Query 003283
Match_columns 834
No_of_seqs 280 out of 676
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 20:33:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003283.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003283hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02830 UDP-sugar pyrophospho 100.0 2E-123 5E-128 1071.7 52.8 584 123-815 14-615 (615)
2 PLN02435 probable UDP-N-acetyl 100.0 9.7E-90 2.1E-94 774.7 36.7 438 135-684 21-472 (493)
3 PTZ00339 UDP-N-acetylglucosami 100.0 3.2E-81 6.9E-86 706.9 36.9 450 140-684 2-463 (482)
4 cd06424 UGGPase UGGPase cataly 100.0 1E-81 2.2E-86 678.2 27.8 308 289-623 1-315 (315)
5 PLN02474 UTP--glucose-1-phosph 100.0 3.5E-77 7.6E-82 669.5 34.2 367 283-733 74-446 (469)
6 KOG2388 UDP-N-acetylglucosamin 100.0 2E-76 4.3E-81 652.6 23.0 424 135-664 2-435 (477)
7 PF01704 UDPGP: UTP--glucose-1 100.0 8.1E-74 1.8E-78 639.4 26.5 409 223-724 2-420 (420)
8 cd04193 UDPGlcNAc_PPase UDPGlc 100.0 1.2E-71 2.5E-76 604.9 26.9 315 277-623 2-323 (323)
9 cd00897 UGPase_euk Eukaryotic 100.0 1.8E-68 3.8E-73 573.4 24.8 284 286-623 1-288 (300)
10 KOG2638 UDP-glucose pyrophosph 100.0 1.4E-64 3.1E-69 546.2 31.5 439 162-733 26-472 (498)
11 COG4284 UDP-glucose pyrophosph 100.0 1E-60 2.2E-65 529.3 27.5 414 135-663 14-435 (472)
12 cd04180 UGPase_euk_like Eukary 100.0 1.3E-56 2.8E-61 475.8 25.4 235 289-548 1-241 (266)
13 COG1207 GlmU N-acetylglucosami 98.0 0.00089 1.9E-08 75.9 22.0 187 288-549 2-189 (460)
14 PRK05293 glgC glucose-1-phosph 97.6 0.0028 6E-08 70.8 18.5 196 287-548 2-205 (380)
15 PRK14352 glmU bifunctional N-a 97.5 0.0034 7.3E-08 72.7 18.3 186 288-548 4-191 (482)
16 cd06915 NTP_transferase_WcbM_l 97.5 0.0055 1.2E-07 62.1 17.7 176 291-546 1-180 (223)
17 PRK00844 glgC glucose-1-phosph 97.5 0.0057 1.2E-07 69.4 19.4 206 285-548 2-212 (407)
18 cd02540 GT2_GlmU_N_bac N-termi 97.4 0.0052 1.1E-07 63.0 16.5 181 291-548 1-182 (229)
19 cd04197 eIF-2B_epsilon_N The N 97.4 0.0046 9.9E-08 63.8 16.0 124 291-465 3-129 (217)
20 PRK14360 glmU bifunctional N-a 97.4 0.005 1.1E-07 70.1 17.7 185 289-548 2-186 (450)
21 cd04189 G1P_TT_long G1P_TT_lon 97.4 0.0072 1.6E-07 62.5 17.1 68 290-378 2-72 (236)
22 cd04181 NTP_transferase NTP_tr 97.4 0.0083 1.8E-07 60.7 17.2 177 292-548 2-181 (217)
23 PRK14356 glmU bifunctional N-a 97.4 0.0037 8.1E-08 71.4 16.2 184 288-548 5-189 (456)
24 TIGR02092 glgD glucose-1-phosp 97.4 0.0029 6.2E-08 70.5 14.5 193 288-548 2-203 (369)
25 PRK05450 3-deoxy-manno-octulos 97.4 0.018 3.8E-07 60.2 19.5 188 288-548 2-194 (245)
26 PRK14359 glmU bifunctional N-a 97.4 0.009 1.9E-07 67.6 18.5 178 289-548 3-180 (430)
27 PRK02862 glgC glucose-1-phosph 97.3 0.011 2.4E-07 67.8 18.6 210 288-549 3-226 (429)
