Query 003281
Match_columns 834
No_of_seqs 434 out of 2019
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 19:49:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003281.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003281hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gop_C Putative uncharacterize 100.0 2.8E-91 9.5E-96 798.7 49.7 433 218-662 2-444 (444)
2 1jmc_A Protein (replication pr 100.0 1.3E-50 4.5E-55 427.9 28.8 239 217-465 6-245 (246)
3 1l1o_C Replication protein A 7 100.0 3.3E-44 1.1E-48 359.5 21.7 177 480-662 3-179 (181)
4 3u50_C Telomerase-associated p 100.0 3.4E-40 1.2E-44 322.8 14.3 154 483-648 7-171 (172)
5 1ynx_A Replication factor-A pr 100.0 5.4E-29 1.9E-33 230.5 13.5 111 217-328 2-112 (114)
6 2b29_A Replication protein A 7 99.9 8.3E-26 2.8E-30 210.2 11.2 93 1-99 25-122 (123)
7 3dm3_A Replication factor A; p 99.4 1.3E-12 4.6E-17 118.2 10.8 98 217-326 3-101 (105)
8 1o7i_A SSB, SSO2364, single st 99.4 4.2E-12 1.4E-16 118.0 14.2 111 219-350 2-112 (119)
9 2k50_A Replication factor A re 99.3 1E-11 3.5E-16 114.7 11.5 107 335-452 3-111 (115)
10 3e0e_A Replication protein A; 99.3 8.8E-12 3E-16 111.4 10.3 93 220-325 3-96 (97)
11 1o7i_A SSB, SSO2364, single st 99.3 2.2E-11 7.5E-16 113.2 11.0 103 339-455 2-107 (119)
12 3dm3_A Replication factor A; p 99.2 7.5E-11 2.6E-15 106.7 11.5 93 338-444 4-98 (105)
13 2li8_A Protein LIN-28 homolog 99.2 1.6E-11 5.5E-16 103.4 6.1 66 750-828 2-67 (74)
14 2a51_A Nucleocapsid protein; s 99.2 1.8E-11 6.1E-16 90.2 4.2 38 743-803 2-39 (39)
15 2lli_A Protein AIR2; RNA surve 99.1 9.7E-11 3.3E-15 109.6 9.3 78 743-829 6-86 (124)
16 2cqf_A RNA-binding protein LIN 99.1 4.1E-11 1.4E-15 98.0 5.6 51 742-815 8-58 (63)
17 3nyb_B Protein AIR2; polya RNA 99.1 2.1E-11 7.1E-16 104.8 3.6 60 742-826 6-65 (83)
18 2bl6_A Nucleocapsid protein P1 99.1 4.6E-11 1.6E-15 86.9 3.3 36 743-803 2-37 (37)
19 2k50_A Replication factor A re 99.1 9.2E-10 3.1E-14 101.6 12.7 101 218-327 6-107 (115)
20 2lli_A Protein AIR2; RNA surve 99.1 3.7E-10 1.3E-14 105.6 9.8 80 743-825 24-123 (124)
21 1cl4_A Protein (GAG polyprotei 99.1 4.9E-11 1.7E-15 96.7 2.8 49 743-806 3-51 (60)
22 2ec7_A GAG polyprotein (PR55GA 99.1 8.8E-11 3E-15 91.0 4.1 40 743-805 8-47 (49)
23 2ihx_A Nucleocapsid (NC) prote 99.0 1.1E-10 3.7E-15 94.9 4.1 47 742-806 5-51 (61)
24 1a1t_A Nucleocapsid protein; s 99.0 1.7E-10 5.8E-15 91.8 3.1 40 743-805 14-53 (55)
25 3e0e_A Replication protein A; 98.9 5.6E-09 1.9E-13 93.2 11.5 90 341-444 4-94 (97)
26 2li8_A Protein LIN-28 homolog 98.9 6.6E-10 2.2E-14 93.5 4.8 41 743-805 26-66 (74)
27 2k75_A Uncharacterized protein 98.9 7.4E-09 2.5E-13 93.9 11.2 93 218-327 2-95 (106)
28 3ts2_A Protein LIN-28 homolog 98.8 1.9E-09 6.5E-14 103.5 4.4 42 743-806 99-140 (148)
29 2k75_A Uncharacterized protein 98.8 4.5E-08 1.6E-12 88.7 12.4 91 337-445 1-92 (106)
30 1wjj_A Hypothetical protein F2 98.8 6.1E-08 2.1E-12 92.2 13.7 98 217-326 14-121 (145)
31 2cqf_A RNA-binding protein LIN 98.6 2.8E-08 9.5E-13 81.1 5.2 43 784-826 6-48 (63)
32 3nyb_B Protein AIR2; polya RNA 98.6 1.6E-08 5.4E-13 86.9 2.9 42 743-806 26-67 (83)
33 2a51_A Nucleocapsid protein; s 98.6 3.5E-08 1.2E-12 72.5 4.2 37 787-824 2-38 (39)
34 2ec7_A GAG polyprotein (PR55GA 98.6 6.6E-08 2.3E-12 74.7 5.6 42 785-827 6-47 (49)
35 2bl6_A Nucleocapsid protein P1 98.5 4.7E-08 1.6E-12 70.9 3.7 35 787-824 2-36 (37)
36 1cl4_A Protein (GAG polyprotei 98.5 3.9E-08 1.3E-12 79.6 3.0 41 786-826 2-49 (60)
37 1xjv_A Protection of telomeres 98.5 1.2E-05 4.1E-10 86.3 21.4 226 217-460 4-288 (294)
38 1a1t_A Nucleocapsid protein; s 98.4 1.3E-07 4.5E-12 75.0 4.0 41 785-826 12-52 (55)
39 1jmc_A Protein (replication pr 98.4 1.6E-05 5.4E-10 83.0 21.0 177 338-585 7-192 (246)
40 2kbn_A Conserved protein; nucl 98.4 2.6E-06 8.8E-11 77.5 12.9 92 218-326 4-95 (109)
41 2ihx_A Nucleocapsid (NC) prote 98.4 1.7E-07 5.9E-12 75.9 4.3 42 785-826 4-49 (61)
42 1wjj_A Hypothetical protein F2 98.4 1.1E-06 3.8E-11 83.5 9.3 100 335-447 12-121 (145)
43 3ts2_A Protein LIN-28 homolog 98.3 2.5E-07 8.4E-12 88.8 4.6 44 786-829 98-141 (148)
44 2kbn_A Conserved protein; nucl 98.2 6.4E-06 2.2E-10 74.9 11.3 90 339-447 5-95 (109)
45 1xjv_A Protection of telomeres 98.1 4.7E-05 1.6E-09 81.6 17.4 143 336-514 3-167 (294)
46 1jb7_A Telomere-binding protei 98.1 0.00062 2.1E-08 77.6 27.1 338 216-595 35-453 (495)
47 4gop_C Putative uncharacterize 98.1 6.6E-05 2.3E-09 85.2 17.7 176 339-585 3-187 (444)
48 1dsq_A Nucleic acid binding pr 98.0 1.7E-06 5.7E-11 57.4 2.3 21 786-806 3-23 (26)
49 1ynx_A Replication factor-A pr 98.0 4.1E-05 1.4E-09 70.1 10.8 101 338-448 3-111 (114)
50 2ysa_A Retinoblastoma-binding 97.9 6.6E-06 2.3E-10 64.5 4.1 21 785-805 7-27 (55)
51 1qzg_A Protection of telomeres 97.8 0.00014 5E-09 71.5 12.2 89 337-433 27-120 (187)
52 1a6b_B Momulv, zinc finger pro 97.8 1.9E-05 6.3E-10 57.7 3.7 22 785-806 10-31 (40)
53 3u58_A Tetrahymena TEB1 AB; te 97.5 0.01 3.4E-07 54.2 19.2 159 219-403 11-173 (213)
54 1dsq_A Nucleic acid binding pr 97.5 2.8E-05 9.6E-10 51.5 1.9 20 743-762 4-23 (26)
55 1nc8_A Nucleocapsid protein; H 97.5 3.1E-05 1.1E-09 52.7 1.9 20 786-805 7-26 (29)
56 1u6p_A GAG polyprotein; MLV, A 97.5 4.8E-05 1.6E-09 59.9 3.1 22 785-806 23-44 (56)
57 1a6b_B Momulv, zinc finger pro 97.4 0.00014 4.6E-09 53.2 4.1 21 742-762 11-31 (40)
58 1miu_A BRCA2, breast cancer ty 97.4 0.002 7E-08 75.3 15.7 160 267-449 525-693 (738)
59 1jb7_A Telomere-binding protei 97.3 0.0033 1.1E-07 71.7 15.5 89 334-433 33-133 (495)
60 1u6p_A GAG polyprotein; MLV, A 97.2 0.00022 7.6E-09 56.1 3.7 23 740-762 22-44 (56)
61 1nc8_A Nucleocapsid protein; H 97.2 9.9E-05 3.4E-09 50.2 1.2 20 743-762 8-27 (29)
62 3u4v_A Telomerase-associated p 97.0 0.0081 2.8E-07 50.1 11.5 88 219-317 15-104 (117)
63 2ysa_A Retinoblastoma-binding 96.6 0.00057 1.9E-08 53.6 1.6 20 742-761 8-27 (55)
64 1se8_A Single-strand binding p 95.0 0.95 3.2E-05 48.1 18.4 65 229-296 5-82 (301)
65 2fxq_A Single-strand binding p 93.6 2.3 8E-05 44.1 17.6 176 229-431 5-207 (264)
66 3mxn_A RECQ-mediated genome in 93.6 0.096 3.3E-06 49.7 6.0 88 560-657 60-154 (157)
67 4hik_A Protection of telomeres 93.5 0.5 1.7E-05 44.4 10.8 109 342-458 5-136 (143)
68 3u4z_A Telomerase-associated p 92.9 2.6 9E-05 34.7 12.7 86 225-326 8-94 (109)
69 3ebe_A Protein MCM10 homolog; 92.4 0.89 3E-05 45.3 11.4 81 217-302 36-126 (200)
70 4gop_B Putative uncharacterize 92.3 0.52 1.8E-05 44.0 9.1 71 352-437 37-108 (136)
71 3kdf_D Replication protein A 3 91.9 0.56 1.9E-05 43.5 8.9 71 352-437 32-103 (132)
72 4dni_A Fusion protein of RNA-e 89.9 18 0.00062 37.2 18.6 175 229-431 30-229 (257)
73 2pi2_A Replication protein A 3 88.7 1.2 4.1E-05 46.6 9.0 68 353-437 73-143 (270)
74 3en2_A Probable primosomal rep 88.3 3.7 0.00013 36.2 10.4 65 229-297 2-77 (101)
75 3eiv_A Single-stranded DNA-bin 87.1 2.7 9.1E-05 41.8 9.8 64 229-295 4-81 (199)
76 3rn5_A Interferon-inducible pr 86.3 26 0.00089 34.2 18.7 175 235-444 16-196 (208)
77 1txy_A Primosomal replication 86.1 2.3 7.9E-05 37.5 8.0 66 229-297 2-78 (104)
78 3fhw_A Primosomal replication 85.9 5.1 0.00018 36.1 10.2 66 229-298 1-77 (115)
79 3kf6_A Protein STN1; OB fold, 85.6 6.4 0.00022 37.6 11.3 72 352-437 48-120 (159)
80 3u58_A Tetrahymena TEB1 AB; te 84.9 7.9 0.00027 35.3 10.8 86 224-325 125-211 (213)
81 1qzg_A Protection of telomeres 82.9 2.3 8E-05 41.6 7.0 73 230-304 43-120 (187)
82 3tqy_A Single-stranded DNA-bin 82.9 3.4 0.00012 39.5 8.1 66 228-296 7-85 (158)
83 2vw9_A Single-stranded DNA bin 80.6 4.6 0.00016 37.4 7.9 65 229-296 2-78 (134)
84 3koj_A Uncharacterized protein 79.8 17 0.00057 32.3 11.0 65 229-295 11-81 (108)
85 3k8a_A Putative primosomal rep 79.7 15 0.00051 32.3 10.5 63 230-297 8-81 (103)
86 1v1q_A Primosomal replication 79.6 6.2 0.00021 36.6 8.3 65 230-297 20-95 (134)
87 3afp_A Single-stranded DNA-bin 78.9 7.9 0.00027 37.3 9.2 64 229-295 4-81 (168)
88 1z9f_A Single-strand binding p 78.8 7.7 0.00026 36.8 9.0 66 227-295 14-91 (153)
89 3i7f_A Aspartyl-tRNA synthetas 78.6 15 0.00051 42.1 12.8 99 217-325 48-153 (548)
90 3vdy_A SSB, single-stranded DN 78.3 5.4 0.00019 35.8 7.5 66 228-296 4-79 (116)
91 3ulp_A Single-strand binding p 77.3 5.1 0.00017 36.5 7.0 65 229-296 6-84 (124)
92 3ebe_A Protein MCM10 homolog; 75.8 3.6 0.00012 40.9 5.9 81 337-428 36-123 (200)
93 3pgz_A Single-stranded DNA-bin 74.5 7.2 0.00025 38.4 7.6 64 229-295 26-103 (193)
94 1eov_A ASPRS, aspartyl-tRNA sy 74.0 14 0.00048 41.8 11.0 98 218-325 22-130 (487)
95 4gop_B Putative uncharacterize 73.9 7.9 0.00027 35.8 7.5 76 562-661 55-131 (136)
96 2hqh_E Restin; beta/BETA struc 73.8 0.81 2.8E-05 29.5 0.4 20 741-760 3-22 (26)
97 4dam_A Single-stranded DNA-bin 73.3 5.5 0.00019 36.6 6.1 63 229-295 15-91 (128)
98 1qvc_A Single stranded DNA bin 72.7 7.2 0.00025 36.6 6.9 65 229-296 5-82 (145)
99 3jyw_9 60S ribosomal protein L 69.1 2.6 9E-05 34.6 2.5 27 522-554 28-55 (72)
100 4hik_A Protection of telomeres 68.6 13 0.00044 34.8 7.5 47 268-320 66-112 (143)
101 1eqq_A Single stranded DNA bin 68.5 3.3 0.00011 40.4 3.7 65 229-296 6-83 (178)
102 3kdf_D Replication protein A 3 67.9 22 0.00075 32.5 9.0 75 562-661 50-126 (132)
103 1se8_A Single-strand binding p 66.9 19 0.00065 38.0 9.4 64 229-296 129-204 (301)
104 3m4p_A Ehasnrs, asparaginyl-tR 65.4 27 0.00093 39.1 10.8 97 219-325 19-122 (456)
105 2pzo_E CAP-Gly domain-containi 65.2 1.5 5.1E-05 31.6 0.3 23 738-760 17-39 (42)
106 3f2b_A DNA-directed DNA polyme 65.0 15 0.00053 45.2 9.2 73 218-295 6-80 (1041)
107 3lgj_A Single-stranded DNA-bin 64.9 20 0.0007 34.4 8.4 65 229-296 23-101 (169)
108 3k81_C MP18 RNA editing comple 64.2 9.3 0.00032 36.6 5.7 65 226-295 19-97 (164)
109 3eiv_A Single-stranded DNA-bin 64.1 24 0.00084 34.8 8.9 73 352-432 5-90 (199)
110 1ffk_W Ribosomal protein L37AE 63.3 2.1 7.1E-05 35.3 0.9 32 522-559 29-61 (73)
111 3j21_i 50S ribosomal protein L 59.4 2.9 9.8E-05 35.3 1.0 27 522-554 37-64 (83)
112 3rlo_A Gamma-interferon-induci 59.0 1.4E+02 0.0046 29.2 19.2 174 234-443 12-192 (204)
113 3k7u_C MP18 RNA editing comple 58.1 74 0.0025 29.7 10.7 63 228-295 5-81 (148)
114 3cc2_Z 50S ribosomal protein L 57.3 3.1 0.00011 37.2 1.0 27 522-554 62-89 (116)
115 3koj_A Uncharacterized protein 56.1 51 0.0018 29.1 8.8 73 352-432 12-90 (108)
116 2pi2_A Replication protein A 3 55.3 21 0.00072 37.0 7.1 59 231-299 73-133 (270)
117 3iz5_m 60S ribosomal protein L 54.1 4.2 0.00014 35.0 1.2 27 522-554 38-65 (92)
118 3nem_A Aspartyl-tRNA synthetas 53.5 61 0.0021 36.0 10.9 90 221-325 6-101 (438)
119 3ull_A DNA binding protein; DN 52.8 21 0.00073 32.7 6.0 66 228-296 13-97 (132)
120 1vq8_Z 50S ribosomal protein L 52.0 4.4 0.00015 34.3 1.0 27 522-554 29-56 (83)
121 3izc_m 60S ribosomal protein R 51.4 4.9 0.00017 34.5 1.2 27 522-554 38-65 (92)
122 2hqh_E Restin; beta/BETA struc 49.6 4 0.00014 26.4 0.3 18 787-804 5-22 (26)
123 1x54_A Asparaginyl-tRNA synthe 49.6 55 0.0019 36.3 9.8 89 222-325 7-101 (434)
124 3bju_A Lysyl-tRNA synthetase; 49.3 57 0.0019 37.1 10.0 79 230-325 56-141 (521)
125 1wyd_A Hypothetical aspartyl-t 49.0 52 0.0018 36.5 9.4 81 229-325 16-98 (429)
126 2xgt_A Asparaginyl-tRNA synthe 48.7 56 0.0019 36.3 9.7 92 221-323 2-95 (435)
127 3nbi_A RECQ-mediated genome in 48.1 15 0.00052 36.8 4.4 39 25-65 135-174 (216)
128 4a17_Y RPL37A, 60S ribosomal p 47.9 4.6 0.00016 35.3 0.5 26 523-554 39-65 (103)
129 1n9w_A Aspartyl-tRNA synthetas 47.6 78 0.0027 34.9 10.6 81 222-324 5-87 (422)
130 3j21_g 50S ribosomal protein L 46.8 8.4 0.00029 29.4 1.7 24 520-552 14-37 (51)
131 1c0a_A Aspartyl tRNA synthetas 46.6 94 0.0032 35.8 11.4 87 229-325 15-105 (585)
132 1l0w_A Aspartyl-tRNA synthetas 44.0 81 0.0028 36.3 10.3 87 229-325 16-103 (580)
133 3vdy_A SSB, single-stranded DN 43.4 80 0.0027 27.9 8.1 35 391-431 51-86 (116)
134 3tqy_A Single-stranded DNA-bin 42.2 77 0.0026 29.9 8.2 35 391-431 57-92 (158)
135 3e2u_E CAP-Gly domain-containi 41.6 6.5 0.00022 28.5 0.4 21 740-760 19-39 (42)
136 4ex5_A Lysine--tRNA ligase; st 41.3 86 0.0029 35.7 9.8 78 230-324 87-168 (529)
137 2xvs_A Tetratricopeptide repea 39.5 54 0.0018 31.3 6.5 73 217-299 61-134 (166)
138 2hpi_A DNA polymerase III alph 39.1 18 0.00061 45.4 4.0 76 337-424 1024-1103(1220)
139 4dni_A Fusion protein of RNA-e 38.4 70 0.0024 32.8 7.7 61 229-295 146-221 (257)
140 2fxq_A Single-strand binding p 38.2 61 0.0021 33.3 7.4 63 229-295 128-199 (264)
141 2i46_A Adrenocortical dysplasi 37.8 24 0.00083 32.2 3.6 51 26-87 52-103 (161)
142 3en2_A Probable primosomal rep 37.2 1.6E+02 0.0055 25.6 8.8 72 354-434 5-86 (101)
143 1e1o_A Lysyl-tRNA synthetase, 37.0 1.1E+02 0.0038 34.6 9.8 79 230-325 65-148 (504)
144 3a74_A Lysyl-tRNA synthetase; 34.7 1.5E+02 0.0051 33.4 10.4 79 230-325 57-139 (493)
145 2vw9_A Single-stranded DNA bin 33.5 1E+02 0.0035 28.1 7.4 35 391-431 50-85 (134)
146 3alr_A Nanos protein; zinc-fin 32.2 13 0.00043 32.5 0.8 41 742-805 37-94 (106)
147 3k8a_A Putative primosomal rep 31.7 1.3E+02 0.0045 26.1 7.4 72 353-434 9-90 (103)
148 3ulp_A Single-strand binding p 31.6 2.6E+02 0.009 24.8 9.7 36 391-432 55-92 (124)
149 1v1q_A Primosomal replication 30.0 2.1E+02 0.007 26.2 8.6 68 353-428 21-98 (134)
150 1txy_A Primosomal replication 28.7 1.9E+02 0.0064 25.0 7.9 62 354-424 5-76 (104)
151 2pk2_A Cyclin-T1, protein TAT; 28.2 14 0.00049 40.0 0.5 6 743-748 316-321 (358)
152 3fhw_A Primosomal replication 27.8 1.7E+02 0.0059 26.0 7.5 70 354-432 4-83 (115)
153 1gm5_A RECG; helicase, replica 26.5 35 0.0012 41.0 3.5 74 217-300 154-229 (780)
154 3k7u_C MP18 RNA editing comple 26.2 2.4E+02 0.0082 26.2 8.6 70 353-432 8-90 (148)
155 3afp_A Single-stranded DNA-bin 26.1 1.3E+02 0.0045 28.6 6.9 35 391-431 54-89 (168)
156 2vv6_A FIXL, sensor protein FI 25.9 64 0.0022 27.1 4.4 30 564-595 6-35 (119)
157 2pzo_E CAP-Gly domain-containi 25.5 18 0.00061 26.1 0.4 18 787-804 22-39 (42)
158 3au7_A TIAS, putative uncharac 25.3 1.6E+02 0.0056 32.1 8.2 68 220-296 276-345 (402)
159 1pft_A TFIIB, PFTFIIBN; N-term 24.6 45 0.0015 24.8 2.6 27 522-554 7-35 (50)
160 3pgz_A Single-stranded DNA-bin 24.5 1.6E+02 0.0055 28.8 7.2 35 391-431 75-111 (193)
161 2oq0_A Gamma-interferon-induci 24.4 5E+02 0.017 25.3 20.3 174 235-443 19-199 (206)
162 2pk7_A Uncharacterized protein 24.3 29 0.001 28.1 1.6 28 520-553 8-36 (69)
163 4gs3_A Single-stranded DNA-bin 24.0 98 0.0034 27.3 5.1 64 230-299 12-79 (107)
164 3lgj_A Single-stranded DNA-bin 24.0 2.6E+02 0.0087 26.6 8.5 36 391-432 72-109 (169)
165 2jr6_A UPF0434 protein NMA0874 23.9 30 0.001 28.0 1.6 28 520-553 8-36 (68)
166 2hf1_A Tetraacyldisaccharide-1 23.9 29 0.001 28.0 1.5 29 519-553 7-36 (68)
167 2js4_A UPF0434 protein BB2007; 23.7 29 0.001 28.2 1.5 28 520-553 8-36 (70)
168 1qvc_A Single stranded DNA bin 23.1 1.9E+02 0.0066 26.6 7.3 35 391-431 54-89 (145)
169 1nlt_A Protein YDJ1, mitochond 21.2 47 0.0016 33.8 2.8 10 743-752 40-49 (248)
170 1d06_A Nitrogen fixation regul 20.5 93 0.0032 26.6 4.4 31 564-596 29-59 (130)
No 1
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=100.00 E-value=2.8e-91 Score=798.72 Aligned_cols=433 Identities=36% Similarity=0.690 Sum_probs=405.2
Q ss_pred CceeccccCCCCCceEEEEEEEEeccceeecCCCCCcceEEEEEeeCCCCEEEEEEechHHHhhhhccCcCcEEEEeeeE
Q 003281 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGS 297 (834)
Q Consensus 218 ~~~pI~~L~p~~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De~g~~I~at~f~~~~d~f~~~l~eG~vy~is~~~ 297 (834)
+++||++|+||+++|+|+|||++||++|+|.+++++|++|+|+|+|++| +|+|++|++++++|+++|+||+||+|++|+
T Consensus 2 ~~~~I~~L~p~~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De~G-~I~at~~~~~~~~f~~~l~eG~vy~Is~~~ 80 (444)
T 4gop_C 2 PIYPIEGLSPYQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSG-EIKATGFNDAVDRFYPLLQENHVYLISKAR 80 (444)
T ss_dssp -CCCSTTCCTTCCSCEEEEECCEECCCEEEECSSCEEEEEEEEEECSSC-EEEEEEETHHHHHHTTTCCTTCEEEEESCE
T ss_pred CceeHHHCCCCCcceEEEEEEEEccCcceecCCCCCceEEEEEEEcCCC-EEEEEEeHHHHHHHHHheecCCEEEEcCCE
Confidence 5899999999999999999999999999999999999999999999875 999999999999999999999999999999
Q ss_pred EecCCcccccCCCeEEEEEccCccEEEecCCCCCCccccccccccccccccCCCceeeEEEEEEEecCCeeEEcc-CCce
Q 003281 298 LKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRK-NGTE 376 (834)
Q Consensus 298 V~~a~~~~~~~~~~yeI~f~~~T~I~~~~d~~~~iP~~~~~f~~i~dI~~~~~~~~vDVIGvV~~V~~~~~i~~k-~g~~ 376 (834)
|++++++|++++|+|||.|+.+|+|+++.+ +..||...|+|++|+||.+++.+.+|||||+|++|+++.+|++| +|++
T Consensus 81 V~~~~~~y~~~~~~~ei~~~~~T~V~~~~d-~~~iP~~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~i~~k~~g~~ 159 (444)
T 4gop_C 81 VNIAKKQFSNLQNEYEITFENSTEIEECTD-ATDVPEVKYEFVRINELESVEANQQCDVIGILDSYGELSEIVSKASQRP 159 (444)
T ss_dssp EEECCGGGCSCCCSEEEEECTTCEEEECSC-CSSSCCCCCCBCCGGGGGGSCSSCCCBEEEEEEEECCCEEECCTTTCSC
T ss_pred EEecCCccccCCCCEEEEEcCCcEEEEccC-cccCcceeecccCHHHHhccCCCCceEEEEEEEEcCCcEEEEEccCCce
Confidence 999999999999999999999999999965 46899999999999999998889999999999999999999988 7999
Q ss_pred eeEEEEEEeccCCcEEEEEEcCCccchhhhhhhhcccCCCccEEEEEEEEEeecCCeEEEeecceEEEEcCCchHHHHHH
Q 003281 377 TQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRLK 456 (834)
Q Consensus 377 ~~kr~i~L~D~s~~si~vtLWg~~a~~~~~~l~~~~~~~~~~Vv~ik~~rV~~f~G~~Ls~~~~S~i~inPd~pe~~~l~ 456 (834)
..+|+|+|+|+|+.+|+|||||++|+.+... .....++||+|+++||++|+|++||+.++|+|++|||+||+++|+
T Consensus 160 ~~kr~i~L~D~sg~~i~~tLWg~~A~~f~~~----~~~~~~~VV~i~~~kV~~f~G~~ls~~~~s~i~inPdipea~~l~ 235 (444)
T 4gop_C 160 VQKRELTLVDQGNRSVKLTLWGKTAETFPTN----AGVDEKPVLAFKGVKVGDFGGRSLSMFSSSTMLINPDITESHVLR 235 (444)
T ss_dssp EEEEEEEEECTTCBEEEEEEEHHHHHTSTTS----TTSSSCCEEEEESCEEECTTSSEEECCTTCEEEESCSSHHHHHHH
T ss_pred eeEEEEEEEeCCCCEEEEEEEhhhhhhhhhh----hccCCCCEEEEEeEEEeecCCeEEeccccceEEECCCCHHHHHHH
Confidence 9999999999999999999999999875421 113568999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccceeeecccc---------ccCCccchhccHhhhhhcCCCCCCCCceEEEEEEEEEEecCCeeeeCCCCCc
Q 003281 457 EWFEKEGKNTQSVSISRDS---------LSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMI 527 (834)
Q Consensus 457 ~w~~~~g~~~~~~sls~~~---------~~~~~~~~~ktI~ei~~~~lg~~~k~~~~~v~atI~~I~~d~~~Y~aC~~~~ 527 (834)
.||+++|.+..+.+++... .+.++...+|||+||+++++|.+++++||+|+|+|++|+.++|||+|||.+
T Consensus 236 ~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kti~~i~~~~~g~~~~~~~~~v~atI~~i~~~~~~Y~aC~~~- 314 (444)
T 4gop_C 236 GWYDNDGAHAQFQPYTNGGVGGGAMGGGGAGANMAERRTIVQVKDENLGMSEKPDYFNVRATVVYIKQENLYYTACASE- 314 (444)
T ss_dssp HHHHHHTTTSCCBCCCCCC---------CTTCCSSEECCHHHHHHTTTTSSSSCEEEEEEEEEEEECCTTCEEEECCST-
T ss_pred HHHHcCCCCcccccccccccccccccccccccccccceeHHHHhhhccCCCCCCcEEEEEEEEEEEcCCceEEccCCcc-
Confidence 9999999988888877543 112345678999999999999999999999999999999999999999943
Q ss_pred CCCCcCcccccCCCCceecCCCCCccccceEEEEEEEEEEeCCCeEEEEEehHHHHHHhCCCHHHHHhhhccCCChhHHH
Q 003281 528 GDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFG 607 (834)
Q Consensus 528 ~~~~C~KKv~~~~dg~~~CekC~~~~~~~~~ry~l~~~i~D~Tg~~~~~~F~e~ae~llG~sA~el~~l~~ee~d~~~~~ 607 (834)
.|+|||++..+|.|+|++|++.+++|+|||+|++.|+|+||++|+++|++.|++|||++|+||.+++ ++|+..|+
T Consensus 315 ---~C~kkv~~~~~g~~~C~~C~~~~~~~~~ry~l~~~v~D~Tg~~~~~~F~~~a~~llG~sa~el~~~~--~~d~~~~~ 389 (444)
T 4gop_C 315 ---GCNKKVNLDHENNWRCEKCDRSYATPEYRYILSTNVADATGQMWLSGFNEDATQLIGMSAGELHKLR--EESESEFS 389 (444)
T ss_dssp ---TCCCBEEECTTSCEEETTTTEEESSCEEEECEEEEEEETTEEEEEEECHHHHHHHTTSCHHHHHHHH--TTCHHHHH
T ss_pred ---cCCCccccCCCccEECCCCCCcCccccEEEEEEEEEEeCCCCEEEEEehHHHHHHcCCCHHHHHHHH--hcChHHHH
Confidence 4999998878899999999999999999999999999999999999999999999999999999998 67899999
Q ss_pred HHHHHhcCceEEEEEEEeecccCccceEEEEEEEeeecChHHHHHHHHHHHHhhc
Q 003281 608 EVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVKAERYNYSSETRFILDLMDKLK 662 (834)
Q Consensus 608 ~~l~~~~~k~~~f~l~~k~~~ynde~rvk~~v~~~~~vd~~~e~~~Ll~~i~~~~ 662 (834)
++|++++|++|+|+|++++++|+|+.|+|++|++++|+||++|+++||++|++|+
T Consensus 390 ~~~~~~~~k~~~f~~~~k~~~y~~~~r~~~~v~~~~~~d~~~~~~~l~~~i~~~~ 444 (444)
T 4gop_C 390 AALHRAANRMYMFNCRAKMDTFNDTARVRYTISRAAPVDFAKAGMELVDAIRAYM 444 (444)
T ss_dssp HHHHTTSSCEEEEEEEEEEEEETTEEEEEEEEEEEEECCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhCcEEEEEEEEEeeeeCCeeEEEEEEEEeeeCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999985
No 2
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=100.00 E-value=1.3e-50 Score=427.91 Aligned_cols=239 Identities=41% Similarity=0.766 Sum_probs=225.9
Q ss_pred CCceeccccCCCCCceEEEEEEEEeccceeecCCCCCcceEEEEEeeCCCCEEEEEEechHHHhhhhccCcCcEEEEeee
Q 003281 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG 296 (834)
Q Consensus 217 ~~~~pI~~L~p~~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De~g~~I~at~f~~~~d~f~~~l~eG~vy~is~~ 296 (834)
+.++||++|+||+++|+|+|||++||++|+|.+++++|++|+|+|+|++| +|+|++|++.+++|++.|++|+||+|++|
T Consensus 6 ~~~~~I~~L~p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G-~I~at~~~~~~~~~~~~l~~G~vy~i~~~ 84 (246)
T 1jmc_A 6 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG-EIRATAFNEQVDKFFPLIEVNKVYYFSKG 84 (246)
T ss_dssp -CBCCGGGCCTTCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC-EEEEEEEHHHHHHHGGGCCTTCEEEEECC
T ss_pred cceEEHHHCCCCCCceEEEEEEEEecccceeeCCCCCceEEEEEEECCCC-eEEEEEChHHHHHhhhhcccCCEEEECCC
Confidence 46899999999999999999999999999999999999999999999987 99999999999999999999999999999
Q ss_pred EEecCCcccccCCCeEEEEEccCccEEEecCCCCCCccccccccccccccccCCCceeeEEEEEEEecCCeeEEcc-CCc
Q 003281 297 SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRK-NGT 375 (834)
Q Consensus 297 ~V~~a~~~~~~~~~~yeI~f~~~T~I~~~~d~~~~iP~~~~~f~~i~dI~~~~~~~~vDVIGvV~~V~~~~~i~~k-~g~ 375 (834)
+|++++++|++++|+|||.|+.+|+|++|.+ ..++|...|+|++|++|.+++++.+|||||+|++|+++.++++| +|+
T Consensus 85 ~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~~-~~~iP~~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~~~~k~~g~ 163 (246)
T 1jmc_A 85 TLKIANKQFTAVKNDYEMTFNNETSVMPCED-DHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNR 163 (246)
T ss_dssp EEEECCGGGCCCCCSEEEECCTTCEEEECCS-CSCCCCCCCCBCCGGGGGGSCTTCEEEEEEEEEEECCCEEEEETTTTE
T ss_pred EEEEcccCcccCCCCEEEEEcCCcEEEEccC-cccCCcceeeeEEHHHHhcccCCCceeEEEEEEEecCeEEEEEecCCC
Confidence 9999999999999999999999999999965 45799999999999999998889999999999999999999988 799
Q ss_pred eeeEEEEEEeccCCcEEEEEEcCCccchhhhhhhhcccCCCccEEEEEEEEEeecCCeEEEeecceEEEEcCCchHHHHH
Q 003281 376 ETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGKVVGTISTTQLFIEPDFPEAHRL 455 (834)
Q Consensus 376 ~~~kr~i~L~D~s~~si~vtLWg~~a~~~~~~l~~~~~~~~~~Vv~ik~~rV~~f~G~~Ls~~~~S~i~inPd~pe~~~l 455 (834)
+..+|+|+|+|+++.+|+|||||++|+.+ +...++||+|+++||++|+|++|++.++|+|++|||+||+++|
T Consensus 164 ~~~~r~~~l~D~sg~~i~~tLWg~~a~~~--------~~~~~~vv~i~~~~v~~f~g~~ls~~~~s~i~inpd~pe~~~l 235 (246)
T 1jmc_A 164 EVAKRNIYLMDTSGKVVTATLWGEDADKF--------DGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKL 235 (246)
T ss_dssp EEEEEEEEEECTTCCEEEEEEEHHHHHHC--------CCTTCCEEEEEEEEEECTTSSEEECCSSCEEESSCCSHHHHHH
T ss_pred ccEEEEEEEECCCCCEEEEEEEchhhhhc--------ccCCCCEEEEEEEEEEecCCeEEEecCcceEEECCCCHHHHHH
Confidence 99999999999999999999999999864 2356899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCc
Q 003281 456 KEWFEKEGKN 465 (834)
Q Consensus 456 ~~w~~~~g~~ 465 (834)
+.||+++|.+
T Consensus 236 ~~w~~~~g~~ 245 (246)
T 1jmc_A 236 RGWFDAEGQA 245 (246)
T ss_dssp HHHHHHTTC-
T ss_pred HHHHHhcCCc
Confidence 9999998864
No 3
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=100.00 E-value=3.3e-44 Score=359.47 Aligned_cols=177 Identities=38% Similarity=0.710 Sum_probs=164.3
Q ss_pred ccchhccHhhhhhcCCCCCCCCceEEEEEEEEEEecCCeeeeCCCCCcCCCCcCcccccCCCCceecCCCCCccccceEE
Q 003281 480 RADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYR 559 (834)
Q Consensus 480 ~~~~~ktI~ei~~~~lg~~~k~~~~~v~atI~~I~~d~~~Y~aC~~~~~~~~C~KKv~~~~dg~~~CekC~~~~~~~~~r 559 (834)
+.+.+|||+||++++||.+++|+||+|+|+|++|+.++|||+|||.+ .|+|||+++++|.|+|++|++++++|+||
T Consensus 3 ~~~~~kti~qi~~~~lg~~~k~~~f~v~atI~~i~~d~~~Y~aC~~~----~CnKKv~~~~~g~~~CekC~~~~~~~~~r 78 (181)
T 1l1o_C 3 SNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQ----DCNKKVIDQQNGLYRCEKCDTEFPNFKYR 78 (181)
T ss_dssp -CCCBCCHHHHHHHTTTSSSSCEEEEEEEEEEEECCSTTEEEBCCST----TCCCBCEEETTTEEEETTTTEEESSCCEE
T ss_pred CccceEEHHHHhhhccCCCCCCcEEEEEEEEEEEeCCCEEECCCCch----hcCCccccCCCCeEECCCCCCcCCCceEE
Confidence 45679999999999999999999999999999999999999999954 49999998888999999999999999999
Q ss_pred EEEEEEEEeCCCeEEEEEehHHHHHHhCCCHHHHHhhhccCCChhHHHHHHHHhcCceEEEEEEEeecccCccceEEEEE
Q 003281 560 YILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTV 639 (834)
Q Consensus 560 y~l~~~i~D~Tg~~~~~~F~e~ae~llG~sA~el~~l~~ee~d~~~~~~~l~~~~~k~~~f~l~~k~~~ynde~rvk~~v 639 (834)
|+|++.|+|+||++|+++|++.|++|||++|+||.+++ ++|+..|+++|.+++|++|+|+|+++.++|||+.|++++|
T Consensus 79 y~l~~~i~D~Tg~~~~t~F~~~ae~ilG~sA~el~~l~--e~~~~~~~~~~~~~~~~~~~f~l~vk~e~yn~e~r~~~~v 156 (181)
T 1l1o_C 79 MILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELK--DKNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATV 156 (181)
T ss_dssp EEEEEEEECSSCEEEEEEEHHHHHHHHSSCHHHHHHHT--TSCHHHHHHHHHHTTTCEEEEEEEEECCCC-----CEEEE
T ss_pred EEEEEEEEeCCCCEEEEEEhHHHHHHhCCCHHHHHHHH--hhChHHHHHHHHHhcCceEEEEEEEEEeecCCEEEEEEEE
Confidence 99999999999999999999999999999999999998 6788999999999999999999999999999999999999
Q ss_pred EEeeecChHHHHHHHHHHHHhhc
Q 003281 640 VKAERYNYSSETRFILDLMDKLK 662 (834)
Q Consensus 640 ~~~~~vd~~~e~~~Ll~~i~~~~ 662 (834)
++++|+||++|+++|++.|++|.
T Consensus 157 ~~~~~vd~~~e~~~L~~~i~~~~ 179 (181)
T 1l1o_C 157 MDVKPVDYREYGRRLVMSIRRSA 179 (181)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHH
T ss_pred EEeeeCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999874
No 4
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=100.00 E-value=3.4e-40 Score=322.79 Aligned_cols=154 Identities=21% Similarity=0.436 Sum_probs=138.9
Q ss_pred hhccHhhhhhcCCCCCCCCceEEEEEEEEEEecC-CeeeeCCCCCcCCCCcCcccccCCCCceecCCCCCccccceEEEE
Q 003281 483 IRKTVSQIKDEGLGTKEKPDWITVSATIVYIKCD-NFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYI 561 (834)
Q Consensus 483 ~~ktI~ei~~~~lg~~~k~~~~~v~atI~~I~~d-~~~Y~aC~~~~~~~~C~KKv~~~~dg~~~CekC~~~~~~~~~ry~ 561 (834)
.++||+|+++++||.+++ || |+|+|++|+.+ +|+|+||| .|||||++..+|.|+||+|+++ ++|.|||+
T Consensus 7 i~~~i~~~~~e~lG~~~~--~f-v~atI~~Ik~d~~~~Y~ACp------~CnKKV~~~~~g~~~CekC~~~-~~~~~RYi 76 (172)
T 3u50_C 7 IEEIIQQAQASEIGQKKE--FY-VYGNLVSIQMKNKLYYYRCT------CQGKSVLKYHGDSFFCESCQQF-INPQVHLM 76 (172)
T ss_dssp HHHHHHHHHTCCTTCEEE--EE-EEEEEECCCCSSCCEEEECT------TSCCCEEEETTTEEEETTTTEE-CCCEEEEC
T ss_pred HHHHHHHHHHhhCCCCCC--EE-EEEEEEEEcCCCcEEehhch------hhCCEeeeCCCCeEECCCCCCC-CCceEEEE
Confidence 579999999999999887 99 99999999999 99999999 5999999778899999999999 99999999
Q ss_pred EEEEEEeCCCeEEEEEehHHHHHHhCC-C-------HHHH-HhhhccCCC-hhHHHHHHHHhcCceEEEEEEEeecccCc
Q 003281 562 LQFQIQDHTGLTWVTAFQECAEEIMGM-S-------AKDL-YSLKYVDQN-DEKFGEVVRNATFTKYLFKLKVKEETFSD 631 (834)
Q Consensus 562 l~~~i~D~Tg~~~~~~F~e~ae~llG~-s-------A~el-~~l~~ee~d-~~~~~~~l~~~~~k~~~f~l~~k~~~ynd 631 (834)
|++.|+|+||++|+++|++.|++|||+ + |+|| .+|+ ++| +..|+++|.++.|++|+|+||+|+++|||
T Consensus 77 l~~~i~D~TG~~wvt~F~e~ae~ilG~~~~~~~~~~A~eL~~~l~--e~~~~~~~~~~~~~~~~k~~~frlr~k~e~ynd 154 (172)
T 3u50_C 77 LRAFVQDSTGTIPVMIFDQQSSQLINQIDPSIHVQEAGQYVKNCI--ENGQEEIIRQLFSKLDFARFIFEIQFENKEFNN 154 (172)
T ss_dssp EEEEEEETTEEEEEEECHHHHHHHHHHHCTTSCGGGHHHHHHHHH--TTTCHHHHHHHHHTTTTCEEEEEEEEEECC---
T ss_pred EEEEEEeCCCCEEEEEEhHHHHHHhCCCCCccchhhHHHHHHHHH--hcCcHHHHHHHHHhhcCcEEEEEEEEEEcccCC
Confidence 999999999999999999999999999 9 9999 8888 455 89999999999999999999999999999
Q ss_pred cceEEEEEEEeeecChH
Q 003281 632 EQRVKSTVVKAERYNYS 648 (834)
Q Consensus 632 e~rvk~~v~~~~~vd~~ 648 (834)
|.|+|++|++++|+||.
