BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003281
(834 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NY74|RFA1_DANRE Replication protein A 70 kDa DNA-binding subunit OS=Danio rerio
GN=rpa1 PE=1 SV=1
Length = 601
Score = 351 bits (901), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 218/664 (32%), Positives = 357/664 (53%), Gaps = 91/664 (13%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQ ++++ + + RFR+++SDG + ML+TQ N + L V
Sbjct: 22 PILQCVNIRKI------DGGNGVSRFRVMMSDGLHTMSSFMLSTQLNPMAEQNQLATNCV 75
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
L + NV+++ R +V+++D++V+ S+++ PG + G+P
Sbjct: 76 CVLKRSVTNVLKDGRRVVVILDIEVL---------------KSADQMPGKI-GDPTPYVE 119
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
G S + P T P AR + +P+ G+ ++
Sbjct: 120 GQS----------KAPS-TAPAPTARPL---------QPQNGSDGSTY------------ 147
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARVT 239
RP A ++ + P M +P+ S+++PIA+LNPY KWTI+ARVT
Sbjct: 148 ---RPSAQSFGKKP----MAAPNTPGG---------SSKVVPIASLNPYQSKWTIRARVT 191
Query: 240 AKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLK 299
K +R ++N RGDGK+F +L+D + GEIR T FN D+F+ +E GK++ +S+G+LK
Sbjct: 192 NKSAIRTWSNSRGDGKLFSMELVD-ESGEIRATGFNNEVDKFFSLIEQGKVFYISKGTLK 250
Query: 300 PAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGV 359
A K F+ L ND E+ L+ + + C ED +P Q F I D+E E ++++D+IGV
Sbjct: 251 IANKQFSSLKNDYEMTLNGETSIIPC-EDSNDVPMLQCDFVSIADLESREKDTILDVIGV 309
Query: 360 VSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPI 419
A +M KN E KR + L DMSGR ++LT+WG+ D PI
Sbjct: 310 CKNAEDVARIMTKNSREVSKRNIQLIDMSGRVIQLTMWGSDA--------ETFDGSGQPI 361
Query: 420 LAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGK--NTQSVSISRDSLS 477
LA+K R+SDF G+ + T+ ++ + I PD PEA++L+ W++KEG + QS++ R
Sbjct: 362 LAIKGARLSDFGGRSLSTLYSSTVMINPDIPEAYKLRGWYDKEGHALDGQSMTELRGPGG 421
Query: 478 VGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVM 537
G + KT++++K+E LG +K D+ + ATIVYI+ +N Y ACP + CNKKV+
Sbjct: 422 GGNTNW-KTLAEVKNEHLGHGDKADYFSCIATIVYIRKENCLYQACP----SKDCNKKVV 476
Query: 538 NNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLK 597
+ +G + C++CD+ + YR +L I D WVT FQ+ AE ++G ++ L LK
Sbjct: 477 DQQNGMFRCEKCDKEFPDFKYRLMLSANIADFGDNQWVTCFQDTAETLLGQNSSYLGQLK 536
Query: 598 YVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDL 657
D N+ F EV ++A F ++F+ +VK ET++DE R+K TVV A+ ++ ++ ++
Sbjct: 537 --DTNEAAFDEVFQHANFNTFVFRNRVKLETYNDESRIKVTVVDAKPVDHREYSKRLIIN 594
Query: 658 MDKL 661
+ KL
Sbjct: 595 IRKL 598
>sp|Q5ZJJ2|RFA1_CHICK Replication protein A 70 kDa DNA-binding subunit OS=Gallus gallus
GN=RPA1 PE=2 SV=1
Length = 614
Score = 350 bits (898), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 227/661 (34%), Positives = 349/661 (52%), Gaps = 85/661 (12%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
PVLQV++ + + + + R+R+++SDG + MLATQ N LV L +
Sbjct: 22 PVLQVINTRAIATG------NGPPRYRVLMSDGVNTLSSFMLATQLNPLVEEERLSAHCI 75
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
++ +F N +++ R +VI+MDLDV+ + + G GNP
Sbjct: 76 CQVNRFIVNSLKDGRRVVILMDLDVL----------------KTADMVGGTVGNPVPYNE 119
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSA-SFSNPR 178
G Q + P A N PN KP+ G+ S + +A + P
Sbjct: 120 GQGQQRS-------------SAPTA-----NAAPN--KPQQQDGNLSVAGSAAPKYHAPS 159
Query: 179 PEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKARV 238
+FS+ A + +TP S+++PIA+LNPY KWTI ARV
Sbjct: 160 NQFSKASAPSSVKTPGG-------------------TQSKVVPIASLNPYQSKWTICARV 200
Query: 239 TAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSL 298
T KG++R ++N RG+GK+F +L+D + GEIR T FN AD+F+ +E K+Y ++G+L
Sbjct: 201 TQKGQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNDQADKFFPLIELNKVYYFTKGNL 259
Query: 299 KPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIG 358
K A K + + ND EI + + V C +D +P QF F I+D+E +S+VD+IG
Sbjct: 260 KTANKQYTAVKNDYEITFNNETSVVPC-DDAQHLPSVQFDFVSISDLENTPKDSIVDVIG 318
Query: 359 VV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCND-DGLRLQHMCDSGV 416
+ SY T +++ + E KR +HL D SG+ V TLWGN DG R
Sbjct: 319 ICKSYEDVTKIVVKASNREVSKRNVHLMDTSGKLVTATLWGNEAEKFDGSRQ-------- 370
Query: 417 FPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSIS--RD 474
P++A+K RVSDF G+ + +S++ + + PD PEA +L+ WF+ EG+ + SIS R
Sbjct: 371 -PVIAIKGARVSDFGGRSLSVLSSSTVVVNPDSPEAFKLRGWFDSEGQLLECASISDVRG 429
Query: 475 SLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNK 534
+ G KT+ + K E LG +K D+ + TIV+++ +N Y ACP + CNK
Sbjct: 430 GSASGVNTNWKTLYEAKSERLGQGDKADYFSCVGTIVHLRKENCMYQACP----SQDCNK 485
Query: 535 KVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLY 594
KV++ +G + C++CD+ YR +L I D WVT FQE AE I+G SA L
Sbjct: 486 KVIDQQNGLYRCEKCDREFPNFKYRMMLLVTIADSLDYQWVTCFQESAEFILGQSATFLG 545
Query: 595 SLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFI 654
LK D+N++ F EV +NA F Y FK++VK ET++DE R+K+T + + NY ++ +
Sbjct: 546 ELK--DKNEQAFEEVFQNANFNTYEFKIRVKLETYNDESRIKATALDVKPVNYREYSKRL 603
Query: 655 L 655
+
Sbjct: 604 I 604
>sp|Q8VEE4|RFA1_MOUSE Replication protein A 70 kDa DNA-binding subunit OS=Mus musculus
GN=Rpa1 PE=2 SV=1
Length = 623
Score = 341 bits (874), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 222/661 (33%), Positives = 346/661 (52%), Gaps = 74/661 (11%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P+LQV++++ + + ++ R+R+++SDG + MLATQ N LV G L V
Sbjct: 23 PILQVINIRPISTG------NRSPRYRLLMSDGLNTLSSFMLATQLNTLVEGGQLASNCV 76
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNAT 119
++ KF N +++ R +V++MDL+V+ S E G GNP
Sbjct: 77 CQVHKFIVNTLKDGRKVVVLMDLEVM----------------KSAEDVGLKIGNPVPYNE 120
Query: 120 GVSLQHHNNTRVSQLPGDTDAVPAARHVGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRP 179
G + + Q AVP+ S P KP+ GS + +A
Sbjct: 121 G-----YGQQQQQQQQQQQQAVPSP---ASAATPPASKPQPQNGSLGMGSTAAKAYGASK 172
Query: 180 EFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSE-VPSRIIPIAALNPYMGKWTIKARV 238
F +P A GL+ S S+++PIA+L PY KWTI ARV
Sbjct: 173 PFGKP--------------------AGTGLLQPSGGTQSKVVPIASLTPYQSKWTICARV 212
Query: 239 TAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSL 298
T K ++R ++N RG+GK+F +L+D + GEIR T FN D+F+ +E K+Y S+G+L
Sbjct: 213 TNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGAL 271