28 PRK15480 glucose-1-phosphate t 97.3 0.015 3.2E-07 63.7 18.7 180 288-544 3-185 (292)
29 PRK14353 glmU bifunctional N-a 97.2 0.015 3.2E-07 66.4 18.4 184 288-548 5-189 (446)
30 cd02509 GDP-M1P_Guanylyltransf 97.2 0.0051 1.1E-07 66.4 13.7 197 291-549 3-208 (274)
31 PRK14358 glmU bifunctional N-a 97.2 0.014 2.9E-07 68.0 17.9 148 287-497 6-154 (481)
32 cd06426 NTP_transferase_like_2 97.1 0.018 4E-07 58.8 16.4 173 291-546 1-176 (220)
33 PRK14355 glmU bifunctional N-a 97.1 0.018 4E-07 66.1 18.0 185 288-548 3-188 (459)
34 PLN02241 glucose-1-phosphate a 97.1 0.022 4.7E-07 65.5 18.4 216 287-548 2-231 (436)
35 PF00483 NTP_transferase: Nucl 97.1 0.0022 4.8E-08 66.5 9.4 185 292-548 3-192 (248)
36 cd02508 ADP_Glucose_PP ADP-glu 97.1 0.0074 1.6E-07 61.4 12.6 136 292-472 2-143 (200)
37 cd06422 NTP_transferase_like_1 97.1 0.026 5.7E-07 57.9 16.7 66 291-378 2-70 (221)
38 TIGR01173 glmU UDP-N-acetylglu 97.0 0.0094 2E-07 67.7 14.5 61 291-372 3-63 (451)
39 PRK00725 glgC glucose-1-phosph 97.0 0.028 6.1E-07 64.4 18.1 202 287-548 14-224 (425)
40 TIGR01207 rmlA glucose-1-phosp 97.0 0.024 5.1E-07 61.9 16.6 176 291-543 2-180 (286)
41 cd02538 G1P_TT_short G1P_TT_sh 97.0 0.015 3.2E-07 60.8 14.5 176 290-543 2-181 (240)
42 TIGR01208 rmlA_long glucose-1- 96.9 0.04 8.6E-07 61.1 17.6 175 291-543 2-179 (353)
43 cd06425 M1P_guanylylT_B_like_N 96.9 0.043 9.3E-07 57.0 16.7 179 291-546 3-186 (233)
44 cd06428 M1P_guanylylT_A_like_N 96.8 0.065 1.4E-06 56.7 17.6 182 292-546 2-190 (257)
45 cd02517 CMP-KDO-Synthetase CMP 96.8 0.11 2.4E-06 54.0 19.0 185 288-548 1-191 (239)
46 TIGR02091 glgC glucose-1-phosp 96.8 0.036 7.8E-07 61.5 16.1 196 292-548 2-206 (361)
47 cd02524 G1P_cytidylyltransfera 96.8 0.064 1.4E-06 56.7 17.3 66 291-377 1-69 (253)
48 PRK14357 glmU bifunctional N-a 96.7 0.04 8.6E-07 62.9 16.5 176 291-548 3-179 (448)
49 TIGR00454 conserved hypothetic 96.7 0.0022 4.8E-08 65.4 5.8 61 290-372 2-62 (183)
50 PRK13385 2-C-methyl-D-erythrit 96.7 0.0025 5.3E-08 66.5 5.7 65 289-372 3-67 (230)
51 PRK09451 glmU bifunctional N-a 96.5 0.054 1.2E-06 62.2 15.6 179 288-548 5-185 (456)
52 TIGR02623 G1P_cyt_trans glucos 96.4 0.18 4E-06 53.6 18.0 190 291-543 2-195 (254)
53 PF01128 IspD: 2-C-methyl-D-er 96.4 0.0033 7.2E-08 66.3 4.7 65 289-372 1-65 (221)
54 PLN02728 2-C-methyl-D-erythrit 96.4 0.0046 1E-07 66.4 5.9 42 288-336 24-65 (252)
55 COG2266 GTP:adenosylcobinamide 96.4 0.0051 1.1E-07 62.6 5.7 61 290-373 2-62 (177)
56 PRK13368 3-deoxy-manno-octulos 96.4 0.2 4.3E-06 52.1 17.6 103 288-452 2-104 (238)
57 cd04198 eIF-2B_gamma_N The N-t 96.4 0.042 9.2E-07 56.8 12.4 129 291-473 3-134 (214)