T Consensus 155 e~Rvr~tv~~~~p~~~~ 171 (172)
T 3u50_C 155 EQEIAYKVLKIEKENIK 171 (172)
T ss_dssp ---EEEEEEEEEEC---
T ss_pred EeEEEEEEEEeeecCcC
Confidence 99999999999999995
No 5
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.4e-29 Score=230.54 Aligned_cols=111 Identities=43% Similarity=0.846 Sum_probs=107.1
Q ss_pred CCceeccccCCCCCceEEEEEEEEeccceeecCCCCCcceEEEEEeeCCCCEEEEEEechHHHhhhhccCcCcEEEEeee
Q 003281 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG 296 (834)
Q Consensus 217 ~~~~pI~~L~p~~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De~g~~I~at~f~~~~d~f~~~l~eG~vy~is~~ 296 (834)
++++||++|+||+++|+|+|||++||++|+|.+.+|+|++|+|+|+|++| +|+|++|++++++|+++|+||+||+|++|
T Consensus 2 ~~~~~Is~L~p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G-~I~at~~~~~~~~f~~~l~eG~vy~Is~~ 80 (114)
T 1ynx_A 2 RPIFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSG-EIRATAFNDFATKFNEILQEGKVYYVSKA 80 (114)
T ss_dssp CCBCCGGGCCTTTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTE-EEEEEECHHHHHHHHHHSCSSSEEEEESC
T ss_pred CceEEHHHCCCCCCceEEEEEEEEeccceEEecCCCCceEEEEEEECCCC-eEEEEECHHHHHHHHhhcccCcEEEECCc
Confidence 36899999999999999999999999999999999999999999999987 99999999999999999999999999999
Q ss_pred EEecCCcccccCCCeEEEEEccCccEEEecCC
Q 003281 297 SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYED 328 (834)
Q Consensus 297 ~V~~a~~~~~~~~~~yeI~f~~~T~I~~~~d~ 328 (834)
+|++++++|++++|+|||.|+.+|+|++|.|+
T Consensus 81 ~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~ 112 (114)
T 1ynx_A 81 KLQPAKPQFTNLTHPYELNLDRDTVIEECFDE 112 (114)
T ss_dssp EEEECCTTTSSSSSCEEEEECSSCEEEESCCC
T ss_pred EEEECCCCcccCCCCEEEEECCCCEEEECCCC
Confidence 99999999999999999999999999999653
No 6
>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A
Probab=99.93 E-value=8.3e-26 Score=210.19 Aligned_cols=93 Identities=34% Similarity=0.611 Sum_probs=86.5
Q ss_pred CCeEEEEeeEeeccchhhhhccccceEEEEEccccccccc-ccccchhhhhhcCCcccccEEEEceeeeeccc-CeEEEE
Q 003281 1 MPVLQVMDLKLVVSKQQQQQQHQQQRFRMVLSDGSRSQQG-MLATQRNELVTSGLLQIGSVVRLTKFTCNVIQ-NRMIVI 78 (834)
Q Consensus 1 ~PvlQv~~~k~~~~~~~~~~~~~~~Ryrl~lSDG~~~~~~-mLatqln~lv~~g~l~~gsiv~l~~~~~~~v~-~r~iii 78 (834)
+|||||+++|++.+.+ +.+|||++||||+|++++ |||||||++|++|+|++|+||||++|+|+.++ +|+|||
T Consensus 25 ~PvlQVl~~K~i~~~~------~~~RyRl~lSDG~~~~~~~mLatqln~~v~~g~l~~~sIirl~~y~~~~v~~~k~vli 98 (123)
T 2b29_A 25 KPILQVINIRPITTGN------SPPRYRLLMSDGLNTLSSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTLKDGRRVVI 98 (123)
T ss_dssp CCEEEEEEEEEECCTT------SCCEEEEEEECSSEEEEEEEECGGGHHHHHTTSSCTTCEEEEEEEEEEECSSSCEEEE
T ss_pred CceEEEEeeeecCCCC------CCceEEEEEECcchheeeehhHHHHHHHHhcCCccCCCEEEEEEEEEEEecCCcEEEE
Confidence 5999999999998643 358999999999999998 99999999999999999999999999999999 999999
Q ss_pred EEeeeEecc---CCCCCCCCcCCC
Q 003281 79 VMDLDVIID---KCDPIGKPVPAQ 99 (834)
Q Consensus 79 i~~lev~~~---~~~~ig~P~~~~ 99 (834)
|+++|||.+ .+++||+|+++.
T Consensus 99 Il~levl~~~e~~~~~iG~P~~~~ 122 (123)
T 2b29_A 99 LMELEVLKSAEAVGVKIGNPVPYN 122 (123)
T ss_dssp EEEEEEEECSTTSCSCCSCCEECC
T ss_pred EEeeEEeecccccCCccCCCccCC
Confidence 999999998 568999998764
No 7
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=99.39 E-value=1.3e-12 Score=118.24 Aligned_cols=98 Identities=23% Similarity=0.320 Sum_probs=87.2
Q ss_pred CCceeccccCCCCCceEEEEEEEEeccceeecCCCC-CcceEEEEEeeCCCCEEEEEEechHHHhhhhccCcCcEEEEee
Q 003281 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSR 295 (834)
Q Consensus 217 ~~~~pI~~L~p~~~~w~I~aRV~~Ks~lr~~~n~~g-~Gk~f~~~L~De~g~~I~at~f~~~~d~f~~~l~eG~vy~is~ 295 (834)
..++||++|.|+ .+|+|.|||+.++++|+|.+..| +|+++++.|.|++ |.|++|+|++.++. .|++|++|.| +
T Consensus 3 ~~~~~I~dL~~~-~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~T-G~IrvtlW~~~a~~---~l~~Gdvv~i-~ 76 (105)
T 3dm3_A 3 KDTYNIGELSPG-MTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDET-GSIRVTLWDNLTDI---DVGRGDYVRV-R 76 (105)
T ss_dssp -CEECGGGCCSS-EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETT-EEEEEEEEGGGGGS---CCCTTCEEEE-E
T ss_pred ccceEHHHCCCC-CeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCC-CcEEEEEECccccc---ccCCCCEEEE-E
Confidence 468999999999 78999999999999999988666 5899999999985 59999999998876 7999999999 9
Q ss_pred eEEecCCcccccCCCeEEEEEccCccEEEec
Q 003281 296 GSLKPAQKNFNHLHNDLEIFLDMTSMVQLCY 326 (834)
Q Consensus 296 ~~V~~a~~~~~~~~~~yeI~f~~~T~I~~~~ 326 (834)
+.|+... .+.+||.+...|.|+++.
T Consensus 77 g~vk~~~------~g~~eL~~g~~~~i~~~~ 101 (105)
T 3dm3_A 77 GYIREGY------YGGLECTANYVEILKKGE 101 (105)
T ss_dssp EEEEECT------TSSEEEEEEEEEEEECCC
T ss_pred EEEEEcc------CCCEEEEeCCceEEEecc
Confidence 9998774 258999999999999974
No 8
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=99.38 E-value=4.2e-12 Score=118.02 Aligned_cols=111 Identities=14% Similarity=0.192 Sum_probs=95.0
Q ss_pred ceeccccCCCCCceEEEEEEEEeccceeecCCCCCcceEEEEEeeCCCCEEEEEEechHHHhhhhccCcCcEEEEeeeEE
Q 003281 219 IIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSL 298 (834)
Q Consensus 219 ~~pI~~L~p~~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De~g~~I~at~f~~~~d~f~~~l~eG~vy~is~~~V 298 (834)
+++|++|.|+...|.+.++|+.++++|+|.+.+|++++++++|.|++ |+|++++|++.++ .|++|+||.|.+++|
T Consensus 2 f~~I~dL~~~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~T-G~I~~tlW~~~~~----~~~~G~vv~i~~g~v 76 (119)
T 1o7i_A 2 EEKVGNLKPNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDET-GRVKLTLWGKHAG----SIKEGQVVKIENAWT 76 (119)
T ss_dssp BCCGGGCCTTCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETT-EEEEEEEEGGGTT----CCCTTCEEEEEEEEE
T ss_pred cEEHHHCcCCCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCC-CEEEEEEECChhh----cCCCCCEEEEEeEEE
Confidence 56899999998899999999999999999877776789999999985 6899999998774 589999999999998
Q ss_pred ecCCcccccCCCeEEEEEccCccEEEecCCCCCCccccccccccccccccCC
Q 003281 299 KPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEGMEN 350 (834)
Q Consensus 299 ~~a~~~~~~~~~~yeI~f~~~T~I~~~~d~~~~iP~~~~~f~~i~dI~~~~~ 350 (834)
... .+.++|.+...+.|+++.+ ++|..+++|.+.++
T Consensus 77 ~~~-------~g~~qL~i~~~~~i~~~~~---------~~~~~~~~l~~~~~ 112 (119)
T 1o7i_A 77 TAF-------KGQVQLNAGSKTKIAEASE---------DGFPESSQIPENTP 112 (119)
T ss_dssp EEE-------TTEEEEEECTTCEEEECCC---------TTCCCGGGSCCCCC
T ss_pred EEe-------CCEEEEEECCCEEEEEcCC---------cCCCcHHHhhhcCC
Confidence 754 3679999999999999742 45778888876543
No 9
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=99.30 E-value=1e-11 Score=114.71 Aligned_cols=107 Identities=13% Similarity=0.242 Sum_probs=91.6
Q ss_pred ccccccccccccccCCCceeeEEEEEEEecCCeeEEccCCceeeEEEEEEeccCCcEEEEEEcCCccchhhhhhhhcccC
Q 003281 335 QQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDS 414 (834)
Q Consensus 335 ~~~~f~~i~dI~~~~~~~~vDVIGvV~~V~~~~~i~~k~g~~~~kr~i~L~D~s~~si~vtLWg~~a~~~~~~l~~~~~~ 414 (834)
..|+|++|++|. .+..+|++|+|++++++.++++|+|++..+++++|.|+|| +|++|||++.+..+ ..|
T Consensus 3 ~~~~~~~I~~L~---~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG-~I~~t~w~~~~~~~-~~l------ 71 (115)
T 2k50_A 3 PEHRMDTISKLE---EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTG-ELRAVFWTENIKLL-KKF------ 71 (115)
T ss_dssp CTTCCCCTTTCC---TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTE-EEEEEEETTGGGGG-GTC------
T ss_pred cccceEEHHHCC---CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCC-eEEEEEeCchhhhh-hcC------
Confidence 367889988887 4678899999999999999988899778899999999999 89999999987643 222
Q ss_pred CCccEEEEEEEEEee-cCCe-EEEeecceEEEEcCCchHH
Q 003281 415 GVFPILAVKAGRVSD-FNGK-VVGTISTTQLFIEPDFPEA 452 (834)
Q Consensus 415 ~~~~Vv~ik~~rV~~-f~G~-~Ls~~~~S~i~inPd~pe~ 452 (834)
..+++|.|++++|++ |+|. +|+....+.+.++||+..-
T Consensus 72 ~~G~vv~i~g~~v~~~f~g~~qL~~~~~~~i~~~~~~~~~ 111 (115)
T 2k50_A 72 REGDVIRIKDVNIRGGFGGRKEAHLMPRSTVEVLDPLEHH 111 (115)
T ss_dssp CTTSEEEEEEEEECCCSSSSCEEEECTTCCEEEESSCCC-
T ss_pred CCCCEEEEEeeEEccccCCeEEEEECCCceEEECCccccc
Confidence 368999999999987 9985 9999999999999998654
No 10
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=99.30 E-value=8.8e-12 Score=111.44 Aligned_cols=93 Identities=30% Similarity=0.392 Sum_probs=78.7
Q ss_pred eeccccCCCCCceEEEEEEEEeccceeecCCCC-CcceEEEEEeeCCCCEEEEEEechHHHhhhhccCcCcEEEEeeeEE
Q 003281 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSL 298 (834)
Q Consensus 220 ~pI~~L~p~~~~w~I~aRV~~Ks~lr~~~n~~g-~Gk~f~~~L~De~g~~I~at~f~~~~d~f~~~l~eG~vy~is~~~V 298 (834)
+||++|+|+ .+|+|.+||+.+.++|+|.+..| +++++++.|.|++ |.|++|+|++.++. .|++|++|.| ++.|
T Consensus 3 ~kI~dl~~g-~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeT-G~I~~tlW~~~~~~---~i~~Gdvv~i-~g~v 76 (97)
T 3e0e_A 3 YKISELMPN-LSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDT-GSIRGTLWNELADF---EVKKGDIAEV-SGYV 76 (97)
T ss_dssp ECGGGCCTT-EEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETT-EEEEEEEEGGGGGC---CCCTTCEEEE-EEEE
T ss_pred eEHHHCCCC-CcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCC-CcEEEEEECCcccc---ccCCCCEEEE-EEEE
Confidence 589999999 89999999999999999987665 5899999999984 69999999998876 7999999999 8887
Q ss_pred ecCCcccccCCCeEEEEEccCccEEEe
Q 003281 299 KPAQKNFNHLHNDLEIFLDMTSMVQLC 325 (834)
Q Consensus 299 ~~a~~~~~~~~~~yeI~f~~~T~I~~~ 325 (834)
+... ..+||.+.+++.|+++
T Consensus 77 ~~~~-------~~~el~~g~~~~i~k~ 96 (97)
T 3e0e_A 77 KQGY-------SGLEISVDNIGIIEKS 96 (97)
T ss_dssp EEC---------CEEEEEEEEEEEECC
T ss_pred EEcC-------CeEEEEECCCcEEEEC
Confidence 6442 3789999999999864
No 11
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=99.26 E-value=2.2e-11 Score=113.17 Aligned_cols=103 Identities=21% Similarity=0.357 Sum_probs=86.6
Q ss_pred ccccccccccCCCceeeEEEEEEEecCCeeEEccCCceeeEEEEEEeccCCcEEEEEEcCCccchhhhhhhhcccCCCcc
Q 003281 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFP 418 (834)
Q Consensus 339 f~~i~dI~~~~~~~~vDVIGvV~~V~~~~~i~~k~g~~~~kr~i~L~D~s~~si~vtLWg~~a~~~~~~l~~~~~~~~~~ 418 (834)
|++|+||.. ....||++++|++++++.++++|+|+ ..+++++|.|+|| +|++|||++.+.. | ..++
T Consensus 2 f~~I~dL~~--~~~~v~~~~~V~~~~~~~~~~~k~G~-~~~~~~~l~D~TG-~I~~tlW~~~~~~----~------~~G~ 67 (119)
T 1o7i_A 2 EEKVGNLKP--NMESVNVTVRVLEASEARQIQTKNGV-RTISEAIVGDETG-RVKLTLWGKHAGS----I------KEGQ 67 (119)
T ss_dssp BCCGGGCCT--TCSSEEEEEEEEEECCCEEECCTTCC-EEEEEEEEEETTE-EEEEEEEGGGTTC----C------CTTC
T ss_pred cEEHHHCcC--CCCcEEEEEEEEECCCCeeEEecCCC-EEEEEEEEEeCCC-EEEEEEECChhhc----C------CCCC
Confidence 677888875 23479999999999999999888888 7899999999999 5999999998853 2 2678
Q ss_pred EEEEEEEEEeecCCe-EEEeecceEEEEcCC--chHHHHH
Q 003281 419 ILAVKAGRVSDFNGK-VVGTISTTQLFIEPD--FPEAHRL 455 (834)
Q Consensus 419 Vv~ik~~rV~~f~G~-~Ls~~~~S~i~inPd--~pe~~~l 455 (834)
||.|++++|.+|+|+ +|++...+.|..+++ +|++.+|
T Consensus 68 vv~i~~g~v~~~~g~~qL~i~~~~~i~~~~~~~~~~~~~l 107 (119)
T 1o7i_A 68 VVKIENAWTTAFKGQVQLNAGSKTKIAEASEDGFPESSQI 107 (119)
T ss_dssp EEEEEEEEEEEETTEEEEEECTTCEEEECCCTTCCCGGGS
T ss_pred EEEEEeEEEEEeCCEEEEEECCCEEEEEcCCcCCCcHHHh
Confidence 999999999999996 899999999998774 5555443
No 12
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=99.21 E-value=7.5e-11 Score=106.73 Aligned_cols=93 Identities=20% Similarity=0.275 Sum_probs=78.9
Q ss_pred cccccccccccCCCceeeEEEEEEEecCCeeEEccCCceeeEEEEEEeccCCcEEEEEEcCCccchhhhhhhhcccCCCc
Q 003281 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVF 417 (834)
Q Consensus 338 ~f~~i~dI~~~~~~~~vDVIGvV~~V~~~~~i~~k~g~~~~kr~i~L~D~s~~si~vtLWg~~a~~~~~~l~~~~~~~~~ 417 (834)
+|++|+||.. +..|||+|+|++++++.++++++|++..+|+++|.|+|| +|++|||++.|.. . ..++
T Consensus 4 ~~~~I~dL~~---~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG-~IrvtlW~~~a~~---~------l~~G 70 (105)
T 3dm3_A 4 DTYNIGELSP---GMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETG-SIRVTLWDNLTDI---D------VGRG 70 (105)
T ss_dssp CEECGGGCCS---SEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTE-EEEEEEEGGGGGS---C------CCTT
T ss_pred cceEHHHCCC---CCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC-cEEEEEECccccc---c------cCCC
Confidence 5788888875 478999999999999999999999999999999999999 8999999999974 1 2367
Q ss_pred cEEEEEEEEEeec--CCeEEEeecceEEE
Q 003281 418 PILAVKAGRVSDF--NGKVVGTISTTQLF 444 (834)
Q Consensus 418 ~Vv~ik~~rV~~f--~G~~Ls~~~~S~i~ 444 (834)
.+|.| .++|+.+ ++..|+....|.|.
T Consensus 71 dvv~i-~g~vk~~~~g~~eL~~g~~~~i~ 98 (105)
T 3dm3_A 71 DYVRV-RGYIREGYYGGLECTANYVEILK 98 (105)
T ss_dssp CEEEE-EEEEEECTTSSEEEEEEEEEEEE
T ss_pred CEEEE-EEEEEEccCCCEEEEeCCceEEE
Confidence 89999 7777764 46789988777764
No 13
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=99.20 E-value=1.6e-11 Score=103.35 Aligned_cols=66 Identities=15% Similarity=0.161 Sum_probs=42.0
Q ss_pred cCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCccCCCCCCCCCCCCCcCCCCCCcccccCCCCCC
Q 003281 750 VGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPSLNAAPPAYGSSGIGISAAGYRGAPR 828 (834)
Q Consensus 750 ~GH~a~~Cp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cy~Cg~~GH~ardCp~~~~~~~c~~c~~~g~~~~~cg~~~~ 828 (834)
+||+++||+.+...... ........||+|+++||+|++||.......||.|+..||..+.|.....
T Consensus 2 ~gh~~rdc~~~~~~~~~-------------~~~~r~~~C~~Cg~~GH~a~~C~~~~~~~~C~~Cg~~GH~ar~Cp~~~~ 67 (74)
T 2li8_A 2 SGLVPRGSHMPKGKSMQ-------------KRRSKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKAQ 67 (74)
T ss_dssp ----------CCCCCCC-------------SCCSTTSCCTTTCCSSSCTTTCSSCCCCCCCTTTCCTTSCGGGCTTGGG
T ss_pred CccccCcCCCCCcCccc-------------cccCCCCcccccCCcCcCcccCCCCCCCCccCCcCCcCCccCcCcCCcC
Confidence 69999999998653210 1112446899999999999999986555699999999999999986543
No 14
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=99.16 E-value=1.8e-11 Score=90.18 Aligned_cols=38 Identities=29% Similarity=0.806 Sum_probs=34.3
Q ss_pred cccccCccCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCccCCCCCC
Q 003281 743 SCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPS 803 (834)
Q Consensus 743 ~C~~Cg~~GH~a~~Cp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cy~Cg~~GH~ardCp~ 803 (834)
.||+|++.||++++||.++. ..||+|+++||+|++||+
T Consensus 2 ~C~~Cg~~GH~a~~C~~~~~-----------------------~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQPRQ-----------------------EGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp BCTTTCCBSSCTTTCCSCCC-----------------------SSCTTTCCSSSCTTTSCC
T ss_pred eeeccCCCCcccccCCCCCC-----------------------CccccCCCCCCccCcCcC
Confidence 69999999999999998642 479999999999999985
No 15
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=99.14 E-value=9.7e-11 Score=109.62 Aligned_cols=78 Identities=21% Similarity=0.386 Sum_probs=58.5
Q ss_pred cccccCccCccCCCCCCCCCCCCCCCCCCCCCCCC-CC--CCCCCCCcCcccCCCCccCCCCCCCCCCCCCcCCCCCCcc
Q 003281 743 SCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFS-SG--AGIATSSECYKCHKTGHWARDCPSLNAAPPAYGSSGIGIS 819 (834)
Q Consensus 743 ~C~~Cg~~GH~a~~Cp~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~Cy~Cg~~GH~ardCp~~~~~~~c~~c~~~g~~ 819 (834)
.||+|++.||++++||... +|.++.. +- ..-.....||+|+++||++++||+......||.|++.||.
T Consensus 6 ~C~~C~~~GH~~~~Cp~~~---------C~~Cg~~~gH~~~~C~~~~~C~~Cg~~GH~~~~C~~~~~~~~C~~Cg~~GH~ 76 (124)
T 2lli_A 6 KCNNCSQRGHLKKDCPHII---------CSYCGATDDHYSRHCPKAIQCSKCDEVGHYRSQCPHKWKKVQCTLCKSKKHS 76 (124)
T ss_dssp CCSSCSSSSCCTTTTTSCC---------CTTTCCTTTCCTTTGGGSSCSSSSSCSSSSTTTSCCCCCCCSSSSSCSSCCC
T ss_pred cccCCCCCCcCcccCcCCc---------CcCCCCcCCccCcccCCcccccccCCCCCccccCcCcccCccCCCCCcCCcc
Confidence 7999999999999999842 3444332 11 1111235799999999999999987554589999999999
Q ss_pred cccCCCCCCC
Q 003281 820 AAGYRGAPRQ 829 (834)
Q Consensus 820 ~~~cg~~~~~ 829 (834)
.++|...++.
T Consensus 77 ~~~Cp~~~~~ 86 (124)
T 2lli_A 77 KERCPSIWRA 86 (124)
T ss_dssp TTTCCCSTTS
T ss_pred hhhCCCcccc
Confidence 9999876554
No 16
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=4.1e-11 Score=97.95 Aligned_cols=51 Identities=20% Similarity=0.523 Sum_probs=40.7
Q ss_pred ccccccCccCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCccCCCCCCCCCCCCCcCCCC
Q 003281 742 QSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPSLNAAPPAYGSSG 815 (834)
Q Consensus 742 ~~C~~Cg~~GH~a~~Cp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cy~Cg~~GH~ardCp~~~~~~~c~~c~~ 815 (834)
..||+|+++||++++||.+.. ...||+|+++||+|+|||+... ..++.++.
T Consensus 8 ~~C~~Cg~~GH~a~~C~~~~~----------------------~~~C~~Cg~~GH~ar~Cp~~~~-~~~~~~g~ 58 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKLPPQ----------------------PKKCHFCQSISHMVASCPLKAQ-QGPSAQGS 58 (63)
T ss_dssp CCCSSSCCSSSCTTTCCSCCC----------------------SSCCTTTCCSSSCTTTCTGGGC-SCCCCSCC
T ss_pred CcccccCCCCcChhhCCCCCC----------------------CCccCCcCCcCCccCcCCCccc-cCCccCCC
Confidence 489999999999999998542 2479999999999999998642 24555543
No 17
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=99.12 E-value=2.1e-11 Score=104.84 Aligned_cols=60 Identities=22% Similarity=0.297 Sum_probs=39.6
Q ss_pred ccccccCccCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCccCCCCCCCCCCCCCcCCCCCCcccc
Q 003281 742 QSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPSLNAAPPAYGSSGIGISAA 821 (834)
Q Consensus 742 ~~C~~Cg~~GH~a~~Cp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cy~Cg~~GH~ardCp~~~~~~~c~~c~~~g~~~~ 821 (834)
..||+|++.||++++||+.. .||+|+++||++++|+.+.....||.|++.||..+
T Consensus 6 ~~C~~Cg~~GH~~~~Cp~~~-------------------------rcY~c~~~gh~~~~c~~p~~~~~CYnCG~~GH~~r 60 (83)
T 3nyb_B 6 VQCTLCKSKKHSKERCPSIW-------------------------RAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGD 60 (83)
T ss_dssp -CCSSSCCSSSCGGGCGGGT-------------------------CCCCBC-------------CCCBCSSSSCBSSCGG
T ss_pred CCCCCCCCCCCccccCCCcc-------------------------cccccccCCcccccccCCCCCCeecccCCCCcCcc
Confidence 48999999999999999843 59999999999999987655558999999999999
Q ss_pred cCCCC
Q 003281 822 GYRGA 826 (834)
Q Consensus 822 ~cg~~ 826 (834)
+|...
T Consensus 61 dC~~~ 65 (83)
T 3nyb_B 61 DCKEK 65 (83)
T ss_dssp GCSSC
T ss_pred cCCcc
Confidence 99764
No 18
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=99.08 E-value=4.6e-11 Score=86.91 Aligned_cols=36 Identities=39% Similarity=1.044 Sum_probs=33.1
Q ss_pred cccccCccCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCccCCCCCC
Q 003281 743 SCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPS 803 (834)
Q Consensus 743 ~C~~Cg~~GH~a~~Cp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cy~Cg~~GH~ardCp~ 803 (834)
.||+|+++||++++||.+. .||+|+++||+|++||+
T Consensus 2 ~C~~Cg~~GH~~~~C~~~~-------------------------~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAPK-------------------------VCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp CBSSSCCSSCCTTTSSCBT-------------------------TCSSCCCTTGGGGTTCC
T ss_pred cccccCCCCcchhhCcCcC-------------------------eEccCCCcCCccCcCcC
Confidence 6999999999999999742 69999999999999985
No 19
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=99.07 E-value=9.2e-10 Score=101.56 Aligned_cols=101 Identities=19% Similarity=0.306 Sum_probs=86.5
Q ss_pred CceeccccCCCCCceEEEEEEEEeccceeecCCCC-CcceEEEEEeeCCCCEEEEEEechHHHhhhhccCcCcEEEEeee
Q 003281 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG 296 (834)
Q Consensus 218 ~~~pI~~L~p~~~~w~I~aRV~~Ks~lr~~~n~~g-~Gk~f~~~L~De~g~~I~at~f~~~~d~f~~~l~eG~vy~is~~ 296 (834)
++++|++|.|+.. .+|.++|+.++++|+|.+.+| +++++++.|.|++ |+|++++|++.++.+ +.|++|++|.|++.
T Consensus 6 ~~~~I~~L~~g~~-v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~T-G~I~~t~w~~~~~~~-~~l~~G~vv~i~g~ 82 (115)
T 2k50_A 6 RMDTISKLEEGAE-TPVTGRVMKISSPRTFTTRKGREGKLANVIIADDT-GELRAVFWTENIKLL-KKFREGDVIRIKDV 82 (115)
T ss_dssp CCCCTTTCCTTCE-EEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETT-EEEEEEEETTGGGGG-GTCCTTSEEEEEEE
T ss_pred ceEEHHHCCCCCE-eEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCC-CeEEEEEeCchhhhh-hcCCCCCEEEEEee
Confidence 4678999999854 699999999999999977665 3789999999985 699999999988766 67999999999999
Q ss_pred EEecCCcccccCCCeEEEEEccCccEEEecC
Q 003281 297 SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE 327 (834)
Q Consensus 297 ~V~~a~~~~~~~~~~yeI~f~~~T~I~~~~d 327 (834)
.|+.. |+ ..++|.+...+.|+++++
T Consensus 83 ~v~~~---f~---g~~qL~~~~~~~i~~~~~ 107 (115)
T 2k50_A 83 NIRGG---FG---GRKEAHLMPRSTVEVLDP 107 (115)
T ss_dssp EECCC---SS---SSCEEEECTTCCEEEESS
T ss_pred EEccc---cC---CeEEEEECCCceEEECCc
Confidence 87653 43 468999999999999864
No 20
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=99.07 E-value=3.7e-10 Score=105.64 Aligned_cols=80 Identities=25% Similarity=0.467 Sum_probs=57.2
Q ss_pred cccccCcc-CccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCccCCCCCCCCC---------------
Q 003281 743 SCSSCGAV-GHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPSLNA--------------- 806 (834)
Q Consensus 743 ~C~~Cg~~-GH~a~~Cp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cy~Cg~~GH~ardCp~~~~--------------- 806 (834)
.||+||+. ||++++||...........|++....+... ....||+|++.||+|+|||+...
T Consensus 24 ~C~~Cg~~~gH~~~~C~~~~~C~~Cg~~GH~~~~C~~~~---~~~~C~~Cg~~GH~~~~Cp~~~~~y~~~~~~~~~~~~~ 100 (124)
T 2lli_A 24 ICSYCGATDDHYSRHCPKAIQCSKCDEVGHYRSQCPHKW---KKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKV 100 (124)
T ss_dssp CCTTTCCTTTCCTTTGGGSSCSSSSSCSSSSTTTSCCCC---CCCSSSSSCSSCCCTTTCCCSTTSCCSSSCCCCCCCSC
T ss_pred cCcCCCCcCCccCcccCCcccccccCCCCCccccCcCcc---cCccCCCCCcCCcchhhCCCccccccccCccccccccc
Confidence 68888887 888888887654333344444444433211 23579999999999999998531
Q ss_pred ----CCCCcCCCCCCcccccCCC
Q 003281 807 ----APPAYGSSGIGISAAGYRG 825 (834)
Q Consensus 807 ----~~~c~~c~~~g~~~~~cg~ 825 (834)
...||.|++.||..++|..
T Consensus 101 ~~~~~~~Cy~Cg~~GH~a~dCp~ 123 (124)
T 2lli_A 101 LPFHTIYCYNCGGKGHFGDDCKE 123 (124)
T ss_dssp CCCCCCCTTTTSSSCTTTTTSCC
T ss_pred cCCCCCCcCCCCCCCcCcccCcC
Confidence 2379999999999999963
No 21
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=99.05 E-value=4.9e-11 Score=96.75 Aligned_cols=49 Identities=31% Similarity=0.697 Sum_probs=19.5
Q ss_pred cccccCccCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCccCCCCCCCCC
Q 003281 743 SCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPSLNA 806 (834)
Q Consensus 743 ~C~~Cg~~GH~a~~Cp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cy~Cg~~GH~ardCp~~~~ 806 (834)
.||+|+++||++++||....... .+.....||+|+++||+|+|||+...
T Consensus 3 ~Cf~Cg~~GH~a~~C~~~~~~~~---------------~~~~~~~C~~Cg~~GH~ar~C~~~~~ 51 (60)
T 1cl4_A 3 SCFKCGKKGHFAKNCHEHAHNNA---------------EPKVPGLCPRCKRGKHWANECKSKTD 51 (60)
T ss_dssp -----------------------------------------CCCSCSSCSSCSSCSTTCCCTTS
T ss_pred ccccCCCCCcCHhhCcCCCCCcc---------------ccCCCcceeECCCCCCccCcCCCccc
Confidence 69999999999999998754210 01124589999999999999998753
No 22
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=99.05 E-value=8.8e-11 Score=91.00 Aligned_cols=40 Identities=40% Similarity=0.898 Sum_probs=35.8
Q ss_pred cccccCccCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCccCCCCCCCC
Q 003281 743 SCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPSLN 805 (834)
Q Consensus 743 ~C~~Cg~~GH~a~~Cp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cy~Cg~~GH~ardCp~~~ 805 (834)
.||+||+.||++++||.+.. ..||+|++.||++++||+..
T Consensus 8 ~C~~Cg~~GH~a~~C~~~~~-----------------------~~C~~Cg~~GH~~~~C~~~~ 47 (49)
T 2ec7_A 8 RCWNCGKEGHSARQCRAPRR-----------------------QGCWKCGKTGHVMAKCPERQ 47 (49)
T ss_dssp BCTTTCCBTCCTTTCCCSSC-----------------------CSCSSSCCSSCCGGGCCSSC
T ss_pred eeeecCCCCcChhhCcCCCC-----------------------CeeCcCCCcCCccCCCcCCC
Confidence 89999999999999998642 47999999999999999863
No 23
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=99.04 E-value=1.1e-10 Score=94.93 Aligned_cols=47 Identities=28% Similarity=0.689 Sum_probs=38.3
Q ss_pred ccccccCccCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCccCCCCCCCCC
Q 003281 742 QSCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPSLNA 806 (834)
Q Consensus 742 ~~C~~Cg~~GH~a~~Cp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cy~Cg~~GH~ardCp~~~~ 806 (834)
..||+|+++||++++||...... .....||+|+++||+|+|||+...
T Consensus 5 ~~C~~Cg~~GH~a~~C~~~~~~~------------------~~~~~C~~Cg~~GH~ar~C~~~~~ 51 (61)
T 2ihx_A 5 GLCYTCGSPGHYQAQCPKKRKSG------------------NSRERCQLCNGMGHNAKQCRKRDG 51 (61)
T ss_dssp TBCSSSCCBTCCGGGCTTTTSSS------------------CCCSBCTTTCCBSSCGGGCCCCC-
T ss_pred CcccccCCCCeehhhCcCCcCCC------------------CCCCeeCCCCCCCCCcCCCcCCCc
Confidence 38999999999999999976411 023579999999999999999753
No 24
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=98.98 E-value=1.7e-10 Score=91.79 Aligned_cols=40 Identities=38% Similarity=0.879 Sum_probs=35.9
Q ss_pred cccccCccCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCccCCCCCCCC
Q 003281 743 SCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPSLN 805 (834)
Q Consensus 743 ~C~~Cg~~GH~a~~Cp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cy~Cg~~GH~ardCp~~~ 805 (834)
.||+|++.||++++||.+.. ..||+|+++||+|+|||+..
T Consensus 14 ~C~~Cg~~GH~a~~C~~~~~-----------------------~~C~~Cg~~GH~~~~C~~~~ 53 (55)
T 1a1t_A 14 KCFNCGKEGHIAKNCRAPRK-----------------------KGCWKCGKEGHQMKDCTERQ 53 (55)
T ss_dssp BCTTTCCBSSCGGGCSSCSC-----------------------CBCTTTCCBSSCGGGCSSSC
T ss_pred ceeeeCCCCcChhhcCCCCC-----------------------CEeCCCCCcCCccCCCcCcC
Confidence 89999999999999998642 47999999999999999863
No 25
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=98.93 E-value=5.6e-09 Score=93.18 Aligned_cols=90 Identities=23% Similarity=0.256 Sum_probs=70.2
Q ss_pred ccccccccCCCceeeEEEEEEEecCCeeEEccCCceeeEEEEEEeccCCcEEEEEEcCCccchhhhhhhhcccCCCccEE
Q 003281 341 PINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPIL 420 (834)
Q Consensus 341 ~i~dI~~~~~~~~vDVIGvV~~V~~~~~i~~k~g~~~~kr~i~L~D~s~~si~vtLWg~~a~~~~~~l~~~~~~~~~~Vv 420 (834)
+|+||. ++..++|+|+|++++++.++++++|.+...++++|.|+|| +|++|||++++.. . -.++.+|
T Consensus 4 kI~dl~---~g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG-~I~~tlW~~~~~~---~------i~~Gdvv 70 (97)
T 3e0e_A 4 KISELM---PNLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTG-SIRGTLWNELADF---E------VKKGDIA 70 (97)
T ss_dssp CGGGCC---TTEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTE-EEEEEEEGGGGGC---C------CCTTCEE
T ss_pred EHHHCC---CCCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC-cEEEEEECCcccc---c------cCCCCEE
Confidence 456665 4578999999999999999988899989999999999999 9999999999864 1 2368899
Q ss_pred EEEEEEEeecCC-eEEEeecceEEE
Q 003281 421 AVKAGRVSDFNG-KVVGTISTTQLF 444 (834)
Q Consensus 421 ~ik~~rV~~f~G-~~Ls~~~~S~i~ 444 (834)
.| .++|+.|.| ..|+....+.|.
T Consensus 71 ~i-~g~v~~~~~~~el~~g~~~~i~ 94 (97)
T 3e0e_A 71 EV-SGYVKQGYSGLEISVDNIGIIE 94 (97)
T ss_dssp EE-EEEEEEC--CEEEEEEEEEEEE
T ss_pred EE-EEEEEEcCCeEEEEECCCcEEE
Confidence 99 789988766 478887777664
No 26
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=98.93 E-value=6.6e-10 Score=93.50 Aligned_cols=41 Identities=24% Similarity=0.660 Sum_probs=36.0
Q ss_pred cccccCccCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCccCCCCCCCC
Q 003281 743 SCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPSLN 805 (834)
Q Consensus 743 ~C~~Cg~~GH~a~~Cp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cy~Cg~~GH~ardCp~~~ 805 (834)
.||+||++||++++||.+.. ...||+|+++||+|+|||+..
T Consensus 26 ~C~~Cg~~GH~a~~C~~~~~----------------------~~~C~~Cg~~GH~ar~Cp~~~ 66 (74)
T 2li8_A 26 RCYNCGGLDHHAKECKLPPQ----------------------PKKCHFCQSISHMVASCPLKA 66 (74)
T ss_dssp CCTTTCCSSSCTTTCSSCCC----------------------CCCCTTTCCTTSCGGGCTTGG
T ss_pred cccccCCcCcCcccCCCCCC----------------------CCccCCcCCcCCccCcCcCCc
Confidence 89999999999999997542 247999999999999999863
No 27
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=98.90 E-value=7.4e-09 Score=93.88 Aligned_cols=93 Identities=12% Similarity=0.212 Sum_probs=78.4
Q ss_pred CceeccccCCCCCceEEEEEEEEeccceeecCCCC-CcceEEEEEeeCCCCEEEEEEechHHHhhhhccCcCcEEEEeee
Q 003281 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRG-DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG 296 (834)
Q Consensus 218 ~~~pI~~L~p~~~~w~I~aRV~~Ks~lr~~~n~~g-~Gk~f~~~L~De~g~~I~at~f~~~~d~f~~~l~eG~vy~is~~ 296 (834)
++++|++|.|....+++.++|+.+++.| .. ..| ++++.++.|.|++ |+|++++|++. |++|++|.|.++
T Consensus 2 ~~~kI~dl~pg~~~v~v~~~V~~~~~~~-~~-k~G~~~~v~~~~l~DeT-G~I~~tlW~~~-------l~~Gdvv~i~ng 71 (106)
T 2k75_A 2 DLVKIRDVSLSTPYVSVIGKITGIHKKE-YE-SDGTTKSVYQGYIEDDT-ARIRISSFGKQ-------LQDSDVVRIDNA 71 (106)
T ss_dssp CBCCSTTCCTTCSEEEEEEEEEEEEEEE-EE-ETTEEEEEEEEEEECSS-CEEEEEEESSC-------CCTTEEEEEEEE
T ss_pred CcEEHHHcCCCCceEEEEEEEEEccccc-cc-cCCCeeEEEEEEEEcCC-CeEEEEEEcCc-------cCCCCEEEEEee
Confidence 3678999999988899999999999987 32 233 3469999999985 79999999986 999999999999
Q ss_pred EEecCCcccccCCCeEEEEEccCccEEEecC
Q 003281 297 SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYE 327 (834)
Q Consensus 297 ~V~~a~~~~~~~~~~yeI~f~~~T~I~~~~d 327 (834)
.+..- ...++|.+...+.|+++.+
T Consensus 72 ~v~~~-------~g~~~L~v~~~~~I~~~~~ 95 (106)
T 2k75_A 72 RVAQF-------NGYLSLSVGDSSRIESVNV 95 (106)
T ss_dssp EEEEE-------TTEEEEEECTTSEEEECCS
T ss_pred EEeEE-------CCEEEEEECCcEEEEECCC
Confidence 88643 3578999999999999843
No 28
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=98.82 E-value=1.9e-09 Score=103.51 Aligned_cols=42 Identities=24% Similarity=0.642 Sum_probs=37.0
Q ss_pred cccccCccCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCccCCCCCCCCC
Q 003281 743 SCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPSLNA 806 (834)
Q Consensus 743 ~C~~Cg~~GH~a~~Cp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cy~Cg~~GH~ardCp~~~~ 806 (834)
.||+||+.||+|++||.+.. ...||+|++.||++||||+...