Query: 299 KPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIG 358
K A K F+ + ND E+ + + V C ED +P QF F I D+E +++VD+IG
Sbjct: 272 KIANKQFSAVKNDYEMTFNNETSVLPC-EDGHHLPTVQFDFTGIGDLESKAKDALVDIIG 330
Query: 359 VV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCND-DGLRLQHMCDSGV 416
+ SY ++ N E KR ++L DMSG+ V TLWG + DG R
Sbjct: 331 ICKSYEDSIKITVKSNNREVAKRNIYLMDMSGKVVTTTLWGEDADKFDGSRQ-------- 382
Query: 417 FPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSIS--RD 474
P++A+K RVSDF G+ + +S++ + + PD PEA++L+ WF+ EG+ VSIS R
Sbjct: 383 -PVMAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYKLRGWFDSEGQALDGVSISDHRS 441
Query: 475 SLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNK 534
+ G KT+ + K E LG +K D+ + A +V+++ +N Y ACP + CNK
Sbjct: 442 GGAGGGNTNWKTLHEAKSENLGQGDKADYFSTVAAVVFLRKENCMYQACPT----QDCNK 497
Query: 535 KVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLY 594
KV++ +G + C++CD+ YR IL I D WVT FQE AE I+G + L
Sbjct: 498 KVIDQQNGLYRCEKCDREFPNFKYRMILSANIADFQENQWVTCFQESAEAILGQNTMYLG 557
Query: 595 SLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFI 654
LK ++N++ F EV +NA F + F+++VK ET++DE R+K+TV+ + ++ R +
Sbjct: 558 ELK--EKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVMDVKPVDFRDYGRRL 615
Query: 655 L 655
+
Sbjct: 616 I 616
>sp|P27694|RFA1_HUMAN Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens
GN=RPA1 PE=1 SV=2
Length = 616
Score = 337 bits (863), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 180/443 (40%), Positives = 267/443 (60%), Gaps = 21/443 (4%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
S+++PIA+L PY KWTI ARVT K ++R ++N RG+GK+F +L+D + GEIR T FN
Sbjct: 182 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNE 240
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
D+F+ +E K+Y S+G+LK A K F + ND E+ + + V C EDD +P Q
Sbjct: 241 QVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC-EDDHHLPTVQ 299
Query: 337 FHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F I+D+E +S+VD+IG+ SY T +R N E KR ++L D SG+ V T
Sbjct: 300 FDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTAT 359
Query: 396 LWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
LWG + DG R P+LA+K RVSDF G+ + +S++ + PD PEA++
Sbjct: 360 LWGEDADKFDGSRQ---------PVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYK 410
Query: 455 LKEWFEKEGKNTQSVSISR-DSLSVGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVY 512
L+ WF+ EG+ VSIS S VG ++ KT+ ++K E LG +KPD+ + AT+VY
Sbjct: 411 LRGWFDAEGQALDGVSISDLKSGGVGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVY 470
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
++ +N Y ACP + CNKKV++ +G + C++CD YR IL I D
Sbjct: 471 LRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQEN 526
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
WVT FQE AE I+G +A L LK D+N++ F EV +NA F ++F+++VK ET++DE
Sbjct: 527 QWVTCFQESAEAILGQNAAYLGELK--DKNEQAFEEVFQNANFRSFIFRVRVKVETYNDE 584
Query: 633 QRVKSTVVKAERYNYSSETRFIL 655
R+K+TV+ + +Y R ++
Sbjct: 585 SRIKATVMDVKPVDYREYGRRLV 607
>sp|Q5R7Q4|RFA1_PONAB Replication protein A 70 kDa DNA-binding subunit OS=Pongo abelii
GN=RPA1 PE=2 SV=1
Length = 616
Score = 333 bits (855), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 179/443 (40%), Positives = 265/443 (59%), Gaps = 21/443 (4%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
S+++PIA+L PY KWTI ARVT K ++R ++N RG+ K+F +L+D + GEIR T FN
Sbjct: 182 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEEKLFSLELVD-ESGEIRATAFNE 240
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
D+F+ +E K+Y S+G+LK A K F + ND E+ + + V C EDD +P Q
Sbjct: 241 QVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC-EDDHHLPTVQ 299
Query: 337 FHFRPINDVEGMENNSVVDLIGVV-SYISPTASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F I+D+E +S+VD+IG+ SY T +R N E KR ++L D SG+ V T
Sbjct: 300 FDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTAT 359
Query: 396 LWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
LWG + DG R P+LA+K RVSDF G+ + +S++ + PD PEA++
Sbjct: 360 LWGEDADKFDGSRQ---------PVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYK 410
Query: 455 LKEWFEKEGKNTQSVSISR-DSLSVGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVY 512
L+ WF+ EG+ VSIS S VG + KT+ ++K E LG +KPD+ + AT+VY
Sbjct: 411 LRGWFDAEGQALDGVSISDLKSGGVGGGNTNWKTLYEVKSENLGQGDKPDYFSSVATVVY 470
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
++ +N Y ACP + CNKKV++ +G + C++CD YR IL I D
Sbjct: 471 LRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQEN 526
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
WVT FQE AE I+G +A L LK D+N++ F EV +NA F ++F+++VK ET++DE
Sbjct: 527 QWVTCFQESAEAILGQNAAYLGELK--DKNEQAFEEVFQNANFRSFIFRVRVKVETYNDE 584
Query: 633 QRVKSTVVKAERYNYSSETRFIL 655
R+K+TV+ + +Y R ++
Sbjct: 585 SRIKATVMDVKPVDYREYGRRLV 607
>sp|Q01588|RFA1_XENLA Replication protein A 70 kDa DNA-binding subunit OS=Xenopus laevis
GN=rpa1 PE=1 SV=1
Length = 609
Score = 321 bits (823), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 170/443 (38%), Positives = 267/443 (60%), Gaps = 21/443 (4%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
S+++PIA+LNPY KWT++ARVT KG++R ++N RG+GK+F +++D + GEIR T FN
Sbjct: 173 SKVVPIASLNPYQSKWTVRARVTNKGQIRTWSNSRGEGKLFSIEMVD-ESGEIRATAFNE 231
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
AD+F+ +E K+Y S+G+LK A K + + ND E+ + + V C +D A +P Q
Sbjct: 232 QADKFFSIIEVNKVYYFSKGTLKIANKQYTSVKNDYEMTFNSETSVIPC-DDSADVPMVQ 290
Query: 337 FHFRPINDVEGMENNSVVDLIGVVSYISP-TASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F I ++E ++V+D+IGV + T ++ N E KR++HL D SG+ V T
Sbjct: 291 FEFVSIGELESKNKDTVLDIIGVCKNVEEVTKVTIKSNNREVSKRSIHLMDSSGKVVSTT 350
Query: 396 LWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
LWG + DG R P++A+K R+SDF G+ + +S++ + I PD PEA +
Sbjct: 351 LWGEDADKFDGSRQ---------PVVAIKGARLSDFGGRSLSVLSSSTVMINPDIPEAFK 401
Query: 455 LKEWFEKEGKNTQSVSI--SRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVY 512
L+ WF+ EG+ + SI SR + G K++ ++K+E LG EK D+ T ATIVY
Sbjct: 402 LRAWFDSEGQVVEGTSISESRGGGTGGGNTNWKSLLEVKNENLGHGEKADYFTSVATIVY 461
Query: 513 IKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGL 572