58 COG0746 MobA Molybdopterin-gua 96.3 0.008 1.7E-07 62.2 6.7 100 288-453 4-103 (192)
59 cd04182 GT_2_like_f GT_2_like_ 96.3 0.0052 1.1E-07 60.5 5.0 50 289-358 1-50 (186)
60 cd02523 PC_cytidylyltransferas 96.2 0.087 1.9E-06 54.4 13.7 60 292-372 2-64 (229)
61 PRK14354 glmU bifunctional N-a 96.2 0.15 3.3E-06 58.3 17.0 62 289-371 3-64 (458)
62 TIGR01105 galF UTP-glucose-1-p 96.2 0.011 2.4E-07 64.8 7.3 64 288-372 3-69 (297)
63 PRK00560 molybdopterin-guanine 96.1 0.0058 1.3E-07 62.6 4.4 39 288-335 8-47 (196)
64 COG1213 Predicted sugar nucleo 96.1 0.015 3.3E-07 61.8 7.4 66 290-375 5-70 (239)
65 cd02513 CMP-NeuAc_Synthase CMP 96.0 0.13 2.9E-06 52.5 13.7 39 288-336 1-39 (223)
66 PRK10122 GalU regulator GalF; 95.9 0.022 4.7E-07 62.5 8.0 64 287-371 2-68 (297)
67 TIGR01479 GMP_PMI mannose-1-ph 95.9 0.12 2.7E-06 60.2 14.6 195 291-549 3-210 (468)
68 TIGR03310 matur_ygfJ molybdenu 95.9 0.0084 1.8E-07 59.6 4.3 48 291-358 2-49 (188)
69 TIGR02665 molyb_mobA molybdopt 95.7 0.0091 2E-07 59.6 3.7 38 289-334 1-38 (186)
70 PF12804 NTP_transf_3: MobA-li 95.7 0.0069 1.5E-07 58.9 2.7 48 291-358 1-48 (160)
71 PLN02917 CMP-KDO synthetase 95.7 0.21 4.6E-06 54.8 14.3 187 288-548 47-237 (293)
72 cd02503 MobA MobA catalyzes th 95.6 0.0093 2E-07 59.3 3.4 48 290-358 2-49 (181)
73 TIGR00453 ispD 2-C-methyl-D-er 95.5 0.011 2.3E-07 60.8 3.4 38 291-335 2-39 (217)
74 cd02516 CDP-ME_synthetase CDP- 95.4 0.012 2.5E-07 60.2 3.5 41 289-336 1-41 (218)
75 PRK02726 molybdopterin-guanine 95.4 0.015 3.2E-07 59.8 3.9 39 288-335 7-45 (200)
76 PRK00155 ispD 2-C-methyl-D-ery 95.4 0.015 3.2E-07 60.3 3.9 41 288-335 3-43 (227)
77 TIGR03202 pucB xanthine dehydr 95.4 0.014 3.1E-07 58.8 3.7 37 290-335 2-38 (190)
78 PRK00317 mobA molybdopterin-gu 95.3 0.016 3.4E-07 58.6 3.9 39 288-334 3-41 (193)
79 PRK14490 putative bifunctional 95.3 0.027 5.8E-07 63.5 6.1 40 287-335 173-212 (369)
80 TIGR01099 galU UTP-glucose-1-p 95.2 0.031 6.6E-07 59.0 5.8 60 291-371 3-65 (260)
81 COG1209 RfbA dTDP-glucose pyro 94.9 0.56 1.2E-05 51.3 14.4 158 292-513 4-165 (286)
82 PRK14489 putative bifunctional 94.9 0.028 6E-07 63.4 4.6 41 286-334 3-43 (366)
83 COG1208 GCD1 Nucleoside-diphos 94.6 0.093 2E-06 59.1 7.9 178 290-544 3-184 (358)
84 cd02541 UGPase_prokaryotic Pro 94.4 0.06 1.3E-06 57.1 5.5 61 291-372 3-66 (267)
85 PRK14500 putative bifunctional 94.4 0.036 7.8E-07 62.3 3.9 39 288-335 160-198 (346)
86 COG1211 IspD 4-diphosphocytidy 94.3 0.071 1.5E-06 56.9 5.8 65 288-371 4-68 (230)
87 PRK09382 ispDF bifunctional 2- 94.0 0.047 1E-06 62.1 3.9 43 287-336 4-46 (378)
88 cd04183 GT2_BcE_like GT2_BcbE_ 93.6 0.046 1E-06 56.4 2.8 38 291-335 1-41 (231)
89 TIGR00466 kdsB 3-deoxy-D-manno 93.4 0.28 6.1E-06 52.0 8.2 35 291-335 2-36 (238)