T Consensus 99 ~C~~Cg~~GH~a~~C~~~~~----------------------~~~C~~Cg~~GH~~r~Cp~~~~ 140 (148)
T 3ts2_A 99 RCYNCGGLDHHAKECKLPPQ----------------------PKKCHFCQSINHMVASCPLKAQ 140 (148)
T ss_dssp CCTTTCCSSCCGGGCCSCCC----------------------CCCCTTTCCSSCCGGGCTTTTC
T ss_pred cccEeCCccchhhhCCCCCC----------------------CCcccccCCcCCEeccCcCCCC
Confidence 79999999999999998553 2479999999999999998753
No 29
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=98.79 E-value=4.5e-08 Score=88.68 Aligned_cols=91 Identities=20% Similarity=0.293 Sum_probs=77.4
Q ss_pred ccccccccccccCCCceeeEEEEEEEecCCeeEEccCCceeeEEEEEEeccCCcEEEEEEcCCccchhhhhhhhcccCCC
Q 003281 337 FHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGV 416 (834)
Q Consensus 337 ~~f~~i~dI~~~~~~~~vDVIGvV~~V~~~~~i~~k~g~~~~kr~i~L~D~s~~si~vtLWg~~a~~~~~~l~~~~~~~~ 416 (834)
|+|++|+||.. ....|++++.|.++.+.. .+|+|++...+++.|.|+|| +|++|||++. |+ .
T Consensus 1 ~~~~kI~dl~p--g~~~v~v~~~V~~~~~~~--~~k~G~~~~v~~~~l~DeTG-~I~~tlW~~~-------l~------~ 62 (106)
T 2k75_A 1 SDLVKIRDVSL--STPYVSVIGKITGIHKKE--YESDGTTKSVYQGYIEDDTA-RIRISSFGKQ-------LQ------D 62 (106)
T ss_dssp CCBCCSTTCCT--TCSEEEEEEEEEEEEEEE--EEETTEEEEEEEEEEECSSC-EEEEEEESSC-------CC------T
T ss_pred CCcEEHHHcCC--CCceEEEEEEEEEccccc--cccCCCeeEEEEEEEEcCCC-eEEEEEEcCc-------cC------C
Confidence 57888888875 234699999999999887 46688877899999999999 7999999987 11 5
Q ss_pred ccEEEEEEEEEeecCCe-EEEeecceEEEE
Q 003281 417 FPILAVKAGRVSDFNGK-VVGTISTTQLFI 445 (834)
Q Consensus 417 ~~Vv~ik~~rV~~f~G~-~Ls~~~~S~i~i 445 (834)
+.+|.|+++++..|+|+ +|++...++|..
T Consensus 63 Gdvv~i~ng~v~~~~g~~~L~v~~~~~I~~ 92 (106)
T 2k75_A 63 SDVVRIDNARVAQFNGYLSLSVGDSSRIES 92 (106)
T ss_dssp TEEEEEEEEEEEEETTEEEEEECTTSEEEE
T ss_pred CCEEEEEeeEEeEECCEEEEEECCcEEEEE
Confidence 78999999999999996 899888888764
No 30
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=98.79 E-value=6.1e-08 Score=92.16 Aligned_cols=98 Identities=12% Similarity=0.151 Sum_probs=83.1
Q ss_pred CCceeccccCCCCCceEEEEEEEEeccce---eecCCCC-------CcceEEEEEeeCCCCEEEEEEechHHHhhhhccC
Q 003281 217 SRIIPIAALNPYMGKWTIKARVTAKGELR---HYNNQRG-------DGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVE 286 (834)
Q Consensus 217 ~~~~pI~~L~p~~~~w~I~aRV~~Ks~lr---~~~n~~g-------~Gk~f~~~L~De~g~~I~at~f~~~~d~f~~~l~ 286 (834)
..+++|++|.|.+...+|.|||+..++++ ++.+..| ++++.++.|.|+ .|.|+.|+|++.++ +|+
T Consensus 14 p~~~kI~dL~pg~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDe-TG~I~ftlW~e~~~----~l~ 88 (145)
T 1wjj_A 14 PVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE-TGCILFTARNDQVD----LMK 88 (145)
T ss_dssp CSSCCSTTCCTTCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECS-SCEEEEEECTTHHH----HTC
T ss_pred ccceEHHHcCCCCCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcC-CcEEEEEEecCCcC----cCC
Confidence 45789999999998899999999999988 6654344 678999999998 58999999998765 488
Q ss_pred cCcEEEEeeeEEecCCcccccCCCeEEEEEccCccEEEec
Q 003281 287 AGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCY 326 (834)
Q Consensus 287 eG~vy~is~~~V~~a~~~~~~~~~~yeI~f~~~T~I~~~~ 326 (834)
+|++|.|.++.++.-+ ..++|.++.++.|+...
T Consensus 89 ~Gd~v~i~na~v~~~~-------G~~~L~vgk~g~Ie~~~ 121 (145)
T 1wjj_A 89 PGATVILRNSRIDMFK-------GTMRLGVDKWGRIEATG 121 (145)
T ss_dssp TTCEEEEEEEEEEEET-------TEEEEEECTTCCBCCCS
T ss_pred CCCEEEEeccEEEeEC-------CEEEEEECCCEEEEECC
Confidence 9999999999886432 46899999999999864
No 31
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.63 E-value=2.8e-08 Score=81.11 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=37.4
Q ss_pred CCCcCcccCCCCccCCCCCCCCCCCCCcCCCCCCcccccCCCC
Q 003281 784 TSSECYKCHKTGHWARDCPSLNAAPPAYGSSGIGISAAGYRGA 826 (834)
Q Consensus 784 ~~~~Cy~Cg~~GH~ardCp~~~~~~~c~~c~~~g~~~~~cg~~ 826 (834)
+...||+|+++||+|++||.+.....||.|+..||..++|...
T Consensus 6 r~~~C~~Cg~~GH~a~~C~~~~~~~~C~~Cg~~GH~ar~Cp~~ 48 (63)
T 2cqf_A 6 SGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLK 48 (63)
T ss_dssp SCCCCSSSCCSSSCTTTCCSCCCSSCCTTTCCSSSCTTTCTGG
T ss_pred CCCcccccCCCCcChhhCCCCCCCCccCCcCCcCCccCcCCCc
Confidence 4568999999999999999865445899999999999999764
No 32
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=98.59 E-value=1.6e-08 Score=86.88 Aligned_cols=42 Identities=17% Similarity=0.304 Sum_probs=25.4
Q ss_pred cccccCccCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCccCCCCCCCCC
Q 003281 743 SCSSCGAVGHSSMNCPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTGHWARDCPSLNA 806 (834)
Q Consensus 743 ~C~~Cg~~GH~a~~Cp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cy~Cg~~GH~ardCp~~~~ 806 (834)
.||+|+..||++++|+.+.. ...||+||+.|||++|||+...
T Consensus 26 rcY~c~~~gh~~~~c~~p~~----------------------~~~CYnCG~~GH~~rdC~~~r~ 67 (83)
T 3nyb_B 26 RAYILVDDNEKAKPKVLPFH----------------------TIYCYNCGGKGHFGDDCKEKRS 67 (83)
T ss_dssp CCCCBC-------------C----------------------CCBCSSSSCBSSCGGGCSSCCS
T ss_pred cccccccCCcccccccCCCC----------------------CCeecccCCCCcCcccCCcccc
Confidence 79999999999999987643 2579999999999999999864
No 33
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=98.59 E-value=3.5e-08 Score=72.50 Aligned_cols=37 Identities=24% Similarity=0.440 Sum_probs=33.4
Q ss_pred cCcccCCCCccCCCCCCCCCCCCCcCCCCCCcccccCC
Q 003281 787 ECYKCHKTGHWARDCPSLNAAPPAYGSSGIGISAAGYR 824 (834)
Q Consensus 787 ~Cy~Cg~~GH~ardCp~~~~~~~c~~c~~~g~~~~~cg 824 (834)
.||+|+++||+|++||++.. ..||+|++.||..++|.
T Consensus 2 ~C~~Cg~~GH~a~~C~~~~~-~~C~~Cg~~GH~~~~C~ 38 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQPRQ-EGCWNCGSKEHRFAQCP 38 (39)
T ss_dssp BCTTTCCBSSCTTTCCSCCC-SSCTTTCCSSSCTTTSC
T ss_pred eeeccCCCCcccccCCCCCC-CccccCCCCCCccCcCc
Confidence 59999999999999998742 48999999999999996
No 34
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=98.57 E-value=6.6e-08 Score=74.75 Aligned_cols=42 Identities=24% Similarity=0.438 Sum_probs=36.5
Q ss_pred CCcCcccCCCCccCCCCCCCCCCCCCcCCCCCCcccccCCCCC
Q 003281 785 SSECYKCHKTGHWARDCPSLNAAPPAYGSSGIGISAAGYRGAP 827 (834)
Q Consensus 785 ~~~Cy~Cg~~GH~ardCp~~~~~~~c~~c~~~g~~~~~cg~~~ 827 (834)
...||+|++.||++++||.+.. ..||.|+..||..++|....
T Consensus 6 ~~~C~~Cg~~GH~a~~C~~~~~-~~C~~Cg~~GH~~~~C~~~~ 47 (49)
T 2ec7_A 6 VIRCWNCGKEGHSARQCRAPRR-QGCWKCGKTGHVMAKCPERQ 47 (49)
T ss_dssp CCBCTTTCCBTCCTTTCCCSSC-CSCSSSCCSSCCGGGCCSSC
T ss_pred cCeeeecCCCCcChhhCcCCCC-CeeCcCCCcCCccCCCcCCC
Confidence 3579999999999999999742 48999999999999998643
No 35
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=98.54 E-value=4.7e-08 Score=70.90 Aligned_cols=35 Identities=26% Similarity=0.579 Sum_probs=32.5
Q ss_pred cCcccCCCCccCCCCCCCCCCCCCcCCCCCCcccccCC
Q 003281 787 ECYKCHKTGHWARDCPSLNAAPPAYGSSGIGISAAGYR 824 (834)
Q Consensus 787 ~Cy~Cg~~GH~ardCp~~~~~~~c~~c~~~g~~~~~cg 824 (834)
.||+|+++||++++||.+ ..||+|++.||..++|.
T Consensus 2 ~C~~Cg~~GH~~~~C~~~---~~C~~Cg~~GH~a~~C~ 36 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAP---KVCFKCKQPGHFSKQCR 36 (37)
T ss_dssp CBSSSCCSSCCTTTSSCB---TTCSSCCCTTGGGGTTC
T ss_pred cccccCCCCcchhhCcCc---CeEccCCCcCCccCcCc
Confidence 699999999999999986 38999999999999996
No 36
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=98.51 E-value=3.9e-08 Score=79.55 Aligned_cols=41 Identities=22% Similarity=0.402 Sum_probs=17.4
Q ss_pred CcCcccCCCCccCCCCCCCCC-------CCCCcCCCCCCcccccCCCC
Q 003281 786 SECYKCHKTGHWARDCPSLNA-------APPAYGSSGIGISAAGYRGA 826 (834)
Q Consensus 786 ~~Cy~Cg~~GH~ardCp~~~~-------~~~c~~c~~~g~~~~~cg~~ 826 (834)
..||+|+++||+|++||.... ...||+|++.||.+++|...
T Consensus 2 ~~Cf~Cg~~GH~a~~C~~~~~~~~~~~~~~~C~~Cg~~GH~ar~C~~~ 49 (60)
T 1cl4_A 2 GSCFKCGKKGHFAKNCHEHAHNNAEPKVPGLCPRCKRGKHWANECKSK 49 (60)
T ss_dssp ---------------------------CCCSCSSCSSCSSCSTTCCCT
T ss_pred CccccCCCCCcCHhhCcCCCCCccccCCCcceeECCCCCCccCcCCCc
Confidence 369999999999999998742 34899999999999999864
No 37
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=98.45 E-value=1.2e-05 Score=86.25 Aligned_cols=226 Identities=13% Similarity=0.060 Sum_probs=136.9
Q ss_pred CCceeccccCCCCCceEEEEEEEEeccceeecCCCCCcceEEEEEeeCCCCEEEEEEechHHHhhhhccCcCcEEEEeee
Q 003281 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG 296 (834)
Q Consensus 217 ~~~~pI~~L~p~~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De~g~~I~at~f~~~~d~f~~~l~eG~vy~is~~ 296 (834)
-.++||++|.. .....|.|.|+.....+.. +|.....+|.|.|..-..|.+.+|.+..+.+-...++|+|+.+.++
T Consensus 4 y~y~~l~~l~~-~~~vnvigVV~~~~~p~~s---~G~d~~~tl~I~D~S~~gl~v~iF~~~~~~LP~v~~~GDII~l~~v 79 (294)
T 1xjv_A 4 YIYTPLNQLKG-GTIVNVYGVVKFFKPPYLS---KGTDYCSVVTIVDQTNVKLTCLLFSGNYEALPIIYKNGDIVRFHRL 79 (294)
T ss_dssp CCCCCGGGCCS-SEEEEEEEEEEEEEEEEEC---SSSSEEEEEEEECTTCCEEEEEEEESSGGGSCCCCSTTCEEEEEEE
T ss_pred ceEEEHHHhhC-CCeeEEEEEEEEcCCCccC---CCCeEEEEEEEEcCCCCCEEEEEECCChHHCCCCCCCCCEEEEEEE
Confidence 35789999964 5678999999987766543 4556888999999877789999998877777766799999999999
Q ss_pred EEecCCcccccCCCeEEEEEccCccEEEecCCC-CC-Ccc---cccccc----------------------ccccccccC
Q 003281 297 SLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDD-AS-IPR---QQFHFR----------------------PINDVEGME 349 (834)
Q Consensus 297 ~V~~a~~~~~~~~~~yeI~f~~~T~I~~~~d~~-~~-iP~---~~~~f~----------------------~i~dI~~~~ 349 (834)
+|+.-+... .+..+....+-...... .. .|. ..|.|. ++..|.++.
T Consensus 80 ki~~~~g~~-------~~v~~~~~s~~~f~g~~~~~~~p~~~~~~~~~~~~e~~~~~~Lr~w~~~~~~~~~~~~~L~di~ 152 (294)
T 1xjv_A 80 KIQVYKKET-------QGITSSGFASLTFEGTLGAPIIPRTSSKYFNFTTEDHKMVEALRVWASTHMSPSWTLLKLCDVQ 152 (294)
T ss_dssp EEEEETTEE-------EEEEEEEEEEEEECCSTTCCCCCBCSCSSCCCCHHHHHHHHHHHHHHHHHCC---CCCCGGGCC
T ss_pred EEEEECCeE-------EEEccCCeEEEEECCCCCCCcCCcccCCCcCCCHHHHHHHHHHHHHHHhccCCCCceeEHHHcc
Confidence 998654322 22222211111111100 00 111 011111 223344444
Q ss_pred CCceeeEEEEEEEecCCe--eE--EccCCceeeEEEEEEec--------c------CCcEEEEEEcCCccchhhhhhhhc
Q 003281 350 NNSVVDLIGVVSYISPTA--SL--MRKNGTETQKRTLHLRD--------M------SGRSVELTLWGNFCNDDGLRLQHM 411 (834)
Q Consensus 350 ~~~~vDVIGvV~~V~~~~--~i--~~k~g~~~~kr~i~L~D--------~------s~~si~vtLWg~~a~~~~~~l~~~ 411 (834)
.+.++|+++.|+.+.... .+ .-.||+......+...+ . ...++.|++|++++.. .+.
T Consensus 153 ~~~f~DLv~qVv~v~~~~~~~~~LyVwDgT~~~~~~~~~~~~~~~~~gd~~~~~~~~~lt~~V~~~d~h~~~-~~~---- 227 (294)
T 1xjv_A 153 PMQYFDLTCQLLGKAEVDGASFLLKVWDGTRTPFPSWRVLIQDLVLEGDLSHIHRLQNLTIDILVYDNHVHV-ARS---- 227 (294)
T ss_dssp SSCEEEEEEEEEEEEECSSSEEEEEEECSSCCSSCBCCCCCCSSCCEECHHHHHHHGGGSEEEEEETTHHHH-HHH----
T ss_pred cCCeeeEEEEEEEEEecCCCeEEEEEECCCCCCCCccccccccccccCcccccccccCeeEEEEEEcchhHH-Hhc----
Confidence 678999999999886431 11 12255443222222111 1 1237999999999842 122
Q ss_pred ccCCCccEEEEEEEEEeec--------CCe-E--EE--eecceEEEEcC-CchHHHHHHHHHH
Q 003281 412 CDSGVFPILAVKAGRVSDF--------NGK-V--VG--TISTTQLFIEP-DFPEAHRLKEWFE 460 (834)
Q Consensus 412 ~~~~~~~Vv~ik~~rV~~f--------~G~-~--Ls--~~~~S~i~inP-d~pe~~~l~~w~~ 460 (834)
-..+..|.|.+++++.- ++. . |. ....++|.+-| +.+++.+++++++
T Consensus 228 --lk~Gd~V~l~Nv~~k~~~~~~~~~~~~~le~~lh~~~~~~~~i~~l~~~~~~~~~~~~~~~ 288 (294)
T 1xjv_A 228 --LKVGSFLRIYSLHTKLQSMNSENQTMLSLEFHLHGGTSYGRGIRVLPESNSDVDQLKKDLE 288 (294)
T ss_dssp --CCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEECSSCGGGCEEEEECTTSHHHHHHHHHHH
T ss_pred --CCCCcEEEEeeeEEEecccccccCCCcceEEEEecCcccCcEeEEecCCCCCHHHHHHHHh
Confidence 23678999999887643 221 1 21 12346676655 5677888888775
No 38
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=98.42 E-value=1.3e-07 Score=74.99 Aligned_cols=41 Identities=20% Similarity=0.482 Sum_probs=36.1
Q ss_pred CCcCcccCCCCccCCCCCCCCCCCCCcCCCCCCcccccCCCC
Q 003281 785 SSECYKCHKTGHWARDCPSLNAAPPAYGSSGIGISAAGYRGA 826 (834)
Q Consensus 785 ~~~Cy~Cg~~GH~ardCp~~~~~~~c~~c~~~g~~~~~cg~~ 826 (834)
...||+|++.||+|++||.+.. ..||.|+..||..+.|...
T Consensus 12 ~~~C~~Cg~~GH~a~~C~~~~~-~~C~~Cg~~GH~~~~C~~~ 52 (55)
T 1a1t_A 12 TVKCFNCGKEGHIAKNCRAPRK-KGCWKCGKEGHQMKDCTER 52 (55)
T ss_dssp TCBCTTTCCBSSCGGGCSSCSC-CBCTTTCCBSSCGGGCSSS
T ss_pred CcceeeeCCCCcChhhcCCCCC-CEeCCCCCcCCccCCCcCc
Confidence 4579999999999999998743 4899999999999999764
No 39
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=98.42 E-value=1.6e-05 Score=82.96 Aligned_cols=177 Identities=13% Similarity=0.051 Sum_probs=122.6
Q ss_pred cccccccccccCCCceeeEEEEEEEecCCeeEEccCCceeeEEEEEEeccCCcEEEEEEcCCccchhhhhhhhcccCCCc
Q 003281 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVF 417 (834)
Q Consensus 338 ~f~~i~dI~~~~~~~~vDVIGvV~~V~~~~~i~~k~g~~~~kr~i~L~D~s~~si~vtLWg~~a~~~~~~l~~~~~~~~~ 417 (834)
.+.+|++|.... ....|.|.|+.++++.++...+ .+....++.|.|++| .|++|+|++.+..+...|+ .+
T Consensus 7 ~~~~I~~L~p~~--~~w~I~~rV~~k~~~r~~~~~~-~~g~~~~~~L~De~G-~I~at~~~~~~~~~~~~l~------~G 76 (246)
T 1jmc_A 7 KVVPIASLTPYQ--SKWTICARVTNKSQIRTWSNSR-GEGKLFSLELVDESG-EIRATAFNEQVDKFFPLIE------VN 76 (246)
T ss_dssp CBCCGGGCCTTC--CCCEEEEEEEEECCCEEEECSS-CEEEEEEEEEECSSC-EEEEEEEHHHHHHHGGGCC------TT
T ss_pred ceEEHHHCCCCC--CceEEEEEEEEecccceeeCCC-CCceEEEEEEECCCC-eEEEEEChHHHHHhhhhcc------cC
Confidence 578888886533 3578999999999999887544 356678999999999 9999999999887655543 67
Q ss_pred cEEEEEEEEEeecCC--------eEEEeecceEEEEcCCchHHHHHHHHHHhcCCccceeeeccccccCCccchhccHhh
Q 003281 418 PILAVKAGRVSDFNG--------KVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQ 489 (834)
Q Consensus 418 ~Vv~ik~~rV~~f~G--------~~Ls~~~~S~i~inPd~pe~~~l~~w~~~~g~~~~~~sls~~~~~~~~~~~~ktI~e 489 (834)
.++.|.+++|+..++ ..|.....|.|..-++.+. .+. .......|++
T Consensus 77 ~vy~i~~~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~~~~~--------------iP~-----------~~~~f~~i~~ 131 (246)
T 1jmc_A 77 KVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDHH--------------LPT-----------VQFDFTGIDD 131 (246)
T ss_dssp CEEEEECCEEEECCGGGCCCCCSEEEECCTTCEEEECCSCSC--------------CCC-----------CCCCBCCGGG
T ss_pred CEEEECCCEEEEcccCcccCCCCEEEEEcCCcEEEEccCccc--------------CCc-----------ceeeeEEHHH
Confidence 899999999986432 2566666677765443210 000 0123456788
Q ss_pred hhhcCCCCCCCCceEEEEEEEEEEecCCeeeeCCCCCcCCCCcCcccccCCCCceecCCCCCccccceEEEEEEEEEEeC
Q 003281 490 IKDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDH 569 (834)
Q Consensus 490 i~~~~lg~~~k~~~~~v~atI~~I~~d~~~Y~aC~~~~~~~~C~KKv~~~~dg~~~CekC~~~~~~~~~ry~l~~~i~D~ 569 (834)
|.+. +...++.|.|.|..+..-.-.. .. .+| ....+..+.|.|.
T Consensus 132 i~~~-----~~~~~vDViG~V~~v~~~~~~~-~k----------------~~g--------------~~~~~r~~~l~D~ 175 (246)
T 1jmc_A 132 LENK-----SKDSLVDIIGICKSYEDATKIT-VR----------------SNN--------------REVAKRNIYLMDT 175 (246)
T ss_dssp GGGS-----CTTCEEEEEEEEEEECCCEEEE-ET----------------TTT--------------EEEEEEEEEEECT
T ss_pred Hhcc-----cCCCceeEEEEEEEecCeEEEE-Ee----------------cCC--------------CccEEEEEEEECC
Confidence 8762 2234788999999887421110 00 011 1245779999999
Q ss_pred CCe-EEEEEehHHHHHH
Q 003281 570 TGL-TWVTAFQECAEEI 585 (834)
Q Consensus 570 Tg~-~~~~~F~e~ae~l 585 (834)
||. +.+++|++.|+.+
T Consensus 176 sg~~i~~tLWg~~a~~~ 192 (246)
T 1jmc_A 176 SGKVVTATLWGEDADKF 192 (246)
T ss_dssp TCCEEEEEEEHHHHHHC
T ss_pred CCCEEEEEEEchhhhhc
Confidence 995 9999999999774
No 40
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=98.42 E-value=2.6e-06 Score=77.53 Aligned_cols=92 Identities=17% Similarity=0.132 Sum_probs=74.6
Q ss_pred CceeccccCCCCCceEEEEEEEEeccceeecCCCCCcceEEEEEeeCCCCEEEEEEechHHHhhhhccCcCcEEEEeeeE
Q 003281 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGS 297 (834)
Q Consensus 218 ~~~pI~~L~p~~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De~g~~I~at~f~~~~d~f~~~l~eG~vy~is~~~ 297 (834)
++++|++|.|......+.+||+.+++.+. ......++|.|+ .|.|++|+|++. -.+.|++|++|.|.++.
T Consensus 4 ~~~kI~dl~~~~~~v~v~~~V~~~~~~~~------~~~~~~~~l~De-TG~I~~t~W~~~---~~~~~~~G~~V~i~n~~ 73 (109)
T 2kbn_A 4 QLTKIVDIVENGQWANLKAKVIQLWENTH------ESISQVGLLGDE-TGIIKFTIWKNA---ELPLLEQGESYLLRSVV 73 (109)
T ss_dssp CBCCTTTCCSTTCEEEEEEEEEEEEECCC------SSEEEEEEEECT-TCCEEEEEEGGG---CCCCCCTTCEEEEEEEE
T ss_pred CceEHHHCCCCCCcEEEEEEEEEeEcCCC------CeEEEEEEEECC-CCeEEEEEECcc---cccccCCCCEEEEEEEE
Confidence 46789999998788899999999887431 245567899998 579999999943 23579999999999999
Q ss_pred EecCCcccccCCCeEEEEEccCccEEEec
Q 003281 298 LKPAQKNFNHLHNDLEIFLDMTSMVQLCY 326 (834)
Q Consensus 298 V~~a~~~~~~~~~~yeI~f~~~T~I~~~~ 326 (834)
+..-+ ..++|.++..+.|++..
T Consensus 74 v~~~~-------G~~~L~v~~~~~I~~~~ 95 (109)
T 2kbn_A 74 VGEYN-------DRFQVQVNKNSSIEKLS 95 (109)
T ss_dssp EEEET-------TEEEEEECSSSEEEECS
T ss_pred EEEEC-------CEEEEEECCceEEEECC
Confidence 87643 46899999999999864
No 41
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=98.41 E-value=1.7e-07 Score=75.93 Aligned_cols=42 Identities=26% Similarity=0.574 Sum_probs=36.0
Q ss_pred CCcCcccCCCCccCCCCCCCCC----CCCCcCCCCCCcccccCCCC
Q 003281 785 SSECYKCHKTGHWARDCPSLNA----APPAYGSSGIGISAAGYRGA 826 (834)
Q Consensus 785 ~~~Cy~Cg~~GH~ardCp~~~~----~~~c~~c~~~g~~~~~cg~~ 826 (834)
...||+|+++||+|++||.... ...||.|++.||.+++|...
T Consensus 4 ~~~C~~Cg~~GH~a~~C~~~~~~~~~~~~C~~Cg~~GH~ar~C~~~ 49 (61)
T 2ihx_A 4 RGLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCNGMGHNAKQCRKR 49 (61)
T ss_dssp TTBCSSSCCBTCCGGGCTTTTSSSCCCSBCTTTCCBSSCGGGCCCC
T ss_pred CCcccccCCCCeehhhCcCCcCCCCCCCeeCCCCCCCCCcCCCcCC
Confidence 3579999999999999999743 13699999999999999753
No 42
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=98.36 E-value=1.1e-06 Score=83.50 Aligned_cols=100 Identities=11% Similarity=0.058 Sum_probs=78.8
Q ss_pred ccccccccccccccCCCceeeEEEEEEEecCCe---eEEccCCc------eeeEEEEEEeccCCcEEEEEEcCCccchhh
Q 003281 335 QQFHFRPINDVEGMENNSVVDLIGVVSYISPTA---SLMRKNGT------ETQKRTLHLRDMSGRSVELTLWGNFCNDDG 405 (834)
Q Consensus 335 ~~~~f~~i~dI~~~~~~~~vDVIGvV~~V~~~~---~i~~k~g~------~~~kr~i~L~D~s~~si~vtLWg~~a~~~~ 405 (834)
..-.|++|.||..- ..-++|.+.|.++.++. +..+++|. +...+++.|.|+|| .|.+|||++++..+
T Consensus 12 ~kp~~~kI~dL~pg--~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG-~I~ftlW~e~~~~l- 87 (145)
T 1wjj_A 12 RKPVFVKVEQLKPG--TTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETG-CILFTARNDQVDLM- 87 (145)
T ss_dssp CCCSSCCSTTCCTT--CCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSC-EEEEEECTTHHHHT-
T ss_pred cCccceEHHHcCCC--CCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCc-EEEEEEecCCcCcC-
Confidence 34568999999763 34699999999999876 33333564 66788999999999 79999999987531
Q ss_pred hhhhhcccCCCccEEEEEEEEEeecCCe-EEEeecceEEEEcC
Q 003281 406 LRLQHMCDSGVFPILAVKAGRVSDFNGK-VVGTISTTQLFIEP 447 (834)
Q Consensus 406 ~~l~~~~~~~~~~Vv~ik~~rV~~f~G~-~Ls~~~~S~i~inP 447 (834)
..+.+|.|+++.++.|+|+ .|.+...++|...+
T Consensus 88 ---------~~Gd~v~i~na~v~~~~G~~~L~vgk~g~Ie~~~ 121 (145)
T 1wjj_A 88 ---------KPGATVILRNSRIDMFKGTMRLGVDKWGRIEATG 121 (145)
T ss_dssp ---------CTTCEEEEEEEEEEEETTEEEEEECTTCCBCCCS
T ss_pred ---------CCCCEEEEeccEEEeECCEEEEEECCCEEEEECC
Confidence 2678999999999999997 88888777776533
No 43
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=98.35 E-value=2.5e-07 Score=88.82 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=38.7
Q ss_pred CcCcccCCCCccCCCCCCCCCCCCCcCCCCCCcccccCCCCCCC
Q 003281 786 SECYKCHKTGHWARDCPSLNAAPPAYGSSGIGISAAGYRGAPRQ 829 (834)
Q Consensus 786 ~~Cy~Cg~~GH~ardCp~~~~~~~c~~c~~~g~~~~~cg~~~~~ 829 (834)
..||+|++.||+|++||.......||.|+..||..+.|....++
T Consensus 98 ~~C~~Cg~~GH~a~~C~~~~~~~~C~~Cg~~GH~~r~Cp~~~~~ 141 (148)
T 3ts2_A 98 DRCYNCGGLDHHAKECKLPPQPKKCHFCQSINHMVASCPLKAQQ 141 (148)
T ss_dssp CCCTTTCCSSCCGGGCCSCCCCCCCTTTCCSSCCGGGCTTTTC-
T ss_pred CcccEeCCccchhhhCCCCCCCCcccccCCcCCEeccCcCCCCC
Confidence 47999999999999999976667999999999999999976554
No 44
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=98.24 E-value=6.4e-06 Score=74.87 Aligned_cols=90 Identities=16% Similarity=0.140 Sum_probs=68.9
Q ss_pred ccccccccccCCCceeeEEEEEEEecCCeeEEccCCceeeEEEEEEeccCCcEEEEEEcCCccchhhhhhhhcccCCCcc
Q 003281 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFP 418 (834)
Q Consensus 339 f~~i~dI~~~~~~~~vDVIGvV~~V~~~~~i~~k~g~~~~kr~i~L~D~s~~si~vtLWg~~a~~~~~~l~~~~~~~~~~ 418 (834)
|++|+||.. .+..|+++|+|+++.+. +++ ...+.+.|.|+|| +|++|||++.... . -..+.
T Consensus 5 ~~kI~dl~~--~~~~v~v~~~V~~~~~~-----~~~--~~~~~~~l~DeTG-~I~~t~W~~~~~~---~------~~~G~ 65 (109)
T 2kbn_A 5 LTKIVDIVE--NGQWANLKAKVIQLWEN-----THE--SISQVGLLGDETG-IIKFTIWKNAELP---L------LEQGE 65 (109)
T ss_dssp BCCTTTCCS--TTCEEEEEEEEEEEEEC-----CCS--SEEEEEEEECTTC-CEEEEEEGGGCCC---C------CCTTC
T ss_pred ceEHHHCCC--CCCcEEEEEEEEEeEcC-----CCC--eEEEEEEEECCCC-eEEEEEECccccc---c------cCCCC
Confidence 566777764 25789999999999863 233 3467899999999 7999999944321 1 12678
Q ss_pred EEEEEEEEEeecCCe-EEEeecceEEEEcC
Q 003281 419 ILAVKAGRVSDFNGK-VVGTISTTQLFIEP 447 (834)
Q Consensus 419 Vv~ik~~rV~~f~G~-~Ls~~~~S~i~inP 447 (834)
+|.|+++++.+|+|+ +|++...+.|..-+
T Consensus 66 ~V~i~n~~v~~~~G~~~L~v~~~~~I~~~~ 95 (109)
T 2kbn_A 66 SYLLRSVVVGEYNDRFQVQVNKNSSIEKLS 95 (109)
T ss_dssp EEEEEEEEEEEETTEEEEEECSSSEEEECS
T ss_pred EEEEEEEEEEEECCEEEEEECCceEEEECC
Confidence 999999999999996 89988888886533
No 45
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=98.14 E-value=4.7e-05 Score=81.62 Aligned_cols=143 Identities=12% Similarity=0.197 Sum_probs=98.1
Q ss_pred cccccccccccccCCCceeeEEEEEEEecCCeeEEccCCceeeEEEEEEeccCCcEEEEEEcCCccchhhhhhhhcccCC
Q 003281 336 QFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSG 415 (834)
Q Consensus 336 ~~~f~~i~dI~~~~~~~~vDVIGvV~~V~~~~~i~~k~g~~~~kr~i~L~D~s~~si~vtLWg~~a~~~~~~l~~~~~~~ 415 (834)
.|.|++|++|. .+..|+|||+|+++.++.. + .|+ -....|+|+|.|...|.|.+|.+..+.+... ..
T Consensus 3 ~y~y~~l~~l~---~~~~vnvigVV~~~~~p~~--s-~G~-d~~~tl~I~D~S~~gl~v~iF~~~~~~LP~v------~~ 69 (294)
T 1xjv_A 3 NYIYTPLNQLK---GGTIVNVYGVVKFFKPPYL--S-KGT-DYCSVVTIVDQTNVKLTCLLFSGNYEALPII------YK 69 (294)
T ss_dssp CCCCCCGGGCC---SSEEEEEEEEEEEEEEEEE--C-SSS-SEEEEEEEECTTCCEEEEEEEESSGGGSCCC------CS
T ss_pred cceEEEHHHhh---CCCeeEEEEEEEEcCCCcc--C-CCC-eEEEEEEEEcCCCCCEEEEEECCChHHCCCC------CC
Confidence 57899999884 4789999999999987642 2 454 4678999999998889999999876654321 13
Q ss_pred CccEEEEEEEEEeecCCe-EE-EeecceEEEEcCCc--------------------hHHHHHHHHHHhcCCccceeeecc
Q 003281 416 VFPILAVKAGRVSDFNGK-VV-GTISTTQLFIEPDF--------------------PEAHRLKEWFEKEGKNTQSVSISR 473 (834)
Q Consensus 416 ~~~Vv~ik~~rV~~f~G~-~L-s~~~~S~i~inPd~--------------------pe~~~l~~w~~~~g~~~~~~sls~ 473 (834)
.+.||.+++++|..|+|+ .+ +....+.+.++... .-+..||.|+.+.-. .+
T Consensus 70 ~GDII~l~~vki~~~~g~~~~v~~~~~s~~~f~g~~~~~~~p~~~~~~~~~~~~e~~~~~~Lr~w~~~~~~------~~- 142 (294)
T 1xjv_A 70 NGDIVRFHRLKIQVYKKETQGITSSGFASLTFEGTLGAPIIPRTSSKYFNFTTEDHKMVEALRVWASTHMS------PS- 142 (294)
T ss_dssp TTCEEEEEEEEEEEETTEEEEEEEEEEEEEEECCSTTCCCCCBCSCSSCCCCHHHHHHHHHHHHHHHHHCC---------
T ss_pred CCCEEEEEEEEEEEECCeEEEEccCCeEEEEECCCCCCCcCCcccCCCcCCCHHHHHHHHHHHHHHHhccC------CC-
Confidence 678999999999999996 33 22223333444311 125579999975311 00
Q ss_pred ccccCCccchhccHhhhhhcCCCCCCCCceEEEEEEEEEEe
Q 003281 474 DSLSVGRADIRKTVSQIKDEGLGTKEKPDWITVSATIVYIK 514 (834)
Q Consensus 474 ~~~~~~~~~~~ktI~ei~~~~lg~~~k~~~~~v~atI~~I~ 514 (834)
.....|+||++. .||.+.|.|.++-
T Consensus 143 --------~~~~~L~di~~~--------~f~DLv~qVv~v~ 167 (294)
T 1xjv_A 143 --------WTLLKLCDVQPM--------QYFDLTCQLLGKA 167 (294)
T ss_dssp ---------CCCCGGGCCSS--------CEEEEEEEEEEEE
T ss_pred --------CceeEHHHcccC--------CeeeEEEEEEEEE
Confidence 112356666542 3899999999774
No 46
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=98.13 E-value=0.00062 Score=77.60 Aligned_cols=338 Identities=11% Similarity=0.083 Sum_probs=188.7
Q ss_pred CCCceeccccCC-CCCceEEEEEEEEeccceeecCCCCCcceEEEEEeeCCCC-------EE-----EEEEechHHHhhh
Q 003281 216 PSRIIPIAALNP-YMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGG-------EI-----RVTCFNAVADQFY 282 (834)
Q Consensus 216 ~~~~~pI~~L~p-~~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De~g~-------~I-----~at~f~~~~d~f~ 282 (834)
+..+++|+++.- ......|.|-|+.....+. .+|...+.+|.|.|+.-. .| .+.+|....+.+=
T Consensus 35 ~y~y~~L~~a~~~~~~~VnviGVVvd~~~P~~---T~G~D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~~~e~LP 111 (495)
T 1jb7_A 35 KYEYVELAKASLTSAQPQHFYAVVIDATFPYK---TNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDLP 111 (495)
T ss_dssp -CCBCCTTTSCSSCCSCEEEEEEEEEECCCEE---CSSSCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSGGGSC
T ss_pred CCccEEHHHHHhccCCeEEEEEEEeecCCcee---cCCCeEEEEEEEEeCCCCcccccccccccCceEEEEECCChHHCC
Confidence 346889997742 3567889999988777653 235567889999996433 37 9999987655555
Q ss_pred hccCcCcEEEEeeeEEecCCccccc----CC-CeEEEEEccCccEE--Ee--cC-CCCCCcc----ccccc---------
Q 003281 283 HQVEAGKIYLVSRGSLKPAQKNFNH----LH-NDLEIFLDMTSMVQ--LC--YE-DDASIPR----QQFHF--------- 339 (834)
Q Consensus 283 ~~l~eG~vy~is~~~V~~a~~~~~~----~~-~~yeI~f~~~T~I~--~~--~d-~~~~iP~----~~~~f--------- 339 (834)
....+|||+.+.+++|+.-+....- .. ..| ..|....... +. +. .....|. ..|.|
T Consensus 112 ~V~~~GDII~LhrvkIq~~ng~~~~v~~~~~~Ssw-avF~~~~~~~~~~i~~~~~~~~~~P~~~S~~~~~~~~~d~~~v~ 190 (495)
T 1jb7_A 112 IIHRAGDIIRVHRATLRLYNGQRQFNANVFYSSSW-ALFSTDKRSVTQEINNQDAVSDTTPFSFSSKHATIEKNEISILQ 190 (495)
T ss_dssp CCCEETCEEEEEEEEEEEETTEEEEEEETTTTCEE-EEECSSSSCHHHHHHTCCCSCTTSCSEESSSCCCCCTTHHHHHH
T ss_pred CCCCCCCEEEEEEEEEEEECCcEEEEecCCCceEE-EEEeCCccccccccCCcccCcccCCccccCCCccCCHHHHHHHH
Confidence 4447999999999999866653221 11 122 3344332000 00 00 0001111 01111
Q ss_pred ------------------ccccccc-ccCCCceeeEEEEEEEecCCeeEEccCCceeeEEEEEEeccCCcEEEEEEcCCc
Q 003281 340 ------------------RPINDVE-GMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNF 400 (834)
Q Consensus 340 ------------------~~i~dI~-~~~~~~~vDVIGvV~~V~~~~~i~~k~g~~~~kr~i~L~D~s~~si~vtLWg~~ 400 (834)
.++..|. ++..+.++|+++.|+.+.... -.+-.|.|-|.|+.. .++++...
T Consensus 191 ~LR~W~~~~~~~~~~~~~~~f~~L~~di~~~~f~DLv~qVv~~~~~d---------~~~~~L~VwDgT~~~-~~~~~~~~ 260 (495)
T 1jb7_A 191 NLRKWANQYFSSYSVISSDMYTALNKAQAQKGDFDVVAKILQVHELD---------EYTNELKLKDASGQV-FYTLSLKL 260 (495)
T ss_dssp HHHHHHHHHHHHSCSSCGGGSCCGGGGGGCSSCEEEEEEEEEEEECS---------SSEEEEEEEETTCCE-EEEEEETT
T ss_pred HHHHHHHhcccccccccccchhhhhhhhccCCceeEEEEEeEEeccC---------CCeEEEEEEeCCCCC-cceeeccc
Confidence 1222333 444578999999999986542 135677778888742 22222211
Q ss_pred cchhhhhhhhcccCCCccEEEEEEEEEeecCC----eEEEeecceEEEEcCCchHHHHHHHHHHhcCCccceeeecccc-
Q 003281 401 CNDDGLRLQHMCDSGVFPILAVKAGRVSDFNG----KVVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDS- 475 (834)
Q Consensus 401 a~~~~~~l~~~~~~~~~~Vv~ik~~rV~~f~G----~~Ls~~~~S~i~inPd~pe~~~l~~w~~~~g~~~~~~sls~~~- 475 (834)
.+. ...++.|+.|...+..+-.+ ..++-. .-...+.+......++++++.... ..+-..+....
T Consensus 261 --~fP-------~~~~G~Vlri~~~~~de~~~~l~~~~~~~w-~ni~~~~~~sk~~ke~~~~~l~~~-~~~~~~~~~~~~ 329 (495)
T 1jb7_A 261 --KFP-------HVRTGEVVRIRSATYDETSTQKKVLILSHY-SNIITFIQSSKLAKELRAKIQDDH-SVEVASLKKNVS 329 (495)
T ss_dssp --TCT-------TCCTTCEEEEEEEEECTTCCSSCEEEEEEE-EEEEEECTTCHHHHHHHHHSCCCC-HHHHHHTTSSSC
T ss_pred --cCC-------ceeeEEEEEEecCccchhhhhhhhhccccc-cceeEEcccchhhhhhhhcccchh-hhhhhhcccccC
Confidence 011 11136788888877764332 122222 122245565555666676643222 00000000000
Q ss_pred ------ccCC---ccchhccHhhhhhcCCCCCCCC--ceEEEEEEEEEEecC---CeeeeCCCCCcCCCCcCcccccCCC
Q 003281 476 ------LSVG---RADIRKTVSQIKDEGLGTKEKP--DWITVSATIVYIKCD---NFCYTACPIMIGDRPCNKKVMNNGD 541 (834)
Q Consensus 476 ------~~~~---~~~~~ktI~ei~~~~lg~~~k~--~~~~v~atI~~I~~d---~~~Y~aC~~~~~~~~C~KKv~~~~d 541 (834)
+-.. ......||.||........+.+ .-|.+.+.|+.+-.- .|+-+-|+ .|.+. .. ..