++ +N Y ACP + CNKKV++ +G + C++C++ YR IL I D
Sbjct: 462 LRKENCLYQACP----SQDCNKKVIDQQNGLFRCEKCNKEFPNFKYRLILSANIADFGEN 517
Query: 573 TWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDE 632
W+T FQE AE I+G +A L LK ++N++ + EV +NA F Y F+ +VK ET++DE
Sbjct: 518 QWITCFQESAESILGQNATYLGELK--EKNEQAYDEVFQNANFRSYTFRARVKLETYNDE 575
Query: 633 QRVKSTVVKAERYNYSSETRFIL 655
R+K+T V + ++ +R ++
Sbjct: 576 SRIKATAVDVKPVDHKEYSRRLI 598
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 11/101 (10%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P LQV++++ + + R+R+++SDG + MLATQ N LV + LL +
Sbjct: 23 PTLQVINIRPI------NTGNGPPRYRLLMSDGLNTLSSFMLATQLNSLVDNNLLATNCI 76
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVIIDK---CDPIGKPVP 97
++++F N +++ R ++IVM+LDV+ IG P P
Sbjct: 77 CQVSRFIVNNLKDGRRVIIVMELDVLKSADLVMGKIGNPQP 117
>sp|Q5FW17|RFA1_XENTR Replication protein A 70 kDa DNA-binding subunit OS=Xenopus
tropicalis GN=rpa1 PE=2 SV=1
Length = 609
Score = 320 bits (820), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 169/442 (38%), Positives = 265/442 (59%), Gaps = 20/442 (4%)
Query: 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
S+++PIA+LNPY KWT++ARVT KG++R ++N RG+GK+F +++D + GEIR T FN
Sbjct: 174 SKVVPIASLNPYQSKWTVRARVTNKGQIRTWSNSRGEGKLFSIEMVD-ESGEIRATAFNE 232
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQ 336
AD+F+ +E K+Y S+G+LK A K + + ND E+ + + V C +D A +P Q
Sbjct: 233 QADKFFSLIEVNKVYYFSKGTLKIANKQYTSVKNDYEMTFNSETSVIPC-DDSADVPMVQ 291
Query: 337 FHFRPINDVEGMENNSVVDLIGVVSYISP-TASLMRKNGTETQKRTLHLRDMSGRSVELT 395
F F PI ++E ++V+D+IG+ T +R N E KR ++L D SG+ V T
Sbjct: 292 FEFVPIGELESKNKDTVLDIIGICKNAEEVTKVTIRSNNREVSKRNINLMDSSGKVVSTT 351
Query: 396 LWGNFCND-DGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHR 454
LWG + DG R P++A+K R+SDF G+ + +S++ + I PD PEA +
Sbjct: 352 LWGEDADKFDGSRQ---------PVVAIKGARLSDFGGRSLSVLSSSTVMINPDIPEAFK 402
Query: 455 LKEWFEKEGKNTQSVSISRDSLSVGRADIR-KTVSQIKDEGLGTKEKPDWITVSATIVYI 513
L+ WF+ EG+ + SIS G + K++ ++K E LG EK D+ T ATIVY+
Sbjct: 403 LRAWFDSEGQVVEGTSISESRGGTGGGNTNWKSLLEVKTENLGHGEKADYFTSVATIVYL 462
Query: 514 KCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLT 573
+ +N Y ACP + CNKKV++ +G + C++CD+ YR IL I D
Sbjct: 463 RKENCLYQACP----SQDCNKKVIDQQNGLFRCEKCDKEFPNYKYRLILSANIADFGENQ 518
Query: 574 WVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQ 633
W+T FQE AE I+G +A L LK ++N++ + EV +NA F Y F+++VK ET++DE
Sbjct: 519 WITCFQESAESILGQNATYLGELK--EKNEQAYDEVFQNANFRSYTFRIRVKLETYNDES 576
Query: 634 RVKSTVVKAERYNYSSETRFIL 655
R+K+T + + ++ +R ++
Sbjct: 577 RIKATAMDVKPVDHKEYSRRLI 598
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 52/86 (60%), Gaps = 8/86 (9%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSV 60
P LQV++++ + + R+R+++SDG + MLATQ N LV + LL +
Sbjct: 23 PTLQVINIRSI------NTGNGPPRYRLLMSDGLNTLSSFMLATQLNFLVDNNLLATNCI 76
Query: 61 VRLTKFTCNVIQN-RMIVIVMDLDVI 85
++++F N +++ R ++IVM+++V+
Sbjct: 77 CQVSRFIVNNLKDGRRVIIVMEMEVL 102
>sp|P22336|RFA1_YEAST Replication factor A protein 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFA1 PE=1 SV=1
Length = 621
Score = 302 bits (774), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 186/645 (28%), Positives = 322/645 (49%), Gaps = 88/645 (13%)
Query: 29 MVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTKFTCNVIQNR--MIVIVMDLDVII 86
+++SDG + +L Q S LQ G ++R+ +++ R +++V D +++
Sbjct: 48 IMISDGIYHMKALLRNQAASKFQSMELQRGDIIRVIIAEPAIVRERKKYVLLVDDFELVQ 107
Query: 87 DKCDPIGKPVPAQRPSSNEQPGSVTGNPQSNATGVSLQHHNNTRVSQLPGDTDAVPAARH 146
+ D + + +E P + +G +Q VP H
Sbjct: 108 SRADMVNQTSTFLDNYFSEHPNETLKDEDITDSG--------NVANQTNASNAGVPDMLH 159
Query: 147 VGSNLPPNYFKPEVGAGSGSFSNQSASFSNPRPEFSRPYASNYARTPQAPYMQSPSMYAN 206
SNL N K F+N+ NP + +RP
Sbjct: 160 SNSNLNANERK---------FANE-----NPNSQKTRP---------------------- 183
Query: 207 RGLVGKSEVPSRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDG 266
I I L+PY WTIKARV+ KGE++ ++NQRGDGK+F+ + LD+
Sbjct: 184 ------------IFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDT-S 230
Query: 267 GEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCY 326
GEIR T FN A +F ++ GK+Y VS+ L+PA+ F +L + E+ LD ++++ C+
Sbjct: 231 GEIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECF 290
Query: 327 EDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRD 386
D++++P+ F+F ++ ++ E NS VD++G++ I+P L + G + +R + + D
Sbjct: 291 -DESNVPKTHFNFIKLDAIQNQEVNSNVDVLGIIQTINPHFELTSRAGKKFDRRDITIVD 349
Query: 387 MSGRSVELTLWGNFCNDDGLRLQHMCDSGV--FPILAVKAGRVSDFNGKVVGTISTTQLF 444
SG S+ + LW Q D + + A+K RV+DF GK + ++ L
Sbjct: 350 DSGFSISVGLWN----------QQALDFNLPEGSVAAIKGVRVTDFGGKSLSMGFSSTLI 399
Query: 445 IEPDFPEAHRLKEWFEKEGKNTQSVSISRD---------SLSVGRADIRKTVSQIKDEGL 495
P+ PEA+ LK W++ +G+N +++ ++ SL+ A R T+++ + E L
Sbjct: 400 PNPEIPEAYALKGWYDSKGRNANFITLKQEPGMGGQSAASLTKFIAQ-RITIARAQAENL 458
Query: 496 GTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVE 555
G EK D+ +V A I ++K DNF Y AC + CNKKV+ DG W C++CD +
Sbjct: 459 GRSEKGDFFSVKAAISFLKVDNFAYPAC----SNENCNKKVLEQPDGTWRCEKCDTNNAR 514
Query: 556 CDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATF 615
++RYIL I D T W+T F + A++++G+ A L SLK D N+ F ++ ++
Sbjct: 515 PNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLKEEDPNE--FTKITQSIQM 572
Query: 616 TKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDK 660
+Y F+++ +E+T++D+ R++ TV NY +E ++ D + K
Sbjct: 573 NEYDFRIRAREDTYNDQSRIRYTVANLHSLNYRAEADYLADELSK 617
>sp|Q92372|RFA1_SCHPO Replication factor A protein 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ssb1 PE=1 SV=1
Length = 609
Score = 278 bits (712), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 143/445 (32%), Positives = 250/445 (56%), Gaps = 21/445 (4%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
I PI L+PY KWTI+ARVT K E++H++NQRG+GK+F +LLD + GEIR T FN
Sbjct: 179 IYPIEGLSPYQNKWTIRARVTNKSEVKHWHNQRGEGKLFSVNLLD-ESGEIRATGFNDQV 237
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
D FY ++ G +Y +SR + A+K + ++ N+ E+ + + ++ ED ++P +F
Sbjct: 238 DAFYDILQEGSVYYISRCRVNIAKKQYTNVQNEYELMFERDTEIRKA-EDQTAVPVAKFS 296
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGTETQKRTLHLRDMSGRSVELTLW 397
F + +V + ++V+D+IGV+ + P + R KR + + D +G + +TLW