90 cd02507 eIF-2B_gamma_N_like Th 93.3 0.15 3.3E-06 52.8 5.9 64 291-375 3-69 (216)
91 COG0448 GlgC ADP-glucose pyrop 93.0 1.1 2.3E-05 51.3 12.3 199 287-549 4-210 (393)
92 PRK13389 UTP--glucose-1-phosph 92.1 0.2 4.4E-06 55.1 5.2 62 290-372 10-74 (302)
93 KOG1322 GDP-mannose pyrophosph 91.0 6.1 0.00013 44.5 14.9 187 287-548 8-199 (371)
94 cd02518 GT2_SpsF SpsF is a gly 90.1 0.57 1.2E-05 48.8 6.1 60 291-372 2-62 (233)
95 PRK15460 cpsB mannose-1-phosph 90.0 0.5 1.1E-05 55.5 6.0 204 289-549 6-219 (478)
96 COG0836 {ManC} Mannose-1-phosp 83.9 1.5 3.2E-05 49.1 5.0 201 290-549 3-212 (333)
97 TIGR03584 PseF pseudaminic aci 81.6 57 0.0012 34.4 15.6 183 291-545 2-185 (222)
98 COG4750 LicC CTP:phosphocholin 79.5 1.3 2.9E-05 46.3 2.6 60 291-372 3-65 (231)
99 COG2068 Uncharacterized MobA-r 76.7 2.9 6.3E-05 43.9 4.1 39 288-335 5-43 (199)
100 COG1210 GalU UDP-glucose pyrop 74.0 4.5 9.9E-05 44.5 4.8 60 291-371 7-69 (291)
101 TIGR03808 RR_plus_rpt_1 twin-a 59.6 52 0.0011 38.8 9.8 66 752-825 141-216 (455)
102 PF14134 DUF4301: Domain of un 43.9 22 0.00048 42.2 3.6 60 382-451 235-297 (513)
103 COG1861 SpsF Spore coat polysa 40.6 40 0.00087 36.4 4.7 67 288-375 3-69 (241)
104 KOG1460 GDP-mannose pyrophosph 29.5 3.9E+02 0.0085 30.4 10.1 185 289-545 4-193 (407)
105 TIGR03805 beta_helix_1 paralle 24.3 4.5E+02 0.0098 29.4 9.8 21 801-821 138-158 (314)
106 PF02348 CTP_transf_3: Cytidyl 23.3 75 0.0016 32.4 3.2 83 301-395 7-103 (217)
107 KOG0734 AAA+-type ATPase conta 23.2 60 0.0013 39.3 2.7 42 300-358 330-371 (752)
108 PLN03014 carbonic anhydrase 22.1 1.2E+02 0.0025 34.9 4.6 14 80-93 83-96 (347)
109 PF07538 ChW: Clostridial hydr 21.9 79 0.0017 24.4 2.3 31 764-795 2-35 (36)
No 1
>PLN02830 UDP-sugar pyrophosphorylase
Probab=100.00 E-value=2.2e-123 Score=1071.72 Aligned_cols=584 Identities=24% Similarity=0.318 Sum_probs=521.1
Q ss_pred chhHHhhccCCccHHHHHHHHHHcCCccccccCccchhhhhhhhhHHHHHHHHHhhhhccccCCCcccccccc--chhhH
Q 003283 123 NYFARVLASLNLDQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVL--EIEQV 200 (834)
Q Consensus 123 ~~~~~~~~~l~~~~~~l~~~L~~~gQ~Hll~~~~~w~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~~~~~ 200 (834)
++|+++++.|++++++|+++|.++||+|||++ |++ | +++
T Consensus 14 ~~~~~~~~~~~~~~~~l~~~L~~~gQ~HL~~~---w~~----------------------------------l~~~~~-- 54 (615)
T PLN02830 14 PSLHSNLALLSPDQRALVRRLLELGQSHLFEH---WPE----------------------------------PGVDDD-- 54 (615)
T ss_pred cccccccccCChhHHHHHHHHHHcCcHHHHhh---hhc----------------------------------cCCCHH--
Confidence 68999999999999999999999999999999 665 3 444
Q ss_pred HHHHHHHHHHHHHhccccCcchhHHHHHHHHHHHHccccccccccccccccccccccccc-c-CCCCcccCCChHHHHHH
