETQKRTLHLRDMSGR 390
P+ F+F I D+ +N+ +D++G+V S + K E+ +R + L D +G
Sbjct: 269 TPKFFFNFVKIKDITS--SNAPIDIVGIVKEAGEAVSFIVKATQKESLRRNITLIDETG- 325
Query: 391 SVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFP 450
S+ T WG ++ V +LA+K+ +VSDF G + +I T+Q+ PD
Sbjct: 326 SIRATFWGAKAEEE---------IEVDSVLAIKSIKVSDFGGVSLSSIHTSQIHKNPDIS 376
Query: 451 EAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATI 510
E+H L W+ EGKN + RD +D++ +E P + V AT+
Sbjct: 377 ESHSLLGWYNTEGKNVKIDLPERDLKIFNISDVK------------NQEMP-YSAVRATL 423
Query: 511 VYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHT 570
++IK DN Y +C + C KKV N G + C++CD++ EC +RY++ I D T
Sbjct: 424 MFIKEDNLMYDSCK----EENCTKKVYKNEFGEYRCEKCDKNSYECTHRYLIHANISDST 479
Query: 571 GLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFS 630
G W T F + A ++GMSA D + D N + ++ + +Y+ KL+ +++ ++
Sbjct: 480 GQLWATLFNDQAILLLGMSASDFREMADNDPNQSQM--FIKKFLYREYIIKLRSRQDNYN 537
Query: 631 DEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
DE +++ + + NY ET+ + ++KL
Sbjct: 538 DEIKMRHNISEIREVNYKEETKKEILYVEKL 568
>gi|255074989|ref|XP_002501169.1| hypothetical protein MICPUN_57417 [Micromonas sp. RCC299]
gi|226516432|gb|ACO62427.1| hypothetical protein MICPUN_57417 [Micromonas sp. RCC299]
Length = 525
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 143/457 (31%), Positives = 245/457 (53%), Gaps = 27/457 (5%)
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
+ I ALNPYMG WT+KA++ KG +R + N RG+ V + D++G I+ T +
Sbjct: 71 LAINALNPYMGTWTVKAKLAVKGNIRTFRNARGESSVCTLEFCDAEGTAIQATLWKDAIA 130
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ--F 337
++ +E GK+Y VS+GSL+PA K ++ ++N+ E+ LD ++LC + DA + + Q +
Sbjct: 131 KYDSILEVGKVYYVSKGSLRPANKKYSSVNNEYEMSLDGRCEIELCADGDADVDKMQRAY 190
Query: 338 HFRPINDV-EGMENNSVVDLIGVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVELT 395
I+ + + VD++ VV+ + S+ RK +G E Q+R L L D + R+V T
Sbjct: 191 DLCKIDQLARKIGGRGTVDILAVVTAVGDLGSIKRKSDGGELQRRDLTLLDETKRTVTCT 250
Query: 396 LWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPE---- 451
LW + + G L++M V P++A++ RVSD+NG V T++ ++L +EP +
Sbjct: 251 LWNSLAVEQGESLKNM----VAPVVAIRGVRVSDYNGVSVSTLARSELVLEPASADIATK 306
Query: 452 AHRLKEWFEKEGKNTQSVSISRDSLSVGRA--------DIRKTVSQIKDEGLGTKEKPDW 503
L+ W++ +G ++V+ S RA R T + ++ + +P
Sbjct: 307 TAALRAWYDADGATAETVAAGEGLASARRAGDGSGRSLTERTTFNALQPAIVPAATEPPA 366
Query: 504 ITV--SATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYI 561
I V +TIV IK D Y A G+ NKKV+ +G+W + EC YRYI
Sbjct: 367 IGVVGHSTIVLIKPDQAMYYASNPEEGN---NKKVVPTAEGKWEDPATGKVYDECAYRYI 423
Query: 562 LQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFK 621
++ ++ D +G W+ F E A E++G+ A +L+ LK N + ++ A F+ +
Sbjct: 424 VRMKMSDASGGGWINVFHEQAVEMLGIGAGELHELK--TNNPAAYERKIKAAQFSSWNVM 481
Query: 622 LKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLM 658
+K K E + E R + TV+K ++ +Y++E+R +L LM
Sbjct: 482 VKAKTEEYQGESRRRLTVMKCQKPDYAAESRNLLKLM 518
>gi|323450756|gb|EGB06636.1| hypothetical protein AURANDRAFT_71962 [Aureococcus anophagefferens]
Length = 1589
Score = 239 bits (610), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 150/445 (33%), Positives = 235/445 (52%), Gaps = 25/445 (5%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQF 281
I+ LNPY ++TIKARVTAKG +R +N G +F DLLD GEIR T F VAD+
Sbjct: 908 ISELNPYQQRFTIKARVTAKGPMRTWNKPTSSGNLFSVDLLDG-SGEIRGTFFKEVADKV 966
Query: 282 YHQVEAGKIYLV--SRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
+ +E GK+Y+ + G LKP+ K + + ++ E+ ++ +DD +I R +
Sbjct: 967 FPLLEEGKVYVFQETSGRLKPSNKQYTSIPHEFEVTFGNVTVEPA--DDDGAIARIVGDW 1024
Query: 340 RPINDVE--GMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTL 396
+ I+ G VD++GV+ P + ++ G E KR + L D SG V LT
Sbjct: 1025 KKISMFADGGGPREGNVDIVGVIKAAFPAGQITSKRTGQELTKREVVLCDDSGYDVRLTF 1084
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIE-PDFPEAHRL 455
WG D + P+LA K RVSDF G + + +QL + + PE+ RL
Sbjct: 1085 WGELALRDDAFFEAQ------PVLAAKGLRVSDFGGVSLSSGFGSQLIFDGQEDPESLRL 1138
Query: 456 KEWF-EKEGKNTQSVSISRDSLSVGRADI---RKTVSQIKDEGLGTKEKPDWITVSATIV 511
+ W+ E G+ +V+++ S G R + IK LG EKPD++T T+
Sbjct: 1139 RAWWTEGGGREAPTVALTGASGGSGAPAAFGDRIVLDDIKGRQLGFGEKPDYVTFKGTLN 1198
Query: 512 YIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTG 571
++K D Y AC C KKV+ N DG WHC++C + EC RY++ D +
Sbjct: 1199 FVKTDRLWYEAC----AQEGCQKKVVQNSDGTWHCEKCQATNAECKRRYLMSSTFVDDSA 1254
Query: 572 LTWVTAFQECAEEI-MGMSAKDLYSLK-YVDQNDEKFGEVVRNATFTKYLFKLKVKEETF 629
+WV+AF + A +I +G++A DL + K V+ D KF + ++ F +Y+ K++VK E +
Sbjct: 1255 QSWVSAFNDHATKIFLGVNADDLAAYKEEVENEDGKFEDYMKQFLFKQYVVKVRVKSEVW 1314
Query: 630 SDEQRVKSTVVKAERYNYSSETRFI 654
++ RVK+++V +Y +E+R I
Sbjct: 1315 QEQSRVKASIVDIFDLDYVAESRDI 1339
Score = 66.2 bits (160), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PV+QV++ + + Q RFR+V+SDG+R M A+Q ++ G LQ G
Sbjct: 750 PVIQVINATEI---KNNQTGAGSGRFRIVISDGARFTTSMAASQLATMLKGGELQAGCFA 806
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKP 95
RL KF N IQN+ IVI++D+ V+ +G P
Sbjct: 807 RLNKFVLNTIQNKSIVILLDVAVVGAPTGLVGAP 840
>gi|270013263|gb|EFA09711.1| hypothetical protein TcasGA2_TC011844 [Tribolium castaneum]
Length = 593
Score = 238 bits (607), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 136/460 (29%), Positives = 246/460 (53%), Gaps = 43/460 (9%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PIA+LNP+ W I+ARV K +R+++N +G+GK+F DL+D GGEIR T F +
Sbjct: 154 ISPIASLNPFHNNWIIRARVVNKTNVRNWSNAKGEGKLFSIDLVDK-GGEIRCTAFRDLV 212
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D+F+ ++E K+Y +S+ L+P + F L + E++ ++++ Y+D+ IP+ ++
Sbjct: 213 DKFFDRLEVDKVYYISKCQLQPINRQFCSLKHQFEMYFTPETIIEPSYDDNEIIPQITYN 272
Query: 339 FRPINDVEGMENNSVV--------DLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSG 389
F I+ V ME ++V D+IGV IS S + K+ E QKR L L D +
Sbjct: 273 FTTIDKVAVMEAGTIVGNWRMSILDVIGVCKTISELQSFVAKSTNREMQKRQLVLVDQTK 332
Query: 390 RSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNG-KVVGTISTTQLFIEPD 448
++ L LWG+ + + +G P++ VK ++ +F G K + + T+ L I+P+
Sbjct: 333 TAISLNLWGS-------QAESFAVTG-NPVILVKNAKIYEFRGAKSITLMGTSLLKIDPE 384
Query: 449 FPEAHRLKEWFEKEGKNTQSVSISRDS-------LSVGRADIRKTVSQIKDEGLGTKEKP 501
E H L+ W+ EG + ++S + L+ A ++T+S EKP
Sbjct: 385 IRETHILRRWYHSEGNQVEITNVSHRNGYGSTPWLTFKEAR-QQTIS----------EKP 433
Query: 502 DWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYI 561
+ TI+ ++ D Y +CP + C KKV++ +G + C++C++ YR +
Sbjct: 434 LYYQTFGTILLVRLDRAVYKSCP----NADCQKKVLDLENGMYRCEKCNREFPNFKYRLL 489
Query: 562 LQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFK 621
+ + D + WVT F AE+I+G +A+++ L ++ + + + A F +++FK
Sbjct: 490 VSMNVADSSSSQWVTVFSSEAEKILGKTAQEIGEL--METDPDTVANMFEEAQFKQFIFK 547
Query: 622 LKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
+ K ET++DEQ++K+ VV +Y +++D ++K
Sbjct: 548 CRAKIETYNDEQKMKTVVVTVAPVDYEEYNAYLVDRIEKF 587
>gi|449688518|ref|XP_004211765.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Hydra magnipapillata]
Length = 398
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 144/441 (32%), Positives = 241/441 (54%), Gaps = 57/441 (12%)
Query: 41 MLATQRNELVTSGLLQIGSVVRLTKFTCNVIQ-NRMIVIVMDLDVIIDKCDPIGKPVPAQ 99
ML TQ N+ V ++++ V+++ K+TCNVIQ R ++I+++L +++
Sbjct: 1 MLGTQLNDTVQEDMVEVRCVLQMDKYTCNVIQGTRKVIIILELKIVL------------- 47
Query: 100 RPSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPE 159
++E PG + G P ++S L + + + LPP K
Sbjct: 48 --KASEVPGKI-GEP--------------VQISDLLTEQENL---------LPPPIKKEN 81
Query: 160 VGAGSG--SFSNQ--SASFSNPR--PEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKS 213
V S + SNQ SAS +N + P ++P SN + + Q PS Y+ G
Sbjct: 82 VNGSSKLQNISNQIKSASTNNTKNLPVPNKPL-SNQKPSAYSAANQKPSGYSTAGAGSVV 140
Query: 214 EVPSR-IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVT 272
+ S+ + PI++L PY +WTI+AR+T K +R ++N RGDGK+F DL+D + GEIR T
Sbjct: 141 DSNSKSVFPISSLTPYQNRWTIRARITNKSSIRTWSNSRGDGKLFSIDLVD-ESGEIRAT 199
Query: 273 CFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASI 332
FN V D++Y +E GK+Y +++GSLK A K ++ L ND E+ L+ S+V+LC D +
Sbjct: 200 AFNEVVDKYYDLLEIGKVYYITKGSLKTANKQYSSLKNDYEMTLNNDSLVELC-NDLCDL 258
Query: 333 PRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRS 391
P QF+F+ I +E + ++++D++G+V S + K + KR + + D SG +
Sbjct: 259 PTLQFNFKQIKSIEDVNKDALIDIVGIVKSSSEMQQITSKATNKQVWKRDITIVDQSGSA 318
Query: 392 VELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPE 451
V+ T+WG+ + + + D P++A+K +VSDF G+ + ++++ I PD PE
Sbjct: 319 VQATIWGS----EAEKFEEYTDKN--PVVAIKGAKVSDFGGRSLSILNSSIFHINPDIPE 372
Query: 452 AHRLKEWFEKEGKNTQSVSIS 472
A+ L+ WF+ G N Q+ SIS
Sbjct: 373 AYELRGWFDNGGINEQTTSIS 393
>gi|269860800|ref|XP_002650118.1| replication factor-A protein 1 [Enterocytozoon bieneusi H348]
gi|220066438|gb|EED43919.1| replication factor-A protein 1 [Enterocytozoon bieneusi H348]
Length = 567
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 132/439 (30%), Positives = 243/439 (55%), Gaps = 34/439 (7%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PI +NP++ W I+ R+ K L+ +NN+ G+GKVF F+++D + +I+V CF A+
Sbjct: 161 PIKDINPFLINWKIQGRILQKTNLKKFNNKNGEGKVFSFEIMD-ETEQIKVICFGDAAEM 219
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
FY +E +IY ++ G +K A K FN + D EI LD S+++LC D ++IP F F+
Sbjct: 220 FYPLIENNQIYSLTHGQIKMANKRFNTNNCDYEIHLDTNSIIELC-NDASNIPMISFKFK 278
Query: 341 PINDVEGMENNSVVDLIGVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVELTLWGN 399
IN++ + S+VD++G++ I P +++ K + E KR + + D +G +++TLWG
Sbjct: 279 KINELSLI--TSLVDIVGIIKEIYPIQNIITKSDNREISKRDILVIDETGY-IKVTLWG- 334
Query: 400 FCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWF 459
D L+ ++ DS ++ +K +V ++NG +G++S++Q+ + PE +L +W+
Sbjct: 335 ---DKALQ-EYQKDS----VICLKGFKVIEYNGINLGSVSSSQVVLNSMLPEVIKLVKWY 386
Query: 460 EKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFC 519
E EGK +S+ + + R I T+ ++ + TI YIK DN
Sbjct: 387 ETEGK---EISVEKTKIYTKRYSIANI----------TESNIEYGIIHGTITYIKEDNLY 433
Query: 520 YTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQ 579
Y ACP C+KKV+ + C++C+ C+YRY+ I D TG W+ F
Sbjct: 434 YMACP----TDGCSKKVIQEDLEHYRCEKCNNVFKTCNYRYMTVLGISDFTGQLWINVFN 489
Query: 580 ECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTV 639
+ A++I +SA+DL+ LK +D ++ ++V+N ++ K++V ++ +++E +
Sbjct: 490 DVAKQIFNISAEDLHKLKEIDSDNA--TKLVKNIIGKEFAIKVRVVKQIYNEETIKRINC 547
Query: 640 VKAERYNYSSETRFILDLM 658
++ + N E + + +L+
Sbjct: 548 LELDEINLDQEIKLMTELI 566
>gi|242019128|ref|XP_002430017.1| Replication protein A 70 kDa DNA-binding subunit, putative
[Pediculus humanus corporis]
gi|212515079|gb|EEB17279.1| Replication protein A 70 kDa DNA-binding subunit, putative
[Pediculus humanus corporis]
Length = 600
Score = 233 bits (593), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 142/443 (32%), Positives = 238/443 (53%), Gaps = 27/443 (6%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI++L+PY +W IKARVT K R+Y++ RG+GK+F D + GEI+ T FN+
Sbjct: 168 IHPISSLSPYQNRWCIKARVTNKQAPRNYSSARGEGKLFSVVFTD-ESGEIKCTGFNSAV 226
Query: 279 DQF--YHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
D+F QV K+ L N L +L VQ C EDD +P
Sbjct: 227 DKFSDLLQVSLRKLKLFYTYLFS------NFLTESFNFYLVSNCSVQPC-EDDVGLPSAV 279
Query: 337 FHFRPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELT 395
++F PI+ + M +S+VD+IGV + + ++ R G E +KR + L D SG SV +T
Sbjct: 280 YNFVPISKLIEMSVDSIVDVIGVAKHATDVQNITARSTGRELKKREVVLVDSSGASVSMT 339
Query: 396 LWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDF-NGKVVGTISTTQLFIEPDFPEAHR 454
LWG+ + + D P++AVK+ R+++F GK + + + +PD EAH+
Sbjct: 340 LWGS----EAVGF----DCSENPVVAVKSARLTEFMGGKSLSVQMNSTVLRDPDIDEAHK 391
Query: 455 LKEWFEKEGKNTQSVSISRDSLSVGRADIRKTV-SQIKDEGLGTKEKPDWITVSATIVYI 513
L+ W+ G + SIS S ++ + + +GLG +K D+ + ++
Sbjct: 392 LRGWWASGGSTLECSSISNKGTSGSGSNTNWVLFGDLTSQGLGLGDKADYFSAVVNVLMA 451
Query: 514 KCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLT 573
K +N Y +CP+ C KK+++ +G + C++C++ YR +L Q+ D++G +
Sbjct: 452 KQENCIYKSCPV----EDCKKKIIDLNNGVYRCEKCNREHNNFKYRMLLSAQVSDYSGSS 507
Query: 574 WVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQ 633
WVT F E A++++G+ A+ + K +D NDE + E + F ++ K + K E+++DE+
Sbjct: 508 WVTMFHEEAQKLLGVDAEIIG--KMMDNNDESYKEYFNDINFKQFQMKFRTKMESYNDEK 565
Query: 634 RVKSTVVKAERYNYSSETRFILD 656
R+K+TVV E +Y S R +L+
Sbjct: 566 RLKTTVVNLEPIDYKSYARRLLE 588
>gi|440797647|gb|ELR18729.1| replication factora protein 1 (rpa1) subfamily protein
[Acanthamoeba castellanii str. Neff]
Length = 646
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 182/681 (26%), Positives = 313/681 (45%), Gaps = 94/681 (13%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQV+ + + + R+R+ LSDG +LA+Q LV G L GS+V
Sbjct: 35 PVLQVVAHRAIQAVPSAGHPPPATRYRLTLSDGRHYMMALLASQLAHLVEGGTLATGSIV 94
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVII--------DKCDPIGKPVPAQRPSSNEQPGS---V 110
RL F + ++ ++++++L+++ D + I + A PS+ P S
Sbjct: 95 RLLDFAVTSVHDKRLIVILNLELVSPPRAIVNEDHLESIDQQSQASTPSAAPFPASPSYS 154
Query: 111 TGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQ 170
T +P N + ++ S LP PA + S F
Sbjct: 155 THSPSFNLSALA---------SALPK----TPAKSVFTFGAAASPPASTAPPPSSGFDLS 201
Query: 171 SASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMG 230
+ PR S +AS + TP P +Q+ + G+ I +A LNPY+
Sbjct: 202 PLAAVLPRTSGST-HASPFRSTP--PRLQASPKADDVGV---------ITSVADLNPYLS 249
Query: 231 KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKI 290
+WTI+ +VT+KG+++HY RG GK+ DL+D G EIR FN D+F ++ G +
Sbjct: 250 RWTIRVKVTSKGDVKHYQTARGPGKLLAIDLMDVAGTEIRAVMFNEAVDKFESIIQQGNV 309
Query: 291 YLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMEN 350
Y + + +LK A K F+H++ND EI + S+V+ + + P HF P++D+ +
Sbjct: 310 YSIEKATLKVANKKFSHINNDYEITISPASVVEAVAD---TFPGLVCHFAPLSDIREKKA 366
Query: 351 NSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGR--SVELTLWGNFCNDDGLRL 408
+ DL+ N + +KR+L L S R SVELTLWG
Sbjct: 367 D---DLL---------------NTIDLEKRSLAL---SSREVSVELTLWGQAAAS----- 400
Query: 409 QHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQS 468
+ +L +K+ +VS++ V + T+ ++P + + K TQ+
Sbjct: 401 ---FEGSAGDVLGLKSVKVSEWQETFV--LCATER-MKP------AMGYYPGKSLGATQA 448
Query: 469 VSISRDSLSVGR----ADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCD---NFCYT 521
S L R A+ KT+ +IK L ++ V+AT+ +IK D N Y
Sbjct: 449 SSYGSSRLFPARRKHKAEAVKTIQEIK--ALDVSGGSAFVVVNATVAFIKYDISGNTYYR 506
Query: 522 ACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQEC 581
+CP + C +KV++ G G + C+ C+ S C YRY++ ++ DHT W T F +
Sbjct: 507 SCP----NESCARKVVDVG-GSYRCEMCNASYDHCQYRYVMSVRLIDHTDSLWATVFNDV 561
Query: 582 AEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSD-EQRVKSTVV 640
++G+ A ++ + + EV+ K+ KL+V EE++ + ++R+++T++
Sbjct: 562 GATLLGVPASEVADICENRSDQRALEEVMNRGLLHKWRLKLRVAEESWGNFDKRIRATIM 621
Query: 641 KAERYNYSSETRFILDLMDKL 661
AE NY++ + + +L
Sbjct: 622 SAEPLNYAASASDVTSSISRL 642
>gi|84995782|ref|XP_952613.1| replication factor-a protein 1 [Theileria annulata strain Ankara]
gi|65302774|emb|CAI74881.1| replication factor-a protein 1, putative [Theileria annulata]
Length = 625
Score = 229 bits (584), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 162/529 (30%), Positives = 265/529 (50%), Gaps = 48/529 (9%)
Query: 129 TRVSQLPGDTDAVPAARH-VGSNLPPNYFKPEVGA-GSGSFSNQSASFSNPRPEFSRPYA 186
TR+S +PGD RH +G +P + P + +F N ++P R
Sbjct: 107 TRISVVPGD------YRHLIGHLVPALIYHPRLAVVQDDNFKNTMTDLNSPVSGPVRKQE 160
Query: 187 SN-YARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELR 245
+N +T PY P M GK +VP + I+ L Y KW I+ARV K E+R
Sbjct: 161 NNRTVKTISNPY--DPPMNK-----GKKDVP--LTKISDLTLYTPKWQIRARVVFKSEIR 211
Query: 246 HYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNF 305
+NNQRG+ ++F DL DS+G EIR F +++Y +E G++Y +S G LKPA K +
Sbjct: 212 KFNNQRGESQLFSVDLCDSNG-EIRAVFFGESVNKWYSFLEEGQVYSISGGQLKPANKRY 270
Query: 306 NHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISP 365
N+L + E+ LD +S +QL +++D SIP + F P++ ++ +++ +D+I +V
Sbjct: 271 NNLKHSCELILDESSYIQL-FQNDESIPSFCYSFTPLDQLQDIKSGETIDVIAIVVTARD 329
Query: 366 TASLMRK-NGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKA 424
+ K G +KR L D + +V +T WG +L + P++ +K
Sbjct: 330 LQKINNKATGNNVEKRDFLLCDSTNTTVWVTSWG-----QKTQLFNYEGDNSHPLVCLKG 384
Query: 425 GRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIR 484
+V ++ GK + +TQ+ EP PEA +L++W+ + G N ++ ++++
Sbjct: 385 VKVGEWQGKKLDVQISTQVICEPVIPEALKLRKWWNENGHN---INFKQETVKTNNNFFN 441
Query: 485 K--TVSQI---KDEGLGTKEKPD---WITVSATIVYIKCDNFCYTACPIMIGDRPCNKKV 536
K T+S I ++GL K T I +K NFC+ +C C KK
Sbjct: 442 KLCTISHIISSTNQGLQFKSIDSNGMVFTTRGLIEVLKDTNFCFPSC------TGCRKK- 494
Query: 537 MNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSL 596
M+N G W+C +C+ S + YIL +I D + W +A + E IMG+ A +L +L
Sbjct: 495 MSNDQGCWYCSKCNSSTNPI-HLYILNIKIVDESSHIWASAMADVGESIMGIKAYNLINL 553
Query: 597 KY---VDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKA 642
++N++ F +A T+Y+FK+K E F DE R+K V+KA
Sbjct: 554 MERGPSNENEKSFINYFEDARLTEYIFKIKATVENFMDEPRIKYRVLKA 602
>gi|145356040|ref|XP_001422250.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582490|gb|ABP00567.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 573
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 146/454 (32%), Positives = 245/454 (53%), Gaps = 29/454 (6%)
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
+P+AALNPY WT+K ++T KG +R Y + RG GKV D +D +G I T + +
Sbjct: 131 VPLAALNPYRTPWTVKVKLTNKGNVREYKSARGPGKVCSVDFVDEEGTAIGATLWREAIE 190
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ--- 336
++ +E GK+Y VS+GSLKPA K ++ ND E+ LD + +C + D S ++
Sbjct: 191 KYDSVLEVGKVYYVSKGSLKPADKRYSTSGNDYEMNLDGKCEIDVCNDIDQSSAQKMQRA 250
Query: 337 FHFRPINDVE---GMENNSVVDLIGVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSV 392
+ F PIN + G N ++ VV +S +S+ RK + TE KR + L D S ++V
Sbjct: 251 YAFVPINKLASKIGARGNVD--VVAVVKEVSELSSIRRKSDNTELNKREVVLVDDSAKTV 308
Query: 393 ELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEP-DFPE 451
LTLW + G +L M + P++A+++ RV D+ G +GT+S + + I+P D P
Sbjct: 309 RLTLWNALAVEVGEQLASMTN----PVVAIRSVRVGDYEGVSIGTVSRSDIVIDPEDVPR 364
Query: 452 AHRLKEWFEKEGKNTQSVSISRDSLSVGRAD----IRKTVSQIKDEGLG-TKEKPDWITV 506
A +K+W+ + G + ++ + S + + +++++ E + +KP + V
Sbjct: 365 AVEIKKWWSEGGSSAETTAAGEGLTSAQQGQKSEIMASNLAELQPEEIAPVTDKPTFAWV 424
Query: 507 SATIVYIKCD-NFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQ 565
A V K D YTA P + NKKV+ + DG+W+C+ Q+ C+ RYI++F+
Sbjct: 425 CAHTVMCKPDQTMYYTATP----EEGNNKKVIES-DGKWYCEANGQTYDTCERRYIMRFK 479
Query: 566 IQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQND-EKFGEVVRNATFTKYLFKLKV 624
QD + W+ AF E A ++ GM+A +++ LK +ND + V+ T + F +KV
Sbjct: 480 AQDSSEGAWLNAFNEEATKMFGMTANEMHELK---ENDFAAYERAVKKMTCQHWSFLVKV 536
Query: 625 KEETFSDEQRVKSTVVKAERYNYSSETRFILDLM 658
E + E + + T VK NY++E++ +L M
Sbjct: 537 VTEEYQGESKRRMTAVKCNPVNYAAESKKLLSKM 570
>gi|303290622|ref|XP_003064598.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454196|gb|EEH51503.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 541
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 139/454 (30%), Positives = 239/454 (52%), Gaps = 28/454 (6%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQF 281
IA+LNPY G WTIKA++ +KG +R + N RG+G+V +L+D +G I+ T + D++
Sbjct: 95 IASLNPYTGNWTIKAKLASKGAVRTFRNARGEGRVCTIELVDDNGTAIQATMWKDAIDKY 154
Query: 282 YHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYED--DASIPRQQFHF 339
+E GK+Y VSRGSL+PA + +++++ND E+ LD + C ED D S + +
Sbjct: 155 DAIMEVGKVYYVSRGSLRPANRQYSNVNNDYEMSLDGKCDISPC-EDPCDVSKMSRAYEL 213
Query: 340 RPINDV-EGMENNSVVDLIGVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVELTLW 397
I+ + + VD++ V+ + ++ RK + +E Q R + L D + ++V LTLW
Sbjct: 214 VAIDALPTKIGTRGSVDVLACVAAVGELRAIRRKSDDSEVQVRDITLLDDTKKTVSLTLW 273
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPD----FPEAH 453
G + G RL + + ++A++ RV+D+NG + T+ ++L +EP +A
Sbjct: 274 GELATEQGERLANE----IGAVVALRGLRVTDYNGVSLSTVQRSELIVEPSGDDIAAKAD 329
Query: 454 RLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKD------EGL--GTKEKPDWIT 505
L+ W+ EG ++ + + +Q D E L T + I
Sbjct: 330 ALRAWYAAEGSTAETTAAGAGLATARGGAGAGAPAQRVDLKAFQPELLPPATNKYEVGIL 389
Query: 506 VSATIVYIKCDN-FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQF 564
AT+V +K D Y ACP + NKKV+ G+W+C+ ++ C RYIL+
Sbjct: 390 GCATVVLVKPDQPMYYCACP----EEGNNKKVVEESPGKWYCEATQKTYDSCRRRYILRL 445
Query: 565 QIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKV 624
++ DH G WV F E A +++G A++L++L+ + N + V+ A F + KLK
Sbjct: 446 KVSDHAGGGWVNVFHEQACQMLGCDAEELHALR--ESNPAAYERKVKAAQFKPWGLKLKS 503
Query: 625 KEETFSDEQRVKSTVVKAERYNYSSETRFILDLM 658
K E + EQ+ + TV+ +Y++E + +L L+
Sbjct: 504 KTEEYQGEQKRRLTVLTCAPVDYAAEAKHLLSLI 537
>gi|344230770|gb|EGV62655.1| hypothetical protein CANTEDRAFT_115222 [Candida tenuis ATCC 10573]
Length = 376
Score = 223 bits (567), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 116/384 (30%), Positives = 216/384 (56%), Gaps = 14/384 (3%)
Query: 282 YHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRP 341
Y ++ GK+Y +S+ ++ A+ F+ L + E+ LD ++V+ C+ ++ ++P+ +F+F
Sbjct: 2 YETLQEGKVYYISKARIQAAKPQFSRLSHPYELSLDRDTIVEECFSNNGNVPKLKFNFTK 61
Query: 342 INDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWGNF 400
+N ++ E N+V+D++GV+ + P + K+ G +R + + D S S+ + LW
Sbjct: 62 LNQIQSAEPNTVIDVVGVLREVKPAFQITSKSTGKPFDRRDIDIVDDSNFSITVGLWNAT 121
Query: 401 CNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFE 460
D L G ++A K ++ DF G+ + T + PD PEA++LK W++
Sbjct: 122 AIDFNL------SEGT--VIAFKGCKIQDFGGRSLTLTQTGSILPNPDAPEAYQLKGWYD 173
Query: 461 KEGKNTQSVSISRDSL-SVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFC 519
+G N ++ D+ S RKT++Q+K+E LG +E+PD+ +V ATI + K + FC
Sbjct: 174 NQGSNETFQTLKADNAGSANYIKNRKTIAQVKEENLGAQEQPDFFSVKATINFFKTETFC 233
Query: 520 YTAC--PIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTA 577
Y AC + CN+K+++ GDG W C++CD + E YRYIL I D T W T
Sbjct: 234 YPACVNKQEASNNLCNRKIIDQGDGTWRCEKCDINYSEATYRYILNCSIMDATEQLWATL 293
Query: 578 FQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKS 637
F + A +I G+SA +L LK + N+ +F +VV T ++ F+LK ++++++ E R++
Sbjct: 294 FDQEASKIFGVSANELLVLK--ESNEAEFKKVVEAVTMKEFSFRLKARQDSYNGESRIRY 351
Query: 638 TVVKAERYNYSSETRFILDLMDKL 661
+ ++++E F++ ++ +
Sbjct: 352 QTMAVYDIDFAAECDFLVKELEAV 375
>gi|384246518|gb|EIE20008.1| hypothetical protein COCSUDRAFT_19010 [Coccomyxa subellipsoidea
C-169]
Length = 476
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 128/457 (28%), Positives = 245/457 (53%), Gaps = 27/457 (5%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PI ALNPY WTI+A++ +K LRH++ VF +++D G I +T + +A++
Sbjct: 34 PIHALNPYSNDWTIRAKLVSKAPLRHFDKAGQQQAVFGVEVVDDQGTTIEITLWRGLAEK 93
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
FY +E G++Y+ RG +K A KN+ + ND I +D S ++ C + D S + F
Sbjct: 94 FYDHLEEGRVYIFRRGQVKLANKNYKTVRNDYTIHMDNGSEIEQCEDSDVSKMTAKLKF- 152
Query: 341 PINDVEGME----NNSVVDLIGVVSYISPTASLMR-KNGTETQKRTLHLRDMSGRSVELT 395
D E + ++VD++G+ + + P S+ R ++GTE +R + L D ++V +T
Sbjct: 153 --VDFERLPMYAGKKTLVDVLGIATAVGPLGSVKRSRDGTELARRDVTLVDQGAKTVVVT 210
Query: 396 LWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRL 455
LWG+ + G +L+ D+ ++++ + RV+DFNG + T++ + + +EP+ A L
Sbjct: 211 LWGSTAEEVGAQLEQQPDA----LISISSCRVTDFNGVSLSTVTRSGVSVEPEGERADAL 266
Query: 456 KEWFEKEGKNTQSVSISRDSLSVGRAD----IRKTVSQI---KDEGLGTKEKPDWITVSA 508
+ W+E +G+ + + S RA +T +Q+ K+E KP + TV A
Sbjct: 267 RRWWESDGRTAPTQHLGEGLASAKRASGGAAELQTFAQLRVGKEELPPADAKPQYHTVIA 326
Query: 509 TIVYIKC-DNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQ 567
T+ I + Y ACP N+KV+ G+G W C+ Q+ + RY++
Sbjct: 327 TVANIDSQQSLYYEACP------DNNRKVVKQGEG-WFCEYDQQTYMAMVRRYVMLANCV 379
Query: 568 DHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEE 627
D +G ++ F E AE ++G+SA ++ +LK + N + V++ A +++++ +++ + +
Sbjct: 380 DASGDCLLSVFNEQAEALLGISADEIATLKEDETNPGPYEAVLKRAQWSEWVLRVQSRTQ 439
Query: 628 TFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSG 664
++ E R + +V + +Y E+R ++ +D+L++
Sbjct: 440 EYNGELRQRLSVASLKPVSYVEESRRMVQALDRLRAA 476
>gi|290999555|ref|XP_002682345.1| single-stranded DNA-binding replication protein A large subunit
[Naegleria gruberi]
gi|284095972|gb|EFC49601.1| single-stranded DNA-binding replication protein A large subunit
[Naegleria gruberi]
Length = 598
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 141/447 (31%), Positives = 236/447 (52%), Gaps = 29/447 (6%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PI+ LNPY W IKARVT K +++H++ G +F +LLD GG+IR T FN VA +
Sbjct: 167 PISNLNPYDKVWVIKARVTQKSDMKHWDKGTSKGSLFSIELLDEYGGQIRATFFNDVAKK 226
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
+Y ++ +Y S G LK A + F + + EI D +++Q D+ IP F+
Sbjct: 227 YYDAIKERSVYFFSGGKLKDANRKFTTIPHPYEITFDRDTVIQ--NARDSEIPTDTFNCT 284
Query: 341 PINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGR---SVELTLW 397
+ D+ +E+N ++D+ GVV I T KN +T++ + L D S +V+LT+W
Sbjct: 285 RLCDMTNVEDNMILDVAGVVQNIGETKEFTTKNNRKTKRCNISLIDDSSSPFCTVDLTIW 344
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKE 457
G+ C+ H G IL K+ R S++ G + TI++T++F +P P +L E
Sbjct: 345 GDMCD------THDMQQGDVVIL--KSVRKSNYGGVSLNTINSTRIFKDPGIPIYQQLSE 396
Query: 458 WFE-KEGK-NTQSVSISRDSLSVG--RADIRKTV-SQIKDEGLGTKEKPDWITVSATIVY 512
W++ EG + + + +++ +V R RK V + K+ + T PD++T+ A + Y
Sbjct: 397 WYQNNEGSFDGEGIKLTQKQAAVNSERTFKRKNVIADCKNMSVDTVTAPDYLTIRAYVSY 456
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
IK Y AC ++ CNKKV N +G +HC C+ S C +++ I D TG
Sbjct: 457 IK-HELWYDACT----NKECNKKVQQN-EGIYHCSSCNHSSDTCTRKFLANLGITDWTGK 510
Query: 573 TWVTAFQECAEEIMG-MSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSD 631
+ AF + E++ M+A D+ + E ++ TFT+Y+F ++V ET +
Sbjct: 511 QYCNAFNQAVEKLFSDMTADDMCARA---AEPEYMPYLLGEKTFTRYVFTVRVTTET-TK 566
Query: 632 EQRVKSTVVKAERYNYSSETRFILDLM 658
E ++K T+++ +Y+ E + IL L+
Sbjct: 567 EPKLKFTIIRVTPIDYAREAKSILSLI 593
>gi|302687831|ref|XP_003033595.1| hypothetical protein SCHCODRAFT_53289 [Schizophyllum commune H4-8]
gi|300107290|gb|EFI98692.1| hypothetical protein SCHCODRAFT_53289, partial [Schizophyllum
commune H4-8]
Length = 432
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 135/434 (31%), Positives = 227/434 (52%), Gaps = 21/434 (4%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQF 281
IA + Y WTIKARV K +R ++N RG G +F+ LDS GEIR T FN D+
Sbjct: 1 IATIALYNSNWTIKARVVTKSAIRTWSNNRGSGSLFNVTFLDS-TGEIRATGFNQAVDRL 59
Query: 282 YHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRP 341
Y ++ G+++ V++ ++ A++ F++++ND E+ L+ + ++ C DDA +P +F F
Sbjct: 60 YDVLQVGRVFFVTKARVELAKRKFSNVNNDYELHLEQNTSIEPCL-DDADVPVIKFDFVK 118
Query: 342 INDVEGMENNSVVDLIGVVSYISPTASLMRKNGTET-QKRTLHLRDMSGRSVELTLWGNF 400
I+ + E +S D+IGVV S + + K+ +KR L + D SG SV +TLWG
Sbjct: 119 IDQLLTTEKDSSCDVIGVVVDCSEVSEIATKSTNRAAKKRELTIADDSGYSVRVTLWGET 178
Query: 401 CNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFE 460
+ ++G +P++A K +V DF G+ + ++++ +++ D + L++WF+
Sbjct: 179 A-------EKYSEAG-YPVIAFKGVKVGDFGGRSLTMLTSSLMYVNLDHADTAELRDWFD 230
Query: 461 KEGKN---TQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDN 517
GK+ T S + S ++ +SQI+D G E +V A I+ IK
Sbjct: 231 NTGKHRDFTAHTSSTSSSHYSFDHGDQRDLSQIRDATRGMSETTSNYSVRAMIMDIKAKP 290
Query: 518 FCYTACPIMIGDRP-CNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVT 576
Y AC P C+KKV+ DGRW C++C+ S DYRY L I D TG
Sbjct: 291 LAYPACR-----SPGCSKKVVEISDGRWLCEKCNTSHSSPDYRYTLHILIGDATGTMLFQ 345
Query: 577 AFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVK 636
AF + + I+GMSA + +++ + N + + AT + F + + E + E R++
Sbjct: 346 AFDDVGKVILGMSANAVIAMREAN-NYQGTDNALSRATKRTWNFVCRTRNEAYDGEPRLR 404
Query: 637 STVVKAERYNYSSE 650
+ +AE ++ E
Sbjct: 405 YEITRAEPIDFLEE 418
>gi|429963164|gb|ELA42708.1| replication factor-a protein 1 (rpa1) [Vittaforma corneae ATCC
50505]
Length = 588
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 129/444 (29%), Positives = 237/444 (53%), Gaps = 35/444 (7%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I I + P+ + K RV +K E++ + Q+GDG+VF F++ D G+I+ F+
Sbjct: 177 ITDIKKIFPHKKTFKFKGRVVSKTEIKKFTTQKGDGQVFSFEIADC-TGQIKCVAFSECV 235
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D FY VE K Y++S ++KP+ K F++ +D EI L+ +++ EDD +IP+ F
Sbjct: 236 DTFYPLVENNKAYVISNVTVKPSNKKFSNNTSDFEIHLEKNTIITKV-EDD-NIPKYMFK 293
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASL-MRKNGTETQKRTLHLRDMSGRSVELTLW 397
F I D+ + VVD + V+ P + ++ G E+ KR L + D +G S LTLW
Sbjct: 294 FVKIADLASV--GGVVDCLAVIKEAYPVGKITIKSTGRESAKRDLMIIDQTG-SCRLTLW 350
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKE 457
G ++ + +C V +V D+NG + T+S +Q+ + PEA L
Sbjct: 351 GPKAEEEYEKDNIICLGSV---------KVGDYNGINLTTVSNSQVIQNIELPEAIELLA 401
Query: 458 WFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDN 517
W+E++G+N + I + R R +S++KD L ++ T+ ++VY+K +
Sbjct: 402 WYEEKGRN---IVIEKPK----RIPKRSFISEVKDNSL------EYATIQGSVVYLKEEG 448
Query: 518 FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTA 577
Y ACP CNKKV+ +G + C++C+ + +C+YRY++ + D TG W+T
Sbjct: 449 LFYEACP----SETCNKKVLMEDNGIFRCEKCNYTFEKCNYRYMINIHVGDFTGQMWITI 504
Query: 578 FQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKS 637
F E + ++G++A +L + + N E +++ + F+L+ KEE ++ + +++S
Sbjct: 505 FDEGGKSLLGVTAAELKEMG--ECNPENVHNLIKGIYSKELQFRLRNKEENYNGDIKLRS 562
Query: 638 TVVKAERYNYSSETRFILDLMDKL 661
+ ++ +Y ET+ +L+ ++K+
Sbjct: 563 SCLEISPVDYVFETKRMLEAIEKV 586
>gi|342185999|emb|CCC95484.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 464
Score = 215 bits (548), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 142/444 (31%), Positives = 229/444 (51%), Gaps = 36/444 (8%)
Query: 218 RIIPIAALNPYMG-KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
+I PI +L P++G KW I+ARVT K ++R +N GK+F F L+D + IR T FN
Sbjct: 8 QIQPIDSLTPFLGSKWWIRARVTDKSDVRTWNKPTSQGKLFSFTLID-ESASIRATVFND 66
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE-DDASIPRQ 335
D F + G++Y S G +K A + F++++ND E+ D +S + + + ASIP Q
Sbjct: 67 AVDLFNPLIVNGQVYFFSGGQVKNANRKFSNVNNDYELSFDSSSQISIARDASSASIPLQ 126
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVEL 394
+++F PI ++ E S+VD++ V+ + ++ +K+ G + KR + + D S ++++
Sbjct: 127 RYNFVPIEILKQREVGSLVDVLAVILGVDELTTITQKSTGRDLIKRNVKVSD-STAAIDV 185
Query: 395 TLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
TLW NDD + H + +LA++ +V F+G + T + P+ P+ +
Sbjct: 186 TLW----NDDAKQWMHQPGT----VLAIRQLKVGSFDGVTLSATLQTSFDVNPNIPDVKK 237
Query: 455 LKEWF-EKEGKNTQSVSISRDSLSVGRADI------RKTVSQIKDEGLGTKEKPDWITVS 507
L EWF G+ S+S G A+ K + EGLG +PD+I V
Sbjct: 238 LSEWFISTGGRGVASLSAQGTLAGAGAANSGEGYRGYKYFDDVAAEGLGRGPRPDYIDVR 297
Query: 508 ATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNG--DGRWHCDRCDQSVVECDYRYILQFQ 565
VY+K D Y ACP CNKKV G R+ C++CDQ+VV RYI+ Q
Sbjct: 298 CVPVYLKQDAQWYDACP------NCNKKVTLEGALGDRYRCEKCDQTVVPTQ-RYIVSIQ 350
Query: 566 IQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTK-YLFKLKV 624
+ D+ W+T F E + GM A + LK + D F V + L +L+V
Sbjct: 351 VTDNVSQVWLTLFNESGIDFFGMPASE---LKKRQEEDAMFVTKVAQMRMNRPVLMRLRV 407
Query: 625 KEETFS---DEQRVKSTVVKAERY 645
K+E ++ D++RV+ TVV+ +
Sbjct: 408 KDEPYTGGEDQERVRLTVVRMTEF 431
>gi|71756127|ref|XP_828978.1| replication factor A 51kDa subunit [Trypanosoma brucei TREU927]
gi|70834364|gb|EAN79866.1| replication factor A, 51kDa subunit, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261334907|emb|CBH17901.1| replication factor A, 51kDa subunit, putative [Trypanosoma brucei
gambiense DAL972]
Length = 463
Score = 215 bits (547), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 142/438 (32%), Positives = 230/438 (52%), Gaps = 37/438 (8%)
Query: 224 ALNPYMG-KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFY 282
+L+P++G KW I+ARVT K E+R +N GK+F F L+D + IR T FN D F
Sbjct: 14 SLSPFLGGKWWIRARVTDKSEIRTWNKPTSQGKLFSFTLID-ESASIRATVFNEAVDMFN 72
Query: 283 HQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE-DDASIPRQQFHFRP 341
+ G++Y S G +K A + F++++ND E+ D T + + +SIP Q+++F P
Sbjct: 73 PLIVNGQVYYFSGGQVKNANRKFSNVNNDYELSFDNTCQISAARDVVSSSIPLQRYNFVP 132
Query: 342 INDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWGNF 400
I ++ E S+VD++ VV + +++ R G E +RT+ + D S +++TLW
Sbjct: 133 IAILKQREVGSLVDVLAVVLNVEELGTIVQRSTGRELVRRTVKVAD-STAGIDVTLW--- 188
Query: 401 CNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFE 460
N++ H + +LA++ +V F+G + T + + P+ P+ +L+EWFE
Sbjct: 189 -NENAKEWPHQPGT----VLAMRQLKVGSFDGVTLSTTMQSSFDVNPNIPDVKKLREWFE 243
Query: 461 KE-GKNTQSVSISRDSLSVGRADIRKT------VSQIKDEGLGTKEKPDWITVSATIVYI 513
G++ S+S+ ++ ++G A +T + I EGLG KPD+I + VY+
Sbjct: 244 STGGRDVSSLSMQGNN-ALGLASSGETYRGYKYIDDITTEGLGKGPKPDYIDLRCVPVYL 302
Query: 514 KCDNFCYTACPIMIGDRPCNKKVMNNG--DGRWHCDRCDQSVVECDYRYILQFQIQDHTG 571
K D Y ACP CNKKVM G R+ C++CDQS+V RY++ Q+ D+
Sbjct: 303 KQDTQWYDACP------QCNKKVMLEGAMGDRFRCEKCDQSIVPTQ-RYLVSIQVTDNVS 355
Query: 572 LTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTK-YLFKLKVKEETF- 629
W+T F E E GM+A + LK + D F V + L +L+VKEE
Sbjct: 356 QVWLTLFNESGAEFFGMTAPE---LKRRQEEDPMFVTKVAQMRMNRPVLMRLRVKEEGLG 412
Query: 630 --SDEQRVKSTVVKAERY 645
D +RV+ VV+ +
Sbjct: 413 GNEDSERVRLNVVRITEF 430
>gi|326484265|gb|EGE08275.1| replication factor A 1 [Trichophyton equinum CBS 127.97]
Length = 538
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 115/360 (31%), Positives = 204/360 (56%), Gaps = 20/360 (5%)
Query: 295 RGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVV 354
+ LK A+K F++++ND E+ D ++V+ ED +P+ +F+F + +++ ++ + +
Sbjct: 182 KARLKMAKKEFSNVNNDYELTFDRDTVVEKA-EDQNDVPQIRFNFTSLGNLQSIDKGTTI 240
Query: 355 DLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCD 413
D++G++ + T+ + K G KR L L D SG SV LT+WGN + D
Sbjct: 241 DVLGILKDVDATSQVTSKTTGKPYDKRELTLVDNSGFSVRLTVWGNTATN--------FD 292
Query: 414 SGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISR 473
+ ++A K +VSDF G+ + +S+ + ++PD EAHRLK W++ +GK+ + S
Sbjct: 293 TPPESVVAFKGVKVSDFGGRTLSLLSSGTVTVDPDIEEAHRLKGWYDAQGKSNSFTAYSS 352
Query: 474 DSLSVGRAD--IRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRP 531
D+ G KT+S+I+DE + + + + ++ AT++++K DN CY ACP +
Sbjct: 353 DTTGGGGGSWPTFKTISEIRDEEIPSADSFESFSLKATVIHVK-DNLCYPACP----NEA 407
Query: 532 CNKKVMNNGD-GRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSA 590
C K + GD +WHC+RC++S YRYIL DHTG W++ F E + I GM+A
Sbjct: 408 CKNKKVTRGDLDQWHCERCERSYANPKYRYILSLNACDHTGQIWLSCFDEAGQMIFGMTA 467
Query: 591 KDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSE 650
+L +K + +D E+ + AT+ + FK + K +T+ ++QR + V+ A +Y++E
Sbjct: 468 DELMKIK--EDDDAAANEITKGATYCTWNFKCRAKLDTYQEQQRTRYNVIAATPIDYATE 525
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 72/128 (56%), Gaps = 10/128 (7%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P+LQ + +K VV ++Q R+ +V SD + + ML TQ N VT G+L+ GS V
Sbjct: 24 PILQCLRIKPVVVREQD-------RYGVVFSDVNHFVRTMLPTQLNSYVTDGILRRGSFV 76
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVI--IDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
RLT F +V++ + ++I+M L+V+ + + + IG P P + P S ++ G + SN
Sbjct: 77 RLTNFQVSVVKGKHLLIIMGLEVLSALGEAERIGDPKPLE-PKSGDEMGGQSTTLSSNEF 135
Query: 120 GVSLQHHN 127
+ Q HN
Sbjct: 136 YNAPQTHN 143
>gi|424513270|emb|CCO66854.1| predicted protein [Bathycoccus prasinos]
Length = 587
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 171/607 (28%), Positives = 293/607 (48%), Gaps = 86/607 (14%)
Query: 107 PGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAG--- 163
PG+V +S L+ N +V G DA + G+N F ++ A
Sbjct: 8 PGAVARIRESKEV---LKDELNVQVLDFDGSNDAFRGVLNDGTNKLKCTFAKDLFAKENN 64
Query: 164 ----SGS--------FSNQSA-----SF--SNPRPEFSRPYASNYARTPQAPYMQSPSMY 204
SG+ F N A SF N PEF P A+ +T P +
Sbjct: 65 KMVKSGAVVKLTDVVFENSEALVREFSFVDENASPEFKTPGATGGGKT-------VPGVV 117
Query: 205 ANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDS 264
+R R PIA+LNPY +WTIKA++ KG R Y N +G+GKV +L+DS
Sbjct: 118 NSR----------RSQPIASLNPYQPQWTIKAKLAVKGNTRTYRNAKGEGKVLTVELVDS 167
Query: 265 DGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQL 324
+G I+ T + +++ + +E GK+Y VS+GSL+PA + + ++ND E+ LD S +
Sbjct: 168 EGTAIQATLWREAVERYENVLEVGKLYYVSKGSLRPANRQYTTVNNDYEMSLDGKSEIVE 227
Query: 325 CYEDD------ASIPRQQFHFRPINDVEGMENN--SVVDLIGVVSYISPTASLMRK-NGT 375
E++ I + F F I D+ N+ + D+ VV ++ +++ RK + +
Sbjct: 228 ASEEEQLESAAKKIFEKAFEFVSIGDLAKRVNSKRATCDVCAVVKSVADLSAVKRKSDNS 287
Query: 376 ETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVV 435
E QKR L L D S +V+LTLW + G +L+ M + P++ V++ RV+++ G +
Sbjct: 288 EIQKRELTLCDESSSTVQLTLWNALATEQGEKLKEMTN----PVIIVRSVRVTEYEGVSL 343
Query: 436 GTISTTQLFI------------EPDFPE-AHRLKEWFEKEGKN-TQSVSISRDSLSVGRA 481
GT+ +++ I E + PE A +WF++ G+N T + LSV +
Sbjct: 344 GTLGKSEMQIFELDEAAKASVEEGEVPEKAIETAKWFKENGENATFKTAAEGAGLSVQQR 403
Query: 482 D------IRKTVSQIKDEGL-GTKEKPDWITV-SATIVYIKCDNFCYTACPIMIGDRPCN 533
R+T+ + E + +KP V A+I+ I+ Y A P + N
Sbjct: 404 GGKLAPLERQTLVDFQPEEIPSASDKPKMCIVPRASILTIREGTMWYCATP----EEGNN 459
Query: 534 KKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDL 593
KV +G+W+C + ++ C RYI+ +I D +G W+T F + E++ G +A ++
Sbjct: 460 AKVEEE-NGQWYCAKNQKTYATCKRRYIMGAKIADESGSCWLTLFNDDGEKLFGHTADEM 518
Query: 594 YSLKYVDQNDEKFGEVVRNATFTK--YLFKLKVKEETFSDEQRVKSTVVKAERYNYSSET 651
+ ++ + + +K+ ++R A K + FKLK K E +++E R K + ++++E+
Sbjct: 519 H--EFQENDSDKYDAILRAAQGAKKSFTFKLKSKVEEYNNENRRKVLTMSMNPIDFAAES 576
Query: 652 RFILDLM 658
R +L M
Sbjct: 577 RSLLSKM 583
>gi|71030044|ref|XP_764664.1| replication factor A protein [Theileria parva strain Muguga]
gi|68351620|gb|EAN32381.1| replication factor A protein, putative [Theileria parva]
Length = 458
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 142/437 (32%), Positives = 225/437 (51%), Gaps = 39/437 (8%)
Query: 212 KSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRV 271
K +VP + I+ L Y KW+I+ARV K E+R +NNQRG+ ++F DL DS+G EIR
Sbjct: 36 KKDVP--LTKISDLTLYTPKWSIRARVVFKSEIRKFNNQRGESQLFSVDLCDSNG-EIRA 92
Query: 272 TCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDAS 331
F +++Y +E G++Y +S G LKPA K FN+L + E+ LD +S +QL +++D S
Sbjct: 93 VFFGESVNKWYSFLEEGQVYSISGGQLKPANKRFNNLKHTCELILDESSHIQL-FQNDES 151
Query: 332 IPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGR 390
IP + F P++ ++ +++ +D+I +V + K+ G +KR L D +
Sbjct: 152 IPSFCYSFTPLDQLQDVKSGETIDVIAIVVTAKDVQKINNKSTGNNVEKRDFLLCDSTNT 211
Query: 391 SVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFP 450
+V +T WG +L + P+ V ++ GK + +TQ+ EP P
Sbjct: 212 TVWVTSWG-----QKTQLFNYQGENSHPL-------VGEWQGKKLDVQGSTQVICEPVIP 259
Query: 451 EAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRK--TVSQI---KDEGLGTKEKPD--- 502
EA +L++W+ +N+Q+V+ ++ + K T+S I ++GL K
Sbjct: 260 EALKLRKWW---NENSQNVNFQQEVSKTTNSTFNKLCTISHIISSTNQGLQFKSIDSNGM 316
Query: 503 WITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYIL 562
T A I +K NFC+ +C C KK M N G W+C +C+ S + YIL
Sbjct: 317 VFTTRALIEVLKDTNFCFPSC------TGCRKK-MTNDQGIWYCPKCNSSTNPV-HLYIL 368
Query: 563 QFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKY---VDQNDEKFGEVVRNATFTKYL 619
+I D T W TA + E IMG+ A L L D+N++ F +A T+Y+
Sbjct: 369 NIKIVDETSHIWATAMSDVGESIMGIKAYKLIKLMENGPSDENEKNFVNYFEDARLTEYI 428
Query: 620 FKLKVKEETFSDEQRVK 636
FK+K E F DE R+K
Sbjct: 429 FKIKATVENFMDEPRIK 445
>gi|238502014|ref|XP_002382241.1| replication protein A 70 kDa DNA-binding subunit [Aspergillus
flavus NRRL3357]
gi|220692478|gb|EED48825.1| replication protein A 70 kDa DNA-binding subunit [Aspergillus
flavus NRRL3357]
Length = 375
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 124/385 (32%), Positives = 217/385 (56%), Gaps = 22/385 (5%)
Query: 281 FYHQVEAGKIYLVSR-GSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
Y + G +Y +S +K A+K F +L+ND E+ + ++V+ ED A +P+ +F F
Sbjct: 2 LYDVFQEGSVYYISSPCGVKLAKKQFTNLNNDYELTFERDTVVEKA-EDQADVPQIRFSF 60
Query: 340 RPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVELTLWG 398
I D++ +E ++ +D+IGV+ ++ + +M K + KR L L D +G SV LT+WG
Sbjct: 61 TTIGDLQSVEKDTTIDVIGVLKEVAEVSQIMSKTTNKPYNKRELTLVDSTGFSVRLTVWG 120
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEW 458
+ L +S ++A K +VSDF G+ + +S+ + ++PD EAH+LK W
Sbjct: 121 S----TALNFNVTPES----VIAFKGVKVSDFGGRSLSLLSSGSMTVDPDIEEAHKLKGW 172
Query: 459 FEKEGKN---TQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKC 515
++ +G++ S+ + S + + KTV+Q+K+E LG ++ + ++ AT++YIK
Sbjct: 173 YDAQGRDGVFASHASMPGVAASTTKLEQFKTVAQVKEEQLGMSDEVAYFSLKATVIYIKQ 232
Query: 516 DNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWV 575
D CY AC CNKKV G+W C+RCD++ +YRYI+ + DHTG ++
Sbjct: 233 DTMCYPACL----SEGCNKKVTELDPGQWRCERCDKTHPRPEYRYIMLISVSDHTGQLYL 288
Query: 576 TAFQECAEEIMGMSAKDLYSLKYVDQNDEK-FGEVVRNATFTKYLFKLKVKEETFSDEQR 634
+ F E +MG SA L ++ QND+K G++ ++A + F+ + K + F D+QR
Sbjct: 289 SCFDEVGRYMMGTSADQLMEIR---QNDDKAAGDIFQDANCRTWNFRCRAKIDNFGDQQR 345
Query: 635 VKSTVVKAERYNYSSETRFILDLMD 659
++ +V A+ NYS E + +++D
Sbjct: 346 IRCQIVTAKPVNYSEEALRLANMID 370
>gi|13096131|pdb|1FGU|A Chain A, Ssdna-Binding Domain Of The Large Subunit Of Replication
Protein A
gi|13096132|pdb|1FGU|B Chain B, Ssdna-Binding Domain Of The Large Subunit Of Replication
Protein A
Length = 252
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 109/258 (42%), Positives = 157/258 (60%), Gaps = 13/258 (5%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
S+++PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D + GEIR T FN
Sbjct: 2 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNE 60
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
D+F+ +E K+Y S+G+LK A K F + ND E+ + + V C EDD +P Q
Sbjct: 61 QVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC-EDDHHLPTVQ 119
Query: 337 FHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F I+D+E +S+VD+IG+ SY T +R N E KR ++L D SG+ V T
Sbjct: 120 FDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTAT 179
Query: 396 LWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
LWG + DG R P+LA+K RVSDF G+ + +S++ + PD PEA++
Sbjct: 180 LWGEDADKFDGSRQ---------PVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYK 230
Query: 455 LKEWFEKEGKNTQSVSIS 472
L+ WF+ EG+ VSIS
Sbjct: 231 LRGWFDAEGQALDGVSIS 248
>gi|402471519|gb|EJW05236.1| replication factor-a protein 1 (rpa1) [Edhazardia aedis USNM 41457]
Length = 759
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 136/443 (30%), Positives = 233/443 (52%), Gaps = 43/443 (9%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PIA++NP+ KW+IK R T K +++ + N RG+GK+F ++ D + G I+++ F+ D
Sbjct: 355 PIASINPFQNKWSIKGRCTYKSDIKKFTNARGEGKLFTVNISD-ETGTIKISAFSECVDM 413
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
F+ E GK +++++G +K A K ++ +D EI+LD S V +++ A PR F+F
Sbjct: 414 FFTIFENGKSFIITKGQVKMANKKYSTGTSDYEIYLDKNSEVTPIFDEGA--PRYFFNFV 471
Query: 341 PINDVEGMENNSV--VDLIGVVSYISPTASL-MRKNGTETQKRTLHLRDMSGRSVELTLW 397
IND+ N S+ D+IGVV PT+++ +R G E +KR + D +G ++ LTLW
Sbjct: 472 KINDL----NISLHQADVIGVVKEAYPTSTITLRNTGKEQKKRDFVIIDETG-NIRLTLW 526
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKE 457
G+ + L L+ V ++A + ++NG V+ IS TQ+ I PD E LK
Sbjct: 527 GSGAD---LPLE------VGDVIACNCLSIREYNGIVLSQISPTQVHINPDLEECFLLKG 577
Query: 458 WFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDN 517
W+E EGKN + + ++ R +S I + + W + T++ I ++
Sbjct: 578 WYENEGKNIK--------VHKKASEQRYLISDIIENEMK------WGSFIGTVLQINENS 623
Query: 518 FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTA 577
Y AC C KKV++ G+ + C++C+++ +C +Y + QI D T
Sbjct: 624 LYYQACI------ECKKKVIDEGEDVYRCEKCNKTFDQCIPKYTINLQIADFTSSIRAMV 677
Query: 578 FQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKS 637
F + G+SAK L L Q + +++N+ ++FK +++E++ E R K
Sbjct: 678 FDAQGDIFFGISAKHLVDL---GQKSSQIDLIIKNSYLRDFIFKTSMRQESYQGETRNKY 734
Query: 638 TVVKAERYNYSSETRFILDLMDK 660
V E NY SE++ +LD + K
Sbjct: 735 NVSSLEECNYISESKILLDEIRK 757
>gi|313234321|emb|CBY10388.1| unnamed protein product [Oikopleura dioica]
Length = 589
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 141/505 (27%), Positives = 241/505 (47%), Gaps = 40/505 (7%)
Query: 166 SFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAAL 225
+F + S S P+ + + P A+ AR + Q+ R + + L
Sbjct: 112 AFEKPAKSVSAPKKKVAVPGATGVARGKENAKPQTAD--------------GRYMSVMTL 157
Query: 226 NPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQV 285
PYM KW IKARV KG L+ Y N +G GK+F F +D ++++ FN D+F++ V
Sbjct: 158 TPYMNKWCIKARVVQKGPLKEYQNAKGAGKLFAF-TVDDGTCNLKISAFNDEVDKFFNIV 216
Query: 286 EAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDV 345
E GK+ +S G LKP +N ++D E L + ++ +D IP+ F+F PI+ +
Sbjct: 217 EKGKVVTISNGQLKPKNAQYNSTNHDYECTLGRMTTIEEVMDDCDDIPQMTFNFEPISKI 276
Query: 346 -EGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRS-VELTLWGNFCND 403
+ VD+ V++ + ++ + G + +KR L + D S + + TLWG
Sbjct: 277 ISDRAKGAFVDVCAVINEVGAIDTINTRAGKQLEKRDLEIVDDSTKEKMRCTLWG----- 331
Query: 404 DGLRLQHMCD--SGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAH--RLKEWF 459
Q D + ++AVKA V +F GK + +++ + DF E H +L W+
Sbjct: 332 -----QQAVDFSASRGQVMAVKAASVGEFQGKTLSVGRDSEIIL--DFAEDHGQKLNVWW 384
Query: 460 EKEGKNTQ-SVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNF 518
+EG++ S R ++ S ++ T +KP W + YIK +
Sbjct: 385 TQEGQDAAFEGQSGAGSSGGKRNEMVLLDSIMQGANYQTDDKPYWFNSKCYLTYIKKERM 444
Query: 519 CYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAF 578
Y CP D+ CNKK++ DG + C++C+Q+ +YR ++Q + D G + T F
Sbjct: 445 MYKGCPGK-DDQKCNKKLIEEDDGMYRCEKCNQNFQNFNYRIMMQAAVTDGRGQQYCTFF 503
Query: 579 QECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKST 638
E AE+I+G A +L + D N+ F + + + +++ + K E + DEQR+K
Sbjct: 504 GETAEQILGKPADELGEMFNSDGNE--FDDFINTKSCLEFILGGRAKCEIYQDEQRLK-- 559
Query: 639 VVKAERYNYSSETRFILDLMDKLKS 663
V A+R ++ LDL +L+
Sbjct: 560 -VAAQRVAQIDFNKYGLDLASRLQE 583
>gi|66363290|ref|XP_628611.1| Rf-A (OB fold protein) [Cryptosporidium parvum Iowa II]
gi|46229828|gb|EAK90646.1| Rf-A (OB fold protein) [Cryptosporidium parvum Iowa II]
Length = 707
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 182/699 (26%), Positives = 307/699 (43%), Gaps = 122/699 (17%)
Query: 55 LQIGSVVRLTKFTCNVIQNRMIVIVMDLDVI--------IDKCDPI----------GKPV 96
LQ G ++++T+F+ N I + +V V+ D + I K P G P
Sbjct: 39 LQPGDMIKITRFSLNEIHSTKLVTVVQYDKVGHWSGFTSIGKATPHPCMGSSKAAGGGPG 98
Query: 97 PAQRPSSNEQPGSVTGNPQSN----ATGVSLQHHNNTRVS----QLPGDTDAVPAARHVG 148
++P+ Q G+ +G P S+ + VS+Q Q G + P+ + G
Sbjct: 99 DQKQPAVQNQMGASSGTPNSSHSTEPSSVSMQQQQQQHNIQMQPQQVGYRASGPSEQMPG 158
Query: 149 SNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYANRG 208
S P + +G GS + N R+ S +
Sbjct: 159 SAGPISGRDGMQSSGPGSMN-----------------MGNTMRSGPYGGGGMGSGQSKGP 201
Query: 209 LVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQR-GDGKVFHFDLLDSDGG 267
+ E+P + PI + Y+ +W I RV +K ++R +++ + +GKVF F++ D+DG
Sbjct: 202 VSRNQEIP--VYPIKNITSYLHRWRIVGRVVSKSDIRKFSSSKTKEGKVFSFEICDADGS 259
Query: 268 EIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE 327
EIR TCF D+FY ++ G++Y SRG +K A FN ++ EI + + +Q +
Sbjct: 260 EIRATCFTKAVDKFYDMLKEGEVYSFSRGDVKEANTRFNTTGHEFEIIFNEDAEIQSLPQ 319
Query: 328 DDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASL-MRKNGTETQKRTLHLRD 386
DD IP++ F+F PI+++ G +DL+G++ P ++ ++ G +TQKR L + D
Sbjct: 320 DD-RIPKKTFNFVPISEIRGYSKGQSLDLLGILLKAGPITTITVKSTGADTQKRELTIID 378
Query: 387 MSGRSVELTLWGNFCN-DDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFI 445
SG S++LTLW + D+GL Q+ P++AVK V +FNG + S++ +
Sbjct: 379 KSGHSIDLTLWSERTHLDEGLISQN-------PVIAVKNAIVEEFNGFRLKLGSSSSIEW 431
Query: 446 EPD-FPEAHRLKEWFEKE-----------------GKNTQSVSISRDSLS--VGRADIRK 485
P ++ LK WF + G S S R S+ V A
Sbjct: 432 NPSGVEQSQELKNWFFSQSNLHESVVSLSSSSPSPGNTNSSSSAKRLSIDEIVATATSGS 491
Query: 486 TVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGD---- 541
+ S + D G+ W+ TI I+ + + +++CP C +KV D
Sbjct: 492 SSSDMLDGGI-------WVHTYGTIRSIRDNKYYWSSCP------KCKRKVTEIEDPNSI 538
Query: 542 ------------------GRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAE 583
+HC C QS+ +YIL +I D TG AF E E
Sbjct: 539 NALVLPYGSEKETSTSLGPNYHCPSCQQSIENPIKKYILSCEIVDSTGTIRAVAFAEHGE 598
Query: 584 EIM-GMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKA 642
IM G+S + L SLK + D+ + + F++++FKL K+E + D + +K + A
Sbjct: 599 TIMDGLSPEKLESLK--ENTDKNTEDCFSDKLFSEWVFKLNGKKELYQDSEIIKYRIFSA 656
Query: 643 E--------RYNYSSETRFILDLMDKLKSGDSTSFALKA 673
E + +I D ++ +K +++S A A
Sbjct: 657 EDMTNPEILNREAKRKLEYIYDKLNNIKETNTSSNAYSA 695
>gi|58372552|gb|AAW71479.1| replication protein A large subunit [Cryptosporidium parvum]
Length = 688
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 182/699 (26%), Positives = 306/699 (43%), Gaps = 122/699 (17%)
Query: 55 LQIGSVVRLTKFTCNVIQNRMIVIVMDLDVI--------IDKCDPI----------GKPV 96
LQ G ++++T+F+ N I + +V V+ D + I K P G P
Sbjct: 20 LQPGDMIKITRFSLNEIHSTKLVTVVQYDKVGHWSGFTSIGKATPHPCMGSSKAAGGGPG 79
Query: 97 PAQRPSSNEQPGSVTGNPQSN----ATGVSLQHHNNTRVS----QLPGDTDAVPAARHVG 148
++P+ Q G+ +G P S+ + VS+Q Q G + P+ + G
Sbjct: 80 DQKQPAVQNQMGASSGTPNSSHSTEPSSVSMQQQQQQHNIQMQPQQVGYRASGPSEQMPG 139
Query: 149 SNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYANRG 208
S P + +G GS + N R+ S +
Sbjct: 140 SAGPISGRDGMQSSGPGSMN-----------------MGNTMRSGPYGGGGMGSGQSKGP 182
Query: 209 LVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQR-GDGKVFHFDLLDSDGG 267
+ E+P + PI + Y+ +W I RV +K ++R +++ + +GKVF F++ D+DG
Sbjct: 183 VSRNQEIP--VYPIKNITSYLHRWRIVGRVVSKSDIRKFSSSKTKEGKVFSFEICDADGS 240
Query: 268 EIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE 327
EIR TCF D+FY ++ G++Y SRG +K A FN ++ EI + +Q +
Sbjct: 241 EIRATCFTKAVDKFYDMLKEGEVYSFSRGDVKEANTRFNTTGHEFEIIFHEDAEIQSLPQ 300
Query: 328 DDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASL-MRKNGTETQKRTLHLRD 386
DD IP++ F+F PI+++ G +DL+G++ P ++ ++ G +TQKR L + D
Sbjct: 301 DD-RIPKKTFNFVPISEIRGYSKGQSLDLLGILLKAGPITTITVKSTGADTQKRELTIID 359
Query: 387 MSGRSVELTLWGNFCN-DDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFI 445
SG S++LTLW + D+GL Q+ P++AVK V +FNG + S++ +
Sbjct: 360 KSGHSIDLTLWSERTHLDEGLISQN-------PVIAVKNAIVEEFNGFRLKLGSSSSIEW 412
Query: 446 EPD-FPEAHRLKEWFEKE-----------------GKNTQSVSISRDSLS--VGRADIRK 485
P ++ LK WF + G S S R S+ V A
Sbjct: 413 NPSGVEQSQELKNWFFSQSNLHESVVSLSSSSPSPGNTNSSSSAKRLSIDEIVATATSGS 472
Query: 486 TVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGD---- 541
+ S + D G+ W+ TI I+ + + +++CP C +KV D
Sbjct: 473 SSSDMLDGGI-------WVHTYGTIRSIRDNKYYWSSCP------KCKRKVTEIEDPNSI 519
Query: 542 ------------------GRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAE 583
+HC C QS+ +YIL +I D TG AF E E
Sbjct: 520 NALVLPYGSEKETSTSLGPNYHCPSCQQSIENPIKKYILSCEIVDSTGTIRAVAFAEHGE 579
Query: 584 EIM-GMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKA 642
IM G+S + L SLK + D+ + + F++++FKL K+E + D + +K + A
Sbjct: 580 TIMDGLSPEKLESLK--ENTDKNTEDCFSDKLFSEWVFKLNGKKELYQDSEIIKYRIFSA 637
Query: 643 E--------RYNYSSETRFILDLMDKLKSGDSTSFALKA 673
E + +I D ++ +K +++S A A
Sbjct: 638 EDMTNPEILNREAKRKLEYIYDKLNNIKETNTSSNAYSA 676
>gi|195108851|ref|XP_001999006.1| GI24277 [Drosophila mojavensis]
gi|193915600|gb|EDW14467.1| GI24277 [Drosophila mojavensis]
Length = 557
Score = 209 bits (532), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 133/454 (29%), Positives = 235/454 (51%), Gaps = 35/454 (7%)
Query: 213 SEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVT 272
+++ +IPIA L+PY KW IKARV+ K + Y G++F+ +L D GEIRVT
Sbjct: 130 NQINEEVIPIAHLSPYKHKWIIKARVSGKTRIFSYKG----GRLFNMNLFDK-SGEIRVT 184
Query: 273 CFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASI 332
F D+F+ ++ G +Y ++ G +KPA ++ L N+ E+ +MVQLC +D+ I
Sbjct: 185 AFKDQCDKFHSLIDDGNVYFIANGWIKPANTQYSQLKNEFEMIFIGETMVQLC-DDNGDI 243
Query: 333 PRQQFHFRPINDVEGMENNSVVDLIGVVSYISPT-ASLMRKNGTETQKRTLHLRDMSGRS 391
P +F P++ V M N V+ IG+ + + + K E +KR L L DMS +
Sbjct: 244 PEVKFDLIPLSHVSNMGNKEAVNTIGICTEVGKLDIRISTKTNKEFKKRELTLVDMSNAA 303
Query: 392 VELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDF-NGKVVGTISTTQLFIEPDFP 450
V LTLWG D+ + D V ++ VK RV+++ + K + + L I PD P
Sbjct: 304 VTLTLWG----DEAVNF----DGHVQSVILVKGSRVNEYGDWKSLNVGWGSTLKINPDIP 355
Query: 451 EAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATI 510
EAH+L+ WF+ G D++ R T+ LG+ ++PD+ A +
Sbjct: 356 EAHKLRVWFDNGGA---------DNIVSARRVELMTLKDAYFRNLGSGDRPDYFQCIAIV 406
Query: 511 VYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQ--D 568
+ N Y ACP M CNKKV++ GDG + C+ CD V +++YIL+ +I+ D
Sbjct: 407 QNVIQTNAFYKACPQM----NCNKKVVDVGDGLYRCESCD--AVSPNFKYILRVKIKISD 460
Query: 569 HTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEET 628
+T V F + E+++ + +++ ++ ++ + + ++ + +T Y+FKL K +
Sbjct: 461 YTSDREVICFGKIGEQLLRHTTQEV--VEALENDPARALQIFTDINYTLYIFKLSCKNKL 518
Query: 629 FSDEQRVKSTVVKAERYNYSSETRFILDLMDKLK 662
++ + TV +N + +++ +++++
Sbjct: 519 YNGKMISTLTVQSMTPFNCKKYNKHLINEINQMR 552
>gi|114145419|ref|NP_001041308.1| replication protein A 70 kDa DNA-binding subunit [Rattus
norvegicus]
gi|33086646|gb|AAP92635.1| Cb1-727 [Rattus norvegicus]
Length = 680
Score = 209 bits (531), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 153/463 (33%), Positives = 232/463 (50%), Gaps = 77/463 (16%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
PVLQV++++ + + + R+R+++SDG + MLATQ N LV G L V
Sbjct: 10 PVLQVINIRPITTG------NSPPRYRLLMSDGLNTLSSFMLATQLNALVEGGQLASNCV 63
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
++ +F N +++ R +VI+MDL+V+ S + G GNP
Sbjct: 64 CQVHRFIVNTLKDGRRVVILMDLEVV----------------KSAGEVGVKIGNPVPYNE 107
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGS-GSFSNQSASFSNPR 178
G + Q A S P KP+ GS G S + ++ +
Sbjct: 108 GHAQQQ-----------------AVSAPASAATPPASKPQPQNGSLGVGSTVAKAYGASK 150
Query: 179 PEFSRPYASNYARTPQAPYMQSPSMYANRGLVG-KSEVPSRIIPIAALNPYMGKWTIKAR 237
P F +P A GL+ S S+++PIA+L PY KWTI AR
Sbjct: 151 P-FGKP--------------------AGTGLLQPTSGTQSKVVPIASLTPYQSKWTICAR 189
Query: 238 VTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGS 297
VT K ++R ++N RG+GK+F +L+D + GEIR T FN D+F+ +E K+Y S+G+
Sbjct: 190 VTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGT 248
Query: 298 LKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLI 357
LK A K F+ + ND E+ + + V C ED +P QF F I D+E +S+VD+I
Sbjct: 249 LKIANKQFSAVKNDYEMTFNNETSVLPC-EDGHHLPTVQFDFTGIGDLESKSKDSLVDII 307
Query: 358 GVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCND-DGLRLQHMCDSG 415
G+ SY T ++ N E KR + L DMSG+ V TLWG + DG R
Sbjct: 308 GICKSYEDATKITVKSNNREVAKRNICLMDMSGKVVTATLWGEDADKFDGSRQ------- 360
Query: 416 VFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEW 458
P++A+K RVSDF G+ + +S++ + + PD PEA++L+ W
Sbjct: 361 --PVMAIKGARVSDFGGRSLSVLSSSTVLVNPDIPEAYKLRGW 401
Score = 133 bits (334), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 117/208 (56%), Gaps = 13/208 (6%)
Query: 459 FEKEGKNTQSVSIS--RDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCD 516
F+ EG+ VSIS R + G KT+ + K E LG +K D+ + AT+V+++ +
Sbjct: 473 FDSEGQALDGVSISDLRSGGTGGSNTNWKTLYEAKSENLGQGDKADYFSTVATVVFLRKE 532
Query: 517 NFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVT 576
N Y ACP + CNKKV++ +G + C++CD+ YR IL I D WVT
Sbjct: 533 NCMYQACPT----QDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSVNIADFQENQWVT 588
Query: 577 AFQECAEEIMGMSAKDLYSLK------YVDQNDEKFGEVVRNATFTKYLFKLKVKEETFS 630
FQE AE I+G + L LK +V N++ F EV +NA F + F+++VK ET++
Sbjct: 589 CFQESAEAILGQNTVYLGELKEKVGCVFVSMNEQAFEEVFQNANFRSFTFRIRVKLETYN 648
Query: 631 DEQRVKSTVVKAERYNYSSET-RFILDL 657
DE R+K+TV+ + +Y + R I+++
Sbjct: 649 DESRIKATVIDVKPVDYRDYSKRLIMNI 676
>gi|2624702|pdb|1JMC|A Chain A, Single Stranded Dna-Binding Domain Of Human Replication
Protein A Bound To Single Stranded Dna, Rpa70 Subunit,
Residues 183-420
Length = 246
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/254 (41%), Positives = 155/254 (61%), Gaps = 13/254 (5%)
Query: 213 SEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVT 272
S + S+++PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D + GEIR T
Sbjct: 2 SHMQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRAT 60
Query: 273 CFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASI 332
FN D+F+ +E K+Y S+G+LK A K F + ND E+ + + V C EDD +
Sbjct: 61 AFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC-EDDHHL 119
Query: 333 PRQQFHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRS 391
P QF F I+D+E +S+VD+IG+ SY T +R N E KR ++L D SG+
Sbjct: 120 PTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKV 179
Query: 392 VELTLWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFP 450
V TLWG + DG R P+LA+K RVSDF G+ + +S++ + PD P
Sbjct: 180 VTATLWGEDADKFDGSRQ---------PVLAIKGARVSDFGGRSLSVLSSSTIIANPDIP 230
Query: 451 EAHRLKEWFEKEGK 464
EA++L+ WF+ EG+
Sbjct: 231 EAYKLRGWFDAEGQ 244
>gi|401410388|ref|XP_003884642.1| hypothetical protein NCLIV_050400 [Neospora caninum Liverpool]
gi|325119060|emb|CBZ54612.1| hypothetical protein NCLIV_050400 [Neospora caninum Liverpool]
Length = 919
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 141/447 (31%), Positives = 222/447 (49%), Gaps = 46/447 (10%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
IP+ L Y+ KWTI+ARV KG++R YN RG G++F+ +L D D GEIR T FN+
Sbjct: 466 FIPLKDLTAYVAKWTIRARVDVKGDIRKYNGARGPGQLFNVELKDKD-GEIRATFFNSAV 524
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPR-QQF 337
D++Y+ ++ GK+Y G +KP FNH +D E+ D S + + E A IP +
Sbjct: 525 DKWYNVLQEGKVYYFRGGLVKPKNPRFNHTRHDYELTFDEKSSI-VEAEPGADIPSISRA 583
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASL-MRKNGTETQKRTLHLRDMSGRSVELTL 396
I +E E NS V LI +V P S+ ++ G + KR + L D GRS+ LTL
Sbjct: 584 DLVDIRGIEEKEVNSTVSLIAIVHDYRPIQSITIKSTGQQKPKRDVFLVDEGGRSLALTL 643
Query: 397 WGNFCN---DDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAH 453
WG+ +D L + PI+ K+ +V D+NGK + + T++ + PD +
Sbjct: 644 WGDKTETIPEDQLSQK--------PIVLFKSVKVGDWNGKKLDSQGNTRIELFPDGNRSA 695
Query: 454 RLKEWFEKEGKNTQS-VSIS-RDSLSVGRADIRKTV------------SQIKDEGLGTKE 499
L++W+ +EG S SIS L VGR +I K++ S + D+G+
Sbjct: 696 ELQDWWNREGSQRGSFASISGGGGLGVGRKEILKSLEQVAQEAAQAEASVLSDKGV---- 751
Query: 500 KPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYR 559
+ T A + I D F + ACP C KK+ G W C C + + ++
Sbjct: 752 ---YATSCALLERIGDDRFSWPACPD------CRKKMSEEVTGCWQCPSCRKQCEQPNHT 802
Query: 560 YILQFQIQDHTGLTWVTAFQECAEEIMGMSAKD----LYSLKYVDQNDEKFGEVVRNATF 615
Y+L + D TG + E AEE MG + + L + +D+ F ++ +A
Sbjct: 803 YMLNMSLMDLTGSLRCSCMGEKAEEFMGNTKAETVLLLAEHRALDEQGRSFQDIFADANL 862
Query: 616 TKYLFKLKVKEETFSDEQRVKSTVVKA 642
+++F++ K +++ DE +K VV A
Sbjct: 863 EEWIFRICSKYDSWMDEVSIKQRVVAA 889
>gi|2833320|sp|Q23696.1|RFA1_CRIFA RecName: Full=Replication factor A 51 kDa subunit; AltName:
Full=RP-A p51; AltName: Full=Replication factor-A
protein 1; Short=RF-A protein 1; AltName:
Full=Single-stranded DNA-binding protein P51 subunit
gi|413772|emb|CAA80682.1| replication protein A 51 kilodalton subunit [Crithidia fasciculata]
Length = 467
Score = 207 bits (526), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 141/447 (31%), Positives = 230/447 (51%), Gaps = 39/447 (8%)
Query: 218 RIIPIAALNPYMG-KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
+I PI +L P++G KW I+ARV K ++R +N GK+F F L+D + IR T FN
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVADKSDIRTWNKPTSQGKLFSFTLID-ESAAIRATVFND 66
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDD--ASIPR 334
D F V G++Y S G +K A + F++++ND E+ D S V L +D A++P
Sbjct: 67 AVDTFEPLVVNGQVYYFSGGQVKNANRRFSNVNNDYELTFDRASEVILARQDSSAAALPM 126
Query: 335 QQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVE 393
Q+++F PI ++ E S+VD++GVV + +S+ +K+ G E KR + + DMS +VE
Sbjct: 127 QRYNFVPIELLKQREVGSLVDVLGVVLKVDEISSITQKSTGRELIKRNVKIGDMSA-AVE 185
Query: 394 LTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEP-DFPEA 452
+T W ND+ + V ++A++ +V F+G + + T++ + P D P+
Sbjct: 186 VTFW----NDEA----KAWNYPVGTVVALRQLKVGSFDGVTLSSTYQTKIDVNPADLPDV 237
Query: 453 HRLKEWFEKE-GKNTQSVS----ISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVS 507
+L W+ G N S+S + RK + +I+ EG+G KP+++ V
Sbjct: 238 KKLATWYVSTGGANVVSLSSQGLGAGGGGGGEGNRGRKYLDEIQSEGIGRGAKPEYVDVR 297
Query: 508 ATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGD--GRWHCDRCDQSVVECDYRYILQFQ 565
+Y K D Y ACP CNKKV G R+ C++CD +VV RY++ Q
Sbjct: 298 CVPIYFKQDAQWYDACPT------CNKKVTEEGAQGDRFRCEKCDATVVPTQ-RYLVSIQ 350
Query: 566 IQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTK-YLFKLKV 624
+ D+ W+T F E E GM A + LK Q D + + A + + +L+V
Sbjct: 351 VTDNVSQVWLTLFNEAGVEFFGMEASE---LKRRAQEDPLYIAKLAQARMNRPVVMRLRV 407
Query: 625 KEETFS------DEQRVKSTVVKAERY 645
KEET + + R++ +VV+ +
Sbjct: 408 KEETNANAMTGEESDRLRMSVVRISEF 434
>gi|154340545|ref|XP_001566229.1| putative replication factor A, 51kDa subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134063548|emb|CAM39729.1| putative replication factor A, 51kDa subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 467
Score = 206 bits (525), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 140/448 (31%), Positives = 232/448 (51%), Gaps = 41/448 (9%)
Query: 218 RIIPIAALNPYMG-KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
+I PI +L P++G KW I+ARVT K ++R +N GK+F F L+D + IR T FN
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVTDKTDIRTWNKPTSQGKLFSFTLID-ESAAIRATVFND 66
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYED--DASIPR 334
D F + G++Y S G +K A + F++++ND E+ D +S + L +D A++P
Sbjct: 67 AVDTFEPLIVNGQVYYFSGGQVKNANRRFSNVNNDYELTFDRSSEIMLARQDTSTAALPM 126
Query: 335 QQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVE 393
Q+++F PI ++ E S+VD++GVV + +S+ +K+ G E KR + + DM+ +VE
Sbjct: 127 QRYNFVPIELLKQREVGSLVDVLGVVLKVDDVSSITQKSTGRELVKRNVKMGDMTA-AVE 185
Query: 394 LTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEP-DFPEA 452
+T W ND+ V ++A++ +V F+G + + T++ + P D P+
Sbjct: 186 VTFW----NDEA----QTWGYPVGTVVALRQLKVGSFDGVTLSSTYQTKIDVNPTDLPDV 237
Query: 453 HRLKEWFEKEGKNTQSVSISRDSLSV-----GRADI-RKTVSQIKDEGLGTKEKPDWITV 506
+L W+ G S+S L G D RK + +I+ EG+G KP+++ V
Sbjct: 238 KKLATWYVSTG-GANVTSLSSQGLGAINGAGGENDRGRKYLDEIQSEGIGRGLKPEYVDV 296
Query: 507 SATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNG--DGRWHCDRCDQSVVECDYRYILQF 564
+Y K D Y ACP CNKKV G R+ C++CD++V RY++
Sbjct: 297 RCVPIYFKQDAQWYDACPT------CNKKVTEEGAQGDRFRCEKCDKTVTPTQ-RYLVSI 349
Query: 565 QIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKF-GEVVRNATFTKYLFKLK 623
Q+ D+ W+T F E E GM A + LK Q D + ++ + + +L+
Sbjct: 350 QVTDNVSQAWLTLFNEAGIEFFGMEAAE---LKRRAQEDPLYIAKLAQGRMNRPVVMRLR 406
Query: 624 VKEETFS------DEQRVKSTVVKAERY 645
VKEET S + R++ +VV+ +
Sbjct: 407 VKEETSSNAMTGEESDRLRMSVVRISEF 434
>gi|221507849|gb|EEE33436.1| replication factor, putative [Toxoplasma gondii VEG]
Length = 458
Score = 206 bits (525), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 138/436 (31%), Positives = 224/436 (51%), Gaps = 25/436 (5%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
IP+ L Y+ KWTI+ARV KG++R YN RG G++F+ +L D D GEIR T FNA
Sbjct: 6 FIPLKDLTAYVAKWTIRARVDVKGDIRKYNGARGPGQLFNVELKDKD-GEIRATFFNAAV 64
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPR-QQF 337
D++Y+ ++ GK+Y GS+KP FNH +D E+ D S + + E A IP +
Sbjct: 65 DKWYNILQEGKVYYFRGGSVKPKNPRFNHTRHDYELTFDEKSSI-VEAESGADIPSISRA 123
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASL-MRKNGTETQKRTLHLRDMSGRSVELTL 396
I +E E NS V LI +V P S+ ++ G + KR + L D GRS+ LTL
Sbjct: 124 DLVDIRGIEEKEVNSTVSLIAIVHDYRPIQSITIKSTGQQKPKRDVFLVDEGGRSLVLTL 183
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
WG + L + +C P++ +K+ +V D+NG+ + + +T++ + PD A ++
Sbjct: 184 WGE--KTETLPEEQLCQK---PLVLLKSVKVGDWNGRKLDSQGSTRVELFPDGNRAAEVQ 238
Query: 457 EWFEKEGKNTQS-VSISRDSLSVGRADIRKTVSQIKDEGLGTK-----EKPDWITVSATI 510
+W+ +EG S S+S L+VGR +I K++ Q+ E + +K + T A +
Sbjct: 239 DWWNQEGSRRGSFASLSGGGLAVGRKEILKSLEQVAQEAAQAEAAVLSDKGVYATSCALL 298
Query: 511 VYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHT 570
I D F + ACP C KK+ W C C + + ++ Y+L + D T
Sbjct: 299 ERIGDDRFSWPACP------DCRKKMNEEMPRCWQCPSCRKQCEQPNHTYMLNLSLMDLT 352
Query: 571 GLTWVTAFQECAEEIMGMSAKDLYSL----KYVDQNDEKFGEVVRNATFTKYLFKLKVKE 626
G + E AEE M + + L + +D+ F ++ +A +++F++ K
Sbjct: 353 GSLRCSCIGEKAEEFMANTKAETVLLLAEHRALDEQGRSFQDIFADANLEEWIFRICSKY 412
Query: 627 ETFSDEQRVKSTVVKA 642
+++ DE +K VV A
Sbjct: 413 DSWMDEVSIKQRVVAA 428
>gi|403221677|dbj|BAM39809.1| replication factor-A protein 1 [Theileria orientalis strain
Shintoku]
Length = 659
Score = 206 bits (524), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 162/550 (29%), Positives = 261/550 (47%), Gaps = 72/550 (13%)
Query: 129 TRVSQLPGDTDAVPAARHVGSNLPPNY-FKPEVGAGSGSFSNQSASFSNPRPE------- 180
TR+S +PGD RH+ NL P + P +G Q S+ +P+ E
Sbjct: 107 TRISVVPGD------YRHLIGNLIPTLVYHPGLGI------EQDESYKSPKKEENTKESG 154
Query: 181 -FSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVT 239
+ +T PY + P + + K E+P I+ L Y KW I+ARV
Sbjct: 155 PVRKQENVRSVKTISNPY-EPP-----KNVKKKLEIPP--TKISDLTLYTPKWLIRARVA 206
Query: 240 AKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLK 299
K ++R +NNQRG+ ++F DL DS+G EIR T F +++Y +E G++Y +S G LK
Sbjct: 207 YKSDIRKFNNQRGESQLFSVDLCDSNG-EIRATFFGESVNKWYTFLEEGQVYSISGGQLK 265
Query: 300 PAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGV 359
PA K FN L + E+ LD +QL +++D +IP F F P++ ++ ++ +D+IGV
Sbjct: 266 PANKKFNSLRHSCELVLDEHCHIQL-FQNDDTIPSFCFSFTPLDQIQNLKVGEQIDVIGV 324
Query: 360 VSYISPTASL-MRKNGTETQKRTLHLRDMSGRSVELTLWG----NFCNDDGLRLQHMCDS 414
V ++ ++ G +KR + D + S+ LT WG NF N +G DS
Sbjct: 325 VVTAKDLQTVQVKSTGKALEKRDFLICDSTKSSIWLTSWGPKIRNF-NYEG------PDS 377
Query: 415 GVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRD 474
P++ +K +V ++ GK + + +TQ+ EP EA L++W+ +N+ +++ +
Sbjct: 378 --HPLVCLKGVKVIEWQGKKLDVMGSTQVIFEPVIQEALELRKWW---NENSHTLNFGTE 432
Query: 475 SLSVGRADIRKTVSQIKDEGLGTKEKPDW---------ITVSATIVYIKCDNFCYTACPI 525
+ + + +S + + T + + T A I +K F + +CP
Sbjct: 433 TSRGSSSKVFNQMSSLAEIISATNQALQFKSIDSNGMIFTTRALIEVLKDGTFSWPSCP- 491
Query: 526 MIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEE- 584
C K+ MNN DG W+C RC+ + Y+L +I D T WVTA + E+
Sbjct: 492 -----GCRKR-MNNDDG-WYCPRCENRGTPT-HMYMLTLKIVDETSHMWVTAMTDVGEDV 543
Query: 585 --IMGMSAKDLYSLKY---VDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTV 639
IMG A +L L D+ + F T+Y+FK+K E F DE R+K
Sbjct: 544 QSIMGTKAYNLVKLMENGGTDETGKNFANYFEEVRLTEYVFKIKATVENFMDEPRLKYVR 603
Query: 640 VKAERYNYSS 649
R SS
Sbjct: 604 TNINRNRLSS 613
>gi|67603419|ref|XP_666551.1| replication protein A 70kDa [Cryptosporidium hominis TU502]
gi|54657572|gb|EAL36324.1| replication protein A 70kDa [Cryptosporidium hominis]
Length = 686
Score = 206 bits (524), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 145/514 (28%), Positives = 244/514 (47%), Gaps = 79/514 (15%)
Query: 214 EVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQR-GDGKVFHFDLLDSDGGEIRVT 272
E+P + PI + Y+ +W I RV +K ++R +++ + +GKVF F++ D+DG EIR T
Sbjct: 186 EIP--VYPIKNITSYLHRWRIVGRVVSKSDIRKFSSSKTKEGKVFSFEICDADGSEIRAT 243
Query: 273 CFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASI 332
CF D+FY ++ G++Y SRG +K A FN ++ EI + + +Q +DD I
Sbjct: 244 CFTKAVDKFYDVLKEGEVYSFSRGDVKEANTRFNTTGHEFEIIFNEDAEIQSLPQDD-RI 302
Query: 333 PRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASL-MRKNGTETQKRTLHLRDMSGRS 391
P++ F+F PI+++ G +DL+G++ P ++ ++ G +TQKR L + D SG S
Sbjct: 303 PKKTFNFVPISEIRGYSKGQSLDLLGILLKAGPITTITVKSTGADTQKRELTIIDKSGHS 362
Query: 392 VELTLWGNFCN-DDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPD-F 449
++LTLW + D+GL Q+ P++AVK V +FNG + S++ + P
Sbjct: 363 IDLTLWSERTHLDEGLISQN-------PVIAVKNAIVEEFNGFRLKLGSSSSIEWNPSGV 415
Query: 450 PEAHRLKEWFEKE-----------------GKNTQSVSISRDSLS--VGRADIRKTVSQI 490
++ LK WF + G + S R S+ V A + S +
Sbjct: 416 EQSQELKNWFFSQSNLHESVVSLSSSSPSPGNTNSNSSAKRLSIDEIVATATSGSSSSDM 475
Query: 491 KDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGD--------- 541
D G+ W+ TI I+ + + +++CP C +KV D
Sbjct: 476 LDGGI-------WVHTYGTIRSIRDNKYYWSSCP------KCKRKVTEIEDPNSINALVL 522
Query: 542 -------------GRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM-G 587
+HC C QS+ +YIL +I D TG AF E E IM G
Sbjct: 523 PYGSEKETSTSLGPNYHCPSCQQSIENPIKKYILSCEIVDSTGTIRAVAFAEHGETIMDG 582
Query: 588 MSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAE---- 643
+S + L SLK + D+ + + F++++FKL K+E + D + +K + AE
Sbjct: 583 LSPEKLESLK--ENTDKNTEDCFSDKLFSEWVFKLNGKKELYQDSEIIKYRIFSAEDMTN 640
Query: 644 ----RYNYSSETRFILDLMDKLKSGDSTSFALKA 673
+ +I D ++ +K +++S A A
Sbjct: 641 PEILNREAKRKLEYIYDKLNNIKETNTSSNAYSA 674
>gi|398018224|ref|XP_003862293.1| replication factor A, 51kDa subunit, putative [Leishmania donovani]
gi|322500522|emb|CBZ35599.1| replication factor A, 51kDa subunit, putative [Leishmania donovani]
Length = 467
Score = 206 bits (523), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 147/458 (32%), Positives = 242/458 (52%), Gaps = 43/458 (9%)
Query: 218 RIIPIAALNPYMG-KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
+I PI +L P++G KW I+ARVT K ++R +N GK+F F L+D + IR T FN
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVTDKTDIRTWNKPTSQGKLFSFTLID-ESAAIRATVFND 66
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYED--DASIPR 334
D F + G++Y S G +K A + F++++ND E+ D +S + L +D A++P
Sbjct: 67 AVDTFEPLIVNGQVYYFSGGQVKNANRRFSNVNNDYELTFDRSSEIMLARQDTSTAALPM 126
Query: 335 QQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVE 393
Q+++F PI ++ E S+VD++GVV + +S+ +K+ G E KR + + DM+ +VE
Sbjct: 127 QRYNFVPIELLKQREVGSLVDVLGVVLKVDEVSSITQKSTGRELVKRNVKMGDMTA-AVE 185
Query: 394 LTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEP-DFPEA 452
+T W ND+ + C V ++A++ +V F+G + + T++ I P D P+
Sbjct: 186 VTFW----NDEA---KAWC-YPVGTVVALRQLKVGSFDGVTLSSTYQTKIDINPTDLPDV 237
Query: 453 HRLKEWFEKE-GKNTQSVS---ISRDSLSVGRADI-RKTVSQIKDEGLGTKEKPDWITVS 507
+L W+ G N S+S + S + G +D RK + +I+ EG+G KP+++ V
Sbjct: 238 KKLAAWYVTTGGANVTSLSSQGLGAASGAGGESDRGRKYLDEIQSEGIGRGLKPEYVDVR 297
Query: 508 ATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNG--DGRWHCDRCDQSVVECDYRYILQFQ 565
+Y K D Y ACP CNKKV G R+ C++CD++V RY++ Q
Sbjct: 298 CVPIYFKQDAQWYDACPT------CNKKVTEEGAQGDRFRCEKCDKTVTPTQ-RYLVSIQ 350
Query: 566 IQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKF-GEVVRNATFTKYLFKLKV 624
+ D+ W+T F E E GM A + LK Q D + ++ + + +L+V
Sbjct: 351 VTDNVSQAWLTLFNEAGIEFFGMEAAE---LKRRAQEDPLYIAKLAQGRMNRPVVMRLRV 407
Query: 625 KEETFS------DEQRVKSTVVKAERY----NYSSETR 652
KEET S + R++ +VV+ + S ETR
Sbjct: 408 KEETSSNAMTGEESDRLRMSVVRISEFMPIAGTSEETR 445
>gi|237839391|ref|XP_002368993.1| hypothetical protein TGME49_036080 [Toxoplasma gondii ME49]
gi|211966657|gb|EEB01853.1| hypothetical protein TGME49_036080 [Toxoplasma gondii ME49]
gi|221483366|gb|EEE21685.1| replication factor, putative [Toxoplasma gondii GT1]
Length = 458
Score = 206 bits (523), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 138/436 (31%), Positives = 223/436 (51%), Gaps = 25/436 (5%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
IP+ L Y+ KWTI+ARV KG++R YN RG G++F+ +L D D GEIR T FNA
Sbjct: 6 FIPLKDLTAYVAKWTIRARVDVKGDIRKYNGARGPGQLFNVELKDKD-GEIRATFFNAAV 64
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPR-QQF 337
D++Y+ ++ GK+Y GS+KP FNH +D E+ D S + + E A IP +
Sbjct: 65 DKWYNILQEGKVYYFRGGSVKPKNPRFNHTRHDYELTFDEKSSI-VEAESGADIPSISRA 123
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASL-MRKNGTETQKRTLHLRDMSGRSVELTL 396
I +E E NS V LI +V P S+ ++ G + KR + L D GRS+ LTL
Sbjct: 124 DLVDIRGIEEKEVNSTVSLIAIVHDYRPIQSITIKSTGQQKPKRDVFLVDEGGRSLVLTL 183
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
WG + L + +C P++ +K+ +V D+NG+ + + T++ + PD A ++
Sbjct: 184 WGE--KTETLPEEQLCQK---PLVLLKSVKVGDWNGRKLDSQGNTRVELFPDGNRAAEVQ 238
Query: 457 EWFEKEGKNTQS-VSISRDSLSVGRADIRKTVSQIKDEGLGTK-----EKPDWITVSATI 510
+W+ +EG S S+S L+VGR +I K++ Q+ E + +K + T A +
Sbjct: 239 DWWNQEGSRRGSFASLSGGGLAVGRKEILKSLEQVAQEAAQAEAAVLSDKGVYATSCALL 298
Query: 511 VYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHT 570
I D F + ACP C KK+ W C C + + ++ Y+L + D T
Sbjct: 299 ERIGDDRFSWPACP------DCRKKMNEEMPRCWQCPSCRKQCEQPNHTYMLNLSLMDLT 352
Query: 571 GLTWVTAFQECAEEIMGMSAKDLYSL----KYVDQNDEKFGEVVRNATFTKYLFKLKVKE 626
G + E AEE M + + L + +D+ F ++ +A +++F++ K
Sbjct: 353 GSLRCSCIGEKAEEFMANTKAETVLLLAEHRALDEQGRSFQDIFADANLEEWIFRICSKY 412
Query: 627 ETFSDEQRVKSTVVKA 642
+++ DE +K VV A
Sbjct: 413 DSWMDEVSIKQRVVAA 428
>gi|146092153|ref|XP_001470220.1| putative replication factor A, 51kDa subunit [Leishmania infantum
JPCM5]
gi|134085014|emb|CAM69415.1| putative replication factor A, 51kDa subunit [Leishmania infantum
JPCM5]
Length = 467
Score = 206 bits (523), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 147/458 (32%), Positives = 242/458 (52%), Gaps = 43/458 (9%)
Query: 218 RIIPIAALNPYMG-KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
+I PI +L P++G KW I+ARVT K ++R +N GK+F F L+D + IR T FN
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVTDKTDIRTWNKPTSQGKLFSFTLID-ESAAIRATVFND 66
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYED--DASIPR 334
D F + G++Y S G +K A + F++++ND E+ D +S + L +D A++P
Sbjct: 67 AVDTFEPLIVNGQVYYFSGGQVKNANRRFSNVNNDYELTFDRSSEIMLARQDTSTAALPM 126
Query: 335 QQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVE 393
Q+++F PI ++ E S+VD++GVV + +S+ +K+ G E KR + + DM+ +VE
Sbjct: 127 QRYNFVPIELLKQREVGSLVDVLGVVLKVDEVSSITQKSTGRELVKRNVKMGDMTA-AVE 185
Query: 394 LTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEP-DFPEA 452
+T W ND+ + C V ++A++ +V F+G + + T++ I P D P+
Sbjct: 186 VTFW----NDEA---KAWC-YPVGTVVALRQLKVGSFDGVTLSSTYQTKIDINPTDLPDV 237
Query: 453 HRLKEWFEKE-GKNTQSVS---ISRDSLSVGRADI-RKTVSQIKDEGLGTKEKPDWITVS 507
+L W+ G N S+S + S + G +D RK + +I+ EG+G KP+++ V
Sbjct: 238 KKLATWYVTTGGANVTSLSSQGLGAASGAGGESDRGRKYLDEIQSEGIGRGLKPEYVDVR 297
Query: 508 ATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNG--DGRWHCDRCDQSVVECDYRYILQFQ 565
+Y K D Y ACP CNKKV G R+ C++CD++V RY++ Q
Sbjct: 298 CVPIYFKQDAQWYDACPT------CNKKVTEEGAQGDRFRCEKCDKTVTPTQ-RYLVSIQ 350
Query: 566 IQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKF-GEVVRNATFTKYLFKLKV 624
+ D+ W+T F E E GM A + LK Q D + ++ + + +L+V
Sbjct: 351 VTDNVSQAWLTLFNEAGIEFFGMEAAE---LKRRAQEDPLYIAKLAQGRMNRPVVMRLRV 407
Query: 625 KEETFS------DEQRVKSTVVKAERY----NYSSETR 652
KEET S + R++ +VV+ + S ETR
Sbjct: 408 KEETSSNAMTGEESDRLRMSVVRISEFMPIAGTSEETR 445
>gi|47227767|emb|CAG08930.1| unnamed protein product [Tetraodon nigroviridis]
Length = 416
Score = 206 bits (523), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 143/482 (29%), Positives = 225/482 (46%), Gaps = 107/482 (22%)
Query: 16 QQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSVVRLTKFTCNVIQN- 73
++ +Q + R+R+++SDG + ML+TQ N L+ L + L + N++++
Sbjct: 3 RKIEQGNGPTRYRVMMSDGRHTLSSFMLSTQLNYLIEENTLAQNCICVLKRHVTNILKDG 62
Query: 74 RMIVIVMDLDVII---DKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVSLQHHNNTR 130
R +VI++++DVI + IG P P
Sbjct: 63 RRVVIILEIDVIKRAEEVAGKIGDPTPY-------------------------------- 90
Query: 131 VSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNP---RPEFSRPYAS 187
T+AV SNLP F+ +G+ S S + P R FS+ +
Sbjct: 91 -------TEAVWEV--TVSNLP---FRSNESTANGTKPRLSPSLTPPEQKRKGFSKDF-- 136
Query: 188 NYARTPQAPYMQSPSMYANRGLVGKSEVPS------RIIPIAALNPYMGKWTIKARVTAK 241
G G S +PS +++PIA+LNPY KWTI+AR+T K
Sbjct: 137 --------------------GKKGPSAMPSTPGGGSKVVPIASLNPYQSKWTIRARITNK 176
Query: 242 GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPA 301
+R ++N RG+GK+F +++D + GEIR T FN D+F+ +E GK+Y +S+ +LK A
Sbjct: 177 SSIRTWSNARGEGKLFSMEMVD-ESGEIRTTGFNQEVDKFFSLIEVGKVYYISKCTLKIA 235
Query: 302 QKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVS 361
K + + ND E+ L+ S + C ED +P Q F I+D+E E +++VD+IGV
Sbjct: 236 NKQYTSVKNDYEMTLNGESTIIPC-EDSCDVPLVQCDFVSISDLENKEKDAIVDVIGVCK 294
Query: 362 YISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG------------------NFCND 403
+ L ++ E KRTLHL DMSG+ V +TLWG N
Sbjct: 295 SVDEATRLTTRSNREVSKRTLHLMDMSGKLVTVTLWGEEVRTVRGTSVRRSFTLLNIRMK 354
Query: 404 DGL-------RLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
RL D P++A+K ++SDF G+ + ++ L I PD PEA++L+
Sbjct: 355 TATRFPGRMNRLAENFDGSGEPVVAIKGAKLSDFGGRSLSASFSSTLMINPDIPEAYKLR 414
Query: 457 EW 458
W
Sbjct: 415 GW 416
>gi|440491670|gb|ELQ74291.1| Single-stranded DNA-binding replication protein A
[Trachipleistophora hominis]
Length = 577
Score = 205 bits (521), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 172/664 (25%), Positives = 301/664 (45%), Gaps = 118/664 (17%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PV+Q++ LK + K + R+ + +SDG +G+ ++Q ++ V G +++ +++
Sbjct: 23 PVVQLLSLKKIEGKSDKTV-----RYHITISDGKLYMKGIFSSQVSKEV--GDIKVNTII 75
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPA----QRPSSNEQPGSVTGNPQSN 117
+++ F + + + I D C+ +G P A + SS E S + N
Sbjct: 76 KISDFVILEKNGNCFIYIKGCEKIRD-CERVGSPKNASSTEKVDSSVEMDSSKIKQSEKN 134
Query: 118 ATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNP 177
+ +NN RV +VG +G + +S + +N
Sbjct: 135 TAKRAPDENNNKRV---------------------------QVGDNNGKTAKESVTGTN- 166
Query: 178 RPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKAR 237
N + Y PIAALNP+ KW +K
Sbjct: 167 ----------NSTDDEKKAYT----------------------PIAALNPFQTKWIVKGT 194
Query: 238 VTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGS 297
V K E+R + ++ DGK F F+LLD G I+ FN AD FY + G + +S+
Sbjct: 195 VQKKSEMREF--KKKDGKFFSFELLDKTGN-IKCVAFNDGADLFYGMIVEGSVVEISKAV 251
Query: 298 LKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLI 357
+K K F + +D EI L+ S+V L E+ S+ + I+++ G N + D+I
Sbjct: 252 VKMCNKKFANTSSDYEIHLEKNSVVSLLNEEGLSMS---YDLCKISNLAGRVNKANCDVI 308
Query: 358 GVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGV 416
G+V P + ++ K + E +KR L L D +G +V TLWG+ + +
Sbjct: 309 GIVHEAFPVSVVLAKASQREIKKRDLVLADETG-TVRATLWGD---------KSEIELDD 358
Query: 417 FPILAVKAGRVSDFNGKVV-GTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDS 475
P+L +K RV +FN VV T + + ++P+ EA+ L+ W+++ + QSV + R
Sbjct: 359 HPVLLLKDVRVGEFNNAVVLSTAFGSAVKVDPEMDEAYALRGWYDE---HKQSVVVERPQ 415
Query: 476 LSVGRADIRKTVSQIKD-EGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNK 534
R + I++ +G GT SAT+++I+ DN Y AC CNK
Sbjct: 416 --------RNDYAFIEEIQGYGT--------CSATVLFIREDNLFYNACA-----NNCNK 454
Query: 535 KVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLY 594
KV +G ++C+RC+Q+ C+ RY+ + D T W+ F + E GM+A +L
Sbjct: 455 KVSLTDEG-YYCERCNQTREICNIRYLTTLHVADFTQQVWLNVFDDFCTEFFGMTAVELK 513
Query: 595 SLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFI 654
+ ++N + ++ + +Y+ K+K EE ++ E RV+ + ++ NY E+ +
Sbjct: 514 KMG--EENATQLQNYLKTLLYREYVIKMKRSEEVYNGEMRVRWRGLSIKKINYLDESVRM 571
Query: 655 LDLM 658
L LM
Sbjct: 572 LRLM 575
>gi|157871830|ref|XP_001684464.1| putative replication factor A, 51kDa subunit [Leishmania major
strain Friedlin]
gi|68127533|emb|CAJ05550.1| putative replication factor A, 51kDa subunit [Leishmania major
strain Friedlin]
Length = 467
Score = 204 bits (520), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 146/458 (31%), Positives = 241/458 (52%), Gaps = 43/458 (9%)
Query: 218 RIIPIAALNPYMG-KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
+I PI +L P++G KW I+ARVT K ++R +N GK+F F L+D + IR T FN
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVTDKTDIRTWNKPTSQGKLFSFTLID-ESAAIRATVFND 66
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYED--DASIPR 334
D F + G++Y S G +K A + F++++ND E+ D +S + L +D A++P
Sbjct: 67 AVDTFEPLIVNGQVYYFSGGQVKNANRRFSNVNNDYELTFDRSSEIMLARQDTSTAALPM 126
Query: 335 QQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVE 393
Q+++F PI ++ E S+VD++GVV + +S+ +K+ G E KR + + DM+ +VE
Sbjct: 127 QRYNFVPIELLKQREVGSLVDVLGVVLKVDEVSSITQKSTGRELMKRNVKMGDMTA-AVE 185
Query: 394 LTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEP-DFPEA 452
+T W ND+ + C V ++A++ +V F+G + + T++ I P D P+
Sbjct: 186 VTFW----NDEA---KAWC-YPVGTVVALRQLKVGSFDGVTLSSTYQTKIDINPTDLPDV 237
Query: 453 HRLKEWFEKE-GKNTQSVS---ISRDSLSVGRADI-RKTVSQIKDEGLGTKEKPDWITVS 507
+L W+ G N S+S + S + G +D RK + +I+ EG+G KP+++ V
Sbjct: 238 KKLATWYVATGGANVTSLSSQGLGAASGAGGESDRGRKYLDEIQSEGIGRGLKPEYVDVR 297
Query: 508 ATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNG--DGRWHCDRCDQSVVECDYRYILQFQ 565
+Y K D Y ACP CNKKV G R+ C++CD++V RY++ Q
Sbjct: 298 CVPIYFKQDAQWYDACPT------CNKKVTEEGAQGDRFRCEKCDKTVTPTQ-RYLVSIQ 350
Query: 566 IQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKF-GEVVRNATFTKYLFKLKV 624
+ D+ W+T F E E GM A + LK Q D + ++ + + +L+V
Sbjct: 351 VTDNVSQAWLTLFNEAGIEFFGMEAAE---LKRRAQEDPLYIAKLAQGRMNRPVVMRLRV 407
Query: 625 KEE------TFSDEQRVKSTVVKAERY----NYSSETR 652
KEE T + R++ +VV+ + S ETR
Sbjct: 408 KEEMSSNSMTGEESDRLRMSVVRISEFMPIAGTSEETR 445
>gi|401425076|ref|XP_003877023.1| putative replication factor A, 51kDa subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493267|emb|CBZ28552.1| putative replication factor A, 51kDa subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 467
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 146/458 (31%), Positives = 242/458 (52%), Gaps = 43/458 (9%)
Query: 218 RIIPIAALNPYMG-KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
+I PI +L P++G KW I+ARVT K ++R +N GK+F F L+D + IR T FN
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVTDKTDVRTWNKPTSQGKLFSFTLID-ESAAIRATVFND 66
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYED--DASIPR 334
D F + G++Y S G +K A + F++++ND E+ D +S + L +D A++P
Sbjct: 67 AVDTFEPLIVNGQVYYFSGGQVKNANRRFSNVNNDYELTFDRSSEIMLARQDTSTAALPM 126
Query: 335 QQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVE 393
Q+++F PI ++ E S+VD++GVV + +S+ +K+ G E KR + + DM+ +VE
Sbjct: 127 QRYNFVPIELLKQREVGSLVDVLGVVLKVDEVSSITQKSTGRELVKRNVKMGDMTA-AVE 185
Query: 394 LTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEP-DFPEA 452
+T W ND+ + C V ++A++ +V F+G + + T++ I P D P+
Sbjct: 186 VTFW----NDEA---KAWC-YPVGTVVALRQLKVGSFDGVTLSSTYQTKIDINPTDLPDV 237
Query: 453 HRLKEWFEKE-GKNTQSVS---ISRDSLSVGRADI-RKTVSQIKDEGLGTKEKPDWITVS 507
+L W+ G N S+S + S + G +D RK + +I+ +G+G KP+++ V
Sbjct: 238 KKLATWYVTTGGANVMSLSSQGLGAASGAGGESDRGRKYLDEIQSDGIGRGLKPEYVDVR 297
Query: 508 ATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNG--DGRWHCDRCDQSVVECDYRYILQFQ 565
+Y K D Y ACP CNKKV G R+ C++CD++V RY++ Q
Sbjct: 298 CVPIYFKQDAQWYDACPT------CNKKVTEEGAQGDRFRCEKCDKTVTPTQ-RYLVSIQ 350
Query: 566 IQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKF-GEVVRNATFTKYLFKLKV 624
+ D+ W+T F E E GM A + LK Q D + ++ + + +L+V
Sbjct: 351 VTDNVSQAWLTLFNEAGIEFFGMEAAE---LKRRAQEDPLYIAKLAQGRMNRPVVMRLRV 407
Query: 625 KEETFS------DEQRVKSTVVKAERY----NYSSETR 652
KEET S + R++ +VV+ + S ETR
Sbjct: 408 KEETSSNAMTGEESDRLRMSVVRISEFMPIAGTSEETR 445
>gi|240274193|gb|EER37711.1| replication factor A 1 [Ajellomyces capsulatus H143]
Length = 541
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 139/445 (31%), Positives = 221/445 (49%), Gaps = 82/445 (18%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI AL+PY KWTIKAR T K + K +H + GE ++ N +
Sbjct: 168 IYPIEALSPYSHKWTIKARCTNKSAI----------KTWH-----NKNGEGKLFSVNLLD 212
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D +G+I + F D + +E++A
Sbjct: 213 D-------SGEIRATA--------------------FKDQCDSLYGVFEEEAG------- 238
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVELTLW 397
+ +D+IGV+ + + ++ K ++ KR L L D +G SV LT+W
Sbjct: 239 -------------TTIDVIGVLKDVGELSQILSKTTSKPYDKRDLTLVDNTGYSVRLTVW 285
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKE 457
GN + DS ++A K +VSDFNG+ + +S+ + ++PD +AH+LK
Sbjct: 286 GNIAKE--------FDSVPESVVAFKGVKVSDFNGRSLSLLSSGSMTVDPDIEDAHKLKG 337
Query: 458 WFEKEGKNTQSVSISRDSLSVG---RADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIK 514
W++ +G++ S + + G RA KT+ Q+ + LG EKPD+ +V AT+VY+K
Sbjct: 338 WYDAQGRSETFASHDSMNNAAGFGDRASSFKTIVQVHEGNLGMSEKPDYFSVKATVVYVK 397
Query: 515 CDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTW 574
D Y AC + D+ CNKKV+ + +G+W C+RCDQS +YRYIL + DHTG W
Sbjct: 398 QDTMAYPAC---LTDK-CNKKVLQDENGQWRCERCDQSFPHPEYRYILSVNVCDHTGALW 453
Query: 575 VTAFQECAEEIMGMSAKDLYSLKYVDQNDEK-FGEVVRNATFTKYLFKLKVKEETFSDEQ 633
++ F E + I+G SA +L LK +NDE+ + E+V+ A + F + K + F D+Q
Sbjct: 454 LSCFDEVGKIILGTSANELMELK---ENDERAYEELVQRANCRAWNFNCRAKMDNFQDQQ 510
Query: 634 RVKSTVVKAERYNYSSETRFILDLM 658
RV+ V +YS E+ + +L+
Sbjct: 511 RVRYQVSSVSAIDYSVESARLAELI 535
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 11/118 (9%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PV+Q + +K + Q + +RFR V SD + Q ML TQ N VTSG L G V
Sbjct: 27 PVVQCVQVKPL-----PPQPNSPERFRAVFSDITNYVQTMLGTQANHYVTSGQLVRGCFV 81
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVI--IDKCD-PIGKPVP---AQRPSSNEQPGSVTGN 113
RL F N+I+ + I+I+ DL+V+ + C+ IG P P Q P +++ N
Sbjct: 82 RLKSFQANMIKGKRILIIFDLEVLDRLGICEKKIGDPQPLDTKQEEQDKTIPTTISSN 139
>gi|429327218|gb|AFZ78978.1| replication factor-A protein 1, putative [Babesia equi]
Length = 646
Score = 203 bits (517), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 157/534 (29%), Positives = 256/534 (47%), Gaps = 62/534 (11%)
Query: 129 TRVSQLPGDTDAVPAARH-VGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFSRPYAS 187
TR++ +PGD RH +G +P + P++ + + + E +S
Sbjct: 107 TRITIIPGD------YRHLIGHLIPALVYHPKLAV-----PQDPQNIHDMKQEKLVMPSS 155
Query: 188 NYARTPQ----------APYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKAR 237
R PQ PY S +G K+++ + I L Y KW I AR
Sbjct: 156 GPIRKPQEQPRTVKAVSGPYDSS------KGAGKKTDISP--VKITDLTLYTPKWLIHAR 207
Query: 238 VTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGS 297
V K E+R +NNQRG+ ++F DL D+ G EIR F ++Y +E G++Y +S G
Sbjct: 208 VVYKTEIRKFNNQRGESQLFSADLCDAHG-EIRAIFFGEAVTKWYSFLEEGQVYSISGGQ 266
Query: 298 LKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLI 357
LKPA K FN L + E+ LD S +QL +++D IP F P+N ++ ++ +D+I
Sbjct: 267 LKPANKRFNALKHSCEMILDENSHIQL-FQNDDKIPSICCTFTPLNQLDDIKIGESIDVI 325
Query: 358 GVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSG- 415
GVV + + S+ +K G +K+ + + D + ++ LTLWGN + Q + G
Sbjct: 326 GVVVKTNDSQSIQQKGTGNVIEKKDVFIVDSTRTTICLTLWGN-------KTQALNGKGS 378
Query: 416 -VFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEK-EGKNT------Q 467
P++ +K +V+ + GK + +TQ+ IEP PEA L++W+ +GK +
Sbjct: 379 DSHPVICLKGVKVNSWQGKKLDAQGSTQITIEPVIPEALELRKWWTNVKGKRIIDSPFNE 438
Query: 468 SVSISRDSLSVGRA-DIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIM 526
++S + +A + + L T A I ++ ++F + ACP
Sbjct: 439 LCTLSHIVSATNQALQFKCKFDTVLTLFLAIDSNGMVFTTRALIEILRDNSFSWPACP-- 496
Query: 527 IGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM 586
C K+++N GD RW+C RC+ S + Y+L +I D T WVTAF E IM
Sbjct: 497 ----GCRKRMVNEGD-RWNCTRCNSSSSPI-HLYMLTLKIVDGTSHLWVTAFTGVGESIM 550
Query: 587 -GMSAKDLYSLKY---VDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVK 636
G+ A + +L VD N F + A ++++FK+K E F DE ++K
Sbjct: 551 NGVKAFEAVTLAEKGGVDANGRNFSNLFEEARLSEFVFKIKATVENFMDEPKIK 604
>gi|361128289|gb|EHL00233.1| putative Replication factor A protein 1 [Glarea lozoyensis 74030]
Length = 365
Score = 202 bits (514), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 120/360 (33%), Positives = 201/360 (55%), Gaps = 18/360 (5%)
Query: 301 AQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVV 360
A+K F++++ND E+ D ++V+ C ED +P+ +++F I ++ +E +S +D+IGV+
Sbjct: 16 AKKQFSNINNDYELAFDKDTIVEKC-EDQNDVPQVRYNFTNIGALQEVEKDSTIDVIGVL 74
Query: 361 SYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPI 419
++ ++ K + KR L L D SG SV++T+WG + D+ I
Sbjct: 75 KEVNDVNQIVSKTTQQPYDKRDLTLVDDSGYSVKMTIWG--------KTATKFDANPEQI 126
Query: 420 LAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKN-TQSVSISRDSLSV 478
+A K +VSDFNGK + +S+ + I+PD EA++LK W++ G++ T + S +
Sbjct: 127 VAFKGAKVSDFNGKSLSLLSSGSMSIDPDIAEAYKLKGWYDSNGRSETFAAHTSTAGAAG 186
Query: 479 GRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMN 538
GR + KTV+Q+KDE LG +K D+ V ATIVYIK D Y AC CNKKV+
Sbjct: 187 GRNNELKTVAQVKDENLGMNDKDDYFAVKATIVYIKQDPISYPAC----ASENCNKKVIE 242
Query: 539 NGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKY 598
+ +G W C C+ + + +R+I+ + DHTG +++ F + IMGM+ L LK
Sbjct: 243 D-NGYWTCASCNINHPKPQHRFIMTVNVSDHTGSFYLSCFDDVGRLIMGMNGDQLMELKE 301
Query: 599 VDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLM 658
D +E + +A Y F + K +T+ D+QRV+ V++A ++ E R + +L+
Sbjct: 302 TD--NEAVNKAFEDANCKTYTFTCRAKMDTYQDQQRVRYQVLRAAPIDFKQEARKLTELI 359
>gi|40317150|gb|AAR84278.1| putative replication protein A subunit 1 [Leishmania amazonensis]
Length = 467
Score = 202 bits (514), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 146/458 (31%), Positives = 241/458 (52%), Gaps = 43/458 (9%)
Query: 218 RIIPIAALNPYMG-KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
+I PI +L P++G KW I+ARVT K ++R +N GK+F F L+D + IR T FN
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVTDKTDVRTWNKPTSQGKLFSFTLID-ESAAIRATVFND 66
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYED--DASIPR 334
D F + G++Y S G +K A + F++++ND E+ D +S + L +D A++P
Sbjct: 67 AVDTFEPLIVNGQVYYFSGGQVKNANRRFSNVNNDYELTFDRSSEIMLARQDTSTAALPM 126
Query: 335 QQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVE 393
Q+++F PI ++ E S+VD++GVV + +S+ +K+ G E KR + + DM+ +VE
Sbjct: 127 QRYNFVPIELLKQREVGSLVDVLGVVLKVDEVSSITQKSTGRELVKRNVKMGDMTA-AVE 185
Query: 394 LTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEP-DFPEA 452
+T W ND+ + C V ++A++ +V F+G + T++ I P D P+
Sbjct: 186 VTFW----NDEA---KAWC-YPVGTVVALRQLKVGSFHGVPFSSTYQTKIDINPTDLPDV 237
Query: 453 HRLKEWFEKE-GKNTQSVS---ISRDSLSVGRADI-RKTVSQIKDEGLGTKEKPDWITVS 507
+L W+ G N S+S + S + G +D RK + +I+ +G+G KP+++ V
Sbjct: 238 KKLATWYVTTGGANVMSLSSQGLGAASGAGGESDRGRKYLDEIQSDGIGRGLKPEYVDVR 297
Query: 508 ATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNG--DGRWHCDRCDQSVVECDYRYILQFQ 565
+Y K D Y ACP CNKKV G R+ C++CD++V RY++ Q
Sbjct: 298 CVPIYFKQDAQWYDACPT------CNKKVTEEGAQGDRFRCEKCDKTVTPTQ-RYLVSIQ 350
Query: 566 IQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKF-GEVVRNATFTKYLFKLKV 624
+ D+ W+T F E E GM A + LK Q D + ++ + + +L+V
Sbjct: 351 VTDNVSQAWLTLFNEAGIEFFGMEAAE---LKRRAQEDPLYIAKLAQGRMNRPVVMRLRV 407
Query: 625 KEETFS------DEQRVKSTVVKAERY----NYSSETR 652
KEET S + R++ +VV+ + S ETR
Sbjct: 408 KEETSSNAMTGEESDRLRMSVVRISEFMPIAGTSEETR 445
>gi|324505436|gb|ADY42337.1| Replication factor A 73 kDa subunit [Ascaris suum]
Length = 613
Score = 202 bits (513), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 139/462 (30%), Positives = 232/462 (50%), Gaps = 30/462 (6%)
Query: 209 LVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGE 268
L+G++ P R+I PY+ KW I VTAK +LR RG+ KVF+F++ D +GG
Sbjct: 172 LIGQNLTPIRLI-----TPYVNKWRICGVVTAKEDLRDVKTARGELKVFNFEVTDEEGGC 226
Query: 269 IRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE- 327
IR+ F AD+FY V+ G +Y +S G++K A K +N +D E+ + + + C +
Sbjct: 227 IRIAAFGDTADKFYAIVQKGSMYYISGGTVKQANKRYNTTGHDYELTMRSDTEISPCIDR 286
Query: 328 DDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASL-MRKNGTETQKRTLHLRD 386
+ PR + P+ V +D+I ++ +S + R G +KR LHL D
Sbjct: 287 ERIEEPRLNLNVVPLAMVSS-RAGQCIDIIAIIDQVSELQQVTQRSTGALLEKRDLHLID 345
Query: 387 MSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKV-VGTISTTQLFI 445
SG V LTLWG + LQH + VK V +FNG + +++T++ I
Sbjct: 346 ESGAVVVLTLWGEQARSHDVDLQHQA-------VGVKGASVREFNGSYSLSALNSTRIEI 398
Query: 446 EPDFPEAHRLKEWFEKEGKNTQSVSISRDSL---SVGRADIRKTVSQIKDE-GLGTKE-K 500
PD E+ L W+ ++ + I+ S+ S R D+R + I D LG E K
Sbjct: 399 NPDCDESKALYVWYREKRPSIDVKRITTGSMGGDSYAR-DLR--LIGIADAMNLGRNEDK 455
Query: 501 PDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRY 560
+ V+A I +K D Y +C G C KKV+ D ++ C++C+ ++ Y
Sbjct: 456 GAYFNVTAMISSLKADGALYKSC----GTNGCKKKVI-EMDNQYRCEKCNLTLDSFKYVL 510
Query: 561 ILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLF 620
+L ++ D +G WVT F+E A +++G +A +L L ++ DE + +V F +Y F
Sbjct: 511 LLSMELSDFSGSHWVTVFEEKATKLLGKTAAELGDLLESNRLDE-YNDVFSAVRFREYTF 569
Query: 621 KLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLK 662
+++ K E ++D +R+K +V + +Y + + KL+
Sbjct: 570 RIRAKSEFYNDTERIKWSVFELNNVDYDKYVEELTKAVTKLE 611
>gi|294929957|ref|XP_002779439.1| replication protein A 70kDa, putative [Perkinsus marinus ATCC
50983]
gi|239888547|gb|EER11234.1| replication protein A 70kDa, putative [Perkinsus marinus ATCC
50983]
Length = 788
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 142/471 (30%), Positives = 238/471 (50%), Gaps = 50/471 (10%)
Query: 193 PQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRG 252
PQ P+ P Y V S IIPI+ L+ Y KWTIK RV++K ++R + N RG
Sbjct: 299 PQQPHSSGPVSY--------RPVASDIIPISQLSVYSQKWTIKGRVSSKSDVRTFVNARG 350
Query: 253 DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDL 312
+G++F +L+D GEIR T FN+ +FY ++ G++Y S+G +K A FN
Sbjct: 351 EGQLFSIELVDDQNGEIRATFFNSAVTKFYPAIQQGRVYTFSKGQVKQANARFNP-GAAY 409
Query: 313 EIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRK 372
E+ + ++++ D A IPR + I ++ + VDL G++++ +P ++++ +
Sbjct: 410 ELTFNDDAIIEEA-NDSADIPRILYKISKIATIQDRNADEFVDLCGIITHCAPISTIVVR 468
Query: 373 N-GTETQKRTLHLRDMSGRSVELTLWGNF---CNDDGLRLQHMCDSGVFPILAVKAGRVS 428
N G E +R + D SG S+E+T+WG C D R+Q+ P++ +K R+S
Sbjct: 469 NTGQERARRNFTIVDDSGCSIEMTVWGETAQNCGVDENRVQY------HPVVMIKNARIS 522
Query: 429 DFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVS 488
++ GK + T STT L ++PD A +K W+ + G+ T +V + KTV
Sbjct: 523 NYGGKSLTTASTTTLEVDPDDSRAFEVKNWWLQGGQ-TGAVQALSSGGGGAGGNAPKTVI 581
Query: 489 QIKD---------EGLGTKEKPDWITVS------ATIVYIKCDN---FCYTACPIMIGD- 529
+ G + + P+ V+ AT+ I N YT+C I D
Sbjct: 582 DVMRMDNNLYLSLSGQASSDVPNSRPVNTHNIPRATVAQIYKSNDKPLYYTSCITEIPDG 641
Query: 530 ----RPCNKKVMNN-GDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEE 584
R C+KKV + G W C Q+ +C RYI+ ++ D +G V AF E A+
Sbjct: 642 RGGIRKCSKKVEQDISTGTWSCIEGHQN-PQCMPRYIISIKLADISGEVMVRAFDEQAQA 700
Query: 585 IMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRV 635
++G+SA+D+ + +++ ++ N F K +L+ K+E ++DE+RV
Sbjct: 701 LLGVSAQDMMN----GMGEDEIETLINNTQFKKINVRLRSKKEVYTDEERV 747
>gi|209879421|ref|XP_002141151.1| replication factor-A protein 1 [Cryptosporidium muris RN66]
gi|209556757|gb|EEA06802.1| replication factor-A protein 1, putative [Cryptosporidium muris
RN66]
Length = 870
Score = 199 bits (506), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 131/463 (28%), Positives = 235/463 (50%), Gaps = 56/463 (12%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAV 277
+ PI ++ Y+ +W I RV +K ++R +++ + +GKVF F++ D++G +IR TCF
Sbjct: 376 VYPIKSITSYLHRWRIIGRVISKSDVRTFSSSKSKEGKVFSFEICDAEGSQIRATCFTKA 435
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
D+FY ++ G+IY S+G +K A FN + EI + + +Q E D+ IP++ +
Sbjct: 436 VDKFYEFLKEGEIYSFSKGDVKEANAKFNKTGHGFEIIFNEDADIQSMPE-DSRIPKKAY 494
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASL-MRKNGTETQKRTLHLRDMSGRSVELTL 396
+F I D+ +D++G++ SP ++ ++ G +TQKR L + D SG S++LTL
Sbjct: 495 NFVSIADIRNYSKGQSIDILGILWKASPIMTITIKSTGADTQKRELTILDRSGYSIDLTL 554
Query: 397 WGNFCN-DDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEP-DFPEAHR 454
W N D+G+ Q+ P++AVK + +FNG + T + P + +A
Sbjct: 555 WSERTNLDEGMLAQN-------PMIAVKNAIIEEFNGFKLKFGPNTSIEWNPINIEQADE 607
Query: 455 LKEWFEKEGKNTQSVSISRDSL----SVGRADIRKTVSQI---KDEGLGTKEKPD---WI 504
L++WF++ VS+S +S SV + R+++ +I G+ + + D W+
Sbjct: 608 LRQWFQESNNQNSIVSLSANSTGNINSVTNSQ-RQSIEEIIATATSGVNSSDILDGGIWV 666
Query: 505 TVSATIVYIKCDNFCYTACPIMIGDRPCNKKVM-----------------NNGDG----- 542
+ATI I+ + + +++C R C +KV NG+
Sbjct: 667 FTNATIRTIRDNKYFWSSC------RQCKRKVTEIEDPNSVSALILPFSSENGNKVNTGP 720
Query: 543 RWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM-GMSAKDLYSLKYVDQ 601
+HC C Q++ + +YIL ++ D TG AF E E IM G++ L S++
Sbjct: 721 NYHCPNCQQTIEDPLKKYILSCELIDSTGTLRAVAFAEHGESIMDGLNVDQLESMR---N 777
Query: 602 NDEKFGE-VVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAE 643
N EK E + + F++++FKL ++E + D +K + E
Sbjct: 778 NPEKSTEDIFADKNFSEWVFKLNGRKEVYQDSTILKYRIFGVE 820
>gi|429966174|gb|ELA48171.1| replication factor-a protein 1 (rpa1) [Vavraia culicis
'floridensis']
Length = 612
Score = 199 bits (505), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 171/660 (25%), Positives = 301/660 (45%), Gaps = 106/660 (16%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PV+Q++ LK + K + R+ + +SD +G+ ++Q ++ V G L++ +++
Sbjct: 54 PVVQLLSLKKIEGKSDKTV-----RYHITISDSKLYMKGIFSSQVSKDV--GDLRVNTLI 106
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGV 121
+++ F + + + I D C+ +G P A S+++ SV +
Sbjct: 107 KISDFVILEKNGNCFIYIKGCEKIKD-CERMGSPKNAN--STDKVDSSVEMDS------- 156
Query: 122 SLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEF 181
S++ + R V N + +VG+ +G ++A
Sbjct: 157 ----------SKIKHNEKGENEKRAVNENSSK---RMQVGSSNGKAEKENAGCVRS---- 199
Query: 182 SRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAK 241
A++ A + Y PIAALNP+ KW +K V K
Sbjct: 200 ----ANHDADGDKKAYT----------------------PIAALNPFQTKWIVKGTVQKK 233
Query: 242 GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPA 301
ELR + ++ DGK F F+LLD G I+ FN AD F+ V G + +S+ +K
Sbjct: 234 SELREF--KKKDGKFFSFELLDKTGN-IKCVAFNDGADLFHGIVAEGSVVEISKAVVKMC 290
Query: 302 QKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVS 361
K F + +D EI L+ S+V L E+ ++ F I+D+ G N + D+IGVV
Sbjct: 291 NKKFANTSSDYEIHLEKNSVVSLVNEEGLAMS---FDLCKISDLVGRVNKANCDVIGVVH 347
Query: 362 YISPTASLMRK-NGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPIL 420
P + ++ K + E +KR L L D +G +V TLWG+ + + P+L
Sbjct: 348 EAFPVSVVLAKASQREIKKRDLILVDQTG-TVRATLWGD---------KSEIELDEHPVL 397
Query: 421 AVKAGRVSDFNGKVV-GTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVG 479
+K RV +FN VV T + + ++P+ EA+ L+ W+++ + QSV + R
Sbjct: 398 LLKDVRVGEFNNAVVLSTAFGSAVKVDPEMDEAYSLRGWYDE---HKQSVVVERPQ---- 450
Query: 480 RADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNN 539
++E +E + T +AT+++I+ DN Y AC CNKKV
Sbjct: 451 -----------RNEYTFIEEIQSYGTCAATVLFIREDNLFYNACA-----NNCNKKVSLT 494
Query: 540 GDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYV 599
+G ++C+RC+Q+ C RY+ + D T W+ F + E GM+A Y LK +
Sbjct: 495 DEG-YYCERCNQTKETCSIRYLTTLHVADFTQQVWLNVFDDFCTEFFGMTA---YELKKM 550
Query: 600 -DQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLM 658
++N + ++ + +Y+ ++K EE ++ E RV+ + ++ NY E+ +L LM
Sbjct: 551 GEENATQLQNYLKTLLYKEYVIRMKRSEEVYNGEMRVRWRGLSIKKINYLDESVRMLRLM 610
>gi|389582205|dbj|GAB64760.1| replication factor a protein [Plasmodium cynomolgi strain B]
Length = 1187
Score = 199 bits (505), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 141/475 (29%), Positives = 245/475 (51%), Gaps = 56/475 (11%)
Query: 195 APYMQS--PSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRG 252
APY Q+ P + N G+ ++ I L+ Y KW IKARV +K +R + +
Sbjct: 715 APYQQTNNPVIKINDGI---------LMQINKLSQYSSKWIIKARVQSKDNVRRFYSGNK 765
Query: 253 DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDL 312
+GKVF+ +L D DG EI+ F D++Y ++ GKIY +S+G++K A K FN L +D
Sbjct: 766 EGKVFNIELCDEDG-EIKANFFGKAVDKWYDYLQVGKIYKISKGNVKAANKKFNTLKHDC 824
Query: 313 EIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMR 371
EI LD S+++L E+D +IP+ ++F I+ ++ M S+VD+IGVV S+ L++
Sbjct: 825 EITLDENSIIELLEEND-NIPKFIYNFASIDTIKNMNTGSLVDVIGVVFSFQETMQILIK 883
Query: 372 KNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQ--HMCDSGVFPILAVKAGRVSD 429
K G +KR L L D S ++ +TLWG + L+++ H+ D+ I+ K +V +
Sbjct: 884 KTGQYKEKRDLILIDDSNETINVTLWG----EHALKIEEVHLRDNS---IICFKYLKVGE 936
Query: 430 FNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNT-QSVSISRDSLSVGRADIRKTVS 488
+ GK + + T++ + P+ H L+ W+ +N SV+++ +S + +++KT+
Sbjct: 937 WQGKKLESHPKTKIDVNPEIERTHVLQTWWSSNKQNLYSSVNVNTNSFHI---ELQKTIE 993
Query: 489 QI-KDEGLGTKE----KPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNN---- 539
+I KD L ++ K T I +I Y+ACP CNKK++ N
Sbjct: 994 EIKKDVNLANEDALSGKGIVFTTFGFIDHIYNSIPVYSACP------DCNKKMITNVVEE 1047