T Consensus 330 ~~~~~lT~~~~~~~~~p~ttL~dIL~~~~~~~~v~~K~~fr~~VRVV~~~P~~i~df~~~~~~------~~~~~-~s-~~ 401 (495)
T 1jb7_A 330 LNAVVLTEVDKKHAALPSTSLQDLFHHADSDKELQAQDTFRTQFYVTKIEPSDVKEWVKGYDR------KTKKS-SS-LK 401 (495)
T ss_dssp SSCEECEEECGGGTTSCBCCHHHHHHTTTTCHHHHTCSEEEEEEEEEEEESSSGGGGEEEEET------TTTEE-EC-ST
T ss_pred CCCCcCCeecccCCCCCcEEHHHHhcCcccCccccccccEEEEEEEEEecCCCHHHhhhhhcc------ccccc-cc-cc
Confidence 0000 0112368889875321001111 227888888877543 57766687 57765 22 11
Q ss_pred CceecCCCCCccccceEEEEEEEEEEeCC-------CeEEEEEehHHHHHHhCCCHHHHHh
Q 003281 542 GRWHCDRCDQSVVECDYRYILQFQIQDHT-------GLTWVTAFQECAEEIMGMSAKDLYS 595 (834)
Q Consensus 542 g~~~CekC~~~~~~~~~ry~l~~~i~D~T-------g~~~~~~F~e~ae~llG~sA~el~~ 595 (834)
| +|.+. .+.|++.+.|.|.| +.+.+.++++.|.++|++.|.+|..
T Consensus 402 g-----~~~~~----~~~~~f~LlveD~t~~~~~~~~ri~l~v~g~~~a~Fl~l~a~nL~~ 453 (495)
T 1jb7_A 402 G-----ASGKG----DNIFQVQFLVKDASTQLNNNTYRVLLYTQDGLGANFFNVKADNLHK 453 (495)
T ss_dssp T-----CGGGC----EEEEEEEEEEECGGGTTBSEEEEEEEECTTSTTTTTTSSCCCCTTT
T ss_pred c-----ccCCC----CceEEEEEEEecCCCCCCCcccEEEEEEeCcchheecCCChHhhhc
Confidence 2 23332 46789999999999 9999999999888888899998754
No 47
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=98.07 E-value=6.6e-05 Score=85.21 Aligned_cols=176 Identities=13% Similarity=0.064 Sum_probs=120.8
Q ss_pred ccccccccccCCCceeeEEEEEEEecCCeeEEccCCceeeEEEEEEeccCCcEEEEEEcCCccchhhhhhhhcccCCCcc
Q 003281 339 FRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFP 418 (834)
Q Consensus 339 f~~i~dI~~~~~~~~vDVIGvV~~V~~~~~i~~k~g~~~~kr~i~L~D~s~~si~vtLWg~~a~~~~~~l~~~~~~~~~~ 418 (834)
|++|++|.... ...-|.|.|+..+++.++...++ +....++.|.|++| .|++|+|++.+..+...|+ .+.
T Consensus 3 ~~~I~~L~p~~--~~w~I~~rV~~k~~ir~~~~~~~-~g~~~~~~L~De~G-~I~at~~~~~~~~f~~~l~------eG~ 72 (444)
T 4gop_C 3 IYPIEGLSPYQ--NRWTIKARVTSKSDIRHWSNQRG-EGKLFSVNLLDDSG-EIKATGFNDAVDRFYPLLQ------ENH 72 (444)
T ss_dssp CCCSTTCCTTC--CSCEEEEECCEECCCEEEECSSC-EEEEEEEEEECSSC-EEEEEEETHHHHHHTTTCC------TTC
T ss_pred ceeHHHCCCCC--cceEEEEEEEEccCcceecCCCC-CceEEEEEEEcCCC-EEEEEEeHHHHHHHHHhee------cCC
Confidence 67788886532 35799999999999998876544 45567899999999 9999999999887655443 678
Q ss_pred EEEEEEEEEeecCCe--------EEEeecceEEEEcCCchHHHHHHHHHHhcCCccceeeeccccccCCccchhccHhhh
Q 003281 419 ILAVKAGRVSDFNGK--------VVGTISTTQLFIEPDFPEAHRLKEWFEKEGKNTQSVSISRDSLSVGRADIRKTVSQI 490 (834)
Q Consensus 419 Vv~ik~~rV~~f~G~--------~Ls~~~~S~i~inPd~pe~~~l~~w~~~~g~~~~~~sls~~~~~~~~~~~~ktI~ei 490 (834)
|+.|.+++|+..+++ .|.....|.|..-++.+ +.+. -......|++|
T Consensus 73 vy~Is~~~V~~~~~~y~~~~~~~ei~~~~~T~V~~~~d~~--------------~iP~-----------~~~~f~~i~~i 127 (444)
T 4gop_C 73 VYLISKARVNIAKKQFSNLQNEYEITFENSTEIEECTDAT--------------DVPE-----------VKYEFVRINEL 127 (444)
T ss_dssp EEEEESCEEEECCGGGCSCCCSEEEEECTTCEEEECSCCS--------------SSCC-----------CCCCBCCGGGG
T ss_pred EEEEcCCEEEecCCccccCCCCEEEEEcCCcEEEEccCcc--------------cCcc-----------eeecccCHHHH
Confidence 999999999764432 46666667776654421 0000 01224567888
Q ss_pred hhcCCCCCCCCceEEEEEEEEEEecCCeeeeCCCCCcCCCCcCcccccCCCCceecCCCCCccccceEEEEEEEEEEeCC
Q 003281 491 KDEGLGTKEKPDWITVSATIVYIKCDNFCYTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQSVVECDYRYILQFQIQDHT 570 (834)
Q Consensus 491 ~~~~lg~~~k~~~~~v~atI~~I~~d~~~Y~aC~~~~~~~~C~KKv~~~~dg~~~CekC~~~~~~~~~ry~l~~~i~D~T 570 (834)
.+. +....+.|.|.|..+..-. . +....+| ....+..+.|.|.|
T Consensus 128 ~~~-----~~~~~vDViG~V~~v~~~~-~----------------i~~k~~g--------------~~~~kr~i~L~D~s 171 (444)
T 4gop_C 128 ESV-----EANQQCDVIGILDSYGELS-E----------------IVSKASQ--------------RPVQKRELTLVDQG 171 (444)
T ss_dssp GGS-----CSSCCCBEEEEEEEECCCE-E----------------ECCTTTC--------------SCEEEEEEEEECTT
T ss_pred hcc-----CCCCceEEEEEEEEcCCcE-E----------------EEEccCC--------------ceeeEEEEEEEeCC
Confidence 752 2234677889999886421 0 1000111 12356699999999
Q ss_pred C-eEEEEEehHHHHHH
Q 003281 571 G-LTWVTAFQECAEEI 585 (834)
Q Consensus 571 g-~~~~~~F~e~ae~l 585 (834)
| ++.+++|++.|+.+
T Consensus 172 g~~i~~tLWg~~A~~f 187 (444)
T 4gop_C 172 NRSVKLTLWGKTAETF 187 (444)
T ss_dssp CBEEEEEEEHHHHHTS
T ss_pred CCEEEEEEEhhhhhhh
Confidence 9 79999999999764
No 48
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=98.05 E-value=1.7e-06 Score=57.41 Aligned_cols=21 Identities=43% Similarity=0.923 Sum_probs=17.8
Q ss_pred CcCcccCCCCccCCCCCCCCC
Q 003281 786 SECYKCHKTGHWARDCPSLNA 806 (834)
Q Consensus 786 ~~Cy~Cg~~GH~ardCp~~~~ 806 (834)
..||+||++||||||||+...
T Consensus 3 ~~Cf~CG~~GH~ardC~~~~~ 23 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEEXX 23 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC--
T ss_pred CeeEeCCCCCcccccCCCccc
Confidence 479999999999999998753
No 49
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.96 E-value=4.1e-05 Score=70.11 Aligned_cols=101 Identities=17% Similarity=0.163 Sum_probs=78.5
Q ss_pred cccccccccccCCCceeeEEEEEEEecCCeeEEccCCceeeEEEEEEeccCCcEEEEEEcCCccchhhhhhhhcccCCCc
Q 003281 338 HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVF 417 (834)
Q Consensus 338 ~f~~i~dI~~~~~~~~vDVIGvV~~V~~~~~i~~k~g~~~~kr~i~L~D~s~~si~vtLWg~~a~~~~~~l~~~~~~~~~ 417 (834)
++++|++|.... .-.-|.|.|+.++++.++..++| +....++.|.|++| +|++|+|++.|..+...|+ .+
T Consensus 3 ~~~~Is~L~p~~--~~w~I~~rV~~k~~~r~~~~~~~-~g~~~~~~L~De~G-~I~at~~~~~~~~f~~~l~------eG 72 (114)
T 1ynx_A 3 PIFAIEQLSPYQ--NVWTIKARVSYKGEIKTWHNQRG-DGKLFNVNFLDTSG-EIRATAFNDFATKFNEILQ------EG 72 (114)
T ss_dssp CBCCGGGCCTTT--CCCEEEEEEEEEEEEEEEECSSC-EEEEEEEEEEETTE-EEEEEECHHHHHHHHHHSC------SS
T ss_pred ceEEHHHCCCCC--CceEEEEEEEEeccceEEecCCC-CceEEEEEEECCCC-eEEEEECHHHHHHHHhhcc------cC
Confidence 467888886532 24889999999999999977655 56778999999999 9999999999988766554 67
Q ss_pred cEEEEEEEEEee----cC---C-eEEEeecceEEEEcCC
Q 003281 418 PILAVKAGRVSD----FN---G-KVVGTISTTQLFIEPD 448 (834)
Q Consensus 418 ~Vv~ik~~rV~~----f~---G-~~Ls~~~~S~i~inPd 448 (834)
.|+.|.+++|+. |+ . ..|.....|.|..-+|
T Consensus 73 ~vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d 111 (114)
T 1ynx_A 73 KVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECFD 111 (114)
T ss_dssp SEEEEESCEEEECCTTTSSSSSCEEEEECSSCEEEESCC
T ss_pred cEEEECCcEEEECCCCcccCCCCEEEEECCCCEEEECCC
Confidence 899999999975 33 1 2566667777766554
No 50
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.93 E-value=6.6e-06 Score=64.52 Aligned_cols=21 Identities=33% Similarity=1.108 Sum_probs=18.2
Q ss_pred CCcCcccCCCCccCCCCCCCC
Q 003281 785 SSECYKCHKTGHWARDCPSLN 805 (834)
Q Consensus 785 ~~~Cy~Cg~~GH~ardCp~~~ 805 (834)
...||+||++|||++|||...
T Consensus 7 ~~~C~kCGk~GH~~k~Cp~~~ 27 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCPTNG 27 (55)
T ss_dssp SCCCTTTCCTTSCGGGCSGGG
T ss_pred CCccccCCCcCcccccCCCCC
Confidence 357999999999999999543
No 51
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=97.81 E-value=0.00014 Score=71.48 Aligned_cols=89 Identities=20% Similarity=0.323 Sum_probs=70.5
Q ss_pred ccccccccccc-cCCCceeeEEEEEEEecCCeeEEccCCceeeEEEEEEeccC----CcEEEEEEcCCccchhhhhhhhc
Q 003281 337 FHFRPINDVEG-MENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMS----GRSVELTLWGNFCNDDGLRLQHM 411 (834)
Q Consensus 337 ~~f~~i~dI~~-~~~~~~vDVIGvV~~V~~~~~i~~k~g~~~~kr~i~L~D~s----~~si~vtLWg~~a~~~~~~l~~~ 411 (834)
+.|+++.++.+ +..+..|+|||||+++.+... +..|+.-....|+|+|.| +..|.|.++.+..+.+...
T Consensus 27 ~~~~~~r~~l~~~~~g~~VNviGVVvd~~~P~~--S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~LP~V---- 100 (187)
T 1qzg_A 27 LTFQSIRSSQELQKKNTIVNLFGIVKDFTPSRQ--SLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVI---- 100 (187)
T ss_dssp EEEECHHHHTSCCSSCEEEEEEEEEEEEEEEEE--CSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCC----
T ss_pred eeEEEHHHHHhhccCCCEEEEEEEEEEccCcee--cCCCCccEEEEEEEEeCCCCCCCCceEEEEECCChhhCCCC----
Confidence 56888888765 567899999999999998853 213554578999999998 5679999999877665421
Q ss_pred ccCCCccEEEEEEEEEeecCCe
Q 003281 412 CDSGVFPILAVKAGRVSDFNGK 433 (834)
Q Consensus 412 ~~~~~~~Vv~ik~~rV~~f~G~ 433 (834)
...++||.+..++|+.|+|.
T Consensus 101 --~~~GDIIlL~rvkiq~~~g~ 120 (187)
T 1qzg_A 101 --KQVGQPLLLHQITLRSYRDR 120 (187)
T ss_dssp --CSTTCEEEEEEEEEEEETTE
T ss_pred --CCCCCEEEEEEEEEEEECCe
Confidence 14689999999999999996
No 52
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=97.75 E-value=1.9e-05 Score=57.74 Aligned_cols=22 Identities=41% Similarity=1.132 Sum_probs=19.4
Q ss_pred CCcCcccCCCCccCCCCCCCCC
Q 003281 785 SSECYKCHKTGHWARDCPSLNA 806 (834)
Q Consensus 785 ~~~Cy~Cg~~GH~ardCp~~~~ 806 (834)
...||+|++.||||+|||....
T Consensus 10 ~~~C~~Cgk~GH~ardCP~~~~ 31 (40)
T 1a6b_B 10 RDQCAYCKEKGHWAKDCPKKPR 31 (40)
T ss_dssp SSSCSSSCCTTCCTTSCSSSCC
T ss_pred CCeeeECCCCCcchhhCcCCcc
Confidence 3579999999999999999754
No 53
>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila}
Probab=97.54 E-value=0.01 Score=54.23 Aligned_cols=159 Identities=19% Similarity=0.327 Sum_probs=111.6
Q ss_pred ceeccccCCCCCc--eEEEEEEEEeccceeecCCCCCcceEEEEEeeCCCCEEEEEEechHHHhhhhccCcCcEEEEeee
Q 003281 219 IIPIAALNPYMGK--WTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG 296 (834)
Q Consensus 219 ~~pI~~L~p~~~~--w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De~g~~I~at~f~~~~d~f~~~l~eG~vy~is~~ 296 (834)
..-|+.|....++ +...+||+.|+. +|.|.. +.+.|-+.-.|+..-+|...+|.. +|.-|..|++|.-|++-.+
T Consensus 11 tllisqlqvgknrfsfkfegrvvykss--tfqnqq-dskyffitaqdannqeinlsfwqk-vdqsyqtlkvgqyyyfigg 86 (213)
T 3u58_A 11 TLLISQLQVGKNRFSFKFEGRVVYKSS--TFQNQQ-DSKYFFITAQDANNQEINLSFWQK-VDQSYQTLKVGQYYYFIGG 86 (213)
T ss_dssp EECGGGCCTTSCTTSEEEEEEEEEECC--CBCCST-TCCBEEEEEECTTSCEEEEEECSS-HHHHHHHCCTTCEEEEESC
T ss_pred hhhhhhhhhccceeeEEeeeEEEEeec--cccccc-cccEEEEEeecCCCceechHHHHH-hhhhhheeeeceEEEEEcc
Confidence 4568889888775 567899999986 677754 478899999999999999999986 6888899999999999999
Q ss_pred EEecCCcccccCCCeEEEEEccC-ccEEEecCCCCCCccccccccccccccccCCCceeeEEEEEEEecCCeeEEccCCc
Q 003281 297 SLKPAQKNFNHLHNDLEIFLDMT-SMVQLCYEDDASIPRQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGT 375 (834)
Q Consensus 297 ~V~~a~~~~~~~~~~yeI~f~~~-T~I~~~~d~~~~iP~~~~~f~~i~dI~~~~~~~~vDVIGvV~~V~~~~~i~~k~g~ 375 (834)
.|+.- .+..|+.|.-. -.|.+-+. +--..=.-.-|+++... ...+..|+..|+++.... +
T Consensus 87 evkqf-------knnlelkfkfgdyqiipket----lggsggstllisevlkt-skqylsvlaqvvdiqssd-------k 147 (213)
T 3u58_A 87 EVKQF-------KNNLELKFKFGDYQIIPKET----LGGSGGSTLLISEVLKT-SKQYLSVLAQVVDIQSSD-------K 147 (213)
T ss_dssp EEEEC-------SSSEEEEECSSCCEEEESTT----TTCSTTCCBCHHHHTTC-CCSEEEEEEEEEEEEECS-------S
T ss_pred cHhhh-------ccceEEEEecCceEEechhh----cCCCCCceeehHHHHHH-hHHHHHHHHHhhccccCC-------C
Confidence 98743 35677777643 34444211 00000112234444432 246788888888875432 1
Q ss_pred eeeEEEEEEeccCC-cEEEEEEcCCccch
Q 003281 376 ETQKRTLHLRDMSG-RSVELTLWGNFCND 403 (834)
Q Consensus 376 ~~~kr~i~L~D~s~-~si~vtLWg~~a~~ 403 (834)
..-+.|.|.|. ..+.+.++-+.+-+
T Consensus 148 ---nirlkicdnscnqelkvvifpdlcye 173 (213)
T 3u58_A 148 ---NIRLKICDNSCNQELKVVIFPDLCYE 173 (213)
T ss_dssp ---CEEEEEECTTCSCCEEEEECTTTTGG
T ss_pred ---ceEEEeecccccceeEEEEchhHhhH
Confidence 23467889985 78999999988754
No 54
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=97.54 E-value=2.8e-05 Score=51.47 Aligned_cols=20 Identities=35% Similarity=0.762 Sum_probs=17.3
Q ss_pred cccccCccCccCCCCCCCCC
Q 003281 743 SCSSCGAVGHSSMNCPSIMS 762 (834)
Q Consensus 743 ~C~~Cg~~GH~a~~Cp~~~~ 762 (834)
.||+||+.||+|++||.+..
T Consensus 4 ~Cf~CG~~GH~ardC~~~~~ 23 (26)
T 1dsq_A 4 VCFSCGKTGHIKRDCKEEXX 23 (26)
T ss_dssp BCTTTCCBSSCTTTTTCC--
T ss_pred eeEeCCCCCcccccCCCccc
Confidence 79999999999999998754
No 55
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=97.52 E-value=3.1e-05 Score=52.67 Aligned_cols=20 Identities=40% Similarity=0.919 Sum_probs=18.2
Q ss_pred CcCcccCCCCccCCCCCCCC
Q 003281 786 SECYKCHKTGHWARDCPSLN 805 (834)
Q Consensus 786 ~~Cy~Cg~~GH~ardCp~~~ 805 (834)
..||+|+++||+|+||+.+.
T Consensus 7 ~~C~nCgk~GH~ar~C~~pr 26 (29)
T 1nc8_A 7 IRCWNCGKEGHSARQCRAPR 26 (29)
T ss_dssp CBCTTTSCBSSCGGGCCSSS
T ss_pred CEEEECCccccCHhHCcccc
Confidence 57999999999999999874
No 56
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=97.51 E-value=4.8e-05 Score=59.88 Aligned_cols=22 Identities=41% Similarity=1.132 Sum_probs=19.3
Q ss_pred CCcCcccCCCCccCCCCCCCCC
Q 003281 785 SSECYKCHKTGHWARDCPSLNA 806 (834)
Q Consensus 785 ~~~Cy~Cg~~GH~ardCp~~~~ 806 (834)
...||+||+.||||+|||....
T Consensus 23 ~~~C~~Cge~GH~ardCp~~~~ 44 (56)
T 1u6p_A 23 RDQCAYCKEKGHWAKDCPKKPR 44 (56)
T ss_dssp TTBCSSSCCBSSCGGGCTTCCC
T ss_pred CCcceeCCCCCcccccCcCCcc
Confidence 3579999999999999999754
No 57
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=97.40 E-value=0.00014 Score=53.18 Aligned_cols=21 Identities=29% Similarity=0.733 Sum_probs=19.3
Q ss_pred ccccccCccCccCCCCCCCCC
Q 003281 742 QSCSSCGAVGHSSMNCPSIMS 762 (834)
Q Consensus 742 ~~C~~Cg~~GH~a~~Cp~~~~ 762 (834)
..||+||+.||||++||....
T Consensus 11 ~~C~~Cgk~GH~ardCP~~~~ 31 (40)
T 1a6b_B 11 DQCAYCKEKGHWAKDCPKKPR 31 (40)
T ss_dssp SSCSSSCCTTCCTTSCSSSCC
T ss_pred CeeeECCCCCcchhhCcCCcc
Confidence 499999999999999999775
No 58
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=97.37 E-value=0.002 Score=75.31 Aligned_cols=160 Identities=11% Similarity=0.076 Sum_probs=112.3
Q ss_pred CEEEEEEechHHHhhhhccCcCcEEEEeeeEEecCCcccccCCCeEEEEEccCccEEEecCCCCCCccccc---cccccc
Q 003281 267 GEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQF---HFRPIN 343 (834)
Q Consensus 267 ~~I~at~f~~~~d~f~~~l~eG~vy~is~~~V~~a~~~~~~~~~~yeI~f~~~T~I~~~~d~~~~iP~~~~---~f~~i~ 343 (834)
...-.++|+..-+ ..+.|+||++|.|.+...... +.+.-.-..+|+-...|.+.++...+..+.+ .| ..+.|+
T Consensus 525 k~~iLSIW~P~ed-l~s~L~EG~~y~iy~L~~s~s--~~~~~~~~lqLtAtk~T~~~~L~~~~~~~~~-~~~pR~~~~~~ 600 (738)
T 1miu_A 525 KSALLSIWRPSSD-LSSLLTEGKRYRIYHLAVSKS--KSKFERPSIQLTATKRTQYQQLPVSSETLLQ-VYQPRESLHFS 600 (738)
T ss_dssp CCEEEEEESCCHH-HHHHCCSSCEEEEEEECCCCC--CCSSSCCSCEEEEEEEEEEEEECCCHHHHTT-TCCCCCBCCSG
T ss_pred ceEEEEEeCCChH-HHhhccCCcEEEEEEeeccCC--CccCccceEEEeecccceeEECCcchhhhcc-ccCCcceeeHH
Confidence 3677889986644 677899999999998654433 3222234678888888999988532211111 12 234566
Q ss_pred cccc---cCCCceeeEEEEEEEecCCeeEEccCCceeeEEEEEEeccCCcEEEEEEcCCccchhhhhhhhcccCCCccEE
Q 003281 344 DVEG---MENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPIL 420 (834)
Q Consensus 344 dI~~---~~~~~~vDVIGvV~~V~~~~~i~~k~g~~~~kr~i~L~D~s~~si~vtLWg~~a~~~~~~l~~~~~~~~~~Vv 420 (834)
+|.+ .....-||++|+|+.|+... + ..-.+.|.|.+..-+-|.+|....++ -.++.+|
T Consensus 601 ~l~~~~f~p~~~EvDivG~Vv~v~~~~------~---~~~~vylsD~~~nll~Ikf~~~l~eD----------~~~~~~v 661 (738)
T 1miu_A 601 RLSDPAFQPPCSEVDVVGVVVSVVKPI------G---LAPLVYLSDECLNLLVVKFGIDLNED----------IKPRVLI 661 (738)
T ss_dssp GGGSSSCCTTTTEEEEEEEEEEEECCT------T---SCCEEEEECSSSCEEEEEESSCCCSC----------CCSSCEE
T ss_pred HhcCccccCCCCceeEEEEEEEEcccC------c---ccceEEEEcCCCcEEEEEEecCchhh----------CccccEE
Confidence 6665 55678999999999996642 2 23377889999889999999998743 2368899
Q ss_pred EEEEEEEeecC--Ce-EEEeecceEEEEcCCc
Q 003281 421 AVKAGRVSDFN--GK-VVGTISTTQLFIEPDF 449 (834)
Q Consensus 421 ~ik~~rV~~f~--G~-~Ls~~~~S~i~inPd~ 449 (834)
++.+...+... +. .|-.+..|.+.-||.-
T Consensus 662 a~sNL~~r~~~~~~ip~~~a~~~t~fs~~pk~ 693 (738)
T 1miu_A 662 AASNLQCQPESTSGVPTLFAGHFSIFSASPKE 693 (738)
T ss_dssp EEEEEECCSCCSSSCCCEEECTTCEEESSCCC
T ss_pred EEeeeEeeccccccCceEEeccceEEecCccH
Confidence 99998887543 32 5666778889888854
No 59
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=97.25 E-value=0.0033 Score=71.66 Aligned_cols=89 Identities=13% Similarity=0.116 Sum_probs=67.2
Q ss_pred cccccccccccccccCCCceeeEEEEEEEecCCeeEEccCCceeeEEEEEEeccCCc-------EE-----EEEEcCCcc
Q 003281 334 RQQFHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGR-------SV-----ELTLWGNFC 401 (834)
Q Consensus 334 ~~~~~f~~i~dI~~~~~~~~vDVIGvV~~V~~~~~i~~k~g~~~~kr~i~L~D~s~~-------si-----~vtLWg~~a 401 (834)
...|.|++|+++... .+..|||||||+++.+... + .|+ -....|+|+|.|-. .+ .|.++.+..
T Consensus 33 ~~~y~y~~L~~a~~~-~~~~VnviGVVvd~~~P~~--T-~G~-D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~~~ 107 (495)
T 1jb7_A 33 GHKYEYVELAKASLT-SAQPQHFYAVVIDATFPYK--T-NQE-RYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRF 107 (495)
T ss_dssp ---CCBCCTTTSCSS-CCSCEEEEEEEEEECCCEE--C-SSS-CEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSG
T ss_pred cCCCccEEHHHHHhc-cCCeEEEEEEEeecCCcee--c-CCC-eEEEEEEEEeCCCCcccccccccccCceEEEEECCCh
Confidence 456899999998753 4778999999999998862 2 244 45889999998865 37 999998866
Q ss_pred chhhhhhhhcccCCCccEEEEEEEEEeecCCe
Q 003281 402 NDDGLRLQHMCDSGVFPILAVKAGRVSDFNGK 433 (834)
Q Consensus 402 ~~~~~~l~~~~~~~~~~Vv~ik~~rV~~f~G~ 433 (834)
+.+... ...++||.|+.++|..|+|.
T Consensus 108 e~LP~V------~~~GDII~LhrvkIq~~ng~ 133 (495)
T 1jb7_A 108 EDLPII------HRAGDIIRVHRATLRLYNGQ 133 (495)
T ss_dssp GGSCCC------CEETCEEEEEEEEEEEETTE
T ss_pred HHCCCC------CCCCCEEEEEEEEEEEECCc
Confidence 554321 13589999999999999997
No 60
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=97.21 E-value=0.00022 Score=56.08 Aligned_cols=23 Identities=30% Similarity=0.733 Sum_probs=20.0
Q ss_pred ccccccccCccCccCCCCCCCCC
Q 003281 740 ARQSCSSCGAVGHSSMNCPSIMS 762 (834)
Q Consensus 740 ~~~~C~~Cg~~GH~a~~Cp~~~~ 762 (834)
....||+||+.|||+++||....
T Consensus 22 ~~~~C~~Cge~GH~ardCp~~~~ 44 (56)
T 1u6p_A 22 DRDQCAYCKEKGHWAKDCPKKPR 44 (56)
T ss_dssp CTTBCSSSCCBSSCGGGCTTCCC
T ss_pred CCCcceeCCCCCcccccCcCCcc
Confidence 33589999999999999999765
No 61
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=97.18 E-value=9.9e-05 Score=50.16 Aligned_cols=20 Identities=35% Similarity=0.780 Sum_probs=18.3
Q ss_pred cccccCccCccCCCCCCCCC
Q 003281 743 SCSSCGAVGHSSMNCPSIMS 762 (834)
Q Consensus 743 ~C~~Cg~~GH~a~~Cp~~~~ 762 (834)
.||+||++||++++||.+..
T Consensus 8 ~C~nCgk~GH~ar~C~~prk 27 (29)
T 1nc8_A 8 RCWNCGKEGHSARQCRAPRR 27 (29)
T ss_dssp BCTTTSCBSSCGGGCCSSSS
T ss_pred EEEECCccccCHhHCccccc
Confidence 79999999999999998764
No 62
>3u4v_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 1.80A {Tetrahymena thermophila}
Probab=97.03 E-value=0.0081 Score=50.12 Aligned_cols=88 Identities=26% Similarity=0.469 Sum_probs=71.7
Q ss_pred ceeccccCCCCCc--eEEEEEEEEeccceeecCCCCCcceEEEEEeeCCCCEEEEEEechHHHhhhhccCcCcEEEEeee
Q 003281 219 IIPIAALNPYMGK--WTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRG 296 (834)
Q Consensus 219 ~~pI~~L~p~~~~--w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De~g~~I~at~f~~~~d~f~~~l~eG~vy~is~~ 296 (834)
..-|+.|....++ +...+||+.|+. +|.|.. +.+.|-+.-.|+..-+|...+|.. +|.-|..|++|..|++..+
T Consensus 15 tllisqlqvgknrfsfkfegrvvykss--tfqnqq-dskyffitaqdannqeinmsfwqk-vdqsyqtlkvgqyyyfigg 90 (117)
T 3u4v_A 15 TLLISQLQVGKNRFSFKFEGRVVYKSS--TFQNQQ-DSKYFFITAQDANNQEINMSFWQK-VDQSYQTLKVGQYYYFIGG 90 (117)
T ss_dssp EECGGGCCTTCCTTSCEEEEEEEEECC--CEECTT-SCEEEEEEEECTTSCEEEEEEESS-THHHHTTCCTTCEEEEESC
T ss_pred heehhhhhcccceeeEEeeeEEEEeec--cccccc-cccEEEEEeecCCCceechHHHHH-hhhhhheEeeceEEEEEcc
Confidence 4578899888775 567899999986 577754 478899999999999999999986 6888899999999999999
Q ss_pred EEecCCcccccCCCeEEEEEc
Q 003281 297 SLKPAQKNFNHLHNDLEIFLD 317 (834)
Q Consensus 297 ~V~~a~~~~~~~~~~yeI~f~ 317 (834)
.|+.- .+..|+.|.
T Consensus 91 evkqf-------knnlelkfk 104 (117)
T 3u4v_A 91 EVKQF-------KNNLELKFK 104 (117)
T ss_dssp EEEEE-------TTEEEEEEE
T ss_pred chhhh-------ccceEEEEe
Confidence 98743 356677765
No 63
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.65 E-value=0.00057 Score=53.57 Aligned_cols=20 Identities=40% Similarity=0.830 Sum_probs=17.8
Q ss_pred ccccccCccCccCCCCCCCC
Q 003281 742 QSCSSCGAVGHSSMNCPSIM 761 (834)
Q Consensus 742 ~~C~~Cg~~GH~a~~Cp~~~ 761 (834)
+.||+||++|||+++||...
T Consensus 8 ~~C~kCGk~GH~~k~Cp~~~ 27 (55)
T 2ysa_A 8 YTCFRCGKPGHYIKNCPTNG 27 (55)
T ss_dssp CCCTTTCCTTSCGGGCSGGG
T ss_pred CccccCCCcCcccccCCCCC
Confidence 48999999999999999644
No 64
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=95.01 E-value=0.95 Score=48.11 Aligned_cols=65 Identities=23% Similarity=0.258 Sum_probs=49.6
Q ss_pred CCceEEEEEEEEeccceeecCCCCCcceEEEEEe------eCCC------CEEEEEEechHHHhhhhc-cCcCcEEEEee
Q 003281 229 MGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL------DSDG------GEIRVTCFNAVADQFYHQ-VEAGKIYLVSR 295 (834)
Q Consensus 229 ~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~------De~g------~~I~at~f~~~~d~f~~~-l~eG~vy~is~ 295 (834)
+++.+|.+||++.-++|...+ | ..+.+|.|. |++| .-|++++|+.+++.+... |+.|+.++|..
T Consensus 5 mN~V~LiGrL~~dPelr~t~~--G-~~v~~f~LAv~r~~~~~~G~~~~~t~~i~vv~~g~~Ae~~~~~~l~KG~~V~VeG 81 (301)
T 1se8_A 5 MNHVYLIGALARDPELRYTGN--G-MAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVEG 81 (301)
T ss_dssp EEEEEEEEEESSCCEEEECTT--S-CEEEEEEEEEEEEC-------CEEEEEEEEEEESHHHHHHHHTCCCTTCEEEEEE
T ss_pred eeEEEEEEEECCCceEEECCC--C-CEEEEEEEEEcCceECCCCCEecceEEEEEEEEcHHHHHHHhhCCCCCCEEEEEE
Confidence 478999999999888887653 2 256677663 2323 248999999999999998 99999999986
Q ss_pred e
Q 003281 296 G 296 (834)
Q Consensus 296 ~ 296 (834)
.
T Consensus 82 ~ 82 (301)
T 1se8_A 82 T 82 (301)
T ss_dssp E
T ss_pred E
Confidence 4
No 65
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=93.63 E-value=2.3 Score=44.14 Aligned_cols=176 Identities=14% Similarity=0.194 Sum_probs=96.4
Q ss_pred CCceEEEEEEEEeccceeecCCCCCcceEEEEEe------eCCC------CEEEEEEechHHHhhhhccCcCcEEEEeee
Q 003281 229 MGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL------DSDG------GEIRVTCFNAVADQFYHQVEAGKIYLVSRG 296 (834)
Q Consensus 229 ~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~------De~g------~~I~at~f~~~~d~f~~~l~eG~vy~is~~ 296 (834)
+++.+|.+||++--++|...+ | ..+.+|.|. |++| .-|.+++|+.+++.....|+.|+.++|...
T Consensus 5 ~N~v~L~G~l~~dpelr~t~~--G-~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~~g~~Ae~~~~~l~KG~~V~V~G~ 81 (264)
T 2fxq_A 5 LNQVFLIGTLTARPDMRYTPG--G-LAILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQAEMWGDLLEKGQLIFVEGR 81 (264)
T ss_dssp EEEEEEEEEESSCCCCEECTT--C-CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTTCCTTCEEEEEEE
T ss_pred eeEEEEEEEeccCCeEEECCC--C-CEEEEEEEEECCcEECCCCCEecccEEEEEEEEchHHHHHHHhCCCCCEEEEEEE
Confidence 578999999999888987653 2 256666663 4443 248999999999999999999999999864
Q ss_pred EEecCCccccc---CCCeEEEEEccCccEEEecCCCC-CCcccccccccccccc--ccC-CCceeeEEEEEEEecCCeeE
Q 003281 297 SLKPAQKNFNH---LHNDLEIFLDMTSMVQLCYEDDA-SIPRQQFHFRPINDVE--GME-NNSVVDLIGVVSYISPTASL 369 (834)
Q Consensus 297 ~V~~a~~~~~~---~~~~yeI~f~~~T~I~~~~d~~~-~iP~~~~~f~~i~dI~--~~~-~~~~vDVIGvV~~V~~~~~i 369 (834)
|+.. .|.. ....++|..+ .|+.+..... ... +... .+. .-..|-++|.|..--++.
T Consensus 82 -L~~~--~~~~dG~~r~~~ev~a~---~i~~l~~~~~~~~~---------d~~g~~~m~~~~N~v~l~G~l~~dpe~r-- 144 (264)
T 2fxq_A 82 -LEYR--QWEKDGEKKSEVQVRAE---FIDPLEGRGRETLE---------DARGQPRLRRALNQVILMGNLTRDPDLR-- 144 (264)
T ss_dssp -EEEC-----------CCEEEEEE---EEEECCCC-----------------------CCCCEEEEEEEEESSCCCCE--
T ss_pred -EEee--eEEeCCEEEEEEEEEEE---EEEECcCCcccccc---------ccccccccccceEEEEEEEEECCCCEEE--
Confidence 3221 1211 1112344433 2333311000 000 0000 010 123566788876533332
Q ss_pred EccCCceeeEEEEEEecc-------CCcEEEEEEcCCccchhhhhhhhcccCCCccEEEEEE-EEEeecC
Q 003281 370 MRKNGTETQKRTLHLRDM-------SGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKA-GRVSDFN 431 (834)
Q Consensus 370 ~~k~g~~~~kr~i~L~D~-------s~~si~vtLWg~~a~~~~~~l~~~~~~~~~~Vv~ik~-~rV~~f~ 431 (834)
.+.+|+.+.+-.|-.-.. .-.-+.|++||+.|+... .|. .+..|.+.+ .+...|.
T Consensus 145 ~t~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae~~~-~l~------KG~~V~V~G~l~~~~~~ 207 (264)
T 2fxq_A 145 YTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWAS-ELR------KGDGLLVIGRLVNDSWT 207 (264)
T ss_dssp ECTTCCEEEEEEEEEECCC-------EEEEEEEEEHHHHHHHT-TCC------TTCEEEEEEEEEEEEEE
T ss_pred ECCCCCEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHHHhh-hcC------CCCEEEEEEEEEeeEEE
Confidence 234666543333322211 112699999999987654 432 345555544 5666664
No 66
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A
Probab=93.57 E-value=0.096 Score=49.72 Aligned_cols=88 Identities=15% Similarity=0.164 Sum_probs=61.0
Q ss_pred EEEEEEEEeCCCeEEEEEehHHHHHHhCCCHHHHHhhhccCCChhH---HHHHHH----HhcCceEEEEEEEeecccCcc
Q 003281 560 YILQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEK---FGEVVR----NATFTKYLFKLKVKEETFSDE 632 (834)
Q Consensus 560 y~l~~~i~D~Tg~~~~~~F~e~ae~llG~sA~el~~l~~ee~d~~~---~~~~l~----~~~~k~~~f~l~~k~~~ynde 632 (834)
|.|.+.|.|+|+.+.+.+=++.-+.++|.++.|+..++ .|+.. +.+.|+ .+.--.-+++|.....
T Consensus 60 W~l~a~IsDGS~~LdV~f~~~VLt~lIGfS~~E~~~lk---kdp~~~~~l~e~L~~~Q~~L~dl~clM~I~~~~~----- 131 (157)
T 3mxn_A 60 WSITAKVSDGTAYLDVDFVDEILTSLIGFSVPEMKQSK---KDPLQYQKFLEGLQKCQRDLIDLCCLMTISFNPS----- 131 (157)
T ss_dssp CBCEEEEECSSCEEEEEECHHHHHHHHSCCHHHHHHHT---TSHHHHHHHHHHHHHHHHHHHHCEEEEEEEEETT-----
T ss_pred EEEEEEEeCCceeEEEEeeHHHHHhhhCCCHHHHHHHh---hCHHHHHHHHHHHHHHHHHHHhhccEEEEEEcCC-----
Confidence 66799999999999999999999999999999999998 35433 333333 3344455666655321
Q ss_pred ceEEEEEEEeeecChHHHHHHHHHH
Q 003281 633 QRVKSTVVKAERYNYSSETRFILDL 657 (834)
Q Consensus 633 ~rvk~~v~~~~~vd~~~e~~~Ll~~ 657 (834)
.-+-.|..+++++- +....|-+.
T Consensus 132 -~~~pVV~~l~d~s~-~~l~~L~kR 154 (157)
T 3mxn_A 132 -LSKAMVLALQDVNM-EHLENLKKR 154 (157)
T ss_dssp -TTEEEEEEEECCCH-HHHHHHHHH
T ss_pred -CCCCEEEEecCCCH-HHHHHHHHH
Confidence 12677788887765 334444443
No 67
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=93.52 E-value=0.5 Score=44.45 Aligned_cols=109 Identities=11% Similarity=-0.040 Sum_probs=61.7
Q ss_pred cccccccCCCceeeEEEEEEEecCC-eeEEcc--CCce---eeEEEEEE-ecc-------CCcEEEEEEcCCccchhhhh
Q 003281 342 INDVEGMENNSVVDLIGVVSYISPT-ASLMRK--NGTE---TQKRTLHL-RDM-------SGRSVELTLWGNFCNDDGLR 407 (834)
Q Consensus 342 i~dI~~~~~~~~vDVIGvV~~V~~~-~~i~~k--~g~~---~~kr~i~L-~D~-------s~~si~vtLWg~~a~~~~~~ 407 (834)
|+-|.++..+.++|+++.|+.+-.- ..++-. |.++ +.. ... .|. ...++.||||+++|.-.-+.
T Consensus 5 f~llkdv~~~~F~Dl~~qVv~~~~~~~~~~LyVTDYT~N~~~~~--~~~~~~~~~W~Gp~G~~tlqVtlwd~ha~~ar~~ 82 (143)
T 4hik_A 5 FSLLSQITPHQRCSFYAQVIKTWYSDKNFTLYVTDYTENELFFP--MSPYTSSSRWRGPFGRFSIRCILWDEHDFYCRNY 82 (143)
T ss_dssp CCCGGGCCSSCEEEEEEEEEEEEECSSCEEEEEECSCCCTTSCC--BCTTCTTCSCCCCCBSCCEEEEECHHHHHHHTTT
T ss_pred hhhHHhCCCCCeEEEEEEEEEEEcCCCeEEEEEecCCCCCcccc--cccCCCCccccCCCCcEEEEEEEECcHHHHHHhh
Confidence 3445555578999999999886532 122111 2111 110 000 011 22589999999998643222
Q ss_pred hhhcccCCCccEEEEEEEEEeec-CCe-EEEeecc-------eEEEEcCCchHHHHHHHH
Q 003281 408 LQHMCDSGVFPILAVKAGRVSDF-NGK-VVGTIST-------TQLFIEPDFPEAHRLKEW 458 (834)
Q Consensus 408 l~~~~~~~~~~Vv~ik~~rV~~f-~G~-~Ls~~~~-------S~i~inPd~pe~~~l~~w 458 (834)
-..+..|.|++++++.- +|. .-.+.+. -...++++.|..++|.+.