Sbjct: 297 FVSLQEVGDVAKDAVIDVIGVLQNVGPVQQITSRATSRGFDKRDITIVDQTGYEMRVTLW 356
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLKE 457
G + + + ILA K +V+DF G+ + ++++ + ++PD E+H LK
Sbjct: 357 GKTAIEFSVSEE--------SILAFKGVKVNDFQGRSLSMLTSSTMSVDPDIQESHLLKG 408
Query: 458 WFEKEGKNTQSVS---ISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIK 514
W++ +G+ + IS + GR+ RK +++++ E LG E PD+ ++ TIVYI+
Sbjct: 409 WYDGQGRGQEFAKHSVISSTLSTTGRSAERKNIAEVQAEHLGMSETPDYFSLKGTIVYIR 468
Query: 515 CDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTW 574
N Y ACP CNKKV + G G W C++C++ YRYI+ + DHTG W
Sbjct: 469 KKNVSYPACPAA----DCNKKVFDQG-GSWRCEKCNKEYDAPQYRYIITIAVGDHTGQLW 523
Query: 575 VTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQR 634
+ F + + IM +A +L L+ D+N F + A + Y+F+ + K++ F E R
Sbjct: 524 LNVFDDVGKLIMHKTADELNDLQENDEN--AFMNCMAEACYMPYIFQCRAKQDNFKGEMR 581
Query: 635 VKSTVVKAERYNYSSETRFILDLMD 659
V+ TV+ + ++ E++ +++ ++
Sbjct: 582 VRYTVMSINQMDWKEESKRLINFIE 606
Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 70/128 (54%), Gaps = 15/128 (11%)
Query: 2 PVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVV 61
P+LQV+ +K + S +R+R+VLSD Q ML+TQ N LV LQ G+ V
Sbjct: 25 PILQVLTVKELNSNPTS---GAPKRYRVVLSDSINYAQSMLSTQLNHLVAENKLQKGAFV 81
Query: 62 RLTKFTCNVIQNRMIVIVMDLDVIIDK--CDPIGKP-----VPAQRPSSNEQPGSVTGNP 114
+LT+FT NV++ R I+IV+ L+V+ + D IG P V A R NEQ N
Sbjct: 82 QLTQFTVNVMKERKILIVLGLNVLTELGVMDKIGNPAGLETVDALRQQQNEQ-----NNA 136
Query: 115 QSNATGVS 122
+ TG+S
Sbjct: 137 SAPRTGIS 144
>sp|Q24492|RFA1_DROME Replication protein A 70 kDa DNA-binding subunit OS=Drosophila
melanogaster GN=RpA-70 PE=1 SV=1
Length = 603
Score = 270 bits (689), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 154/467 (32%), Positives = 255/467 (54%), Gaps = 19/467 (4%)
Query: 199 QSPSMYANRGLVGKSEVPSRII-PIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVF 257
+ PS N +V S + S + PI++L+PY KW IKARVT+K +R ++N RG+GK+F
Sbjct: 145 KEPSHNNNNNIVMNSSINSGMTHPISSLSPYQNKWVIKARVTSKSGIRTWSNARGEGKLF 204
Query: 258 HFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLD 317
DL+D + GEIR T F D+FY ++ +Y +S+ LKPA K ++ L+N E+
Sbjct: 205 SMDLMD-ESGEIRATAFKEQCDKFYDLIQVDSVYYISKCQLKPANKQYSSLNNAYEMTFS 263
Query: 318 MTSMVQLCYE-DDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLM-RKNGT 375
++VQLC + DD IP +++ PI+DV GMEN + VD IG+ + S + R
Sbjct: 264 GETVVQLCEDTDDDPIPEIKYNLVPISDVSGMENKAAVDTIGICKEVGELQSFVARTTNK 323
Query: 376 ETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVV 435
E +KR + L DMS ++ LTLWG DD + D V P++ VK R+++FNG
Sbjct: 324 EFKKRDITLVDMSNSAISLTLWG----DDAVNF----DGHVQPVILVKGTRINEFNGGKS 375
Query: 436 GTISTTQLF-IEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEG 494
++ + I PD PEAH+L+ WF+ G ++ + +S + + T+ +
Sbjct: 376 LSLGGGSIMKINPDIPEAHKLRGWFDNGGGDSVANMVSARTGGGSFSTEWMTLKDARARN 435
Query: 495 LGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVV 554
LG+ +KPD+ A + +K +N Y ACP CNKKV++ G+ ++ C++C+
Sbjct: 436 LGSGDKPDYFQCKAVVHIVKQENAFYRACP----QSDCNKKVVDEGNDQFRCEKCNALFP 491
Query: 555 ECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNAT 614
YR ++ I D T WV++F E E+++G +++++ + ++ + K ++
Sbjct: 492 NFKYRLLINMSIGDWTSNRWVSSFNEVGEQLLGHTSQEVG--EALENDPAKAEQIFSALN 549
Query: 615 FTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKL 661
FT ++FKL+ K E + D R K TV N+ + +L + +L
Sbjct: 550 FTSHIFKLRCKNEVYGDMTRNKLTVQSVAPINHKEYNKHLLKELQEL 596
>sp|Q23696|RFA1_CRIFA Replication factor A 51 kDa subunit OS=Crithidia fasciculata
GN=RPA1 PE=1 SV=1
Length = 467
Score = 207 bits (526), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 141/447 (31%), Positives = 230/447 (51%), Gaps = 39/447 (8%)
Query: 218 RIIPIAALNPYMG-KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA 276
+I PI +L P++G KW I+ARV K ++R +N GK+F F L+D + IR T FN
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVADKSDIRTWNKPTSQGKLFSFTLID-ESAAIRATVFND 66
Query: 277 VADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDD--ASIPR 334
D F V G++Y S G +K A + F++++ND E+ D S V L +D A++P
Sbjct: 67 AVDTFEPLVVNGQVYYFSGGQVKNANRRFSNVNNDYELTFDRASEVILARQDSSAAALPM 126
Query: 335 QQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKN-GTETQKRTLHLRDMSGRSVE 393
Q+++F PI ++ E S+VD++GVV + +S+ +K+ G E KR + + DMS +VE
Sbjct: 127 QRYNFVPIELLKQREVGSLVDVLGVVLKVDEISSITQKSTGRELIKRNVKIGDMSA-AVE 185
Query: 394 LTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEP-DFPEA 452
+T W ND+ + V ++A++ +V F+G + + T++ + P D P+
Sbjct: 186 VTFW----NDEA----KAWNYPVGTVVALRQLKVGSFDGVTLSSTYQTKIDVNPADLPDV 237
Query: 453 HRLKEWFEKE-GKNTQSVS----ISRDSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVS 507
+L W+ G N S+S + RK + +I+ EG+G KP+++ V
Sbjct: 238 KKLATWYVSTGGANVVSLSSQGLGAGGGGGGEGNRGRKYLDEIQSEGIGRGAKPEYVDVR 297
Query: 508 ATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGD--GRWHCDRCDQSVVECDYRYILQFQ 565
+Y K D Y ACP CNKKV G R+ C++CD +VV RY++ Q
Sbjct: 298 CVPIYFKQDAQWYDACPT------CNKKVTEEGAQGDRFRCEKCDATVVPTQ-RYLVSIQ 350
Query: 566 IQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTK-YLFKLKV 624
+ D+ W+T F E E GM A + LK Q D + + A + + +L+V
Sbjct: 351 VTDNVSQVWLTLFNEAGVEFFGMEASE---LKRRAQEDPLYIAKLAQARMNRPVVMRLRV 407
Query: 625 KEETFS------DEQRVKSTVVKAERY 645
KEET + + R++ +VV+ +
Sbjct: 408 KEETNANAMTGEESDRLRMSVVRISEF 434
>sp|Q19537|RFA1_CAEEL Probable replication factor A 73 kDa subunit OS=Caenorhabditis
elegans GN=rpa-1 PE=1 SV=1
Length = 655
Score = 183 bits (464), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 135/490 (27%), Positives = 244/490 (49%), Gaps = 27/490 (5%)
Query: 177 PRPEFSRPYASNYARTPQAPYMQSPSMYANRGLVGKSEVPSRIIPIAALNPYMGKWTIKA 236
P+ EF + N A P+A ++ A R S ++PIA + PY+ + I
Sbjct: 184 PKREFGEEASYNRAAAPEATRARAVPPPARRT---ASNTERGVMPIAMVTPYVSNFKIHG 240
Query: 237 RVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG 296
V+ K E+R + + + KVF+F++ DS+G IR T FN VA+ Y + Y +S G
Sbjct: 241 MVSRKEEIRTFPAK--NTKVFNFEITDSNGDTIRCTAFNEVAESLYTTITENLSYYLSGG 298
Query: 297 SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDL 356
S+K A K FN+ +D EI L S+++ E A+ P+ + ++ G ++D+
Sbjct: 299 SVKQANKKFNNTGHDYEITLRSDSIIEAGGELLAA-PKLILKRVKLGEIAGYA-GQLIDV 356