Query: 540 ----------GDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM-GM 588
D +C +C+++ Y Y + +I D T +AF CA IM G+
Sbjct: 1048 EEDDINSSQMMDQSMYCAKCNKNNTPI-YNYSINLKITDSTDSLRASAFAGCARTIMNGL 1106
Query: 589 SAKDLYSLK--YVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVK 641
SA + +L+ YV Q + + +++ ++ F++K + DE + T+++
Sbjct: 1107 SADEFMALRQEYVTQENIENFDLIEKVKLNEFFFRIKAYMTSHMDELKKNYTIIE 1161
>gi|71664069|ref|XP_819019.1| replication factor A, 51kDa subunit [Trypanosoma cruzi strain CL
Brener]
gi|70884302|gb|EAN97168.1| replication factor A, 51kDa subunit, putative [Trypanosoma cruzi]
Length = 465
Score = 198 bits (504), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 143/449 (31%), Positives = 229/449 (51%), Gaps = 45/449 (10%)
Query: 218 RIIPIAALNPYMG-KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
+I PI +L P++G KW I+ARVT K ++R +N GK+F F L+D + IR T FN
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVTDKSDVRTWNKPTSQGKLFSFTLID-ESASIRATVFND 66
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE-DDASIPRQ 335
D F + G++Y +S G +K A + F++++ND E+ D +S + L + A+IP Q
Sbjct: 67 AVDLFNPLIVNGQVYYLSGGQVKNANRKFSNVNNDYELTFDSSSQISLARDPSSATIPLQ 126
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVEL 394
+++F PI ++ E S+VD++ VV + +S+ +K+ G E KR + + D++ +VE+
Sbjct: 127 RYNFLPIAILKQREVGSLVDVLAVVLSVEELSSITQKSTGRELIKRNVKVGDITA-AVEV 185
Query: 395 TLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
TLW ND + + +LA++ +V F+G + + + P+ P+ +
Sbjct: 186 TLW----NDQAKEWAYSPGT----VLAMRQLKVGSFDGVTLSATFQSAFDVNPNIPDVKK 237
Query: 455 LKEWF-EKEGKNTQSVSISRDSLSVGRADI--------RKTVSQIKDEGLGTKEKPDWIT 505
L EW+ G++ S+S SL VG + RK I EGLG K D+I
Sbjct: 238 LAEWYISTGGRDVSSLS----SLGVGAGNNAGGENYRGRKYFDDISAEGLGRGPKADFID 293
Query: 506 VSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGD--GRWHCDRCDQSVVECDYRYILQ 563
V VY+K D Y ACP CNKKV G R+ C++CD+ VV RY++
Sbjct: 294 VRCVPVYLKQDAQWYDACP------QCNKKVTLEGAQGERYRCEKCDRQVVPTQ-RYLVS 346
Query: 564 FQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYL-FKL 622
Q D+ W+T F E E GM A + LK + D F + + + +L
Sbjct: 347 IQASDNVSQKWLTLFNEAGVEFFGMPATE---LKKQQEADPMFVTKIAQLRMNRPVQMRL 403
Query: 623 KVKEETFS------DEQRVKSTVVKAERY 645
+VKEE+ S + RV+ TV++ +
Sbjct: 404 RVKEESSSSAAGGEESDRVRLTVMRLNEF 432
>gi|156094579|ref|XP_001613326.1| replication factor a protein [Plasmodium vivax Sal-1]
gi|148802200|gb|EDL43599.1| replication factor a protein, putative [Plasmodium vivax]
Length = 1141
Score = 198 bits (504), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 142/475 (29%), Positives = 245/475 (51%), Gaps = 56/475 (11%)
Query: 195 APYMQSPS--MYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRG 252
APY QS S + N G+ ++ I L+ Y KW IKARV +K +R + +
Sbjct: 669 APYQQSSSAVIKMNDGI---------LMQINKLSQYSSKWIIKARVQSKDNVRRFYSGNK 719
Query: 253 DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDL 312
+GKVF+ +L D DG EI+ F D++Y ++ G+IY +S+G++K A K FN L +D
Sbjct: 720 EGKVFNIELCDEDG-EIKANFFGKAVDRWYDYLQVGRIYKISKGNIKAANKKFNTLKHDC 778
Query: 313 EIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMR 371
EI LD S+++L E+D +IP+ ++F I+ ++ M S+VD+IGVV S+ L++
Sbjct: 779 EITLDENSIIELLEEND-NIPKFIYNFASIDTIKNMNTGSLVDVIGVVFSFQETMQILIK 837
Query: 372 KNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMC--DSGVFPILAVKAGRVSD 429
K G +KR L L D S ++ +TLWG + L+++ C D+ I+ K +V +
Sbjct: 838 KTGQYKEKRDLILIDDSNETINVTLWG----EHALKVEEDCLRDNS---IICFKYLKVGE 890
Query: 430 FNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNT-QSVSISRDSLSVGRADIRKTVS 488
+ GK + + T++ + P+ A+ L+ W+ +N SV+++ S + +++KT+
Sbjct: 891 WQGKKLESHPKTKIDVNPEIDRAYVLQTWWSSNKQNLYHSVNVNTSSFHI---ELQKTIE 947
Query: 489 QI-KDEGLGTKE----KPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNN---- 539
+I KD L ++ K T I +I Y+ACP CNKK++ N
Sbjct: 948 EIKKDVNLANEDALSGKGIVFTTFGFIDHIYNSIPVYSACP------DCNKKMITNVVEE 1001
Query: 540 ----------GDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM-GM 588
D +C +C+++ Y Y + +I D T +AF CA IM G+
Sbjct: 1002 EEDDISSSQMMDQSMYCAKCNKNNTPV-YNYSINLKITDSTDSLRASAFAGCARTIMNGL 1060
Query: 589 SAKDLYSLK--YVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVK 641
SA + +L+ YV Q + + +++ A ++ F++K + DE + T+++
Sbjct: 1061 SADEFMALRQEYVTQENIENFDLIEKAKLNEFFFRIKAYMTSHMDELKKNYTIIE 1115
>gi|407420060|gb|EKF38438.1| replication factor A, 51kDa subunit, putative [Trypanosoma cruzi
marinkellei]
Length = 465
Score = 198 bits (504), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 143/449 (31%), Positives = 229/449 (51%), Gaps = 45/449 (10%)
Query: 218 RIIPIAALNPYMG-KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
+I PI +L P++G KW I+ARVT K ++R +N GK+F F L+D + IR T FN
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVTDKSDVRTWNKPTSQGKLFSFTLID-ESASIRATVFND 66
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE-DDASIPRQ 335
D F + G++Y +S G +K A + F++++ND E+ D +S + L + A+IP Q
Sbjct: 67 AVDLFNPLIVNGQVYYLSGGQVKNANRKFSNVNNDYELTFDSSSQISLARDPSSATIPLQ 126
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVEL 394
+++F PI ++ E S+VD++ VV + +S+ +K+ G E KR + + D++ +VE+
Sbjct: 127 RYNFVPIAILKQREVGSLVDVLAVVLSVEELSSITQKSTGRELVKRNVKVGDITA-AVEV 185
Query: 395 TLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
TLW ND + + +LA++ +V F+G + + + P+ P+ +
Sbjct: 186 TLW----NDQAKEWTYSPGT----VLAMRQLKVGSFDGVTLSATFQSAFDVNPNIPDVKK 237
Query: 455 LKEWF-EKEGKNTQSVSISRDSLSVGRADI--------RKTVSQIKDEGLGTKEKPDWIT 505
L EW+ G++ S+S SL VG + RK I EGLG K D+I
Sbjct: 238 LAEWYISTGGRDVSSLS----SLGVGAGNNAGGENYRGRKYFDDISAEGLGRGPKADFID 293
Query: 506 VSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGD--GRWHCDRCDQSVVECDYRYILQ 563
V VY+K D Y ACP CNKKV G R+ C++CD+ VV RY++
Sbjct: 294 VRCVPVYLKQDAQWYDACP------QCNKKVTLEGAQGERYRCEKCDRQVVPTQ-RYLVS 346
Query: 564 FQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYL-FKL 622
Q D+ W+T F E E GM A + LK + D F + + + +L
Sbjct: 347 IQASDNVSQKWLTLFNEAGVEFFGMPATE---LKKQQEADPMFVTKIAQMRMNRPVQMRL 403
Query: 623 KVKEETFS------DEQRVKSTVVKAERY 645
+VKEE+ S + RV+ TV++ +
Sbjct: 404 RVKEESSSSAAGGEESDRVRLTVMRLNEF 432
>gi|407853189|gb|EKG06272.1| replication factor A, 51kDa subunit, putative [Trypanosoma cruzi]
Length = 465
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 143/449 (31%), Positives = 229/449 (51%), Gaps = 45/449 (10%)
Query: 218 RIIPIAALNPYMG-KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
+I PI +L P++G KW I+ARVT K ++R +N GK+F F L+D + IR T FN
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVTDKSDVRTWNKPTSQGKLFSFTLID-ESASIRATVFND 66
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE-DDASIPRQ 335
D F + G++Y +S G +K A + F++++ND E+ D +S + L + A+IP Q
Sbjct: 67 AVDLFNPLIVNGQVYYLSGGQVKNANRKFSNVNNDYELTFDSSSQISLARDPSSATIPLQ 126
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVEL 394
+++F PI ++ E S+VD++ VV + +S+ +K+ G E KR + + D++ +VE+
Sbjct: 127 RYNFVPIAILKQREVGSLVDVLAVVLSVEELSSITQKSTGRELIKRNVKVGDITA-AVEV 185
Query: 395 TLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
TLW ND + + +LA++ +V F+G + + + P+ P+ +
Sbjct: 186 TLW----NDQAKEWAYSPGT----VLAMRQLKVGSFDGVTLSATFQSAFDVNPNIPDVKK 237
Query: 455 LKEWF-EKEGKNTQSVSISRDSLSVGRADI--------RKTVSQIKDEGLGTKEKPDWIT 505
L EW+ G++ S+S SL VG + RK I EGLG K D+I
Sbjct: 238 LAEWYISTGGRDVSSLS----SLGVGAGNNAGGENYRGRKYFDDISAEGLGRGPKADFID 293
Query: 506 VSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGD--GRWHCDRCDQSVVECDYRYILQ 563
V VY+K D Y ACP CNKKV G R+ C++CD+ VV RY++
Sbjct: 294 VRCVPVYLKQDAQWYDACP------QCNKKVTLEGAQGERYRCEKCDRQVVPTQ-RYLVS 346
Query: 564 FQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYL-FKL 622
Q D+ W+T F E E GM A + LK + D F + + + +L
Sbjct: 347 IQASDNVSQKWLTLFNEAGVEFFGMPATE---LKKQQEADPMFVTKIAQLRMNRPVQMRL 403
Query: 623 KVKEETFS------DEQRVKSTVVKAERY 645
+VKEE+ S + RV+ TV++ +
Sbjct: 404 RVKEESSSSAAGGEESDRVRLTVMRLNEF 432
>gi|399216333|emb|CCF73021.1| unnamed protein product [Babesia microti strain RI]
Length = 676
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 133/434 (30%), Positives = 223/434 (51%), Gaps = 28/434 (6%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQF 281
I+ L+ Y KWTI AR+ K ++R +N RG+ ++F DL DS EI+ T F +++
Sbjct: 234 ISELSLYTPKWTILARIMLKSDIRKFNTPRGESQLFSLDLCDS-TSEIKATLFGDAVNKW 292
Query: 282 YHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRP 341
+ E GK+Y +S+G ++ A K FNHL++ EI LD ++VQ +DD SIP F F
Sbjct: 293 FEFFEEGKVYSISKGQIRAANKKFNHLNHPCEIILDEHAIVQ-NVDDDNSIPSSVFSFTK 351
Query: 342 INDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWGNF 400
+++++ ++ S++D+IGVV SL +K+ G +KR + + D SG S+ +TLW
Sbjct: 352 LSNIDILDQGSLIDVIGVVCQHKNIQSLQKKSLGGVIEKRDIKIVDDSGSSIWVTLW--- 408
Query: 401 CNDDGLRL-QHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWF 459
+D L + D+ PI+A+K +++D+ + + S+T++ I P P+ L +W+
Sbjct: 409 -HDKATSLTDSLLDTN--PIIALKNAKITDWQMRKLDVQSSTKVVINPQHPQTDLLCKWW 465
Query: 460 -------EKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVY 512
K GK T S+S L I Q G + V I
Sbjct: 466 IEVTQFLTKNGKTTIFNSVSIGGLEEEVESIDYLTKQATQIGQDANSQSKTFNVRGVIEI 525
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGR--WHCDRCDQSVVECDYRYILQFQIQDHT 570
+K + + + ACP C KK++ W C RC+ ++ Y+L F+I D T
Sbjct: 526 LKENIYSWPACP------GCRKKMLQEQPESPIWRCTRCNME-GSPNHTYMLNFKIVDTT 578
Query: 571 GLT-WVTAFQECAEEIM-GMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEET 628
+ W +A EEIM G+ A++L ++ + N + +A T+++FK++V+ ++
Sbjct: 579 QTSIWASAMGNVGEEIMGGVKAEELLAIASSEFNGKNLSNYFEDARLTEHIFKVRVQMDS 638
Query: 629 FSDEQRVKSTVVKA 642
F E R+K VVK
Sbjct: 639 FLGEFRIKYRVVKV 652
>gi|15148880|gb|AAK84867.1|AF399823_1 replication protein A subunit 1 [Leishmania infantum]
Length = 467
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 144/458 (31%), Positives = 239/458 (52%), Gaps = 43/458 (9%)
Query: 218 RIIPIAALNPYMG-KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
+I PI +L P++G KW I+ARVT K ++R +N GK+F F L+D + I FN
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVTDKTDIRTWNKPTSQGKLFSFTLID-ESAAIGANVFND 66
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYED--DASIPR 334
D F + G++Y S G +K A + F++++ND E+ D +S + L +D A++P
Sbjct: 67 AVDTFEPLIVNGQVYYFSGGQVKNANRRFSNVNNDYELTFDRSSEIMLARQDTSTAALPM 126
Query: 335 QQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVE 393
Q+++F PI ++ E S+VD++GVV + +S+ +K+ G E KR + + DM+ +VE
Sbjct: 127 QRYNFVPIELLKQREVGSLVDVLGVVLKVDEVSSITQKSKGRELVKRNVKMGDMTA-AVE 185
Query: 394 LTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEP-DFPEA 452
+T W ND+ + C V ++A++ +V F+G + + T++ I P D +
Sbjct: 186 VTFW----NDEA---KAWC-YPVGTVVALRQLKVGSFDGVTLSSTYKTKIDINPTDLADV 237
Query: 453 HRLKEWFEKE-GKNTQSVS---ISRDSLSVGRADI-RKTVSQIKDEGLGTKEKPDWITVS 507
+L W+ G N S+S + S + G +D RK + +I+ EG+G KP+++ V
Sbjct: 238 KKLATWYVTTGGANVTSLSSQGLGAASGAGGESDRGRKYLDEIQSEGIGRGLKPEYVDVR 297
Query: 508 ATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNG--DGRWHCDRCDQSVVECDYRYILQFQ 565
+Y K D Y ACP CNKKV G R+ C++CD++V RY++ Q
Sbjct: 298 CVPIYFKQDAQWYDACPT------CNKKVTEEGAQGDRFRCEKCDKTVTPTQ-RYLVSIQ 350
Query: 566 IQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKF-GEVVRNATFTKYLFKLKV 624
+ D+ W+T F E E GM A + LK Q D + ++ + + +L+V
Sbjct: 351 VTDNVSQAWLTLFNEAGIEFFGMEAAE---LKRRAQEDPLYIAKLAQGRMNRPVVMRLRV 407
Query: 625 KEETFS------DEQRVKSTVVKAERY----NYSSETR 652
KEET S + R++ +VV+ + S ETR
Sbjct: 408 KEETSSNAMTGEESDRLRMSVVRISEFMPIAGTSEETR 445
>gi|323449521|gb|EGB05408.1| hypothetical protein AURANDRAFT_11223 [Aureococcus anophagefferens]
Length = 366
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 119/375 (31%), Positives = 191/375 (50%), Gaps = 30/375 (8%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
P+A+LNPYM +WT+KA+V K ++ ++N RGDG +F L D+DG EI F +
Sbjct: 1 PVASLNPYMNRWTLKAKVAVKNDIVSWSNARGDGTLFKVTLADADGEEIEAVFFKEACAK 60
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDAS-----IPRQ 335
++ + G +Y S G +KP+ ++ E+ DM S ++ C DAS I
Sbjct: 61 YHAALVEGGVYYFSGGKVKPSNPRYSATKCGYEVTFDMASKIEACA--DASGIGLCIGGT 118
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN--GTETQKRTLHLRDMSGRSVE 393
++ F I+ +E + V+D++ VV A ++ + G KR + L D SG V
Sbjct: 119 KYDFVKISALEQADEGQVIDVLAVVKTAEDCAEVVSQKLGGKTLTKRDVTLVDASGVDVR 178
Query: 394 LTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNG-KVVGTISTTQLFIEP-DFPE 451
LTLWG D P++A+K +VS++ G K +G + ++++ EP D
Sbjct: 179 LTLWGERAKQDQF--------AAAPVVALKGVKVSEYQGTKSLGFLRSSRVAFEPEDAAG 230
Query: 452 AHRLKEWFEKEGKNTQSVSISRDSLSVG-----RADIRKTVSQIKDEG-LGTKEKPDWIT 505
LK W+ G + S S+SR S + G + R+ + +KD+ G +KPD+ T
Sbjct: 231 YEELKAWWANGGASAASTSLSRVSNAGGGLKGEKFADRRGLQDLKDDARFGQGDKPDYAT 290
Query: 506 VSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQ 565
AT++ +K D Y +C GD C KKV DG + C++C + EC+ RYI+
Sbjct: 291 FKATLMKVKEDRLWYESC----GD-GCQKKVTQGTDGTYSCEKCGTTKEECERRYIVSCC 345
Query: 566 IQDHTGLTWVTAFQE 580
D +G +WV+AF +
Sbjct: 346 FVDASGSSWVSAFND 360
>gi|221052666|ref|XP_002261056.1| replication factor a related protein [Plasmodium knowlesi strain H]
gi|194247060|emb|CAQ38244.1| replication factor a related protein [Plasmodium knowlesi strain H]
Length = 1191
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 144/477 (30%), Positives = 242/477 (50%), Gaps = 62/477 (12%)
Query: 195 APYMQ--SPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRG 252
APY Q +P + N G+ ++ I L+ Y KW IKARV K +R Y +
Sbjct: 696 APYQQGNNPVIKINDGI---------LMHINKLSQYSSKWIIKARVQFKDVVRKYYSGNK 746
Query: 253 DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDL 312
+GKVF+ +L D DG EI+V F D++Y ++ GKIY +S+G +K A K F + +D
Sbjct: 747 EGKVFNIELCDEDG-EIKVNFFGKAVDKWYDYLQLGKIYKISKGYIKAANKKFTTIKHDY 805
Query: 313 EIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMR 371
EI LD S+++ E+D +IP+ ++F I +++ ++ S+VD+IGVV SY T L++
Sbjct: 806 EITLDENSIIEALEEND-NIPKFIYNFTSIENIKNLKVGSLVDVIGVVFSYQESTQILIK 864
Query: 372 KNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQ--HMCDSGVFPILAVKAGRVSD 429
K G +KR + L D S ++ +TLWG D L ++ ++ D+ I+ K +V +
Sbjct: 865 KTGQYKEKRDIILIDDSKETINVTLWG----DHALNIEEGYLKDNS---IICFKNLKVGE 917
Query: 430 FNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVG----RADIRK 485
+ G + + T++ I P+ A L+ W+ +N S S+++G +++K
Sbjct: 918 WQGIKLESHPKTKIDINPEIDRAQMLQTWWRNNKQNLYS------SVNIGSGIFHMELQK 971
Query: 486 TVSQI-KDEGLGTKE----KPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNN- 539
T+ +I KD L ++ K T I +I Y+ACP CNKK+++N
Sbjct: 972 TIEEIKKDVNLANEDALSGKGIIFTTFGFIDHIYNSMPVYSACP------DCNKKMISNV 1025
Query: 540 -------------GDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM 586
D +C +C+++ Y Y + +I D T TAF CA IM
Sbjct: 1026 VEEEEDDMNSPQMMDQSMYCSKCNKNNTPT-YSYFINLKITDSTDSLRATAFAGCARTIM 1084
Query: 587 -GMSAKDLYSLK--YVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVV 640
G+SA + +L+ YV Q + + +++ A ++ F++K + DE + K T+V
Sbjct: 1085 NGLSANEFMALRQEYVTQENIENFDLIEKAKLNEFFFRIKAYMTSHMDELKKKYTIV 1141
>gi|224139098|ref|XP_002326767.1| predicted protein [Populus trichocarpa]
gi|222834089|gb|EEE72566.1| predicted protein [Populus trichocarpa]
Length = 122
Score = 193 bits (491), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 86/122 (70%), Positives = 101/122 (82%)
Query: 203 MYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL 262
MY+NRG V ++E P RI+PI ALNPY G+WTIKAR KGELRHYNN RGD KV DLL
Sbjct: 1 MYSNRGSVARNEAPPRIVPITALNPYHGRWTIKARAMTKGELRHYNNTRGDSKVLSSDLL 60
Query: 263 DSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMV 322
D DGGEIR TC N VADQFY+Q+EAG+IYL+S+G+LKPAQ+NFNHL +DLEIFL+ TS +
Sbjct: 61 DCDGGEIRATCSNQVADQFYNQIEAGRIYLISKGNLKPAQRNFNHLRHDLEIFLESTSTI 120
Query: 323 QL 324
QL
Sbjct: 121 QL 122
>gi|68077039|ref|XP_680439.1| replication factor a protein [Plasmodium berghei strain ANKA]
gi|56501369|emb|CAI04746.1| replication factor a protein, putative [Plasmodium berghei]
Length = 1169
Score = 193 bits (491), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 138/472 (29%), Positives = 248/472 (52%), Gaps = 47/472 (9%)
Query: 196 PYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGK 255
PY S + N G+ ++PI L+ Y KW IKARV +K +R + +GK
Sbjct: 693 PYPNSAVIKINDGI---------LMPINKLSQYSTKWIIKARVQSKDNIRKFYTGNKEGK 743
Query: 256 VFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIF 315
VF+ +L D + GEI+V F D++Y +E GKIY +S+G++K A K FN L +D EI
Sbjct: 744 VFNIELCD-ESGEIKVNVFGKAVDKWYDYLEVGKIYKISKGNIKSANKKFNTLKHDCEIT 802
Query: 316 LDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENN-SVVDLIGVV-SYISPTASLMRKN 373
LD S+++L E+D +IP+ ++F PIN+++ N ++VD+IGVV S+ L++K
Sbjct: 803 LDENSILELLEENDMNIPKYIYNFYPINEIKANLNTGTLVDVIGVVLSFQELNQILIKKT 862
Query: 374 GTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGK 433
G +K+ L L D + ++ +TLWG ++ ++++ M + I+ K +V ++ GK
Sbjct: 863 GQYKEKKDLMLIDETNETINVTLWG----ENAVKMEEM-NITENCIICFKCLKVGEWQGK 917
Query: 434 VVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNT---QSVSISRDSLSVGRADIRKTVSQI 490
+ + T++ I P+ +A+ LK W+ KN +++ + + ++ + +KT+ +I
Sbjct: 918 KLESHPKTKVEINPELDKAYTLKNWWINNKKNVYNTINLTTTTSNNNMLNLESQKTIQEI 977
Query: 491 KDE-GLGTKE----KPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKK----VMNNGD 541
K L +E K T I +I Y+ACP CNKK V+ +G+
Sbjct: 978 KKNVNLANEEVLSGKGIIFTTFGFIDHIYNAIPVYSACP------NCNKKMVATVIEDGE 1031
Query: 542 --------GRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM-GMSAKD 592
+C +C+++ + Y Y + +I D+T V+AF A+ IM G+SA++
Sbjct: 1032 EDMDQNVSESMYCAKCNKNNIPV-YNYSINLKITDNTDSLRVSAFANSAKTIMNGLSAEE 1090
Query: 593 LYSLK--YVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKA 642
L+ Y+ Q + + +++ A ++ F++K + DE + T+++
Sbjct: 1091 FMKLRQEYISQENIENFDLIEKAKLNEFFFRIKAYMTSHMDEIKKNYTILET 1142
>gi|402592315|gb|EJW86244.1| hypothetical protein WUBG_02846 [Wuchereria bancrofti]
Length = 613
Score = 193 bits (490), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 182/658 (27%), Positives = 301/658 (45%), Gaps = 98/658 (14%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGML--ATQRNELVTSGLLQIGS 59
PV+QV++ + +V+ Q + + Q FR +SDG S L A+ + T L Q
Sbjct: 25 PVIQVLEARPLVNSQAESAS-EAQYFRFRISDGMFSYNSCLNQASITERIKTDALDQGNP 83
Query: 60 VVRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
V+R+ K+T Q ++ I MD +++ G+ +P V GNP
Sbjct: 84 VLRI-KYTIKTAQKPLLRI-MDYEIL-------GRDLP------------VFGNP----- 117
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
+ H N P D L PN A+ N R
Sbjct: 118 ---VHHSGN------PSDYRG----------LNPN-----------------ANMHNTRL 141
Query: 180 EFSRPYASNYARTPQAPYMQSPS---MYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKA 236
E P + AP S S AN LVG++ + PI + PY+ KW I
Sbjct: 142 ELRSPQKGSSTSGQNAPLRCSGSSSRRLAN--LVGQN-----LTPIKLITPYVNKWRICG 194
Query: 237 RVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG 296
VTAK +LR+ R D KVF+F+L D +GG IR+ F+ VA++FY ++ G ++ VS G
Sbjct: 195 VVTAKEDLRNIRTVRRDMKVFNFELTDEEGGCIRIAAFDDVAEEFYSIIQKGSMFYVSGG 254
Query: 297 SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE-DDASIPRQQFHFRPINDVEGMENNSVVD 355
++K A K FN +D EI + S V C + + P+ + +V S +D
Sbjct: 255 TVKQANKRFNTTGHDYEITIRSDSEVSPCLDREKIEQPKLSLSIVRLCNVANHVGES-ID 313
Query: 356 LIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDS 414
+I +V ++ + +N GT+ +KR + L D S + LT WG + RL
Sbjct: 314 IIAIVEKVNDIMQVTARNTGTQLEKRDIVLIDTSETEITLTFWG-----EQARLYDKEIE 368
Query: 415 GVFPILAVKAGRVSDFNGKV-VGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISR 473
G + +K V +FNG + + T S++++ + D E L +W+ + + Q+ +++
Sbjct: 369 G--QTIGIKGTFVKEFNGNLSLSTASSSRIELNMDCAETASLYKWYRETRPSVQARNLTT 426
Query: 474 DSL---SVGRADIRKTVSQIKDEGLG-TKEKPDWITVSATIVYIKCDNFCYTACPIMIGD 529
L S GR D+R + + GLG EK ++A I +K D Y +C G
Sbjct: 427 TGLTADSYGR-DLR-IIRLSEFCGLGRDSEKGTLFNITAMISSLKADGALYKSC----GT 480
Query: 530 RPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMS 589
C KKV+ + ++ C++CD ++ + Y ++ +I D +G WVT F++ A +++
Sbjct: 481 NGCKKKVI-EINNQYRCEKCDITLDKYKYVLLMTMEISDFSGSHWVTVFEDKAVKLLKSD 539
Query: 590 AKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNY 647
A+ L L D DE + EV F +Y F+++ K E ++ E+++K +V N+
Sbjct: 540 AEQLGQLLDNDLLDE-YNEVFNAVRFREYTFRIRAKSEFYNGEEKIKWSVFDINEVNH 596
>gi|67972174|dbj|BAE02429.1| unnamed protein product [Macaca fascicularis]
Length = 268
Score = 192 bits (487), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 106/272 (38%), Positives = 160/272 (58%), Gaps = 16/272 (5%)
Query: 386 DMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFI 445
D SG+ V TLWG DD + D P+LA+K RVSDF G+ + +S++ +
Sbjct: 2 DTSGKVVTATLWG----DDADKF----DGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIA 53
Query: 446 EPDFPEAHRLKEWFEKEGKNTQSVSISR-DSLSVGRADIR-KTVSQIKDEGLGTKEKPDW 503
PD PEA++L+ WF+ EG+ VSIS S VG + KT+ ++K E LG +KPD+
Sbjct: 54 NPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGGNTNWKTLYEVKSENLGQGDKPDY 113
Query: 504 ITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQ 563
+ AT+VY++ +N Y ACP + CNKKV++ +G + C++CD YR IL
Sbjct: 114 FSSVATVVYLRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILS 169
Query: 564 FQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLK 623
I D WVT FQE AE I+G +A L LK D+N++ F EV +NA F ++F+++
Sbjct: 170 VNIADFQENQWVTCFQESAEAILGQNAAYLGELK--DKNEQAFEEVFQNANFRSFIFRVR 227
Query: 624 VKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
VK ET++DE R+K++V+ + +Y R ++
Sbjct: 228 VKVETYNDESRIKASVMDVKPVDYREYGRRLV 259
>gi|159480170|ref|XP_001698157.1| replication protein A, 70 kDa DNA-binding subunit [Chlamydomonas
reinhardtii]
gi|158273655|gb|EDO99442.1| replication protein A, 70 kDa DNA-binding subunit [Chlamydomonas
reinhardtii]
Length = 647
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 172/672 (25%), Positives = 293/672 (43%), Gaps = 75/672 (11%)
Query: 12 VVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVI 71
VV + + Q+ ++ + +LSDG+ S +G+LA+Q +LV SG L G ++++T F N I
Sbjct: 25 VVLRVSELQEVGGKKHKCMLSDGNNSIRGVLASQFADLVASGELSNGCLIKITAFVTNTI 84
Query: 72 QNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVSLQHHNNTRV 131
+ +V+ DL V+ + V + N P G PQ+ ++ N+
Sbjct: 85 GSDDVVLATDLSVVSPGTGIVKMEVDNALNARNSTP-EAAGKPQAKSSTADPDAKENS-- 141
Query: 132 SQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFSRPYASNYAR 191
P S P P SF +P P P +
Sbjct: 142 ---------TPGPDFKSSKTPGPGLSP-------------VSFFSPAPT---PTGAGIKT 176
Query: 192 TPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQR 251
P P S N IA L+PY W I+A+V K LR + +
Sbjct: 177 APTPPSTMGVSDRKNHH------------KIAQLHPYETNWCIRAKVDRKAPLRALPS-K 223
Query: 252 GDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHND 311
D KV DL+D G I+ T + A++ Q+ GK+Y+ + +KPA K + + N+
Sbjct: 224 PDVKVMTVDLVDETGTAIQGTFWRGPAERMSEQLVEGKVYVFHKFKVKPADKKYVTVKNE 283
Query: 312 LEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDV-EGMENNSVVDLIGVVSYISPTASLM 370
+I T+ V + D+S PI + + + VD++GVV + ++
Sbjct: 284 YQIDFTDTTDVSEAADQDSSAMTTAVEVTPIEQLPRRIGQRAPVDVMGVVLALGSYGTVK 343
Query: 371 RK-NGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSD 429
RK + +E +R + + D SG+SV +TLWG+ + +L+ M V L V RV+D
Sbjct: 344 RKADNSELPRREVTIGDQSGKSVAITLWGDMSSTTAQQLEGMEGRAV---LQVTGCRVTD 400
Query: 430 FNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRAD------- 482
+NG + T+S + I P+ P A ++ W++ N + L + R
Sbjct: 401 YNGCSLSTLSKSVASINPETPAAQQMMLWYKTSEMNPDRFTAVGADLVMARGSQGGSQGG 460
Query: 483 -----IRKTVSQIKD-EGLGTK------EKPDWITVSATIVYIKCD--NFCYTACPIMIG 528
R+ +KD GL + +K + V+A + I D N Y A P
Sbjct: 461 AGGVPARERYFSLKDVSGLTAETEALANDKAIFQNVTACVAMINNDDKNIFYLANP---- 516
Query: 529 DRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGM 588
+KV++ G GR+ + + V + ++RY+L ++ DHTG T V F + AE +MGM
Sbjct: 517 --ENGRKVVDQGGGRFWSEADSKVVEKPEHRYLLSVRLADHTGETNVQLFGKEAEAVMGM 574
Query: 589 SAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYS 648
A +L +LK + E F ++ A + + + K ++ + V+ + K E ++
Sbjct: 575 RADELAALK--EAGGEGFAGALKAAQWKPWQVVVMSKAREYNGNRSVRHSAYKVENIDWV 632
Query: 649 SETRFILDLMDK 660
SE+ ++ L+ K
Sbjct: 633 SESSRLVTLIAK 644
>gi|302817221|ref|XP_002990287.1| hypothetical protein SELMODRAFT_131333 [Selaginella moellendorffii]
gi|300141996|gb|EFJ08702.1| hypothetical protein SELMODRAFT_131333 [Selaginella moellendorffii]
Length = 421
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 205/424 (48%), Gaps = 10/424 (2%)
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
+PI +N + +W+++ARVT KG+L + G V D+ D++ EIR+ F A
Sbjct: 1 MPIKDINDHCYRWSLRARVTHKGKLVFFETGTA-GCVMSVDVADAESSEIRIVGFGENAK 59
Query: 280 QFYHQVEAGKIYLVSRGS-LKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
+ ++E G +Y+ S S ++ ++ + ++ EI T ++ EDD IP
Sbjct: 60 RLSSEIEQGSVYIFSGNSGVQRSKPAYTPYKSNWEIKASKTMEIKR-VEDDLRIPNVVLK 118
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
+ D + + VD+IG V +I + +G ++R L L D SG S+++ LW
Sbjct: 119 RTSVLDASKLSQETFVDVIGGVMWIGQKNISPKDSGAFMRRRMLCLSDESGHSIDMCLWD 178
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEW 458
+ D+G ++ G PI+ VK GR+SD+NGK + + L ++P+ + RL+EW
Sbjct: 179 SKAEDEGSEIEDKLGRGERPIVCVKGGRISDYNGKSISVTGGSTLLVDPELEDVSRLREW 238
Query: 459 FEKEGKNTQSVSISRDSLSVGRADIR--KTVSQIKDEGLGTKEKPDWITVSATIVYIKCD 516
T V ++ S +A I K VS++ L E V ++ I+
Sbjct: 239 MVASYDTTSFVHVTNSS---SKAVISGTKAVSEMLSINLKVSEFSAIFRVIVSVKEIQTG 295
Query: 517 NFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVT 576
+F Y AC ++ R C KKV + W C+ CD + +Y L I D TG W
Sbjct: 296 DFYYPACMKVVNGRQCGKKVTQVSESMWQCNSCDSDSGDIQLKYALHLCILDSTGHIWAV 355
Query: 577 AFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVK 636
AF + A EI+GM A L +L+ D + F ++ + Y K++ K E++ D +++K
Sbjct: 356 AFDDAANEIVGMPACKLAALQ--DDDYTGFSAIMDSIRSKMYNLKVRCKLESYRDTEKLK 413
Query: 637 STVV 640
+V
Sbjct: 414 FFIV 417
>gi|170580146|ref|XP_001895135.1| replication factor A 73 kDa subunit [Brugia malayi]
gi|158598024|gb|EDP36015.1| replication factor A 73 kDa subunit, putative [Brugia malayi]
Length = 613
Score = 189 bits (481), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 180/659 (27%), Positives = 304/659 (46%), Gaps = 100/659 (15%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGML--ATQRNELVTSGLLQIGS 59
PV+QV++ + +V+ Q + + Q FR +SDG S L A+ + T L Q
Sbjct: 25 PVIQVLEARPLVNSQAESAS-EAQYFRFRISDGMFSYNSCLNQASITERIKTDALDQGNP 83
Query: 60 VVRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
V+R+ K+T Q ++ I MD +++ G+ +P V GNP
Sbjct: 84 VLRI-KYTIKAAQKPLLRI-MDYEIL-------GRDLP------------VFGNP----- 117
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
+ H N P D L PN A+ N RP
Sbjct: 118 ---VHHSGN------PNDYRG----------LNPN-----------------ANMHNTRP 141
Query: 180 EFSRPY---ASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKA 236
E P +++ TP S AN LVG++ + PI + PY+ KW I
Sbjct: 142 ELRSPQKGGSTSGQNTPLRYGGSSSRRLAN--LVGQN-----LTPIKLITPYVNKWRICG 194
Query: 237 RVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG 296
VTAK +LR+ R D KVF+F+L D +GG IR+ F+ VA++FY ++ G ++ VS G
Sbjct: 195 VVTAKEDLRNIRTVRRDMKVFNFELTDEEGGCIRIAAFDDVAEEFYSIIQKGSMFYVSGG 254
Query: 297 SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE-DDASIPRQQFHFRPINDVEGMENNSVVD 355
++K A K FN +D EI + S V C + + P+ + +V S VD
Sbjct: 255 TVKQANKRFNTTGHDYEITIRSDSEVSPCLDREKIEQPKLSLSIVRLCNVANHVGES-VD 313
Query: 356 LIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDS 414
+I +V ++ + +N G + +KR + L D S + LT WG + RL
Sbjct: 314 IIAIVEKVNDIMQVTARNTGAQLEKRDIVLIDASETEITLTFWG-----EQARLYDQEIE 368
Query: 415 GVFPILAVKAGRVSDFNGKV-VGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISR 473
G + +K V +FNG + + T +++++ + + E L +W+ + + Q+ +++
Sbjct: 369 G--QTIGIKGAFVKEFNGSLSLSTGNSSRIELNMECAETANLYKWYRETRPSIQARNLTT 426
Query: 474 DSL---SVGRADIRKTVSQIKDEGLG-TKEKPDWITVSATIVYIKCDNFCYTACPIMIGD 529
L S GR D+R + + GLG EK + ++A I +K D Y +C G
Sbjct: 427 TGLTTDSYGR-DLR-IICLSEFCGLGRDSEKGTFFNITAMISSLKADGALYKSC----GT 480
Query: 530 RPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMS 589
C KKV+ + ++ C++CD ++ + Y ++ +I D +G WVT F++ A +++
Sbjct: 481 NGCKKKVI-EINNQYRCEKCDITLDKYKYVLLMTMEISDFSGSHWVTVFEDKAVKLLKTD 539
Query: 590 AKDLYSLKYVDQN-DEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNY 647
A+ L L +D N +++ EV F +Y F+++ K E ++ E++ K +V NY
Sbjct: 540 AEQLGQL--LDNNLLDEYNEVFNAVRFREYTFRIRAKSEFYNGEEKNKWSVFDINEVNY 596
>gi|82539990|ref|XP_724343.1| replication A protein [Plasmodium yoelii yoelii 17XNL]
gi|23478957|gb|EAA15908.1| putative replication A protein [Plasmodium yoelii yoelii]
Length = 1168
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 135/472 (28%), Positives = 247/472 (52%), Gaps = 47/472 (9%)
Query: 196 PYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGK 255
PY S + N G+ ++PI L+ Y KW IKARV +K +R + +GK
Sbjct: 692 PYPNSAVIKINDGI---------LMPINKLSQYSTKWIIKARVQSKDNIRKFYTGNKEGK 742
Query: 256 VFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIF 315
VF+ +L D + GEI+V F D++Y +E GKIY +S+G++K A K FN L +D EI
Sbjct: 743 VFNIELCD-ESGEIKVNFFGKAVDKWYDYLEVGKIYKISKGNIKSANKKFNTLKHDCEIT 801
Query: 316 LDMTSMVQLCYEDDASIPRQQFHFRPINDVEG-MENNSVVDLIGVV-SYISPTASLMRKN 373
LD S+++L E+D +IP+ ++F I++++ M ++VD+IG+V S+ L++K
Sbjct: 802 LDENSILELLEENDMNIPKYIYNFYSISEIKANMNTGTLVDVIGIVLSFQELNQILIKKT 861
Query: 374 GTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGK 433
G +K+ L L D + ++ +TLWG ++ ++++ M + I+ K +V ++ GK
Sbjct: 862 GQYKEKKDLMLIDETNETINVTLWG----ENAVKMEEM-NITENCIICFKCLKVGEWQGK 916
Query: 434 VVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNT---QSVSISRDSLSVGRADIRKTVSQI 490
+ + T++ I P+ +A+ LK W+ KN +++ + + ++ + +KT+ +I
Sbjct: 917 KLESHPKTKVEINPELDKAYTLKNWWVNNKKNVYNTINLTTTTSNNNMLNLESQKTIQEI 976
Query: 491 KDE-GLGTKE----KPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKK----VMNNGD 541
K L +E K T I +I Y+ACP CNKK V+ +G+
Sbjct: 977 KKNVNLANEEVLSGKGIIFTTFGFIDHIYNAIPVYSACP------NCNKKMVATVIEDGE 1030
Query: 542 --------GRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM-GMSAKD 592
+C +C+++ + Y Y + +I D+T V+AF A+ IM G+SA++
Sbjct: 1031 QDMDQNVSESMYCAKCNKNNIPV-YNYSINLKITDNTDSLRVSAFANSAKTIMNGLSAEE 1089
Query: 593 LYSLK--YVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKA 642
L+ Y+ Q + + +++ A ++ F++K + DE + T+++
Sbjct: 1090 FMKLRQEYISQENIENFDLIEKAKLNEFFFRIKAYMTSHMDEIKKNYTILET 1141
>gi|124505339|ref|XP_001351411.1| replication factor a protein, putative [Plasmodium falciparum 3D7]
gi|6562734|emb|CAB62873.1| replication factor a protein, putative [Plasmodium falciparum 3D7]
Length = 1145
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 134/470 (28%), Positives = 240/470 (51%), Gaps = 49/470 (10%)
Query: 195 APYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDG 254
PY + + N G+ ++ I L+ Y KW IKARV +K +R Y + +G
Sbjct: 668 TPYQSNAVIKMNDGI---------LMQINKLSQYSSKWIIKARVQSKDNIRRYTSGSKEG 718
Query: 255 KVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEI 314
KVF+ +L D DG EI+ F D+++ +E GKIY +S+G +K A K FN L++D EI
Sbjct: 719 KVFNIELCDEDG-EIKANFFGKAVDKWFDFIEVGKIYKISKGMIKVANKKFNTLNHDYEI 777
Query: 315 FLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKN 373
LD S++++ E++ +IP+ ++F I++++ M S VD+I VV +Y ++K
Sbjct: 778 TLDENSLIEILDEENENIPKYNYNFISIDNIKNMNTGSFVDIIAVVLNYQEKMQIFVKKT 837
Query: 374 GTETQKRTLHLRDMSGRSVELTLW-GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNG 432
G KR + L D S ++++TLW N D + L+ C I+ K ++ ++ G
Sbjct: 838 GQYKDKRDVTLIDESFDTIQVTLWEKNATIIDEMNLRDNC------IVCFKYLKIGEWQG 891
Query: 433 KVVGTISTTQLFIEPD-FPEAHRLKEWFEKEGKNT-QSVSISRDSLSVGR----ADIRKT 486
K + + + T++ I PD +A+ LK W+ K S+++S + +++ +I+K
Sbjct: 892 KKLESHARTKIEINPDNIEKAYILKNWWIHNKKMICNSINLSSNYINIETQKTIQEIKKN 951
Query: 487 VSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNG--DGRW 544
V+ + +E L K T I I + Y+ACP CNKK+++N D +
Sbjct: 952 VNLVNEEALSG--KGIMFTTYGFIDQIYNNMPVYSACP------DCNKKMISNSVDDNEY 1003
Query: 545 -----------HCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM-GMSAKD 592
+C +C+++ + Y Y + +I D T +AF CA+ IM G+SA++
Sbjct: 1004 EPSSNLLEETMYCAKCNKNNIPV-YNYYINLKITDSTDSIRASAFANCAKIIMNGLSAEE 1062
Query: 593 LYSLK--YVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVV 640
L+ Y+ Q + + +++ ++ F++KV + DE + T++
Sbjct: 1063 YMKLRQEYIMQENIENFDIIEKIKLNEFFFRIKVYMTSHMDELKKNYTII 1112
>gi|320168096|gb|EFW44995.1| replication protein A [Capsaspora owczarzaki ATCC 30864]
Length = 688
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 186/674 (27%), Positives = 292/674 (43%), Gaps = 96/674 (14%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRS-QQGMLATQRNELVTSGLLQIGSV 60
PVLQ++ +K + S R R+V+SDG Q +L T E+ + + +V
Sbjct: 27 PVLQILSIKKLTSNGTTPGD----RHRVVISDGVHHYMQALLGTSLAEVAKTDAITRFTV 82
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQ-RPSSNEQPGSVTGNPQSNAT 119
VR+ KF C+ + R IVI+MD+D++ IG P P + P + G ++
Sbjct: 83 VRVKKFVCSPVVERTIVILMDVDILGTPAGKIGDPKPYEVAPDAGAVAGGAAAGAPTSPA 142
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
G + + V R Y GA + +F + AS PR
Sbjct: 143 GAT---NGAAAPVGAAPAAPKVSPYRQ--------YTDAATGAVTSAFGARVAS--PPRA 189
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAAL-NPYMGKWTIKARV 238
+ S P A P Q +V + + P +PIA + N K+ I+ARV
Sbjct: 190 QQSFP-----AFDPNKTLEQ---------IVAEGQTP-ETLPIAYIYNTMPSKFIIRARV 234
Query: 239 TAKGELRHY-------NNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIY 291
T K +R + NNQ G G+V DL D D EIR T FN D + +E GK Y
Sbjct: 235 TLKHPVREFARKNPGPNNQSG-GRVCSIDLKD-DSSEIRATAFNEQIDTIINSLEVGKAY 292
Query: 292 LVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENN 351
S+ S+KPA + +N L +D E+ + + C+ D+A++P+ ++F + +E +
Sbjct: 293 YFSKMSVKPANRMYNTLPSDYELTFEKGTQWVPCH-DEANLPQVVYNFVRFDGLETL-GE 350
Query: 352 SVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHM 411
VDLIG+ ++ K KR L L D S R + +TLW + Q
Sbjct: 351 QTVDLIGICKSARDVQTITTKQQKSVPKRELTLVDQSQREITVTLWNTQATN--FDEQVA 408
Query: 412 CDSGVFPILAVKAGRVSDFNG-KVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNT--QS 468
D+ V LA + +++DF+G K IS++ + +EPD PE L+ WF+ EG+N Q
Sbjct: 409 VDNRV---LAFRKVKLTDFSGVKSASCISSSAMEVEPDMPETQELRAWFDSEGRNQSFQQ 465
Query: 469 VSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCD------------ 516
V+ + S G D+ T QI +K ++ + T+ ++K
Sbjct: 466 VTGGAGAYSGGNRDL-ATFQQINSNHSLGADKAEYARLQGTVTFLKTKFDDKSGSNDGSV 524
Query: 517 NFCYTAC-----PIMIGDRP-------------CNKKVMNNGDGRWHCDRCDQSVVECDY 558
Y AC PI G C KK + G+ C Q + C+
Sbjct: 525 GMYYYACGNIKQPIDNGQAAAPNSRQQAQQPSVCGKK-LAIGEQCPTCGDVSQRISGCN- 582
Query: 559 RYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQ-----NDEKFGEVVRNA 613
L F D TG W+TAF++ A+ I+G S KDL +L+++ + E+ + A
Sbjct: 583 ---LTFVADDSTGSQWITAFRDTAQTILGASNKDL-TLEHLHELALNGEQEQLDSIYAQA 638
Query: 614 TFTKYLFKLKVKEE 627
Y L++K+E
Sbjct: 639 LHHPYEMTLRIKQE 652
>gi|72168826|ref|XP_786722.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Strongylocentrotus purpuratus]
Length = 305
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 112/309 (36%), Positives = 170/309 (55%), Gaps = 18/309 (5%)
Query: 355 DLIGVVSYISP-TASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCD 413
++IGV S TA ++ + E KR+L L D S + V LTLWG D D
Sbjct: 3 NVIGVCKSTSDLTAVTIKSSNREVNKRSLQLVDDSQKEVSLTLWGKEAED--------FD 54
Query: 414 SGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEG--KNTQSVSI 471
P++AVK R+S F G+ + + + + PD P+AH LK WF+ EG +++QS+S
Sbjct: 55 GSGNPVIAVKGARLSGFGGRSLSVLQNSIFQVNPDIPKAHHLKGWFDSEGHSQDSQSIST 114
Query: 472 SRDSLSVGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDR 530
+ S G A+ T + + LG EKPD+ TV TI++++ +N Y ACP
Sbjct: 115 RQGSGGGGGANTNWMTFHDVHAQNLGQGEKPDYFTVKGTILFVRKENCMYMACP----SA 170
Query: 531 PCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSA 590
CNKKV NGDG + C++C + YR +L + D T W T FQE AE+++ SA
Sbjct: 171 ECNKKVSENGDGSYRCEKCSKDYENFKYRLLLSANVADSTDNQWATCFQETAEQLLLKSA 230
Query: 591 KDLYSLKYVDQNDEK-FGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSS 649
++L SLK + EK F +V ++A F Y+F++++K ET+++E R+K T V A+ N
Sbjct: 231 QELGSLKDQGEATEKEFNQVFQDACFIDYMFRMRIKMETYNEEARLKCTCVSAQPINVRD 290
Query: 650 ET-RFILDL 657
T + I D+
Sbjct: 291 YTNKLIKDI 299
>gi|428166243|gb|EKX35222.1| replication protein A1, 70kDa, partial [Guillardia theta CCMP2712]
Length = 439
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 136/447 (30%), Positives = 226/447 (50%), Gaps = 27/447 (6%)
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVA 278
+PIA ++PY G +KA++ +K ++R + + D VF +LD D +++VT +N
Sbjct: 1 VPIAMIHPY-GSCNVKAKLISKEDVRRFKGRNNTDMAVFSAVVLD-DSSDMKVTFWNEQC 58
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
++++ + G+ Y+ S+GS K AQ +N+ E+ + + ++ C E+DA +
Sbjct: 59 EKYHDSLVVGQWYVFSKGSFKVAQSKYNNTKCQYEMTVSTNTTIERCLEEDAPQVCISLY 118
Query: 339 FRPINDVEGMENN-SVVDLIGVVSYISPTASLM----RKNGTETQKRTLHLRDMSGRSVE 393
+N + + N VD+IGVV + + R +G + KR + L D SG++V
Sbjct: 119 MIEVNCLLVEKGNLQNVDVIGVVQEVEALGEITIKQGRDSGKQKSKRNVSLVDKSGKTVS 178
Query: 394 LTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAH 453
+TLW N + + H + ILAV+ RVSD+NG + T+ ++ L I P+ PEA
Sbjct: 179 ITLWDN--HAEQFDTSHATNHS---ILAVRGARVSDYNGCSLSTLRSSMLQINPETPEAK 233
Query: 454 RLKEWFEK--EGKNTQSVSI-SRDSLSVGRADIRKTVSQIKDEGLGTK-EKPDWITVSAT 509
L+EW+ GK+ Q V ++ G RK + + E LG+ K D T+ A
Sbjct: 234 DLREWYSSCDSGKSFQPVGEGTQAGKGPGGPAPRKLIEAVSKESLGSNTSKADIFTIKAY 293
Query: 510 IVYIKCDN-FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQD 568
+ Y + + Y A P KKV+ +GD W + + C RYI F D
Sbjct: 294 VTYSNTEKQWQYPANP------ENKKKVVASGD-VWIDESTGTQIDTCQRRYITTFAFMD 346
Query: 569 HTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEET 628
TG W+T F E A+ I+G SA +LY ++ D+ F V + A F +Y+ K++ K E
Sbjct: 347 LTGRQWLTCFDEHAQLILGKSADELYEIECTDK--VAFEGVWKAAYFKEYMIKVRAKAEE 404
Query: 629 FSDEQRVKSTVVKAERYNYSSETRFIL 655
+ E R K +V+ E NY SE++ ++
Sbjct: 405 YKGETRTKFSVMSLEPVNYVSESQHLI 431
>gi|294949396|ref|XP_002786176.1| Replication protein A 70 kDa DNA-binding subunit, putative
[Perkinsus marinus ATCC 50983]
gi|239900333|gb|EER17972.1| Replication protein A 70 kDa DNA-binding subunit, putative
[Perkinsus marinus ATCC 50983]
Length = 479
Score = 186 bits (471), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 135/457 (29%), Positives = 227/457 (49%), Gaps = 41/457 (8%)
Query: 220 IPIAALNPY-MGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
PI ++ Y + WTIKARVTAK +RH+ N RG G VF DLLD +G EIR + FNA A
Sbjct: 5 FPIREISSYSVRNWTIKARVTAKSPVRHFTNARGGGSVFSVDLLDKEGSEIRGSFFNAAA 64
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYED-DASIPRQQF 337
++F ++ GK+Y S+G++K A K ++ +++ EI + S + +D D I + ++
Sbjct: 65 EKFDKLLQKGKVYTFSKGNVKVANKRYSSCNHNYEIVFEEDSQIVEVQDDVDDHIDKIKY 124
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLW 397
F P+ +++ S VDL+ V+ P ++ KNG E +R L + D SG V++T W
Sbjct: 125 SFCPVRELKSKSVPSTVDLLVVIKDHRPAGTVNSKNGAELFRRNLTVCDESGCCVDVTFW 184
Query: 398 GNFCNDDGLRLQHMCDSGVF---PILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
+ N + D V P++A+K V D+ G+ T+++TQ+ + PD PEA +
Sbjct: 185 NDLVN--------VVDESVLQTQPVVAMKGVSVRDYGGRSCSTLNSTQIEVNPDIPEAKQ 236
Query: 455 LKEWFEKEGKNTQSVSISRDSLSV----GRADIRK--TVSQIKDE----GLGTKEKPDWI 504
LK W+ G + ++S+ SV G+ + K T++++K++ LG I
Sbjct: 237 LKIWWANTGCSMAFTNLSQQGTSVPGSGGQTMVTKEMTIAEMKNDVKNMDLGGSMHSYEI 296
Query: 505 TVSATIVYIKCDN-----FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYR 559
V + + Y AC CN+K+ DG C C++ V R
Sbjct: 297 IGRLQFVTTRGRDGNDIPIFYMAC------ESCNRKMAEGSDG--FCQACNRQV-NVKAR 347
Query: 560 YILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTK-Y 618
Y+L+ Q D T ++T F + A ++G +D + V ++ G ++ + K +
Sbjct: 348 YMLRSQFVDSTDDAYLTCFHDQAHTLIGRPVEDFVMAQDVGKS---AGNELKEHYYDKEW 404
Query: 619 LFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
+++ K ET+ E R + TV E + R +L
Sbjct: 405 KIRVRAKMETYQGEPRPRITVSSLEPMDPKEHCRRLL 441
>gi|302822669|ref|XP_002992991.1| hypothetical protein SELMODRAFT_431158 [Selaginella moellendorffii]
gi|300139191|gb|EFJ05937.1| hypothetical protein SELMODRAFT_431158 [Selaginella moellendorffii]
Length = 390
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 121/378 (32%), Positives = 186/378 (49%), Gaps = 6/378 (1%)
Query: 259 FDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVS-RGSLKPAQKNFNHLHNDLEIFLD 317
FD++D G EIR+ + A ++ G +Y S G ++ + + + EI +
Sbjct: 3 FDVVDVQGTEIRIIGSDDCALVLSDKIVQGTVYSFSGSGGIRRSNQAYTPFEVTWEIQAN 62
Query: 318 MTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTET 377
M ++DA+ PR I E +S VD++G+V +I R +GT
Sbjct: 63 -KGMEFTALDEDATFPRIVLAKTSILSACQKERDSFVDVVGIVIWIGTITVTSRDSGTFV 121
Query: 378 QKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGT 437
+KRTL L D SG SV+L LW ++G +Q DSGV PI+ VK G+VSD+NGK +
Sbjct: 122 KKRTLCLGDDSGHSVDLCLWDLKAEEEGSYIQERIDSGVQPIICVKGGKVSDYNGKSLSA 181
Query: 438 ISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGT 497
I + + IEP+ L+EW T + +S S S T+S+I + L
Sbjct: 182 IGVSTILIEPEMEAVADLREWMTLYYNVTNFIHLSTSS-SRQTVSCTTTLSEISNMQLKV 240
Query: 498 KEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECD 557
E V AT+ +K D F Y AC ++ R C KK DG W C C+ +
Sbjct: 241 LESSPIYRVIATVKEMKTDEFYYNACINVLNARQCGKKTTRTADG-WFCSYCNIESANME 299
Query: 558 YRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTK 617
++Y L+ I+D + W AFQE A+EI+GMSAK+L +++ D+N F ++
Sbjct: 300 FKYALKMCIEDSSSHVWAIAFQEAAQEIVGMSAKELATMR--DENYPAFSLLIDGIRSKI 357
Query: 618 YLFKLKVKEETFSDEQRV 635
Y FK+ K E + D +++
Sbjct: 358 YKFKIWSKLEKYQDMEKL 375
>gi|260793785|ref|XP_002591891.1| hypothetical protein BRAFLDRAFT_89408 [Branchiostoma floridae]
gi|229277103|gb|EEN47902.1| hypothetical protein BRAFLDRAFT_89408 [Branchiostoma floridae]
Length = 265
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/251 (38%), Positives = 148/251 (58%), Gaps = 15/251 (5%)
Query: 387 MSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIE 446
MSG+ V LTLWG + D P++A+K R+SDF G+ + T+ ++ + I
Sbjct: 1 MSGKQVNLTLWGGEADK--------FDGSSSPVVAIKGARLSDFGGRSLSTVGSSTIMIN 52
Query: 447 PDFPEAHRLKEWFEKEGKNTQSVSISRDS-LSVGRADIRKTVSQIKDEGLGTKEKPDWIT 505
PD PEA++L+ W++K G N ++ SIS + GR K+ Q+KDE LGT EKPD+ T
Sbjct: 53 PDIPEAYQLRGWYDKVGCNAEAQSISTGAGGGAGRPTNWKSFQQVKDENLGTGEKPDFFT 112
Query: 506 VSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQ 565
TIV++K +N Y ACP + CNKKV++ +G + C++C + YR IL
Sbjct: 113 TKGTIVFLKKENSMYQACPT----QDCNKKVVDLQNGFFSCEKCSKEFPNFKYRMILSAN 168
Query: 566 IQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVK 625
+ D +G W T FQE AE I+G + + L +LK DQ+D + +V A F Y+F ++VK
Sbjct: 169 VADFSGNQWTTCFQETAETILGQNTEYLGNLK--DQDDTAYDQVFTEANFKSYIFNMRVK 226
Query: 626 EETFSDEQRVK 636
+T++DE R++
Sbjct: 227 MDTYNDESRIR 237
>gi|308502550|ref|XP_003113459.1| CRE-RPA-1 protein [Caenorhabditis remanei]
gi|308263418|gb|EFP07371.1| CRE-RPA-1 protein [Caenorhabditis remanei]
Length = 656
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 153/562 (27%), Positives = 266/562 (47%), Gaps = 55/562 (9%)
Query: 106 QPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSG 165
+P S +GNP+ + + N V L + D+ + PP P+ +G
Sbjct: 137 KPRSHSGNPEEHRG-----YRPNIVVEDLWPEADSWGTEFQENMSNPPAAKMPKRESGGD 191
Query: 166 SFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAAL 225
+ N+ A+ P P+ RP A P A RG + IIPIA +
Sbjct: 192 TSVNRMAA---PEPQRVRP-----APPP-----------ARRGASN-----TGIIPIAMV 227
Query: 226 NPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQV 285
PY+ + I V+ K ++R + + + +VF+F++ D++G IR FN A+ F+ +
Sbjct: 228 TPYVNNFKIHGMVSRKEDIRTFPAK--NTRVFNFEVTDTNGDTIRCCAFNEAAESFFGMI 285
Query: 286 EAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDV 345
Y ++ GS++ A K +N+ +D EI L S+++ E A+ P+ +++V
Sbjct: 286 TENLSYYIAGGSVRQANKRYNNTGHDYEITLRSDSVIEAGGELLAA-PKLNLRRVRLSEV 344
Query: 346 EGMENNSVVDLIGVVSYI--SPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCND 403
G ++D++ VV + PT + G KR + L D S V LTLWG
Sbjct: 345 AG-HCGGLIDVLAVVDKMDDEPT-EFTSRAGKTLVKREMELIDESSAMVRLTLWGEEATK 402
Query: 404 -DGLRLQHMCDSGVFPILAVKAGRVSDFNGK-VVGTISTTQLFIEPDFPEAHRLKEWFEK 461
D Q ++A K +FNG +GT S T++ + PD L +W+
Sbjct: 403 ADAQEYQQ-------KVVAFKGVIPKEFNGGYTLGTGSGTRIILAPDIGGVADLYDWYHN 455
Query: 462 EGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGT-KEKPDWITVSATIVYIKCDNFCY 520
+ + IS+ S G DI +T++ +++ G EK D+ +V A I I +N Y
Sbjct: 456 TKPSAEVKMISQ--TSGGSNDIPRTIAGLQEMQFGKDSEKGDYASVKAMITRINPNNALY 513
Query: 521 TACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQE 580
C C KKV+ DG + C++C++S+ + + Y++QF++ D TG +VTAF +
Sbjct: 514 KGC----ASEGCQKKVVET-DGEYRCEKCNKSMNKFKWLYMMQFELSDETGQVYVTAFGD 568
Query: 581 CAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVV 640
A +++G +A ++ LK ++N E++ V F ++KL+ K ET+++E R K TV
Sbjct: 569 TAAKVVGKTAAEIGDLK--EENPEEYNGVFERIQFAPKMWKLRCKMETYNEETRQKMTVF 626
Query: 641 KAERYNYSSETRFILDLMDKLK 662
+ N + L++++K
Sbjct: 627 GVDEVNQDKYIENLKQLIEQMK 648
>gi|17533299|ref|NP_495606.1| Protein RPA-1 [Caenorhabditis elegans]
gi|2833300|sp|Q19537.1|RFA1_CAEEL RecName: Full=Probable replication factor A 73 kDa subunit;
AltName: Full=RP-A p73; AltName: Full=Replication factor
A protein 1; Short=RF-A protein 1
gi|351018137|emb|CCD62042.1| Protein RPA-1 [Caenorhabditis elegans]
Length = 655
Score = 183 bits (464), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 135/490 (27%), Positives = 244/490 (49%), Gaps = 27/490 (5%)
Query: 177 PRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKA 236
P+ EF + N A P+A ++ A R S ++PIA + PY+ + I
Sbjct: 184 PKREFGEEASYNRAAAPEATRARAVPPPARRT---ASNTERGVMPIAMVTPYVSNFKIHG 240
Query: 237 RVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG 296
V+ K E+R + + + KVF+F++ DS+G IR T FN VA+ Y + Y +S G
Sbjct: 241 MVSRKEEIRTFPAK--NTKVFNFEITDSNGDTIRCTAFNEVAESLYTTITENLSYYLSGG 298
Query: 297 SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDL 356
S+K A K FN+ +D EI L S+++ E A+ P+ + ++ G ++D+
Sbjct: 299 SVKQANKKFNNTGHDYEITLRSDSIIEAGGELLAA-PKLILKRVKLGEIAGYA-GQLIDV 356
Query: 357 IGVVSYISPTAS-LMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSG 415
+ VV + P A+ K G KR + L D SG V LTLWG+ + + D
Sbjct: 357 LVVVEKMDPEATEFTSKAGKSLIKREMELIDESGALVRLTLWGDEAT------KALVDDY 410
Query: 416 VFPILAVKAGRVSDFNGKV-VGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRD 474
V ++A K +FNG +GT S T++ P+ L +W+ T+ +S+
Sbjct: 411 VQKVIAFKGVIPREFNGGFSLGTGSATRIISVPEIAGVSELYDWYANVKPTTEVKMMSQ- 469
Query: 475 SLSVGRADIRKTVSQIKDEGLGT-KEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCN 533
+ G + +T++ +++ G +K D+ TV A I + N Y C C
Sbjct: 470 -AAGGSNEAPRTIAGLQEMQFGKDSDKGDYATVKAMITRVNPTNALYRGC----ASEGCQ 524
Query: 534 KKVM-NNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKD 592
KK++ NGD + C++C++++ + + Y++QF++ D TG +VTAF + A +I+G SA +
Sbjct: 525 KKLVGENGD--YRCEKCNKNMNKFKWLYMMQFELSDETGQVYVTAFGDSAAKIVGKSAAE 582
Query: 593 LYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETR 652
L L D++ +++ + F +++L+ K +++++E R K TV + N
Sbjct: 583 LGELH--DESPDEYNAIFERLQFVPKMWRLRCKMDSYNEEVRQKMTVYGVDDVNQDKYIE 640
Query: 653 FILDLMDKLK 662
+ ++++++
Sbjct: 641 NLKQMIEQMQ 650
>gi|307103509|gb|EFN51768.1| hypothetical protein CHLNCDRAFT_59111, partial [Chlorella
variabilis]
Length = 736
Score = 182 bits (463), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 125/453 (27%), Positives = 211/453 (46%), Gaps = 66/453 (14%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PI+ALNPY W IKA+V +KG R ++ G VF +++D G I T + AD
Sbjct: 166 PISALNPYNNNWAIKAKVVSKGSKRSFSR----GSVFSAEVVDEQGTTIEATFWREAADH 221
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYED-DASIPRQQFHF 339
Y +E GK+Y+ RG++KPA K ++ + ND + D S ++ C +D D S + F
Sbjct: 222 AYELLEEGKVYIFGRGNVKPADKRYSRVRNDYALHFDTASELESCADDIDTSKMHVKMEF 281
Query: 340 RPINDVEG-MENNSVVDLIGVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVELTLW 397
PI + ++ +VD++GVV + P S+ RK + E +R + L D S ++V LT+W
Sbjct: 282 VPIEQLAAFVDKKMMVDIVGVVMDVKPLGSVKRKTDQVELSRRDITLVDQSLKTVVLTMW 341
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKE 457
GN G ++ + P++A+ A + ++ + + I PD PEA L++
Sbjct: 342 GNAAEAAGREIEELVQQA--PVVAITA---------CLSSLQRSAVLINPDVPEAVALRQ 390
Query: 458 WFEKEGKNT-----------------QSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEK 500
W++ G+ S R SL + RA T T++K
Sbjct: 391 WYDSSGRGAAMSHVGEGLATALKHSGSSAGQERASLELFRAAAPAT----------TQDK 440
Query: 501 PDWITVSATIVYIKCDN-FCYTA---------------CPIMIGDRPCNKKVM--NNGDG 542
P + TV+AT + D Y A CP +G C V+ G G
Sbjct: 441 PHYSTVTATFAMVNPDQALFYMANPENNRKASTTAPRLCPGFMG-LLCALCVLVVEQGPG 499
Query: 543 RWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQN 602
++ C+ ++ RYI ++ D +G V F E AE+++ M A +L L+ D
Sbjct: 500 QYFCEYDGTTLSSMVRRYIFNAKVMDVSGECSVQVFNEQAEQLLEMKADELAELRETDA- 558
Query: 603 DEKFGEVVRNATFTKYLFKLKVKEETFSDEQRV 635
++F EV+++ + + +LK + + F ++ +
Sbjct: 559 -KQFQEVLKSVLWKDNVLRLKAQAQCFEEDVEI 590
>gi|341897567|gb|EGT53502.1| hypothetical protein CAEBREN_14752 [Caenorhabditis brenneri]
Length = 658
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 127/456 (27%), Positives = 224/456 (49%), Gaps = 22/456 (4%)
Query: 211 GKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIR 270
G S ++PIA + PY+ + I +T K E+R + + + KVF+F++ DS+G IR
Sbjct: 215 GPSNTERGVMPIAMITPYVNGFKINGTITRKEEIRSFPAK--NTKVFNFEITDSNGDTIR 272
Query: 271 VTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDA 330
FN +A+ Y + Y +S G ++ A K FN+ +D EI L S+V+ D
Sbjct: 273 CVAFNELAESLYSTITENLSYFISNGQVRQANKRFNNTGHDYEINLRNDSIVE-AGGDVV 331
Query: 331 SIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTAS-LMRKNGTETQKRTLHLRDMSG 389
+ P+ + ++ G ++D++ V + P + K G KR + L D SG
Sbjct: 332 AAPKLHLKRISLGEIAG-HCGEMIDVLAYVEKMDPEPTEFTSKAGKTLVKREMELIDESG 390
Query: 390 RSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKV-VGTISTTQLFIEPD 448
V LTLWG + L + + ++A K +FNG +GT +++ P+
Sbjct: 391 AVVRLTLWGEEASKAPL------EDYLHKVVAFKGVIPREFNGGYSLGTGFGSRVIAVPE 444
Query: 449 FPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGT-KEKPDWITVS 507
L EW+ IS+ S S A +T++ +++ G EK D+++V
Sbjct: 445 ISGVAELYEWYNTVKPTVDVKMISQTSGSSSEAP--RTIAGLQEMQFGKDSEKGDYVSVK 502
Query: 508 ATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQ 567
A I I +N Y C C KKV+ + DG + C++C++++ + Y++QF++
Sbjct: 503 AMITRINPNNALYKGC----SSEGCQKKVIES-DGDFRCEKCNKTMRHFKWLYMMQFELS 557
Query: 568 DHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEE 627
D TG +VTAF + A +++G +A ++ LK + N +++ V F +++L+ K E
Sbjct: 558 DETGQVYVTAFGDNATKVVGRTAAEVGELK--EANPDEYNAVFEKLQFIPKMWRLRCKME 615
Query: 628 TFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKS 663
T+++E R K TV E N + L++++KS
Sbjct: 616 TYNEEVRQKMTVFGVEEVNQDKYIENLKQLIEQMKS 651
>gi|403340896|gb|EJY69743.1| Replication protein A 70 kDa DNA-binding subunit, putative
[Oxytricha trifallax]
Length = 636
Score = 182 bits (462), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 120/459 (26%), Positives = 228/459 (49%), Gaps = 34/459 (7%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PI AL+ + W IKARV K E + + N +G+G + + +L+D G +I+ T F A++
Sbjct: 171 PIKALSTFNYDWRIKARVVKKHEKKLWKNSKGEGWIMNIELMDCFGTQIQATFFKDSAER 230
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
F ++ G IYL S GS+K A + + ND + D + + + DD SI + F+F
Sbjct: 231 FDQIIKEGNIYLFSNGSVKLANHKYTQIRNDFTLVFDKNADI-VEVPDDLSIQEKGFNFL 289
Query: 341 PINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNF 400
I D+ +E N ++D+IG++ I P + K G +KR L L D S ++L LWG+
Sbjct: 290 GIKDIMTVEKNKIIDIIGILHQIGPLQEVQTKAGHNKEKRMLTLADESEMIIQLCLWGDM 349
Query: 401 CNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFE 460
+ R M ++ ++A+K G+V D+ GK + + ++ P +L+ W++
Sbjct: 350 AH----RFDMMDETCSNHVIAIKGGKVVDYAGKQLNIHEDAYIMLDIPHPRTEQLRAWYD 405
Query: 461 K-EGKNT-QSVSISRDSLSVGRADIR-----KTVSQIKD---------EGLGTKEKPD-- 502
+ K+ +++ + ++ +A + + ++++ D +G + +
Sbjct: 406 NLQNKDVLKNIVVKKERTENNQAQNKQQENVRMIAEVLDYLNQASQDQSKMGFNQNNNGN 465
Query: 503 ---WITVSATIVYIKCDN-FCYTACPIMIGDRPCNKKVMNNGDGR-WHCDRCDQSVVECD 557
+ V+ I +IK D+ Y ACP + C KKV+ + D + + C+ C+QS C
Sbjct: 466 VFAYFWVNCQISFIKKDDKLYYLACP----EENCRKKVIEDTDSKTFRCESCNQSFQSCV 521
Query: 558 YRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTK 617
Y+L +I D + +V ++E +IM + + + +K +Q +E+ ++ +A F
Sbjct: 522 PTYMLMARIIDQSDSIFVNFYREQGSQIMSVPPEVIRRIKEEEQ-EEQLNDIFIDAQFKP 580
Query: 618 YLFKLKVKEETF-SDEQRVKSTVVKAERYNYSSETRFIL 655
Y +K K+ + D R K ++++Y +E + IL
Sbjct: 581 YQILIKAKQSNYGQDSSRTSFFATKIQQFSYQTENKEIL 619
>gi|403364199|gb|EJY81856.1| Replication protein A 70 kDa DNAbinding subunit puta [Oxytricha
trifallax]
Length = 636
Score = 182 bits (461), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 120/459 (26%), Positives = 228/459 (49%), Gaps = 34/459 (7%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PI AL+ + W IKARV K E + + N +G+G + + +L+D G +I+ T F A++
Sbjct: 171 PIKALSTFNYDWRIKARVVKKHEKKLWKNSKGEGWIMNIELMDCFGTQIQATFFKDSAER 230
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
F ++ G IYL S GS+K A + + ND + D + + + DD SI + F+F
Sbjct: 231 FDQIIKEGNIYLFSNGSVKLANHKYTQIRNDFTLVFDKNADI-VEVPDDLSIQEKGFNFL 289
Query: 341 PINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNF 400
I D+ +E N ++D+IG++ I P + K G +KR L L D S ++L LWG+
Sbjct: 290 GIKDIMTVEKNKIIDIIGILHQIGPLQEVQTKAGHNKEKRMLTLADESEMIIQLCLWGDM 349
Query: 401 CNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFE 460
+ R M ++ ++A+K G+V D+ GK + + ++ P +L+ W++
Sbjct: 350 AH----RFDMMDETCSNHVIAIKGGKVVDYAGKQLNIHEDAYIMLDIPHPRTEQLRAWYD 405
Query: 461 K-EGKNT-QSVSISRDSLSVGRADIR-----KTVSQIKD---------EGLGTKEKPD-- 502
+ K+ +++ + ++ +A + + ++++ D +G + +
Sbjct: 406 NLQNKDVLKNIVVKKERTENNQAQNKQQENVRMIAEVLDYLNQASQDQSKMGFNQNNNGN 465
Query: 503 ---WITVSATIVYIKCDN-FCYTACPIMIGDRPCNKKVMNNGDGR-WHCDRCDQSVVECD 557
+ V+ I +IK D+ Y ACP + C KKV+ + D + + C+ C+QS C
Sbjct: 466 VFAYFWVNCQISFIKKDDKLYYLACP----EENCRKKVIEDTDSKTFRCESCNQSFQSCV 521
Query: 558 YRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTK 617
Y+L +I D + +V ++E +IM + + + +K +Q +E+ ++ +A F
Sbjct: 522 PTYMLMARIIDQSDSIFVNFYREQGSQIMSVPPEVIRRIKEEEQ-EEQLNDIFIDAQFKP 580
Query: 618 YLFKLKVKEETF-SDEQRVKSTVVKAERYNYSSETRFIL 655
Y +K K+ + D R K ++++Y +E + IL
Sbjct: 581 YQILIKAKQSNYGQDSSRTSFFATKIQQFSYQTENKEIL 619
>gi|341899815|gb|EGT55750.1| CBN-RPA-1 protein [Caenorhabditis brenneri]
Length = 658
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 126/456 (27%), Positives = 224/456 (49%), Gaps = 22/456 (4%)
Query: 211 GKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIR 270
G S ++PIA + PY+ + I +T K E+R + + + KVF+F++ DS+G IR
Sbjct: 215 GPSNTERGVMPIAMITPYVNGFKINGTITRKEEIRSFPAK--NTKVFNFEITDSNGDTIR 272
Query: 271 VTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDA 330
FN +A+ Y + Y ++ G ++ A K FN+ +D EI L S+V+ D
Sbjct: 273 CVAFNELAESLYSTITENLSYFITNGQVRQANKRFNNTGHDYEINLRNDSIVE-AGGDVV 331
Query: 331 SIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTAS-LMRKNGTETQKRTLHLRDMSG 389
+ P+ + ++ G ++D++ V + P + K G KR + L D SG
Sbjct: 332 AAPKLHLKRISLGEIAG-HCGEMIDVLAYVEKMDPEPTEFTSKAGKTLVKREMELIDESG 390
Query: 390 RSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKV-VGTISTTQLFIEPD 448
V LTLWG + L + + ++A K +FNG +GT +++ P+
Sbjct: 391 AVVRLTLWGEEASKAPL------EDYLHKVVAFKGVIPREFNGGYSLGTGFGSRVIAVPE 444
Query: 449 FPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGT-KEKPDWITVS 507
L EW+ IS+ S S A +T++ +++ G EK D+++V
Sbjct: 445 ISGVAELYEWYNTVKPTVDVKMISQTSGSSSEAP--RTIAGLQEMQFGKDSEKGDYVSVK 502
Query: 508 ATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQ 567
A I I +N Y C C KKV+ + DG + C++C++++ + Y++QF++
Sbjct: 503 AMITRINPNNALYKGC----SSEGCQKKVIES-DGDFRCEKCNKTMRHFKWLYMMQFELS 557
Query: 568 DHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEE 627
D TG +VTAF + A +++G +A ++ LK + N +++ V F +++L+ K E
Sbjct: 558 DETGQVYVTAFGDNATKVVGRTAAEVGELK--EANPDEYNAVFEKLQFIPKMWRLRCKME 615
Query: 628 TFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKS 663
T+++E R K TV E N + L++++KS
Sbjct: 616 TYNEEVRQKMTVFGVEEVNQDKYIENLKQLIEQMKS 651
>gi|302795292|ref|XP_002979409.1| hypothetical protein SELMODRAFT_419097 [Selaginella moellendorffii]
gi|300152657|gb|EFJ19298.1| hypothetical protein SELMODRAFT_419097 [Selaginella moellendorffii]
Length = 389
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 190/382 (49%), Gaps = 15/382 (3%)
Query: 259 FDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVS-RGSLKPAQKNFNHLHNDLEIF-- 315
FD++D G EIR+ + A ++ G +Y S G ++ + + + EI
Sbjct: 3 FDVVDVQGTEIRIIGSDDCALVLSDKIVQGIVYSFSGSGGIRRSNQAYTPFEVTWEIQAN 62
Query: 316 --LDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN 373
++ T++ ++DA+ PR I E +S VD++G+V +I R +
Sbjct: 63 KGMEFTAL-----DEDATFPRIVLAKTSILSACQKERDSFVDVVGIVIWIGTITVTSRDS 117
Query: 374 GTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGK 433
GT +KRTL L D SG SV+L LW ++G +Q DSGV PI+ VK G+VSD+NGK
Sbjct: 118 GTFVKKRTLCLGDDSGHSVDLCLWDLKAEEEGSYIQERIDSGVQPIICVKGGKVSDYNGK 177
Query: 434 VVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDE 493
+ I + + IEP+ L+EW T + +S S S T+S+I +
Sbjct: 178 SLSAIGVSTILIEPEMEAVADLREWMTLYYNVTNFIHLSTSS-SRQTVSCTTTLSEISNM 236
Query: 494 GLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSV 553
L E V AT+ +K D F Y AC ++ R C KK DG W C C+
Sbjct: 237 QLKVLESSPIYRVIATVKEMKTDEFYYNACINVVNARQCGKKTTRTADG-WFCSYCNIES 295
Query: 554 VECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNA 613
+++Y L+ I+D + + W AFQE A+EI+GMSAK+L +++ D+N F ++
Sbjct: 296 ANMEFKYALKMCIEDSSHV-WAIAFQEAAQEIVGMSAKELATMR--DENYPAFSLLIDGI 352
Query: 614 TFTKYLFKLKVKEETFSDEQRV 635
Y FK+ K E + D +++
Sbjct: 353 RSKIYKFKIWSKLEKYQDMEKL 374
>gi|359475570|ref|XP_003631705.1| PREDICTED: LOW QUALITY PROTEIN: replication factor A protein 1-like
[Vitis vinifera]
Length = 389
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/388 (28%), Positives = 202/388 (52%), Gaps = 18/388 (4%)
Query: 286 EAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDV 345
+ GK+Y + +G+LK A K F + ND + L+ S V+ ++ IP +F F I ++
Sbjct: 8 QLGKVYYIXKGALKVANKQFKTVQNDYGMTLNENSEVEEASNEETFIPEAKFKFLXIEEL 67
Query: 346 EGMEN-NSVVDLIGVVSYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVELTLWGNFCND 403
N +VD+ GVV +SPT ++ RK+ E KR + + D S +SV ++LW + +
Sbjct: 68 GPYVNGKELVDVSGVVQSVSPTMTIRRKSTNEIVPKRDITIADKSKKSVVVSLWNDHATN 127
Query: 404 DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWF-EKE 462
G L D FPI+A+K+ +V DF G + T+S + + PD PE+ +L+ W+ +
Sbjct: 128 VGXELLDNADK--FPIIAIKSLKVGDFQGVSLSTLSKSIALVNPDTPESKKLRSWYHDYH 185
Query: 463 GKNTQSVSISRDSLSVGRADIRK------TVSQIKDEGLGTKEKPDWITVSATIVYIKCD 516
GK I D + +R ++S + ++KP + ++ A I +IK +
Sbjct: 186 GKVASMACIGSDISPSSKGGVRSMYYDRVSLSHVTSNPSLGEDKPSFFSIRAYISFIKPE 245
Query: 517 -NFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWV 575
Y AC + CNKKV + + + C+ C+++ EC RYI+ ++ D +G +
Sbjct: 246 QTMWYQAC------KTCNKKVTDAIESGYWCEGCEKNDDECSXRYIMVVKVSDDSGEACL 299
Query: 576 TAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRV 635
F E AE I G SA +L LK + + +F + ++ A + +LF++ V + + +E+R
Sbjct: 300 ALFNEQAERIFGCSADELDKLKSQEGEENRFQQKLKEAIWVPHLFRISVAQHEYMNEKRQ 359
Query: 636 KSTVVKAERYNYSSETRFILDLMDKLKS 663
T ++++E+R +L+ + K+K+
Sbjct: 360 WITARAVVAVDFAAESRLLLEEISKMKT 387
>gi|403361002|gb|EJY80197.1| Replication factor-A protein [Oxytricha trifallax]
Length = 701
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 126/463 (27%), Positives = 230/463 (49%), Gaps = 45/463 (9%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PI +LN ++ W IKARVT K +L+ + N + +G V + +L+D+ G I T +N A +
Sbjct: 240 PIKSLNAFLFDWKIKARVTKKCDLKTWKNAKSEGHVMNVELIDNLGTLILATFYNDAALK 299
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
+ ++ +YL+S GS+K A K F + ND I D +S ++ EDD++I +Q F+F
Sbjct: 300 YNEMLQENHVYLMSNGSVKIANKKFTSIKNDYCIVFDKSSDIKEV-EDDSNIQQQGFNFV 358
Query: 341 PINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLWGN 399
I+++ E + VD +GV++ + +S KN G KR+L + D SG ++ +TLWG
Sbjct: 359 TIDEINDFEQSRTVDTVGVITQVGQLSSFQPKNGGAAKDKRSLQIADESGLAISMTLWGQ 418
Query: 400 FCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGT-ISTTQLFIEPDFPEAHRLKEW 458
N L + +LA++ +VSD+ GK + + +Q+FI+ D LK+W
Sbjct: 419 --NASKLEFKEGS------VLAIRGAKVSDYGGKTLNSGHEHSQIFIDVDHKRTRELKQW 470
Query: 459 ---FEKEGKNTQSV------SISRDSLSVGRADIRKTVSQIKDEG---------LGTKEK 500
++G N+ S + + L R I + V + +EG + + K
Sbjct: 471 NANRNQDGLNSVSTIGGAQGNQQSEKLDNFRL-ISEVVKNVSEEGASHQPTYNSMYAQPK 529
Query: 501 PDWITVSATIVYIKCDN-FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYR 559
+ +S + + + D+ + Y +CP C +KV++ +G + C+ C++S
Sbjct: 530 AKFFKISGFVSHARSDDKYYYLSCP------DCRRKVVDELEG-FRCENCNKSFSRSFPT 582
Query: 560 YILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTK-Y 618
YI+ + QD TG ++ +E ++IMGM+A++ K +N E+ + K +
Sbjct: 583 YIMTVKFQDATGDMYIQFARELGDQIMGMTAEEFKDAKEQLENPEEMKLFLSQQILYKAH 642
Query: 619 LFKLKVKEETFSD------EQRVKSTVVKAERYNYSSETRFIL 655
+K + + + +QR+K T +K ++ E +L
Sbjct: 643 SVVIKAQNDQYRSSTMMEGDQRIKYTAIKVAPISFKEENNMLL 685
>gi|384497733|gb|EIE88224.1| hypothetical protein RO3G_12935 [Rhizopus delemar RA 99-880]
Length = 409
Score = 179 bits (454), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 95/246 (38%), Positives = 140/246 (56%), Gaps = 11/246 (4%)
Query: 214 EVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTC 273
++ S + PI +NPY +WTIKARVT K ++ ++N +GDGK+F + LD GEI+ T
Sbjct: 174 QLESSLTPIKNINPYQSRWTIKARVTLKSPIKQWHNSKGDGKLFSVNFLD-QSGEIKATA 232
Query: 274 FNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIP 333
FN D+ Y+ E G +Y +S+ + A+K F+ L N+ E+ L+ + ++LC DA+IP
Sbjct: 233 FNDQVDRLYNMFEEGNVYYLSKARVTMARKQFSTLDNEYELTLEAGTEIELC-PSDAAIP 291
Query: 334 RQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSV 392
+ F I D++ +E + VD +GVV S ++ K G T KR L + D SG+SV
Sbjct: 292 QMNFKLVKIGDLDSVEKGATVDAMGVVIQDSGLNEIVTKATGKPTNKRELTIVDESGKSV 351
Query: 393 ELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEA 452
LTLW + DS PI+A + RVSDFNG+ + S L PD PEA
Sbjct: 352 RLTLWDKTAEE--------FDSSDSPIVACRGLRVSDFNGRSLSLSSAGTLKKNPDIPEA 403
Query: 453 HRLKEW 458
RL++W
Sbjct: 404 QRLRQW 409
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 57/96 (59%), Gaps = 8/96 (8%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++QV+++K V + R+R ++SDG Q MLATQ LV G ++ S++
Sbjct: 26 PIVQVINIKAV-------PVNGSTRYRAIVSDGINFMQAMLATQHTALVEQGQIKRNSII 78
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDP-IGKPV 96
R+ ++ CN++ N+ ++I++ +D++ + +G PV
Sbjct: 79 RINEYVCNLLSNKKVLIILSIDIMTTDVEAKVGTPV 114
>gi|268530894|ref|XP_002630573.1| C. briggsae CBR-RPA-1 protein [Caenorhabditis briggsae]
gi|74961121|sp|O97472.1|RFA1_CAEBR RecName: Full=Probable replication factor A 73 kDa subunit;
AltName: Full=RP-A p73; AltName: Full=Replication factor
A protein 1; Short=RF-A protein 1
gi|4028997|emb|CAA10310.1| F18A1.5 protein [Caenorhabditis briggsae]
gi|4033360|emb|CAA10466.1| F18A1.5 protein [Caenorhabditis briggsae]
Length = 658
Score = 179 bits (454), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 126/447 (28%), Positives = 231/447 (51%), Gaps = 22/447 (4%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
+IPIA + PY+ + I V+ K +++ N + K+F+F++ DS+G IR T FN A
Sbjct: 223 VIPIAMVTPYVNNFRIHGMVSRKEDIK--NIPAKNMKIFNFEITDSNGDTIRCTAFNETA 280
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
+ F+ + Y +S GS++ A K FN+ +D EI L S+V+ E A+ P+
Sbjct: 281 ESFHSTITENLSYYLSGGSVRQANKKFNNTGHDYEITLRNDSVVEAGGELLAA-PKLNLK 339
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTAS-LMRKNGTETQKRTLHLRDMSGRSVELTLW 397
+ ++ G ++D++ +V + A+ K G KR + L D S V LTLW
Sbjct: 340 RVSLAEIAG-HCGEMIDVLVIVEKMDAEATEFTSKAGKTLTKREMELIDESQALVRLTLW 398
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKV-VGTISTTQLFIEPDFPEAHRLK 456
G D+ ++ D ++A K +FNG +GT S T++ P+ L
Sbjct: 399 G----DEAIKAN--VDDYHGKVIAFKGVIPREFNGGYSLGTGSGTRIIPVPEISGVSELY 452
Query: 457 EWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGT-KEKPDWITVSATIVYIKC 515
+W+ E +++ IS+ S G ++ +T++ +++ G +K D+ +V A I I
Sbjct: 453 DWYTTEKPHSELKLISQ--TSGGMSEAPRTIAGLQEMQFGKDSDKGDYASVKAMITRINP 510
Query: 516 DNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWV 575
++ Y C C KKV+ + DG + C++C++S+ + + Y++QF++ D TG +V
Sbjct: 511 NSALYKGC----ASEGCQKKVIES-DGEYRCEKCNKSMNKFKWLYMMQFELSDETGQVYV 565
Query: 576 TAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRV 635
TAF + A +++G +A+++ LK D+N ++ F +++L+ K ET+++E R
Sbjct: 566 TAFGDSAAKVVGKTAQEVGDLK--DENLNEYNATFERLQFVPKMWRLRCKMETYNEEVRQ 623
Query: 636 KSTVVKAERYNYSSETRFILDLMDKLK 662
K TV E N + +L++++K
Sbjct: 624 KMTVFSVEEVNQDKYIENLKELIEQMK 650
>gi|355704842|gb|EHH30767.1| hypothetical protein EGK_20543 [Macaca mulatta]
Length = 267
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/273 (38%), Positives = 157/273 (57%), Gaps = 19/273 (6%)
Query: 386 DMSGRSVELTLWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLF 444
D S + V TLWG + DG R P+LA+K RVSDF G+ + +S++ +
Sbjct: 2 DTSRKVVTATLWGEDADKFDGSRQ---------PVLAIKGARVSDFGGRSLSVLSSSTII 52
Query: 445 IEPDFPEAHRLKEWFEKEGKNTQSVSISR-DSLSVGRADIR-KTVSQIKDEGLGTKEKPD 502
PD PEA++L+ WF+ G+ VSIS S SVG + KT+ ++K E LG KPD
Sbjct: 53 ANPDIPEAYKLRGWFDA-GQALDGVSISDLKSGSVGGGNTNWKTLYEVKFENLGQSNKPD 111
Query: 503 WITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYIL 562
+ + AT+VY++ +N Y ACP + CNKKV++ +G + C++CD Y IL
Sbjct: 112 YFSSVATVVYLRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDTEFPNFKYHMIL 167
Query: 563 QFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKL 622
I D WVT FQE AE I+G +A L LK D+N++ F EV +NA F ++F++
Sbjct: 168 SVNIADFQENQWVTCFQESAEAILGQNAAYLGDLK--DKNEQAFEEVFQNANFRSFIFRV 225
Query: 623 KVKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
+VK ET+++E R+K+TV+ + +Y R ++
Sbjct: 226 RVKVETYNEESRIKATVMDVKPVDYREYGRRLV 258
>gi|403360589|gb|EJY79974.1| Replication protein A 70 kDa DNA-binding subunit [Oxytricha
trifallax]
Length = 733
Score = 176 bits (446), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 119/428 (27%), Positives = 203/428 (47%), Gaps = 46/428 (10%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHY-----NNQRGDGKVFHFDLLDSDGGEIRVTCFN 275
PI+AL+ W IKAR+T K E+R Y N ++ GK+ + DL+D G +I T FN
Sbjct: 218 PISALSQNSQDWRIKARITKKYEMRQYTQTRRNGEKFPGKILNIDLIDGHGAQIMGTFFN 277
Query: 276 AVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDL-EIFLDMTSMVQLCYEDDASIPR 334
A +F +++ K+Y +S G +K + + F + N+ IF D + + DD SI
Sbjct: 278 DTATRFDSKIKENKVYTISGGQIKLSNQKFTAIKNEFCLIFTDHSEFKEAV--DDESIQS 335
Query: 335 QQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVEL 394
F F I D++ M N +D IG+ Y P K+GT+ Q RT++L D S +++ L
Sbjct: 336 VAFSFVSIQDIKNMYGNKTIDFIGIAQYCQPVKEKQLKSGTKAQ-RTVYLADESNQTIAL 394
Query: 395 TLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
+WG+ N L + P++AVK +S+F G+ + + +Q+ + P P +
Sbjct: 395 CIWGDLANQFDLSIDE------HPVIAVKRANLSEFGGRSLNSNEDSQVIVNPSHPRTQQ 448
Query: 455 LKEWFEKEGKNTQ--SVSISRDSLSVGRA------DIRKTVSQIK------DEGLGTKEK 500
LK WF +Q S+++ ++ D ++ + +I D+ + +
Sbjct: 449 LKHWFNHLADPSQLSSITVQKEKGEFPEEKKSFNFDNQRFLGEIMEALYSGDKSIVDQSL 508
Query: 501 PDWITVSATIVYIKCDNFC-YTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYR 559
+ VSA I +K D+ Y ACP + C +KV+ G W C CD++ C
Sbjct: 509 ASYFYVSAYIWILKNDDRTYYLACP----NDDCKRKVIEESVG-WRCQSCDRTYQTCIPT 563
Query: 560 YILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLK-----------YVDQNDEKFGE 608
Y+L ++ D + ++ +++ IMG+ A L +K + D+ KFG
Sbjct: 564 YMLSAKLADASDAQFINFYKQEGTLIMGLPADKLKEIKDQGDIQVINDTFSDRQFRKFGL 623
Query: 609 VVRNATFT 616
+V+ T
Sbjct: 624 IVKPKQLT 631
>gi|354507912|ref|XP_003515998.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Cricetulus griseus]
Length = 218
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/229 (39%), Positives = 138/229 (60%), Gaps = 13/229 (5%)
Query: 232 WTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIY 291
WTI ARVT K ++R ++N RG+GK+F +L+D + GEIR T FN D+F+ +E K+Y
Sbjct: 1 WTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNEQVDKFFPLIEVNKVY 59
Query: 292 LVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENN 351
S+G+LK A K F+ + ND E+ + + V C ED +P QF F I+D+E +
Sbjct: 60 YFSKGTLKIANKQFSAVKNDYEMTFNNETSVLPC-EDGHHLPTVQFDFTGISDLESKSKD 118
Query: 352 SVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCND-DGLRLQ 409
S+VD+IG+ SY T ++ + E KR ++L DMSG+ V TLWG + DG R
Sbjct: 119 SLVDIIGICKSYEDSTKITVKSSNREVAKRNIYLMDMSGKVVTATLWGEDADKFDGSRQ- 177
Query: 410 HMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEW 458
P++A+K RVSDF G+ + +S++ + + PD PEA++L+ W
Sbjct: 178 --------PVMAIKGARVSDFGGRSLSVLSSSTIIVNPDIPEAYKLRGW 218
>gi|302826559|ref|XP_002994724.1| hypothetical protein SELMODRAFT_432625 [Selaginella moellendorffii]
gi|300137041|gb|EFJ04211.1| hypothetical protein SELMODRAFT_432625 [Selaginella moellendorffii]
Length = 320
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 105/317 (33%), Positives = 162/317 (51%), Gaps = 4/317 (1%)
Query: 327 EDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRD 386
++DA+ PR I E +S V+++G+V +I R +G +KRTL L D
Sbjct: 7 DEDATFPRIVLAKTSILSACQKERDSFVNVVGIVIWIGTITVTSRDSGAFVKKRTLCLGD 66
Query: 387 MSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIE 446
SG SV+L LW ++G +Q DSGV PI+ VK G+VSD+NGK + I + + IE
Sbjct: 67 DSGHSVDLCLWDLKAEEEGSYIQERIDSGVQPIICVKGGKVSDYNGKSLSAIGVSTILIE 126
Query: 447 PDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITV 506
P+ L+EW T + +S S S T+S+I + L E V
Sbjct: 127 PEMEAVADLREWMTLYYNVTNFIHLSTSS-SRQTVSHTTTLSEISNMQLKVLESSPIYRV 185
Query: 507 SATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQI 566
AT+ +K D F Y AC ++ R C KK DG W C C+ +++Y L+ I
Sbjct: 186 IATVKEMKTDEFYYNACINVVNARQCGKKTTRTADG-WFCSYCNIESANMEFKYALKMCI 244
Query: 567 QDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKE 626
+D + W AFQE A+EI+GMSAK+L +++ D+N F ++ Y FK++ K
Sbjct: 245 EDSSSHVWAIAFQEAAQEIVGMSAKELATMR--DENYPAFSLLIDGIRSKIYNFKIRSKL 302
Query: 627 ETFSDEQRVKSTVVKAE 643
E + D ++++ ++ E
Sbjct: 303 EKYQDMEKLRFYILGLE 319
>gi|335748685|gb|AEH58815.1| replication protein A large subunit [Karenia brevis]
Length = 458
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 125/464 (26%), Positives = 225/464 (48%), Gaps = 32/464 (6%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQ--RGDGKVFHFDLLDSDGGEIRVTCFNA 276
+PIA L+ Y KWTIK RVT KG LR +N Q GKVFH +LLD++GGEIR + FN
Sbjct: 6 FMPIAELSTYRTKWTIKGRVTNKGPLRTFNKQGSATQGKVFHVELLDAEGGEIRASFFND 65
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
AD+ ++ +E GK + +S+G ++ A K +N + E+ D ++++ DDASI +
Sbjct: 66 AADRLFNVLEPGKCFTLSKGQIRVANKQYNPTSHRYELIFDREAIIEPAT-DDASINAIK 124
Query: 337 FHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTL 396
F F + V + +D+ GV++ + AS K+G E KR + + D SG S+ +TL
Sbjct: 125 FSFTNLKAVASRQLPCSIDICGVITSFTAPASRTGKDGQELTKREIQVADDSGTSISVTL 184
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGT-ISTTQLFIEPDFPEAHRL 455
WG + + P +A+K V ++ G G+ + + L +P PEA R+
Sbjct: 185 WGXRAKQEDKNFEGQ------PTVALKGVLVKEWQGGRQGSLLQSGTLQFKPAMPEAQRV 238
Query: 456 KEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGL--GTKEKPDWITVSATIVYI 513
++W+ + G +S+ + G + + + G+ + D + + + +
Sbjct: 239 QQWWSQGGSAQSFADLSQTTGGGGESARSRNAKPMTIAGMRAAAERLLDQVEIYNVVCRL 298
Query: 514 ---------KCDNFCYTAC--PIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYIL 562
+ Y AC P PCN++V +G C C+++ + R +
Sbjct: 299 ALVQLRKQGEIQPLQYLACQEPKEGNGLPCNRRVDASG----FCATCNRA-GKTAPRLTV 353
Query: 563 QFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQ--NDEKFGEVVRNATF-TKYL 619
+ + D W+T F E A+ I+ M+ ++ +L+ +++ EK +R F T +
Sbjct: 354 RCRFVDCEDQAWLTTFHEPAQRILDMTGDEVRALELLEEEGGREKLEASIRQRYFATPFT 413
Query: 620 FKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFIL-DLMDKLK 662
++ K ++++ E R T ++A + R +L ++ + LK
Sbjct: 414 VTVRAKMDSYNGEPRTNITAIEARPVSRGEHGRALLKEIQEMLK 457
>gi|123446475|ref|XP_001311988.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121893818|gb|EAX99058.1| hypothetical protein TVAG_433860 [Trichomonas vaginalis G3]
Length = 659
Score = 173 bits (438), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 128/452 (28%), Positives = 213/452 (47%), Gaps = 27/452 (5%)
Query: 219 IIPIAALNPYMGK-WTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAV 277
IIPI+AL Y W I+ R+ + + R Y N G+GK+ + + D G IR T FN
Sbjct: 227 IIPISALCQYTHPGWMIRVRIVSISDPRTYRN--GEGKLMNITMKDDSGTSIRGTFFNEN 284
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEI-FLDMTSMVQLCYEDDASIPRQQ 336
D++ +++ +Y VS G +K A K +N+ ND EI F D TS+ +DD SI
Sbjct: 285 VDRWQPKLKLNNVYKVSGGRVKVANKEYNNTGNDYEISFDDATSIED--DQDDGSISTLS 342
Query: 337 FHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTL 396
F+F ++ + +N+ VD+IG V+ + K G KR L + D + +ELT
Sbjct: 343 FNFVKLDQLAERPDNTTVDIIGWVTTSDQAVTFTSKKGNTMLKRRLEIADDTNSKIELTF 402
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
+G N + +LA R+S F GK + T+ L +EP PE + ++
Sbjct: 403 FGYLANKLPEEPNY--------VLAAGPCRISPFRGKSL-TMFDGNLQVEPAIPETNAIR 453
Query: 457 EWFEKEGKNT--QSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIK 514
W+ + G+ T + S+S + +G +S I ++GLG EK D+ T+ +
Sbjct: 454 AWWNQTGQFTLGEMKSLSNGDVGMGGNSQTLHLSAIDEQGLGQNEKGDYFMAYVTLAELS 513
Query: 515 CD-NFCYTACPIMIGDRPC-NKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
+ FCY ACP + C NK + N DG + C++C Q +R++ +I D +G
Sbjct: 514 SNKKFCYAACP----NEDCKNKGLTPNEDGTYFCEKCQQPKTP-RWRWMFNTKISDFSGS 568
Query: 573 TWVTAF--QECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFS 630
+ + + + I G +L+ + D DE+ + F +L + + +
Sbjct: 569 LYASVIGNDQVGDLIFGKKVNELHD-ELADVKDEETMKFTMPLFFRNLKVRLNARLDNYG 627
Query: 631 DEQRVKSTVVKAERYNYSSETRFILDLMDKLK 662
E R+K +V A NY+ +F ++K K
Sbjct: 628 MESRIKVNIVGASEMNYAEAAKFFASEIEKQK 659
>gi|403342085|gb|EJY70353.1| hypothetical protein OXYTRI_08899 [Oxytricha trifallax]
Length = 769
Score = 173 bits (438), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 170/699 (24%), Positives = 301/699 (43%), Gaps = 101/699 (14%)
Query: 3 VLQVMDLKLVVSKQQQQQQHQQQ-----RFRMVLSDGSRSQQGMLATQRNELVTSGLLQ- 56
+LQ++ +++ + + + QQ R + +SDG+ S + ++ LV L +
Sbjct: 83 ILQIVSEQIIANNRNENSNDPQQMAKVFRAKYTISDGNLSTKSVIQA----LVYDDLQEK 138
Query: 57 --IGSVVRLTKFTCNVIQNRMIVIVMDLDVIIDKC-DPIGKPVPAQRPS------SNEQP 107
+ +V++ VIQ +M++I+ ++ V+ IG P+ ++ SN QP
Sbjct: 139 PKLWDIVKIDSLIKMVIQGQMLIILRNIKVLYSGLTQAIGSPIDIKKALQNGDDLSNLQP 198
Query: 108 GSV-----TGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGA 162
+ + Q+N S Q +S A R+ S N+ KP
Sbjct: 199 VQIPYPIQNSHSQTNTLSQSSQKRQYLNIS----GEQAQSQTRNNNSGGAYNFIKPP--T 252
Query: 163 GSGSFSNQ----SASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSR 218
F+N+ S + P S Y + A Q+ ++ S +
Sbjct: 253 PDQQFNNRQNFGKTSLGDQLPNTSSSSKDKYQNSVFAQKQQNQTL---------SSSEAN 303
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I+PI ALN + W I+AR+ K + R N G + +++D I T FN A
Sbjct: 304 IMPIKALNTFSRDWKIQARIVQKSDKRQTKN---GGSLLKMEIVDRYNTPIEATFFNDAA 360
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D F H++ GK+Y GS+K A K F + ND + + +S + DD SI ++ F
Sbjct: 361 DFFEHKIHVGKVYDFCDGSIKLANKKFTTVKNDFTLTFEKSSQITEV-ADDGSISQETFE 419
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
++PI+ E + + +DLIGVV I+ ++ KN + Q+R + + D S S+ LT+WG
Sbjct: 420 YQPISKCEDLTVGASIDLIGVVLDITSCDTIKLKNNRQKQRRYITIIDESFCSISLTIWG 479
Query: 399 N-FCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTIST-TQLFIEPDFPEAHRLK 456
FC Q M + G ILA+K GR+S+F GK + + + P P ++
Sbjct: 480 EGFC-------QRMNEVGQGDILAMKGGRLSEFGGKTINVADDHASIMVNPSNPRGKKVY 532
Query: 457 EWF----------EKEGKNTQSVSISR-DSLSVGRAD-------------IRKTVSQIKD 492
+W+ K+ K+ ++ SR D + D I + S ++D
Sbjct: 533 DWYIQQVQGGEESMKQIKHLSNLQSSRSDKAELNVVDQSNDKQRRNQLNFICEITSMLQD 592
Query: 493 EGLGTKEKPDWITVSATIVYIKCDN-FCYTACPIMIGDRPCNKKVMNNGDGR---WHCDR 548
E ++ + ++ I IK D+ Y ACP + C +KV + + C+
Sbjct: 593 E--NDVDQQHFFFLNGYISLIKNDDKIFYIACP----NDNCRRKVTEEHQQQGQAYRCEA 646
Query: 549 CDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGE 608
C++ C Y++Q +I D T ++ ++ +MGM+A++ + ++ E
Sbjct: 647 CNKVYRTCQPTYMIQAKITDFTDTIYINFPRDNGTALMGMTAQEFKHFR------DRATE 700
Query: 609 VVRNATFTKYLFK-----LKVKEETFSDEQRVKSTVVKA 642
+A F LFK +K K E + E R++ +K
Sbjct: 701 EELSAYFDSLLFKQFNIMVKGKFEFYGGENRMRFFAIKV 739
>gi|403370207|gb|EJY84965.1| hypothetical protein OXYTRI_17183 [Oxytricha trifallax]
Length = 684
Score = 172 bits (437), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 126/459 (27%), Positives = 215/459 (46%), Gaps = 32/459 (6%)
Query: 213 SEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVT 272
S + PI LN + W IKARV KG+ + + N +G+G + + DL+D +G +I+ T
Sbjct: 232 SSIQEMYTPIRMLNNFTKDWKIKARVIQKGQKKEWRNAKGEGVLLNADLIDHEGTQIQAT 291
Query: 273 CFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASI 332
F A ++ + +YL S G +K A K F + ND + D + + +DD I
Sbjct: 292 FFGEAAHKYDQMLHENHVYLFSNGQVKIANKKFTSIKNDHCLTFDQNAEISEV-QDDNQI 350
Query: 333 PRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSV 392
Q F F + ++E + +D+IGV++ IS T+S+ K+G +R + + D S +
Sbjct: 351 KSQGFSFVTLRNIEKVMAGQAIDVIGVITEISNTSSIPLKSGQNKDRRNITIADESEAKI 410
Query: 393 ELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQL-FIEPDFPE 451
L+LWGN C Q+ + G ++AVK RVSD+ GK + L ++ P
Sbjct: 411 SLSLWGNLCT------QYSYEEG--QVMAVKNVRVSDYGGKSLNCGDDHSLIYLNPADKR 462
Query: 452 AHRLKEWFEKEG--KNTQSVSISRDSLSVGRADIRKTVSQIKDEGL------GTKEKPDW 503
+L +W + G KN Q++S G D + V ++ D L K P +
Sbjct: 463 TDQLMQWSQTGGAKKNLQNLSGGVGGGDSGSRDNYRLVREMSDTLLHENSDRNDKTAPQY 522
Query: 504 ITVSATIVYIKCDN---FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYR- 559
+S I I D + CP C KK GD W C++C++++ R
Sbjct: 523 FKLSGYISKILYDENRMMYFPGCP------ECKKKCSPQGDQYW-CEKCNKALNHNQVRM 575
Query: 560 -YILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKF-GEVVRNATFTK 617
Y + + D + +++ E AE IMGM A D ++ N +F +++ +F
Sbjct: 576 TYTVTAKFDDLSDGIFISFMSESAEPIMGMPASDFSRIREDQSNSLEFIRDLLNEKSFNY 635
Query: 618 YLFKLKVKEETFS-DEQRVKSTVVKAERYNYSSETRFIL 655
Y F +K + ++ +E R K V+++ + + E + +L
Sbjct: 636 YTFVVKAALDDYNINEARFKYQAVRSQPLDMNEENQMLL 674
>gi|403350046|gb|EJY74468.1| hypothetical protein OXYTRI_04276 [Oxytricha trifallax]
Length = 1442
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 127/458 (27%), Positives = 213/458 (46%), Gaps = 38/458 (8%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PI AL+ + W IKAR+ K E + + NQR +G + + DL+DS G +I+ T F +
Sbjct: 266 PIKALSTFHYDWRIKARIIKKYEKKTWKNQRNEGSLMNIDLMDSFGTQIQATFFRDALIK 325
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
F ++ G IYL S G +K A + F + ND + D + ++ DD SI + ++F
Sbjct: 326 FGDMIKEGHIYLFSNGQVKLANQKFTSIKNDFCLVFDKQADIKEV-PDDTSINQNGYNFV 384
Query: 341 PINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNF 400
+ D+ ME + VVD+I V+ L K G KR + + D S SV + W
Sbjct: 385 TVKDILTMEKSKVVDIIAVIINPGNLIELQTKAGQNKVKRLITIADDSYMSVNVCFWTES 444
Query: 401 CND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWF 459
+ D L H ++A++ RV DF GK + Q+ + D P ++LK+WF
Sbjct: 445 ASKFDLLEGNH--------VVALRGVRVVDFQGKQLNFGDDAQMIKDFDHPRTYQLKKWF 496
Query: 460 EKEGKNTQSVSISR-DSLSVGRADIRKTVSQIKD--EGLGTKEKPD---------WITVS 507
E N SI++ D S +A + + + + E L E P+ + T++
Sbjct: 497 ENLNSNDIIRSINKSDKESPKKASNKDSTQLVAELLEQLNLNE-PEQNSYAKSNKFFTIN 555
Query: 508 ATIVYIKCDN-FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQI 566
I YI+ D+ Y ACP + CN+KV+ + C+ C+++ C Y+L ++
Sbjct: 556 CNIAYIRNDDKVLYLACP----EETCNRKVIEEQPNVYKCEFCNRTYDRCVPTYMLMVKL 611
Query: 567 QDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKE 626
QD + +V ++E +IM SA ++ LK +Q+ + + ++ F Y +K K+
Sbjct: 612 QDQSDSIYVNFYRELGSQIMAASANEIKRLKDENQHTQ-ISDQFFDSQFKNYQILIKAKQ 670
Query: 627 ETF---------SDEQRVKSTVVKAERYNYSSETRFIL 655
D R K +++ SE R +L
Sbjct: 671 SAVPNQNGSNVSDDNNRTSFYASKILNHSFPSENRELL 708
>gi|403359819|gb|EJY79566.1| hypothetical protein OXYTRI_23155 [Oxytricha trifallax]
Length = 1367
Score = 172 bits (436), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 127/458 (27%), Positives = 213/458 (46%), Gaps = 38/458 (8%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PI AL+ + W IKAR+ K E + + NQR +G + + DL+DS G +I+ T F +
Sbjct: 266 PIKALSTFHYDWRIKARIIKKYEKKTWKNQRNEGSLMNIDLMDSFGTQIQATFFRDALIK 325
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
F ++ G IYL S G +K A + F + ND + D + ++ DD SI + ++F
Sbjct: 326 FGDMIKEGHIYLFSNGQVKLANQKFTSIKNDFCLVFDKQADIKEV-PDDTSINQNGYNFV 384
Query: 341 PINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNF 400
+ D+ ME + VVD+I V+ L K G KR + + D S SV + W
Sbjct: 385 TVKDILTMEKSKVVDIIAVIINPGNLIELQTKAGQNKVKRLITIADDSYMSVNVCFWTES 444
Query: 401 CND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWF 459
+ D L H ++A++ RV DF GK + Q+ + D P ++LK+WF
Sbjct: 445 ASKFDLLEGNH--------VVALRGVRVVDFQGKQLNFGDDAQMIKDFDHPRTYQLKKWF 496
Query: 460 EKEGKNTQSVSISR-DSLSVGRADIRKTVSQIKD--EGLGTKEKPD---------WITVS 507
E N SI++ D S +A + + + + E L E P+ + T++
Sbjct: 497 ENLNSNDIIRSINKSDKESPKKASNKDSTQLVAELLEQLNLNE-PEQNSYAKSNKFFTIN 555
Query: 508 ATIVYIKCDN-FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQI 566
I YI+ D+ Y ACP + CN+KV+ + C+ C+++ C Y+L ++
Sbjct: 556 CNIAYIRNDDKVLYLACP----EETCNRKVIEEQPNVYKCEFCNRTYDRCVPTYMLMVKL 611
Query: 567 QDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKE 626
QD + +V ++E +IM SA ++ LK +Q+ + + ++ F Y +K K+
Sbjct: 612 QDQSDSIYVNFYRELGSQIMAASANEIKRLKDENQHTQ-ISDQFFDSQFKNYQILIKAKQ 670
Query: 627 ETF---------SDEQRVKSTVVKAERYNYSSETRFIL 655
D R K +++ SE R +L
Sbjct: 671 SAVPNQNGSNVSDDNNRTSFYASKILNHSFPSENRELL 708
>gi|260793787|ref|XP_002591892.1| hypothetical protein BRAFLDRAFT_89409 [Branchiostoma floridae]
gi|229277104|gb|EEN47903.1| hypothetical protein BRAFLDRAFT_89409 [Branchiostoma floridae]
Length = 256
Score = 172 bits (435), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 110/315 (34%), Positives = 155/315 (49%), Gaps = 60/315 (19%)
Query: 41 MLATQRNELVTSGLLQIGSVVRLTKFTCNVIQ-NRMIVIVMDLDVIIDKCDPIGKPVPAQ 99
MLATQ+N LV S LQ V+RL K+ CN IQ NR ++I++++ V+ + + I P P
Sbjct: 1 MLATQQNSLVHSQKLQQNCVIRLEKYICNTIQDNRRVLIMLEVQVLGNPGNKIKNPTPVN 60
Query: 100 RPSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPE 159
+ P V ++A + N PG G+ +P
Sbjct: 61 QTGGGTAPAPVQNGGAAHAVNGGMNRSGN------PG----------AGA-------RPN 97
Query: 160 VGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRI 219
GA SF + R SN +P P P+
Sbjct: 98 QGAAGSSF-------------YGR---SNVTASPGTPGRGKPT----------------- 124
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
PIA LNPY +WTI+ARVT KG +R +NN RG+GK+F DLLD + GEIR T FN D
Sbjct: 125 -PIAGLNPYQNRWTIRARVTNKGSIRTWNNARGEGKLFSMDLLD-ESGEIRATAFNDQCD 182
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
+FY +E GK+Y S+GSLK A K + + ND E+ + + V LC ED+A +P Q++F
Sbjct: 183 KFYDLIEIGKVYFFSKGSLKTANKQYTSIQNDYEMSFNNDTTVVLC-EDEADLPSIQYNF 241
Query: 340 RPINDVEGMENNSVV 354
PI +E M N+++
Sbjct: 242 VPIEKLEEMNPNTII 256
>gi|302792122|ref|XP_002977827.1| hypothetical protein SELMODRAFT_417572 [Selaginella moellendorffii]
gi|300154530|gb|EFJ21165.1| hypothetical protein SELMODRAFT_417572 [Selaginella moellendorffii]
Length = 372
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 26/383 (6%)
Query: 259 FDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVS-RGSLKPAQKNFNHLHNDLEIF-- 315
FD++D G EIR+ + A ++ G +Y S G ++ + + + EI
Sbjct: 3 FDVVDVQGTEIRIIGSDDCALVLSDKIVQGTVYSFSGSGGIRHSNQAYTPFEATWEIQAN 62
Query: 316 --LDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN 373
++ T++ ++DA PR I E +S VD++G+V +I R +
Sbjct: 63 KGMEFTAL-----DEDAMFPRIVLAKTSILSACQKERDSFVDVVGIVIWIGTITVTSRDS 117
Query: 374 GTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGK 433
GT +KRTL L D SG SV+L LW ++G +Q DSGV PI+ VK G+VSD+NGK
Sbjct: 118 GTFVKKRTLCLGDDSGHSVDLCLWDLKAEEEGSYIQERIDSGVQPIICVKGGKVSDYNGK 177
Query: 434 VVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDE 493
+ I + + IE + L+EW T + +S S S T+S+I +
Sbjct: 178 SLSAIGVSTILIELEMEAVADLREWMTLYYNVTNFIHLSTSS-SRQIVSCTTTLSEISN- 235
Query: 494 GLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSV 553
V AT+ +K D F Y AC ++ R C KK DG W C C+
Sbjct: 236 -----------IVIATVKEMKTDEFYYNACINVVNARQCGKKTTQTADG-WFCSYCNIVS 283
Query: 554 VECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNA 613
+++Y L+ I+D + W AFQE +EI+GMSAK+L +++ D+N F ++
Sbjct: 284 ANMEFKYALKMCIEDSSSHMWAIAFQEATQEIVGMSAKELATMR--DENYPAFSLLIDGI 341
Query: 614 TFTKYLFKLKVKEETFSDEQRVK 636
Y FK+ K E + D ++++
Sbjct: 342 RSKIYKFKIWSKLEKYQDMEKLR 364
>gi|335748585|gb|AEH58813.1| replication protein A large subunit [Karenia brevis]
Length = 460
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 127/473 (26%), Positives = 233/473 (49%), Gaps = 50/473 (10%)
Query: 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAV 277
+ PI+ ++PY KWTIKARVT+K +R + + GKVF DLLD+ GGEIR T FN
Sbjct: 6 QFFPISEISPYHTKWTIKARVTSKAPVRTFG--KSGGKVFSVDLLDALGGEIRSTFFNQA 63
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
AD+F ++ G + S+G ++ A + + L++ E+ D ++++ +D+ +I +F
Sbjct: 64 ADKFLDVLKPGACFTFSKGRVRIADRRYTALNHRYELIFDADAIIEPA-KDEGTIEALKF 122
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLW 397
+ + ++ VDL GVV+ + P ++ K G E KR + + D + S+ +TLW
Sbjct: 123 NITSLRAIQSKTLPCGVDLCGVVTAVRPLMTVRNKEGQELLKRDITIADDTATSMTVTLW 182
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGT-ISTTQLFIEPDFPEAHRLK 456
+ + +P++ VK V ++NG G+ +++ L +P F EA R++
Sbjct: 183 AERAKQEDRVFEG------YPVVGVKGVTVKEWNGGRGGSLLASGALVFKPTFEEAKRVQ 236
Query: 457 EWFEKEGKNTQSVSIS-----------RDSLSVGRADIRKTVSQIKDEGLGTKEKPDWIT 505
+W+ + G + + IS R++ + A +R+ ++ D+ P+ +
Sbjct: 237 QWWSEGGSSQTLLDISQTTGGDGGGRNRNAAAATLAGVRQAADRLTDQ-------PEIFS 289
Query: 506 VSATIVYIKCDN------FCYTAC--PIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECD 557
V+A + ++ Y AC P PCN++V ++G C C+++ +
Sbjct: 290 VAARLAIVQMRKQGEVQPLQYLACQEPRENSSLPCNRRVDSSG----FCSFCNRA-GKVA 344
Query: 558 YRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSL------KYVDQND--EKFGEV 609
R ++ + D W+T F E A+ ++GMSA+D+ ++ + D D EK
Sbjct: 345 ARLNIRCRFVDFEDQAWMTTFHEAAQRVLGMSAEDVRAMEQGTGDEMADGEDRREKLEAA 404
Query: 610 VRNATFTKYL-FKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
VR F K L ++ K +T++ E R TVV A + R +L ++++
Sbjct: 405 VRARYFEKPLSLVVRAKLDTYNGEVRPNITVVDARPISRGEHGRVMLKEINQI 457
>gi|307193861|gb|EFN76495.1| Replication protein A 70 kDa DNA-binding subunit [Harpegnathos
saltator]
Length = 489
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 136/438 (31%), Positives = 206/438 (47%), Gaps = 46/438 (10%)
Query: 231 KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKI 290
K IKARVT K ++ + N++G K+F L D + EI+ FN D+ Y+ VE K+
Sbjct: 88 KQAIKARVTNKSSIKEWKNKKG--KLFSMHLHD-NSDEIKCVAFN---DKLYNNVENNKV 141
Query: 291 YLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMEN 350
Y +S LK + + +N L N EI + + ++ + DDA IP F F PI+ VE +
Sbjct: 142 YHISNYELKDSDRRYNKLKNQYEIIITDDTRIKESH-DDADIPSIHFDFCPISQVENKQI 200
Query: 351 NSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMS---GRSVELTLWGNFCNDDGLR 407
+D++GVV + K E KR + + D S G + +TLWG
Sbjct: 201 YDTIDVLGVV--VKSNLKTFTKQSNENFKRDIDIVDNSQPSGARICVTLWGQQAQ----- 253
Query: 408 LQHMCDSGVFPILAVKAGRVSDFNGKVVGTIST----TQLFIEPDFPEAHRLKEWFEKEG 463
+ C++G ILA+K RV +FNGK + I++ T + +PD PEA L EW+
Sbjct: 254 -EFDCNNGT--ILAIKGARVDEFNGKRLTIINSPERSTIIRKDPDLPEARVLLEWY---- 306
Query: 464 KNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTAC 523
R S R T+ ++ + LG ++ V A I I +N Y AC
Sbjct: 307 ---------RSYWSKFNCTFR-TIRELTEATLGIT--SNFFKVMAIIDSIHIENCIYKAC 354
Query: 524 PIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAE 583
P C KK+ ++ CD C + + Y +L I D TG VTAF E AE
Sbjct: 355 P----KDNCKKKLTELAFEKYRCDSCKRDYLNFKYCLLLNMIISDITGNHRVTAFDEVAE 410
Query: 584 EIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAE 643
+I+ +SA++L LK D N + + A +Y F LK E F ++R K T + E
Sbjct: 411 KILEISAQELVRLKENDNN--AYIRKIDEAVLKRYTFYLKGIAEVFHGQRRPKYTCISIE 468
Query: 644 RYNYSSETRFILDLMDKL 661
N+ + L +++L
Sbjct: 469 PLNHHIYLMYFLQKINEL 486
>gi|340378782|ref|XP_003387906.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Amphimedon queenslandica]
Length = 256
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 150/251 (59%), Gaps = 8/251 (3%)
Query: 413 DSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSI- 471
D +FP++A+K+ R+SDFNG + ++++ + PD PEAH+LK W++ GK+ S+
Sbjct: 10 DGSMFPVVALKSVRLSDFNGVSLSALASSTILTNPDLPEAHQLKGWYDHHGKDQDVTSLS 69
Query: 472 SRDSLSVGRADIRKTVSQIKD-EGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDR 530
SR++ T QIK+ LG +EKPD+ + IVY+K +N YTACP +
Sbjct: 70 SRNATGSFSDSAFLTFRQIKELNQLGQQEKPDYFSCKGMIVYLKKENCLYTACP----SQ 125
Query: 531 PCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSA 590
CNKKV ++G G + C++C +S YR I++ D+ W+ F E I+GM
Sbjct: 126 DCNKKVNDDGTGNYFCEKCGKSYPSFKYRMIMKLNCVDYLDNCWLDTFHEGGSAIVGMDG 185
Query: 591 KDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSE 650
+ L L+ +Q+ +F +++ A F +++F+++ K +T++DEQR++ + V + NY++E
Sbjct: 186 QKLGELR--EQDAAQFDNIMQEAYFKEFIFRVRAKVDTYNDEQRLRCSCVSVQPVNYATE 243
Query: 651 TRFILDLMDKL 661
T+ ++ ++ +L
Sbjct: 244 TKRLIKMIKEL 254
>gi|312087571|ref|XP_003145524.1| replication factor A 73 kDa subunit [Loa loa]
Length = 607
Score = 169 bits (428), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 120/433 (27%), Positives = 214/433 (49%), Gaps = 24/433 (5%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
+ PI + PY+ KW I VTAK +LR+ R D KVF+F+L D +GG IR+ F+ VA
Sbjct: 176 LTPIKLITPYVNKWRICGVVTAKEDLRNIRTARRDMKVFNFELTDEEGGCIRIAAFDDVA 235
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE-DDASIPRQQF 337
++FY ++ G ++ VS G++K A K FN +D EI + S V C + + P+
Sbjct: 236 EKFYSIIQKGSMFYVSGGTVKQANKRFNTTGHDYEITIRNDSEVLPCLDREKIEQPKLSL 295
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTL 396
+ +V +D+I + ++ + +N G + +KR + L D S + LT
Sbjct: 296 SIVRLCNVANHVGEP-IDVIAIAEKVNDIVEVTARNTGAQLEKRDIILIDASETEITLTF 354
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTI-STTQLFIEPDFPEAHRL 455
WG ++ + +K V ++NG + +I +++++ + D E L
Sbjct: 355 WGEQARTYDKEIEGQT-------IGIKGAFVKEYNGNLSLSIGNSSRIELNMDCAETANL 407
Query: 456 KEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKC 515
W+ + + Q+ +++ L+ IR +S++ G + EK + V+A I +K
Sbjct: 408 YRWYRETRPSVQARNLTTAGLTRDFRIIR--LSEVGALGRDS-EKGIFFNVTAMISSLKA 464
Query: 516 DNFCYTACPIMIGDRPCNKKV--MNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLT 573
D Y +C G C KKV +NN ++ C++CD ++ + Y ++ +I D +G
Sbjct: 465 DGALYKSC----GTNGCKKKVIELNN---QYRCEKCDITLDKYKYVLLMTVEISDFSGSH 517
Query: 574 WVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQ 633
WVT F++ A +++ A+ L L D DE + EV F +Y F+++ K E ++ E+
Sbjct: 518 WVTVFEDKAVKLLKNDAEQLGQLLDNDLLDE-YNEVFNAVRFREYTFRIRAKSEFYNGEE 576
Query: 634 RVKSTVVKAERYN 646
++K V N
Sbjct: 577 KIKWNVFDIHEVN 589
>gi|393910914|gb|EFO18545.2| replication factor A 73 kDa subunit [Loa loa]
Length = 612
Score = 169 bits (427), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 121/438 (27%), Positives = 215/438 (49%), Gaps = 29/438 (6%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
+ PI + PY+ KW I VTAK +LR+ R D KVF+F+L D +GG IR+ F+ VA
Sbjct: 176 LTPIKLITPYVNKWRICGVVTAKEDLRNIRTARRDMKVFNFELTDEEGGCIRIAAFDDVA 235
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE-DDASIPRQQF 337
++FY ++ G ++ VS G++K A K FN +D EI + S V C + + P+
Sbjct: 236 EKFYSIIQKGSMFYVSGGTVKQANKRFNTTGHDYEITIRNDSEVLPCLDREKIEQPKLSL 295
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTL 396
+ +V +D+I + ++ + +N G + +KR + L D S + LT
Sbjct: 296 SIVRLCNVANHVGEP-IDVIAIAEKVNDIVEVTARNTGAQLEKRDIILIDASETEITLTF 354
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTI-STTQLFIEPDFPEAHRL 455
WG ++ + +K V ++NG + +I +++++ + D E L
Sbjct: 355 WGEQARTYDKEIEGQT-------IGIKGAFVKEYNGSLSLSIGNSSRIELNMDCAETANL 407
Query: 456 KEWFEK-----EGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATI 510
W+ + + +N + +S D+ + IR +S++ G + EK + V+A I
Sbjct: 408 YRWYRETRPSVQARNLTTAGLSSDNYARDFRIIR--LSEVGALGRDS-EKGIFFNVTAMI 464
Query: 511 VYIKCDNFCYTACPIMIGDRPCNKKV--MNNGDGRWHCDRCDQSVVECDYRYILQFQIQD 568
+K D Y +C G C KKV +NN ++ C++CD ++ + Y ++ +I D
Sbjct: 465 SSLKADGALYKSC----GTNGCKKKVIELNN---QYRCEKCDITLDKYKYVLLMTVEISD 517
Query: 569 HTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEET 628
+G WVT F++ A +++ A+ L L D DE + EV F +Y F+++ K E
Sbjct: 518 FSGSHWVTVFEDKAVKLLKNDAEQLGQLLDNDLLDE-YNEVFNAVRFREYTFRIRAKSEF 576
Query: 629 FSDEQRVKSTVVKAERYN 646
++ E+++K V N
Sbjct: 577 YNGEEKIKWNVFDIHEVN 594
>gi|340386214|ref|XP_003391603.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Amphimedon queenslandica]
Length = 251
Score = 169 bits (427), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 150/251 (59%), Gaps = 8/251 (3%)
Query: 413 DSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSI- 471
D +FP++A+K+ R+SDFNG + ++++ + PD PEAH+LK W++ GK+ S+
Sbjct: 5 DGSMFPVVALKSVRLSDFNGVSLSALASSTILTNPDLPEAHQLKGWYDHHGKDQDVTSLS 64
Query: 472 SRDSLSVGRADIRKTVSQIKD-EGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDR 530
SR++ T QIK+ LG +EKPD+ + IVY+K +N YTACP +
Sbjct: 65 SRNATGSFSDSAFLTFRQIKELNQLGQQEKPDYFSCKGMIVYLKKENCLYTACP----SQ 120
Query: 531 PCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSA 590
CNKKV ++G G + C++C +S YR I++ D+ W+ F E I+GM
Sbjct: 121 DCNKKVNDDGTGNYFCEKCGKSYPSFKYRVIMKLNCVDYLDNCWLDTFHEGGSAIVGMDG 180
Query: 591 KDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSE 650
+ L L+ +Q+ +F +++ A F +++F+++ K +T++DEQR++ + V + NY++E
Sbjct: 181 QKLGELR--EQDAAQFDNIMQEAYFKEFIFRVRAKVDTYNDEQRLRCSCVTVQPVNYATE 238
Query: 651 TRFILDLMDKL 661
T+ ++ ++ +L
Sbjct: 239 TKRLIKMIKEL 249
>gi|359484959|ref|XP_003633189.1| PREDICTED: LOW QUALITY PROTEIN: replication factor A protein 1-like
[Vitis vinifera]
Length = 390
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 109/391 (27%), Positives = 195/391 (49%), Gaps = 23/391 (5%)
Query: 286 EAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPIND- 344
+ GK+Y +S+G++K A K F +H L+ S V+ ++ IP +F F I +
Sbjct: 10 QLGKVYYISKGAIKVANKQFKTVHLHXXNALNENSEVEEGSNEETLIPXAKFKFVEIEEM 69
Query: 345 ---VEGMENNSVVDLIGVVSYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVELTLWGNF 400
V G E V + GVV +SPT + RK+ + KR + D + ++V ++LW +
Sbjct: 70 GPYVNGKER---VYVSGVVQSVSPTMRIQRKSHNDIVPKRDITFADKTKKTVVVSLWNDH 126
Query: 401 CNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFE 460
+ G L D FPI+A+K+ +V DF + T+S + + + PD E +L W++
Sbjct: 127 ATNVGQELLDNADK--FPIVAIKSLKVGDFQVVSLSTLSESIVLVNPDTRETKKLISWYD 184
Query: 461 KEGKNTQSVSISRDSLSVGRADIRK------TVSQIKDEGLGTKEKPDWITVSATIVYIK 514
E K SI D + +R ++S + ++KP + ++ A I +IK
Sbjct: 185 SECKGASMASIGSDISPSSKGGVRSMYYDRVSLSHVTSNPSLGEDKPSFFSIRAYISFIK 244
Query: 515 CD-NFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLT 573
D Y AC + CNKKV + + C+ C ++ EC RYI+ ++ D +G
Sbjct: 245 PDQTMWYRAC------KTCNKKVTDAIGSEYWCEGCQKNDDECSLRYIMVVKVSDASGEA 298
Query: 574 WVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQ 633
W++ F + AE I G SA +L LK + + F + ++ A + LF++ V + + +E+
Sbjct: 299 WLSLFNDQAERIFGCSADELDKLKSQEGEENLFQQKLKEAIWVPQLFRISVAQHEYMNEK 358
Query: 634 RVKSTVVKAERYNYSSETRFILDLMDKLKSG 664
R + T ++++E+R +L+ + K+K+
Sbjct: 359 RQRITARAVVPVDFAAESRLLLEEISKMKTS 389
>gi|359484858|ref|XP_003633177.1| PREDICTED: LOW QUALITY PROTEIN: replication factor A protein 1-like
[Vitis vinifera]
Length = 448
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 111/389 (28%), Positives = 198/389 (50%), Gaps = 20/389 (5%)
Query: 286 EAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDV 345
+ GK+Y +S+G++K A K F +H L+ S V+ ++ IP +F F I ++
Sbjct: 69 QLGKVYYISKGAIKVANKXFKTVHLHXXNALNENSEVEEGSNEETLIPXAKFKFVEIEEM 128
Query: 346 EGMEN-NSVVDLIGVVSYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVELTLWGNFCND 403
N V + GVV +SPT + RK+ + KR + D + ++V ++LW + +
Sbjct: 129 GPYVNGKECVYVSGVVQSVSPTMRIRRKSHNDIVPKRDITFADKTKKTVVVSLWNDHATN 188
Query: 404 DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEG 463
G L D FPI+A+K+ +V DF + T+S + + + PD E +L W++ E
Sbjct: 189 VGQELLDNADK--FPIVAIKSLKVGDFQVVSLSTLSESIVLVNPDTREXKKLISWYDSEC 246
Query: 464 KNTQSVSISRDSLSVGRADIRK------TVSQIKDEGLGTKEKPDWITVSATIVYIKCD- 516
K SI R +S + +R ++S + ++KP + ++ A I +IK D
Sbjct: 247 KGASMASI-RSDISPSKGGVRSMYYDRVSLSHVTSNPSLGEDKPSFFSIRAYISFIKPDQ 305
Query: 517 NFCYTACPIMIGDRPCNKKVMNN-GDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWV 575
Y AC + CNKKV + G G W C+ C ++ EC RYI+ ++ D +G W+
Sbjct: 306 TMWYRAC------KTCNKKVTDAIGSGYW-CEGCQKNDDECSLRYIMVVKVSDASGEAWL 358
Query: 576 TAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRV 635
+ F + AE I G SA +L LK + + F + ++ A + LF++ V + + +E+R
Sbjct: 359 SLFNDQAERIFGCSADELDKLKSQEGEENLFQQKLKEAIWVPQLFRISVAQHEYMNEKRQ 418
Query: 636 KSTVVKAERYNYSSETRFILDLMDKLKSG 664
+ T ++++E+R +L+ + K+K+
Sbjct: 419 RITARAVVPVDFAAESRLLLEEISKMKTS 447
>gi|302755672|ref|XP_002961260.1| hypothetical protein SELMODRAFT_403000 [Selaginella moellendorffii]
gi|300172199|gb|EFJ38799.1| hypothetical protein SELMODRAFT_403000 [Selaginella moellendorffii]
Length = 326
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/309 (33%), Positives = 159/309 (51%), Gaps = 4/309 (1%)
Query: 327 EDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRD 386
++DA+ PR I E +S VD++G++ +I R +GT +KRTL L D
Sbjct: 7 DEDATFPRIVLAKTSILSACQKERDSFVDVVGIIIWIGTITVTSRDSGTFVKKRTLCLGD 66
Query: 387 MSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIE 446
SG SV+L LW ++G +Q DSGV PI+ VK G+VSD+NGK + I + + IE
Sbjct: 67 DSGHSVDLCLWDLKAEEEGSYIQEQIDSGVQPIICVKGGKVSDYNGKSLSAIGVSTILIE 126
Query: 447 PDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITV 506
P+ L+EW T + +S S S T+S+I + L E V
Sbjct: 127 PEMEAVADLREWMTLYYNVTNFIHLSTSS-SRQTVSCTTTLSEISNMQLKVLESSPIYRV 185
Query: 507 SATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQI 566
AT+ +K D F Y AC ++ R C KK DG W C+ C+ +++Y L+ I
Sbjct: 186 IATVKEMKTDEFYYNACINVVNARQCGKKTTRTADG-WLCNYCNFESANMEFKYALKMCI 244
Query: 567 QDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKE 626
+D + W AFQE A+EI+GMS K+L +++ D+N F ++ Y FK++ K
Sbjct: 245 EDSSSHVWAIAFQEAAQEIVGMSTKELATMR--DENYPAFSLLIDGIRSKIYKFKIRSKL 302
Query: 627 ETFSDEQRV 635
E + D +++
Sbjct: 303 EKYQDMEKL 311
>gi|123394470|ref|XP_001300571.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121881632|gb|EAX87641.1| hypothetical protein TVAG_226230 [Trichomonas vaginalis G3]
Length = 590
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 121/451 (26%), Positives = 212/451 (47%), Gaps = 29/451 (6%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQF 281
I++L+ Y+ +TI ARV K + N G +L G+I+ T + A++F
Sbjct: 154 ISSLSAYISNFTILARVVKK----EFKNLESKGLKILTLILADKSGDIKATAWRDHAEKF 209
Query: 282 YHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE-DDASIPRQQFHFR 340
VE ++Y ++ G + A+K +N +D EI D + +L D I + +F+F
Sbjct: 210 NELVEENQVYAITGGKVSFAKKQYNPTKHDCEITFDGNTKFELVNNADTEEIGKTKFNFV 269
Query: 341 PINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNF 400
I++++ + ++ VD++GV I P+ K G E R++ + D S R +EL LW
Sbjct: 270 KISEIDNLAKDATVDIVGVAIDIQPSQMKRLKTGREVNHRSIEIADDSDRKIELNLWDRN 329
Query: 401 CNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFE 460
C+ + G PI+ +K ++ +FNG+ T+ T D EA+ L+EW+
Sbjct: 330 CD--------LVQEGSNPIIVLKDAKIGEFNGRKNLTVGTLIQVDPSDIQEANDLREWYS 381
Query: 461 KEGKNTQSVSISRDSLSVGRADIRKTVSQIK---DEGLGTKEKPDWITVSATIVYIKCD- 516
+ S+ + V ++ R + IK DE LG D+ V A+I I
Sbjct: 382 G-NPSLSSIKALSSTGGVDNSNRRTPIVMIKTIMDENLGGNGHTDYFDVIASIYNITPQR 440
Query: 517 NFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTG-LTWV 575
+F Y ACP + C+ K + + DG C+ C + + RY + I D TG + +V
Sbjct: 441 SFFYLACP----NEKCSFKGLKDRDGGLFCESCGNMITDPVPRYNYKIGITDFTGTVMFV 496
Query: 576 TAF--QECAEEIMGMSA----KDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETF 629
F E + IMGM+A K+L SL D+ +V +++F+LK E +
Sbjct: 497 QVFGGGENIDRIMGMNAAEFKKELESLDAEDKIAAMLDKVTNRLKGKEFMFRLKANENVY 556
Query: 630 SDEQRVKSTVVKAERYNYSSETRFILDLMDK 660
+++ ++ VV Y + ++ +L+ + K
Sbjct: 557 NEKSTIRFNVVNTFEVKYDTASKRLLEEIAK 587
>gi|302841268|ref|XP_002952179.1| hypothetical protein VOLCADRAFT_105399 [Volvox carteri f.