T Consensus 83 ------lk~Gd~v~L~Nv~iK~~~~g~LEG~l~~dr~~~~ki~v~~ld~~~~~lk~ll~R 136 (143)
T 4hik_A 83 ------IKEGDYVVMKNVRTKIDHLGYLECILHGDSAKRYNMSIEKVDSEEPELNEIKSR 136 (143)
T ss_dssp ------CCTTCEEEEEEEEEEECTTSCEEEEECCCTTCCSCCEEEEECTTCGGGHHHHHH
T ss_pred ------CCCCCEEEEEeEEEeecCCceEEEEEcCCCCCCCcceEEEcCCCCHHHHHHHHH
Confidence 23678999999999853 552 2122111 133467777887777654
No 68
>3u4z_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.30A {Tetrahymena thermophila}
Probab=92.92 E-value=2.6 Score=34.71 Aligned_cols=86 Identities=13% Similarity=0.187 Sum_probs=63.2
Q ss_pred cCCCCCceEEEEEEEEeccceeecCCCCCcceEEEEEeeCC-CCEEEEEEechHHHhhhhccCcCcEEEEeeeEEecCCc
Q 003281 225 LNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSD-GGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQK 303 (834)
Q Consensus 225 L~p~~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De~-g~~I~at~f~~~~d~f~~~l~eG~vy~is~~~V~~a~~ 303 (834)
|........+.|.|+.... ..+-+.+.+.|.. .-+.++.+|.+++-.|.+.+..++||++..|.-...+
T Consensus 8 lktskqylsvlaqvvdiqs---------sdknirlkicdnscnqelkvvifpdlcyewrdkfsinkwyyfnefvrqiyn- 77 (109)
T 3u4z_A 8 LKTSKQYLSVLAQVVDIQS---------SDKNIRLKICDNSCNQELKVVIFPDLCYEWRDKFSINKWYYFNEFVRQIYN- 77 (109)
T ss_dssp TTCCCSEEEEEEEEEEEEC---------CSSCEEEEEECSSCSSCEEEEECTTHHHHHTTTCCTTCEEEEEEEEEEESS-
T ss_pred HHHHHHHHHHHHHHhhhhc---------CCCceEEEeecccccceeEEEEchhHHHHHHhhcchhhhhhHHHHHHHHhh-
Confidence 3444566778888875321 1356888888864 4689999999999999999999999999988544333
Q ss_pred ccccCCCeEEEEEccCccEEEec
Q 003281 304 NFNHLHNDLEIFLDMTSMVQLCY 326 (834)
Q Consensus 304 ~~~~~~~~yeI~f~~~T~I~~~~ 326 (834)
....+.-+-++.|.+..
T Consensus 78 ------devqlknnihssikesd 94 (109)
T 3u4z_A 78 ------DEVQLKNNIHSSIKESD 94 (109)
T ss_dssp ------SCEEEECCTTCEEEECS
T ss_pred ------hHHhHhhhhhhhhhccc
Confidence 34566666678888863
No 69
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=92.38 E-value=0.89 Score=45.26 Aligned_cols=81 Identities=20% Similarity=0.296 Sum_probs=55.6
Q ss_pred CCceecccc-----CCC--CCceEEEEEEEEeccceeecCCCCCcceE-EEEEeeCC--CCEEEEEEechHHHhhhhccC
Q 003281 217 SRIIPIAAL-----NPY--MGKWTIKARVTAKGELRHYNNQRGDGKVF-HFDLLDSD--GGEIRVTCFNAVADQFYHQVE 286 (834)
Q Consensus 217 ~~~~pI~~L-----~p~--~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f-~~~L~De~--g~~I~at~f~~~~d~f~~~l~ 286 (834)
.+++.|++| .|. ..+|.+.+-|+.|++.|.-.+ |+-| -+.|.|=. ..+|...+|++..++++ .++
T Consensus 36 ~k~~~l~~L~~~v~~~~~~e~dwv~~GVV~~Ks~pk~~~~----gk~y~~w~l~DL~~~~~~V~lfLFg~a~~~~~-k~~ 110 (200)
T 3ebe_A 36 RKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKITPQSSNN----GKTFSIWRLNDLKDLDKYISLFLFGDVHKEHW-KTD 110 (200)
T ss_dssp CEECCGGGHHHHHHTTCSTTSCEEEEEEEEEEECC-----------CCEEEEEECSSSTTCCEEEEECHHHHHHHT-TCC
T ss_pred CeEEeHHHHHhhccCCCCCcCCEEEEEEEEecCCccCcCC----CCeEEEEEEEecCCCCcEEEEEEechHHHHhc-CcC
Confidence 467778777 221 258999999999999987543 4333 33343322 36899999999999977 489
Q ss_pred cCcEEEEeeeEEecCC
Q 003281 287 AGKIYLVSRGSLKPAQ 302 (834)
Q Consensus 287 eG~vy~is~~~V~~a~ 302 (834)
+|.|+.|-|..+.+.+
T Consensus 111 ~G~ViaiLNP~i~~~~ 126 (200)
T 3ebe_A 111 QGTVIGLLNANPMKPK 126 (200)
T ss_dssp TTEEEEEESCEECCCC
T ss_pred CceEEEEECCEEccCC
Confidence 9999999999876443
No 70
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=92.26 E-value=0.52 Score=43.96 Aligned_cols=71 Identities=18% Similarity=0.325 Sum_probs=46.6
Q ss_pred ceeeEEEEEEEecCCeeEEccCCceeeEEEEEEeccCCcEEEEEEcCCccchhhhhhhhcccCCCccEEEEEEEEEeecC
Q 003281 352 SVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFN 431 (834)
Q Consensus 352 ~~vDVIGvV~~V~~~~~i~~k~g~~~~kr~i~L~D~s~~si~vtLWg~~a~~~~~~l~~~~~~~~~~Vv~ik~~rV~~f~ 431 (834)
..|.++|+|.++.... ....++|.|.|| .|++.+|.+......... -.-..+.+|.+.+ +++.|+
T Consensus 37 ~~V~iVG~V~~~~~~~----------~~~~~~ldD~TG-~I~~~~W~~~~~~~~~~~---~~~~~g~yVrV~G-~v~~f~ 101 (136)
T 4gop_B 37 GQLTFVAVVRNISRNA----------TNVAYSVEDGTG-QIEVRQWLDSSSDDSSKA---SEIRNNVYVRVLG-TLKSFQ 101 (136)
T ss_dssp CEEEEEEEEEEEEECS----------SEEEEEEECSSC-EEEEEEECC--------C---CSCCTTCEEEEEE-EEEEET
T ss_pred EEEEEEEEEEEEEecC----------CeEEEEEECCCC-CEEEEEecccCCcccccc---cccCCCCEEEEEE-EEEEeC
Confidence 4799999999985432 467899999999 799999987543210000 1123567777765 478899
Q ss_pred Ce-EEEe
Q 003281 432 GK-VVGT 437 (834)
Q Consensus 432 G~-~Ls~ 437 (834)
|+ .|..
T Consensus 102 g~~qi~~ 108 (136)
T 4gop_B 102 NRRSISS 108 (136)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
Confidence 96 5554
No 71
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=91.93 E-value=0.56 Score=43.46 Aligned_cols=71 Identities=13% Similarity=0.219 Sum_probs=46.3
Q ss_pred ceeeEEEEEEEecCCeeEEccCCceeeEEEEEEeccCCcEEEEEEcCCccchhhhhhhhcccCCCccEEEEEEEEEeecC
Q 003281 352 SVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFN 431 (834)
Q Consensus 352 ~~vDVIGvV~~V~~~~~i~~k~g~~~~kr~i~L~D~s~~si~vtLWg~~a~~~~~~l~~~~~~~~~~Vv~ik~~rV~~f~ 431 (834)
..|.++|+|.++.+. .....++|.|.||..|++.+|.+......+ . -.-..+.+|.+.+ +++.|+
T Consensus 32 ~~V~iVG~V~~~~~~----------~~~~~~~ldD~TG~~I~~~~W~~~~~~~~~-~---~~~~~g~yVrV~G-~l~~f~ 96 (132)
T 3kdf_D 32 SQVTIVGIIRHAEKA----------PTNIVYKIDDMTAAPMDVRQWVDTDDTSSE-N---TVVPPETYVKVAG-HLRSFQ 96 (132)
T ss_dssp CEEEEEEEEEEEEEC----------SSEEEEEEECSSSSCEEEEEEC-------------CCCCTTCEEEEEE-EEEEET
T ss_pred EEEEEEEEEEEEEEc----------CCeEEEEEECCCCCEEEEEEEccCCCcccc-c---ccccCCCEEEEEE-EEEeEC
Confidence 478999999998533 256789999999978999999876432100 0 1112466776655 488899
Q ss_pred Ce-EEEe
Q 003281 432 GK-VVGT 437 (834)
Q Consensus 432 G~-~Ls~ 437 (834)
|+ .|..
T Consensus 97 g~~qi~~ 103 (132)
T 3kdf_D 97 NKKSLVA 103 (132)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
Confidence 96 5654
No 72
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=89.92 E-value=18 Score=37.24 Aligned_cols=175 Identities=14% Similarity=0.108 Sum_probs=94.5
Q ss_pred CCceEEEEEEEEeccceeecCCCCCcceEEEEEeeC-------CCCEEEEEEec-hHHHhhhhccCcCcEEEEeeeEEec
Q 003281 229 MGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDS-------DGGEIRVTCFN-AVADQFYHQVEAGKIYLVSRGSLKP 300 (834)
Q Consensus 229 ~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De-------~g~~I~at~f~-~~~d~f~~~l~eG~vy~is~~~V~~ 300 (834)
.|+..+.+|+++- ++|...+ |.--+|+|.+.-. +-+-|.+++|+ .+++...+.|+.|+-+.|.. +|+.
T Consensus 30 ~N~viLiGrLtrd-ElRyT~~--g~~a~~~lav~~~~~~~ge~~~df~~vv~wg~k~AE~~~~yl~kG~~V~VeG-rL~~ 105 (257)
T 4dni_A 30 VNHCVMLGVVQNI-QEGFVFE--DKVLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTG-RLRM 105 (257)
T ss_dssp SEEEEEEEEEEEE-EEEEETT--EEEEEEEEEEECCCCCSSCCCEEEEEEEECSHHHHHHHHHHCCTTCEEEEEE-EEEE
T ss_pred CcEEEEEEEEece-EEEECCC--CCEEEEEEEEEecCCCCCCCcccEEEEEEECCHHHHHHHHhccCCCEEEEEE-EEEE
Confidence 4689999999999 9997652 1113466554211 12356677999 89999999999999999975 3433
Q ss_pred CCcccccCCCeEEEEEccCccEEEecCCCCCCccccccccccccccc---cCCCceeeEEEEEEEecCCeeEEccCCcee
Q 003281 301 AQKNFNHLHNDLEIFLDMTSMVQLCYEDDASIPRQQFHFRPINDVEG---MENNSVVDLIGVVSYISPTASLMRKNGTET 377 (834)
Q Consensus 301 a~~~~~~~~~~yeI~f~~~T~I~~~~d~~~~iP~~~~~f~~i~dI~~---~~~~~~vDVIGvV~~V~~~~~i~~k~g~~~ 377 (834)
...+--.-...+|+.+.. |.+. ... +..+.+... |..-..|-+||.| -.|....+ . |+.+
T Consensus 106 ~~~~dG~kr~~~evva~~---v~~~---~G~-------~~~v~~~~g~~~M~~lNkV~LiGrL--~DPElR~t-~-G~~V 168 (257)
T 4dni_A 106 VPQYDGSMRKYYHYPVIQ---VHPG---CGS-------VLKVKLASGAGHMKSVNSVTLVGVV--HDIQSGFV-Y-EDAV 168 (257)
T ss_dssp EEEECSSSSSEEEEEEEE---ECTT---TCE-------EEEGGGSCSSCTTSCEEEEEEEEEE--EEEEEEEE-T-TEEE
T ss_pred eECCCCCcEEEEEEEEEE---EEec---CCc-------ceeeecccccccccccCEEEEEEEc--CCCEEEEe-C-CcEE
Confidence 111101112345555542 1110 000 111122211 2222467889988 23332232 3 6543
Q ss_pred eEEEEEE----eccCC-------cEEEEEEcCCc--cchhhhhhhhcccCCCccEEEEE-EEEEeecC
Q 003281 378 QKRTLHL----RDMSG-------RSVELTLWGNF--CNDDGLRLQHMCDSGVFPILAVK-AGRVSDFN 431 (834)
Q Consensus 378 ~kr~i~L----~D~s~-------~si~vtLWg~~--a~~~~~~l~~~~~~~~~~Vv~ik-~~rV~~f~ 431 (834)
.+-.|-. .|..+ .-++|++||+. |+ ..+++. .+.-|.+. ..+...|.
T Consensus 169 a~FslAv~~~~~~~~~~e~~~~Tdw~~Vv~wgk~~~AE-i~~~L~------KG~~V~VeGrL~tr~~~ 229 (257)
T 4dni_A 169 TQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAE-VKQKVK------EGNVVCVNGRLRLSPQL 229 (257)
T ss_dssp EEEEEEEEEEECCCTTCSCEEEEEEEEEEEESHHHHHH-HHHHCC------TTCEEEEEEEEEEEEEE
T ss_pred EEEEEEECCCccCCCCceEccceEEEEEEEECCccHHH-HHhhCC------CCCEEEEEEEEEeeeEE
Confidence 3322221 12111 25899999999 87 544432 34555554 46666663
No 73
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=88.70 E-value=1.2 Score=46.59 Aligned_cols=68 Identities=12% Similarity=0.257 Sum_probs=46.9
Q ss_pred eeeEEEEEEEecCCeeEEccCCceeeEEEEEEeccCCcEEEEEEcCCccch--hhhhhhhcccCCCccEEEEEEEEEeec
Q 003281 353 VVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCND--DGLRLQHMCDSGVFPILAVKAGRVSDF 430 (834)
Q Consensus 353 ~vDVIGvV~~V~~~~~i~~k~g~~~~kr~i~L~D~s~~si~vtLWg~~a~~--~~~~l~~~~~~~~~~Vv~ik~~rV~~f 430 (834)
.|+++|+|+++..- .....++|.|.||..|++.+|.+.... .... -..+.+|.+.+ +|+.|
T Consensus 73 ~V~ivG~V~~i~~~----------~~~~~~~L~D~TG~~I~~k~W~~~~~~~~~~~~------~~~G~yVrV~G-~v~~f 135 (270)
T 2pi2_A 73 QVTIVGIIRHAEKA----------PTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTV------VPPETYVKVAG-HLRSF 135 (270)
T ss_dssp EEEEEEEEEEEEEC----------SSEEEEEEECSSSSCEEEEEECC-------CCC------CCTTCEEEEEE-EEEEE
T ss_pred EEEEEEEEEEEEec----------cceEEEEEECCCCCEEEEEEEcCcCcccchhhc------CCCCCEEEEEE-EEEec
Confidence 68899999997432 257789999999977999999875321 1111 13567887765 88899
Q ss_pred CCe-EEEe
Q 003281 431 NGK-VVGT 437 (834)
Q Consensus 431 ~G~-~Ls~ 437 (834)
+|+ .|..
T Consensus 136 ~g~~qi~i 143 (270)
T 2pi2_A 136 QNKKSLVA 143 (270)
T ss_dssp TTEEEEEE
T ss_pred CCeeEEEE
Confidence 996 5654
No 74
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=88.27 E-value=3.7 Score=36.16 Aligned_cols=65 Identities=11% Similarity=0.081 Sum_probs=49.6
Q ss_pred CCceEEEEEEEEeccceeecCCCCCcceEEEEEe-----eCCCCE------EEEEEechHHHhhhhccCcCcEEEEeeeE
Q 003281 229 MGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL-----DSDGGE------IRVTCFNAVADQFYHQVEAGKIYLVSRGS 297 (834)
Q Consensus 229 ~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~-----De~g~~------I~at~f~~~~d~f~~~l~eG~vy~is~~~ 297 (834)
+|++.+.+|+++--++|... .| --+.+|.|. ++.|++ |.+++|+..++.+.. +..|+-+.|+++.
T Consensus 2 MN~v~L~GrLt~dPelRyTp--sG-~~V~~f~LA~~s~~~e~g~~r~~~f~i~vv~wGk~AE~~~~-~~kGs~V~VeGrL 77 (101)
T 3en2_A 2 INRLQLVATLVEREVMRYTP--AG-VPIVNCLLSYSGQAMEAQAARQVEFSIEALGAGKMASVLDR-IAPGTVLECVGFL 77 (101)
T ss_dssp CCCEEEEEEEEEECCCEECT--TC-CEEEEEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHHTT-SCTTCEEEEEEEE
T ss_pred cCEEEEEEEECcCccEEECC--CC-CEEEEEEEEEcceEecCCCcEeeeEEEEEEEEhHHHHHHhh-cCCCCEEEEEEEE
Confidence 57899999999999998654 23 256677663 333432 999999999998886 7899999998864
No 75
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=87.12 E-value=2.7 Score=41.76 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=50.3
Q ss_pred CCceEEEEEEEEeccceeecCCCCCcceEEEEEee------C--------CCCEEEEEEechHHHhhhhccCcCcEEEEe
Q 003281 229 MGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLD------S--------DGGEIRVTCFNAVADQFYHQVEAGKIYLVS 294 (834)
Q Consensus 229 ~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~D------e--------~g~~I~at~f~~~~d~f~~~l~eG~vy~is 294 (834)
.++.+|.+||++.-++|...+ + -.+.+|.|+- . +..-|++++|+.+++.+.+.|+.|+.++|.
T Consensus 4 ~N~V~LiGrL~~DPElR~T~~--G-~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~VvawgklAE~v~~~L~KG~~V~Ve 80 (199)
T 3eiv_A 4 ETVITVVGNLVDDPELRFTPS--G-AAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAESLQRGMRVIVQ 80 (199)
T ss_dssp CCEEEEEEEESSCCEEEECTT--C-CEEEEEEEEECC-----------CCCCEEEEEEEETHHHHHHHHHCCTTCEEEEE
T ss_pred ccEEEEEEEECCCCeEEECCC--C-CEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHHHHHHHHhcCCCCEEEEE
Confidence 468899999999988987653 2 2566776642 1 234589999999999999999999999998
Q ss_pred e
Q 003281 295 R 295 (834)
Q Consensus 295 ~ 295 (834)
.
T Consensus 81 G 81 (199)
T 3eiv_A 81 G 81 (199)
T ss_dssp E
T ss_pred E
Confidence 6
No 76
>3rn5_A Interferon-inducible protein AIM2; OB fold, DNA binding, cytosolic, immune system-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 3rn2_A*
Probab=86.28 E-value=26 Score=34.20 Aligned_cols=175 Identities=15% Similarity=0.099 Sum_probs=114.7
Q ss_pred EEEEEEeccceeecCCCCCcceEEEEEeeCCCCEEEEEEechHHHhhhhccCcCcEEEEeeeEEecCCcccccCCCeEEE
Q 003281 235 KARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEI 314 (834)
Q Consensus 235 ~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De~g~~I~at~f~~~~d~f~~~l~eG~vy~is~~~V~~a~~~~~~~~~~yeI 314 (834)
.|-|+.-.+.-+|....|+.++|+-+++-+ ..-.++.+|+-. +.+.+...+++.||++.- +.--|
T Consensus 16 ~VmVLkaTepF~Ye~~E~~~~MFHATVATe-tqfF~VKVfn~~---LKeKF~pk~iI~ISdY~~-----------~~gfL 80 (208)
T 3rn5_A 16 PVMVLKAKKPFTFETQEGKQEMFHATVATE-KEFFFVKVFNTL---LKDKFIPKRIIIIARYYR-----------HSGFL 80 (208)
T ss_dssp EEEEEEECCCEEEEETTEEEEEEEEEEECS-SCEEEEEECCGG---GGGTCCTTCEEEEESBEE-----------CSSCE
T ss_pred EEEEEeccCCeeeecccccceEEEEEEeec-cceEEEEEecch---hhhhcCCCcEEEEEeccc-----------ccceE
Confidence 466666677778877665557999999997 588999999974 567889999999998642 22245
Q ss_pred EEccCccEEEec-CCCCCCcccc----ccccccccccccCCCceeeEEEEEEEecCCeeEEccCCceeeEEEEEEeccCC
Q 003281 315 FLDMTSMVQLCY-EDDASIPRQQ----FHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSG 389 (834)
Q Consensus 315 ~f~~~T~I~~~~-d~~~~iP~~~----~~f~~i~dI~~~~~~~~vDVIGvV~~V~~~~~i~~k~g~~~~kr~i~L~D~s~ 389 (834)
-+++.|.|.+.. +....||... -.=-+|++|.....+.+|+=+=.|.... .+ + ......|.|++|
T Consensus 81 Ei~~~SsVse~~~dq~~eVp~~ii~~A~~TPKI~~L~~q~~Gt~V~G~F~v~KK~------v~--~--~~~~YeI~DnTG 150 (208)
T 3rn5_A 81 EVNSASRVLDAESDQKVNVPLNIIRKAGETPKINTLQTQPLGTIVNGLFVVQKVT------EK--K--KNILFDLSDNTG 150 (208)
T ss_dssp EECTTSEEEECCTTCCCCCCHHHHHHHHSCCCHHHHHTSCSSCEEEEEEEEEEEE------EC--S--SEEEEEEEETTE
T ss_pred EEecccEEEEccCCceeecCHHHHHhcccCcchhhhhcCCCCCEEeEEEEEEEEE------ec--c--ceEEEEEecCCC
Confidence 566778887763 3345566532 1234577887777788777444443321 11 1 245667899999
Q ss_pred cEEEEEEcCCccchhhhhhhhcccCCCccEEEEEEEEEeecCCe-EEEeecceEEE
Q 003281 390 RSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGK-VVGTISTTQLF 444 (834)
Q Consensus 390 ~si~vtLWg~~a~~~~~~l~~~~~~~~~~Vv~ik~~rV~~f~G~-~Ls~~~~S~i~ 444 (834)
.++|...|..... ...+++=+-+.-..++...++ .|-+...|-|.
T Consensus 151 -~MeVvv~G~~~~i---------~CEeGDKLrL~cFeL~~~~~~~qL~s~~HSfik 196 (208)
T 3rn5_A 151 -KMEVLGVRNEDTM---------KCKEGDKVRLTFFTLSKNGEKLQLTSGVHSTIK 196 (208)
T ss_dssp -EEEEEEECSTGGG---------SCCTTCEEEEEEEEEEECSSSEEEECCTTCEEE
T ss_pred -cEEEEEeccCccc---------ccCCCCeeEEEEEEEeccCCeeeEEEecceeEE
Confidence 6999999987653 223455566665666655443 66655555443
No 77
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=86.14 E-value=2.3 Score=37.55 Aligned_cols=66 Identities=14% Similarity=0.087 Sum_probs=52.6
Q ss_pred CCceEEEEEEEEeccceeecCCCCCcceEEEEEee----CCCCE-------EEEEEechHHHhhhhccCcCcEEEEeeeE
Q 003281 229 MGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLD----SDGGE-------IRVTCFNAVADQFYHQVEAGKIYLVSRGS 297 (834)
Q Consensus 229 ~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~D----e~g~~-------I~at~f~~~~d~f~~~l~eG~vy~is~~~ 297 (834)
+++..|.+|+++--++|...+ | -.+.+|.|.- ++.+- |++++|+.+++...+.|..|+-++|.+..
T Consensus 2 ~N~v~L~G~l~~dpelR~t~~--G-~~v~~f~lA~~~~~~~~~~~r~~~~~~~vv~~g~~Ae~~~~~l~KG~~V~V~G~L 78 (104)
T 1txy_A 2 TNRLVLSGTVCRAPLRKVSPS--G-IPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFI 78 (104)
T ss_dssp CEEEEEEEEEEEEEEEEECTT--S-CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSTTHHHHTTCCTTCEEEEEEEE
T ss_pred cEEEEEEEEECCCceEEECCC--C-CEEEEEEEEEeCccccCCceeceeEEEEEEEEhHHHHHHHhhCCCCCEEEEEEEE
Confidence 478899999999999997653 2 2567777642 23467 99999999999999999999999999753
No 78
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=85.91 E-value=5.1 Score=36.10 Aligned_cols=66 Identities=21% Similarity=0.211 Sum_probs=50.2
Q ss_pred CCceEEEEEEEEeccceeecCCCCCcceEEEEEe-----eCCCCE------EEEEEechHHHhhhhccCcCcEEEEeeeE
Q 003281 229 MGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL-----DSDGGE------IRVTCFNAVADQFYHQVEAGKIYLVSRGS 297 (834)
Q Consensus 229 ~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~-----De~g~~------I~at~f~~~~d~f~~~l~eG~vy~is~~~ 297 (834)
+|+..+.+|+++--++|... .| --+.+|.|. ++.|.+ |.+++|+.+++.. ..|..|+-+.|+.+.
T Consensus 1 MNkviL~GrL~~dPelRyTp--sG-~~V~~f~LA~~~~~~~~g~~r~~~~~i~vv~~Gk~AE~~-~~l~kGs~V~VeGrL 76 (115)
T 3fhw_A 1 MNTLELSARVLECGAMRHTP--AG-LPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLL-ADTPLGTEMQVQGFL 76 (115)
T ss_dssp CEEEEEEEEEEEECCCEECT--TS-CEEEEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHH-TTCCTTCEEEEEEEE
T ss_pred CCEEEEEEEECcCcceEECC--CC-CEEEEEEEEEcceeecCCCeeeeeEEEEEEEEhHHHHhh-hccCCCCEEEEEEEE
Confidence 46789999999999999653 22 256777764 233322 9999999999987 889999999999864
Q ss_pred E
Q 003281 298 L 298 (834)
Q Consensus 298 V 298 (834)
-
T Consensus 77 ~ 77 (115)
T 3fhw_A 77 A 77 (115)
T ss_dssp E
T ss_pred E
Confidence 3
No 79
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=85.65 E-value=6.4 Score=37.60 Aligned_cols=72 Identities=13% Similarity=0.136 Sum_probs=48.6
Q ss_pred ceeeEEEEEEEecCCeeEEccCCceeeEEEEEEeccCCcEEEEEEcCCccchhhhhhhhcccCCCccEEEEEEEEEeecC
Q 003281 352 SVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFN 431 (834)
Q Consensus 352 ~~vDVIGvV~~V~~~~~i~~k~g~~~~kr~i~L~D~s~~si~vtLWg~~a~~~~~~l~~~~~~~~~~Vv~ik~~rV~~f~ 431 (834)
..|+|+|+|+++.+.. .+..++|-|.||..|+|.+|=+...... .+. .....+.+|-++| +|+.|+
T Consensus 48 ~~V~IvGiVv~~~~~~----------~~~~ytIDD~TG~~I~cv~w~~~~~~~~-~~~--~~l~~G~~VrV~G-~v~~fr 113 (159)
T 3kf6_A 48 RWIQIVGYIAAIDIYE----------GKHVLTVDDCSGMVLRVVFIIQDDFSMS-KRA--ISMSPGNVVCVFG-KINSFR 113 (159)
T ss_dssp CEEEEEEEEEEEEEET----------TEEEEEEECSSSCEEEEEEEGGGCHHHH-HHH--TTCCTTCEEEEEE-EEECSS
T ss_pred EEEEEEEEEEEEEEeC----------CEEEEEEecCCCCeEEEEEEccCCCCcc-ccc--ccCCCCCEEEEEE-EEEeeC
Confidence 4799999999986321 3578888888898899999987632110 111 1123577887765 568888
Q ss_pred Ce-EEEe
Q 003281 432 GK-VVGT 437 (834)
Q Consensus 432 G~-~Ls~ 437 (834)
|. .|..
T Consensus 114 ~~rqI~~ 120 (159)
T 3kf6_A 114 SEVELIA 120 (159)
T ss_dssp SSCEEEE
T ss_pred CEEEEEE
Confidence 84 6654
No 80
>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila}
Probab=84.91 E-value=7.9 Score=35.30 Aligned_cols=86 Identities=13% Similarity=0.196 Sum_probs=62.2
Q ss_pred ccCCCCCceEEEEEEEEeccceeecCCCCCcceEEEEEeeCC-CCEEEEEEechHHHhhhhccCcCcEEEEeeeEEecCC
Q 003281 224 ALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSD-GGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQ 302 (834)
Q Consensus 224 ~L~p~~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De~-g~~I~at~f~~~~d~f~~~l~eG~vy~is~~~V~~a~ 302 (834)
-|........+.|.|+... . ..+-+.+.+.|.. .-+.++++|.++|-.|.+.+..++||++..|.-...+
T Consensus 125 vlktskqylsvlaqvvdiq---s------sdknirlkicdnscnqelkvvifpdlcyewrdkfsinkwyyfnefvrqiyn 195 (213)
T 3u58_A 125 VLKTSKQYLSVLAQVVDIQ---S------SDKNIRLKICDNSCNQELKVVIFPDLCYEWRDKFSINKWYYFNEFVRQIYN 195 (213)
T ss_dssp HTTCCCSEEEEEEEEEEEE---E------CSSCEEEEEECTTCSCCEEEEECTTTTGGGTTCCCTTCEEEEEEEEECCSS
T ss_pred HHHHhHHHHHHHHHhhccc---c------CCCceEEEeecccccceeEEEEchhHhhHhhhhcchhhhhhHHHHHHHHhh
Confidence 3455566788899998532 1 1356888889864 4689999999999999999999999999987543333
Q ss_pred cccccCCCeEEEEEccCccEEEe
Q 003281 303 KNFNHLHNDLEIFLDMTSMVQLC 325 (834)
Q Consensus 303 ~~~~~~~~~yeI~f~~~T~I~~~ 325 (834)
....+.-+-++.|.+.
T Consensus 196 -------devqlknnihssikes 211 (213)
T 3u58_A 196 -------DEVQLKNNIHSSIKES 211 (213)
T ss_dssp -------SSCEEECCTTCEEEEC
T ss_pred -------hhhhhhhhhhhhhccc
Confidence 2345555556777664
No 81
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=82.94 E-value=2.3 Score=41.65 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=54.6
Q ss_pred CceEEEEEEEEeccceeecCCCCC-cceEEEEEeeCC----CCEEEEEEechHHHhhhhccCcCcEEEEeeeEEecCCcc
Q 003281 230 GKWTIKARVTAKGELRHYNNQRGD-GKVFHFDLLDSD----GGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKN 304 (834)
Q Consensus 230 ~~w~I~aRV~~Ks~lr~~~n~~g~-Gk~f~~~L~De~----g~~I~at~f~~~~d~f~~~l~eG~vy~is~~~V~~a~~~ 304 (834)
....+.+.|+.-...+.- .+|. ....+|.|.|+. +..|.+.+|....+.+=....+|||+.+.+++|+.-+..
T Consensus 43 ~~VNviGVVvd~~~P~~S--~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~LP~V~~~GDIIlL~rvkiq~~~g~ 120 (187)
T 1qzg_A 43 TIVNLFGIVKDFTPSRQS--LHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQVGQPLLLHQITLRSYRDR 120 (187)
T ss_dssp EEEEEEEEEEEEEEEEEC--SSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCCCSTTCEEEEEEEEEEEETTE
T ss_pred CEEEEEEEEEEccCceec--CCCCccEEEEEEEEeCCCCCCCCceEEEEECCChhhCCCCCCCCCEEEEEEEEEEEECCe
Confidence 456788888766555432 1344 567889999976 568999999887777666669999999999999866543
No 82
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=82.89 E-value=3.4 Score=39.47 Aligned_cols=66 Identities=21% Similarity=0.248 Sum_probs=51.2
Q ss_pred CCCceEEEEEEEEeccceeecCCCCCcceEEEEE------eeC-CC------CEEEEEEechHHHhhhhccCcCcEEEEe
Q 003281 228 YMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDL------LDS-DG------GEIRVTCFNAVADQFYHQVEAGKIYLVS 294 (834)
Q Consensus 228 ~~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L------~De-~g------~~I~at~f~~~~d~f~~~l~eG~vy~is 294 (834)
.+++.+|.+||++.-++|...+ | ..+.+|.| .|+ +| .-|++++|+.+++.+...|+.|+.++|.
T Consensus 7 ~mN~V~LiGrL~~dPelr~t~~--G-~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae~~~~~l~KG~~V~Ve 83 (158)
T 3tqy_A 7 GVNKVILIGNLGQDPEVRYTPN--G-NAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAEIVGEYLRKGSKIYIE 83 (158)
T ss_dssp CEEEEEEEEEESSSCEEEECTT--C-CEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHHHHHHHCCTTCEEEEE
T ss_pred ccCEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHHHHHhhcCCCCEEEEE
Confidence 4578999999999888888753 2 25666665 233 22 3479999999999999999999999998
Q ss_pred ee
Q 003281 295 RG 296 (834)
Q Consensus 295 ~~ 296 (834)
..
T Consensus 84 G~ 85 (158)
T 3tqy_A 84 GS 85 (158)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 83
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=80.59 E-value=4.6 Score=37.41 Aligned_cols=65 Identities=22% Similarity=0.258 Sum_probs=50.5
Q ss_pred CCceEEEEEEEEeccceeecCCCCCcceEEEEEe------eCCC------CEEEEEEechHHHhhhhccCcCcEEEEeee
Q 003281 229 MGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL------DSDG------GEIRVTCFNAVADQFYHQVEAGKIYLVSRG 296 (834)
Q Consensus 229 ~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~------De~g------~~I~at~f~~~~d~f~~~l~eG~vy~is~~ 296 (834)
+++.+|.+||++--++|...+ | ..+.+|.|+ |++| .-|.+++|+.+++.+...|+.|+.+.|...
T Consensus 2 mN~V~L~GrL~~dPelr~t~~--G-~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~ 78 (134)
T 2vw9_A 2 FNKVIMVGRLTRNVELKYLPS--G-SAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGR 78 (134)
T ss_dssp CCCEEEEEEESSCCEEEECTT--S-CEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEE
T ss_pred eeEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEeCCeECCCCCCccccEEEEEEEEcHHHHHHHHhCCCCCEEEEEEE
Confidence 477899999999888887643 2 256666662 3333 249999999999999999999999999864
No 84
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=79.83 E-value=17 Score=32.30 Aligned_cols=65 Identities=15% Similarity=0.197 Sum_probs=51.7
Q ss_pred CCceEEEEEEEEeccceeecCCCCCcceEEEEEee------CCCCEEEEEEechHHHhhhhccCcCcEEEEee
Q 003281 229 MGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLD------SDGGEIRVTCFNAVADQFYHQVEAGKIYLVSR 295 (834)
Q Consensus 229 ~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~D------e~g~~I~at~f~~~~d~f~~~l~eG~vy~is~ 295 (834)
++...+.+|+++--++|...+ |...+.+|.|+= ++..-|++++|+.+++...+.|+.|+-+.|..
T Consensus 11 ~~~v~LiGrL~~DPelR~t~~--g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE~~~~yl~KG~~V~VeG 81 (108)
T 3koj_A 11 MNSCILQATVVEAPQLRYAQD--NQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQELQDRCRLNDEVVLEG 81 (108)
T ss_dssp CEEEEEEEEEEEEEEEEECTT--SSSEEEEEEEEECC-----CCEEEEEEEETHHHHHHHHHCCTTCEEEEEE
T ss_pred cceEEEEEEECCCCEEEEeCC--CCEEEEEEEEEECCcccCCCcEEEEEEEEhHHHHHHHHhCCCCCEEEEEE
Confidence 567889999999999997653 212577777642 23457999999999999999999999999986
No 85
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=79.69 E-value=15 Score=32.29 Aligned_cols=63 Identities=16% Similarity=0.100 Sum_probs=48.9
Q ss_pred CceEEEEEEEEeccceeecCCCCCcceEEEEEe-----eCCCC-----E-EEEEEechHHHhhhhccCcCcEEEEeeeE
Q 003281 230 GKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL-----DSDGG-----E-IRVTCFNAVADQFYHQVEAGKIYLVSRGS 297 (834)
Q Consensus 230 ~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~-----De~g~-----~-I~at~f~~~~d~f~~~l~eG~vy~is~~~ 297 (834)
++..+.+|+++.-++|...+ | ..+.+|.|. +++|. . |++++|+.+++ ... |..|+-++|....
T Consensus 8 Nkv~LiG~L~~dPelRytp~--G-~~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae-~~~-l~KG~~v~veGrL 81 (103)
T 3k8a_A 8 NLVSLAALIEKAFPIRYTPA--G-IPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAE-EWQ-YRQGDCATVEGFL 81 (103)
T ss_dssp EEEEEEEEEEEECCCEECTT--S-CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHH-HST-TCTTCEEEEEEEE
T ss_pred cEEEEEEEECCCCceEECCC--C-CEEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhh-hhc-cCCCCEEEEEEEE
Confidence 78999999999999997643 2 257777764 23332 2 89999999999 655 9999999998764
No 86
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=79.62 E-value=6.2 Score=36.57 Aligned_cols=65 Identities=14% Similarity=0.087 Sum_probs=51.8
Q ss_pred CceEEEEEEEEeccceeecCCCCCcceEEEEEe-----eCCCC------EEEEEEechHHHhhhhccCcCcEEEEeeeE
Q 003281 230 GKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL-----DSDGG------EIRVTCFNAVADQFYHQVEAGKIYLVSRGS 297 (834)
Q Consensus 230 ~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~-----De~g~------~I~at~f~~~~d~f~~~l~eG~vy~is~~~ 297 (834)
++..+.+|+++--++|...+ | ..+.+|.|. ++.|. .|++++|+.+++...+.|..|+-++|....
T Consensus 20 NkViLiGrL~~DPElRyTps--G-~~Va~ftLA~~~~~~~~G~~~~~~~~i~vv~wGk~AE~~~~yl~KGs~V~VeGrL 95 (134)
T 1v1q_A 20 NRLVLSGTVCRAPLRKVSPS--G-IPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFI 95 (134)
T ss_dssp EEEEEEEEEEEEEEEEECTT--C-CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCCTTCEEEEEEEE
T ss_pred eEEEEEEEECcCCceEECCC--C-CEEEEEEEEEeCcCcCCCCEecceEEEEEEEEhHHHHHHHHhcCCCCEEEEEEEE
Confidence 78999999999999997653 2 356777763 33331 399999999999999999999999999753
No 87
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=78.89 E-value=7.9 Score=37.29 Aligned_cols=64 Identities=23% Similarity=0.322 Sum_probs=50.5
Q ss_pred CCceEEEEEEEEeccceeecCCCCCcceEEEEEe------eC--------CCCEEEEEEechHHHhhhhccCcCcEEEEe
Q 003281 229 MGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL------DS--------DGGEIRVTCFNAVADQFYHQVEAGKIYLVS 294 (834)
Q Consensus 229 ~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~------De--------~g~~I~at~f~~~~d~f~~~l~eG~vy~is 294 (834)
+++.+|.+||++--++|...+ | -.+.+|.|. |. +..-|++++|+.+++.+...|+.|+.++|.
T Consensus 4 ~N~V~LiG~L~~dPelr~t~~--G-~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~Ve 80 (168)
T 3afp_A 4 DTTITIVGNLTADPELRFTSS--G-AAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVT 80 (168)
T ss_dssp CCEEEEEEEESSSCCCEECTT--S-CEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHHCCTTCEEEEE
T ss_pred cCEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHHHhCCCCCEEEEE
Confidence 578999999999988987653 2 256677664 21 234699999999999999999999999998
Q ss_pred e
Q 003281 295 R 295 (834)
Q Consensus 295 ~ 295 (834)
.
T Consensus 81 G 81 (168)
T 3afp_A 81 G 81 (168)
T ss_dssp E
T ss_pred E
Confidence 6
No 88
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=78.77 E-value=7.7 Score=36.77 Aligned_cols=66 Identities=21% Similarity=0.300 Sum_probs=50.8
Q ss_pred CCCCceEEEEEEEEeccceeecCCCCCcceEEEEEe-eC------C-----CCEEEEEEechHHHhhhhccCcCcEEEEe
Q 003281 227 PYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL-DS------D-----GGEIRVTCFNAVADQFYHQVEAGKIYLVS 294 (834)
Q Consensus 227 p~~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~-De------~-----g~~I~at~f~~~~d~f~~~l~eG~vy~is 294 (834)
|.+++.+|.+||++--++|...+ | ..+.+|.|+ +. + ..-|++++|+.+++.....|+.|+.++|.
T Consensus 14 ~~~N~V~LiGrL~~DPelr~t~~--G-~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~Ve 90 (153)
T 1z9f_A 14 SFFNKIILIGRLVRDPEERYTLS--G-TPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAEFARTYLTKGRLVLVE 90 (153)
T ss_dssp SCCCCEEEEEEESSCCEEEECC-----CEEEEEEEEEEC-----------CEEEEEEEEEHHHHHHHHHHCCTTCEEEEE
T ss_pred cceeEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHHHHHHHhhCCCCCEEEEE
Confidence 44678999999999888887653 2 356677764 21 1 23489999999999999999999999998
Q ss_pred e
Q 003281 295 R 295 (834)
Q Consensus 295 ~ 295 (834)
.