Query: 357 IGVVSYISPTAS-LMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSG 415
+ VV + P A+ K G KR + L D SG V LTLWG+ + + D
Sbjct: 357 LVVVEKMDPEATEFTSKAGKSLIKREMELIDESGALVRLTLWGDEAT------KALVDDY 410
Query: 416 VFPILAVKAGRVSDFNGKV-VGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRD 474
V ++A K +FNG +GT S T++ P+ L +W+ T+ +S+
Sbjct: 411 VQKVIAFKGVIPREFNGGFSLGTGSATRIISVPEIAGVSELYDWYANVKPTTEVKMMSQ- 469
Query: 475 SLSVGRADIRKTVSQIKDEGLGT-KEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCN 533
+ G + +T++ +++ G +K D+ TV A I + N Y C C
Sbjct: 470 -AAGGSNEAPRTIAGLQEMQFGKDSDKGDYATVKAMITRVNPTNALYRGC----ASEGCQ 524
Query: 534 KKVM-NNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKD 592
KK++ NGD + C++C++++ + + Y++QF++ D TG +VTAF + A +I+G SA +
Sbjct: 525 KKLVGENGD--YRCEKCNKNMNKFKWLYMMQFELSDETGQVYVTAFGDSAAKIVGKSAAE 582
Query: 593 LYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETR 652
L L D++ +++ + F +++L+ K +++++E R K TV + N
Sbjct: 583 LGELH--DESPDEYNAIFERLQFVPKMWRLRCKMDSYNEEVRQKMTVYGVDDVNQDKYIE 640
Query: 653 FILDLMDKLK 662
+ ++++++
Sbjct: 641 NLKQMIEQMQ 650
>sp|O97472|RFA1_CAEBR Probable replication factor A 73 kDa subunit OS=Caenorhabditis
briggsae GN=rpa-1 PE=3 SV=1
Length = 658
Score = 179 bits (454), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 126/447 (28%), Positives = 231/447 (51%), Gaps = 22/447 (4%)
Query: 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA 278
+IPIA + PY+ + I V+ K +++ N + K+F+F++ DS+G IR T FN A
Sbjct: 223 VIPIAMVTPYVNNFRIHGMVSRKEDIK--NIPAKNMKIFNFEITDSNGDTIRCTAFNETA 280
Query: 279 DQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFH 338
+ F+ + Y +S GS++ A K FN+ +D EI L S+V+ E A+ P+
Sbjct: 281 ESFHSTITENLSYYLSGGSVRQANKKFNNTGHDYEITLRNDSVVEAGGELLAA-PKLNLK 339
Query: 339 FRPINDVEGMENNSVVDLIGVVSYISPTAS-LMRKNGTETQKRTLHLRDMSGRSVELTLW 397
+ ++ G ++D++ +V + A+ K G KR + L D S V LTLW
Sbjct: 340 RVSLAEIAG-HCGEMIDVLVIVEKMDAEATEFTSKAGKTLTKREMELIDESQALVRLTLW 398
Query: 398 GNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKV-VGTISTTQLFIEPDFPEAHRLK 456
G D+ ++ D ++A K +FNG +GT S T++ P+ L
Sbjct: 399 G----DEAIKAN--VDDYHGKVIAFKGVIPREFNGGYSLGTGSGTRIIPVPEISGVSELY 452
Query: 457 EWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGT-KEKPDWITVSATIVYIKC 515
+W+ E +++ IS+ S G ++ +T++ +++ G +K D+ +V A I I
Sbjct: 453 DWYTTEKPHSELKLISQ--TSGGMSEAPRTIAGLQEMQFGKDSDKGDYASVKAMITRINP 510
Query: 516 DNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWV 575
++ Y C C KKV+ + DG + C++C++S+ + + Y++QF++ D TG +V
Sbjct: 511 NSALYKGC----ASEGCQKKVIES-DGEYRCEKCNKSMNKFKWLYMMQFELSDETGQVYV 565
Query: 576 TAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRV 635
TAF + A +++G +A+++ LK D+N ++ F +++L+ K ET+++E R
Sbjct: 566 TAFGDSAAKVVGKTAQEVGDLK--DENLNEYNATFERLQFVPKMWRLRCKMETYNEEVRQ 623
Query: 636 KSTVVKAERYNYSSETRFILDLMDKLK 662
K TV E N + +L++++K
Sbjct: 624 KMTVFSVEEVNQDKYIENLKELIEQMK 650
>sp|Q94901|LARK_DROME RNA-binding protein lark OS=Drosophila melanogaster GN=lark PE=1
SV=1
Length = 352
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 12/50 (24%)
Query: 781 GIATSSECYKCHKTGHWARDCPSLNAAPPAYGSSGIG------ISAAGYR 824
G+ +CY+C ++GHW+++CP L YGS+G G +SA GYR
Sbjct: 163 GMGDPEQCYRCGRSGHWSKECPRL------YGSAGGGREPPSPLSAGGYR 206
>sp|Q8T8R1|Y3800_DROME CCHC-type zinc finger protein CG3800 OS=Drosophila melanogaster
GN=CG3800 PE=1 SV=1
Length = 165
Score = 42.7 bits (99), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 741 RQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARD 800
R+ C C GH + CP + +G G+ S A + CY+C+KTGHW R+
Sbjct: 54 REKCYKCNQFGHFARACPEEAERCYRCNGIGH---ISKDCTQADNPTCYRCNKTGHWVRN 110
Query: 801 CP 802
CP
Sbjct: 111 CP 112
Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 17/79 (21%)
Query: 737 TSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGH 796
T A +C C GH NCP ++ G T+ CYKC++TGH
Sbjct: 91 TQADNPTCYRCNKTGHWVRNCPEAVNERG-----------------PTNVSCYKCNRTGH 133
Query: 797 WARDCPSLNAAPPAYGSSG 815
+++CP + G SG
Sbjct: 134 ISKNCPETSKTCYGCGKSG 152
>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=4 SV=1
Length = 271
Score = 42.0 bits (97), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 705 NNSNAGAASGLLANQMGQYGNQYSGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMSGP 764
N + +GAA + + G+ G+ A +A C CG GH S +CPS G
Sbjct: 60 NEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGG- 118
Query: 765 GQSSGGGYANSFS-SGA--GIATSSECYKCHKTGHWARDCP 802
S GGY SGA G + CYKC GH +RDCP
Sbjct: 119 ---SRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCP 156
Score = 41.6 bits (96), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 46/98 (46%), Gaps = 29/98 (29%)
Query: 707 SNAGAASGLLANQMGQYGNQ--YSGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMSGP 764
S+ G + G + G+ G Q YSG R +C CG GH S +CP+
Sbjct: 114 SSQGGSRGGYGQKRGRSGAQGGYSGDR-----------TCYKCGDAGHISRDCPN----- 157
Query: 765 GQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCP 802
GQ GGY SGAG T CYKC GH +RDCP
Sbjct: 158 GQ---GGY-----SGAGDRT---CYKCGDAGHISRDCP 184
Score = 40.4 bits (93), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 16/70 (22%)
Query: 737 TSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGH 796
+ A ++C CG GH S +CP+ GQ GGY SGAG +CYKC ++GH
Sbjct: 163 SGAGDRTCYKCGDAGHISRDCPN-----GQ---GGY-----SGAG---DRKCYKCGESGH 206
Query: 797 WARDCPSLNA 806
+R+CPS +
Sbjct: 207 MSRECPSAGS 216
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 17/66 (25%)
Query: 738 SAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHW 797
+A +C CG GH S +CP NS GA A ECYKC + GH
Sbjct: 66 AAGAMTCFRCGEAGHMSRDCP---------------NSAKPGA--AKGFECYKCGQEGHL 108
Query: 798 ARDCPS 803
+RDCPS
Sbjct: 109 SRDCPS 114
Score = 35.4 bits (80), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 14/73 (19%)
Query: 732 LPAAG-TSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYK 790
P+AG T + ++C CG GH S CP A G+ CYK
Sbjct: 211 CPSAGSTGSGDRACYKCGKPGHISRECPE-------------AGGSYGGSRGGGDRTCYK 257
Query: 791 CHKTGHWARDCPS 803
C + GH +RDCPS
Sbjct: 258 CGEAGHISRDCPS 270
>sp|O42395|CNBP_CHICK Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2
SV=1
Length = 172
Score = 41.6 bits (96), Expect = 0.024, Method: Composition-based stats.