nagariensis]
gi|300262444|gb|EFJ46650.1| hypothetical protein VOLCADRAFT_105399 [Volvox carteri f.
nagariensis]
Length = 499
Score = 160 bits (404), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 134/461 (29%), Positives = 221/461 (47%), Gaps = 41/461 (8%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQF 281
IA L+PY W IKA+V K LR + + D K+ DL+D G I+ T + A A++F
Sbjct: 55 IAQLHPYDSNWCIKAKVELKAPLRSMSIRGSDVKILTVDLVDDTGQMIQGTFWRAPAERF 114
Query: 282 YHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEI-FLDMTSMVQLCYEDDASIPRQQFHFR 340
+ GK+Y+ R +KPA K ++ + D +I F + T + + +D +S+
Sbjct: 115 SESLMEGKVYVFHRFKVKPADKKYSSVKADYQIDFTERTEVTEAADQDTSSM-TAAVEIT 173
Query: 341 PINDVEGMENNSV-VDLIGVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVELTLWG 398
PI + + VD++GVV + P ++ RK + +E +R + L DMS +SV LTLWG
Sbjct: 174 PIEVLPRRVGGRMPVDVMGVVLALGPLGTVKRKADSSELPRRDITLGDMSCKSVVLTLWG 233
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEW 458
+ + +L+ V + V RV+DFNG V +++ + + + P+ A +L W
Sbjct: 234 DNASAFAGQLEGQEGKVVMQVTHV---RVTDFNGCSVSSLTKSVVSLNPEGSGAAQLLTW 290
Query: 459 FEKEGK-------------NTQSVSISRDSL-SVGRADIRKTVSQIKDEGLGTKEKPDWI 504
+ G T++VS ++ S R K V+ I + L + D
Sbjct: 291 YSTAGMVPDRFTPVGQDLPGTRAVSNGSGAVPSRERFFTVKDVAGISADSL----QDDKA 346
Query: 505 TVSATIVYIKCDN----FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVE-CDYR 559
T A YI N Y A P +KV++ G GRW D VVE ++R
Sbjct: 347 TFQAVTAYIAMVNSELQMYYLANP------ENGRKVVDQGGGRWA--EADGRVVERPEHR 398
Query: 560 YILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYL 619
Y+L ++ DHTG V F + AE +MG+ A +L +LK + E F +R A + +
Sbjct: 399 YVLSVKLADHTGEAVVQLFNKEAEAVMGIKADELAALK---EAGEGFEAALRAAQWRPWS 455
Query: 620 FKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDK 660
+ K ++ E+RV+ T + + ++ SE + + L+ K
Sbjct: 456 VVVMSKAREYNGERRVRHTAHRVDTLDWVSEGQRLAMLIGK 496
>gi|402220694|gb|EJU00765.1| replication factor-a protein, partial [Dacryopinax sp. DJM-731 SS1]
Length = 493
Score = 160 bits (404), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 108/392 (27%), Positives = 195/392 (49%), Gaps = 32/392 (8%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI L+PY +WT+KAR+T K ++R ++N+RG G +F+ + D + G I+ T F
Sbjct: 115 ITPINQLSPYRNQWTVKARITKKSDVRKWSNERGSGYLFNCTMTD-ETGSIKATAFMEQC 173
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D+ ++E GK+Y +S+G + PA+K +N D EI + ++ V+LC DD+++P F
Sbjct: 174 DRLLKEIEEGKVYYISKGKILPAKKIYNTTGCDYEITFNESTNVELC-NDDSNMP-GGFS 231
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
+ + ++ + + + IGVV T + +N + + D SG S ++TLWG
Sbjct: 232 YTVLANLGDLSKDDTCNAIGVVRSRWRTWNNHEENSAPHAH--IIIVDHSGFSCKVTLWG 289
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEW 458
D ++ Q P++A++ +V D++G+ + + + + PD EAH L+ W
Sbjct: 290 KVAEDFDVKDQ--------PVIALRHVKVGDYHGRDLNFQGDSSMTLNPDLKEAHFLRGW 341
Query: 459 FEKEG-----KNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIV-- 511
++ G + Q S S +S V + + T+ ++K + +G K + TV +
Sbjct: 342 YDANGLTYKFQPCQGASGSGESGLVNHSQLM-TLEEVKSKNIGIK-TTSYFTVKLRVKAT 399
Query: 512 -YIKCDN----FCYTACPIMIGDRPCNKKV-MNNGDGRWHCDRCDQSVVECDYRYILQFQ 565
IK +N Y AC C K + ++ D +WHC +C +YRY+++
Sbjct: 400 PRIKEENRHMPISYPACR----SEDCVKGLSYDDSDRKWHCAKCSGCFDAPEYRYLMRIS 455
Query: 566 IQDHTGLTWVTAFQECAEEIMGMSAKDLYSLK 597
+ DH G W + + + A+ L +K
Sbjct: 456 LGDHMGSAWFNIYDNVGKLLFEKKAEVLEQMK 487
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 5/118 (4%)
Query: 29 MVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNRMIVIVMDLDVIIDK 88
++LSDG R Q MLA+Q N G L +++ T+F+ + +Q++ I+I++ +DV+ +
Sbjct: 1 VMLSDGQRFTQAMLASQNNHFAIDGYLTKNCIIKATRFSRSKVQDKTIIIILAMDVVKQE 60
Query: 89 CDPIGKP--VPAQRPSSNEQPGSVTGNPQSNATGVS--LQHHNNTRVSQLPGDTDAVP 142
+ +G P + + P+ QP + T S +S + T+ S L G+ P
Sbjct: 61 KERLGMPQSILDEGPTF-AQPATPTSTKTSTINKISAGAATKSFTKASGLKGEPTITP 117
>gi|401885437|gb|EJT49554.1| hypothetical protein A1Q1_01298 [Trichosporon asahii var. asahii
CBS 2479]
Length = 387
Score = 160 bits (404), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 142/252 (56%), Gaps = 32/252 (12%)
Query: 216 PSR----IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRV 271
PSR I PI L+P WTIKARVT K +++H++NQRG+GK+F L+D + GEIR
Sbjct: 159 PSRDMGPIFPIEGLSP----WTIKARVTQKSDIKHWSNQRGEGKLFSVTLMD-ETGEIRA 213
Query: 272 TCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDAS 331
T FN D FY +E GK++ +S+ + A+K F++++N+ EI + + E + S
Sbjct: 214 TGFNDQVDAFYQLLEEGKVFFISKARINIAKKQFSNVNNEYEITFENQT------EIEPS 267
Query: 332 IPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTET-QKRTLHLRDMSGR 390
+P +++F +ND+E ++ ++ D+IGVV + + K + KR + L D SG+
Sbjct: 268 VPEIKYNFTKLNDLESLQKDATTDVIGVVQEVHDLGQITSKATQKPFNKRDIQLVDQSGQ 327
Query: 391 SVELTLWG----NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIE 446
SV LTLWG NF + D P++A K +VSDF G+ + S+ + I
Sbjct: 328 SVRLTLWGKTAENFTHYD------------HPVVAFKGVKVSDFGGRSLSMFSSATMAIN 375
Query: 447 PDFPEAHRLKEW 458
P+ EA L+ W
Sbjct: 376 PNTDEACALRGW 387
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQV+ +K + S Q R+R++LSDG Q MLATQ N LV + L+ +V+
Sbjct: 25 PVLQVLSVKRINSPASGAQA--TDRYRVILSDGEYFIQSMLATQLNHLVENDELEKNTVI 82
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPV 96
+LT F N +QNR ++I++ L+ +G PV
Sbjct: 83 KLTSFVINTVQNRKLIIILALERQNWNGQKVGNPV 117
>gi|324505539|gb|ADY42379.1| Replication factor A 73 kDa subunit [Ascaris suum]
Length = 620
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 126/450 (28%), Positives = 207/450 (46%), Gaps = 37/450 (8%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI L PY W + +V E+R + RG +F F +D DG EIR+ FN +A
Sbjct: 179 ITPIKLLTPYCKNWRLCIKVVCIEEMRQF---RGTS-LFSFSGVDDDGVEIRICAFNHLA 234
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFL-DMTSMVQLCYEDDASIPRQQF 337
++ V+ ++Y + R S+KP K F D+E+ + D T +++ + S P+ +
Sbjct: 235 EKVAALVKLDQMYYIRRASVKPTTKRFKRNQYDMEVIIRDETEIIECIDRAEISSPKIRC 294
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLW 397
F I ++ N S VD++GVV + L K G KR + + D S RSV TLW
Sbjct: 295 DFIRIRNLPKFAN-SEVDMMGVVREVGDVKQLTGKMGEALVKRDIQIVDDSLRSVIATLW 353
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKV-VGTISTTQLFIEPDFPEAHRLK 456
G R ++ S IL K V ++G + + T +T + + D PE L+
Sbjct: 354 GE-------RAKNFDASSDVTILVFKRALVRTYHGSISLSTTGSTIVDVNADLPEVKALR 406
Query: 457 EWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCD 516
W+E G S + L ++ K + ++K K + V+A I+ I D
Sbjct: 407 RWYE--GNRNASFAALSTELIFSSSE-HKWIGEVK-----VLNKMIYFNVTAMIMNINVD 458
Query: 517 NFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVT 576
N Y C + C KK++ DG HC +C + + Y Y L ++ D TG WV+
Sbjct: 459 NAVYKGCV----NEGCRKKLLE-VDGTLHCPKCGNASDDYKYFYTLSMELCDMTGTHWVS 513
Query: 577 AFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVK----EETFSDE 632
F + AE++MG SA ++ + N + + R F Y F++ + + + S E
Sbjct: 514 VFDDSAEKLMGESADEIAKTRSF--NYDTYCAHFRALLFKTYAFRVVARRCENDSSISRE 571
Query: 633 ---QRVKSTVVKAERYNYSSETRF-ILDLM 658
Q+V ++ + +TR+ ++DLM
Sbjct: 572 RMQQKVGTSGSGSSSARVQHKTRWSVIDLM 601
>gi|391326773|ref|XP_003737886.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Metaseiulus occidentalis]
Length = 393
Score = 159 bits (402), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 153/293 (52%), Gaps = 28/293 (9%)
Query: 175 SNPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTI 234
++P+P+ S P A+T + SPS AN + PI+A+NP+ + TI
Sbjct: 122 TDPKPDVSTP-----AKTSRVLPQGSPSTRAN------------LFPISAVNPFQNRCTI 164
Query: 235 KARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVS 294
+ RVT KGE++ + G GK+F F++LD D GEIRVT FN D+FY +E K+Y +S
Sbjct: 165 RGRVTNKGEIKTWEKASGKGKLFSFEILD-DSGEIRVTGFNEQCDKFYDYIEPKKVYYIS 223
Query: 295 RGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVV 354
K A K + +N+ E+ L S V+LC E +P Q + F I+D+E + + ++
Sbjct: 224 GFQCKAANKQWRTTNNEYELTLGKFSNVELCTETCDDLPEQLYSFVAISDIETLPADQMI 283
Query: 355 DLIGVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCD 413
D+ G++ + RK +G KR + D S + V LTLW + + D
Sbjct: 284 DVCGILKNAGEPQTFNRKSDGKPLTKRDAFIVDDSRKVVTLTLWNDAISK--------ID 335
Query: 414 SGVFPILAVKAGRVSDFNGKV-VGTISTTQLFIEPDFPEAHRLKEWFEKEGKN 465
P++ + R++ FNG + + T + + + I+PD A LK W+ KEG++
Sbjct: 336 RTDHPVILISKARITSFNGGLSIATSAGSAVEIDPDIDRAKELKTWWAKEGES 388
>gi|341875977|gb|EGT31912.1| hypothetical protein CAEBREN_17155 [Caenorhabditis brenneri]
Length = 1297
Score = 156 bits (394), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 120/441 (27%), Positives = 210/441 (47%), Gaps = 33/441 (7%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
++PIA + + + I +T K +R + + + KVF+F++ DS+G IR FN +A
Sbjct: 877 VMPIAMITQNVYGFKINGTITRKEAIRTFPPK--NTKVFNFEVTDSNGDTIRCVAFNELA 934
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
+ Y + Y ++ G + PA K FN+ +D EI L S+V+ D + P+
Sbjct: 935 ESLYSTITENVSYFITNGKVVPANKRFNNTGHDYEINLSNVSIVEPG-GDVVAAPKLNLK 993
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTAS-LMRKNGTETQKRTLHLRDMSGRSVELTLW 397
+ ++ G + +D++ V + P + K G KR + L D S R V+LTLW
Sbjct: 994 RISLGEIAG-HSGERIDVLAYVEKMDPKPTEFTSKAGKTVVKRDMELIDESNRFVKLTLW 1052
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKV-VGTISTTQLFIEPDFPEAHRLK 456
G + + GV P DFNG +GT ++ +P+ L
Sbjct: 1053 GEEAIKADYLHKVVAFKGVIP--------KKDFNGAYSLGTGYGARIIADPEISGVTELY 1104
Query: 457 EWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCD 516
EW+ ++V ++ S S A +T++ ++ G EK D+ +V A I I +
Sbjct: 1105 EWY-------KTVKPTKPSGSSSEAP--RTIAGLQKMQFGDSEKGDFASVKAMITRINPN 1155
Query: 517 NFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVT 576
Y C C KKV+ DG + C++C++++ + Y++QF++ D TG +VT
Sbjct: 1156 TALYKGC----SSEGCQKKVI-ELDGEFRCEKCNKTMRHFKWLYMMQFELSDETGQVYVT 1210
Query: 577 AFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVK 636
AF + A +++G +A ++ LK + + V F +++L+ K ET+++E R K
Sbjct: 1211 AFGDNATKVVGRTAAEVGELKETKPGE--YNAVFEKLKFVSKMWRLRCKMETYNEEVRQK 1268
Query: 637 STVVKAERYNYSSETRFILDL 657
TV E N + ++I DL
Sbjct: 1269 MTVFGVEEVN---QDKYIGDL 1286
>gi|282931288|gb|ADB03555.1| replication protein complex A largest subunit [Tetrahymena
thermophila]
Length = 609
Score = 155 bits (392), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 126/467 (26%), Positives = 221/467 (47%), Gaps = 60/467 (12%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQF 281
I L P TIK R+T KG+L+ + ++G K+F D++D G E ++ FN +A+Q+
Sbjct: 168 IRNLQPNGQPQTIKVRITKKGDLKSFKEKQG--KLFSIDVIDKFGDECSISFFNEIAEQY 225
Query: 282 YHQVEAGKIYLVSRGSLKPAQKNFNHLHN--DLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
+ G++ ++ + S+K N NH +N D + ++ S + +C ED SIP + +
Sbjct: 226 DGLFKVGQVIVLKQFSVKV---NNNHQYNKGDHTVTVNKESKILICQED-PSIPMIKLNR 281
Query: 340 RPINDVEGMENNSVVDLIGVVSYISPTASL-MRKNGTETQKRTLHLRDMSGRSVELTLWG 398
+ I D++ + ++DLI VV + ++ ++K+ + KR + D S E+TLWG
Sbjct: 282 QFIQDMQNKQKGDLIDLIVVVKADTEVKTMILKKDNQQQSKRDIISFDESLIETEITLWG 341
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTIST-TQLFIEPD---FPEAHR 454
D D+ I+ K ++ +F K I TQ+F+ PD FP+ H
Sbjct: 342 ETAKD--------YDAKQGDIIVFKDAKIGEFKDKKQINIGYGTQIFMNPDEQLFPQIHD 393
Query: 455 LKEWFEKEGKNTQSVSISRDSLSVGR------------ADIRKTVSQIKDEGLGTKEKPD 502
+K+W+ +S++ D LS + +++ +K+E + P+
Sbjct: 394 VKKWY---------LSLNSDQLSTIQKAQGNDTGPREVTSFESSLNILKEEIKNLQTDPE 444
Query: 503 ---WITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYR 559
W + I+YIK Y AC C KK+ N + W C C++ E D R
Sbjct: 445 MKIWKEIRGQIMYIKDTPLYYNAC------FSCKKKIARNNEV-WTCINCNKDFNEPDSR 497
Query: 560 YILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRN----ATF 615
YIL I D T WV+AF E ++I+G+ D++ +Y D++ E E + A
Sbjct: 498 YILSLNISDSTDTIWVSAFDEVGQKILGVKG-DVF--RYADEDTEHGTETKKKLLMAAQN 554
Query: 616 TKYLFKLKVKEETFSDEQRVKSTVVKA-ERYNYSSETRFILDLMDKL 661
+Y F L K+E + TV+ A + + + E + I++ ++K
Sbjct: 555 KEYRFLLLTKQERDQNGNARDKTVIHAIKDFQPAYEAKKIINSLEKF 601
>gi|146163802|ref|XP_001012333.2| hypothetical protein TTHERM_00106890 [Tetrahymena thermophila]
gi|146145960|gb|EAR92088.2| hypothetical protein TTHERM_00106890 [Tetrahymena thermophila
SB210]
Length = 671
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 126/467 (26%), Positives = 221/467 (47%), Gaps = 60/467 (12%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQF 281
I L P TIK R+T KG+L+ + ++G K+F D++D G E ++ FN +A+Q+
Sbjct: 230 IRNLQPNGQPQTIKVRITKKGDLKSFKEKQG--KLFSIDVIDKFGDECSISFFNEIAEQY 287
Query: 282 YHQVEAGKIYLVSRGSLKPAQKNFNHLHN--DLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
+ G++ ++ + S+K N NH +N D + ++ S + +C ED SIP + +
Sbjct: 288 DGLFKVGQVIVLKQFSVKV---NNNHQYNKGDHTVTVNKESKILICQED-PSIPMIKLNR 343
Query: 340 RPINDVEGMENNSVVDLIGVVSYISPTASL-MRKNGTETQKRTLHLRDMSGRSVELTLWG 398
+ I D++ + ++DLI VV + ++ ++K+ + KR + D S E+TLWG
Sbjct: 344 QFIQDMQNKQKGDLIDLIVVVKADTEVKTMILKKDNQQQSKRDIISFDESLIETEITLWG 403
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTIST-TQLFIEPD---FPEAHR 454
D D+ I+ K ++ +F K I TQ+F+ PD FP+ H
Sbjct: 404 ETAKD--------YDAKQGDIIVFKDAKIGEFKDKKQINIGYGTQIFMNPDEQLFPQIHD 455
Query: 455 LKEWFEKEGKNTQSVSISRDSLSVGR------------ADIRKTVSQIKDEGLGTKEKPD 502
+K+W+ +S++ D LS + +++ +K+E + P+
Sbjct: 456 VKKWY---------LSLNSDQLSTIQKAQGNDTGPREVTSFESSLNILKEEIKNLQTDPE 506
Query: 503 ---WITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYR 559
W + I+YIK Y AC C KK+ N + W C C++ E D R
Sbjct: 507 MKIWKEIRGQIMYIKDTPLYYNAC------FSCKKKIARNNEV-WTCINCNKDFNEPDSR 559
Query: 560 YILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRN----ATF 615
YIL I D T WV+AF E ++I+G+ D++ +Y D++ E E + A
Sbjct: 560 YILSLNISDSTDTIWVSAFDEVGQKILGVKG-DVF--RYADEDTEHGTETKKKLLMAAQN 616
Query: 616 TKYLFKLKVKEETFSDEQRVKSTVVKA-ERYNYSSETRFILDLMDKL 661
+Y F L K+E + TV+ A + + + E + I++ ++K
Sbjct: 617 KEYRFLLLTKQERDQNGNARDKTVIHAIKDFQPAYEAKKIINSLEKF 663
>gi|308813768|ref|XP_003084190.1| replication protein, putative (ISS) [Ostreococcus tauri]
gi|116056073|emb|CAL58606.1| replication protein, putative (ISS) [Ostreococcus tauri]
Length = 566
Score = 153 bits (386), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 128/456 (28%), Positives = 222/456 (48%), Gaps = 43/456 (9%)
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIR---VTCFNA 276
+P++ALNPY T + G +R R L GE R T F+
Sbjct: 131 VPLSALNPYRTPVTFASTRARAGRVRC---ARSISSTKRAPPLAPRSGERRSKSTTQFSR 187
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
+A + R +PA K ++ ND E+ LD + ++LC + D S ++
Sbjct: 188 LA----------RFTTSPRALSRPADKRYSTSGNDYEMNLDGKAEIELCTDIDQSSAQKM 237
Query: 337 ---FHFRPINDVE---GMENNSVVDLIGVVSYISPTASLMRK-NGTETQKRTLHLRDMSG 389
+ F I+ + G N V + VV +S +++ RK + TE KR + L D S
Sbjct: 238 QRAYAFVSIDKLSTKIGARGNVDV--VAVVKEVSELSTIRRKSDNTELTKREIVLADDST 295
Query: 390 RSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPD- 448
+++ +TLWG+ + G +L M + PI+A+++ RVSD++G VGT+S + + I+ D
Sbjct: 296 KTIRMTLWGDLAVEQGEKLAAMTN----PIVAIRSVRVSDYDGVSVGTVSRSDMVIDADD 351
Query: 449 FPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRK----TVSQIKDEGLG-TKEKPDW 503
P LK+W+ + G T + S G+ R +++++ E + + +KP +
Sbjct: 352 IPRVAELKKWWTEGGSETTFSAAGEGLTSAGQGQKRDIETMNLAELQPEEIAPSTDKPVF 411
Query: 504 ITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQ 563
V A + K D Y A + + NKKV+ + DG+W+C+ Q+ C+ RYI++
Sbjct: 412 AWVCAHTILCKPDQTMYYAA---VPEEGNNKKVVES-DGKWYCEANGQTYDTCERRYIMR 467
Query: 564 FQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEK-FGEVVRNATFTKYLFKL 622
F+ D W+ AF + A ++ G+SA +L+ L +ND K + V+ T+ + F +
Sbjct: 468 FKAIDGYEGAWLNAFNDEATKMFGISANELHELH---ENDYKAYENAVKKMTYKHWSFLV 524
Query: 623 KVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLM 658
KV E + E + + T VK NY++E++ +L M
Sbjct: 525 KVVTEEYQGELKRRLTAVKCNAVNYAAESKRLLSKM 560
>gi|154413577|ref|XP_001579818.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121914029|gb|EAY18832.1| hypothetical protein TVAG_294830 [Trichomonas vaginalis G3]
Length = 590
Score = 152 bits (385), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 148/656 (22%), Positives = 275/656 (41%), Gaps = 106/656 (16%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++QV+ +K + +Q +R LSDG+ ML ++ +L+ + ++Q S++
Sbjct: 21 PIVQVVQIK---------ECNQHDLYRAALSDGTHFIPAMLGSKLKDLIENKVIQRNSLI 71
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGV 121
+L K+T + ++ +IV++ ++ + IGKP+
Sbjct: 72 KLLKYTVSN-NSKQPLIVLNAELHKEMNSIIGKPLA------------------------ 106
Query: 122 SLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEF 181
L D + +P P+ P G+ + AS +N
Sbjct: 107 ------------LQIDRNDIPK---------PDLSAPMTSPQRGTITASPASVTNS---- 141
Query: 182 SRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAK 241
P +P + M N IPIA+LN Y+ W++ R+ +K
Sbjct: 142 --PSKVKMTVSPTRSNQSTMQMTTN-------------IPIASLNQYLTSWSLIVRIISK 186
Query: 242 GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPA 301
++R + R GK+F + D + EI+ T FN A++F + VE K+Y VS G +K A
Sbjct: 187 SQMRQFQGSRP-GKLFSIIMRDKNNDEIKGTFFNQEAEKFENLVEQDKVYKVSCGRVKKA 245
Query: 302 QKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVS 361
+ +N ++ EI D TS + + DD SIP F I+D M + VD+I +++
Sbjct: 246 NERYNSTKSEFEITFDSTSSI-IEIPDDNSIPANVLKFTKISDCSKMTGKT-VDIISIIT 303
Query: 362 YISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILA 421
+I ++ K+G+ +KR + + D +G ++E+TLWG+ + D I
Sbjct: 304 FIGDCQTIKTKSGSSIEKRNITVSDETG-TIEVTLWGSSATE--------FDQKESEIFC 354
Query: 422 VKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSV--- 478
V+ VSDF G + + + + P + ++ W+ E N + + L +
Sbjct: 355 VRNVTVSDFRGVSLNVGQSATIVVNPPDNDVKNIRNWY--ESLNDEKKENLKQKLLIPDY 412
Query: 479 GRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNF-CYTACPIMIGDRPCNKK-- 535
G+A +S+I ++ + E + V+ I + Y ACP + C
Sbjct: 413 GQAATINCLSEIDEKQMCRTENGEVFCVNVMIQDMPSSRKPVYQACP----NEACRGSGL 468
Query: 536 VMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYS 595
+++ G+ C +C++ V RY L + D++G ++ +E M ++
Sbjct: 469 IIDQETGKMICKKCNKEVTNPKLRYSLSLNVGDYSGSAYINVI---GDENSFMPLINVKP 525
Query: 596 LKYVDQNDEKFGEVVRNATFTKYLFK-LKVKEETFSDEQRVKSTVVKAERYNYSSE 650
++ + K R K F+ L+VK + E VK T + N++ E
Sbjct: 526 EEFEIDDTTKL----RTMLLKKSFFRALRVKVRGKNSEYGVKLTAISGGEVNFAEE 577
>gi|294875668|ref|XP_002767427.1| replication factor a 1, rfa1, putative [Perkinsus marinus ATCC
50983]
gi|239868994|gb|EER00145.1| replication factor a 1, rfa1, putative [Perkinsus marinus ATCC
50983]
Length = 577
Score = 152 bits (384), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 148/261 (56%), Gaps = 12/261 (4%)
Query: 208 GLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGG 267
G V V S IIPI+ L+ Y KWTIK RV++K ++R + N RG+G++F +L+D G
Sbjct: 301 GPVSYRPVASDIIPISQLSVYSQKWTIKGRVSSKSDVRTFVNARGEGQLFSIELVDDQNG 360
Query: 268 EIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE 327
EIR T FN+ +FY ++ G++Y S+G +K A FN E+ + ++++
Sbjct: 361 EIRATFFNSAVTKFYPAIQQGRVYTFSKGQVKQANARFNP-GAAYELTFNDDAIIEEA-N 418
Query: 328 DDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRD 386
D A IPR + I ++ + VDL G++++ +P ++++ +N G E +R + D
Sbjct: 419 DSADIPRILYKISKIATIQDRNADEFVDLCGIITHCAPISTIVVRNTGQERARRNFTIVD 478
Query: 387 MSGRSVELTLWGNF---CNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQL 443
SG S+E+T+WG C D R+Q+ P++ +K R+S++ GK + T STT L
Sbjct: 479 DSGCSIEMTVWGETAQNCGVDENRVQY------HPVVMIKNARISNYGGKSLTTASTTTL 532
Query: 444 FIEPDFPEAHRLKEWFEKEGK 464
++PD A +K W+ + G+
Sbjct: 533 EVDPDDSRAFEVKNWWLQGGQ 553
>gi|294875666|ref|XP_002767426.1| replication factor a 1, rfa1, putative [Perkinsus marinus ATCC
50983]
gi|239868993|gb|EER00144.1| replication factor a 1, rfa1, putative [Perkinsus marinus ATCC
50983]
Length = 582
Score = 152 bits (384), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 148/261 (56%), Gaps = 12/261 (4%)
Query: 208 GLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGG 267
G V V S IIPI+ L+ Y KWTIK RV++K ++R + N RG+G++F +L+D G
Sbjct: 306 GPVSYRPVASDIIPISQLSVYSQKWTIKGRVSSKSDVRTFVNARGEGQLFSIELVDDQNG 365
Query: 268 EIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE 327
EIR T FN+ +FY ++ G++Y S+G +K A FN E+ + ++++
Sbjct: 366 EIRATFFNSAVTKFYPAIQQGRVYTFSKGQVKQANARFNP-GAAYELTFNDDAIIEEA-N 423
Query: 328 DDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRD 386
D A IPR + I ++ + VDL G++++ +P ++++ +N G E +R + D
Sbjct: 424 DSADIPRILYKISKIATIQDRNADEFVDLCGIITHCAPISTIVVRNTGQERARRNFTIVD 483
Query: 387 MSGRSVELTLWGNF---CNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQL 443
SG S+E+T+WG C D R+Q+ P++ +K R+S++ GK + T STT L
Sbjct: 484 DSGCSIEMTVWGETAQNCGVDENRVQY------HPVVMIKNARISNYGGKSLTTASTTTL 537
Query: 444 FIEPDFPEAHRLKEWFEKEGK 464
++PD A +K W+ + G+
Sbjct: 538 EVDPDDSRAFEVKNWWLQGGQ 558
>gi|154288368|ref|XP_001544979.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150408620|gb|EDN04161.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 549
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 141/240 (58%), Gaps = 12/240 (5%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI AL+PY KWTIKAR T K ++ ++N+ G+GK+F +LLD D GEIR T F
Sbjct: 168 IYPIEALSPYSHKWTIKARCTNKSAIKTWHNKNGEGKLFSVNLLD-DSGEIRATAFKDQC 226
Query: 279 DQFYHQVEAGKIYLVSR-GSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
D Y E G +Y +S ++ A+K FN+L+N+ E+ + ++V+ E+ +P+ +F
Sbjct: 227 DSLYSVFEEGCVYYISSPCRVQMAKKAFNNLNNEYELTFEKDTVVEKA-EEQNDVPQIRF 285
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVELTL 396
+F I +++ +E + +D+IGV+ + + ++ K ++ KR L L D +G SV LT+
Sbjct: 286 NFTNIANLQSVEAGTTIDVIGVLKDVGELSQILSKTTSKPYDKRDLTLVDNTGYSVRLTV 345
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
WGN + DS ++A K +VSDFNG+ + +S+ + ++ D +AH+LK
Sbjct: 346 WGNIAKE--------FDSVPESVVAFKGVKVSDFNGRSLSLLSSGSMTVDLDIEDAHKLK 397
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 86/145 (59%), Gaps = 8/145 (5%)
Query: 516 DNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWV 575
D Y+AC + D+ CNKKV+ + +G+W C+RCDQS +YRYIL + DHTG W+
Sbjct: 407 DTMAYSAC---LTDK-CNKKVLQDENGQWRCERCDQSFPHPEYRYILSVNVCDHTGALWL 462
Query: 576 TAFQECAEEIMGMSAKDLYSLKYVDQNDEK-FGEVVRNATFTKYLFKLKVKEETFSDEQR 634
+ F E + I+G SA +L LK +NDE+ + E+V+ A + F + K + F D+QR
Sbjct: 463 SCFDEVGKIILGTSANELMELK---ENDERAYEELVQRANCRSWNFNCRAKMDNFQDQQR 519
Query: 635 VKSTVVKAERYNYSSETRFILDLMD 659
V+ V +YS E+ + +L++
Sbjct: 520 VRYQVSSVSAIDYSVESTRLAELIN 544
Score = 62.8 bits (151), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 63/118 (53%), Gaps = 11/118 (9%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PV+Q + +K + Q + +RFR V SD + Q MLATQ N VTSG L G V
Sbjct: 27 PVVQCVQVKPL-----PPQPNSPERFRAVFSDITNYVQTMLATQANHYVTSGQLVRGCFV 81
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVI--IDKCD-PIGKPVP---AQRPSSNEQPGSVTGN 113
RL F N+++ + I+I++DL+V+ + C+ IG P P Q P +++ N
Sbjct: 82 RLKSFQANMVKGKRILIILDLEVLDRLGICEKKIGDPQPLDAKQEEQDKTIPTTISSN 139
>gi|290982322|ref|XP_002673879.1| replication protein A1, 70 kDa-like protein [Naegleria gruberi]
gi|284087466|gb|EFC41135.1| replication protein A1, 70 kDa-like protein [Naegleria gruberi]
Length = 691
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 166/650 (25%), Positives = 278/650 (42%), Gaps = 99/650 (15%)
Query: 1 MPVLQ-VMDLKLVVSKQQQQQQHQQQRFRMVLSDGS----RSQQGMLATQRNELVTSGL- 54
MPVL + ++SKQ + Q +++ L D S SQ + A + S +
Sbjct: 20 MPVLMATLKSPQLISKQPSAKTPGQVLYKVNLYDTSLPTPSSQNTLTAVIPKDRFPSDVS 79
Query: 55 ----LQIGSVVRLTKFTCNVIQNRMIVIVMDLDVIID-------KCDPIGKPVPAQRPSS 103
+ G++ ++KFT + V+++ + + V Q+P +
Sbjct: 80 DPETIAPGTIFNISKFTFKAQPGKAKVVILHTFTLESNNNHHHQQSTTSTTHVNEQKPVT 139
Query: 104 NEQPGSVTGNPQSNAT----------GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPP 153
N QP NP SN T V+ H NNT +Q P + + P
Sbjct: 140 NVQPQR--SNPTSNPTPSSNVKPPSFSVNNSHSNNTVNNQ--------PQQVNRNNQPQP 189
Query: 154 NYF-KPEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGK 212
N F +P+ Q+A+ SNP + R + R P P +P G VG
Sbjct: 190 NTFNRPQ--------PQQTATNSNPVQQ--RNQQQTFNR-PSNPTNNAPRQSV--GNVGP 236
Query: 213 SEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVT 272
+ +I+P+ + P++ W IK RVT KGEL+ ++N +G +F +L+D DG EIR T
Sbjct: 237 LKT-KQILPLVGITPWVSDWVIKVRVTKKGELKKWSNPTKEGHLFSLELIDEDGVEIRAT 295
Query: 273 CFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDA-S 331
F ++FY ++ K+Y + G K A K ++ L + E+ S+++ +D A +
Sbjct: 296 FF---TNKFYDHIKESKVYFMKGGKAKSADKKYSRLPHSYELTFYDNSVIEEAEDDQAKN 352
Query: 332 IPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRK-----NGTETQ--KRTLHL 384
IP+ F F P ++ +E + VD++GVV I + + K N E Q KR L L
Sbjct: 353 IPQGHFEFIPFEQLKTIEKKNGVDIVGVVKSIGNSEQMTIKSKQDPNAIEKQTTKRELIL 412
Query: 385 --RDMSGRSVE--LTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKV-VGTIS 439
+D G E +TLWG +D + ++ D+ +F L +K +F G V + T
Sbjct: 413 INKDNDGNIYEAAITLWG----EDNISF-NIGDTVIFTALTIK-----EFKGGVKLSTSK 462
Query: 440 TTQLFIEPDFPEAHRLKEWF--------EKEGKNTQSVSISRDSLSVGRADIRKT-VSQI 490
+T++ D PE+ R+ E F E +G ++ S D+ V +
Sbjct: 463 STKILTNFDLPESRRVMEQFANLETPIEEIKGVLLSAIESSGSFKKYSLEDLDTVRVQDL 522
Query: 491 KDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVM--NNGDGRWHCDR 548
+ E +K + + K N Y AC + C K + + D + C
Sbjct: 523 EQEKFKSKT----FFIRSHFSLFKDGNLTYCAC----VNEECKSKKLKRDEMDNSYTCPL 574
Query: 549 CDQSVVECD--YRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSL 596
C+ E ++Y+ + DHT +TAF + ++G+ A D Y+L
Sbjct: 575 CNTKYDETTAAHKYMTSVVLGDHTCTKTLTAFDKGMTLLLGVPAGDFYAL 624
>gi|302825229|ref|XP_002994245.1| hypothetical protein SELMODRAFT_432174 [Selaginella moellendorffii]
gi|300137892|gb|EFJ04690.1| hypothetical protein SELMODRAFT_432174 [Selaginella moellendorffii]
Length = 982
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 152/329 (46%), Gaps = 23/329 (6%)
Query: 259 FDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVS-RGSLKPAQKNFNHLHNDLEIFLD 317
FD++D G EIR+ + A ++ G +Y S G ++ + + + EI +
Sbjct: 3 FDVVDVQGTEIRIIGSDDCALVLSDKIVQGTVYSFSGSGGIRRSNQAYTPFEATWEIQAN 62
Query: 318 MTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTET 377
M ++DA+ PR I E +S VD++G+V +I R +GT
Sbjct: 63 -KGMEFTALDEDATFPRIVLAKTSILSACQKERDSFVDVVGIVIWIGTITVTSRDSGTFV 121
Query: 378 QKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGT 437
+KRTL L D SG SV+L LW ++G +Q DSGV PI+ VK G+VSD+NGK +
Sbjct: 122 KKRTLCLGDDSGHSVDLCLWDLKAEEEGSYIQERIDSGVQPIICVKGGKVSDYNGKSLSA 181
Query: 438 ISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGT 497
I + + IEP+ L+EW T + +S S S T+S+I + L
Sbjct: 182 IGVSTILIEPEMEAVADLREWMTLYYNVTNFIHLSTSS-SRQTVSCTTTLSEISNMQLKM 240
Query: 498 KEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECD 557
+F Y AC ++ R C KK DG W C+ C+ +
Sbjct: 241 -------------------SFYYNACINVVNARQCGKKTTRTADG-WFCNYCNFESANME 280
Query: 558 YRYILQFQIQDHTGLTWVTAFQECAEEIM 586
++Y L+ I+D + W AFQE +EI+
Sbjct: 281 FKYALKMCIEDSSSHVWAIAFQEATQEIV 309
>gi|156088471|ref|XP_001611642.1| hypothetical protein [Babesia bovis T2Bo]
gi|154798896|gb|EDO08074.1| conserved hypothetical protein [Babesia bovis]
Length = 462
Score = 145 bits (367), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 130/454 (28%), Positives = 206/454 (45%), Gaps = 39/454 (8%)
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
PI + Y WTIKARV K LR +GD + H D++D G IRV + A
Sbjct: 5 FPIKNITTYTNNWTIKARVLDKAPLRAI---KGDNHIMHVDVVDKHGDTIRVKFWGKAAT 61
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH- 338
++ +E GK+YL S+G+++ + K FN + EI S + +D+ I Q+ H
Sbjct: 62 KWDEVLEKGKVYLFSKGNVELSNKKFNTTPHKYEITCHQDSQIDPV-DDEGDIKMQRDHK 120
Query: 339 FRPINDVEGME--NNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTL 396
+ D++ M + VDL+ + + + P ++ + G E KR L + D +G ++L L
Sbjct: 121 LLTLRDIKSMPQVTQAPVDLLCIANTVHPAVNITTRAGKELPKRILSIVDNTGYEMDLVL 180
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGR-----VSDFNGKVVGTISTTQLFIEPDFPE 451
WG+ N DG+ Q + + LAVK + S N V T++T + + D +
Sbjct: 181 WGDHANMDGIE-QMEGKAIIATKLAVKEWQGSRSCQSSQNSDV--TLATQENIKDQD--K 235
Query: 452 AHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIV 511
+L+ WFE N ++ SL + + L TK K +I + A +
Sbjct: 236 LTQLESWFENAKANNETFK----SLKTQAQAAKDNYEETDIANLLTKTKGSFI-LRAKLR 290
Query: 512 YIKCDN------FCYTACPIMIGDRPCNKK-VMNNGDGRWHCDRCDQSVVECDYRYILQF 564
I N Y ACP+ C+KK VM+ R+ C C VE RYI
Sbjct: 291 KIHWKNKEGSVRMWYQACPM------CSKKVVMDEDTNRYKCIACSDISVEPVPRYIFSC 344
Query: 565 QIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKV 624
D TG E E+++G SAK+L ++ ++F E +AT +Y V
Sbjct: 345 NFMDATGKINAQITAENGEKLLGKSAKELENMD--PDTLKRFCEF--DATLGEYKLSGYV 400
Query: 625 KEETFSDEQRVKSTVVKAERYNYSSETRFILDLM 658
+ ++ E R + T+ + E NY +ET +LD M
Sbjct: 401 RSNMYNGETRYQFTITRVEDMNYPAETAHMLDKM 434
>gi|387593453|gb|EIJ88477.1| hypothetical protein NEQG_01167 [Nematocida parisii ERTm3]
Length = 573
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 120/452 (26%), Positives = 214/452 (47%), Gaps = 34/452 (7%)
Query: 212 KSEVPSRIIPIAALNPYMG-KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIR 270
K E + I LNP+ W IKA+V +K +R Y GKVF + D D +
Sbjct: 141 KKEAKRLVTTIIGLNPFQPITWCIKAKVVSKTSVREYTKDGRAGKVFSIIVTDGDS-KCN 199
Query: 271 VTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDA 330
+ F D FY +++ K Y ++ G+LK A K +N ++ EIF+D + + D
Sbjct: 200 IIFFTEFVDAFYDKIQLYKTYEITGGTLKLANKTYNEDIHEYEIFVDRSFTITQT-ADAV 258
Query: 331 SIPRQQFHFRPINDVEGMEN--NSVVDLIGVVSYISPTASLMRK-NGTETQKRTLHLRDM 387
+ + + I V + N N VV ++ V++ + +++RK + +KRTL + D
Sbjct: 259 KVVKMP---KAIVKVSQLVNKINEVVSMLVVITSVGEIETVLRKKDQYAMKKRTLRVGDD 315
Query: 388 SGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDF-NGKVVGTISTTQLFIE 446
SG + +W D M D IL ++ R++++ N +G +
Sbjct: 316 SGETAPFIVW----EDTAAMEFSMGD-----ILLLEGARITEYQNTPQIGLSRDGIISFN 366
Query: 447 PDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITV 506
P+ PE +LK W+ K Q+ S SVG A+ + ++ +K + + ++ T+
Sbjct: 367 PELPEVFKLKGWYNKNENILQTSSSVGTRKSVGGANRQVKIADVKTDCM------EYATI 420
Query: 507 SATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDG--RWHCDRCDQSVVECDYRYILQF 564
T+++I YT+C I D CNKKV + D ++C++CD + C Y Y
Sbjct: 421 KCTVLFISEKTLMYTSC---IADN-CNKKVEHKIDSPEDYYCNKCDATYARCSYSYGPSL 476
Query: 565 QIQDHTGLTWVTAFQECAEEIM-GMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLK 623
I D++ WV+AF + A + +SA DL +L V+ ND K+ E+ + + + + ++
Sbjct: 477 SISDNSSSIWVSAFGDTASVLFNNLSAVDLNNLS-VNDND-KYKEITQQSIGAEMIINIR 534
Query: 624 VKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
+E T++ E +++ T + +Y E +L
Sbjct: 535 GRESTYNGEPQMRYTATAIKPVDYLEECTNLL 566
>gi|387597110|gb|EIJ94730.1| hypothetical protein NEPG_00254 [Nematocida parisii ERTm1]
Length = 573
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 120/452 (26%), Positives = 214/452 (47%), Gaps = 34/452 (7%)
Query: 212 KSEVPSRIIPIAALNPYMG-KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIR 270
K E + I LNP+ W IKA+V +K +R Y GKVF + D D +
Sbjct: 141 KKEAKRLVTTIIGLNPFQPITWCIKAKVVSKTSVREYTKDGRAGKVFSIIVTDGDS-KCN 199
Query: 271 VTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDA 330
+ F D FY +++ K Y ++ G+LK A K +N ++ EIF+D + + D
Sbjct: 200 IIFFTEFVDAFYDKIQLYKTYEITGGTLKLANKTYNEDIHEYEIFVDRSFTITQT-ADAV 258
Query: 331 SIPRQQFHFRPINDVEGMEN--NSVVDLIGVVSYISPTASLMRK-NGTETQKRTLHLRDM 387
+ + + I V + N N VV ++ V++ + +++RK + +KRTL + D
Sbjct: 259 KVVKMP---KAIVKVSQLVNKINEVVSMLVVITSVGEIETVLRKKDQYAMKKRTLRVGDD 315
Query: 388 SGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDF-NGKVVGTISTTQLFIE 446
SG + +W D M D IL ++ R++++ N +G +
Sbjct: 316 SGETAPFIVW----EDTAAMEFSMGD-----ILLLEGARITEYQNTPQIGLSRDGIISFN 366
Query: 447 PDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITV 506
P+ PE +LK W+ K Q+ S SVG A+ + ++ +K + + ++ T+
Sbjct: 367 PELPEVFKLKGWYNKNENILQTSSSVGTRKSVGGANRQVKIADVKTDCM------EYATI 420
Query: 507 SATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDG--RWHCDRCDQSVVECDYRYILQF 564
T+++I YT+C I D CNKKV + D ++C++CD + C Y Y
Sbjct: 421 KCTVLFISEKTLMYTSC---IADN-CNKKVEHKIDSPEDYYCNKCDATYARCSYSYGPSL 476
Query: 565 QIQDHTGLTWVTAFQECAEEIM-GMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLK 623
I D++ WV+AF + A + +SA DL +L V+ ND K+ E+ + + + + ++
Sbjct: 477 SISDNSSSIWVSAFGDTASVLFNNLSAVDLNNLS-VNDND-KYKEITQQSIGAEMIISIR 534
Query: 624 VKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
+E T++ E +++ T + +Y E +L
Sbjct: 535 GRESTYNGEPQMRYTATAIKPVDYLEECTNLL 566
>gi|302820843|ref|XP_002992087.1| hypothetical protein SELMODRAFT_430315 [Selaginella moellendorffii]
gi|300140119|gb|EFJ06847.1| hypothetical protein SELMODRAFT_430315 [Selaginella moellendorffii]
Length = 306
Score = 142 bits (358), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 141/293 (48%), Gaps = 4/293 (1%)
Query: 259 FDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVS-RGSLKPAQKNFNHLHNDLEIFLD 317
FD++D G EIR+ + A ++ G +Y S G ++ + + + EI +
Sbjct: 3 FDVVDVQGTEIRIIGSDDCALVLSDKIVQGTVYSFSGSGGIRRSNQAYTPFEVTWEIQAN 62
Query: 318 MTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTET 377
MV ++DA+ PR I E +S VD++G+V +I R +GT
Sbjct: 63 -KGMVFTALDEDATFPRIVLAKTSILSACQKERDSFVDVVGIVIWIGTITVTSRDSGTFV 121
Query: 378 QKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGT 437
+KRTL L D SG SV+L LW ++G +Q DSGV PI+ VK G+VSD+NGK +
Sbjct: 122 KKRTLCLGDDSGHSVDLCLWDLKAEEEGSYIQERIDSGVQPIICVKGGKVSDYNGKSLSA 181
Query: 438 ISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGT 497
I + + IEP+ L+EW T + +S S S T+S+I + L
Sbjct: 182 IGVSTILIEPEMEAVADLREWMTLYYNVTNFIHLSTSS-SRQTVSCTTTLSEISNMQLKV 240
Query: 498 KEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCD 550
E V AT+ +K D F Y AC ++ R C KK DG W C+ C+
Sbjct: 241 LESSPIYRVIATVKEMKTDEFYYNACINVVNARQCGKKTTRTADG-WFCNYCN 292
>gi|339232632|ref|XP_003381433.1| replication protein ADNA-binding subunit [Trichinella spiralis]
gi|316979773|gb|EFV62513.1| replication protein ADNA-binding subunit [Trichinella spiralis]
Length = 345
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/418 (25%), Positives = 177/418 (42%), Gaps = 100/418 (23%)
Query: 231 KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKI 290
+W I+ARVT K ++R+++N+RGDGK+F DL+D + GEIR T FN D+ + ++ ++
Sbjct: 4 RWCIRARVTRKTDIRNWSNKRGDGKLFSVDLMD-ESGEIRATAFNQECDRLFSVLQPKQV 62
Query: 291 YLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDA-SIPRQQFHFRPINDVEGME 349
YL+ G +K A + F + ND E+ + V+ C +++ +P F F +++
Sbjct: 63 YLIRGGIIKVANRQFTSIDNDYELAFSSETQVEPCKDENVHKLPLLSFRFVKFDEIPRTN 122
Query: 350 NNSVVDLIGVVSYISPTA-SLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRL 408
++D++GVV I + R + E KR L L D + ++ LTLWGN
Sbjct: 123 RKQLIDILGVVEKIGELEHKVARASQRELLKRDLFLIDDTKTAITLTLWGN-------EA 175
Query: 409 QHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQS 468
++ G PI+AVK R+SDF K
Sbjct: 176 ENFKQHG-HPIIAVKGVRISDFGDK----------------------------------- 199
Query: 469 VSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIG 528
+ + V AD + + D ++ VS +++YI +N Y ACP
Sbjct: 200 -----NLVPVALADPNRKTETVGDNA-------EYFNVSGSVMYISRENCMYPACP---- 243
Query: 529 DRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGM 588
CNKK+ + G + C++C+ +D W +
Sbjct: 244 SPDCNKKIADLNTGLYRCEKCN----------------KDFPSFKWRLLLSD-------- 279
Query: 589 SAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYN 646
VD D F N ++F+L+ K+E ++DE R+K ++ N
Sbjct: 280 ----------VDSYDAVFD----NVLLKSFIFRLRAKQEIYNDEMRMKYVCMQVYEIN 323
>gi|70941362|ref|XP_740979.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56519062|emb|CAH80613.1| hypothetical protein PC000124.04.0 [Plasmodium chabaudi chabaudi]
Length = 360
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 122/205 (59%), Gaps = 12/205 (5%)
Query: 196 PYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGK 255
PY S + N G+ ++PI L+ Y KW IKARV +K +R + +GK
Sbjct: 148 PYPNSAVIKINDGI---------LMPINKLSQYSTKWIIKARVQSKDNIRKFYTGNKEGK 198
Query: 256 VFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIF 315
VF+ +L D + GEI+V F D++Y +E GKIY +S+G++K A K FN L +D EI
Sbjct: 199 VFNIELCD-ESGEIKVNFFGKAVDKWYDYLEVGKIYKISKGNIKSANKKFNTLKHDCEIT 257
Query: 316 LDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENN-SVVDLIGVV-SYISPTASLMRKN 373
LD S+++L E+D +IP+ ++F PI++++ N ++VD+IG+V S+ L++K
Sbjct: 258 LDENSILELLEENDMNIPKYIYNFYPISEIKANINTGTLVDVIGIVLSFQELNQILIKKT 317
Query: 374 GTETQKRTLHLRDMSGRSVELTLWG 398
G +K+ L L D + ++ +TLWG
Sbjct: 318 GQYKEKKDLMLIDETNETINVTLWG 342
>gi|344235409|gb|EGV91512.1| Replication protein A 70 kDa DNA-binding subunit [Cricetulus
griseus]
Length = 209
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 112/194 (57%), Gaps = 12/194 (6%)
Query: 267 GEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCY 326
GEIR T FN D+F+ +E K+Y S+G+LK A K F+ + ND E+ + + V C
Sbjct: 26 GEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFSAVKNDYEMTFNNETSVLPC- 84
Query: 327 EDDASIPRQQFHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLR 385
ED +P QF F I+D+E +S+VD+IG+ SY T ++ + E KR ++L
Sbjct: 85 EDGHHLPTVQFDFTGISDLESKSKDSLVDIIGICKSYEDSTKITVKSSNREVAKRNIYLM 144
Query: 386 DMSGRSVELTLWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLF 444
DMSG+ V TLWG + DG R P++A+K RVSDF G+ + +S++ +
Sbjct: 145 DMSGKVVTATLWGEDADKFDGSRQ---------PVMAIKGARVSDFGGRSLSVLSSSTII 195
Query: 445 IEPDFPEAHRLKEW 458
+ PD PEA++L+ W
Sbjct: 196 VNPDIPEAYKLRGW 209
>gi|378755051|gb|EHY65078.1| hypothetical protein NERG_01524 [Nematocida sp. 1 ERTm2]
Length = 569
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 112/444 (25%), Positives = 204/444 (45%), Gaps = 33/444 (7%)
Query: 218 RIIPIAALNPYMGK-WTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
+I I LNP+ K W+IKA+V +K +R Y GKVF + D + + + F
Sbjct: 146 KIGSIKELNPFQQKAWSIKAKVVSKTTVREYMKDGRAGKVFSIIVTDGES-KCNIIFFTE 204
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
D F+ +++ K Y ++ G+LK A K + +D EIF+D + + ++
Sbjct: 205 FVDGFFDKIQIYKTYEITGGALKLANKKYVEDIHDYEIFVDRSFTITPTENMLNAVKMPS 264
Query: 337 FHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTET-QKRTLHLRDMSGRSVELT 395
R E M + VV L+ V+ + +++RK T +KRTL + D SG +V
Sbjct: 265 VVTRISRLREKM--SEVVSLLVVIMTVGEIETVIRKKDQATMKKRTLKVGDDSGEAVPFV 322
Query: 396 LWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDF-NGKVVGTISTTQLFIEPDFPEAHR 454
LW + D V +L ++ RVS++ N +G + P+ PE +
Sbjct: 323 LWEETAD---------MDFSVGDVLLLENVRVSEYQNMPQIGMARDGIISFNPELPEVFK 373
Query: 455 LKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIK 514
LK W+ KN + S++ SVGR + + ++K G+ ++ TV TI+YI
Sbjct: 374 LKGWY---NKNEGTFSVAEPRKSVGRERQKTKLEEVKANGM------EYATVKCTILYIS 424
Query: 515 CDNFCYTACPIMIGDRPCNKKVMNNGDG--RWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
+ Y +CP+ CNKKV + + ++C +CD+ C Y + I D T
Sbjct: 425 EKSVMYPSCPM----DNCNKKVEHPAESPENYYCSKCDRIYTNCSQSYSVSASIADDTSS 480
Query: 573 TWVTAFQECAEEIM-GMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSD 631
W++ F + A + + A ++ L D ++ + + + + + + +++ +E ++
Sbjct: 481 VWLSLFGDSASVLFNNLKAVEMEDLSTEDHDE--YKKTIAKSIGEEMVIRIRGRETRYNG 538
Query: 632 EQRVKSTVVKAERYNYSSETRFIL 655
E ++ T V +Y E+ +L
Sbjct: 539 EPSIQYTAVSITPVDYLEESNNLL 562
>gi|340059107|emb|CCC53482.1| putative replication factor A, 51kDa subunit, fragment, partial
[Trypanosoma vivax Y486]
Length = 317
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 171/315 (54%), Gaps = 21/315 (6%)
Query: 221 PIAALNPYMG-KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
PI +L P++G KW I+ARVT K ++R +N GK+F F L+D + IR T FN D
Sbjct: 11 PIDSLTPFLGSKWWIRARVTDKSDVRRWNKPTSQGKLFSFTLID-ESASIRATVFNDAVD 69
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDAS-IPRQQFH 338
F + G++Y + G +K A + F++++ND E+ D TS + + + +S +P Q+++
Sbjct: 70 IFDPLIVNGQVYYLGGGQVKNANRKFSNVNNDYEVTFDSTSQISIAQDSGSSLLPMQRYN 129
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTLW 397
F PI ++ E S+VD++ VV + ++ +K+ G E KR + + D S SV++TLW
Sbjct: 130 FVPIGILKKREVGSLVDVLVVVHSVDDLTTITQKSTGRELVKRNVRVCD-STASVDVTLW 188
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKE 457
ND+ G +LA++ +V +F+G + + S + + P+ + +L E
Sbjct: 189 ----NDEARNWTF----GQGTVLAIRQLKVGNFDGVSLSSTSQSSFDVNPNIADTKKLAE 240
Query: 458 WF-EKEGKNTQSV-SISRDSLSVGRADI------RKTVSQIKDEGLGTKEKPDWITVSAT 509
W+ G++ S+ S++ + VG + + K I EGLG +PD++ V T
Sbjct: 241 WYISTGGRDVVSLSSLTSAAGGVGGSTLGEGYRGYKYFDDIAVEGLGRGPRPDYVDVRCT 300
Query: 510 IVYIKCDNFCYTACP 524
VY+K D+ Y ACP
Sbjct: 301 PVYLKQDSQWYDACP 315
>gi|339232622|ref|XP_003381428.1| replication protein ADNA-binding subunit [Trichinella spiralis]
gi|316979779|gb|EFV62518.1| replication protein ADNA-binding subunit [Trichinella spiralis]
Length = 337
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/334 (27%), Positives = 157/334 (47%), Gaps = 62/334 (18%)
Query: 231 KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKI 290
+W I+ARVT K ++R+++N+RGDGK+F DL+D + GEIR T FN D+ + ++ ++
Sbjct: 34 RWCIRARVTRKTDIRNWSNKRGDGKLFSVDLMD-ESGEIRATAFNQECDRLFSVLQPKQV 92
Query: 291 YLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDA-SIPRQQFHFRPINDVEGME 349
YL+ G +K A + F + ND E+ + V+ C +++ +P F F +++
Sbjct: 93 YLIRGGIIKVANRQFTSIDNDYELAFSSETQVEPCKDENVHKLPLLSFRFVKFDEIPRTN 152
Query: 350 NNSVVDLIGVVSYISPTA-SLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRL 408
++D++GVV I + R + E KR L L D + ++ LTLWGN
Sbjct: 153 RKQLIDILGVVEKIGELEHKVARASQRELLKRDLFLIDDTKTAITLTLWGN-------EA 205
Query: 409 QHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQS 468
++ G PI+AVK R+SDF K
Sbjct: 206 ENFKQHG-HPIIAVKGVRISDFGDK----------------------------------- 229
Query: 469 VSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIG 528
+ + V AD + K E +G + ++ VS +++YI +N Y ACP
Sbjct: 230 -----NLVPVALADPNR-----KTEAVG--DNAEYFNVSGSVMYISRENCMYPACP---- 273
Query: 529 DRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYIL 562
CNKK+ + G + C++C++ +R +L
Sbjct: 274 SPDCNKKIADLNTGLYRCEKCNKDFPSFKWRLLL 307
>gi|237836603|ref|XP_002367599.1| replication factor-A C terminal domain-containing protein
[Toxoplasma gondii ME49]
gi|211965263|gb|EEB00459.1| replication factor-A C terminal domain-containing protein
[Toxoplasma gondii ME49]
Length = 732
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 127/523 (24%), Positives = 232/523 (44%), Gaps = 75/523 (14%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQF 281
+ LNPY+ +W +K RV + +L N R + F DL D+ G IR + A+ +
Sbjct: 238 LKTLNPYVVRWRLKVRVVERTDLMSTKNAR---QFFTADLKDASGEVIRAVFWGDAAEHW 294
Query: 282 YHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLE-IFLDMTSMVQLCYEDDASIPRQQFHFR 340
++ GK+Y +S+G ++ A K FN + + E +F + + ++ E D S R+
Sbjct: 295 SPVLKQGKVYQMSKGRVQVANKRFNTVGHQYELVFYRDSEITEVADEGDISTARKLKALM 354
Query: 341 PINDV--EGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLW 397
+ D+ E D++ VV P S++ +K G E ++R + + D S +E++LW
Sbjct: 355 SLRDIAESKRELPFFADVLVVVVESQPVTSVVSKKTGEEFKRRNVKVVDRSQYEMEISLW 414
Query: 398 GNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
GN + +G+ L + + + GR + GK +++ Q F D ++ L
Sbjct: 415 GNQVDALEGVSLPRVVAFTGLQVREWQGGRQAS-TGKGGEILTSLQSFAGAD-KDSQTLL 472
Query: 457 EWFEKEGKNTQSVSISRD---------SLSVGRADIRKTVSQIK---------------- 491
+W+++ + + S+SR +L R + K V +IK
Sbjct: 473 QWYKENSGSVRFASMSRSGTGEMGGAGALEKRRVE-EKCVDEIKQMTDGAFSFIGQIRRV 531
Query: 492 -------------DEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMN 538
D +GT A I+Y C + C KK++
Sbjct: 532 YWRARRRDAGEDRDRQMGTSGAD---AQQAVIMYPACSS--------------CRKKLVE 574
Query: 539 NGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDL--YSL 596
NG+G + C CD+ + D+RY+L DHT + F + AEE++G+ A +L +SL
Sbjct: 575 NGEGDYTCYACDKPHAQADWRYMLMVNFVDHTSNITIRCFADQAEELLGVPANELQTWSL 634
Query: 597 KYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILD 656
K + ++ ++ + + + + +V E ++ E+RV+ T +K E+ + + R ++
Sbjct: 635 K---EKEKLLDCLLPLDVYFRVVIRARV--EMYNGEERVQRTAIKIEKLSPAETARRLVA 689
Query: 657 LMDKLKSGDSTSFALKAENIIPKPEMTYTGTGNIGSRQTAPVV 699
L +L S S S +K E +P+ +G TAP V
Sbjct: 690 LTKELLSQASPS--VKDEVSRKRPDSLMSGEEADRDENTAPNV 730
>gi|401405941|ref|XP_003882420.1| replication factor-A C terminal domain-containing protein [Neospora
caninum Liverpool]
gi|325116835|emb|CBZ52388.1| replication factor-A C terminal domain-containing protein [Neospora
caninum Liverpool]
Length = 515
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 117/482 (24%), Positives = 216/482 (44%), Gaps = 66/482 (13%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQF 281
+ LNPY+ +W +K RV + +L N R + F DL D+ G IR + A+Q+
Sbjct: 17 LKTLNPYVVRWCLKVRVVERTDLISTKNAR---QFFTADLKDASGEVIRAVFWGDAAEQW 73
Query: 282 YHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLE-IFLDMTSMVQLCYEDDASIPRQQFHFR 340
++ GK+Y +S+G ++ A K FN + + E +F + +V++ E D S R+
Sbjct: 74 SPVLKQGKVYQMSKGRVQVANKRFNTVGHQYELVFYRDSEIVEVPDEGDISTARKLKALM 133
Query: 341 PINDV--EGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLW 397
+ D+ E D++ VV P S++ +K G E ++R + + D S +E++LW
Sbjct: 134 SLRDIAESKREVPFFADVLVVVVESQPITSVVSKKTGEEFKRRNVKVVDRSQYEMEISLW 193
Query: 398 GNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
GN + +G+ L + + + GR + GK +++ Q F + ++ L
Sbjct: 194 GNQVDALEGVSLPRVVAFTGLQVREWQGGRQAS-TGKGSEILTSLQAFAGAE-KDSQSLL 251
Query: 457 EWFEKEGKNTQSVSISR----DSLSVGRADIRKTVSQIKDEGL----------------- 495
+W+++ + S+SR D + G + R+ + DE
Sbjct: 252 QWYKENSGTIRFASMSRSGPGDLGAAGSLEKRRVEEKCIDEIKQKTDGAFSFIGQIRRVY 311
Query: 496 ----------------GTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNN 539
G++ PD A I+Y C + C KK++ N
Sbjct: 312 WRARRRGDEDRDRPMGGSQGAPD--PQQAVIMYPACSS--------------CRKKLVEN 355
Query: 540 GDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYV 599
G+G + C CD+S + D+RY+L DHT V F + AEE++G+ A +L +
Sbjct: 356 GEGDYTCYACDKSHAQADWRYMLMVNFVDHTSNVAVRCFADQAEELLGVPANELQTWPLK 415
Query: 600 DQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMD 659
D+ EK + + + ++ + ET++ E+RV+ T +K E+ + R ++ +
Sbjct: 416 DK--EKLMDCLLPLD-VYFRVVIRARVETYNGEERVQRTAIKIEKLSPVEAARRLVTMTK 472
Query: 660 KL 661
+L
Sbjct: 473 EL 474
>gi|209880341|ref|XP_002141610.1| OB-fold nucleic acid binding domain-containing protein
[Cryptosporidium muris RN66]
gi|209557216|gb|EEA07261.1| OB-fold nucleic acid binding domain-containing protein
[Cryptosporidium muris RN66]
Length = 475
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 121/474 (25%), Positives = 227/474 (47%), Gaps = 60/474 (12%)
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
+PI +N T+K RV K R R D K FH DL+D DG I+V + A+
Sbjct: 1 MPIREVNVNRQIITLKGRVIEKS--RTLQTLRNDLKFFHIDLIDKDGDTIKVKFWRNKAE 58
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKN--FNHLHNDLEI-FLDMTSMVQLCYEDDASIPRQ- 335
++Y+++E G +Y+ A N FN+ N EI F + + ++ E D +I +
Sbjct: 59 EYYNKIEQGDVYIFKCTGSDVAVSNARFNNTSNPYEINFSERCKITKV--EHDETISKDP 116
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVEL 394
Q+ F I D+ M VD+IG++ SP + ++ R+N E +R + + D S + +
Sbjct: 117 QYRFLSIKDIRNMNTPCTVDIIGIIKSSSPLSKVISRRNNEEIPRRNIVIVDDSEYQLNV 176
Query: 395 TLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDF----P 450
TLWG+ + D L + P++A K ++ DF GK T++ + DF
Sbjct: 177 TLWGDLASIDDEILSNN------PVVAFKNLQIRDFQGKQGSTLNGRSMI---DFNLKND 227
Query: 451 EAHRLKEWFEKEGKNT--QSVS---ISRDSLSVGRADIRKTVSQIK---DEGLGTKEKPD 502
+++K WF + G+ T QS++ I + + + + K++ +++ DE + +
Sbjct: 228 RMNKVKSWFIEYGQTTKFQSINTTVIQSSNFPMDKLTLEKSLKEVRILMDENSYSSNQT- 286
Query: 503 WITVSATIVYI------------KCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCD 550
+V A I I K + Y ACP C KKV+NN +C++CD
Sbjct: 287 -YSVLARISRIGFPNSIGQNISEKKPSLTYDACP------KCKKKVLNNS----YCEKCD 335
Query: 551 QSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM-GMSAKDLYSLKYVDQNDEKFGEV 609
+SV+ D +Y+ I+D+T V F ++ G+ + + ++ +ND K +
Sbjct: 336 ESVI-ADTKYMFPVTIEDYTSSLSVRCFHNIGSIVLSGLESSECKQMEL--RNDVKLNFL 392
Query: 610 VRNATFTKYL-FKLKVKEETFSDEQRVKSTVVKAERYNYSSET-RFILDLMDKL 661
+ +YL ++ ++ E ++++++ ++ + AE ++ T + +++L +KL
Sbjct: 393 LGFKYLWQYLNLRITLRMEEYNNQKKTQAIIQSAEIIDFDLITNKMLVNLKNKL 446
>gi|221505253|gb|EEE30907.1| replication factor, putative [Toxoplasma gondii VEG]
Length = 726
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 127/523 (24%), Positives = 232/523 (44%), Gaps = 75/523 (14%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQF 281
+ LNPY+ +W +K RV + +L N R + F DL D+ G IR + A+ +
Sbjct: 232 LKTLNPYVVRWCLKVRVVERTDLMSTKNAR---QFFTADLKDASGEVIRAVFWGDAAEHW 288
Query: 282 YHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLE-IFLDMTSMVQLCYEDDASIPRQQFHFR 340
++ GK+Y +S+G ++ A K FN + + E +F + + ++ E D S R+
Sbjct: 289 SPVLKQGKVYQMSKGRVQVANKRFNTVGHQYELVFYRDSEITEVADEGDISTARKLKALM 348
Query: 341 PINDV--EGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLW 397
+ D+ E D++ VV P S++ +K G E ++R + + D S +E++LW
Sbjct: 349 SLRDIAESKRELPFFADVLVVVVESQPVTSVVSKKTGEEFKRRNVKVVDRSQYEMEISLW 408
Query: 398 GNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
GN + +G+ L + + + GR + GK +++ Q F D ++ L
Sbjct: 409 GNQVDALEGVSLPRVVAFTGLQVREWQGGRQAS-TGKGSEILTSLQSFAGAD-KDSQSLL 466
Query: 457 EWFEKEGKNTQSVSISR---------DSLSVGRADIRKTVSQIK---------------- 491
+W+++ + + S+SR +L R + K V +IK
Sbjct: 467 QWYKENSGSVRFASMSRGGTGEMGGAGALEKRRVE-EKCVDEIKQMTDGAFSFIGQIRRV 525
Query: 492 -------------DEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMN 538
D +GT A I+Y C + C KK++
Sbjct: 526 YWRARRRDAGEDRDRQMGTSGAD---AQQAVIMYPACSS--------------CRKKLVE 568
Query: 539 NGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDL--YSL 596
NG+G + C CD+ + D+RY+L DHT + F + AEE++G+ A +L +SL
Sbjct: 569 NGEGDYTCYACDKPHAQADWRYMLMVNFVDHTSNITIRCFADQAEELLGVPANELQTWSL 628
Query: 597 KYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILD 656
K + ++ ++ + + + + +V E ++ E+RV+ T +K E+ + + R ++
Sbjct: 629 K---EKEKLLDCLLPLDVYFRVVIRARV--EMYNGEERVQRTAIKIEKLSPAETARRLVA 683
Query: 657 LMDKLKSGDSTSFALKAENIIPKPEMTYTGTGNIGSRQTAPVV 699
L +L S S S +K E +P+ +G TAP V
Sbjct: 684 LTKELLSQASPS--VKDEVSRKRPDSLMSGEEADRDENTAPNV 724
>gi|221483976|gb|EEE22280.1| replication factor, putative [Toxoplasma gondii GT1]
Length = 726
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 127/523 (24%), Positives = 232/523 (44%), Gaps = 75/523 (14%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQF 281
+ LNPY+ +W +K RV + +L N R + F DL D+ G IR + A+ +
Sbjct: 232 LKTLNPYVVRWCLKVRVVERTDLMSTKNAR---QFFTADLKDASGEVIRAVFWGDAAEHW 288
Query: 282 YHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLE-IFLDMTSMVQLCYEDDASIPRQQFHFR 340
++ GK+Y +S+G ++ A K FN + + E +F + + ++ E D S R+
Sbjct: 289 SPVLKQGKVYQMSKGRVQVANKRFNTVGHQYELVFYRDSEITEVADEGDISTARKLKALM 348
Query: 341 PINDV--EGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLW 397
+ D+ E D++ VV P S++ +K G E ++R + + D S +E++LW
Sbjct: 349 SLRDIAESKRELPFFADVLVVVVESQPVTSVVSKKTGEEFKRRNVKVVDRSQYEMEISLW 408
Query: 398 GNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
GN + +G+ L + + + GR + GK +++ Q F D ++ L
Sbjct: 409 GNQVDALEGVSLPRVVAFTGLQVREWQGGRQAS-TGKGSEILTSLQSFAGAD-KDSQSLL 466
Query: 457 EWFEKEGKNTQSVSISR---------DSLSVGRADIRKTVSQIK---------------- 491
+W+++ + + S+SR +L R + K V +IK
Sbjct: 467 QWYKENSGSVRFASMSRGGTGEMGGAGALEKRRVE-EKCVDEIKQMTDGAFSFIGQIRRV 525
Query: 492 -------------DEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMN 538
D +GT A I+Y C + C KK++
Sbjct: 526 YWRARRRDTGEDRDRQMGTSGAD---AQQAVIMYPACSS--------------CRKKLVE 568
Query: 539 NGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDL--YSL 596
NG+G + C CD+ + D+RY+L DHT + F + AEE++G+ A +L +SL
Sbjct: 569 NGEGDYTCYACDKPHAQADWRYMLMVNFVDHTSNITIRCFADQAEELLGVPANELQTWSL 628
Query: 597 KYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILD 656
K + ++ ++ + + + + +V E ++ E+RV+ T +K E+ + + R ++
Sbjct: 629 K---EKEKLLDCLLPLDVYFRVVIRARV--EMYNGEERVQRTAIKIEKLSPAETARRLVA 683
Query: 657 LMDKLKSGDSTSFALKAENIIPKPEMTYTGTGNIGSRQTAPVV 699
L +L S S S +K E +P+ +G TAP V
Sbjct: 684 LTKELLSQASPS--VKDEVSRKRPDSLMSGEEADRDENTAPNV 724
>gi|145514039|ref|XP_001442930.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124410291|emb|CAK75533.1| unnamed protein product [Paramecium tetraurelia]
Length = 633
Score = 133 bits (334), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 107/429 (24%), Positives = 201/429 (46%), Gaps = 44/429 (10%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
++ I+ L P M + IK R+T+K ++ + N G G +F +++DSD I+ FN +
Sbjct: 204 LLKISELYPGMRGFKIKGRITSKTDITQFKN--GKGYLFTIEIIDSDKQTIQGVFFNKLC 261
Query: 279 DQFYHQVEAGKIYLVSRGSLKP---AQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQ 335
D+FY ++ GK+Y S+K + KN N +D +I + S + + +DD I
Sbjct: 262 DKFYDFIDIGKVYYFENASVKTNRYSSKNQNQ--SDYQIHFEDFSKISIA-QDDEEIDTF 318
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
+ + I DV+ + + D++GV+ I PT +M K+ K+ + L D + R +++
Sbjct: 319 AYQIKTIEDVDNLSLDEKCDVLGVIIDIKPTTQIMTKSNENRSKKNITLYDQTQRGIDIV 378
Query: 396 LWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIE--PDFPEAH 453
LWG + Q D I+A + ++SD+ T++ + ++ + + + +
Sbjct: 379 LWGQ----QAEKWQFQKDE----IVAFRGLKISDYQMVRNLTVTNSTIYEKNLSNLKKIN 430
Query: 454 RLKEWFEKEGKNTQSVSISRDSLSVGRADIRKT-----VSQIKD--EGLGTKEKPDWITV 506
+E++E KN +D L + RK + QIK EG+ + + +
Sbjct: 431 GFQEFYEFYSKN-------KDFLETKPKESRKKFPLSYIEQIKKDFEGIRNIKFVKFYEI 483
Query: 507 SATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGR-WHCDRCDQSVVECDYRYILQFQ 565
A I I Y C C +KV+ + +HC C+Q+ + Y+Y+ +
Sbjct: 484 KAYITNIFTKLLYYEGC------ENCKRKVVYIQQTKLYHCQSCNQNFDQPSYKYMFNAK 537
Query: 566 IQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVK 625
I D TG V+ + ++I+ +S + VD+++ V+ A F ++ F + K
Sbjct: 538 IADTTGNLSVSVANDQGQQILQLSCDEFQKKSQVDKDN-----YVKRANFQQFRFLIIGK 592
Query: 626 EETFSDEQR 634
ET++DE R
Sbjct: 593 VETYNDEIR 601
>gi|393910678|gb|EJD75993.1| replication factor a 1 [Loa loa]
Length = 580
Score = 133 bits (334), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 107/411 (26%), Positives = 190/411 (46%), Gaps = 61/411 (14%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
+ PI L PY W + +VT+ E+R Q +F F +D G EIRV+ F +A
Sbjct: 169 VTPIKLLTPYCKNWRLCIKVTSVDEIRCIRGQH----IFSFLAVDDGGVEIRVSAFGDIA 224
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASI-PRQQF 337
+ + ++Y ++R S+K A + ++ +D+E+ L S V C + + P+ F
Sbjct: 225 CRTATLICPEQMYYITRASVKMANRRYSRNEHDMEVVLRPDSEVTKCTDRPYILSPKVNF 284
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLW 397
F I++++ + + +L QKR + + D SG V + LW
Sbjct: 285 EFVRIHNLQNFIDTEIEEL---------------------QKREIQVVDDSGYYVAINLW 323
Query: 398 GN----FCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKV-VGTISTTQLFIEPDFPEA 452
G F N+ + QH +LAVK V F G + + ++++++L +P FPEA
Sbjct: 324 GQKAKMFPNE---QYQH--------VLAVKRLLVRCFQGTISLVSLASSKLLHDPHFPEA 372
Query: 453 HRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVY 512
L+ W+ + K+ + S+++ V K + Q+K G + ++A I
Sbjct: 373 DALRFWYSENRKSFKPASMNQ----VSSFHEHKWIKQLKPSLDG-----HFFNLTAMISS 423
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWH-CDRCDQSVVECDYRYILQFQIQDHTG 571
I +N Y CP C KK++ D + C +C E Y Y L ++ D TG
Sbjct: 424 IFTENAVYKGCP------TCKKKLLVEKDNDLYICSKCG-ICNEYKYYYTLHMELFDFTG 476
Query: 572 LTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKL 622
VTAF +CA++++G A ++ K++ + E++ ++ F Y+F+L
Sbjct: 477 TVHVTAFDDCAQKLIGEQADEV--AKFLKFDSERYQSSFKSVLFKPYMFRL 525
>gi|390352290|ref|XP_800067.3| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
isoform 2 [Strongylocentrotus purpuratus]
Length = 275
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 141/291 (48%), Gaps = 61/291 (20%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQ++ K + + + R+R++LSDG + MLATQ NE+V++G L + + +
Sbjct: 22 PVLQLLACKKMNAAASGKAVD---RYRLMLSDGEHTCTAMLATQLNEMVSTGELDVKAAM 78
Query: 62 RLTKFTCNVIQN-RMIVIVMDLDVIIDKCD---PIGKPVPAQRPSSNEQPGSVTGNPQSN 117
+L ++CN I N R +++V+DLD++ + IG P P + P Q
Sbjct: 79 KLKNYSCNPIANDRRVIVVLDLDIVKKGSEIGVSIGDPTPMRAPG------------QGG 126
Query: 118 ATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNP 177
A Q ++ VS P T AR P +Y GA + + N+ +F
Sbjct: 127 AAPAQQQSRPDSTVSHDPPQT-----AR------PTSY---GTGAPASATPNKQGTF--- 169
Query: 178 RPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKAR 237
Y QS N + G + P ++ PI++L PY +WTIKAR
Sbjct: 170 -------------------YGQS-----NSAMGGSTTSPKKVQPISSLTPYQNRWTIKAR 205
Query: 238 VTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAG 288
VT K +R ++N RG+GK+F DLLD GEIR T F + D++Y +E G
Sbjct: 206 VTNKTAIRTWSNARGEGKLFSMDLLDQS-GEIRCTAFKDMVDKYYEMIEIG 255
>gi|21465964|pdb|1L1O|C Chain C, Structure Of The Human Replication Protein A (Rpa)
Trimerization Core
gi|21465967|pdb|1L1O|F Chain F, Structure Of The Human Replication Protein A (Rpa)
Trimerization Core
Length = 181
Score = 132 bits (332), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 105/171 (61%), Gaps = 6/171 (3%)
Query: 485 KTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRW 544
KT+ ++K E LG +KPD+ + AT+VY++ +N Y ACP + CNKKV++ +G +
Sbjct: 8 KTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPT----QDCNKKVIDQQNGLY 63
Query: 545 HCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDE 604
C++CD YR IL I D WVT FQE AE I+G +A L LK D+N++
Sbjct: 64 RCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELK--DKNEQ 121
Query: 605 KFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
F EV +NA F ++F+++VK ET++DE R+K+TV+ + +Y R ++
Sbjct: 122 AFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLV 172
>gi|302804959|ref|XP_002984231.1| hypothetical protein SELMODRAFT_423315 [Selaginella moellendorffii]
gi|300148080|gb|EFJ14741.1| hypothetical protein SELMODRAFT_423315 [Selaginella moellendorffii]
Length = 241
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 121/238 (50%), Gaps = 7/238 (2%)
Query: 378 QKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGT 437
+KRTL L D SG SV+L LW ++ +Q DSGV PI+ VK G+VSD+NGK +
Sbjct: 2 KKRTLCLGDDSGHSVDLCLWDLKAEEESSYIQERIDSGVQPIICVKGGKVSDYNGKSLSA 61
Query: 438 ISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGT 497
I + + IEP+ L+EW T + +S S S T+S+I + L
Sbjct: 62 IGVSTILIEPEMEAVADLREWMTLYYNITNFIHLSTSS-SRQTVSCTTTLSEISNMQLKV 120
Query: 498 KEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECD 557
+ V AT+ +K + F Y AC ++ C KK DG W C C+ +
Sbjct: 121 LKSSPIYRVIATVKEMKTNEFYYNACINVMNAWQCGKKTSRTADG-WFCSYCNIESANME 179
Query: 558 YRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFG---EVVRN 612
++Y L+ I+D + W AFQE A+EI+G+ AK L +++ D+N F +V RN
Sbjct: 180 FKYALKMCIEDSSSHVWAIAFQEAAQEIVGIPAKKLATMR--DENYPTFSLHIDVTRN 235
>gi|62318947|dbj|BAD94042.1| RNA helicase [Arabidopsis thaliana]
Length = 253
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 136/255 (53%), Gaps = 14/255 (5%)
Query: 418 PILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLS 477
P++A+K+ +V DF G + TIS + + I P+ PEA +LK WF+ EGK SI
Sbjct: 4 PVIAIKSLKVGDFQGVSLSTISRSNVVINPESPEAKKLKSWFDSEGKEISMSSIGSGMSP 63
Query: 478 VGRADIRKT------VSQIKDEGLGTKEKPDWITVSATIVYIKCD-NFCYTACPIMIGDR 530
+ R +S I +EKP + + A I +IK D Y AC +
Sbjct: 64 SAKNGSRSLYTDRVLLSHITSNPSLFEEKPVFFSTRAYISFIKPDQTMWYQAC------K 117
Query: 531 PCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSA 590
CNKKV D + C+ C + EC RYI+ ++ D +G TW+++F + AE+I+G SA
Sbjct: 118 TCNKKVTEALDSGYWCEGCQRKYEECSLRYIMAVKVTDSSGETWISSFNDEAEKILGCSA 177
Query: 591 KDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSE 650
+L LK + ++ ++ AT++ ++F++ V + ++ E+R + TV ++++E
Sbjct: 178 DELNKLKSEEGEVNEYQTKLKEATWSSHVFRVSVTQNEYNGEKRQRVTVKGVAPLDFAAE 237
Query: 651 TRFIL-DLMDKLKSG 664
TR +L D+ +K K+
Sbjct: 238 TRLLLQDISNKNKTS 252
>gi|328909495|gb|AEB61415.1| replication protein a 70 kda DNA-binding subunit-like protein,
partial [Equus caballus]
Length = 187
Score = 131 bits (329), Expect = 2e-27, Method: Composition-based stats.
Identities = 66/171 (38%), Positives = 102/171 (59%), Gaps = 6/171 (3%)
Query: 485 KTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRW 544
KT+ ++K E LG +K D+ + AT+VY++ +N Y ACP + CNKKV++ +G +
Sbjct: 14 KTLYEVKSENLGQGDKADYFSSVATVVYLRKENCMYQACP----SQDCNKKVIDQQNGLY 69
Query: 545 HCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDE 604
C++CD YR IL I D WVT FQE AE I+G + L LK ++N++
Sbjct: 70 RCEKCDSEFPSFKYRMILSVNIADFQENQWVTCFQESAEAILGQNTAYLGELK--EKNEQ 127
Query: 605 KFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
F EV +NA F + F+++VK ETF+DE R+K+TV+ + +Y R ++
Sbjct: 128 AFEEVFQNANFRSFTFRIRVKLETFNDESRIKATVMDVKPVDYREYGRRLI 178
>gi|340504872|gb|EGR31278.1| kelch motif family protein, putative [Ichthyophthirius multifiliis]
Length = 705
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 118/464 (25%), Positives = 208/464 (44%), Gaps = 87/464 (18%)
Query: 201 PSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRG-DGKVFHF 259
P+ Y N E ++ IA L P + ++ KARVT KG R++ ++G + +F
Sbjct: 320 PTKYYN-------EEEGDLLTIAELYPNIEQFKFKARVTKKGTKRNFTTKKGTNSYLFGI 372
Query: 260 DLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMT 319
D++D + E+ +T F D+F +E G Y+ G + Q N N+ + +I + +
Sbjct: 373 DIIDINQDEMSITFFEQEVDRFIDIIEQGHTYIFQIGKI---QSNDNNQYKKGKIQMTAS 429
Query: 320 SMVQ-LCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQ 378
Q + ++D I + + + ++D++ + N +D+I +V+ + K G +
Sbjct: 430 RDTQIMAIDEDKRITQLKIERKMLSDIQQLSKNDKIDVICLVNK-EERKIITLKTGEQRP 488
Query: 379 KRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTI 438
K+ + + D SG VE +WG D+G ++ + + G IL +K G+V ++NG
Sbjct: 489 KKEIFIFDESGVEVEFDIWG----DEGDQMTY--NKG--DILLIKDGKVGEYNGNKFLQW 540
Query: 439 ST--TQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLG 496
S+ TQ+ PD P++ F+ N Q DE L
Sbjct: 541 SSFMTQIITNPD-PQS------FKDAKLNNQL-----------------------DENLK 570
Query: 497 TKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVEC 556
W + A I+ +K Y ACP C KK+ GD W+C C ++ E
Sbjct: 571 I-----WTEIRAFILRVKDTPLYYNACP------KCLKKIREEGDS-WYCQSCLENRSEP 618
Query: 557 DYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFT 616
RYI I D +G WV A+ E A EI+G SA + + +D+N++
Sbjct: 619 QARYISSICIGDASGQIWVNAYDEVAREILGCSADE---FRILDKNND------------ 663
Query: 617 KYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDK 660
++ E +D R K+ + K + +N +E++ L+++DK
Sbjct: 664 -------IETENMADGIREKTIIQKIKEFNPINESKKFLNMIDK 700
>gi|413944587|gb|AFW77236.1| hypothetical protein ZEAMMB73_509278 [Zea mays]
Length = 464
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 141/272 (51%), Gaps = 21/272 (7%)
Query: 405 GLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGK 464
G L M DS P++A+K+ +V DF G + TI + L I PD PEA L W++ EGK
Sbjct: 200 GQELLDMVDSS--PVVAIKSLKVFDFQGMSLSTIDRSTLEINPDLPEAKNLMSWYDSEGK 257
Query: 465 NTQSVSISRDSLSVGRADI------RKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNF 518
+T V IS ++ + R +S I +EKP + ++ A I +IK D
Sbjct: 258 DTSLVPISAEAGATRAGGFKSMYFDRVFLSYITSNPSMGQEKPVFFSLYAIISHIKPDQI 317
Query: 519 -CYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTA 577
Y AC CNKKV + C+ C ++ EC RYI+ ++ D T WV+
Sbjct: 318 MWYRAC------MTCNKKVTEVFRSGYWCEGCQKNDSECSLRYIMVIKVSDPTSEAWVSV 371
Query: 578 FQECAEEIMGMSAKDL------YSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSD 631
F E AE+I+G +A +L ++ + Q D+ + ++ AT+ +LF++ V + + +
Sbjct: 372 FNEHAEKIIGCNADELDRIRKEWARHRLQQGDDIYVLKLKEATWVPHLFRVSVTQHEYMN 431
Query: 632 EQRVKSTVVKAERYNYSSETRFILDLMDKLKS 663
E+R + TV +Y++E++++++ + KL +
Sbjct: 432 EKRQRITVRGEAPVDYAAESKYLVEEIAKLTA 463
>gi|123477451|ref|XP_001321893.1| OB-fold nucleic acid binding domain containing protein [Trichomonas
vaginalis G3]
gi|121904728|gb|EAY09670.1| OB-fold nucleic acid binding domain containing protein [Trichomonas
vaginalis G3]
Length = 568
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 113/438 (25%), Positives = 195/438 (44%), Gaps = 23/438 (5%)
Query: 215 VPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCF 274
VP + L+PY+ W+IKARVT K ++ + G + F L D+ G EI +
Sbjct: 133 VPEVFHLLTDLSPYILNWSIKARVTRKSPIKTFRAVNGQRRSFSVVLKDTTGTEIEAVFY 192
Query: 275 NAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEI-FLDMTSMVQLCYEDDASIP 333
+ ++FY + +Y S G + + + ND I F ++++ D I
Sbjct: 193 DGDLERFYDLLVLENVYCFSNGIVVQNSNKYGYTANDYTIKFGSRAKIIEV--PDLGDIG 250
Query: 334 RQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVE 393
+++ + D+ + +VD +GVV+ I P + K T KR++ L D S ++
Sbjct: 251 FLSYNYMKLADIV-VHKPKIVDFLGVVTQIYPVEKIDSKYRTNISKRSVELCDQSNLLID 309
Query: 394 LTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAH 453
LTLW DD + + ++G F +L++K R+S + G + +STT + P
Sbjct: 310 LTLW-----DD--QADNFPENGKF-VLSLKGARISTYRGVSLTALSTTLIDTNPSGEMPD 361
Query: 454 RLKEWFEKEGKNTQSVS-ISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVY 512
L++WFE + + +SR K SQ+ D G + + I
Sbjct: 362 NLRKWFENAKSSVMDMEKVSRSGTFASPLLDLKEASQVYDSFKGESFYHSFCGMVIDISV 421
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGD-GRWHCDRCDQSVVECDYRYILQFQIQDHTG 571
I+ Y ACP + C K + + + + C+RC Q V +RY I DHTG
Sbjct: 422 IR--KLYYCACP----NPHCRGKGLYSPEPDLYLCERCHQRVEHPRHRYAFSMVIADHTG 475
Query: 572 LTWVTAF--QECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETF 629
V+ E+I+G D + + D D + ++ F + KL+ K +TF
Sbjct: 476 SIRVSLLGNDILGEKIIGRKIDD-WVQETKDLTDIQIRTLLCPVFFNFFKLKLRTKLDTF 534
Query: 630 SDEQRVKSTVVKAERYNY 647
+ E RVK++V + +R ++
Sbjct: 535 NAETRVKTSVFQGDRLSF 552
>gi|395840382|ref|XP_003793039.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Otolemur garnettii]
Length = 475
Score = 126 bits (316), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 101/171 (59%), Gaps = 6/171 (3%)
Query: 485 KTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRW 544
KT++++K E LG +K D+ + AT+VY++ +N Y A P + CNKKV++ +G +
Sbjct: 302 KTLNEVKSENLGQGDKADYFSSVATVVYLRKENSMYQAYPT----QDCNKKVIDQQNGLY 357
Query: 545 HCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDE 604
C++CD YR IL I D WVT FQE AE I+G + L LK ++N++
Sbjct: 358 RCEKCDSEFPNFKYRMILSVNIADFQDNQWVTCFQESAEAILGQNTAYLGELK--EKNEQ 415
Query: 605 KFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
F EV +NA F + F+++VK E ++DE R+K+TV+ + +Y R ++
Sbjct: 416 AFEEVFQNANFRSFTFRIRVKLENYNDESRIKATVMDVKPVDYREYGRRLI 466
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 150/316 (47%), Gaps = 63/316 (19%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQV++++ + + + R+R+++SDG + MLATQ N LV L +
Sbjct: 23 PILQVINVRPITTG------NSPPRYRLLMSDGLNTLSSFMLATQLNPLVEQERLSSNCI 76
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
++ +F N +++ R +VI+M+L+V+ S E G GNP
Sbjct: 77 CQINQFIVNTLKDGRRVVILMELEVL----------------KSAEAVGLKIGNPVPYNE 120
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGS-GSFSNQSASFSNPR 178
G H G VP+ S P+ +P+ GS G S S SF +
Sbjct: 121 G-----H---------GQQQVVPSPATAAS---PSTSRPQPQNGSLGMGSAVSKSFGASK 163
Query: 179 PEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARV 238
F +P + T ++++PIA+L PY KWTI ARV
Sbjct: 164 -TFGKPGGMSLPNTSGG-------------------TQAKVVPIASLTPYQSKWTICARV 203
Query: 239 TAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSL 298
T K ++R ++N RG+GK+F +L+D GEIR T FN D+F+ +E K+Y ++G+L
Sbjct: 204 TNKSQIRTWSNSRGEGKLFSVELVD-QSGEIRATAFNDQVDKFFPLIEVNKVYYFTKGTL 262
Query: 299 KPAQKNFNHLHNDLEI 314
K A K F+ + ND E+
Sbjct: 263 KIANKQFSAVKNDYEM 278
>gi|401406884|ref|XP_003882891.1| Replication protein A, 70 kDa DNA-binding subunit, related
[Neospora caninum Liverpool]
gi|325117307|emb|CBZ52859.1| Replication protein A, 70 kDa DNA-binding subunit, related
[Neospora caninum Liverpool]
Length = 621
Score = 126 bits (316), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 151/648 (23%), Positives = 259/648 (39%), Gaps = 127/648 (19%)
Query: 29 MVLSDGSRSQQGML----ATQRNELVTSGLLQIGSV---VRLTKFTCNVIQNRMIVIVMD 81
++ +DGSR G L R E +++ + GSV + L +F+ + R V +
Sbjct: 40 LLATDGSRDASGALQHGRVFARREDLSADFMTGGSVKPVILLDRFSVQTVGGRRCVFALS 99
Query: 82 LDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAV 141
L V D+ E P S P + + D
Sbjct: 100 LRVSSDRL---------------ELPASTRFAPHGG-------------LDESADDAGKA 131
Query: 142 PAARHVG--SNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYM- 198
A+R +G S+ PP+ + E S P E P + A+ +
Sbjct: 132 TASRELGACSSAPPHADEAE-----------SRRSDTPAQEAEAPPPTQNAKARRGREQG 180
Query: 199 QSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFH 258
+ + G + ++ I LN Y W I+ RV K +LR + N RG+ +VF
Sbjct: 181 KRGRFHVQTGGAVARQKRGILVNIKDLNSYSQDWMIRGRVADKTDLRLFANPRGESQVFA 240
Query: 259 FDLLDS----------------DGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
++D GEIR + F VA ++ ++E G++Y SRG++ A
Sbjct: 241 ATIIDHLFEVVLGRCYVSPFVCKKGEIRGSFFGGVAAAWHPRLEVGRVYQFSRGTIDTAN 300
Query: 303 KNFNHLHNDLEI-FLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMEN--NSVVDLIGV 359
K +N L ++ EI F D +V++ +DD SIP Q F + + E+ SVVD+IG
Sbjct: 301 KKYNSLSHEYEIKFDDRAVIVEV--DDDPSIPAQIFSPVKLATLTTDESLLGSVVDVIGF 358
Query: 360 VSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPI 419
V+ T S++ + E Q++ + + D S +V +TLW L+ + + P+
Sbjct: 359 VTSFCATHSVLARE--EVQRKEMTVVDDSSAAVTVTLWEQHAT--ALKDSVLAER---PL 411
Query: 420 LAVKAGRVSDFNGKV-VGTISTTQLFIEPD-FPEAHRLKEWFEKEGKNTQSVSISRDSLS 477
+A+KA RVS++ GKV + + S + L ++P +A RL+ W+E EG+ + S
Sbjct: 412 VAIKALRVSEYAGKVSLTSTSRSVLLVDPHGLEDADRLEAWWEAEGEKAHRARVDPSHSS 471
Query: 478 VGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVM 537
V ++ I T+E ++A +Y C Y + GD P
Sbjct: 472 V--------ITDISTVNKRTQE------LTAGALYFNCLAVIYD----VHGDSPV----- 508
Query: 538 NNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMG---MSAKDLY 594
+ + L + D TG A EC ++++G ++ +
Sbjct: 509 --------------------WLWSLSLTLADLTGSLDCVALDECGQQVVGTLQVTPDTIQ 548
Query: 595 SLKY--VDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVV 640
L+ D F +V+ + + +L V+ F E R +V
Sbjct: 549 MLERGGTDTFGRTFADVMDLLRYREVRVRLCVRSYEFRGEARTTCKIV 596
>gi|242086609|ref|XP_002439137.1| hypothetical protein SORBIDRAFT_09g001220 [Sorghum bicolor]
gi|241944422|gb|EES17567.1| hypothetical protein SORBIDRAFT_09g001220 [Sorghum bicolor]
Length = 388
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 102/188 (54%), Gaps = 6/188 (3%)
Query: 485 KTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRW 544
KTV++I++ LG KP+ TV A + + ++ CY ACP+++ CN + +NG W
Sbjct: 159 KTVAEIRN-SLGYLVKPELFTVKAILSVMNSESLCYAACPLVVNGYQCNGAITSNGYEWW 217
Query: 545 HCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDE 604
+CD C + CDYRY + Q+ D TG + T Q EEI G +A++LY +KY Q+
Sbjct: 218 NCDECSMTFAACDYRYKIFVQLADSTGEIYATTSQAVGEEIFGQTARELYLVKYEKQDHA 277
Query: 605 KFGEVVRNATFTKYLFKLKVKEETFSDEQRV--KSTVVKAERYNYSSETRFILDLMDKLK 662
++ ++V +YL ++K+ E FSDE +VK E N S+E R L+ +
Sbjct: 278 QYNKIVMGVQNCEYLLEVKLNLEAFSDESETLPMFIIVKVESLNPSAENR---PLVRRTS 334
Query: 663 SGDSTSFA 670
G T F+
Sbjct: 335 VGMRTGFS 342
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 66/114 (57%), Gaps = 8/114 (7%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQV+D++ VV RFR+VLSDG + Q ML T + V G ++ GS++
Sbjct: 42 PVLQVVDVQAVVGSTSSA------RFRLVLSDGVYTLQSMLGTADDAPVRDGSIRKGSII 95
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIG--KPVPAQRPSSNEQPGSVTGN 113
RL +FTC+ IQ+R +++V+ D++ + D IG KP + + PG+ + N
Sbjct: 96 RLREFTCSTIQSRRVIVVLQHDILQREHDIIGNSKPFEMKNVPKEQCPGTTSVN 149
>gi|401885438|gb|EJT49555.1| damaged DNA binding protein [Trichosporon asahii var. asahii CBS
2479]
Length = 182
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 108/185 (58%), Gaps = 7/185 (3%)
Query: 477 SVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKV 536
+V R D KT+ Q KDE LG +K D+ +V ATI+YIK + F Y ACP CNKK+
Sbjct: 3 AVSRPDEIKTIGQAKDEQLGMTDKTDYFSVCATILYIKQETFSYPACP----GEGCNKKL 58
Query: 537 MNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSL 596
++ G W C++C+++ +RYILQ + DHTG W+T F E E+IMG+SA +L+ L
Sbjct: 59 IDEG-AEWRCEKCNRTYPGPVHRYILQMNVIDHTGSFWITGFNEVGEQIMGVSANELFKL 117
Query: 597 KYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILD 656
K ++D + + A ++ FK+ K++ F+D RV+ NY+ ++ ++D
Sbjct: 118 K--QESDPEAEKYFTRAAGREWDFKIMAKQDFFNDTARVRYQARSCAPINYAQSSQALVD 175
Query: 657 LMDKL 661
++ +
Sbjct: 176 KIEAM 180
>gi|5326840|gb|AAD42062.1|AF132307_1 replication protein A large subunit [Cryptosporidium parvum]
Length = 473
Score = 125 bits (315), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 119/488 (24%), Positives = 229/488 (46%), Gaps = 55/488 (11%)
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
+PI +N +IK R+ K L+ + + FH D++D D IRV + A+
Sbjct: 1 MPIREVNVNRQTISIKGRIIQKSSLQIL---KSGLRFFHLDIIDKDNDVIRVKFWRXKAE 57
Query: 280 QFYHQVEAGKIYLV--SRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQ-Q 336
++++ ++ G +Y++ + + + FN N EI V+ DD SI + +
Sbjct: 58 EYHNILQHGSVYILKCTGNDVVVSNTKFNDTSNPYEINFSDRCFVRKVENDDDSIGKAPK 117
Query: 337 FHFRPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELT 395
+ F + D+ + S+VDLIG+V + SP+ ++ RKN E +RT+ + D +G + +T
Sbjct: 118 YVFTTVKDIREIPVPSIVDLIGIVRHFSPSTKVISRKNNDEVSRRTISVVDKTGFLINIT 177
Query: 396 LWGNFCNDDGLRLQHMCDSGVF--PILAVKAGRVSDFNGKVVGTIS-TTQLFIEPDFPEA 452
LWG L + D P++A+K+ ++ ++ G+ T++ + + D +
Sbjct: 178 LWG--------ELAEVSDEKFLGNPVVALKSIQIREYQGRQGSTLNGRSNMEFSIDDGKM 229
Query: 453 HRLKEWFEKEGKNTQSVSIS-------------RDSLSVGRA--DIRKTV------SQIK 491
L++W++ G + + SIS D L GR DIR + S
Sbjct: 230 EELRDWYDSIGSSIKFESISNISSNESPNNFRVNDKLYSGRTLKDIRNRMEDNEFSSTPS 289
Query: 492 DEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQ 551
+ + K I V+ + K + Y ACPI C KKV+ + +C++CD+
Sbjct: 290 FQVIARISKIGSINVNQQVSGDKGGSLTYDACPI------CKKKVLFSTS---YCEKCDE 340
Query: 552 SVVECDYRYILQFQIQDHTGLTWVTAFQECAEE-IMGMSAKDLYSLKYVDQNDEKFGEVV 610
SVV + +++ I+DHT V F E I +SA + K ++QN++K +
Sbjct: 341 SVVP-ETKFLFPVTIEDHTCSLTVQCFHEIGSTFIKELSAS---ACKEMEQNNDKKLNFI 396
Query: 611 RN--ATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSGDSTS 668
N + Y K+++K E ++++++ ++ + AE + + + +L+ + + G +
Sbjct: 397 LNLQCMWRHYNLKIQLKAEEYNNQKKTRAIIQSAEPIDLNQISYLMLESISQSILGKTNK 456
Query: 669 FALKAENI 676
+L +NI
Sbjct: 457 RSLFEDNI 464
>gi|384494556|gb|EIE85047.1| hypothetical protein RO3G_09757 [Rhizopus delemar RA 99-880]
Length = 500
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 144/312 (46%), Gaps = 33/312 (10%)
Query: 329 DASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMS 388
D++IP+ F F I D+E E + V+ G + KR+L + D +
Sbjct: 218 DSAIPQTNFSFVKIIDLEKTEKDETVE--------------NNLTGWQINKRSLLIIDDT 263
Query: 389 GRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPD 448
++LT+WG+ + DS PI+A K RV+++NG+ + + L P
Sbjct: 264 EHPIQLTVWGSVAEE--------FDSNNTPIIACKGLRVNEYNGRSLSLPTFGTLTKNPS 315
Query: 449 FPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADI-RKTVSQIKDEGLGTKEKPDWITVS 507
PEAH L +WF + +N Q + IS SL + +I + Q+ + L T D+
Sbjct: 316 IPEAHHLYQWFSFKKQNIQQL-ISLKSLKGEKDNIPWINLVQLYNGHLNTSYTLDYFMFR 374
Query: 508 ATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQ 567
TI YIK D Y CP C KK + + W C++C + + ++RY+L I
Sbjct: 375 GTISYIKHDTIAYPGCP------TCAKK-LQQKESSWECEQCKKILSVPNWRYVLFAGIS 427
Query: 568 DHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEE 627
D +G + T F A I+GM+A +L LK D++ E F + A F Y FK + K
Sbjct: 428 DFSGQAFFTIFDNVAVHIIGMTAAEL--LKIADRSMEIFQKEFTKALFKTYNFKARAKAV 485
Query: 628 TFSDEQRVKSTV 639
++ +K +
Sbjct: 486 QYNVSWLIKEFI 497
Score = 48.1 bits (113), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 59/104 (56%), Gaps = 8/104 (7%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P+LQ+++ ++V+ + R++ ++SDG G L L+ +G ++ S+V
Sbjct: 26 PILQLINFRVVL-------LNGHVRYKAIVSDGIHFIPGWLYVCLGVLIENGQIKKNSIV 78
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVI-IDKCDPIGKPVPAQRPSSN 104
R+ +++CN+I N+ +++ +D + D + +GKP+ + S++
Sbjct: 79 RVKEYSCNLISNKKWMLIQKVDFLSTDVQEKVGKPISIELGSAS 122
>gi|167376383|ref|XP_001733974.1| replication protein A 70 kDa DNA-binding subunit [Entamoeba dispar
SAW760]
gi|165904711|gb|EDR29890.1| replication protein A 70 kDa DNA-binding subunit, putative
[Entamoeba dispar SAW760]
Length = 588
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 116/439 (26%), Positives = 199/439 (45%), Gaps = 49/439 (11%)
Query: 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAV 277
++ P + L + K IK RV +K + Y G +F F L D DG EI+ TCFN V
Sbjct: 145 KVTPFSLLTTFGSKLIIKGRVVSKNDKFKY----AKGNLFSFVLQDKDGAEIKATCFNDV 200
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQ-KNFNHLHN-DLEIFLDMTSMVQLCYEDDASIPRQ 335
D+ + Q++ G+ Y +++ K + K + DL++ + +++Q ++ I
Sbjct: 201 CDEKFDQIKVGETYYITKADYKQSNGKGYRSAKMIDLDMIIGKYTIIQKSSDEVPMIS-- 258
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
PI D+ ++ D+ + P + KN E K TL D S +VE+
Sbjct: 259 --SIVPIADLVESPVDATYDICAFLVDKGPEQTY--KN--EKAKVTLTFMDQSSYAVEVD 312
Query: 396 LWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR- 454
W N+D + + M ++GV +L + R+ +F K + T++ D +
Sbjct: 313 FW----NEDIDKTKDM-ENGVVYVLT--SLRLREFKYKTLTVTKATKILSNTDIEQYDEA 365
Query: 455 -LKEWFEKEGKNTQSVSIS-------RDSLSVGRADIRKTVSQI----KDEGLGTKEKPD 502
L F +E T+ +++S ++ D+R T Q+ K E T+ D
Sbjct: 366 SLVNKFIQEHTTTEGITVSDLRYLANETTVEFKAGDVR-TADQLYCLRKLEEKTTETSED 424
Query: 503 W-ITVSATIVYIKCDN-FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRY 560
V K D+ FCY +CP C KK+ DG C++C Q ++ R+
Sbjct: 425 VKANVYGYFTMFKVDSGFCYLSCP------DCKKKI---ADGSTFCEKC-QKDIQPMRRF 474
Query: 561 ILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLF 620
I++ I D T WVT F E ++I+G SA ++Y + +Q+ E F + + TF + F
Sbjct: 475 IVRASIADSTSSVWVTIFDEEMKKIIGKSADEMYEMN--EQDSESFENLFKQLTFIECRF 532
Query: 621 KLKVKEETFSDEQRVKSTV 639
L K++ ++ E R + TV
Sbjct: 533 HLVCKKDEYNGETRTRYTV 551
>gi|66359222|ref|XP_626789.1| replication protein A1 large subunit [Cryptosporidium parvum Iowa
II]
gi|46228369|gb|EAK89268.1| replication protein A1 large subunit [Cryptosporidium parvum Iowa
II]
Length = 484
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 119/488 (24%), Positives = 229/488 (46%), Gaps = 55/488 (11%)
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
+PI +N +IK R+ K L+ + + FH D++D D IRV + A+
Sbjct: 12 MPIREVNVNRQTISIKGRIIQKSSLQIL---KSGLRFFHLDIIDKDNDVIRVKFWRQKAE 68
Query: 280 QFYHQVEAGKIYLV--SRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQ-Q 336
++++ ++ G +Y++ + + + FN N EI V+ DD SI + +
Sbjct: 69 EYHNILQHGSVYILKCTGNDVVVSNTKFNDTSNPYEINFSDRCFVRKVENDDDSIGKAPK 128
Query: 337 FHFRPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELT 395
+ F + D+ + S+VDLIG+V + SP+ ++ RKN E +RT+ + D +G + +T
Sbjct: 129 YVFTTVKDIREIPVPSIVDLIGIVRHFSPSTKVISRKNNDEVSRRTISVVDKTGFLINIT 188
Query: 396 LWGNFCNDDGLRLQHMCDSGVF--PILAVKAGRVSDFNGKVVGTIS-TTQLFIEPDFPEA 452
LWG L + D P++A+K+ ++ ++ G+ T++ + + D +
Sbjct: 189 LWG--------ELAEVSDEKFLGNPVVALKSIQIREYQGRQGSTLNGRSNMEFSIDDGKM 240
Query: 453 HRLKEWFEKEGKNTQSVSIS-------------RDSLSVGRA--DIRKTV------SQIK 491
L++W++ G + + SIS D L GR DIR + S
Sbjct: 241 EELRDWYDSIGSSIKFESISNISSNESPNNFRVNDKLYSGRTLKDIRNRMEDNEFSSTPS 300
Query: 492 DEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQ 551
+ + K I V+ + K + Y ACPI C KKV+ + +C++CD+
Sbjct: 301 FQVIARISKIGSINVNQQVSGDKGGSLTYDACPI------CKKKVLFSTS---YCEKCDE 351
Query: 552 SVVECDYRYILQFQIQDHTGLTWVTAFQECAEE-IMGMSAKDLYSLKYVDQNDEKFGEVV 610
SVV + +++ I+DHT V F E I +SA + K ++QN++K +
Sbjct: 352 SVVP-ETKFLFPVTIEDHTCSLTVQCFHEIGSTFIKELSAS---ACKEMEQNNDKKLNFI 407
Query: 611 RN--ATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSGDSTS 668
N + Y K+++K E ++++++ ++ + AE + + + +L+ + + G +
Sbjct: 408 LNLQCMWRHYNLKIQLKAEEYNNQKKTRAIIQSAEPIDLNQISYLMLESISQSILGKTNK 467
Query: 669 FALKAENI 676
+L +NI
Sbjct: 468 RSLFEDNI 475
>gi|340378814|ref|XP_003387922.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Amphimedon queenslandica]
Length = 240
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 135/287 (47%), Gaps = 52/287 (18%)
Query: 41 MLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQR 100
MLATQ NE +TS + +VR+ K N I + ++I + L V+ D
Sbjct: 1 MLATQLNEKITSNEISKYCIVRVDKMLINSIGAKKVMIFIKLTVLYSAQDV--------- 51
Query: 101 PSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEV 160
G + G P+ L + S P D P AR PP + +V
Sbjct: 52 -------GGMLGTPRQ------LNSDSADSNSTTPTVKDE-PLAR------PPLAQRSQV 91
Query: 161 GAGSGSFSNQSASFSNPRPEFSRPYASNYARTP----QAPYMQSPSMYANRGLVGKSEVP 216
G + Q P F Y ++ RT + MQSP G ++
Sbjct: 92 GVAPAPVAPQPIQTP---PRF---YGNSAQRTGGMGGASNLMQSPG--------GGTK-- 135
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
++PI ALNPY KWTIKARVT+K LRHYNN RG+G++ + +D GEIR T FN
Sbjct: 136 -NVVPITALNPYQNKWTIKARVTSKPPLRHYNNSRGEGRILTLEFVDHS-GEIRATAFNE 193
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQ 323
AD+F+ VE K+Y VSRG +KPA K + + +ND E+ L + ++
Sbjct: 194 DADRFFPNVEVNKVYYVSRGRIKPANKIY-YANNDYELTLGAETTIE 239
>gi|47227766|emb|CAG08929.1| unnamed protein product [Tetraodon nigroviridis]
Length = 193
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 107/177 (60%), Gaps = 6/177 (3%)
Query: 485 KTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRW 544
KT++ +K E LG EK D+ T ATIV+++ +N Y ACP + CNKKV++ +G +
Sbjct: 22 KTLADVKSEHLGHGEKADYYTCIATIVFLRKENCLYQACP----SQDCNKKVVDQQNGMF 77
Query: 545 HCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDE 604
C++CD+ YR IL I D+ WVT FQE AE I+G +A L LK + N+
Sbjct: 78 RCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLK--ESNEA 135
Query: 605 KFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
F EV + A F ++F+ +VK ET++DE R+K+TV++ + ++ ++ ++ + KL
Sbjct: 136 AFNEVFQQANFNSFIFRSRVKLETYNDESRIKATVMEVKPVDHKDYSKRLIMNIRKL 192
>gi|67615068|ref|XP_667409.1| replication protein A large subunit [Cryptosporidium hominis TU502]
gi|54658542|gb|EAL37178.1| replication protein A large subunit [Cryptosporidium hominis]
Length = 473
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 118/491 (24%), Positives = 231/491 (47%), Gaps = 61/491 (12%)
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
+PI +N +IK R+ K L+ + + FH D++D D IRV + A+
Sbjct: 1 MPIREVNVNRQTISIKGRIIQKSSLQIL---KSGLRFFHLDIIDKDNDVIRVKFWRQKAE 57
Query: 280 QFYHQVEAGKIYLV--SRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQ-Q 336
++++ ++ G +Y++ + + + FN N EI V+ DD SI + +
Sbjct: 58 EYHNILQHGSVYILKCTGNDVVVSNTKFNDTSNPYEINFSDRCFVRKVENDDDSIGKAPK 117
Query: 337 FHFRPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELT 395
+ F + D+ + S+VDLIG+V + SP+ ++ RKN E +RT+ + D +G + +T
Sbjct: 118 YVFSTVKDIREIPVPSIVDLIGIVRHFSPSTKVISRKNNDEVSRRTISVVDKTGFLINIT 177
Query: 396 LWGNFCNDDGLRLQHMCDSGVF--PILAVKAGRVSDFNGKVVGTIS-TTQLFIEPDFPEA 452
LWG L + D P++A+K+ ++ ++ G+ T++ + + D +
Sbjct: 178 LWG--------ELAEVSDEKFLGNPVVALKSIQIREYQGRQGSTLNGRSNMEFSIDDGKM 229
Query: 453 HRLKEWFEKEGKNTQSVSIS-------------RDSLSVGRA--DIRKTVSQIKDEGLGT 497
L++W++ G + + SIS D L GR DIR ++++D +
Sbjct: 230 EELRDWYDSIGSSIKFESISNISSNESPNNFRVNDKLYSGRTLKDIR---NRMEDNEFSS 286
Query: 498 KE---------KPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDR 548
+ K I V+ + K + Y ACPI C KKV+ + +C++
Sbjct: 287 TQSFQVIARISKIGSINVNQQVSGDKGGSLTYDACPI------CKKKVLFSTS---YCEK 337
Query: 549 CDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEE-IMGMSAKDLYSLKYVDQNDEKFG 607
CD+SVV + +++ I+DHT V F E I +SA + K ++QN++K
Sbjct: 338 CDESVVP-ETKFLFPVTIEDHTCSLTVQCFHEIGSTFIKELSAS---ACKEMEQNNDKKL 393
Query: 608 EVVRN--ATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSGD 665
+ N + Y K+++K E ++++++ ++ + AE + + + +L+ + + G
Sbjct: 394 NFILNLQCMWRHYNLKIQLKAEEYNNQKKTRAIIQSAEPIDLNQISYLMLESISQSILGK 453
Query: 666 STSFALKAENI 676
+ L +N+
Sbjct: 454 TNKRYLFEDNV 464
>gi|340378810|ref|XP_003387920.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Amphimedon queenslandica]
Length = 251
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/287 (33%), Positives = 136/287 (47%), Gaps = 52/287 (18%)
Query: 41 MLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQR 100
MLATQ NE +TS + +VR+ K N I + ++I + L V+ D
Sbjct: 1 MLATQLNEKITSNEISKYCIVRVDKMLINSIGAKKVMIFIKLTVLYSAQDV--------- 51
Query: 101 PSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEV 160
G + G P+ L + S P D P AR PP + +V
Sbjct: 52 -------GGMLGTPRQ------LNSDSTDSNSVTPTVKDE-PLAR------PPLAQRSQV 91
Query: 161 GAGSGSFSNQSASFSNPRPEFSRPYASNYARTP----QAPYMQSPSMYANRGLVGKSEVP 216
G + Q P P F Y ++ RT + MQSP G ++
Sbjct: 92 GVAPAPVAPQP--IQTP-PRF---YGNSAQRTGGMGGASNLMQSPG--------GGTK-- 135
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
++PI ALNPY KWTIKARVT+K LRHYNN RG+G++ + +D GEIR T FN
Sbjct: 136 -NVVPITALNPYQNKWTIKARVTSKPPLRHYNNSRGEGRILTLEFVDHS-GEIRATAFNE 193
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQ 323
AD+F+ VE K+Y VSRG +KPA K + + +ND E+ L + ++
Sbjct: 194 DADRFFPNVEVNKVYYVSRGRIKPANKIY-YANNDYELTLGAETTIE 239
>gi|222629943|gb|EEE62075.1| hypothetical protein OsJ_16859 [Oryza sativa Japonica Group]
Length = 207
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 78/109 (71%), Gaps = 3/109 (2%)
Query: 215 VPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCF 274
+ + + PIAAL+PY KWTIKARVTAK L+H +N RG+ K F FDLLD GGE+ CF
Sbjct: 80 IDTSLTPIAALSPYKCKWTIKARVTAKSGLQHLSNDRGEAKFFDFDLLDEQGGEMLAKCF 139
Query: 275 NAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQ 323
++ A++FY +E K+YL+SRG +KPAQ+ FN +D E+ LD ++ V+
Sbjct: 140 SSAAEKFYGLIEVDKVYLISRGLVKPAQEPFN---SDYELALDASASVE 185
>gi|145514786|ref|XP_001443298.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124410676|emb|CAK75901.1| unnamed protein product [Paramecium tetraurelia]
Length = 632
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 102/425 (24%), Positives = 193/425 (45%), Gaps = 36/425 (8%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
++ I L P M + IK R+T+K + + + G G++F +++DS+ I+ FN
Sbjct: 203 LLKITELYPGMRGFKIKGRITSKSDKTQF--KSGKGQLFSIEIIDSEKSTIQGVFFNNQC 260
Query: 279 DQFYHQVEAGKIYLVSRGSLKP---AQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQ 335
D+FY ++ GK+Y G +K + KN N ++ +I + S + ED I
Sbjct: 261 DKFYDLIDLGKVYYFENGQVKTNRYSSKNQNQ--SEYQIHFEEASKISEALED-KEIDAF 317
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F + I D++ + + D++GV++ + P + K+ K+ + L D + R +++
Sbjct: 318 PFQIKQIGDIDNLSQDDKCDILGVITEVKPLTQVTTKSNENKAKKNITLFDQTQRGIDIV 377
Query: 396 LWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRL 455
LWG + Q D I+A + +V+D+ T++ + + E D + ++
Sbjct: 378 LWGA----QAEKWQFQKDE----IVAFRGLKVTDYQTIRSLTVTNSTTY-EKDLTKLQKI 428
Query: 456 ---KEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKD--EGLGTKEKPDWITVSATI 510
+++++ +N + A + QIK EG + + V A I
Sbjct: 429 NGFQDFYDFYSQNKDFIESKPKESKKKFA--LSYIEQIKKDFEGQRNNKLTKFYEVRAYI 486
Query: 511 VYIKCDNFCYTACPIMIGDRPCNKK-VMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDH 569
I Y C I C +K V+ ++ C C+Q+ + Y+YI +I D
Sbjct: 487 TTIFTKLLYYEGCDI------CKRKVVLVQSTKQFFCQNCNQNFNKPSYKYIFNAKIADT 540
Query: 570 TGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETF 629
TG V+ + + I+ +S D + K +Q D E+++ A+F +Y F + K ET+
Sbjct: 541 TGNLPVSVSNDQGQSILKLSC-DEFKAKEKNQQD----EIIKRASFQQYRFLIIGKMETY 595
Query: 630 SDEQR 634
+DE R
Sbjct: 596 NDESR 600
>gi|403222035|dbj|BAM40167.1| uncharacterized protein TOT_020000429 [Theileria orientalis strain
Shintoku]
Length = 463
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 117/493 (23%), Positives = 216/493 (43%), Gaps = 74/493 (15%)
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
PI + Y+ WTI +V K +LR +GD +FH D++D +G IR + A+
Sbjct: 5 FPIKDITTYINNWTILGKVVDKSKLRSI---KGDNSLFHIDIVDKNGDTIRAKFWGVAAN 61
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
++ ++ G +Y S+G++ + K FN L + EI + S+++ E + + + F
Sbjct: 62 KWNEILQKGSVYTFSKGTVNLSNKKFNTLPHKYEITFNTDSLIEPSDEVNEINVERNYDF 121
Query: 340 RPINDVEGMENNS--VVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLW 397
+ D++ + VVDL+ ++P + K ET++R+L + D + +E+T+W
Sbjct: 122 VSLRDIKSTSRDPPFVVDLLCFAKSLTPISVTNTKYNKETKRRSLFVVDDTSYELEVTVW 181
Query: 398 GNFCNDDGLRLQHMCDSGVF------PILAVKAGRVSDFNGKVVGTI---STTQLFIEPD 448
G+ M +S +F P++ + + ++NG +G S +L
Sbjct: 182 GD-----------MTESSIFDNILDKPVI-ISQVTIKEWNGGRIGHTGYSSDIKLASANS 229
Query: 449 FPEAHR---LKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWIT 505
R L+ W+++ + + + + G R+T E + TK K + T
Sbjct: 230 VRNKDRLATLESWYQQALQQNEGFKSMK---AQGGLSGRETYEFSTIENVVTKGKG-YFT 285
Query: 506 VSATIVYIKCDN------FCYTACPIMIGDRPCNKKVMNNGDGR-WHCDRCDQSVVECDY 558
+ + + N Y ACP C+KK +N D + C CD S+V+ +
Sbjct: 286 FNCKLRKLFWKNKDGSARLWYKACP------NCHKKAINEQDSNVYRCISCDDSIVQPEP 339
Query: 559 RYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKY 618
RY + D +G T + + ++++G+S ++L D E +RN
Sbjct: 340 RYSFSCVLIDFSGQIVTTVYGDMGKKLLGLSEREL---------DGMDSEQLRNTLDFDV 390
Query: 619 LFK-LKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSGDSTSFALKAENII 677
L K LKV S K+ YN S T F + ++++ ++A +AEN++
Sbjct: 391 LHKDLKV------------SGFFKSRVYNGESRTVFNITALEEV------NYAKEAENLL 432
Query: 678 PKPEMTYTGTGNI 690
K E+TY N
Sbjct: 433 EKMELTYDAVENF 445
>gi|67468384|ref|XP_650233.1| replication factor A protein 1 [Entamoeba histolytica HM-1:IMSS]
gi|56466826|gb|EAL44846.1| replication factor A protein 1, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 588
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 115/439 (26%), Positives = 199/439 (45%), Gaps = 49/439 (11%)
Query: 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAV 277
+I P + L + K IK RV +K + Y G +F F L D DG EI+ TCFN V
Sbjct: 145 KITPFSLLTTFGSKLIIKGRVVSKNDKFKY----AKGNLFSFVLQDKDGAEIKATCFNDV 200
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQ-KNFNHLHN-DLEIFLDMTSMVQLCYEDDASIPRQ 335
D+ + Q++ G+ Y +++ K + K + DL++ + +++Q ++ I
Sbjct: 201 CDEKFDQIKVGETYYITKADYKQSNGKGYRSAKMIDLDMIIGKYTIIQKSSDEVPMIS-- 258
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
PI D+ ++ D+ + P + KN E K TL D S +VE+
Sbjct: 259 --SIVPIADLVESPVDATYDICAFLVDKGPEQTY--KN--EKAKVTLTFMDQSSYAVEVD 312
Query: 396 LWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR- 454
W N+D + + M ++GV +L + ++ +F K + T++ D +
Sbjct: 313 FW----NEDIDKTKDM-ENGVVYVLT--SLKLKEFKYKTLTVTKATKILSNTDIEQYDEA 365
Query: 455 -LKEWFEKEGKNTQSVSIS-------RDSLSVGRADIRKTVSQI----KDEGLGTKEKPD 502
L F +E + +++S ++ DIR T Q+ K E ++ D
Sbjct: 366 SLVNKFIQEHTTPEGITVSDLRYLANETTVEFKSGDIR-TADQLYCLRKLEEKTSETSED 424
Query: 503 W-ITVSATIVYIKCDN-FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRY 560
V K DN FCY +CP C KK++ +G C++C Q ++ R+
Sbjct: 425 VKANVYGYFTMFKVDNGFCYLSCP------DCKKKIV---EGSTFCEKC-QKDIQPMRRF 474
Query: 561 ILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLF 620
I++ I D T WVT F E ++I+G SA ++Y + +Q+ E F + + TF + F
Sbjct: 475 IVRASIADSTSSIWVTIFDEEMKKIIGKSADEMYEIN--EQDSELFENLFKQLTFIECRF 532
Query: 621 KLKVKEETFSDEQRVKSTV 639
L K++ ++ E R + TV
Sbjct: 533 HLICKKDEYNGETRTRFTV 551
>gi|407037414|gb|EKE38631.1| replication factor A protein 1, putative [Entamoeba nuttalli P19]
Length = 588
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 114/439 (25%), Positives = 199/439 (45%), Gaps = 49/439 (11%)
Query: 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAV 277
+I P + L + K IK RV +K + Y G +F F L D DG EI+ TCFN V
Sbjct: 145 KITPFSLLTTFGSKLIIKGRVVSKNDKFKY----AKGNLFSFVLQDKDGAEIKATCFNDV 200
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQ-KNFNHLHN-DLEIFLDMTSMVQLCYEDDASIPRQ 335
D+ + Q++ G+ Y +++ K + K + DL++ + +++Q ++ I
Sbjct: 201 CDEKFDQIKVGETYYITKADYKQSNGKGYRSAKMIDLDMIIGKYTIIQKSSDEVPMIS-- 258
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
PI D+ ++ D+ + P + KN E K TL D S +VE+
Sbjct: 259 --SIVPIADLVESPVDATYDICAFLVDKGPEQTY--KN--EKAKVTLTFMDQSSYAVEVD 312
Query: 396 LWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR- 454
W N+D + + M ++GV +L + ++ +F K + T++ D +
Sbjct: 313 FW----NEDIDKTKDM-ENGVVYVLT--SLKLKEFKYKTLTVTKATKILSNTDIEQYDEA 365
Query: 455 -LKEWFEKEGKNTQSVSIS-------RDSLSVGRADIRKTVSQI----KDEGLGTKEKPD 502
L F +E + +++S ++ D+R T Q+ K E ++ D
Sbjct: 366 SLVNKFIQEHTTPEGITVSDLRYLANETTVEFKSGDVR-TADQLYCLRKLEEKTSETSED 424
Query: 503 W-ITVSATIVYIKCDN-FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRY 560
V K DN FCY +CP C KK++ +G C++C Q ++ R+
Sbjct: 425 VKANVYGYFTMFKVDNGFCYLSCP------DCKKKIV---EGSTFCEKC-QKDIQPMRRF 474
Query: 561 ILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLF 620
I++ I D T WVT F E ++I+G SA ++Y + +Q+ E F + + TF + F
Sbjct: 475 IVRASIADSTSSIWVTIFDEEMKKIIGKSADEMYEIN--EQDSELFENLFKQLTFIECRF 532
Query: 621 KLKVKEETFSDEQRVKSTV 639
L K++ ++ E R + TV
Sbjct: 533 HLICKKDEYNGETRTRFTV 551
>gi|449705024|gb|EMD45158.1| replication protein 70 kDa DNAbinding subunit, putative [Entamoeba
histolytica KU27]
Length = 588
Score = 119 bits (297), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 112/439 (25%), Positives = 199/439 (45%), Gaps = 49/439 (11%)
Query: 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAV 277
+I P + L + K IK RV +K + Y G +F F L D DG EI+ TCFN V
Sbjct: 145 KITPFSLLTTFGSKLIIKGRVVSKNDKFKY----AKGNLFSFVLQDKDGAEIKATCFNDV 200
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQ-KNFNHLHN-DLEIFLDMTSMVQLCYEDDASIPRQ 335
D+ + Q++ G+ Y +++ K + K + DL++ + +++Q ++ I
Sbjct: 201 CDEKFDQIKVGETYYITKADYKQSNGKGYRSAKMIDLDMIIGKYTIIQKSSDEVPMIS-- 258
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
PI D+ ++ D+ + P + KN E K TL D S +VE+
Sbjct: 259 --SIVPIADLVESPVDATYDICAFLVDKGPEQTY--KN--EKAKVTLTFMDQSSYAVEVD 312
Query: 396 LWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR- 454
W N+D + + M ++GV +L + ++ +F K + T++ D +
Sbjct: 313 FW----NEDIDKTKDM-ENGVVYVLT--SLKLKEFKYKTLTVTKATKILSNTDIEQYDEA 365
Query: 455 -LKEWFEKEGKNTQSVSIS-------RDSLSVGRADIRKT-----VSQIKDEGLGTKEKP 501
L F +E + +++S ++ DIR + +++++ T E
Sbjct: 366 SLVNKFIQEHTTPEGITVSDLRYLANETTVEFKSGDIRIADQLYCLRKLEEKTSETSEDV 425
Query: 502 DWITVSATIVYIKCDN-FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRY 560
V K DN FCY +CP C KK++ +G C++C Q ++ R+
Sbjct: 426 KA-NVYGYFTMFKVDNGFCYLSCP------DCKKKIV---EGSTFCEKC-QKDIQPMRRF 474
Query: 561 ILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLF 620
I++ I D T WVT F E ++I+G SA ++Y + +Q+ E F + + TF + F
Sbjct: 475 IVRASIADSTSSIWVTIFDEEMKKIIGKSADEMYEIN--EQDSELFENLFKQLTFIECRF 532
Query: 621 KLKVKEETFSDEQRVKSTV 639
L K++ ++ E R + TV
Sbjct: 533 HLICKKDEYNGETRTRFTV 551
>gi|402594450|gb|EJW88376.1| BRCA2 repeat family protein [Wuchereria bancrofti]
Length = 539
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 114/458 (24%), Positives = 198/458 (43%), Gaps = 92/458 (20%)
Query: 174 FSNPRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWT 233
FS R F R + T ++P +++P + N + GK + PI L PY W
Sbjct: 110 FSAARRNFKR-----ISLTFKSPLVKNPRL-DNDTVCGK---VGSVTPIKLLTPYCKNWR 160
Query: 234 IKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLV 293
+ +V + E+R QR +F F +D G EIRV+ F +A + + ++Y +
Sbjct: 161 LCIKVISVDEIRCIRGQR----IFAFQAVDDGGVEIRVSAFGDIAHRTSTLICPEQMYYI 216
Query: 294 SRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSV 353
+ S+K A K ++ +D+E+ L S V C + RP
Sbjct: 217 THASVKMANKRYSRNQHDMEVVLRPDSEVTKCTD------------RP------------ 252
Query: 354 VDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCD 413
+SP +KR + + D SG V + LWG
Sbjct: 253 -------QILSPKKI--------CKKREIQIVDDSGYYVTVNLWGQ-------------K 284
Query: 414 SGVFP------ILAVKAGRVSDFNGKV-VGTISTTQLFIEPDFPEAHRLKEWFEK-EGKN 465
+ VFP +LAVK V F G + + ++++T+L +P FPEA L+ W+ K + K
Sbjct: 285 AKVFPSEQYQHVLAVKGLLVRCFQGTLSLVSMASTKLLHDPHFPEADALRSWYSKNKDKA 344
Query: 466 TQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPI 525
+S ++++ V + + + Q+K G + ++A I I +N Y C
Sbjct: 345 FKSATVNQ----VSSFNEHRWIKQLKLSVDG-----HFFNLTAMISSIFIENAVYKGCL- 394
Query: 526 MIGDRPCNKKVMNNGDGRWH-CDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEE 584
C KK++ DG + C +C E Y Y L ++ D TG VTAF +C ++
Sbjct: 395 -----TCKKKLLVEKDGDLYICSKCG-ICNEYKYYYTLHMELFDFTGTVHVTAFDDCGQK 448
Query: 585 IMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKL 622
++G A ++ K++ + +++ ++ F Y+F+L
Sbjct: 449 LIGEQADEV--AKFLRFDRDRYQSSFKSVLFKPYMFRL 484
>gi|84995108|ref|XP_952276.1| replication factor A-related protein [Theileria annulata strain
Ankara]
gi|65302437|emb|CAI74544.1| replication factor A-related protein, putative [Theileria annulata]
Length = 466
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 112/469 (23%), Positives = 201/469 (42%), Gaps = 69/469 (14%)
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
PI + Y WTI +V K L+ +GD D++D +G IR + A+
Sbjct: 6 FPIKNITTYTSNWTILGKVVEKSPLKSL---KGDNAFLFVDIVDKNGDTIRAKFWGLAAN 62
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE-DDASIPRQQFH 338
++ +E G +Y S+GS+ + K FN+ ++ EI ++ E DD ++ R +
Sbjct: 63 KWNDLLEKGNVYTFSKGSVNLSNKKFNNTPHNYEITFGTDGVIDPSDELDDINVER-NYE 121
Query: 339 FRPINDVEGMENNS--VVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTL 396
F + D++ ++ VVD++ V ++P + K +T+KR L++ D + +E+TL
Sbjct: 122 FVTLRDIKSTSRDTPFVVDILCFVKSLTPVSVTNTKFNRDTKKRLLYVVDDTSYELEVTL 181
Query: 397 WGNFCNDDGLRLQHMCDSGVF------PILAVKAGRVSDFNGKVVGTISTTQLFIEPDFP 450
WG M + +F P++ + + ++NG G S T DF
Sbjct: 182 WG-----------QMTELPIFDDILDKPVILSQVT-IKEWNGGRFGQTSLTTDIKLADFQ 229
Query: 451 EAHR------LKEWFEK--------EGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLG 496
L+ W++K + TQ++S SRDS S I+D
Sbjct: 230 SVRNKDRLSTLEAWYQKAMSENETFKTMKTQTMSSSRDSYE---------FSTIEDAMTR 280
Query: 497 TKEKPDWITVSATIVYIKCDN------FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCD 550
K + T + + + N Y +CP C KKV+ + W C CD
Sbjct: 281 AK---GYFTFNCKLRKLFWKNKDGDMRLWYHSCP------NCYKKVVEEQENVWRCITCD 331
Query: 551 QSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSL-KYVDQNDEKFGEV 609
S+V RYI+ D +G T + + ++++G + ++L ++ K +N F +
Sbjct: 332 DSIVTPVLRYIVTCVFVDFSGQMVSTVYSDNGKKLLGYTEQELDAMDKEQLKNTLDFDVL 391
Query: 610 VRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLM 658
R+ + + K +T++ E R V E +Y+ ET +L+ M
Sbjct: 392 HRDFKVSGFF-----KNKTYNGESRNIFNVTNVEEVDYAKETELLLEKM 435
>gi|302824934|ref|XP_002994105.1| hypothetical protein SELMODRAFT_4757 [Selaginella moellendorffii]
gi|300138043|gb|EFJ04826.1| hypothetical protein SELMODRAFT_4757 [Selaginella moellendorffii]
Length = 232
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 118/239 (49%), Gaps = 8/239 (3%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQF 281
IA+L KW+ KARVT K LR + +R G VF+F + DS EIR+ + A
Sbjct: 1 IASLTNRSYKWSFKARVTHKDTLRQFTTKRT-GWVFNFYVADSASSEIRIVSYGETARAL 59
Query: 282 YHQVEAGKIYLVS-RGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
+V G IY+ S L+ A + + EI D M + DD IPR H +
Sbjct: 60 SEKVIQGAIYIFSGTCGLRSASELYTPFPATWEILAD-KKMEIMPTADDECIPRIVLHRK 118
Query: 341 PINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNF 400
I ++ + NS +DL+GVV ++ T R + ++R + + D S SV++ LWG++
Sbjct: 119 CIAEILDITINSYIDLVGVVIWVGLTTVTPRGVESSNKRRMMTICDNSFHSVDVCLWGDY 178
Query: 401 CNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWF 459
+++G +L I+ +K GR+ +FN + V + + L I+ D ++ W+
Sbjct: 179 ADEEGSQLLEN-----ISIVCIKGGRICEFNERSVSVTNVSTLAIDADLDLVQEMRSWY 232
>gi|321470011|gb|EFX80989.1| hypothetical protein DAPPUDRAFT_318086 [Daphnia pulex]
Length = 394
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 108/363 (29%), Positives = 160/363 (44%), Gaps = 57/363 (15%)
Query: 232 WTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIY 291
W IK RVT K NN D K F +L+D GEI F D+F+ E
Sbjct: 41 WLIKVRVTKKTGKILVNNGISDVKYFKMNLIDLWKGEIEAMAFGDECDRFFEIFEVE--- 97
Query: 292 LVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENN 351
C +DD SIP +F+F PI + M+
Sbjct: 98 ---------------------------------CLDDDDSIPNAEFYFVPIKTISTMKPG 124
Query: 352 SVVDLIGVVSYISPTA-SLMRKNGTETQKRTLHL-RDMSGRSVELTLWGNFCNDDGLRLQ 409
S VD+I S++ + L + KR L+L D+SG S+ LT+W + ND Q
Sbjct: 125 SFVDVIADASFVGKVSMGLSQSTQRHYTKRKLNLIDDVSGDSIVLTVWNDLVNDLN---Q 181
Query: 410 HMCDSGVFPILAVKAGRVSDFNGKV-VGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQS 468
H +AV+ ++ ++ GK+ +GT+STT L I E + +F G+ +Q
Sbjct: 182 HDYFGDSVLRIAVRGAQIVEYKGKLELGTVSTTILKIN---EELKDIPGFFNIIGRRSQI 238
Query: 469 VSI---SRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPI 525
I S +S ++ + DI T +IKD L T +P+ +V A I I ++ Y C
Sbjct: 239 APIFEKSYESYAICK-DI-TTFQEIKD--LKTPYRPERYSVRAMISIIIKNSPFYEGCYF 294
Query: 526 MIGDRPCNKKV-MNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEE 584
C KKV N ++C +CD E + IL+FQ+ D +G VT FQE E+
Sbjct: 295 ----EGCRKKVNFNLLTNNYYCSKCDAENPEFRWCLILKFQLNDISGSQRVTCFQEGFED 350
Query: 585 IMG 587
++G
Sbjct: 351 LVG 353
>gi|302756891|ref|XP_002961869.1| hypothetical protein SELMODRAFT_77809 [Selaginella moellendorffii]
gi|300170528|gb|EFJ37129.1| hypothetical protein SELMODRAFT_77809 [Selaginella moellendorffii]
Length = 217
Score = 113 bits (283), Expect = 4e-22, Method: Composition-based stats.