T Consensus 91 G 91 (153)
T 1z9f_A 91 G 91 (153)
T ss_dssp E
T ss_pred E
Confidence 6
No 89
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=78.59 E-value=15 Score=42.09 Aligned_cols=99 Identities=21% Similarity=0.185 Sum_probs=68.6
Q ss_pred CCceeccccCCC--CCceEEEEEEEEeccceeecCCCCCcceEEEEEeeCCCCEEEEEEech-----HHHhhhhccCcCc
Q 003281 217 SRIIPIAALNPY--MGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA-----VADQFYHQVEAGK 289 (834)
Q Consensus 217 ~~~~pI~~L~p~--~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De~g~~I~at~f~~-----~~d~f~~~l~eG~ 289 (834)
+..+.|.+|... ...++|++||.++ |. .|++.-++|.|. ++.|++++..+ ..-++...|..|+
T Consensus 48 ~~~~~i~~l~~~~~g~~V~v~Gwv~~~---R~------~gkl~Fi~LrD~-~g~iQ~v~~~~~~~~~~~~~~~~~l~~es 117 (548)
T 3i7f_A 48 LKYTEIEELVPAMAEKTVTIRARVQAV---RG------KGNMVFLFLRKG-IYTCQALVMKSETISKEFVQFCQKISAES 117 (548)
T ss_dssp CCBCCGGGCSGGGTTCEEEEEEEEEEE---EE------CSSEEEEEEEET-TEEEEEEEECSSSSCHHHHHHHHTCCTTE
T ss_pred CceEEhhhcchhcCCCEEEEEEEEEEE---ec------CCCeEEEEEEEC-CeeEEEEEECCCccCHHHHHHHhCCCCCC
Confidence 456788888743 3578999999753 43 267888889997 57999999752 3345667799999
Q ss_pred EEEEeeeEEecCCcccccCCCeEEEEEccCccEEEe
Q 003281 290 IYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLC 325 (834)
Q Consensus 290 vy~is~~~V~~a~~~~~~~~~~yeI~f~~~T~I~~~ 325 (834)
++.|.+.-++...+.-+.....+||..+.-..+..+
T Consensus 118 ~V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a 153 (548)
T 3i7f_A 118 ICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLA 153 (548)
T ss_dssp EEEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECC
T ss_pred EEEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecC
Confidence 999997655543322223357899998755444443
No 90
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=78.30 E-value=5.4 Score=35.77 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=51.5
Q ss_pred CCCceEEEEEEEEeccceeecCCCCCcceEEEEEe------eCC----CCEEEEEEechHHHhhhhccCcCcEEEEeee
Q 003281 228 YMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL------DSD----GGEIRVTCFNAVADQFYHQVEAGKIYLVSRG 296 (834)
Q Consensus 228 ~~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~------De~----g~~I~at~f~~~~d~f~~~l~eG~vy~is~~ 296 (834)
.+++.+|.+||++.-++|...+ | ..+.+|.|. |++ ..-|.+++|+.+++.+...|+.|+.+.|...
T Consensus 4 mmN~v~l~G~l~~dpe~r~t~~--G-~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~ 79 (116)
T 3vdy_A 4 MFNQVMLVGRLTKDPDLRYTSA--G-AAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGR 79 (116)
T ss_dssp CCCCEEEEEEESSCCEEEECTT--S-CEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEE
T ss_pred eEeEEEEEEEEccCcEEEECCC--C-CEEEEEEEEEeccccCCCCccccEEEEEEEECHHHHHHHHhCCCCCEEEEEEE
Confidence 4688999999999888887643 2 256677663 221 2349999999999999999999999999864
No 91
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=77.31 E-value=5.1 Score=36.49 Aligned_cols=65 Identities=22% Similarity=0.376 Sum_probs=50.2
Q ss_pred CCceEEEEEEEEeccceeecCCCCCcceEEEEEe------eCC-C------CEEEEEEec-hHHHhhhhccCcCcEEEEe
Q 003281 229 MGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL------DSD-G------GEIRVTCFN-AVADQFYHQVEAGKIYLVS 294 (834)
Q Consensus 229 ~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~------De~-g------~~I~at~f~-~~~d~f~~~l~eG~vy~is 294 (834)
+++.+|.+||.+--++|...+ | ..+.+|.|+ |.+ | .-|++++|+ .+++.+...|+.|+.++|.
T Consensus 6 ~N~v~l~Grl~~dpelr~t~~--G-~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~Ae~~~~~l~KG~~V~V~ 82 (124)
T 3ulp_A 6 LNKIMLIGRVGCEPDIKILNG--G-DKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVDLIDKYLRKGRRVYVQ 82 (124)
T ss_dssp EEEEEEEEEECSCCEEEECTT--S-CEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEE
T ss_pred ceEEEEEEEECCCcEEEECCC--C-CEEEEEEEEEccceecccCCcEecccEEEEEEEEEchHHHHHHhhcCCCCEEEEE
Confidence 478999999999888887653 2 256666663 322 2 349999999 8999999999999999998
Q ss_pred ee
Q 003281 295 RG 296 (834)
Q Consensus 295 ~~ 296 (834)
.-
T Consensus 83 G~ 84 (124)
T 3ulp_A 83 GS 84 (124)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 92
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=75.81 E-value=3.6 Score=40.86 Aligned_cols=81 Identities=12% Similarity=0.210 Sum_probs=51.3
Q ss_pred ccccccccccc-cCC----CceeeEEEEEEEecCCeeEEccCCceeeEEEEEEeccCC--cEEEEEEcCCccchhhhhhh
Q 003281 337 FHFRPINDVEG-MEN----NSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSG--RSVELTLWGNFCNDDGLRLQ 409 (834)
Q Consensus 337 ~~f~~i~dI~~-~~~----~~~vDVIGvV~~V~~~~~i~~k~g~~~~kr~i~L~D~s~--~si~vtLWg~~a~~~~~~l~ 409 (834)
..|++|++|.. +.. ....=++|+|.+.++... +++|+... ...|.|..+ ..|.|-|+|+-.++ .
T Consensus 36 ~k~~~l~~L~~~v~~~~~~e~dwv~~GVV~~Ks~pk~--~~~gk~y~--~w~l~DL~~~~~~V~lfLFg~a~~~---~-- 106 (200)
T 3ebe_A 36 RKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKITPQS--SNNGKTFS--IWRLNDLKDLDKYISLFLFGDVHKE---H-- 106 (200)
T ss_dssp CEECCGGGHHHHHHTTCSTTSCEEEEEEEEEEECC---------CCE--EEEEECSSSTTCCEEEEECHHHHHH---H--
T ss_pred CeEEeHHHHHhhccCCCCCcCCEEEEEEEEecCCccC--cCCCCeEE--EEEEEecCCCCcEEEEEEechHHHH---h--
Confidence 47888888865 222 123346799999988864 34566543 466666665 57999999976543 2
Q ss_pred hcccCCCccEEEEEEEEEe
Q 003281 410 HMCDSGVFPILAVKAGRVS 428 (834)
Q Consensus 410 ~~~~~~~~~Vv~ik~~rV~ 428 (834)
+....+.||+|-+..+-
T Consensus 107 --~k~~~G~ViaiLNP~i~ 123 (200)
T 3ebe_A 107 --WKTDQGTVIGLLNANPM 123 (200)
T ss_dssp --TTCCTTEEEEEESCEEC
T ss_pred --cCcCCceEEEEECCEEc
Confidence 23457899999888774
No 93
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=74.46 E-value=7.2 Score=38.42 Aligned_cols=64 Identities=17% Similarity=0.288 Sum_probs=48.5
Q ss_pred CCceEEEEEEEEeccceeecCCCCCcceEEEEEe------eCCC-------CEEEEEEech-HHHhhhhccCcCcEEEEe
Q 003281 229 MGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL------DSDG-------GEIRVTCFNA-VADQFYHQVEAGKIYLVS 294 (834)
Q Consensus 229 ~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~------De~g-------~~I~at~f~~-~~d~f~~~l~eG~vy~is 294 (834)
+++.+|.+||++.-++|...+ | -.+.+|.|+ |.+. .-|++++|++ +++.....|+.|+.++|.
T Consensus 26 mNkV~LiGrLg~DPElR~t~~--G-~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lAe~~~~yL~KGs~V~Ve 102 (193)
T 3pgz_A 26 LNKVILIGNLGADPEIRRLNS--G-DQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVKVVEQYLKKGSKIYIE 102 (193)
T ss_dssp EEEEEEEEEESSCCEEEECTT--S-CEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEE
T ss_pred cCEEEEEEEECCCCeEEECCC--C-CEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHHHHHHhhcCCCCEEEEE
Confidence 478999999999888887653 2 256677663 2222 3389999996 888888899999999998
Q ss_pred e
Q 003281 295 R 295 (834)
Q Consensus 295 ~ 295 (834)
.
T Consensus 103 G 103 (193)
T 3pgz_A 103 G 103 (193)
T ss_dssp E
T ss_pred E
Confidence 5
No 94
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=73.97 E-value=14 Score=41.81 Aligned_cols=98 Identities=15% Similarity=0.090 Sum_probs=63.1
Q ss_pred CceeccccCCC---CCceEEEEEEEEeccceeecCCCCCcce-EEEEEeeCCCCEEEEEEech-------HHHhhhhccC
Q 003281 218 RIIPIAALNPY---MGKWTIKARVTAKGELRHYNNQRGDGKV-FHFDLLDSDGGEIRVTCFNA-------VADQFYHQVE 286 (834)
Q Consensus 218 ~~~pI~~L~p~---~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~-f~~~L~De~g~~I~at~f~~-------~~d~f~~~l~ 286 (834)
..+.|.+|... ....+|.+||.++ |.. |++ .-++|.|. ++.|++++-.+ ..-++...|.
T Consensus 22 ~~~~~~~l~~~~~~g~~V~v~GwV~~~---R~~------g~~l~Fi~LrD~-~g~iQvv~~~~~~~~~~~~~~~~~~~l~ 91 (487)
T 1eov_A 22 KRVKFVDLDEAKDSDKEVLFRARVHNT---RQQ------GATLAFLTLRQQ-ASLIQGLVKANKEGTISKNMVKWAGSLN 91 (487)
T ss_dssp CCCCGGGCCTTTTTTCEEEEEEEEEEE---EEC------SSSEEEEEEEET-TEEEEEEEECCSSSSSCHHHHHHHTTCC
T ss_pred ceeEHHHhcccccCCCEEEEEEEEEEe---ecc------CCccEEEEEEEC-CccEEEEEeccccccccHHHHHHHhcCC
Confidence 34567777643 3578999999763 442 566 66789997 57999998643 2223456799
Q ss_pred cCcEEEEeeeEEecCCcccccCCCeEEEEEccCccEEEe
Q 003281 287 AGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTSMVQLC 325 (834)
Q Consensus 287 eG~vy~is~~~V~~a~~~~~~~~~~yeI~f~~~T~I~~~ 325 (834)
.|+++.|.+.-++...+.-+.....+||....-..+..+
T Consensus 92 ~e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a 130 (487)
T 1eov_A 92 LESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISET 130 (487)
T ss_dssp TTCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECC
T ss_pred CCCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeecc
Confidence 999999998655543322112235788888654444433
No 95
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=73.86 E-value=7.9 Score=35.75 Aligned_cols=76 Identities=9% Similarity=0.175 Sum_probs=47.9
Q ss_pred EEEEEEeCCCeEEEEEehHHHHHHhCCCHHHHHhhhccCCChhHHHHHHHHhcCceEEEEEEEeecccCccceEEEEEEE
Q 003281 562 LQFQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVVK 641 (834)
Q Consensus 562 l~~~i~D~Tg~~~~~~F~e~ae~llG~sA~el~~l~~ee~d~~~~~~~l~~~~~k~~~f~l~~k~~~ynde~rvk~~v~~ 641 (834)
+.+.|.|.||.+.+..|.+..+. .+.+...+. .+ -.+++..+...|++. ....+.+
T Consensus 55 ~~~~ldD~TG~I~~~~W~~~~~~----~~~~~~~~~----------------~g--~yVrV~G~v~~f~g~--~qi~~~~ 110 (136)
T 4gop_B 55 VAYSVEDGTGQIEVRQWLDSSSD----DSSKASEIR----------------NN--VYVRVLGTLKSFQNR--RSISSGH 110 (136)
T ss_dssp EEEEEECSSCEEEEEEECC------------CCSCC----------------TT--CEEEEEEEEEEETTE--EEEEESE
T ss_pred EEEEEECCCCCEEEEEecccCCc----ccccccccC----------------CC--CEEEEEEEEEEeCCE--EEEEEEE
Confidence 57788999999999999864321 000000010 11 136677777789864 4456667
Q ss_pred eeec-ChHHHHHHHHHHHHhh
Q 003281 642 AERY-NYSSETRFILDLMDKL 661 (834)
Q Consensus 642 ~~~v-d~~~e~~~Ll~~i~~~ 661 (834)
+.|+ |+.+..-++|+.|...
T Consensus 111 ir~v~d~Nei~~H~Le~i~~h 131 (136)
T 4gop_B 111 MRPVIDYNEVMFHRLEAVHAH 131 (136)
T ss_dssp EEECSSHHHHHHHHHHHHHHH
T ss_pred EEECCCccHHHHHHHHHHHHH
Confidence 7777 6888899999988643
No 96
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=73.82 E-value=0.81 Score=29.53 Aligned_cols=20 Identities=35% Similarity=0.725 Sum_probs=17.0
Q ss_pred cccccccCccCccCCCCCCC
Q 003281 741 RQSCSSCGAVGHSSMNCPSI 760 (834)
Q Consensus 741 ~~~C~~Cg~~GH~a~~Cp~~ 760 (834)
|..|-.|...||+..+|+..
T Consensus 3 RpYCe~CE~FGH~t~~C~d~ 22 (26)
T 2hqh_E 3 RPYCEICEMFGHWATNCNDD 22 (26)
T ss_dssp -CEETTTTEESSCGGGCCTT
T ss_pred CccchHHHHhCcccccCCcc
Confidence 34899999999999999764
No 97
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=73.28 E-value=5.5 Score=36.60 Aligned_cols=63 Identities=17% Similarity=0.135 Sum_probs=50.7
Q ss_pred CCceEEEEEEEEeccceeecCCCCCcceEEEEEe------eCC--------CCEEEEEEechHHHhhhhccCcCcEEEEe
Q 003281 229 MGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL------DSD--------GGEIRVTCFNAVADQFYHQVEAGKIYLVS 294 (834)
Q Consensus 229 ~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~------De~--------g~~I~at~f~~~~d~f~~~l~eG~vy~is 294 (834)
.++.+|.+||.+--++|...+ |.+.+|.|+ |.+ ..-|++++|+.+++.+...|+.|+-++|.
T Consensus 15 ~N~V~LiGrL~~dPelr~t~~----G~v~~fslAv~~~~~d~~~Ge~~d~~t~w~~v~~wg~~Ae~~~~~l~KG~~V~Ve 90 (128)
T 4dam_A 15 EIMICAVGNVATTPVFRDLAN----GPSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQ 90 (128)
T ss_dssp CCEEEEEEEECSCCEEEEETT----EEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEE
T ss_pred eeEEEEEEEECCCCEEEEcCC----CCEEEEEEEEcCceecccCCceecCCcEEEEEEEEcHHHHHHHHhcCCCCEEEEE
Confidence 478899999999888988753 367777663 322 24589999999999999999999999998
Q ss_pred e
Q 003281 295 R 295 (834)
Q Consensus 295 ~ 295 (834)
.
T Consensus 91 G 91 (128)
T 4dam_A 91 G 91 (128)
T ss_dssp E
T ss_pred E
Confidence 6
No 98
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=72.69 E-value=7.2 Score=36.58 Aligned_cols=65 Identities=22% Similarity=0.260 Sum_probs=51.5
Q ss_pred CCceEEEEEEEEeccceeecCCCCCcceEEEEEe------eC-------CCCEEEEEEechHHHhhhhccCcCcEEEEee
Q 003281 229 MGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL------DS-------DGGEIRVTCFNAVADQFYHQVEAGKIYLVSR 295 (834)
Q Consensus 229 ~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~------De-------~g~~I~at~f~~~~d~f~~~l~eG~vy~is~ 295 (834)
+++.+|.+||++--++|...+ | ..+.+|.|. |+ +..-|.+++|+.+++.+...|+.|+.++|..
T Consensus 5 mN~v~L~GrL~~dPelr~t~~--G-~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G 81 (145)
T 1qvc_A 5 VNKVILVGNLGQDPEVRYMPN--G-GAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEG 81 (145)
T ss_dssp EEEEEEEEEESSCCEEECCSS--S-CCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEE
T ss_pred eEEEEEEEEeCCCCEEEECCC--C-CEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHHHHHHhcCCCCEEEEEE
Confidence 578899999999888887653 2 357777774 22 1346999999999999999999999999986
Q ss_pred e
Q 003281 296 G 296 (834)
Q Consensus 296 ~ 296 (834)
.
T Consensus 82 ~ 82 (145)
T 1qvc_A 82 Q 82 (145)
T ss_dssp E
T ss_pred E
Confidence 4
No 99
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=69.14 E-value=2.6 Score=34.56 Aligned_cols=27 Identities=37% Similarity=0.930 Sum_probs=21.3
Q ss_pred CCCCCcCCCCcCcc-cccCCCCceecCCCCCccc
Q 003281 522 ACPIMIGDRPCNKK-VMNNGDGRWHCDRCDQSVV 554 (834)
Q Consensus 522 aC~~~~~~~~C~KK-v~~~~dg~~~CekC~~~~~ 554 (834)
-|| -|.|. |.....|.|.|.+|++.+.
T Consensus 28 ~C~------fCgk~~vkR~a~GIW~C~~C~~~~A 55 (72)
T 3jyw_9 28 DCS------FCGKKTVKRGAAGIWTCSCCKKTVA 55 (72)
T ss_dssp CCS------SCCSSCBSBCSSSCBCCSSSCCCCC
T ss_pred cCC------CCCCceeEecCCCeEECCCCCCEEe
Confidence 488 68765 5556779999999998764
No 100
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=68.60 E-value=13 Score=34.81 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=38.9
Q ss_pred EEEEEEechHHHhhhhccCcCcEEEEeeeEEecCCcccccCCCeEEEEEccCc
Q 003281 268 EIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLEIFLDMTS 320 (834)
Q Consensus 268 ~I~at~f~~~~d~f~~~l~eG~vy~is~~~V~~a~~~~~~~~~~yeI~f~~~T 320 (834)
.|++++|...+.--.+.|++|+++.|.|.++|.... ..+|-.+..++
T Consensus 66 tlqVtlwd~ha~~ar~~lk~Gd~v~L~Nv~iK~~~~------g~LEG~l~~dr 112 (143)
T 4hik_A 66 SIRCILWDEHDFYCRNYIKEGDYVVMKNVRTKIDHL------GYLECILHGDS 112 (143)
T ss_dssp CEEEEECHHHHHHHTTTCCTTCEEEEEEEEEEECTT------SCEEEEECCCT
T ss_pred EEEEEEECcHHHHHHhhCCCCCEEEEEeEEEeecCC------ceEEEEEcCCC
Confidence 789999999888777889999999999999997762 25777776654
No 101
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=68.47 E-value=3.3 Score=40.35 Aligned_cols=65 Identities=23% Similarity=0.293 Sum_probs=50.0
Q ss_pred CCceEEEEEEEEeccceeecCCCCCcceEEEEEe------eCC-C------CEEEEEEechHHHhhhhccCcCcEEEEee
Q 003281 229 MGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL------DSD-G------GEIRVTCFNAVADQFYHQVEAGKIYLVSR 295 (834)
Q Consensus 229 ~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~------De~-g------~~I~at~f~~~~d~f~~~l~eG~vy~is~ 295 (834)
+++.+|.+||++.-++|...+ | ..+.+|.|. |.+ | .-|++++|+.+++.....|+.|+.++|..
T Consensus 6 ~N~V~LiGrL~~dPelr~t~~--G-~~v~~f~LAv~~~~~d~~~Ge~~~~t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeG 82 (178)
T 1eqq_A 6 VNKVILVGNLGQDPEVRYMPN--G-GAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEG 82 (178)
T ss_dssp EEEEEEEEEESSSCCCCEETT--T-EECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECHHHHHHHHHHCCTTCEEEECC
T ss_pred eeEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEcCCeecCCCCceecccEEEEEEEccHHHHHHHHhcCCCCEEEEEE
Confidence 478999999999989988753 2 245555553 322 2 35899999999999999999999999986
Q ss_pred e
Q 003281 296 G 296 (834)
Q Consensus 296 ~ 296 (834)
.
T Consensus 83 r 83 (178)
T 1eqq_A 83 Q 83 (178)
T ss_dssp E
T ss_pred E
Confidence 4
No 102
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=67.89 E-value=22 Score=32.51 Aligned_cols=75 Identities=15% Similarity=0.175 Sum_probs=46.8
Q ss_pred EEEEEEeCCC-eEEEEEehHHHHHHhCCCHHHHHhhhccCCChhHHHHHHHHhcCceEEEEEEEeecccCccceEEEEEE
Q 003281 562 LQFQIQDHTG-LTWVTAFQECAEEIMGMSAKDLYSLKYVDQNDEKFGEVVRNATFTKYLFKLKVKEETFSDEQRVKSTVV 640 (834)
Q Consensus 562 l~~~i~D~Tg-~~~~~~F~e~ae~llG~sA~el~~l~~ee~d~~~~~~~l~~~~~k~~~f~l~~k~~~ynde~rvk~~v~ 640 (834)
+.+.|.|.|| ++.+..|.+....- .+...+. + +. .++|..+...|++. ....+.
T Consensus 50 ~~~~ldD~TG~~I~~~~W~~~~~~~-----~~~~~~~--~--------------g~--yVrV~G~l~~f~g~--~qi~~~ 104 (132)
T 3kdf_D 50 IVYKIDDMTAAPMDVRQWVDTDDTS-----SENTVVP--P--------------ET--YVKVAGHLRSFQNK--KSLVAF 104 (132)
T ss_dssp EEEEEECSSSSCEEEEEEC--------------CCCC--T--------------TC--EEEEEEEEEEETTE--EEEEEE
T ss_pred EEEEEECCCCCEEEEEEEccCCCcc-----ccccccc--C--------------CC--EEEEEEEEEeECCE--EEEEEE
Confidence 4788999999 99999998753210 0011111 1 11 26666667789864 445566
Q ss_pred Eeeec-ChHHHHHHHHHHHHhh
Q 003281 641 KAERY-NYSSETRFILDLMDKL 661 (834)
Q Consensus 641 ~~~~v-d~~~e~~~Ll~~i~~~ 661 (834)
++.|+ |+.+..-++|+.|...
T Consensus 105 ~ir~v~d~Nei~~H~Le~i~~h 126 (132)
T 3kdf_D 105 KIMPLEDMNEFTTHILEVINAH 126 (132)
T ss_dssp EEEECSSTHHHHHHHHHHHHHH
T ss_pred EEEEcCCccHHHHHHHHHHHHH
Confidence 77777 7888889999988643
No 103
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=66.95 E-value=19 Score=38.02 Aligned_cols=64 Identities=20% Similarity=0.319 Sum_probs=49.9
Q ss_pred CCceEEEEEEEEeccceeecCCCCCcceEEEEEe------eCCC------CEEEEEEechHHHhhhhccCcCcEEEEeee
Q 003281 229 MGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL------DSDG------GEIRVTCFNAVADQFYHQVEAGKIYLVSRG 296 (834)
Q Consensus 229 ~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~------De~g------~~I~at~f~~~~d~f~~~l~eG~vy~is~~ 296 (834)
+++.+|.+||++--++|...+ | -.+.+|.|. |++| .-|.+++|+.+++.+.. |+.|+.+.|...
T Consensus 129 mN~V~L~GrL~~dPelr~t~~--G-~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~~~-l~KG~~V~V~Gr 204 (301)
T 1se8_A 129 MNEVLVLGNVTRDPEIRYTPA--G-DAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKE-LRKGDPVMIMGR 204 (301)
T ss_dssp EEEEEEEEEECSCCEEEECTT--C-CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTT-CCTTCEEEEEEE
T ss_pred eeEEEEEEEECcCCEEEECCC--C-CEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHHHh-cCCCCEEEEEEE
Confidence 578999999998888887653 2 256666663 4333 25999999999999999 999999999864
No 104
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=65.43 E-value=27 Score=39.08 Aligned_cols=97 Identities=13% Similarity=0.004 Sum_probs=62.1
Q ss_pred ceeccccCCCC-CceEEEEEEEEeccceeecCCCCCc-ceEEEEEeeCCCCEEEEEEechHHHhhh--hccCcCcEEEEe
Q 003281 219 IIPIAALNPYM-GKWTIKARVTAKGELRHYNNQRGDG-KVFHFDLLDSDGGEIRVTCFNAVADQFY--HQVEAGKIYLVS 294 (834)
Q Consensus 219 ~~pI~~L~p~~-~~w~I~aRV~~Ks~lr~~~n~~g~G-k~f~~~L~De~g~~I~at~f~~~~d~f~--~~l~eG~vy~is 294 (834)
.+.|++|.... ...+|.+||.++ |. -| ++.-++|.|. +|.|++++-.+....++ ..|..|+++.+.
T Consensus 19 ~~~i~~~~~~~g~~V~v~Gwv~~~---R~------~Gk~~~Fi~LrD~-sg~iQvv~~~~~~~~~~~~~~l~~g~~V~V~ 88 (456)
T 3m4p_A 19 VCNIRDAAGLEGKLVTFKGWAYHI---RK------ARKTLIFVELRDG-SGYCQCVIFGKELCEPEKVKLLTRECSLEIT 88 (456)
T ss_dssp CEECCSTTCCCSSEEEEEEEEEEE---EC------CSSSEEEEEEECS-SCEEEEEEESTTTTCHHHHTTCCTTCEEEEE
T ss_pred EEEhhhhhhcCCCEEEEEEEEEEE---ec------CCCceEEEEEEeC-CccEEEEEecccchhhHHhhcCCCccEEEEE
Confidence 46788886554 478899999753 43 24 4777889997 57899999763222222 358999999998
Q ss_pred eeEEecCCccccc---CCCeEEEEEccCccEEEe
Q 003281 295 RGSLKPAQKNFNH---LHNDLEIFLDMTSMVQLC 325 (834)
Q Consensus 295 ~~~V~~a~~~~~~---~~~~yeI~f~~~T~I~~~ 325 (834)
+.-++...+.-++ +...+||..+.-..+..+
T Consensus 89 G~v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a 122 (456)
T 3m4p_A 89 GRLNAYAGKNHPPEIADILNLEMQVTEWKVIGES 122 (456)
T ss_dssp EEEECCCSSSCCCSCTTBCSSEEEEEEEEEEECC
T ss_pred eEEEecCCcccCcccCCCCcEEEEEeEEEEEecC
Confidence 7554432222111 125788888754444443
No 105
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=65.17 E-value=1.5 Score=31.59 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=17.2
Q ss_pred CcccccccccCccCccCCCCCCC
Q 003281 738 SAARQSCSSCGAVGHSSMNCPSI 760 (834)
Q Consensus 738 ~~~~~~C~~Cg~~GH~a~~Cp~~ 760 (834)
+..|..|-.|.-.|||..+|+..
T Consensus 17 ~~eRpYCd~CEvFGH~t~~Cndd 39 (42)
T 2pzo_E 17 GEERPYCEICEMFGHWATNCNDD 39 (42)
T ss_dssp ----CEETTTTEESSCGGGCCTT
T ss_pred ccCCcccccccccCcccccCCcc
Confidence 34556999999999999999753
No 106
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=64.98 E-value=15 Score=45.17 Aligned_cols=73 Identities=12% Similarity=0.155 Sum_probs=57.1
Q ss_pred CceeccccCCCCCceEEEEEEEEeccceeecCCCCCcceEEEEEeeCCCCEEEEEEech--HHHhhhhccCcCcEEEEee
Q 003281 218 RIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA--VADQFYHQVEAGKIYLVSR 295 (834)
Q Consensus 218 ~~~pI~~L~p~~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De~g~~I~at~f~~--~~d~f~~~l~eG~vy~is~ 295 (834)
.++||++|.....+.+|.+.|... +.|+.++. ..++.|.+.|- .+.|.+..|.. ....+.+.|++|+|+.+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~g~v~~~-~~~~~~~~---~~~~~~~~td~-~~~~~~k~f~~~~~~~~~~~~~~~g~~~~~~g 80 (1041)
T 3f2b_A 6 PVRRLETIVEEERRVVVQGYVFDA-EVSELKSG---RTLLTMKITDY-TNSILVKMFSRDKEDAELMSGVKKGMWVKVRG 80 (1041)
T ss_dssp -CBCGGGCCSCEEEEEEEEEEEEE-EEEECTTS---CEEEEEEEECS-SCEEEEEEECSSHHHHHHHHTCCTTCEEEEEE
T ss_pred CcccHHHhhcccceEEEEEEEEEE-EEEEccCC---CEEEEEEEEeC-CCCEEEEEeecccchHHHHhcCCCCCEEEEEE
Confidence 478999999998999999998864 56666441 36889999997 57899988843 3445667899999999875
No 107
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=64.89 E-value=20 Score=34.39 Aligned_cols=65 Identities=15% Similarity=0.216 Sum_probs=49.5
Q ss_pred CCceEEEEEEEEeccceeecCCCCCcceEEEEEe------eC-------CCCEEEEEEech-HHHhhhhccCcCcEEEEe
Q 003281 229 MGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL------DS-------DGGEIRVTCFNA-VADQFYHQVEAGKIYLVS 294 (834)
Q Consensus 229 ~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~------De-------~g~~I~at~f~~-~~d~f~~~l~eG~vy~is 294 (834)
+++.+|.+||++.-++|...+ | ..+.+|.|+ |+ +..-|++++|+. +++.+...|+.|+.++|.
T Consensus 23 mNkV~LiGrL~~DPelr~t~~--G-~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe~~~~~l~KG~~V~Ve 99 (169)
T 3lgj_A 23 LNKVMLIGYLGDDPESKTMTS--G-AEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIALQYLHKGSKVYIE 99 (169)
T ss_dssp EEEEEEEEEESSCCEEEECTT--S-CEEEEEEEEEEC------------CEEEEEEEECCHHHHHHHHHHCCTTCEEEEE
T ss_pred eeEEEEEEEECCCCeEEECCC--C-CEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHHHHHHhCCCCCEEEEE
Confidence 468999999999888887653 2 256666653 22 134689999999 999999999999999998
Q ss_pred ee
Q 003281 295 RG 296 (834)
Q Consensus 295 ~~ 296 (834)
.-
T Consensus 100 Gr 101 (169)
T 3lgj_A 100 GK 101 (169)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 108
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=64.20 E-value=9.3 Score=36.58 Aligned_cols=65 Identities=17% Similarity=0.242 Sum_probs=50.0
Q ss_pred CCCCCceEEEEEEEEeccceeecCCCCCcceEEEEEe------eCC-------CCEEEEEEechH-HHhhhhccCcCcEE
Q 003281 226 NPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL------DSD-------GGEIRVTCFNAV-ADQFYHQVEAGKIY 291 (834)
Q Consensus 226 ~p~~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~------De~-------g~~I~at~f~~~-~d~f~~~l~eG~vy 291 (834)
...+++..|.+|+++--++|... ..+.+|.|+ |.+ ..-|++++|+.+ ++.+.+.|+.|+-+
T Consensus 19 a~smNkViLiGrLg~DPElR~t~-----~~Va~fsLAt~~r~~~~~~ge~~~~Tdw~~Vv~wgk~lAE~~~~yL~KGs~V 93 (164)
T 3k81_C 19 CKSVNSVTLVGVVHDIQSGFVYE-----DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVV 93 (164)
T ss_dssp -CCEEEEEEEEEEECCCCEESSS-----CEECCEEEEECCC--------CCCCCEEEEEEECCHHHHHHHHHHCCTTCEE
T ss_pred hcCCcEEEEEEEeccCCEEEEcC-----ccEEEEEEEEcCceeeCCCCcCccceEEEEEEEECCHHHHHHHhhcCCCCEE
Confidence 34568899999999999998764 346566553 222 245999999999 99999999999999
Q ss_pred EEee
Q 003281 292 LVSR 295 (834)
Q Consensus 292 ~is~ 295 (834)
+|..
T Consensus 94 ~VeG 97 (164)
T 3k81_C 94 CVNG 97 (164)
T ss_dssp EECC
T ss_pred EEEE
Confidence 9986
No 109
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=64.08 E-value=24 Score=34.80 Aligned_cols=73 Identities=12% Similarity=0.120 Sum_probs=37.8
Q ss_pred ceeeEEEEEEEecCCeeEEccCCceeeEEEEEEe------------ccCCcEEEEEEcCCccchhhhhhhhcccCCCccE
Q 003281 352 SVVDLIGVVSYISPTASLMRKNGTETQKRTLHLR------------DMSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPI 419 (834)
Q Consensus 352 ~~vDVIGvV~~V~~~~~i~~k~g~~~~kr~i~L~------------D~s~~si~vtLWg~~a~~~~~~l~~~~~~~~~~V 419 (834)
..|-|||.|..--++ -.+.+|+.+.+-.|-+- |..-.-|+|++|++.|+...+.|. ....
T Consensus 5 N~V~LiGrL~~DPEl--R~T~~G~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~VvawgklAE~v~~~L~------KG~~ 76 (199)
T 3eiv_A 5 TVITVVGNLVDDPEL--RFTPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAESLQ------RGMR 76 (199)
T ss_dssp CEEEEEEEESSCCEE--EECTTCCEEEEEEEEECC-----------CCCCEEEEEEEETHHHHHHHHHCC------TTCE
T ss_pred cEEEEEEEECCCCeE--EECCCCCEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHHHHHHHHhcC------CCCE
Confidence 356677777652222 22345654443333331 112235899999999987554442 3444
Q ss_pred EEE-EEEEEeecCC
Q 003281 420 LAV-KAGRVSDFNG 432 (834)
Q Consensus 420 v~i-k~~rV~~f~G 432 (834)
|.| -..+...|..
T Consensus 77 V~VeGrL~~rswed 90 (199)
T 3eiv_A 77 VIVQGRLKQRSYED 90 (199)
T ss_dssp EEEEEEEEEEC---
T ss_pred EEEEEEEEeeEEEC
Confidence 545 4467777753
No 110
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=63.32 E-value=2.1 Score=35.31 Aligned_cols=32 Identities=25% Similarity=0.725 Sum_probs=23.7
Q ss_pred CCCCCcCCCCcCc-ccccCCCCceecCCCCCccccceEE
Q 003281 522 ACPIMIGDRPCNK-KVMNNGDGRWHCDRCDQSVVECDYR 559 (834)
Q Consensus 522 aC~~~~~~~~C~K-Kv~~~~dg~~~CekC~~~~~~~~~r 559 (834)
-|| -|.| +|.....|.|.|.+|++.+.---|.
T Consensus 29 ~C~------fCgk~~vkR~a~GIW~C~~C~~~~AGGAy~ 61 (73)
T 1ffk_W 29 KCP------VCGFPKLKRASTSIWVCGHCGYKIAGGAYT 61 (73)
T ss_pred cCC------CCCCceeEEEEeEEEECCCCCcEEECCCcc
Confidence 499 6988 6766677999999999876543333
No 111
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=59.41 E-value=2.9 Score=35.32 Aligned_cols=27 Identities=33% Similarity=1.029 Sum_probs=20.8
Q ss_pred CCCCCcCCCCcCcc-cccCCCCceecCCCCCccc
Q 003281 522 ACPIMIGDRPCNKK-VMNNGDGRWHCDRCDQSVV 554 (834)
Q Consensus 522 aC~~~~~~~~C~KK-v~~~~dg~~~CekC~~~~~ 554 (834)
-|| -|.|. |.....|.|.|.+|++.+.
T Consensus 37 ~Cp------fCGk~~vkR~a~GIW~C~kCg~~~A 64 (83)
T 3j21_i 37 TCP------VCGRKAVKRISTGIWQCQKCGATFA 64 (83)
T ss_dssp CCS------SSCSSCEEEEETTEEEETTTCCEEE
T ss_pred CCC------CCCCceeEecCcCeEEcCCCCCEEe
Confidence 499 69876 5555679999999998754
No 112
>3rlo_A Gamma-interferon-inducible protein 16; HIN200/OB fold/DNA binding, DNA binding/cytosolic DNA sensor cytosol, DNA binding protein; 1.80A {Homo sapiens} PDB: 3rnu_A* 3b6y_A 3rln_A
Probab=59.03 E-value=1.4e+02 Score=29.15 Aligned_cols=174 Identities=14% Similarity=0.138 Sum_probs=113.0
Q ss_pred EEEEEEEeccceeecCCCCCcceEEEEEeeCCCCEEEEEEechHHHhhhhccCcCcEEEEeeeEEecCCcccccCCCeEE
Q 003281 234 IKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLE 313 (834)
Q Consensus 234 I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De~g~~I~at~f~~~~d~f~~~l~eG~vy~is~~~V~~a~~~~~~~~~~ye 313 (834)
..|-|+.-.+.-+|.... +.++|+-+++-+ ..-.++.+|+-. +.+.+...+++.||++.- +.--
T Consensus 12 ~~VmVLkaTepF~Ye~~E-~k~MFHATVATe-tqfF~VKVfn~~---LKeKF~pk~iI~ISdY~~-----------~~gf 75 (204)
T 3rlo_A 12 KEVMVLNATESFVYEPKE-QKKMFHATVATE-NEVFRVKVFNID---LKEKFTPKKIIAIANYVC-----------RNGF 75 (204)
T ss_dssp EEEEEEEECCCEEEETTT-TEEEEEEEEECS-SCEEEEEECCGG---GTTTTCTTCEEEEESCEE-----------ETTE
T ss_pred eEEEEEeccCCceecccc-cceEEEEEEeec-cceEEEEEecch---hhhhcCCCcEEEEEeccc-----------ccce
Confidence 346677777777887666 467899999987 588999999974 567889999999998642 2234
Q ss_pred EEEccCccEEEec-CCCCCCccccc----cccccccccccCCCceeeEEEEEEEecCCeeEEccCCceeeEEEEEEeccC
Q 003281 314 IFLDMTSMVQLCY-EDDASIPRQQF----HFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMS 388 (834)
Q Consensus 314 I~f~~~T~I~~~~-d~~~~iP~~~~----~f~~i~dI~~~~~~~~vDVIGvV~~V~~~~~i~~k~g~~~~kr~i~L~D~s 388 (834)
|-+++.|.|.+.. +....||...- .=.+|++|.....+.+|+=+=.|.... .++ ......|.|++
T Consensus 76 LEi~~~SsVse~~~dq~~eVp~~ii~~A~~TPKI~~L~~q~~Gt~V~G~F~v~KK~------v~~----~~~~YeI~DnT 145 (204)
T 3rlo_A 76 LEVYPFTLVADVNADRNMEIPKGLIRSASVTPKINQLCSQTKGSFVNGVFEVHKKN------VRG----EFTYYEIQDNT 145 (204)
T ss_dssp EEECTTSEEEECCSSSCCCCCHHHHHHHHCCCCHHHHHTCSSCEEEEEEEEEEEEE------EET----TEEEEEEEETT
T ss_pred EEEecccEEEEccCCceeEcCHHHHHhcccCcchhhhhcCCCCCEEeEEEEEEEEE------ecc----ceEEEEEecCC
Confidence 5667778887763 33445665321 234777887777787776444443321 111 24556789999
Q ss_pred CcEEEEEEcCCccchhhhhhhhcccCCCccEEEEEEEEEeecC-C-eEEEeecceEE
Q 003281 389 GRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFN-G-KVVGTISTTQL 443 (834)
Q Consensus 389 ~~si~vtLWg~~a~~~~~~l~~~~~~~~~~Vv~ik~~rV~~f~-G-~~Ls~~~~S~i 443 (834)
| .++|...|..... ...+++=+-+.-..++.-. + ..|-+...|-|
T Consensus 146 G-~MeVvv~G~~~~i---------~CEeGDKLrL~cFeL~~~~~~~~qL~s~~HSfi 192 (204)
T 3rlo_A 146 G-KMEVVVHGRLTTI---------NCEEGDKLKLTCFELAPKSGNTGELRSVIHSHI 192 (204)
T ss_dssp E-EEEEEECGGGGGC---------CCCTTCEEEEEEEEEECCTTTTCEEEEEEEEEE
T ss_pred C-cEEEEEeccCccc---------ccCCCCeeEEEEEEEecccCCceeEEEecceeE
Confidence 9 6999999986642 2334566666666665432 3 36655544544
No 113
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=58.13 E-value=74 Score=29.74 Aligned_cols=63 Identities=16% Similarity=0.261 Sum_probs=48.4
Q ss_pred CCCceEEEEEEEEeccceeecCCCCCcceEEEEEe------eC-------CCCEEEEEEechH-HHhhhhccCcCcEEEE
Q 003281 228 YMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL------DS-------DGGEIRVTCFNAV-ADQFYHQVEAGKIYLV 293 (834)
Q Consensus 228 ~~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~------De-------~g~~I~at~f~~~-~d~f~~~l~eG~vy~i 293 (834)
.+++.+|.+||.+--+ |.. + | ..+.+|.|+ |. +..-|++++|+.+ ++.+.+.|+.|+-++|
T Consensus 5 ~~NkV~LiGrLg~DPe-r~t-~--G-~~va~FslAv~~~~~~~~Ge~~~~~t~w~~vv~wgk~lAe~~~~yl~KG~~V~V 79 (148)
T 3k7u_C 5 SVNSVTLVGVVHDIQS-GFV-Y--E-DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCV 79 (148)
T ss_dssp CCCCEEEEEEEEEEEE-EES-S--S-SEEEEEEEEEECC-----------CEEEEEEEEESHHHHHHHHHHCCTTCEEEE
T ss_pred cCcEEEEEEEeccCCE-eee-C--C-cEEEEEEEEECCceecCCCCEEccccEEEEEEEECcHHHHHHHhhCCCCCEEEE
Confidence 3578999999998877 654 3 2 357777663 21 2346899999997 9999999999999999
Q ss_pred ee
Q 003281 294 SR 295 (834)
Q Consensus 294 s~ 295 (834)
..
T Consensus 80 eG 81 (148)
T 3k7u_C 80 NG 81 (148)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 114
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=57.32 E-value=3.1 Score=37.24 Aligned_cols=27 Identities=41% Similarity=1.096 Sum_probs=21.1
Q ss_pred CCCCCcCCCCcCc-ccccCCCCceecCCCCCccc
Q 003281 522 ACPIMIGDRPCNK-KVMNNGDGRWHCDRCDQSVV 554 (834)
Q Consensus 522 aC~~~~~~~~C~K-Kv~~~~dg~~~CekC~~~~~ 554 (834)
-|| -|.| +|.....|.|.|.+|++.+.