Q 003283 201 KDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEI-H-VPSGLDLSQNTEYAAQA 278 (834)
Q Consensus 201 ~~~~~Ll~qL~~ld~~y~~~ggl~~y~~~a~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~-~-vP~g~~l~~~~~~~~~~ 278 (834)
+|++|++||..+|..|| ||+.+|+.++.+++.++.. +. ++++.+ + +|.+..+++++....+|
T Consensus 55 -e~~~L~~qL~~ld~~y~--g~l~~~~~~~~~~l~~s~~--~~-----------~~~~~i~P~vp~~~~~~~~~~~~~~~ 118 (615)
T PLN02830 55 -DKRRLLEQVARLDESYP--GGLAAYVSNAKELLADSKE--GV-----------NPFEGWTPSVPEGEVLEYGSEEFVEL 118 (615)
T ss_pred -HHHHHHHHHHhcccccc--chHHHHHHHHHHHHhhccc--CC-----------CchhhcccCCCccccccccchhhhHH
Confidence 89999999999999995 9999999999999986521 11 233443 4 58887777766666778
Q ss_pred HHHhhhccCcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcC-CcccceEEEecC
Q 003283 279 ALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYG-KQCITPVAIMTS 357 (834)
Q Consensus 279 ~~~Gle~L~kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g-~~~~IPl~IMTS 357 (834)
+++|+++|+|+|||+||||||||||+++||+ +|||++. +|+||||++++||+++|++|.++.+ ..+.||||||||
T Consensus 119 ~~~Gl~~l~kvavllLaGGlGTRLG~~~pK~--~lpv~~~--~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS 194 (615)
T PLN02830 119 EEAGLREAGNAAFVLVAGGLGERLGYSGIKV--ALPTETA--TGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTS 194 (615)
T ss_pred HHHHHHHhCcEEEEEecCCcccccCCCCCCc--ceecccC--CCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECC
Confidence 8999999999999999999999999999999 9999865 9999999999999999999977554 568999999999
Q ss_pred CCCCchHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccC--CCCccccCCCCcHHHHHHHhcCchHHHHHc
Q 003283 358 SAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMR--PFAPVCKPGGHGAIWKLAHDKGIFKWFHDN 435 (834)
Q Consensus 358 ~~~~Th~~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~--~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~ 435 (834)
+ +||++|++||++|+|||++++||+||+|+++||+++++|++++++ +++++|+||||||||+||+++|+||+|+++
T Consensus 195 ~--~T~~~T~~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~ 272 (615)
T PLN02830 195 D--DTHARTLKLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSA 272 (615)
T ss_pred c--chhHHHHHHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHc
Confidence 9 899999999999999999999999999999999998889999987 889999999999999999999999999999
Q ss_pred CceEEEEEeCCCCcccc-cHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccC
Q 003283 436 GRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFG 514 (834)
Q Consensus 436 Gikyi~v~~vDN~La~v-DP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~ 514 (834)
|+||+|||||||+|+++ ||.| +|||+.++++|++++|+| .++|++|++|+.++.||++ +++||||+|++++.