Identities = 13/20 (65%), Positives = 19/20 (95%)
Query: 784 TSSECYKCHKTGHWARDCPS 803
+S+EC+KC +TGHWAR+CP+
Sbjct: 2 SSNECFKCGRTGHWARECPT 21
Score = 37.7 bits (86), Expect = 0.36, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 739 AARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWA 798
A Q C SCG GH +C + +G N + + CY+C ++GH A
Sbjct: 109 ADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKT-----SEVNCYRCGESGHLA 163
Query: 799 RDC 801
R+C
Sbjct: 164 REC 166
>sp|Q3T0Q6|CNBP_BOVIN Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2
SV=1
Length = 170
Score = 40.4 bits (93), Expect = 0.059, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 19/20 (95%)
Query: 784 TSSECYKCHKTGHWARDCPS 803
+S+EC+KC ++GHWAR+CP+
Sbjct: 2 SSNECFKCGRSGHWARECPT 21
Score = 37.7 bits (86), Expect = 0.36, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 739 AARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWA 798
A Q C SCG GH +C + +G N + + CY+C ++GH A
Sbjct: 107 ADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKT-----SEVNCYRCGESGHLA 161
Query: 799 RDC 801
R+C
Sbjct: 162 REC 164
Score = 35.0 bits (79), Expect = 2.4, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 740 ARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWAR 799
+ C CG GH + CP+ G F S + CY+C ++GH A+
Sbjct: 2 SSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSS---SLPDICYRCGESGHLAK 58
Query: 800 DC 801
DC
Sbjct: 59 DC 60
Score = 33.9 bits (76), Expect = 6.1, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 24/65 (36%)
Query: 737 TSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGH 796
+S+ C CG GH + +C GG+ CY C K GH
Sbjct: 40 SSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGH 99
Query: 797 WARDC 801
ARDC
Sbjct: 100 LARDC 104
>sp|B2GV47|CX057_RAT Uncharacterized protein CXorf57 homolog OS=Rattus norvegicus PE=2
SV=1
Length = 844
Score = 40.4 bits (93), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 80/173 (46%), Gaps = 24/173 (13%)
Query: 236 ARVTAKGELRHY---NNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYL 292
R+ K +LR+Y N + + + ++ DS G + V +NA+ ++Y + G I L
Sbjct: 239 VRILHKSKLRYYGKPNKKMIEPYQTYLEVADS-SGMVSVIMWNALCPEWYKSLRVGLILL 297
Query: 293 VSRGSLK----------PAQKNFNHLHNDLEIFLDM----TSMVQLC---YEDDASIPRQ 335
+ S+K P L + +EI L++ T++V + + + +P+
Sbjct: 298 LQDYSVKKSYPLRIQPDPVDPQMK-LISTMEICLNLRDPPTNIVIIPEKQLKSEWKLPKL 356
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTET--QKRTLHLRD 386
F ++++ M NS+ D+IG++S++ +K +E R +H+ D
Sbjct: 357 INRFITRSELDDMPENSICDVIGMLSFVGRVQRSKKKENSEDFWSYRWIHITD 409
>sp|P62634|CNBP_RAT Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp
PE=2 SV=1
Length = 177
Score = 40.4 bits (93), Expect = 0.060, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 19/20 (95%)
Query: 784 TSSECYKCHKTGHWARDCPS 803
+S+EC+KC ++GHWAR+CP+
Sbjct: 2 SSNECFKCGRSGHWARECPT 21
Score = 37.7 bits (86), Expect = 0.35, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 739 AARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWA 798
A Q C SCG GH +C + +G N + + CY+C ++GH A
Sbjct: 114 ADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKT-----SEVNCYRCGESGHLA 168
Query: 799 RDC 801
R+C
Sbjct: 169 REC 171
Score = 35.0 bits (79), Expect = 2.2, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 740 ARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSE-----CYKCHKT 794
+ C CG GH + CP+ G G+ F+S G S CY+C ++
Sbjct: 2 SSNECFKCGRSGHWARECPT-GGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES 60
Query: 795 GHWARDC 801
GH A+DC
Sbjct: 61 GHLAKDC 67
Score = 34.7 bits (78), Expect = 3.2, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 724 GNQYSGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIA 783
G Q+ S LP C CG GH + +C GG+
Sbjct: 42 GFQFVSSSLP--------DICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKRE 93
Query: 784 TSSECYKCHKTGHWARDC 801
CY C K GH ARDC
Sbjct: 94 REQCCYNCGKPGHLARDC 111
>sp|Q5R5R5|CNBP_PONAB Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2
SV=1
Length = 177
Score = 40.4 bits (93), Expect = 0.060, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 19/20 (95%)
Query: 784 TSSECYKCHKTGHWARDCPS 803
+S+EC+KC ++GHWAR+CP+
Sbjct: 2 SSNECFKCGRSGHWARECPT 21
Score = 37.7 bits (86), Expect = 0.35, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 739 AARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWA 798
A Q C SCG GH +C + +G N + + CY+C ++GH A
Sbjct: 114 ADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKT-----SEVNCYRCGESGHLA 168
Query: 799 RDC 801
R+C
Sbjct: 169 REC 171
Score = 35.0 bits (79), Expect = 2.2, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 740 ARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSE-----CYKCHKT 794
+ C CG GH + CP+ G G+ F+S G S CY+C ++
Sbjct: 2 SSNECFKCGRSGHWARECPT-GGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES 60
Query: 795 GHWARDC 801
GH A+DC
Sbjct: 61 GHLAKDC 67
Score = 34.7 bits (78), Expect = 3.2, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 724 GNQYSGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIA 783
G Q+ S LP C CG GH + +C GG+
Sbjct: 42 GFQFVSSSLP--------DICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKRE 93
Query: 784 TSSECYKCHKTGHWARDC 801
CY C K GH ARDC
Sbjct: 94 REQCCYNCGKPGHLARDC 111
>sp|P53996|CNBP_MOUSE Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=2
SV=2
Length = 178
Score = 40.4 bits (93), Expect = 0.060, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 19/20 (95%)
Query: 784 TSSECYKCHKTGHWARDCPS 803
+S+EC+KC ++GHWAR+CP+
Sbjct: 2 SSNECFKCGRSGHWARECPT 21
Score = 37.7 bits (86), Expect = 0.35, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 739 AARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWA 798
A Q C SCG GH +C + +G N + + CY+C ++GH A
Sbjct: 115 ADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKT-----SEVNCYRCGESGHLA 169
Query: 799 RDC 801
R+C
Sbjct: 170 REC 172
Score = 35.0 bits (79), Expect = 2.2, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 740 ARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSE-----CYKCHKT 794
+ C CG GH + CP+ G G+ F+S G S CY+C ++
Sbjct: 2 SSNECFKCGRSGHWARECPT-GGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES 60
Query: 795 GHWARDC 801
GH A+DC
Sbjct: 61 GHLAKDC 67
Score = 33.1 bits (74), Expect = 9.3, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 724 GNQYSGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSG-GGYANSFSSGAGI 782
G Q+ S LP C CG GH + +C + G GG+
Sbjct: 42 GFQFVSSSLP--------DICYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKR 93
Query: 783 ATSSECYKCHKTGHWARDC 801
CY C K GH ARDC
Sbjct: 94 EREQCCYNCGKPGHLARDC 112
>sp|P62633|CNBP_HUMAN Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1
SV=1
Length = 177
Score = 40.4 bits (93), Expect = 0.060, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 19/20 (95%)
Query: 784 TSSECYKCHKTGHWARDCPS 803
+S+EC+KC ++GHWAR+CP+
Sbjct: 2 SSNECFKCGRSGHWARECPT 21
Score = 37.7 bits (86), Expect = 0.35, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 739 AARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWA 798
A Q C SCG GH +C + +G N + + CY+C ++GH A
Sbjct: 114 ADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKT-----SEVNCYRCGESGHLA 168
Query: 799 RDC 801
R+C
Sbjct: 169 REC 171