T Consensus 62 tCP------fCGk~~vKR~avGIW~C~~Cgk~fA 89 (116)
T 3cc2_Z 62 ACP------NCGEDRVDRQGTGIWQCSYCDYKFT 89 (116)
T ss_dssp ECS------SSCCEEEEEEETTEEEETTTCCEEE
T ss_pred cCC------CCCCceeEecCceeEECCCCCCEEE
Confidence 399 6998 56555678999999998753
No 115
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=56.15 E-value=51 Score=29.11 Aligned_cols=73 Identities=10% Similarity=0.108 Sum_probs=39.1
Q ss_pred ceeeEEEEEEEecCCeeEEccCC-ceeeEEEEEEe---c-cCCcEEEEEEcCCccchhhhhhhhcccCCCccEEEEEE-E
Q 003281 352 SVVDLIGVVSYISPTASLMRKNG-TETQKRTLHLR---D-MSGRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKA-G 425 (834)
Q Consensus 352 ~~vDVIGvV~~V~~~~~i~~k~g-~~~~kr~i~L~---D-~s~~si~vtLWg~~a~~~~~~l~~~~~~~~~~Vv~ik~-~ 425 (834)
..|-+||.|..--++.. +.+| ..+.+-.|-+- + +.-.-++|++||+.|+...+++. .+.-|++.+ .
T Consensus 12 ~~v~LiGrL~~DPelR~--t~~g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE~~~~yl~------KG~~V~VeGrL 83 (108)
T 3koj_A 12 NSCILQATVVEAPQLRY--AQDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQELQDRCR------LNDEVVLEGRL 83 (108)
T ss_dssp EEEEEEEEEEEEEEEEE--CTTSSSEEEEEEEEECC-----CCEEEEEEEETHHHHHHHHHCC------TTCEEEEEEEE
T ss_pred ceEEEEEEECCCCEEEE--eCCCCEEEEEEEEEECCcccCCCcEEEEEEEEhHHHHHHHHhCC------CCCEEEEEEEE
Confidence 45778888876443332 2344 44433333221 1 11235999999999987655543 345555544 5
Q ss_pred EEeecCC
Q 003281 426 RVSDFNG 432 (834)
Q Consensus 426 rV~~f~G 432 (834)
+...|..
T Consensus 84 ~~r~y~~ 90 (108)
T 3koj_A 84 RINSLLK 90 (108)
T ss_dssp EEEC---
T ss_pred EeeeEEC
Confidence 6666643
No 116
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=55.27 E-value=21 Score=36.98 Aligned_cols=59 Identities=14% Similarity=0.095 Sum_probs=38.8
Q ss_pred ceEEEEEEEEeccceeecCCCCCcceEEEEEeeCCCCEEEEEEechHHH--hhhhccCcCcEEEEeeeEEe
Q 003281 231 KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD--QFYHQVEAGKIYLVSRGSLK 299 (834)
Q Consensus 231 ~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De~g~~I~at~f~~~~d--~f~~~l~eG~vy~is~~~V~ 299 (834)
..+|.++|.++..- ...+.+.|-|.+|++|.|.+|.+.-+ .-...|++|+++.+.. +|+
T Consensus 73 ~V~ivG~V~~i~~~---------~~~~~~~L~D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G-~v~ 133 (270)
T 2pi2_A 73 QVTIVGIIRHAEKA---------PTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAG-HLR 133 (270)
T ss_dssp EEEEEEEEEEEEEC---------SSEEEEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEEE-EEE
T ss_pred EEEEEEEEEEEEec---------cceEEEEEECCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEE-EEE
Confidence 45566666654321 35689999998655899999976422 1245799999998875 444
No 117
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=54.06 E-value=4.2 Score=34.95 Aligned_cols=27 Identities=30% Similarity=0.699 Sum_probs=20.7
Q ss_pred CCCCCcCCCCcCcc-cccCCCCceecCCCCCccc
Q 003281 522 ACPIMIGDRPCNKK-VMNNGDGRWHCDRCDQSVV 554 (834)
Q Consensus 522 aC~~~~~~~~C~KK-v~~~~dg~~~CekC~~~~~ 554 (834)
-|| -|.|. |.....|.|.|.+|++.+.
T Consensus 38 ~Cp------fCgk~~vkR~a~GIW~C~~Cg~~~A 65 (92)
T 3iz5_m 38 FCE------FCGKFAVKRKAVGIWGCKDCGKVKA 65 (92)
T ss_dssp CCT------TTCSSCBEEEETTEEECSSSCCEEE
T ss_pred cCc------ccCCCeeEecCcceEEcCCCCCEEe
Confidence 499 59875 5555679999999998754
No 118
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=53.49 E-value=61 Score=36.02 Aligned_cols=90 Identities=10% Similarity=0.063 Sum_probs=59.7
Q ss_pred eccccCCC--CCceEEEEEEEEeccceeecCCCCCcceEEEEEeeCCCCEEEEEEechHH----HhhhhccCcCcEEEEe
Q 003281 221 PIAALNPY--MGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA----DQFYHQVEAGKIYLVS 294 (834)
Q Consensus 221 pI~~L~p~--~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De~g~~I~at~f~~~~----d~f~~~l~eG~vy~is 294 (834)
.|.+|+.. ....+|.+||.++ |.. |++.-++|.|. +|.|++++-.+.+ -+....|..|+++.+.
T Consensus 6 ~~~~l~~~~~g~~V~v~Gwv~~~---R~~------g~~~Fi~LrD~-~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~ 75 (438)
T 3nem_A 6 YSSEITEELNGQKVKVAGWVWEV---KDL------GGIKFLWIRDR-DGIVQITAPKKKVDPELFKLIPKLRSEDVVAVE 75 (438)
T ss_dssp CGGGCCGGGTTCEEEEEEEEEEE---EEE------TTEEEEEEEET-TEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEE
T ss_pred EHHHcchhcCCCEEEEEEEEEEE---ecC------CCeEEEEEEEC-CeeEEEEEeCCcCCHHHHHHHhcCCCCCEEEEE
Confidence 45555543 3578999999764 432 57888899997 5789999976542 1234569999999998
Q ss_pred eeEEecCCcccccCCCeEEEEEccCccEEEe
Q 003281 295 RGSLKPAQKNFNHLHNDLEIFLDMTSMVQLC 325 (834)
Q Consensus 295 ~~~V~~a~~~~~~~~~~yeI~f~~~T~I~~~ 325 (834)
+.-++... ....+||..+.-..+.++
T Consensus 76 G~v~~~~~-----~~~~~el~~~~i~vl~~~ 101 (438)
T 3nem_A 76 GVVNFTPK-----AKLGFEILPEKIVVLNRA 101 (438)
T ss_dssp EEEEECTT-----STTSEEEEEEEEEEEECB
T ss_pred EEEEeCCC-----CCCcEEEEEEEEEEEecC
Confidence 65444321 235788888654444443
No 119
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=52.78 E-value=21 Score=32.65 Aligned_cols=66 Identities=21% Similarity=0.274 Sum_probs=48.5
Q ss_pred CCCceEEEEEEEEeccceeecCCCCCcceEEEEEe------e------CCC------CEEEEEEech-HHHhhhhccCcC
Q 003281 228 YMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL------D------SDG------GEIRVTCFNA-VADQFYHQVEAG 288 (834)
Q Consensus 228 ~~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~------D------e~g------~~I~at~f~~-~~d~f~~~l~eG 288 (834)
.+++..|.+||++.-++|...+ | ..+.+|.|+ | ++| .-+++++|++ +++.+...|+.|
T Consensus 13 ~mN~V~L~GrL~~dPelr~t~~--G-~~v~~f~lA~~~~~~~~~g~~~~~g~~~~~t~w~~v~~wg~~~Ae~~~~~l~KG 89 (132)
T 3ull_A 13 SLNRVHLLGRVGQDPVLRQVEG--K-NPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKG 89 (132)
T ss_dssp CEEEEEEEEEECSCCEEECCTT--S-CCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHHCCTT
T ss_pred cCcEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEecceeccccccccCCceecceEEEEEEEEchHHHHHHHhhCCCC
Confidence 3578999999999888887653 2 246666653 3 112 3478889995 999999999999
Q ss_pred cEEEEeee
Q 003281 289 KIYLVSRG 296 (834)
Q Consensus 289 ~vy~is~~ 296 (834)
+.++|...
T Consensus 90 ~~V~V~G~ 97 (132)
T 3ull_A 90 SRIYLEGK 97 (132)
T ss_dssp CEEEEEEE
T ss_pred CEEEEEEE
Confidence 99999863
No 120
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=52.01 E-value=4.4 Score=34.33 Aligned_cols=27 Identities=41% Similarity=1.069 Sum_probs=20.8
Q ss_pred CCCCCcCCCCcCcc-cccCCCCceecCCCCCccc
Q 003281 522 ACPIMIGDRPCNKK-VMNNGDGRWHCDRCDQSVV 554 (834)
Q Consensus 522 aC~~~~~~~~C~KK-v~~~~dg~~~CekC~~~~~ 554 (834)
.|| .|.+. +.....|.|.|++|+..+.
T Consensus 29 ~Cp------~CG~~~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 29 ACP------NCGEDRVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp ECS------SSCCEEEEEEETTEEEETTTCCEEE
T ss_pred cCC------CCCCcceeccCCCeEECCCCCCEec
Confidence 499 69984 4555678999999998643
No 121
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=51.39 E-value=4.9 Score=34.53 Aligned_cols=27 Identities=37% Similarity=0.930 Sum_probs=20.5
Q ss_pred CCCCCcCCCCcCcc-cccCCCCceecCCCCCccc
Q 003281 522 ACPIMIGDRPCNKK-VMNNGDGRWHCDRCDQSVV 554 (834)
Q Consensus 522 aC~~~~~~~~C~KK-v~~~~dg~~~CekC~~~~~ 554 (834)
-|| -|.|. |.....|.|.|.+|++.+.
T Consensus 38 ~Cp------fCgk~~vkR~a~GIW~C~~C~~~~A 65 (92)
T 3izc_m 38 DCS------FCGKKTVKRGAAGIWTCSCCKKTVA 65 (92)
T ss_dssp CCS------SSCSSCCEEEETTEEECTTTCCEEE
T ss_pred cCC------CCCCceeeecccceEEcCCCCCEEe
Confidence 498 68764 5555679999999998754
No 122
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=49.56 E-value=4 Score=26.36 Aligned_cols=18 Identities=39% Similarity=0.936 Sum_probs=15.9
Q ss_pred cCcccCCCCccCCCCCCC
Q 003281 787 ECYKCHKTGHWARDCPSL 804 (834)
Q Consensus 787 ~Cy~Cg~~GH~ardCp~~ 804 (834)
-|-.|...||++.||+..
T Consensus 5 YCe~CE~FGH~t~~C~d~ 22 (26)
T 2hqh_E 5 YCEICEMFGHWATNCNDD 22 (26)
T ss_dssp EETTTTEESSCGGGCCTT
T ss_pred cchHHHHhCcccccCCcc
Confidence 499999999999999754
No 123
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=49.55 E-value=55 Score=36.30 Aligned_cols=89 Identities=13% Similarity=0.134 Sum_probs=59.0
Q ss_pred ccccCCC--CCceEEEEEEEEeccceeecCCCCCcceEEEEEeeCCCCEEEEEEechHH--H--hhhhccCcCcEEEEee
Q 003281 222 IAALNPY--MGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA--D--QFYHQVEAGKIYLVSR 295 (834)
Q Consensus 222 I~~L~p~--~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De~g~~I~at~f~~~~--d--~f~~~l~eG~vy~is~ 295 (834)
|.+|... ....+|.+||.++ |.. |++.-++|.|. +|.|++++-.+.+ + ++...|..|+++.+.+
T Consensus 7 ~~~l~~~~~~~~V~v~G~v~~~---R~~------g~~~F~~lrD~-~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~v~v~G 76 (434)
T 1x54_A 7 CQEVKPELDGKKVRLAGWVYTN---MRV------GKKIFLWIRDS-TGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEG 76 (434)
T ss_dssp GGGCCGGGTTCEEEEEEEEEEE---EEE------TTEEEEEEEET-TEEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEE
T ss_pred HHHhhHHhCCCEEEEEEEEEEE---ecC------CCeEEEEEEEC-CEEEEEEEECCcCCHHHHHHHhcCCCCCEEEEEE
Confidence 5555432 3578999999863 443 57888889997 5789999965432 1 2235699999999998
Q ss_pred eEEecCCcccccCCCeEEEEEccCccEEEe
Q 003281 296 GSLKPAQKNFNHLHNDLEIFLDMTSMVQLC 325 (834)
Q Consensus 296 ~~V~~a~~~~~~~~~~yeI~f~~~T~I~~~ 325 (834)
.-++.... ...+||..+.-..+.++
T Consensus 77 ~v~~~~~~-----~~~~el~~~~~~vl~~~ 101 (434)
T 1x54_A 77 IVKADERA-----PGGAEVHVEKLEVIQAV 101 (434)
T ss_dssp EEEECTTS-----GGGEEEEEEEEEEEECC
T ss_pred EEEecCCC-----CccEEEEEeEEEEeecC
Confidence 65544321 24788888754444443
No 124
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=49.34 E-value=57 Score=37.13 Aligned_cols=79 Identities=22% Similarity=0.317 Sum_probs=55.7
Q ss_pred CceEEEEEEEEeccceeecCCCCCc-ceEEEEEeeCCCCEEEEEEechHH------HhhhhccCcCcEEEEeeeEEecCC
Q 003281 230 GKWTIKARVTAKGELRHYNNQRGDG-KVFHFDLLDSDGGEIRVTCFNAVA------DQFYHQVEAGKIYLVSRGSLKPAQ 302 (834)
Q Consensus 230 ~~w~I~aRV~~Ks~lr~~~n~~g~G-k~f~~~L~De~g~~I~at~f~~~~------d~f~~~l~eG~vy~is~~~V~~a~ 302 (834)
...+|.+||..+ |. .| ++.-++|.|. ++.|++++..+.+ +++...|..|+++.+.+.-++..
T Consensus 56 ~~V~v~Grv~~~---R~------~gkk~~F~~LrD~-sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~- 124 (521)
T 3bju_A 56 ITLKVAGRIHAK---RA------SGGKLIFYDLRGE-GVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTK- 124 (521)
T ss_dssp CCEEEEEEEEEE---EE------SSSSEEEEEEEET-TEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEECT-
T ss_pred cEEEEEEEEEEE---ec------CCCCcEEEEEEEC-CEEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEecC-
Confidence 468999999764 43 26 7778889997 5899999976433 23445699999999998655432
Q ss_pred cccccCCCeEEEEEccCccEEEe
Q 003281 303 KNFNHLHNDLEIFLDMTSMVQLC 325 (834)
Q Consensus 303 ~~~~~~~~~yeI~f~~~T~I~~~ 325 (834)
...+||..+.-..+..+
T Consensus 125 ------~ge~ei~~~~i~~l~~~ 141 (521)
T 3bju_A 125 ------KGELSIIPYEITLLSPC 141 (521)
T ss_dssp ------TCCEEEEEEEEEEEECC
T ss_pred ------CCCEEEEEeEEEEeecC
Confidence 24688888755444443
No 125
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=49.05 E-value=52 Score=36.48 Aligned_cols=81 Identities=11% Similarity=0.012 Sum_probs=55.7
Q ss_pred CCceEEEEEEEEeccceeecCCCCCcceEEEEEeeCCCCEEEEEEech--HHHhhhhccCcCcEEEEeeeEEecCCcccc
Q 003281 229 MGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNA--VADQFYHQVEAGKIYLVSRGSLKPAQKNFN 306 (834)
Q Consensus 229 ~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De~g~~I~at~f~~--~~d~f~~~l~eG~vy~is~~~V~~a~~~~~ 306 (834)
....+|.+||.++ |.. |++.-++|.|. +|.|++++-.+ ..+.+ ..|..|+++.+.+.-++....
T Consensus 16 ~~~V~v~Gwv~~~---R~~------g~~~F~~lrD~-~g~iQ~v~~~~~~~~~~~-~~l~~~~~v~v~G~v~~~~~~--- 81 (429)
T 1wyd_A 16 GKEVIWAGWVHLL---RDL------GGKKFIILRDK-TGLGQVVVDKNSSAFGIS-QELTQESVIQVRGIVKADKRA--- 81 (429)
T ss_dssp TCEEEEEEEEEEE---EEE------TTEEEEEEEET-TEEEEEEECTTSTTHHHH-TTCCTTCEEEEEEEEEECSSS---
T ss_pred CCEEEEEEEEEEE---ecC------CCeEEEEEEEC-CeeEEEEEeCChHHHHHH-HhCCCCCEEEEEEEEEecCCC---
Confidence 3578999999763 443 57888889997 67899999653 22333 569999999999865444321
Q ss_pred cCCCeEEEEEccCccEEEe
Q 003281 307 HLHNDLEIFLDMTSMVQLC 325 (834)
Q Consensus 307 ~~~~~yeI~f~~~T~I~~~ 325 (834)
...+||..+.-..+.++
T Consensus 82 --~~~~el~~~~~~vl~~~ 98 (429)
T 1wyd_A 82 --PRGIELHAEEITLLSKA 98 (429)
T ss_dssp --GGGEEEEEEEEEEEECC
T ss_pred --CccEEEEEeEEEEeccC
Confidence 24788888754444443
No 126
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=48.67 E-value=56 Score=36.26 Aligned_cols=92 Identities=16% Similarity=0.183 Sum_probs=56.6
Q ss_pred eccccCCCC-CceEEEEEEEEeccceeecCCCCCcceEEEEEeeCCCCEEEEEEechHHHhhh-hccCcCcEEEEeeeEE
Q 003281 221 PIAALNPYM-GKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFY-HQVEAGKIYLVSRGSL 298 (834)
Q Consensus 221 pI~~L~p~~-~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De~g~~I~at~f~~~~d~f~-~~l~eG~vy~is~~~V 298 (834)
.|++|.... ...+|.+||.++ |.. | +++.-++|.|. +|.|++++-++..+.|. ..|..|+++.+.+.-+
T Consensus 2 ~i~~~~~~~~~~V~v~Gwv~~~---R~~----G-k~~~Fi~LrD~-~g~iQvv~~~~~~~~~~~~~l~~~~~v~v~G~v~ 72 (435)
T 2xgt_A 2 KIRDLVKHRNERVCIKGWIHRM---RRQ----G-KSLMFFILRDG-TGFLQVLLMDKLCQTYDALTVNTECTVEIYGAIK 72 (435)
T ss_dssp CGGGGGGGTTSEEEEEEEEEEE---EEC----T-TSEEEEEEECS-SCEEEEEEEGGGGSSHHHHHCCTTCEEEEEEEEE
T ss_pred chhhhhhcCCCEEEEEEEEEEe---ccc----C-CCcEEEEEEEC-CceEEEEECCcchhHHHHhcCCCCCEEEEEEEEE
Confidence 466665443 478999999763 442 1 25777889997 57899998754322221 1489999999998654
Q ss_pred ecCCcccccCCCeEEEEEccCccEE
Q 003281 299 KPAQKNFNHLHNDLEIFLDMTSMVQ 323 (834)
Q Consensus 299 ~~a~~~~~~~~~~yeI~f~~~T~I~ 323 (834)
+...+. .....+||..+.-..+.
T Consensus 73 ~~~~~~--~~~g~~El~~~~~~vl~ 95 (435)
T 2xgt_A 73 EVPEGK--EAPNGHELIADFWKIIG 95 (435)
T ss_dssp ECC--------TTEEEEEEEEEEEE
T ss_pred ecCCCc--CCCCcEEEEEEEEEEee
Confidence 432221 22357888886544443
No 127
>3nbi_A RECQ-mediated genome instability protein 1; OB-fold, RPA-like, protein binding; 2.00A {Homo sapiens}
Probab=48.05 E-value=15 Score=36.78 Aligned_cols=39 Identities=26% Similarity=0.241 Sum_probs=31.2
Q ss_pred ce-EEEEEcccccccccccccchhhhhhcCCcccccEEEEce
Q 003281 25 QR-FRMVLSDGSRSQQGMLATQRNELVTSGLLQIGSVVRLTK 65 (834)
Q Consensus 25 ~R-yrl~lSDG~~~~~~mLatqln~lv~~g~l~~gsiv~l~~ 65 (834)
.| ++|.|+||...+.||--..+..+-. .+..|+-|.|+.
T Consensus 135 ~rmLkL~LtDG~~~i~AiE~~~i~~l~~--~~~pGtKill~~ 174 (216)
T 3nbi_A 135 SRMLMLQLTDGIVQIQGMEYQPIPILHS--DLPPGTKILIYG 174 (216)
T ss_dssp CCCEEEEEESSSCEEEEEECSCCTTCCT--TCCTTCEEEEEE
T ss_pred ceEEEEEEcCCCeEEEEEEcccchhccc--CCCCCceEEEeC
Confidence 57 9999999999999998777766532 388899888853
No 128
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=47.94 E-value=4.6 Score=35.32 Aligned_cols=26 Identities=35% Similarity=0.939 Sum_probs=20.2
Q ss_pred CCCCcCCCCcCcc-cccCCCCceecCCCCCccc
Q 003281 523 CPIMIGDRPCNKK-VMNNGDGRWHCDRCDQSVV 554 (834)
Q Consensus 523 C~~~~~~~~C~KK-v~~~~dg~~~CekC~~~~~ 554 (834)
|| -|.|. |.....|.|.|.+|++.+.
T Consensus 39 Cp------fCgk~~vKR~a~GIW~C~kCg~~~A 65 (103)
T 4a17_Y 39 CP------FCGKVAVKRAAVGIWKCKPCKKIIA 65 (103)
T ss_dssp CT------TTCCEEEEEEETTEEEETTTTEEEE
T ss_pred CC------CCCCceeeecCcceEEcCCCCCEEe
Confidence 98 69765 5555679999999998653
No 129
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=47.61 E-value=78 Score=34.94 Aligned_cols=81 Identities=14% Similarity=0.112 Sum_probs=55.6
Q ss_pred ccccCCC-CCceEEEEEEEEeccceeecCCCCCcceEEEEEeeCCCCEEEEEEechHHHhhhhccC-cCcEEEEeeeEEe
Q 003281 222 IAALNPY-MGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVE-AGKIYLVSRGSLK 299 (834)
Q Consensus 222 I~~L~p~-~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De~g~~I~at~f~~~~d~f~~~l~-eG~vy~is~~~V~ 299 (834)
|.+|... ....+|.+||.++ |. .|++.-++|.|. +|.|++++-. ..|. .|+++.+.+.-++
T Consensus 5 ~~~l~~~~~~~V~v~Gwv~~~---R~------~g~~~F~~lrD~-~g~iQ~v~~~-------~~l~~~~~~v~v~G~v~~ 67 (422)
T 1n9w_A 5 VRDLKAHVGQEVELLGFLHWR---RD------LGRIQFLLLRDR-SGVVQVVTGG-------LKLPLPESALRVRGLVVE 67 (422)
T ss_dssp GGGGGGCTTSEEEEEEEEEEE---EE------CSSEEEEEEEET-TEEEEEEEES-------CCCCCTTCEEEEEEEEEE
T ss_pred HHHHHhcCCCEEEEEEEEEEE---ec------CCCeEEEEEEEC-CEEEEEEEEc-------cccCCCCCEEEEEEEEEe
Confidence 4555422 3578999999763 43 267888899997 5789999854 5689 9999999886544
Q ss_pred cCCcccccCCCeEEEEEccCccEEE
Q 003281 300 PAQKNFNHLHNDLEIFLDMTSMVQL 324 (834)
Q Consensus 300 ~a~~~~~~~~~~yeI~f~~~T~I~~ 324 (834)
.... ...+||..+.-..+.+
T Consensus 68 ~~~~-----~~~~el~~~~~~vl~~ 87 (422)
T 1n9w_A 68 NAKA-----PGGLEVQAKEVEVLSP 87 (422)
T ss_dssp CTTS-----TTSEEEEEEEEEEEEC
T ss_pred cCCC-----CccEEEEEeEEEEecc
Confidence 4321 3578888865444443
No 130
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=46.77 E-value=8.4 Score=29.42 Aligned_cols=24 Identities=21% Similarity=0.473 Sum_probs=19.0
Q ss_pred eeCCCCCcCCCCcCcccccCCCCceecCCCCCc
Q 003281 520 YTACPIMIGDRPCNKKVMNNGDGRWHCDRCDQS 552 (834)
Q Consensus 520 Y~aC~~~~~~~~C~KKv~~~~dg~~~CekC~~~ 552 (834)
..-|| .|+..+ ..|.|.|.||+.+
T Consensus 14 k~iCp------kC~a~~---~~gaw~CrKCG~~ 37 (51)
T 3j21_g 14 KYVCL------RCGATN---PWGAKKCRKCGYK 37 (51)
T ss_dssp EEECT------TTCCEE---CTTCSSCSSSSSC
T ss_pred CccCC------CCCCcC---CCCceecCCCCCc
Confidence 34599 699985 4589999999976
No 131
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=46.58 E-value=94 Score=35.83 Aligned_cols=87 Identities=17% Similarity=0.224 Sum_probs=58.1
Q ss_pred CCceEEEEEEEEeccceeecCCCCCcceEEEEEeeCCCCEEEEEEechHHHh--hhhccCcCcEEEEeeeEEecCCcccc
Q 003281 229 MGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQ--FYHQVEAGKIYLVSRGSLKPAQKNFN 306 (834)
Q Consensus 229 ~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De~g~~I~at~f~~~~d~--f~~~l~eG~vy~is~~~V~~a~~~~~ 306 (834)
....+|.+||.++ |.. |++.-++|.|. +|.|++++-.+..+. ....|..|+++.+.+.-++...+..+
T Consensus 15 g~~V~l~GwV~~~---R~~------G~~~Fi~LrD~-~g~iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n 84 (585)
T 1c0a_A 15 GQQVTLCGWVNRR---RDL------GSLIFIDMRDR-EGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNIN 84 (585)
T ss_dssp TCEEEEEEEEEEE---EEC------SSCEEEEEEET-TEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCTTTCC
T ss_pred CCEEEEEEEEEEE---ecC------CCcEEEEEEEC-CeeEEEEEeCCchHHHHHHhcCCCCCEEEEEeEEEccCccccc
Confidence 3568999999753 432 57888899997 578999986543222 23569999999999865544332222
Q ss_pred c--CCCeEEEEEccCccEEEe
Q 003281 307 H--LHNDLEIFLDMTSMVQLC 325 (834)
Q Consensus 307 ~--~~~~yeI~f~~~T~I~~~ 325 (834)
+ ....+||..+.-..+..+
T Consensus 85 ~~~~~geiEl~~~~i~vl~~a 105 (585)
T 1c0a_A 85 RDMATGEIEVLASSLTIINRA 105 (585)
T ss_dssp TTSTTTTEEEEEEEEEEEECC
T ss_pred ccCCCccEEEEEeEEEEEecc
Confidence 2 235799988765555443
No 132
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=44.03 E-value=81 Score=36.34 Aligned_cols=87 Identities=15% Similarity=0.123 Sum_probs=57.0
Q ss_pred CCceEEEEEEEEeccceeecCCCCCcceEEEEEeeCCCCEEEEEEechH-HHhhhhccCcCcEEEEeeeEEecCCccccc
Q 003281 229 MGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAV-ADQFYHQVEAGKIYLVSRGSLKPAQKNFNH 307 (834)
Q Consensus 229 ~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De~g~~I~at~f~~~-~d~f~~~l~eG~vy~is~~~V~~a~~~~~~ 307 (834)
....+|.+||.++ |.. |++.-++|.|. +|.|++++-.+. .-++...|..|+++.|.+.-++.....-+.
T Consensus 16 g~~V~l~GwV~~~---R~~------G~~~Fi~LrD~-~g~iQvv~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~ 85 (580)
T 1l0w_A 16 GEEVVLEGWVNRR---RDL------GGLIFLDLRDR-EGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPEPNPRL 85 (580)
T ss_dssp TCEEEEEEEEEEE---EEC------SSCEEEEEEET-TEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECSSCCTTS
T ss_pred CCEEEEEEEEEEE---ecC------CCeEEEEEEEC-CeeEEEEEeCChhHHHHHhcCCCCcEEEEEEEEEcCCCcCccC
Confidence 3578999999753 442 57888899997 578999986542 112335699999999998655432111121
Q ss_pred CCCeEEEEEccCccEEEe
Q 003281 308 LHNDLEIFLDMTSMVQLC 325 (834)
Q Consensus 308 ~~~~yeI~f~~~T~I~~~ 325 (834)
....+||..+.-..+..+
T Consensus 86 ~~ge~Ei~~~~i~vl~~a 103 (580)
T 1l0w_A 86 ATGRVEVELSALEVLAEA 103 (580)
T ss_dssp TTTTEEEEEEEEEEEECC
T ss_pred CCccEEEEEeEEEEeccC
Confidence 235789988765555443
No 133
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=43.37 E-value=80 Score=27.90 Aligned_cols=35 Identities=20% Similarity=0.312 Sum_probs=23.0
Q ss_pred EEEEEEcCCccchhhhhhhhcccCCCccEEEEEE-EEEeecC
Q 003281 391 SVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKA-GRVSDFN 431 (834)
Q Consensus 391 si~vtLWg~~a~~~~~~l~~~~~~~~~~Vv~ik~-~rV~~f~ 431 (834)
-+.|++||+.|+...+.+. .+..|.+.+ .+...|.
T Consensus 51 ~~~v~~wg~~Ae~~~~~l~------KG~~V~V~G~l~~~~~~ 86 (116)
T 3vdy_A 51 YVNCTLWRKTAENTALYCQ------KGSLVGVSGRIQTRSYE 86 (116)
T ss_dssp EEEEEEEHHHHHHHHHHCC------TTCEEEEEEEEEEEEEC
T ss_pred EEEEEEECHHHHHHHHhCC------CCCEEEEEEEEEeeEEE
Confidence 4999999999976544432 345555544 5666665
No 134
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=42.22 E-value=77 Score=29.91 Aligned_cols=35 Identities=9% Similarity=0.104 Sum_probs=22.7
Q ss_pred EEEEEEcCCccchhhhhhhhcccCCCccEEEEEE-EEEeecC
Q 003281 391 SVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKA-GRVSDFN 431 (834)
Q Consensus 391 si~vtLWg~~a~~~~~~l~~~~~~~~~~Vv~ik~-~rV~~f~ 431 (834)
-+.|++||+.|+...+.|. .+..|.|.+ .+...|.
T Consensus 57 ~i~vv~wg~~Ae~~~~~l~------KG~~V~VeG~L~~~~~~ 92 (158)
T 3tqy_A 57 WHRIAFFNRLAEIVGEYLR------KGSKIYIEGSLRTRKWQ 92 (158)
T ss_dssp EEEEEEETHHHHHHHHHCC------TTCEEEEEEEEEEEEEE
T ss_pred EEEEEEEhHHHHHHHhhcC------CCCEEEEEEEEEeeeEE
Confidence 4799999999876544432 345555544 5666663
No 135
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=41.57 E-value=6.5 Score=28.46 Aligned_cols=21 Identities=33% Similarity=0.691 Sum_probs=17.9
Q ss_pred ccccccccCccCccCCCCCCC
Q 003281 740 ARQSCSSCGAVGHSSMNCPSI 760 (834)
Q Consensus 740 ~~~~C~~Cg~~GH~a~~Cp~~ 760 (834)
.|..|-.|--.|||..+|+..
T Consensus 19 eRpYCe~CEVFGH~t~eC~dd 39 (42)
T 3e2u_E 19 ERPYCEICEMFGHWATNCNDD 39 (42)
T ss_dssp -CCEETTTTEESSCGGGCCTT
T ss_pred cCcccccceecccccccCCcc
Confidence 356999999999999999864
No 136
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=41.34 E-value=86 Score=35.67 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=53.4
Q ss_pred CceEEEEEEEEeccceeecCCCCCcceEEEEEeeCCCCEEEEEEechHHH----hhhhccCcCcEEEEeeeEEecCCccc
Q 003281 230 GKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVAD----QFYHQVEAGKIYLVSRGSLKPAQKNF 305 (834)
Q Consensus 230 ~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De~g~~I~at~f~~~~d----~f~~~l~eG~vy~is~~~V~~a~~~~ 305 (834)
...+|.+||.++ |.. |++.-++|.|. +|.|++.+-.+.+. +....|..|+++.+.+.-++..
T Consensus 87 ~~V~v~GwV~~~---R~~------Gk~~Fi~LrD~-sg~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~---- 152 (529)
T 4ex5_A 87 LEVAIAGRMMLK---RVM------GKASFATVQDG-SGQIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFRTN---- 152 (529)
T ss_dssp CEEEEEEEEEEE---EEE------TTEEEEEEECS-SCEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECT----
T ss_pred cEEEEEEEEEee---ecC------CCeEEEEEEeC-CeeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEcC----
Confidence 468899999764 443 67877889998 57999998765421 2334599999999987554422
Q ss_pred ccCCCeEEEEEccCccEEE
Q 003281 306 NHLHNDLEIFLDMTSMVQL 324 (834)
Q Consensus 306 ~~~~~~yeI~f~~~T~I~~ 324 (834)
...+||..+.-+.+.+
T Consensus 153 ---~gelel~~~~i~vLs~ 168 (529)
T 4ex5_A 153 ---KGELSVKCTQLRLLAK 168 (529)
T ss_dssp ---TSCEEEEEEEEEEEEC
T ss_pred ---CCcEEEEEEEEEEEec
Confidence 2468887765444444
No 137
>2xvs_A Tetratricopeptide repeat protein 5; antitumor protein, P53 cofactor, stress-response; 1.80A {Homo sapiens}
Probab=39.52 E-value=54 Score=31.30 Aligned_cols=73 Identities=26% Similarity=0.382 Sum_probs=53.4
Q ss_pred CCceeccccCCCCC-ceEEEEEEEEeccceeecCCCCCcceEEEEEeeCCCCEEEEEEechHHHhhhhccCcCcEEEEee
Q 003281 217 SRIIPIAALNPYMG-KWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSR 295 (834)
Q Consensus 217 ~~~~pI~~L~p~~~-~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De~g~~I~at~f~~~~d~f~~~l~eG~vy~is~ 295 (834)
-...+|.+|.++.| .-.|.+||+-- +.+ .+.--|.|.++|.+|.-.-++++|-. +.+. +.+||.+.|-.
T Consensus 61 l~~~~l~~L~~G~N~g~vv~gKVv~~--i~~-----e~~vP~~f~~vD~~g~c~avsVYNl~-~~~G--~~iGDsV~Ipe 130 (166)
T 2xvs_A 61 LELKPLSTLQPGVNSGAVILGKVVFS--LTT-----EEKVPFTFGLVDSDGPCYAVMVYNIV-QSWG--VLIGDSVAIPE 130 (166)
T ss_dssp CEECCGGGCCSEECTTEEEEEEEEEE--ECC-----TTCCSEEEEEESSSSCCEEEEECCCC-SSCC--CCTTCEEEEES
T ss_pred eeeeeHHHcccccCCCcEEEEEEEEE--ecC-----CCCCceEEEEECCCCCEEEEEEEecc-CCcc--eEecCEEEeCC
Confidence 45679999999965 77899999742 211 22345899999999999999999842 2222 77899999876
Q ss_pred eEEe
Q 003281 296 GSLK 299 (834)
Q Consensus 296 ~~V~ 299 (834)
-.|+
T Consensus 131 P~v~ 134 (166)
T 2xvs_A 131 PNLR 134 (166)
T ss_dssp CEEE
T ss_pred CcEE
Confidence 5554
No 138
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=39.12 E-value=18 Score=45.39 Aligned_cols=76 Identities=20% Similarity=0.251 Sum_probs=0.0
Q ss_pred ccccccccccc----cCCCceeeEEEEEEEecCCeeEEccCCceeeEEEEEEeccCCcEEEEEEcCCccchhhhhhhhcc
Q 003281 337 FHFRPINDVEG----MENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMSGRSVELTLWGNFCNDDGLRLQHMC 412 (834)
Q Consensus 337 ~~f~~i~dI~~----~~~~~~vDVIGvV~~V~~~~~i~~k~g~~~~kr~i~L~D~s~~si~vtLWg~~a~~~~~~l~~~~ 412 (834)
+..+++.+|.. ...+..|-|.|+|+.+.... +|+|+ ..--++|.|.+| .+++++|.+..+.....+.
T Consensus 1024 ~~~~~~~~l~~~~~~~~~g~~v~v~G~v~~~~~~~---Tk~G~--~maf~tleD~tg-~~evvvf~~~~~~~~~~l~--- 1094 (1220)
T 2hpi_A 1024 VASCTIEELSEFVRELPGKPKVLLSGMVEEVVRKP---TRSGG--MMARFTLSDETG-ALEVVVFGRAYEGVSPKLK--- 1094 (1220)
T ss_dssp HCSSCTTTHHHHHSSSSSSCEEEEEEEECCC-----------------CEEEEETTE-EEEEC-------------C---
T ss_pred cCCccHHHHhhhhhhccCCCeEEEEEEEEEEEEee---cCCCC--eEEEEEEEECCC-CEEEEEcHHHHHHHHHHhc---
Q ss_pred cCCCccEEEEEE
Q 003281 413 DSGVFPILAVKA 424 (834)
Q Consensus 413 ~~~~~~Vv~ik~ 424 (834)
...+|.+++
T Consensus 1095 ---~~~~~~v~G 1103 (1220)
T 2hpi_A 1095 ---EDIPLLVLA 1103 (1220)
T ss_dssp ---TTCEEEEEE
T ss_pred ---cCCEEEEEE
No 139
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=38.38 E-value=70 Score=32.80 Aligned_cols=61 Identities=18% Similarity=0.261 Sum_probs=47.5
Q ss_pred CCceEEEEEEEEeccceeecCCCCCcceEEEEEe------eCCCC-------EEEEEEechH--HHhhhhccCcCcEEEE
Q 003281 229 MGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL------DSDGG-------EIRVTCFNAV--ADQFYHQVEAGKIYLV 293 (834)
Q Consensus 229 ~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~------De~g~-------~I~at~f~~~--~d~f~~~l~eG~vy~i 293 (834)
.++..|.+|+ +--++|... | ..+.+|.|+ |.+++ -|++++|+.+ ++ +.+.|+.|+-++|
T Consensus 146 lNkV~LiGrL-~DPElR~t~---G-~~Va~FslAv~~~~~~~~~~e~~~~Tdw~~Vv~wgk~~~AE-i~~~L~KG~~V~V 219 (257)
T 4dni_A 146 VNSVTLVGVV-HDIQSGFVY---E-DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAE-VKQKVKEGNVVCV 219 (257)
T ss_dssp EEEEEEEEEE-EEEEEEEET---T-EEEEEEEEEEEEEECCCTTCSCEEEEEEEEEEEESHHHHHH-HHHHCCTTCEEEE
T ss_pred cCEEEEEEEc-CCCEEEEeC---C-cEEEEEEEEECCCccCCCCceEccceEEEEEEEECCccHHH-HHhhCCCCCEEEE
Confidence 3688999999 888888764 2 467777773 33333 4899999999 88 8888999999999
Q ss_pred ee
Q 003281 294 SR 295 (834)
Q Consensus 294 s~ 295 (834)
..
T Consensus 220 eG 221 (257)
T 4dni_A 220 NG 221 (257)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 140
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=38.21 E-value=61 Score=33.26 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=49.2
Q ss_pred CCceEEEEEEEEeccceeecCCCCCcceEEEEEe-eC--------CCCEEEEEEechHHHhhhhccCcCcEEEEee
Q 003281 229 MGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL-DS--------DGGEIRVTCFNAVADQFYHQVEAGKIYLVSR 295 (834)
Q Consensus 229 ~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~-De--------~g~~I~at~f~~~~d~f~~~l~eG~vy~is~ 295 (834)
+++.+|.+||++--++|...+ | -.+.+|.|. +. +..-|.+++|+.+++... .|+.|+.+.|..
T Consensus 128 ~N~v~l~G~l~~dpe~r~t~~--G-~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae~~~-~l~KG~~V~V~G 199 (264)
T 2fxq_A 128 LNQVILMGNLTRDPDLRYTPQ--G-TAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWAS-ELRKGDGLLVIG 199 (264)
T ss_dssp CEEEEEEEEESSCCCCEECTT--C-CEEEEEEEEEECCC-------EEEEEEEEEHHHHHHHT-TCCTTCEEEEEE
T ss_pred eEEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHHHhh-hcCCCCEEEEEE
Confidence 578999999999888887653 2 256677663 21 124699999999999999 999999999986
No 141
>2i46_A Adrenocortical dysplasia protein homolog; TPP1, OB fold, POT1 binding, protein binding; 2.70A {Homo sapiens}
Probab=37.76 E-value=24 Score=32.15 Aligned_cols=51 Identities=14% Similarity=0.238 Sum_probs=29.6
Q ss_pred eEEEEEcccccccccccccc-hhhhhhcCCcccccEEEEceeeeecccCeEEEEEEeeeEecc
Q 003281 26 RFRMVLSDGSRSQQGMLATQ-RNELVTSGLLQIGSVVRLTKFTCNVIQNRMIVIVMDLDVIID 87 (834)
Q Consensus 26 Ryrl~lSDG~~~~~~mLatq-ln~lv~~g~l~~gsiv~l~~~~~~~v~~r~iiii~~lev~~~ 87 (834)
---|.+|||+|++.|++.-+ +|-+-..- ++|...-+++ ||||+.+..|...