T Consensus 273 G~~yi~v~~vDN~L~~~Adp~f---lG~~~~~~~d~~~kvv~K--~~~E~vGvi~~~~~~dG~~--l~~vVEYse~~~ll 345 (615)
T PLN02830 273 GKKWVVFFQDTNGLVFKAIPAA---LGVSATKGFDMNSLAVPR--KAKEAIGAIAKLTHKDGRE--MVINVEYNQLDPLL 345 (615)
T ss_pred CCEEEEEEeccchhhhcccHHH---hHHHHhcCCceEEEEEEC--CCCcccceEEEEecCCCCe--eeEEEeecccCHHH
Confidence 99999999999999998 9855 899999999999998655 4689999999866788874 56999999999883
Q ss_pred ----CCCCCCCCCCccccCccceeeeEEeHHHHHhhhcccccCCccccccccCCCcceecCCCCccccCcceeccchhhh
Q 003283 515 ----ITRGPFSSNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNI 590 (834)
Q Consensus 515 ----~~~~~~~dg~l~s~f~~Ninnl~fsL~~L~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~~~~~p~rLE~~Mqdi 590 (834)
.++++..+++++|.|||||||||++|++|++++++ +.+.||++ +||| |+|.++ +.++.++|||||||||
T Consensus 346 ~~a~~p~g~l~~~~~~s~FPgNtN~L~v~L~a~~~~l~~-~~~~lp~i-vNpK----~~d~~~-~v~q~~trle~~mq~f 418 (615)
T PLN02830 346 RATGHPDGDVNDETGYSPFPGNINQLILKLGPYVKELAK-TGGVIEEF-VNPK----YKDATK-TAFKSPTRLECMMQDY 418 (615)
T ss_pred HhccCCCcccccccccccCCCCceeeEeeHHHHHHHHHh-CCCcccee-ccCc----ccCCCC-ceeecchHHHHHHHHH
Confidence 35566777888999999999999999999999986 78899985 5999 999774 5788999999999999
Q ss_pred hhhhccccccccccceeeecccceeeeeccCCCchhhhhccccCCCCCCChhhhHHHHHHHHHHHHHHCCcccCccc---
Q 003283 591 ADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIE--- 667 (834)
Q Consensus 591 ~~~F~~~y~~~~~~~~f~~~~R~~~FsPvKn~~~sa~k~~~~~~~~~~~sp~ta~~dl~~~~~~~L~~aG~~v~~~~--- 667 (834)
++.|. ...++||+++++|.+|+||||++.+|+++...+ ++ .+||+++++|+|++++++|+.+|+.+.++.
T Consensus 419 ~~~~~-----~~~~vg~~v~~~~~~f~PVKn~~s~a~~k~~~~-~~-~~~~~s~e~d~y~~~~llL~~s~~~~~~~~~~~ 491 (615)
T PLN02830 419 PKTLP-----PSAKVGFTVFDNWLAYSPVKNSPADGAAKVPEG-NP-THSATSGEMAIYGANCLILRKAGADVEEPVEDV 491 (615)
T ss_pred hhhcC-----cccccCceecCchheeccccCChHHhhhhcccC-CC-ccCcchhhHHHHHHHHHHHHhcCCccccCcccc
Confidence 99985 456799999999999999999999998888765 44 459999999999999999999888776443
Q ss_pred -CCCcccccCCCeEEEeCCCccccHHHHhccc-CC-CCCCCCcEEEEEeceEEeeceEEEEEEEEEecCCCCCccccCCC
Q 003283 668 -GNDKYIDDGPPYLILLHPALGLLWEVTRQKF-KG-GSVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNG 744 (834)
Q Consensus 668 -~~~~~~~~~P~~~I~L~P~~~~~~~~~~~k~-~~-gsi~~~S~L~VeG~~~f~~~v~ldGslvI~a~~~~g~~~~~~~g 744 (834)
.++.++..+|+ |.|+|+|+++|+++++|| ++ ++|+++|+|+|+|+++||+||+|||+|+|.|.. |+
T Consensus 492 ~~~~~~~~~~P~--I~L~p~f~~~~~~~~~k~~~~~~si~~~s~L~v~G~~~~~~~v~LdG~viI~a~~--~~------- 560 (615)
T PLN02830 492 VFNGIEVEVGPR--IVLKPAFALTFSELKKKVAPGSVKISQRSTLVLEGADIVIENLSLDGALVVRAVP--GA------- 560 (615)
T ss_pred ccCCcccCCCCe--EEECchhhhHHHHHHHHhcCCCCcccCCCeEEEEeeeEEecCeEEEEEEEEEcCC--CC-------
Confidence 56888888996 999999999999999999 76 699999999999999999999999999999994 33
Q ss_pred ccceecccccceEEEeeeEEeeCceeeecCCCCCCcccceeeeeEEEEEecceeeEecceeEecceEEEec
Q 003283 745 ESILQYGYRCGRCKLNNVKVLNKGIDWDCGDNTYWKHDVQWFEALKVILHGNAEFEASDVTLQGNHVFEVP 815 (834)
Q Consensus 745 ~~i~~~~~~~g~~~l~~~~V~N~G~~~~~~~~~~~~~e~~r~~~~~i~~~~~~ef~a~~v~~~g~~~~~vp 815 (834)
+|+|+|++|+|+||+|++++.+...+|+.|||||+|+++|+.|+..+. +..|+||