Identities = 69/224 (30%), Positives = 108/224 (48%), Gaps = 11/224 (4%)
Query: 408 LQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQ 467
+Q +SGV PI+ VK G+VSD+NGK + I + + IEP+ L+EW T
Sbjct: 1 IQKRIESGVQPIICVKGGKVSDYNGKSLLAIGVSTILIEPEMEAVADLREWMTLYYNITN 60
Query: 468 SVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMI 527
+ +S + T+S+I L E V AT+ +K D F Y AC ++
Sbjct: 61 FIHLSVSCTT--------TLSEISSMQLKVLESFPIYRVIATMKEMKTDEFYYNACINVV 112
Query: 528 GDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMG 587
+ C +K +G W C C+ +++Y L+ I+D + W AFQE A+EI+G
Sbjct: 113 NAQQCGRKTTQTANG-WFCSYCNIEFANMEFKYALKMCIKDSSSHVWAIAFQEVAQEIVG 171
Query: 588 MSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSD 631
M AK+L +++Y +N + Y FK+ K E + D
Sbjct: 172 MPAKELATMRY--ENYLALSLHIDGIRSKIYNFKIWSKLEKYQD 213
>gi|71030734|ref|XP_765009.1| replication factor A protein [Theileria parva strain Muguga]
gi|68351965|gb|EAN32726.1| replication factor A protein, putative [Theileria parva]
Length = 466
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 108/463 (23%), Positives = 195/463 (42%), Gaps = 57/463 (12%)
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
PI + Y WTI ++ K L+ +GD D++D +G IR + A+
Sbjct: 6 FPIKNITTYTSNWTILGKIVDKSPLKAL---KGDNSFLFVDIVDKNGDTIRAKFWGVAAN 62
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE-DDASIPRQQFH 338
++ +E G +Y S+G++ + K FN ++ EI S + E +D + R +
Sbjct: 63 KWNDLLEKGNVYTFSKGTVNLSNKKFNTTPHNYEITFTTDSKIDPSDELNDIKVERN-YE 121
Query: 339 FRPINDVEGMENNS--VVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTL 396
F + D++ ++ VVD++ V ++P + K +T+KR L++ D + +E+TL
Sbjct: 122 FVTLRDIKSTSRDTPFVVDILCFVKSLTPVSVTNTKFNRDTKKRLLYVVDDTSYELEVTL 181
Query: 397 WGNFCNDDGLRLQHMCDSGVF------PILAVKAGRVSDFNGKVVGTISTTQLFIEPDFP 450
WG M + +F P++ + + ++NG G S DF
Sbjct: 182 WG-----------QMTELPIFEDILDKPVILSQVT-IKEWNGGRFGQTSLNTDIKFADFQ 229
Query: 451 EAHR------LKEWFEK--------EGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLG 496
L+ W++K + TQ++S SR+S D T S+ +
Sbjct: 230 SVRNKDRLSTLEAWYQKAMSENESFKTMKTQTMSSSRESYEFTTIDDALTRSKGYFIFIC 289
Query: 497 TKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVEC 556
K W + Y ACP C KKV+ + W C CD S+V
Sbjct: 290 KLRKLFWKNKDGEM------RLWYHACP------TCLKKVVEEQENVWRCITCDDSIVTP 337
Query: 557 DYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSL-KYVDQNDEKFGEVVRNATF 615
RYI+ D +G + T + E ++++G S ++L ++ K +N F + ++
Sbjct: 338 VLRYIVSCVFVDFSGQLFSTVYSESGKKLLGYSEQELDAMDKEELKNTLDFDVLHKDFKV 397
Query: 616 TKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLM 658
+ + K +T++ E R V E +Y+ E +L+ M
Sbjct: 398 SGFF-----KNKTYNGESRNTFNVTNIEEVDYAKEAESLLERM 435
>gi|356531499|ref|XP_003534315.1| PREDICTED: uncharacterized protein LOC100812465 [Glycine max]
Length = 563
Score = 112 bits (281), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 85/127 (66%), Gaps = 10/127 (7%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQV++L+LV S QQ F +VLSDG QQ ML TQ+N+LV SG LQ GS+V
Sbjct: 334 PVLQVLELELVNS----QQHSASVNFHLVLSDGYHFQQAMLTTQKNQLVRSGKLQKGSIV 389
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVT-GNPQ----- 115
RLT+F CNV+Q+ I++V+DLDV+++KC+ +G+PV A + QP T GN Q
Sbjct: 390 RLTQFVCNVVQSCKIIMVLDLDVVLEKCELLGQPVAAPAEFATGQPSGFTFGNSQSLNSC 449
Query: 116 SNATGVS 122
S+A GVS
Sbjct: 450 SHAGGVS 456
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/121 (53%), Positives = 85/121 (70%), Gaps = 15/121 (12%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQV++ KLV Q QQ +R+R+VLSDGS QQGMLATQ+NEL+ SG LQ G+++
Sbjct: 195 PVLQVIEFKLV----QSQQNSTIERYRVVLSDGSFYQQGMLATQKNELIYSGRLQQGAII 250
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGV 121
RLT+F CNV+QNR I+I++DLDVI +KC+ IG+PV A + G P +ATG
Sbjct: 251 RLTQFICNVVQNRKIIIIVDLDVICEKCELIGEPVAAPK-----------GAPAESATGQ 299
Query: 122 S 122
S
Sbjct: 300 S 300
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 99/157 (63%), Gaps = 9/157 (5%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQV++LK V Q QQ +R+ +VLSDGS QQGMLATQ+N+LV SG LQ GSV+
Sbjct: 24 PVLQVIELKQV----QSQQNSTVERYCVVLSDGSFYQQGMLATQKNDLVHSGKLQKGSVL 79
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQS-NATG 120
RLT+F CNV+QN I+I++DLDVI+D C+ IG+PV + + E PG GN QS N++
Sbjct: 80 RLTQFLCNVVQNHKIIIIIDLDVILDYCELIGQPVSTPKHTPKE-PGVNFGNSQSLNSSS 138
Query: 121 VSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFK 157
+ + VS G + P A N PP Y K
Sbjct: 139 HAGGMNARPNVS---GSSIYYPKANPPARNDPPAYPK 172
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 18/115 (15%)
Query: 689 NIGSRQTAPVVANYVGNNSNAGAASGLLANQMGQ-YGNQYSGSRLPAAGTSAARQSCSSC 747
N+ + Q P N + NS++ G+ NQ+GQ Y +QY+ +AG + SC++C
Sbjct: 466 NLATGQVTPPAYNPI--NSSSDFDFGMPTNQVGQRYESQYN--NFVSAGAPGSYMSCTNC 521
Query: 748 GAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCP 802
G GHSS+ CP+I + P S GG S EC KCH++ HW P
Sbjct: 522 GGSGHSSLLCPNIRNLPLGSGGGA-------------SVECCKCHQSDHWGERLP 563
>gi|297806841|ref|XP_002871304.1| hypothetical protein ARALYDRAFT_908753 [Arabidopsis lyrata subsp.
lyrata]
gi|297317141|gb|EFH47563.1| hypothetical protein ARALYDRAFT_908753 [Arabidopsis lyrata subsp.
lyrata]
Length = 345
Score = 109 bits (273), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 124/254 (48%), Gaps = 34/254 (13%)
Query: 378 QKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGT 437
KR + L D + ++V ++LW + G L M D+ P++A+K+ +V DF
Sbjct: 112 HKRDITLADETKKTVVVSLWNDLATGIGHELLDMADN--HPVIAIKSLKVGDFQ------ 163
Query: 438 ISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSI------SRDSLSVGRADIRKTVSQIK 491
EA +LK W++ EGK T +I S ++ S R +S I
Sbjct: 164 -------------EATKLKSWYDAEGKETSMSAIGSGMGSSANNGSRSMYSDRVFLSHIT 210
Query: 492 DEGLGTKEKPDWITVSATIVYIKCD-NFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCD 550
+EKP + + A I +IK D Y AC + CNKKV D + C+ C
Sbjct: 211 SNPSLGEEKPVFFSTRAYISFIKPDQTMWYRAC------KTCNKKVTEAMDSGYWCEGCL 264
Query: 551 QSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVV 610
+ EC RYI+ ++ D TG TW +AF + AE+I+G +A +L +LK + +F V
Sbjct: 265 KKDQECSLRYIMAVKVSDSTGETWFSAFNDEAEKIIGCTADELNNLKSEEGEVNEFQTKV 324
Query: 611 RNATFTKYLFKLKV 624
+ AT++ +LF++ +
Sbjct: 325 KEATWSSHLFRISI 338
>gi|351700393|gb|EHB03312.1| Replication protein A 70 kDa DNA-binding subunit [Heterocephalus
glaber]
Length = 162
Score = 108 bits (271), Expect = 8e-21, Method: Composition-based stats.
Identities = 58/148 (39%), Positives = 86/148 (58%), Gaps = 6/148 (4%)
Query: 485 KTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRW 544
KT+ ++K E LG +K D+ + AT+VY+ +N Y AC + CNKKV++ +G +
Sbjct: 20 KTLYEVKSENLGQGDKADYFSSVATVVYLHKENCMYLAC----STQDCNKKVIDQQNGLY 75
Query: 545 HCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDE 604
C++CD YR IL I D WVT FQE AE I+G + L LK ++N +
Sbjct: 76 CCEKCDHEFPNFKYRMILLGNILDFQENQWVTCFQESAEAILGQNTAYLGELK--EKNKQ 133
Query: 605 KFGEVVRNATFTKYLFKLKVKEETFSDE 632
F E +NA F ++FK++VK ET++DE
Sbjct: 134 AFEEGFQNANFRSFMFKIRVKLETYNDE 161
>gi|170591825|ref|XP_001900670.1| BRCA2 repeat family protein [Brugia malayi]
gi|158591822|gb|EDP30425.1| BRCA2 repeat family protein [Brugia malayi]
Length = 387
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 94/363 (25%), Positives = 163/363 (44%), Gaps = 61/363 (16%)
Query: 290 IYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASI-PRQQFHFRPINDVEGM 348
+Y ++ S+K A K ++ +D+E+ L S V C + + P+ F F I++++
Sbjct: 1 MYYITHASVKMANKRYSRNQHDMEVVLRPDSEVTKCTDRPQILSPKVNFEFVRIHNLQSF 60
Query: 349 --------------------ENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMS 388
NN D++G V +I L K G + QKR + + D S
Sbjct: 61 IDTEIESFGACEGFLMNKERLNNITEDVLGTVIHIGEMKQLKSKTGEDLQKREIQIVDDS 120
Query: 389 GRSVELTLWGNFCNDDGLRLQHMCDSGVFP------ILAVKAGRVSDFNGKV-VGTISTT 441
G V + LWG + +FP +LAVK V F G + + ++++T
Sbjct: 121 GYYVTVNLWGQ-------------KAKIFPSEQYQHVLAVKGLLVRCFQGTISLVSMTST 167
Query: 442 QLFIEPDFPEAHRLKEWFEK-EGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEK 500
+L +P FPEA L+ W+ K + K +S S+++ V + + Q+K G
Sbjct: 168 KLLHDPHFPEADALQFWYSKNKDKAFKSASVNQ----VSSFKEHRWIKQLKFSVDG---- 219
Query: 501 PDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWH-CDRCDQSVVECDYR 559
+ ++A I I +N Y C C KK++ DG + C +C E Y
Sbjct: 220 -HFFNLTAMISSIFIENAVYKGCL------TCKKKLLVEKDGDLYICSKCG-ICNEYKYY 271
Query: 560 YILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYL 619
Y L ++ D TG VTAF +CA++++G A ++ L D++ ++ ++ F Y+
Sbjct: 272 YTLHMELFDFTGTVHVTAFDDCAQKLIGEQADEVAKLLIFDRD--RYQSSFKSVLFKPYM 329
Query: 620 FKL 622
F+L
Sbjct: 330 FRL 332
>gi|302825524|ref|XP_002994373.1| hypothetical protein SELMODRAFT_4831 [Selaginella moellendorffii]
gi|300137728|gb|EFJ04565.1| hypothetical protein SELMODRAFT_4831 [Selaginella moellendorffii]
Length = 224
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 3/226 (1%)
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
+PI +N + +W+++ARVT KG+L + G V D+ D++ EIR+ F A
Sbjct: 1 MPIKDINDHCYRWSLRARVTHKGKLVFFETGTA-GCVMSVDVADAESSEIRIVGFGENAK 59
Query: 280 QFYHQVEAGKIYLVSRGS-LKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
+ ++E G +Y+ S S ++ ++ + ++ EI T ++ EDD IP
Sbjct: 60 RLSSEIEQGSVYIFSGNSGVQRSKPAYTPYKSNWEIKASKTMEIKRV-EDDLRIPNVFLK 118
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
+ D + + VD+IG V +I T + +G ++R L L D S S+++ LW
Sbjct: 119 RTSVLDASKLSQETFVDVIGGVMWIGQTNISPKDSGAFMRRRMLCLSDESSHSIDMCLWD 178
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLF 444
+ D+G ++ G PI+ VK GR+SD+NGK + + L
Sbjct: 179 SKAEDEGSEIEDKLGRGERPIVCVKGGRISDYNGKSISVTGGSTLL 224
>gi|66804925|ref|XP_636195.1| hypothetical protein DDB_G0289513 [Dictyostelium discoideum AX4]
gi|60464550|gb|EAL62688.1| hypothetical protein DDB_G0289513 [Dictyostelium discoideum AX4]
Length = 679
Score = 106 bits (264), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 115/225 (51%), Gaps = 17/225 (7%)
Query: 219 IIPIAALNPYMG-KWTIKARVTAKGELRHYNN-QRGDGKVFHFDLLDSDGGEIRVTCF-- 274
I I ++ P M ++TI+A V K L+ +N G+GK+F +L+DS GEI+ CF
Sbjct: 211 ITDIESIAPGMNVQFTIRAMVRNKQPLKSWNKGANGEGKLFSMELVDS-TGEIKCACFSD 269
Query: 275 ----NAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDA 330
N + Y E GK+Y + R +K A K +N L + E+ ++ S V + +
Sbjct: 270 SSNPNNFINALYDCFENGKVYFIQRFFVKSANKLYNTLSHQSELSINSESRVMISPDQTQ 329
Query: 331 SIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGR 390
P ++F+ I D+E +E N VD+IG ++ I P A+L K G E K + + D +
Sbjct: 330 FTP--HYNFKKIADIENLEKNDTVDVIGAITNIDPIANLTSKQGKEFTKFGITIADDTNA 387
Query: 391 SVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVV 435
S+ + W N+ + G I+A+K +VSDF+G+ +
Sbjct: 388 SINVVFW----NEKATEVAPQVKVG--DIIAMKGVKVSDFSGRTL 426
>gi|145545796|ref|XP_001458582.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124426402|emb|CAK91185.1| unnamed protein product [Paramecium tetraurelia]
Length = 730
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 106/433 (24%), Positives = 191/433 (44%), Gaps = 44/433 (10%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQ-RGDGKVFHFDLLDSDGGEIRVTCFNAV 277
P+ +NP + + RV E++ Y + + DGK+F ++D + + F++
Sbjct: 305 FFPLYQINPSF-QQPFRGRVVKVNEIKSYTTKNQKDGKMFGIQVIDEENL-VSAMFFDSA 362
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHN----DLEIFLDMTSMVQLCYEDDASIP 333
A++F+ + G+ Y+ S +KPA KN L + D S + + +D IP
Sbjct: 363 AEKFHDYIVQGRCYIFSGVLVKPA-KNLEQLQKIGCLPFDYTFDQNSQI-IEIDDVPGIP 420
Query: 334 RQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRT-LHLRDMSGRSV 392
F+F +N + + S+ D++ V+ S +KN E R L + D S + +
Sbjct: 421 LNTFNFVKLNSISQQKVGSIQDVVVVIKSSSGVKEFQQKNKDEKSTRIQLGVYDDSLQEI 480
Query: 393 ELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNG-KVVGTISTTQLFIEPDFPE 451
E+TL+G+ L Q+ G I K+ +++++ G K + T + + + E
Sbjct: 481 EITLYGH------LAQQYPYQVG--EIYMFKSLKINEYQGRKSLQNNYQTSIHFDKNQKE 532
Query: 452 AHRLKEWFEK-EGKNTQSVS----ISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITV 506
L+ W + +GK + VS IS + ++ + + D + + +
Sbjct: 533 VKELQNWLQNFDGKLAEPVSKIKLISELINESNKCELDQNLKIYSD----VRAQLVLVKN 588
Query: 507 SATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQI 566
S T+ Y C N C KKV D + C C+ ++ E YRYIL +I
Sbjct: 589 SGTLYYQSCTN--------------CLKKVTTELDS-YFCSSCNLTLKEPKYRYILNCKI 633
Query: 567 QDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKE 626
D +G WV+ + A +++ + A L L + EK E + + + ++ FKL K
Sbjct: 634 ADSSGNIWVSVGDQQANQLIDIPANLLKQLTDEGKEKEK-NEALSKSAYKEFRFKLTSKL 692
Query: 627 ETFSDEQRVKSTV 639
E F+D +RVK V
Sbjct: 693 EEFNDVKRVKHAV 705
>gi|88191850|pdb|1YNX|A Chain A, Solution Structure Of Dna Binding Domain A (Dbd-A) Of
S.Cerevisiae Replication Protein A (Rpa)
Length = 114
Score = 104 bits (260), Expect = 2e-19, Method: Composition-based stats.
Identities = 48/110 (43%), Positives = 75/110 (68%), Gaps = 1/110 (0%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I I L+PY WTIKARV+ KGE++ ++NQRGDGK+F+ + LD+ GEIR T FN A
Sbjct: 4 IFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTS-GEIRATAFNDFA 62
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYED 328
+F ++ GK+Y VS+ L+PA+ F +L + E+ LD ++++ C+++
Sbjct: 63 TKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECFDE 112
>gi|399217121|emb|CCF73808.1| unnamed protein product [Babesia microti strain RI]
Length = 455
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 112/452 (24%), Positives = 199/452 (44%), Gaps = 37/452 (8%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQF 281
I + Y W I ARV K L N + + K+F+ D++D G IR + AD+
Sbjct: 7 IRDITTYTTNWIIIARVVEKSPL---NTLKNNNKLFYIDIVDKLGDTIRAKFWGNAADKH 63
Query: 282 YHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRP 341
+ +E GK+Y S+G + + + FN N E+ + S + +D +++F+F
Sbjct: 64 FPLLELGKVYSFSQGRVSVSNRKFNTNPNMYELTFEANSPISPIEDDGLINTKRRFNFIS 123
Query: 342 INDVEGM--ENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGN 399
I D++ E V D++ +V+ ++ L K+G ETQKR++ + D S +E++ W +
Sbjct: 124 IRDIKNTSKELPFVCDILCIVNTVAQPQILNMKSGDETQKRSIFVVDDSNYQMEVSFWSD 183
Query: 400 FCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWF 459
N D + S V + +K + G+ T D + H L++W+
Sbjct: 184 KANLDIFN-DCIGKSVVLSQIKIKDWQNVRSGYSWSGSSITYACDENVDKSQLHSLEKWY 242
Query: 460 -EKEGKNTQSVSISRDSLSVGRADIRKTVSQI--KDEGLGTKE------KPDWITVSATI 510
E KN +S+ + S + RK +S I +E G+ E + W I
Sbjct: 243 HEAISKNHDFISMKSNGQSHVYSIERKDLSSISMNNEVGGSYEFVAHLKRIYWKNRDGEI 302
Query: 511 VYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHT 570
I Y +C C KKV + + ++ C CD S+VE ++RY D++
Sbjct: 303 TLI------YPSC------NKCKKKVHMDENEKFVCPSCD-SIVEPEFRYRFTAIFADYS 349
Query: 571 GLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKV--KEET 628
G + F + + ++ + A L SL + + + + + + LF++ V K T
Sbjct: 350 GHLPIHFF-DIGQSLINVQADKLKSLDH-----DSLKQFLDHDILYQ-LFRVSVYAKVST 402
Query: 629 FSDEQRVKSTVVKAERYNYSSETRFILDLMDK 660
F+ E + K E NY E ++ D++ K
Sbjct: 403 FNGEVKTVYRATKVEPVNYEEEIAYMTDVLKK 434
>gi|357484637|ref|XP_003612606.1| Replication protein A1-like protein [Medicago truncatula]
gi|355513941|gb|AES95564.1| Replication protein A1-like protein [Medicago truncatula]
Length = 708
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 76/117 (64%), Gaps = 4/117 (3%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQ +DLK V Q QQ + +++ LSDG + GMLA Q+NELV +G LQ GS+V
Sbjct: 389 PVLQFIDLKPV----QSQQNSAIEIYQLFLSDGLHYEHGMLAKQKNELVHNGRLQKGSIV 444
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNA 118
+LT+F ++ R ++IV+DL+VI+DKCD IGKP PA + + S GN QS A
Sbjct: 445 KLTQFIYKHVRTRKLLIVVDLEVIMDKCDLIGKPDPAPKEAPALSAASHAGNVQSAA 501
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 70/98 (71%), Gaps = 5/98 (5%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQV+DLKL+ Q QQ + +++VLSDGS +QG L+ Q+N+L+ SG LQ GS+V
Sbjct: 534 PVLQVIDLKLL----QSQQNSTTKMYQLVLSDGSHYKQGTLSVQKNKLIHSGRLQKGSIV 589
Query: 62 RLTKFTCN-VIQNRMIVIVMDLDVIIDKCDPIGKPVPA 98
+L + CN V QN I+ ++LDVI+DK D IGKPVPA
Sbjct: 590 KLNEIICNDVNQNLKIIFFVELDVILDKWDLIGKPVPA 627
>gi|442751523|gb|JAA67921.1| Hypothetical protein [Ixodes ricinus]
Length = 151
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 92/159 (57%), Gaps = 15/159 (9%)
Query: 386 DMSGRSVELTLWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLF 444
+MSG+ V TLWG + DG R P++A+K RVSDF G+ + +S++ +
Sbjct: 2 NMSGKVVSATLWGEDADKFDGSRQ---------PVMAIKGARVSDFGGRSLSVLSSSTVI 52
Query: 445 IEPDFPEAHRLKEWFEKEGKNTQSVSISR-DSLSVGRADIRKTVSQIKDEGLGTKEKPDW 503
+ PD PEA++L+ WF+ EG+ SIS S G A KT+ ++K E LG +K D+
Sbjct: 53 VNPDIPEAYKLRGWFDSEGQALDGASISDLRSGGTGSATNWKTLYEVKSENLGQGDKADY 112
Query: 504 ITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDG 542
+ AT+VY++ +N Y ACP + CNKKV++ +G
Sbjct: 113 FSCVATVVYLRKENSMYQACPT----QDCNKKVIDQQNG 147
>gi|300120593|emb|CBK20147.2| unnamed protein product [Blastocystis hominis]
Length = 182
Score = 102 bits (254), Expect = 9e-19, Method: Composition-based stats.
Identities = 61/181 (33%), Positives = 99/181 (54%), Gaps = 6/181 (3%)
Query: 484 RKTVSQIKDEGLGTKEKPDWITVSATIVYIKCD-NFCYTACPIMIGD-RPCNKKVMNNGD 541
RKT+S I+DE LG KEKPD++TV + I D + Y ACP + D R C KK++ D
Sbjct: 4 RKTLSAIQDEQLGFKEKPDYLTVKVMVRSIPHDRSVVYPACPNVKEDGRKCQKKLIQGVD 63
Query: 542 GRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQ 601
G W C+ C++ V +YRYI ++ D++G +V F + E + A + L+
Sbjct: 64 G-WSCESCNRVVEAPEYRYIFNMEVMDYSGSQYVQLFNDEGERFFEIPAGRMNELE--KS 120
Query: 602 NDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
N E++ +V +N F +Y+ L+VK + S RV+ TV + + + E + L+D +
Sbjct: 121 NSEEYEKVFKNRLFKEYIMTLRVKVDQ-SMTSRVRCTVYRFDPVDVDKEVDDLASLLDSM 179
Query: 662 K 662
+
Sbjct: 180 Q 180
>gi|403331791|gb|EJY64864.1| hypothetical protein OXYTRI_14991 [Oxytricha trifallax]
Length = 593
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 120/491 (24%), Positives = 200/491 (40%), Gaps = 75/491 (15%)
Query: 220 IPIAALNPYMGK-WTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
IPI LN G+ W IK RVT KG+ Y G + +L+D +G +I T +
Sbjct: 108 IPIKDLNTASGEDWFIKGRVTKKGKKIVY----ATGFMLKIELIDKEGTQIEGTFYKDSC 163
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQ--LCYEDDAS----- 331
D+F ++E GKIY++ +G + A K F + ND I S VQ + +D+
Sbjct: 164 DKFIDKIEEGKIYVIGKGQIANANKKFTSIQNDYRIIFTEHSHVQEYVSMKDEVESKQSH 223
Query: 332 ----IPRQQFHFRPINDVEG-MENNSVVDLIGVVSYISPTASLMR------KNGTETQKR 380
R +F+F I+DV + N +D+IG+ P + KN + +
Sbjct: 224 QSEHFQRFKFNFLKISDVLSCIHNLKQIDVIGINISKDPKRDDIEVKFDYGKNNVKG-RL 282
Query: 381 TLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTIST 440
L + D S S+ +TLWG N + + G I+ + GR+S++ GK + S
Sbjct: 283 ILEIVDNSNESINVTLWGELSNLE-------FNEG--DIVIINGGRISNYGGKSINCGSE 333
Query: 441 -TQLFIEPDFPEAHRLKEWFE----------KEGKNTQSVSISRDSLSVGRADIRKTVSQ 489
++ I P L+ + K+ +Q ++ + +S R + + +
Sbjct: 334 HCKIIINPSREVVSDLENYINVDKINLVAKTKQQIQSQEQAVRAEGMSKLRDESQTFIVN 393
Query: 490 IKD-----------EGLGTKEKPDWITV---SATIVYIKCDNFCYTACPIMIGDRPCNKK 535
+ + EG T P I + T D+ Y CPI C KK
Sbjct: 394 LLEELNCSFEGTFNEGCETFLNPQGIFCLQGNITKFVQPSDSIAYLGCPI------CFKK 447
Query: 536 VMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYS 595
V +N ++C C + + E + Y + QD TG + +E AE++M Y
Sbjct: 448 VTDNRLTGFYCTNCLKIIKE-KHHYFIHAIFQDFTGKVLIGFSREQAEQLMNNIDASTYM 506
Query: 596 LKY---VDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVV-------KAERY 645
K Q + G + N F + +K K E F R++ + +E+
Sbjct: 507 TKIRKTFRQECDFEGWLNENVYFKTFKILVKAKSEQFKGVNRLRFYALDIDYISKDSEKA 566
Query: 646 NYSSETRFILD 656
N+ E R +L+
Sbjct: 567 NFRDENRLLLN 577
>gi|237831865|ref|XP_002365230.1| hypothetical protein TGME49_060570 [Toxoplasma gondii ME49]
gi|211962894|gb|EEA98089.1| hypothetical protein TGME49_060570 [Toxoplasma gondii ME49]
Length = 410
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 116/208 (55%), Gaps = 16/208 (7%)
Query: 267 GEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEI-FLDMTSMVQLC 325
GEIR + F VA ++ ++E G++Y SRG++ A K +N L ++ EI F D +V++
Sbjct: 52 GEIRASFFGRVAATWHPRLEVGRVYQFSRGTIDTANKKYNSLSHEYEIKFDDRAVIVEM- 110
Query: 326 YEDDASIPRQQFHFRPINDVEGMENN---SVVDLIGVVSYISPTASLMRKNGT-ETQKRT 381
+DD SIP Q F P+ +++ SVVD+IG V+ T S++ +N E +++
Sbjct: 111 -DDDPSIPAQIFS--PLKLATLTDDSLVGSVVDVIGFVTSFCETHSVLARNTKDEVRRKE 167
Query: 382 LHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKV-VGTIST 440
L + D SG +V +TLW L+ + + P+LA+KA RVS++ GKV + + S
Sbjct: 168 LSIVDDSGAAVTVTLWEQHAT--ALKDSVLAER---PLLAIKAVRVSEYAGKVSLTSTSR 222
Query: 441 TQLFIEPD-FPEAHRLKEWFEKEGKNTQ 467
+ + ++P EA L W+E EG+
Sbjct: 223 SVILVDPHGLEEADLLAAWWEAEGEKAH 250
>gi|388505094|gb|AFK40613.1| unknown [Medicago truncatula]
Length = 341
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 76/117 (64%), Gaps = 4/117 (3%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQ +DLK V Q QQ + +++ LSDG + GMLA Q+NELV +G LQ GS+V
Sbjct: 22 PVLQFIDLKPV----QSQQNSAIEIYQLFLSDGLHYEHGMLAKQKNELVHNGRLQKGSIV 77
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNA 118
+LT+F ++ R ++IV+DL+VI+DKCD IGKP PA + + S GN QS A
Sbjct: 78 KLTQFIYKHVRTRKLLIVVDLEVIMDKCDLIGKPDPAPKEAPALSAASHAGNVQSAA 134
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 70/98 (71%), Gaps = 5/98 (5%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQV+DLKL+ Q QQ + +++VLSDGS +QG L+ Q+N+L+ SG LQ GS+V
Sbjct: 167 PVLQVIDLKLL----QSQQNSTTKMYQLVLSDGSHYKQGTLSVQKNKLIHSGRLQKGSIV 222
Query: 62 RLTKFTCN-VIQNRMIVIVMDLDVIIDKCDPIGKPVPA 98
+L + CN V QN I+ ++LDVI+DK D IGKPVPA
Sbjct: 223 KLNEIICNDVNQNLKIIFFVELDVILDKWDLIGKPVPA 260
>gi|221506608|gb|EEE32225.1| replication factor, putative [Toxoplasma gondii VEG]
Length = 410
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 116/208 (55%), Gaps = 16/208 (7%)
Query: 267 GEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEI-FLDMTSMVQLC 325
GEIR + F VA ++ ++E G++Y SRG++ A K +N L ++ EI F D +V++
Sbjct: 52 GEIRASFFGRVAATWHPRLEVGRVYQFSRGTIDTANKKYNSLSHEYEIKFDDRAVIVEM- 110
Query: 326 YEDDASIPRQQFHFRPINDVEGMENN---SVVDLIGVVSYISPTASLMRKNGT-ETQKRT 381
+DD SIP Q F P+ +++ SVVD+IG V+ T S++ +N E +++
Sbjct: 111 -DDDPSIPAQIFS--PLKLATLTDDSLVGSVVDVIGFVTSFCETHSVLARNTKDEVRRKE 167
Query: 382 LHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKV-VGTIST 440
L + D SG +V +TLW L+ + + P+LA+KA RVS++ GKV + + S
Sbjct: 168 LSIVDDSGAAVTVTLWEQHAT--ALKDSVLAER---PLLAIKAVRVSEYAGKVSLTSTSR 222
Query: 441 TQLFIEPD-FPEAHRLKEWFEKEGKNTQ 467
+ + ++P EA L W+E EG+
Sbjct: 223 SVILVDPHGLEEADLLAAWWEAEGEKAH 250
>gi|440803406|gb|ELR24309.1| replication protein A1, putative, partial [Acanthamoeba castellanii
str. Neff]
Length = 1326
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 120/249 (48%), Gaps = 25/249 (10%)
Query: 219 IIPIAALNPYMGKWTIKARVT-AKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAV 277
+ P++ALNP+ WTI+ RV EL + +G+ F DL+D +G IR +NAV
Sbjct: 996 LTPVSALNPFSVAWTIEVRVVYLPTELFKWQKNGKEGRHFCCDLMDKNGDCIRAVAYNAV 1055
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDD--ASIPRQ 335
AD + +++ +IY +S G K A K ++ L +D ++ T+++ + A+ P Q
Sbjct: 1056 ADDIFPRLKENQIYRISGGHFKVANKKYSKLSHDYDLTFATTTLIIPITDPTRIAAFPTQ 1115
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVEL 394
Q F P++ + E++ V + P S+ R G KR++ L D + VEL
Sbjct: 1116 QPDFLPLSQLASREHDEVA--------VGPLGSITARTTGNVIPKRSVFLEDQTRSIVEL 1167
Query: 395 TLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTT----QLFIEPD-F 449
TLW DD + +G +LAV V+ F G T+ST +L + F
Sbjct: 1168 TLW----YDDAKNAATLFKNG--DVLAVTGAWVNRFRGHT--TLSTKHASYKLHVNSSAF 1219
Query: 450 PEAHRLKEW 458
P+ L +W
Sbjct: 1220 PQTAALVQW 1228
>gi|389582888|dbj|GAB65624.1| replication factor A-related protein [Plasmodium cynomolgi strain
B]
Length = 485
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 113/489 (23%), Positives = 209/489 (42%), Gaps = 68/489 (13%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
+ I+ + Y+ KW IKA+V K +L + N + F D+ D G I + + A
Sbjct: 7 LFRISQITTYVSKWIIKAKVVNKSKLSTFKN---NNSFFSIDVTDVHGDSISCKFWGSAA 63
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ-- 336
D++++ +E K+Y+ S+G + A +N + + E+ + S + +DD I Q+
Sbjct: 64 DKWFNNIELKKVYIFSKGRVSIANPKYNTVKHKYELTFNEDSEIHEV-KDDGEIKIQKKI 122
Query: 337 --FHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVEL 394
+ R I + E DLIG+V +I ++L K G + K+ + + D + S E+
Sbjct: 123 SLVNLRDIK-IATKETPFTADLIGIVKHIGTISNLKTKQGNDITKQNIIIVDDTKHSFEI 181
Query: 395 TLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDF-NGK--VVGTISTTQLFIEPDFPE 451
W + N L + ++ ++ + +D NG V +I + E +
Sbjct: 182 AFWDSNVN---LIKDEIKENEIYVFTNISIRNWNDMKNGTFGVTSSIEKIENLNEELKAK 238
Query: 452 AHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWIT-VSATI 510
+ EW+ GK Q ++ R+ LS VSQI D+ + D + +S T
Sbjct: 239 CTMISEWYNTNGKYEQFTNM-RNILS-------NDVSQIPDKHYALSDVNDVLAKISGTY 290
Query: 511 --------VYIKCDN----FCYTACPIMIGDRPCNKKVMNNGDGR--------------- 543
+Y K F Y AC C KK++++G
Sbjct: 291 TLVGRIKRIYWKSKENEHRFYYPACT------KCKKKLLSSGQDNAPDNDYETNANDEES 344
Query: 544 --WHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQ 601
+ C CD++ V+ Y Y F D +G + AF + ++G A++L SL
Sbjct: 345 IVYSCMNCDENNVKPFYNYTFNFLFMDFSGSITLRAFSDEGYNLLGKKAEELKSL----- 399
Query: 602 NDEKFGEVVRNATF--TKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMD 659
DE + + N F +Y ++V ++ ++ +RV T ++ + S+ ++L+ +
Sbjct: 400 -DEDTLDYLFNYDFLYKEYKVVVRVNQKVYNGIERVNFTAMRIFPQKH-SDISYLLNEIQ 457
Query: 660 KLKSGDSTS 668
L S D+T+
Sbjct: 458 LLISKDNTA 466
>gi|147857506|emb|CAN80780.1| hypothetical protein VITISV_011466 [Vitis vinifera]
Length = 280
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/314 (24%), Positives = 140/314 (44%), Gaps = 56/314 (17%)
Query: 358 GVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVF 417
GVV +SPT + RK+ + +K +V ++LW + + G L D F
Sbjct: 15 GVVQSVSPTMRIRRKSHNDIKK-----------TVVVSLWNDHATNVGQELLDNADK--F 61
Query: 418 PILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLS 477
PI+A+K+ + K++ W++ E K SI D
Sbjct: 62 PIVAIKSLKXHANKKKLIS---------------------WYDSECKGASMASIGSDISP 100
Query: 478 VGRADIRK------TVSQIKDEGLGTKEKPDWITVSATIVYIKCD-NFCYTACPIMIGDR 530
+ +R ++S + ++KP + ++ A I +IK D Y AC +
Sbjct: 101 SSKGGVRSMYYDRVSLSHVTSNPSLGEDKPSFFSIRAYISFIKPDQTMWYRAC------K 154
Query: 531 PCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSA 590
CNKKV + + C+ C ++ EC RYI+ ++ D +G W++ F + AE I G SA
Sbjct: 155 TCNKKVTDAIGSEYWCEGCQKNDDECSLRYIMVVKVSDASGEAWLSLFNDQAERIFGCSA 214
Query: 591 KDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSE 650
+L LK + ++ A + LF++ V + + +E+R + T ++++E
Sbjct: 215 DELDKLK---------SQKLKEAIWVPQLFRISVAQHEYMNEKRQRITARAVVPVDFAAE 265
Query: 651 TRFILDLMDKLKSG 664
+R +L+ + K+K+
Sbjct: 266 SRLLLEEISKMKTS 279
>gi|312072189|ref|XP_003138952.1| BRCA2 repeat family protein [Loa loa]
Length = 502
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 152/345 (44%), Gaps = 58/345 (16%)
Query: 212 KSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRV 271
KS + PI L PY W + +VT+ E+R Q +F F +D G EIRV
Sbjct: 169 KSNKIGNVTPIKLLTPYCKNWRLCIKVTSVDEIRCIRGQH----IFSFLAVDDGGVEIRV 224
Query: 272 TCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDAS 331
+ F +A + + ++Y ++R S+K A + ++ +D+E+ L S V C +
Sbjct: 225 SAFGDIACRTATLICPEQMYYITRASVKMANRRYSRNEHDMEVVLRPDSEVTKCTDRPYI 284
Query: 332 I-PRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGR 390
+ P+ F F I++++ + + E QKR + + D SG
Sbjct: 285 LSPKVNFEFVRIHNLQNFIDTEI---------------------EELQKREIQVVDDSGY 323
Query: 391 SVELTLWGN----FCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKV-VGTISTTQLFI 445
V + LWG F N+ + QH +LAVK V F G + + ++++++L
Sbjct: 324 YVAINLWGQKAKMFPNE---QYQH--------VLAVKRLLVRCFQGTISLVSLASSKLLH 372
Query: 446 EPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWIT 505
+P FPEA L+ W+ + K+ + S+++ V K + Q+K G +
Sbjct: 373 DPHFPEADALRFWYSENRKSFKPASMNQ----VSSFHEHKWIKQLKPSLDG-----HFFN 423
Query: 506 VSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWH-CDRC 549
++A I I +N Y CP C KK++ D + C +C
Sbjct: 424 LTAMISSIFTENAVYKGCP------TCKKKLLVEKDNDLYICSKC 462
>gi|221486920|gb|EEE25166.1| replication factor, putative [Toxoplasma gondii GT1]
Length = 410
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 115/207 (55%), Gaps = 14/207 (6%)
Query: 267 GEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCY 326
GEIR + F VA ++ ++E G++Y SRG++ A K +N L ++ EI D +++ +
Sbjct: 52 GEIRASFFGRVAATWHPRLEVGRVYQFSRGTIDTANKKYNSLSHEYEIKFDDRAVI-VET 110
Query: 327 EDDASIPRQQFHFRPINDVEGMENN---SVVDLIGVVSYISPTASLMRKNGT-ETQKRTL 382
+DD SIP Q F P+ +++ SVVD+IG V+ T S++ +N E +++ L
Sbjct: 111 DDDPSIPAQIFS--PLKLATLTDDSLVGSVVDVIGFVTSFCETHSVLARNTKDEVRRKEL 168
Query: 383 HLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKV-VGTISTT 441
+ D SG +V +TLW L+ + + P+LA+KA RVS++ GKV + + S +
Sbjct: 169 SIVDDSGAAVTVTLWEQHAT--ALKDSVLAER---PLLAIKAVRVSEYAGKVSLTSTSRS 223
Query: 442 QLFIEPD-FPEAHRLKEWFEKEGKNTQ 467
+ ++P EA L W+E EG+
Sbjct: 224 VILVDPHGLEEADLLAAWWEAEGEKAH 250
>gi|449282115|gb|EMC89022.1| Replication protein A 70 kDa DNA-binding subunit [Columba livia]
Length = 196
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 87/158 (55%), Gaps = 3/158 (1%)
Query: 230 GKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGK 289
KW I A VT KG++ ++N RG+GK+F +L++ + EIR T F+ AD+F+ E K
Sbjct: 28 SKWAICACVTQKGQICTWSNSRGEGKLFSKELVN-ESSEIRATAFSDHADKFFPLTELDK 86
Query: 290 IYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGME 349
+Y S+G+LK A K + + ND E + V C D +P QF F I+D E
Sbjct: 87 VYYFSKGTLKSANKQYTAVKNDYETTFTSETSVVPC-NDAQHLPSVQFDFVSISDFENTP 145
Query: 350 NNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRD 386
+S+V++ GV SY +M+ N + KR +HL D
Sbjct: 146 EDSIVNVSGVCKSYEDVIKIIMKVNNRDVSKRNVHLMD 183
>gi|300120592|emb|CBK20146.2| unnamed protein product [Blastocystis hominis]
Length = 362
Score = 99.8 bits (247), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 64/96 (66%), Gaps = 1/96 (1%)
Query: 220 IPIAALNPYMGK-WTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
IPI+A++PY+ W I+ RVT K +R +NN RG+GK+F DLLD D GEIRVT F +
Sbjct: 230 IPISAIHPYLTNGWFIRCRVTNKSSIRTFNNARGEGKLFSVDLLDKDSGEIRVTFFTEMV 289
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEI 314
D FY+ +E GK+Y + A+K FN L+N+ E+
Sbjct: 290 DTFYNYLEVGKVYDFCNFKIGFARKQFNTLNNEYEL 325
>gi|194904084|ref|XP_001980998.1| GG17468 [Drosophila erecta]
gi|190652701|gb|EDV49956.1| GG17468 [Drosophila erecta]
Length = 228
Score = 99.8 bits (247), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 117/244 (47%), Gaps = 18/244 (7%)
Query: 221 PIAALNPYMGKWT-IKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
PI +L P + T IKARVT K E+ +NN DG +F +LLD + GEI FN + +
Sbjct: 1 PICSLLPTLCNMTSIKARVTWKSEITQWNNAGKDGIIFIMNLLD-ESGEITGVVFNNLIN 59
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
FY Q++ G +Y+ SR ++ A+ F N +FL ++V+L + IPR+ ++F
Sbjct: 60 AFYGQIQTGLVYIFSRFQVQQAENCFKVSKNPFAVFLLWNTVVELSASE--RIPRETYNF 117
Query: 340 RPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGN 399
P+++V + VD IG+ + + L + G R + L D + V L LW
Sbjct: 118 LPLSEVSTKPDKEPVDAIGICTEVR---DLDHRGGHSI--REILLVDPDYQPVMLNLW-- 170
Query: 400 FCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTIST-TQLFIEPDFPEAHRLKEW 458
+ + D ++ VK R N + S T + I PD P+A + EW
Sbjct: 171 --EKEAENFEGRPDD----VIVVKGARAQPHNNAIKLNASWYTNVQINPDIPDATSMLEW 224
Query: 459 FEKE 462
+ +
Sbjct: 225 YRNQ 228
>gi|156097108|ref|XP_001614587.1| replication factor A-related protein [Plasmodium vivax Sal-1]
gi|148803461|gb|EDL44860.1| replication factor A-related protein, putative [Plasmodium vivax]
Length = 485
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 112/489 (22%), Positives = 208/489 (42%), Gaps = 68/489 (13%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
+ I+ + Y+ KW IKA+V K +L + N + F D+ D G I + + A
Sbjct: 7 LFRISQITTYVSKWIIKAKVVNKSKLSTFKN---NNSFFSIDVTDVHGDSISCKFWGSAA 63
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ-- 336
D++++ +E K+Y+ S+G + A +N + + E+ + S + +DD I Q+
Sbjct: 64 DKWFNNIELKKVYIFSKGRVSIANPKYNTVKHKYELTFNEDSEIHEV-KDDGEIKIQKKI 122
Query: 337 --FHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVEL 394
+ R I + E DLIG+V +I ++L K G + K+ + + D + S E+
Sbjct: 123 SLVNLRDIK-IATKETPFTADLIGIVKHIGTISNLKTKQGNDITKQNIIIVDDTKHSFEI 181
Query: 395 TLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDF-NGK--VVGTISTTQLFIEPDFPE 451
W + N L + ++ ++ + +D NG V +I + E +
Sbjct: 182 AFWDSNVN---LIRDEIKENEIYIFTNISIRNWNDMKNGTFGVTSSIEKIENLNEELKAK 238
Query: 452 AHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWIT-VSATI 510
+ EW+ GK Q ++ R+ LS VSQI D+ + D + +S T
Sbjct: 239 CTMISEWYNTNGKYEQFTNM-RNILS-------NDVSQIPDKHYALSDVNDVLAKISGTY 290
Query: 511 --------VYIKCDN----FCYTACPIMIGDRPCNKKVMNNGDGR--------------- 543
+Y K F Y AC C KK++++G
Sbjct: 291 TLVGRIKRIYWKSKENEHRFYYPACT------KCKKKLLSSGQDNATDNDYETNANDEES 344
Query: 544 --WHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQ 601
+ C CD++ V+ Y Y F D +G + AF + ++G A++L L
Sbjct: 345 IVYSCMNCDENNVKPFYNYTFNFLFMDFSGSITLRAFSDEGYNLLGKKAEELKGL----- 399
Query: 602 NDEKFGEVVRNATF--TKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMD 659
DE + + N F +Y ++V ++ ++ +RV T ++ + S+ ++L+ +
Sbjct: 400 -DEDTLDYLFNYDFLYKEYKVVVRVNQKVYNGIERVNFTAMRIFPQKH-SDISYLLNEIQ 457
Query: 660 KLKSGDSTS 668
L S D+T+
Sbjct: 458 LLISKDNTA 466
>gi|429327570|gb|AFZ79330.1| hypothetical protein BEWA_021780 [Babesia equi]
Length = 467
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 105/457 (22%), Positives = 192/457 (42%), Gaps = 44/457 (9%)
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
IPI + Y WTI AR+ K L+ + D D+ D +G IR + A
Sbjct: 6 IPIKNITTYTSNWTILARIIDKSPLKSI---KSDNSFMSIDIKDKNGDTIRGKFWGVAAT 62
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ-FH 338
++ ++ G +Y S+GS+ A K FN+ ++ E+ ++ S ++ +D I ++ ++
Sbjct: 63 KWDDILQKGNVYTFSKGSVNLANKKFNNTPHNYELTFNIDSQIEQA-DDIGDIDNERNYN 121
Query: 339 FRPINDVEGMENNS--VVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTL 396
F + +++ S +VD++ ISP + K E ++RTLH+ D SG +E+TL
Sbjct: 122 FVTLREIKSTARESPFMVDILCFAKSISPISMTSTKFSKEMKRRTLHIVDDSGYELEITL 181
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVG--------TISTTQLFIEPD 448
WG + D + L V + ++NG G I+ Q + D
Sbjct: 182 WGQMAE------LELLDDILDKPLIVSQITIKEWNGGRYGQSSLASDIKIANQQNVRDKD 235
Query: 449 FPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSA 508
+ L+ W+ + + + S+ ++T E + +K K + T +
Sbjct: 236 --KLSNLETWYHQALSQNEIFKSLKSQSSISN---KETYEFSNIEKINSKTKGGY-TFNC 289
Query: 509 TIVYIKCDN------FCYTACPIMIGDRPCNKKVMNNGDGR-WHCDRCDQSVVECDYRYI 561
+ I N Y +CP+ C KKV+ + D + C CD +VV R++
Sbjct: 290 KLRRIFWKNKDGTTRLWYQSCPM------CFKKVIIDEDSNIYRCIACDDAVVTPVLRFL 343
Query: 562 LQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFK 621
D++G + E +++GM+ + L +L D+ + AT +
Sbjct: 344 FTCLFIDYSGQIICNIYGENGTKLIGMTEQQLDAL----DKDKLKNALDFVATHKDFKIS 399
Query: 622 LKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLM 658
K +T++ E + V E N+ E +LD M
Sbjct: 400 GFYKSKTYNGEVKNTFNVTNIELVNHIDEANMLLDKM 436
>gi|302825877|ref|XP_002994510.1| hypothetical protein SELMODRAFT_432429 [Selaginella moellendorffii]
gi|300137509|gb|EFJ04425.1| hypothetical protein SELMODRAFT_432429 [Selaginella moellendorffii]
Length = 373
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 104/226 (46%), Gaps = 11/226 (4%)
Query: 403 DDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKE 462
+D LR+ ++ V +K GR+SD+NGK + + L ++P+ + L EW
Sbjct: 138 EDDLRIPNV----VLKRPKMKGGRISDYNGKSISVTGGSTLLVDPELEDVSWLHEWMVAS 193
Query: 463 GKNTQSVSISRDSLSVGRADI--RKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCY 520
T V ++ S +A I KTVS++ L E V ++ I+ +F Y
Sbjct: 194 YDTTNFVHVTNSS---SKAVIYGTKTVSEMLSINLKVSEFSAIFRVIVSVKEIQTGDFYY 250
Query: 521 TACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQE 580
AC ++ R C+KKV + W C+ CD + +Y L I D TG W AF +
Sbjct: 251 PACMKVVNGRQCSKKVTQVSESMWQCNSCDSDSGDIQLKYALHLCILDSTGHIWAVAFDD 310
Query: 581 CAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKE 626
A EI+GM A L +L+ D + F ++ + Y KL K+
Sbjct: 311 AANEIVGMPACKLAALQ--DDDYTSFSAIMDSIRSKMYNLKLNRKK 354
Score = 46.2 bits (108), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
+PI +N + +W+++ARVT KG+L + G V D+ D++ +I + F A
Sbjct: 32 MPIKDINDHCYRWSLRARVTHKGKLVFFETGTV-GCVMSVDVADAESSKICIVGFGENAK 90
Query: 280 QFYHQVEAGKIYLVSRGS-LKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIP 333
+ ++E G +Y+ S S ++ ++ + ++ EI T ++ EDD IP
Sbjct: 91 RLSSEIEQGSVYIFSGYSGVQHSKPAYTPYKSNWEIKASKTMEIKRV-EDDLRIP 144
>gi|124506649|ref|XP_001351922.1| replication factor A-related protein, putative [Plasmodium
falciparum 3D7]
gi|23504949|emb|CAD51733.1| replication factor A-related protein, putative [Plasmodium
falciparum 3D7]
Length = 484
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 105/460 (22%), Positives = 198/460 (43%), Gaps = 65/460 (14%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
+ I+ + Y+ KW IKA+V K +L + N + F D+ D G I + + A
Sbjct: 7 LFRISQITTYVSKWIIKAKVVNKTKLSTFKN---NNSFFSIDVTDVHGDSISCKFWGSSA 63
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ-- 336
D++++ +E K+Y+ S+G + A +N + + E+ + S + +DD I Q+
Sbjct: 64 DKWFNVIELKKVYIFSKGRVSIANPKYNTVKHKYELTFNEDSEIHEV-KDDGEIKIQKKI 122
Query: 337 --FHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVEL 394
+ R I + E DLIG+V +I ++L K G + K+ + + D + S E+
Sbjct: 123 SLVNLRDIK-IATKETPFTADLIGIVKHIGTVSNLKTKQGNDIAKQNIIIVDDTKHSFEI 181
Query: 395 TLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDF-NGK--VVGTISTTQLFIEPDFPE 451
+ W + N L + + ++ ++ + +D NG V +I + + +
Sbjct: 182 SFWDSNVN---LIKEEIVENEIYIFTNINIRNWNDMKNGTFGVTSSIEKMENLNDELKAK 238
Query: 452 AHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWIT-VSATI 510
++ +W+ GK Q ++ R+ LS V+Q D+ + D ++ +S T
Sbjct: 239 CAKISQWYNNSGKYEQFTNM-RNILS-------NDVTQTPDKHYSISDVSDVLSKISGTY 290
Query: 511 --------VYIKCDN----FCYTACPIMIGDRPCNKKVM-----NNGDGR---------- 543
+Y K F Y AC C KK++ NN D
Sbjct: 291 TLIGRIKRIYWKSKENEHRFYYPAC------MKCKKKLLSSGHDNNMDNEFDNPEEDNIV 344
Query: 544 WHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQND 603
+ C CD++ V+ Y Y F D +G + AF + ++G A++L +L D
Sbjct: 345 YSCMNCDENNVKPFYNYTFNFLFMDFSGSIILRAFSDEGYNLLGKKAEELKNL------D 398
Query: 604 EKFGEVVRNATF--TKYLFKLKVKEETFSDEQRVKSTVVK 641
E + + N F +Y ++V ++ ++ +RV T +K
Sbjct: 399 EDTLDYLFNYDFLYKEYKIVVRVNQKAYNGIERVNFTAMK 438
>gi|238585702|ref|XP_002390945.1| hypothetical protein MPER_09698 [Moniliophthora perniciosa FA553]
gi|215454988|gb|EEB91875.1| hypothetical protein MPER_09698 [Moniliophthora perniciosa FA553]
Length = 175
Score = 96.7 bits (239), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 72/115 (62%), Gaps = 2/115 (1%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
+ PI LNPY WTIKARVT K +++ +NQ G GK F+ L+D + GEIR T FNAVA
Sbjct: 60 VDPIQTLNPYQNNWTIKARVTRKSDMKARSNQYGVGKSFYVTLMD-ESGEIRGTAFNAVA 118
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIP 333
D Y +++ GK Y +S+ + A + + +D E++L+ + ++ C D +++P
Sbjct: 119 DDLYGRLDEGKAYYISKAEVILASDKVSDVSSDYELWLERNTEIEECL-DTSNLP 172
>gi|302780169|ref|XP_002971859.1| hypothetical protein SELMODRAFT_412540 [Selaginella moellendorffii]
gi|300160158|gb|EFJ26776.1| hypothetical protein SELMODRAFT_412540 [Selaginella moellendorffii]
Length = 300
Score = 96.3 bits (238), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 137/292 (46%), Gaps = 43/292 (14%)
Query: 328 DDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDM 387
DD P+ + I +V ME ++ VD++GVV+ + T + +GT ++RTL L D
Sbjct: 8 DDVGFPKIVLDRKTILEVSEMEPDTFVDVVGVVTLVGLTNVTCKDSGTLIKRRTLCLGDE 67
Query: 388 SGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEP 447
SGRS+++ LW + ++G ++ + G L VK G++V ++
Sbjct: 68 SGRSIDVCLWDSKAEEEGSKIYEKFERGEKQFLCVK--------GEIVASV--------- 110
Query: 448 DFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVS 507
+ W+ +T + ++ S S A T+S++ L E D ++
Sbjct: 111 --------RAWYSVTLDSTSFIHVTGSSGS-NLAVRTTTISEMMGLNLKVMESSDTYRIT 161
Query: 508 ATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQ 567
A I I+ DNF Y AC ++ R C KKV + + E D++Y L I+
Sbjct: 162 ANIRDIRIDNFSYPACTRVVNGRQCGKKVSS------------AEIQEVDHKYALHVCIE 209
Query: 568 DHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFG---EVVRNATFT 616
D + W AFQE A E++G+ A+D S++ D+N + F + VR+ +T
Sbjct: 210 DSSQYVWAIAFQEAARELVGLPAQDFASMR--DENYDVFSAHLDAVRSKVYT 259
>gi|221054360|ref|XP_002258319.1| replication protein a large subunit [Plasmodium knowlesi strain H]
gi|193808388|emb|CAQ39091.1| replication protein a large subunit, putative [Plasmodium knowlesi
strain H]
Length = 493
Score = 95.5 bits (236), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 112/490 (22%), Positives = 205/490 (41%), Gaps = 68/490 (13%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
S + I+ + Y+ KW IKA+V K +L + N + F D+ D G I + +
Sbjct: 13 SLLFRISQITTYVSKWIIKAKVVNKTKLSTFKN---NNSFFSIDVTDVHGDSISCKFWGS 69
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
AD++++ +E K+Y+ S+G + A +N + + E+ + S + +DD I Q+
Sbjct: 70 SADKWFNNIEMKKVYIFSKGRVSIANPKYNTVKHKYELTFNEDSEIHEV-KDDGEIKIQK 128
Query: 337 ----FHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSV 392
+ R I + E DLIG+V +I ++L K G + K+ + + D + S
Sbjct: 129 KISLVNLRDIK-IATKETPFTADLIGIVKHIGTVSNLKTKQGNDIAKQNIIIVDDTKHSF 187
Query: 393 ELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDF-NGK--VVGTISTTQLFIEPDF 449
E+ W + N L + ++ ++ + +D NG V +I + E
Sbjct: 188 EIAFWDSNVN---LIKDEIKENEIYIFTNINIRNWNDMKNGTFGVTSSIEKIENLNEELK 244
Query: 450 PEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWIT-VSA 508
+ + EW+ GK Q ++ R+ LS VSQI ++ + D + +S
Sbjct: 245 AKCTMISEWYNTNGKYEQFTNM-RNILS-------NDVSQIPEKHYALSDVNDVLAKISG 296
Query: 509 TI--------VYIKCDN----FCYTACPIMIGDRPCNKKVMNNGDGR------------- 543
T +Y K F Y AC C KK++++G
Sbjct: 297 TYTLVGRVKRIYWKSKENEHRFYYPACS------KCKKKLLSSGQENVTDNDYETNANDE 350
Query: 544 ----WHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYV 599
+ C CD++ V+ Y Y F D +G + F + ++G A++L L
Sbjct: 351 EGIVYSCMNCDENNVKPYYNYTFNFLFMDFSGSMNIRVFSDEGYNLLGKKAEELKGL--- 407
Query: 600 DQNDEKFGEVVRNATF--TKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDL 657
DE + N F +Y ++V + ++ +RV T +K + S+ ++L+
Sbjct: 408 ---DEDNLNYLFNYDFLYKEYKVVVRVNQRLYNGIERVNFTAIKIFPQKH-SDISYLLNE 463
Query: 658 MDKLKSGDST 667
+ L S D+T
Sbjct: 464 IQLLISKDNT 473
>gi|294876282|ref|XP_002767631.1| replication protein A large subunit, putative [Perkinsus marinus
ATCC 50983]
gi|239869313|gb|EER00349.1| replication protein A large subunit, putative [Perkinsus marinus
ATCC 50983]
Length = 286
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 114/214 (53%), Gaps = 18/214 (8%)
Query: 290 IYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYED-DASIPRQQFHFRPINDVEGM 348
+Y S+G++K A K ++ +++ EI + S + +D + I + ++ F P+ +++
Sbjct: 1 VYTFSKGNVKVANKRYSSCNHNYEIVFEEDSQIVEVQDDVEDHIDKIKYSFCPVRELKSK 60
Query: 349 ENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRL 408
S VDL+ V+ P ++ KNG E +R L + D SG V++T W + N
Sbjct: 61 SVPSTVDLLVVIKDHRPAGTVNSKNGAELFRRNLTVCDESGCCVDVTFWNDLVN------ 114
Query: 409 QHMCDSGVF---PILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKN 465
+ D V P++A+K V D+ G+ T+++TQ+ + PD PEA +LK W+ G +
Sbjct: 115 --VVDESVLQTQPVVAMKGVSVRDYGGRSCSTLNSTQIEVNPDIPEAKQLKIWWANTGCS 172
Query: 466 TQSVSISRDSLSV----GRADIRK--TVSQIKDE 493
++S+ SV G+A + K T++++K++
Sbjct: 173 MAFTNLSQQGTSVPGSGGQAMVTKEMTIAEMKND 206
>gi|240848761|ref|NP_001155514.1| replication protein A 70 kDa DNA-binding subunit-like
[Acyrthosiphon pisum]
gi|239792426|dbj|BAH72558.1| ACYPI003269 [Acyrthosiphon pisum]
Length = 325
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 133/270 (49%), Gaps = 34/270 (12%)
Query: 232 WTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIY 291
W+I ARV K + Y +RG GK F L+D EIR F D+ + Q++ +Y
Sbjct: 17 WSITARVLKKSNVLPYQKERGTGKYFTAILIDK-TTEIRAKAFGDDCDRLFSQLQENNVY 75
Query: 292 LVSRGSLKPAQKNFNHLHNDLEIFLDMTSMV--QLCYEDDASIPRQQFHFRPINDVEGME 349
+ G ++ A K +N ND EI + T+++ + D S P + I +V M+
Sbjct: 76 NIKNGQIQLADKKYNKSKNDYEIIFNETTIIIQKFGVTDIPSHP----QLKTIENVFSMD 131
Query: 350 NNSVVDLIGVVSYISPTASLMRKNGTETQK-RTLHLRDMSGRSVELTLWG----NFCNDD 404
N+++D IGV+ I + + + N +T K R + L D + RSV +TLW NF ++
Sbjct: 132 QNTLIDTIGVIIEIEQSKEIKKNNSNDTYKLRNIILADCT-RSVTVTLWDIDATNFNANE 190
Query: 405 GLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTT---QLFIEPDFPEAHRLKEWFEK 461
G I+++ G++ N K V IS T ++ I P + E L+ W+ K
Sbjct: 191 G------------DIMSIMGGKI--INYKNVNKISVTGSSEIIINPYWNETFDLQIWY-K 235
Query: 462 EGKNTQSVSISRDSLSVGRADIRK-TVSQI 490
E + + +++S+ +S+G ++ +SQI
Sbjct: 236 EFEKKKLLNLSQ--VSIGSQELNMFEISQI 263
>gi|70952412|ref|XP_745376.1| replication factor A-related protein [Plasmodium chabaudi chabaudi]
gi|56525679|emb|CAH78783.1| replication factor A-related protein, putative [Plasmodium chabaudi
chabaudi]
Length = 482
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 101/457 (22%), Positives = 193/457 (42%), Gaps = 56/457 (12%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
+ I+ + Y+ KW IKA+V K +L + N + F D+ D G I + + A
Sbjct: 2 LFRISQITTYVSKWIIKAKVVNKSKLSTFKN---NNSFFSIDITDVHGDSISCKFWGSSA 58
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ-- 336
D++++ +E K+Y+ S+G + A +N++ + E+ + S + +DD I Q+
Sbjct: 59 DKWFNNIELKKVYIFSKGRVSIANPKYNNVKHKYELTFNEDSEIHEV-KDDGEIKIQKNI 117
Query: 337 --FHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVEL 394
+ R I + E DLIG+V +I P +L K G + K+ + + D + S E+
Sbjct: 118 SLVNLRDIK-IATKETPFTADLIGIVKHICPPNNLKTKQGNDIVKQNIIIVDDTKHSFEI 176
Query: 395 TLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
+ W + N L + + ++ ++ + +D G S+ + + ++
Sbjct: 177 SFWDSNVN---LIEKDLKENEIYIFTNISIRNWNDMKNGTFGVTSSIEKVENLNDELKNK 233
Query: 455 ---LKEWFEKEGKNTQSVSISRDSLS---VGRADIRKTVSQIKDEGLGTKEKPDWITVSA 508
+ EW+ GK Q ++ ++ LS + D VS + D LG +
Sbjct: 234 CLGISEWYNNNGKYEQFTNM-KNILSNDVIQTPDKHYAVSDVND-VLGKISGTYTLVGRI 291
Query: 509 TIVYIKCDN----FCYTACPIMIGDRPCNKKVMNNGDGR------------------WHC 546
+Y K F Y AC C KK++++G + C
Sbjct: 292 KRIYWKSKENEHRFYYPACT------KCKKKLLSSGQDNTQGMDYDNSNFNNDESCVYSC 345
Query: 547 DRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKF 606
CD++ V+ Y Y F D +G + AF + ++G A++L L DE
Sbjct: 346 MNCDENDVKPFYNYTFNFLFMDFSGSITLRAFSDEGFNLLGKKAEELKGL------DEDT 399
Query: 607 GEVVRNATF--TKYLFKLKVKEETFSDEQRVKSTVVK 641
+ + N F +Y ++V ++ ++ +RV T ++
Sbjct: 400 LDYLFNYDFLYKEYKVVVRVSQKIYNGIERVNFTAMR 436
>gi|82594604|ref|XP_725495.1| replication protein A large subunit [Plasmodium yoelii yoelii
17XNL]
gi|23480523|gb|EAA17060.1| replication protein A large subunit, putative [Plasmodium yoelii
yoelii]
Length = 487
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 101/463 (21%), Positives = 192/463 (41%), Gaps = 68/463 (14%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
+ I+ + Y+ KW IKA+V K +L + N + F D+ D G I + + A
Sbjct: 7 LFRISQITTYVSKWIIKAKVVNKSKLSTFKN---NNSFFSIDITDVHGDSISCKFWGSSA 63
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ-- 336
D++++ +E K+Y+ S+G + A +N + + E+ + S + +DD I Q+
Sbjct: 64 DKWFNNIELKKVYIFSKGRVSIANPKYNTVKHKYELTFNEDSEIHEV-KDDGEIKIQKNI 122
Query: 337 --FHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVEL 394
+ R I + E DLIG+V +I P +L K G + K+ + + D + S E+
Sbjct: 123 SLVNLRDIK-IATKETPFTADLIGIVKHICPPNNLKTKQGNDIIKQNIIIVDDTKHSFEI 181
Query: 395 TLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLF--IEPDFPEA 452
+ W + N L + + ++ ++ + +D G S+ + + + E
Sbjct: 182 SFWDSNVN---LIEKDLKENEIYIFTNISIRNWNDMKNGTFGVTSSIEKVENLNDELKEK 238
Query: 453 HR-LKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWIT-VSATI 510
+ EW+ GK Q ++ + + V Q D+ + D +T +S T
Sbjct: 239 CLGISEWYNNNGKYEQFTNM--------KNILSNDVIQTPDKHYALSDVNDVLTKISGTY 290
Query: 511 --------VYIKCDN----FCYTACPIMIGDRPCNKKVMNNGDGR--------------- 543
+Y K F Y AC C KK++++G
Sbjct: 291 TLVGRIKRIYWKSKENEHRFYYPACT------KCKKKLLSSGQDNTQGGDYDNSNFNNEE 344
Query: 544 ---WHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVD 600
+ C CD++ V+ Y Y F D +G + AF + ++G A++L L
Sbjct: 345 NCVYSCMNCDENNVKPFYNYTFNFLFMDFSGSITLRAFSDEGFNLLGKKAEELKGL---- 400
Query: 601 QNDEKFGEVVRNATF--TKYLFKLKVKEETFSDEQRVKSTVVK 641
DE + + N F +Y ++V ++ ++ +RV T ++
Sbjct: 401 --DEDSLDYLFNYDFLYKEYKVVVRVSQKIYNGIERVNFTAMR 441
>gi|403336688|gb|EJY67538.1| Subunit of heterotrimeric Replication Protein A (RPA) [Oxytricha
trifallax]
Length = 664
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 121/252 (48%), Gaps = 12/252 (4%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
+ +P LN WTIKA++ K E + +NN+RG G + + DL+D G I+ T F
Sbjct: 95 TNFVPFKQLNLQSQDWTIKAKILKKHEKKCWNNERGQGLLMNIDLIDQWGSTIQATFFKD 154
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
++F + ++ G +Y+ + G++K + + ++ + + D ++V+ C + IP
Sbjct: 155 GVEKFENLLQEGNVYIFTCGNVKTSNSKYTNMSSKYSLAFDKQALVKECETKEKFIPMGN 214
Query: 337 F-HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
+ + + ++ +E D+I V+ I T + KNG Q+ L + D +G V L
Sbjct: 215 LENIKSLPEIYKLERGQKCDVIVVIEQIGHTNFIPLKNGGLKQRSNLIVADDTGSCVLLC 274
Query: 396 LWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFP----E 451
+WG + + Q + D +L V+ ++SDF + S + IE + P +
Sbjct: 275 IWGR----EDIHFQDI-DPRNPSVLYVRNAKISDFGRFSLN--SNDESIIEVNPPNLQQK 327
Query: 452 AHRLKEWFEKEG 463
L+ W+ + G
Sbjct: 328 VRELQNWYRQIG 339
>gi|340387334|ref|XP_003392162.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Amphimedon queenslandica]
Length = 91
Score = 93.6 bits (231), Expect = 4e-16, Method: Composition-based stats.
Identities = 45/92 (48%), Positives = 62/92 (67%), Gaps = 2/92 (2%)
Query: 232 WTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIY 291
WTIKARVT+K LRHYNN RG+G++ + +D GEIR T FN AD+F+ VE K+Y
Sbjct: 1 WTIKARVTSKPPLRHYNNSRGEGRILTLEFVDHS-GEIRATAFNEDADRFFPNVEVNKVY 59
Query: 292 LVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQ 323
VSRG +KPA K + + +ND E+ L + ++
Sbjct: 60 YVSRGRIKPANKIY-YANNDYELTLGAETTIE 90
>gi|321465251|gb|EFX76253.1| hypothetical protein DAPPUDRAFT_249126 [Daphnia pulex]
Length = 182
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 10/155 (6%)
Query: 288 GKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEG 347
GK+Y +S+ LK A K ++ + ND E+ + + V C ++ IP F+F PI +
Sbjct: 30 GKVYYISQAKLKAANKQYSKIKNDYEMTFNKNTTVYTC-DEATKIPPITFNFLPIAQLPN 88
Query: 348 MENNSVVDLIGVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGL 406
M+ +SV+D+IGVV + K TE + R + + D + V LTLWG
Sbjct: 89 MDKDSVIDVIGVVKSAKDVRCITSKTTKTELKLREVQMVDSTNAEVNLTLWG-------- 140
Query: 407 RLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTT 441
+L D+ P++A+K ++SDF G+ +GT+S+T
Sbjct: 141 KLAEEFDATSKPVVALKGAKLSDFGGRSLGTVSST 175
>gi|156312429|ref|XP_001617826.1| hypothetical protein NEMVEDRAFT_v1g225758 [Nematostella vectensis]
gi|156195990|gb|EDO25726.1| predicted protein [Nematostella vectensis]
Length = 115
Score = 92.4 bits (228), Expect = 8e-16, Method: Composition-based stats.
Identities = 49/113 (43%), Positives = 65/113 (57%), Gaps = 5/113 (4%)
Query: 485 KTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRW 544
K +SQIK+E LG EK D+I+V VY + +N Y ACP CNKKV+ G +
Sbjct: 6 KFLSQIKNEQLGMGEKADYISVKGVCVYFRRENCMYKACP----SEECNKKVIEEDSG-F 60
Query: 545 HCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLK 597
+C++C + YR IL + D TG WVT FQE AE ++G SA DL +K
Sbjct: 61 YCEKCGRKYPNYKYRLILSAHLADFTGSQWVTCFQESAEALLGRSASDLGQMK 113
>gi|345484741|ref|XP_003425113.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Nasonia vitripennis]
Length = 167
Score = 91.7 bits (226), Expect = 1e-15, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 85/155 (54%), Gaps = 5/155 (3%)
Query: 209 LVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGE 268
+V K + S I + WT KARVT K ++++Y G +F+FDL+DS G +
Sbjct: 17 VVKKVKKDSNFITFKEAKKVITNWTFKARVTHKTDIKNY----ASGNLFNFDLIDSSG-Q 71
Query: 269 IRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYED 328
IR ++ + + F+ +V+ K+YL S LK + K +NH N E+ L S + C ++
Sbjct: 72 IRCVVYHPLVEHFFEKVDVNKVYLFSNVLLKASNKTYNHYDNLFELNLYEASTITECTDN 131
Query: 329 DASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYI 363
IP +++F + ++ + N ++D+IG+++ I
Sbjct: 132 AVDIPLNKYNFINLINLSDCKRNDIIDVIGIITNI 166
>gi|328726379|ref|XP_003248874.1| PREDICTED: replication factor A protein 1-like [Acyrthosiphon
pisum]
Length = 323
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 133/270 (49%), Gaps = 34/270 (12%)
Query: 222 IAALNPYMG--KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
IA LN + W+I RV K Y N+RG GK F L+D EIR F D
Sbjct: 5 IADLNNDLNGDNWSITVRVLKKSNKISYQNERGTGKYFTTILIDK-TTEIRAKAFGDDCD 63
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMV--QLCYEDDASIPRQQF 337
+ + Q++ +Y + G ++ A K +N+ ND EIF T+++ Q + D + P+
Sbjct: 64 RLFLQLQENNVYNIKNGKIQLADKEYNNSKNDYEIFFKETTIIIEQFGFTDIPTHPQ--- 120
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQK-RTLHLRDMSGRSVELTL 396
+ I + M+ N+++D IGV+ I + + +KN +T K R + L+D +G SV + L
Sbjct: 121 -LKTIENFWSMDINTLIDTIGVIIKIEKSKEIKKKNSNDTYKLRDIILKDKTGFSVTVVL 179
Query: 397 WG----NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTT---QLFIEPDF 449
W NF ++G I+++ G++ F K V IS T ++ I P +
Sbjct: 180 WDTEAINFNANEG------------DIMSIIDGQIIVF--KNVNKISVTGSSEILINPRW 225
Query: 450 PEAHRLKEWFEKEGKNTQSVSISRDSLSVG 479
L+ W+ KE + + +++S+ +S+G
Sbjct: 226 KVTEDLQSWY-KEFEKKELLNLSQ--MSIG 252
>gi|238616412|ref|XP_002399041.1| hypothetical protein MPER_00208 [Moniliophthora perniciosa FA553]
gi|215477155|gb|EEB99971.1| hypothetical protein MPER_00208 [Moniliophthora perniciosa FA553]
Length = 94
Score = 91.7 bits (226), Expect = 2e-15, Method: Composition-based stats.
Identities = 41/92 (44%), Positives = 67/92 (72%), Gaps = 1/92 (1%)
Query: 232 WTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIY 291
WTIKARVT K +++ ++NQRG+GK+F+ L+D + GEIR T FNAVAD Y +++ GK+Y
Sbjct: 3 WTIKARVTQKSDMKTWSNQRGEGKLFNVTLMD-ESGEIRGTAFNAVADDLYGRLDEGKVY 61
Query: 292 LVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQ 323
+S+ + A+K F+++ ND E+ L+ + ++
Sbjct: 62 YISKAKVNLAKKKFSNVSNDYELSLERNTEIE 93
>gi|68077085|ref|XP_680462.1| replication factor A-related protein [Plasmodium berghei strain
ANKA]
gi|56501391|emb|CAH98106.1| replication factor A-related protein, putative [Plasmodium berghei]
Length = 514
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 104/480 (21%), Positives = 202/480 (42%), Gaps = 55/480 (11%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQF 281
I+ + Y+ KW IKA+V K +L + N + F D+ D G I + + AD++
Sbjct: 38 ISQITTYVSKWIIKAKVVNKSKLSTFKN---NNSFFSIDITDVHGDSISCKFWGSSADKW 94
Query: 282 YHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ----F 337
++ +E K+Y+ S+G + A +N + + E+ + S + +DD I Q+
Sbjct: 95 FNNIELKKVYIFSKGRVSIANPKYNTVKHKYELTFNEDSEIHEV-KDDGEIKIQKNISLV 153
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLW 397
+ R I + E DLIG+V +I P +L K G + K+ + + D + S E++ W
Sbjct: 154 NLRDI-KIATKETPFTADLIGIVKHICPPNNLKTKQGNDIIKQNIIIVDDTKHSFEISFW 212
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLF--IEPDFPEAHR- 454
+ N L + + ++ ++ + +D G S+ + + + E
Sbjct: 213 DSNVN---LIEKDLKENEIYIFTNISIRNWNDMKNGTFGVTSSIEKVENLNDELKEKCLG 269
Query: 455 LKEWFEKEGKNTQSVSISRDSLS---VGRADIRKTVSQIKDEGLGTKEKPDWITVSATIV 511
+ EW+ GK Q ++ ++ LS + D +S + D + I
Sbjct: 270 ISEWYNNNGKYEQFTNM-KNILSNDVIQTPDKHYALSDVNDVLAKISGTYTLVGRIKRIY 328
Query: 512 YIKCDN---FCYTACPIMIGDRPCNKKVMNNGDGR------------------WHCDRCD 550
+ +N F Y AC C KK++++G + C CD
Sbjct: 329 WKSKENEHRFYYPACT------KCKKKLLSSGQDSAQGVDYDNSNFNNEENCVYSCMNCD 382
Query: 551 QSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVV 610
++ V+ Y Y F D +G + AF + ++G A++L L DE + +
Sbjct: 383 ENNVKPFYNYTFNFLFMDFSGSITLRAFSDEGFNLLGKKAEELKGL------DEDTLDYL 436
Query: 611 RNATFT--KYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSGDSTS 668
N F +Y ++V ++ ++ +RV T ++ Y S+ ++L+ + L D+ +
Sbjct: 437 FNYDFLYKEYKVVVRVSQKIYNGIERVNFTAMRIFPQKY-SDISYLLNEIQLLIPSDNNT 495
>gi|190688744|gb|ACE86407.1| putative replication protein [Sorghum bicolor]
Length = 213
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 102/197 (51%), Gaps = 29/197 (14%)
Query: 561 ILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLF 620
+L QIQDHTG+T+ TAFQ E I G +A++L+ ++ V+Q+D +F E+++ +YLF
Sbjct: 44 LLLCQIQDHTGVTYATAFQAAGEAIFGHTAQELFMIQNVEQDDMRFTEIMQAVLRREYLF 103
Query: 621 KLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSGDSTSFALKAENIIPKP 680
KLK+ EET++ EQRV +++ E+ ET +L + + D +S+ IP
Sbjct: 104 KLKIYEETYNGEQRVICSIIGVEKLE---ETNNLLKDVSRPILKDHSSY-------IPS- 152
Query: 681 EMTYTGTGNIGSRQTAPVVANYVGNNSNAGAASGLLANQMGQYGNQYSGSRLPAAGTSAA 740
G+ N+ ++Q+ +N G A +G G S + +AG A
Sbjct: 153 ----VGSANLEAKQSLLTSSNAYG-----------CATVVGDTGFAQSDG-IWSAGRGA- 195
Query: 741 RQSCSSCGAVGHSSMNC 757
Q+C C GH S +C
Sbjct: 196 -QACFKCNQPGHWSKDC 211
>gi|328700730|ref|XP_003241367.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Acyrthosiphon pisum]
Length = 323
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 115/236 (48%), Gaps = 24/236 (10%)
Query: 232 WTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIY 291
W+I ARV K ++ + + G+GK F L+D EIR T F D+ + Q++ +Y
Sbjct: 17 WSITARVLKKSDVLPF--KHGNGKYFTTILIDK-TTEIRATAFGNDVDRLFSQLQENNVY 73
Query: 292 LVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENN 351
+ G +K A K +N ND EI + ++++ D IP + I V M+ N
Sbjct: 74 NIKNGEIKEADKAYNKSKNDYEIIFNGLTVIERSGVTD--IPSHP-QLKTIEKVFSMDKN 130
Query: 352 SVVDLIGVVSYISPTASLMRKNGTETQ-KRTLHLRDMSGRSVELTLWG----NFCNDDGL 406
+++D IGV+ I + + + N +T R + L D SG V +TLW NF ++G
Sbjct: 131 TLIDTIGVIIKIEQSKKIKKINSNDTLILRNIILADKSGVRVTVTLWDTEATNFNANEG- 189
Query: 407 RLQHMCDSGVFPILAVKAGRVSDF-NGKVVGTISTTQLFIEPDFPEAHRLKEWFEK 461
+++ G++ D+ N K + ++++ I P++ E L+ W+++
Sbjct: 190 -----------DTMSIIGGKIIDYKNVKKISVTGSSKIEINPNWNETLHLQNWYKE 234
>gi|391336033|ref|XP_003742388.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Metaseiulus occidentalis]
Length = 173
Score = 89.4 bits (220), Expect = 7e-15, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 6/159 (3%)
Query: 496 GTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVE 555
G +KP ++ ATI + Y ACP + C KK + GDG + C++C S
Sbjct: 10 GVTDKPLYLWNRATITMFNKETSMYKACP----NENCMKKAQDQGDGNYSCEKCATSGPN 65
Query: 556 CDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATF 615
+R +L+ + D T W TAF E AE+I+G++A L Y + N ++ ++ +A F
Sbjct: 66 FKWRLVLKMAVADATKQLWCTAFNEKAEQILGVTAATLGD--YSENNPDEMDKIFADAMF 123
Query: 616 TKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFI 654
++ FK + + E + DE+R + V+ + + R +
Sbjct: 124 KQFHFKFRGRMEVYQDERRFNTAVIDVKEVKLVDDCRHL 162
>gi|301632434|ref|XP_002945290.1| PREDICTED: hypothetical protein LOC100497369, partial [Xenopus
(Silurana) tropicalis]
Length = 1160
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 77/138 (55%), Gaps = 11/138 (7%)
Query: 327 EDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISP-TASLMRKNGTETQKRTLHLR 385
+D A +P QF F PI ++E ++V+D+IG+ T +R N E KR ++L
Sbjct: 13 DDSADVPMVQFEFVPIGELESKNKDTVLDIIGICKNAEEVTKVTIRSNNREVSKRNINLM 72
Query: 386 DMSGRSVELTLWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLF 444
D SG+ V TLWG + DG R P++A+K R+SDF G+ + +S++ +
Sbjct: 73 DSSGKVVSTTLWGEDADKFDGSRQ---------PVVAIKGARLSDFGGRSLSVLSSSTVM 123
Query: 445 IEPDFPEAHRLKEWFEKE 462
I PD PEA +L+ W ++E
Sbjct: 124 INPDIPEAFKLRAWLDRE 141
>gi|297743679|emb|CBI36562.3| unnamed protein product [Vitis vinifera]
Length = 181
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 93/169 (55%), Gaps = 9/169 (5%)
Query: 498 KEKPDWITVSATIVYIKCD-NFCYTACPIMIGDRPCNKKVMNN-GDGRWHCDRCDQSVVE 555
++KP + ++ A I +IK D Y AC + CNKKV + G G W C+ C ++ E
Sbjct: 19 EDKPSFFSIRAYISFIKPDQTMWYRAC------KTCNKKVTDAIGSGYW-CEGCQKNDDE 71
Query: 556 CDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATF 615
C RYI+ ++ D +G W++ F + AE I G SA +L LK + + F + ++ A +
Sbjct: 72 CSLRYIMVVKVSDASGEAWLSLFNDQAERIFGCSADELDKLKSQEGEENLFQQKLKEAIW 131
Query: 616 TKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSG 664
LF++ V + + +E+R + T ++++E+R +L+ + K+K+
Sbjct: 132 VPQLFRISVAQHEYMNEKRQRITARAVVPVDFAAESRLLLEEISKMKTS 180
>gi|349805559|gb|AEQ18252.1| putative replication protein A DNA-binding subunit [Hymenochirus
curtipes]
Length = 298
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Query: 541 DGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVD 600
+G + C++CD+ YR I I D W+T FQE AE I+G +A L LK +
Sbjct: 180 NGLFRCEKCDKEFPNFKYRLIPSANIADFGENQWITCFQESAESILGQNAAYLGELK--E 237
Query: 601 QNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFIL 655
+N++ F EV +NA F Y+F+++VK ET++DE R+K+T ++ + +Y +R ++
Sbjct: 238 KNEQSFDEVFQNANFRSYIFRVRVKLETYNDESRIKATAMEVKPVDYKEYSRKLI 292
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 56/100 (56%), Gaps = 8/100 (8%)
Query: 366 TASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAG 425
T ++ N E KR +HL D SG V TLWG +D R D P++AVK
Sbjct: 89 TKVTIKSNNREVSKRNIHLMDSSGTVVSTTLWG----EDADRF----DGSRQPVVAVKGA 140
Query: 426 RVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKN 465
R+SDF G+ + +S++ + I PD PEA +L+ WF+ E +N
Sbjct: 141 RLSDFGGRSLSVLSSSTVMINPDIPEAFKLRAWFDSEQQN 180
>gi|391333842|ref|XP_003741319.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
Length = 269
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 118/242 (48%), Gaps = 14/242 (5%)
Query: 234 IKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLV 293
I+ RV +K LR + +GK+F F+L D + GEI +A+ + + G Y +
Sbjct: 36 IEGRVISKSPLREWKKADAEGKLFTFNLTD-NSGEISCIVSGELAEVLFPTISIGSCYEI 94
Query: 294 SRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSV 353
S KP+ ++ + EI L + ++ D +P++ I+++ +ENN
Sbjct: 95 SGFRPKPSHPQYSTTSHSCEIQLSKITRIKKIEGD--FLPKKPQSLIKISEILDIENNKS 152
Query: 354 VDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCD 413
VDLI +V + L ++G +K+ + L D S R+V L LWG + +R D
Sbjct: 153 VDLIAIVYDVMIPQMLACRDGQMREKQNVLLVDDSMRTVSLGLWG-----ESIR---TLD 204
Query: 414 SGVFPILAVKAGRVSDFNGKVVGTISTTQLF--IEPDFP-EAHRLKEWFEKEGKNTQSVS 470
++ ++A V ++NGK + + S+ + E D E L +W+++EG +++ +
Sbjct: 205 GKEGHVINIRAAAVKEYNGKKLLSTSSASILKHCESDLTREEQELADWWDREGHSSEFAA 264
Query: 471 IS 472
+S
Sbjct: 265 LS 266
>gi|297736060|emb|CBI24098.3| unnamed protein product [Vitis vinifera]
Length = 181
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 91/168 (54%), Gaps = 7/168 (4%)
Query: 498 KEKPDWITVSATIVYIKCD-NFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVEC 556
++KP + ++ A I +IK D Y AC + CNKKV + + C+ C ++ EC
Sbjct: 19 EDKPSFFSIRAYISFIKPDQTMWYRAC------KTCNKKVTDAIGSEYWCEGCQKNDDEC 72
Query: 557 DYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFT 616
RYI+ ++ D +G W++ F + AE I G SA +L LK + + F + ++ A +
Sbjct: 73 SLRYIMVVKVSDASGEAWLSLFNDQAERIFGCSADELDKLKSQEGEENLFQQKLKEAIWV 132
Query: 617 KYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKSG 664
LF++ V + + +E+R + T ++++E+R +L+ + K+K+
Sbjct: 133 PQLFRISVAQHEYMNEKRQRITARAVVPVDFAAESRLLLEEISKMKTS 180
>gi|403363046|gb|EJY81258.1| hypothetical protein OXYTRI_21347 [Oxytricha trifallax]
Length = 384
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 84/173 (48%), Gaps = 5/173 (2%)
Query: 204 YANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLD 263
+ NR + + S+ +PI ALN + W I+A++ K ELR QR V +++D
Sbjct: 123 FQNRQERNSTIIDSKYMPIKALNTFSRDWQIQAKLARKSELRE--TQRQKTVVLKIEIID 180
Query: 264 SDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQ 323
G I T F A F ++E K+YL S G +KP K F+ L ND I + T+ +
Sbjct: 181 VFGTTIECTFFADAAKDFNQRLEVNKVYLFSNGQVKPNDKRFSTLPNDFCIVFEQTANII 240
Query: 324 LCYEDDASIPRQ--QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNG 374
C E D I Q +F I +E + N +D+ GV+ ++ + KNG
Sbjct: 241 ECNE-DIQIEDQKGEFDNTLIGSIEECDVNKPIDVSGVIIEMADQEIVKLKNG 292
>gi|294943193|ref|XP_002783789.1| replication factor a 1, rfa1, putative [Perkinsus marinus ATCC
50983]
gi|239896511|gb|EER15585.1| replication factor a 1, rfa1, putative [Perkinsus marinus ATCC
50983]
Length = 117
Score = 85.5 bits (210), Expect = 1e-13, Method: Composition-based stats.
Identities = 43/90 (47%), Positives = 61/90 (67%), Gaps = 2/90 (2%)
Query: 221 PIAALNPY-MGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
PI ++ Y M WTIKARVTAK +RH+ N RG G VF DLLD +G EIR + FNA A+
Sbjct: 6 PIREISSYSMRNWTIKARVTAKSPVRHFTNARGGGSVFSVDLLDKEGSEIRGSFFNAAAE 65
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLH 309
+F ++ GK+Y S+G++K +++ + LH
Sbjct: 66 KFDKLLQKGKVYTFSKGNVKIGKED-DELH 94
>gi|115470979|ref|NP_001059088.1| Os07g0190600 [Oryza sativa Japonica Group]
gi|34394551|dbj|BAC83855.1| DNA binding protein-like [Oryza sativa Japonica Group]
gi|113610624|dbj|BAF21002.1| Os07g0190600 [Oryza sativa Japonica Group]
Length = 544
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 100/427 (23%), Positives = 182/427 (42%), Gaps = 34/427 (7%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQF 281
++ +N W IK RV L + +R D L+D +G I +F
Sbjct: 6 LSQINSTRHNWRIKVRVARSWHLSGTSKRR-DFTALELILVDEEGVGITACVGENEIQKF 64
Query: 282 YHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQ-LCYEDDASIPRQQFHFR 340
+ G Y + + K N + + IF ++V+ + E S+P F+F
Sbjct: 65 STSIVEGHAYFLRNFRVSRQTKKLNAVPSTYAIFFTPWTIVEEIPTEISGSLPLYIFNFV 124
Query: 341 PINDVE--GMENNSVVDLIGVVSYISPTASLMRKNGTE--TQKRTLHLRDMSGRSVELTL 396
D++ N +VD+IG ++ + P L++ NG + +R + LRD+S R +E+TL
Sbjct: 125 DFEDLDERARHPNGLVDVIGQLTVVHP---LVQSNGLNGPSVRRNVELRDLSDRLLEITL 181
Query: 397 WGNFCN--DDGLRLQHMCDSGVFPILAVKAG-RVSDFNGK-VVGTISTTQLFIEPDFPEA 452
W +D ++ + P++ V AG + F+G + + T+ +I D PE
Sbjct: 182 WAEHATSFEDEFLIETIGKDE--PVIIVFAGLNMKLFSGAPSCRSSAATKWYINIDIPEI 239
Query: 453 HRLKEWFEKEGKNTQSVSISRDSLSVGRADI----RKTVSQIKDEGLGTKEKPDW-ITVS 507
+ + +G+ + + + D ++G A+ RK++S++ L + D T
Sbjct: 240 NAFRTSL--QGRGCEVLLVPSDGAALGAANEADANRKSISELL--SLNPHDNNDVRFTCD 295
Query: 508 ATIVYIKCDN-FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQI 566
A I I + + Y AC I C K V G + C CD + Y L I
Sbjct: 296 ARIKEIDVSSGWWYKACSI------CRKGVKPTLQG-FECVNCDNTEPIITPSYKLNVVI 348
Query: 567 QDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKE 626
+D+T + F AE+++ +A DL ++ N +R +++F++ + E
Sbjct: 349 EDNTDRAKIFMFGGMAEQVVRRTAADL--VEESSANQLLLPSPLRALIGRRFVFQIVISE 406
Query: 627 ETFSDEQ 633
+TF Q
Sbjct: 407 QTFRTGQ 413
>gi|328865102|gb|EGG13488.1| putative ssDNA-binding protein [Dictyostelium fasciculatum]
Length = 669
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 99/419 (23%), Positives = 180/419 (42%), Gaps = 45/419 (10%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLD---SDGGEIRVTCF- 274
I I AL+ MG +TI A V K +++ + N G++F + D S I+ T F
Sbjct: 204 ICDIDALSEGMGSYTICAVVKNKSDIKEWKNVTSSGRLFSVEFADDSPSTCNTIKATVFG 263
Query: 275 NAVADQFYHQVEAGKIYLVS-RGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIP 333
+ + Q+EAGK Y+VS G ++ + FN+ + E+ L + + + I
Sbjct: 264 DPYCASLHQQLEAGKTYMVSGSGGVRKNSQKFNNTKHQYELTLGRDTTITPVTDQSQVIK 323
Query: 334 RQ---QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTL-----HLR 385
+F F PIN + + N +VD++G V+ +S + K + + L +R
Sbjct: 324 SAGVVKFQFTPINSLVSLGANMMVDVLGEVTSVSTPIDITTKATERAKSKVLPKWAITIR 383
Query: 386 DMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFI 445
D + +E++ WG DD + + G+ I+ +K +++ FNG + ++++ +
Sbjct: 384 DNTNSGIEVSFWG----DDVAKYLNQITVGM--IVGIKNAKLTQFNGHSLSFGYSSEIVL 437
Query: 446 EPDFPEAHR-LKEWFEKEGKNTQSVSISRDSLSVGRADIRK----TVSQ---IKDEGLGT 497
+P + + ++W T S+++ S G + + TV++ I+ E
Sbjct: 438 DPRHLDQYEGFRQWI-AHNSGTNCASLTQRSTFTGNSTNKDAPVLTVAELLAIQTEPFDA 496
Query: 498 KEKPDWITVSATI------VYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQ 551
P+ V TI I DN + G C KKV G C+
Sbjct: 497 NNNPNQYVVHGTIRRGAFAKEISRDNGPTVSTCWYEGCAGCFKKVCG---GLPKCEAPRM 553
Query: 552 SVVECDYRYILQFQIQDHTG-LTWVTAFQECAEEIMG--MSAKDLYSLKYVDQNDEKFG 607
+ + + L +I D TG L+ V FQ A I+G + L S ++ + D++ G
Sbjct: 554 TNI-----WKLPIKIADDTGTLSNVDLFQSIALPILGPISDYEHLDSTAFIAKLDKELG 607
>gi|241617732|ref|XP_002408205.1| replication factor A 1, rfa1, putative [Ixodes scapularis]
gi|215502936|gb|EEC12430.1| replication factor A 1, rfa1, putative [Ixodes scapularis]
Length = 347
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 75/133 (56%), Gaps = 5/133 (3%)
Query: 431 NGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSIS-RDSLSVGRADIRKTVSQ 489
+G + I ++QL + PD PE+H L W+ EG + Q+ S+S R G A K +S+
Sbjct: 183 SGVSLSMIGSSQLQVNPDIPESHALIGWYSNEGASLQTQSLSVRTGGFEGAAASWKHLSE 242
Query: 490 IKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRC 549
K + LG +KPD+ + A++ ++ +N Y ACP CNKK++N +G + C++C
Sbjct: 243 AKSQKLGFGDKPDYFSCKASVAIVRKENCLYKACPA----EKCNKKLVNLENGLYRCEKC 298
Query: 550 DQSVVECDYRYIL 562
++ E +R I+
Sbjct: 299 NEQTSEFKWRLIV 311
>gi|281210368|gb|EFA84534.1| putative ssDNA-binding protein [Polysphondylium pallidum PN500]
Length = 636
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 111/429 (25%), Positives = 179/429 (41%), Gaps = 75/429 (17%)
Query: 233 TIKARVTAKGELRHYNNQRGDGKVFHFDLLD--SDGGEIRVTCF-----NAVADQFYHQV 285
TI+A V AK ++ ++N G + + +L+D + EI+VT F N + Q +
Sbjct: 183 TIRATVRAKSTIKQWHNSNSGGSILNLELIDDSDEKNEIKVTIFGRNNENNLCVQIDEAI 242
Query: 286 EAGKIYLVSRGSLKPAQKNFNHLHNDLEI-FLDMTSMVQLCYEDDASI-PRQQFHFRPIN 343
G Y S + P NFN L + E+ F + T Y A I ++F I
Sbjct: 243 HVGSTYDFSNFKINPKNPNFNKLSHPCELTFTENTKY----YVSSAPINAHTLYNFVKIA 298
Query: 344 DVE---GMENNS-VVDLIGVVSYISPTASLMRKNGTETQ-------KRTLHLRDMSGRSV 392
D+ E NS +DL G VS +S T S+ RK + T K T + D S +S+
Sbjct: 299 DLTPPAANETNSPPIDLFGYVSNVSGTTSINRKATSNTDNANSTLLKCTFRILDTSAKSI 358
Query: 393 ELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFP-- 450
++T +G + + G I+A+K+ ++S F K +I+ + + E + P
Sbjct: 359 DVTAFG----QQAETISKQLNKG--NIIAIKSAKISSF-SKCSASITYSSTY-EVNPPQL 410
Query: 451 --EAHRLKEWFEKEGKNTQSVSISRDSLSVGRAD----IRKTVSQIKDEGLGTKE--KPD 502
E L W G + + +S S ++ G +D IR TV + LG +
Sbjct: 411 QQECQNLLMWVNSHGDDAECLSESY--VAGGNSDDKDSIRCTVEVLPQLNLGNDPILTKN 468
Query: 503 WI------TVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVEC 556
++ T+S + YT C C KK N C Q ++
Sbjct: 469 YVVVGTLSTLSNVSLTSNDQKSQYTGC------SACKKKNCN----------CGQPQIK- 511
Query: 557 DYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQ-NDEKFGEVVRNATF 615
Y F++QD TG V AF E+++G +A+ ++ DQ DE + V
Sbjct: 512 --YYRATFRLQDETGSVLVDAFSGTVEKMLGANAE-----RFFDQLTDEDRLQRVNEICS 564
Query: 616 TKYLFKLKV 624
YL +L+V
Sbjct: 565 VPYLVRLRV 573
>gi|302823886|ref|XP_002993591.1| hypothetical protein SELMODRAFT_431648 [Selaginella moellendorffii]
gi|300138603|gb|EFJ05366.1| hypothetical protein SELMODRAFT_431648 [Selaginella moellendorffii]
Length = 160
Score = 82.0 bits (201), Expect = 1e-12, Method: Composition-based stats.
Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 2/142 (1%)
Query: 455 LKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIK 514
L+EW T + +S S S T+S+I + L E V AT+ +K
Sbjct: 7 LREWMTLYYNVTNFIHLSTSS-SRQTVSCTTTLSEISNMQLKVLESSPIYRVIATVKEMK 65
Query: 515 CDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTW 574
D F Y AC ++ R C KK DG W C+ C+ +++Y L+ I+D + W
Sbjct: 66 TDEFYYNACINVVNARQCGKKTTRTADG-WFCNYCNFESANMEFKYALKMCIEDSSSHVW 124
Query: 575 VTAFQECAEEIMGMSAKDLYSL 596
AFQE +EI+GMSAK+L ++
Sbjct: 125 AIAFQEATQEIVGMSAKELATI 146
>gi|413953613|gb|AFW86262.1| hypothetical protein ZEAMMB73_440412 [Zea mays]
Length = 629
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/350 (23%), Positives = 144/350 (41%), Gaps = 16/350 (4%)
Query: 244 LRHYNNQRGDGKVFHFD--LLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPA 301
+ + + + + K+ H D L+D +GG + +A F ++ G +Y VS +K A
Sbjct: 163 MWEFYDPQDESKLLHADMVLIDEEGGSAHAQIYPPLAAVFKPMIKEGNVYNVSYVQIKKA 222
Query: 302 QKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMEN--NSVVDLIGV 359
+ + + ND+ I + V+ E + P + P + + + + +D+IG
Sbjct: 223 NRMYKLVDNDIMIGFTKWTTVEELIEVPPAFPELVYSLTPFDQLTTLVDIREYFIDVIGA 282
Query: 360 VSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFP 418
V+ IS A++ K T+T KR++ +++ S +E+ LWG +
Sbjct: 283 VTMISDVATIRTKMRQTQTAKRSVTIQNESCTPLEVVLWGEQATSFPADQISIAGQDSLQ 342
Query: 419 ILAVKAGRVSDFNGKVVGTI-STTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLS 477
I+ + G T S+ + ++ P PEA L + + +V+ S ++
Sbjct: 343 IIIFVGTLARSYAGTTSLTCGSSCKWYVNPQVPEATSLAASLQHKRSPIMAVAGSTQRVT 402
Query: 478 VGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDN-FCYTACPIMIGDRPCNKKV 536
K VS+IK EK +W+ T+ +K D + Y +C R C KK
Sbjct: 403 RISTAEHKKVSEIKHMHPFKHEKVEWLI---TVTVLKIDQLWWYESC------RKCLKKT 453
Query: 537 MNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM 586
+GD D V + RY L D TG T F A+ I+
Sbjct: 454 KPHGDAYKCSDSGCGHVGPPNPRYRLLITAGDETGETDFILFGRMAQHIV 503
>gi|391329407|ref|XP_003739166.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
Length = 291
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 126/263 (47%), Gaps = 23/263 (8%)
Query: 234 IKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLV 293
+ RV +K ++++ +GK+F F + DS G I+V D + ++ G Y +
Sbjct: 45 VHGRVVSKSNMKNWKKNNQEGKLFSFVIEDSSGS-IQVVTSGDRCDALHEEITVGDCYRL 103
Query: 294 SRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSV 353
+ +L + +N + LEI + T + Q+ ++PR + + I ++ E N++
Sbjct: 104 NAFTLHESNPLYNKTKHPLEIHI--TKLSQVKKIQGKNLPRSKINNITIAEIMNTELNTL 161
Query: 354 VDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCD 413
+D+IG+V + +L ++G K+ + L D + R V L +W N N G + C
Sbjct: 162 IDIIGIVYEVGHPQNLSCRDGVMRIKQNIRLVDNTLRVVNLGVWNNAQNFAG--TEGKC- 218
Query: 414 SGVFPILAVKAGRVSDFNG-KVVGTISTTQLFIEPDFPEAHRLKEWFEKEG--KNTQSVS 470
+A+ V ++ G KV+ T +T L EP+ P+ L+ WF ++G + Q ++
Sbjct: 219 ------VAITNLLVREYAGKKVLTTTDSTILKSEPNDPDLKTLEAWFTRDGQYQEFQELA 272
Query: 471 ISRDSLSVGRADIRKTVSQIKDE 493
I++ S + T S + DE
Sbjct: 273 IAKPS--------QATTSSVPDE 287
>gi|413953822|gb|AFW86471.1| hypothetical protein ZEAMMB73_862151 [Zea mays]
Length = 662
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 80/350 (22%), Positives = 143/350 (40%), Gaps = 16/350 (4%)
Query: 244 LRHYNNQRGDGKVFHFD--LLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPA 301
+ + + + + K+ H D L+D +GG + +A F ++ G +Y VS +K A
Sbjct: 163 MWEFYDPQDESKLLHADMVLIDEEGGSAHAQIYPPLAAVFKPMIKEGNVYNVSYVQIKKA 222
Query: 302 QKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMEN--NSVVDLIGV 359
+ + + ND+ I ++V+ E + P + P + + + + +D+IG
Sbjct: 223 NRMYKPVDNDIMIGFTKWTIVEELIEVPPAFPELVYSLTPFDQLTTLVDIREYFIDVIGA 282
Query: 360 VSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFP 418
V+ IS A++ K T+T KR++ +++ S +E+ LWG +
Sbjct: 283 VTMISDVATIRTKMRQTQTAKRSVTIQNESCTPLEVVLWGEQATSFPADQISIAGQDSLQ 342
Query: 419 ILAVKAGRVSDFNGKVVGT-ISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLS 477
I+ + G T S+ + ++ P PEA L + + + + S +
Sbjct: 343 IIIFVGTLARSYAGTTSLTGGSSCKWYVNPQVPEATSLAASLQHKRSPIMAAAGSTQHVP 402
Query: 478 VGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDN-FCYTACPIMIGDRPCNKKV 536
K VS+IK EK +W+ T+ +K D + Y +C R C KK
Sbjct: 403 RISTAEHKKVSEIKHLHPFKHEKVEWLI---TVTVLKIDQLWWYESC------RKCLKKT 453
Query: 537 MNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM 586
+GD D V + RY L D TG T F A+ I+
Sbjct: 454 KPHGDAYKCSDSGCGHVGPPNPRYRLLITAGDETGETDFILFGRMAQRIV 503
>gi|225464095|ref|XP_002263643.1| PREDICTED: uncharacterized protein LOC100255160 [Vitis vinifera]
Length = 979
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 45/54 (83%)
Query: 449 FPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPD 502
F E +LKEWF+KEG+NT SVSISR+ +++GR D+RKT+SQI+DE GT EKPD
Sbjct: 926 FSEGCKLKEWFDKEGRNTPSVSISREVITIGRTDVRKTISQIRDERQGTSEKPD 979
>gi|357473253|ref|XP_003606911.1| Replication factor A 51 kDa subunit [Medicago truncatula]
gi|357477581|ref|XP_003609076.1| Replication factor A 51 kDa subunit [Medicago truncatula]
gi|357477673|ref|XP_003609122.1| Replication factor A 51 kDa subunit [Medicago truncatula]
gi|355507966|gb|AES89108.1| Replication factor A 51 kDa subunit [Medicago truncatula]
gi|355510131|gb|AES91273.1| Replication factor A 51 kDa subunit [Medicago truncatula]
gi|355510177|gb|AES91319.1| Replication factor A 51 kDa subunit [Medicago truncatula]
Length = 502
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 96/398 (24%), Positives = 178/398 (44%), Gaps = 30/398 (7%)
Query: 238 VTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGS 297
+T K E+ + D KVF ++ I T + ++ GKIY++S
Sbjct: 48 ITKKKEIISTDMVLIDEKVF----INEIANCIHATIPRRFSPSLKKVLQEGKIYVISHFE 103
Query: 298 LKPAQKNFNHLHND---LEIFLDMTSMVQLCYEDDASIPRQQFHFRPIND-VEGMENNSV 353
+ ++ + + N+ L + D ++V DD +IPR F F ND ++ +
Sbjct: 104 VSKNKEKYAVVENNPSMLSFYGD--AIVTEEGSDDNTIPRYIFEFVNFNDLIKRCGKEVL 161
Query: 354 VDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCD 413
D+IG + + P NG + +LHL D SG +++TLW ++ +L
Sbjct: 162 ADVIGFIIDVDPIEEKTTVNG-KVDMLSLHLGDGSGNVLKVTLWDDYAPMFNQKLIDQMH 220
Query: 414 SGVFPILAV-KAGRVSDFNGKV---VGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSV 469
+ P +A+ + V + G V + +T ++I D PE L +GKN SV
Sbjct: 221 ATPKPNVAIFTSTLVKQYQGNCELYVSSSRSTTIYINIDTPEVADL--ILSSKGKN--SV 276
Query: 470 SISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWI-TVSATIVYIKCDN-FCYTACPIMI 527
+ ++LS+ D+ KT+S++ + + D + AT+ I N Y +CP
Sbjct: 277 LKTTETLSLTNVDV-KTISELLSMAVSGVYQGDVVYNCVATVDDILLKNGLYYVSCP--- 332
Query: 528 GDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMG 587
C +K +++ + ++C+ C + V RY L+ Q+ D T T F E AE++
Sbjct: 333 ---HC-RKTVSSTETDFNCEHCTKKVDYPKIRYRLELQVNDSTESTIFVLFAEVAEQLAQ 388
Query: 588 MSAKDLY-SLKYVDQNDEKFGEVVRNATFTKYLFKLKV 624
+ DL L+ D + +++ +K++F++K+
Sbjct: 389 LKLDDLTPDLENQTGRDSDLPKQLQHIIGSKHIFQVKL 426
>gi|442748039|gb|JAA66179.1| Hypothetical protein [Ixodes ricinus]
Length = 103
Score = 79.7 bits (195), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Query: 561 ILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLF 620
IL I D+ WVT FQE AE I+G S L LK D+N++ F E+ +NA F ++F
Sbjct: 2 ILSVNIADYQDNQWVTCFQESAEAILGQSTAYLGELK--DKNEQAFEEIFQNANFRSFVF 59
Query: 621 KLKVKEETFSDEQRVKSTVVKAERYNYSSETR 652
K++VK ET++DE R+K+TV+ + +Y +R
Sbjct: 60 KIRVKLETYNDESRIKATVMDVKPVDYREYSR 91
>gi|391335288|ref|XP_003742027.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
Length = 384
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 135/309 (43%), Gaps = 29/309 (9%)
Query: 237 RVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG 296
RV +K E+ ++ +GKVF + D+ +I++ FN QF ++ + Y +
Sbjct: 67 RVVSKKEIHTWSKGSSNGKVFSCQVADA-STDIQIVAFNDNCLQFSEILQEHQEYDIEGF 125
Query: 297 SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDL 356
+ + A FN + LEI L+ + ++ I + ++ ++++ M+ N +VD+
Sbjct: 126 ACRQANPIFNTTSSKLEIVLNKGTKIRALNRATLRIAEKSPNYVSFSELQSMKENDIVDV 185
Query: 357 IGVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSG 415
GV+ ++SP RK +G KR L + D + + + LW N + +
Sbjct: 186 CGVIIHVSPVEEFTRKRDGKPIVKRELRIVDEDRKILTINLWNERTNTELVEK------- 238
Query: 416 VFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK--EWFEKEGKNTQSVSISR 473
++V+ GR++ F G + + I+ D LK +W+EK G + S
Sbjct: 239 --VAVSVRHGRINIFRGNLSSNCESASK-IDSDLGNERLLKLSQWWEKHG-----LEASG 290
Query: 474 DSLSVGRADIRKTVS------QIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMI 527
D+ S +++ KTV+ ++K E K P A I + ++ Y AC
Sbjct: 291 DNSSNRNSELMKTVNFEAAQREVKIEAGSVKSPPFVFWTRARIATVAQNSLMYRAC---- 346
Query: 528 GDRPCNKKV 536
C KKV
Sbjct: 347 AKTNCLKKV 355
>gi|70914008|ref|XP_731701.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56501834|emb|CAH83538.1| hypothetical protein PC300559.00.0 [Plasmodium chabaudi chabaudi]
Length = 90
Score = 79.3 bits (194), Expect = 9e-12, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 244 LRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQK 303
+R + +GKVF+ +L D + GEI+V F D++Y +E GKIY +S+G++K A K
Sbjct: 1 IRKFYTGNKEGKVFNIELCD-ESGEIKVNFFGKAVDKWYDYLEVGKIYKISKGNIKSANK 59
Query: 304 NFNHLHNDLEIFLDMTSMVQLCYEDDASIPR 334
FN L +D EI LD S+++L E+D +IP+
Sbjct: 60 KFNTLKHDCEITLDENSILELLEENDMNIPK 90
>gi|357484727|ref|XP_003612651.1| Replication factor A protein [Medicago truncatula]
gi|355513986|gb|AES95609.1| Replication factor A protein [Medicago truncatula]
Length = 477
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 86/351 (24%), Positives = 163/351 (46%), Gaps = 26/351 (7%)
Query: 285 VEAGKIYLVSRGSLKPAQKNFNHLHND---LEIFLDMTSMVQLCYEDDASIPRQQFHFRP 341
++ GKIY++S + ++ + + N+ L + D ++V DD +IPR F F
Sbjct: 59 LQEGKIYVISHYEVSKNKEKYAVVENNPSMLSFYGD--AIVTEEGSDDNTIPRYIFEFVN 116
Query: 342 IND-VEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNF 400
ND ++ + D+IG + + P NG + +LHL D SG +++TLW ++
Sbjct: 117 FNDLIKRCGKEVLADVIGFIIDVDPIEEKTTVNG-KVDMLSLHLGDGSGNVLKVTLWDDY 175
Query: 401 CNDDGLRLQHMCDSGVFPILAV-KAGRVSDFNGKV---VGTISTTQLFIEPDFPEAHRLK 456
+L + P +A+ + V + G V + +T ++I D PE L
Sbjct: 176 APMFNQKLIDQMHATPKPNVAIFTSTLVKQYQGNCELYVSSSRSTTIYINIDTPEVADL- 234
Query: 457 EWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWI-TVSATIVYIKC 515
+G+N SV + ++LS+ D+ KT+S++ + + D + AT+ I
Sbjct: 235 -ILSSKGEN--SVLKTTETLSLTNVDV-KTISELLSMAVSGVYQGDVVYNCVATVDDILL 290
Query: 516 DN-FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTW 574
N Y +CP C +K +++ + ++C+ C + V RY L+ Q+ D T T
Sbjct: 291 KNGLYYVSCP------HC-RKTVSSTETDFNCEHCTKKVDYPKIRYRLELQVNDSTESTI 343
Query: 575 VTAFQECAEEIMGMSAKDLY-SLKYVDQNDEKFGEVVRNATFTKYLFKLKV 624
F E AE++ + DL L+ D + +++ +K++F++K+
Sbjct: 344 FVLFAEVAEQLAQLKLDDLTPDLENQTGRDSDLPKQLQHIIGSKHIFQVKL 394
>gi|402073226|gb|EJT68830.1| hypothetical protein GGTG_13608 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 230
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
+ PI +++PY KW IKARVT+K ++R ++ GK+F +LLD + GEI+ T FN
Sbjct: 121 VYPIESISPYQHKWAIKARVTSKSDIRTWHKPSEKGKLFSVNLLD-ETGEIKATGFNNEC 179
Query: 279 DQFYHQVEAGKIYLVSRG-SLKPAQKNFNHLHNDLEI 314
D+FY ++ ++Y +S ++ A+K F +L ND E+
Sbjct: 180 DKFYELLQENQVYYISSPCRVQMAKKQFTNLPNDYEL 216
>gi|328705572|ref|XP_003242847.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Acyrthosiphon pisum]
Length = 386
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 108/234 (46%), Gaps = 25/234 (10%)
Query: 232 WTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIY 291
+ +K V K + Y++ R V + +++DS G +RV+ FN ++D E K Y
Sbjct: 167 FVLKLTVVKKYAINTYSSCR----VLNVNMMDS-TGVVRVSAFNTLSDSLNEIFEENKTY 221
Query: 292 LVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENN 351
++ LK HN + L + S + D P+ Q+ + N + +ENN
Sbjct: 222 YLADTILK---------HNQFGVELKLQSHSVIIESIDKIQPKIQY-IKTSNFNKLLENN 271
Query: 352 --SVVDLIGVVSYISPTASLMRKNG-TETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRL 408
+ DLIGV I + TE KR + L DMS ++ L +WG+ N +
Sbjct: 272 PNTFCDLIGVCIEIGDIEACSNSTSRTEIGKREIVLIDMSMATITLKVWGDQVN----KF 327
Query: 409 QHMCDSGVFPILAVKAGRVSDFNG-KVVGTISTTQLFIEPDFPEAHRLKEWFEK 461
D+ PI+ VK + FNG K + + LFI P+ E H+LKEW+++
Sbjct: 328 DEKFDNP--PIVMVKQAVLKQFNGAKYFSMVKFSVLFINPNLAEVHQLKEWYKQ 379
>gi|391327595|ref|XP_003738283.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
Length = 296
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 116/236 (49%), Gaps = 14/236 (5%)
Query: 234 IKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLV 293
I+ RV ++ +R ++ + +G +F F + DS +I V + + + ++ GK Y++
Sbjct: 51 IQGRVESESPIRSWSREGAEGIIFSFIVNDS-SSDINVVASGEICAELHEKISVGKCYVI 109
Query: 294 SRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSV 353
S LK +N + LEI L S V ++P +F + ++ NS+
Sbjct: 110 SAFKLKKINPQYNITSHQLEIQLTKISKVTEII--GINLPENTTNFITLAEIGSSAVNSM 167
Query: 354 VDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLR-LQHMC 412
VD++G++ ++ + M ++GT +K+ + + D + + V L+LW D L ++ C
Sbjct: 168 VDILGIIHEVADEQNFMCRDGTSRKKKNVRIVDDTKKIVTLSLWSEHA--DILNGMESQC 225
Query: 413 DSGVFPILAVKAGRVSDFN-GKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQ 467
S ++ V FN KV+ T S+T + ++ RL++W+ +EG++ +
Sbjct: 226 VSIHNVVIRV-------FNMKKVLTTTSSTSAKLAVITADSERLQKWWNEEGQDEE 274
>gi|298710030|emb|CBJ31748.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 212
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 98/216 (45%), Gaps = 19/216 (8%)
Query: 26 RFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNRMIVIVMDLDVI 85
R+R+VLSDG Q MLATQ+NE+++SG L+ ++ L+ + NV+QN+ ++I++ LDV
Sbjct: 8 RWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVT 67
Query: 86 IDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPAAR 145
IG P+ N S G Q G S + N P +T A R
Sbjct: 68 SGPTPKIGDPI-------NFSEDSSAGVKQELGGGSSNNNTGNYGGGSKP-NTGGYGAGR 119
Query: 146 HVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYA 205
V + N + GA + +N A N + +P YA
Sbjct: 120 DVKPKVANNPY----GAANKQANNPYAGGGNNNSYGGGGGNYGGGGGARDGAANNP--YA 173
Query: 206 NRGL-----VGKSEVPSRIIPIAALNPYMGKWTIKA 236
NRG V + S +PI+A+NPY +WTIKA
Sbjct: 174 NRGSSNSGPVQRQSQDSAYMPISAINPYQNRWTIKA 209
>gi|414585088|tpg|DAA35659.1| TPA: hypothetical protein ZEAMMB73_284494 [Zea mays]
Length = 524
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/350 (22%), Positives = 141/350 (40%), Gaps = 16/350 (4%)
Query: 244 LRHYNNQRGDGKVFHFD--LLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPA 301
+ + + + + + H D L+D +GG + +A F ++ G +Y VS +K A
Sbjct: 25 MWEFYDPQDESNLLHADMVLIDEEGGSAHAQIYPPLAAVFKPMIKEGNVYNVSYVQIKKA 84
Query: 302 QKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMEN--NSVVDLIGV 359
+ + + ND+ I + ++ E + P + P + + + + +D+IG
Sbjct: 85 NRMYKPVDNDIMIGFTKWTTIEELIEVPPAFPEIGYSLTPFDQLTTLVDIREYFIDVIGA 144
Query: 360 VSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFP 418
V+ IS A++ K T+T KR++ +++ S +E+ +WG +
Sbjct: 145 VTMISDVATIRTKMRQTQTAKRSVTIQNESCTPLEVVMWGGQATSFPADQISIAGQDSLQ 204
Query: 419 ILAVKAGRVSDFNGKVVGT-ISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLS 477
I+ + G T S+ + ++ P PEA L + + S + S +
Sbjct: 205 IIIFVGTLARSYAGTTSLTGGSSCKWYVNPQVPEATSLAASLQHKRSPIMSAAGSTQRVP 264
Query: 478 VGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDN-FCYTACPIMIGDRPCNKKV 536
K VS+IK EK +W+ T+ +K D + Y +C R C KK
Sbjct: 265 RISTAEHKKVSEIKHLHPFKHEKVEWL---VTVTVLKIDQLWWYESC------RKCLKKT 315
Query: 537 MNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM 586
+GD D V + RY L D TG T F A+ I+
Sbjct: 316 KPHGDAYKCSDSGCGHVGPPNPRYRLLITAGDETGETDFILFGHMAQRIV 365
>gi|357516559|ref|XP_003628568.1| Replication factor A protein [Medicago truncatula]
gi|355522590|gb|AET03044.1| Replication factor A protein [Medicago truncatula]
Length = 559
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 88/356 (24%), Positives = 155/356 (43%), Gaps = 56/356 (15%)
Query: 232 WTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIY 291
W I+ RV E+ + + LLD G +I+ + F ++ G++Y
Sbjct: 18 WRIRVRVVRMWEVPTFL-KPNQANSLEMVLLDQMGVKIQAIVRKQLIYVFQKRLREGEVY 76
Query: 292 LVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEG--ME 349
+S S+ P+ ++ + +I MT+ VQ C A+IP F I DV +E
Sbjct: 77 NISYFSVAPSTGSYRAATHPYKIVFQMTTKVQSC--TSATIPLYGLSFTSIVDVSNHTVE 134
Query: 350 NNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQ 409
+ +VD++G+V+ +S +R +G+ T+ + D SG+ +E L+G +
Sbjct: 135 YDYLVDVMGLVTAVSEEREYVR-DGSVTKMIIFEVTDHSGK-IECALFGEY--------- 183
Query: 410 HMCDSGVFPILAVKAGRVSD-FNGKVV--GTISTTQLFIEPDFPEAHRLKEWFEKEGKN- 465
+A+ G VS F K TT+L + PD PE K+ G
Sbjct: 184 ----------VALWNGFVSKGFEDKATLQNVKGTTRLIVNPDVPEVIAFKDRLIGLGIQV 233
Query: 466 --TQSV-------SISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIV-YIKC 515
T +V S+ + L R +KT+SQ L E+ + VSA + +++
Sbjct: 234 PPTLTVLGGPSKPSMEEEFL---RMYPKKTISQ-----LFNSEEDGFFVVSAIVSGFVEG 285
Query: 516 DNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTG 571
+ + Y AC C++ V + G ++C CD+ V++ RY ++ ++ D TG
Sbjct: 286 EEWWYPAC-------KCHRSVTADS-GAYYCKGCDKHVIQMVPRYKIKLRVDDGTG 333
>gi|358347814|ref|XP_003637946.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
gi|358347930|ref|XP_003638003.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
gi|355503881|gb|AES85084.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
gi|355503938|gb|AES85141.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
Length = 566
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 104/398 (26%), Positives = 166/398 (41%), Gaps = 54/398 (13%)
Query: 219 IIPIAALNPYMGKWTIK--ARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
I P+AA+ GK IK RV + +NN D + H LLD G+I+ +
Sbjct: 5 ITPVAAI--VAGKINIKLRVRVVHVWTVSEFNNPNEDNSI-HMLLLDDKLGKIQASAKKH 61
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEI-FLDMTSMVQLCYEDDASIPRQ 335
+ + VE G Y + + + + ++ +D T ++ D A+IP
Sbjct: 62 LVPRIRSNVEEGSTYDIENVLVTKNDPKYQVTQHRFKLNLIDNTKFFKI---DAATIPLN 118
Query: 336 QFHFRPINDV-EGMENNSVVDLIGVVSYISPTASLMRK--NGTETQKRTLHLRDMSGRSV 392
F F P N++ E VVD+IG + L + NG ++ L L+D R V
Sbjct: 119 HFDFMPFNEILEAEREEKVVDVIG---QVVERDELKERDVNGRRSKIMDLTLQDSESRRV 175
Query: 393 ELTLWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNG--KVVGTISTTQLFIEPDF 449
TLW N+ + H S V I+ ++ ++ + G V T+L +E D
Sbjct: 176 HCTLWANYAERMNSFLAAHDPSSPV--IVLIQQCKLKKYQGIMGVSNAFFGTKLLLEGDL 233
Query: 450 PEAHRLKEWFEKEGKNTQ-SVSISRDSLSVGRADIRKTVSQIKDEGLGTKEK--PDWI-- 504
PEA K +G + Q S SIS+++ S TV + D+ L TK D I
Sbjct: 234 PEAIEFKSKI--DGGDVQVSQSISQNTTS--------TVVSLVDDMLQTKRMTIEDLIEA 283
Query: 505 ------TVSATIVYIKCD-NFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCD--QSVVE 555
V ATI I+ + ++ Y AC C +V GR +C +C+ ++ V
Sbjct: 284 TEQCQGIVLATICGIESEYSWYYQACT------KCAGRVRTVA-GRLYCGKCNTGRNAVP 336
Query: 556 CDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDL 593
R+ L Q+ D+TG T F + + +D+
Sbjct: 337 ---RFKLHVQVMDNTGSTSFILFDRNVSSYVNRTVQDM 371
>gi|402222340|gb|EJU02407.1| nucleic acid-binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 363
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 142/345 (41%), Gaps = 34/345 (9%)
Query: 267 GEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCY 326
GEI ++ D ++E GK+Y + L + F ++ L++ + + Y
Sbjct: 8 GEIDAVAWDKAVD-LSERLEIGKLYQIPNAKLVDSSDCFTRTNHWLQVQIHSNDKI---Y 63
Query: 327 E--DDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRK----NGTETQKR 380
E D I + FR IN +E ++ VDL+ ++ + M+K G E +
Sbjct: 64 ELQDSGRILCIFYDFRRINSLEWFNDSRHVDLVAIIVRLGQPIKGMKKFKDQEGNERELI 123
Query: 381 TLHLRDMSG-RSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTIS 439
T H+ G S E L F D Q + G ++ +K + + V
Sbjct: 124 TDHVDVYLGDNSGEFVLLAAF---DDYGPQFIGREG--EVITIKNALIDKYGNSVSLKTK 178
Query: 440 --TTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSI-----SRDSL--SVGRADI-RKTVSQ 489
TT+L E LKEWFE G ++ + S DS+ S A+I KT+ +
Sbjct: 179 EFTTELLFESGNHAHKVLKEWFESPGSIADTLCLMTGTYSADSVPDSWFTANIPTKTIKE 238
Query: 490 IKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKK--VMNNGDGR-WHC 546
I +G+G + V T+ + + Y ACP + CNKK V +G+ W C
Sbjct: 239 IFTDGIGAHGVRSQVKVRGTVSFYSDREYTYLACP----NPNCNKKAQVAESGNSTVWWC 294
Query: 547 DRCDQSVVECDYRYILQFQIQDHTGL-TWVTAFQECAEEIMGMSA 590
C + +Y L Q++D GL W+TAF E + G A
Sbjct: 295 THCKTVYLVPSEKYRLNMQMRDTMGLNNWITAFNGAMERLFGQYA 339
>gi|242051188|ref|XP_002463338.1| hypothetical protein SORBIDRAFT_02g042013 [Sorghum bicolor]
gi|241926715|gb|EER99859.1| hypothetical protein SORBIDRAFT_02g042013 [Sorghum bicolor]
Length = 520
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 89/389 (22%), Positives = 165/389 (42%), Gaps = 31/389 (7%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDL--LDSDGGEIRVTCFNAVAD 279
++ + P WTI ++ E R + DG + H DL +D G + V
Sbjct: 9 LSDIRPGQFHWTICVSISRMWEFR---GKSDDGDIKHLDLVIIDKKGTSMYVEIPPDSIP 65
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
Q++ GKI ++ + ++ A+ + + N + L+ +M+ + + P+ +
Sbjct: 66 ILKPQLKEGKIVVMKKFVVEQAKPEYRVVPNPYMLRLNKRTMITTVEPEPSMFPKVTYML 125
Query: 340 RPINDVEGMENNS--VVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLW 397
P++++E + ++ +D+IG ++ +S A+ GT +R + LRD++G ++ L L
Sbjct: 126 TPLSELEQYKGSTERFLDVIGQITQVSDIANFHTVAGTMQMRRKITLRDINGVAINLFLS 185
Query: 398 G----NFCNDDGLRL-QHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEA 452
G F D L Q +F +K G ++D + GT + + P
Sbjct: 186 GARAMEFDGDKVYNLGQETAVVAIFVGTLMKKG-LADQPSYLSGTSACRWYINDFQIPAI 244
Query: 453 HRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKD----EGLGTKEKPDWITVSA 508
E V IS ++ ++ + +KTV Q+KD E TK +
Sbjct: 245 QEYYNMLPSEVDAVDKVEIS-ETKTMQQHVQQKTVLQLKDMDPFEQTNTK-----FQCTV 298
Query: 509 TIVYIKCDN-FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQ 567
TI + + + Y+AC I CN + +GR+ C + D E RY L F
Sbjct: 299 TITKLSLNQGWYYSACKI------CNTRCY-YINGRYKCAKTDCPSNEAQDRYKLCFMAA 351
Query: 568 DHTGLTWVTAFQECAEEIMGMSAKDLYSL 596
D T AF + A++++G + L S+
Sbjct: 352 DETYELEFIAFDQKAQQLIGKPIQRLQSM 380
>gi|413948787|gb|AFW81436.1| hypothetical protein ZEAMMB73_509972 [Zea mays]
Length = 524
Score = 76.6 bits (187), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 78/350 (22%), Positives = 140/350 (40%), Gaps = 16/350 (4%)
Query: 244 LRHYNNQRGDGKVFHFD--LLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPA 301
+ + + + + + H D L+D +GG + +A F ++ G +Y VS +K A
Sbjct: 25 MWEFYDPQDESNLLHADMVLIDEEGGSAHAQIYPPLAAVFKPMIKEGNVYNVSYVQIKKA 84
Query: 302 QKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMEN--NSVVDLIGV 359
+ + + ND+ I + ++ E + P + P + + + + +D+IG
Sbjct: 85 NRMYKPVDNDIMIGFTKWTTIEELIEVPPAFPEIVYSLTPFDQLTTLVDIREYFIDVIGA 144
Query: 360 VSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFP 418
V+ IS A++ K T+T KR++ +++ S +E+ LWG +
Sbjct: 145 VTMISDVATIRTKMRQTQTAKRSVTIQNESCTPLEVVLWGGQATSFPADQISIAGQDSLQ 204
Query: 419 ILAVKAGRVSDFNGKVVGT-ISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLS 477
I+ + G T S+ + ++ P PEA L + + S + S +
Sbjct: 205 IIIFVGTLARSYAGTTSLTGGSSCKWYVNPQVPEATSLAASLQHKRSPIMSAAGSTQRVP 264
Query: 478 VGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDN-FCYTACPIMIGDRPCNKKV 536
K VS+IK EK +W+ T+ +K D + Y +C R C KK
Sbjct: 265 RISTAEHKKVSEIKHLHPFKHEKVEWL---VTVTVLKIDQLWWYESC------RKCLKKT 315
Query: 537 MNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM 586
+GD D V + RY L D G T F A+ I+
Sbjct: 316 KPHGDAYKCSDSGCGHVGPPNPRYRLLITAGDEIGETDFILFGRMAQRIV 365
>gi|348670089|gb|EGZ09911.1| hypothetical protein PHYSODRAFT_305275 [Phytophthora sojae]
Length = 441
Score = 76.3 bits (186), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 113/254 (44%), Gaps = 36/254 (14%)
Query: 221 PIAALNPYMG-KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
PI L+P +G +W + AR+ +R ++N G G +L DG
Sbjct: 5 PIRDLSPVLGVQWEVVARIAFLSPVRQWSNANGRGHNLAT-ILRGDG------------- 50
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
++L + G ++ A + F ++ EI L ++ V EDD SI + F
Sbjct: 51 ----------VFLFAGGRIRKAARGFGKPNHTYEIGLSSSASVT-PVEDDDSIEHVDYAF 99
Query: 340 RPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWG 398
I+D+ + ++ VD++ ++ + ++ RK+G + KR L L D S + TLW
Sbjct: 100 TTISDLAHADAHAQVDILAMIMDVGVLDKVVDRKDGVQV-KRELKLTDSSNVEIVCTLWN 158
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEW 458
F D H A + V++F G+ + T+S T + P+ P+ L+EW
Sbjct: 159 KFAEVDYTAALHQP-------YAFRQVMVNEFRGRSLSTLSYTMVVPNPNLPDVITLQEW 211
Query: 459 FEKEGKNTQSVSIS 472
F+ + + SV IS
Sbjct: 212 FD-DTRGEFSVPIS 224
>gi|302825612|ref|XP_002994408.1| hypothetical protein SELMODRAFT_432333 [Selaginella moellendorffii]
gi|300137673|gb|EFJ04528.1| hypothetical protein SELMODRAFT_432333 [Selaginella moellendorffii]
Length = 203
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 96/247 (38%), Gaps = 50/247 (20%)
Query: 325 CYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHL 384
C EDD IP + + D + + +D+IG
Sbjct: 5 CVEDDLRIPNVVLNRMSVLDASKLGQETFIDVIG-------------------------- 38
Query: 385 RDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLF 444
G S+++ LW + D+G ++ G P + +K R+SD+NGK + + L
Sbjct: 39 ----GHSIDMCLWDSKAEDEGSEIEEKPGRGQKPTVCLKGSRISDYNGKSISVTGGSTLL 94
Query: 445 IEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWI 504
++P+ + L EW T V ++ S +A I GTK + +
Sbjct: 95 VDPELEDVSWLCEWMVASYNTTIFVHVTNSS---SKAVIS-----------GTKTVSEML 140
Query: 505 TVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQF 564
+++ +K +F Y AC ++ C KKV + W C CD + ++Y L
Sbjct: 141 SIN-----LKTGDFYYPACVKVVNGSQCGKKVTQVSESMWQC-TCDTDSGDIHFKYALHL 194
Query: 565 QIQDHTG 571
I D TG
Sbjct: 195 CILDSTG 201
>gi|116785534|gb|ABK23763.1| unknown [Picea sitchensis]
Length = 67
Score = 75.5 bits (184), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/64 (51%), Positives = 43/64 (67%)
Query: 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAV 277
R+ P+ +LN Y G WTIK RVT KG LR + N RG+G VF+ +L D DG +I+ T F
Sbjct: 4 RVYPLVSLNRYQGNWTIKVRVTNKGPLRTFRNARGEGSVFNVELTDEDGTQIQATMFKEA 63
Query: 278 ADQF 281
AD+F
Sbjct: 64 ADKF 67
>gi|116309010|emb|CAH66127.1| OSIGBa0135L04.1 [Oryza sativa Indica Group]
Length = 502
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 105/237 (44%), Gaps = 14/237 (5%)
Query: 234 IKARVTAK-GELRHYNNQRGDGKVFHFDL--LDSDGGEIRVTCFNAVADQFYHQVEAGKI 290
+ R+ A+ L + + G G +FH DL LD G I + D ++ K+
Sbjct: 14 LNTRILARVSRLWDFCDLNGSGNIFHTDLVLLDQMGNSIHAQIYPPAIDSLRPLLKEQKV 73
Query: 291 YLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMEN 350
Y + +++ A + + + N L I + + E A P F P +D+ + +
Sbjct: 74 YYIDSFTVRYANRTYRPVDNSLMIVFSKWTTFEEYIEPAADFPGITFSLTPFSDIPHLVD 133
Query: 351 NSV--VDLIGVVSYI-SPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLR 407
++ VD++GV++ + SPT + ++ KRT+ + D S ++ +TLWG D
Sbjct: 134 KTIFYVDVMGVITEVGSPTVVRPKSRNADSLKRTIQICDASNSTMPITLWGE--RADAFD 191
Query: 408 LQHMCDSGVF--PILAVKAGRVSDFNG---KVVGTISTTQLFIEPDFPEAHRLKEWF 459
+ ++G ++ V D+ G V G+ S + ++ D PE LKE F
Sbjct: 192 ANSVYNAGQTQAQVIVFVGTLVKDYTGLGLTVTGS-SPCKWYLNLDIPEVLELKESF 247
>gi|440301626|gb|ELP94012.1| replication factor A 1, rfa1, putative [Entamoeba invadens IP1]
Length = 460
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 98/207 (47%), Gaps = 14/207 (6%)
Query: 194 QAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGD 253
QAP++++ ++ V ++I P A L K TIK RV +K + Y
Sbjct: 122 QAPHVRAGVPTSHSAAVPADLSKAKITPFAMLTAMQNKSTIKGRVISKQDKFKY----AK 177
Query: 254 GKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLK-PAQKNFNHLHN-D 311
G +F+F L D +GGE+R T FN + D Y ++ G Y +S+G K P KN+ D
Sbjct: 178 GNLFNFVLQDKEGGELRATAFNDMCDALYDTIQVGSTYYISKGEFKVPTNKNYRSAKMID 237
Query: 312 LEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMR 371
+++ + + VQ ++ +I I+D+ +S+ D+ GV+ + L
Sbjct: 238 VDMVVGRYTTVQKAEDELPAIS----SITAISDLLTSPVDSLYDICGVLVQVKDEDHL-- 291
Query: 372 KNGTETQKRTLHLRDMSGRSVELTLWG 398
KN + +R++ + D + V + WG
Sbjct: 292 KN--DKIRRSILVADQTKHVVSINFWG 316
>gi|391326949|ref|XP_003737971.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
Length = 290
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 108/228 (47%), Gaps = 14/228 (6%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
+R + L Y G ++ RVT+K ++ ++ +GK+F F L+ + I V
Sbjct: 38 TRFLKDVVLTRYGG--VLEGRVTSKTPIKEWSKNGKEGKLFSF-LMADETARISVIVSGD 94
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
D+ + ++ Y ++ KP +F+ ++ E+ L S ++ DD IP+ Q
Sbjct: 95 KTDEVFSTIQVNHCYRITGFKPKPVNPHFSSTDHECEVTLSKISKIKEIERDD--IPQTQ 152
Query: 337 FHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTL 396
I + +E N ++DL ++ + P ++ ++G+ +K+T L D S + V L L
Sbjct: 153 SLCSSIASILNIEKNCLIDLTAILFDLLPVQNITCRDGSIQKKQTALLVDDSKKIVSLDL 212
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVV-GTISTTQL 443
W ++ + D P+ ++K+ V +F GK+V G+++ T
Sbjct: 213 WNK-------HVEKLTDMEGCPV-SIKSITVKEFRGKIVLGSMANTTF 252
>gi|12322096|gb|AAG51090.1|AC027032_10 hypothetical protein [Arabidopsis thaliana]
Length = 567
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 94/438 (21%), Positives = 176/438 (40%), Gaps = 64/438 (14%)
Query: 225 LNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQ 284
+ PY W ++ ++ + ++ +N R + + D G ++ T + +F H+
Sbjct: 11 VRPYKNAWRVQVKILHSWK-QYTSNTR---ETIELVISDEHGKKMHATVKKELVSKFVHK 66
Query: 285 VEAGKIYLVSRGSLKPAQKNF---NHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF---- 337
+ G+ + L A F NHL+ ++ + + V C AS+ F
Sbjct: 67 LIVGEWVFIEIFGLTYASGQFRPTNHLY---KMAFQVRTEVMGC----ASVSDSNFLTLA 119
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLW 397
F I E + + +VD IG + + L + N T K +RD +++TLW
Sbjct: 120 SFSKIQSGE-LNPHMLVDAIGQIITVGELEEL-KANNKRTTKIDFEIRDQMDERMQVTLW 177
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKE 457
G + + V+ G+ + + + +Q+ + PDFPE H +
Sbjct: 178 GTYAQE------------VYRACQESEGKNTASVKSLSNSFDASQVHVNPDFPEVHDFSQ 225
Query: 458 WFEKEGKNTQSVSISR------DSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIV 511
+G ++ + R + ++V R D + + L + E + V TI
Sbjct: 226 TLLNDG----AICVFRARVPRFEMVAVKRTDYSEYTRNTIENLLSSTEVGK-VRVLCTIY 280
Query: 512 YIKCD-NFCYTACPIMIGDRPCNKKVMN--------NGDG---RWHCDRCDQSVVECDYR 559
+ D + Y +C + CNKKV + N G R+ CD C V R
Sbjct: 281 AVDTDWAWYYISC------KTCNKKVNHIHAGVNGVNNKGKKPRFWCDTCTSVVTNVVSR 334
Query: 560 YILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQND--EKFGEVVRNATFTK 617
Y++ ++ D TG + F EI+G SA +++ VD+ D E + V+N
Sbjct: 335 YMIYAKVMDSTGEAKLLLFDSICSEIIGESAASVFN-GSVDEIDDPEDLPDSVKNLIGKT 393
Query: 618 YLFKLKVKEETFSDEQRV 635
+LF + V+++ D + +
Sbjct: 394 FLFLVCVEKDNILDGKEI 411
>gi|414877599|tpg|DAA54730.1| TPA: hypothetical protein ZEAMMB73_628014 [Zea mays]
Length = 495
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 87/385 (22%), Positives = 162/385 (42%), Gaps = 27/385 (7%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL--DSDGGEIRVTCFNA 276
II + L+P I+ RV K E R N DG + H +L+ D G I A
Sbjct: 6 IIYMTELHPQSTNVVIRVRVIRKWEFRGATN---DGPLQHINLVLADEQGTSIHAEIAAA 62
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
+A +E K+Y + R + P++ F + N+ I + + ++ + PR
Sbjct: 63 LAVDKGSLIEIEKVYELKRFRVTPSRNYFKPVDNNFMIQFTLYTQAKVVKDPPQMFPRYI 122
Query: 337 FHFRPINDVEGMENNS--VVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVEL 394
+ ++E +N ++D++G+++ I P + N T R +++++ S S+++
Sbjct: 123 YKLTSFENIEDNIDNRTYLIDVLGMLTQIDPPHLIGYNNSTII--RDIYIKNASDMSLKI 180
Query: 395 TLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSD-FNGK--VVGTISTTQLFIEPDFPE 451
TLWGN ++ + + S PI+ + G ++ F G+ + GT +++ F P PE
Sbjct: 181 TLWGNQASNFSISDVYNQSSNQ-PIVILLVGFLAKRFKGQPYLSGTTASSWYF-NPGIPE 238
Query: 452 AHRLKEWFEKEGKNTQSVSISRDSLSVGRAD--IRKTVSQIKDEGLGTKEKPDWITVSAT 509
A + + +++ + V + KTV ++ D P+ + T
Sbjct: 239 AQTYYNRLQNNDLQLIQPTAAKEEIQVSQPPNLEHKTVEELLDID-PDMFPPEGYRCTVT 297
Query: 510 IVYI-KCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQD 568
I I + + Y +C C+K G +HC C + ++RY L F D
Sbjct: 298 ISRIVQNSKWWYPSC------SRCHKSSSQTSTG-YHCTSC--GCTDINFRYKLSFIATD 348
Query: 569 HTGLTWVTAFQECAEEIMGMSAKDL 593
T F A +I+G +L
Sbjct: 349 GTCEAEFFCFDSIARKIVGKPCDNL 373
>gi|414877600|tpg|DAA54731.1| TPA: hypothetical protein ZEAMMB73_628014, partial [Zea mays]
Length = 489
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 87/385 (22%), Positives = 162/385 (42%), Gaps = 27/385 (7%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL--DSDGGEIRVTCFNA 276
II + L+P I+ RV K E R N DG + H +L+ D G I A
Sbjct: 6 IIYMTELHPQSTNVVIRVRVIRKWEFRGATN---DGPLQHINLVLADEQGTSIHAEIAAA 62
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
+A +E K+Y + R + P++ F + N+ I + + ++ + PR
Sbjct: 63 LAVDKGSLIEIEKVYELKRFRVTPSRNYFKPVDNNFMIQFTLYTQAKVVKDPPQMFPRYI 122
Query: 337 FHFRPINDVEGMENNS--VVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVEL 394
+ ++E +N ++D++G+++ I P + N T R +++++ S S+++
Sbjct: 123 YKLTSFENIEDNIDNRTYLIDVLGMLTQIDPPHLIGYNNSTII--RDIYIKNASDMSLKI 180
Query: 395 TLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSD-FNGK--VVGTISTTQLFIEPDFPE 451
TLWGN ++ + + S PI+ + G ++ F G+ + GT +++ F P PE
Sbjct: 181 TLWGNQASNFSISDVYNQSSNQ-PIVILLVGFLAKRFKGQPYLSGTTASSWYF-NPGIPE 238
Query: 452 AHRLKEWFEKEGKNTQSVSISRDSLSVGRAD--IRKTVSQIKDEGLGTKEKPDWITVSAT 509
A + + +++ + V + KTV ++ D P+ + T
Sbjct: 239 AQTYYNRLQNNDLQLIQPTAAKEEIQVSQPPNLEHKTVEELLDID-PDMFPPEGYRCTVT 297
Query: 510 IVYI-KCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQD 568
I I + + Y +C C+K G +HC C + ++RY L F D
Sbjct: 298 ISRIVQNSKWWYPSC------SRCHKSSSQTSTG-YHCTSC--GCTDINFRYKLSFIATD 348
Query: 569 HTGLTWVTAFQECAEEIMGMSAKDL 593
T F A +I+G +L
Sbjct: 349 GTCEAEFFCFDSIARKIVGKPCDNL 373
>gi|226506010|ref|NP_001152059.1| retrotransposon protein [Zea mays]
gi|195652219|gb|ACG45577.1| retrotransposon protein [Zea mays]
Length = 525
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 84/385 (21%), Positives = 159/385 (41%), Gaps = 27/385 (7%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL--DSDGGEIRVTCFNAVA 278
P+A L+P I+ RV K E R N DG + H +L+ D G I A+A
Sbjct: 5 PVAELHPQSTNVVIRVRVIRKWEFRGATN---DGPLQHINLVLADEQGTPIHAEIAAALA 61
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
+E K+Y + R + P++ F + N+ I + + ++ + PR +
Sbjct: 62 VDKGSLIEIEKVYELKRFRVTPSRNYFKPVDNNFMIQFTLYTQAKVVKDPPQVFPRYIYK 121
Query: 339 FRPINDVEGMENNS--VVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTL 396
++E +N ++D++G+++ I+P + N T R + +++ S S+++TL
Sbjct: 122 LTCFENIEDNIDNRTYLIDVLGMLTQINPPHLIGYNNSTII--RDIFIKNTSDMSLKITL 179
Query: 397 WGNFCNDDGLRLQHM-CDSGVFPILAVKAGRVSD-FNGK-VVGTISTTQLFIEPDFPEAH 453
WGN G + + S PI+ + G ++ F G+ + + + + + P PEA
Sbjct: 180 WGN--QASGFSINDVYSQSNNQPIVILLVGFLAKRFKGQPYLSSTTASSWYFNPGIPEAQ 237
Query: 454 RLKEWFEKEGKNTQSVSISRDSLSVGRAD--IRKTVSQIKDEGLGTKEKPDWITVSATIV 511
+ + + + + + + KTV ++ D P+ + TI
Sbjct: 238 TYYNRLQNNDLQLIQPTAAEEEILLSQPPNLEHKTVEELLDID-PDMFPPEGYRCTVTIS 296
Query: 512 YI-KCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHT 570
I + + Y +C C+K G +HC C + ++RY L F D T
Sbjct: 297 RIVENSKWWYPSC------SRCHKSSSQTSTG-YHCTSC--GCTDINFRYKLSFIATDGT 347
Query: 571 GLTWVTAFQECAEEIMGMSAKDLYS 595
F A +I+G +L +
Sbjct: 348 CEAEFFCFDSIARKIVGKPCDNLVT 372
>gi|330798256|ref|XP_003287170.1| hypothetical protein DICPUDRAFT_94345 [Dictyostelium purpureum]
gi|325082822|gb|EGC36292.1| hypothetical protein DICPUDRAFT_94345 [Dictyostelium purpureum]
Length = 650
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 125/274 (45%), Gaps = 33/274 (12%)
Query: 175 SNPRPEFSRPYASNYARTPQ-----APYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYM 229
S PRP + N P+ P+ Q Y +S + S + IA +N +
Sbjct: 153 SAPRPNLTSTPTKNNNFIPKPSQGSLPF-QPQQKYTKPQPDSESVLRSHVSDIADINEHS 211
Query: 230 GKWTIKARVTAKGELRHYNNQRGD--GKVFHFDLLDSDGGEIRVTCFNAVA------DQF 281
+ TIKA V + + +N + GD G++F L DS G I+ TCF++ + D
Sbjct: 212 KEITIKAMVMERMPRKSWN-KGGDNSGELFSVILQDSTGS-IKATCFSSKSNPLPAFDDL 269
Query: 282 YHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEI-FLDMTSMVQLCYEDDASIPRQQFHFR 340
Y +E K++ + K A K+F+ L +D EI F T++V + E D + FR
Sbjct: 270 YEMLEKKKVFKIQGFYAKKANKDFSRLPHDYEITFNASTAIVPVDEEMDIF-----YDFR 324
Query: 341 PINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNF 400
I D+ +E + D+IGVVS + KN + K ++++ D +G +E+ W
Sbjct: 325 NIEDLSNVETGTTCDVIGVVSDCNLNQRFTSKNNKQLVKSSININDTTG-IIEVIFWNEA 383
Query: 401 CNDDGLRLQHMCDSGVFPILAVKAGRV-SDFNGK 433
+ D G I+A+K +V ++FN K
Sbjct: 384 ADID-------VKDG--DIIAIKNAKVNTNFNNK 408
>gi|77555321|gb|ABA98117.1| hypothetical protein LOC_Os12g26850 [Oryza sativa Japonica Group]
Length = 1201
Score = 73.6 bits (179), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 116/238 (48%), Gaps = 18/238 (7%)
Query: 234 IKARVTAKGELRHYNNQRGDGKVFHFDL--LDSDGGEIRVTCFNAVADQFYHQVEAGKIY 291
IKARV+ + N+ R K+ H DL LD G I + V ++ GK+Y
Sbjct: 703 IKARVSRLWDFHDLNDDR---KIVHTDLVLLDETGNSIHAQMYQHVIVNLKPLLQEGKVY 759
Query: 292 LVSRGSLKPAQKNFNHL-HNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMEN 350
+ +++ A + + + H+ + +F T++ + C + A P F P DV + +
Sbjct: 760 YIDSFTVRYANRTYRPVAHSQMILFTKWTTLEE-CVDVPADFPAITFSLTPFGDVPSLVD 818
Query: 351 NSV--VDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLR 407
++ VD++GV++ I T+++ + T++ KRTL + D S ++ LTLWG
Sbjct: 819 KNIFYVDIMGVITEIGTTSTVRPQSRNTDSLKRTLQICDASNSTLPLTLWGERAT--AFD 876
Query: 408 LQHMCDSGVF-PILAVKAGR-VSDFNG---KVVGTISTTQLFIEPDFPEAHRLKEWFE 460
+++ ++G P + V G V ++ G + G+ S + +I + PE LKE ++
Sbjct: 877 AENIYNAGQRQPQVVVFVGTLVKNYKGLGLTLTGS-SPCKWYINLEIPEVVELKERYK 933
>gi|297613121|ref|NP_001066722.2| Os12g0454300 [Oryza sativa Japonica Group]
gi|255670281|dbj|BAF29741.2| Os12g0454300 [Oryza sativa Japonica Group]
Length = 1051
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 87/171 (50%), Gaps = 10/171 (5%)
Query: 234 IKARVTAKGELRHYNNQRGDGKVFHFDL--LDSDGGEIRVTCFNAVADQFYHQVEAGKIY 291
IKARV+ + N+ R K+ H DL LD G I + V ++ GK+Y
Sbjct: 553 IKARVSRLWDFHDLNDDR---KIVHTDLVLLDETGNSIHAQMYQHVIVNLKPLLQEGKVY 609
Query: 292 LVSRGSLKPAQKNFNHL-HNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMEN 350
+ +++ A + + + H+ + +F T++ + C + A P F P DV + +
Sbjct: 610 YIDSFTVRYANRTYRPVAHSQMILFTKWTTLEE-CVDVPADFPAITFSLTPFGDVPSLVD 668
Query: 351 NSV--VDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWG 398
++ VD++GV++ I T+++ + T++ KRTL + D S ++ LTLWG
Sbjct: 669 KNIFYVDIMGVITEIGTTSTVRPQSRNTDSLKRTLQICDASNSTLPLTLWG 719
>gi|215687058|dbj|BAG90904.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215694034|dbj|BAG89233.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 192
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 8/183 (4%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDL--LDSDGGEIRVTCFNAVAD 279
I+ L P I ARV+ L H+ + D + H DL LD G V + +
Sbjct: 6 ISQLYPGDSDKKILARVS---RLWHFRDLNDDTNILHTDLVLLDEVGNSTHVQMYRGAIE 62
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
+ G +Y + ++K A + + + ND I + ++ C + A P F
Sbjct: 63 VLKPLIHEGNVYYIESFTVKDANRTYRPVSNDFMILFSKWTTLEECIDIPADFPAITFSL 122
Query: 340 RPINDVEGMENNSV--VDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTL 396
P ++ + + ++ VD++GV++ IS T+++ R ++ KRTL + D S ++ +TL
Sbjct: 123 TPFQEIPSLVDKNIFYVDIMGVITEISSTSTVRPRSRDADSLKRTLQICDASNSTLPVTL 182
Query: 397 WGN 399
WG+
Sbjct: 183 WGD 185
>gi|357484639|ref|XP_003612607.1| Replication protein A1-like protein [Medicago truncatula]
gi|355513942|gb|AES95565.1| Replication protein A1-like protein [Medicago truncatula]
Length = 147
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 61/112 (54%), Gaps = 14/112 (12%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQV D+KLV Q QQ + + +R+VLSDG QQGML Q+N LV SG LQ GS+V
Sbjct: 35 PVLQVFDMKLV----QSQQNNTTEPYRLVLSDGLYYQQGMLVVQKNHLVHSGRLQKGSIV 90
Query: 62 RLTKFTC-NVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTG 112
+L+ F C +V+ N+ + C I +Q ++ G V G
Sbjct: 91 KLSHFYCDDVLNNKRCT---------NSCWSISTAENSQYLNNGSHAGGVNG 133
>gi|391326557|ref|XP_003737779.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Metaseiulus occidentalis]
Length = 131
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 534 KKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDL 593
KKV + GDG + C++C S +R IL+ + D T W TAF E AE+I+G++A L
Sbjct: 2 KKVHDQGDGTFSCEKCASSGPNYKWRLILKMAVADPTKQLWCTAFNEKAEQILGVTAATL 61
Query: 594 YSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRF 653
Y + N ++ + + F ++ FK + + E F DE+R ++ VV+ + S +++
Sbjct: 62 GD--YSENNPDEMDRIFSASMFKQFHFKFRGRMEVFQDERRFQTAVVEVKEIKPSEDSQH 119
Query: 654 IL 655
++
Sbjct: 120 LV 121
>gi|449692091|ref|XP_002168845.2| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Hydra magnipapillata]
Length = 83
Score = 72.0 bits (175), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/80 (42%), Positives = 52/80 (65%), Gaps = 5/80 (6%)
Query: 485 KTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRW 544
KT+ QIKDEGLG EKPD+ V A +V+ + +N Y ACP CNKKV+ + +G++
Sbjct: 7 KTLGQIKDEGLGMGEKPDYFNVRAFVVFYRKENCMYQACP----GADCNKKVIED-NGQF 61
Query: 545 HCDRCDQSVVECDYRYILQF 564
C++CD++ + YR +L +
Sbjct: 62 RCEKCDRTYPDFKYRMVLSY 81
>gi|357498253|ref|XP_003619415.1| Coiled-coil domain-containing protein [Medicago truncatula]
gi|355494430|gb|AES75633.1| Coiled-coil domain-containing protein [Medicago truncatula]
Length = 705
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 107/217 (49%), Gaps = 18/217 (8%)
Query: 261 LLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTS 320
L+D +G +I T + F H++ GK+Y +S ++ + H+ ++ M +
Sbjct: 42 LIDQNGVKIHATIPKQLMYLFQHKLIEGKVYKLSNFTVLLNSGAYRTTHHTYKLIFQMKT 101
Query: 321 MVQLCYEDDAS-IPRQQFHFRPINDVEG--MENNSVVDLIGVVSYISPTASLMRKNGTET 377
V+ ++ + S IP I+ + + +VD+IG+++ IS +R +G T
Sbjct: 102 KVEESHDYEISLIPNHGLTLTDISQITSRTQDYEYLVDVIGLMTGISAEREFVR-DGKLT 160
Query: 378 QKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGK---- 433
+ + L D SG+ E TL+GN+ D+ +L G P++ ++ +V F GK
Sbjct: 161 KILVIELTDHSGKC-ECTLFGNYV-DELHKLMSKAVEGS-PVIVIQFAKVKIFRGKASIQ 217
Query: 434 -VVGTISTTQLFIEPDFPEAHRLKE----WFEKEGKN 465
VVG STT++++ P FPEA + KE WF +N
Sbjct: 218 NVVG--STTRIYLNPSFPEALKFKEGKEVWFTFSKQN 252
>gi|348685631|gb|EGZ25446.1| hypothetical protein PHYSODRAFT_479463 [Phytophthora sojae]
Length = 263
Score = 72.0 bits (175), Expect = 1e-09, Method: Composition-based stats.
Identities = 64/255 (25%), Positives = 107/255 (41%), Gaps = 32/255 (12%)
Query: 216 PSRIIPIAALNPYM-GKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCF 274
P + IA NP + W+ R+ A+ +R + + R G++F + D D +RVT F
Sbjct: 16 PLPVFTIADFNPEIRAPWSFIGRILARSPVRTFKSWRASGRLFRVHVTDRDDATLRVTVF 75
Query: 275 NAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASI-- 332
N A++F+ + G + S G + A +F +S ++L + DA+I
Sbjct: 76 NEGAERFFDVLSPGAVCSFSNGRITTAN----------SVFAPPSSPIELSFGGDANIHR 125
Query: 333 -------PRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLR 385
P F + + D+ + + G+V + P + + G +T KR L
Sbjct: 126 VTDGPDYPEPAFAYIRLADLPA----ATPTVSGIVVDVGPLRDITTRAGRKTLKREFLLV 181
Query: 386 DMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDF-NGKVVGTISTTQLF 444
D S V T WG D LQ PIL ++ G++SD+ N + V + L
Sbjct: 182 DDSNVDVVCTAWGQ----DADELQDSLQG--HPIL-IQNGQISDYMNIRSVDIGVRSTLL 234
Query: 445 IEPDFPEAHRLKEWF 459
P + L+ WF
Sbjct: 235 HHPATSRSADLQRWF 249
>gi|196018182|ref|XP_002118759.1| hypothetical protein TRIADDRAFT_62772 [Trichoplax adhaerens]
gi|190578288|gb|EDV18754.1| hypothetical protein TRIADDRAFT_62772 [Trichoplax adhaerens]
Length = 218
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 48/64 (75%), Gaps = 3/64 (4%)
Query: 201 PSMYANRGLVGKSEVPSRII-PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHF 259
P+++ + LV KSE +RI+ PI++L PY +WTI+ RVT+K E+R ++N RG+GK+F
Sbjct: 155 PTIHPQQNLVDKSE--NRIVFPISSLTPYQNRWTIRTRVTSKSEIRKWSNSRGEGKLFSV 212
Query: 260 DLLD 263
DL+D
Sbjct: 213 DLID 216
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 62/100 (62%), Gaps = 9/100 (9%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+ QV ++ + Q ++ +R+R+VLSDG + MLATQ N+ VTSG L ++
Sbjct: 20 PIFQVAAVRKI-----QNEKLSVERYRIVLSDGIHAYSSVMLATQLNQRVTSGELDAKAI 74
Query: 61 VRLTKFTCNVIQ-NRMIVIVMDLDVII--DKCDPIGKPVP 97
++L +TCN++Q R +++++DL V+ + D IG+P P
Sbjct: 75 IKLNNYTCNIVQETRKVLVILDLTVLTCGSETDIIGQPKP 114
>gi|413917703|gb|AFW57635.1| hypothetical protein ZEAMMB73_449704 [Zea mays]
Length = 459
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 118/248 (47%), Gaps = 22/248 (8%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSD--------GGEIRVT 272
PI LNP I+ RV K E R N DG + H +L+ +D G I
Sbjct: 5 PITELNPQKINVVIRVRVIRKWEFRGATN---DGPLRHINLILADEQVIIFFKGTAIHAE 61
Query: 273 CFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASI 332
A+A + ++ K+Y + + P++ F +HN+L I + + ++ +
Sbjct: 62 IPAALAIEKGSLIQIDKVYEIRHFRVMPSRGYFKPVHNNLMIQFTLYTQAKVVNDPPHIF 121
Query: 333 PRQQFHFRPINDVE-GMEN-NSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGR 390
P ++ VE ++N N ++D+IG+++ IS + N + R + ++D+S
Sbjct: 122 PIYIYNLTSFEKVEENVDNRNYLIDVIGMLTQISAPHVVGYNNSSIV--RDIFIKDISDA 179
Query: 391 SVELTLWGNFCNDDGLRLQHMC-DSGVFPILAVKAGRVS-DFNGK--VVGTISTTQLFIE 446
S+++TLWG+ G + ++C +S PI+ + G ++ F G+ + GT +TT F
Sbjct: 180 SLKITLWGD--QASGFSINNVCNESNNKPIVIMFVGCLAKQFKGQSYLSGTTATTWYF-N 236
Query: 447 PDFPEAHR 454
P+ PEA
Sbjct: 237 PNIPEAQE 244
>gi|195572615|ref|XP_002104291.1| GD20884 [Drosophila simulans]
gi|194200218|gb|EDX13794.1| GD20884 [Drosophila simulans]
Length = 268
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 108/251 (43%), Gaps = 29/251 (11%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI +L P + +IKARV K E+ ++ G V+ LLD + GEI F
Sbjct: 40 IQPICSLTPGIYSSSIKARVIWKSEITQWSTGTKTGIVYIMHLLD-ESGEITGIVFADYD 98
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQL--CYEDDASIPRQQ 336
+ FY Q++ G +Y +S ++ A ++ N ++F +++QL C IPR++
Sbjct: 99 NGFYDQIQPGLVYHISGFEVEKAISSYKVSDNPYQLFFRPNTVLQLSAC----GQIPREK 154
Query: 337 FHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTL 396
++F P+ V + VD IG+ + + L + G R + L D V L L
Sbjct: 155 YNFLPLLKVSSKADEDPVDAIGICTEV---GRLEERGGYFI--REILLVDPDNHPVMLNL 209
Query: 397 WG----NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTIS-TTQLFIEPDFPE 451
W NF ++ VK R N ++ S T + I PD P+
Sbjct: 210 WQKEAVNFVGQPT------------DVIVVKGARARFHNNEMKLNASWYTNVQINPDIPD 257
Query: 452 AHRLKEWFEKE 462
A L W+ +
Sbjct: 258 ATDLLAWYNNQ 268
>gi|413917541|gb|AFW57473.1| retrotransposon protein [Zea mays]
Length = 581
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 82/384 (21%), Positives = 160/384 (41%), Gaps = 25/384 (6%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL--DSDGGEIRVTCFNAVA 278
P+A L+P I+ RV K E R N DG + H +L+ D G I A+A
Sbjct: 48 PVAELHPQSTNVVIRVRVIRKWEFRGATN---DGPLQHINLVLADEQGTPIHAEIAAALA 104
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
+E K+Y + R + P++ F + N+ I + + ++ + PR +
Sbjct: 105 VDKGSIIEIEKVYELKRFRVTPSRNYFKPVDNNFMIQFTLYTQAKVVKDPPQVFPRYIYK 164
Query: 339 FRPINDVEGMENNS--VVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTL 396
++E +N ++D++G+++ I+P + N T R + +++ S S+++TL
Sbjct: 165 LTCFENIEDSIDNRTYLIDVLGMLTQINPPHPVGYNNSTII--RDIFIKNTSDMSLKITL 222
Query: 397 WGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSD-FNGK-VVGTISTTQLFIEPDFPEAHR 454
WGN + + + S PI+ + G ++ F G+ + + + + + P PEA
Sbjct: 223 WGNQASSFSISDVYN-QSNKQPIVILLVGFLAKRFKGQPYLSSTAASSWYFNPVIPEAQT 281
Query: 455 LKEWFEKEGKNTQSVSISRDSLSVGRAD--IRKTVSQIKDEGLGTKEKPDWITVSATIVY 512
+ + + + + + + +KTV ++ + P+ + TI
Sbjct: 282 YYNRLQNNDLQLIQPTAAEEEILLSQPPNLEQKTVEELLNID-PDMFPPEGYRCTVTISR 340
Query: 513 I-KCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTG 571
I + + Y +C C+K G +HC C + ++RY L F D T
Sbjct: 341 IVQNSKWWYPSC------SRCHKSSSQTSTG-YHCTSC--GCTDINFRYKLSFIATDGTC 391
Query: 572 LTWVTAFQECAEEIMGMSAKDLYS 595
F A +I+G +L +
Sbjct: 392 EAEFFCFDNIARKIVGKPCDNLVT 415
>gi|413952523|gb|AFW85172.1| hypothetical protein ZEAMMB73_007991 [Zea mays]
Length = 504
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 83/393 (21%), Positives = 163/393 (41%), Gaps = 43/393 (10%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL--DSDGGEIRVTCFNAVA 278
PIA L+P I+ R+ K E R N DG + H +L+ D G I A+
Sbjct: 5 PIAELDPRSTNAAIRVRIIRKWEFRGATN---DGPLRHVNLILADEQGTTIHAEIQAALV 61
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
++ K+Y + R + P++ + + N + I + + ++ + + PR +
Sbjct: 62 ADKDSLIQIDKVYELKRFRVAPSRNYYKPVDNSMMIQFTLYTQAKVVKDPPPNFPRYAYK 121
Query: 339 FRPINDVEGMENNS--VVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTL 396
D+ +N ++D++G+++ I + N R + L+D++ S ++TL
Sbjct: 122 LTSFEDISDNVDNKTYLIDVLGILTEIGSLHHVGYNNSNII--RDIFLKDINNASTKVTL 179
Query: 397 WGNFCNDDGLRLQHMCDSG-VFPILAVKAGRVSD-FNGKV-VGTISTTQLFIEPDFPEAH 453
WG+ + ++CD P++ + G ++ F G+ + + + PD PEA
Sbjct: 180 WGH--QASSFSVDNICDENDNKPVVILFVGCLAKRFKGEAYLSATAACTWYFNPDIPEA- 236
Query: 454 RLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLG--TKEKPDW-------- 503
+ + + NT+ + + R + +T I+D+ + + PD
Sbjct: 237 ---QMYYNKLLNTK-LHMIRPQATAEELQASQT-PNIEDKTIEELLQLDPDMFPEQGFRC 291
Query: 504 -ITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYIL 562
+T+S ++ + + +C CNK G + C C+ + E ++RY L
Sbjct: 292 TVTISR---LVQNGRWWFPSC------IKCNKSSSQTSTG-YQCTSCNGT--ETEFRYKL 339
Query: 563 QFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYS 595
F D T F A I+G S + L+S
Sbjct: 340 SFIATDGTSEAEFFCFDTIARRIVGKSCQTLFS 372
>gi|77552149|gb|ABA94946.1| hypothetical protein LOC_Os11g41180 [Oryza sativa Japonica Group]
Length = 800
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 91/388 (23%), Positives = 160/388 (41%), Gaps = 73/388 (18%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYN----NQRGDGKVFHFDLLDSDGGEIRVTCFNAV 277
I AL P +W IK +V +R ++ + H +LD++G I V+ +
Sbjct: 7 ITALTPKNDRWRIKVKV-----IRLWDAVNPTMVDEFYGIHMIVLDAEGNSIHVSISKQL 61
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
A+ F +++ IY + K + L N+L+I ++V+
Sbjct: 62 ANHFRPKIKINSIYTFKNFKVMEHDK-YRVLKNNLKILFYHDTIVK-------------- 106
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGR-----SV 392
E +D+IG++S + P M T +++R ++R++ V
Sbjct: 107 -----------ETCLYLDVIGLLSGMKPIEQRMLGKNT-SRERVCNMREIELLLLEGEKV 154
Query: 393 ELTLWG----NFCNDDGLRLQHMCDSGVFP---ILAVKAGRVSDFNGKVVGTISTTQLFI 445
++TLWG N +DD L Q VF +L + ++ F G S+T++F+
Sbjct: 155 KITLWGDILANMVDDDLLGKQ-----TVFIATGLLVKEYEKLLSF-----GVTSSTEVFL 204
Query: 446 EPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADI-----RKTVSQIKDEGLGTKEK 500
+ + P + + E I D+ + G + RKT+ +I + ++
Sbjct: 205 DMEIPASMEILSRHNAEK--VLPTMIEVDASTQGTIEEQMFYNRKTLKEITELRYSNIQQ 262
Query: 501 PDWI-TVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYR 559
++I TV A I IK N+ Y +C C + +N + C+ C + V R
Sbjct: 263 KEFICTVKAKIEEIKSRNWWYMSCDKCF----CGTRKESNV---YICNSCGKEAVNPKPR 315
Query: 560 YILQFQIQDHTGLTWVTAFQECAEEIMG 587
Y++ +I DHT T T F E AE I G
Sbjct: 316 YVINLEISDHTTRTTCTIFNEEAERIFG 343
>gi|413923515|gb|AFW63447.1| hypothetical protein ZEAMMB73_293789 [Zea mays]
Length = 520
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 92/442 (20%), Positives = 180/442 (40%), Gaps = 56/442 (12%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL--DSDGGEIRVTCFNAVA 278
PIA L+P I+ R+ K E R N DG + H +L+ D G I A+
Sbjct: 5 PIAELDPKSTNAAIRVRIIRKWEFRGATN---DGPLRHVNLILADEQGTAIHAEIQAALV 61
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D ++ K+Y + R + P++ + + N + I + + ++ + + PR +
Sbjct: 62 DDKGSLIQIDKVYELKRFRVTPSRNYYKPVDNSMMIQFTLYTQAKVVEDPPPTFPRYAYK 121
Query: 339 FRPINDVEGMENNS--VVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTL 396
++ +N ++D++G+++ I + N R + L+D++ S ++TL
Sbjct: 122 LTSFENIGNNVDNKTYLIDVLGILTEIGSLHHVGYNNSNII--RDIFLKDINNTSTKVTL 179
Query: 397 WGN----FCNDDGLRLQHMCDSGVFPILAVKAGRVSD-FNGKV-VGTISTTQLFIEPDFP 450
WG+ F D+ D+ P++ + G ++ F G+ + + + PD P
Sbjct: 180 WGHQASSFSVDNIYD-----DNDNKPVVVLFVGCLAKRFKGEAYLSATAACTWYFNPDIP 234
Query: 451 EAH---------RLK----EWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGT 497
EA +L+ + EKE + +Q+++I ++ + + Q+ +
Sbjct: 235 EAQVYYSKLLNTKLQMIRPQATEKELQASQTLNIEDKTI--------EELLQLDPDMFPE 286
Query: 498 KEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECD 557
+T+S ++ + + +C CNK G + C C+ + E
Sbjct: 287 HGFKCTVTISR---LVQDGRWWFPSC------IKCNKSSSQTSTG-YQCTSCNGT--ETG 334
Query: 558 YRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTK 617
+RY L F D T F A+ I+G S + L+S V + + + FT
Sbjct: 335 FRYKLNFIATDGTSEAEFFCFDSIAKRIVGKSCQTLFSTSDVSRGPPPDLAAIISLKFT- 393
Query: 618 YLFKLKVKEETFSDEQRVKSTV 639
F + + FS RV S +
Sbjct: 394 --FVVTINMSAFSVTNRVFSIL 413
>gi|391325776|ref|XP_003737403.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
gi|391325887|ref|XP_003737458.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
gi|391326850|ref|XP_003737923.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
gi|391332922|ref|XP_003740876.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
gi|391333156|ref|XP_003740987.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
gi|391341618|ref|XP_003745124.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
Length = 280
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 108/231 (46%), Gaps = 12/231 (5%)
Query: 234 IKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLV 293
++ RV +K ++H++ G GK+F+F + D+ GEI V A++ + + G+ Y +
Sbjct: 46 VEGRVKSKTPVKHWSKGDGSGKIFNFVMSDT-SGEINVIASGDSAEEIFDMITVGQCYKI 104
Query: 294 SRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSV 353
+ +K N + D E L +T + ++ +P+ Q + ++ N+
Sbjct: 105 NAYKVKAV--NPQYRATDHECELQLTKLSKVIPITGNDLPKIQAQTTVLMELLTKPVNTT 162
Query: 354 VDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCD 413
VD++ VV + P + ++G K+T+ + D S + V L LW F D
Sbjct: 163 VDILVVVFDVRPPQTFNCRDGINRVKQTVTVLDDSMKMVNLGLWSEFVGK--------LD 214
Query: 414 SGVFPILAVKAGRVSDFNG-KVVGTISTTQLFIEPDFPEAHRLKEWFEKEG 463
+ ++ +V D+NG + + T + T + +A RL++WF+ +G
Sbjct: 215 GKEGEAVILQNLQVRDYNGTRQLSTTTNTIIREAAGDADAERLRQWFKVDG 265
>gi|195330774|ref|XP_002032078.1| GM26361 [Drosophila sechellia]
gi|194121021|gb|EDW43064.1| GM26361 [Drosophila sechellia]
Length = 228
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 107/252 (42%), Gaps = 35/252 (13%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PI +L +IKARV K E+ + + G V+ LLD + GEI F +
Sbjct: 1 PICSLTTGFYISSIKARVIWKSEITQWRKGQKCGIVYIMHLLD-ESGEITGIVFADYDNG 59
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQL--CYEDDASIPRQQFH 338
FY Q++ G +YL+S ++ A ++ N ++F +++L C IPR++++
Sbjct: 60 FYGQIQPGLVYLISGFDVEEAISDYKVSDNPYQLFFRHNIVLELSAC----GRIPREKYN 115
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
F P+ V + VD IG+ + + L + G R + L D V L LW
Sbjct: 116 FLPLVKVSSKADKDPVDAIGICTAV---GRLEERRGFFI--REILLVDPFYHPVMLNLWQ 170
Query: 399 ----NFC---NDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTIST-TQLFIEPDFP 450
NF ND ++ VK R N K+ S T + I PD P
Sbjct: 171 KEAVNFVGQPND---------------VIVVKGARAQPHNNKMKLNASWYTNVQINPDIP 215
Query: 451 EAHRLKEWFEKE 462
+A L W+ +
Sbjct: 216 DATALLAWYNNQ 227
>gi|413950218|gb|AFW82867.1| hypothetical protein ZEAMMB73_164578, partial [Zea mays]
Length = 73
Score = 69.3 bits (168), Expect = 8e-09, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 388 SGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEP 447
SGRS+ +TL G FC+ +G +LQ CDSG+ P++A+K V+DF G+ + +I TQ I P
Sbjct: 1 SGRSISITLCGKFCDVEGRQLQEQCDSGLNPVIALKGACVTDFVGRSLSSIGPTQFKIYP 60
Query: 448 DFPE 451
DF E
Sbjct: 61 DFHE 64
>gi|414888073|tpg|DAA64087.1| TPA: hypothetical protein ZEAMMB73_996720 [Zea mays]
Length = 483
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 82/389 (21%), Positives = 161/389 (41%), Gaps = 49/389 (12%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSD--GGEIRVTCFNAVA 278
P++AL ++ +V K E R +G + H D++ +D G I + +A
Sbjct: 5 PLSALTLQDRNAEVQIQVHRKWEFR---GAVDNGPILHIDMILTDCTGNAIHCQIPSFLA 61
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
+ + GKIY ++R S+ A+ + + DL +++ + ++LC+ + P +H
Sbjct: 62 ATRGDEFQVGKIYKMTRFSVARAKSTYKPVDGDLMLYVKPYTTLELCHTSPSGFPLYVYH 121
Query: 339 FRPIN--DVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTL 396
+ D +G + D++G+++ IS + + + R + ++++S +++TL
Sbjct: 122 LTSYDKIDPDGSNARNFHDVLGIITEISAIKPVGNAHIPSSYNRHVLIKNLSDDILKITL 181
Query: 397 WGNFCNDDGLRLQHMCDSGVF------PILAVKAGRV-SDFNGKVVGT-ISTTQLFIEPD 448
WG R Q + + PI+ + G + ++ G+V+ + + + P
Sbjct: 182 WGK-------RAQEFSLTNTYDPQKQTPIVVLFVGCLPKEYQGEVLLSGGAACHWYFNPS 234
Query: 449 FPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDW---IT 505
EA E E N + S+ + ++ R+ + L + PD T
Sbjct: 235 IEEAEAFYSRIESEKINIELPSLDKQEITPPSFPQREHHNLKYILSLNPHDVPDQGYECT 294
Query: 506 VSATIV-------YIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDY 558
V+ T + YI C+ CP ++P V+ C C +S C +
Sbjct: 295 VTITCIPEGKTWYYIACNT-----CP----NKPSIDPVIR------QCSTC-RSTNYC-F 337
Query: 559 RYILQFQIQDHTGLTWVTAFQECAEEIMG 587
RY L F+ D T + AF A I+G
Sbjct: 338 RYKLTFKASDGTEEAEMFAFDNVARTIIG 366
>gi|321460652|gb|EFX71693.1| hypothetical protein DAPPUDRAFT_111469 [Daphnia pulex]
Length = 302
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 128/286 (44%), Gaps = 21/286 (7%)
Query: 211 GKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIR 270
G+S V I + L+P + +W I+ RV L + +GD +F+F LLDS G ++
Sbjct: 29 GQSVVKEVFIDVNKLSPDLRRWKIRGRVCRISRLFPF---KGDRNMFYFGLLDS-SGLLK 84
Query: 271 VTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDA 330
V F AD++Y VE G+++ + + A+ N E+ L S V+ +DD
Sbjct: 85 VKAFGGDADKYYGIVEEGEMFSIEYARVSVAKNPNNIFPLKFEVILAKESEVERLEQDD- 143
Query: 331 SIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMS-- 388
+ PR + + V + + + D I V+ Y + +RK E +K L + D S
Sbjct: 144 TFPRLKVVKYDLKKVRDLPHGTFFD-IEVIVYKAGCVVDVRKG--ELRKLELEVFDASMK 200
Query: 389 -GRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLF--- 444
G +V++TLW NDD + + + L+++ +++ + S +F
Sbjct: 201 PGETVKVTLW----NDDIELVSPLDLRKYYYKLSIQDATCNEYLQREYIQTSKASVFKIA 256
Query: 445 -IEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRAD--IRKTV 487
+E D E+ + W K+ K+ D + V D IRK V
Sbjct: 257 KVECDSTESRVVSLWKAKKFKDVGETKRKSDHVPVVTEDEKIRKLV 302
>gi|449688707|ref|XP_004211822.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Hydra magnipapillata]
Length = 99
Score = 68.9 bits (167), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 58/97 (59%), Gaps = 2/97 (2%)
Query: 566 IQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVK 625
I D +G W+TAFQE AE I+ +SA+ + LK D + +F + A F ++FK++ K
Sbjct: 3 IADFSGNQWITAFQESAEAILCVSAEQIGHLK--DSDVSQFDMIFSEACFKPFVFKVRAK 60
Query: 626 EETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLK 662
ET+ DE+++K + + A N+ E + +LD + L+
Sbjct: 61 METYQDERKLKCSAMSAAPVNFKQECKRLLDEIKNLE 97
>gi|218200560|gb|EEC82987.1| hypothetical protein OsI_28022 [Oryza sativa Indica Group]
Length = 705
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 82/347 (23%), Positives = 160/347 (46%), Gaps = 43/347 (12%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQR-GDGKVFHFDLL--DSDGGEIRVTCFNAVA 278
I+ L W+IKA++ LR +++ ++ FD+L D +G I T + +
Sbjct: 6 ISELTTKGQTWSIKAKI-----LRMWDSVNFATDEIMSFDMLLMDEEGETIHATIWKNLI 60
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEI-FLDMTSMVQLCYEDDASIPRQQF 337
D F + IY S ++ + K + + DL+I F+ T + ++ AS +++
Sbjct: 61 DNFRPMISENSIYAFSNFKVQESTK-YCPVDKDLKITFMYNTKVKEM---KGASNKFKEY 116
Query: 338 HFRPIND---VEGMENNSVV-DLIGVVSYISPTASLM-RKNGTETQK---RTLHLRDMSG 389
+F V+ + + ++ D+IG+++ I P S M KN T + R + L + G
Sbjct: 117 YFEFATRETLVDRVNKDKILSDVIGLLTKIKPIESRMIMKNSTNPRPKDIREIELLLLDG 176
Query: 390 RSVELTLWGNFC---NDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIE 446
+ +TLWG N+D + G ++ V + V +FNG + + S T+L+ +
Sbjct: 177 AKIRVTLWGQLAHSLNEDVI--------GNHTVVVVTSTTVQEFNGLSLRSSSATRLYTD 228
Query: 447 PDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADI---RKTVSQIKDEGLGTKEKPDW 503
+ PE ++ E + + + + + + RKT+ +I + G + D+
Sbjct: 229 INIPETWKIISRHSDEQNLPKLMEVDKSTQGTLEEQMFYNRKTLQEITNMGHDDTKSQDF 288
Query: 504 I-TVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRC 549
I T ATI +++ + Y +C CNKKV+ D +++C++C
Sbjct: 289 ICTTKATIDHLQDVTWWYMSC------NDCNKKVVKKID-KYYCEKC 328
>gi|391328094|ref|XP_003738527.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
Length = 319
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 106/214 (49%), Gaps = 13/214 (6%)
Query: 234 IKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLV 293
I+ RV +K ++ ++ +GK+F+F +L + GE+ + AD + ++ G Y V
Sbjct: 78 IQGRVKSKTLVKSWSKGNANGKIFNF-VLRNTSGEMNIIVSGNAADDIFDKIAVGNCYKV 136
Query: 294 SRGSLKPAQKNFNHLHNDLEIFL-DMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNS 352
+ +K A + + +D E+ L ++ ++++ ED +P+ Q + ++ N+
Sbjct: 137 NAFKVKSAYQQYRVTGHDCELQLTKLSRIIEITGED---LPKIQASITTLAEIIFKPVNA 193
Query: 353 VVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMC 412
VD++ V+ + P + ++GT T+K+T+ + D + + VE+ LW F
Sbjct: 194 TVDILAVIFDVRPPQTFNCRDGTNTEKQTVLVVDDTMKMVEIGLWSEFVGK--------L 245
Query: 413 DSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIE 446
D+ + ++ +V DFN K + +T +F E
Sbjct: 246 DNKEGEAVVLQNLQVRDFNEKRQLSTTTNTIFGE 279
>gi|413952084|gb|AFW84733.1| hypothetical protein ZEAMMB73_599002 [Zea mays]
Length = 289
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 113/239 (47%), Gaps = 14/239 (5%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL--DSDGGEIRVTCFNAVA 278
PI LNP I+ RV K E R N DG + H +L+ D G I A+A
Sbjct: 5 PITELNPQKINVVIRVRVIRKWEFRGATN---DGPLRHINLILADEQGTAIHAEIPAALA 61
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
Q ++ K+Y + + P++ F +HN+L I + + ++ + P ++
Sbjct: 62 IQKGSLIQIDKVYEIRHFRVMPSRGYFRPVHNNLMIQFTLYTQAKVVNDPPHIFPIYIYN 121
Query: 339 FRPINDV-EGMEN-NSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTL 396
V E ++N N ++D+IG+++ I A + + R + ++D+S S+++ L
Sbjct: 122 LTSFEKVEENVDNRNYLIDVIGMLTQIG--APHVAGYNNSSIVRDIFIKDISDASLKIML 179
Query: 397 WGNFCNDDGLRLQHMC-DSGVFPILAVKAGRVS-DFNGK-VVGTISTTQLFIEPDFPEA 452
WG+ G + ++C +S PI+ + G ++ F G+ + + + T + P+ PEA
Sbjct: 180 WGD--QASGFSIDNVCNESNNKPIVIMFVGCLAKQFKGQSYLSSTTATTWYFNPNIPEA 236
>gi|297596199|ref|NP_001042171.2| Os01g0175300 [Oryza sativa Japonica Group]
gi|255672925|dbj|BAF04085.2| Os01g0175300 [Oryza sativa Japonica Group]
Length = 523
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/385 (20%), Positives = 165/385 (42%), Gaps = 24/385 (6%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDL--LDSDGGEIRVTCFNA 276
I PIA L P + I R++ E R N D + H DL LD G I
Sbjct: 3 ITPIAELRPGRYDYMICVRISRIWEFRGTNE---DDNIKHLDLVLLDQKGDAIYAEIPPD 59
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
++ G I +S+ ++ A+ ++ + N I L+ + + + P+
Sbjct: 60 AIPLLNQYLQEGNIVYISKITVNNAKPSYRAVGNPYMIKLNKRTCIIEAKDQPMDFPKYT 119
Query: 337 FHFRPINDVEGM--ENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVEL 394
F + + + + +D+IG + +S A + + +R + L+D+SG++++L
Sbjct: 120 FDLVSFDKLHDFTSKTDRFLDVIGKIIAVSNAAMISTSSSDYRMRRIVKLQDLSGKTIDL 179
Query: 395 TLWGNFCND-DGLRLQHM-CDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFI-EPDFPE 451
+L G + DG + + ++ + I + ++ + + + + +I E D PE
Sbjct: 180 SLSGKRAVEFDGETILEVGQNNHIIAIFVGTSMKILKGTYEFLSGTTACRWYINENDIPE 239
Query: 452 AHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIK--DEGLGTKEKPDWITVSAT 509
++ Q + + D + R+ KT++++K D + EK +AT
Sbjct: 240 IKMFQKCLPPHADPIQKLYLQSDE-DMQRSIEHKTLAELKEIDPFVDKDEK---YQCTAT 295
Query: 510 IVYIK-CDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQD 568
I+ I+ +CY AC + CN K++ +G C + + + +Y+Y + F D
Sbjct: 296 IIGIQERKTWCYQACKL------CNCKMIWDG-SILKCKKENCPCRQYEYKYKIPFIAND 348
Query: 569 HTGLTWVTAFQECAEEIMGMSAKDL 593
T + F++ E++G +A+ +
Sbjct: 349 GTASLELVLFEKKGTELIGRTAETM 373
>gi|297607725|ref|NP_001060485.2| Os07g0651500 [Oryza sativa Japonica Group]
gi|255678024|dbj|BAF22399.2| Os07g0651500 [Oryza sativa Japonica Group]
Length = 2021
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 104/244 (42%), Gaps = 21/244 (8%)
Query: 234 IKARVTAK-GELRHYNNQRGDGKVFHFDL--LDSDGGEIRVTCFNAVADQFYHQVEAGKI 290
+ R+ A+ L + + G G +FH DL LD G I + D ++ K+
Sbjct: 1637 LNTRILARVSRLWDFCDLNGSGNIFHTDLVLLDQMGNSIHAQIYPPAIDSLRPLLKEQKV 1696
Query: 291 YLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMEN 350
Y + +++ A + + + N L I + + E A P F P +D+ + +
Sbjct: 1697 YYIDSFTVRYANRTYRPVDNSLMIVFSKWTTFEEYIEPAADFPGITFSLTPFSDIPNLVD 1756
Query: 351 NSVV---------DLIGVVSYI-SPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNF 400
++ D++GV++ + SPT + ++ KRT+ + D S ++ +TLWG
Sbjct: 1757 KTIFYVGLYGMQPDVMGVITEVGSPTVVRPKSRNADSLKRTIQICDASNSTMPVTLWGE- 1815
Query: 401 CNDDGLRLQHMCDSGVF--PILAVKAGRVSDFNG---KVVGTISTTQLFIEPDFPEAHRL 455
D + ++G ++ V D+ G V G+ S + ++ D PE L
Sbjct: 1816 -RADAFDANSVYNAGQTQAQVIVFVGTLVKDYTGLGLTVTGS-SPCKWYLNLDIPEVLEL 1873
Query: 456 KEWF 459
KE F
Sbjct: 1874 KESF 1877
>gi|391329299|ref|XP_003739112.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Metaseiulus occidentalis]
Length = 214
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 86/181 (47%), Gaps = 5/181 (2%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
+R + L Y G ++ RVT+K ++ ++ +GK+F F L+ + I V
Sbjct: 38 TRFLKDVVLTRYGG--VLEGRVTSKTPIKEWSKNGKEGKLFSF-LMADETARISVIVSGD 94
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
D+ + ++ Y ++ KP +F+ ++ E+ L S ++ DD IP+ Q
Sbjct: 95 KTDEVFSTIQVNHCYRITGFKPKPVNPHFSSTDHECEVTLSKISKIKEIERDD--IPQTQ 152
Query: 337 FHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTL 396
I + +E N ++DL ++ + P ++ ++G+ +K+T L D S + V L L
Sbjct: 153 SLCSSIASILNIEKNCLIDLTAILFDLLPVQNITCRDGSIQKKQTALLVDDSKKIVSLDL 212
Query: 397 W 397
W
Sbjct: 213 W 213
>gi|10177987|dbj|BAB11360.1| replication protein A1-like protein [Arabidopsis thaliana]
Length = 543
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 82/436 (18%), Positives = 168/436 (38%), Gaps = 68/436 (15%)
Query: 215 VPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL--DSDGGEIRVT 272
+P + ++ + P+ W ++ ++ H Q D D++ D +G ++ +T
Sbjct: 3 LPLGLTYLSDVKPFKTNWCVRVKIL------HLWRQTKDASRETLDVIICDENGSKMHIT 56
Query: 273 CFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASI 332
+F+ ++ G ++ +L P + + + + V C
Sbjct: 57 IRKHYIGKFHRSIKVGDWKIIDNFTLSPLTGKYKISSLTYRMAFNHNTDVIKCD------ 110
Query: 333 PRQQFHFRPINDVEGM-----ENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDM 387
P F + D EG+ + N ++D++G V + +M +N +K +RD
Sbjct: 111 PVSDSVFLDLADFEGVKTESYDENVLIDILGQVVRVGKVDEIMAQNKP-NKKLEFQIRDA 169
Query: 388 SGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEP 447
S + TLWG F L+ + +L ++ ++++F G +S ++ I P
Sbjct: 170 SNERLPCTLWGVFAEKVFSALKSIKHDEKTVVL-IRYAKINNFKGNHAFDVS--EVIINP 226
Query: 448 -DFPEAHRLKEWFEKEGK--NTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWI 504
PE + +G Q ++RD + VG+ I ++ I DW
Sbjct: 227 VHVPEVELFVKSLPSDGLALTIQDNYVNRDLIKVGQWRILGSIFAID---------TDW- 276
Query: 505 TVSATIVYIKCDNFCYTACPIMIGDRPCNKK-------------VMNNGDGRWHCDRCDQ 551
+ Y CP CN+K V ++ CD+C +
Sbjct: 277 ------------GWFYFGCP------KCNRKTELVKESTSTGKMVKTPMKPKFWCDKCQE 318
Query: 552 SVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEK-FGEVV 610
S+ + RY L ++ D T + F+ A +++G S+++L +Y + D +V+
Sbjct: 319 SITNVEARYKLHVRVMDQTAEIKLMVFENNATKLIGKSSEELVDGQYEEIKDPTIISDVI 378
Query: 611 RNATFTKYLFKLKVKE 626
N + F + V++
Sbjct: 379 TNLCGKTFHFLVSVEK 394
>gi|357491997|ref|XP_003616287.1| Replication factor A protein [Medicago truncatula]
gi|355517622|gb|AES99245.1| Replication factor A protein [Medicago truncatula]
Length = 517
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 160/372 (43%), Gaps = 23/372 (6%)
Query: 232 WTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIY 291
W IK RV E+ + + L+D G +I + + F ++ GK+Y
Sbjct: 18 WKIKVRVLRLWEVPSFLKPDQTNSL-EMVLIDEMGTKIHASVRKQLFYVFQSKLSEGKVY 76
Query: 292 LVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDV--EGME 349
+S S+ P+ ++ + +I MT+ VQ C + ASIP I DV +
Sbjct: 77 EMSCFSVAPSVGSYRTTLHPYKIVFQMTTKVQAC--EGASIPSLGISLCKIADVCQHTSD 134
Query: 350 NNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQ 409
++ +VD++G ++ IS +R +G T+ + D SG+ E L+G + D L
Sbjct: 135 HDYLVDVLGFMTGISVEREYVR-DGKVTKMVIFEITDASGKC-ECALFGQYV--DTLNKL 190
Query: 410 HMCDSGVFPILAVKAGRVSDFNGK--VVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQ 467
G PI+ V+ +V F K + ++TT++ I P +A ++++ +
Sbjct: 191 MGKSGGGMPIILVQFAKVKIFRDKASLQNVMNTTRILINPPIEQADQIRKSVTFGSMDVS 250
Query: 468 SVSI--SRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATI-VYIKCDNFCYTACP 524
SV +R +S+ D +T + E L + + V ATI + +++ Y AC
Sbjct: 251 SVPRIGARSKVSL-EEDFLRTFPKKTLEQLHSTFEDGVFVVYATIGGLVDHEDWWYPAC- 308
Query: 525 IMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEE 584
C++ V + G ++C C + V + R+ ++ + D T + F +
Sbjct: 309 ------KCHRSVSADS-GAFYCKGCAKHVFQMVPRFRVKVNVSDATNVGVFVVFDGDMQN 361
Query: 585 IMGMSAKDLYSL 596
++ L S+
Sbjct: 362 LLNTPCSSLVSV 373
>gi|321477092|gb|EFX88051.1| hypothetical protein DAPPUDRAFT_96245 [Daphnia pulex]
Length = 270
Score = 67.8 bits (164), Expect = 2e-08, Method: Composition-based stats.
Identities = 58/197 (29%), Positives = 94/197 (47%), Gaps = 15/197 (7%)
Query: 211 GKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIR 270
G+S V I + L+P + +W I+ RV L + +GD +F+F LLDS G ++
Sbjct: 29 GQSVVKEVFIDVNKLSPDLRRWKIRGRVCRISRLFPF---KGDRNMFYFGLLDSS-GLLK 84
Query: 271 VTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDA 330
V F AD++Y VE G+++ + + A+ N E+ L S V +DD
Sbjct: 85 VKAFGGDADKYYGIVEEGEMFSIEYARVSVAKNPNNIFPLKFEVILAKESEVDRLEQDD- 143
Query: 331 SIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMS-- 388
+ PR + + V + + + D I V+ Y + +RK E +K L + D S
Sbjct: 144 TFPRLKVVKYDLKKVRDLPHGTFFD-IEVIVYKAGCVVDVRKG--ELRKLELEVFDASMK 200
Query: 389 -GRSVELTLWGNFCNDD 404
G +V++TLW NDD
Sbjct: 201 PGETVKVTLW----NDD 213
>gi|324515631|gb|ADY46264.1| Replication factor A 73 kDa subunit [Ascaris suum]
Length = 124
Score = 67.4 bits (163), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Query: 541 DGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVD 600
D ++ C++C+ ++ Y +L ++ D +G WVT F+E A +++G +A +L L +
Sbjct: 2 DNQYRCEKCNLTLDSFKYVLLLSMELSDFSGSHWVTVFEEKATKLLGKTAAELGDLLESN 61
Query: 601 QNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDK 660
+ DE + +V F +Y F+++ K E ++D +R+K +V + +Y + + K
Sbjct: 62 RLDE-YNDVFSAVRFREYTFRIRAKSEFYNDTERIKWSVFELNNVDYDKYVEELTKAVTK 120
Query: 661 LK 662
L+
Sbjct: 121 LE 122
>gi|9294533|dbj|BAB02796.1| replication protein A1-like [Arabidopsis thaliana]
Length = 581
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 94/405 (23%), Positives = 158/405 (39%), Gaps = 70/405 (17%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQF 281
+ + PY W + +V R Y G+ F D G +I + + ++
Sbjct: 8 LTDVRPYKTSW--RVQVKTLHAWRQYTANTGETLEVVFS--DETGKKIHCSVRKDLVSKY 63
Query: 282 YHQVEAGKIYLVSRGSLKPAQKNF---NHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
+ + G+ + SL A +F +HL+ F++ TS++ D++
Sbjct: 64 ANMLTVGEWVFIETFSLNYAGGSFRPTSHLYK--MSFVNGTSVIPSPSVSDSNYLTLA-T 120
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
F I E + +VD+IG + I L N T K +RD S + +TLWG
Sbjct: 121 FEKIQSGE-LNPTMLVDVIGQIVMIGELEEL-EANNKPTTKIDFDIRDASDERIGVTLWG 178
Query: 399 NF-------CNDDGLRLQHMCDSGVFPILAV-KAGRVSDFNG--KVVGTISTTQLFIEPD 448
F CN+ G R P++ V + ++ + G + + +Q+F+ P
Sbjct: 179 TFAQQVYRGCNEAGAR----------PVVCVLRFVKIKSYKGVRNLSNSFDASQVFVNPQ 228
Query: 449 FPEAHRLKEWFEKEG----------KNTQSVSISRDS-LSVGRADIRKTVSQIKDEGLGT 497
FPE ++G K VS DS L R I++ ++ + D G
Sbjct: 229 FPEVDAFLRTLPQDGILLTYRERIPKLEIVVSKKSDSCLEYPRNTIQQLLNAV-DVGKAR 287
Query: 498 KEKPDWITVSATIVYIKCD-NFCYTACPIMIGDRPCNKKVMNNGDG-----------RWH 545
+ TI I D + Y +C R CNKKV + G R+
Sbjct: 288 --------LMCTIYAIDTDWAWYYISC------RACNKKVTHIHSGVHGVNNKGKKPRFW 333
Query: 546 CDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSA 590
CD C V RY++ ++ D+TG + + F + EI+G +A
Sbjct: 334 CDSCKTVVTNVIARYMIYAKVMDNTGESKLLLFDQICTEIIGETA 378
>gi|297724261|ref|NP_001174494.1| Os05g0523100 [Oryza sativa Japonica Group]
gi|255676500|dbj|BAH93222.1| Os05g0523100 [Oryza sativa Japonica Group]
Length = 1068
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 90/398 (22%), Positives = 165/398 (41%), Gaps = 69/398 (17%)
Query: 209 LVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYN--NQRGDGKVFHFDL--LDS 264
LV + PS +I L P +W IK +V +R ++ N + + + LD+
Sbjct: 244 LVRDNMAPSNLI--TELTPKNDRWRIKVKV-----IRLWDAVNPTMVDEFYGIQMIVLDA 296
Query: 265 DGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQL 324
+G I V+ +A+ F +++ IY + K + L N+L+I ++V+
Sbjct: 297 EGNSIHVSISKQLANHFRPKIKINSIYTFKNFKVMEHDK-YRVLKNNLKILFYHDTIVK- 354
Query: 325 CYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHL 384
E +D+IG++S + P M T +++R ++
Sbjct: 355 ------------------------ETCLYLDVIGLLSGMKPIEQRMLGKNT-SRERVCNM 389
Query: 385 RDMSGR-----SVELTLWGNFCNDDGLRLQHMCDSGVF--PILAVKAGRVSDFNGKVV-- 435
R++ V++TLWG+ L +M D + + + G + K++
Sbjct: 390 REIELLLLEGEKVKITLWGDI-------LANMVDDDLLGKQTVFIATGLLVKEYEKLLSF 442
Query: 436 GTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADI-----RKTVSQI 490
G S+T++F++ + P + + E I D+ + G + RKT+ +I
Sbjct: 443 GVTSSTEVFLDMEIPASMEILSRHNAE--KVLPTMIEVDASTQGTIEEQMFYNRKTLKEI 500
Query: 491 KDEGLGTKEKPDWI-TVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRC 549
+ ++ ++I TV A I IK N+ Y +C C + +N + C+ C
Sbjct: 501 TELRYSNIQQKEFICTVKAKIEEIKSRNWWYMSCDKCF----CGTRKESNV---YICNSC 553
Query: 550 DQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMG 587
+ V RY++ +I DHT T T F E AE I G
Sbjct: 554 GKEAVNPKPRYVINLEISDHTTRTTCTIFNEEAERIFG 591
>gi|147818369|emb|CAN60163.1| hypothetical protein VITISV_008661 [Vitis vinifera]
Length = 774
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 88/181 (48%), Gaps = 21/181 (11%)
Query: 484 RKTVSQIKDEGLGTKEKPDWITVSATIVYIKCD-NFCYTACPIMIGDRPCNKKVMNNGDG 542
R ++S + ++KP + ++ A I +IK + Y AC + CNKKV +
Sbjct: 612 RVSLSHVTSNPSLGEDKPSFFSIRAYISFIKPEQTMWYQAC------KTCNKKVTD---- 661
Query: 543 RWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQN 602
+E Y YI+ ++ D +G + F E AE I G SA +L LK +
Sbjct: 662 ----------AIESGYWYIMVVKVSDDSGEACLALFNEQAERIFGCSADELDKLKSQEGE 711
Query: 603 DEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLK 662
+ +F + ++ A + +LF++ V + + +E+R T ++++ +R +L+ + K+K
Sbjct: 712 ENRFQQKLKEAIWVPHLFRISVAQHEYMNEKRQWITAXAVVAVDFAAXSRLLLEEISKMK 771
Query: 663 S 663
+
Sbjct: 772 T 772
>gi|440799699|gb|ELR20743.1| leucine rich repeat-containing protein [Acanthamoeba castellanii str.
Neff]
Length = 1419
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 25/145 (17%)
Query: 503 WITVSATIVYIKCDNFCYTACPIMIGDRPCNKKV--MNNGD--------------GRWHC 546
+ +V T+ I+ Y ACP C+KKV + GD RW+C
Sbjct: 1242 YASVVCTVNEIRTSGMWYPACPW----PKCHKKVEEYHGGDEGYDGEEEGQQHHQKRWYC 1297
Query: 547 DRCDQSVVECDY--RYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDE 604
C++ V Y RY+ +I DHTG W+ AF E A ++G SA++L LK D ++
Sbjct: 1298 KTCNR-VYAGRYVNRYMASLRIVDHTGDLWLRAFDEAAAPLLGTSAQELSQLK--DFDET 1354
Query: 605 KFGEVVRNATFTKYLFKLKVKEETF 629
F + V+ A ++ ++KV +ET+
Sbjct: 1355 LFVDKVKEAQLQRHEMRVKVVQETY 1379
>gi|77551838|gb|ABA94635.1| hypothetical protein LOC_Os11g38310 [Oryza sativa Japonica Group]
Length = 764
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 90/388 (23%), Positives = 161/388 (41%), Gaps = 73/388 (18%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYN--NQRGDGKVFHFDL--LDSDGGEIRVTCFNAV 277
I AL P +W IK +V +R ++ N + + + LD++G I V+ +
Sbjct: 7 ITALTPKNDRWRIKVKV-----IRLWDAVNPTMVDEFYGIQMIVLDAEGNSIHVSISKQL 61
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
A+ F +++ IY + K + L N+L+I ++V+
Sbjct: 62 ANHFRPKIKINSIYTFKNFKVMEHDK-YRVLKNNLKILFYHDTIVK-------------- 106
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGR-----SV 392
E +D+IG++S + P M T +++R ++R++ V
Sbjct: 107 -----------ETCLYLDVIGLLSGMKPIEQRMLGKNT-SRERVCNMREIELLLLEGEKV 154
Query: 393 ELTLWG----NFCNDDGLRLQHMCDSGVFP---ILAVKAGRVSDFNGKVVGTISTTQLFI 445
++TLWG N +DD L Q VF +L + ++ F G S+T++F+
Sbjct: 155 KITLWGDILANMVDDDLLGKQ-----TVFIATGLLVKEYEKLLSF-----GVTSSTEVFL 204
Query: 446 EPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADI-----RKTVSQIKDEGLGTKEK 500
+ + P + + + I D+ + G + RKT+ +I + ++
Sbjct: 205 DMEIPASMEI--LSRHNAEKVLPTMIEVDASTQGTIEEQMFYNRKTLKEITELRYSNIQQ 262
Query: 501 PDWI-TVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYR 559
++I TV A I IK N+ Y +C C + +N + C+ C + V R
Sbjct: 263 KEFICTVKAKIEEIKSRNWWYMSCDKCF----CGTRKESNV---YICNSCGKEAVNPKPR 315
Query: 560 YILQFQIQDHTGLTWVTAFQECAEEIMG 587
Y++ +I DHT T T F E AE I G
Sbjct: 316 YVINLEISDHTTRTTCTIFNEEAERIFG 343
>gi|322783921|gb|EFZ11105.1| hypothetical protein SINV_13954 [Solenopsis invicta]
Length = 301
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 30/157 (19%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PIA LN IKAR K +++ +NN R GK F L+D+ G+I T F + D+
Sbjct: 147 PIAKLNG-RDSGVIKAREIEKSQVKLWNNNRRRGKYFFITLIDA-SGKISCTAFQDMVDK 204
Query: 281 FYHQV---------------------------EAGKIYLVSRGSLKPAQKNFNHLHNDLE 313
F++ + + G +Y VSR LK A K FN N+ E
Sbjct: 205 FFNLIVVSVPCAESDVSDDRANLPFQPFHLILQVGNVYHVSRCHLKKADKRFNTTKNNYE 264
Query: 314 IFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMEN 350
+ + + ++ C+ D S+P F+F IN ++ +N
Sbjct: 265 LIVHFFTRLEPCH-DHYSVPTIWFNFSTINQIKSKKN 300
>gi|77552440|gb|ABA95237.1| hypothetical protein LOC_Os11g44840 [Oryza sativa Japonica Group]
Length = 757
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 91/388 (23%), Positives = 161/388 (41%), Gaps = 73/388 (18%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYN--NQRGDGKVFHFDL--LDSDGGEIRVTCFNAV 277
I AL P +W IK +V +R ++ N + + + LD++G I V+ +
Sbjct: 7 ITALTPKNDRWRIKVKV-----IRLWDAVNPTMVDEFYGIQMIVLDAEGNSIHVSISKQL 61
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
A+ F +++ IY + K + L N+L+I ++V+
Sbjct: 62 ANHFRPKIKINSIYTFKNFKVMEHDK-YRVLKNNLKILFYHDTIVK-------------- 106
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGR-----SV 392
E +D+IG++S + P M T +++R ++R++ V
Sbjct: 107 -----------ETCLYLDVIGLLSGMKPIEQRMLGKNT-SRERVCNMREIELLLLEGEKV 154
Query: 393 ELTLWG----NFCNDDGLRLQHMCDSGVFP---ILAVKAGRVSDFNGKVVGTISTTQLFI 445
++TLWG N +DD L Q VF +L + ++ F G S+T++F+
Sbjct: 155 KITLWGDILANMVDDDLLGKQ-----TVFIATGLLVKEYEKLLSF-----GVTSSTEVFL 204
Query: 446 EPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADI-----RKTVSQIKDEGLGTKEK 500
+ + P + + E I D+ + G + RKT+ +I + ++
Sbjct: 205 DMEIPASMEILSRHNAEK--VLPTMIEVDASTQGTIEEQMFYNRKTLKEITELRYSNIQQ 262
Query: 501 PDWI-TVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYR 559
++I TV A I IK N+ Y +C C + +N + C+ C + V R
Sbjct: 263 KEFICTVKAKIEEIKSRNWWYMSCDKCF----CGTRKESNV---YICNSCGKEAVNPKPR 315
Query: 560 YILQFQIQDHTGLTWVTAFQECAEEIMG 587
Y++ +I DHT T T F E AE I G
Sbjct: 316 YVINLEISDHTTRTTCTIFNEEAERIFG 343
>gi|297736413|emb|CBI25136.3| unnamed protein product [Vitis vinifera]
Length = 168
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 14/148 (9%)
Query: 417 FPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWF-EKEGKNTQSVSISRDS 475
FPI+A+K+ +V DF G + T+S + + PD PE+ +L+ W+ + GK I D
Sbjct: 26 FPIIAIKSLKVGDFQGVSLSTLSKSIALVNPDTPESKKLRSWYHDYHGKVASMACIGSDI 85
Query: 476 LSVGRADIRK------TVSQIKDEGLGTKEKPDWITVSATIVYIKCD-NFCYTACPIMIG 528
+ +R ++S + ++KP + ++ A I +IK + Y AC
Sbjct: 86 SPSSKGGVRSMYYDRVSLSHVTSNPSLGEDKPSFFSIRAYISFIKPEQTMWYQAC----- 140
Query: 529 DRPCNKKVMNNGDGRWHCDRCDQSVVEC 556
+ CNKKV + + + C+ C+++ EC
Sbjct: 141 -KTCNKKVTDAIESGYWCEGCEKNDDEC 167
>gi|62733633|gb|AAX95750.1| Eukaryotic protein of unknown function (DUF889), putative [Oryza
sativa Japonica Group]
gi|110288790|gb|ABG65978.1| hypothetical protein LOC_Os10g12174 [Oryza sativa Japonica Group]
Length = 1806
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 81/169 (47%), Gaps = 6/169 (3%)
Query: 236 ARVTAK-GELRHYNNQRGDGKVFHFDLL--DSDGGEIRVTCFNAVADQFYHQVEAGKIYL 292
+R+ A+ L + + + K++H DL+ D GG I F + F + GK+Y
Sbjct: 1330 SRLLARVSRLWEFTDCKDATKIYHIDLVLVDEKGGSIHAQIFPPLIQVFKPLLAEGKVYY 1389
Query: 293 VSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGM--EN 350
+ +K + K++ + N L + + V+ C + + P + P+N+V +N
Sbjct: 1390 LDSYRVKTSNKSYRPVANPLMMTFTKWTSVEQCLDVPFNFPTVVYSLTPLNEVSNFVDKN 1449
Query: 351 NSVVDLIGVVSYIS-PTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
S VD+IG ++ IS PT + + KRT+ + D + ++ ++LW
Sbjct: 1450 ESFVDVIGFITEISTPTMLRPKSRDVSSLKRTVQICDTNNSTLNVSLWA 1498
>gi|385305381|gb|EIF49362.1| subunit of heterotrimeric replication protein a [Dekkera
bruxellensis AWRI1499]
Length = 100
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 212 KSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRV 271
K P + I L+PY WTIKARV+ K ++R ++NQRG+GK+F+ + LD + GEIR
Sbjct: 39 KKAEPDNLYSIDQLSPYQNNWTIKARVSYKSDMRTWSNQRGEGKLFNVNFLD-ETGEIRA 97
Query: 272 TCF 274
T F
Sbjct: 98 TGF 100
>gi|242041189|ref|XP_002467989.1| hypothetical protein SORBIDRAFT_01g037705 [Sorghum bicolor]
gi|241921843|gb|EER94987.1| hypothetical protein SORBIDRAFT_01g037705 [Sorghum bicolor]
Length = 122
Score = 66.6 bits (161), Expect = 6e-08, Method: Composition-based stats.
Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
Query: 484 RKTVSQIKDEGLGTKEKPDWITVSATIVYIKCD-NFCYTACPIMIGDRPCNKKVMNNGDG 542
R +S I + +EKP + +++A I +IK + + Y AC CNK G G
Sbjct: 12 RIFLSHITSDPAMGQEKPVFFSLNAIISHIKPEQHMWYRACKTC-----CNKVTEAFGSG 66
Query: 543 RWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDL 593
W +RC+++ EC RYI+ ++ D G WV+ F E AE+I+G SA +L
Sbjct: 67 YWS-ERCNKNASECSLRYIMVIKVSDPNGEAWVSVFNEHAEKIIGYSADEL 116
>gi|195499029|ref|XP_002096774.1| GE24867 [Drosophila yakuba]
gi|194182875|gb|EDW96486.1| GE24867 [Drosophila yakuba]
Length = 189
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 93/205 (45%), Gaps = 21/205 (10%)
Query: 261 LLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTS 320
LLD + GEI FN + + FY ++ G +Y+ S ++ A++ N ++FL +
Sbjct: 3 LLD-ESGEITGVVFNNLVNVFYASIQTGLVYIFSGFEVRQAEQRLKVSDNPYQVFLLGNT 61
Query: 321 MVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKR 380
+V+L D IPR++++F P++ V + + VD IG+ S + N R
Sbjct: 62 VVELSASD--RIPREKYNFLPLSKVSSILDMEPVDAIGICSEVREL-----DNRAGYFIR 114
Query: 381 TLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKV---VGT 437
+ L D + V L LW + + D ++ VK R N ++ G
Sbjct: 115 EILLVDHDYQCVMLNLW----EKQAVNFEGKPDD----VIVVKGARAQTHNNEIKLNAGW 166
Query: 438 ISTTQLFIEPDFPEAHRLKEWFEKE 462
+ Q I PD PEA + EW++ +
Sbjct: 167 YTNVQ--INPDNPEATSMLEWYDNQ 189
>gi|413954915|gb|AFW87564.1| hypothetical protein ZEAMMB73_967726 [Zea mays]
Length = 289
Score = 66.2 bits (160), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 113/239 (47%), Gaps = 14/239 (5%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL--DSDGGEIRVTCFNAVA 278
PI LNP I+ RV K E R N DG + H +L+ D G I A+A
Sbjct: 5 PITELNPQKINVVIRVRVIRKWEFRGATN---DGPLRHINLILADEQGTAIHAEIPAALA 61
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
+ ++ +Y + + P++ F +HN+L I + + ++ + P ++
Sbjct: 62 IEKGSLIQIDIVYEIRHFRVMPSRGYFKPVHNNLMIQFTLYTQAKVVNDPPHIFPIYIYN 121
Query: 339 FRPINDVE-GMEN-NSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTL 396
VE ++N N ++D+IG+++ I A + + R + ++D+S S+++TL
Sbjct: 122 LTSFEKVEENVDNRNYLIDVIGMLTQIG--APHVAGYNNSSIVRDIFIKDISDASLKITL 179
Query: 397 WGNFCNDDGLRLQHMC-DSGVFPILAVKAGRVS-DFNGK-VVGTISTTQLFIEPDFPEA 452
WG+ G + ++C +S PI+ + G ++ F G+ + + + T + P+ PEA
Sbjct: 180 WGD--QASGFSIDNVCNESNNKPIVIMFVGCLAKQFKGQSYLSSTTATTWYFNPNIPEA 236
>gi|24960752|gb|AAN65446.1| Putative helicase [Oryza sativa Japonica Group]
gi|108706525|gb|ABF94320.1| hypothetical protein LOC_Os03g08400 [Oryza sativa Japonica Group]
Length = 764
Score = 65.9 bits (159), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 80/385 (20%), Positives = 165/385 (42%), Gaps = 24/385 (6%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDL--LDSDGGEIRVTCFNA 276
I PIA L P + I R++ E R N D + H DL LD G I
Sbjct: 244 ITPIAELRPGRYDYMICVRISRIWEFRGTNE---DDNIKHLDLVLLDQKGDAIYAEIPPD 300
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
++ G I +S+ ++ A+ ++ + N I L+ + + + P+
Sbjct: 301 AIPLLNQYLQEGNIVYISKITVNNAKPSYRAVGNPYMIKLNKRTCIIEAKDQPMDFPKYT 360
Query: 337 FHFRPINDVEGM--ENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVEL 394
F + + + + +D+IG + +S A + + +R + L+D+SG++++L
Sbjct: 361 FDLVSFDKLHDFTSKTDRFLDVIGKIIAVSNAAMISTSSSDYRMRRIVKLQDLSGKTIDL 420
Query: 395 TLWGNFCND-DGLRLQHM-CDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFI-EPDFPE 451
+L G + DG + + ++ + I + ++ + + + + +I E D PE
Sbjct: 421 SLSGKRAVEFDGETILEVGQNNHIIAIFVGTSMKILKGTYEFLSGTTACRWYINENDIPE 480
Query: 452 AHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIK--DEGLGTKEKPDWITVSAT 509
++ Q + + D + R+ KT++++K D + EK +AT
Sbjct: 481 IKMFQKCLPPHADPIQKLYLQSDE-DMQRSIEHKTLAELKEIDPFVDKDEK---YQCTAT 536
Query: 510 IVYIK-CDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQD 568
I+ I+ +CY AC + CN K++ +G C + + + +Y+Y + F D
Sbjct: 537 IIGIQERKTWCYQACKL------CNCKMIWDG-SILKCKKENCPCRQYEYKYKIPFIAND 589
Query: 569 HTGLTWVTAFQECAEEIMGMSAKDL 593
T + F++ E++G +A+ +
Sbjct: 590 GTASLELVLFEKKGTELIGRTAETM 614
>gi|224108251|ref|XP_002333414.1| predicted protein [Populus trichocarpa]
gi|222836505|gb|EEE74912.1| predicted protein [Populus trichocarpa]
Length = 756
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 119/278 (42%), Gaps = 20/278 (7%)
Query: 332 IPRQQFHFRPINDVEGMENNS--VVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSG 389
+PR F+F + S + D++G + + P +M T KR L ++ G
Sbjct: 336 VPRYYFNFIDYAHILTKSKGSRILTDVLGRLKALQPLEQVMVCGQTLENKREFMLENIRG 395
Query: 390 RSVELTLWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKV-VGTISTTQLFIEP 447
+ +TLWG+ D D L L H S V I+A RV++F GK + + +T+ + P
Sbjct: 396 EELHITLWGDSARDFDELAL-HNLPSPV--IIAFAGFRVTEFKGKPNLNSTTTSLWYFNP 452
Query: 448 DFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADI---RKTVSQIKDEGLGTKEKPDWI 504
D PE K +F + Q + S + + I R+T+ +I + K
Sbjct: 453 DIPECLAYKHFFAQLPVEIQQLPSSSNVVLSIEEQIKENRRTIHEILCMN-PYEHKHLRF 511
Query: 505 TVSATIVYIKCDN-FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQ 563
T A+IV N + Y +CP CNKK ++ G+ + C D + L+
Sbjct: 512 TYQASIVDFDFPNGWWYPSCP------KCNKK-LSGGEKNYTCMDHDAITSLPVPWFRLE 564
Query: 564 FQIQDHTGLTWVTAFQECAEEIMGMSAKD-LYSLKYVD 600
+ D +T F + AE G SA +Y K++D
Sbjct: 565 CIVTDGEDVTNFFLFGKTAENFFGSSAHHYVYDKKFID 602
>gi|145475015|ref|XP_001423530.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124390591|emb|CAK56132.1| unnamed protein product [Paramecium tetraurelia]
Length = 635
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 80/391 (20%), Positives = 166/391 (42%), Gaps = 42/391 (10%)
Query: 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGD--GKVFHFDLLDSDGGEIRVTCFN 275
+ I+ + P M KW ++ R+ K E + ++ D + F +LD + I +
Sbjct: 215 ELTKISVMYPNMKKWVLEGRIILKSEQLDFRCKKTDMISRYFKIIILDCEQEIIVGLFYE 274
Query: 276 AVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQ 335
+F+ ++ GK+Y G + + N +I + S++ + +IP
Sbjct: 275 KALSKFFSVLQQGKVYTFKNGCIGQDKANGTK-----KITFNEYSII--SESQNFAIPSA 327
Query: 336 -QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVEL 394
Q +F + ++E +++NS+VD++ V+ I K +++ K + + SV+
Sbjct: 328 PQLNFSTLQEIETLQHNSIVDVVAVIQEI--------KQDSDSCKSFIVFDQTTRLSVK- 378
Query: 395 TLWG-NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAH 453
LWG + N + LQ G I+ K + + N K + + T + D E
Sbjct: 379 -LWGAQYAN---INLQ----KG--EIMVFKGLKFYNTNFKSLNSDHQTMIIQNHDLNEVK 428
Query: 454 RLKEWFEKEGKNTQSVSISR-DSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVY 512
+LK W GKN ++ D+ ++ + + V ++ +E G ++ + + I+
Sbjct: 429 QLKSWL--AGKNIDTIMKPNPDNSTIDLQQLDEFVIKLLNE--GKTQQTSYKYIFGYIIE 484
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGR--WHCDRCDQSVVECDYRYILQFQIQDHT 570
++ + Y CP + C K M R + C +C + ++L+ I D
Sbjct: 485 LQENRNMYPCCPSL----RCKSK-MEEIPSRKTYRCKKCLTENPSPKFSFVLRVTIMDEF 539
Query: 571 GLTWVTAFQECAEEIMGMSAKDLYSLKYVDQ 601
F + A +++G++A L ++ + DQ
Sbjct: 540 TNIKAVIFDDIAVKLLGITADQLRAMSHEDQ 570
>gi|57899579|dbj|BAD87158.1| DNA binding protein-like [Oryza sativa Japonica Group]
gi|57899664|dbj|BAD87333.1| DNA binding protein-like [Oryza sativa Japonica Group]
Length = 1083
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 81/169 (47%), Gaps = 6/169 (3%)
Query: 236 ARVTAK-GELRHYNNQRGDGKVFHFDLL--DSDGGEIRVTCFNAVADQFYHQVEAGKIYL 292
+R+ A+ L + + + K++H DL+ D GG I F + F + GK+Y
Sbjct: 529 SRLLARVSRLWEFTDCKDATKIYHIDLVLVDEKGGSIHAQIFPLLLQVFKPLLTEGKVYY 588
Query: 293 VSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGM--EN 350
+ +K + K++ + N L + + V+ C + + P + P+N+V +N
Sbjct: 589 LDSYRVKTSNKSYRPVANPLMMTFTKWTSVEQCLDVPFNFPTVVYSLTPLNEVSNFVDKN 648
Query: 351 NSVVDLIGVVSYIS-PTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
S VD+IGV++ IS PT + + KRT+ + + ++ ++LW
Sbjct: 649 ESFVDVIGVITEISTPTMLRPKSRDASSLKRTVQICYANNSTLNVSLWA 697
>gi|55168169|gb|AAV44036.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 820
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 90/388 (23%), Positives = 160/388 (41%), Gaps = 73/388 (18%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYN--NQRGDGKVFHFDL--LDSDGGEIRVTCFNAV 277
I L P +W IK +V +R ++ N + + + LD++G I V+ +
Sbjct: 7 ITELTPKNDRWRIKVKV-----IRLWDAVNPTMVDEFYGIQMIVLDAEGNSIHVSISKQL 61
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF 337
A+ F +++ IY + K + L N+L+I ++V+
Sbjct: 62 ANHFRPKIKINSIYTFKNFKVMEHDK-YRVLKNNLKILFYHDTIVK-------------- 106
Query: 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGR-----SV 392
E +D+IG++S + P M T +++R ++R++ V
Sbjct: 107 -----------ETCLYLDVIGLLSGMKPIEQRMLGKNT-SRERVCNMREIELLLLEGEKV 154
Query: 393 ELTLWG----NFCNDDGLRLQHMCDSGVFP---ILAVKAGRVSDFNGKVVGTISTTQLFI 445
++TLWG N +DD L Q VF +L + ++ F G S+T++F+
Sbjct: 155 KITLWGDILANMVDDDLLGKQ-----TVFIATGLLVKEYEKLLSF-----GVTSSTEVFL 204
Query: 446 EPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADI-----RKTVSQIKDEGLGTKEK 500
+ + P + + E I D+ + G + RKT+ +I + ++
Sbjct: 205 DMEIPASMEILSRHNAEK--VLPTMIEVDASTQGTIEEQMFYNRKTLKEITELRYSNIQQ 262
Query: 501 PDWI-TVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYR 559
++I TV A I IK N+ Y +C C + +N + C+ C + V R
Sbjct: 263 KEFICTVKAKIEEIKSRNWWYMSCDKCF----CGTRKESNV---YICNSCGKEAVNPKPR 315
Query: 560 YILQFQIQDHTGLTWVTAFQECAEEIMG 587
Y++ +I DHT T T F E AE I G
Sbjct: 316 YVINLEISDHTTRTTCTIFNEEAERIFG 343
>gi|357450467|ref|XP_003595510.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
gi|355484558|gb|AES65761.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
Length = 549
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 79/386 (20%), Positives = 166/386 (43%), Gaps = 27/386 (6%)
Query: 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFD--LLDSDGGEIRVTCFN 275
+I I+ ++P W I+ RV L + + D + + L+D+ G I +
Sbjct: 4 KIDLISDISPSKENWNIRVRVV---RLWFVRDMKKDQLPYSLEMVLMDNKGDRINASVRR 60
Query: 276 AVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQ 335
+ ++ ++ +++ + S+ ++ + +I + ++ C DD +P
Sbjct: 61 TLIYKYEKELREDRVFSIGNFSVASNVGSYRTARHPYKINFQYGTKIKQC--DDKFVPAD 118
Query: 336 QFHF---RPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSV 392
+ R I E + + ++D++G++ + S R NG++++ + L D G
Sbjct: 119 IYVIGDSREIFQSE-YDTDYLIDVMGMLKAVGVEKSYTR-NGSQSKMIPIEL-DYDGFRF 175
Query: 393 ELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGK--VVGTISTTQLFIEPDFP 450
++TL+G + ++ L V ++AV ++ F G+ + TI+ T++ P F
Sbjct: 176 KVTLFGPYVDELNAFLASGETENV--VVAVLLTKIKIFQGQATIQNTINATKVLFNPTFT 233
Query: 451 EAHRLKE-WFEKEGKNTQSVS-ISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSA 508
A LK+ E + + +S I+ S D EGL + V
Sbjct: 234 AALLLKKRMVENDDSPSPGISKITEASKVSVEEDFLNLSPMTTVEGLKDCAEEKCFAVFG 293
Query: 509 TI-VYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQ 567
T+ V + ++ YT+C + CNKKV + + + C +C++ V+ RY+++ ++
Sbjct: 294 TVNVIVDDSDWWYTSCVV------CNKKVYPD-EKMYFCSKCNKHVLNVTPRYMIKMRVV 346
Query: 568 DHTGLTWVTAFQECAEEIMGMSAKDL 593
DHT F A E+ + D+
Sbjct: 347 DHTDSATFVLFDRDAAELFKKTCADM 372
>gi|297725599|ref|NP_001175163.1| Os07g0418100 [Oryza sativa Japonica Group]
gi|255677702|dbj|BAH93891.1| Os07g0418100 [Oryza sativa Japonica Group]
Length = 2266
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 87/185 (47%), Gaps = 15/185 (8%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFD---LLDSDGGEIRVTCFNAVA 278
IA+L P G T++ R++ E R N D + H+ L+D G I +
Sbjct: 1440 IASLEPGDGNPTLRIRISRLWEYRDQN----DESILHYIGLVLVDQKGSSIAAMIYPPCD 1495
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
++F + GK+YL++ +KP K++ + N L I S V+ C + + + +
Sbjct: 1496 NKFKPLITEGKVYLLTYYRVKPCTKHYRPVDNKLAITFTWWSTVEECVDVPDNFAQYAYS 1555
Query: 339 FRPINDVEGM--ENNSVVDLIGVVSYISPTASL-MRKNGTETQKRTLHLRDMSGRSVELT 395
+P N++ +S D+IG+++ IS ++ R ++ KR +++R+ EL
Sbjct: 1556 LKPFNELRSHVDRKDSFTDVIGIITEISSVTTVQTRIKDGDSLKRNVYIRN-----AELD 1610
Query: 396 LWGNF 400
L+ F
Sbjct: 1611 LFPKF 1615
>gi|15219131|ref|NP_175703.1| Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana]
gi|12324642|gb|AAG52278.1|AC019018_15 putative replication protein; 94555-97079 [Arabidopsis thaliana]
gi|332194750|gb|AEE32871.1| Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana]
Length = 566
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 97/443 (21%), Positives = 175/443 (39%), Gaps = 56/443 (12%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQF 281
I L P+ W I+ ++ HY +G G + L D DG +I+ +
Sbjct: 10 IKNLKPFKTSWCIQVKILHAW--NHYT--KGSGMSYEMMLADEDGNKIQAGIKKEHLLKL 65
Query: 282 YHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQ-QFHFR 340
V+ G ++ S+ A + + I + ++ + + +I +
Sbjct: 66 QRYVKIGHWTIIEEFSVTKASGLYRSTTHPYRINIQSSTR----FSNSPTISDEIWLDLV 121
Query: 341 PINDVEG--MENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
NDV ++ N +V++IG + + L+ G T+K LRD + +LWG
Sbjct: 122 NFNDVLSGTLDQNKLVNVIGQLVNVGEI-QLLDVQGKPTKKIDFQLRDTDDNRLPCSLWG 180
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTIS----TTQLFIEPDFPEAHR 454
F D + G I ++ ++ + K + +IS +++FI P E
Sbjct: 181 KFA--DQIHKVSKESVGGIVICLIRWAKLGHY--KEIRSISNAFDASEVFINPILTEVEE 236
Query: 455 LKEWFEKEG---------KNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWIT 505
K +G Q + + + + RKT++++K K +
Sbjct: 237 FKNLLPSDGLALTIMEPKPRFQPLRVREER---SKQFERKTIAELKASFEVEK-----VK 288
Query: 506 VSATIVYIKCDNFCYTACPIMIGDRPCNKKV------MNNGDGR--WHCDRCDQSVVECD 557
+ +I+ I D Y I CNKKV +++G + + CD+C V +
Sbjct: 289 IICSILSIDLDYSWYYYAHI-----KCNKKVFKSKKTLSSGAKKIIYRCDKCATDVTSIE 343
Query: 558 YRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDE--KFGEVVRNATF 615
RY L I D+TG + + F E I+G A +L + +Q DE +VV+N
Sbjct: 344 ARYWLHLDIMDNTGESKLMLFDSFVEPIIGCPATELLDVTN-EQIDEPQPLPDVVKNIIG 402
Query: 616 TKYLFKLKVKEETFS---DEQRV 635
Y F + V+++ S DE +V
Sbjct: 403 KTYQFLVCVEQDNISRGNDEYKV 425
>gi|38346787|emb|CAE02205.2| OSJNBa0095H06.12 [Oryza sativa Japonica Group]
Length = 1724
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 143/355 (40%), Gaps = 38/355 (10%)
Query: 139 DAVPAARHV-GSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAP- 196
D V AR + GSN+ + P + + S +N+ F+ R +F P YA T
Sbjct: 1156 DRVIEARIITGSNIGQTVYIPRI---TLSANNKKWPFTLQRRQF--PVRVCYAMTINKSQ 1210
Query: 197 ---------YMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMG------KWTIKARVTAK 241
Y++SP + V S V SR A + W I+AR+
Sbjct: 1211 GQSLCSVGIYLKSPIFSHGQLYVALSRVTSRAGLKMAFDLLCDISLASRGWKIRARI--- 1267
Query: 242 GELRHYNNQRGDGKVFHFDLL--DSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLK 299
+ Y D H DL+ D G + AD+F ++ K+Y S+ +
Sbjct: 1268 ARMWDYTGTANDVPPMHVDLVLVDEKGNAMYAEIPGVEADKFRPLLQESKVYTFSKFLVL 1327
Query: 300 PAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVE---GMENNSVVDL 356
P++ + N I L + V+ E A P F+ +D+ GM+ D+
Sbjct: 1328 PSKPAYKPFPNKYMIKLTPWTNVEQVNEVPADFPSHVFNLVQFSDLSQRVGMQE-YFTDV 1386
Query: 357 IGVVSYISPTASL-MRKNGTETQKRTLHLRDMSGRSVELTLWGNFCND-DGLRLQHMCDS 414
IG++ +S A + M ++T KR + LRD++ V+L LWG D D + +
Sbjct: 1387 IGMIIGVSKLAYVRMASKTSDTPKRVIALRDLANCEVKLVLWGEHALDFDADAVHSVGQD 1446
Query: 415 GVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSV 469
V ++ + G + K + S + ++ D PE + ++F+ G + +
Sbjct: 1447 NV--VVGIFVGTLMKAYNKTLSGGSACKWYLNEDIPE---INQFFDSLGDSAPKI 1496
>gi|222628302|gb|EEE60434.1| hypothetical protein OsJ_13642 [Oryza sativa Japonica Group]
Length = 479
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 104/245 (42%), Gaps = 16/245 (6%)
Query: 232 WTIKARVTAKGELRHYNNQRGDGKVFHFDLL--DSDGGEIRVTCFNAVADQFYHQVEAGK 289
W I+AR+ + Y D H DL+ D G + AD+F ++ K
Sbjct: 16 WKIRARI---ARMWDYTGTANDVPPMHVDLVLVDEKGNAMYAEIPGVEADKFRPLLQESK 72
Query: 290 IYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVE--- 346
+Y S+ + P++ + N I L + V+ E A P F+ +D+
Sbjct: 73 VYTFSKFLVLPSKPAYKPFPNKYMIKLTPWTNVEQVNEVPADFPSHVFNLVQFSDLSQRV 132
Query: 347 GMENNSVVDLIGVVSYISPTASL-MRKNGTETQKRTLHLRDMSGRSVELTLWGNFCND-D 404
GM+ D+IG++ +S A + M ++T KR + LRD++ V+L LWG D D
Sbjct: 133 GMQEY-FTDVIGMIIGVSKLAYVRMASKTSDTPKRVIALRDLANCEVKLVLWGEHALDFD 191
Query: 405 GLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGK 464
+ + V ++ + G + K + S + ++ D PE + ++F+ G
Sbjct: 192 ADAVHSVGQDNV--VVGIFVGTLMKAYNKTLSGGSACKWYLNEDIPE---INQFFDSLGD 246
Query: 465 NTQSV 469
+ +
Sbjct: 247 SAPKI 251
>gi|50838977|gb|AAT81738.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108708958|gb|ABF96753.1| hypothetical protein LOC_Os03g31560 [Oryza sativa Japonica Group]
Length = 1500
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 10/167 (5%)
Query: 234 IKARVTAKGELRHYNNQRGDGKVFHFDL--LDSDGGEIRVTCFNAVADQFYHQVEAGKIY 291
I ARV+ NN K+FH DL LD G I + + ++ ++ K+Y
Sbjct: 996 ILARVSRLWNFTDLNNH---TKIFHTDLVLLDEMGTSIHAQIYPPITEKMKPLLKEEKVY 1052
Query: 292 LVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENN 351
+ +++ A + + + N+L I + ++ P F P DV +
Sbjct: 1053 YIDSFTVRAANRTYRPVANNLMILFSKWTTLEEHINVPPHFPGITFSLTPFEDVPSLVEK 1112
Query: 352 SVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
+ ++G V+ I P + E+ KRTL +RD S ++ +TLWG
Sbjct: 1113 NSFYVVGAVTTIRP-----KSRNAESLKRTLQIRDASNSTLPVTLWG 1154
>gi|413956258|gb|AFW88907.1| hypothetical protein ZEAMMB73_503872 [Zea mays]
Length = 553
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 79/387 (20%), Positives = 156/387 (40%), Gaps = 21/387 (5%)
Query: 216 PSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFN 275
P + + L+P I+ RV K E R N G + + L D G I
Sbjct: 30 PEFVKTLKELHPQSTNVVIRVRVIRKWEFRGATND-GPLQYINLVLADEQGTPIHAEIAA 88
Query: 276 AVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQ 335
A+A +E K+Y + R + P++ F + N+ I + + ++ + PR
Sbjct: 89 ALAVDKGSLIEIEKVYELKRFRVTPSRNYFKPVDNNFMIQFTLYTQAKVVKDPPQVFPRY 148
Query: 336 QFHFRPINDVEGMENNS--VVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVE 393
+ ++E +N ++D++G+++ I+P + N T R + + + S S++
Sbjct: 149 IYKLTCFENIEDNIDNRTYLIDVLGMLTQINPPHLIGYNNSTII--RDIFIENTSDMSLK 206
Query: 394 LTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSD-FNGK-VVGTISTTQLFIEPDFPE 451
+TLWGN + + + S PI+ + G ++ F G+ + + + + + P PE
Sbjct: 207 ITLWGNQASSFSISDVYN-QSNNQPIVILLVGFLAKRFKGQPYLSSTTASSWYFNPGIPE 265
Query: 452 AHRLKEWFEKEGKNTQSVSISRDSLSVGRAD--IRKTVSQIKDEGLGTKEKPDWITVSAT 509
A + + + + + + + +KTV ++ + P+ + T
Sbjct: 266 AQTYYNRLQTNDLQLIQPTAAEEEILLSQPPNLEQKTVEELLNID-PDMFPPEGYRCTVT 324
Query: 510 IVYI-KCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQD 568
I I + + Y +C C+K G +HC C + ++RY L F D
Sbjct: 325 ISRIVQNSKWWYPSC------SRCHKSSSQTSTG-YHCTSC--GCTDINFRYKLSFIATD 375
Query: 569 HTGLTWVTAFQECAEEIMGMSAKDLYS 595
T F A +I+G +L +
Sbjct: 376 GTCEAEFFCFDSIARKIVGKPCDNLVT 402
>gi|414869783|tpg|DAA48340.1| TPA: hypothetical protein ZEAMMB73_848257 [Zea mays]
Length = 288
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 123/274 (44%), Gaps = 28/274 (10%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDL--LDSDGGEIRVTCFNAVAD 279
I L P IK V+ K R +G + H DL +D +G I +A+
Sbjct: 6 IPDLVPQNRHAVIKVYVSRKWIFR---GAMDNGPIHHIDLVLIDKEGNGISAEIPGNLAE 62
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
+ ++ +IY +SR ++ A++ F +H D I ++++ + ++ PR +H
Sbjct: 63 EKGSIIKENEIYEISRFTISSARQMFKPVHIDKMIHFTYHTIIKASLDSPSTFPRYVYHL 122
Query: 340 RPINDVEGM--ENNSVVDLIGVVSYISPTASLMRKNGTETQK-----RTLHLRDMSGRSV 392
P++ +E +N +D++GV++ +S ++ T+TQ+ + + ++D++ ++
Sbjct: 123 TPLHQIESYIQKNEYFLDVLGVITQVSA----LKPVRTQTQESSNVIKEIIIKDINDVTM 178
Query: 393 ELTLWGN----FCNDDGLR-LQHMCDSGVFPILAVKAGRVS-DFNGKVVGTISTTQLFIE 446
LTLW F DD L+ PI+ + G ++ +F G + +T + +
Sbjct: 179 RLTLWAERAKAFKLDDVYNPLEQK------PIVTLFVGCLAKNFQGAYLNGGTTCRWYFN 232
Query: 447 PDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGR 480
PD EA + F + Q S LSV +
Sbjct: 233 PDIKEAAPYYQRFGSQKIKLQIPSEQEQQLSVAK 266
>gi|297725313|ref|NP_001175020.1| Os07g0113000 [Oryza sativa Japonica Group]
gi|255677455|dbj|BAH93748.1| Os07g0113000 [Oryza sativa Japonica Group]
Length = 1790
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 80/169 (47%), Gaps = 6/169 (3%)
Query: 236 ARVTAK-GELRHYNNQRGDGKVFHFDLL--DSDGGEIRVTCFNAVADQFYHQVEAGKIYL 292
+R+ A+ L + + + K++H DL+ D GG I F + F + GK+Y
Sbjct: 1235 SRLLARVSRLWEFTDCKDATKIYHIDLVLVDEKGGSIHAQIFPPLLQVFKPLLTEGKVYY 1294
Query: 293 VSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGM--EN 350
+ +K + K++ + N L + + V+ C + + P + P+N+V +N
Sbjct: 1295 LDSYRVKTSNKSYRPVANPLMMTFTKWTSVEQCLDVPFNFPTVVYTLTPLNEVSNFVDKN 1354
Query: 351 NSVVDLIGVVSYIS-PTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
S VD+IG ++ IS PT + + KR + + D + ++ ++LW
Sbjct: 1355 ESFVDVIGFITEISTPTMLRPKSRDASSLKRIIQICDANNSTLNVSLWA 1403
>gi|356541339|ref|XP_003539135.1| PREDICTED: uncharacterized protein LOC100796376 [Glycine max]
Length = 452
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 198 MQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVF 257
+ + +++ R + G ++ + Y+ K I A + + H +G KVF
Sbjct: 249 LSAKAVWTARSMSGANKKMIEALAARKKEQYLKKEDIVADLAS-----HQGVVKGYKKVF 303
Query: 258 HFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYL 292
FD++DSDGG+I TCFN VADQFY+ +EAGK+ L
Sbjct: 304 SFDVVDSDGGQIGATCFNVVADQFYNVIEAGKVSL 338
>gi|302755953|ref|XP_002961400.1| hypothetical protein SELMODRAFT_403248 [Selaginella moellendorffii]
gi|300170059|gb|EFJ36660.1| hypothetical protein SELMODRAFT_403248 [Selaginella moellendorffii]
Length = 191
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 82/206 (39%), Gaps = 30/206 (14%)
Query: 431 NGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQI 490
NGK + + L ++P+ + L EW T V ++ S K V+ +
Sbjct: 14 NGKSISVTCGSTLLVDPELEDVSWLCEWMVASYNTTIFVHVTNSS--------SKAVTSV 65
Query: 491 KDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCD 550
K+ G +F Y AC ++ C KKV + W + CD
Sbjct: 66 KEFQTG--------------------DFYYPACVKVVNGSQCGKKVTQVSESMWQWNSCD 105
Query: 551 QSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVV 610
+ ++Y L I D T W AF + A EI+ M A + +L+ D + F V+
Sbjct: 106 TDSGDIYFKYALHLCILDSTRHIWAVAFDDAANEIVRMPACKMAALQ--DDDYTVFLAVM 163
Query: 611 RNATFTKYLFKLKVKEETFSDEQRVK 636
+ Y K+ K E++ D +++K
Sbjct: 164 DSIRSKMYNLKICYKLESYKDTEKLK 189
>gi|413948244|gb|AFW80893.1| hypothetical protein ZEAMMB73_324862 [Zea mays]
Length = 455
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 99/210 (47%), Gaps = 12/210 (5%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL--DSDGGEIRVTCFNAVA 278
PI LNP I+ RV K E R N DG + H +L+ D G I A+A
Sbjct: 5 PITELNPQKINVVIRVRVIRKWEFRGATN---DGPLRHINLILADEQGTAIHAEIPAALA 61
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
+ ++ K+Y + + P++ F +HN+L I + + ++ + P ++
Sbjct: 62 TEKGSLIQIDKVYEIRHFRVMPSRGYFKPVHNNLMIQFTLYTQAKVVNDPPHIFPIYIYN 121
Query: 339 FRPINDV-EGMEN-NSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTL 396
V E ++N N ++D+IG+++ I A + + R + ++D+S S+++TL
Sbjct: 122 LTSFQKVEENVDNRNYLIDVIGMLTQIG--APHVAGYNNSSIVRDIFIKDISDASLKITL 179
Query: 397 WGNFCNDDGLRLQHMC-DSGVFPILAVKAG 425
WG+ G + ++C +S PI+ + G
Sbjct: 180 WGD--QASGFSIDNVCNESNNKPIVIMFVG 207
>gi|296084703|emb|CBI25845.3| unnamed protein product [Vitis vinifera]
Length = 131
Score = 62.8 bits (151), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 60/116 (51%), Gaps = 9/116 (7%)
Query: 484 RKTVSQIKDEGLGTKEKPDWITVSATIVYIKCD-NFCYTACPIMIGDRPCNKKVMNN-GD 541
R ++S + ++KP + ++ A I +IK D Y AC + CNKKV G
Sbjct: 23 RVSLSHVTSNPYLGEDKPSFFSIRAYISFIKPDQTMWYRAC------KTCNKKVTGAIGS 76
Query: 542 GRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLK 597
G W C+ C ++ EC RYI+ ++ D +G W++ F E AE I G SA + LK
Sbjct: 77 GYW-CEGCQKNDDECSLRYIMVVKVSDASGEAWLSMFNEQAERIFGCSADEPDKLK 131
>gi|328857108|gb|EGG06226.1| hypothetical protein MELLADRAFT_87378 [Melampsora larici-populina
98AG31]
Length = 191
Score = 62.8 bits (151), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 3 VLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVR 62
VLQV+ LK V + QR+R+++SDG ML+TQ N L+ G+LQ +V+
Sbjct: 30 VLQVLSLKPVGVPNARAATAGPQRWRLMISDGVHFITAMLSTQLNHLIDEGMLQRMCIVK 89
Query: 63 LTKFTCNVIQNRMIVIVMDLDVIIDKC-DPIGKP 95
L +T N++ R +V+++ ++VI C IG P
Sbjct: 90 LPSYTINMVGERRVVVLLTVEVIDSTCTKKIGNP 123
>gi|70936883|ref|XP_739325.1| replication factor a protein [Plasmodium chabaudi chabaudi]
gi|56516237|emb|CAH77169.1| replication factor a protein, putative [Plasmodium chabaudi
chabaudi]
Length = 255
Score = 62.4 bits (150), Expect = 1e-06, Method: Composition-based stats.
Identities = 56/233 (24%), Positives = 111/233 (47%), Gaps = 30/233 (12%)
Query: 432 GKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGK---NTQSVSISRDSLSVGRADIRKTVS 488
GK + + T++ I+P+ +A+ LK W+ K NT +++ S + ++ + +KT+
Sbjct: 2 GKKLESHPKTKVEIDPELDKAYTLKNWWANNKKNVYNTINLATSTSNNNMLNLESQKTIQ 61
Query: 489 QIKDE-GLGTKE----KPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVM------ 537
+IK L +E K T I +I Y+ACP CNKK++
Sbjct: 62 EIKKNVNLANEEVLSGKGIIFTTFGFIDHIYNSIPVYSACP------NCNKKMVATVIED 115
Query: 538 ------NNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM-GMSA 590
N +C +C+++ + Y Y + +I D+T V+AF A+ IM G+SA
Sbjct: 116 GEQDMDENVSESMYCSKCNKNNIPV-YNYSINLKITDNTDSLRVSAFANAAKTIMNGLSA 174
Query: 591 KDLYSLK--YVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVK 641
++ L+ ++ Q + + +++ A ++ F++K + DE + T+++
Sbjct: 175 EEFMKLRQEHISQENIENFDLIEKAKLNEFFFRIKAYMTSHMDEIKKNYTILE 227
>gi|194764877|ref|XP_001964554.1| GF19997 [Drosophila ananassae]
gi|190614826|gb|EDV30350.1| GF19997 [Drosophila ananassae]
Length = 265
Score = 62.0 bits (149), Expect = 1e-06, Method: Composition-based stats.