T Consensus 52 ~A~llvSDgthsvrclvTrEA~~~sdwEE----------k~Fgfr~~eg-rlllLqd~~V~vq 103 (161)
T 2i46_A 52 GATLLVSDGTHSVRCLVTREALDTSDWEE----------KEFGFRGTEG-RLLLLQDCGVHVQ 103 (161)
T ss_dssp CEEEEEECSSCEEEEEECHHHHHTSCCTT----------SCSSCTTCTT-EEEEEEEEEEEEE
T ss_pred eeEEEEcCCceEEEEEecHHHhhhhhhhh----------hhcCcccccc-eEEEEecCCEEEE
Confidence 46899999999999988533 22211110 2344344443 3666666666543
No 142
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=37.24 E-value=1.6e+02 Score=25.57 Aligned_cols=72 Identities=11% Similarity=-0.025 Sum_probs=36.6
Q ss_pred eeEEEEEEEecCCeeEEccCCceeeEEEEEEe---ccCC------cEEEEEEcCCccchhhhhhhhcccCCCccEEEEEE
Q 003281 354 VDLIGVVSYISPTASLMRKNGTETQKRTLHLR---DMSG------RSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKA 424 (834)
Q Consensus 354 vDVIGvV~~V~~~~~i~~k~g~~~~kr~i~L~---D~s~------~si~vtLWg~~a~~~~~~l~~~~~~~~~~Vv~ik~ 424 (834)
|-++|.++.--++.. +.+|..+..-.|... ++.+ ..|.|++||+.|+...+ + ..+.-|.|.+
T Consensus 5 v~L~GrLt~dPelRy--TpsG~~V~~f~LA~~s~~~e~g~~r~~~f~i~vv~wGk~AE~~~~-~------~kGs~V~VeG 75 (101)
T 3en2_A 5 LQLVATLVEREVMRY--TPAGVPIVNCLLSYSGQAMEAQAARQVEFSIEALGAGKMASVLDR-I------APGTVLECVG 75 (101)
T ss_dssp EEEEEEEEEECCCEE--CTTCCEEEEEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHHTT-S------CTTCEEEEEE
T ss_pred EEEEEEECcCccEEE--CCCCCEEEEEEEEEcceEecCCCcEeeeEEEEEEEEhHHHHHHhh-c------CCCCEEEEEE
Confidence 556777777665543 235554322222211 1111 23899999999986432 2 1456676755
Q ss_pred -EEEeecCCeE
Q 003281 425 -GRVSDFNGKV 434 (834)
Q Consensus 425 -~rV~~f~G~~ 434 (834)
.+.+.|+++.
T Consensus 76 rL~trs~~s~~ 86 (101)
T 3en2_A 76 FLARKHRSSKA 86 (101)
T ss_dssp EEEECC----C
T ss_pred EEEeCcCCCCe
Confidence 4556677654
No 143
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=37.01 E-value=1.1e+02 Score=34.56 Aligned_cols=79 Identities=18% Similarity=0.252 Sum_probs=54.4
Q ss_pred CceEEEEEEEEeccceeecCCCCCcceEEEEEeeCCCCEEEEEEechH-----HHhhhhccCcCcEEEEeeeEEecCCcc
Q 003281 230 GKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAV-----ADQFYHQVEAGKIYLVSRGSLKPAQKN 304 (834)
Q Consensus 230 ~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De~g~~I~at~f~~~-----~d~f~~~l~eG~vy~is~~~V~~a~~~ 304 (834)
...+|.+||.++ |.. |++.-++|.|. +|.|++++-.+. .++....|..|+++.+.+.-++...
T Consensus 65 ~~V~v~Gwv~~~---R~~------gk~~F~~LrD~-sg~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~-- 132 (504)
T 1e1o_A 65 IEVSVAGRMMTR---RIM------GKASFVTLQDV-GGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQT-- 132 (504)
T ss_dssp CEEEEEEEEEEE---EEE------TTEEEEEEEET-TEEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEECTT--
T ss_pred CEEEEEEEEEEE---ecC------CCcEEEEEEEC-CeeEEEEEECCcCCHHHHHHHHhcCCCCCEEEEEEEEEecCC--
Confidence 468999999763 443 67888889997 579999996542 2213367999999999986554321
Q ss_pred cccCCCeEEEEEccCccEEEe
Q 003281 305 FNHLHNDLEIFLDMTSMVQLC 325 (834)
Q Consensus 305 ~~~~~~~yeI~f~~~T~I~~~ 325 (834)
..+||..+.-..+.++
T Consensus 133 -----ge~ei~~~~i~vl~~a 148 (504)
T 1e1o_A 133 -----GELSIHCTELRLLTKA 148 (504)
T ss_dssp -----CCEEEEEEEEEEEECC
T ss_pred -----ceEEEEEEEEEEeccc
Confidence 3688887654444443
No 144
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=34.75 E-value=1.5e+02 Score=33.35 Aligned_cols=79 Identities=18% Similarity=0.239 Sum_probs=54.1
Q ss_pred CceEEEEEEEEeccceeecCCCCCcceEEEEEeeCCCCEEEEEEechHH-H---hhhhccCcCcEEEEeeeEEecCCccc
Q 003281 230 GKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVA-D---QFYHQVEAGKIYLVSRGSLKPAQKNF 305 (834)
Q Consensus 230 ~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De~g~~I~at~f~~~~-d---~f~~~l~eG~vy~is~~~V~~a~~~~ 305 (834)
...+|.+||.++ |.. |++.-++|.|. +|.|++++-.+.+ + +....|..|+++.+.+.-++...
T Consensus 57 ~~V~v~Gwv~~~---R~~------gk~~F~~LrD~-sg~iQvv~~~~~~~~~~~~~~~~l~~g~~v~V~G~v~~~~~--- 123 (493)
T 3a74_A 57 IEVAVAGRIMTK---RGM------GKAGFAHIQDV-TGQIQIYVRQDDVGEQQYELFKISDLGDIVGVRGTMFKTKV--- 123 (493)
T ss_dssp CEEEEEEEEEEE---EEE------TTEEEEEEEET-TEEEEEEEEHHHHHHHHHHHHHHCCTTCEEEEEEEEEECTT---
T ss_pred CEEEEEEEEEEE---ecC------CCcEEEEEEEC-CEeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEeCCC---
Confidence 468999999763 443 67888889997 5799999965432 1 12256999999999986554321
Q ss_pred ccCCCeEEEEEccCccEEEe
Q 003281 306 NHLHNDLEIFLDMTSMVQLC 325 (834)
Q Consensus 306 ~~~~~~yeI~f~~~T~I~~~ 325 (834)
..+||..+.-..+.++
T Consensus 124 ----ge~ei~~~~i~vl~~~ 139 (493)
T 3a74_A 124 ----GELSIKVSSYEFLTKA 139 (493)
T ss_dssp ----CCEEEEEEEEEEEECC
T ss_pred ----CcEEEEEEEEEEcccc
Confidence 3688888654444443
No 145
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=33.54 E-value=1e+02 Score=28.07 Aligned_cols=35 Identities=9% Similarity=0.059 Sum_probs=22.8
Q ss_pred EEEEEEcCCccchhhhhhhhcccCCCccEEEEEE-EEEeecC
Q 003281 391 SVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKA-GRVSDFN 431 (834)
Q Consensus 391 si~vtLWg~~a~~~~~~l~~~~~~~~~~Vv~ik~-~rV~~f~ 431 (834)
-+.|++||+.|+...+.|. .+..|.|.+ .+...|.
T Consensus 50 ~~~v~~wg~~Ae~~~~~l~------KG~~V~V~G~L~~~~~~ 85 (134)
T 2vw9_A 50 FIDARLFGRTAEIANQYLS------KGSSVLIEGRLTYESWM 85 (134)
T ss_dssp EEEEEEEHHHHHHHHHHCC------TTCEEEEEEEEEEEEEE
T ss_pred EEEEEEEcHHHHHHHHhCC------CCCEEEEEEEEEeeeEE
Confidence 5999999999976544432 345555544 5666664
No 146
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=32.25 E-value=13 Score=32.46 Aligned_cols=41 Identities=39% Similarity=0.771 Sum_probs=31.0
Q ss_pred ccccccCccC--------ccCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCC---ccCCCCCCC
Q 003281 742 QSCSSCGAVG--------HSSMN------CPSIMSGPGQSSGGGYANSFSSGAGIATSSECYKCHKTG---HWARDCPSL 804 (834)
Q Consensus 742 ~~C~~Cg~~G--------H~a~~------Cp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cy~Cg~~G---H~ardCp~~ 804 (834)
..|-.|...| |..++ ||..+. ..|-.||..| |-.+-||..
T Consensus 37 ~~C~FCrnNGE~~~vy~SH~LKd~~G~V~CPvLR~-----------------------Y~CpiCGATGd~AHT~kYCP~~ 93 (106)
T 3alr_A 37 KFCSFCKHNGETEAVYTSHYLKNRDGDVMCPYLRQ-----------------------YKCPLCGATGAKAHTKRFCPMV 93 (106)
T ss_dssp -CCHHHHHTTCCHHHHTSBCSBCTTSCBCCTTGGG-----------------------CCCTTTCCCGGGCCCGGGCTTC
T ss_pred CEeECCCCCCcccCccccceeECCCCCCcCCCccc-----------------------ccCCCCCCcCCcccceecCCCC
Confidence 3677776554 88887 777664 4799999999 888899986
Q ss_pred C
Q 003281 805 N 805 (834)
Q Consensus 805 ~ 805 (834)
.
T Consensus 94 ~ 94 (106)
T 3alr_A 94 D 94 (106)
T ss_dssp G
T ss_pred C
Confidence 5
No 147
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=31.75 E-value=1.3e+02 Score=26.13 Aligned_cols=72 Identities=11% Similarity=0.103 Sum_probs=40.5
Q ss_pred eeeEEEEEEEecCCeeEEccCCceeeEEEEEE---eccCC------cEEEEEEcCCccchhhhhhhhcccCCCccEEEEE
Q 003281 353 VVDLIGVVSYISPTASLMRKNGTETQKRTLHL---RDMSG------RSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVK 423 (834)
Q Consensus 353 ~vDVIGvV~~V~~~~~i~~k~g~~~~kr~i~L---~D~s~------~si~vtLWg~~a~~~~~~l~~~~~~~~~~Vv~ik 423 (834)
-|-++|.++.--++.. +.+|..+..-.|-. .+++| ..++|++||+.|+ .. ++. .+.-|.+.
T Consensus 9 kv~LiG~L~~dPelRy--tp~G~~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae-~~-~l~------KG~~v~ve 78 (103)
T 3k8a_A 9 LVSLAALIEKAFPIRY--TPAGIPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAE-EW-QYR------QGDCATVE 78 (103)
T ss_dssp EEEEEEEEEEECCCEE--CTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHH-HS-TTC------TTCEEEEE
T ss_pred EEEEEEEECCCCceEE--CCCCCEEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhh-hh-ccC------CCCEEEEE
Confidence 4677788877655543 23455432222211 11222 2389999999998 32 232 45566665
Q ss_pred E-EEEeecCCeE
Q 003281 424 A-GRVSDFNGKV 434 (834)
Q Consensus 424 ~-~rV~~f~G~~ 434 (834)
+ .+.+.|+++.
T Consensus 79 GrL~~rs~~~~~ 90 (103)
T 3k8a_A 79 GFLAQKSRRSLM 90 (103)
T ss_dssp EEEEESSSSCCC
T ss_pred EEEEECccCCcc
Confidence 5 5667888763
No 148
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=31.57 E-value=2.6e+02 Score=24.79 Aligned_cols=36 Identities=8% Similarity=0.006 Sum_probs=23.2
Q ss_pred EEEEEEcC-CccchhhhhhhhcccCCCccEEEEE-EEEEeecCC
Q 003281 391 SVELTLWG-NFCNDDGLRLQHMCDSGVFPILAVK-AGRVSDFNG 432 (834)
Q Consensus 391 si~vtLWg-~~a~~~~~~l~~~~~~~~~~Vv~ik-~~rV~~f~G 432 (834)
-++|++|| ..|+...+.+. .+..|.+. ..+...|..
T Consensus 55 ~~~v~~wg~~~Ae~~~~~l~------KG~~V~V~G~L~~~~~~d 92 (124)
T 3ulp_A 55 WHRIVVYDQNIVDLIDKYLR------KGRRVYVQGSLHTRKWHT 92 (124)
T ss_dssp EEEEEECCHHHHHHHHHHCC------TTCEEEEEEEEEEEEECC
T ss_pred EEEEEEEEchHHHHHHhhcC------CCCEEEEEEEEEeEEEeC
Confidence 49999999 78876544432 34555554 456667754
No 149
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=30.03 E-value=2.1e+02 Score=26.24 Aligned_cols=68 Identities=13% Similarity=0.070 Sum_probs=36.6
Q ss_pred eeeEEEEEEEecCCeeEEccCCceeeEEEEEE---eccCC------cEEEEEEcCCccchhhhhhhhcccCCCccEEEEE
Q 003281 353 VVDLIGVVSYISPTASLMRKNGTETQKRTLHL---RDMSG------RSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVK 423 (834)
Q Consensus 353 ~vDVIGvV~~V~~~~~i~~k~g~~~~kr~i~L---~D~s~------~si~vtLWg~~a~~~~~~l~~~~~~~~~~Vv~ik 423 (834)
.|-+||.|+.--++.. +.+|..+..-.|-. .++.| ..|+|++||+.|+...+++. .+.-|.|.
T Consensus 21 kViLiGrL~~DPElRy--TpsG~~Va~ftLA~~~~~~~~G~~~~~~~~i~vv~wGk~AE~~~~yl~------KGs~V~Ve 92 (134)
T 1v1q_A 21 RLVLSGTVCRAPLRKV--SPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSIT------VGSRITVQ 92 (134)
T ss_dssp EEEEEEEEEEEEEEEE--CTTCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCC------TTCEEEEE
T ss_pred EEEEEEEECcCCceEE--CCCCCEEEEEEEEEeCcCcCCCCEecceEEEEEEEEhHHHHHHHHhcC------CCCEEEEE
Confidence 4667777776544432 23555432222211 12223 13899999999987655442 35566665
Q ss_pred E-EEEe
Q 003281 424 A-GRVS 428 (834)
Q Consensus 424 ~-~rV~ 428 (834)
+ .+..
T Consensus 93 GrL~tr 98 (134)
T 1v1q_A 93 GFISCH 98 (134)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 4 3443
No 150
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=28.74 E-value=1.9e+02 Score=24.96 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=34.2
Q ss_pred eeEEEEEEEecCCeeEEccCCceeeEEEEEEe---ccCCcE-------EEEEEcCCccchhhhhhhhcccCCCccEEEEE
Q 003281 354 VDLIGVVSYISPTASLMRKNGTETQKRTLHLR---DMSGRS-------VELTLWGNFCNDDGLRLQHMCDSGVFPILAVK 423 (834)
Q Consensus 354 vDVIGvV~~V~~~~~i~~k~g~~~~kr~i~L~---D~s~~s-------i~vtLWg~~a~~~~~~l~~~~~~~~~~Vv~ik 423 (834)
|-++|.|..--++.. +.+|..+..-.|-.. ++++ - ++|++||+.|+...+++. .+.-|.+.
T Consensus 5 v~L~G~l~~dpelR~--t~~G~~v~~f~lA~~~~~~~~~-~~r~~~~~~~vv~~g~~Ae~~~~~l~------KG~~V~V~ 75 (104)
T 1txy_A 5 LVLSGTVCRAPLRKV--SPSGIPHCQFVLEHRSVQEEAG-FHRQAWCQMPVIVSGHENQAITHSIT------VGSRITVQ 75 (104)
T ss_dssp EEEEEEEEEEEEEEE--CTTSCEEEEEEEEEEEEEEETT-EEEEEEEEEEEEEESSTTHHHHTTCC------TTCEEEEE
T ss_pred EEEEEEECCCceEEE--CCCCCEEEEEEEEEeCccccCC-ceeceeEEEEEEEEhHHHHHHHhhCC------CCCEEEEE
Confidence 557777766544432 235654333222221 1222 4 999999999987554432 45566665
Q ss_pred E
Q 003281 424 A 424 (834)
Q Consensus 424 ~ 424 (834)
+
T Consensus 76 G 76 (104)
T 1txy_A 76 G 76 (104)
T ss_dssp E
T ss_pred E
Confidence 4
No 151
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=28.23 E-value=14 Score=39.98 Aligned_cols=6 Identities=17% Similarity=0.390 Sum_probs=0.0
Q ss_pred cccccC
Q 003281 743 SCSSCG 748 (834)
Q Consensus 743 ~C~~Cg 748 (834)
+||.|.
T Consensus 316 ~~~~~~ 321 (358)
T 2pk2_A 316 PNYHCQ 321 (358)
T ss_dssp ------
T ss_pred cceecH
Confidence 588873
No 152
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=27.82 E-value=1.7e+02 Score=25.98 Aligned_cols=70 Identities=10% Similarity=-0.008 Sum_probs=36.5
Q ss_pred eeEEEEEEEecCCeeEEccCCceeeEEEEEEe---ccCC------cEEEEEEcCCccchhhhhhhhcccCCCccEEEEEE
Q 003281 354 VDLIGVVSYISPTASLMRKNGTETQKRTLHLR---DMSG------RSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKA 424 (834)
Q Consensus 354 vDVIGvV~~V~~~~~i~~k~g~~~~kr~i~L~---D~s~------~si~vtLWg~~a~~~~~~l~~~~~~~~~~Vv~ik~ 424 (834)
|-++|.|+.--++.. +.+|..+..-.|-.. ++.+ ..|.|++||+.|+.. +++. .+.-|.|.+
T Consensus 4 viL~GrL~~dPelRy--TpsG~~V~~f~LA~~~~~~~~g~~r~~~~~i~vv~~Gk~AE~~-~~l~------kGs~V~VeG 74 (115)
T 3fhw_A 4 LELSARVLECGAMRH--TPAGLPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLL-ADTP------LGTEMQVQG 74 (115)
T ss_dssp EEEEEEEEEECCCEE--CTTSCEEEEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHH-TTCC------TTCEEEEEE
T ss_pred EEEEEEECcCcceEE--CCCCCEEEEEEEEEcceeecCCCeeeeeEEEEEEEEhHHHHhh-hccC------CCCEEEEEE
Confidence 456777777655542 235554322222211 1122 128899999999864 4432 456666654
Q ss_pred -EEEeecCC
Q 003281 425 -GRVSDFNG 432 (834)
Q Consensus 425 -~rV~~f~G 432 (834)
.+...-+|
T Consensus 75 rL~trs~~G 83 (115)
T 3fhw_A 75 FLAPARKDS 83 (115)
T ss_dssp EEEESSTTC
T ss_pred EEEECCCCC
Confidence 33333344
No 153
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=26.52 E-value=35 Score=40.99 Aligned_cols=74 Identities=18% Similarity=0.248 Sum_probs=52.0
Q ss_pred CCceeccccCCCCCceEEEEEEEEeccceeecCCCCCcceEEEEEeeCCCCEEEEEEechHHHhhhhccCc--CcEEEEe
Q 003281 217 SRIIPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEA--GKIYLVS 294 (834)
Q Consensus 217 ~~~~pI~~L~p~~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De~g~~I~at~f~~~~d~f~~~l~e--G~vy~is 294 (834)
+.+++|.+|.+. ..-+|.++|......+ + +.++.+.+.+.|++ |.|.+++|+.. -....|++ |+.|.++
T Consensus 154 ~~~~~~~~~~~~-~~~~~~~~v~~~~~~~-~----~~~~~~~~~~~d~~-~~~~~~~f~~~--~~~~~~~~~~g~~~~~~ 224 (780)
T 1gm5_A 154 RKIFKLNDLLPG-EKVTTQGKIVSVETKK-F----QNMNILTAVLSDGL-VHVPLKWFNQD--YLQTYLKQLTGKEVFVT 224 (780)
T ss_dssp SCCCCSSCCCSS-CCCEEEECCCCCEEEE-C----SSCEEEEEEECCSS-CCEEEEECSCC--TTHHHHHTTCSSCEEEE
T ss_pred CcCCcHHHcCCC-CEEEEEEEEEEEEeec-C----CCCeEEEEEEEECC-ceEEEEEECcH--HHHhhCccCCCCEEEEE
Confidence 356789998875 4788999997643221 2 22467888899975 68999999942 23456788 9999987
Q ss_pred eeEEec
Q 003281 295 RGSLKP 300 (834)
Q Consensus 295 ~~~V~~ 300 (834)
+ +|+.
T Consensus 225 G-~~~~ 229 (780)
T 1gm5_A 225 G-TVKS 229 (780)
T ss_dssp E-EECS
T ss_pred E-EEEE
Confidence 5 4443
No 154
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=26.15 E-value=2.4e+02 Score=26.20 Aligned_cols=70 Identities=17% Similarity=0.165 Sum_probs=39.5
Q ss_pred eeeEEEEEEEecCCeeEEccCCceeeEEEEEEe----cc-------CCcEEEEEEcCCc-cchhhhhhhhcccCCCccEE
Q 003281 353 VVDLIGVVSYISPTASLMRKNGTETQKRTLHLR----DM-------SGRSVELTLWGNF-CNDDGLRLQHMCDSGVFPIL 420 (834)
Q Consensus 353 ~vDVIGvV~~V~~~~~i~~k~g~~~~kr~i~L~----D~-------s~~si~vtLWg~~-a~~~~~~l~~~~~~~~~~Vv 420 (834)
.|-+||.|..--+ .. + +|+.+.+-.|-.- |. .-.-++|++|++. |+...++|. .+.-|
T Consensus 8 kV~LiGrLg~DPe--r~-t-~G~~va~FslAv~~~~~~~~Ge~~~~~t~w~~vv~wgk~lAe~~~~yl~------KG~~V 77 (148)
T 3k7u_C 8 SVTLVGVVHDIQS--GF-V-YEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVK------EGNVV 77 (148)
T ss_dssp CEEEEEEEEEEEE--EE-S-SSSEEEEEEEEEECC-----------CEEEEEEEEESHHHHHHHHHHCC------TTCEE
T ss_pred EEEEEEEeccCCE--ee-e-CCcEEEEEEEEECCceecCCCCEEccccEEEEEEEECcHHHHHHHhhCC------CCCEE
Confidence 4678888876433 22 2 5554433333222 11 1136999999997 876555442 34455
Q ss_pred EE-EEEEEeecCC
Q 003281 421 AV-KAGRVSDFNG 432 (834)
Q Consensus 421 ~i-k~~rV~~f~G 432 (834)
.| -..+...|..
T Consensus 78 ~VeGrL~~r~~~d 90 (148)
T 3k7u_C 78 CVNGRLRLSPQLE 90 (148)
T ss_dssp EEEEEEEECCCSC
T ss_pred EEEEEEEeeeeEC
Confidence 55 4467777854
No 155
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=26.14 E-value=1.3e+02 Score=28.57 Aligned_cols=35 Identities=11% Similarity=0.143 Sum_probs=24.0
Q ss_pred EEEEEEcCCccchhhhhhhhcccCCCccEEEEE-EEEEeecC
Q 003281 391 SVELTLWGNFCNDDGLRLQHMCDSGVFPILAVK-AGRVSDFN 431 (834)
Q Consensus 391 si~vtLWg~~a~~~~~~l~~~~~~~~~~Vv~ik-~~rV~~f~ 431 (834)
-|+|++|++.|+...+.|. .+..|.|. ..+...|.
T Consensus 54 ~~~v~~wg~~Ae~~~~~l~------KG~~V~VeGrL~~~~~~ 89 (168)
T 3afp_A 54 FLRCNIWREAAENVAESLT------RGARVIVTGRLKQRSFE 89 (168)
T ss_dssp EEEEEEEHHHHHHHHHHCC------TTCEEEEEEEEEEEEEC
T ss_pred EEEEEEehHHHHHHHHhCC------CCCEEEEEEEEEeeeEE
Confidence 6999999999987655442 34555554 46777775
No 156
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=25.94 E-value=64 Score=27.14 Aligned_cols=30 Identities=23% Similarity=0.451 Sum_probs=24.8
Q ss_pred EEEEeCCCeEEEEEehHHHHHHhCCCHHHHHh
Q 003281 564 FQIQDHTGLTWVTAFQECAEEIMGMSAKDLYS 595 (834)
Q Consensus 564 ~~i~D~Tg~~~~~~F~e~ae~llG~sA~el~~ 595 (834)
+.+.|..|. ++.++..+++|+|.+++|+..
T Consensus 6 i~~~d~~g~--i~~~N~a~~~l~G~~~~el~G 35 (119)
T 2vv6_A 6 MIVIDGHGI--IQLFSTAAERLFGWSELEAIG 35 (119)
T ss_dssp EEEEETTSB--EEEECHHHHHHHCCCHHHHTT
T ss_pred EEEECCCCe--EEEEhHHHHHHhCCCHHHHcC
Confidence 456788875 567899999999999999864
No 157
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=25.49 E-value=18 Score=26.11 Aligned_cols=18 Identities=39% Similarity=0.936 Sum_probs=16.1
Q ss_pred cCcccCCCCccCCCCCCC
Q 003281 787 ECYKCHKTGHWARDCPSL 804 (834)
Q Consensus 787 ~Cy~Cg~~GH~ardCp~~ 804 (834)
-|-.|.-.|||+.+|+..
T Consensus 22 YCd~CEvFGH~t~~Cndd 39 (42)
T 2pzo_E 22 YCEICEMFGHWATNCNDD 39 (42)
T ss_dssp EETTTTEESSCGGGCCTT
T ss_pred ccccccccCcccccCCcc
Confidence 599999999999999754
No 158
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=25.25 E-value=1.6e+02 Score=32.11 Aligned_cols=68 Identities=18% Similarity=0.338 Sum_probs=48.7
Q ss_pred eeccccCCCCCceEEEEEEEEeccceeecCCCCCcceEEEEEeeCCCCEEEEEEec--hHHHhhhhccCcCcEEEEeee
Q 003281 220 IPIAALNPYMGKWTIKARVTAKGELRHYNNQRGDGKVFHFDLLDSDGGEIRVTCFN--AVADQFYHQVEAGKIYLVSRG 296 (834)
Q Consensus 220 ~pI~~L~p~~~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~De~g~~I~at~f~--~~~d~f~~~l~eG~vy~is~~ 296 (834)
.+|.++.||++ ..|++.|..+- +.- +| |. .-|.|.|+ +++|++.+|. ....+.-..|..|+.+.+...
T Consensus 276 ~~i~~~~~~~~-~~v~G~V~~~P--~~~---~G-GH-V~f~l~d~-~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~ 345 (402)
T 3au7_A 276 EEVHRLENYRS-YRLRGRVTLEP--YDI---EG-GH-VFFEIDTK-FGSVKCAAFEPTKQFRNVIRLLRKGDVVEVYGS 345 (402)
T ss_dssp GGCSSCCTTCE-EEEEEEEEEEE--EEE---TT-TE-EEEEEEET-TEEEEEEECGGGTTHHHHHTTCCTTCEEEEEEE
T ss_pred ccccccccCce-EEEEEEEecCc--Eec---cC-ce-EEEEEEcC-CCEEEEEEEccchHHHHHHhcCCCCCEEEEEEe
Confidence 34899999866 66888887651 111 11 44 44667786 7899999998 446666677899999998775
No 159
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=24.60 E-value=45 Score=24.80 Aligned_cols=27 Identities=22% Similarity=0.768 Sum_probs=20.6
Q ss_pred CCCCCcCCCCcCc-cc-ccCCCCceecCCCCCccc
Q 003281 522 ACPIMIGDRPCNK-KV-MNNGDGRWHCDRCDQSVV 554 (834)
Q Consensus 522 aC~~~~~~~~C~K-Kv-~~~~dg~~~CekC~~~~~ 554 (834)
+|| .|+. .+ .+...|.+.|+.|+..++
T Consensus 7 ~CP------~C~~~~l~~d~~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 7 VCP------ACESAELIYDPERGEIVCAKCGYVIE 35 (50)
T ss_dssp SCT------TTSCCCEEEETTTTEEEESSSCCBCC
T ss_pred eCc------CCCCcceEEcCCCCeEECcccCCccc
Confidence 699 6987 65 344558899999998664
No 160
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=24.47 E-value=1.6e+02 Score=28.75 Aligned_cols=35 Identities=3% Similarity=0.023 Sum_probs=21.8
Q ss_pred EEEEEEcCC-ccchhhhhhhhcccCCCccEEEEE-EEEEeecC
Q 003281 391 SVELTLWGN-FCNDDGLRLQHMCDSGVFPILAVK-AGRVSDFN 431 (834)
Q Consensus 391 si~vtLWg~-~a~~~~~~l~~~~~~~~~~Vv~ik-~~rV~~f~ 431 (834)
-++|++|++ .|+...+.|. .+..|.|. ..+...|.
T Consensus 75 wi~Vvawgk~lAe~~~~yL~------KGs~V~VeGrL~trswe 111 (193)
T 3pgz_A 75 WHNIVIFNENLVKVVEQYLK------KGSKIYIEGQLQTRKWQ 111 (193)
T ss_dssp EEEEEECCHHHHHHHHHHCC------TTCEEEEEEEEEEEEEE
T ss_pred EEEEEEECHHHHHHHHhhcC------CCCEEEEEEEEEEEEeE
Confidence 489999997 7765444332 34555554 46666674
No 161
>2oq0_A Gamma-interferon-inducible protein IFI-16; OB folds, beta-barrels, structural genomics, PSI-2, protein initiative; 2.00A {Homo sapiens} SCOP: b.40.16.1 b.40.16.1
Probab=24.38 E-value=5e+02 Score=25.31 Aligned_cols=174 Identities=13% Similarity=0.065 Sum_probs=109.2
Q ss_pred EEEEEEeccceeecCCC-CCcceEEEEEeeCCCCEEEEEEechHHHhhhhccCcCcEEEEeeeEEecCCcccccCCCeEE
Q 003281 235 KARVTAKGELRHYNNQR-GDGKVFHFDLLDSDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLKPAQKNFNHLHNDLE 313 (834)
Q Consensus 235 ~aRV~~Ks~lr~~~n~~-g~Gk~f~~~L~De~g~~I~at~f~~~~d~f~~~l~eG~vy~is~~~V~~a~~~~~~~~~~ye 313 (834)
.|-|+.-.+.+.|..+. +.-.+|+-+++-+ .---++.+|+.. +.+.+...+++.||++.= +.--
T Consensus 19 ~VmVLkat~pF~ye~~E~~k~~MFHATVATe-tqfF~VKVfn~~---LkeKF~~k~iI~ISdY~~-----------~~g~ 83 (206)
T 2oq0_A 19 IVKVLSTTKPFEYETPEMEKKIMFHATVATQ-TQFFHVKVLNTS---LKEKFNGKKIIIISDYLE-----------YDSL 83 (206)
T ss_dssp EEEEEEECCCEEEECCC--EEEEEEEEEECS-SCEEEEEECCGG---GGGGGSSSSEEEEESBEE-----------ETTE
T ss_pred EEEEEecccceEEechhcccceeEEEEEeec-ceeEEEEEeech---hhhhcccCceEEEEeecc-----------ccce
Confidence 35666667778887654 2234999999987 578999999975 555889999999998642 2335
Q ss_pred EEEccCccEEEecC-CCCCCcccc----ccccccccccccCCCceeeEEEEEEEecCCeeEEccCCceeeEEEEEEeccC
Q 003281 314 IFLDMTSMVQLCYE-DDASIPRQQ----FHFRPINDVEGMENNSVVDLIGVVSYISPTASLMRKNGTETQKRTLHLRDMS 388 (834)
Q Consensus 314 I~f~~~T~I~~~~d-~~~~iP~~~----~~f~~i~dI~~~~~~~~vDVIGvV~~V~~~~~i~~k~g~~~~kr~i~L~D~s 388 (834)
|.+++.+.|.+... ....||... -.-.+|++|.....+.+|+=+=.|.... . .+ ......|.|++
T Consensus 84 lEv~~~ssVse~~~~q~~evp~~ii~~A~~TpKI~~L~~qa~Gt~V~GlF~v~kk~------v--~~--~~~~yeI~D~t 153 (206)
T 2oq0_A 84 LEVNEESTVSEAGPNQTFEVPNKIINRAKETLKIDILHKQASGNIVYGVFMLHKKT------V--NQ--KTTIYEIQDDR 153 (206)
T ss_dssp EEECTTCEEEECCGGGCCCCCHHHHHHHTCCCCHHHHTTSCTTCEEEEEEEEEEEE------E--CS--SEEEEEEEETT
T ss_pred eeeeccceEEeccCCcceeccHHHHhhcccCccchhhhccCCccEEceEEEEEEEe------e--cc--ceEEEEEccCC
Confidence 66677778877532 234455422 2335667776666677665333333221 0 11 23456788999
Q ss_pred CcEEEEEEcCCccchhhhhhhhcccCCCccEEEEEEEEEeecCCe-EEEeecceEE
Q 003281 389 GRSVELTLWGNFCNDDGLRLQHMCDSGVFPILAVKAGRVSDFNGK-VVGTISTTQL 443 (834)
Q Consensus 389 ~~si~vtLWg~~a~~~~~~l~~~~~~~~~~Vv~ik~~rV~~f~G~-~Ls~~~~S~i 443 (834)
| .++|...|..... ...+++.+-+.-..++.-..+ .|-+...|-|
T Consensus 154 G-~MeVvv~G~~~~i---------~CeeGdkLrL~cF~L~~~~~~~~L~S~~hSfi 199 (206)
T 2oq0_A 154 G-KMDVVGTGQCHNI---------PCEEGDKLQLFCFRLRKKNQMSKLISEMHSFI 199 (206)
T ss_dssp E-EEEEEEEGGGSSC---------CCCTTCEEEEEEEEEEEETTEEEEECCTTCEE
T ss_pred C-cEEEEEeCccccc---------ccCCCCEEEEEEEEeeccCCcceEEEecceeE
Confidence 9 7999988876432 233567777766666654443 5655544544
No 162
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=24.32 E-value=29 Score=28.14 Aligned_cols=28 Identities=14% Similarity=0.288 Sum_probs=21.0
Q ss_pred eeCCCCCcCCCCcCcccc-cCCCCceecCCCCCcc
Q 003281 520 YTACPIMIGDRPCNKKVM-NNGDGRWHCDRCDQSV 553 (834)
Q Consensus 520 Y~aC~~~~~~~~C~KKv~-~~~dg~~~CekC~~~~ 553 (834)
..+|| .|+..+. +...+...|..|+..+
T Consensus 8 iL~CP------~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 8 ILACP------ICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp TCCCT------TTCCCCEECTTSSEEEETTTTEEE
T ss_pred heeCC------CCCCcCeEeCCCCEEEcCCCCcEe
Confidence 45899 6999874 3345789999998754
No 163
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=24.04 E-value=98 Score=27.26 Aligned_cols=64 Identities=22% Similarity=0.266 Sum_probs=48.6
Q ss_pred CceEEEEEEEEeccceeecCCCCCcceEEEEEe-e---CCCCEEEEEEechHHHhhhhccCcCcEEEEeeeEEe
Q 003281 230 GKWTIKARVTAKGELRHYNNQRGDGKVFHFDLL-D---SDGGEIRVTCFNAVADQFYHQVEAGKIYLVSRGSLK 299 (834)
Q Consensus 230 ~~w~I~aRV~~Ks~lr~~~n~~g~Gk~f~~~L~-D---e~g~~I~at~f~~~~d~f~~~l~eG~vy~is~~~V~ 299 (834)
++..|.+|+++--++|+..+ |+ .+.+|.|+ + ++-+-|.+++|+.+++... +..|+-+.+.+ +++
T Consensus 12 N~V~LiGrl~~dpelr~t~~--G~-~v~~f~lAV~R~~~~~Dfi~ivvw~klAe~~~--~~kG~~v~v~G-~lr 79 (107)
T 4gs3_A 12 NTVTLVGKVFTPLEFSHELY--GE-KFFNFILEVPRLSETKDYLPITISNRLFEGMN--LEVGTRVKIEG-QLR 79 (107)
T ss_dssp SCEEEEEEECSCCEEEEEET--TE-EEEEEEEEEECTTSCEEEEEEEEEGGGSTTCC--CCTTCEEEEEE-EEE
T ss_pred CEEEEEEEECCCceEEEecC--Cc-EEEEEEEEeCCCCCCCcEEEEEEEhHHhhHHh--hcCCCEEEEEE-EEE
Confidence 68899999999999998753 32 46777774 1 2358999999999988653 45899998887 554
No 164
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=23.99 E-value=2.6e+02 Score=26.58 Aligned_cols=36 Identities=6% Similarity=0.002 Sum_probs=22.9
Q ss_pred EEEEEEcCC-ccchhhhhhhhcccCCCccEEEEE-EEEEeecCC
Q 003281 391 SVELTLWGN-FCNDDGLRLQHMCDSGVFPILAVK-AGRVSDFNG 432 (834)
Q Consensus 391 si~vtLWg~-~a~~~~~~l~~~~~~~~~~Vv~ik-~~rV~~f~G 432 (834)
-++|++||+ .|+...+.|. .+..|.|. ..+...|..
T Consensus 72 ~i~vv~wg~~lAe~~~~~l~------KG~~V~VeGrL~~r~~~d 109 (169)
T 3lgj_A 72 WHSVVVFNPHFAKIALQYLH------KGSKVYIEGKLQTRKWQD 109 (169)
T ss_dssp EEEEEECCHHHHHHHHHHCC------TTCEEEEEEEEEEECC--
T ss_pred EEEEEEeCHHHHHHHHHhCC------CCCEEEEEEEEEEEEEEC
Confidence 589999999 8876554442 34555554 467777753
No 165
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=23.94 E-value=30 Score=27.99 Aligned_cols=28 Identities=7% Similarity=0.219 Sum_probs=21.0
Q ss_pred eeCCCCCcCCCCcCcccc-cCCCCceecCCCCCcc
Q 003281 520 YTACPIMIGDRPCNKKVM-NNGDGRWHCDRCDQSV 553 (834)
Q Consensus 520 Y~aC~~~~~~~~C~KKv~-~~~dg~~~CekC~~~~ 553 (834)
..+|| .|+..+. ....+...|..|+..+
T Consensus 8 iL~CP------~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 8 ILVCP------VTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCBCS------SSCCBCEEETTTTEEEETTTTEEE
T ss_pred heECC------CCCCcCeEeCCCCEEEcCCCCcEe
Confidence 45899 6999874 3345789999998654
No 166
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=23.86 E-value=29 Score=28.05 Aligned_cols=29 Identities=14% Similarity=0.398 Sum_probs=21.7
Q ss_pred eeeCCCCCcCCCCcCcccc-cCCCCceecCCCCCcc
Q 003281 519 CYTACPIMIGDRPCNKKVM-NNGDGRWHCDRCDQSV 553 (834)
Q Consensus 519 ~Y~aC~~~~~~~~C~KKv~-~~~dg~~~CekC~~~~ 553 (834)
-..+|| .|+..+. ....+...|..|+..+
T Consensus 7 ~iL~CP------~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 7 EILVCP------LCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp EECBCT------TTCCBCEEETTTTEEEETTTTEEE
T ss_pred hheECC------CCCCcCeEeCCCCEEEcCCCCcEe
Confidence 456899 6999874 3345789999998654
No 167
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=23.72 E-value=29 Score=28.21 Aligned_cols=28 Identities=14% Similarity=0.464 Sum_probs=21.2
Q ss_pred eeCCCCCcCCCCcCcccc-cCCCCceecCCCCCcc
Q 003281 520 YTACPIMIGDRPCNKKVM-NNGDGRWHCDRCDQSV 553 (834)
Q Consensus 520 Y~aC~~~~~~~~C~KKv~-~~~dg~~~CekC~~~~ 553 (834)
..+|| .|+..+. +...|...|..|+..+
T Consensus 8 iL~CP------~ck~~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 8 ILVCP------VCKGRLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CCBCT------TTCCBEEEETTTTEEEETTTTEEE
T ss_pred heECC------CCCCcCEEeCCCCEEEcCCCCcee
Confidence 46899 6999874 3345789999998765
No 168
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=23.10 E-value=1.9e+02 Score=26.61 Aligned_cols=35 Identities=11% Similarity=0.130 Sum_probs=23.4
Q ss_pred EEEEEEcCCccchhhhhhhhcccCCCccEEEEE-EEEEeecC
Q 003281 391 SVELTLWGNFCNDDGLRLQHMCDSGVFPILAVK-AGRVSDFN 431 (834)
Q Consensus 391 si~vtLWg~~a~~~~~~l~~~~~~~~~~Vv~ik-~~rV~~f~ 431 (834)
-+.|++|++.|+...+.|. .+..|.|. ..+...|.
T Consensus 54 ~~~v~~wg~~Ae~~~~~l~------KG~~V~V~G~L~~~~~~ 89 (145)
T 1qvc_A 54 WHRVVLFGKLAEVASEYLR------KGSQVYIEGQLRTRKWT 89 (145)
T ss_dssp EEEEEEETHHHHHHHHHCC------TTCEEEEEEEEEEEEEC
T ss_pred EEEEEEehHHHHHHHHhcC------CCCEEEEEEEEEeeEEE
Confidence 6999999999886544432 34555554 45666775
No 169
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=21.18 E-value=47 Score=33.83 Aligned_cols=10 Identities=30% Similarity=0.803 Sum_probs=6.7
Q ss_pred cccccCccCc
Q 003281 743 SCSSCGAVGH 752 (834)
Q Consensus 743 ~C~~Cg~~GH 752 (834)
.|..|...|-
T Consensus 40 ~C~~C~G~G~ 49 (248)
T 1nlt_A 40 LCKECEGRGG 49 (248)
T ss_dssp ECTTTTTCSB
T ss_pred eCCCCcCccC
Confidence 6777776653
No 170
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=20.50 E-value=93 Score=26.62 Aligned_cols=31 Identities=13% Similarity=0.309 Sum_probs=25.1
Q ss_pred EEEEeCCCeEEEEEehHHHHHHhCCCHHHHHhh
Q 003281 564 FQIQDHTGLTWVTAFQECAEEIMGMSAKDLYSL 596 (834)
Q Consensus 564 ~~i~D~Tg~~~~~~F~e~ae~llG~sA~el~~l 596 (834)
+.+.|..|. ++.++..+++|+|.+++||...
T Consensus 29 i~~~d~~g~--i~~~N~a~~~l~Gy~~~eliG~ 59 (130)
T 1d06_A 29 TVVSATDGT--IVSFNAAAVRQFGYAEEEVIGQ 59 (130)
T ss_dssp EEEEETTSB--EEEECHHHHHHHCCCHHHHTTS
T ss_pred EEEECCCCe--EEEEcHHHHHHHCCCHHHHcCC
Confidence 456788876 4678999999999999998643
Done!