T Consensus 561 -----------~~~i~g~~v~N~g~~~~~~~~~~~~~~~~~irg~~~~~~e~~~~~~~~-----~g~~~~~ 615 (615)
T PLN02830 561 -----------EVTVGGLRVKNKGWTWEPVDKGTSAPEEIRIRGFVIKKVETAELVFDK-----PGKYTVP 615 (615)
T ss_pred -----------eEEecCeEEecCCcEEEecCCCCCcchhhhhcceeEeeeeeEEEEecC-----CCceeCC
Confidence 789999999999999999985457899999999999999999999887 5666654
No 2
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=100.00 E-value=9.7e-90 Score=774.68 Aligned_cols=438 Identities=19% Similarity=0.227 Sum_probs=366.2
Q ss_pred cHHHHHHHHHHcCCccccccCccchhhhhhhhhHHHHHHHHHhhhhccccCCCccccccccchhhHHHHHHHHHHHHHHh
Q 003283 135 DQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIE 214 (834)
Q Consensus 135 ~~~~l~~~L~~~gQ~Hll~~~~~w~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~Ll~qL~~ld 214 (834)
+..+|+++|.++||+|||++ |++ |+++ +|++|++||..+|
T Consensus 21 ~~~~l~~~l~~~gQ~HLl~~---w~~----------------------------------ls~~---e~~~L~~qL~~iD 60 (493)
T PLN02435 21 PPQALLERLKDYGQEDAFAL---WDE----------------------------------LSPE---ERDLLVRDIESLD 60 (493)
T ss_pred cHHHHHHHHHHcChHHHHHh---hhh----------------------------------CCHH---HHHHHHHHHHhcC
Confidence 56689999999999999999 655 7777 8999999999999
Q ss_pred ccccCcchhHHHHHHHHHHHHccccccccccccccccccccccccc-cCCCCcccCC---ChHHHHHHHHHhhhcc--Cc
Q 003283 215 QFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEI-HVPSGLDLSQ---NTEYAAQAALWGIEGL--PE 288 (834)
Q Consensus 215 ~~y~~~ggl~~y~~~a~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~-~vP~g~~l~~---~~~~~~~~~~~Gle~L--~k 288 (834)
..| +...+++++..+ .. +.+.+ |+|.+...+. ..+....|++.|+++| +|
T Consensus 61 ~~~--------l~~~~~~~~~~~----~~------------~~~~i~P~p~~~~~~~~~~~~~~~~~~~~~Gl~~I~~gk 116 (493)
T PLN02435 61 LPR--------IDRIIRCSLRSQ----GL------------PVPAIEPVPENSVSTVEERTPEDRERWWKMGLKAISEGK 116 (493)
T ss_pred HHH--------HHHHHHHHhhcc----CC------------chhccCCCChhhccchhccChHHHHHHHHHHHHHHhcCC
Confidence 844 223444444311 11 11222 5665543333 2244567889999999 59
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcC----CcccceEEEecCCCCCchH
Q 003283 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYG----KQCITPVAIMTSSAKNNHE 364 (834)
Q Consensus 289 vavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g----~~~~IPl~IMTS~~~~Th~ 364 (834)
||||+||||||||||+++||| ||+|+++ ++|||||+++|||+++|++|.+.+| ..+.||||||||+ .||+
T Consensus 117 vavvlLAGGqGTRLG~~~PKg--~~~Iglp--s~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~--~T~~ 190 (493)
T PLN02435 117 LAVVLLSGGQGTRLGSSDPKG--CFNIGLP--SGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSP--FTDE 190 (493)
T ss_pred EEEEEeCCCcccccCCCCCcc--ceecCCC--CCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCc--chhH
Confidence 999999999999999999999 9999987 9999999999999999999987654 4588999999999 7999
Q ss_pred HHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEe
Q 003283 365 RITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQ 444 (834)
Q Consensus 365 ~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~ 444 (834)
+|++||++|+|||++++||+||+|+++||++ .+|+++++++++++|+|+||||||.||+++|+||+|+++|++|+||||