Identities = 60/239 (25%), Positives = 105/239 (43%), Gaps = 17/239 (7%)
Query: 226 NPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQV 285
+P+ I ARV K E+ Y N+ G +F L D + GEI T N + + F+ Q+
Sbjct: 34 HPWDSTSFIIARVVHKTEITSYENET-SGNIFLIYLRD-ESGEIIATVHNELCNTFFKQI 91
Query: 286 EAGKIYLVSRGSLKPAQKNFNHLHNDLEI-FLDMTSMVQL--CYEDDASIPRQQFHFRPI 342
E ++ + + A K + + + I F T ++ + ++ +IP +++ +PI
Sbjct: 92 ETDQVCFFADFEVNWATKKYVLMPHSFNINFTQSTKVLPIGSLNQNITAIPGIRYNLQPI 151
Query: 343 NDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCN 402
+ M + VD IG+ + L ++ G ++ L D + L LW N
Sbjct: 152 EVIHKMCDGEPVDTIGICGKVD---ELAKRGGYYIREIELMDYDDYDGVITLNLW----N 204
Query: 403 DDGLRLQHMCDSGVFPILAVKAGRVSDFNGK-VVGTISTTQLFIEPDFPEAHRLKEWFE 460
D + D I+ VK RV + N K + +++ I P+ EA L+EW E
Sbjct: 205 DAAINFDGKEDD----IILVKGARVREHNLKNKINFDWFSKMEINPNIKEAKSLREWLE 259
>gi|22857582|gb|AAN09856.1| putative DNA binding protein [Oryza sativa Japonica Group]
gi|31430721|gb|AAP52594.1| hypothetical protein LOC_Os10g11780 [Oryza sativa Japonica Group]
Length = 454
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 8/161 (4%)
Query: 234 IKARVTAKGELRHYNNQRGDGKVFHFDL--LDSDGGEIRVTCFNAVADQFYHQVEAGKIY 291
I ARV+ L ++ + D K+FH DL LD G I + + ++ ++ K+Y
Sbjct: 18 IHARVS---RLWNFTDLNDDTKIFHTDLVLLDEIGTSIHAQIYPPITEKMKPLLKEEKVY 74
Query: 292 LVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGM--E 349
+ +++ A + + + N+L I + ++ P F P DV + +
Sbjct: 75 YIDSFTIRAANRTYRPVANNLMILFSKWTTLEEHINVPPHFPSITFSLTPFEDVPSLVEK 134
Query: 350 NNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSG 389
N+ VD++GV++ + ++ K+ E+ KRTL +RD S
Sbjct: 135 NSFYVDIMGVITEVGAVTTIRPKSRNAESLKRTLQIRDASA 175
>gi|115436702|ref|NP_001043109.1| Os01g0390300 [Oryza sativa Japonica Group]
gi|55297220|dbj|BAD68984.1| DNA binding protein-like [Oryza sativa Japonica Group]
gi|113532640|dbj|BAF05023.1| Os01g0390300 [Oryza sativa Japonica Group]
gi|215736912|dbj|BAG95841.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767124|dbj|BAG99352.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 185
Score = 62.0 bits (149), Expect = 1e-06, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 8/160 (5%)
Query: 234 IKARVTAKGELRHYNNQRGDGKVFHFDL--LDSDGGEIRVTCFNAVADQFYHQVEAGKIY 291
IKARV+ + + Y++ + K++H DL LD G I V + + ++ GK+Y
Sbjct: 18 IKARVSRQWD---YHDLNDETKIYHTDLVLLDEKGNSIHVQIYPPAMIKLRTLLQEGKVY 74
Query: 292 LVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGM--E 349
S++ A + + + N L I + ++ C + P F P D +
Sbjct: 75 YFDSFSVRYANRTYRPVTNPLMISFTKWTTLEECIDAFDDFPAITFSLTPFQDAPSLVDR 134
Query: 350 NNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMS 388
N VD++GV++ I T +L K+ TET KRT+ + D S
Sbjct: 135 NAFYVDIMGVITEIGATDTLRPKSRNTETLKRTMQIWDAS 174
>gi|413934866|gb|AFW69417.1| hypothetical protein ZEAMMB73_473384 [Zea mays]
Length = 317
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 104/240 (43%), Gaps = 14/240 (5%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL--DSDGGEIRVTCFNAVA 278
PIA L+P I+ R+ K E R N DG + H +L+ D G I A+
Sbjct: 5 PIAELDPKSTNAAIRVRIIRKWEFRGATN---DGPLRHVNLILADEQGTAIHAEIQAALV 61
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
++ K+Y + R + P++ + + N + I + + +L + + PR +
Sbjct: 62 ADKGSLIQIDKVYELKRFRVAPSRNYYKPVDNSMMIQFTLYTQAKLVQDPPPTFPRYAYK 121
Query: 339 FRPINDVEGMENNS--VVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTL 396
++ +N ++D++G+++ I + N R + L+D++ S ++TL
Sbjct: 122 LTSFENIGNNVDNKTYLIDVLGILTEIGSLHHVGYNNSNII--RDIFLKDINNTSTKVTL 179
Query: 397 WGNFCNDDGLRLQHMCDSG-VFPILAVKAGRVSD-FNGKV-VGTISTTQLFIEPDFPEAH 453
WG+ + + CD P++ + G ++ F G+ + + + PD PEA
Sbjct: 180 WGH--QASSFSVDNNCDENDNKPVVVLFVGCLAKRFKGEAYLSATAACTWYFNPDIPEAQ 237
>gi|284434672|gb|ADB85379.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 305
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 101/242 (41%), Gaps = 19/242 (7%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL--DSDGGEIRVTCFNAVAD 279
++ +NP WT+ ARV+ L Y D ++ H DL+ D G I +
Sbjct: 6 LSEINPTSKHWTVCARVS---RLWEYRGNVDDAEIQHLDLVLVDEQGNAIYAEIPKEHVE 62
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
++ IY R + P + + + +D I + + ++ ++ + P +
Sbjct: 63 AKRVLLQEEHIYTFRRFLVSPNKGKYRPVDSDYMIEIGYYTEIEELFDAAPTFPMYAYTL 122
Query: 340 RPINDVEGM--ENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVELTL 396
P+ +++ E + +D+IGVV +S AS+ N + T KR + ++D +TL
Sbjct: 123 TPLENLDSYIGETRNFLDVIGVVKAVSNAASIQGSNQSSTTTKRLVVIKDAKDCETTVTL 182
Query: 397 WGNFCND-DGLRLQHMCDSGVFP-----ILAVKAGRVSDFNGKVVGTISTTQLFIEPDFP 450
WG D DG + P IL + G+ +G S + +I P+ P
Sbjct: 183 WGQRAKDFDGEYVYEKEQKNPVPALFVGILMKRYGQNEGLSGG-----SACRWYISPNIP 237
Query: 451 EA 452
EA
Sbjct: 238 EA 239
>gi|3695387|gb|AAC62789.1| contains similarity to replication protein A1 [Arabidopsis
thaliana]
gi|10177641|dbj|BAB10788.1| replication protein A1-like [Arabidopsis thaliana]
Length = 1073
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 88/423 (20%), Positives = 160/423 (37%), Gaps = 79/423 (18%)
Query: 269 IRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNF---NHLHNDLEIFLDMTSMVQLC 325
+ T + +F H++ G+ + L A F NHL+ ++ + + V C
Sbjct: 1 MHATVKKELVSKFVHKLIVGEWVFIEIFRLTYASSQFRPTNHLY---KMAFQVRTEVMGC 57
Query: 326 YEDDASIPRQQF-HFRPINDVEGMENNS--VVDLIGVVSYISPTASLMRKNGTETQKRTL 382
AS+ F P + ++ E N +VD IG + + L N T K
Sbjct: 58 ----ASVSDSNFLTLAPFSKIQSGELNPHMLVDAIGQIITVGELEEL-EANNKPTTKIDF 112
Query: 383 HLRDMSGRSVELTLWGNFCNDDGLRLQHMC--DSGVFPILAVKAGRVSDFNG-------- 432
+RD +++TLWG + ++ C G I ++ ++ + G
Sbjct: 113 EIRDQMDERMQVTLWGTYAQ----QVYRACQESEGKNVIFLIRFAKIKSYKGIFSFFVPI 168
Query: 433 ---------------------KVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSI 471
+ + +Q+ + PDFPEAH + +G ++ +
Sbjct: 169 PFLSILHDLWSLKCYETAGVKSLSNSFDASQVHVNPDFPEAHHFSQTLPNDG----AICV 224
Query: 472 SR------DSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCD-NFCYTACP 524
R + ++V R D ++ L + E + V TI I D + Y +C
Sbjct: 225 YRTRVPRFEMVAVKRIDYSVYTRNTIEDLLSSTEVGK-VRVLCTIYAIDTDWAWYYISC- 282
Query: 525 IMIGDRPCNKKVMN--------NGDGR---WHCDRCDQSVVECDYRYILQFQIQDHTGLT 573
+ CNKKV + N G+ + CD C V RY++ ++ D T
Sbjct: 283 -----KTCNKKVNHIHAGVNGVNNKGKKPKFWCDTCKSVVTNVVSRYMIYAKVMDSTSEA 337
Query: 574 WVTAFQECAEEIMGMSAKDLYSLKYVDQND-EKFGEVVRNATFTKYLFKLKVKEETFSDE 632
+ F EI+G SA + + + D E + V+N +LF + V+++ SD
Sbjct: 338 KLVLFDSICFEIIGESATSVLNGSVNEIEDPEDLPDSVKNLIGKTFLFLVWVEKDNISDG 397
Query: 633 QRV 635
+ +
Sbjct: 398 KEI 400
>gi|413943162|gb|AFW75811.1| hypothetical protein ZEAMMB73_150897 [Zea mays]
Length = 228
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 104/244 (42%), Gaps = 36/244 (14%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL--DSDGGEIRVTCFNAVA 278
PI LNP I+ RV K E R N DG + H +L+ D G I A+A
Sbjct: 5 PITELNPQKINVVIRVRVIRKWEFRGATN---DGPLRHINLILADEQGTTIHAEIPAALA 61
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
+ ++ K+Y + + P++ F +HN+L M+Q A + H
Sbjct: 62 TEKGSLIQIDKVYEIRHFRVMPSRGYFKPVHNNL--------MIQFTLYTQAKVVNDPPH 113
Query: 339 FRPI-----NDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVE 393
PI E +E N + L+ + R + ++D+S S++
Sbjct: 114 IFPIYIYNLTSFEKVEEN-----------VDNRNYLIAGYNNSSIVRDIFIKDISDASLK 162
Query: 394 LTLWGNFCNDDGLRLQHMCD-SGVFPILAVKAGRVS-DFNGK--VVGTISTTQLFIEPDF 449
+TLWG+ G + ++C+ S PI+ + G ++ F G+ + GT +TT F P+
Sbjct: 163 ITLWGD--QASGFSIDNVCNQSNNKPIVIMFVGCLAKQFKGQSYLSGTTATTWYF-NPNI 219
Query: 450 PEAH 453
PEA
Sbjct: 220 PEAQ 223
>gi|115477364|ref|NP_001062278.1| Os08g0522100 [Oryza sativa Japonica Group]
gi|113624247|dbj|BAF24192.1| Os08g0522100 [Oryza sativa Japonica Group]
Length = 1578
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/349 (22%), Positives = 149/349 (42%), Gaps = 31/349 (8%)
Query: 256 VFHFD--LLDSDGGEIRVTCFNAVADQFYHQVEAGKIYL-VSRGSLKPAQKNFNHLHNDL 312
+F+ D +LD +G ++ T + ++F + G +Y+ V ++ K + + H
Sbjct: 858 IFNIDGVILDEEGTMVQFTIPKKLENEFRPSLTLGCVYMFVDVNTVDIKNKKYIYHHQKY 917
Query: 313 EIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNS--VVDLIGVVSYISPTASLM 370
+ ++ V +SIP F F P + + S ++DLIGV+S++ P
Sbjct: 918 MLQFKSSTKVHHLESRGSSIPNYGFEFCPFDQIPSKSGISKPLIDLIGVISHVGPYDYAG 977
Query: 371 RKNGTETQKRTLHLRDMSGRSVELTLWGNF--CNDDGLRLQHMCDSGVFPILAVKAGRVS 428
+ + + +K L +R + E+ LWG + D+ LQ D + ++A+ AG +
Sbjct: 978 KTSSKKNRK--LKIRSKDEQEQEIVLWGEYGGSFDEAFVLQKSTDHKI--VVAILAGLTA 1033
Query: 429 -DFNGKVVGTIST-TQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLS----VGRAD 482
+ GK T S+ TQ++ + D E + ++ + Q + L+ G+
Sbjct: 1034 GTYLGKTEATSSSATQIYFDSDITEIAEYQSSYQWDIPTLQQQMPRVEHLTPLQAAGKLY 1093
Query: 483 IRKTVSQIKDEGL-GTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGD 541
+ +S++ G VSA + Y N+ Y C + C +N D
Sbjct: 1094 KLEEISRLPISAFEGGNSYSCIAKVSAIVPYT---NWYYKIC------KSCTASYNSNSD 1144
Query: 542 GRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSA 590
C +C S+ + Y+ L I+D +G AF AE+++ ++A
Sbjct: 1145 TP-RC-QCQHSMPKPMYK--LPLTIKDESGTLDAVAFYNVAEDLVEVNA 1189
>gi|57899172|dbj|BAD87224.1| DNA binding protein-like [Oryza sativa Japonica Group]
gi|57900302|dbj|BAD87135.1| DNA binding protein-like [Oryza sativa Japonica Group]
Length = 609
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 90/389 (23%), Positives = 156/389 (40%), Gaps = 54/389 (13%)
Query: 266 GGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLC 325
G I V + + + GKIY + ++K A + + + ND I + ++ C
Sbjct: 36 GNSIHVQMYRGAIEVLKPLIHEGKIYYIESFTVKDANRTYRPVSNDFMILFSKWTTLEEC 95
Query: 326 YEDDASIPRQQF---HFRPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRT 381
+ A P F HF+ I + G +N VD++GV++ IS T+ + R ++ KRT
Sbjct: 96 IDIPADFPTITFSLTHFQEIPSLVG-KNIFYVDIMGVITEISSTSIVRPRSRDADSLKRT 154
Query: 382 LHLRDM-----------SGRSVELTLWGNFCND-DGLRLQHMCDSGVFPILAVKAGR-VS 428
L + D S ++ +TLWG+ D ++ D P + V G V
Sbjct: 155 LQICDASYTNFTVNAKHSNSTLPVTLWGDRSTAFDAEKIYK--DGQTKPQVVVFVGTLVR 212
Query: 429 DFNG---KVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADI-- 483
D+ G + G+ S + +I D P+ +LKE F N Q + ++ D
Sbjct: 213 DYAGIGLTITGS-SPCKWYINLDIPDVLKLKESF---SVNFQPIKWVENAAPAFNQDTPE 268
Query: 484 RKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDN-FCYTACPIMIGDRPCNKKVMNNGDG 542
KT+ +I ++ +I V+ TI I +N + Y +C DR C +
Sbjct: 269 EKTIKEILKLNPHKYKRARFI-VNVTIKSIHDENCWWYNSC-----DRCC--RTSKPYGS 320
Query: 543 RWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQN 602
+ C C + RY + D+T F A ++ + L +++N
Sbjct: 321 TYRCSSCCYIGMPVP-RYKVVLTTADNTSEAAFVLFGRIAHRLIHRPVESL-----IEEN 374
Query: 603 DEKF--GEV--------VRNATFTKYLFK 621
F E+ V N +FT++ K
Sbjct: 375 PPDFIPAEIQALVDQAFVWNVSFTEHTVK 403
>gi|413922380|gb|AFW62312.1| hypothetical protein ZEAMMB73_585961 [Zea mays]
Length = 482
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 284 QVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPIN 343
+++ KI ++ + + A+ +F +H I L ++++ ED P+ FH P
Sbjct: 16 RLQESKILIMRKIYVDNAKLSFKPVHGKYMIRLHPKTLLEEVNEDPQDFPKYTFHLTPFP 75
Query: 344 DVEGMENNS--VVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
++ +E N+ +D+IG ++ +S +G KR +HL D+ G +E++LWG
Sbjct: 76 ELPQLEGNNEYFIDVIGCITALSDATPFQTSSGIVRMKRLIHLVDLRGNKIEVSLWG 132
>gi|357441137|ref|XP_003590846.1| Replication factor A protein [Medicago truncatula]
gi|355479894|gb|AES61097.1| Replication factor A protein [Medicago truncatula]
Length = 513
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 154/354 (43%), Gaps = 49/354 (13%)
Query: 232 WTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIY 291
W IK RV E+ + N V G +I + F ++ GK+Y
Sbjct: 18 WKIKVRVLRLWEVPAFLNPDQTNSV-------EMGTKIHAGVRKQLLYVFQSKLSEGKVY 70
Query: 292 LVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDV--EGME 349
+S S+ P+ ++ + +I MT+ VQ+C +DASIP I DV +
Sbjct: 71 QMSCFSVAPSVGSYRTTSHPYKIVFQMTTKVQVC--EDASIPSFGISLCKIVDVCQHTSD 128
Query: 350 NNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQ 409
++ +VD++G ++ IS +R +G T+ + D SG+ E L+G + D L
Sbjct: 129 HDYLVDVLGFMTDISAEREYVR-DGKVTKMVVFEITDASGKC-ECALFGQYV--DTLNKL 184
Query: 410 HMCDSGVFPILAVKAGRVSDFNGK--VVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQ 467
+G PI+ V+ +V F K + I+TT + I + P E++ + +
Sbjct: 185 MGKSAGGMPIILVQFAKVKIFRDKASLQNVINTTWILI--NLP--------IEQDDQVRK 234
Query: 468 SVSI-SRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSAT------IVY------IK 514
SV+ S D S+ R R VS ++++ L T K + +T +VY +
Sbjct: 235 SVTFGSTDVSSIPRIGSRSKVS-LEEDFLRTYPKKTLEQLHSTFDDGVFVVYSTISGLVD 293
Query: 515 CDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQD 568
+++ Y AC C++ V + G ++C C + V + R+ ++ + D
Sbjct: 294 HEDWWYPAC-------KCHRSVSADS-GAFYCKGCAKHVFQMVPRFRVKVNVSD 339
>gi|302783422|ref|XP_002973484.1| hypothetical protein SELMODRAFT_413871 [Selaginella moellendorffii]
gi|300159237|gb|EFJ25858.1| hypothetical protein SELMODRAFT_413871 [Selaginella moellendorffii]
Length = 259
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 358 GVVSYISPTASLMRKNGTETQ-KRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGV 416
G V S + + R N T + T ++ G SV+L LW ++G +Q DSGV
Sbjct: 45 GTVYSFSGSGGIRRSNQAYTPFEATWEIQANKGHSVDLCLWDLKAEEEGSYIQ---DSGV 101
Query: 417 FPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDS 475
PI+ VK G+V D+NGK + I + + IEP+ L+EW T + +S S
Sbjct: 102 QPIICVKGGKVLDYNGKSLSAIGVSTILIEPEMEAMADLREWMTLYYNVTNFIHLSTSS 160
Score = 47.8 bits (112), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 562 LQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFK 621
L+ I+D + W AFQE A+EI+GM AK+L +++ D+N F + Y FK
Sbjct: 179 LKMCIEDSSSHVWAIAFQEAAQEIVGMPAKELATMQ--DENYLAFSLHIDGICSKIYNFK 236
Query: 622 LKVKEETFSDEQRVKSTVV 640
++ K E + D ++++ ++
Sbjct: 237 IRSKLEKYQDMEKLRFYIL 255
>gi|343957969|emb|CCA30601.1| replication factor A protein 1 homolog, partial [Glomus etunicatum]
Length = 181
Score = 61.2 bits (147), Expect = 2e-06, Method: Composition-based stats.
Identities = 53/217 (24%), Positives = 91/217 (41%), Gaps = 42/217 (19%)
Query: 433 KVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSI-SRDSLSVGRADIRKTVSQIK 491
K + T ++T L P PEA L EW+ G + S+ S+ S+ + +K++ +IK
Sbjct: 1 KGLSTTNSTVLITNPSLPEATELSEWYSTGGSQLEFNSLASQTGGSINIKEAQKSLEEIK 60
Query: 492 -DEGLGTKE---KPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCD 547
D+ LG K+ K ++ V+ V I N
Sbjct: 61 SDKTLGLKKILAKRKYLEVAIIGVVIDVQNH----------------------------- 91
Query: 548 RCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFG 607
+ YRYIL +I DH+ W+ F E A I+GM A D L+ +D +
Sbjct: 92 ------LTPTYRYILPIRITDHSDSVWMNCFDETAALILGMPADDFRKLRDIDPYG--YE 143
Query: 608 EVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAER 644
++N ++ K++ + +TF+++ V +V R
Sbjct: 144 NHIKNQLWSLTYLKVRTQLKTFNEKTVVNYNLVAIFR 180
>gi|115440927|ref|NP_001044743.1| Os01g0838100 [Oryza sativa Japonica Group]
gi|56784643|dbj|BAD81690.1| helicase-like protein [Oryza sativa Japonica Group]
gi|113534274|dbj|BAF06657.1| Os01g0838100 [Oryza sativa Japonica Group]
Length = 474
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 114/278 (41%), Gaps = 16/278 (5%)
Query: 225 LNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDL--LDSDGGEIRVTCFNAVADQFY 282
++P W I+A++ + Y D H DL +D G + AD+F
Sbjct: 48 ISPASRGWKIRAKI---ARMWDYTGTADDLPPIHVDLVLIDEKGNAMYAEIPGVEADKFR 104
Query: 283 HQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH---F 339
++ K+Y S+ + P++ + N I L + V+ E A P F+ F
Sbjct: 105 PLLQESKVYTFSKFLILPSKPAYKPFPNKYMIKLTPWTNVEQVNEVPADFPSHVFNLVQF 164
Query: 340 RPINDVEGMENNSVVDLIGVVSYISPTASL-MRKNGTETQKRTLHLRDMSGRSVELTLWG 398
++ GM+ D+IG++ +S A + M ++T KR + LRD++ V+L LWG
Sbjct: 165 SYLSLRVGMQEY-FTDVIGMIIGVSKLAYVRMASKTSDTPKRVIALRDLANCEVKLVLWG 223
Query: 399 NFCNDDGLRLQHMC--DSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456
D H D+ V I + + N + + S + ++ D PE ++
Sbjct: 224 EHAPDFDADAVHSVGQDNAVVGIFVDTLMKAYN-NEETLSGGSACKWYLNEDIPEINQFF 282
Query: 457 EWFEKEGKNTQSVSISRDSLSVGRADIR---KTVSQIK 491
+ Q +S +S + R K+V+ +K
Sbjct: 283 DSLGDSAPKIQWISTGAESFGSSQRPARLEHKSVADLK 320
>gi|302823631|ref|XP_002993466.1| hypothetical protein SELMODRAFT_431543 [Selaginella moellendorffii]
gi|300138703|gb|EFJ05461.1| hypothetical protein SELMODRAFT_431543 [Selaginella moellendorffii]
Length = 148
Score = 60.8 bits (146), Expect = 3e-06, Method: Composition-based stats.
Identities = 48/197 (24%), Positives = 73/197 (37%), Gaps = 51/197 (25%)
Query: 394 LTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAH 453
+ LW + D+G ++ G PI+ VK ++SD+NG DF
Sbjct: 1 MCLWDSEAEDEGSEIKEKPGQGERPIVCVKGSQISDYNGN--------------DF---- 42
Query: 454 RLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYI 513
W+ + LS+ L E V ++
Sbjct: 43 ----WYN-------------EMLSIN---------------LKVSEFSAIFHVIVSVKEF 70
Query: 514 KCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLT 573
+ +F Y AC ++ R C KKV + W C+ CD + ++Y L I D TG
Sbjct: 71 QTGDFYYPACMKVVNGRQCGKKVTQVSESMWQCNSCDTDFGDIHFKYALHLCILDSTGHI 130
Query: 574 WVTAFQECAEEIMGMSA 590
W AF + A EI+ M A
Sbjct: 131 WAVAFDD-ANEIVEMPA 146
>gi|226508478|ref|NP_001142593.1| uncharacterized protein LOC100274860 [Zea mays]
gi|195607088|gb|ACG25374.1| hypothetical protein [Zea mays]
Length = 549
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 91/431 (21%), Positives = 175/431 (40%), Gaps = 48/431 (11%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSD--GGEIRVTCFNAVAD 279
+ L P+ TI+ VT K R N+ + + H D++ SD G I +A+
Sbjct: 6 LTDLEPHKKHATIQVCVTRKWLFRGAND---NAPLQHVDMILSDQKGNAIYAEIPANLAN 62
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
Q +E G+IY +SR + A+ F + D I ++V+ + P+ +
Sbjct: 63 QKAPDIEEGRIYNISRFRVCAAKNGFKVVDGDKMIQFTFYTIVKRVIDPPTVFPKYIYRL 122
Query: 340 RPINDVEG--MENNSVVDLIGVVSYISPTASL-MRKNGTETQKRTLHLRDMSGRSVELTL 396
P + +E + +D++GV+ + + ++ R++ + D+S +++TL
Sbjct: 123 TPFDQIESNIQTKPNFLDVLGVIIQVHELTPIHIQSQLNPVLTRSIIIEDLSNTPLKITL 182
Query: 397 WGNFCNDDGLRLQHMCDSGV-FPILAVKAGRVSDF-NGKVVGTISTTQLFIEPDFPEAHR 454
W + L + D PI+ + G + F G + S + + P PEA
Sbjct: 183 WAD--QATSFSLHDVYDPNTKKPIIVLFVGCLPKFYKGVYLSGGSACRWYFNPTIPEA-- 238
Query: 455 LKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITV-------- 506
E + Q+ +I +L + A + K E +K D I +
Sbjct: 239 -----EPYHTSQQTRTI---ALQLPHALNHPPTIENK-EAAESKSLYDLIRINPYDFPEI 289
Query: 507 ----SATIVYIKCDN-FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYI 561
+ TI I +N + Y AC K + +HC+ C+ + +RY
Sbjct: 290 GYECTVTITEIPVENKWWYPACTKCF-------KASTPQNTVYHCNDCNWD--KYTFRYK 340
Query: 562 LQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFK 621
L+F D T + F A +I+G S + + L+ V ++ ++ + + K+ F+
Sbjct: 341 LKFLASDGTETAEMFCFNNIARQIVGKSREVV--LRGVSEHSSIPPDLAQIISL-KFTFR 397
Query: 622 LKVKEETFSDE 632
+ V +++F E
Sbjct: 398 VTVDDQSFFQE 408
>gi|413933201|gb|AFW67752.1| hypothetical protein ZEAMMB73_289207 [Zea mays]
Length = 217
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 98/210 (46%), Gaps = 12/210 (5%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL--DSDGGEIRVTCFNAVA 278
PI LNP I+ RV K E R N DG + H +L+ D G I A+A
Sbjct: 5 PITELNPQKINVVIRVRVIRKLEFRGATN---DGPLRHINLILADEQGTAIHAEIPAALA 61
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
+ ++ K+Y + + P++ F +HN+L I + + ++ + P ++
Sbjct: 62 IEKGSLIQIDKVYEIRHFRVMPSRGYFKPVHNNLMIQFTLYTQAKVVNDPPHIFPIYIYN 121
Query: 339 FRPINDV-EGMEN-NSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTL 396
V E ++N N ++D+IG+++ I N + R + ++D+S S+++TL
Sbjct: 122 LTSFEKVEENVDNRNYLIDVIGMLTQIGAPHVAGYNNSSIV--RDIFIKDISDASLKITL 179
Query: 397 WGNFCNDDGLRLQHMC-DSGVFPILAVKAG 425
WG+ G + ++C +S PI+ + G
Sbjct: 180 WGD--QASGFSIDNVCNESNNKPIVIMFVG 207
>gi|414883616|tpg|DAA59630.1| TPA: hypothetical protein ZEAMMB73_011121 [Zea mays]
Length = 289
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 110/248 (44%), Gaps = 32/248 (12%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL--DSDGGEIRVTCFNAVA 278
PI L+P I+ RV K E R N DG + H +L+ D G I A+A
Sbjct: 5 PITELDPRNINVVIRVRVIRKWEFRGATN---DGPLRHINLILADEQGTAIHAEIPAALA 61
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
+ ++ K+Y + R + ++ F + N+L M+Q A + + H
Sbjct: 62 TEKGSLIQIEKVYEIRRFRVVSSRSYFKPVQNNL--------MIQFTLYIQAKVVKDPPH 113
Query: 339 FRPI-----NDVEGME-----NNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMS 388
PI E +E N ++D IG+++ I N + R + ++++S
Sbjct: 114 IFPIYIYNLTSFEKIEESVDNKNYLIDAIGMLTQIGAPHVAGYNNSSIV--RDIFIKNIS 171
Query: 389 GRSVELTLWGNFCNDDGLRLQHMCDSG-VFPILAVKAGRVS-DFNGK--VVGTISTTQLF 444
S+++TLWG+ G ++C+ G PI+ + G ++ F G+ + GT +TT F
Sbjct: 172 DASLKITLWGD--QASGFSTDNVCNQGNNKPIVIMFFGCLAKQFKGQSYLSGTAATTWYF 229
Query: 445 IEPDFPEA 452
PD PEA
Sbjct: 230 -NPDIPEA 236
>gi|357441153|ref|XP_003590854.1| Replication factor A protein [Medicago truncatula]
gi|355479902|gb|AES61105.1| Replication factor A protein [Medicago truncatula]
Length = 518
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 85/354 (24%), Positives = 154/354 (43%), Gaps = 49/354 (13%)
Query: 232 WTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIY 291
W IK RV E+ + N V G +I + F ++ GK+Y
Sbjct: 18 WKIKVRVLRLWEVPAFLNPDQTNSV-------EMGTKIHAGVRKQLLYVFQSKLSEGKVY 70
Query: 292 LVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDV--EGME 349
+S S+ P+ ++ + +I MT+ VQ+C +DASIP I DV +
Sbjct: 71 QMSCFSVAPSVGSYRTTSHPYKIVFQMTTKVQVC--EDASIPSFGISLCKIVDVCQHTSD 128
Query: 350 NNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQ 409
++ +VD++G ++ IS +R +G T+ + D SG+ E L+G + D L
Sbjct: 129 HDYLVDVLGFMTDISAEREYVR-DGKVTKMVVFEITDASGKC-ECALFGQYV--DTLNKL 184
Query: 410 HMCDSGVFPILAVKAGRVSDFNGK--VVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQ 467
+G P++ V+ +V F K + I+TT + I + P E++ + +
Sbjct: 185 MGKSAGGMPMILVQFAKVKIFRDKASLQNVINTTWILI--NLP--------IEQDDQVRK 234
Query: 468 SVSI-SRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSAT------IVY------IK 514
SV+ S D S+ R R VS ++++ L T K + +T +VY +
Sbjct: 235 SVTFGSTDVSSIPRIGSRSKVS-LEEDFLRTYPKKTLEQLHSTFDDGVFVVYSTISGLVD 293
Query: 515 CDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQD 568
+++ Y AC C++ V + G ++C C + V + R+ ++ + D
Sbjct: 294 HEDWWYPAC-------KCHRSVSADS-GAFYCKGCAKHVFQMVPRFRVKVNVSD 339
>gi|414589506|tpg|DAA40077.1| TPA: hypothetical protein ZEAMMB73_356509 [Zea mays]
Length = 388
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 86/188 (45%), Gaps = 9/188 (4%)
Query: 216 PSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL--DSDGGEIRVTC 273
P + + L+P I+ RV K E R N DG + H +L+ D G I
Sbjct: 31 PEFVKTLKELHPQSTNAIIRVRVIRKWEFRGATN---DGPLQHINLVLADEQGTPIHAEI 87
Query: 274 FNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIP 333
A+A +E K+Y + R + P++ F + N+ I + + ++ + P
Sbjct: 88 AAALAVDKGSMIEIEKVYELKRFRVTPSRNYFKPVDNNFMIQFTLYTQAKVVKDPPQVFP 147
Query: 334 RQQFHFRPINDVEGMENNS--VVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRS 391
R + ++E +N ++D++G+++ I+P + N T R + +++ S S
Sbjct: 148 RYIYKLTCFENIEDNIDNRTYLIDVLGMLTQINPPHLIGYNNSTII--RDIFIKNTSDMS 205
Query: 392 VELTLWGN 399
+++TLWGN
Sbjct: 206 LKITLWGN 213
>gi|449017074|dbj|BAM80476.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 359
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 46/83 (55%), Gaps = 15/83 (18%)
Query: 744 CSSCGAVGHSSMNCPSIMS--------GPGQSSGGGYANSFSSGAGIATSSECYKCHKTG 795
C +CG VGH+S CPS GPG S GY S+G G T S C+KC ++G
Sbjct: 52 CYNCGGVGHTSRECPSERGVRGNMGDRGPGSSGPRGYP---STGRGAETRS-CFKCGESG 107
Query: 796 HWARDCPSLNAAPP---AYGSSG 815
H AR CP+ +AA P AYGS G
Sbjct: 108 HLARFCPTTSAAGPDGNAYGSRG 130
>gi|402225049|gb|EJU05111.1| hypothetical protein DACRYDRAFT_98791 [Dacryopinax sp. DJM-731 SS1]
Length = 504
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 87/424 (20%), Positives = 171/424 (40%), Gaps = 54/424 (12%)
Query: 234 IKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLV 293
+ AR++ K + YN Q G G+V + DS G+I FN+ A + + +E+G++Y +
Sbjct: 98 LVARLSGKDTVHAYNTQNGKGRVHNLTFHDS-MGKIGAVAFNS-ATEVTNSLESGQVYSI 155
Query: 294 SRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSV 353
++ A+ +N + ++ + M + +L D +P P + M ++ +
Sbjct: 156 CNATVCIAKAAYNKTLSLFQLTISMNTEFELVQNFD--LPIHYLDIVPFAKIADMGSDDI 213
Query: 354 VDLIGVVSYI------SPTAS-LMRKNGTETQKRTLHLRDMSGRSVELTLWGN----FCN 402
D+ +V + P+ S L+ K T +K +H+ D S + L W F N
Sbjct: 214 CDIHAIVVTVGAGICCKPSHSELLAKEVTYFRK--IHIVDQSSVMLCLCTWQELGEVFKN 271
Query: 403 DDGLRLQHMCDSGVFPILAVKAGRVSDFNG-KVVGTISTTQLFIEPDFPEAHRLKEWFEK 461
+G +++ + +G +V T + D P+ L+ W+E
Sbjct: 272 HEG------------EAVSINNLQWDYHDGPSLVTAGKCTHIHFNDDDPDHQALQLWYE- 318
Query: 462 EGKNTQSVSISRDSLSVG-----------RADIRKTVSQIKDEGLGTKEKPDWITVSATI 510
E TQ + + + G + I++ +S + G K D + AT
Sbjct: 319 ENLETQWTLLLGHTTAAGAQLTNTAPPRDKLCIKEVLSCV-----GKKLDIDTFALVATC 373
Query: 511 VYIKCDNFCYTACPIMIGDRPCNK--KVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQD 568
+ + Y AC D+ C+K K + W+C C+ + Y LQ + +
Sbjct: 374 KILLLKDIGYYACM----DKHCHKAAKCVAGTLHLWNCPHCNTRFTKPHSIYCLQLHLDN 429
Query: 569 HTGLTWVTAFQECAEEIMGMSAKDLYSLKY-VDQNDEKFGEVVRNATFTKYLFKLKVKEE 627
T VT F ++ G A L++ ++ D ++ + V + KY F ++
Sbjct: 430 GTRECVVTTFDFIRCQLFGDWAVMLWNQQHSADPDEHTVFQAVLDQVAGKYSFTIQANTV 489
Query: 628 TFSD 631
+++
Sbjct: 490 CYTN 493
>gi|433639732|ref|YP_007285492.1| single-stranded DNA-binding protein [Halovivax ruber XH-70]
gi|433291536|gb|AGB17359.1| single-stranded DNA-binding protein [Halovivax ruber XH-70]
Length = 486
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 18/184 (9%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
+ AL + T+ V G +R ++ G +GKV + L D + G +RVT ++ AD
Sbjct: 174 VEALTIGLSDVTLVGEVLETGSIRTFDRDDGSEGKVSNLTLGD-ETGRVRVTLWDEQAD- 231
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
+++ ++ V G +K N LE+ + V++ ED +P
Sbjct: 232 LATEIDDSEVVEVVDGYVKERDGN-------LELHVGNQGTVEVVDEDVQYVPDST---- 280
Query: 341 PINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNF 400
PI DVE + VDL GVV P + R +G+E Q R + ++D +G + + LWG
Sbjct: 281 PIEDVE---IDQTVDLKGVVRSADPVRTFDRDDGSEGQVRNIRVQDATG-DLRVALWGEK 336
Query: 401 CNDD 404
+ D
Sbjct: 337 ADID 340
Score = 47.8 bits (112), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 91/191 (47%), Gaps = 25/191 (13%)
Query: 210 VGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHY--NNQRGDGKVFHFDLLDSDGG 267
VG+SEV IA + P M + A+VT GE++ + + DG+V + D+ D G
Sbjct: 58 VGESEVGG----IADIEPGMEEVKFVAKVTNVGEVKTFEREGEDDDGRVVNVDVADETGA 113
Query: 268 EIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE 327
+R+T ++ A ++EAG++ + +G K ++ +E+ +D + +
Sbjct: 114 -VRITFWDERAVAAVEELEAGQVLRI-KGRPKDG-------YSGVEVNVD-----EAQPD 159
Query: 328 DDASIPRQQFHFRPINDVEGMENN-SVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRD 386
DD I + + + VE + S V L+G V + R +G+E + L L D
Sbjct: 160 DDTEI---EVNVSDTHTVEALTIGLSDVTLVGEVLETGSIRTFDRDDGSEGKVSNLTLGD 216
Query: 387 MSGRSVELTLW 397
+GR V +TLW
Sbjct: 217 ETGR-VRVTLW 226
>gi|38424033|dbj|BAD01693.1| DNA binding protein-like [Oryza sativa Japonica Group]
gi|38637631|dbj|BAD03911.1| DNA binding protein-like [Oryza sativa Japonica Group]
Length = 445
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 94/235 (40%), Gaps = 33/235 (14%)
Query: 234 IKARVTAK-GELRHYNNQRGDGKVFHFDL--LDSDGGEIRVTCFNAVADQFYHQVEAGKI 290
+ R+ A+ L + + G G +FH DL LD G I + D ++ K+
Sbjct: 14 LNTRILARVSRLWDFCDLNGSGNIFHTDLVLLDQMGNSIHAQIYPPAIDSLRPLLKEQKV 73
Query: 291 YLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMEN 350
Y + +++ A + + + N L I + + E A P F P +D+ + +
Sbjct: 74 YYIDSFTVRYANRTYRPVDNSLMIVFSKWTTFEEYIEPAADFPGITFSLTPFSDIPNLVD 133
Query: 351 NSV--VDLIGVVSYI-SPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLR 407
++ VD++GV++ + SPT + ++ KRT+ + D S +
Sbjct: 134 KTIFYVDVMGVITEVGSPTVVRPKSRNADSLKRTIQICDASAGQTQAQ------------ 181
Query: 408 LQHMCDSGVFPILAVKAGRVSDFNG---KVVGTISTTQLFIEPDFPEAHRLKEWF 459
++ V D+ G V G+ S + ++ D PE LKE F
Sbjct: 182 -----------VIVFVGTLVKDYTGLGLTVTGS-SPCKWYLNLDIPEVLELKESF 224
>gi|149676198|dbj|BAF64710.1| putative transposase [Ipomoea tricolor]
Length = 517
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 143/319 (44%), Gaps = 32/319 (10%)
Query: 329 DASIPRQQFHFRPINDVE---GMENNSVVDLIGVVSYI-SPTASLMRKNGTETQKRTLHL 384
D P F +P++ ++ + ++DLIG+V I +P ++ G T+ L
Sbjct: 112 DIVFPSHMFRLQPLSQLKQKIDINEKELIDLIGMVVEINTPQDKVI--AGKATRLIDFLL 169
Query: 385 RDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNG--KVVGTISTTQ 442
D G ++ T+W + + Q V +L +V G KV + TQ
Sbjct: 170 EDTEGTQIKCTVWDDHVSKLEPFYQSTKQDPVIILLQFCRVKVDLSTGDIKVCSSFDVTQ 229
Query: 443 LFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRA--DIRK------TVSQIKDEG 494
+++ DFPE ++ + E +S+ +S ++S G A D T+S+I +
Sbjct: 230 IWVNSDFPEFQEFRDRLKGEQTPMRSI-VSMSNMSYGSAFEDFSSGQMNVFTISEIYQK- 287
Query: 495 LGTKEKPDWITVSATIVYIKCD-NFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSV 553
KE D+ V+A IV I+ ++ Y +C CNKK + + + CD+C ++
Sbjct: 288 ---KEYGDF-WVAAKIVGIESSWDWFYVSC----KSHGCNKK-LTLRNTLYDCDKCKRTW 338
Query: 554 VECDYRYILQFQIQDHTG-LTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRN 612
E RY ++ + D G ++ +EC E ++G+SA DL + + + + + +
Sbjct: 339 QEGILRYRVKVRAVDLDGNAPFILWDKECTE-LLGISATDLR--QKILEGPLRIPREIES 395
Query: 613 ATFTKYLFKLKVKEETFSD 631
LF++ V++E F +
Sbjct: 396 LVGLAMLFRIAVRKEQFDN 414
>gi|77555599|gb|ABA98395.1| hypothetical protein LOC_Os12g27380 [Oryza sativa Japonica Group]
Length = 609
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 83/199 (41%), Gaps = 24/199 (12%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSD---------------- 265
I+ L P I ARV+ L H+ + D + H DL+ D
Sbjct: 206 ISQLYPGDSDKKILARVS---RLWHFRDLNDDTNILHTDLVLLDEVNTKRITKIVYHIQN 262
Query: 266 --GGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQ 323
G V + + + G +Y + ++K A + + + ND I + ++
Sbjct: 263 LKGNSTHVQMYRGAIEVLKPLIHEGNVYYIESFTVKDANRTYRPVSNDFMILFSKWTTLE 322
Query: 324 LCYEDDASIPRQQFHFRPINDVEGMENNSV--VDLIGVVSYISPTASLM-RKNGTETQKR 380
C + A P F P ++ + + ++ VD++GV++ IS T+++ R ++ KR
Sbjct: 323 ECIDIPADFPAITFSLTPFQEIPSLVDKNIFYVDIMGVITEISSTSTVRPRSRDADSLKR 382
Query: 381 TLHLRDMSGRSVELTLWGN 399
TL + D S LT+ G+
Sbjct: 383 TLQICDASSLYTGLTITGS 401
>gi|242081655|ref|XP_002445596.1| hypothetical protein SORBIDRAFT_07g022365 [Sorghum bicolor]
gi|241941946|gb|EES15091.1| hypothetical protein SORBIDRAFT_07g022365 [Sorghum bicolor]
Length = 273
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 58/94 (61%), Gaps = 6/94 (6%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PV+QV+D+ L+ S+ ++ R+ +VLSD +Q LA N LV + L++ GS++
Sbjct: 58 PVMQVVDVSLLRSELKKFG-----RYHLVLSDTVYTQDATLAPGLNHLVENILIK-GSII 111
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKP 95
RL +F C+ ++ ++IV+ L+V+ C+ IG P
Sbjct: 112 RLLEFICDTTKSPSMIIVIQLEVLQTVCELIGSP 145
>gi|290990877|ref|XP_002678062.1| single stranded DNA binding, replication factor-a protein
[Naegleria gruberi]
gi|284091673|gb|EFC45318.1| single stranded DNA binding, replication factor-a protein
[Naegleria gruberi]
Length = 1043
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 11/97 (11%)
Query: 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGE---------IR 270
IP + L+P + W IK +V K + + N+RG G+V + D G+ ++
Sbjct: 541 IPFSQLDPVLDDWCIKVKVIKKHNEKSWANERGSGRVAAITIADELSGDMSLSSKQNKVK 600
Query: 271 VTCFNAVADQFYHQVEAGKIYLVSRGSL--KPAQKNF 305
+ FN ++FY Q+E G+ Y V++G L KP + F
Sbjct: 601 LIMFNDCINEFYDQMEEGESYYVNKGHLIKKPHEDFF 637
>gi|125547080|gb|EAY92902.1| hypothetical protein OsI_14707 [Oryza sativa Indica Group]
Length = 455
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 116/274 (42%), Gaps = 18/274 (6%)
Query: 247 YNNQRGDGKVFHFDLL--DSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKN 304
Y D H DL+ D G + AD+F ++ K+Y S+ + P++
Sbjct: 4 YTGTANDVPPMHVDLVLVDEKGNAMYAEIPGVEADKFRPLLQESKVYTFSKFLVLPSKPA 63
Query: 305 FNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVE---GMENNSVVDLIGVVS 361
+ N I L + V+ E A P F+ +D+ GM+ D+IG++
Sbjct: 64 YKPFPNKYMIKLTPWTNVEQVNEVPADFPSHVFNLVQFSDLSLRVGMQE-YFTDVIGMII 122
Query: 362 YISPTASL-MRKNGTETQKRTLHLRDMSGRSVELTLWGNFCND-DGLRLQHMCDSGVFPI 419
+S A + M ++T KR + LRD++ V+L LWG D D + + V +
Sbjct: 123 GVSKLAYVRMASKTSDTPKRVIALRDLANCEVKLVLWGEHALDFDADAVHSVGQDNV--V 180
Query: 420 LAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVS-ISRDSLSV 478
+ + G + K + S + ++ D PE + ++F+ G + + IS S
Sbjct: 181 VGIFVGTLMKAYNKTLSGGSACKWYLNEDIPE---INQFFDSLGDSAPKIQWISAGEKSF 237
Query: 479 GRADIRKTVSQIKDEGLGTKEKPD-WITVSATIV 511
G + + +Q++ + + +K D W V T V
Sbjct: 238 GSS---QRPAQLEHKSVADLKKIDPWEAVKFTFV 268
>gi|89257630|gb|ABD65118.1| hypothetical protein 31.t00031 [Brassica oleracea]
Length = 467
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 131/313 (41%), Gaps = 35/313 (11%)
Query: 355 DLIG-VVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCD 413
D+IG +V Y ++ NG +T+K T+ LR+ + + + LWG F + +Q D
Sbjct: 84 DVIGQIVEY--SHVEIVSVNGKDTEKITVELRNENDVRLTIVLWGKFAMNVSDAIQLRAD 141
Query: 414 SGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEG---KNTQSVS 470
V +L +V + V + + + I P E K+G ++ +
Sbjct: 142 HAVVCVLRFGKIKVWKEDRSVSNAYNVSDIAINPSMNEVQAFLALLPKDGLPLAIVEAKA 201
Query: 471 ISRDSLSVGRADI-----RKTVSQIKDEGLGTKEKPDWITVSATIVYIKCD-NFCYTACP 524
+ S+ + D RKT+S++ L +++ I V TI I+ D + Y +C
Sbjct: 202 LPMVSMISEKEDFFIHTPRKTISEV----LESRQTERCI-VMCTIAAIESDMGWFYLSCK 256
Query: 525 IMIGDRPCNKKVM----NNGDG--RWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAF 578
+ C+KKV +N DG ++ C +C + RY L + D+T T F
Sbjct: 257 V------CSKKVQTVPNDNDDGGFKYFCTKCKVYTPKMLPRYKLHLVVLDNTSNTKFLLF 310
Query: 579 QECAEEIMGMSAKDLYSLKYVD--QNDEKFGEVVRNATFTKYLFKLKVKEETF---SDEQ 633
+++ +L K D QN + + N YLFK+ +++E + D
Sbjct: 311 DNLGLQLLNQPCIELTG-KVTDEVQNPDALPIALTNLVGKTYLFKIVIEKENYLYXHDTY 369
Query: 634 RVKSTVVKAERYN 646
+V + A+ N
Sbjct: 370 KVLKIITNADMIN 382
>gi|297736414|emb|CBI25137.3| unnamed protein product [Vitis vinifera]
Length = 115
Score = 58.5 bits (140), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 59/105 (56%)
Query: 559 RYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKY 618
+YI+ ++ D +G + F E AE I G SA +L LK + + +F + ++ A + +
Sbjct: 9 QYIMVVKVSDDSGEACLALFNEQAERIFGCSADELDKLKSQEGEENRFQQKLKEAIWVPH 68
Query: 619 LFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKS 663
LF++ V + + +E+R T ++++E+R +L+ + K+K+
Sbjct: 69 LFRISVAQHEYMNEKRQWITARAVVAVDFAAESRLLLEEISKMKT 113
>gi|413937763|gb|AFW72314.1| hypothetical protein ZEAMMB73_397324 [Zea mays]
Length = 564
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/351 (20%), Positives = 140/351 (39%), Gaps = 28/351 (7%)
Query: 254 GKVFHFDLLDSD--GGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHND 311
G + H D++ SD G I +A++ +E +IY +SR + A+ + + D
Sbjct: 35 GPLQHIDMVLSDCKGNSIYAEIPANLAEEKGALIETNQIYDISRFRVTAAKTAYKPIDGD 94
Query: 312 LEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEG--MENNSVVDLIGVVSYISPTASL 369
I ++++ + P + P +++E +D++G ++ I+ +
Sbjct: 95 KMIQFTTYTIIKPASNPPPTFPLYIYQLTPFDEIESQIQHKTKFLDVLGTITEIT-ALKI 153
Query: 370 MRKNG--TETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDS-GVFPILAVKAGR 426
+ G + T R + + D+S +++++TLW +Q + D PILA+ G
Sbjct: 154 VHIEGQLSPTIIRDVMIEDLSRKTLKITLWAK--RATSFTIQDVYDPVSKKPILALFVGC 211
Query: 427 VSDF-NGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRK 485
+ F G + + + P PEA + + G T + + +
Sbjct: 212 LPKFYKGVYLSGGAACHWYFNPTIPEAEAYQ---NRRGGETIQLHLPTQPKHALQTFQPP 268
Query: 486 TVSQIKDEGLGTKEKPDW----ITVSATIVYIKCDN-FCYTACPIMIGDRPCNKKVMNNG 540
T+ E L T D+ + TI I N + Y +C C +K +
Sbjct: 269 TIEHKTLEQLLTMNPYDYPDTGYECTVTITEIDTSNTWWYPSC------TKCGRKTTPHN 322
Query: 541 DGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAK 591
++CD C + ++Y L+F+ D T + + F A I+G S +
Sbjct: 323 TA-YYCDWCKWDGYK--FKYKLKFRASDATAMAQMFCFDNIARYIVGKSCE 370
>gi|242047974|ref|XP_002461733.1| hypothetical protein SORBIDRAFT_02g007190 [Sorghum bicolor]
gi|241925110|gb|EER98254.1| hypothetical protein SORBIDRAFT_02g007190 [Sorghum bicolor]
Length = 735
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/389 (21%), Positives = 156/389 (40%), Gaps = 53/389 (13%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDL--LDSDGGEIRVTCFNAVA 278
P++ L P + I RV+ E Y + + HFD+ +D G + V
Sbjct: 240 PLSELRPMNTMYNIHVRVSRTWE---YRGKSEKNPLIHFDMVVIDQKGYAMYCEVSPEVL 296
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
+E GK+ + + ++ A+ + + + L M + + +D S P+ +H
Sbjct: 297 PHMKQYLEEGKVLYIWKACVERAKPGYRVVDAPYMLKLIMRTEIFEGNSNDTSFPK--YH 354
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
D++ N VD+IG ++ IS A +G +R + L+D G +++L+L
Sbjct: 355 -----DLQSFLN---VDVIGKITAISNAAVARNTSGDLMMRRLITLQDHKGNTIDLSL-- 404
Query: 399 NFCNDDGLRLQHMCDSGVFPI------LAVKAG---RVSDFNGKVVGTISTTQLFI-EPD 448
G R VF I +A+ G ++ + K + S + +I E D
Sbjct: 405 -----SGQRALEFDAEAVFDIGQNHHVIAIFVGTLMKIYREDYKFLSGTSACRWYINEND 459
Query: 449 FPEAHRLKEWFEKEGKNTQSVSI-SRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVS 507
P + + Q + + S D + G ++++ L + D +T
Sbjct: 460 IPAMRTFQRGLPYQVTPIQKLQLQSEDYMEQG----------VEEKTLFDLKHIDPLTDK 509
Query: 508 ATIVYIKC---DNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQF 564
T+ I + +CY AC + CN ++ DG + C + S + D++Y + F
Sbjct: 510 CTVTLISLAEKEQWCYRACKV------CNSTLILGNDG-YDCTKDGCSCKQYDWKYKVCF 562
Query: 565 QIQDHTGLTWVTAFQECAEEIMGMSAKDL 593
D T F++ E++G SA+ L
Sbjct: 563 IAADDTYSLQFMFFEKKGVELIGKSAETL 591
>gi|302776414|ref|XP_002971372.1| hypothetical protein SELMODRAFT_412040 [Selaginella moellendorffii]
gi|300161354|gb|EFJ27970.1| hypothetical protein SELMODRAFT_412040 [Selaginella moellendorffii]
Length = 132
Score = 57.8 bits (138), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Query: 485 KTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRW 544
KTVS++ L E V + + +F Y AC ++ R C KKV + W
Sbjct: 26 KTVSEMLSINLKVSEFSAIFRVIVLVKEFQTGDFYYPACMKVVNGRQCAKKVTQVSESMW 85
Query: 545 HCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSA 590
C+ CD + +Y L I D TG W AF + A EI+ M A
Sbjct: 86 QCNSCDTDSGDIHLKYALHLCILDSTGHIWAVAFDD-ANEIVEMPA 130
>gi|357517787|ref|XP_003629182.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
gi|355523204|gb|AET03658.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
Length = 604
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 93/420 (22%), Positives = 164/420 (39%), Gaps = 32/420 (7%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I P++A+ ++ RV + +N + D + H LLD G+I++T +
Sbjct: 5 ITPVSAIVAGRINIRLRVRVVHVWTIPEFNRPQEDSAM-HLLLLDEKFGKIQLTVKKHLI 63
Query: 279 DQFYHQVEAGKIY-----LVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIP 333
VE G Y LV+R P NH + LD + + +IP
Sbjct: 64 PMIKSVVEEGAAYMLDNVLVTRND--PKYGTTNH-----KWRLDFLHKTKFNKIEALNIP 116
Query: 334 RQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRK--NGTETQKRTLHLRDMSGRS 391
+ F F ++ E ++++ +I V+ ++ + K NG ++ L L+D R
Sbjct: 117 QNHFDF--VSFAEILDSDREERIIDVIGHVVERDVMKDKEVNGRTSKLLDLTLQDSESRR 174
Query: 392 VELTLWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFP 450
+ +LW + H +S V I+ + V +L ++ D
Sbjct: 175 IHCSLWATYAERMTSFFATHEANSPVIVIMQQCKLKSYCSTMGVSNAFYGIKLIVDGDIA 234
Query: 451 EAHRLKEWFE-KEGKNTQSVSISRDSLSVGRAD-IRKTVSQIKDEGLGTKEKPDWITVSA 508
E K +E + TQ +S S S V D + ++ ++ L EK + I ++
Sbjct: 235 EVSEYKSKINGEEVQVTQGISQSSASSIVPLVDDMLQSHRMTIEDLLDASEKCNGIVLAT 294
Query: 509 TIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCD--QSVVECDYRYILQFQI 566
K N+ Y AC C +V GR C +C+ ++ V R+ + Q+
Sbjct: 295 VCDIEKEFNWYYQACT------KCAGRVKTIA-GRLFCPKCNTGRNAVP---RFKVHLQV 344
Query: 567 QDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKE 626
D+TG T F +G S +DL + +N + F + LFK++V E
Sbjct: 345 MDNTGSTSFILFDRNVSNYVGKSVQDLIQQQAQQKNADDFPAEFDTFYGKQMLFKVEVAE 404
>gi|323455451|gb|EGB11319.1| hypothetical protein AURANDRAFT_61710 [Aureococcus anophagefferens]
Length = 622
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
PVLQ +D++ ++ R+R+++SD + M + N LVT G L G +V
Sbjct: 24 PVLQALDVR------NSAKEGTADRYRVLVSDTVHFLRCMAVAKLNALVTDGHLVKGCLV 77
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKP 95
RL + IQNR ++I++DL+V+ + +G P
Sbjct: 78 RLLDYRVTWIQNRAVIILLDLEVLSGAMERVGSP 111
>gi|297596244|ref|NP_001042233.2| Os01g0184300 [Oryza sativa Japonica Group]
gi|255672951|dbj|BAF04147.2| Os01g0184300 [Oryza sativa Japonica Group]
Length = 168
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 8/154 (5%)
Query: 234 IKARVTAKGELRHYNNQRGDGKVFHFDL--LDSDGGEIRVTCFNAVADQFYHQVEAGKIY 291
IKARV+ + N+ R K+ H DL LD G I + V ++ GK+Y
Sbjct: 18 IKARVSRLWDFHDLNDDR---KIVHTDLVLLDETGNSIHAQMYQHVIVNLKPLLQEGKVY 74
Query: 292 LVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENN 351
+ +++ A + + + + L I + ++ C + A P F P DV + +
Sbjct: 75 YIDSFTVRYANRTYRPVAHSLMILFTKWTTLEECVDVPADFPAITFSLTPFGDVPSLVDK 134
Query: 352 SV--VDLIGVVSYISPTASLM-RKNGTETQKRTL 382
++ VD++GV++ I T+++ + T++ KRTL
Sbjct: 135 NIFYVDIMGVIAEIGTTSTVRPQSRNTDSLKRTL 168
>gi|413933977|gb|AFW68528.1| hypothetical protein ZEAMMB73_247337 [Zea mays]
Length = 507
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 74/379 (19%), Positives = 152/379 (40%), Gaps = 29/379 (7%)
Query: 225 LNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSD--GGEIRVTCFNAVADQFY 282
L Y I+ V+ K ++ +G + H D++ SD G I +A++
Sbjct: 15 LTAYKKHAIIQVHVSRKWS---FHGATENGPLQHIDMVLSDCKGNSIYAEIPANLAEEKG 71
Query: 283 HQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPI 342
+E +IY +SR + A+ + + D I ++++ + P + P
Sbjct: 72 VLIETNQIYDISRFRVTAAKTAYKPIDGDKMIQFTTYTIIKPASNPPPTFPLYIYRLTPF 131
Query: 343 NDVEGM--ENNSVVDLIGVVSYISPTASL-MRKNGTETQKRTLHLRDMSGRSVELTLWGN 399
+++E +D++G ++ ++ ++ ++ + T R + + D+S +++++TLW
Sbjct: 132 DEIESQIQHKTKFLDVLGTITEVTALKTVHIQGQLSPTIIRDVMIEDLSRKTLKITLWAK 191
Query: 400 FCNDDGLRLQHMCDS-GVFPILAVKAGRVSDF-NGKVVGTISTTQLFIEPDFPEAHRLKE 457
+Q + D PILA+ G + F G + + + P PEA +
Sbjct: 192 --RATSFTIQDVYDPVSKKPILALFVGCLPKFYKGVYLSGGAACHWYFNPTIPEAEAYQN 249
Query: 458 WFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDW----ITVSATIVYI 513
+ G T + + + T+ E L T D+ + TI I
Sbjct: 250 ---RRGGETIQLHLPTQPKHALQTFQPPTIEHKTLEQLLTMNPYDYPDTGYECTVTITKI 306
Query: 514 KCDN-FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
N + Y +C C +K + + ++CD C + ++Y L+F+ D T +
Sbjct: 307 DTSNTWWYPSC------TKCGRKTTPH-NTTYYCDWCKWDGYK--FKYKLKFRASDATAM 357
Query: 573 TWVTAFQECAEEIMGMSAK 591
+ F A I+G S +
Sbjct: 358 AQMFCFDNIARYIVGKSCE 376
>gi|390604500|gb|EIN13891.1| hypothetical protein PUNSTDRAFT_140327 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 1276
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 2/111 (1%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
+P +QV+ ++ V ++ +R+R+ +SDG+ +LA + N LVTS +Q +V
Sbjct: 918 IPKVQVLTVRKVTPTVSYAKE--TERYRLTVSDGAHFIPALLAPESNHLVTSNAVQKNTV 975
Query: 61 VRLTKFTCNVIQNRMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVT 111
+ L F NV+ ++ + + + V+ + IG P+ P + P SVT
Sbjct: 976 ITLDNFATNVVNGKIALEIFAMTVVAQPNEKIGSPMICLPPQAVASPESVT 1026
>gi|4895168|gb|AAD32756.1| putative replication protein A1 [Arabidopsis thaliana]
Length = 458
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/363 (22%), Positives = 141/363 (38%), Gaps = 47/363 (12%)
Query: 254 GKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLE 313
G+ F L D G +I + ++F + G+ + L A F + +
Sbjct: 4 GETFDMVLSDVRGKKIHASVKREHLNRFERLIVPGEWRAIENFGLTYATGQFKATDHRYK 63
Query: 314 I-FLDMTSMVQLCYEDDASIPRQQFHFRPINDVE--GMENNSVVDLIGVVSYISPTASLM 370
+ F+ T +V++ D+ NDV G+ N ++D++G + + ++
Sbjct: 64 MGFMAQTRVVRIDPLSDSYF----LSLTAFNDVLNGGLNQNYLIDVVGQIVNVGEMETID 119
Query: 371 RKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDS--GVFPILAVKAGRVS 428
N T+K LRD + TLWG+F ++ C++ G I V+ ++
Sbjct: 120 VHNQP-TKKIDFELRDQKDERLPCTLWGSFAE----QVFTACEAANGEMIICLVRFAKLK 174
Query: 429 DFNG--KVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDS----------- 475
+ + +T+Q+ I PD PE K+ K+ + S
Sbjct: 175 TYKDVRSISNAFNTSQILINPDLPEILEFKDALPKDCLALTLIESKPKSKIDEFPTGDFY 234
Query: 476 LSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCD-NFCYTACPIMIGDRPCNK 534
L + I K VS++ D G + V TI I D ++ Y C + CNK
Sbjct: 235 LQFAKKTI-KEVSEMFDVGR--------VKVLCTIYDIDRDWSWYYIVC------KKCNK 279
Query: 535 K----VMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSA 590
K VM + + C+ C + RY L ++ D +G + F + EI+G A
Sbjct: 280 KVTKVVMTSLKAQLWCETCRAPITNVLARYKLHVKVMDSSGEMKLMLFDAMSSEIVGCPA 339
Query: 591 KDL 593
+L
Sbjct: 340 NNL 342
>gi|281208685|gb|EFA82861.1| hypothetical protein PPL_04556 [Polysphondylium pallidum PN500]
Length = 615
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 721 GQYGNQYSGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGA 780
G GNQ G GT R +C C GH S +CP S +GG N SSG
Sbjct: 18 GPRGNQKGG------GTGHDR-ACFKCNQTGHISRDCPEASSSSSSRAGG---NDRSSGG 67
Query: 781 GIATSSECYKCHKTGHWARDCP 802
G C+KC++TGH +RDCP
Sbjct: 68 GAGNDRACFKCNQTGHISRDCP 89
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Query: 736 GTSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTG 795
G++ ++C C GH S +CP S S SS AG CYKC++TG
Sbjct: 117 GSTGHDRACFKCNQTGHISRDCPEASS------------SISSRAG-GNDRSCYKCNQTG 163
Query: 796 HWARDCP 802
H +RDCP
Sbjct: 164 HISRDCP 170
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 729 GSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFS------SGAGI 782
G+ + G + ++C C GH S +CP SG +++ G
Sbjct: 60 GNDRSSGGGAGNDRACFKCNQTGHISRDCPEASSGGYKNNNNNNNQYNGGNRGNQKGGST 119
Query: 783 ATSSECYKCHKTGHWARDCPSLNAA 807
C+KC++TGH +RDCP +++
Sbjct: 120 GHDRACFKCNQTGHISRDCPEASSS 144
>gi|242048790|ref|XP_002462141.1| hypothetical protein SORBIDRAFT_02g020420 [Sorghum bicolor]
gi|241925518|gb|EER98662.1| hypothetical protein SORBIDRAFT_02g020420 [Sorghum bicolor]
Length = 770
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 83/188 (44%), Gaps = 12/188 (6%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQF 281
++ ++P WTIK RV +L +G L+D G I + +F
Sbjct: 236 LSKIDPTRHNWTIKVRVARMWKLSSTPKWKG-VTAMELVLVDEQGMGITACVGHKDLTKF 294
Query: 282 YHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEI-FLDMTSMVQLCYEDDASIPRQQFHFR 340
+ G+ Y++ + + + +N + N I F T++ ++ + +PR F+F
Sbjct: 295 ADALVEGRSYVIKKFQVSRHPRKYNPVPNPQTIYFTPWTAIEEIPTKLSTQLPRNVFNFV 354
Query: 341 PINDV-------EGMENNSVVDLI-GVVSYISPTASLMRKNGTE--TQKRTLHLRDMSGR 390
++ G+ + V L+ V+ ++ L+R NG T +R L LRD+S R
Sbjct: 355 DFEELGQRRRNEHGLVGDVVFGLLPDVIGQLTVIHLLLRSNGLNGVTVRRVLELRDLSDR 414
Query: 391 SVELTLWG 398
+ +TLWG
Sbjct: 415 LLHITLWG 422
>gi|358345149|ref|XP_003636645.1| hypothetical protein MTR_050s0040 [Medicago truncatula]
gi|355502580|gb|AES83783.1| hypothetical protein MTR_050s0040 [Medicago truncatula]
Length = 472
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 71/341 (20%), Positives = 145/341 (42%), Gaps = 49/341 (14%)
Query: 266 GGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLC 325
G +I + + F ++ GK+Y +S S+ P+ ++ + +I MT+ VQ+
Sbjct: 22 GSKIHTSVRKQLLYVFQSRLSEGKVYNLSCFSVAPSAGSYRTTQHPYKIIFQMTTKVQV- 80
Query: 326 YEDDASIPRQQFHFRPINDV--EGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLH 383
+ +IP+ + DV + + +VD++G+++ IS +R +G T+
Sbjct: 81 -SESFTIPKYGVSLTKLVDVCAHTYDYDYLVDVVGLMTGISNEREYIR-DGKVTKMVVFQ 138
Query: 384 LRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQL 443
L D SG S E L+G + + ++ D P++ V+ +V F G +++ +Q+
Sbjct: 139 LTDDSG-SCECALFGKYVDALNKLMRKAVDG--MPVVLVQFAKVKIFKGI---SLTISQI 192
Query: 444 FIEPDFPEAHRLKEWFEKEGKNTQSV---------SISRDSLSVGRADIRKTVSQIKDEG 494
+ G N SV S+ D L + +KT++Q+ D
Sbjct: 193 SV--------------SSVGINISSVPKLGPCVRASVQEDFLHMHP---KKTLAQLHD-- 233
Query: 495 LGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVV 554
T E ++ + ++ ++ Y AC C++ V + + ++C C ++V
Sbjct: 234 --TPEDGTFVVYATFNGFVDGEDCWYPAC-------KCHRSVAPDSEA-YYCKGCVKNVF 283
Query: 555 ECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYS 595
+ RY ++ + D T + F + I+ +S L S
Sbjct: 284 QMVPRYRVKINVSDATSVAVFVMFAGDVQNILNLSCSSLVS 324
>gi|414888072|tpg|DAA64086.1| TPA: hypothetical protein ZEAMMB73_996720 [Zea mays]
Length = 238
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 87/182 (47%), Gaps = 7/182 (3%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSD--GGEIRVTCFNAVA 278
P++AL ++ +V K E R +G + H D++ +D G I + +A
Sbjct: 5 PLSALTLQDRNAEVQIQVHRKWEFR---GAVDNGPILHIDMILTDCTGNAIHCQIPSFLA 61
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
+ + GKIY ++R S+ A+ + + DL +++ + ++LC+ + P +H
Sbjct: 62 ATRGDEFQVGKIYKMTRFSVARAKSTYKPVDGDLMLYVKPYTTLELCHTSPSGFPLYVYH 121
Query: 339 FRPIN--DVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTL 396
+ D +G + D++G+++ IS + + + R + ++++S +++TL
Sbjct: 122 LTSYDKIDPDGSNARNFHDVLGIITEISAIKPVGNAHIPSSYNRHVLIKNLSDDILKITL 181
Query: 397 WG 398
WG
Sbjct: 182 WG 183
>gi|38346586|emb|CAE04650.2| OSJNBa0061G20.6 [Oryza sativa Japonica Group]
Length = 1410
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 83/183 (45%), Gaps = 8/183 (4%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFH--FDLLDSDGGEIRVTCFNAVAD 279
I+ L P +G I R++ + ++N+ + D + H L+D G I F
Sbjct: 636 ISKLEPGLGNPRIYVRLS---RMWNFNDPKDDISLLHVALVLVDETEGSIAAQIFPPDGK 692
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
F + GKIY ++ ++ +++ + N L I ++V+ S P +
Sbjct: 693 LFKPLLSEGKIYYLTHYIVRNCSRSYKPVSNSLAIAFTGWTIVEEYVNAPTSFPFYTYSL 752
Query: 340 RPINDVEGMENN--SVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTL 396
+ N + + +N S D IGV++ +S S+ R ++ KR + + D + ++ ++L
Sbjct: 753 KSFNQLTALLDNKDSFTDTIGVITEVSSITSVRSRTRDGDSLKRNVFISDANNATIRVSL 812
Query: 397 WGN 399
WG+
Sbjct: 813 WGD 815
>gi|108862225|gb|ABA96519.2| hypothetical protein LOC_Os12g06230 [Oryza sativa Japonica Group]
Length = 2279
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 133/331 (40%), Gaps = 43/331 (12%)
Query: 285 VEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPIND 344
+ GK+Y ++ ++P +N+ ++N + I + ++ + A P + P N+
Sbjct: 1501 ITEGKVYRLTFYRVRPCSRNYRPVNNRMSINFTKWTTLEEHLDVPADFPCYAYSPTPYNE 1560
Query: 345 VEGM--ENNSVVDLIGVVSYISPTASL-MRKNGTETQKRTLHLRDMSGRSVELTLWGNFC 401
+ +S D+IGV++ +S ++ R ++ KR++ +R+ + + LWG
Sbjct: 1561 LRSHVDRKDSFTDVIGVITEVSSVTTIQTRIKDGDSLKRSVCIRNADNVIINIALWGE-- 1618
Query: 402 NDDGLRLQHMCDSGVFPILAV-----KAGRVSDFNGKVV---------GTISTT-----Q 442
+ FP A+ K +V+ F G +V G +S + +
Sbjct: 1619 -----------RATSFPEDAIISAGEKEPQVAIFVGTLVRGYVRNASLGNVSLSGNSACK 1667
Query: 443 LFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPD 502
+I D PE + K+ + + Q + I ++ VG +KTV+Q+K+ +K +
Sbjct: 1668 WYINIDTPEVNSFKDSIKGNYEPIQFIDIPVPNVIVGAE--QKTVAQLKELHPFKFKKHE 1725
Query: 503 WITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYIL 562
+ + ++ YTAC I C K G D +V R+ L
Sbjct: 1726 FQVTVVIKKFCMQASWWYTACDI------CKKTAKPYGRAYRCGDPTCPPIVSASPRFKL 1779
Query: 563 QFQIQDHTGLTWVTAFQECAEEIMGMSAKDL 593
D T T F A+ ++G S L
Sbjct: 1780 NIIAGDETAETTFILFGRLAQRLIGRSVDTL 1810
>gi|218198314|gb|EEC80741.1| hypothetical protein OsI_23219 [Oryza sativa Indica Group]
Length = 667
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 111/249 (44%), Gaps = 32/249 (12%)
Query: 354 VDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGR-----SVELTLWGNFCNDDGLRL 408
+D+IG++S + P M T +++R ++R++ V++TLWG+ L
Sbjct: 54 LDVIGLLSGMKPIEQRMLGKNT-SRERVCNMREIELLLLEGEKVKITLWGDI-------L 105
Query: 409 QHMCDSGVF--PILAVKAGRVSDFNGKVV--GTISTTQLFIEPDFPEAHRLKEWFEKEGK 464
+M D + + + G + K++ G S+T++F++ + P + + +
Sbjct: 106 ANMVDDDLLGKQTVFIATGLLVKEYEKLLSFGVTSSTEVFLDMEIPASMEI--LSRHNAE 163
Query: 465 NTQSVSISRDSLSVGRADI-----RKTVSQIKDEGLGTKEKPDWI-TVSATIVYIKCDNF 518
I D+ + G + RKT+ +I + ++ ++I TV A I IK N+
Sbjct: 164 KVLPTMIEVDASTQGTIEEQMFYNRKTLKEITELRYSNIQQKEFICTVKAKIEEIKSRNW 223
Query: 519 CYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAF 578
Y +C C + +N + C+ C + V RY++ +I DHT T T F
Sbjct: 224 WYMSCDKCF----CGTRKESNV---YICNSCGKEAVNPKPRYVINLEISDHTTRTTCTIF 276
Query: 579 QECAEEIMG 587
E AE I G
Sbjct: 277 NEEAERIFG 285
>gi|391348893|ref|XP_003748675.1| PREDICTED: uncharacterized protein LOC100908191 [Metaseiulus
occidentalis]
Length = 292
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 122/297 (41%), Gaps = 33/297 (11%)
Query: 191 RTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQ 250
R P+ P QS S + P II I ++ G+ ++ RV +K R +
Sbjct: 20 RAPEVPDDQSSS--------SQGRTPKNIIDIT-MDQVGGQ--VQGRVKSKTPARSWQRD 68
Query: 251 RGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHN 310
G++F F ++DS +I V + Y Q+ G+ Y +S KP + +
Sbjct: 69 GSRGEIFSFIVVDS-TAQINVIVAGEDCENVYKQINVGECYKLSAFRQKPCNPKYKVTDH 127
Query: 311 DLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLM 370
E+ L S ++ +D +PR+ I +++ V + +V +S +
Sbjct: 128 HFELQLSKISKIEEVPGND--LPRENVTSITIAEIKSSSLKENVSINFIVYEVSEPQTFS 185
Query: 371 RKNGTETQKRTLHLRDMSGRSVELTLWG-NFCNDDGLRLQHMCDSGVFPILAVKAGRVSD 429
++G QK+ L D + R + L LW N DG + + ++ V +
Sbjct: 186 CRDGETRQKQNDVLEDDTKRIITLNLWSENVGELDGQEGRA---------INIENVSVRE 236
Query: 430 FNGKVVGT-ISTTQLFIEPDFPEAHRLKE---WFEKEGKNTQSVSISRDSLSVGRAD 482
+ GK T S T + P+ RL E W+EK+G N + + ++V RAD
Sbjct: 237 YKGKKNLTPTSGTAYKSARECPDDDRLSELTVWWEKDGYNCEF-----EDVAVPRAD 288
>gi|357511469|ref|XP_003626023.1| Replication factor A protein [Medicago truncatula]
gi|355501038|gb|AES82241.1| Replication factor A protein [Medicago truncatula]
Length = 526
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 97/425 (22%), Positives = 167/425 (39%), Gaps = 42/425 (9%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQR-GDGKVFHFDLLDSDGGEIRVTCFNAV 277
I P++++ GK IK RV + R + H L+D G+I+ T +
Sbjct: 5 ITPVSSI--VAGKINIKLRVRVINLWTVPDFSRPTEDNFIHLLLMDEKLGKIQATAKKTL 62
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIF-------LDMTSMVQLCYEDDA 330
+ V+ G Y + +N HN++ L++ + D
Sbjct: 63 IPKIRSLVQDGAAYEI---------QNVLVAHNEIRYRCTGHRWKLNLIDQTKFTKIDCN 113
Query: 331 SIPRQQFHFRPINDV-EGMENNSVVDLIGVVSYISPTASLMRKN--GTETQKRTLHLRDM 387
+IP F F P ++ E + + VD+IG + SL K G ++ + L D
Sbjct: 114 TIPEYHFEFVPFKEILESTKEDRHVDVIG---RVVERDSLKEKEVLGKKSMVLDITLEDT 170
Query: 388 SGRSVELTLWGNFC-NDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIE 446
G + +LW + D H +S V ++ + + + T+L ++
Sbjct: 171 EGNRIHCSLWDTYAIRMDAYLTVHDPNSPVIVVIHLCKLKKYYATMGISNAFYGTKLILD 230
Query: 447 PDFPEAHRLKEWFEK----EGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPD 502
D P +KE+ K + + TQ VS SL V A+ + E L
Sbjct: 231 DDHP---VVKEFLSKIDGADVEVTQGVSQITGSLIVPLAEDMLQSRMMTIEDLIESSDQC 287
Query: 503 WITVSATIVYIKCD-NFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYI 561
+ V A+I+ I+ + ++ Y AC G K++ GR C RC+QS R+
Sbjct: 288 VVIVLASIIGIEAEYSWYYDACTKCAG----RIKIIA---GRMFCPRCNQSRNAVP-RFK 339
Query: 562 LQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFK 621
L Q+ D+TG T F +G S +DL + ND+ + + K LFK
Sbjct: 340 LHVQVMDNTGSTSFILFDRNVSNYVGKSVQDLIDSQGQGNNDKGYPSDLDVLVGKKMLFK 399
Query: 622 LKVKE 626
+++ +
Sbjct: 400 VEITD 404
>gi|224122538|ref|XP_002330506.1| predicted protein [Populus trichocarpa]
gi|222872440|gb|EEF09571.1| predicted protein [Populus trichocarpa]
Length = 86
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 8/73 (10%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P++QV+D+K Q Q+RFR+++SD +Q ML TQ N+ V +GL++ GSV+
Sbjct: 22 PLVQVLDIK--------QMGSAQERFRLLVSDSVLTQHAMLGTQLNDRVKTGLVKKGSVI 73
Query: 62 RLTKFTCNVIQNR 74
+L + C+ +Q R
Sbjct: 74 QLIDYICSQVQKR 86
>gi|448376675|ref|ZP_21559675.1| replication factor A [Halovivax asiaticus JCM 14624]
gi|445656411|gb|ELZ09245.1| replication factor A [Halovivax asiaticus JCM 14624]
Length = 476
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 18/171 (10%)
Query: 233 TIKARVTAKGELRHYNNQRGD-GKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIY 291
T+ V G +R ++ G GKV + L D G +RVT ++ AD +++ ++
Sbjct: 175 TLVGEVLETGSIRTFDRDDGSKGKVSNLTLGDE-TGRVRVTLWDEQAD-LATEIDDSEVV 232
Query: 292 LVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENN 351
V G +K N LE+ + V++ ED +P PI DVE +
Sbjct: 233 EVVDGYVKERDGN-------LELHVGNQGTVEVVDEDVQYVPDST----PIEDVE---ID 278
Query: 352 SVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCN 402
VDL GVV P + R +G+E Q R + ++D +G + + LWG +
Sbjct: 279 QTVDLKGVVRSADPVRTFDRDDGSEGQVRNIRVQDATG-DLRVALWGEKAD 328
Score = 40.0 bits (92), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 93/194 (47%), Gaps = 31/194 (15%)
Query: 210 VGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHY--NNQRGDGKVFHFDLLDSDGG 267
VG+SEV IA + P M + A+VT GE++ + + DG+V + D+ D G
Sbjct: 48 VGESEVGG----IADIEPGMEEVKFVAKVTNVGEVKTFEREGEDDDGRVVNVDVADETGA 103
Query: 268 EIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE 327
+R+T ++ A+ ++EAG++ + +G K ++ +E+ +D + +
Sbjct: 104 -VRITFWDERAEAAVEELEAGQVLRI-KGRPKDG-------YSGVEVNVD-----EAQPD 149
Query: 328 DDASIPRQQFHFRPINDVEGMENNSV----VDLIGVVSYISPTASLMRKNGTETQKRTLH 383
DD I ++D +EN ++ V L+G V + R +G++ + L
Sbjct: 150 DDTEIEVN------VSDTHTVENLTIGLSDVTLVGEVLETGSIRTFDRDDGSKGKVSNLT 203
Query: 384 LRDMSGRSVELTLW 397
L D +GR V +TLW
Sbjct: 204 LGDETGR-VRVTLW 216
>gi|413948878|gb|AFW81527.1| hypothetical protein ZEAMMB73_249157 [Zea mays]
Length = 575
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 74/384 (19%), Positives = 153/384 (39%), Gaps = 31/384 (8%)
Query: 225 LNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSD--GGEIRVTCFNAVADQFY 282
L Y I+ V+ K ++ +G + H D++ SD G + +A++
Sbjct: 15 LTTYKKHAIIQVHVSRKWS---FHGATENGPLQHIDMVLSDCKGNSMYAEIPANLAEEKG 71
Query: 283 HQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPI 342
+E +IY +SR + A+ + + D I + ++++ + + P
Sbjct: 72 ALIETNQIYDISRFRVTAAKTAYKPIDGDKMIQFTIYTIIKPASNPPPTFSLYIYQLTPF 131
Query: 343 NDVEGM--ENNSVVDLIGVVSYISPTASL-MRKNGTETQKRTLHLRDMSGRSVELTLWGN 399
+++E +D++G ++ ++ ++ + + T R + + D+S +++++TLW
Sbjct: 132 DEIESQIQHKTKFLDVLGTITEVTALKTVHIEGQLSPTIIRDIMIEDLSRKTLKITLWAK 191
Query: 400 FCNDDGLRLQHMCDS-GVFPILAVKAGRVSDF-NGKVVGTISTTQLFIEPDFPEAHRL-- 455
+Q++ D PILA+ G + F G + + + P PEA
Sbjct: 192 RAT--SFTIQNVYDPVSKKPILALFVGCLPKFYKGVYLSGGAACHWYFNPAIPEAEAYQN 249
Query: 456 ---KEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDW----ITVSA 508
K + K G T + + + T+ E L T D+ +
Sbjct: 250 SITKYYAYKHGGETIQLHLPTQPEHALQTFQPPTIEHKTLEQLLTMNPYDYPDTGYECTV 309
Query: 509 TIVYIKCDN-FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQ 567
T+ I N + Y +C C +K + + ++CD C + ++Y L+F+
Sbjct: 310 TVTEIDTSNTWWYPSC------TKCGRKTTPH-NTTYYCDLCKWDGYK--FKYKLKFRAS 360
Query: 568 DHTGLTWVTAFQECAEEIMGMSAK 591
D T + + F A I+G S K
Sbjct: 361 DATAIAQMFCFDNIARYIVGKSCK 384
>gi|302816859|ref|XP_002990107.1| hypothetical protein SELMODRAFT_428624 [Selaginella moellendorffii]
gi|300142120|gb|EFJ08824.1| hypothetical protein SELMODRAFT_428624 [Selaginella moellendorffii]
Length = 161
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 8/145 (5%)
Query: 394 LTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAH 453
+ LW + D+G ++ G PI+ VK+G +SD+NGK IS T +P+ +
Sbjct: 1 MCLWDSQAKDEGSEIKEKLGLGERPIVCVKSGHISDYNGK---YISVTGGSTDPELEDVS 57
Query: 454 RLKEWFEKEGKNTQSVSISRDSLSVGRADIR--KTVSQIKDEGLGTKEKPDWITVSATIV 511
RL EW T V ++ S +A I K VS++ L + V ++
Sbjct: 58 RLCEWMVACYDTTSFVHVTNSS---SKAVISGTKIVSEMLSINLKVSKFSAIFRVIVSVK 114
Query: 512 YIKCDNFCYTACPIMIGDRPCNKKV 536
I+ +F Y AC ++ R C KKV
Sbjct: 115 EIQTGDFYYPACVKVVNGRQCGKKV 139
>gi|297719755|ref|NP_001172239.1| Os01g0223400 [Oryza sativa Japonica Group]
gi|56783998|dbj|BAD81453.1| unknown protein [Oryza sativa Japonica Group]
gi|56784071|dbj|BAD81308.1| unknown protein [Oryza sativa Japonica Group]
gi|255673012|dbj|BAH90969.1| Os01g0223400 [Oryza sativa Japonica Group]
Length = 249
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 69/156 (44%), Gaps = 9/156 (5%)
Query: 247 YNNQRGDGKVFHFDL--LDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKN 304
+ +Q+ D K+ HF L +D G I + + F + GK+Y + ++ +
Sbjct: 38 FCDQKDDDKILHFGLVLIDEKGTSIAAQIYPPCDEIFRPIITEGKVYYIKYFRVRKCNRQ 97
Query: 305 FNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGM--ENNSVVDLIGVVSY 362
+ + N + I+ + ++ + A IP + P + + +S D+IG+++
Sbjct: 98 YKPVDNCMSIYFTRWTKLEERVDPPAEIPLYTYSLSPFGGLRSRVGKKDSFTDIIGIITQ 157
Query: 363 ISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
+SP L T KR++ +R+ + + LWG
Sbjct: 158 LSPVTPLQ-----GTVKRSVFIRNTDNAILNVALWG 188
>gi|218189336|gb|EEC71763.1| hypothetical protein OsI_04360 [Oryza sativa Indica Group]
Length = 397
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 99/242 (40%), Gaps = 10/242 (4%)
Query: 247 YNNQRGDGKVFHFDL--LDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKN 304
Y D H DL +D G + AD+F ++ K+Y S+ + P++
Sbjct: 4 YTGTADDLPPIHVDLVLIDEKGNAMYAEIPGVEADKFRPLLQESKVYTFSKFLVLPSKPA 63
Query: 305 FNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVE---GMENNSVVDLIGVVS 361
+ N I L + V+ E A P F+ +D+ GM+ D+IG++
Sbjct: 64 YKPFPNKYMIKLTPWTNVEQVNEVPADFPSHVFNLVQFSDLSLRVGMQE-YFTDVIGMII 122
Query: 362 YISPTASL-MRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMC--DSGVFP 418
+S A + M ++T KR + LRD++ V+L LWG D + H D+ V
Sbjct: 123 GVSKLAYVRMASKTSDTPKRVIALRDLANCEVKLVLWGEHALDFDVDAVHNVGQDNAVVG 182
Query: 419 ILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSV 478
I + + N + + S + ++ D PE ++ + Q +S +S +
Sbjct: 183 IFVGTLMKAYN-NEETLSGGSACKWYLNEDIPEINQFFDSLGDSAPKIQWISAGAESFGL 241
Query: 479 GR 480
+
Sbjct: 242 SQ 243
>gi|391344163|ref|XP_003746372.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Metaseiulus occidentalis]
Length = 198
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 82/189 (43%), Gaps = 3/189 (1%)
Query: 240 AKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLK 299
K +++ + DG +F F L D + +I V + + + +++ G Y + +
Sbjct: 2 TKSDMKTFKKDNTDGNLFSFTLAD-NTADINVLVTGELGHEMFEKIQTGHCYQICDFKQR 60
Query: 300 PAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGV 359
P+ + ++ E+ L S V+ D +P++ + IN + E ++DL +
Sbjct: 61 PSHPLYKVTNHTCELLLGKISEVRQI--DGDHLPKKVEKYFTINQIRDTEVGKMIDLQAI 118
Query: 360 VSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPI 419
+ + S K G ++ + L D S + V LTLWG+ + R + D +
Sbjct: 119 IYDVGEIHSYSGKAGDIRNRQNILLVDDSRKIVSLTLWGSLIHKVDDREGQVVDFQKLSV 178
Query: 420 LAVKAGRVS 428
+ K GR+S
Sbjct: 179 KSSKLGRIS 187
>gi|413943366|gb|AFW76015.1| hypothetical protein ZEAMMB73_328795 [Zea mays]
Length = 378
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/317 (19%), Positives = 127/317 (40%), Gaps = 24/317 (7%)
Query: 285 VEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPIND 344
+E +IY +SR + A+ + + D I ++++ + P + P ++
Sbjct: 37 IETNQIYDISRFRVTAAKTTYKPIDGDKMIQFTTYTIIKPASNPPPTFPLYIYQLTPFDE 96
Query: 345 VEGM--ENNSVVDLIGVVSYISPTASL-MRKNGTETQKRTLHLRDMSGRSVELTLWGNFC 401
+E +D++G ++ ++ ++ ++ T R + + D+S +++++TLW
Sbjct: 97 IESQIQHKTKFLDVLGTITEVTALKTVHIQGQLNPTIIRDVMIEDLSRKTLKITLWAK-- 154
Query: 402 NDDGLRLQHMCDS-GVFPILAVKAGRVSDF-NGKVVGTISTTQLFIEPDFPEAHRLKEWF 459
+Q + D PILA+ G + F G + + + P PEA +
Sbjct: 155 RATSFTIQDVYDPVSKKPILALFVGCLPKFYKGVYLSGGAACHWYFNPTIPEAEAYQN-- 212
Query: 460 EKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDW----ITVSATIVYIKC 515
+ G T + + + T+ E L T D+ +ATI I
Sbjct: 213 -RRGGETIQLHLPTQPKHALQTFQPPTIEHKTLEQLLTMNPYDYPDTGYECTATITEIDT 271
Query: 516 DN-FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTW 574
N + Y +C C +K + ++CD C + ++Y L+F+ D T +
Sbjct: 272 SNTWWYPSC------TKCGRKTTPHNIA-YYCDWCKWDGYK--FKYKLKFRASDATAMAQ 322
Query: 575 VTAFQECAEEIMGMSAK 591
+ F A I+G S +
Sbjct: 323 MFCFDNIARYIVGKSCE 339
>gi|388499736|gb|AFK37934.1| unknown [Lotus japonicus]
Length = 406
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 85/396 (21%), Positives = 159/396 (40%), Gaps = 56/396 (14%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGK--VFHFDLLDSDGGEIRVTCFNA 276
I P+ L P W IK RV L + G+ K LLD GG+I+ T
Sbjct: 7 IDPVVTLCPPNHNWRIKVRVV---RLWIADGFAGENKPASMELILLDQHGGKIQATVRKL 63
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
+ ++ Q G +Y+++ L P + + I + + ++ + + IPR
Sbjct: 64 MFRKWGEQFVEGNVYIITFFHLIPNLGAYRPTDHAFRILFNPKT--KIIPAESSIIPRWG 121
Query: 337 FHFRP---INDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVE 393
F + +ND +G + +V +Y+ K+ T+ L + D G+ +E
Sbjct: 122 FSLKDSSQLND-DGFQTEYLVATSEERTYV--------KDDIVTKMMLLEISDDKGK-LE 171
Query: 394 LTLWGNFCNDDGLRLQHMCDSGV-FPILAVKAGRVSDFNGKVV--GTISTTQLFIEPDFP 450
L+G + + L ++ + + P++ ++ ++ F GK V + +++ P+
Sbjct: 172 CALFGEYVQ---IVLDYLSSNPLEKPVVVLQLAKLKSFRGKNVLQNVMKASRIIFNPEVA 228
Query: 451 EAHRLKEWFEKEGKNTQ-------------SVSISRDSLSVGRADIRKTVSQIKDEGLGT 497
EA L + G N Q SV I D ++ +KT+ + + T
Sbjct: 229 EAESLMD--RISGLNMQPNQPVGHIISPNPSVPIFEDFMNNYP---KKTICALNE----T 279
Query: 498 KEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECD 557
E +I + ++ D + Y AC C+K V + DG + C C + V+
Sbjct: 280 TEDGLFIVYGTVVGLLQDDLWWYFAC-------KCHKAVTFD-DGLYFCPGCCKHVMNVS 331
Query: 558 YRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDL 593
RY ++ ++ D T F A ++ S KD+
Sbjct: 332 ARYKIKLEVFDGTDSGNFLLFDSDAHHLIKKSCKDM 367
>gi|225446433|ref|XP_002276442.1| PREDICTED: uncharacterized protein LOC100264432 [Vitis vinifera]
gi|302143328|emb|CBI21889.3| unnamed protein product [Vitis vinifera]
Length = 104
Score = 55.5 bits (132), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 57/99 (57%)
Query: 565 QIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKV 624
++ D +G ++ F E AE I G SA +L LK + +++F +++A + LF++ V
Sbjct: 4 KVSDDSGEAILSLFNEQAERIFGCSADELDKLKPQEGEEKRFQHKMKDAIWVPNLFQIIV 63
Query: 625 KEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLKS 663
+ + +E+R T + ++ +E+RF+LD + K+K+
Sbjct: 64 AQHEYKNEKRQWITARAVVQDDFEAESRFLLDEISKMKT 102
>gi|357519361|ref|XP_003629969.1| Replication factor A protein [Medicago truncatula]
gi|355523991|gb|AET04445.1| Replication factor A protein [Medicago truncatula]
Length = 296
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 111/240 (46%), Gaps = 11/240 (4%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQF 281
I+ ++P WT+ RV + Y N++ + F L+D G +I + + +F
Sbjct: 8 ISNVSPRKQSWTLVVRVVRAWFGQDYKNKKLPFSM-EFVLIDRKGDQIGASIRRTLIYKF 66
Query: 282 YHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRP 341
Q++ G ++ +S + ++ HN+ ++ + + V+L +P + F P
Sbjct: 67 KEQLQEGMVFTISSFDVASNSGSYRPSHNEYKLNFTINTKVKLS--KTILVPINVYSFTP 124
Query: 342 INDV--EGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGN 399
DV E +NN +VD+IGV+ + R+ GT+T+ + L D +G + TL+G
Sbjct: 125 APDVFNESYDNNYLVDVIGVIIGVGVEREYERE-GTKTKMNVIEL-DSNGYRFKCTLFGE 182
Query: 400 FCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGK--VVGTISTTQLFIEPDFPEAHRLKE 457
+ + L D ++A+ +V F GK + +S+T++ P+ E L++
Sbjct: 183 YVEELNSLLS--SDESQNVVVAIMLTKVKLFQGKPALQNALSSTRITFNPEIGETKELRK 240
>gi|66771039|gb|AAY54831.1| IP08052p [Drosophila melanogaster]
Length = 189
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 89/209 (42%), Gaps = 29/209 (13%)
Query: 261 LLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTS 320
LLD + GEI F + Y Q++ G +YL+S ++ A ++ N ++F +
Sbjct: 3 LLD-ESGEITGLVFADYDNGLYGQIQTGLVYLISGFEVEKAISSYKVSDNPNQLFFCANT 61
Query: 321 MVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKR 380
+++L D IPR+++ F P+ V + VD IG+ + + M +N R
Sbjct: 62 VLELSACD--RIPREKYSFLPLLKVSSKRDQEPVDAIGICAEVG-----MLENRGGCFIR 114
Query: 381 TLHLRDMSGRSVELTLWG----NFC--NDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKV 434
L L D V L LW NF DD ++ VK R N ++
Sbjct: 115 ELLLVDPDFHPVILNLWQKEAVNFVGQRDD--------------VIVVKGARAQLHNNEM 160
Query: 435 VGTIS-TTQLFIEPDFPEAHRLKEWFEKE 462
S T + I PD P+A + EW+ +
Sbjct: 161 KLNASWYTNMQINPDIPDATGMLEWYNNQ 189
>gi|77548273|gb|ABA91070.1| hypothetical protein LOC_Os11g01460 [Oryza sativa Japonica Group]
gi|125535492|gb|EAY81980.1| hypothetical protein OsI_37160 [Oryza sativa Indica Group]
Length = 567
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 79/179 (44%), Gaps = 15/179 (8%)
Query: 232 WTIKARVTAKGELRHYNN-QRGDGKVFHFD--LLDSDGGEIRVTCFNAVADQFYHQVEAG 288
W IK +V +R +++ ++ D L+D G I + + + D + Q+
Sbjct: 16 WNIKVKV-----MRLWDSVNSATDELLSLDMILMDEQGDVIHASIWKKLIDNYKTQINES 70
Query: 289 KIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGM 348
+Y+ ++ +QK + + NDL+I + V+ E S P F F I+ ++
Sbjct: 71 SVYVFGNFKVQESQK-YRPVCNDLKITFMYNTKVKQVKETAESFPEYYFDFASIDTLQDR 129
Query: 349 ENNS--VVDLIGVVSYISPTASLMRKNGTETQK----RTLHLRDMSGRSVELTLWGNFC 401
N + D+IG+++ + P + M + T + R + L + G + LTLWG
Sbjct: 130 ANKDQHLSDVIGLLTRMKPIETRMTRKNTPNPRLAEIREIELLLLGGDKIRLTLWGQLA 188
>gi|448532896|ref|ZP_21621316.1| replication factor A [Halorubrum hochstenium ATCC 700873]
gi|445706130|gb|ELZ58015.1| replication factor A [Halorubrum hochstenium ATCC 700873]
Length = 497
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 22/189 (11%)
Query: 244 LRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+R ++ G +G+V + + D G +RVT ++ AD + EAG++ V G ++
Sbjct: 187 IRTFDRDDGSEGRVANLTVGDE-TGRVRVTLWDGKAD-LAEEFEAGEVVEVGDGYVR--- 241
Query: 303 KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSY 362
DLE+ + V+ ED +P D+ +E + VD+ G V
Sbjct: 242 ----ERDGDLELHVGDRGTVERVDEDVEYVP-------ETTDIADLEIDQTVDIAGGVIE 290
Query: 363 ISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAV 422
P + R +G+E Q R + ++D +G + + LWG+ + R + D VF + +
Sbjct: 291 TDPKRTFDRDDGSEGQVRNVRIKDETG-EIRVALWGDKAD----RDIDLADRVVFTDVEI 345
Query: 423 KAGRVSDFN 431
+ G D
Sbjct: 346 QDGWQDDLE 354
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 84/179 (46%), Gaps = 20/179 (11%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHY---NNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
IA + P M + +VTA GE+R + + + +G+V + D+ D+ G +RV ++ +A
Sbjct: 56 IADIEPGMNEVKFLGKVTAIGEVRTFERDDEEAEEGRVCNVDVADA-SGSVRVALWDDMA 114
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
++E G++ V + ++ ++ L S ++ ++DA + Q
Sbjct: 115 AAAEEELEVGQVLRV----MGRPKEGYSGLE---------VSADKVEPDEDAEVDVQVLD 161
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLW 397
+ D+ S VDL+G V + R +G+E + L + D +GR V +TLW
Sbjct: 162 TYQVEDL--TLGASDVDLVGQVLDTDSIRTFDRDDGSEGRVANLTVGDETGR-VRVTLW 217
>gi|402223238|gb|EJU03303.1| hypothetical protein DACRYDRAFT_106464 [Dacryopinax sp. DJM-731
SS1]
Length = 817
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 92/440 (20%), Positives = 167/440 (37%), Gaps = 76/440 (17%)
Query: 232 WTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA-DQFYHQVEAGKI 290
WT R+ + N+ +G + ++D D ++ + F+ VA ++ + GK+
Sbjct: 349 WTTYGRIYEISGPHRWKNETKEGIILTLKIVDKDRNKMLLGSFDPVAIERVMAEAVVGKV 408
Query: 291 YLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPR-------QQFHF---- 339
+S + P ++ F L D+ + + L Y S P + HF
Sbjct: 409 MKLSNVRVCPVKEEF--LQPDI-----LPLQMMLKYNSTFSFPNSVRPSGSKGGHFTDWF 461
Query: 340 ----RP--------INDVEGMENNSVVDLIGVVSYISPTASLMRK--------------N 373
RP I+ + G+E S V+++GVV ++ AS +K +
Sbjct: 462 LGLARPAMPMQLTGIHLLRGLEFKSRVNVLGVVLHVGQVASFSKKKCVAGEEAEGDDRDD 521
Query: 374 GTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGK 433
E ++ + L D S V LTLW +D ++ +L +K V + G
Sbjct: 522 TAERRRLEVQLVDRSLFVVCLTLWDQKADDFKVKRGD--------VLLLKKVDVVNHGGV 573
Query: 434 VVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRD-SLSVGRAD---IRKTVSQ 489
+ T+L EP+ LK+W+ ++ +S S S G D R +
Sbjct: 574 SLNAFKFTKLDFEPNISGVTELKDWYSALPEDPALKHVSSGYSASAGLRDGIVPRSSPLS 633
Query: 490 IKD---EGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRP-CNKKVMNNGDGRWH 545
IKD LG + D + I C Y C P CN+ + N
Sbjct: 634 IKDVLESNLGHGARVDTFHLEEAITGFDCQTL-YEGC-----RHPDCNRSLENREHACGI 687
Query: 546 CDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEK 605
QS + + R + ++ + AF A+EI+ + ++L +K D N+
Sbjct: 688 ASHAVQSEDDGEKRTKAKEMLK-------IMAFSPVADEILNEAPEEL--VKVRDNNEGG 738
Query: 606 FGEVVRNATFTKYLFKLKVK 625
+ ++ + T Y F ++ +
Sbjct: 739 YEALLPSKLGTIYKFTIQAR 758
>gi|357515665|ref|XP_003628121.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
gi|355522143|gb|AET02597.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
Length = 637
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 104/247 (42%), Gaps = 32/247 (12%)
Query: 219 IIPIAALNPYMGKWTIK--ARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
I P+AA+ GK IK RV + +NN D + H LLD + G+I+ +
Sbjct: 5 ITPVAAI--VAGKINIKLRVRVVHVWTVFEFNNPNEDNSI-HMLLLDDNLGKIQASTKKH 61
Query: 277 VADQFYHQVEAGKIY-----LVSRGSLK--PAQKNFNHLHNDLEIFLDMTSMVQLCYEDD 329
+ VE G Y LV++ K Q +F L++ + D
Sbjct: 62 WVPRIRSNVEEGSTYDNENVLVTKNDPKYQVTQHSFK---------LNLIDKTKFFKFDA 112
Query: 330 ASIPRQQFHFRPINDV-EGMENNSVVDLIGVVSYISPTASLMRK--NGTETQKRTLHLRD 386
+IP F F P N++ E VVD+IG L K NG ++ L L+D
Sbjct: 113 TTIPLNHFDFMPFNEILEAKREEKVVDVIG---QAVERDELKEKDVNGRRSKIMDLTLQD 169
Query: 387 MSGRSVELTLWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFI 445
R V TLW N+ + + H S V ++ ++ ++ + G ++G +T ++ I
Sbjct: 170 FESRRVRCTLWANYAERMNSFLVAHDPSSPV--VVLIQHCKLKKYQG-IMGISNTKRMTI 226
Query: 446 EPDFPEA 452
E D EA
Sbjct: 227 E-DLIEA 232
>gi|242052139|ref|XP_002455215.1| hypothetical protein SORBIDRAFT_03g006365 [Sorghum bicolor]
gi|241927190|gb|EES00335.1| hypothetical protein SORBIDRAFT_03g006365 [Sorghum bicolor]
Length = 369
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/348 (20%), Positives = 151/348 (43%), Gaps = 21/348 (6%)
Query: 257 FHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFL 316
H L+D +G ++ ++ HQ+ GK+Y +S ++ + N L I +
Sbjct: 23 LHCLLIDGEGVVMQACARPWDMERLKHQLVEGKVYALSNFGVREKLDKYMACSNGLVISM 82
Query: 317 DMTSMV-QLCYEDDASIPRQQFHFRPINDVEGMENNS--VVDLIGVVSYISPTASLMRKN 373
++V ++ +SIP F F D+ N+ D+IG + I +
Sbjct: 83 GAQTVVNEITDHAGSSIPLHSFEFVDFGDLPSRNNDRSLFTDVIGQIVSIEDEGWTWKWG 142
Query: 374 GTETQK-RTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSG-VFPILAVKAGR-VSDF 430
R +HLRD+ G+ + +TL+G+ ++ + + G P++A+ AG V +
Sbjct: 143 AWRNISFRNIHLRDLGGKQLNVTLFGDLGSN--FDAEQVFKQGQKVPVVAIFAGMLVEHY 200
Query: 431 NGKV-VGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSV--SISRDSLSVGRADIRKTV 487
G++ + + S ++ +++ D E + + + K + + + D +T+
Sbjct: 201 KGQLFLRSTSASKYYLDLDVEEVQKFRASLDGPYKPIDRLPCRLQKPLNPTELIDSWRTI 260
Query: 488 SQIKDEGLGTKEKPDWITVSATIVYIKCDN-FCYTACPIMIGDRPCNKKVMNNGDGRWHC 546
Q+++ ++ W+ AT+ I + + Y +C C+ V +G ++ C
Sbjct: 261 KQLRNLNSDELQQRTWLC-RATLKGIDSNKGWSYQSC------FHCHHSVSWDG-SKFLC 312
Query: 547 DR-CDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDL 593
+ C + + RY L I+D T V F A++++G+ A++L
Sbjct: 313 NYGCPNNKLSVRVRYKLDAVIKDETDSMNVMIFDGPAQKLVGVPAEEL 360
>gi|52076459|dbj|BAD45339.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 457
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 91/199 (45%), Gaps = 12/199 (6%)
Query: 271 VTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIF-LDMTSMVQLCYEDD 329
+T A QF + G +YL+S A++ N I + +Q
Sbjct: 53 ITVPKRFAKQFRPLLNKGSVYLISNTVAIDAKRKTNIYQCQNYILQFKHDTRIQPLESRG 112
Query: 330 ASIPRQQFHFRPINDVEG--MENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDM 387
+IP+ F F P ++V G + + ++DLIGV+SYI P + ++ + R + ++++
Sbjct: 113 LTIPKFFFDFCPFDEVLGKNISSKPLIDLIGVISYIGPYDFV--SPTSDKKLRRIKIQNL 170
Query: 388 SGRSVELTLWGNF---CNDDGLRLQHMCDSGVFPILA-VKAGRVSDFNGKVVGTISTTQL 443
++ ++ LWG + N+D L D V I A + AG+ S + S T++
Sbjct: 171 EEQTQDVLLWGQYGESFNEDA-TLHKSKDEIVVAIFAGLTAGKFSAITE--ASSSSATEI 227
Query: 444 FIEPDFPEAHRLKEWFEKE 462
+I+ D P+ + ++ E
Sbjct: 228 YIDLDTPQVREFRTSYQWE 246
>gi|448434386|ref|ZP_21586196.1| replication factor A [Halorubrum tebenquichense DSM 14210]
gi|445685302|gb|ELZ37657.1| replication factor A [Halorubrum tebenquichense DSM 14210]
Length = 493
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 22/189 (11%)
Query: 244 LRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+R ++ G +G+V + + D G +RVT ++ AD + EAG++ V G ++
Sbjct: 187 IRTFDRDDGSEGRVANLTVGDE-TGRVRVTLWDGKAD-LAAEFEAGEVVEVGDGYVR--- 241
Query: 303 KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSY 362
DLE+ + V+ ED +P D+ +E + VD+ G V
Sbjct: 242 ----ERDGDLELHVGDRGTVERVDEDVEYVP-------ETTDIADLEIDQTVDIAGGVIE 290
Query: 363 ISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAV 422
P + R +G+E Q R + ++D +G + + LWG+ + R + D VF + +
Sbjct: 291 TDPKRTFDRDDGSEGQVRNVRIKDETG-EIRVALWGDKAD----RDIDLADRVVFTDVEI 345
Query: 423 KAGRVSDFN 431
+ G D
Sbjct: 346 QDGWQDDLE 354
Score = 42.7 bits (99), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 85/179 (47%), Gaps = 20/179 (11%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHY---NNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
IA + P M + +VTA GE+R + +++ +G+V + D+ D+ G +RV ++ +A
Sbjct: 56 IADIEPGMNEVKFLGKVTAIGEVRTFERDDDEAEEGRVCNVDVADA-SGSVRVALWDDMA 114
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
++E G++ V + ++ ++ L S ++ ++DA + Q
Sbjct: 115 AAAEEELEVGQVLRV----MGRPKEGYSGLE---------VSADKVEPDEDAEVDVQVLD 161
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLW 397
+ D+ S VDL+G V + R +G+E + L + D +GR V +TLW
Sbjct: 162 TYQVEDL--TLGASDVDLVGQVLDTDSIRTFDRDDGSEGRVANLTVGDETGR-VRVTLW 217
>gi|448513831|ref|ZP_21616762.1| replication factor A [Halorubrum distributum JCM 9100]
gi|448526659|ref|ZP_21619928.1| replication factor A [Halorubrum distributum JCM 10118]
gi|445692984|gb|ELZ45147.1| replication factor A [Halorubrum distributum JCM 9100]
gi|445698886|gb|ELZ50924.1| replication factor A [Halorubrum distributum JCM 10118]
Length = 512
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 244 LRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+R ++ G +G+V + + D G +RVT ++ AD + EAG++ V G ++
Sbjct: 198 IRTFDRDDGSEGRVANLTVGDE-TGRVRVTLWDGKAD-LAEEFEAGQVVEVGDGYVR--- 252
Query: 303 KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSY 362
DLE+ + V+ ED +P DV +E VD+ G V
Sbjct: 253 ----ERDGDLELHVGDRGTVERVDEDVEYVP-------ETTDVADLEIGETVDVGGGVIE 301
Query: 363 ISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAV 422
P + R +G+E Q R + ++D +G + + LWG+ + R + D VF + +
Sbjct: 302 TDPVRTFDRDDGSEGQVRNVRIKDETG-EIRVALWGDKAD----REIELADRVVFTDVEI 356
Query: 423 KAGRVSDFN 431
+ G D
Sbjct: 357 QDGWQDDLE 365
Score = 40.8 bits (94), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 83/179 (46%), Gaps = 20/179 (11%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHY---NNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
IA + P M +VTA GE+R + + + +G+V + D+ D+ G +RV ++ +A
Sbjct: 67 IADIEPGMNDVKFLGKVTAIGEVRTFERDDEEAEEGRVCNVDVADA-SGSVRVALWDDMA 125
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
++E G++ V + ++ ++ L S ++ ++DA + Q
Sbjct: 126 AAAEEELEVGQVLRV----MGRPKEGYSGLE---------VSADKVEPDEDAEVDVQVLD 172
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLW 397
+ D+ S VDL+G V + R +G+E + L + D +GR V +TLW
Sbjct: 173 TYRVEDL--TLGASDVDLVGQVLDTDSIRTFDRDDGSEGRVANLTVGDETGR-VRVTLW 228
>gi|32565075|ref|NP_494733.2| Protein R03H10.6 [Caenorhabditis elegans]
gi|351062333|emb|CCD70303.1| Protein R03H10.6 [Caenorhabditis elegans]
Length = 324
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 41/210 (19%)
Query: 216 PSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFN 275
P+ + PIA LN + + I RVT +++R KVF F++ D +G IR F
Sbjct: 117 PAAVTPIANLNDSVDNFKIHGRVTLM------DDKRRPEKVFSFEITDVNGYTIRCVAFG 170
Query: 276 AVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDM----------------- 318
+ + Y + + Y ++ G +K +N + EI LD
Sbjct: 171 ELGVRLYGSIAKDQSYYLTGGKVKNGHTLYNQTGHAFEIILDEFPTIEPAPAVLTVPKLN 230
Query: 319 TSMVQLCYEDDASIPRQQFHFRPINDVEGMEN-NSVVDLIGVVSYISPTASLMRKNGTET 377
+ V LC ++ +Q++ +PI+ + +E N +D + P
Sbjct: 231 LNRVMLC-----NVQNEQYYRKPIDVIVAVEEINDFLDDYHPIENKPPVL---------- 275
Query: 378 QKRTLHLRDMSGRSVELTLWGNFCNDDGLR 407
R + + D S + LTLWG D G+
Sbjct: 276 --RNMVVIDDSNFRIRLTLWGYRAMDSGVE 303
>gi|448482817|ref|ZP_21605588.1| replication factor A [Halorubrum arcis JCM 13916]
gi|445821103|gb|EMA70899.1| replication factor A [Halorubrum arcis JCM 13916]
Length = 501
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 244 LRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+R ++ G +G+V + + D G +RVT ++ AD + EAG++ V G ++
Sbjct: 187 IRTFDRDDGSEGRVANLTVGDE-TGRVRVTLWDGKAD-LAEEFEAGEVVEVGDGYVR--- 241
Query: 303 KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSY 362
DLE+ + V+ ED +P D+ +E VD+ G V
Sbjct: 242 ----ERDGDLELHVGDRGTVERVDEDVEYVP-------ETTDIADLEIGETVDVGGGVIE 290
Query: 363 ISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAV 422
P + R +G+E Q R + ++D +G + + LWG+ + R + D VF + +
Sbjct: 291 TDPVRTFDRDDGSEGQVRNVRIKDETG-EIRVALWGDKAD----REIELADRVVFTDVEI 345
Query: 423 KAGRVSDFN 431
+ G D
Sbjct: 346 QDGWQDDLE 354
Score = 41.2 bits (95), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 83/179 (46%), Gaps = 20/179 (11%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHY---NNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
IA + P M +VTA GE+R + + + +G+V + D+ D+ G +RV ++ +A
Sbjct: 56 IADIEPGMNDVKFLGKVTAIGEVRTFERDDEEAEEGRVCNVDVADA-SGSVRVALWDDMA 114
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
++E G++ V + ++ ++ L S ++ ++DA + Q
Sbjct: 115 AAAEEELEVGQVLRV----MGRPKEGYSGLE---------VSADKVEPDEDAEVDVQVLD 161
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLW 397
+ D+ S VDL+G V + R +G+E + L + D +GR V +TLW
Sbjct: 162 TYRVEDL--TLGASDVDLVGQVLDTDSIRTFDRDDGSEGRVANLTVGDETGR-VRVTLW 217
>gi|391331921|ref|XP_003740388.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
Length = 217
Score = 54.3 bits (129), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/195 (21%), Positives = 89/195 (45%), Gaps = 11/195 (5%)
Query: 268 EIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE 327
+I++ FN QF ++ + Y + + + A FN + LEI L+ + ++
Sbjct: 15 DIQIVAFNDNCLQFSEILQEHQEYDIEGFACRQANPIFNTTSSKLEIVLNKGTKIRALNR 74
Query: 328 DDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRK-NGTETQKRTLHLRD 386
I + ++ ++++ M+ N +VD+ GV+ ++SP RK +G KR L + D
Sbjct: 75 ATLRIAEKSPNYVSFSELQSMKENDIVDVCGVIIHVSPVEEFTRKRDGKPIVKRELRIVD 134
Query: 387 MSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKV-VGTISTTQLFI 445
+ + + LW N + + ++V+ GR++ F G + + S +++
Sbjct: 135 EDRKILTINLWNERTNTELVEKV---------AVSVRHGRINIFRGNLSLNCESASKIDF 185
Query: 446 EPDFPEAHRLKEWFE 460
+ +L +W+E
Sbjct: 186 DLGNERLLKLSQWWE 200
>gi|414590353|tpg|DAA40924.1| TPA: hypothetical protein ZEAMMB73_767937 [Zea mays]
Length = 519
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/317 (18%), Positives = 129/317 (40%), Gaps = 24/317 (7%)
Query: 285 VEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPIND 344
+E +IY +SR + A+ + + D I + ++++ + P + P ++
Sbjct: 27 IETNQIYDISRFRVTAAKTAYKPIDGDKMIQFTIYTIIKPGSNPPPTFPLYIYQLTPFDE 86
Query: 345 VEGM--ENNSVVDLIGVVSYISPTASL-MRKNGTETQKRTLHLRDMSGRSVELTLWGNFC 401
+E +D++G ++ ++ ++ + + T R + + D+S +++++TLW
Sbjct: 87 IESQIQHKTKFLDVLGTITEVTALKTVHIEGQLSPTIIRDVMIEDLSRKTLKITLWAK-- 144
Query: 402 NDDGLRLQHMCDS-GVFPILAVKAGRVSDF-NGKVVGTISTTQLFIEPDFPEAHRLKEWF 459
+Q++ D PILA+ G + F G + + + P PEA +
Sbjct: 145 RATSFTIQNVYDPVSKKPILALFVGCLPKFYKGVYLSGGAACHWYFNPAIPEAEAYQN-- 202
Query: 460 EKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDW----ITVSATIVYIKC 515
+ G T + + + T+ E L T D+ + T+ I
Sbjct: 203 -RHGGETIQLHLPTQPEHALQTFQPPTIEHKTLEQLLTMNPYDYPDTGYECTVTVTEIDT 261
Query: 516 DN-FCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTW 574
N + Y +C C +K + + ++CD C + ++Y L+F+ D T +
Sbjct: 262 SNTWWYPSC------TKCGRKTTPH-NTTYYCDLCKWDGYK--FKYKLKFRASDATAIAQ 312
Query: 575 VTAFQECAEEIMGMSAK 591
+ F A I+G S +
Sbjct: 313 MFCFDNIARYIVGKSCE 329
>gi|308081030|ref|NP_001182790.1| uncharacterized protein LOC100500983 [Zea mays]
gi|195623976|gb|ACG33818.1| hypothetical protein [Zea mays]
Length = 305
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 83/180 (46%), Gaps = 8/180 (4%)
Query: 225 LNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL--DSDGGEIRVTCFNAVADQFY 282
L P+ I+ V+ K R + G + H D++ D +G I V +A+Q
Sbjct: 9 LAPHKIHAKIQVHVSRKWLFRGATDS---GPLQHVDMVLSDREGNAIYVEIPGNLAEQKA 65
Query: 283 HQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPI 342
+E G +Y +SR + A+ F + D I ++V+ + P +
Sbjct: 66 TNIEEGGVYDISRFRVCAAKTVFKIVDGDKMIQFTFHTIVKRVTSPPTTFPLYVYRLTSF 125
Query: 343 NDVEG--MENNSVVDLIGVVSYISP-TASLMRKNGTETQKRTLHLRDMSGRSVELTLWGN 399
+ +E N+ VD++GV++ I T +R T+T RT+ + D+S +++++TLW +
Sbjct: 126 DLIEPHVQTTNNFVDVLGVITEIHELTPVHVRSQLTQTVTRTIIIEDLSNKTMKITLWAD 185
>gi|414868467|tpg|DAA47024.1| TPA: hypothetical protein ZEAMMB73_652886 [Zea mays]
Length = 710
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 118/278 (42%), Gaps = 30/278 (10%)
Query: 231 KWTIKARVTAKG--ELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA----DQFYHQ 284
K++I ARV K E R+++ Q HF L D +G +I + +V + H+
Sbjct: 86 KYSIVARVEVKFPIEPRYHDRQ-------HFILSDINGAKIEAITYVSVTVKHFNNLLHE 138
Query: 285 VEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPIND 344
++ V G L P + NF HL+ +E++ + ++V+ P + F ++D
Sbjct: 139 KHVYNMHNVKFG-LHPGEFNFRHLNGPMELYFNQQTIVEPYTFPIQMPPFPKHIFFNLDD 197
Query: 345 VEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDD 404
+ + N S+VD++ +V ++ M R + + D G + +WG+ N +
Sbjct: 198 IAELPNRSLVDIMAIVVHMDTIHRTMWG-----PFRKIVIMDARGSLHIIKVWGDLLNKN 252
Query: 405 GLRLQHMC-DSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEG 463
LR D G+ + R +F + + T + P H F + G
Sbjct: 253 ALRWALAKEDYGIIIGTMFRRFRKQEF----LESSDHTAIHFNPFHHNTHYFGRVFMENG 308
Query: 464 KNTQSVSISRDSLSVGR---ADIRKTVSQIKDEGLGTK 498
+ T++ + LS GR +I T++ K + G+K
Sbjct: 309 EPTETYQM---ELSDGRTPLTNISNTITIGKADENGSK 343
>gi|321457156|gb|EFX68248.1| hypothetical protein DAPPUDRAFT_330274 [Daphnia pulex]
Length = 227
Score = 53.9 bits (128), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 5/132 (3%)
Query: 327 EDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRD 386
E+ A P F+F P + + +EN S+VD+IG+V ++ + K ++ T D
Sbjct: 55 EEAAEKPTITFNFVPFDQLTNLENISIVDVIGLVLHLQEKVLVETKTTKISRSLTAEFVD 114
Query: 387 MSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIE 446
+ V L N+ G L+ + D + + VK + F + + T+S+T + I
Sbjct: 115 STNTEVRLHSLFNY---RGSLLEKVADKCIVALSGVKIS--NKFGRRYLETLSSTVVQIN 169
Query: 447 PDFPEAHRLKEW 458
PD E L+EW
Sbjct: 170 PDMTEVRELREW 181
>gi|222619510|gb|EEE55642.1| hypothetical protein OsJ_04010 [Oryza sativa Japonica Group]
Length = 321
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 104/256 (40%), Gaps = 13/256 (5%)
Query: 247 YNNQRGDGKVFHFDL--LDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKN 304
Y D H DL +D G + AD+F ++ K+Y S+ + P++
Sbjct: 4 YTGTADDLPPIHVDLVLIDEKGNAMYAEIPGVEADKFRPLLQESKVYTFSKFLILPSKPA 63
Query: 305 FNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH---FRPINDVEGMENNSVVDLIGVVS 361
+ N I L + V+ E A P F+ F ++ GM+ D+IG++
Sbjct: 64 YKPFPNKYMIKLTPWTNVEQVNEVPADFPSHVFNLVQFSYLSLRVGMQE-YFTDVIGMII 122
Query: 362 YISPTASL-MRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMC--DSGVFP 418
+S A + M ++T KR + LRD++ V+L LWG D H D+ V
Sbjct: 123 GVSKLAYVRMASKTSDTPKRVIALRDLANCEVKLVLWGEHAPDFDADAVHSVGQDNAVVG 182
Query: 419 ILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSV 478
I + + N + + S + ++ D PE ++ + Q +S +S
Sbjct: 183 IFVDTLMKAYN-NEETLSGGSACKWYLNEDIPEINQFFDSLGDSAPKIQWISTGAESFGS 241
Query: 479 GRADIR---KTVSQIK 491
+ R K+V+ +K
Sbjct: 242 SQRPARLEHKSVADLK 257
>gi|414881914|tpg|DAA59045.1| TPA: hypothetical protein ZEAMMB73_740363 [Zea mays]
Length = 240
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 82/169 (48%), Gaps = 12/169 (7%)
Query: 233 TIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGE--IRVTCFNAVADQFYHQVEAGKI 290
T++ V + E R + DG V H D++ +D E I V + +Q ++ K+
Sbjct: 22 TVQVEVNRRWEFRGITD---DGHVLHVDMILTDAMENAIYVEVPAKLLEQKGSLLQLNKV 78
Query: 291 YLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMEN 350
Y + R + A+ + ++ L I+ + S++++C + ++ P ++ P E ++
Sbjct: 79 YYIRRFRVANAKSQYKVINAPLMIYFTVYSIIEVCRDPPSTFPLYVYNLIP---YEAIDA 135
Query: 351 NSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGN 399
N VS I+P ++ NG + R + ++++S +++TLWGN
Sbjct: 136 NGPKSKDFHVSEINP----IQLNGKSSIYRNVFIKNLSHDIIKVTLWGN 180
>gi|448451265|ref|ZP_21592748.1| replication factor A [Halorubrum litoreum JCM 13561]
gi|445810699|gb|EMA60715.1| replication factor A [Halorubrum litoreum JCM 13561]
Length = 512
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 244 LRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+R ++ G +G+V + + D G +RVT ++ AD + EAG++ V G ++
Sbjct: 198 IRTFDRDDGSEGRVANLTVGDE-TGRVRVTLWDGKAD-LAEEFEAGQVVEVGDGYVR--- 252
Query: 303 KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSY 362
DLE+ + V+ ED +P D+ +E VD+ G V
Sbjct: 253 ----ERDGDLELHVGDRGTVERVDEDVEYVP-------ETTDIADLEIGETVDVGGGVIE 301
Query: 363 ISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAV 422
P + R +G+E Q R + ++D +G + + LWG+ + R + D VF + +
Sbjct: 302 TDPVRTFDRDDGSEGQVRNVRIKDETG-EIRVALWGDKAD----REIELADRVVFTDVEI 356
Query: 423 KAGRVSDFN 431
+ G D
Sbjct: 357 QDGWQDDLE 365
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 83/179 (46%), Gaps = 20/179 (11%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHY---NNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
IA + P M +VTA GE+R + + + +G+V + D+ D+ G +RV ++ +A
Sbjct: 67 IADIEPGMNDVKFLGKVTAIGEVRTFERDDEEAEEGRVCNVDVADA-SGSVRVALWDDMA 125
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
++E G++ V + ++ ++ L S ++ ++DA + Q
Sbjct: 126 AAAEEELEVGQVLRV----MGRPKEGYSGLE---------VSADKVEPDEDAEVDVQVLD 172
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLW 397
+ D+ S VDL+G V + R +G+E + L + D +GR V +TLW
Sbjct: 173 TYRVEDL--TLGASDVDLVGQVLDTDSIRTFDRDDGSEGRVANLTVGDETGR-VRVTLW 228
>gi|448427497|ref|ZP_21583812.1| replication factor A [Halorubrum terrestre JCM 10247]
gi|445678184|gb|ELZ30678.1| replication factor A [Halorubrum terrestre JCM 10247]
Length = 512
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 244 LRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+R ++ G +G+V + + D G +RVT ++ AD + EAG++ V G ++
Sbjct: 198 IRTFDRDDGSEGRVANLTVGDE-TGRVRVTLWDGKAD-LAEEFEAGQVVEVGDGYVR--- 252
Query: 303 KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSY 362
DLE+ + V+ ED +P D+ +E VD+ G V
Sbjct: 253 ----ERDGDLELHVGDRGTVERVDEDVEYVP-------ETTDIADLEIGETVDVGGGVIE 301
Query: 363 ISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAV 422
P + R +G+E Q R + ++D +G + + LWG+ + R + D VF + +
Sbjct: 302 TDPVRTFDRDDGSEGQVRNVRIKDETG-EIRVALWGDKAD----REIELADRVVFTDVEI 356
Query: 423 KAGRVSDFN 431
+ G D
Sbjct: 357 QDGWQDDLE 365
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 83/179 (46%), Gaps = 20/179 (11%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHY---NNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
IA + P M +VTA GE+R + + + +G+V + D+ D+ G +RV ++ +A
Sbjct: 67 IADIEPGMNDVKFLGKVTAIGEVRTFERDDEEAEEGRVCNVDVADA-SGSVRVALWDDMA 125
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
++E G++ V + ++ ++ L S ++ ++DA + Q
Sbjct: 126 AAAEEELEVGQVLRV----MGRPKEGYSGLE---------VSADKVEPDEDAEVDVQVLD 172
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLW 397
+ D+ S VDL+G V + R +G+E + L + D +GR V +TLW
Sbjct: 173 TYRVEDL--TLGASDVDLVGQVLDTDSIRTFDRDDGSEGRVANLTVGDETGR-VRVTLW 228
>gi|413949178|gb|AFW81827.1| hypothetical protein ZEAMMB73_139507 [Zea mays]
Length = 263
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 108/248 (43%), Gaps = 22/248 (8%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL--DSDGGEIRVTCFNAVA 278
PIA L+P I+ + K E R N DG + H +L+ D G I A+
Sbjct: 5 PIAELDPKSTNAAIRVCIIRKWEFRGATN---DGPLRHVNLILADEQGTAIHAEIQAALV 61
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D ++ K+Y + R + P++ + + N + I + + ++ + + PR +
Sbjct: 62 DDKGSLIQIDKVYELKRFRVTPSRNYYKPVDNSMMIQFTLYTQAKVVEDPPPTFPRYAYK 121
Query: 339 FRPINDVEGMENNS--VVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTL 396
++ +N ++D++G+++ I + N R + L+D++ S ++TL
Sbjct: 122 LTSFENIGNNVDNKTYLIDVLGILTEIGSLHHVGYNNSNII--RDIFLKDINNTSTKVTL 179
Query: 397 WGNFCNDDGLRLQHMC-DSGVFPILAVKAGRVSD-FNGKVVGT---------ISTTQLFI 445
W + + ++C D+ P++ + G ++ F G V+ T + T ++
Sbjct: 180 WRH--QASSFSVDNICDDNDNKPVVVLFVGCLAKRFKGSVLNTSKLQLHYLHLQTQYKYV 237
Query: 446 EPDFPEAH 453
P+ EA+
Sbjct: 238 TPNVGEAY 245
>gi|297825773|ref|XP_002880769.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297326608|gb|EFH57028.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 344
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 8/121 (6%)
Query: 544 WHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQND 603
W CD+C+ +V + RY L + D+TG + + F E+I+G+ A DL + +D
Sbjct: 88 WRCDKCNTNVSSVEARYWLHLDVMDNTGESKLMLFDSFVEQIIGIPACDLVDPTTEELDD 147
Query: 604 E-KFGEVVRNATFTKYLFKLKVKEETFS---DEQRVKSTVVKAERYNYSS---ETRFILD 656
+VV+N Y F L V+++ S DE +V S V+ ++ N+ + E + +D
Sbjct: 148 PLPLPDVVKNIIGKTYQFALCVEQDNISRGNDEYKV-SEVLTSQNLNHPALEPEVDYPVD 206
Query: 657 L 657
L
Sbjct: 207 L 207
>gi|190702380|gb|ACE75273.1| retroelement polyprotein [Glyptapanteles flavicoxis]
Length = 1380
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 744 CSSCGAVGHSSMNCPSIMSGPGQ-SSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCP 802
C SCG +GH S++CPSI G + +S A SS + T C+KC GH A CP
Sbjct: 250 CHSCGKLGHRSIDCPSINKGKSERASNSQVATKPSSQKSVVT---CFKCGVVGHVASRCP 306
Query: 803 SL 804
SL
Sbjct: 307 SL 308
>gi|448497562|ref|ZP_21610515.1| replication factor A [Halorubrum coriense DSM 10284]
gi|445699793|gb|ELZ51813.1| replication factor A [Halorubrum coriense DSM 10284]
Length = 493
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 244 LRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+R ++ G +G+V + L D G +RVT ++ AD + AG++ V G ++
Sbjct: 187 IRTFDRDDGSEGRVANLTLGDE-TGRVRVTLWDGKAD-LAEEFAAGEVVEVGDGYVR--- 241
Query: 303 KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSY 362
DLE+ + V+ ED +P D+ +E + VD+ G V
Sbjct: 242 ----ERDGDLELHVGDRGTVERVDEDVEYVP-------ETTDIADLEIDQTVDVGGGVIE 290
Query: 363 ISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAV 422
P + R +G+E Q R + ++D +G + + LWG+ + R + D VF + V
Sbjct: 291 TDPKRTFDRDDGSEGQVRNVRIKDETG-EIRVALWGDKAD----REIELADRVVFTDVEV 345
Query: 423 KAGRVSDFN 431
+ G D
Sbjct: 346 QDGWQDDLE 354
Score = 46.2 bits (108), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 20/179 (11%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGD---GKVFHFDLLDSDGGEIRVTCFNAVA 278
IA + M +VTA GE+R + D G+V + D+ D+ G +RV ++ +A
Sbjct: 56 IADIEQGMNDVKFLGKVTAIGEVRTFERDDEDAEEGRVCNVDVADA-SGSVRVALWDDMA 114
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
Q+E G++ V + ++ ++ L S ++ ++DA + Q
Sbjct: 115 AAAEEQLEVGQVLRV----MGRPKEGYSGLE---------VSADKVEPDEDAEVDVQVLD 161
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLW 397
+ D+ S VDL+G V + R +G+E + L L D +GR V +TLW
Sbjct: 162 TYRVEDL--ALGASDVDLVGQVLDTDSIRTFDRDDGSEGRVANLTLGDETGR-VRVTLW 217
>gi|115437564|ref|NP_001043325.1| Os01g0556600 [Oryza sativa Japonica Group]
gi|113532856|dbj|BAF05239.1| Os01g0556600 [Oryza sativa Japonica Group]
Length = 1932
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 78/174 (44%), Gaps = 8/174 (4%)
Query: 230 GKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL--DSDGGEIRVTCFNAVADQFYHQVEA 287
G T+ RV+ L Y++Q +G + H L+ G I + +F +
Sbjct: 1183 GNPTLLVRVS---RLWEYHDQDDEGDLRHIGLVLVGEKGYAIAAMIYPPWGKKFKPLISE 1239
Query: 288 GKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEG 347
GK+YL++ +KP K++ + N + I + ++ + A + P ++
Sbjct: 1240 GKVYLLTYYRVKPCTKHYRPVDNKMMINFTRWTGIEEYVDVQAGFGHYAYTLTPYQELRS 1299
Query: 348 M--ENNSVVDLIGVVSYISPTASL-MRKNGTETQKRTLHLRDMSGRSVELTLWG 398
+S D+IGV++ IS ++ R +++ KR +++R+ + + LWG
Sbjct: 1300 RVDRKDSFTDVIGVITDISSVTTVRTRVRDSDSLKRNVYMRNAENETTNIVLWG 1353
>gi|385305380|gb|EIF49361.1| subunit of heterotrimeric replication protein a [Dekkera
bruxellensis AWRI1499]
Length = 138
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 13/136 (9%)
Query: 299 KPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIG 358
KP N H + E+ D ++++ C DD +P+ F F ++ V ++N +V+D++G
Sbjct: 3 KPQYSNLKHQY---ELQFDRDTVIEEC-NDDXGVPKLHFDFVKLDQVXNLDNGTVIDVLG 58
Query: 359 VVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVF 417
++ + ++ R G +R + + D + +V + LW + L +G
Sbjct: 59 ILKEVHDKQEIVSRSTGKPFDRREVEIVDDTHFAVTVALWNKHAREFNLS------TG-- 110
Query: 418 PILAVKAGRVSDFNGK 433
++A K RV D+ GK