Score = 35.0 bits (79), Expect = 2.2, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 740 ARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSE-----CYKCHKT 794
+ C CG GH + CP+ G G+ F+S G S CY+C ++
Sbjct: 2 SSNECFKCGRSGHWARECPT-GGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES 60
Query: 795 GHWARDC 801
GH A+DC
Sbjct: 61 GHLAKDC 67
Score = 34.7 bits (78), Expect = 3.2, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 724 GNQYSGSRLPAAGTSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIA 783
G Q+ S LP C CG GH + +C GG+
Sbjct: 42 GFQFVSSSLP--------DICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKRE 93
Query: 784 TSSECYKCHKTGHWARDC 801
CY C K GH ARDC
Sbjct: 94 REQCCYNCGKPGHLARDC 111
>sp|Q9HDB9|GAK8_HUMAN HERV-K_3q12.3 provirus ancestral Gag polyprotein OS=Homo sapiens
GN=ERVK-5 PE=1 SV=3
Length = 667
Score = 40.0 bits (92), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 15/95 (15%)
Query: 742 QSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDC 801
+ C +CG +GH +CP + + N + S C KC K HWA C
Sbjct: 543 KKCYNCGQIGHLKRSCPVL-------NKQNIINQAITAKNKKPSGLCPKCGKGKHWANQC 595
Query: 802 PSLNAAPPAYGSSGIGISAAGYRGAPR--QQVGGF 834
S + G +S RG P+ QQ G F
Sbjct: 596 HS------KFDKDGQPLSGNRKRGQPQAPQQTGAF 624
Score = 34.3 bits (77), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 11/64 (17%)
Query: 742 QSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDC 801
++C G H +M M G + GG +F +CY C + GH R C
Sbjct: 510 KACDGIGGAMHKAMLMAQAMRG---LTLGGQVRTFGK--------KCYNCGQIGHLKRSC 558
Query: 802 PSLN 805
P LN
Sbjct: 559 PVLN 562
>sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 OS=Caenorhabditis elegans GN=glh-4
PE=2 SV=2
Length = 1156
Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 12/90 (13%)
Query: 719 QMGQYGNQYSGSRLPAAGTSAARQSCSSCGAVGHSSMNC--PSIMSGPGQSSG--GGYAN 774
Q+G + + R+P R C +CG GH +++C P + GP ++ G G +A
Sbjct: 600 QLGHFASDCDQPRVP-------RGPCRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAK 652
Query: 775 SFSSG-AGIATSSECYKCHKTGHWARDCPS 803
+ + + C +C + GHW +CP+
Sbjct: 653 DCQNERVRMEPTEPCRRCAEEGHWGYECPT 682
>sp|Q6NZG4|NOXIN_MOUSE Nitric oxide-inducible gene protein OS=Mus musculus GN=Noxin PE=2
SV=1
Length = 898
Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 508 ATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQS--VVECDYRYILQFQ 565
A+++ ++ NF Y +C + C K++ R+ C +C S +YRY L +
Sbjct: 10 ASVLAVQNSNFIYPSC------QRCFSKIILESK-RFTCPKCGSSGDTGSTNYRYKLSLK 62
Query: 566 IQDHTGLTWVTAFQECAEEIMGMSAKDLY 594
+ + + L ++T F C + G++A L+
Sbjct: 63 VAESSKLFFITVFGSCLDTFFGLTATGLH 91
>sp|Q9YNA8|GAK3_HUMAN HERV-K_19q12 provirus ancestral Gag polyprotein OS=Homo sapiens
PE=1 SV=3
Length = 666
Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 16/93 (17%)
Query: 744 CSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPS 803
C +CG +GH NCP + ++ G C +C K HWA C S
Sbjct: 546 CYNCGQIGHLKKNCPVL--------NKQNITIQATTTGREPPDLCPRCKKGKHWASQCRS 597
Query: 804 LNAAPPAYGSSGIGISAAGYRGAPR--QQVGGF 834
+ +G +S RG P+ QQ G F
Sbjct: 598 ------KFDKNGQPLSGNEQRGQPQAPQQTGAF 624
>sp|P63126|GAK4_HUMAN HERV-K_6q14.1 provirus ancestral Gag polyprotein OS=Homo sapiens
PE=1 SV=2
Length = 666
Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 16/93 (17%)
Query: 744 CSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPS 803
C +CG +GH NCP + ++ G C +C K HWA C S
Sbjct: 546 CYNCGQIGHLKKNCPVL--------NKQNITIQATTTGREPPDLCPRCKKGKHWASQCRS 597
Query: 804 LNAAPPAYGSSGIGISAAGYRGAPR--QQVGGF 834
+ +G +S RG P+ QQ G F
Sbjct: 598 ------KFDKNGQPLSGNEQRGQPQAPQQTGAF 624
>sp|Q7LDI9|GAK2_HUMAN HERV-K_7p22.1 provirus ancestral Gag polyprotein OS=Homo sapiens
GN=ERVK6 PE=1 SV=3
Length = 666
Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 16/93 (17%)
Query: 744 CSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPS 803
C +CG +GH NCP + ++ G C +C K HWA C S
Sbjct: 546 CYNCGQIGHLKKNCPVL--------NKQNITIQATTTGREPPDLCPRCKKGKHWASQCRS 597
Query: 804 LNAAPPAYGSSGIGISAAGYRGAPR--QQVGGF 834
+ +G +S RG P+ QQ G F
Sbjct: 598 ------KFDKNGQPLSGNEQRGQPQAPQQTGAF 624
>sp|P63130|GAK12_HUMAN HERV-K_1q22 provirus ancestral Gag polyprotein OS=Homo sapiens PE=3
SV=2
Length = 666
Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 16/93 (17%)
Query: 744 CSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPS 803
C +CG +GH NCP + ++ G C +C K HWA C S
Sbjct: 546 CYNCGQIGHLKKNCPVL--------NKQNITIQATTTGREPPDLCPRCKKGKHWASQCRS 597
Query: 804 LNAAPPAYGSSGIGISAAGYRGAPR--QQVGGF 834
+ +G +S RG P+ QQ G F
Sbjct: 598 ------KFDKNGQPLSGNEQRGQPQAPQQTGAF 624
>sp|P62683|GAK1_HUMAN HERV-K_12q14.1 provirus ancestral Gag polyprotein OS=Homo sapiens
PE=1 SV=2
Length = 666
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 16/93 (17%)
Query: 744 CSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPS 803
C +CG +GH NCP + ++ G C +C K HWA C S
Sbjct: 546 CYNCGQIGHLKKNCPVL--------NKQNITIQATTTGREPPDLCPRCKKGKHWASQCRS 597
Query: 804 LNAAPPAYGSSGIGISAAGYRGAPR--QQVGGF 834
+ +G +S RG P+ QQ G F
Sbjct: 598 ------KFDKNGQPLSGNEQRGQPQAPQQTGAF 624
>sp|P63145|GAK11_HUMAN HERV-K_22q11.21 provirus ancestral Gag polyprotein OS=Homo sapiens
PE=1 SV=2
Length = 666
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 16/93 (17%)
Query: 744 CSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPS 803
C +CG +GH NCP + ++ G C +C K HWA C S
Sbjct: 546 CYNCGQIGHLKKNCPVL--------NKQNITIQATTTGREPPDLCPRCKKGKHWASQCRS 597
Query: 804 LNAAPPAYGSSGIGISAAGYRGAPR--QQVGGF 834
+ +G +S RG P+ QQ G F
Sbjct: 598 ------KFDKNGQPLSGNEQRGQPQAPQQTGAF 624
>sp|O65639|CSP1_ARATH Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=2 SV=1
Length = 299
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 743 SCSSCGAVGHSSMNCPSIMS---GPGQSSGGGY----ANSFSSGAGIATSSECYKCHKTG 795
+C SCG VGH + +C + G Q G G+ + SG G + CYKC K G
Sbjct: 231 TCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQRGSGGG-GNDNACYKCGKEG 289
Query: 796 HWARDCPSL 804
H+AR+C S+
Sbjct: 290 HFARECSSV 298
Score = 34.3 bits (77), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 33/89 (37%), Gaps = 13/89 (14%)
Query: 737 TSAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGH 796
T C +CG VGH + +C G G G A + CY C GH
Sbjct: 159 TKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRG----------AVKGGNDGCYTCGDVGH 208
Query: 797 WARDCPSLNAAP---PAYGSSGIGISAAG 822
+ARDC AA G SG S G
Sbjct: 209 FARDCTQKVAAGNVRSGGGGSGTCYSCGG 237
>sp|P62685|GAK6_HUMAN HERV-K_8p23.1 provirus ancestral Gag polyprotein OS=Homo sapiens
PE=1 SV=2
Length = 647
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 16/93 (17%)
Query: 744 CSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPS 803
C +CG +GH NCP + ++ G C +C K HWA C S
Sbjct: 546 CYNCGQIGHLKKNCPVL--------NKQNITIQATTTGREPPDLCPRCKKGKHWASQCRS 597
Query: 804 LNAAPPAYGSSGIGISAAGYRGAPR--QQVGGF 834
+ +G +S RG P+ QQ G F
Sbjct: 598 ------KFDKNGQPLSGNEQRGQPQAPQQTGAF 624
>sp|P62684|GAK5_HUMAN HERV-K_19p13.11 provirus ancestral Gag polyprotein OS=Homo sapiens
PE=1 SV=2
Length = 666
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 16/93 (17%)
Query: 744 CSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPS 803
C +CG +GH NCP + ++ G C +C K HWA C S
Sbjct: 546 CYNCGQIGHLKKNCPVL--------NKQNITIQATTTGREPPDLCPRCKKGKHWASQCRS 597
Query: 804 LNAAPPAYGSSGIGISAAGYRGAPR--QQVGGF 834
+ +G +S RG P+ QQ G F
Sbjct: 598 ------KFDKNGQPLSGNEQRGQPQAPQQTGAF 624
>sp|Q8C779|CX057_MOUSE Uncharacterized protein CXorf57 homolog OS=Mus musculus PE=2 SV=1
Length = 850
Score = 38.9 bits (89), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 80/173 (46%), Gaps = 24/173 (13%)
Query: 236 ARVTAKGELRHY---NNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYL 292
RV K +LR+Y N + + + ++ DS G + V +NA+ ++Y + G + L
Sbjct: 239 VRVLHKSKLRYYGKPNKKMIEPYQTYLEVADS-SGMVSVILWNALCPEWYKSLRVGLVLL 297
Query: 293 VSRGSLK----------PAQKNFNHLHNDLEIFLDM----TSMVQLC---YEDDASIPRQ 335
+ ++K PA L + +EI L++ T++V + + + +P+
Sbjct: 298 LQDYTVKKSYPLRIQPDPADPQMK-LISTMEICLNLRDPPTNIVIIPEKQLKSEWKLPKL 356
Query: 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTET--QKRTLHLRD 386
F ++++ M S+ D+IG++S++ +K +E R +H+ D
Sbjct: 357 INRFITRSELDDMPEKSICDVIGLLSFVGRVQRSKKKENSEDFWSYRWIHITD 409
>sp|P63128|POK4_HUMAN HERV-K_6q14.1 provirus ancestral Gag-Pol polyprotein OS=Homo
sapiens PE=3 SV=3
Length = 1117
Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 16/93 (17%)
Query: 744 CSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPS 803
C +CG +GH NCP + ++ G C +C K HWA C S
Sbjct: 546 CYNCGQIGHLKKNCPVL--------NKQNITIQATTTGREPPDLCPRCKKGKHWASQCRS 597
Query: 804 LNAAPPAYGSSGIGISAAGYRGAPR--QQVGGF 834
+ +G +S RG P+ QQ G F
Sbjct: 598 ------KFDKNGQPLSGNEQRGQPQAPQQTGAF 624
>sp|P87889|GAK10_HUMAN HERV-K_5q33.3 provirus ancestral Gag polyprotein OS=Homo sapiens
PE=1 SV=4
Length = 666
Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 16/93 (17%)
Query: 744 CSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPS 803
C +CG +GH NCP + ++ G C +C K HWA C S
Sbjct: 546 CYNCGQIGHLKKNCPVL--------NKQNITIQATTTGREPPDLCPRCKKGKHWASQCRS 597
Query: 804 LNAAPPAYGSSGIGISAAGYRGAPR--QQVGGF 834
+ +G +S RG P+ QQ G F
Sbjct: 598 ------KFDKNGQPLSGNEQRGQPQAPQQTGAF 624
>sp|P03344|GAG_BLVJ Gag polyprotein OS=Bovine leukemia virus (isolate Japanese BLV-1)
GN=gag PE=1 SV=3
Length = 392
Score = 38.5 bits (88), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 788 CYKCHKTGHWARDCPS 803
CY+C K GHWARDCP+
Sbjct: 347 CYRCLKEGHWARDCPT 362
>sp|P25058|GAG_BLVAU Gag polyprotein OS=Bovine leukemia virus (isolate Australian)
GN=gag PE=1 SV=3
Length = 392
Score = 38.5 bits (88), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 788 CYKCHKTGHWARDCPS 803
CY+C K GHWARDCP+
Sbjct: 347 CYRCLKEGHWARDCPT 362
>sp|Q2KIN0|ZCHC7_BOVIN Zinc finger CCHC domain-containing protein 7 OS=Bos taurus
GN=ZCCHC7 PE=2 SV=2
Length = 546
Score = 37.4 bits (85), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 729 GSRLPAAGT------SAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGI 782
G LP + T ++ R+ C C +GH + CP I ++ G + +G
Sbjct: 285 GCSLPMSSTHRCLERASWRKRCDRCDMIGHYADACPEIWRQYHLTTKPGPPKKPKTPSGQ 344
Query: 783 ATSSECYKCHKTGHWARDC 801
+T CY C + GH+ +C
Sbjct: 345 STLVYCYNCGQEGHYGHEC 363
>sp|Q64LC9|RBM4B_RAT RNA-binding protein 4B OS=Rattus norvegicus GN=Rbm4b PE=2 SV=2
Length = 357
Score = 36.6 bits (83), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 776 FSSGAGIATSSECYKCHKTGHWARDCP 802
+ G+ S CY+C K GHW+++CP
Sbjct: 150 LRTAPGMGDQSGCYRCGKEGHWSKECP 176
>sp|Q8VE92|RBM4B_MOUSE RNA-binding protein 4B OS=Mus musculus GN=Rbm4b PE=1 SV=1
Length = 357
Score = 36.6 bits (83), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 776 FSSGAGIATSSECYKCHKTGHWARDCP 802
+ G+ S CY+C K GHW+++CP
Sbjct: 150 LRTAPGMGDQSGCYRCGKEGHWSKECP 176
>sp|Q06AT9|RBM4B_PIG RNA-binding protein 4B OS=Sus scrofa GN=RBM4B PE=2 SV=1
Length = 359
Score = 36.6 bits (83), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 776 FSSGAGIATSSECYKCHKTGHWARDCP 802
+ G+ S CY+C K GHW+++CP
Sbjct: 150 LRTAPGMGDQSGCYRCGKEGHWSKECP 176
>sp|Q9BDY9|RBM4_RABIT RNA-binding protein 4 OS=Oryctolagus cuniculus GN=RBM4 PE=2 SV=1
Length = 359
Score = 36.6 bits (83), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 776 FSSGAGIATSSECYKCHKTGHWARDCP 802
+ G+ S CY+C K GHW+++CP
Sbjct: 150 LRTAPGMGDQSGCYRCGKEGHWSKECP 176
>sp|Q9BQ04|RBM4B_HUMAN RNA-binding protein 4B OS=Homo sapiens GN=RBM4B PE=1 SV=1
Length = 359
Score = 36.6 bits (83), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 776 FSSGAGIATSSECYKCHKTGHWARDCP 802
+ G+ S CY+C K GHW+++CP
Sbjct: 150 LRTAPGMGDQSGCYRCGKEGHWSKECP 176
>sp|Q58559|RPA_METJA Replication factor A OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rpa PE=1 SV=1
Length = 645
Score = 36.6 bits (83), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 86/229 (37%), Gaps = 54/229 (23%)
Query: 380 RTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTIS 439
R L L D +GR + L+LW D L + + + IL A D+ V+G
Sbjct: 433 RNLLLEDGTGR-IRLSLW------DDLAEIEIKEGDIVEILHAYAKERGDYIDLVIGKYG 485
Query: 440 TTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQIKDEGLGTKE 499
++ I P + V I + RK ++ I+D
Sbjct: 486 --RIIINP-------------------EGVEIKTN---------RKFIADIED------- 508
Query: 500 KPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYR 559
+ + V +V I D CP C K+V+ DG ++C C VE +
Sbjct: 509 -GETVEVRGAVVKILSDTLFLYLCP------NCRKRVVEI-DGIYNCPICGD--VEPEEI 558
Query: 560 YILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGE 608
L F + D TG A+ E+++ M+ ++L +L DE GE
Sbjct: 559 LRLNFVVDDGTGTLLCRAYDRRVEKMLKMNREELKNLTIEMVEDEILGE 607
>sp|B1WC15|ZCHC7_RAT Zinc finger CCHC domain-containing protein 7 OS=Rattus norvegicus
GN=Zcchc7 PE=2 SV=1
Length = 542
Score = 36.6 bits (83), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 732 LPAAGT------SAARQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATS 785
LP + T S+ R+ C C +GH + CP I ++ G + +G +
Sbjct: 285 LPMSSTHRCFERSSWRKRCDRCDMIGHYADACPEIWRQYHLTTKPGPPKKPKTPSGQSAL 344
Query: 786 SECYKCHKTGHWARDCPSLNAAPPAYGSS 814
CY C + GH+ +C A+ +S
Sbjct: 345 VYCYNCAQKGHYGHECTERRMFNQAFPTS 373
>sp|Q02843|GAG_SIVG1 Gag polyprotein OS=Simian immunodeficiency virus agm.grivet
(isolate AGM gr-1) GN=gag PE=1 SV=1
Length = 513
Score = 36.6 bits (83), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 44/135 (32%), Gaps = 42/135 (31%)
Query: 681 EMTYTGTGNIGSRQTAPVVANYVGNNSNAGAASGLLANQMGQYGNQYSGSRLPAAGTSAA 740
EM G G + A ++ + N N M Q G Q G R P
Sbjct: 348 EMLIACQGVGGPQHKAKLMVEMMSNGQN-----------MVQVGPQKKGPRGPL------ 390
Query: 741 RQSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARD 800
C +CG GH C P Q +C+KC K GH A+D
Sbjct: 391 --KCFNCGKFGHMQREC----KAPRQI-------------------KCFKCGKIGHMAKD 425
Query: 801 CPSLNAAPPAYGSSG 815
C + A YG G
Sbjct: 426 CKNGQANFLGYGHWG 440
>sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 OS=Mus musculus GN=Rbm4 PE=1 SV=1
Length = 361
Score = 36.6 bits (83), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 776 FSSGAGIATSSECYKCHKTGHWARDCP 802
+ G+ S CY+C K GHW+++CP
Sbjct: 150 LRTAPGMGDQSGCYRCGKEGHWSKECP 176
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 316,503,411
Number of Sequences: 539616
Number of extensions: 14190424
Number of successful extensions: 62043
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 198
Number of HSP's that attempted gapping in prelim test: 59570
Number of HSP's gapped (non-prelim): 1772
length of query: 834
length of database: 191,569,459
effective HSP length: 126
effective length of query: 708
effective length of database: 123,577,843
effective search space: 87493112844
effective search space used: 87493112844
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)