Sbjct: 111 TVVAFKGARVQDYGGK 126
>gi|408381003|ref|ZP_11178553.1| Replication factor-A domain-containing protein [Methanobacterium
formicicum DSM 3637]
gi|407816268|gb|EKF86830.1| Replication factor-A domain-containing protein [Methanobacterium
formicicum DSM 3637]
Length = 791
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 119/284 (41%), Gaps = 52/284 (18%)
Query: 346 EGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDG 405
E +E + V L G V ++ + +G+ R++ + D SG V ++LW + N
Sbjct: 533 ELVEGDRDVSLFGRVLSVAEPTQFTKSDGSTGIVRSMEIADDSG-VVRVSLWDDQAN--- 588
Query: 406 LRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKN 465
G + ++ RV+ N + ++ T + +P+ EA + E EGK
Sbjct: 589 ----TSFKEG--EAVKIENPRVNLRNNNIELSVGRTTIITKPEEDEAS-VPSLDEIEGKL 641
Query: 466 TQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPI 525
S +I DI + IK VS +V I+ + CP
Sbjct: 642 YPSKNI---------GDIEEGDQSIK--------------VSGEVVDIRGSKILFEMCP- 677
Query: 526 MIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEI 585
CNK+V N D + CD C + + + + I+ ++D TG +T F++ AEE+
Sbjct: 678 -----NCNKRV-NWVDNAYICDICGEEIKKPNMLMIISLMLEDDTGTISITFFRKAAEEV 731
Query: 586 MGMSAKDLYSLKYVDQN----DEKFGE-------VVRNATFTKY 618
+GM+ + + + +EK G+ V+ +A+F +Y
Sbjct: 732 LGMTTAEAEEIIATTGDEGSLEEKVGDLVGRQITVIADASFDEY 775
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 24/182 (13%)
Query: 222 IAALNPYMGKWTIK--ARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA--- 276
I LN G + ARV +R ++ DGKV +L D D G ++ T +N
Sbjct: 181 ITPLNDIKGDMEVNVIARVIRIPRVRSFDRNGRDGKVASLELQD-DSGTMQFTLWNKDTN 239
Query: 277 -VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQ 335
+ D + +A K+ L ++ ++ + + +H S + + +P
Sbjct: 240 LIDDLELKEGDAIKV-LGAQSRVRNGEVSLSH------------SWIGRIVKGKFDVPEY 286
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
I D M N V L+G+V+ + T + R +GT + +++ L+D +G + LT
Sbjct: 287 HEDILKIGDAHEMRN---VTLVGLVNKVYDTITFERDDGTTGKVKSMELQDDTG-VIRLT 342
Query: 396 LW 397
LW
Sbjct: 343 LW 344
>gi|297825951|ref|XP_002880858.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297326697|gb|EFH57117.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 395
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 8/121 (6%)
Query: 544 WHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQND 603
W CD+C+ +V + RY L + D+TG + + F E+I+G+ A DL + +D
Sbjct: 139 WRCDKCNTNVSSVEARYWLHLDVMDNTGESKLMLFDSFVEQIIGIPACDLVDPTTEELDD 198
Query: 604 E-KFGEVVRNATFTKYLFKLKVKEETFS---DEQRVKSTVVKAERYNYSS---ETRFILD 656
+VV+N Y F L V+++ S DE +V S V+ ++ N+ + E + +D
Sbjct: 199 PLPLPDVVKNIIGKTYQFALCVEQDNISRGNDEYKV-SEVLTSQNLNHPALEPEVDYPVD 257
Query: 657 L 657
L
Sbjct: 258 L 258
>gi|448466840|ref|ZP_21599262.1| replication factor A [Halorubrum kocurii JCM 14978]
gi|445813266|gb|EMA63246.1| replication factor A [Halorubrum kocurii JCM 14978]
Length = 495
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 244 LRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+R ++ G +G+V + + D G +RVT ++ AD + EAG++ V G ++
Sbjct: 187 IRTFDRDDGSEGRVANLTVGDE-TGRVRVTLWDGKAD-LADEFEAGEVVEVGDGYVR--- 241
Query: 303 KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSY 362
DLE+ + V+ ED +P DV +E VD+ G V
Sbjct: 242 ----ERDGDLELHVGDRGTVERVDEDVEYVP-------ETTDVADLEIGETVDIGGGVIE 290
Query: 363 ISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAV 422
P + R +G+E Q R + ++D +G + + LWG+ + R + D VF + +
Sbjct: 291 TDPKRTFDRDDGSEGQVRNVRIKDDTG-EIRVALWGDKAD----REIELADRVVFTDVEI 345
Query: 423 KAGRVSDFN 431
+ G D
Sbjct: 346 QDGWQDDLE 354
>gi|242093032|ref|XP_002437006.1| hypothetical protein SORBIDRAFT_10g016776 [Sorghum bicolor]
gi|241915229|gb|EER88373.1| hypothetical protein SORBIDRAFT_10g016776 [Sorghum bicolor]
Length = 958
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 6/157 (3%)
Query: 247 YNNQRGDGKVFHFDL--LDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKN 304
+ + + K+ H DL +D +G I + +QF ++ G +Y +S ++ + K
Sbjct: 486 FYDPHDESKLLHCDLVLIDEEGNCIHAQIYPPDHEQFKPLIKEGSVYNLSYFRVRKSGK- 544
Query: 305 FNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVE--GMENNSVVDLIGVVSY 362
+ + ND I + + E + P + P+ + E D+IGVV+
Sbjct: 545 YRPVDNDHMINFTRWTSAEEVVEIPPAFPMYTYSLTPMEQLPPCAEETTFFTDVIGVVTM 604
Query: 363 ISPTASL-MRKNGTETQKRTLHLRDMSGRSVELTLWG 398
+S +SL +R +E+ KRT+ + + SG S+++ LWG
Sbjct: 605 LSNVSSLRIRTRQSESLKRTVTICNASGASLDVVLWG 641
>gi|222478550|ref|YP_002564787.1| replication factor A [Halorubrum lacusprofundi ATCC 49239]
gi|222451452|gb|ACM55717.1| nucleic acid binding OB-fold tRNA/helicase-type [Halorubrum
lacusprofundi ATCC 49239]
Length = 501
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 244 LRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+R ++ G +G+V + + D G +RVT ++ AD + EAG++ V G ++
Sbjct: 187 IRTFDRDDGSEGRVANLTVGDE-TGRVRVTLWDDKAD-LVEEFEAGEVVEVGDGYVR--- 241
Query: 303 KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSY 362
DLE+ + V+ ED +P D+ +E VD+ G V
Sbjct: 242 ----ERDGDLELHVGDRGTVERVDEDVEYVP-------ETTDIAELEIGETVDIGGGVIE 290
Query: 363 ISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAV 422
P + R +G+E Q R + ++D +G + + LWG+ + R + D VF + V
Sbjct: 291 TDPKRTFDRDDGSEGQVRNVRIKDDTG-EIRVALWGDKAD----REIELADRVVFTDVEV 345
Query: 423 KAGRVSDFN 431
+ G D
Sbjct: 346 QDGWQDDLE 354
Score = 45.8 bits (107), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 20/184 (10%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGD---GKVFHFDLLDSDGGEIRVTCFNAVA 278
IA + P M +VT+ G++R + D G+V + D+ D+ G +RV ++ +A
Sbjct: 56 IADIEPGMNDVKFLGKVTSIGDIRTFERDDEDAEEGRVCNVDVADA-SGSVRVALWDDMA 114
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
Q+E G++ V + ++ ++ L S ++ ++DA + Q
Sbjct: 115 AAAEEQLEVGQVLRV----MGRPKEGYSGLE---------VSADKVEPDEDAEVDVQVLD 161
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
+ D+ S VDL+G V + R +G+E + L + D +GR V +TLW
Sbjct: 162 TYRVEDL--SLGASDVDLVGQVLDTDSIRTFDRDDGSEGRVANLTVGDETGR-VRVTLWD 218
Query: 399 NFCN 402
+ +
Sbjct: 219 DKAD 222
>gi|302825407|ref|XP_002994322.1| hypothetical protein SELMODRAFT_432246 [Selaginella moellendorffii]
gi|300137797|gb|EFJ04619.1| hypothetical protein SELMODRAFT_432246 [Selaginella moellendorffii]
Length = 105
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 517 NFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVT 576
+F Y AC ++ R C KKV + W C+ CD + ++Y LQ I D TG W
Sbjct: 31 DFYYPACMKVVNGRQCGKKVTQVSESMWQCNSCDTDSGDIHFKYALQLCILDSTGHIWAV 90
Query: 577 AFQECAEEIMGMSA 590
AF + EI+ M A
Sbjct: 91 AFDD-TNEIVEMPA 103
>gi|391338168|ref|XP_003743433.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Metaseiulus occidentalis]
Length = 301
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/229 (19%), Positives = 106/229 (46%), Gaps = 16/229 (6%)
Query: 234 IKARVTAKGELRHYNNQRGDGKVFHFDLLDSDG-GEIRVTCFNAVADQFYHQVEAGKIYL 292
+ R+ +KG +R + G++F F + SDG +I+ + +++ ++ G+ Y
Sbjct: 70 VNGRIESKGTIRTWKKDNEQGQLFSFVM--SDGSADIQAVVSGDMCTEYHDRITVGQCYQ 127
Query: 293 VSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNS 352
++ +K +N ++ E L +T + ++ + IP+ + ++ + N
Sbjct: 128 ITAFKVKETNPAYNPTNHPCE--LHLTKISKMVPIQGSHIPKSIVSRTTLAEIAKQDANK 185
Query: 353 VVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCND-DGLRLQHM 411
VV++ +V + S+ ++G K+++ L D + + + L LW + DG ++
Sbjct: 186 VVNVEAIVYEVGKPQSISCRDGITRMKQSVLLVDETLKIISLGLWAEAVQELDG--MESN 243
Query: 412 CDSGVFPILAVKAGRVSDFNGKV-VGTISTTQLFIEPDFPEAHRLKEWF 459
C + V+ +V ++ GK + ++S T + EP A ++ W+
Sbjct: 244 C-------VLVRNLQVKEYAGKKQLNSMSGTVVDKEPASETAKSMRLWW 285
>gi|414879411|tpg|DAA56542.1| TPA: hypothetical protein ZEAMMB73_367851 [Zea mays]
Length = 415
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 81/169 (47%), Gaps = 12/169 (7%)
Query: 233 TIKARVTAKGELRHYNNQRGDGKVFHFDLL--DSDGGEIRVTCFNAVADQFYHQVEAGKI 290
T++ V + E R + DG V H D++ D+ G I + +Q +++ K+
Sbjct: 17 TVQVEVNRRWEFRGIGD---DGPVLHVDMILTDATGNAIYAELPAKLLEQKGSLLQSNKV 73
Query: 291 YLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMEN 350
Y + R + A+ + + L I+ + S++++C + ++ P ++ P E ++
Sbjct: 74 YYIRRFRVANAKSQYKVIDAPLMIYFTVYSIIEVCRDPPSTFPLYVYNLIP---YEAIDA 130
Query: 351 NSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGN 399
N VS I+P ++ +G + R + ++++S +++TLWGN
Sbjct: 131 NGPKSKDFHVSEINP----IQLSGKSSIYRNVFIKNLSNDIIKVTLWGN 175
>gi|413935698|gb|AFW70249.1| hypothetical protein ZEAMMB73_039348 [Zea mays]
Length = 416
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 92/198 (46%), Gaps = 19/198 (9%)
Query: 294 SRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEG--MENN 351
SR ++ A++ F +H D I ++++ + ++ PR +H P++ +E +N
Sbjct: 48 SRFTISSARQMFKPVHIDKMIHFTYHTIIKASLDSPSTFPRYVYHLTPLHQIESYIQKNE 107
Query: 352 SVVDLIGVVSYIS---PTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGN----FCNDD 404
+D++GV++ +S P + R++ ++ + ++D++ ++ LTLW F DD
Sbjct: 108 YFLDVLGVITQVSALKPVRTQTRESSNVIKE--IIIKDINDVTMRLTLWAERAKAFKLDD 165
Query: 405 GLR-LQHMCDSGVFPILAVKAGRVS-DFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKE 462
L+ PI+ + G ++ +F G + +T + + PD EA + F +
Sbjct: 166 VYNPLEQK------PIVTLFVGCLAKNFQGAYLNGGTTCRWYFNPDIKEAAPYYQRFGSQ 219
Query: 463 GKNTQSVSISRDSLSVGR 480
Q S LSV +
Sbjct: 220 KVKLQIPSEQEQQLSVAK 237
>gi|297727013|ref|NP_001175870.1| Os09g0456900 [Oryza sativa Japonica Group]
gi|255678952|dbj|BAH94598.1| Os09g0456900 [Oryza sativa Japonica Group]
Length = 206
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 77/170 (45%), Gaps = 8/170 (4%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL--DSDGGEIRVTCFNAVAD 279
I+ L P +G TI+ RV+ E R N++ ++H L+ D G I + +
Sbjct: 20 ISKLEPGLGNPTIRLRVSRFWEFRDQNDE---NILYHLGLVLVDGTGASIAAQIMPPLDE 76
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
F + GK+Y ++ ++ + + N I L S ++ C + + P +
Sbjct: 77 LFAPAITEGKVYDLTFYRVRQCTSQYRPVGNMQSIALTKWSTLEECTDVPENFPNYVYSL 136
Query: 340 RPINDVEGMEN--NSVVDLIGVVSYISPTASL-MRKNGTETQKRTLHLRD 386
P + + G N +S D IG+++ I+ + R E+ KR++++RD
Sbjct: 137 TPYDQLRGRVNRKDSFTDAIGIITEITSVTPIQTRTKDGESLKRSIYIRD 186
>gi|297743678|emb|CBI36561.3| unnamed protein product [Vitis vinifera]
Length = 107
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 358 GVVSYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGV 416
GVV +SPT + RK+ + KR + D + ++V ++LW + + G L D
Sbjct: 15 GVVQSVSPTMRIRRKSHNDIVPKRDITFADKTKKTVVVSLWNDHATNVGQELLDNADK-- 72
Query: 417 FPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPE 451
FPI+A+K+ +V DF + T+S + + + PD E
Sbjct: 73 FPIVAIKSLKVGDFQVVSLSTLSESIVLVNPDTRE 107
>gi|448307001|ref|ZP_21496902.1| replication factor A [Natronorubrum bangense JCM 10635]
gi|445596548|gb|ELY50633.1| replication factor A [Natronorubrum bangense JCM 10635]
Length = 483
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 18/184 (9%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
+ AL+ + + V G +R ++ G +GKV + L DS G +RVT ++ AD
Sbjct: 164 VEALSLGLSNVNLVGLVLDTGSVRTFDRDDGSEGKVSNLTLGDS-TGRVRVTLWDEQAD- 221
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
++E+ V G +K + LE+ + V+ ED +P
Sbjct: 222 LATEIESNTTVEVIDGYVKERDGS-------LELHVGNRGAVEEVDEDVEYVPEST---- 270
Query: 341 PINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNF 400
PI E +E VD+ GVV P + R +G+E Q R + ++D +G + + LWG
Sbjct: 271 PI---EAVEIGQTVDIAGVVRSADPKRTFDRDDGSEGQVRNIRVQDATG-DIRVALWGEK 326
Query: 401 CNDD 404
+ D
Sbjct: 327 ADHD 330
Score = 40.4 bits (93), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 93/191 (48%), Gaps = 25/191 (13%)
Query: 210 VGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHY--NNQRGDGKVFHFDLLDSDGG 267
VG+SEV IA + P M + A+VT+ GE+R + + + DG+V + ++ D G
Sbjct: 48 VGESEVGG----IADIEPGMEEAKFVAKVTSIGEVRTFERDGEDEDGRVVNVEVADETGA 103
Query: 268 EIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE 327
+R ++ A+ ++E G++ + +P ++ F+ +EI +D Q+ +
Sbjct: 104 -VRAAFWDDHAEAAIEELEEGQVLRIKG---RP-KEGFSG----VEISVD-----QVEPD 149
Query: 328 DDASIPRQQFHFRPINDVE-GMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRD 386
D I Q + + G+ N V+L+G+V + R +G+E + L L D
Sbjct: 150 PDTEIEVQVTDTHTVEALSLGLSN---VNLVGLVLDTGSVRTFDRDDGSEGKVSNLTLGD 206
Query: 387 MSGRSVELTLW 397
+GR V +TLW
Sbjct: 207 STGR-VRVTLW 216
>gi|448396828|ref|ZP_21569276.1| replication factor A [Haloterrigena limicola JCM 13563]
gi|445673357|gb|ELZ25918.1| replication factor A [Haloterrigena limicola JCM 13563]
Length = 482
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 75/162 (46%), Gaps = 18/162 (11%)
Query: 244 LRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+R ++ G +GKV + L DS G +RVT ++ AD+ ++EAG V G +K
Sbjct: 186 VRTFDRDDGSEGKVSNLVLGDS-TGRVRVTLWDEQADR-ATELEAGATVEVIDGYVK--- 240
Query: 303 KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSY 362
LE+ + V+ ED +P PI D +E VD+ GVV
Sbjct: 241 ----ERDGQLELHVGNRGAVEEVDEDVEYVPEST----PIED---LEIGQTVDIAGVVRS 289
Query: 363 ISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDD 404
P + R +G+E Q R + ++D +G + + LWG + D
Sbjct: 290 ADPKRTFDRDDGSEGQVRNIRVQDATG-DIRVALWGEKADTD 330
>gi|302825355|ref|XP_002994300.1| hypothetical protein SELMODRAFT_432229 [Selaginella moellendorffii]
gi|300137821|gb|EFJ04635.1| hypothetical protein SELMODRAFT_432229 [Selaginella moellendorffii]
Length = 176
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 371 RKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDF 430
+ +G ++R L L D SG S+++ LW + D+G ++ G PI+ VK R+SD+
Sbjct: 57 KDSGAFMRRRMLSLSDESGHSIDMCLWDSKAEDEGSEIEEKPGQGERPIVCVKGSRISDY 116
Query: 431 NGKVVGTISTTQLFIEPDF 449
NGK + T + F DF
Sbjct: 117 NGKFISV--TVKEFQTGDF 133
>gi|321453826|gb|EFX65027.1| hypothetical protein DAPPUDRAFT_333603 [Daphnia pulex]
Length = 284
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 123/286 (43%), Gaps = 39/286 (13%)
Query: 211 GKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIR 270
G+S V I + L+PY+ +W I+ RV L + +GD +F+F LLDS G ++
Sbjct: 29 GQSVVKEVFIDVNKLSPYLRRWKIRGRVCRISRLFPF---KGDRNMFYFGLLDS-SGLLK 84
Query: 271 VTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDA 330
F A+++Y ++ ++ P + E+ L S V+ +DD
Sbjct: 85 NKAFGEDAEKYYG---------INPNNIFPLK---------FEVILAKESEVERLEQDD- 125
Query: 331 SIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMS-- 388
+ PR + + V + + + D I V+ Y + +RK E +K L + D S
Sbjct: 126 TFPRLKVVKYDLKKVRDLPHGTFFD-IEVIVYKAGCVVDVRKG--ELRKLELEVFDASMK 182
Query: 389 -GRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLF--- 444
G +V++TLW NDD + + + L+++ +++ + S +F
Sbjct: 183 PGETVKVTLW----NDDIELVSPLDLRKYYYKLSIQDATCNEYLQREYIQTSKASVFKIA 238
Query: 445 -IEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRAD--IRKTV 487
+E D E+ + W K+ K+ D + V D IRK V
Sbjct: 239 KVECDSTESRVVSLWKAKKFKDVGETKRKSDHVPVVTEDEKIRKLV 284
>gi|297736059|emb|CBI24097.3| unnamed protein product [Vitis vinifera]
Length = 115
Score = 52.0 bits (123), Expect = 0.001, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 358 GVVSYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGV 416
GVV +SPT + RK+ + KR + D + ++V ++LW + + G L D
Sbjct: 15 GVVQSVSPTMRIQRKSHNDIVPKRDITFADKTKKTVVVSLWNDHATNVGQELLDNADK-- 72
Query: 417 FPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRL 455
FPI+A+K+ +V DF + T+S + + + PD E ++
Sbjct: 73 FPIVAIKSLKVGDFQVVSLSTLSESIVLVNPDTREYKKV 111
>gi|391325707|ref|XP_003737369.1| PREDICTED: probable replication factor A 73 kDa subunit-like
[Metaseiulus occidentalis]
Length = 228
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 6/184 (3%)
Query: 240 AKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLK 299
K +++ + DG +F F L D + +I V + + + +++ G Y + +
Sbjct: 2 TKSDMKTFKKDNTDGNLFSFTLAD-NTADINVLVTGELGHEMFEKIQTGHCYQICDFKQR 60
Query: 300 PAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGV 359
P+ + ++ E+ L S V+ D +P++ + IN + E ++DL +
Sbjct: 61 PSHPLYKVTNHTCELLLGKISEVRQI--DGGHLPKKVEKYFTINQIRDTEVGKMIDLQAI 118
Query: 360 VSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPI 419
+ + S K G ++ + L D S + V LTLWG+ + R + D F
Sbjct: 119 IYDVGEIHSYSGKAGDIRNRQNILLVDDSRKIVSLTLWGSLIHKVDDREGQVVD---FQK 175
Query: 420 LAVK 423
L+VK
Sbjct: 176 LSVK 179
>gi|27817863|dbj|BAC55631.1| hypothetical protein [Oryza sativa Japonica Group]
gi|42409189|dbj|BAD10455.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 472
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 91/203 (44%), Gaps = 12/203 (5%)
Query: 256 VFHFD--LLDSDGGEIRVTCFNAVADQFYHQVEAGKIYL-VSRGSLKPAQKNFNHLHNDL 312
+F+ D +LD +G ++ T + ++F + G +Y+ V ++ K + + H
Sbjct: 9 IFNIDGVILDEEGTMVQFTIPKKLENEFRPSLTLGCVYMFVDVNTVDIKNKKYIYHHQKY 68
Query: 313 EIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRK 372
+ ++ V +SIP F F P + + S LIGV+S++ P +
Sbjct: 69 MLQFKSSTKVHHLESRGSSIPNYGFEFCPFDQIPSKSGISK-PLIGVISHVGPYDYAGKT 127
Query: 373 NGTETQKRTLHLRDMSGRSVELTLWGNF--CNDDGLRLQHMCDSGVFPILAVKAGRVS-D 429
+ + R L +R + E+ LWG + D+ LQ D + ++A+ AG +
Sbjct: 128 SS--KKNRKLKIRSKDEQEQEIVLWGEYGGSFDEAFVLQKSTDHKI--VVAILAGLTAGT 183
Query: 430 FNGKVVGTIST-TQLFIEPDFPE 451
+ GK T S+ TQ++ + D E
Sbjct: 184 YLGKTEATSSSATQIYFDSDITE 206
>gi|397645104|gb|EJK76691.1| hypothetical protein THAOC_01533, partial [Thalassiosira oceanica]
Length = 169
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
+P +Q++ K + +K + R++++LSDG+ GM ATQ N LV +G+L +V
Sbjct: 65 VPTVQLLSCKRIANKSGGGDE----RYKVILSDGTHFCSGMCATQLNHLVHAGVLAQDAV 120
Query: 61 VRLTKFTCNVI-QNRMIVIVM 80
+R+T+F NV+ + I IV+
Sbjct: 121 IRVTEFIVNVMGSGQRICIVL 141
>gi|414868223|tpg|DAA46780.1| TPA: hypothetical protein ZEAMMB73_640778 [Zea mays]
Length = 463
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 25/186 (13%)
Query: 231 KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA----DQFYHQVE 286
K++I ARV K + R HF L D +G +I + D F H+
Sbjct: 236 KYSIVARVEVKFPIEPRFRDRQ-----HFVLSDINGAKIEAITYMYETVKHFDNFLHEKH 290
Query: 287 AGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRP----- 341
K++ V + SL P + NF HL+ +E+ LD ++V+ ++P Q F
Sbjct: 291 VYKMHNV-KFSLHPGEFNFRHLNGPMELCLDQQTIVE-----PYTVPIQMAPFPKQIILN 344
Query: 342 INDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFC 401
+ D+ + N ++VD++ +V ++ M R + + D G + WG+
Sbjct: 345 LADIAELPNRTLVDIMAIVVHLDTIHRTM-----WGPFRKIVIMDARGYLHIIKAWGDLL 399
Query: 402 NDDGLR 407
N + LR
Sbjct: 400 NKNALR 405
>gi|62733874|gb|AAX95983.1| hypothetical protein LOC_Os11g13920 [Oryza sativa Japonica Group]
gi|77549546|gb|ABA92343.1| AT hook motif-containing protein, putative [Oryza sativa Japonica
Group]
Length = 2157
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 101/242 (41%), Gaps = 35/242 (14%)
Query: 234 IKARVTAK-GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYL 292
+ R+ A+ L + + G G +FH DL+ + DQ + + A +IY
Sbjct: 1592 LNTRILARVSRLWDFCDLNGSGNIFHTDLV--------------LLDQMGNSIHA-QIYP 1636
Query: 293 VSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNS 352
+ SL+P K + D T+ + E A P F P +D+ + + +
Sbjct: 1637 PAIDSLRPLLKEQKVYYIDSFTVSKWTTFEEYI-EPAADFPGITFSLTPFSDIPNLVDKT 1695
Query: 353 VV---------DLIGVVSYI-SPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCN 402
+ D++GV++ + SPT + ++ KRT+ + D S ++ +TLWG
Sbjct: 1696 IFYVGLYGMQPDVMGVITEVGSPTVVRPKSRNADSLKRTIQICDASNSTMPVTLWGE--R 1753
Query: 403 DDGLRLQHMCDSGVF--PILAVKAGRVSDFNG---KVVGTISTTQLFIEPDFPEAHRLKE 457
D + ++G ++ V D+ G V G+ S + ++ D PE LKE
Sbjct: 1754 ADAFDANSVYNAGQTQAQVIVFVGTLVKDYTGLGLTVTGS-SPCKWYLNLDIPEVLELKE 1812
Query: 458 WF 459
F
Sbjct: 1813 SF 1814
>gi|115473669|ref|NP_001060433.1| Os07g0642100 [Oryza sativa Japonica Group]
gi|113611969|dbj|BAF22347.1| Os07g0642100, partial [Oryza sativa Japonica Group]
Length = 145
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 310 NDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGM--ENNSVVDLIGVVSYISPTA 367
N L I + ++ C + P F P DV + +N VD++GV++ I T
Sbjct: 7 NPLMISFTKWTTLEECIDASDDFPAITFSLTPFQDVPSLVDKNAFYVDIMGVITEIGATD 66
Query: 368 SLMRKN-GTETQKRTLHLRDMSGRSVELTLWGN 399
+L K+ TET KRT+ + D S ++ +TLWGN
Sbjct: 67 TLRPKSRNTETLKRTMQIWDASNSTLPITLWGN 99
>gi|77552759|gb|ABA95556.1| hypothetical protein LOC_Os11g47400 [Oryza sativa Japonica Group]
Length = 296
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 74/158 (46%), Gaps = 10/158 (6%)
Query: 532 CNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAK 591
CNK V+ D ++HC C++ RY L+ QI DHT T T F + A+ ++
Sbjct: 36 CNKIVIQKND-KYHCRNCNKYPENTTPRYRLRLQISDHTTSTSCTIFDDVAQSMLETPVS 94
Query: 592 DLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSD---EQRVKSTVVKAERYNYS 648
L +L +D +++ +++ + +FK K+ E+ ++ VK T V +Y
Sbjct: 95 SLLNL--LDGKNDEIPNIIQQLCGKQLIFKFKLSEQNLTEGTPNYVVKKTFVP----DYM 148
Query: 649 SETRFILDLMDKLKSGDSTSFALKAENIIPKPEMTYTG 686
E +++++ ++ D LK + + E T +G
Sbjct: 149 LEKQYLINKAEEELMDDDVDNILKQDRETNQQEQTSSG 186
>gi|108864598|gb|ABA94881.2| AT hook motif-containing protein, putative [Oryza sativa Japonica
Group]
Length = 2157
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 101/242 (41%), Gaps = 35/242 (14%)
Query: 234 IKARVTAK-GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYL 292
+ R+ A+ L + + G G +FH DL+ + DQ + + A +IY
Sbjct: 1592 LNTRILARVSRLWDFCDLNGSGNIFHTDLV--------------LLDQMGNSIHA-QIYP 1636
Query: 293 VSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNS 352
+ SL+P K + D T+ + E A P F P +D+ + + +
Sbjct: 1637 PAIDSLRPLLKEQKVYYIDSFTVSKWTTFEEYI-EPAADFPGITFSLTPFSDIPNLVDKT 1695
Query: 353 VV---------DLIGVVSYI-SPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCN 402
+ D++GV++ + SPT + ++ KRT+ + D S ++ +TLWG
Sbjct: 1696 IFYVGLYGMQPDVMGVITEVGSPTVVRPKSRNADSLKRTIQICDASNSTMPVTLWGE--R 1753
Query: 403 DDGLRLQHMCDSGVF--PILAVKAGRVSDFNG---KVVGTISTTQLFIEPDFPEAHRLKE 457
D + ++G ++ V D+ G V G+ S + ++ D PE LKE
Sbjct: 1754 ADAFDANSVYNAGQTQAQVIVFVGTLVKDYTGLGLTVTGS-SPCKWYLNLDIPEVLELKE 1812
Query: 458 WF 459
F
Sbjct: 1813 SF 1814
>gi|414589167|tpg|DAA39738.1| TPA: hypothetical protein ZEAMMB73_875706 [Zea mays]
Length = 487
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 405 GLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGK 464
G L M DS PI+A+K+ +VSDF G + TI + L I PD EA L W+ EGK
Sbjct: 220 GQELLDMVDSS--PIVAIKSLKVSDFQGVSLPTIGRSTLEINPDLLEAKNLMSWYVSEGK 277
Query: 465 NTQSVSISRDS 475
+ IS ++
Sbjct: 278 DISLAPISAEA 288
>gi|312082357|ref|XP_003143411.1| hypothetical protein LOAG_07830 [Loa loa]
Length = 163
Score = 51.2 bits (121), Expect = 0.002, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 520 YTACPIMIGDRPCNKKVMNNGDGRWH-CDRCDQSVVECDYRYILQFQIQDHTGLTWVTAF 578
+ CP C KK++ D + C +C E Y Y L ++ D TG VTAF
Sbjct: 14 FQGCPT------CKKKLLVEKDNDLYICSKCG-ICNEYKYYYTLHMELFDFTGTVHVTAF 66
Query: 579 QECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKS 637
+CA++++G A ++ K++ + E++ ++ F Y+F+L ++ +D + +
Sbjct: 67 DDCAQKLIGEQADEV--AKFLKFDSERYQSSFKSVLFKPYMFRLGAQKSGNADYSTIST 123
>gi|356995354|emb|CCD35049.1| replication protein A1, partial [Apatura iris xanthina]
Length = 76
Score = 51.2 bits (121), Expect = 0.002, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 486 TVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWH 545
T S+ + LG+ +K D+ ++ + + DN Y ACP CNKK+++ +G++
Sbjct: 4 TFSEADERKLGSGDKGDFFSLLGVLTFTFADNVVYKACP----QEQCNKKLVDQENGQFR 59
Query: 546 CDRCDQSVVECDYRYIL 562
C++C++ YR +L
Sbjct: 60 CEKCNREYPNFKYRLLL 76
>gi|414886401|tpg|DAA62415.1| TPA: hypothetical protein ZEAMMB73_531881 [Zea mays]
Length = 409
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 15/181 (8%)
Query: 231 KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA----DQFYHQVE 286
K++I ARV K + R HF L D +G +I + D H+
Sbjct: 169 KYSIVARVEVKFPIEPCFRDRQ-----HFILSDINGAKIEAITYMYETVKHFDNLLHEKH 223
Query: 287 AGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVE 346
K++ V + SL P + NF HL+ +E+ LD ++V+ +P + ++D+
Sbjct: 224 VYKMHNV-KFSLHPGEFNFRHLNGHMELCLDQQTIVEPYTVPIQMVPFPKQILLNLDDIA 282
Query: 347 GMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGL 406
+ N ++VD++ +V ++ M R + + D G + +WG+ N + L
Sbjct: 283 ELPNRTLVDIMAIVVHLDTIHRTM-----WCPFRKIVIMDARGYLHIIKVWGDLLNKNAL 337
Query: 407 R 407
R
Sbjct: 338 R 338
>gi|224138504|ref|XP_002326619.1| predicted protein [Populus trichocarpa]
gi|222833941|gb|EEE72418.1| predicted protein [Populus trichocarpa]
Length = 546
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 107/241 (44%), Gaps = 26/241 (10%)
Query: 313 EIFLDMTSMVQLCYEDDAS--IPRQQFHFRPINDVEGMENNS--VVDLIGVVSYISPTAS 368
E+ +D+ S ++ + + +PR F+F + E S ++D++G + I P
Sbjct: 90 EVVIDLKSDTKIARLNPLTPQVPRHYFNFIDFAHLLTKEKGSRTLIDVLGRLKAIQPLEQ 149
Query: 369 LMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCN--DDGLRLQHMCDSGVFPILAVKAG- 425
++ + T K+ + ++ G + +TLWG+ DD + +H PI+ V AG
Sbjct: 150 VLVRGQDITDKKEFIIENIMGDELRITLWGDVAKSFDDFVLHEHTN-----PIIVVFAGF 204
Query: 426 RVSDFNGK--VVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADI 483
RV++F GK + T+++ F P+ PE K + + + S +++ I
Sbjct: 205 RVTEFKGKPNLASTVASFWYF-NPEIPEILPYKHHYNQLPVEVYQLPASMNAVRSIEQQI 263
Query: 484 ---RKTVSQIKDEGLGTKEKPDWITVSATIV-YIKCDNFCYTACPIMIGDRPCNKKVMNN 539
RKT+ +I + K + T A+I Y + Y +CP+ C K + +
Sbjct: 264 NENRKTIKEILCMD-PYEHKSERCTYKASIADYDLHRGWWYQSCPL------CTKSLSDK 316
Query: 540 G 540
G
Sbjct: 317 G 317
>gi|38346906|emb|CAE03875.2| OSJNBb0015N08.3 [Oryza sativa Japonica Group]
Length = 696
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 77/383 (20%), Positives = 151/383 (39%), Gaps = 68/383 (17%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDL--LDSDGGEIRVTCFNA 276
IIPIA L P + I R++ E R N D + H DL LD G I
Sbjct: 244 IIPIAELRPGRYDYMICVRISRIWEFRGTNE---DDNIKHLDLVLLDQKGDAIYAEIPPD 300
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
++ G I +S+ ++ A+ ++
Sbjct: 301 AIPLLNQYLQEGNIVYISKITVNNAKPSYR------------------------------ 330
Query: 337 FHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTL 396
VD+IG + +S A + + +R + L+D+SG++++L+L
Sbjct: 331 ----------------AVDVIGKIIAVSNAAMISTSSSDYRMRRIVKLQDLSGKTIDLSL 374
Query: 397 WGNFCND-DGLRLQHM-CDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFI-EPDFPEAH 453
G + DG + + ++ + I + ++ + + + + +I E D PE
Sbjct: 375 SGKRAVEFDGETILEVGQNNHIIAIFVGTSMKILKGTYEFLSGTTACRWYINENDIPEIK 434
Query: 454 RLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIK--DEGLGTKEKPDWITVSATIV 511
++ Q + + D + R+ KT++++K D + EK +ATI+
Sbjct: 435 MFQKCLPPHADPIQKLYLQSDE-DMQRSIEHKTLAELKEIDPFVDKDEK---YQCTATII 490
Query: 512 YIK-CDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHT 570
I+ +CY AC + CN K++ +G C + + + +Y+Y + F D T
Sbjct: 491 GIQERKTWCYQACKL------CNCKMIWDG-SILKCKKENCPCRQYEYKYKIPFIANDGT 543
Query: 571 GLTWVTAFQECAEEIMGMSAKDL 593
+ F++ E++G +A+ +
Sbjct: 544 ASLELVLFEKKGTELIGRTAETM 566
>gi|294875670|ref|XP_002767428.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239868995|gb|EER00146.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 162
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 12/114 (10%)
Query: 520 YTACPIMIGD-----RPCNKKVMNN-GDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLT 573
YT+C I D R C+KKV + G W C Q+ +C RYI+ ++ D +G
Sbjct: 48 YTSCITEIPDGRGGIRKCSKKVEQDISTGTWSCIEGHQNP-QCMPRYIISIKLADISGEV 106
Query: 574 WVTAFQECAEEIMGMSAKDLYSLKYVDQ-----NDEKFGEVVRNATFTKYLFKL 622
V AF E A+ ++G+SA+++ + D+ N+ +F + N T+YL K+
Sbjct: 107 MVRAFDEQAQALLGVSAQNMMNGMGEDEIETLINNTQFKKXXDNNFLTRYLGKI 160
>gi|20198198|gb|AAM15454.1| putative replication protein A1 [Arabidopsis thaliana]
Length = 521
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/289 (19%), Positives = 118/289 (40%), Gaps = 33/289 (11%)
Query: 339 FRPINDVEGM-----ENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVE 393
F + D EG+ + N ++D++G V + ++ +N +K +RD+S +
Sbjct: 65 FLDLADFEGIKTESYDENVLIDILGQVVSVGKVDEIVAQNKP-NKKLEFQIRDVSNELLS 123
Query: 394 LTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGT--ISTTQLFIEP-DFP 450
TLWG F L+ + +L ++ ++++F ++ T + + I P P
Sbjct: 124 CTLWGVFAEKVFSALKSVKHDQKTVVL-IRYAKINNFKSEISITSAFDVSDVIIHPVHVP 182
Query: 451 EAHRLKEWFEKEGK--NTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSA 508
E + +G Q ++RD + D ++ + L ++ W +
Sbjct: 183 EVDLFVKSLPSDGLALTIQDSYVNRDIIKTKSVDFFDYPAKTIVDLLNGRDVGQW-RILG 241
Query: 509 TIVYIKCD-NFCYTACPIMIGDRPCNKKVMNNGDG-------------RWHCDRCDQSVV 554
+I I D + Y CP CN+K+ + ++ CD+ +S+
Sbjct: 242 SIFAIDTDWGWFYFGCP------KCNRKIELVKESTSTVKRIQAPTKPKFWCDKYQESIT 295
Query: 555 ECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQND 603
+ RY L ++ D TG + F+ A ++ S+++L +Y + D
Sbjct: 296 NVEARYKLHIRVMDQTGEIKLMVFENNATNLIRKSSEELLDGQYEEIED 344
>gi|336475982|ref|YP_004615123.1| OB-fold tRNA/helicase-type nucleic acid binding protein
[Methanosalsum zhilinae DSM 4017]
gi|335929363|gb|AEH59904.1| nucleic acid binding OB-fold tRNA/helicase-type [Methanosalsum
zhilinae DSM 4017]
Length = 377
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 90/183 (49%), Gaps = 16/183 (8%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGD-GKVFHFDLLDSDGGEIRVTCFNAVAD 279
I+ + MG + +V K ++R +N + G G+V + + DS G+IR+T ++ AD
Sbjct: 171 SISDIKDGMGDINLYGKVLDKWDIREFNRRDGSKGRVCNILIGDS-SGKIRLTLWDEKAD 229
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
F +++AG + G + + NFN ++EI + +++ + D ++ ++ F
Sbjct: 230 -FAEKIKAGDTVEIINGYAR--ENNFNQ---EVEIQIGSYGLIK---KSDRNVEFRE-SF 279
Query: 340 RPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGN 399
PI D+ + + G VS I R++GT+ +++ D +GR + L LWG
Sbjct: 280 TPIADIVA---GDLFSIKGHVSGIDEIKEFSRQDGTQDMVANIYVSDETGR-IRLALWGE 335
Query: 400 FCN 402
N
Sbjct: 336 HAN 338
>gi|392578148|gb|EIW71276.1| hypothetical protein TREMEDRAFT_73248 [Tremella mesenterica DSM
1558]
Length = 1002
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 15/104 (14%)
Query: 732 LPAAGTSAARQS--CSSCGAVGHSSMNCPSIMSGPGQSSGGGY--ANSFSSGAGIATSSE 787
P+ G+ + Q+ C CG GH S CP+ PG+++G A+S +G E
Sbjct: 868 FPSNGSGSGGQTGECFKCGQSGHWSSACPNDDGPPGRNAGPARSGASSNRNGNSGGGGGE 927
Query: 788 CYKCHKTGHWARDCP-----SLNAAPP------AYGSSGIGISA 820
C+KC ++GHWA CP S+ + PP A G SG SA
Sbjct: 928 CFKCGQSGHWASACPNEEGGSITSFPPKRQKTAARGGSGTKSSA 971
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 10/66 (15%)
Query: 744 CSSCGAVGHSSMNCP-----SIMSGPGQSSGGGYANSFSSGAGIATSS-ECYKCHKTGHW 797
C CG GH + CP SI S P + + G+G +S+ EC+ C K GHW
Sbjct: 928 CFKCGQSGHWASACPNEEGGSITSFPPKRQ----KTAARGGSGTKSSAGECFNCGKKGHW 983
Query: 798 ARDCPS 803
A DCP+
Sbjct: 984 ASDCPN 989
>gi|15789450|ref|NP_279274.1| replication factor A [Halobacterium sp. NRC-1]
gi|169235165|ref|YP_001688365.1| replication factor A [Halobacterium salinarum R1]
gi|10579780|gb|AAG18754.1| replication A related protein [Halobacterium sp. NRC-1]
gi|167726231|emb|CAP13011.1| replication protein A [Halobacterium salinarum R1]
Length = 474
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 83/182 (45%), Gaps = 19/182 (10%)
Query: 223 AALNPYMGKWTIKARVTAKGELRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQF 281
A L+ + T+ V +R ++ G +G+V + ++ + G +RVT ++ AD
Sbjct: 170 ADLSLGVSDVTLVGEVLDTEAVRTFDRDDGSEGRVSNL-VVGDETGRVRVTLWDDQADTA 228
Query: 282 YHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRP 341
++AG + + G ++ + + LE+ + T V +P F P
Sbjct: 229 TD-LDAGAVVEIVDGYVREREGS-------LELHVGDTGAV-------TPVPDADVSFVP 273
Query: 342 -INDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNF 400
++ +E + D+ GVV + PT + R +G+E Q R + L+D +G + + LWG
Sbjct: 274 DTTSIDSLEQDDTADIAGVVRSVDPTRTFDRDDGSEGQVRNVRLQDDTG-DIRVALWGEK 332
Query: 401 CN 402
+
Sbjct: 333 AD 334
>gi|297852032|ref|XP_002893897.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297339739|gb|EFH70156.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 492
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 83/425 (19%), Positives = 166/425 (39%), Gaps = 50/425 (11%)
Query: 225 LNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQ 284
LNP +W ++ +V R N+ G+ F L D +G I T + +F
Sbjct: 13 LNPSKYEWVVETKVLCSWTRRLENS----GRRLVFVLADREGSRIHATVEDKNIKKFDSV 68
Query: 285 VEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPIND 344
++ G + ++ L ++ +I T+ V+ C + +P + +F D
Sbjct: 69 LKEGDVVTLNPFKLIKYSGDYKSNSLSFKILFYRTTQVKPCDDFPKEVPEK--YFVEFGD 126
Query: 345 V-EGMENNSV-VDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCN 402
V G + V VD+IG + + P + + G T K + LRD + TL +F
Sbjct: 127 VLNGSRDTRVFVDVIGQIVNVGPIEDI-KIRGKSTPKLDVELRDRGNVRLICTLLADFAK 185
Query: 403 DDGLRLQHMCDSGVFPILAVKAGRVSDFNGK--VVGTISTTQLFIEPDFPEAHRLKEWFE 460
+++ + + ++ +V ++ G + + T++ ++P +
Sbjct: 186 Q--VKVYTEANPAAV-VCVIRCAQVKEWKGNWTISNAMGATRVLLDPPGVFVDEFRSGLP 242
Query: 461 KEG------KNTQ-----SVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSAT 509
+G N++ +VSI L + + + +EG+ +T+
Sbjct: 243 TDGVVLTNHDNSELFAGSTVSIRDQFLVKNHKRTVRDIVEALEEGMC-------VTMVTV 295
Query: 510 IVYIKCDNFCYTACPIMIGDRPCNKKVM----NNGDG----RWHCDRCDQSVVECDYRYI 561
+ + Y +C + CNK V N+GD ++C CD+ V +RY
Sbjct: 296 GSVERTSKWYYVSCKM------CNKSVEPYPENSGDDGNPPLYYCGICDKDVSAVVFRYR 349
Query: 562 LQFQIQDHTGL-TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATF-TKYL 619
L ++ D T F ++ +A++LY+ V +ND + A ++L
Sbjct: 350 LVLEVSDATNYKARFLLFDAMGSTLLRRTAQELYNA--VSENDPSILPLEIGALVGRRFL 407
Query: 620 FKLKV 624
FK+ +
Sbjct: 408 FKVSI 412
>gi|57834063|emb|CAD40309.2| OSJNBb0013O03.4 [Oryza sativa Japonica Group]
Length = 2052
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 6/145 (4%)
Query: 253 DGKVFH--FDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHN 310
+ K+ H L+D G I F + + F + GKIY ++ +KP K + + N
Sbjct: 1455 ETKLLHKALVLVDETGNSISAQIFPDINEIFEPLLTEGKIYYLAYYRVKPRNKIYRPVAN 1514
Query: 311 DLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGM--ENNSVVDLIGVVSYISPTAS 368
I L + V+ E +S P + + N+ + + +S +D IGV++ I+ S
Sbjct: 1515 KFAISLTKWTKVEEYLEPPSSFPSYVYTLKSFNEFPSLVDKKDSFIDTIGVITEITSITS 1574
Query: 369 LMR-KNGTETQKRTLHLRDMSGRSV 392
+ ++ KR +H+RD + RS+
Sbjct: 1575 VRSCTRNADSLKRNVHMRD-AKRSI 1598
>gi|321455751|gb|EFX66876.1| hypothetical protein DAPPUDRAFT_331651 [Daphnia pulex]
Length = 245
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 39/172 (22%)
Query: 292 LVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENN 351
+ ++KPA ++ + N EI + + ++P +EN+
Sbjct: 102 VTEEATVKPANNKYSSMRNGYEI----------TFNQNTALP-------------NLEND 138
Query: 352 SVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHM 411
S+VD+IG+V Y S + +KN R L + + + E+TL L +
Sbjct: 139 SIVDVIGLVLYSSEFVFIDKKNKVS---RFLEAKLVGSTNTEVTLS---------LLGKL 186
Query: 412 CDSGVFPILAVKAGRVSD-FNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKE 462
D I+A K ++S+ F G + T+S+T + + P EAH+L+EW+ E
Sbjct: 187 VDQ---RIVAYKGVKISNNFGGCYLETLSSTVVQVNPAMNEAHQLREWYNNE 235
Score = 40.8 bits (94), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 8/62 (12%)
Query: 3 VLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRS-QQGMLATQRNELVTSGLLQIGSVV 61
+LQV+D K V + +Q R+R+++SDG S + GMLAT N L+ G L+ +++
Sbjct: 32 ILQVLDYKAV-------KGDKQDRYRLLISDGKYSYEYGMLATHLNHLIVDGQLKNFTII 84
Query: 62 RL 63
++
Sbjct: 85 KV 86
>gi|308080968|ref|NP_001183010.1| uncharacterized protein LOC100501330 [Zea mays]
gi|238008768|gb|ACR35419.1| unknown [Zea mays]
Length = 439
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 118/275 (42%), Gaps = 30/275 (10%)
Query: 332 IPRQQFHFRPINDVEGMENNS--VVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSG 389
P+ F P++ ++ +N + +D+I +S +S A + +G + +R + L D+ G
Sbjct: 20 FPKYTFSLTPLDKLDQYKNKTDRFIDVIAKISGVSNVAKVPTTSGDQQMRRVVLLEDLKG 79
Query: 390 RSVELTLWG----NFCNDDGLRL---QHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQ 442
+EL+L G F D L + H+ V ++ + G + +G S +
Sbjct: 80 NMIELSLSGKRALEFDGDQVLDVGQQHHVIAIFVGTLVKLYKGEYTFLSG-----TSACR 134
Query: 443 LFI-EPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIK--DEGLGTKE 499
+I E D E ++ E + + D + + K++ Q+K D L +
Sbjct: 135 WYINENDIAEIKAFQKSLPSEPVPIKKTYLQNDDATHKFEE--KSLEQLKHVDPFLDMGQ 192
Query: 500 KPDWITVSATIVYI-KCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDY 558
+ +ATI+ I + +CY AC I CN ++ +G + C + + ++
Sbjct: 193 R---YQCTATIIGITENQTWCYKACKI------CNSAIIQKENG-YKCTKEGCPSTQFEW 242
Query: 559 RYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDL 593
+Y + F DHT F++ E++G SA L
Sbjct: 243 KYKIPFIASDHTYNLEFMFFEKKGMELIGKSASTL 277
>gi|118388117|ref|XP_001027159.1| hypothetical protein TTHERM_00726370 [Tetrahymena thermophila]
gi|89308929|gb|EAS06917.1| hypothetical protein TTHERM_00726370 [Tetrahymena thermophila
SB210]
Length = 580
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 101/481 (20%), Positives = 183/481 (38%), Gaps = 93/481 (19%)
Query: 232 WTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAV-ADQFYHQVEAGKI 290
+ + A+V +KG ++ Y Q K F ++ D + FN + +Y Q+E GK+
Sbjct: 94 FIVTAKVISKGSIK-YTYQ---DKSFKIEIYDGSLEHSTLVYFNCQDIENYYEQIELGKV 149
Query: 291 YLVSRGSL------KPAQKNFNH-LHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPIN 343
Y SR + K A+K + + N I L + L Y D S ++ IN
Sbjct: 150 YKFSRAIIAKDAQKKEARKCLKYEMFNSQYIQLVEDESINLIYAADFS----KYELIKIN 205
Query: 344 DVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLH-LRDMSGRSVELTLWGNFCN 402
+ D++GVV P+ ++ +++ R L ++ + G TL + N
Sbjct: 206 QISEQHQTDHFDILGVVME-EPSKERVK----DSEGRELDTIKFLIGDETRHTLQVSIRN 260
Query: 403 DDGLRLQHMCDSGVFPILAVKAGRVSDF-NGKVVGTISTTQLFIEPDFPEAHRLKEWFE- 460
+ GL L + +F ++ +K+ V+ + N K V S + + + PD +A L FE
Sbjct: 261 EYGLNL----NLKIFDVVLIKSTHVNVYANQKSVD--SGSGILVNPDIQQALDLLYSFEK 314
Query: 461 ----------------------------------------KEGKNTQSVSISRDSLSVGR 480
K KN + I + +S+
Sbjct: 315 IIQEDEEDIDYKKDNQLDNSFLTDGKEECKSNELNKQRALKSNKNKEFTQIGENKVSLHF 374
Query: 481 ADIRK---TVSQIKDE--------GLGTKEKPDWITVSATIVYIKCDNFCYTA----CPI 525
D++ V Q++D+ + + P +I +Y + + Y+A P
Sbjct: 375 YDVKSINYVVQQVEDQLERVIRLSLTHSTQDPAFIKEFTKCIYSEIEGEIYSAGIEKKPF 434
Query: 526 MIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEI 585
+ C KK+ N + +C + + + I D TG AF E EEI
Sbjct: 435 YVACSVCKKKIENYPVIQKCFKKCAGATIIA--KMATNLNIADATGALSALAFNEQCEEI 492
Query: 586 MGMSA---KDLYSLK---YVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTV 639
G A K LY K Y + D + + +R + K+ F++ + + + + K +
Sbjct: 493 FGFDAEFMKILYEYKNSQYYHKKDPTYRDFIRQSFTQKFRFRILSGVQVYEKKYQAKHNI 552
Query: 640 V 640
V
Sbjct: 553 V 553
>gi|357445807|ref|XP_003593181.1| hypothetical protein MTR_2g008650 [Medicago truncatula]
gi|355482229|gb|AES63432.1| hypothetical protein MTR_2g008650 [Medicago truncatula]
Length = 486
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 118/284 (41%), Gaps = 34/284 (11%)
Query: 356 LIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSG 415
+IGV++ + L R NG T+ + L + G ++ TL+G++ +D L SG
Sbjct: 74 IIGVLTGVGSERELER-NGNMTKLNVIEL-EAGGFKIQCTLFGSYVDD----LNSFIASG 127
Query: 416 VFP--ILAVKAGRVSDFNGK--VVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSI 471
P I+ ++ + F K V I T++ +P A ++ + + +
Sbjct: 128 DIPNAIVIIQLAKAKSFQDKIHVQNCIGCTKVIFKPTCDAAVSMRNRLSETVDTPSPLGL 187
Query: 472 S----------RDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYT 521
+ R+ G R T+ +KD T E ++ + + +NF YT
Sbjct: 188 TQLQPEAKLDPREEFLYGTP--RNTMQGLKDAT--TNEV--YVVLGTIKRIVNRENFWYT 241
Query: 522 ACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQEC 581
AC C+K V+ + ++C++CD+ V + RY L+ + DHT + F +
Sbjct: 242 ACI-------CSKAVIPDSQ-MFYCEKCDRHVKKVFSRYCLRVRAIDHTDCATLVIFDKE 293
Query: 582 AEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVK 625
A + S D+ + V ++ + +LFK++ K
Sbjct: 294 ATALFNKSCVDMLAEHGVAVSEGHLPPEIAGIIGKTFLFKVETK 337
>gi|335440024|ref|ZP_08561748.1| replication factor A [Halorhabdus tiamatea SARL4B]
gi|334889192|gb|EGM27482.1| replication factor A [Halorhabdus tiamatea SARL4B]
Length = 492
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 17/162 (10%)
Query: 244 LRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+R ++ G +G+V + + D G +RVT ++ AD+ +++AG V G ++
Sbjct: 187 VRTFDRDDGSEGRVANLSIGDE-TGRVRVTLWDERADRV-EEIDAGATVEVVDGYVR--- 241
Query: 303 KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSY 362
DLE+ + + + D + + PI+DVE + VD+ GVV
Sbjct: 242 ----EREGDLEVHVGEEGAIDELEDGDVAYAPETT---PIDDVE---LDETVDIGGVVRS 291
Query: 363 ISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDD 404
PT + R +G+E Q + + ++D +G + + LWG + D
Sbjct: 292 TDPTRTFDRDDGSEGQVKNIRIQDDTG-DIRVALWGEKADRD 332
>gi|297795577|ref|XP_002865673.1| hypothetical protein ARALYDRAFT_917801 [Arabidopsis lyrata subsp.
lyrata]
gi|297311508|gb|EFH41932.1| hypothetical protein ARALYDRAFT_917801 [Arabidopsis lyrata subsp.
lyrata]
Length = 496
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 87/433 (20%), Positives = 169/433 (39%), Gaps = 60/433 (13%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNN-QRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
I +NP + IK + LR + QR G L+D G I T + +
Sbjct: 14 IDDINPIHDQNKIKVLI-----LRLWKAYQRDAGNTIEMVLVDEKGSRIHATVEDKNIKK 68
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
F ++ G + ++ L ++ +I T+ V+ C + +P + +F
Sbjct: 69 FDSVLKEGDVVTLNPFKLIKYSGDYKSNSLSFKILFYRTTQVKPCDDFPKEVPEK--YFV 126
Query: 341 PINDV-EGMENNSV-VDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
DV G + V VD+IG + + P + + G T K + LRD + TLW
Sbjct: 127 EFGDVLNGSRDTRVFVDVIGQIVNVGPIEDI-KIRGKSTPKLDIELRDRGNVRLICTLWA 185
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGK--VVGTISTTQLFIEPDFPEAHRLK 456
+F +++ + + ++ +V ++ G + + T++ ++P +
Sbjct: 186 DFAKQ--VKVYTEANPAAV-VCVIRCAQVKEWKGNWTISNAMGATRVLLDPPGVFVDEFR 242
Query: 457 EWFEKEG------KNTQ-----SVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWIT 505
+G N++ +VSI L + + + +EG+ +T
Sbjct: 243 SGLPTDGVVLTNHDNSELFAGSTVSIRDQFLVKNHKRTVRDIVEALEEGMCVT----MVT 298
Query: 506 VSATIVYIKCDNFCYTACPIMIGDRPCNKKVM----NNGDG----RWHCDRCDQSVVECD 557
V + + + Y +C + CNK V N+GD ++C CD+ V
Sbjct: 299 VGSVE---RTSKWYYVSCKM------CNKSVEPYPENSGDDGKPPLYYCGVCDKDVSAVV 349
Query: 558 YRYILQFQIQDHTGL-TWVTAFQECAEEIMGMSAKDLYSLKYVDQND-----EKFGEVVR 611
+RY L ++ D T F ++ +A++LY+ V +ND + G +V
Sbjct: 350 FRYRLVLEVSDATNYKARFLLFDAMGSTLLRRTAQELYNA--VSENDPSILPSEIGALVG 407
Query: 612 NATFTKYLFKLKV 624
++LFK+ +
Sbjct: 408 R----RFLFKVSI 416
>gi|297722973|ref|NP_001173850.1| Os04g0300175 [Oryza sativa Japonica Group]
gi|255675301|dbj|BAH92578.1| Os04g0300175 [Oryza sativa Japonica Group]
Length = 1718
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 6/145 (4%)
Query: 253 DGKVFH--FDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHN 310
+ K+ H L+D G I F + + F + GKIY ++ +KP K + + N
Sbjct: 1434 ETKLLHKALVLVDETGNSISAQIFPDINEIFEPLLTEGKIYYLAYYRVKPRNKIYRPVAN 1493
Query: 311 DLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGM--ENNSVVDLIGVVSYISPTAS 368
I L + V+ E +S P + + N+ + + +S +D IGV++ I+ S
Sbjct: 1494 KFAISLTKWTKVEEYLEPPSSFPSYVYTLKSFNEFPSLVDKKDSFIDTIGVITEITSITS 1553
Query: 369 LMR-KNGTETQKRTLHLRDMSGRSV 392
+ ++ KR +H+RD + RS+
Sbjct: 1554 VRSCTRNADSLKRNVHMRD-AKRSI 1577
>gi|448730441|ref|ZP_21712749.1| replication factor A [Halococcus saccharolyticus DSM 5350]
gi|445793609|gb|EMA44181.1| replication factor A [Halococcus saccharolyticus DSM 5350]
Length = 493
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 104/242 (42%), Gaps = 37/242 (15%)
Query: 185 YASNYARTPQAPYMQS-PSMYANRGLVGKSEVPSRIIP----------IAALNPYMGKWT 233
YA A P+ + ++ G + E + +I +A + P M +
Sbjct: 8 YADLDADVPEGEFREAVEEKVEEMGGLADEETAAMLIAHEVADGEVEGVADVEPGMEEAK 67
Query: 234 IKARVTAKGELRHY--NNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIY 291
A+VT+ GELR + + + DG+V + ++ D + G+IRV ++ A+ ++E G +
Sbjct: 68 FVAKVTSVGELRTFERDGEDEDGQVINVEVAD-ETGQIRVAFWDERAESAAEELETGSVL 126
Query: 292 LVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGME-N 350
++ +P + +N +EI D + + + + G+
Sbjct: 127 KIAG---RPREG-----YNGIEISADRVEPADVEVD---------VDLDAADTIAGLSLG 169
Query: 351 NSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQH 410
S VDL+G+V + R +G+E + L L D +GR+ +TLW +D R++
Sbjct: 170 QSDVDLVGLVLDTDTVRTFDRDDGSEGRVANLTLGDETGRT-RVTLW----DDQAGRVEE 224
Query: 411 MC 412
+
Sbjct: 225 LT 226
>gi|297849862|ref|XP_002892812.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297338654|gb|EFH69071.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 586
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/305 (19%), Positives = 127/305 (41%), Gaps = 29/305 (9%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
S + + ++P ++ IK ++ Q+ G L+D G + T +
Sbjct: 7 STFVFLDEIDPAAQRYKIKVQIVKLWR----GFQKETGSAIEMVLIDEKGTRMHATVEDK 62
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
+ ++F ++ + LV L + + +I T+ V +C + +P +
Sbjct: 63 LMNKFKSDLKEDQSILVDTFQLVNNGFEYKTSPHSFKISFFRTTSVTICDDFPNDVPEKY 122
Query: 337 F--HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVEL 394
F + + V +++ ++VD+IG + I P +M + G T K + LRD + +
Sbjct: 123 FVDFLKILAGV--LDSKTLVDVIGHIVNIGPLEDIMIR-GRSTTKLDVELRDTNDARLLC 179
Query: 395 TLWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNG--KVVGTISTTQLFIEPDFPE 451
T WG + + +H D + V+ ++ +F G + + ++T++ ++P
Sbjct: 180 TFWGKYADQVSTYAAEHSAD---MIVCVVRFAQIKEFRGNRSISNSYNSTRILLDPQTKV 236
Query: 452 AHRLKEWFEKEGKNTQSVSISRDSLSVGR-ADIRKTVSQIKD-----EGLGTKEKPDWIT 505
AH E ++ + I + R A+ K+ +++KD E L K KP +
Sbjct: 237 AH--------EFRSNAAAVIYLGGYEIKRKAEYLKSATRVKDLRGLSELLENKTKPLVVA 288
Query: 506 VSATI 510
+S +
Sbjct: 289 ISGRV 293
>gi|301071243|gb|ADK55677.1| RPA1-like protein 1 [Tetrahymena thermophila]
Length = 505
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 101/481 (20%), Positives = 183/481 (38%), Gaps = 93/481 (19%)
Query: 232 WTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAV-ADQFYHQVEAGKI 290
+ + A+V +KG ++ Y Q K F ++ D + FN + +Y Q+E GK+
Sbjct: 19 FIVTAKVISKGSIK-YTYQ---DKSFKIEIYDGSLEHSTLVYFNCQDIENYYEQIELGKV 74
Query: 291 YLVSRGSL------KPAQKNFNH-LHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPIN 343
Y SR + K A+K + + N I L + L Y D S ++ IN
Sbjct: 75 YKFSRAIIAKDAQKKEARKCLKYEMFNSQYIQLVEDESINLIYAADFS----KYELIKIN 130
Query: 344 DVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLH-LRDMSGRSVELTLWGNFCN 402
+ D++GVV P+ ++ +++ R L ++ + G TL + N
Sbjct: 131 QISEQHQTDHFDILGVVME-EPSKERVK----DSEGRELDTIKFLIGDETRHTLQVSIRN 185
Query: 403 DDGLRLQHMCDSGVFPILAVKAGRVSDF-NGKVVGTISTTQLFIEPDFPEAHRLKEWFE- 460
+ GL L + +F ++ +K+ V+ + N K V S + + + PD +A L FE
Sbjct: 186 EYGLNL----NLKIFDVVLIKSTHVNVYANQKSVD--SGSGILVNPDIQQALDLLYSFEK 239
Query: 461 ----------------------------------------KEGKNTQSVSISRDSLSVGR 480
K KN + I + +S+
Sbjct: 240 IIQEDEEDIDYKKDNQLDNSFLTDGKEECKSNELNKQRALKSNKNKEFTQIGENKVSLHF 299
Query: 481 ADIRK---TVSQIKDE--------GLGTKEKPDWITVSATIVYIKCDNFCYTA----CPI 525
D++ V Q++D+ + + P +I +Y + + Y+A P
Sbjct: 300 YDVKSINYVVQQVEDQLERVIRLSLTHSTQDPAFIKEFTKCIYSEIEGEIYSAGIEKKPF 359
Query: 526 MIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEI 585
+ C KK+ N + +C + + + I D TG AF E EEI
Sbjct: 360 YVACSVCKKKIENYPVIQKCFKKCAGATIIA--KMATNLNIADATGALSALAFNEQCEEI 417
Query: 586 MGMSA---KDLYSLK---YVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTV 639
G A K LY K Y + D + + +R + K+ F++ + + + + K +
Sbjct: 418 FGFDAEFMKILYEYKNSQYYHKKDPTYRDFIRQSFTQKFRFRILSGVQVYEKKYQAKHNI 477
Query: 640 V 640
V
Sbjct: 478 V 478
>gi|297837861|ref|XP_002886812.1| hypothetical protein ARALYDRAFT_893877 [Arabidopsis lyrata subsp.
lyrata]
gi|297852516|ref|XP_002894139.1| hypothetical protein ARALYDRAFT_337008 [Arabidopsis lyrata subsp.
lyrata]
gi|297332653|gb|EFH63071.1| hypothetical protein ARALYDRAFT_893877 [Arabidopsis lyrata subsp.
lyrata]
gi|297339981|gb|EFH70398.1| hypothetical protein ARALYDRAFT_337008 [Arabidopsis lyrata subsp.
lyrata]
Length = 496
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 87/433 (20%), Positives = 169/433 (39%), Gaps = 60/433 (13%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNN-QRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
I +NP + IK + LR + QR G L+D G I T + +
Sbjct: 14 IDDINPIHDQNKIKVLI-----LRLWKAYQRDAGNTIEMVLVDEKGSRIHATVEDKNIKK 68
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
F ++ G + ++ L ++ +I T+ V+ C + +P + +F
Sbjct: 69 FDSVLKEGDVVTLNPFKLIKYSGDYKSNSLSFKILFYRTTQVKPCDDFPKEVPEK--YFV 126
Query: 341 PINDV-EGMENNSV-VDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
DV G + V VD+IG + + P + + G T K + LRD + TLW
Sbjct: 127 EFGDVLNGSRDTRVFVDVIGQIVNVGPIEDI-KIRGKSTPKLDVELRDRGNVRLICTLWA 185
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGK--VVGTISTTQLFIEPDFPEAHRLK 456
+F +++ + + ++ +V ++ G + + T++ ++P +
Sbjct: 186 DFAKQ--VKVYTEANPAAV-VCVIRCAQVKEWKGNWTISNAMGATRVLLDPPGVFVDEFR 242
Query: 457 EWFEKEG------KNTQ-----SVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWIT 505
+G N++ +VSI L + + + +EG+ +T
Sbjct: 243 SGLPTDGVVLTNHDNSELFAGSTVSIRDQFLVKNHKRTVRDIVEALEEGMCVT----MVT 298
Query: 506 VSATIVYIKCDNFCYTACPIMIGDRPCNKKVM----NNGDG----RWHCDRCDQSVVECD 557
V + + + Y +C + CNK V N+GD ++C CD+ V
Sbjct: 299 VGSVE---RTSKWYYVSCKM------CNKSVEPYPENSGDDGKPPLYYCGVCDKDVSAVV 349
Query: 558 YRYILQFQIQDHTGL-TWVTAFQECAEEIMGMSAKDLYSLKYVDQND-----EKFGEVVR 611
+RY L ++ D T F ++ +A++LY+ V +ND + G +V
Sbjct: 350 FRYRLVLEVSDATNYKARFLLFDAMGSTLLRRTAQELYNA--VSENDPSILPSEIGALVG 407
Query: 612 NATFTKYLFKLKV 624
++LFK+ +
Sbjct: 408 R----RFLFKVSI 416
>gi|297808993|ref|XP_002872380.1| hypothetical protein ARALYDRAFT_911095 [Arabidopsis lyrata subsp.
lyrata]
gi|297318217|gb|EFH48639.1| hypothetical protein ARALYDRAFT_911095 [Arabidopsis lyrata subsp.
lyrata]
Length = 496
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 87/433 (20%), Positives = 169/433 (39%), Gaps = 60/433 (13%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNN-QRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
I +NP + IK + LR + QR G L+D G I T + +
Sbjct: 14 IDDINPIHDQNKIKVLI-----LRLWKAYQRDAGNTIEMVLVDEKGSRIHATVEDKNIKK 68
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
F ++ G + ++ L ++ +I T+ V+ C + +P + +F
Sbjct: 69 FDSVLKEGDVVTLNPFKLIKYSGDYKSNSLSFKILFYRTTQVKPCDDFPKEVPEK--YFV 126
Query: 341 PINDV-EGMENNSV-VDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
DV G + V VD+IG + + P + + G T K + LRD + TLW
Sbjct: 127 EFGDVLNGSRDTRVFVDVIGQIVNVGPIEDI-KIRGKSTPKLDVELRDRGNVRLICTLWA 185
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGK--VVGTISTTQLFIEPDFPEAHRLK 456
+F +++ + + ++ +V ++ G + + T++ ++P +
Sbjct: 186 DFAKQ--VKVYTEANPAAV-VCVIRCAQVKEWKGNWTISNAMGATRVLLDPPGVFVDEFR 242
Query: 457 EWFEKEG------KNTQ-----SVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWIT 505
+G N++ +VSI L + + + +EG+ +T
Sbjct: 243 SGLPTDGVVLTNHDNSELFAGSTVSIRDQFLVKNHKRTVRDIVEALEEGMCVT----MVT 298
Query: 506 VSATIVYIKCDNFCYTACPIMIGDRPCNKKVM----NNGDG----RWHCDRCDQSVVECD 557
V + + + Y +C + CNK V N+GD ++C CD+ V
Sbjct: 299 VGSVE---RTSKWYYVSCKM------CNKSVEPYPENSGDDGNPPLYYCGICDKDVSAVV 349
Query: 558 YRYILQFQIQDHTGL-TWVTAFQECAEEIMGMSAKDLYSLKYVDQND-----EKFGEVVR 611
+RY L ++ D T F ++ +A++LY+ V +ND + G +V
Sbjct: 350 FRYRLVLEVSDATNYKARFLLFDAMGSTLLRRTAQELYNA--VSENDPSILPSEIGALVG 407
Query: 612 NATFTKYLFKLKV 624
++LFK+ +
Sbjct: 408 R----RFLFKVSI 416
>gi|448476279|ref|ZP_21603443.1| replication factor A [Halorubrum aidingense JCM 13560]
gi|445815828|gb|EMA65747.1| replication factor A [Halorubrum aidingense JCM 13560]
Length = 488
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 85/183 (46%), Gaps = 19/183 (10%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHY--NNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
IA + P M +VTA GE+R + + + +G+V + D+ D+ G +RV ++ +A
Sbjct: 56 IADIEPGMSDVKFLGKVTAIGEVRTFERDGEDAEGRVCNVDVADA-SGSVRVALWDEMAT 114
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
Q+E G++ V + ++ ++ L S ++ ++DA + Q
Sbjct: 115 AAEEQLEVGQVLRV----MGRPKEGYSGLE---------VSANKVEPDEDAEVDVQVLDT 161
Query: 340 RPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGN 399
+ D+ S +DL+G V + R +G+E + L + D +GR V +TLW +
Sbjct: 162 YRVEDL--SLGASDIDLVGQVLDTDSVRTFDRDDGSEGRVANLTVGDETGR-VRVTLWDD 218
Query: 400 FCN 402
+
Sbjct: 219 KAD 221
Score = 46.6 bits (109), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 244 LRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+R ++ G +G+V + + D G +RVT ++ AD + AG++ V G ++
Sbjct: 186 VRTFDRDDGSEGRVANLTVGDE-TGRVRVTLWDDKAD-LADEFAAGEVVEVGDGYVR--- 240
Query: 303 KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSY 362
+ DLE+ + V+ ED +P D+ +E VD+ G +
Sbjct: 241 ----ERNGDLELHVGDRGTVERVDEDVEYVP-------ETTDIAELEIGQTVDIGGGIIE 289
Query: 363 ISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAV 422
P + R +G+E Q R + ++D +G + + LWG+ + + + D VF + +
Sbjct: 290 TDPKRTFDRDDGSEGQVRNVRIKDQTGE-IRVALWGDKADTE----LDLADHVVFTDVEI 344
Query: 423 KAGRVSDFN 431
+ G D
Sbjct: 345 QDGWQDDLE 353
>gi|321456582|gb|EFX67685.1| hypothetical protein DAPPUDRAFT_330783 [Daphnia pulex]
Length = 182
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 39/172 (22%)
Query: 292 LVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENN 351
+ ++KPA ++ + N EI + + ++P +EN+
Sbjct: 39 VTEEAAVKPANNKYSSMRNGYEI----------TFNQNTALP-------------NLEND 75
Query: 352 SVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHM 411
S+VD+IG+V Y S + +KN R L + + + E+TL L +
Sbjct: 76 SIVDVIGLVLYSSEFVFIDKKNKV---SRFLEAKLVGSTNTEVTLS---------LLGKL 123
Query: 412 CDSGVFPILAVKAGRVSD-FNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKE 462
D I+A K ++S+ F G + T+S+T + + P EAH+L+EW+ E
Sbjct: 124 VDQ---RIVAYKGVKISNNFGGCYLETLSSTVVQVNPAMNEAHQLREWYNNE 172
>gi|392889706|ref|NP_494734.3| Protein R03H10.7 [Caenorhabditis elegans]
gi|351062334|emb|CCD70304.1| Protein R03H10.7 [Caenorhabditis elegans]
Length = 359
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 107/243 (44%), Gaps = 14/243 (5%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
+ PI L + + I RVT ++ Q K F+F++ D +G I + + A
Sbjct: 114 VTPIENLKESVNYFKIHGRVTLMDTRPPHHYQ----KRFNFEITDFNGDTIACSASSPEA 169
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D FY + + Y ++ G +K + +N D +I L+ ++++ ++P+
Sbjct: 170 DVFYQNLVKEQSYYLAGGHIKKGHEIYNQTGIDYQIDLNNFTIMEPA-PTLLTLPKFNIQ 228
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
++DV ++ +D++ + + KR + + D S + T WG
Sbjct: 229 RVFLSDVANVK--KPIDVLVCIKEFKDVENYTPTENKPPHKRHIQVIDDSKSEIRATFWG 286
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTIST-TQLFIEPDFPEAHRLKE 457
+ D +R + + ++A K ++ NG++ +I+ T++ I+P+ A L+
Sbjct: 287 -YNAVDAIREEFLNK-----VVAFKGVIPTEGNGQLFLSITPGTRIVIQPEVDGAAYLEA 340
Query: 458 WFE 460
WF+
Sbjct: 341 WFD 343
>gi|448312151|ref|ZP_21501901.1| replication factor A [Natronolimnobius innermongolicus JCM 12255]
gi|445602658|gb|ELY56630.1| replication factor A [Natronolimnobius innermongolicus JCM 12255]
Length = 505
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 18/162 (11%)
Query: 244 LRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+R ++ G +GKV + L DS G +RVT ++ AD +++ G V G +K
Sbjct: 187 VRTFDRDDGSEGKVSNLVLGDS-TGRVRVTLWDERAD-LATEIDPGTTVEVVDGYVKERD 244
Query: 303 KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSY 362
LE+ + V+ ED +P PI DVE VDL GVV
Sbjct: 245 GT-------LELHVGNRGAVEEVDEDVEYVPEST----PIEDVE---IGQTVDLAGVVRS 290
Query: 363 ISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDD 404
P + R +G+E Q R + ++D + + + LWG + D
Sbjct: 291 ADPKRTFDRDDGSEGQVRNIRVQDAT-DDIRVALWGEKADTD 331
>gi|414888071|tpg|DAA64085.1| TPA: hypothetical protein ZEAMMB73_996720 [Zea mays]
Length = 191
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 83/177 (46%), Gaps = 7/177 (3%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSD--GGEIRVTCFNAVA 278
P++AL ++ +V K E R +G + H D++ +D G I + +A
Sbjct: 5 PLSALTLQDRNAEVQIQVHRKWEFR---GAVDNGPILHIDMILTDCTGNAIHCQIPSFLA 61
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
+ + GKIY ++R S+ A+ + + DL +++ + ++LC+ + P +H
Sbjct: 62 ATRGDEFQVGKIYKMTRFSVARAKSTYKPVDGDLMLYVKPYTTLELCHTSPSGFPLYVYH 121
Query: 339 FRPIN--DVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVE 393
+ D +G + D++G+++ IS + + + R + ++++ G +V+
Sbjct: 122 LTSYDKIDPDGSNARNFHDVLGIITEISAIKPVGNAHIPSSYNRHVLIKNLRGSTVK 178
>gi|410721996|ref|ZP_11361314.1| single-stranded DNA-binding protein [Methanobacterium sp.
Maddingley MBC34]
gi|410597945|gb|EKQ52546.1| single-stranded DNA-binding protein [Methanobacterium sp.
Maddingley MBC34]
Length = 791
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 18/126 (14%)
Query: 504 ITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQ 563
I V+ +V I+ + + CP CNK+V DG + CD C + + + + I+
Sbjct: 657 IKVTGEVVDIRGNKILFEMCP------NCNKRVNWAEDG-YICDICGEKIEKPNMLMIIS 709
Query: 564 FQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQN----DEKFGE-------VVRN 612
++D TG +T F++ AEE++ M+ + + + +EK G+ V+ +
Sbjct: 710 LMLEDDTGTISITFFRKAAEEVLDMTTAEAEEIIATTGDEGSLEEKVGDLVGRHITVIAD 769
Query: 613 ATFTKY 618
A+F +Y
Sbjct: 770 ASFDEY 775
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 23/185 (12%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
+I P++ + M + + ARV +R ++ DGKV +L D G I+ T +N
Sbjct: 179 DKITPLSEIKGDM-EVNVVARVVRIPRIRSFDRNGRDGKVASLELQDK-SGSIQFTLWNK 236
Query: 277 ----VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASI 332
+ D + +A K+ L ++G + + + NH S + + D +
Sbjct: 237 DTNLIEDLDLKEGDAIKV-LGAQGRARNGEVSLNH------------SWIGRIVKGDFDV 283
Query: 333 PRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSV 392
P I D M N V +IG+VS + T + R +G+ + +++ L D +G ++
Sbjct: 284 PEYHEDILKIGDAHEMRN---VTIIGLVSKVYDTITFERDDGSTGKVKSMELEDDTG-AI 339
Query: 393 ELTLW 397
LTLW
Sbjct: 340 RLTLW 344
>gi|413923473|gb|AFW63405.1| hypothetical protein ZEAMMB73_358085 [Zea mays]
Length = 329
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 23/185 (12%)
Query: 231 KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIR-VTCFNAVADQFYHQVEAGK 289
K++I ARV K + R HF L D +G +I +T F + +
Sbjct: 160 KYSIVARVEVKFPIEPRFRDRQ-----HFILSDINGAKIEAITYMYETVKHFDNLLHGKH 214
Query: 290 IYLVS--RGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRP-----I 342
+Y + + SL P + NF HL+ +E+ LD ++V+ ++P Q F +
Sbjct: 215 VYKMHNVKFSLHPGEFNFRHLNGPMELCLDQQTIVE-----PYTVPIQMAPFPKQILLNL 269
Query: 343 NDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCN 402
D+ + N ++VD++ +V ++ M R + + D G + +WG+ N
Sbjct: 270 ADIAELPNRTLVDIMAIVVHLDTIHRTM-----WGPFRKIVIMDARGYLHIIKVWGDLLN 324
Query: 403 DDGLR 407
+ LR
Sbjct: 325 KNALR 329
>gi|348666728|gb|EGZ06555.1| hypothetical protein PHYSODRAFT_380579 [Phytophthora sojae]
Length = 68
Score = 49.7 bits (117), Expect = 0.007, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 232 WTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIY 291
W+ R+ A+ +R + + R G++F D DG +RVT FN A++F+ + G +
Sbjct: 1 WSFIGRILARSPVRTFKSWRASGRLFRAHFTDRDGATLRVTVFNEGAERFFDVLSPGAVC 60
Query: 292 LVSRGSLK 299
S G +K
Sbjct: 61 SFSNGRIK 68
>gi|448494503|ref|ZP_21609490.1| replication factor A [Halorubrum californiensis DSM 19288]
gi|445689338|gb|ELZ41578.1| replication factor A [Halorubrum californiensis DSM 19288]
Length = 497
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 244 LRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+R ++ G +G+V + + D G +RVT ++ AD + + G++ V G ++
Sbjct: 187 IRTFDRDDGSEGRVANLTVGDE-TGRVRVTLWDDKAD-LAEEFDPGEVVEVGDGYVR--- 241
Query: 303 KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSY 362
DLE+ + V+ ED +P D+ +E + VD+ G V
Sbjct: 242 ----ERDGDLELHVGDRGTVERVDEDVEYVP-------ETTDIADLEIDQTVDIGGGVIE 290
Query: 363 ISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAV 422
P + R +G+E Q R + ++D +G + + LWG+ + R + D VF + +
Sbjct: 291 TDPKRTFDRDDGSEGQVRNVRIKDETG-EIRVALWGDKAD----REIDLADRVVFTDVEI 345
Query: 423 KAGRVSDFN 431
+ G D
Sbjct: 346 QDGWQDDLE 354
Score = 43.1 bits (100), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 98/216 (45%), Gaps = 27/216 (12%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHY---NNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
IA + P M + +VTA GE+R + + + +G+V + D+ D+ G +RV ++ +A
Sbjct: 56 IADIEPGMNEVKFLGKVTAIGEIRTFERDDEEADEGRVCNVDVADA-SGSVRVALWDDMA 114
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
++E G++ V + ++ ++ L S ++ ++DA + Q
Sbjct: 115 AAAEEELEVGQVIRV----MGRPKEGYSGLE---------VSADKVEPDEDAEVDVQVLD 161
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
+ D+ S VDL+G V + R +G+E + L + D +GR V +TLW
Sbjct: 162 TYRVEDL--ALGASDVDLVGQVLDTDSIRTFDRDDGSEGRVANLTVGDETGR-VRVTLW- 217
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKV 434
DD L D G ++ V G V + +G +
Sbjct: 218 ----DDKADLAEEFDPG--EVVEVGDGYVRERDGDL 247
>gi|448347285|ref|ZP_21536161.1| replication factor A [Natrinema altunense JCM 12890]
gi|445631035|gb|ELY84282.1| replication factor A [Natrinema altunense JCM 12890]
Length = 476
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 20/161 (12%)
Query: 244 LRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+R ++ G +GKV + L DS G +RVT ++ AD ++EAG V G +K
Sbjct: 186 VRTFDRDDGSEGKVSNLVLGDS-TGRVRVTLWDEQAD-LATELEAGTTVEVIDGYVKDRD 243
Query: 303 KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPIND-VEGMENNSVVDLIGVVS 361
+ LE+ + V+ E DA++ + P N +E +E + VVDL GVV
Sbjct: 244 GS-------LELHVGNRGTVE---EIDATV-----EYVPENTPIEDVEIDQVVDLAGVVR 288
Query: 362 YISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCN 402
P + R +G+E Q R + ++D + + + LWG+ +
Sbjct: 289 SADPKRTFDRDDGSEGQVRNIRVQDAT-DDIRVALWGDKAD 328
Score = 42.7 bits (99), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 92/191 (48%), Gaps = 25/191 (13%)
Query: 210 VGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHY--NNQRGDGKVFHFDLLDSDGG 267
VG+SEV IA + P M + A+V + GE R + + + DG+V + ++ D G
Sbjct: 48 VGESEVGG----IADIEPGMEEAKFVAKVLSIGEKRTFERDGEDEDGQVVNVEVADE-TG 102
Query: 268 EIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE 327
+R ++ A+ ++E G++ ++ +P ++ F+ + EI +D + +
Sbjct: 103 SVRAAFWDDHAEAAIDELEEGQVLRIAG---RP-KEGFSGV----EISVD-----NVEPD 149
Query: 328 DDASIPRQQFHFRPINDVE-GMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRD 386
D I Q + D+ G+ N V+L+GV+ + R +G+E + L L D
Sbjct: 150 PDTEIDVQVSDTYTVEDLSLGLSN---VNLVGVLLDTDSVRTFDRDDGSEGKVSNLVLGD 206
Query: 387 MSGRSVELTLW 397
+GR V +TLW
Sbjct: 207 STGR-VRVTLW 216
>gi|357488297|ref|XP_003614436.1| Replication protein A1-like protein [Medicago truncatula]
gi|355515771|gb|AES97394.1| Replication protein A1-like protein [Medicago truncatula]
Length = 578
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/275 (20%), Positives = 113/275 (41%), Gaps = 45/275 (16%)
Query: 208 GLVGKSEVPSRII----------PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVF 257
G +VPS I+ I +N + W I RV + + N++ V
Sbjct: 49 GCTSAEKVPSSILHPATMARPLQKIKNINDFKSLWKIAVRVVDMWTVANSKNKQHIEMV- 107
Query: 258 HFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEI--- 314
L D + I++ + DQF G+I + +L+ NF+ N++ I
Sbjct: 108 ---LCDKEVDRIQIILPFELKDQF-----KGRIVENTTFTLQ----NFDVEKNEMSIKAT 155
Query: 315 ----FLDMTSMVQLCYEDDASIPRQQFHFRPINDVE--GMENNSVVDLIGVVSYISPTAS 368
+L + D IP+ F+F+ ++++ + + ++D+IG + +
Sbjct: 156 DHPFWLVFNGGTSVDNIDKHDIPKPSFNFKDFDEIKKGALRPDVLIDVIGAFHELGYNQT 215
Query: 369 LMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVF--PILAVKAGR 426
+ G+ + ++D+ G + TLW +F GL+ + C++ F I+ + +
Sbjct: 216 ---QAGSRKIQINFWMKDLKGTLLSCTLWEDF----GLQFLNFCNNSEFGPTIILLHNAK 268
Query: 427 VSDFNGK----VVGTISTTQLFIEPDFPEAHRLKE 457
+ + K V + T+LFI P+F E K+
Sbjct: 269 IKEATYKYELGVSNAWNATKLFINPEFLEVLEFKQ 303
>gi|357470781|ref|XP_003605675.1| hypothetical protein MTR_4g036240 [Medicago truncatula]
gi|355506730|gb|AES87872.1| hypothetical protein MTR_4g036240 [Medicago truncatula]
Length = 480
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 143/322 (44%), Gaps = 35/322 (10%)
Query: 330 ASIPRQQFHFRPINDVEG--MENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDM 387
A + F F PI+D+ G + + +VD+IG+++ + T +NG+ T+ + + +
Sbjct: 33 ALVSGSDFKFVPISDIVGGSYDCDYLVDVIGMLTGVG-TEREYERNGSATKLNVIAM-EA 90
Query: 388 SGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDF--NGKVVGTISTTQLFI 445
G ++ TL+G + ++ L + V +++++ +V F N + ++ T+L
Sbjct: 91 DGYKLQCTLFGTYVDELNTFLATGETANV--VVSIQLAKVKVFQDNIHIQNCLNCTRLKF 148
Query: 446 EPDFPEA----HRLKEWFEKEGKNTQ-SVSISRDSLSVGRADI-RKTVSQIKDEGLGTKE 499
P E +R+ E + TQ +V S D L + R T+ +KD +++
Sbjct: 149 NPVCVEGTAFKNRMIENDDTPSPLTQLAVEPSIDPLQDFLFNTPRTTIQGLKD----SQQ 204
Query: 500 KPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYR 559
+ ++ + + +N+ YTAC CNK V +G C++C++ VV+ R
Sbjct: 205 EGMYVVLGTVKQIVNPENWYYTACM-------CNKSVYP-AEGMHFCEKCNRHVVKVFPR 256
Query: 560 YILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQN--DEKFGEVVRNATFTK 617
Y ++ ++ D + F A + S D+ D+ + +V N T
Sbjct: 257 YSIKVRVVDDSDCATFVLFDRDATMLFNKSCADILETHRADEGVLPTEIAALV-NCT--- 312
Query: 618 YLFKLKVKEET---FSDEQRVK 636
YLFK++ K F RVK
Sbjct: 313 YLFKVEFKTAISPRFEQSFRVK 334
>gi|125811606|ref|XP_001361942.1| GA17695 [Drosophila pseudoobscura pseudoobscura]
gi|54637118|gb|EAL26521.1| GA17695 [Drosophila pseudoobscura pseudoobscura]
Length = 159
Score = 49.3 bits (116), Expect = 0.008, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 741 RQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARD 800
R+ C C GH + CP + +G G+ S A + CY+C+KTGHW R+
Sbjct: 48 REKCYKCNQFGHFARACPEEAERCYRCNGIGH---ISKDCTQADNPTCYRCNKTGHWVRN 104
Query: 801 CP-SLNAAPPA 810
CP ++N PA
Sbjct: 105 CPEAVNERGPA 115
Score = 42.0 bits (97), Expect = 1.4, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 21/81 (25%)
Query: 737 TSAARQSCSSCGAVGHSSMNCPSIMS--GPGQSSGGGYANSFSSGAGIATSSECYKCHKT 794
T A +C C GH NCP ++ GP S CYKC++T
Sbjct: 85 TQADNPTCYRCNKTGHWVRNCPEAVNERGPANVS-------------------CYKCNRT 125
Query: 795 GHWARDCPSLNAAPPAYGSSG 815
GH +++CP + G SG
Sbjct: 126 GHISKNCPETSKTCYGCGKSG 146
>gi|125577977|gb|EAZ19199.1| hypothetical protein OsJ_34740 [Oryza sativa Japonica Group]
Length = 442
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 10/128 (7%)
Query: 330 ASIPRQQFHFRPINDVEGMENNS--VVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDM 387
+SIP F F P + + S ++DLIGV+S++ P + + + R L +R+
Sbjct: 35 SSIPNYGFEFCPFDQIPSKSRISKPLIDLIGVISHVGPYDYAGKTSS--KKNRKLKIRNK 92
Query: 388 SGRSVELTLWGNFCN--DDGLRLQHMCDSGVFPILAVKAGRVS-DFNGKVVGTIST-TQL 443
+ E+ LWG + D+ LQ D + ++A+ AG + + GK T S+ TQ+
Sbjct: 93 DEQEQEIVLWGEYGESFDEAFVLQKSTDHKI--VVAILAGLTAGTYLGKTEATSSSATQI 150
Query: 444 FIEPDFPE 451
+ + D E
Sbjct: 151 YFDSDITE 158
>gi|413922042|gb|AFW61974.1| hypothetical protein ZEAMMB73_162126 [Zea mays]
Length = 336
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 85/187 (45%), Gaps = 27/187 (14%)
Query: 231 KWTIKARVTAKG--ELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFY----HQ 284
K++I ARV K E R+ + Q HF L D +G +I + +V + + H+
Sbjct: 96 KYSIVARVEVKFPIEPRYRDRQ-------HFILSDINGAKIEAITYVSVTVKHFNNLLHE 148
Query: 285 VEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPIND 344
++ V G L P + NF HL+ +E++ + ++V+ P + F ++D
Sbjct: 149 KHVYNMHNVKFG-LHPGEFNFRHLNGPMELYFNQQTIVEPYTVPIQMPPFPKHIFFNLDD 207
Query: 345 VEGMENNSVVDLIGVVSYISPTASLM----RKNGTETQKRTLHLRDMSGRSVELTLWGNF 400
+ + N ++VD++ +V ++ M RK + +LH+ + +WG+
Sbjct: 208 IAELPNRTLVDIMAIVVHMDTIHRTMWGPFRKIVIMDARGSLHI---------IKVWGDL 258
Query: 401 CNDDGLR 407
N + LR
Sbjct: 259 LNKNALR 265
>gi|448282722|ref|ZP_21474006.1| replication factor A [Natrialba magadii ATCC 43099]
gi|445575686|gb|ELY30154.1| replication factor A [Natrialba magadii ATCC 43099]
Length = 487
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 18/168 (10%)
Query: 238 VTAKGELRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG 296
V G +R ++ G +GKV + L DS G +RVT ++ AD ++EAG V G
Sbjct: 180 VLDTGTVRTFDRDDGSEGKVSNLVLGDS-SGRVRVTLWDEQAD-LATEIEAGTTVEVVDG 237
Query: 297 SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDL 356
+K + LE+ + V+ + +P +E +E VDL
Sbjct: 238 YVKERDGS-------LELHVGNRGAVEEVDAEVEYVPES-------TSIESIEIGQEVDL 283
Query: 357 IGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDD 404
GVV P + R +G+E Q R + ++D +G + + LWG + D
Sbjct: 284 AGVVRSADPKRTFDRDDGSEGQVRNIRVQDATG-DIRVALWGEKADID 330
Score = 40.4 bits (93), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 87/191 (45%), Gaps = 25/191 (13%)
Query: 210 VGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHY--NNQRGDGKVFHFDLLDSDGG 267
+G+SEV IA + P M A+V + GE R + + + DG+V + ++ D + G
Sbjct: 48 IGESEVGG----IADIEPSMEVAKFVAKVLSIGERRTFERDGEDEDGQVVNVEVAD-ETG 102
Query: 268 EIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDL-EIFLDMTSMVQLCY 326
+R ++ A+ ++E G++ + +G +P + F+ + + E+ D + V +
Sbjct: 103 SVRAAFWDEHAEAALGELEEGQVLRI-KG--RP-KDGFSGVEVSVDEVEPDPDTEVDVQV 158
Query: 327 EDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRD 386
D ++ +N L+G+V + R +G+E + L L D
Sbjct: 159 SDTHTVESLSLGLSNVN------------LVGLVLDTGTVRTFDRDDGSEGKVSNLVLGD 206
Query: 387 MSGRSVELTLW 397
SGR V +TLW
Sbjct: 207 SSGR-VRVTLW 216
>gi|401420036|ref|XP_003874507.1| universal minicircle sequence binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490743|emb|CBZ26007.1| universal minicircle sequence binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 182
Score = 48.9 bits (115), Expect = 0.010, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 738 SAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFS------SGAGIATSSECYKC 791
+AA +SC +CG GH S +CPS P G S + AG T S CY C
Sbjct: 89 AAATRSCYNCGETGHMSRDCPS-ERKPKSCYNCGSTEHLSRECTNEAKAGADTRS-CYNC 146
Query: 792 HKTGHWARDCPS 803
TGH +RDCP+
Sbjct: 147 GGTGHMSRDCPN 158
Score = 42.0 bits (97), Expect = 1.5, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 22/61 (36%)
Query: 743 SCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCP 802
+C CG GH S +CP A + CY C +TGH +RDCP
Sbjct: 72 TCYKCGEAGHMSRSCPRA----------------------AATRSCYNCGETGHMSRDCP 109
Query: 803 S 803
S
Sbjct: 110 S 110
>gi|297822339|ref|XP_002879052.1| hypothetical protein ARALYDRAFT_901564 [Arabidopsis lyrata subsp.
lyrata]
gi|297324891|gb|EFH55311.1| hypothetical protein ARALYDRAFT_901564 [Arabidopsis lyrata subsp.
lyrata]
Length = 496
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 87/433 (20%), Positives = 169/433 (39%), Gaps = 60/433 (13%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNN-QRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
I +NP + IK + LR + QR G L+D G I T + +
Sbjct: 14 IDDINPIHDQNKIKVLI-----LRLWKAYQRDAGNTIEMVLVDEKGSRIHATVEDKNIKK 68
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
F ++ G + ++ L ++ +I T+ V+ C + +P + +F
Sbjct: 69 FDSVLKEGDVVTLNPFKLIKYSGDYKSNSLSFKILFYRTTQVKPCDDFPKEVPEK--YFV 126
Query: 341 PINDV-EGMENNSV-VDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
DV G + V VD+IG + + P + + G T K + LRD + TLW
Sbjct: 127 EFGDVLNGSRDTRVFVDVIGQIVNVGPIEDI-KIRGKSTPKLDVELRDRGNVWLICTLWA 185
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGK--VVGTISTTQLFIEPDFPEAHRLK 456
+F +++ + + ++ +V ++ G + + T++ ++P +
Sbjct: 186 DFAKQ--VKVYTEANPAAV-VCVIRCAQVKEWKGNWTISNAMGATRVLLDPPGVFVDEFR 242
Query: 457 EWFEKEG------KNTQ-----SVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWIT 505
+G N++ +VSI L + + + +EG+ +T
Sbjct: 243 SGLPNDGVVLTNLDNSELFAGSTVSIRDQFLVKNHKRTVRDIVEALEEGMCVT----MVT 298
Query: 506 VSATIVYIKCDNFCYTACPIMIGDRPCNKKVM----NNGDG----RWHCDRCDQSVVECD 557
V + + + Y +C + CNK V N+GD ++C CD+ V
Sbjct: 299 VGSVE---RTSKWYYVSCKM------CNKSVEPYPENSGDDGKPPLYYCGICDKDVSAVV 349
Query: 558 YRYILQFQIQDHTGL-TWVTAFQECAEEIMGMSAKDLYSLKYVDQND-----EKFGEVVR 611
+RY L ++ D T F ++ +A++LY+ V +ND + G +V
Sbjct: 350 FRYRLVLEVSDATNYKARFLLFDAMGSTLLRRTAQELYNA--VSENDPSILPSEIGALVG 407
Query: 612 NATFTKYLFKLKV 624
++LFK+ +
Sbjct: 408 R----RFLFKVSI 416
>gi|289581867|ref|YP_003480333.1| OB-fold tRNA/helicase-type nucleic acid binding protein [Natrialba
magadii ATCC 43099]
gi|289531420|gb|ADD05771.1| nucleic acid binding OB-fold tRNA/helicase-type [Natrialba magadii
ATCC 43099]
Length = 492
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 18/168 (10%)
Query: 238 VTAKGELRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG 296
V G +R ++ G +GKV + L DS G +RVT ++ AD ++EAG V G
Sbjct: 185 VLDTGTVRTFDRDDGSEGKVSNLVLGDS-SGRVRVTLWDEQAD-LATEIEAGTTVEVVDG 242
Query: 297 SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDL 356
+K + LE+ + V+ + +P +E +E VDL
Sbjct: 243 YVKERDGS-------LELHVGNRGAVEEVDAEVEYVPES-------TSIESIEIGQEVDL 288
Query: 357 IGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDD 404
GVV P + R +G+E Q R + ++D +G + + LWG + D
Sbjct: 289 AGVVRSADPKRTFDRDDGSEGQVRNIRVQDATG-DIRVALWGEKADID 335
Score = 40.0 bits (92), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 87/191 (45%), Gaps = 25/191 (13%)
Query: 210 VGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHY--NNQRGDGKVFHFDLLDSDGG 267
+G+SEV IA + P M A+V + GE R + + + DG+V + ++ D + G
Sbjct: 53 IGESEVGG----IADIEPSMEVAKFVAKVLSIGERRTFERDGEDEDGQVVNVEVAD-ETG 107
Query: 268 EIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDL-EIFLDMTSMVQLCY 326
+R ++ A+ ++E G++ + +G +P + F+ + + E+ D + V +
Sbjct: 108 SVRAAFWDEHAEAALGELEEGQVLRI-KG--RP-KDGFSGVEVSVDEVEPDPDTEVDVQV 163
Query: 327 EDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRD 386
D ++ +N L+G+V + R +G+E + L L D
Sbjct: 164 SDTHTVESLSLGLSNVN------------LVGLVLDTGTVRTFDRDDGSEGKVSNLVLGD 211
Query: 387 MSGRSVELTLW 397
SGR V +TLW
Sbjct: 212 SSGR-VRVTLW 221
>gi|297838105|ref|XP_002886934.1| hypothetical protein ARALYDRAFT_894112 [Arabidopsis lyrata subsp.
lyrata]
gi|297332775|gb|EFH63193.1| hypothetical protein ARALYDRAFT_894112 [Arabidopsis lyrata subsp.
lyrata]
Length = 496
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 87/433 (20%), Positives = 169/433 (39%), Gaps = 60/433 (13%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNN-QRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
I +NP + IK + LR + QR G L+D G I T + +
Sbjct: 14 IDDINPIHDQNKIKVLI-----LRLWKAYQRDAGNTIEMVLVDEKGSRIHATVEDKNIKK 68
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
F ++ G + ++ L ++ +I T+ V+ C + +P + +F
Sbjct: 69 FDSVLKEGDVVTLNPFKLIKYSGDYKSNSLSFKILFYRTTQVKPCDDFPKEVPEK--YFV 126
Query: 341 PINDV-EGMENNSV-VDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
DV G + V VD+IG + + P + + G T K + LRD + TLW
Sbjct: 127 EFGDVLNGSRDTRVFVDVIGQIVNVGPIEDI-KIRGKSTPKLDVELRDRGNVRLICTLWA 185
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGK--VVGTISTTQLFIEPDFPEAHRLK 456
+F +++ + + ++ +V ++ G + + T++ ++P +
Sbjct: 186 DFAKQ--VKVYTEANPAAV-VCVIRCAQVKEWKGNWTISNAMGATRVLLDPPGVFVDEFR 242
Query: 457 EWFEKEG------KNTQ-----SVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWIT 505
+G N++ +VSI L + + + +EG+ +T
Sbjct: 243 SGLPTDGVVLTNHDNSELFAGSTVSIRDQFLVKNHKRTVRDIVEALEEGMCVT----MVT 298
Query: 506 VSATIVYIKCDNFCYTACPIMIGDRPCNKKVM----NNGDG----RWHCDRCDQSVVECD 557
V + + + Y +C + CNK V N+GD ++C CD+ V
Sbjct: 299 VGSVE---RTSKWYYVSCKM------CNKSVEPYPENSGDDGKPPLYYCGVCDKDVSAVV 349
Query: 558 YRYILQFQIQDHTGL-TWVTAFQECAEEIMGMSAKDLYSLKYVDQND-----EKFGEVVR 611
+RY L ++ D T F ++ +A++LY+ V +ND + G +V
Sbjct: 350 FRYRLVLEVFDATNYKARFLLFDAMGSTLLRRTAQELYNA--VSENDPSILPSEIGALVG 407
Query: 612 NATFTKYLFKLKV 624
++LFK+ +
Sbjct: 408 R----RFLFKVSI 416
>gi|98986202|dbj|BAE94497.1| Vasa [Polyandrocarpa misakiensis]
Length = 705
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 18/118 (15%)
Query: 719 QMGQYGNQYSGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSS 778
+ GQ G+ A+G + A++ C CG GH S +CPS +S G F
Sbjct: 73 KCGQEGHMSRDCTSGASGDTQAKK-CFKCGEEGHMSRDCPS------NTSTGSSKACFKC 125
Query: 779 GAGIATSSEC-----------YKCHKTGHWARDCPSLNAAPPAYGSSGIGISAAGYRG 825
G S EC +KC + GH +R+CP+ N++ +G+S G G
Sbjct: 126 GEEGHMSRECPNNNNNNSKACFKCGEEGHMSRECPNNNSSKDGFGTSSRACFKCGEEG 183
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 11/119 (9%)
Query: 702 YVGNNSNAGAASGLLANQMGQYGNQYSGSR-LPAAGTSAARQSCSSCGAVGHSSMNCPS- 759
++ + +GA+ A + + G + SR P+ ++ + ++C CG GH S CP+
Sbjct: 79 HMSRDCTSGASGDTQAKKCFKCGEEGHMSRDCPSNTSTGSSKACFKCGEEGHMSRECPNN 138
Query: 760 --------IMSGPGQSSGGGYANSFSSGAGIATSSE-CYKCHKTGHWARDCPSLNAAPP 809
G N+ SS G TSS C+KC + GH +R+CP P
Sbjct: 139 NNNNSKACFKCGEEGHMSRECPNNNSSKDGFGTSSRACFKCGEEGHMSRECPKAGEPDP 197
>gi|4126714|dbj|BAA36710.1| DEAD-Box Protein [Ciona intestinalis]
Length = 669
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 726 QYSGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATS 785
Q +GS + A + C CG GH S CP Q++G G+ +S G A S
Sbjct: 68 QNTGSGFGDSRGGARSKGCFKCGEEGHMSRECP-------QNTGSGFGDS----RGGARS 116
Query: 786 SECYKCHKTGHWARDCP 802
C+KC + GH +R+CP
Sbjct: 117 KGCFKCGEEGHMSRECP 133
Score = 48.1 bits (113), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 18/86 (20%)
Query: 739 AARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWA 798
A + C CG GH S CP Q++G G+ +S G A S C+KC + GH +
Sbjct: 48 ARSKGCFKCGEEGHMSRECP-------QNTGSGFGDS----RGGARSKGCFKCGEEGHMS 96
Query: 799 RDCPSLNAAPPAYGSSGIGISAAGYR 824
R+CP SG G S G R
Sbjct: 97 RECPQNTG-------SGFGDSRGGAR 115
>gi|361069979|gb|AEW09301.1| Pinus taeda anonymous locus UMN_2879_01 genomic sequence
gi|383157669|gb|AFG61167.1| Pinus taeda anonymous locus UMN_2879_01 genomic sequence
gi|383157671|gb|AFG61168.1| Pinus taeda anonymous locus UMN_2879_01 genomic sequence
gi|383157673|gb|AFG61169.1| Pinus taeda anonymous locus UMN_2879_01 genomic sequence
gi|383157675|gb|AFG61170.1| Pinus taeda anonymous locus UMN_2879_01 genomic sequence
gi|383157677|gb|AFG61171.1| Pinus taeda anonymous locus UMN_2879_01 genomic sequence
gi|383157679|gb|AFG61172.1| Pinus taeda anonymous locus UMN_2879_01 genomic sequence
gi|383157681|gb|AFG61173.1| Pinus taeda anonymous locus UMN_2879_01 genomic sequence
gi|383157683|gb|AFG61174.1| Pinus taeda anonymous locus UMN_2879_01 genomic sequence
Length = 94
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 31/47 (65%)
Query: 420 LAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNT 466
+AV+A +VSD++G + T + L I PD P A +L+ W++ +GK +
Sbjct: 1 IAVRAAKVSDYSGVSLSTTGRSTLMINPDLPVAQKLRSWYDTDGKGS 47
>gi|340053079|emb|CCC47365.1| conserved hypothetical protein [Trypanosoma vivax Y486]
Length = 578
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 12/174 (6%)
Query: 237 RVTAKGELRHYNN-QRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSR 295
R+ KG+LR ++ D VF LDS+G I CF + FY +AG+ V+
Sbjct: 186 RMIWKGKLRKFSTGHSADRFVFGCVALDSEGDAILTECFGSAP--FYDMFDAGECVQVTN 243
Query: 296 GSLKPAQKNFNHLHNDLEIFLDMTSMVQLC-YEDDASIPRQQFHF--RPINDVEG-MENN 351
SL K + + L+I ++++ + Y++D F F + + D G +E
Sbjct: 244 VSLAHHDKPGHGVR--LQISEQISTVKRSAEYQNDNFPLHPCFMFGSKAVGDAAGYVEVG 301
Query: 352 SVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRS--VELTLWGNFCND 403
+V + G+V+ + P+A ++ + G Q + L L+D + S +E+ LWG+ D
Sbjct: 302 DIVSVEGIVAAVFPSALVVTRRGRVEQSKLL-LQDYTSPSATLEVVLWGDMSQD 354
>gi|74096143|ref|NP_001027593.1| DEAD-Box Protein [Ciona intestinalis]
gi|4126716|dbj|BAA36711.1| DEAD-Box Protein [Ciona intestinalis]
Length = 659
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 726 QYSGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATS 785
Q +GS + A + C CG GH S CP Q++G G+ +S G A S
Sbjct: 68 QNTGSGFGDSRGGARSKGCFKCGEEGHMSRECP-------QNTGSGFGDS----RGGARS 116
Query: 786 SECYKCHKTGHWARDCP 802
C+KC + GH +R+CP
Sbjct: 117 KGCFKCGEEGHMSRECP 133
Score = 48.1 bits (113), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 18/86 (20%)
Query: 739 AARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWA 798
A + C CG GH S CP Q++G G+ +S G A S C+KC + GH +
Sbjct: 48 ARSKGCFKCGEEGHMSRECP-------QNTGSGFGDS----RGGARSKGCFKCGEEGHMS 96
Query: 799 RDCPSLNAAPPAYGSSGIGISAAGYR 824
R+CP SG G S G R
Sbjct: 97 RECPQNTG-------SGFGDSRGGAR 115
>gi|383620357|ref|ZP_09946763.1| replication factor A [Halobiforma lacisalsi AJ5]
gi|448695765|ref|ZP_21697514.1| replication factor A [Halobiforma lacisalsi AJ5]
gi|445784219|gb|EMA35036.1| replication factor A [Halobiforma lacisalsi AJ5]
Length = 487
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 18/160 (11%)
Query: 244 LRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+R ++ G +GKV + L DS G IRVT ++ A + ++EAG V G ++
Sbjct: 186 VRTFDRDDGSEGKVSNVTLGDS-TGRIRVTLWDEQA-ETAEELEAGTTVEVVDGYVRERD 243
Query: 303 KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSY 362
N LE+ + ++ E+ +P PI DVE VDL GVV
Sbjct: 244 GN-------LELHVGNRGAIEEVDEEVEYVPDST----PIEDVE---MGQTVDLAGVVRS 289
Query: 363 ISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCN 402
P + R +G+E Q R + ++D +G + + LWG +
Sbjct: 290 ADPKRTFDRDDGSEGQVRNVRIQDATG-DIRVALWGEKAD 328
>gi|413932344|gb|AFW66895.1| hypothetical protein ZEAMMB73_049939 [Zea mays]
Length = 413
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 92/235 (39%), Gaps = 12/235 (5%)
Query: 355 DLIGVVSYISPTASLMRK-NGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCD 413
D+IG V+ IS A++ K T+T KR++ +++ S +E+ LWG +
Sbjct: 29 DVIGAVTMISDVATIRTKMRQTQTAKRSVTIQNESCTPLEVVLWGGQATSFPADQISIAG 88
Query: 414 SGVFPILAVKAGRVSDFNGKVVGT-ISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSIS 472
I+ + G T S+ + ++ P PEA L + + S + S
Sbjct: 89 QDSLQIIIFVGTLARSYAGTTSLTGGSSCKWYVNPQVPEATSLAASLQHKRSPIMSAAGS 148
Query: 473 RDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDN-FCYTACPIMIGDRP 531
+ K VS+IK EK +W+ T+ +K D + Y +C R
Sbjct: 149 TQRVPRISTAEHKKVSEIKHLHPFKHEKVEWL---VTVTVLKIDQLWWYESC------RK 199
Query: 532 CNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIM 586
C KK +GD D V + RY L D G T F A+ I+
Sbjct: 200 CLKKTKPHGDAYKCSDSGCGHVGPPNPRYRLLITAGDEIGETDFILFGRMAQRIV 254
>gi|448457207|ref|ZP_21595702.1| replication factor A [Halorubrum lipolyticum DSM 21995]
gi|445810788|gb|EMA60803.1| replication factor A [Halorubrum lipolyticum DSM 21995]
Length = 502
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 20/184 (10%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGD---GKVFHFDLLDSDGGEIRVTCFNAVA 278
IA + P M +VT+ GE++ + D G+V + D+ D+ G +RV ++ +A
Sbjct: 56 IADIEPGMNDVKFLGKVTSIGEIKTFERDEEDAEEGRVCNVDVADA-SGSVRVALWDEMA 114
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
Q+E G++ V +G K ++ LE+ D ++ ++DA + Q
Sbjct: 115 AAAEEQLEVGQVLRV-KGRPKEG-------YSGLEVSAD-----KVERDEDAEVDVQVLD 161
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
+ D+ S VDL+G V + R +G+E + L + D +GR V +TLW
Sbjct: 162 TYRVEDL--SLGASDVDLVGQVLDTDSIRTFDRDDGSEGRVANLTVGDETGR-VRVTLWD 218
Query: 399 NFCN 402
+ +
Sbjct: 219 DKAD 222
Score = 47.8 bits (112), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 81/189 (42%), Gaps = 22/189 (11%)
Query: 244 LRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+R ++ G +G+V + + D G +RVT ++ AD + E ++ V G ++
Sbjct: 187 IRTFDRDDGSEGRVANLTVGDE-TGRVRVTLWDDKAD-LADEFEPAEVVEVGDGYVR--- 241
Query: 303 KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSY 362
DLE+ + V+ ED +P D+ +E VD+ G V
Sbjct: 242 ----ERDGDLELHVGDRGTVERVEEDVEYVP-------ETTDIAELEIGETVDIGGGVIE 290
Query: 363 ISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAV 422
P + R +G+E Q R + ++D +G + + LWG+ + R + D VF + +
Sbjct: 291 TDPVRTFDRDDGSEGQVRNVRVKDDTG-EIRVALWGDKAD----REIELADRVVFTDVEI 345
Query: 423 KAGRVSDFN 431
+ G D
Sbjct: 346 QDGWQDDLE 354
>gi|319921907|gb|ADV78572.1| universal minicircle sequence-binding protein 2 [Leishmania
donovani]
Length = 175
Score = 48.9 bits (115), Expect = 0.013, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 738 SAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFS------SGAGIATSSECYKC 791
+AA +SC +CG GH S +CPS P G + S + AG T S CY C
Sbjct: 82 AAATRSCYNCGETGHMSRDCPS-ERKPKSCYNCGSTDHLSRECTNEAKAGADTRS-CYNC 139
Query: 792 HKTGHWARDCPS 803
TGH +RDCP+
Sbjct: 140 GGTGHLSRDCPN 151
Score = 41.2 bits (95), Expect = 2.4, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 22/61 (36%)
Query: 743 SCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCP 802
+C CG GH S +CP A + CY C +TGH +RDCP
Sbjct: 65 TCYKCGEAGHMSRSCPRA----------------------AATRSCYNCGETGHMSRDCP 102
Query: 803 S 803
S
Sbjct: 103 S 103
>gi|448684242|ref|ZP_21692707.1| replication factor A [Haloarcula japonica DSM 6131]
gi|445783115|gb|EMA33951.1| replication factor A [Haloarcula japonica DSM 6131]
Length = 486
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 18/184 (9%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
I AL +++ V +R ++ G +G+V + L D G IRVT ++ AD+
Sbjct: 165 IDALTMGQSDVSLRGLVLDTDSIRTFDRDDGSEGRVSNLTLGDE-TGRIRVTLWDDRADR 223
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
+++AG + G ++ + LE+ + V +D A P
Sbjct: 224 -AEELDAGAAVEIIDGYVRERDGS-------LELHVGDQGAVDEVEDDVAFEP----DAN 271
Query: 341 PINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNF 400
PI++VE E VD+ GVV P + R +G+E Q R + ++D +G + + LWG+
Sbjct: 272 PISEVELEET---VDIAGVVRSADPKRTFDRDDGSEGQVRNVRIQDATG-DIRVALWGDK 327
Query: 401 CNDD 404
+ D
Sbjct: 328 ADKD 331
>gi|413915876|gb|AFW55808.1| hypothetical protein ZEAMMB73_980277 [Zea mays]
Length = 421
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 25/186 (13%)
Query: 231 KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA----DQFYHQVE 286
K++I ARV K + R HF L D +G +I + D H+
Sbjct: 181 KYSIVARVEVKFPIEPRFRDRQ-----HFVLSDINGAKIEAITYMYETVKHFDNLLHEKH 235
Query: 287 AGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRP----- 341
K++ V + SL P + NF HL+ +E+ LD ++V+ ++P Q F
Sbjct: 236 VYKMHNV-KFSLHPGEFNFRHLNGPMELCLDQQTIVE-----PYTVPIQMAPFPKQILLN 289
Query: 342 INDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFC 401
+ D+ + N ++VD++ VV ++ M R + + D G + +WG+
Sbjct: 290 LADIAELLNRTLVDIMAVVVHLDTIHRTM-----WGPFRKIVIMDARGYLHIIKVWGDLL 344
Query: 402 NDDGLR 407
N + LR
Sbjct: 345 NKNALR 350
>gi|413943269|gb|AFW75918.1| hypothetical protein ZEAMMB73_045866 [Zea mays]
Length = 514
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/193 (19%), Positives = 85/193 (44%), Gaps = 9/193 (4%)
Query: 266 GGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLC 325
G I A+ D ++ K+Y + R + P++ + + N + I + + ++
Sbjct: 2 GTSIHAEIQAALVDDKGSLIQIDKVYELKRFRVAPSRNYYKPVDNSMMIQFTLYTQAKVV 61
Query: 326 YEDDASIPRQQFHFRPINDVEGMENNS--VVDLIGVVSYISPTASLMRKNGTETQKRTLH 383
+ + PR + ++ +N ++D++G+++ I + N R +
Sbjct: 62 EDPPPTFPRYAYKLTSFENIGNNVDNKTYLIDVLGILTEIGSLYHVGYNNSNII--RDIF 119
Query: 384 LRDMSGRSVELTLWGNFCNDDGLRLQHMCDSG-VFPILAVKAGRVSD-FNGKVVGTISTT 441
L+D++ S ++TLWG+ + ++CD PI+ + G ++ F G+ + +T
Sbjct: 120 LKDINNTSTKVTLWGH--QASSFSVDNICDENDNKPIVVLFVGCLAKRFKGEAYLSATTA 177
Query: 442 -QLFIEPDFPEAH 453
+ PD PEA
Sbjct: 178 CTWYFNPDIPEAQ 190
>gi|403166354|ref|XP_003326221.2| DNA topoisomerase III [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375166208|gb|EFP81802.2| DNA topoisomerase III [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1124
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 46/118 (38%), Gaps = 16/118 (13%)
Query: 719 QMGQYGNQYSGSRLPAAGT-------SAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGG 771
+ GQ G+ S P+ G S + +C SC GH S CP+ GP G
Sbjct: 991 KCGQQGHWSSECPNPSQGNNNKSIQPSGSNYTCFSCNEQGHLSTTCPN-KDGPVGGKG-- 1047
Query: 772 YANSFSSGAGIATSSECYKCHKTGHWARDCPSLNAAPPAYGSSGIGISAAGYRGAPRQ 829
G T +C+ C++ GHWA CPS N A S G PR+
Sbjct: 1048 ------KAGGSTTGQKCFHCNQVGHWANACPSKNDGSAASSSRARGARRGSATRRPRK 1099
>gi|73668500|ref|YP_304515.1| replication factor A [Methanosarcina barkeri str. Fusaro]
gi|72395662|gb|AAZ69935.1| replication factor-A protein [Methanosarcina barkeri str. Fusaro]
Length = 484
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 96/216 (44%), Gaps = 23/216 (10%)
Query: 189 YARTPQAPYMQSPSM-YANRGLVGKSE----VPSRIIPIAALNPYMGKWTIKARVTAKGE 243
YAR + + Q + NR ++ KSE PI + M + RV GE
Sbjct: 243 YAR--ENAFTQKVELQVGNRSIIKKSEKKVEYEEEFAPIEDIRADMNNINVSGRVLDIGE 300
Query: 244 LRHYNNQRGD-GKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+R + + G G+V + L DS G +IR+T ++ + F +V+ + V A
Sbjct: 301 IRTFEKKDGSPGRVGNLLLGDSTG-KIRLTLWDEKTN-FLDEVDFDETIEVLH-----AY 353
Query: 303 KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSY 362
N + +E+ L ++Q + + I ++ F I D+ E+ SV G VS
Sbjct: 354 SRENAFNQQVELNLGNRGIIQ---KSEKEIEYRE-KFTDIADIIPGESYSVQ---GKVSE 406
Query: 363 ISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
I R++GTE L L+D +G S+ LTLWG
Sbjct: 407 IGELREFEREDGTENVVANLQLKDETG-SIRLTLWG 441
>gi|448664770|ref|ZP_21684408.1| replication factor A [Haloarcula amylolytica JCM 13557]
gi|445774357|gb|EMA25378.1| replication factor A [Haloarcula amylolytica JCM 13557]
Length = 488
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 18/184 (9%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
I AL T++ V +R ++ G +G+V + L D G IRVT ++ AD+
Sbjct: 165 IDALTMGQSDVTLRGLVLDTDTIRTFDRDDGSEGRVSNLTLGDE-TGRIRVTLWDDRADR 223
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
+++AG + G ++ + LE+ + V +D A P
Sbjct: 224 -AEELDAGAAVEIIDGYVRERDGS-------LELHVGDQGAVDEVEDDVAFEPDAD---- 271
Query: 341 PINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNF 400
PI +VE E VD+ GVV P + R +G+E Q R + ++D +G + + LWG+
Sbjct: 272 PIAEVELEET---VDIAGVVRSADPKRTFDRDDGSEGQVRNVRIQDATG-DIRVALWGDK 327
Query: 401 CNDD 404
+ D
Sbjct: 328 ADKD 331
>gi|413916178|gb|AFW56110.1| hypothetical protein ZEAMMB73_034381 [Zea mays]
Length = 446
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 25/186 (13%)
Query: 231 KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA----DQFYHQVE 286
K++I ARV K + R HF L D +G +I + D H+
Sbjct: 206 KYSIVARVEVKFPIEPRFRDRQ-----HFVLSDINGAKIEAITYMYETVKHFDNLLHEKH 260
Query: 287 AGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRP----- 341
K++ V + SL P + NF HL+ +E+ LD ++V+ ++P Q F
Sbjct: 261 VYKMHNV-KFSLHPGEFNFRHLNGPMELCLDQQTIVE-----PYTVPIQMAPFPKQILLN 314
Query: 342 INDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFC 401
+ D+ + N ++VD++ VV ++ M R + + D G + +WG+
Sbjct: 315 LADIAELPNRTLVDIMAVVVHLDTIHRTM-----WGPFRKIVIMDARGYLHIIKVWGDLL 369
Query: 402 NDDGLR 407
N + LR
Sbjct: 370 NKNALR 375
>gi|294876753|ref|XP_002767785.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239869630|gb|EER00503.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 143
Score = 48.5 bits (114), Expect = 0.014, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 7/126 (5%)
Query: 198 MQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVF 257
++SP + R V ++ P I+ L W ++ RV +K E+ + G++F
Sbjct: 13 LKSP--HPRRASVRRTSQPYSRTLISNLRVGSTDWCLRGRVVSKSEIFGIST----GELF 66
Query: 258 HFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLD 317
H + D D +++ F+ A F+ ++ G IY G + A FN D+EI D
Sbjct: 67 HAHISDEDSNTVKLLFFDEAAHIFHDSIQIGAIYYFRNGKVLRAHSKFNK-EADVEIKFD 125
Query: 318 MTSMVQ 323
+++++
Sbjct: 126 TSAVIE 131
>gi|157876786|ref|XP_001686735.1| universal minicircle sequence binding protein [Leishmania major
strain Friedlin]
gi|68129810|emb|CAJ09116.1| universal minicircle sequence binding protein [Leishmania major
strain Friedlin]
Length = 175
Score = 48.5 bits (114), Expect = 0.014, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 738 SAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFS------SGAGIATSSECYKC 791
+AA +SC +CG GH S +CPS P G + S + AG T S CY C
Sbjct: 82 AAATRSCYNCGETGHMSRDCPS-ERKPKSCYNCGSTDHLSRECTNEAKAGADTRS-CYNC 139
Query: 792 HKTGHWARDCPS 803
TGH +RDCP+
Sbjct: 140 GGTGHLSRDCPN 151
Score = 41.2 bits (95), Expect = 2.6, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 22/61 (36%)
Query: 743 SCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCP 802
+C CG GH S +CP A + CY C +TGH +RDCP
Sbjct: 65 TCYKCGEAGHMSRSCPRA----------------------AATRSCYNCGETGHMSRDCP 102
Query: 803 S 803
S
Sbjct: 103 S 103
>gi|257053314|ref|YP_003131147.1| replication factor A [Halorhabdus utahensis DSM 12940]
gi|256692077|gb|ACV12414.1| nucleic acid binding OB-fold tRNA/helicase-type [Halorhabdus
utahensis DSM 12940]
Length = 486
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 17/184 (9%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
I AL T++ V +R + G +G+V + + D G +RVT ++ AD+
Sbjct: 165 IDALTMGQSNVTVEGVVLDTEPVRTFERDDGSEGRVANLSIGDE-TGRVRVTLWDDRADR 223
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
+++AG V G ++ DLE+ + + DDA +
Sbjct: 224 V-EEIDAGTTVEVVDGYVR-------ERDGDLEVHVGEEGAIDEL--DDADVEYAP-ETT 272
Query: 341 PINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNF 400
PI+DVE + VD+ GVV PT + R +G+E Q + + ++D + + + LWG
Sbjct: 273 PIDDVE---LDETVDIGGVVRSTDPTRTFDRDDGSEGQVKNIRIQDDT-DDIRVALWGEK 328
Query: 401 CNDD 404
+ D
Sbjct: 329 ADRD 332
>gi|448336089|ref|ZP_21525200.1| replication factor A [Natrinema pallidum DSM 3751]
gi|445630447|gb|ELY83712.1| replication factor A [Natrinema pallidum DSM 3751]
Length = 488
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 20/161 (12%)
Query: 244 LRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+R ++ G +GKV + L DS G +RVT ++ AD ++EAG V G +K
Sbjct: 186 VRTFDRDDGSEGKVSNLVLGDS-TGRVRVTLWDEQAD-LATELEAGTTVEVIDGYVKDRD 243
Query: 303 KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPIND-VEGMENNSVVDLIGVVS 361
+ LE+ + V+ E DA++ + P N +E +E + VVD+ GVV
Sbjct: 244 GS-------LELHVGNRGAVE---EIDATV-----EYVPENTPIEDVEIDHVVDIAGVVR 288
Query: 362 YISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCN 402
P + R +G+E Q R + ++D + + + LWG+ +
Sbjct: 289 SADPKRTFDRDDGSEGQVRNIRVQDAT-DDIRVALWGDKAD 328
Score = 43.5 bits (101), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 93/191 (48%), Gaps = 25/191 (13%)
Query: 210 VGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHY--NNQRGDGKVFHFDLLDSDGG 267
VG+SEV IA + P M + A+V + GE R + + + DG+V + ++ D + G
Sbjct: 48 VGESEVGG----IADIEPGMEEAKFVAKVLSIGEKRTFERDGEDEDGQVVNVEVTD-ETG 102
Query: 268 EIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE 327
+R ++ A+ ++E G++ ++ +P ++ F+ + EI +D + +
Sbjct: 103 SVRAAFWDDHAEAAIDELEEGQVLRIAG---RP-KEGFSGV----EISVD-----NVEPD 149
Query: 328 DDASIPRQQFHFRPINDVE-GMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRD 386
D I Q + D+ G+ N V+L+GV+ + R +G+E + L L D
Sbjct: 150 PDTEIDVQVSDTYTVEDLSLGLSN---VNLVGVLLDTDSVRTFDRDDGSEGKVSNLVLGD 206
Query: 387 MSGRSVELTLW 397
+GR V +TLW
Sbjct: 207 STGR-VRVTLW 216
>gi|76800811|ref|YP_325819.1| replication factor A [Natronomonas pharaonis DSM 2160]
gi|76556676|emb|CAI48248.1| replication protein A [Natronomonas pharaonis DSM 2160]
Length = 467
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 20/172 (11%)
Query: 233 TIKARVTAKGELRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIY 291
T++ V +R ++ G +G+V + L D G+IRVT ++ AD+ +EAG+
Sbjct: 176 TLRGVVLDTDAVRTFDRDDGSEGRVSNLTLGDE-TGKIRVTLWDEQADR-AEALEAGQSV 233
Query: 292 LVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRP-INDVEGMEN 350
+ G ++ + DLE+ S + E F P D++ +
Sbjct: 234 EIVDGYVRERE-------GDLELHAGSRSDIDELDE--------SVEFVPDATDIDSIAI 278
Query: 351 NSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCN 402
+ VD+ GVV P + R +G+E Q R + L+D +G + + LWG +
Sbjct: 279 DETVDIAGVVRSADPKRTFDRDDGSEGQVRNVRLQDNTG-DIRVALWGEKAD 329
>gi|448579408|ref|ZP_21644604.1| replication factor A [Haloferax larsenii JCM 13917]
gi|445723357|gb|ELZ75000.1| replication factor A [Haloferax larsenii JCM 13917]
Length = 489
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 30/227 (13%)
Query: 214 EVPSRIIPIAALNPY--------MGKWTIKARVTAKGELRHYNNQRG-DGKVFHFDLLDS 264
E P + + L+ Y + +K ++ G +R ++ G +G+V + + D+
Sbjct: 148 EDPDAEVDVKVLDTYRVEDLALGLSDVNLKGKILDVGTVRTFDRDDGSEGRVSNLSVGDA 207
Query: 265 DGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQL 324
G +RVT ++ AD +++AG+ V G ++ + LE+ + V++
Sbjct: 208 -TGRVRVTMWDERAD-LVEELDAGQSVEVVDGYVRERDGS-------LELHVGSRGAVEV 258
Query: 325 CYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHL 384
ED +P D+ +E VD+ G V + R +G+E Q R + +
Sbjct: 259 IDEDIEYVPET-------TDIGALELGQTVDIAGGVIESDSKRTFDRDDGSEGQVRNIRV 311
Query: 385 RDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFN 431
RD +G + + LWG + D + D V + +K G D
Sbjct: 312 RDDTG-DIRVALWGEKADTD----VDLADYVVITDVEIKDGWQDDLE 353
>gi|414877314|tpg|DAA54445.1| TPA: hypothetical protein ZEAMMB73_823790 [Zea mays]
Length = 277
Score = 48.5 bits (114), Expect = 0.016, Method: Composition-based stats.
Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 29/188 (15%)
Query: 231 KWTIKARVTAK--GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA----DQFYHQ 284
K++I ARV K E R + Q HF L D +G +I + D H+
Sbjct: 37 KYSIVARVEVKFPKEPRFRDRQ-------HFVLSDINGSKIEAITYMYETVKHFDNLLHE 89
Query: 285 VEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRP--- 341
K++ V + SL P + NF HL+ +E+ LD ++V+ ++P Q F
Sbjct: 90 KHVYKMHNV-KFSLHPGEFNFRHLNGPMELCLDQQTIVE-----PYTVPIQMAPFPKQIL 143
Query: 342 --INDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGN 399
+ D+ + N ++VD++ VV ++ M R + + D G + +WG+
Sbjct: 144 LNLADIAELPNRTLVDIMAVVVHLDTIQRTMWG-----PFRKIVIMDARGYLHIIKVWGD 198
Query: 400 FCNDDGLR 407
N + LR
Sbjct: 199 LLNKNALR 206
>gi|348687513|gb|EGZ27327.1| hypothetical protein PHYSODRAFT_376071 [Phytophthora sojae]
Length = 68
Score = 48.5 bits (114), Expect = 0.016, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 32/68 (47%)
Query: 232 WTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIY 291
W RV ++ +R Y N RG G++ + D+ G IR+T FN FY V G
Sbjct: 1 WAFVCRVLSRSPIREYTNLRGGGRLIEIYVGDAAGDTIRITLFNEAVTAFYDVVSPGSTC 60
Query: 292 LVSRGSLK 299
S G +K
Sbjct: 61 YFSAGRIK 68
>gi|413919338|gb|AFW59270.1| hypothetical protein ZEAMMB73_870626 [Zea mays]
Length = 351
Score = 48.1 bits (113), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 231 KWTIKARVTAKG--ELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA----DQFYHQ 284
K++I ARV K E R+ + Q HF L D G +I + +V + H+
Sbjct: 111 KYSIVARVEVKFPIEPRYRDRQ-------HFILSDIHGAKIEAITYVSVTVKHFNNLLHE 163
Query: 285 VEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPIND 344
++ V G L P + NF HL+ +E++ + ++V+ P + F ++D
Sbjct: 164 KHVYHMHNVKFG-LHPGEFNFRHLNGPMELYFNQQTIVEPYTVPIQMPPFPKHIFFNLDD 222
Query: 345 VEGMENNSVVDLIGVVSYISPTASLM----RKNGTETQKRTLHLRDMSGRSVELTLWGNF 400
+ + N ++VD++ +V ++ M RK + +LH+ + +WG+
Sbjct: 223 IAELPNRTLVDIMAIVVHMDTIHRTMWGPFRKIVIMDARGSLHI---------IKVWGDL 273
Query: 401 CNDDGLR 407
N + LR
Sbjct: 274 LNKNALR 280
>gi|413921320|gb|AFW61252.1| hypothetical protein ZEAMMB73_336018 [Zea mays]
Length = 594
Score = 48.1 bits (113), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 78/385 (20%), Positives = 153/385 (39%), Gaps = 50/385 (12%)
Query: 285 VEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPIND 344
+E KIY +SR + A+ F +H D I +++ + + R +H P +
Sbjct: 95 IEENKIYEISRFRISSARLMFKPVHMDKMIHFTYHTIINASLDTPPAFSRYVYHLTPFDQ 154
Query: 345 VEG--MENNSVVDLIGVVSYISP--------------------------TASLMRKNGTE 376
+E +N +D++GV++ +S T +L++ N +
Sbjct: 155 LESYIQKNEYFLDVLGVITQVSALKPVGTHTQESSNVIKEIIIKDIKYETTTLIQHNFLQ 214
Query: 377 TQKRTLH--LRDMSGRSVELTLWGNFCNDDGLRLQHMCDS-GVFPILAVKAGRVS-DFNG 432
+ +H S ++ +TLW +L+++ D PI+ + G ++ +F G
Sbjct: 215 MFEFYIHHVTTICSDITMRVTLWAE--RARAFKLENVYDPLEQKPIVTLFVGCLAKNFQG 272
Query: 433 KVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRAD--IRKTVSQI 490
+ + + + PD EA + FE + K +S ++ L V + KT+ ++
Sbjct: 273 IYLNGGTACRWYFNPDIREAAPYYQRFESQ-KIKLHISSEQEQLYVTKETNVEHKTLHEL 331
Query: 491 KDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCD 550
+ K + + I + + AC R C + +G ++C C
Sbjct: 332 LELHPYAFPKQGYQCTATIIEVPTTSRWWFPAC--TKCGRACKPQ-----NGGYYCPYCK 384
Query: 551 QSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVV 610
RY L F D T + F A+ ++G S + + LK V + ++
Sbjct: 385 SEAY--ILRYKLTFMGSDGTATAQMFCFDTVAQHVVGRSCETV--LKQVTEAAPIPPDLA 440
Query: 611 RNATFTKYLFKLKVKEETFSD-EQR 634
+ + K+ F++ V +TFS EQR
Sbjct: 441 QIVSL-KFTFRVTVSNQTFSQREQR 464
>gi|302781270|ref|XP_002972409.1| hypothetical protein SELMODRAFT_412779 [Selaginella moellendorffii]
gi|300159876|gb|EFJ26495.1| hypothetical protein SELMODRAFT_412779 [Selaginella moellendorffii]
Length = 158
Score = 48.1 bits (113), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 517 NFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVT 576
+F Y AC ++ R C KKV + W C+ CD D L I D T W
Sbjct: 86 DFYYPACVKVVNGRQCGKKVTQASESMWQCNSCDT-----DSGDALHLCILDSTAHIWAV 140
Query: 577 AFQECAEEIMGM 588
AF + A EI+GM
Sbjct: 141 AFDDAANEIIGM 152
>gi|397611616|gb|EJK61407.1| hypothetical protein THAOC_18113 [Thalassiosira oceanica]
Length = 439
Score = 48.1 bits (113), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 25/125 (20%)
Query: 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSV 60
+P LQV+ + + +K RF++VLSDG+ G +A Q N LV SG+ + SV
Sbjct: 119 VPTLQVLQCRKIDNKAAGAD-----RFKLVLSDGTHFCMGTIARQLNPLVDSGVFKENSV 173
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
+++T F NV+ + I IV+ + S+ PG GNP S T
Sbjct: 174 IKVTNFIINVMSSGGKICIVLGAE------------------SAGPHPGRRIGNP-SCVT 214
Query: 120 GVSLQ 124
LQ
Sbjct: 215 KAGLQ 219
>gi|125562228|gb|EAZ07676.1| hypothetical protein OsI_29933 [Oryza sativa Indica Group]
Length = 446
Score = 48.1 bits (113), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 330 ASIPRQQFHFRPINDVEGMENNS--VVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDM 387
+SIP F F P + + S ++DLIGV+S++ P + + + R L +R
Sbjct: 35 SSIPNYGFEFCPFDQIPSKSGISKPLIDLIGVISHVGPYDYAGKTSS--KKNRKLKIRSK 92
Query: 388 SGRSVELTLWGNF--CNDDGLRLQHMCDSGVFPILAVKAGRVS-DFNGKVVGTIST-TQL 443
+ E+ LWG + D+ LQ D + ++A+ AG + + GK T S+ TQ+
Sbjct: 93 DEQEQEIVLWGEYGGSFDEAFVLQKSTDHKI--VVAILAGLTAGTYLGKTEATSSSATQI 150
Query: 444 FIEPDFPE 451
+ + D E
Sbjct: 151 YFDSDITE 158
>gi|448320473|ref|ZP_21509960.1| replication factor A [Natronococcus amylolyticus DSM 10524]
gi|445605938|gb|ELY59853.1| replication factor A [Natronococcus amylolyticus DSM 10524]
Length = 476
Score = 48.1 bits (113), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 18/162 (11%)
Query: 244 LRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+R ++ G +GKV + + DS G IRVT ++ A+Q + EAG V G ++
Sbjct: 186 IRTFDRDDGSEGKVANLVVGDS-TGRIRVTMWDERAEQVT-EFEAGDTLEVVDGYVRERD 243
Query: 303 KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSY 362
+ LE+ + ++ D +P PI DVE VD+ GVV
Sbjct: 244 GS-------LELHVGNRGALEAVDADVEYVPESV----PIEDVE---IGQTVDIAGVVRS 289
Query: 363 ISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDD 404
P + R +G+E Q R + ++D +G + + LWG+ + D
Sbjct: 290 ADPKRTFDRDDGSEGQVRNIRVQDATG-DIRVALWGSKADTD 330
>gi|405954050|gb|EKC21588.1| hypothetical protein CGI_10003680 [Crassostrea gigas]
Length = 241
Score = 48.1 bits (113), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 710 GAASGLLANQMGQYGNQYSGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSG 769
G + L+ N++ ++ + + P SC +CG GH S +CP+ + +
Sbjct: 70 GKHTSLILNKL----DEMNKTTQPKTTQGKKPGSCYTCGEPGHYSPDCPT------KENN 119
Query: 770 GGYANSFSSGAGIATSSECYKCHKTGHWARDCP 802
G + S+ +++ C+ C K GHW +DCP
Sbjct: 120 RGLTSQQSTNYSRPSNNNCFICKKEGHWMKDCP 152
>gi|218193864|gb|EEC76291.1| hypothetical protein OsI_13802 [Oryza sativa Indica Group]
Length = 384
Score = 48.1 bits (113), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 9/78 (11%)
Query: 728 SGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSE 787
S ++P+ +S+A C CG H + +CP+ S P GG +F+S ++
Sbjct: 292 SSGQIPSKRSSSA---CFKCGQENHWAKDCPNQSSDPYPDKGG---RTFTS---ASSPDA 342
Query: 788 CYKCHKTGHWARDCPSLN 805
C+KC K+GHW+RDCP+ N
Sbjct: 343 CFKCGKSGHWSRDCPTAN 360
>gi|448444635|ref|ZP_21589925.1| replication factor A [Halorubrum saccharovorum DSM 1137]
gi|445686048|gb|ELZ38389.1| replication factor A [Halorubrum saccharovorum DSM 1137]
Length = 496
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 83/194 (42%), Gaps = 32/194 (16%)
Query: 244 LRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFN---AVADQFY--HQVEAGKIYLVSRGS 297
+R ++ G +G+V + + D G +RVT ++ +AD+F VE G Y+ R
Sbjct: 187 VRTFDRDDGSEGRVANLTVGDE-TGRVRVTLWDDKAGLADEFGPGEVVEVGDGYVRER-- 243
Query: 298 LKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLI 357
DLE+ + V+ ED +P DV +E VVD+
Sbjct: 244 -----------DGDLELHVGDRGTVERVDEDVEYVP-------ETTDVADVEIGEVVDIG 285
Query: 358 GVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVF 417
G V P + R +G+E Q R + ++D +G + + LWG+ + R + D VF
Sbjct: 286 GGVIETDPKRTFDRDDGSEGQVRNVRIKDDTG-EIRVALWGDKAD----REIDLADRVVF 340
Query: 418 PILAVKAGRVSDFN 431
+ ++ G D
Sbjct: 341 TDVEIQDGWQDDLE 354
Score = 45.8 bits (107), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 85/181 (46%), Gaps = 20/181 (11%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHY---NNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
IA + P M +VT+ G++R + +++ +G+V + D+ D+ G +RV ++ +A
Sbjct: 56 IADIEPGMNDVKFLGKVTSIGDVRTFERDDDEAEEGRVCNVDVADA-SGSVRVALWDEMA 114
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
Q+E G++ V + ++ ++ L S ++ ++DA + Q
Sbjct: 115 AAAEEQLEVGQVLRV----MGRPKEGYSGLE---------VSADKVEPDEDAEVDVQVLD 161
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
+ D+ S VDL+G V + R +G+E + L + D +GR V +TLW
Sbjct: 162 TYQVADL--SLGASDVDLVGQVLDTDSVRTFDRDDGSEGRVANLTVGDETGR-VRVTLWD 218
Query: 399 N 399
+
Sbjct: 219 D 219
>gi|115455777|ref|NP_001051489.1| Os03g0786500 [Oryza sativa Japonica Group]
gi|50355715|gb|AAT75240.1| putative DNA-binding protein [Oryza sativa Japonica Group]
gi|108711439|gb|ABF99234.1| GRF zinc finger family protein, expressed [Oryza sativa Japonica
Group]
gi|113549960|dbj|BAF13403.1| Os03g0786500 [Oryza sativa Japonica Group]
gi|215741242|dbj|BAG97737.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625927|gb|EEE60059.1| hypothetical protein OsJ_12863 [Oryza sativa Japonica Group]
Length = 384
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 9/79 (11%)
Query: 728 SGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSE 787
S ++P+ +S+A C CG H + +CP+ S P GG +F+S ++
Sbjct: 292 SSGQIPSKRSSSA---CFKCGQENHWAKDCPNQSSDPYPDKGG---RTFTS---ASSPDA 342
Query: 788 CYKCHKTGHWARDCPSLNA 806
C+KC K+GHW+RDCP+ N
Sbjct: 343 CFKCGKSGHWSRDCPTANC 361
>gi|448589662|ref|ZP_21649821.1| replication factor A [Haloferax elongans ATCC BAA-1513]
gi|445736090|gb|ELZ87638.1| replication factor A [Haloferax elongans ATCC BAA-1513]
Length = 486
Score = 47.8 bits (112), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 95/227 (41%), Gaps = 30/227 (13%)
Query: 214 EVPSRIIPIAALNPY--------MGKWTIKARVTAKGELRHYNNQRG-DGKVFHFDLLDS 264
E P + + L+ Y + +K ++ G +R ++ G +G+V + + D+
Sbjct: 148 EDPDAEVDVKVLDTYRVEDLALGLSDVNLKGKILDVGTVRTFDRDDGSEGRVSNLSVGDA 207
Query: 265 DGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQL 324
G +RVT ++ AD +++AG+ + G ++ + LE+ + V++
Sbjct: 208 -TGRVRVTMWDERAD-LVEELDAGQSVEIVDGYVRERDGS-------LELHVGSRGAVEV 258
Query: 325 CYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHL 384
ED +P D+ +E VD+ G V + R +G+E Q R + +
Sbjct: 259 IDEDIEYVPET-------TDIGALELGQTVDIAGGVIESDSKRTFDRDDGSEGQVRNIRV 311
Query: 385 RDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFN 431
RD +G + + LWG + D + D V + +K G D
Sbjct: 312 RDDTG-DIRVALWGEKADTD----VDLADYVVITDVEIKDGWQDDLE 353
>gi|125604050|gb|EAZ43375.1| hypothetical protein OsJ_27979 [Oryza sativa Japonica Group]
Length = 490
Score = 47.8 bits (112), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 330 ASIPRQQFHFRPINDVEGMENNS--VVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDM 387
+SIP F F P + + S ++DLIGV+S++ P + + + R L +R
Sbjct: 35 SSIPNYGFEFCPFDQIPSKSGISKPLIDLIGVISHVGPYDYAGKTSS--KKNRKLKIRSK 92
Query: 388 SGRSVELTLWGNF--CNDDGLRLQHMCDSGVFPILAVKAGRVS-DFNGKVVGTIST-TQL 443
+ E+ LWG + D+ LQ D + ++A+ AG + + GK T S+ TQ+
Sbjct: 93 DEQEQEIVLWGEYGGSFDEAFVLQKSTDHKI--VVAILAGLTAGTYLGKTEATSSSATQI 150
Query: 444 FIEPDFPE 451
+ + D E
Sbjct: 151 YFDSDITE 158
>gi|297838097|ref|XP_002886930.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297332771|gb|EFH63189.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 496
Score = 47.8 bits (112), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 86/433 (19%), Positives = 168/433 (38%), Gaps = 60/433 (13%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNN-QRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
I +NP + IK + LR + QR G L+D G I + +
Sbjct: 14 IDDINPIHDQNKIKVLI-----LRLWKAYQRDAGNTIEMVLVDEKGSRIHAIVEDKNIKK 68
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
F ++ G + ++ L ++ +I T+ V+ C + +P + +F
Sbjct: 69 FDSVLKEGDVVTLNPFKLIKYSGDYKSNSLSFKILFYRTTQVKPCDDFPKEVPEK--YFV 126
Query: 341 PINDV-EGMENNSV-VDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWG 398
DV G + V VD+IG + + P + + G T K + LRD + TLW
Sbjct: 127 EFGDVLNGSRDTRVFVDVIGQIVNVGPIEDI-KIRGKSTPKLDVELRDRGNVRLICTLWA 185
Query: 399 NFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGK--VVGTISTTQLFIEPDFPEAHRLK 456
+F +++ + + ++ +V ++ G + + T++ ++P +
Sbjct: 186 DFAKQ--VKVYTEANPAAV-VCVIRCAQVKEWKGNWTISNAMGATRVLLDPPGVFVDEFR 242
Query: 457 EWFEKEG------KNTQ-----SVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWIT 505
+G N++ +VSI L + + + +EG+ +T
Sbjct: 243 SGLPTDGVVLTNHDNSELFAGSTVSIRDQFLVKNHKRTVRDIVEALEEGMCVT----MVT 298
Query: 506 VSATIVYIKCDNFCYTACPIMIGDRPCNKKVM----NNGDG----RWHCDRCDQSVVECD 557
V + + + Y +C + CNK V N+GD ++C CD+ V
Sbjct: 299 VGSVE---RTSKWYYVSCKM------CNKSVEPYPENSGDDGKPPLYYCGVCDKDVSAVV 349
Query: 558 YRYILQFQIQDHTGL-TWVTAFQECAEEIMGMSAKDLYSLKYVDQND-----EKFGEVVR 611
+RY L ++ D T F ++ +A++LY+ V +ND + G +V
Sbjct: 350 FRYRLVLEVSDATNYKARFLLFDAMGSTLLRRTAQELYNA--VSENDPSILPSEIGALVG 407
Query: 612 NATFTKYLFKLKV 624
++LFK+ +
Sbjct: 408 R----RFLFKVSI 416
>gi|448680564|ref|ZP_21690881.1| replication factor A [Haloarcula argentinensis DSM 12282]
gi|445769008|gb|EMA20085.1| replication factor A [Haloarcula argentinensis DSM 12282]
Length = 488
Score = 47.8 bits (112), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 18/184 (9%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
I AL T++ V +R ++ G +G+V + L D G IRVT ++ AD+
Sbjct: 165 IDALTMGQSDVTLRGLVLDTDSIRTFDRDDGSEGRVSNLTLGDE-TGRIRVTLWDDRADR 223
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
+++AG V G ++ + LE+ + V +D A P
Sbjct: 224 -AEELDAGAAVEVIDGYVRERDGS-------LELHVGDQGAVDEVEDDVAFEP----DAD 271
Query: 341 PINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNF 400
PI +VE E D+ GVV P + R +G+E Q R + ++D +G + + LWG+
Sbjct: 272 PIAEVELEET---ADIAGVVRSADPKRTFDRDDGSEGQVRNVRIQDATG-DIRVALWGDK 327
Query: 401 CNDD 404
+ D
Sbjct: 328 ADKD 331
>gi|359493963|ref|XP_003634702.1| PREDICTED: replication factor A protein 1-like [Vitis vinifera]
gi|302143225|emb|CBI20520.3| unnamed protein product [Vitis vinifera]
Length = 75
Score = 47.8 bits (112), Expect = 0.025, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 546 CDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEK 605
C+ C ++ EC RYI+ ++ D +G W++ F E AE I G SA +L LK + +
Sbjct: 11 CEGCQKNDDECSLRYIMVVKVSDASGEAWLSLFNEQAERIFGYSADELDKLKSQEGEENL 70
Query: 606 FGE 608
F +
Sbjct: 71 FQQ 73
>gi|448735070|ref|ZP_21717288.1| replication factor A [Halococcus salifodinae DSM 8989]
gi|445798939|gb|EMA49324.1| replication factor A [Halococcus salifodinae DSM 8989]
Length = 483
Score = 47.8 bits (112), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 103/246 (41%), Gaps = 37/246 (15%)
Query: 181 FSRPYASNYARTPQAPYMQS-PSMYANRGLVGKSEVPSRIIP----------IAALNPYM 229
+ YA A P+ + ++ G + E + +I +A + P M
Sbjct: 4 IAEIYADLDADVPEGEFREAVEEKVEEMGGLADEETAAMLIAHEVADGEVEGVADVEPGM 63
Query: 230 GKWTIKARVTAKGELRHY--NNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEA 287
+ A+VT+ GELR + + + DG+V + ++ D + G IRV ++ A ++E
Sbjct: 64 EEAKFVAKVTSVGELRTFERDEEDEDGQVINVEVAD-ETGRIRVAFWDEQATGAAEELET 122
Query: 288 GKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEG 347
G + V+ +P + +N +E+ D + + + ++G
Sbjct: 123 GAVLRVAG---RPREG-----YNGIEVSADRVEPADVEVD---------VDLDAADTIDG 165
Query: 348 ME-NNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGL 406
+ S VDL G++ + R +G+E + L L D +GR+ +TLW +D
Sbjct: 166 LSLGQSDVDLTGLILDTDTVRTFDRDDGSEGRVANLTLGDETGRT-RVTLW----DDQAE 220
Query: 407 RLQHMC 412
R++ +
Sbjct: 221 RVEELA 226
Score = 42.7 bits (99), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 81/164 (49%), Gaps = 22/164 (13%)
Query: 244 LRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+R ++ G +G+V + L D + G RVT ++ A++ ++ AG ++ G ++
Sbjct: 185 VRTFDRDDGSEGRVANLTLGD-ETGRTRVTLWDDQAERV-EELAAGTTIELTDGYVR--- 239
Query: 303 KNFNHLHNDLEIFL-DMTSMVQLCYEDDASIPRQQFHFRP-INDVEGMENNSVVDLIGVV 360
+ DLE+ + D + ++ D ++ + P +EG+E ++ VD+ GV+
Sbjct: 240 ----ERNGDLELHVGDRGGLTEV----DTTV-----EYTPETTSIEGLEIDTTVDIGGVI 286
Query: 361 SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDD 404
P + R +G+E Q + + ++D +G + + LWG + D
Sbjct: 287 RSTDPKRTFDRDDGSEGQVKNIRVQDETG-DIRVALWGEKADRD 329
>gi|413941935|gb|AFW74584.1| hypothetical protein ZEAMMB73_338699 [Zea mays]
Length = 537
Score = 47.8 bits (112), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 85/184 (46%), Gaps = 21/184 (11%)
Query: 231 KWTIKARVTAKG--ELRHYNNQRGDGKVFHFDLLDSDGGEIR--VTCFNAVA--DQFYHQ 284
K++I ARV K E R+ + Q H+ L D +G +I VT + V + H+
Sbjct: 149 KYSIVARVEVKFPIEPRYRDRQ-------HYILSDINGAKIEAIVTRYEIVKYFNSLLHE 201
Query: 285 VEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH-FRPIN 343
K++ V G L P NF HL+ +E++ ++V+ Y +P H F ++
Sbjct: 202 KHVYKMHNVWFG-LNPGAFNFRHLNGTMELYFTQQTVVE-PYTVPVQMPPFPKHIFLNLD 259
Query: 344 DVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCND 403
D+ + N ++VD++ +V ++ M GT R + + D + +WG+ N
Sbjct: 260 DIAELPNRTLVDIMAIVVHLDTIHRTMW--GT---FRKIVIMDARWSLHTIKVWGDLLNK 314
Query: 404 DGLR 407
+ LR
Sbjct: 315 NALR 318
>gi|413946437|gb|AFW79086.1| hypothetical protein ZEAMMB73_648496 [Zea mays]
Length = 277
Score = 47.8 bits (112), Expect = 0.028, Method: Composition-based stats.
Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 29/188 (15%)
Query: 231 KWTIKARVTAKG--ELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA----DQFYHQ 284
K++I ARV K E R + Q HF L D +G +I + D H+
Sbjct: 37 KYSIVARVEVKFPIEPRFRDRQ-------HFVLSDINGAKIEAITYMYETVKHFDNLLHE 89
Query: 285 VEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRP--- 341
K++ V + SL P + NF HL+ +E+ LD ++V+ ++P Q F
Sbjct: 90 KHVYKMHNV-KFSLHPGEFNFRHLNGPMELCLDQQTIVE-----PYTVPIQMAPFPKQIL 143
Query: 342 --INDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGN 399
+ D+ + N ++VD++ VV ++ M R + + D G + +WG+
Sbjct: 144 LNLADIAELPNRTLVDIMAVVVHLDTIHRTMWG-----PFRKIVIMDARGYLHIIKVWGD 198
Query: 400 FCNDDGLR 407
N + LR
Sbjct: 199 LLNKNALR 206
>gi|413933866|gb|AFW68417.1| hypothetical protein ZEAMMB73_453988 [Zea mays]
Length = 277
Score = 47.8 bits (112), Expect = 0.028, Method: Composition-based stats.
Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 29/188 (15%)
Query: 231 KWTIKARVTAKG--ELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA----DQFYHQ 284
K++I ARV K E R + Q HF L D +G +I + D H+
Sbjct: 37 KYSIVARVEVKFPIEPRFRDRQ-------HFVLSDINGAKIEAITYMYETVKHFDNLLHE 89
Query: 285 VEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRP--- 341
K++ V + SL P + NF HL+ +E+ LD ++V+ ++P Q F
Sbjct: 90 KHVYKMHNV-KFSLHPGEFNFRHLNGPMELCLDQQTIVE-----PYTVPIQMAPFPKQIL 143
Query: 342 --INDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGN 399
+ D+ + N ++VD++ VV ++ M R + + D G + +WG+
Sbjct: 144 LNLADIAELPNRTLVDIMAVVVHLDTIHRTMWG-----PFRKIVIMDARGYLHIIKVWGD 198
Query: 400 FCNDDGLR 407
N + LR
Sbjct: 199 LLNKNALR 206
>gi|413924402|gb|AFW64334.1| hypothetical protein ZEAMMB73_790128 [Zea mays]
Length = 283
Score = 47.8 bits (112), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 27/187 (14%)
Query: 231 KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA----DQFYHQVE 286
K++I ARV K + R HF L D +G +I + D H+
Sbjct: 40 KYSIVARVEVKFPIEPRFRDRQ-----HFVLSDINGAKIEAITYMYETVKHFDNLLHEKH 94
Query: 287 AGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQ--LCYEDDASIPRQQFHFRPIND 344
K++ V + SL P + NF HL+ +E+ L+ ++V+ S P+Q F + D
Sbjct: 95 VYKMHNV-KFSLHPGEFNFRHLNGPMELCLNQQTIVEPYTFPIQMVSFPKQI--FLNLAD 151
Query: 345 VEGMENNSVVDLIGVVSYISPTASLM----RKNGTETQKRTLHLRDMSGRSVELTLWGNF 400
+ + N ++VD++ +V ++ M RK + +LH+ + +WG+
Sbjct: 152 IAELPNRTLVDIMAIVVHLDTIHRTMWGPFRKIVIMDARGSLHI---------IKVWGDL 202
Query: 401 CNDDGLR 407
N + LR
Sbjct: 203 LNKNALR 209
>gi|413942292|gb|AFW74941.1| hypothetical protein ZEAMMB73_054394 [Zea mays]
Length = 242
Score = 47.8 bits (112), Expect = 0.028, Method: Composition-based stats.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 19/183 (10%)
Query: 231 KWTIKARVTAK--GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA----DQFYHQ 284
K++I ARV K E R + Q HF D +G +I + D H+
Sbjct: 25 KYSIVARVEVKFPKEPRFRDRQ-------HFIFYDINGAKIEAITYMYETVKHFDNLLHE 77
Query: 285 VEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPIND 344
K++ V + SL P + NF HL+ +E+ LD ++V+ +P + + D
Sbjct: 78 KHVYKMHNV-KFSLHPGEFNFRHLNGPMELCLDQQTIVEPYTVPIQMVPFPKQILLNLAD 136
Query: 345 VEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDD 404
+ + N ++VD++ +V ++ M R + + D G + +WG+ N +
Sbjct: 137 ITELPNRTLVDIMAIVVHLDTIHRTMWG-----PFRKIVIMDARGYLHIIKVWGDLLNKN 191
Query: 405 GLR 407
LR
Sbjct: 192 ALR 194
>gi|413942291|gb|AFW74940.1| hypothetical protein ZEAMMB73_054394 [Zea mays]
Length = 268
Score = 47.8 bits (112), Expect = 0.028, Method: Composition-based stats.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 19/183 (10%)
Query: 231 KWTIKARVTAK--GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA----DQFYHQ 284
K++I ARV K E R + Q HF D +G +I + D H+
Sbjct: 25 KYSIVARVEVKFPKEPRFRDRQ-------HFIFYDINGAKIEAITYMYETVKHFDNLLHE 77
Query: 285 VEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPIND 344
K++ V + SL P + NF HL+ +E+ LD ++V+ +P + + D
Sbjct: 78 KHVYKMHNV-KFSLHPGEFNFRHLNGPMELCLDQQTIVEPYTVPIQMVPFPKQILLNLAD 136
Query: 345 VEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDD 404
+ + N ++VD++ +V ++ M R + + D G + +WG+ N +
Sbjct: 137 ITELPNRTLVDIMAIVVHLDTIHRTMWG-----PFRKIVIMDARGYLHIIKVWGDLLNKN 191
Query: 405 GLR 407
LR
Sbjct: 192 ALR 194
>gi|108862781|gb|ABA99343.2| hypothetical protein LOC_Os12g35400 [Oryza sativa Japonica Group]
Length = 735
Score = 47.4 bits (111), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 62/132 (46%), Gaps = 5/132 (3%)
Query: 244 LRHYNNQRGDGKVFHFDLL--DSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPA 301
L + + + + FH DLL D+ G I F + +++ + GK+Y + ++K
Sbjct: 317 LWDFCDAKDESNFFHKDLLLLDAKGNSIHAHIFPPLTEKYKPLLTEGKVYYLHSYTVKYG 376
Query: 302 QKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENN--SVVDLIGV 359
+ + + N++ I + ++ C A P + NDV + N VD++GV
Sbjct: 377 NRLYRPVPNEMMILFTTWTEIEECIGGPAGFPTIVYSLTSYNDVPNLVGNVDRFVDVVGV 436
Query: 360 VSYISPTASLMR 371
++ I+ T +++R
Sbjct: 437 ITEIT-TPTMLR 447
>gi|402220574|gb|EJU00645.1| hypothetical protein DACRYDRAFT_23052, partial [Dacryopinax sp.
DJM-731 SS1]
Length = 433
Score = 47.4 bits (111), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 28/178 (15%)
Query: 244 LRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA-DQFYHQVEAGKIYLVSRGSLKPAQ 302
L H N R +G V ++D DG ++ V F+ VA ++ + GK+ + P +
Sbjct: 219 LEHKNETR-EGFVLTLKIVDKDGNKMLVGSFDPVAIERVMAEAVVGKVRVC------PVK 271
Query: 303 KNFNHLHND---LEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGV 359
+ F D L++ L S D IP I+ + G+E S V+++GV
Sbjct: 272 EEF--FQPDILPLQMMLKYNSTFSFP-NSDFEIPAMPMQLTGIHLLRGLEFKSRVNVLGV 328
Query: 360 VSYISPTASLMRKN-----------GTETQKR---TLHLRDMSGRSVELTLWGNFCND 403
V ++ AS +K G +T +R + L D S V LTLW +D
Sbjct: 329 VLHVGQVASFSKKKRVAGEEAEGDEGDDTAERRRLEVQLVDRSLFVVRLTLWDQKADD 386
>gi|414888156|tpg|DAA64170.1| TPA: hypothetical protein ZEAMMB73_601434 [Zea mays]
Length = 265
Score = 47.4 bits (111), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 68/138 (49%), Gaps = 12/138 (8%)
Query: 231 KWTIKARVTAKGELR-HYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA----DQFYHQV 285
K++I ARV K + HY +++ HF L D +G +I + +V + H+
Sbjct: 73 KYSIVARVEVKFPIEPHYRDRQ------HFILSDINGAKIEAITYVSVTVKHFNNLLHEK 126
Query: 286 EAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDV 345
++ V G L P + NF HL+ +E++ + ++V+ P + F ++D+
Sbjct: 127 HVYNMHNVKFG-LHPGEFNFRHLNGPMELYFNQQTIVEPYTVPIQMPPFPKHIFFNLDDI 185
Query: 346 EGMENNSVVDLIGVVSYI 363
+ N ++VD++ +V ++
Sbjct: 186 AELPNRTLVDIMAIVVHM 203
>gi|84490268|ref|YP_448500.1| replication factor A [Methanosphaera stadtmanae DSM 3091]
gi|84373587|gb|ABC57857.1| predicted ssDNA-binding protein [Methanosphaera stadtmanae DSM
3091]
Length = 793
Score = 47.4 bits (111), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 52/266 (19%), Positives = 113/266 (42%), Gaps = 42/266 (15%)
Query: 331 SIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGR 390
+I + +++ R I+ +E E N+ + + + I+ + R +G + + R++++ D +G
Sbjct: 522 NIEQDRYNDRTISQLEENETNTKLRV--RILNINEINTFTRTDGRDGRVRSIYVADETG- 578
Query: 391 SVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFP 450
++++LW DD ++ S + ++ ++ N K+ +I
Sbjct: 579 EIQVSLW-----DDDTEIKFTKGSAII----IENPNITRQNTKLRLSIGNGSTIRAARQE 629
Query: 451 EAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATI 510
EA ++ E E K + K + I+ E I + TI
Sbjct: 630 EAEKMLSLTEIENK----------------LYVEKYIEDIE-------EDDQHIKIKGTI 666
Query: 511 VYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHT 570
I + YT CP CN + + +G + C+ C + + + +Y I+ +QD T
Sbjct: 667 SEINSEKIIYTMCP------NCNIGITQDENG-YICNECGEKIEKPNYLMIISTTLQDET 719
Query: 571 GLTWVTAFQECAEEIMGMSAKDLYSL 596
G T F++ AEE++ + + + ++
Sbjct: 720 GTVQATFFRKDAEELISTTTEKVVAI 745
>gi|402220342|gb|EJU00414.1| nucleic acid-binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 209
Score = 47.4 bits (111), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 10/143 (6%)
Query: 486 TVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDG--- 542
T++++ EGL + + + TIV K ++ Y C + CN+KV ++ G
Sbjct: 20 TIAKVYAEGLNAQPRAQTFCIEGTIVIDKANSVTYLGCAM----PHCNRKVHDSDIGTNM 75
Query: 543 RWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQN 602
+ C C QS + +Y + FQI W TAF + ++G+ + + + D N
Sbjct: 76 HYLCPTCKQSFMMPMPKYCICFQIVSGNDHKWATAFNTASTALLGVPVATMMDI-FADNN 134
Query: 603 DEK--FGEVVRNATFTKYLFKLK 623
K ++ A + KYL ++
Sbjct: 135 MYKPVHSYNLQQAMYGKYLMTIQ 157
>gi|336253183|ref|YP_004596290.1| OB-fold tRNA/helicase-type nucleic acid binding protein [Halopiger
xanaduensis SH-6]
gi|335337172|gb|AEH36411.1| nucleic acid binding OB-fold tRNA/helicase-type [Halopiger
xanaduensis SH-6]
Length = 495
Score = 47.4 bits (111), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 18/162 (11%)
Query: 244 LRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+R ++ G +GKV + + D + G +RVT ++ AD ++E G V G +K
Sbjct: 191 VRTFDRDDGSEGKVSNLAVGD-ETGRVRVTLWDEQAD-LATELEPGTTVEVVDGYVKERD 248
Query: 303 KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSY 362
N LE+ + V+ ED +P PI +VE VDL GVV
Sbjct: 249 GN-------LELHVGNRGTVEEVDEDVEYVPEST----PIEEVE---IGQTVDLAGVVRS 294
Query: 363 ISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDD 404
P + R +G+E Q R + ++D + + + LWG + D
Sbjct: 295 ADPKRTFDRDDGSEGQVRNIRVQDAT-DDIRVALWGEKADID 335
Score = 39.3 bits (90), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 94/191 (49%), Gaps = 25/191 (13%)
Query: 210 VGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHY--NNQRGDGKVFHFDLLDSDGG 267
VG+SEV +A + P M + A+V + GE+R + + + DG+V + ++ D + G
Sbjct: 53 VGESEVGG----VADIEPGMEEAKFVAKVLSIGEVRTFERDGEDEDGRVVNVEVAD-ETG 107
Query: 268 EIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE 327
+R ++ A+ ++E G++ V +G +P ++ F+ + S+ ++ +
Sbjct: 108 SVRAAFWDEHAEAAIEELEEGQVLRV-KG--RP-KEGFSGVE---------VSVDEVEPD 154
Query: 328 DDASIPRQQFHFRPINDVE-GMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRD 386
D + Q + D+ G+ N V+L+GVV + R +G+E + L + D
Sbjct: 155 PDTEVDVQVSDTHTVEDLSLGLSN---VNLVGVVLDTDSVRTFDRDDGSEGKVSNLAVGD 211
Query: 387 MSGRSVELTLW 397
+GR V +TLW
Sbjct: 212 ETGR-VRVTLW 221
>gi|448417794|ref|ZP_21579599.1| replication factor A [Halosarcina pallida JCM 14848]
gi|445677367|gb|ELZ29869.1| replication factor A [Halosarcina pallida JCM 14848]
Length = 500
Score = 47.4 bits (111), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 25/181 (13%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHY--NNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
IA + P M +V + GELR + + + DG+V + ++ D + G IR++ ++A+A+
Sbjct: 56 IADIEPGMDDVKFLGKVMSVGELRTFERDGEDEDGRVVNVEVAD-ETGRIRISMWDAMAE 114
Query: 280 QFYHQVEAGKIYLVS---RGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
++E G++ ++ + + N + + D E +D+ + Q
Sbjct: 115 DVVEKLEVGQVLRIAGRPKDGYNGVEVNVDKVEPDSEAEIDVQT---------------Q 159
Query: 337 FHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTL 396
+R + G+ S V+L G V + R +G+E + L L D +GR + +TL
Sbjct: 160 DSYRVEDLSLGL---SDVNLKGRVLSTDSVRTFSRDDGSEGRVANLTLGDPTGR-IRVTL 215
Query: 397 W 397
W
Sbjct: 216 W 216
Score = 43.5 bits (101), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 84/199 (42%), Gaps = 22/199 (11%)
Query: 234 IKARVTAKGELRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYL 292
+K RV + +R ++ G +G+V + L D G IRVT ++ AD + +A
Sbjct: 176 LKGRVLSTDSVRTFSRDDGSEGRVANLTLGDP-TGRIRVTLWDEKAD-LTEEFDADVTVE 233
Query: 293 VSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNS 352
V G ++ + LE+ + V ED +P D+ +E +
Sbjct: 234 VVDGYVRERDGS-------LELHVGNRGTVAELDEDVEYVPETA-------DIGSLELDQ 279
Query: 353 VVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMC 412
VD+ G V P + R +G+E Q R + ++D +G + + +WG + D +
Sbjct: 280 TVDIAGGVIETDPKRTFDRDDGSEGQVRNVRVKDDTG-DIRVAMWGEKADAD----IDLA 334
Query: 413 DSGVFPILAVKAGRVSDFN 431
D VF + ++ G D
Sbjct: 335 DYVVFTDVEIQDGWQEDLE 353
>gi|448363794|ref|ZP_21552390.1| replication factor A [Natrialba asiatica DSM 12278]
gi|445645676|gb|ELY98676.1| replication factor A [Natrialba asiatica DSM 12278]
Length = 495
Score = 47.4 bits (111), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 23/195 (11%)
Query: 210 VGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHY--NNQRGDGKVFHFDLLDSDGG 267
+G+SEV IA + P M + A+V + GE R + + + DG+V + ++ D + G
Sbjct: 48 IGESEVGG----IADIEPGMEEAKFVAKVLSIGERRTFERDGEDEDGQVVNVEVAD-ETG 102
Query: 268 EIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE 327
+R ++ AD +++E G++ + +G K +++E LD VQ+
Sbjct: 103 SVRAAFWDEHADAAINELEEGQVLRI-KGRPKDGFSGVEVSVDEVEPDLDTDIDVQIS-- 159
Query: 328 DDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDM 387
D ++ +N L+G+V + R +G+E + L L D
Sbjct: 160 DTYTVESLSLGLSNVN------------LVGLVLDTDTVRTFDRDDGSEGKVSNLVLGDS 207
Query: 388 SGRSVELTLWGNFCN 402
+GR V +TLW + +
Sbjct: 208 TGR-VRVTLWDDQAD 221
Score = 46.6 bits (109), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 18/160 (11%)
Query: 244 LRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+R ++ G +GKV + L DS G +RVT ++ AD ++EA + V G ++
Sbjct: 186 VRTFDRDDGSEGKVSNLVLGDS-TGRVRVTLWDDQAD-LATELEADETVEVVDGYVRERD 243
Query: 303 KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSY 362
+ LE+ + V+ D +P PI D +E VDL GVV
Sbjct: 244 GS-------LELHVGNRGAVETVDADIEYVPEST----PIED---LEIGQTVDLAGVVRS 289
Query: 363 ISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCN 402
P + R +G+E Q + + ++D +G + + LWG +
Sbjct: 290 TDPKRTFDRDDGSEGQVKNVRVQDATG-DIRVALWGEKAD 328
>gi|414869930|tpg|DAA48487.1| TPA: hypothetical protein ZEAMMB73_818761 [Zea mays]
Length = 299
Score = 47.4 bits (111), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 86/188 (45%), Gaps = 29/188 (15%)
Query: 231 KWTIKARVTAKG--ELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFY----HQ 284
K++I ARV K E R+ + Q HF L D G +I + +V + + H+
Sbjct: 59 KYSIVARVEVKFPIEPRYRDKQ-------HFILSDIHGAKIEAITYVSVTVKHFSNLLHE 111
Query: 285 VEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH-FRPIN 343
I+ V G L P + NF HL+ +E++ + ++V+ Y +P H F ++
Sbjct: 112 KHVYNIHNVKFG-LHPGEFNFRHLNGPMELYFNQQTIVE-PYTVPIQMPPFPKHIFFNLD 169
Query: 344 DVEGMENNSVVDLIGVVSYISPTASLM----RKNGTETQKRTLHLRDMSGRSVELTLWGN 399
D+ + N ++V+++ +V ++ M RK + +LH+ + +WG+
Sbjct: 170 DIAELPNRTLVNIMAIVVHMDTIHRTMWGPFRKIVIMDARGSLHI---------IKVWGD 220
Query: 400 FCNDDGLR 407
N + LR
Sbjct: 221 LLNKNALR 228
>gi|402216670|gb|EJT96754.1| nucleic acid-binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 430
Score = 47.4 bits (111), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 84/396 (21%), Positives = 146/396 (36%), Gaps = 53/396 (13%)
Query: 269 IRVTCFNA-VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDL---EIFLDMTSMVQL 324
++V F V D G + + L+ Q + L N L E +D S ++
Sbjct: 1 MKVLTFEEEVIDGLLKNTAVGVVMRLESVRLQETQAKY--LWNGLLPIEAVVDHNSRIEF 58
Query: 325 CYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGT--------- 375
+D IP I+ + M+ + V++IGVV ++ ++ K
Sbjct: 59 PLQDHG-IPPLSLELTKISLLRAMKVGTEVNVIGVVLHVGEVEAMSEKKRVAGKSGDGES 117
Query: 376 ---------ETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGR 426
E +R + L D S V + LW + ++ IL +K
Sbjct: 118 ESEEEDPKGERMRREVQLVDDSAHVVRIALWKDRATSMAVKRG--------SILLLKKVV 169
Query: 427 VSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGR---ADI 483
++ G + T++ +P E LK W+ N Q+ S G DI
Sbjct: 170 IAAHGGISLNVHEKTKVDKDPKVAEGTSLKNWYNNLASNPQTFRHISSGYSAGSGLFTDI 229
Query: 484 RK-----TVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMN 538
T+ +++ LGT + D V I + N Y AC + CNK +
Sbjct: 230 EPRSSVLTIPEVQKSNLGTSSRVDTFNVEGRIQVVDW-NAVYEACR----NTHCNKSIEK 284
Query: 539 NG-DGRWHCDRCDQSVVECDYRYILQFQI-QDHTGLTWVTAFQECAEEIMGMSAKDLYSL 596
+ D H D D + C Y L+ I QD V F A++++ A ++ +
Sbjct: 285 SPCDIEGHEDMSDDNRRFC---YHLKLTIGQDRRRSIDVPVFTPLADKMLEEDATEV--V 339
Query: 597 KYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
K D ++ EV+ TK+ F ++ + + +E
Sbjct: 340 KKRDHTPGQYDEVLGALLKTKWRFTIQACTQLWKNE 375
>gi|224060351|ref|XP_002300156.1| predicted protein [Populus trichocarpa]
gi|222847414|gb|EEE84961.1| predicted protein [Populus trichocarpa]
Length = 370
Score = 47.0 bits (110), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 32/61 (52%), Gaps = 10/61 (16%)
Query: 743 SCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCP 802
SC CG GH + +C G S+ A + GAG +S CYKC K GHWARDC
Sbjct: 310 SCFKCGKEGHWAKDC-------GMSTSDSPA---TFGAGSGSSGTCYKCGKPGHWARDCT 359
Query: 803 S 803
S
Sbjct: 360 S 360
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 781 GIATSSECYKCHKTGHWARDCPSLNAAPPAYGSSGIGISAAGYR-GAP 827
G T S C+KC K GHWA+DC + PA +G G S Y+ G P
Sbjct: 304 GARTGSSCFKCGKEGHWAKDCGMSTSDSPATFGAGSGSSGTCYKCGKP 351
>gi|357472785|ref|XP_003606677.1| hypothetical protein MTR_4g064240 [Medicago truncatula]
gi|355507732|gb|AES88874.1| hypothetical protein MTR_4g064240 [Medicago truncatula]
Length = 138
Score = 47.0 bits (110), Expect = 0.040, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 29 MVLSDGSRSQQGML--ATQRNELVTSGLLQIGSVVRLTKFTCNVIQ--NRMIVIVMDLDV 84
+VL+DG+ + A LV SG L+IGS+V+L F+ + + +I+ ++DV
Sbjct: 3 VVLTDGAIREFAHFNPAVFVRHLVLSGRLKIGSIVKLNNFSVDEPMEFDSKRIIITEIDV 62
Query: 85 IIDKCDPIGKPVP 97
I+ +CD IG+P+P
Sbjct: 63 IVKECDQIGEPIP 75
>gi|381217965|gb|AFG17059.1| vasa [Urechis unicinctus]
Length = 773
Score = 47.0 bits (110), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 24/80 (30%)
Query: 743 SCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSE--------------- 787
+C CG GH S +CPS GGG A+ SSGA I +
Sbjct: 194 ACFKCGEEGHMSRDCPS--------GGGGGASRPSSGAPINSEIGGIGRNGGRCGGGKDP 245
Query: 788 -CYKCHKTGHWARDCPSLNA 806
C+KC + GH+AR+CP A
Sbjct: 246 GCHKCGELGHFARECPKAMA 265
>gi|330507268|ref|YP_004383696.1| radical SAM domain-containing protein [Methanosaeta concilii GP6]
gi|328928076|gb|AEB67878.1| radical SAM domain protein [Methanosaeta concilii GP6]
Length = 341
Score = 47.0 bits (110), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 21/158 (13%)
Query: 68 CNVIQNR--MIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVSLQH 125
C V +N+ M++ ++ ++I DPI K +P + PGS+ + + H
Sbjct: 41 CAVRENQGGMLMTLVYGNLIAANEDPIEK-----KPFFHFLPGSLAYSIATVGCNFRCLH 95
Query: 126 HNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPE-VGAGSGSFSNQSASFSNPRPEFSRP 184
N +SQLP +T LP NY PE V AG+ S QS +++ P
Sbjct: 96 CQNADISQLPHET----------GKLPGNYVPPEDVVAGAVSRGCQSVAYTYTEPTIFFE 145
Query: 185 YASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPI 222
YA + AR +A ++ +++ + G +G+ + +IIP+
Sbjct: 146 YAYDVARLARASKLR--NVFVSNGYIGQ-DAADKIIPL 180
>gi|321449556|gb|EFX61951.1| hypothetical protein DAPPUDRAFT_337759 [Daphnia pulex]
Length = 545
Score = 47.0 bits (110), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 36/168 (21%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQ-GMLATQRNELVTSGLLQIGSV 60
P+LQV+ K++ + +R+R+++SDG S G+LATQ N L+ + L+ ++
Sbjct: 27 PILQVLGFKIL-------EGDNNERYRILISDGKYSYAYGILATQLNHLIWNAQLENFTI 79
Query: 61 VRLTKFTCNVI-------QNRMIVIVMDLDVII---DKCDPIGKPVPAQRPSSNEQPGSV 110
+R+ KF N + + I+I++D++ I+ + + IG P + N+ G V
Sbjct: 80 IRVKKFVVNKVATEAAGKDEKKIMILLDVEPIVPGSEVGEKIGNP-----QTLNDNVGEV 134
Query: 111 TGN------PQSNATG---VSLQHHN---NTRVSQLP-GDTDAVPAAR 145
T P N +SLQ+H V Q P G++D V A +
Sbjct: 135 TEEAAAKPAPLGNICKTYWLSLQNHTMRAQCYVCQEPFGESDVVMAPK 182
>gi|18406831|ref|NP_564759.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|30696446|ref|NP_849832.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|2462758|gb|AAB71977.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|21593771|gb|AAM65738.1| RNA binding protein, putative [Arabidopsis thaliana]
gi|26983818|gb|AAN86161.1| putative glycine-rich RNA binding protein [Arabidopsis thaliana]
gi|62321068|dbj|BAD94150.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|332195593|gb|AEE33714.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332195594|gb|AEE33715.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 292
Score = 47.0 bits (110), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 769 GGGYANSFSSGAGIATSSECYKCHKTGHWARDCPS 803
GGGY S G T EC+KC + GHWARDCPS
Sbjct: 103 GGGY-----SSRGKGTEDECFKCRRPGHWARDCPS 132
>gi|448637993|ref|ZP_21676044.1| replication factor A [Haloarcula sinaiiensis ATCC 33800]
gi|448655003|ref|ZP_21681855.1| replication factor A [Haloarcula californiae ATCC 33799]
gi|445763879|gb|EMA15053.1| replication factor A [Haloarcula sinaiiensis ATCC 33800]
gi|445765452|gb|EMA16590.1| replication factor A [Haloarcula californiae ATCC 33799]
Length = 488
Score = 47.0 bits (110), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 18/184 (9%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
I AL T++ V +R ++ G +G+V + L D G IRVT ++ AD+
Sbjct: 165 IDALTMGQSDVTLRGLVLDTDSIRTFDRDDGSEGRVSNLTLGDE-TGRIRVTLWDDRADR 223
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
+++AG + G ++ + LE+ + V +D A P
Sbjct: 224 -ADELDAGAAVEIIDGYVRERDGS-------LELHVGDQGAVDEVEDDVAFEP----DAD 271
Query: 341 PINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNF 400
PI +VE E D+ GVV P + R +G+E Q R + ++D +G + + LWG+
Sbjct: 272 PIAEVELEET---ADIAGVVRSADPKRTFDRDDGSEGQVRNVRIQDATG-DIRVALWGDK 327
Query: 401 CNDD 404
+ D
Sbjct: 328 ADKD 331
>gi|413926629|gb|AFW66561.1| hypothetical protein ZEAMMB73_966381 [Zea mays]
gi|414590868|tpg|DAA41439.1| TPA: hypothetical protein ZEAMMB73_922043 [Zea mays]
Length = 299
Score = 47.0 bits (110), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 231 KWTIKARVTAKG--ELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFY----HQ 284
K++I ARV K E R+ + Q HF L D G +I + +V + + H+
Sbjct: 59 KYSIVARVEVKFPIEPRYRDRQ-------HFILSDIHGAKIEAITYVSVTVKHFNNLLHE 111
Query: 285 VEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPIND 344
++ V G L P NF HL+ +E++ + ++V+ P + F ++D
Sbjct: 112 KHVYNMHNVKFG-LHPGPFNFRHLNGPMELYFNQQTIVEPYTVPIQMPPFPKHIFFNLDD 170
Query: 345 VEGMENNSVVDLIGVVSYISPTASLM----RKNGTETQKRTLHLRDMSGRSVELTLWGNF 400
+ + N ++VD++ +V ++ M RK + +LH+ + +WG+
Sbjct: 171 IAELPNRTLVDIMAIVVHMDTIHRTMWGPFRKIVIMDARGSLHI---------IKVWGDL 221
Query: 401 CNDDGLR 407
N + LR
Sbjct: 222 LNKNALR 228
>gi|297724803|ref|NP_001174765.1| Os06g0329200 [Oryza sativa Japonica Group]
gi|255677008|dbj|BAH93493.1| Os06g0329200 [Oryza sativa Japonica Group]
Length = 225
Score = 47.0 bits (110), Expect = 0.043, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Query: 234 IKARVTAKGELRHYNNQRGDGKVFHFDL--LDSDGGEIRVTCFNAVADQFYHQVEAGKIY 291
IK R++ + N++ K++H +L LD G I V + ++ ++F ++ GK+Y
Sbjct: 81 IKTRLSRLWDFHDINDEE---KIYHTELVLLDETGASIHVQIYPSLRNKFKDLLQQGKVY 137
Query: 292 LVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGM 348
+ S++ A + + + N L I + ++ C E + P F P DV +
Sbjct: 138 YIDSFSVRYANRTYRPVANPLMISFTKWTTLEECIEIPDNFPSITFSLTPFQDVPSL 194
>gi|414877177|tpg|DAA54308.1| TPA: hypothetical protein ZEAMMB73_716739 [Zea mays]
Length = 299
Score = 47.0 bits (110), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 231 KWTIKARVTAKG--ELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFY----HQ 284
K++I ARV K E R+ + Q HF L D G +I + +V + + H+
Sbjct: 59 KYSIVARVEVKFPIEPRYRDRQ-------HFILSDIHGAKIEAITYVSVTVKHFNNLLHE 111
Query: 285 VEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPIND 344
++ V G L P NF HL+ +E++ + ++V+ P + F ++D
Sbjct: 112 KHVYNMHNVKFG-LHPGPFNFRHLNGPMELYFNQQTIVEPYTVPIQMPPFPKHIFFNLDD 170
Query: 345 VEGMENNSVVDLIGVVSYISPTASLM----RKNGTETQKRTLHLRDMSGRSVELTLWGNF 400
+ + N ++VD++ +V ++ M RK + +LH+ + +WG+
Sbjct: 171 IAELPNRTLVDIMAIVVHMDTIHRTMWGPFRKIVIMDARGSLHI---------IKVWGDL 221
Query: 401 CNDDGLR 407
N + LR
Sbjct: 222 LNKNALR 228
>gi|401420034|ref|XP_003874506.1| universal minicircle sequence binding protein,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322490742|emb|CBZ26006.1| universal minicircle sequence binding protein,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 115
Score = 47.0 bits (110), Expect = 0.043, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 738 SAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFS------SGAGIATSSECYKC 791
+AA +SC +CG GH S +CPS P G S + AG T S CY C
Sbjct: 22 AAATRSCYNCGETGHLSRDCPS-ERKPKSCYNCGSTEHLSRECTNEAKAGADTRS-CYNC 79
Query: 792 HKTGHWARDCPS 803
TGH +RDCP+
Sbjct: 80 GGTGHMSRDCPN 91
Score = 40.4 bits (93), Expect = 4.3, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 22/61 (36%)
Query: 743 SCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCP 802
+C CG GH S +CP A + CY C +TGH +RDCP
Sbjct: 5 TCYKCGEAGHMSRSCPRA----------------------AATRSCYNCGETGHLSRDCP 42
Query: 803 S 803
S
Sbjct: 43 S 43
>gi|15229170|ref|NP_189872.1| CCHC-type zinc knuckle protein [Arabidopsis thaliana]
gi|7529257|emb|CAB86673.1| putative protein [Arabidopsis thaliana]
gi|17529084|gb|AAL38752.1| unknown protein [Arabidopsis thaliana]
gi|22136980|gb|AAM91719.1| unknown protein [Arabidopsis thaliana]
gi|332644235|gb|AEE77756.1| CCHC-type zinc knuckle protein [Arabidopsis thaliana]
Length = 372
Score = 47.0 bits (110), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 37/69 (53%), Gaps = 12/69 (17%)
Query: 737 TSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSS--ECYKCHKT 794
+S++ C CG GH S +C GQSS F SG +TSS +CYKC K
Sbjct: 299 SSSSSGECYKCGKQGHWSRDCT------GQSSN----QQFQSGQAKSTSSTGDCYKCGKA 348
Query: 795 GHWARDCPS 803
GHW+RDC S
Sbjct: 349 GHWSRDCTS 357
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 733 PAAGTSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCH 792
P TSAA C CG GH S +C + SG + G +S SSG ECYKC
Sbjct: 260 PVKSTSAA-GDCFKCGKPGHWSRDC-TAQSGNPKYEPGQMKSSSSSG-------ECYKCG 310
Query: 793 KTGHWARDC 801
K GHW+RDC
Sbjct: 311 KQGHWSRDC 319
>gi|55378982|ref|YP_136832.1| replication factor A [Haloarcula marismortui ATCC 43049]
gi|55231707|gb|AAV47126.1| replication A related protein [Haloarcula marismortui ATCC 43049]
Length = 488
Score = 47.0 bits (110), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 18/184 (9%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
I AL T++ V +R ++ G +G+V + L D G IRVT ++ AD+
Sbjct: 165 IDALTMGQSDVTLRGLVLDTDSIRTFDRDDGSEGRVSNLTLGDE-TGRIRVTLWDDRADR 223
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
+++AG + G ++ + LE+ + V +D A P
Sbjct: 224 -ADELDAGAAVEIIDGYVRERDGS-------LELHVGDQGAVDEVEDDVAFEP----DAD 271
Query: 341 PINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNF 400
PI +VE E D+ GVV P + R +G+E Q R + ++D +G + + LWG+
Sbjct: 272 PIAEVELEET---ADIAGVVRSADPKRTFDRDDGSEGQVRNVRIQDATG-DIRVALWGDK 327
Query: 401 CNDD 404
+ D
Sbjct: 328 ADKD 331
>gi|448356409|ref|ZP_21545142.1| replication factor A [Natrialba chahannaoensis JCM 10990]
gi|445653442|gb|ELZ06313.1| replication factor A [Natrialba chahannaoensis JCM 10990]
Length = 490
Score = 47.0 bits (110), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 18/166 (10%)
Query: 238 VTAKGELRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG 296
V G +R ++ G +GKV + L DS G +RVT ++ AD ++E G V G
Sbjct: 180 VLDTGTVRTFDRDDGSEGKVSNLVLGDS-TGRVRVTLWDEQAD-LATEIETGTTVEVVDG 237
Query: 297 SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDL 356
+K + LE+ + V+ E DA + + +E +E VDL
Sbjct: 238 YVKERDGS-------LELHVGNRGAVE---EVDAEVE----YVPESTSIESIEIGQEVDL 283
Query: 357 IGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCN 402
GVV P + R +G+E Q R + ++D +G + + LWG +
Sbjct: 284 AGVVRSADPKRTFDRDDGSEGQVRNIRVQDATG-DIRVALWGEKAD 328
>gi|414584906|tpg|DAA35477.1| TPA: hypothetical protein ZEAMMB73_493662 [Zea mays]
Length = 291
Score = 47.0 bits (110), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 29/188 (15%)
Query: 231 KWTIKARVTAKG--ELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA----DQFYHQ 284
K++I ARV K E R+ + Q HF L D +G +I + +V + H+
Sbjct: 59 KYSIVARVEVKFPIEPRYRDRQ-------HFILSDINGAKIEAITYVSVTVKHFNNLLHE 111
Query: 285 VEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH-FRPIN 343
++ V G L P NF HL+ +E++ + ++V+ Y +P H F ++
Sbjct: 112 KHVYNMHNVKFG-LHPGAFNFRHLNGPMELYFNQQTIVE-PYTVPIQMPPFPKHIFFNLD 169
Query: 344 DVEGMENNSVVDLIGVVSYISPTASLM----RKNGTETQKRTLHLRDMSGRSVELTLWGN 399
D+ + N ++VD++ +V ++ M RK + +LH+ + +WG+
Sbjct: 170 DIAELPNRTLVDIMAIVVHMDTIHRTMWGPFRKIVIMDARGSLHI---------IKVWGD 220
Query: 400 FCNDDGLR 407
N + LR
Sbjct: 221 LLNKNALR 228
>gi|297790618|ref|XP_002863194.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297309028|gb|EFH39453.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 508
Score = 47.0 bits (110), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 22/187 (11%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQF 281
+ LNP +W ++ +V R N+ G+ F L D +G +I+ + + V D+F
Sbjct: 10 VWRLNPSKYEWVVETKVLCSWTRRLENS----GRRLEFVLADREGNKIQCSLWGEVYDKF 65
Query: 282 YHQVEAGKIYLVSRGSLKPAQKNFNHLHN--DLEIFLDMTSMVQLCYEDDASIP----RQ 335
+ +G + + K+F +H D L M+ L IP Q
Sbjct: 66 VSVIVSGSWFRI---------KDFKVVHQTGDCRATLHRYKMILLKNTTIVKIPGIDNNQ 116
Query: 336 QFHFRPINDV--EGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVE 393
F F + ++ +V++IG + + P + + G T K + LRD +
Sbjct: 117 FFDFVDFGSILDRRYSDDFLVNVIGQIVNVGPIEDI-KIRGKSTPKLDVELRDRGNVRLI 175
Query: 394 LTLWGNF 400
TLW +F
Sbjct: 176 CTLWADF 182
>gi|413939632|gb|AFW74183.1| hypothetical protein ZEAMMB73_040811 [Zea mays]
Length = 402
Score = 47.0 bits (110), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 25/186 (13%)
Query: 231 KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA----DQFYHQVE 286
K++I ARV K + R HF L D +G +I + D H+
Sbjct: 162 KYSIVARVEVKFPIEPRFRDRQ-----HFVLSDINGAKIEAITYMYETVKHFDNLLHEKH 216
Query: 287 AGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRP----- 341
K++ V + SL P + NF HL+ +E+ LD ++V+ ++P Q F
Sbjct: 217 VYKMHNV-KFSLHPGEFNFRHLNGPMELCLDQQTIVE-----PYTVPIQMAPFPKQILLN 270
Query: 342 INDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFC 401
+ D+ + N ++VD++ VV ++ M R + + D G + +WG+
Sbjct: 271 LVDIAELPNRTLVDIMAVVVHLDTIHRTMWGPF-----RKIVIMDARGYLHIIKVWGDLL 325
Query: 402 NDDGLR 407
N + LR
Sbjct: 326 NKNALR 331
>gi|413924401|gb|AFW64333.1| hypothetical protein ZEAMMB73_790128 [Zea mays]
Length = 280
Score = 47.0 bits (110), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 29/188 (15%)
Query: 231 KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA----DQFYHQVE 286
K++I ARV K + R HF L D +G +I + D H+
Sbjct: 40 KYSIVARVEVKFPIEPRFRDRQ-----HFVLSDINGAKIEAITYMYETVKHFDNLLHEKH 94
Query: 287 AGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE---DDASIPRQQFHFRPIN 343
K++ V + SL P + NF HL+ +E+ L+ ++V+ Y S P+Q F +
Sbjct: 95 VYKMHNV-KFSLHPGEFNFRHLNGPMELCLNQQTIVE-PYTFPIQMVSFPKQI--FLNLA 150
Query: 344 DVEGMENNSVVDLIGVVSYISPTASLM----RKNGTETQKRTLHLRDMSGRSVELTLWGN 399
D+ + N ++VD++ +V ++ M RK + +LH+ + +WG+
Sbjct: 151 DIAELPNRTLVDIMAIVVHLDTIHRTMWGPFRKIVIMDARGSLHI---------IKVWGD 201
Query: 400 FCNDDGLR 407
N + LR
Sbjct: 202 LLNKNALR 209
>gi|326528545|dbj|BAJ93454.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 371
Score = 47.0 bits (110), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 738 SAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHW 797
S + C CG H + +CP+ S P GG +S +S G C+KC K GHW
Sbjct: 280 SKSSSGCFKCGQENHWAKDCPNQSSDPCSDKGGRTLSSATSSDG------CFKCGKAGHW 333
Query: 798 ARDCPSLNA 806
+RDCP N+
Sbjct: 334 SRDCPVTNS 342
>gi|357493169|ref|XP_003616873.1| hypothetical protein MTR_5g085220 [Medicago truncatula]
gi|355518208|gb|AES99831.1| hypothetical protein MTR_5g085220 [Medicago truncatula]
Length = 286
Score = 47.0 bits (110), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 103/251 (41%), Gaps = 28/251 (11%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDL--LDSDGGEIRVTCFNAVAD 279
I+ ++P WT+ RV + Y N++ F DL +D G I + +
Sbjct: 8 ISNVSPRKQSWTLVVRVVPAWFGKDYKNKKLS---FSMDLVLIDRKGDRIGASIRRILIY 64
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
+F Q++ G ++ +S + ++ N+ ++ + + V+L +P + F
Sbjct: 65 KFKEQLQEGMVFTISSFIVASNSGSYRPSRNEYKLNFTINTKVKLS--KTVLVPTNVYSF 122
Query: 340 RPINDV--EGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLW 397
P DV E +NN +VD+IGV M G E + + RD S + TL+
Sbjct: 123 TPAPDVFNESYDNNCLVDVIGV----------MIGVGVERE----YERD-STYCFKCTLF 167
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGK--VVGTISTTQLFIEPDFPEAHRL 455
G + D L V ++A+ +V F GK + S+T++ E L
Sbjct: 168 GEYVEDMNSFLSSGESQNV--VVAIMLTKVKLFQGKPTLQNAFSSTRITFNSKIGETKEL 225
Query: 456 KEWFEKEGKNT 466
++ F N+
Sbjct: 226 RKSFLSANTNS 236
>gi|413921626|gb|AFW61558.1| hypothetical protein ZEAMMB73_191775 [Zea mays]
Length = 277
Score = 47.0 bits (110), Expect = 0.049, Method: Composition-based stats.
Identities = 45/186 (24%), Positives = 81/186 (43%), Gaps = 25/186 (13%)
Query: 231 KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA----DQFYHQVE 286
K++I ARV K + +R HF L D +G +I + D H+
Sbjct: 37 KYSIVARVEVKFPIEPRFRERQ-----HFVLSDINGAKIEAITYMYETVKHFDNLLHEKH 91
Query: 287 AGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRP----- 341
K++ V + +L P + NF HL+ +E+ LD ++V+ ++P Q F
Sbjct: 92 VYKMHNV-KFNLHPGEFNFRHLNGPMELCLDQQAIVE-----PYTVPIQMAPFPKQILLN 145
Query: 342 INDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFC 401
+ D+ + N ++VD++ VV ++ M R + + D G + +WG+
Sbjct: 146 LADIAELPNRTLVDIMAVVVHLDTIHRTMWG-----PFRKIVIMDARGYLHIIKVWGDLL 200
Query: 402 NDDGLR 407
N + LR
Sbjct: 201 NKNALR 206
>gi|344213005|ref|YP_004797325.1| replication factor A [Haloarcula hispanica ATCC 33960]
gi|343784360|gb|AEM58337.1| replication factor A [Haloarcula hispanica ATCC 33960]
Length = 488
Score = 46.6 bits (109), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 18/184 (9%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
I AL T++ V +R ++ G +G+V + L D G IRVT ++ AD+
Sbjct: 165 IDALTMGQSDVTLRGLVLDTDTIRTFDRDDGSEGRVSNLTLGDE-TGRIRVTLWDDRADR 223
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
+++AG + G ++ + LH + +D + +E DA
Sbjct: 224 -AEELDAGAAVEIIDGYVRERDGSL-ELHVGDQGAVDEVDD-DVAFEPDAD--------- 271
Query: 341 PINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNF 400
PI +VE E D+ GVV P + R +G+E Q R + ++D +G + + LWG+
Sbjct: 272 PIAEVELEET---ADIAGVVRSADPKRTFDRDDGSEGQVRNVRIQDATG-DIRVALWGDK 327
Query: 401 CNDD 404
+ D
Sbjct: 328 ADKD 331
>gi|448303724|ref|ZP_21493673.1| replication factor A [Natronorubrum sulfidifaciens JCM 14089]
gi|445593509|gb|ELY47687.1| replication factor A [Natronorubrum sulfidifaciens JCM 14089]
Length = 477
Score = 46.6 bits (109), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 30/194 (15%)
Query: 210 VGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHY--NNQRGDGKVFHFDLLDSDGG 267
VG+SEV IA + P M + A+VT+ GE+R + + + DG+V + ++ D G
Sbjct: 48 VGESEVGG----IADIEPGMEEAKFVAKVTSIGEVRTFERDGEDEDGRVVNVEVADETGA 103
Query: 268 EIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE 327
+R ++ A+ ++E G++ + +G +P ++ F+ +EI +D Q+ +
Sbjct: 104 -VRAAFWDEHAEAAISELEEGQVLRI-KG--RP-KEGFSG----VEISVD-----QVEPD 149
Query: 328 DDASIPRQQFHFRPINDVEGMENNSV----VDLIGVVSYISPTASLMRKNGTETQKRTLH 383
D I Q + D +E S+ V+L+G+V + R +G+E + L
Sbjct: 150 PDTEIGEVQ-----VTDTHTVEALSLGLSNVNLVGLVLDTGSVRTFDRDDGSEGRVSNLT 204
Query: 384 LRDMSGRSVELTLW 397
L D +GR V +TLW
Sbjct: 205 LGDSTGR-VRVTLW 217
Score = 46.2 bits (108), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 80/184 (43%), Gaps = 18/184 (9%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
+ AL+ + + V G +R ++ G +G+V + L DS G +RVT ++ AD
Sbjct: 165 VEALSLGLSNVNLVGLVLDTGSVRTFDRDDGSEGRVSNLTLGDS-TGRVRVTLWDEQAD- 222
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
+++ V G +K + LE+ + V+ ED +P
Sbjct: 223 LATEIDPNTTVEVIDGYVKERDGS-------LELHVGNRGTVEEVDEDVEYVPEST---- 271
Query: 341 PINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNF 400
PI D +E VD+ GVV P + R +G+E Q R + ++D + + + LWG
Sbjct: 272 PIED---LEIGQTVDIAGVVRSADPKRTFDRDDGSEGQVRNVRVQDAT-DDIRVALWGEK 327
Query: 401 CNDD 404
+ D
Sbjct: 328 ADID 331
>gi|448350482|ref|ZP_21539295.1| replication factor A [Natrialba taiwanensis DSM 12281]
gi|445636752|gb|ELY89912.1| replication factor A [Natrialba taiwanensis DSM 12281]
Length = 498
Score = 46.6 bits (109), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 18/160 (11%)
Query: 244 LRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+R ++ G +GKV + L DS G +RVT ++ AD ++EA + V G ++
Sbjct: 186 VRTFDRDDGSEGKVSNLVLGDS-TGRVRVTLWDDQAD-LATELEADETVEVVDGYVRERD 243
Query: 303 KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSY 362
+ LE+ + V+ D +P PI D +E VDL GVV
Sbjct: 244 GS-------LELHVGNRGAVETVDADIEYVPEST----PIED---LEIGQTVDLAGVVRS 289
Query: 363 ISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCN 402
P + R +G+E Q + + ++D +G + + LWG +
Sbjct: 290 TDPKRTFDRDDGSEGQVKNVRVQDATG-DIRVALWGEKAD 328
>gi|413944680|gb|AFW77329.1| hypothetical protein ZEAMMB73_618034 [Zea mays]
Length = 335
Score = 46.6 bits (109), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 23/185 (12%)
Query: 231 KWTIKARVTAKG--ELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA----DQFYHQ 284
K++I ARV K E R + Q HF L D +G +I + D H+
Sbjct: 95 KYSIVARVEVKFLIEPRFRDRQ-------HFVLSDINGAKIEAITYMYETVKHFDNLLHE 147
Query: 285 VEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQ--LCYEDDASIPRQQFHFRPI 342
K++ V + +L P + NF HL+ +E+ LD ++V+ + A P+Q +
Sbjct: 148 KHVYKMHNV-KFNLHPGEFNFRHLNGPMELCLDQQAIVEPYIVPIQMAPFPKQI--LLNL 204
Query: 343 NDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCN 402
D+ + N ++VD++ VV ++ M R + + D G + +WG+ N
Sbjct: 205 ADIAELPNRTLVDIMAVVVHLDTIHRTM-----WGPFRKIVIMDARGHLHIIKVWGDLLN 259
Query: 403 DDGLR 407
+ LR
Sbjct: 260 KNALR 264
>gi|413945118|gb|AFW77767.1| hypothetical protein ZEAMMB73_102861 [Zea mays]
Length = 249
Score = 46.6 bits (109), Expect = 0.053, Method: Composition-based stats.
Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 23/185 (12%)
Query: 231 KWTIKARVTAK--GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA----DQFYHQ 284
K++I ARV K E R + Q HF D +G +I + D H+
Sbjct: 25 KYSIVARVEVKFPKEPRFRDRQ-------HFIFYDINGAKIEAITYMYETVKHFDNLLHE 77
Query: 285 VEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQ--LCYEDDASIPRQQFHFRPI 342
K++ V + SL P + NF HL+ +E+ LD ++V+ + A P+Q +
Sbjct: 78 KHVYKMHNV-KFSLHPGEFNFRHLNGPMELCLDQQTIVEPYIVPIQMAPFPKQI--LLNL 134
Query: 343 NDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCN 402
D+ + N ++VD++ +V ++ M R + + D G + +WG+ N
Sbjct: 135 ADIAELPNRTLVDIMAIVVHLDTIHRTMWG-----PFRKIVIMDARGYLHIIKVWGDLLN 189
Query: 403 DDGLR 407
+ LR
Sbjct: 190 KNALR 194
>gi|357112598|ref|XP_003558095.1| PREDICTED: uncharacterized protein LOC100838417 [Brachypodium
distachyon]
Length = 366
Score = 46.6 bits (109), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 744 CSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPS 803
C CG H + +CP+ S P GG S SS S C+KC GHW+RDCP+
Sbjct: 287 CFKCGQENHWAKDCPNQSSDPYSDKGGRTLTSASS------SDACFKCGMAGHWSRDCPA 340
Query: 804 LN 805
N
Sbjct: 341 AN 342
>gi|414887210|tpg|DAA63224.1| TPA: hypothetical protein ZEAMMB73_948032 [Zea mays]
Length = 176
Score = 46.6 bits (109), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/172 (19%), Positives = 80/172 (46%), Gaps = 7/172 (4%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSD--GGEIRVTCFNAVA 278
P++AL ++ ++ K E R +G + H D++ +D G I + +A
Sbjct: 5 PLSALTLQDRNAEVQIQIHRKWEFR---GAVDNGPILHIDMILTDCTGNAIHCQIPSFLA 61
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
+ + GKIY ++R S+ A+ + + DL +++ + ++LC+ + P +H
Sbjct: 62 ATRGDEFQVGKIYKMTRFSVARAKSTYKPVDGDLMLYVTPYTTLELCHTSQSCFPLYVYH 121
Query: 339 FRPIN--DVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMS 388
+ D +G + D++G+++ IS + + + R + ++++S
Sbjct: 122 LTSYDKIDPDGSNARNFHDVLGIITEISAIKPVENAHIPSSYNRHVLIKNLS 173
>gi|7801661|emb|CAB91582.1| putative protein [Arabidopsis thaliana]
Length = 448
Score = 46.6 bits (109), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 115/284 (40%), Gaps = 42/284 (14%)
Query: 377 TQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNG--KV 434
T K L D + + TLWG F + R + G+ I ++ ++ + G +
Sbjct: 82 TTKIEFELHDETDERIGCTLWGTFA-EQIFRACQDSNRGMV-ICILRFVKIKSYKGVRTL 139
Query: 435 VGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQS--------VSISRDSLSVGRAD-IRK 485
+ TQ+ + P EA ++ +G + S + +++D V D +R
Sbjct: 140 SNSFDVTQVHVNPPSSEAVFFQQALPSDGLSLISRERQPRWEMVVNKD---VDWLDYLRN 196
Query: 486 TVSQIKDEGLGTKEKPDWITVSATIVYIKCD-NFCYTACPIMIGDRPCNKKVMN------ 538
++S +K K + V TI I D + Y +C + CNKKV +
Sbjct: 197 SISDLKCSIEIGKAR-----VLCTIYAIDTDWAWYYISC------KTCNKKVNHIHAGVH 245
Query: 539 --NGDG---RWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDL 593
N G R+ CD C V RY+L + D+TG F E+ G SA +
Sbjct: 246 GVNNKGKKPRFWCDTCKTVVTNVIPRYMLYANVMDNTGEAKFLLFDSICSELTGESATSV 305
Query: 594 Y--SLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRV 635
SL V + E E V+N +LF + V++E SD + V
Sbjct: 306 LDGSLDEV-VDPENLPEPVKNLIGKTFLFLVWVEKEHISDGKEV 348
>gi|400621674|gb|AFP87471.1| vasa-like protein, partial [Nematostella vectensis]
Length = 906
Score = 46.6 bits (109), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 13/71 (18%)
Query: 742 QSCSSCGAVGHSSMNCPSIMSGPGQSSG--------GGYANSFSSGAGIATSSECYKCHK 793
++C CG GH S CP+ S Q SG G +A +G G S C+KC +
Sbjct: 325 RNCHKCGQEGHFSRECPNQTS---QGSGTCHKCGEVGHFARECPTGRG--QSDTCHKCGE 379
Query: 794 TGHWARDCPSL 804
TGH++R+CP+L
Sbjct: 380 TGHYSRECPTL 390
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 22/85 (25%)
Query: 733 PAAGTSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCH 792
P + ++C CG GH + CP+ Q S GG+ + C+KC
Sbjct: 236 PNQPSQGGGRACHKCGEEGHFARECPN------QPSQGGWCLT------------CHKCR 277
Query: 793 KTGHWARDCPSLNAAPPAYGSSGIG 817
+ GH+ARDCP+ P+ G G G
Sbjct: 278 EEGHYARDCPNQ----PSQGMGGGG 298
>gi|391333915|ref|XP_003741355.1| PREDICTED: uncharacterized protein LOC100901486 [Metaseiulus
occidentalis]
Length = 1310
Score = 46.6 bits (109), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 284 QVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPIN 343
Q+E GK Y ++ +KP F + ++D E+ +T + ++ D+A IP + PI
Sbjct: 1109 QIEIGKCYQITIFRVKPVNVKFENANHDFEV--QLTKLSKIREIDNAIIPELKTDLTPIV 1166
Query: 344 DVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
++ G N V+++ +V + P ++ ++ ++ + L D S R +T
Sbjct: 1167 EILGRNGNDFVNVMAIVYDVEPAQTVDCRDAKPRTRQNVTLVDNSLRMFFVT 1218
>gi|294875510|ref|XP_002767355.1| hypothetical protein Pmar_PMAR024550 [Perkinsus marinus ATCC 50983]
gi|294893078|ref|XP_002774328.1| hypothetical protein Pmar_PMAR025206 [Perkinsus marinus ATCC 50983]
gi|294931999|ref|XP_002780092.1| hypothetical protein Pmar_PMAR015595 [Perkinsus marinus ATCC 50983]
gi|294950219|ref|XP_002786520.1| hypothetical protein Pmar_PMAR005224 [Perkinsus marinus ATCC 50983]
gi|294952933|ref|XP_002787522.1| hypothetical protein Pmar_PMAR015877 [Perkinsus marinus ATCC 50983]
gi|239868918|gb|EER00073.1| hypothetical protein Pmar_PMAR024550 [Perkinsus marinus ATCC 50983]
gi|239879649|gb|EER06144.1| hypothetical protein Pmar_PMAR025206 [Perkinsus marinus ATCC 50983]
gi|239889936|gb|EER11887.1| hypothetical protein Pmar_PMAR015595 [Perkinsus marinus ATCC 50983]
gi|239900812|gb|EER18316.1| hypothetical protein Pmar_PMAR005224 [Perkinsus marinus ATCC 50983]
gi|239902524|gb|EER19318.1| hypothetical protein Pmar_PMAR015877 [Perkinsus marinus ATCC 50983]
Length = 267
Score = 46.6 bits (109), Expect = 0.061, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
Query: 727 YSGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSS 786
YSG + AAG Q C C A GH + C + G S G G
Sbjct: 172 YSGEKKLAAGAVTGGQYCYICKATGHIAAEC--------RERGATRPTSKPKGKGKGKGP 223
Query: 787 ECYKCHKTGHWARDC 801
CY C K GH ARDC
Sbjct: 224 RCYACQKYGHIARDC 238
>gi|169639643|gb|ACA60905.1| gag-pol polyprotein [Thalassiosira pseudonana]
Length = 1488
Score = 46.6 bits (109), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 734 AAGTSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHK 793
AA + CS+CG GH S +C S P +G N F+ EC+ CHK
Sbjct: 240 AAFKKQYKGRCSNCGEYGHKSGDC-SERDKPSSGTGNKTENRFNG--------ECHYCHK 290
Query: 794 TGHWARDCPSLNA 806
GH DC L A
Sbjct: 291 KGHKKEDCRKLKA 303
>gi|147769421|emb|CAN65830.1| hypothetical protein VITISV_038135 [Vitis vinifera]
Length = 904
Score = 46.6 bits (109), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 358 GVVSYISPTASLMRKNGTE-TQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGV 416
GVV +SPT S+ RK+ + KR + + D + +SV ++LW + + G L D
Sbjct: 766 GVVQSVSPTMSIRRKSNKDIVPKRDITIADKTKKSVVVSLWNDHGTNVGQELLDNADK-- 823
Query: 417 FPILAVKAGRVSDFNGKV-VGTISTTQLFIE 446
FPI+A+K+ +V + G+V +G IS L +E
Sbjct: 824 FPIVAIKSLKVGE--GRVLLGLISVLHLRVE 852
>gi|413949080|gb|AFW81729.1| hypothetical protein ZEAMMB73_665548 [Zea mays]
Length = 259
Score = 46.6 bits (109), Expect = 0.062, Method: Composition-based stats.
Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 29/188 (15%)
Query: 231 KWTIKARVTAKG--ELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA----DQFYHQ 284
K++I ARV K E R + Q HF L D +G +I + D H+
Sbjct: 19 KYSIVARVEVKFPIEPRFRDRQ-------HFILSDINGAKIEAITYMYETVKHFDNLLHE 71
Query: 285 VEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRP--- 341
K++ V + SL P + NF HL+ +E+ LD ++V+ ++P Q F
Sbjct: 72 KHDYKMHNV-KFSLHPGEFNFRHLNGPMELCLDQQTIVE-----PYTVPIQMAPFPKQIL 125
Query: 342 --INDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGN 399
+ D+ + N ++VD++ +V ++ M R + + D G + +WG+
Sbjct: 126 LNLADIAELPNRTLVDIMAIVVHLDTIHRTMWG-----PFRKIVIMDARGYLHIIKVWGD 180
Query: 400 FCNDDGLR 407
N + LR
Sbjct: 181 LLNKNALR 188
>gi|413916849|gb|AFW56781.1| hypothetical protein ZEAMMB73_895477 [Zea mays]
Length = 259
Score = 46.6 bits (109), Expect = 0.062, Method: Composition-based stats.
Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 29/188 (15%)
Query: 231 KWTIKARVTAKG--ELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA----DQFYHQ 284
K++I ARV K E R + Q HF L D +G +I + D H+
Sbjct: 19 KYSIVARVEVKFPIEPRFRDRQ-------HFILSDINGAKIEAITYMYETVKHFDNLLHE 71
Query: 285 VEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRP--- 341
K++ V + SL P + NF HL+ +E+ LD ++V+ ++P Q F
Sbjct: 72 KHDYKMHNV-KFSLHPGEFNFRHLNGPMELCLDQQTIVE-----PYTVPIQMAPFPKQIL 125
Query: 342 --INDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGN 399
+ D+ + N ++VD++ +V ++ M R + + D G + +WG+
Sbjct: 126 LNLADIAELPNRTLVDIMAIVVHLDTIHRTMWG-----PFRKIVIMDARGYLHIIKVWGD 180
Query: 400 FCNDDGLR 407
N + LR
Sbjct: 181 LLNKNALR 188
>gi|414878207|tpg|DAA55338.1| TPA: hypothetical protein ZEAMMB73_182758 [Zea mays]
Length = 353
Score = 46.6 bits (109), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 29/188 (15%)
Query: 231 KWTIKARVTAK--GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA----DQFYHQ 284
K++I ARV K E R + Q HF L D +G +I + D H+
Sbjct: 37 KYSIVARVEVKFPKEPRFRDRQ-------HFVLSDINGAKIEAITYMYETVKHFDNLLHE 89
Query: 285 VEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRP--- 341
K++ V + SL P + NF HL+ +E+ LD ++V+ ++P Q F
Sbjct: 90 KHVYKMHNV-KFSLHPGEFNFRHLNGPMELCLDQQTIVE-----PYTVPIQMAPFPKQIL 143
Query: 342 --INDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGN 399
+ D+ + N ++VD++ +V ++ M R + + D G + +WG+
Sbjct: 144 LNLADIAELPNRTLVDIMAIVVHLDTIHRTMWGPF-----RKIVIMDARGYLHIIKVWGD 198
Query: 400 FCNDDGLR 407
N + LR
Sbjct: 199 LLNKNALR 206
>gi|116754196|ref|YP_843314.1| replication factor A [Methanosaeta thermophila PT]
gi|116665647|gb|ABK14674.1| nucleic acid binding, OB-fold, tRNA/helicase-type [Methanosaeta
thermophila PT]
Length = 371
Score = 46.6 bits (109), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 87/206 (42%), Gaps = 25/206 (12%)
Query: 213 SEVPSRIIP--IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIR 270
S++ R+ P IA + P MG+ +I ARV G+ + + + G LL D G I
Sbjct: 156 SDIKVRVEPLKIAEIRPDMGEISIIARVIDPGKAKEFTRKDGSKGFVRSMLLGDDTGSIN 215
Query: 271 VTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDA 330
+T +N D G + V S + + F L TS + + +
Sbjct: 216 ITLWN---DHALIDASEGDVLEVINCSSRE-RYGFIELQ---------TSRYTVIRKSSS 262
Query: 331 SIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGR 390
I + F PI D + + ++ G ++ I R +GT+ ++++ D +GR
Sbjct: 263 EIKYSE-RFTPIAD---LRVGEICNIAGYLTGIGELREFQRDDGTKGYVTSINVTDETGR 318
Query: 391 SVELTLWGNFCN-----DDGLRLQHM 411
V ++LWG+ D G R++ M
Sbjct: 319 -VRVSLWGDLYRLLENADLGCRVEIM 343
>gi|448366510|ref|ZP_21554633.1| replication factor A [Natrialba aegyptia DSM 13077]
gi|445653965|gb|ELZ06821.1| replication factor A [Natrialba aegyptia DSM 13077]
Length = 494
Score = 46.2 bits (108), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 31/199 (15%)
Query: 210 VGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHY--NNQRGDGKVFHFDLLDSDGG 267
VG+SEV IA + P M + A+V + GE R + + + DG+V + ++ D + G
Sbjct: 48 VGESEVGG----IADIEPGMEEAKFVAKVLSVGERRTFERDGEDEDGQVVNVEVAD-ETG 102
Query: 268 EIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE 327
+R ++ AD ++E G++ + +G K D S V++ +
Sbjct: 103 SVRAAFWDEHADAAIDELEEGQVLRI-KGRPK-----------------DGFSGVEVSVD 144
Query: 328 DDASIPRQQFHFRPINDVEGMENNSV----VDLIGVVSYISPTASLMRKNGTETQKRTLH 383
+ P + + I+D +EN S+ V+L+G+V + R +G+E + L
Sbjct: 145 EVEPDPDTEIDVQ-ISDTYTVENLSLGLSNVNLVGLVLDTDTVRTFDRDDGSEGKVSNLV 203
Query: 384 LRDMSGRSVELTLWGNFCN 402
L D +GR V +TLW + +
Sbjct: 204 LGDSTGR-VRVTLWDDQAD 221
Score = 45.8 bits (107), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 18/160 (11%)
Query: 244 LRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+R ++ G +GKV + L DS G +RVT ++ AD ++EA + V G ++
Sbjct: 186 VRTFDRDDGSEGKVSNLVLGDS-TGRVRVTLWDDQAD-LATELEADETVEVVDGYVRERD 243
Query: 303 KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSY 362
+ LE+ + V+ D +P PI E +E VDL GVV
Sbjct: 244 GS-------LELHVGNRGAVETVDADIEYVPEST----PI---ENLEIGQTVDLAGVVRS 289
Query: 363 ISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCN 402
P + R +G+E Q + + ++D +G + + LWG +
Sbjct: 290 TDPKRTFDRDDGSEGQVKNVRVQDATG-DIRVALWGEKAD 328
>gi|4432807|gb|AAD20658.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1611
Score = 46.2 bits (108), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 19/87 (21%)
Query: 724 GNQYSGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIA 783
G +SG+ A G +C CG+ H+ +CP + PGQS G
Sbjct: 385 GKNHSGTCWKAIG------ACGRCGSKDHAIQSCPKM--EPGQSKVLG-----------E 425
Query: 784 TSSECYKCHKTGHWARDCPSLNAAPPA 810
+ C+ C KTGH R+CP L A A
Sbjct: 426 ETRTCFYCGKTGHLKRECPKLTAEKQA 452
>gi|354609343|ref|ZP_09027299.1| nucleic acid binding OB-fold tRNA/helicase-type [Halobacterium sp.
DL1]
gi|353194163|gb|EHB59665.1| nucleic acid binding OB-fold tRNA/helicase-type [Halobacterium sp.
DL1]
Length = 473
Score = 45.8 bits (107), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 80/170 (47%), Gaps = 18/170 (10%)
Query: 234 IKARVTAKGELRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYL 292
+ + A +R ++ G +G V + ++ + G +RVT ++ AD+ +++AG++
Sbjct: 177 LTGEILATESVRTFDRDDGSEGSVSNL-VVGDETGRVRVTLWDDQADR-ATELDAGEVVE 234
Query: 293 VSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNS 352
V G ++ + LE+ + V++ ED A P PI+ +E +
Sbjct: 235 VVDGYVRERDGS-------LELHVGDRGAVEVVDEDVAYEP----DSTPID---ALELDD 280
Query: 353 VVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCN 402
D+ GV+ P + R +G+E Q R + L+D SG + + LWG +
Sbjct: 281 SADIAGVIRSADPKRTFDRDDGSEGQVRNVRLQDDSG-DIRVALWGEKAD 329
>gi|413926426|gb|AFW66358.1| hypothetical protein ZEAMMB73_054825 [Zea mays]
Length = 301
Score = 45.8 bits (107), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 29/188 (15%)
Query: 231 KWTIKARVTAKG--ELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFY----HQ 284
K++I ARV K E R+ + Q HF L D G +I + +V + + H+
Sbjct: 59 KYSIVARVEVKFPIEPRYRDRQ-------HFILSDIHGAKIEAITYVSVTVKHFNNLLHE 111
Query: 285 VEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH-FRPIN 343
++ V G L P NF HL+ +E++ + ++V+ Y +P H F ++
Sbjct: 112 KHVYNMHNVKFG-LHPGPFNFRHLNGPMELYFNQQTIVE-PYTVPIQMPPFPKHIFFNLD 169
Query: 344 DVEGMENNSVVDLIGVVSYISPTASLM----RKNGTETQKRTLHLRDMSGRSVELTLWGN 399
D+ + N ++VD++ +V ++ M RK + +LH+ + +WG+
Sbjct: 170 DIAELPNRTLVDIMAIVVHMDTIHRTMWGPFRKIVIMDARGSLHI---------IKVWGD 220
Query: 400 FCNDDGLR 407
N + LR
Sbjct: 221 LLNKNALR 228
>gi|123325507|gb|ABM74410.1| vasa protein [Botrylloides violaceus]
Length = 630
Score = 45.8 bits (107), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 13/61 (21%)
Query: 744 CSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFS-SGAG-IATSSECYKCHKTGHWARDC 801
C CG GH S +CP+ G + FS +GAG A S+ CYKC + GH++R+C
Sbjct: 95 CFKCGEEGHISRDCPN-----------GQKSDFSRNGAGDCARSTACYKCGEEGHFSREC 143
Query: 802 P 802
P
Sbjct: 144 P 144
>gi|357459409|ref|XP_003599985.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
gi|355489033|gb|AES70236.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
Length = 537
Score = 45.8 bits (107), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 76/168 (45%), Gaps = 8/168 (4%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PI+ ++ W IKARV ++ +N + L+DS+G I + + +
Sbjct: 7 PISQISSSKPAWNIKARVVRLWKVSDFNRNTLPFSI-EMVLMDSEGSRIHASIKKTLLYK 65
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEI-FLDMTSMVQLCYEDDASIPRQQFHF 339
F ++ GK+Y + ++ H+ ++ F T + LC A + F F
Sbjct: 66 FQSEIREGKVYSFENMGIAANGGSYKTTHHPYKLNFQFGTKCLSLC---GALVSGSDFKF 122
Query: 340 RPINDVEG--MENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLR 385
PI+D+ G + + +VD+IG+++ + T +NG+ T+ + +
Sbjct: 123 VPISDIVGGSYDCDYLVDVIGMLTGVG-TKREYERNGSATKLNVIAME 169
>gi|125977312|ref|XP_001352689.1| GA21193 [Drosophila pseudoobscura pseudoobscura]
gi|54641438|gb|EAL30188.1| GA21193 [Drosophila pseudoobscura pseudoobscura]
Length = 352
Score = 45.8 bits (107), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 12/50 (24%)
Query: 781 GIATSSECYKCHKTGHWARDCPSLNAAPPAYGSSGIG------ISAAGYR 824
G+ +CY+C ++GHW+++CP L YGS+G G +SA GYR
Sbjct: 163 GMGDPEQCYRCGRSGHWSKECPRL------YGSTGGGREPPSPLSAGGYR 206
>gi|414878547|tpg|DAA55678.1| TPA: hypothetical protein ZEAMMB73_083768 [Zea mays]
Length = 409
Score = 45.8 bits (107), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 29/188 (15%)
Query: 231 KWTIKARVTAK--GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFN----AVADQFYHQ 284
K++I ARV K E R + Q HF D +G +I + D H+
Sbjct: 169 KYSIVARVEVKFPKEPRFRDRQ-------HFIFYDINGAKIEAITYMYETVKYFDNLLHE 221
Query: 285 VEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRP--- 341
K++ V + SL + NF HL+ +E+ LD ++V+ ++P Q F
Sbjct: 222 KHVYKMHNV-KFSLHSGEFNFRHLNGPMELCLDQQTIVE-----PYTVPIQMAPFPKQIL 275
Query: 342 --INDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGN 399
+ D+ + N ++VD++ +V ++ M R + + D G + +WG+
Sbjct: 276 LNLADIAELPNRTLVDIMAIVVHLDTIHRTM-----WGPFRKIVIMDARGYLHIIKVWGD 330
Query: 400 FCNDDGLR 407
N + LR
Sbjct: 331 LLNKNALR 338
>gi|17647581|ref|NP_523957.1| lark, isoform A [Drosophila melanogaster]
gi|24659966|ref|NP_729237.1| lark, isoform B [Drosophila melanogaster]
gi|24659971|ref|NP_729238.1| lark, isoform C [Drosophila melanogaster]
gi|24659976|ref|NP_729239.1| lark, isoform D [Drosophila melanogaster]
gi|24659981|ref|NP_729240.1| lark, isoform E [Drosophila melanogaster]
gi|62510825|sp|Q94901.1|LARK_DROME RecName: Full=RNA-binding protein lark
gi|1518654|gb|AAB07067.1| RNA-binding protein lark [Drosophila melanogaster]
gi|7295256|gb|AAF50578.1| lark, isoform A [Drosophila melanogaster]
gi|16769574|gb|AAL29006.1| LD40792p [Drosophila melanogaster]
gi|23094008|gb|AAN12053.1| lark, isoform B [Drosophila melanogaster]
gi|23094009|gb|AAN12054.1| lark, isoform C [Drosophila melanogaster]
gi|23094010|gb|AAN12055.1| lark, isoform D [Drosophila melanogaster]
gi|23094011|gb|AAN12056.1| lark, isoform E [Drosophila melanogaster]
gi|220946850|gb|ACL85968.1| lark-PA [synthetic construct]
gi|220956448|gb|ACL90767.1| lark-PA [synthetic construct]
Length = 352
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 12/50 (24%)
Query: 781 GIATSSECYKCHKTGHWARDCPSLNAAPPAYGSSGIG------ISAAGYR 824
G+ +CY+C ++GHW+++CP L YGS+G G +SA GYR
Sbjct: 163 GMGDPEQCYRCGRSGHWSKECPRL------YGSAGGGREPPSPLSAGGYR 206
>gi|77556294|gb|ABA99090.1| hypothetical protein LOC_Os12g32690 [Oryza sativa Japonica Group]
Length = 1312
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 5/129 (3%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL--DSDGGEIRVTCFNAVAD 279
IA+L G T++ R++ L Y++Q + + H L+ D G I +
Sbjct: 615 IASLELSDGNPTLRIRIS---RLWEYHDQNDETNLHHIGLVLVDQKGSSIAAMIYPPCDK 671
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
+F + GK+YL++ +KP K++ + N L I S V+ C + + + +
Sbjct: 672 KFKPLITEGKVYLLTYYRVKPCTKHYWPVDNKLAITFTWWSTVEECVDVPDNFAQYAYSL 731
Query: 340 RPINDVEGM 348
P N++ +
Sbjct: 732 TPFNELRSL 740
>gi|357290773|gb|AET73373.1| hypothetical protein EMVG_00087 [Emiliania huxleyi virus PS401]
Length = 215
Score = 45.8 bits (107), Expect = 0.11, Method: Composition-based stats.
Identities = 38/106 (35%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
++ IA L G KARV R Y RG G + DL D+ G IR FNA A
Sbjct: 114 LLSIAELGEAPGAPLFKARVDDLC-FREYG--RGAGVMLCLDLADATG-TIRAVAFNASA 169
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQL 324
+ Q+ AG LV G LK ++ F HN E+ LD ++V +
Sbjct: 170 RRLKTQLRAGDDILVRGGRLKRVEERFRRQHN-FELTLDERAVVDV 214
>gi|297840491|ref|XP_002888127.1| hypothetical protein ARALYDRAFT_315285 [Arabidopsis lyrata subsp.
lyrata]
gi|297333968|gb|EFH64386.1| hypothetical protein ARALYDRAFT_315285 [Arabidopsis lyrata subsp.
lyrata]
Length = 286
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Query: 769 GGGYANSFSSGAGIATSSECYKCHKTGHWARDCPSLNA 806
GGGY S G + EC+KC + GHWARDCPS
Sbjct: 103 GGGY-----SSRGKGSEDECFKCRRPGHWARDCPSTGG 135
>gi|448543522|ref|ZP_21625076.1| replication factor A [Haloferax sp. ATCC BAA-646]
gi|448550614|ref|ZP_21628917.1| replication factor A [Haloferax sp. ATCC BAA-645]
gi|448559156|ref|ZP_21633408.1| replication factor A [Haloferax sp. ATCC BAA-644]
gi|445706245|gb|ELZ58128.1| replication factor A [Haloferax sp. ATCC BAA-646]
gi|445711119|gb|ELZ62913.1| replication factor A [Haloferax sp. ATCC BAA-645]
gi|445711526|gb|ELZ63317.1| replication factor A [Haloferax sp. ATCC BAA-644]
Length = 491
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 78/172 (45%), Gaps = 18/172 (10%)
Query: 234 IKARVTAKGELRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYL 292
++ ++ G +R ++ G +G+V + + D G +RVT ++ AD ++E G+
Sbjct: 176 LEGKILDAGTVRTFDRDDGTEGRVSNLSVGDP-TGRVRVTLWDERAD-LAEELEPGQSVE 233
Query: 293 VSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNS 352
V G ++ + LE+ + V++ ED +P D+E +E
Sbjct: 234 VVDGYVRERDGS-------LELHVGSRGAVEVIDEDIEYVPE-------TTDIETLELGQ 279
Query: 353 VVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDD 404
VD+ G V + R +G+E Q R + ++D +G + + LWG + D
Sbjct: 280 TVDIAGGVIEADGKRTFDRDDGSEGQVRNIRVKDGTG-DIRVALWGEKADAD 330
>gi|414872930|tpg|DAA51487.1| TPA: hypothetical protein ZEAMMB73_025868 [Zea mays]
Length = 301
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 29/188 (15%)
Query: 231 KWTIKARVTAK--GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA----DQFYHQ 284
K++I ARV K E R + Q HF L D +G +I + D H+
Sbjct: 61 KYSIVARVEVKFPKEPRFRDRQ-------HFVLSDINGAKIEAITYMYETVKHFDNLLHE 113
Query: 285 VEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRP--- 341
K++ V + +L P + NF HL+ +E+ LD ++V+ ++P Q F
Sbjct: 114 KHVYKMHNV-KFNLHPGEFNFRHLNGPMELCLDQQTIVE-----PYTVPIQMAPFPKQIL 167
Query: 342 --INDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGN 399
+ D+ + N ++VD++ VV ++ M R + + D G + +WG+
Sbjct: 168 LNLADIAELPNRTLVDIMAVVVHLDTIQRTM-----WGPFRKIVIMDARGYLHIIKVWGD 222
Query: 400 FCNDDGLR 407
N + LR
Sbjct: 223 LLNKNALR 230
>gi|223056241|gb|ACM80366.1| vasa [Patiria miniata]
Length = 730
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 43/108 (39%), Gaps = 18/108 (16%)
Query: 696 APVVANYVGNNSNAGAASGLLANQMGQYGNQYSGSRLPAAGTSAARQSCSSCGAVGHSSM 755
A V N G N ++G ++ N G + C +C GH S
Sbjct: 69 ASTVVNGSGWNGDSGGTDTVITNS----GWKGGFGSGTGGSKGGGGNKCYNCQEEGHMSR 124
Query: 756 NCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPS 803
+CP+ S G G ECYKCH+TGH+ARDCP+
Sbjct: 125 DCPNPKS--------------GGGRGGGGGGECYKCHETGHFARDCPN 158
Score = 43.1 bits (100), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 14/69 (20%)
Query: 744 CSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPS 803
C +C GH S +CP+ S G G EC+KCH+TGH+AR+CP+
Sbjct: 172 CYNCQEEGHMSRDCPNPKS--------------GGGRGGGGGGECFKCHQTGHFARECPN 217
Query: 804 LNAAPPAYG 812
+A G
Sbjct: 218 EESADAGAG 226
>gi|443897220|dbj|GAC74561.1| vesicle coat complex AP-2, alpha subunit [Pseudozyma antarctica T-34]
Length = 1140
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 36/88 (40%), Gaps = 22/88 (25%)
Query: 727 YSGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSS 786
+ S A T+ A+Q C CG GH +CP+ SG ++
Sbjct: 1004 HESSACEAPRTADAKQ-CYGCGGKGHIRADCPTPASGAAKA------------------- 1043
Query: 787 ECYKCHKTGHWARDCPSLNAAPPAYGSS 814
CY C GH ARDCP N PPA S
Sbjct: 1044 -CYTCGDQGHRARDCPQ-NPKPPAAAES 1069
>gi|414877715|tpg|DAA54846.1| TPA: hypothetical protein ZEAMMB73_535318 [Zea mays]
Length = 305
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 231 KWTIKARVTAKG--ELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA----DQFYHQ 284
K++I ARV K E R ++ Q HF L D +G +I + D H+
Sbjct: 78 KYSIVARVEVKFPIEPRFHDRQ-------HFVLSDINGAKIEAITYMYETVKHFDNLLHE 130
Query: 285 VEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPIND 344
K++ V + SL P + NF HL+ +++ L+ ++V+ P + F + D
Sbjct: 131 KHVYKMHNV-KFSLHPGEFNFRHLNGPMKLCLNQQAIVEPYTFPIQMTPFPKQIFLNLAD 189
Query: 345 VEGMENNSVVDLIGVVSYISPTASLM----RKNGTETQKRTLHLRDMSGRSVELTLWGNF 400
+ + N ++VD++ +V ++ M RK + +LH+ + +WG+
Sbjct: 190 IVELPNMTLVDIMAIVVHMDTIHRTMWGPFRKIVIMDARGSLHI---------IKVWGDL 240
Query: 401 CNDDGLR 407
N + LR
Sbjct: 241 LNKNALR 247
>gi|357470041|ref|XP_003605305.1| Replication factor A protein [Medicago truncatula]
gi|355506360|gb|AES87502.1| Replication factor A protein [Medicago truncatula]
Length = 283
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 102/237 (43%), Gaps = 15/237 (6%)
Query: 236 ARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSR 295
RV ++ Y N++ + L+D G I + + + Q++ G ++ +S
Sbjct: 3 VRVVRAWFVQDYKNKKLSFSM-ELVLMDRKGDRIGASIRRTLIYKSKEQLQEGMVFTISS 61
Query: 296 GSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDV--EGMENNSV 353
+ ++ N+ ++ + + V+L +P + F DV E +NN +
Sbjct: 62 FDVASNSGSYRPSRNEYKLNFTINTKVKLS--KTVLVPTNVYSFTSAYDVFNESYDNNFL 119
Query: 354 VDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCD 413
VD+IGV++ + R +G +T+ + L D +G + TL+G + + L
Sbjct: 120 VDVIGVMTGVGVEREYER-DGVKTKMNVIEL-DSNGYRFKCTLFGEYVEE----LSSFLS 173
Query: 414 SGVFP--ILAVKAGRVSDFNGK--VVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNT 466
SG ++A+ +V F GK + S+T++ P+ E L++ F N+
Sbjct: 174 SGESQNVVVAIMLAKVKLFQGKPALQNAFSSTRITFNPEIGETKELRKSFLSANTNS 230
>gi|414873229|tpg|DAA51786.1| TPA: hypothetical protein ZEAMMB73_750935 [Zea mays]
Length = 369
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 722 QYGNQYSGSRLPAAGTSAARQS--CSSCGAVGHSSMNCPSIMSGPGQSSGG-GYANSFSS 778
Q QY +P+ + R S C CG H + +CP+ S P GG A + S
Sbjct: 265 QASAQYQADSMPSIQNPSQRSSSSCFKCGQENHWARDCPNQPSDPYPDKGGRPVAPAGSP 324
Query: 779 GAGIATSSECYKCHKTGHWARDCP 802
GA CY C ++GHW+RDCP
Sbjct: 325 GA-------CYNCGRSGHWSRDCP 341
>gi|357503597|ref|XP_003622087.1| Replication factor A 51 kDa subunit [Medicago truncatula]
gi|355497102|gb|AES78305.1| Replication factor A 51 kDa subunit [Medicago truncatula]
Length = 466
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 66/323 (20%), Positives = 135/323 (41%), Gaps = 25/323 (7%)
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
Q +E G Y + + ++ ++ F ++ ++ L ++++ D I F+F
Sbjct: 22 QLGDSIEEGASYTIEKFLVQFNKEKFKPTNHKYKLTLIGSTIITKTSYD--KISANLFNF 79
Query: 340 RPINDVEGMENNSVVDLIGVVSYISPTASL--MRKNGTETQKRTLHLRDMSGRSVELTLW 397
+ G + V L+ V+ ++ T + ++ G T+ L L D+ ++ TLW
Sbjct: 80 TKFQHIIGGTDKGV--LMDVIGHVVGTTDIKDVQVKGKMTKILDLTLEDLESNTIICTLW 137
Query: 398 GNFCNDDGLRLQHMCDSG-VFPILAVKA---GRVSDFNGK--VVGTISTTQLFIEPDFPE 451
G+F +M +G FPI+ V V F G + + T+L I P+ E
Sbjct: 138 GHFAEQMN---SYMSTNGNTFPIVVVMHLCRLNVYVFGGMYGIANAFNETKLLINPNIEE 194
Query: 452 AHRLKEWFEK-EGKNTQSVS-ISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSAT 509
K+ + TQ V+ ++ S D+ +T + + K+ ++ ++
Sbjct: 195 CCNYKKGMKTGNASLTQGVTQMTAQSSLSLSNDLLQTKNMTILDITQAKQVGAYVVLAKI 254
Query: 510 IVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDH 569
I +CY +C C KKV ++ C++CD ++V+ R+++ + D
Sbjct: 255 IGIDTNKKWCYVSC------NKCFKKV-EPVCTKYFCEKCD-TLVDATKRFMVHIHVMDD 306
Query: 570 TGLTWVTAFQECAEEIMGMSAKD 592
+G T + F + G + K+
Sbjct: 307 SGSTTIVLFDGVISQHFGKTTKE 329
>gi|328725637|ref|XP_003248557.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Acyrthosiphon pisum]
Length = 248
Score = 45.4 bits (106), Expect = 0.13, Method: Composition-based stats.
Identities = 48/208 (23%), Positives = 100/208 (48%), Gaps = 26/208 (12%)
Query: 290 IYLVSRGSLKPAQKNFNHLHNDLEIFLD-MTSMVQLCYEDDASIPRQQFHFRPINDVEGM 348
+Y + G +K A K +N N+ EIF + +T++++ D IP Q + I+++ M
Sbjct: 8 VYNIKNGEVKEADKAYNKSKNNYEIFFNGLTTIIE--RSGDTDIPNHQ-QLKTIDNLFSM 64
Query: 349 ENNSVVDLIGVVSYISPTASLMR-KNGTETQKRTLHLRDMSGRSVELTLWG----NFCND 403
+ N+ LIG S I ++ + K + K +++ V +TLW NF +
Sbjct: 65 DQNT---LIGNNSDILLSSLIYNYKRIYLSYKIHYYIKIAFFLKVTVTLWDTEATNFNAN 121
Query: 404 DGLRLQHMCDSGVFPILAVKAGRVSDF-NGKVVGTISTTQLFIEPDFPEAHRLKEWFEKE 462
+G I+++ G++ D+ N K + ++++ I P++ E L+ W+ KE
Sbjct: 122 EG------------DIMSIMEGKIIDYKNVKKISMTGSSKIEINPNWNETLDLQNWY-KE 168
Query: 463 GKNTQSVSISRDSLSVGRADIRKTVSQI 490
+ + +++S+ S+ + +T +I
Sbjct: 169 FEKKEFLNLSQMSIGSQEHNTSETSQRI 196
>gi|448737606|ref|ZP_21719644.1| replication factor A [Halococcus thailandensis JCM 13552]
gi|445803563|gb|EMA53853.1| replication factor A [Halococcus thailandensis JCM 13552]
Length = 478
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 18/162 (11%)
Query: 244 LRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+R + G +GKV + L D G++RVT ++ +Q H E L +++
Sbjct: 185 IRTFERDDGSEGKVANLTLGDE-TGKVRVTLWD---EQTEHAAE-----LDPGTTVELVD 235
Query: 303 KNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSY 362
+LE+ L S ++ D +P PI E +E +++ D+ GVV
Sbjct: 236 GYVRERDGELEVHLSARSTLEPVDADVEYVPETT----PI---EALEIDTIADIGGVVRS 288
Query: 363 ISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDD 404
P + R +G+E Q R + ++D SG + + LWG + D
Sbjct: 289 TDPKRTFDRDDGSEGQVRNVRIQDDSG-DIRVALWGEKADRD 329
Score = 43.5 bits (101), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 92/227 (40%), Gaps = 33/227 (14%)
Query: 185 YASNYARTPQAPYMQS-PSMYANRGLVGKSEVPSRIIP----------IAALNPYMGKWT 233
YA A P+ + ++ G + E + +I +A + M +
Sbjct: 8 YADLDAEVPETEFREAVEEKVEEMGGLADEETAAMLIAHELADGEIEGVADIEAGMEEAK 67
Query: 234 IKARVTAKGELRHY--NNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIY 291
A+VT GELR + + + DGKV + ++ D G +RV ++ A+ ++E G +
Sbjct: 68 FAAKVTHVGELRTFERDGEDEDGKVVNVEVADE-TGRVRVAFWDERAEGAVDELEPGDVL 126
Query: 292 LVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGME-N 350
++ +P + +N +E+ D + + +EG+
Sbjct: 127 KIAG---RPREG-----YNGIEVSADRAEPADVEID---------VDLDGAESIEGLTLG 169
Query: 351 NSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLW 397
S V L GVV + R +G+E + L L D +G+ V +TLW
Sbjct: 170 ESDVTLTGVVLDTDSIRTFERDDGSEGKVANLTLGDETGK-VRVTLW 215
>gi|448725442|ref|ZP_21707897.1| replication factor A [Halococcus morrhuae DSM 1307]
gi|445798289|gb|EMA48704.1| replication factor A [Halococcus morrhuae DSM 1307]
Length = 479
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 22/164 (13%)
Query: 244 LRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYH--QVEAGKIYLVSRGSLKP 300
+R + G +GKV + L D G++RVT ++ +Q H +++ G + G ++
Sbjct: 185 IRTFERDDGSEGKVANLTLGDE-TGKVRVTLWD---EQTEHADELDPGTTVELVDGYVR- 239
Query: 301 AQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVV 360
+LE+ L S ++ D +P PI D +E +++ D+ GVV
Sbjct: 240 ------ERDGELEVHLSARSTLEPVDADVEYVPETT----PIED---LEIDTITDIGGVV 286
Query: 361 SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDD 404
P + R +G+E Q R + ++D SG + + LWG + D
Sbjct: 287 RSTDPKRTFDRDDGSEGQVRNVRIQDDSG-DIRVALWGEKADRD 329
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 93/227 (40%), Gaps = 33/227 (14%)
Query: 185 YASNYARTPQAPYMQS-PSMYANRGLVGKSEVPSRIIP----------IAALNPYMGKWT 233
YA A P+ + ++ G + E + +I IA + M +
Sbjct: 8 YADLDAEVPETEFREAVEEKVEEMGGLADEETAAMLIAHELADGEIEGIADIEAGMEEAK 67
Query: 234 IKARVTAKGELRHY--NNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIY 291
A+VT GELR + +++ DGKV + ++ D G +RV ++ A+ ++E G +
Sbjct: 68 FAAKVTHVGELRSFERDDEDEDGKVVNVEVADE-TGRVRVAFWDEPAEGAVEELEPGDVL 126
Query: 292 LVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGME-N 350
++ +P + +N +E+ D + + +EG+
Sbjct: 127 KIAG---RPREG-----YNGIEVSADRAEPADVEID---------VDLDGAESIEGLTLG 169
Query: 351 NSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLW 397
S V L GVV + R +G+E + L L D +G+ V +TLW
Sbjct: 170 ESDVTLTGVVLDTDSIRTFERDDGSEGKVANLTLGDETGK-VRVTLW 215
>gi|110667397|ref|YP_657208.1| replication factor A [Haloquadratum walsbyi DSM 16790]
gi|109625144|emb|CAJ51563.1| replication protein A [Haloquadratum walsbyi DSM 16790]
Length = 518
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 86/179 (48%), Gaps = 19/179 (10%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHY--NNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
+A + P M + A+V G+ R + + DG+V + ++ D+ G+IRVT ++ +AD
Sbjct: 56 VADIEPGMDEAKFLAKVLQIGDCRTFERDGDAEDGRVINIEVADA-SGQIRVTMWDDMAD 114
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
Q+E G++ + G K ++D+EI +D V+ + + + +
Sbjct: 115 DAIDQLEVGQVLRIG-GRPKDG-------YDDVEIDVD---TVEPAPDAEIDVDIHTVNT 163
Query: 340 RPINDVE-GMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLW 397
+ D+ G+ S V+L G V + R +G+E + L + D +GR + +TLW
Sbjct: 164 HRVEDLSLGL---SDVNLRGRVLSTDKIRTFDRDDGSEGRVANLSVGDPTGR-IRVTLW 218
>gi|448407833|ref|ZP_21574028.1| replication factor A [Halosimplex carlsbadense 2-9-1]
gi|445675083|gb|ELZ27618.1| replication factor A [Halosimplex carlsbadense 2-9-1]
Length = 493
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 22/178 (12%)
Query: 229 MGKWTIKAR--VTAKGELRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQV 285
MG+ + R V +R ++ G +GKV + LL + G +RVT ++ AD+ ++
Sbjct: 170 MGQSDVNVRGIVLETDSIRTFDRDDGSEGKVSNL-LLGDETGRVRVTMWDDRADR-ATEL 227
Query: 286 EAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDV 345
+ G + G ++ DLE+ + + E F P D
Sbjct: 228 DPGTAVEIVDGYVR-------EREGDLELHVGDHGAIDEIDE--------TVEFTPEADA 272
Query: 346 EG-MENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCN 402
G +E + VVDL GVV P + R +G+E Q R + ++D + + + LWG +
Sbjct: 273 IGAVEMDQVVDLAGVVRSADPKRTFDRDDGSEGQVRNIRVQDDT-DDIRVALWGEKAD 329
>gi|67423403|dbj|BAD99522.1| VASA RNA helicase [Daphnia magna]
Length = 775
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 20/62 (32%)
Query: 742 QSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDC 801
++C CG GH S +CP Q GGG S+C+KCH+ GH ++DC
Sbjct: 245 RTCHKCGEEGHVSRDCP-------QGGGGG-------------DSKCFKCHEAGHTSKDC 284
Query: 802 PS 803
P+
Sbjct: 285 PN 286
>gi|303272625|ref|XP_003055674.1| RNA binding protein [Micromonas pusilla CCMP1545]
gi|226463648|gb|EEH60926.1| RNA binding protein [Micromonas pusilla CCMP1545]
Length = 310
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 13/70 (18%)
Query: 740 ARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGA-GIATSSECYKCHKTGHWA 798
A +C+ CG GH + +CP N +GA G +C C + GHWA
Sbjct: 208 ADDTCNRCGKTGHWARDCPEPR------------NDGKTGARGPGADDKCNICGELGHWA 255
Query: 799 RDCPSLNAAP 808
RDCP+ + P
Sbjct: 256 RDCPNKDKFP 265
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 14/74 (18%)
Query: 744 CSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSS--------------GAGIATSSECY 789
C+ CG +GH + +CPS + GG + + C
Sbjct: 154 CNKCGGIGHWARDCPSRIDVGRGGGGGRFRSDHDDRGRDHRGERRERPPRREPGADDTCN 213
Query: 790 KCHKTGHWARDCPS 803
+C KTGHWARDCP
Sbjct: 214 RCGKTGHWARDCPE 227
>gi|255539441|ref|XP_002510785.1| actin depolymerizing factor, putative [Ricinus communis]
gi|223549900|gb|EEF51387.1| actin depolymerizing factor, putative [Ricinus communis]
Length = 498
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 23/89 (25%)
Query: 715 LLANQMGQYGNQYSGSRLP-AAGTSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYA 773
LL Q G +S R P + R+ C +CG GHS NCP P ++ G YA
Sbjct: 106 LLCRQRG-----HSLKRCPNKKDENVDRKLCYNCGETGHSLSNCPQ----PLKNGGTKYA 156
Query: 774 NSFSSGAGIATSSECYKCHKTGHWARDCP 802
N C+ C+++GH ++DCP
Sbjct: 157 N-------------CFICNESGHLSKDCP 172
>gi|448330773|ref|ZP_21520051.1| replication factor A [Natrinema versiforme JCM 10478]
gi|445610927|gb|ELY64691.1| replication factor A [Natrinema versiforme JCM 10478]
Length = 497
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 20/163 (12%)
Query: 244 LRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302
+R ++ G +GKV + L DS G IRVT ++ AD ++EAG V G +K
Sbjct: 186 VRTFDRDDGSEGKVSNLVLGDS-TGRIRVTLWDEQAD-LATELEAGTTVEVIDGYVKERD 243
Query: 303 KNFN-HLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVS 361
+ H+ N + E+ PI D +E + VD+ GVV
Sbjct: 244 GSLELHVGN------------RGAVEEVDEEVEYVPENTPIED---LEIDQTVDIAGVVR 288
Query: 362 YISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDD 404
P + R +G+E Q R + ++D +G + + LWG+ + D
Sbjct: 289 SADPKRTFDRDDGSEGQVRNIRVQDATG-DIRVALWGDKADID 330
>gi|399575764|ref|ZP_10769522.1| single-stranded DNA-binding protein [Halogranum salarium B-1]
gi|399240032|gb|EJN60958.1| single-stranded DNA-binding protein [Halogranum salarium B-1]
Length = 492
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 96/232 (41%), Gaps = 31/232 (13%)
Query: 210 VGKSE-VPSRIIPIAALNPY--------MGKWTIKARVTAKGELRHYNNQRG-DGKVFHF 259
V K+E P + + L+ Y + +K +V E+R ++ G +G+V +
Sbjct: 145 VDKAEPAPGEDVDVQVLDTYRVEDLSLGLSDVNLKGKVLDTSEIRTFDRDDGSEGRVANL 204
Query: 260 DLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMT 319
+ D G +RVT ++ AD+ ++ G V G ++ + LE+ +
Sbjct: 205 TVGDE-TGRVRVTLWDEQADR-ADELATGVTVEVVDGYVRERDGS-------LELHVGSR 255
Query: 320 SMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQK 379
V+ E+ +P D+E +E VD+ G V P + R +G++ Q
Sbjct: 256 GAVEELDEEVQYVP-------DTADIEDLEIGQTVDIAGGVIETDPKRTFDRDDGSQGQV 308
Query: 380 RTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFN 431
R + ++D +G + + LWG + D + D V + +K G D
Sbjct: 309 RNIRVKDDTG-EIRVALWGEKADTD----VDLADHVVLTDVEIKDGWQEDLE 355
>gi|440292825|gb|ELP86002.1| hypothetical protein EIN_234190 [Entamoeba invadens IP1]
Length = 344
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 17/186 (9%)
Query: 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAV 277
+I P A + TIK RV +K + + G F L D++ E+ V C++
Sbjct: 139 KITPFAVITTMTNNVTIKGRVISKSNI----TRTVTGTKLCFLLQDANENEMTVNCYDNE 194
Query: 278 ADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQL-CYEDDASIPRQQ 336
+Q + + G +Y + K + + HL + EI ++MT ++ E + IP +
Sbjct: 195 CEQAFDMFQVGSVYFIYCRQFKEIKSSI-HLR-EKEIDVNMTYTCEIPTQESENDIPSKG 252
Query: 337 FHFRPINDVEGMENNSV---VDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVE 393
I + ++N +V D+ GVV I+ ++ + RT+ + D S +E
Sbjct: 253 L----ITTISYLKNATVEKLYDVSGVVIKINKEDNVTKGGKV---YRTILVVDQSNYIIE 305
Query: 394 LTLWGN 399
+ WG+
Sbjct: 306 IKFWGD 311
>gi|10039329|dbj|BAB13307.1| vasa-related protein CnVAS1 [Hydra vulgaris]
Length = 797
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 730 SRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMSGPGQS-----SGGGYANSFSSGAGIAT 784
SR G S ++C CG GH S CP G G++ G + G+G
Sbjct: 106 SRDCPQGGSGGGRACHKCGKEGHMSRECPD-GGGGGRACFKCKQEGHMSKDCPQGSGGGG 164
Query: 785 SSECYKCHKTGHWARDCP 802
S C+KC K GH +R+CP
Sbjct: 165 SRTCHKCGKEGHMSRECP 182
>gi|345489644|ref|XP_003426189.1| PREDICTED: replication factor A protein 1-like [Nasonia
vitripennis]
Length = 187
Score = 45.1 bits (105), Expect = 0.15, Method: Composition-based stats.
Identities = 37/193 (19%), Positives = 80/193 (41%), Gaps = 9/193 (4%)
Query: 274 FNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIP 333
F+ D+F+ ++ IY +KP NFN+L E+ + ++ + D +
Sbjct: 2 FDNDCDEFHPLIQEDNIYEFRNMLMKPTNSNFNNLGTLCELCCTQFTEIRKVEDSDLDVS 61
Query: 334 --RQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRS 391
+ +F+ + +E M +++D+ + + A + GT K + + D + S
Sbjct: 62 HYKSSSNFKTLEGIEMMPKGTLIDIKIAIKEVKDAAVVTNNQGTSFDKLDVIIYDNTKDS 121
Query: 392 VELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPE 451
L LWG ++ + + ++ I K G D K + ++T+ + +
Sbjct: 122 FTLVLWGLKSKENKYPI-----NSIWSIRGAKVGEYGD--KKYIQCVTTSTISQDLTSEL 174
Query: 452 AHRLKEWFEKEGK 464
+ RL+ W + K
Sbjct: 175 SLRLQSWISENVK 187
>gi|405961574|gb|EKC27358.1| hypothetical protein CGI_10003587 [Crassostrea gigas]
Length = 328
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 710 GAASGLLANQMGQYGNQYSGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSG 769
G + L+ N++ ++ + + P SC +CG GH S +CP+ + +
Sbjct: 168 GKHTSLILNKL----DEMNKTTQPKTTQGKNPGSCYTCGEPGHYSPDCPT------KENN 217
Query: 770 GGYANSFSSGAGIATSSECYKCHKTGHWARDCP 802
G + S+ +++ C+ C K GHW +DCP
Sbjct: 218 RGSTSQQSTNYSRPSNNNCFICKKEGHWMKDCP 250
>gi|413937452|gb|AFW72003.1| hypothetical protein ZEAMMB73_057715 [Zea mays]
Length = 218
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/174 (18%), Positives = 82/174 (47%), Gaps = 9/174 (5%)
Query: 285 VEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPIND 344
++ K+Y + R + P++ + + N + I + + ++ + + PR + D
Sbjct: 21 IQIDKVYELKRFRVAPSRNYYRPVDNSMMIQFTLYTQAKVVKDPPPNFPRYAYKLTSFED 80
Query: 345 V-EGMENNS-VVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCN 402
+ + ++N + +++++G+++ I + N R + L+D++ S ++TLWG+
Sbjct: 81 IGDNVDNKTYLINVLGILTEIGSLHHVGYNNSNII--RDIFLKDINNTSTKVTLWGH--Q 136
Query: 403 DDGLRLQHMCDSG-VFPILAVKAGRVSD-FNGKV-VGTISTTQLFIEPDFPEAH 453
+ ++CD P++ + G ++ F G+ + + + PD PEA
Sbjct: 137 ASSFSVDNICDENDNKPVVILFVGCLAKRFKGEAYLSATAACTWYFNPDIPEAQ 190
>gi|427784005|gb|JAA57454.1| Putative alternative splicing factor [Rhipicephalus pulchellus]
Length = 181
Score = 45.1 bits (105), Expect = 0.16, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 781 GIATSSECYKCHKTGHWARDCPSLN 805
G + ECY+C +TGHWARDCP L+
Sbjct: 92 GYQSFDECYRCRRTGHWARDCPELD 116
>gi|108864634|gb|ABA95256.2| helicase, putative [Oryza sativa Japonica Group]
Length = 1643
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 11/124 (8%)
Query: 332 IPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRS 391
+ R+QF PI M N DLIGV+S++ P + + + R L +R+ +
Sbjct: 1243 LKRRQF---PIRLSYAMTINKSQDLIGVISHVGPYDYAGKT--SSKKNRKLKIRNKDEQE 1297
Query: 392 VELTLWGNFCN--DDGLRLQHMCDSGVFPILAVKAGRVS-DFNGKVVGTIST-TQLFIEP 447
E+ LWG + D+ LQ D + ++A+ AG + + GK T S+ TQ++ +
Sbjct: 1298 QEIVLWGEYGESFDEAFVLQKSTDHKI--VVAILAGLTAGTYLGKTEATSSSATQIYFDS 1355
Query: 448 DFPE 451
D E
Sbjct: 1356 DITE 1359
>gi|357459975|ref|XP_003600269.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
gi|355489317|gb|AES70520.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
Length = 323
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 86/186 (46%), Gaps = 9/186 (4%)
Query: 221 PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
PI+ ++ IKARV +L +N + L+DS+G I + + +
Sbjct: 7 PISQISSSKPAGNIKARVVRLWKLSDFNRNTLPFSI-EMVLMDSEGSRIHASIKKTLWYK 65
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEI-FLDMTSMVQLCYEDDASIPRQQFHF 339
F ++ GK+Y + ++ H+ ++ F T + LC A + F F
Sbjct: 66 FQSEIREGKVYSFENMGVAANGGSYKTTHHPYKLNFQFGTKCLPLC---GALVSGSDFKF 122
Query: 340 RPINDVEG--MENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLW 397
PI+D+ G + + +VD+IG+++ + T +NG+ T+ + + + G ++ TL+
Sbjct: 123 VPISDIVGGSYDCDYLVDVIGMLTGVG-TEREYERNGSATKLNVIAM-EADGYKLQCTLF 180
Query: 398 GNFCND 403
G + ++
Sbjct: 181 GTYVDE 186
>gi|389845971|ref|YP_006348210.1| replication factor A [Haloferax mediterranei ATCC 33500]
gi|448616414|ref|ZP_21665124.1| replication factor A [Haloferax mediterranei ATCC 33500]
gi|388243277|gb|AFK18223.1| replication factor A [Haloferax mediterranei ATCC 33500]
gi|445751069|gb|EMA02506.1| replication factor A [Haloferax mediterranei ATCC 33500]
Length = 487
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 21/179 (11%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHY--NNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD 279
IA + P M A+V + GELR + +++ DG+V + ++ D + G IRV+ ++ +A
Sbjct: 56 IADIEPGMEDVKFLAKVVSIGELRTFERDDEDEDGQVINIEVAD-ETGRIRVSLWDGMAA 114
Query: 280 QFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHF 339
+E G + V +P + +N +E+ S ++ + DA + Q
Sbjct: 115 GAKENLEVGTVLRVGG---RPKEG-----YNGVEV-----SASKVEEDIDAEVDVQVLDT 161
Query: 340 RPINDVE-GMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLW 397
+ D+ G+ S V+L G + + R +GTE + L + D +GR + +TLW
Sbjct: 162 YRVEDLALGL---SDVNLEGTILDTGTVRTFDRDDGTEGRVSNLSIGDPTGR-IRVTLW 216
Score = 44.3 bits (103), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 22/198 (11%)
Query: 234 IKARVTAKGELRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYL 292
++ + G +R ++ G +G+V + + D G IRVT ++ AD ++E G+
Sbjct: 176 LEGTILDTGTVRTFDRDDGTEGRVSNLSIGDP-TGRIRVTLWDERAD-LVEELETGESVE 233
Query: 293 VSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNS 352
V G ++ + LE+ + V++ ED +P D+E +E
Sbjct: 234 VVDGYVRERDGS-------LELHVGSRGAVEVIDEDIEYVPE-------TTDIEALELGQ 279
Query: 353 VVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMC 412
VD+ G V + R +G++ Q R + ++D +G + + LWG + D +
Sbjct: 280 TVDIAGGVIESDGKRTFDRDDGSQGQVRNIRVKDDTG-DIRVALWGEKADTD----VDLA 334
Query: 413 DSGVFPILAVKAGRVSDF 430
D V + +K G D
Sbjct: 335 DYVVITDVQIKEGWQDDL 352
>gi|321456442|gb|EFX67550.1| hypothetical protein DAPPUDRAFT_330970 [Daphnia pulex]
Length = 200
Score = 45.1 bits (105), Expect = 0.17, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 20/132 (15%)
Query: 327 EDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRD 386
E+ A P F+F P + + EN+S+VD+IG+V + L K ET K T R
Sbjct: 43 EEAAEKPTITFNFVPFDQLPNQENDSIVDVIGLVLH------LQEKVLVET-KTTKISRS 95
Query: 387 MSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIE 446
++ V+ +L L+ + D + + VK + F + + T+S+T + I
Sbjct: 96 LTAEFVDSSL-----------LEKVADKCIVALPGVKIS--NKFGRRYLETLSSTVVQIN 142
Query: 447 PDFPEAHRLKEW 458
D E L+EW
Sbjct: 143 ADMTEVRELREW 154
>gi|448627026|ref|ZP_21671701.1| replication factor A [Haloarcula vallismortis ATCC 29715]
gi|445759654|gb|EMA10930.1| replication factor A [Haloarcula vallismortis ATCC 29715]
Length = 490
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 18/184 (9%)
Query: 222 IAALNPYMGKWTIKARVTAKGELRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQ 280
I AL T++ V +R ++ G +G+V + L D G IRVT ++ AD+
Sbjct: 165 IDALTMGQSDVTLRGLVLDTDTIRTFDRDDGSEGRVSNLTLGDE-TGRIRVTLWDDRADR 223
Query: 281 FYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFR 340
++++G + G ++ + LE+ + V +D A P
Sbjct: 224 -AEELDSGAAVEIIDGYVRERDGS-------LELHVGDQGAVDEVEDDVAFEPDAD---- 271
Query: 341 PINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNF 400
PI +V E VD+ GVV P + R +G+E Q R + ++D +G + + LWG+
Sbjct: 272 PIAEVALEET---VDIAGVVRSADPKRTFDRDDGSEGQVRNVRIQDATG-DIRVALWGDK 327
Query: 401 CNDD 404
+ D
Sbjct: 328 ADKD 331
>gi|413956456|gb|AFW89105.1| hypothetical protein ZEAMMB73_316315 [Zea mays]
Length = 286
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 29/188 (15%)
Query: 231 KWTIKARVTAK--GELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA----DQFYHQ 284
K++I RV K E R + Q HF L D +G +I + D H+
Sbjct: 46 KYSIVTRVEVKFPKEPRFRDRQ-------HFVLSDINGAKIEAITYMYETVKHFDNLLHE 98
Query: 285 VEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRP--- 341
K++ V + SL P + NF HL+ +E+ LD ++V+ ++P Q F
Sbjct: 99 KHVYKMHNV-KFSLHPGEFNFRHLNGPMELCLDQQTIVE-----PYTVPIQMAPFPKQIL 152
Query: 342 --INDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGN 399
+ D+ + N ++VD++ +V ++ M R + + D G + +WG+
Sbjct: 153 LNLADIAELPNRTLVDIMAIVVHLDTIHRTMWGPF-----RKIVIMDARGYLHIIKVWGD 207
Query: 400 FCNDDGLR 407
N + LR
Sbjct: 208 LLNKNALR 215
>gi|300681310|emb|CAZ96018.1| conserved hypothetical protein [Saccharum hybrid cultivar]
Length = 508
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Query: 286 EAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDV 345
+ GK+Y++ + + A+K++ + +L I + + VQ+ +SIP + P+ +
Sbjct: 70 DVGKVYVLKKFVVNNAKKSYRAVDRNLLINISQHTTVQVVPNPPSSIPEYIYRITPLPAI 129
Query: 346 EGME-NNSVVDLIGVVSYISPTASLMRKNGTETQK-RTLHLRDMSGRSVELTLWGN 399
+ + + D IG + + + KN + + R ++++D+S +++TLWG+
Sbjct: 130 KPVRFVYNYTDTIGYLIKYKAAHTFVPKNKEKAKTLREIYIKDLSDNVMQVTLWGD 185
>gi|296089493|emb|CBI39312.3| unnamed protein product [Vitis vinifera]
Length = 156
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 322 VQLCYEDDASIPRQQFHFRPINDVEGMEN-NSVVDLIGVVSYISPTASLMRKNGTE-TQK 379
V+ ++ IP +F F I ++ N +VD+ GVV +SPT S+ RK+ E K
Sbjct: 71 VEEASNEETFIPEAKFKFVDIEELGPYVNGKELVDVSGVVQSVSPTMSIRRKSNNEIVPK 130
Query: 380 RTLHLRDMSGRSVELTLWGNFCNDDG 405
R + + D + +SV ++LW + + G
Sbjct: 131 RDITIADKTKKSVVVSLWNDHATNVG 156
>gi|340373853|ref|XP_003385454.1| PREDICTED: uncharacterized protein C16orf73 homolog [Amphimedon
queenslandica]
Length = 494
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 68/321 (21%), Positives = 125/321 (38%), Gaps = 39/321 (12%)
Query: 209 LVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFH---FDLLDSD 265
++ + E+ +++ I L P++ + V K + + +++ G + F + DS
Sbjct: 30 MIEQREIGNKVTNIRHLQPHLSNTAVIGLVINKQAIHSFPDKKNPGAYRYKSAFTIRDSP 89
Query: 266 GGEIRVTCFNAVAD--------QFYHQVEAGKIYLVSR-----------GSLKPAQKNFN 306
I VTC+ + A + Y +E + S+ + P Q +
Sbjct: 90 SDYINVTCWGSEAYISSLSSSFKIYDIIEICNCQVGSKPVGDSEDKWSPWTPSPFQLTLS 149
Query: 307 HLHNDLEIFLDMTSMVQLCYEDDASIP-RQQFHFRPINDVEGMENN---SVVDLIGVVSY 362
H+ + ++ + Y A IP R + ++D+ N S ++++ +V
Sbjct: 150 ETHSSVSLYNGVNPEQ---YMSLAHIPLRSTSDYYILSDIHAHWQNLDGSYINILAIVGN 206
Query: 363 ISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAV 422
+ LM K G K + L D S L LW + + + L S + AV
Sbjct: 207 VGTPKQLMSKAGKNLTKCEVILFDEGCNSFSLFLW----DSELITLAQTWISKENIVFAV 262
Query: 423 --KAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGR 480
K S NG S T + PD P+AH L ++ + + S+ RD+ +
Sbjct: 263 DVKVSFDSYKNGMTGTCTSKTLITTNPDSPQAHSLYQYAQTVEMDFGSIRGDRDTTDIH- 321
Query: 481 ADIRK--TVSQIKDEGLGTKE 499
DIR TV Q+ D ++E
Sbjct: 322 -DIRDVYTVKQLSDFKYNSRE 341
>gi|395754126|ref|XP_003779713.1| PREDICTED: zinc finger CCHC domain-containing protein 13-like
[Pongo abelii]
Length = 170
Score = 44.7 bits (104), Expect = 0.20, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 742 QSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDC 801
Q C SCG +GH +C + + G + A+ CY+C K+GH AR+C
Sbjct: 110 QKCYSCGKLGHIQKDCAQV-----KCYRCGEIGHVAINCSKASQVNCYRCGKSGHLAREC 164
Query: 802 PS 803
PS
Sbjct: 165 PS 166
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,352,620,523
Number of Sequences: 23463169
Number of extensions: 597276410
Number of successful extensions: 2332637
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 1679
Number of HSP's that attempted gapping in prelim test: 2311187
Number of HSP's gapped (non-prelim): 15702
length of query: 834
length of database: 8,064,228,071
effective HSP length: 151
effective length of query: 683
effective length of database: 8,816,256,848
effective search space: 6021503427184
effective search space used: 6021503427184
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 82 (36.2 bits)