T Consensus 191 ~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~-~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~ 269 (493)
T PLN02435 191 ATRKFFESHKYFGLEADQVTFFQQGTLPCVS-KDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYG 269 (493)
T ss_pred HHHHHHHhCCCCCCCccceEEEecCCcceEC-CCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEe
Confidence 9999999999999999999999999999998 789999999999999999999999999999999999999999999999
Q ss_pred CCCCcccc-cHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCC-C
Q 003283 445 VSNVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFS-S 522 (834)
Q Consensus 445 vDN~La~v-DP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~-d 522 (834)
|||+|+++ ||.| +|+++.++.+|.+++ +||+.++|+||++|+ +..||+ ++||||+|++++. +..+++ +
T Consensus 270 vDN~L~~~~DP~f---lG~~~~~~~d~~~kV-v~K~~~~EkvG~i~~-~~~~g~----~~vvEYsEl~~~~-~~~~~~~~ 339 (493)
T PLN02435 270 VDNALVRVADPTF---LGYFIDKGVASAAKV-VRKAYPQEKVGVFVR-RGKGGP----LTVVEYSELDQAM-ASAINQQT 339 (493)
T ss_pred cccccccccCHHH---HHHHHhcCCceEEEe-eecCCCCCceeEEEE-ecCCCC----EEEEEeccCCHHH-HhccCccc
Confidence 99999987 9966 899999999999995 889999999999997 236888 8999999999985 444433 4
Q ss_pred CCccccCcc-ceeeeEEeHHHHHhhhcccccCCccccccccCCCcceecCCCCccccCcceeccchhhhhhhhccccccc
Q 003283 523 NGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSR 601 (834)
Q Consensus 523 g~l~s~f~~-Ninnl~fsL~~L~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~~~~~p~rLE~~Mqdi~~~F~~~y~~~ 601 (834)
|.+. |.+ |||||||+++||+++.+. ....||+|+|+ |||||+|.. ++++|||.|+ +|.|+ -
T Consensus 340 g~L~--~~~gnI~~h~fs~~fL~~~~~~-~~~~l~~H~A~--Kkip~~~~~-----~ngiK~E~Fi---FDvf~-----~ 401 (493)
T PLN02435 340 GRLR--YCWSNVCLHMFTLDFLNQVANG-LEKDSIYHLAE--KKIPSIHGY-----TMGLKLEQFI---FDAFP-----Y 401 (493)
T ss_pred cccc--cchhhHHHhhccHHHHHHHHHh-hhhcCCceeec--cccCccCCC-----cceEEeeeee---ecchh-----h
Confidence 8876 997 999999999999999764 45569999999 999999932 3689999775 55554 1
Q ss_pred cccceeeecccceeeeeccCCCchhhhhccccCCCCCCChhhhHHHHHHHHHHHHHHCCcccCccc-CCCcccccCCCeE
Q 003283 602 CYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIE-GNDKYIDDGPPYL 680 (834)
Q Consensus 602 ~~~~~f~~~~R~~~FsPvKn~~~sa~k~~~~~~~~~~~sp~ta~~dl~~~~~~~L~~aG~~v~~~~-~~~~~~~~~P~~~ 680 (834)
+.++++.+++|..+|+|+||++++. .|||+||+.++++++++||+++|+.+.+.. .....+++.|.
T Consensus 402 a~~~~~~eV~R~~EFaPlKN~~g~~-----------~Dsp~tar~~l~~~~~~wl~~aG~~~~~~~~~~~~~vEisP~-- 468 (493)
T PLN02435 402 APSTALFEVLREEEFAPVKNANGSN-----------FDTPESARLLVLRLHTRWVVAAGGFLTHSVPLYATGVEVSPL-- 468 (493)
T ss_pred cCceEEEEEchhhccCcccCCCCCC-----------CCCHHHHHHHHHHHHHHHHHHcCCEecCCccccCCcEEeCCc--
Confidence 3467788999999999999988752 369999999999999999999999774211 11234566664
Q ss_pred EEeC
Q 003283 681 ILLH 684 (834)
Q Consensus 681 I~L~ 684 (834)
+.++
T Consensus 469 ~sY~ 472 (493)
T PLN02435 469 CSYA 472 (493)
T ss_pred eeeC
Confidence 5554
No 3
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=100.00 E-value=3.2e-81 Score=706.88 Aligned_cols=450 Identities=17% Similarity=0.162 Sum_probs=360.4
Q ss_pred HHHHHHcCCccccccCccchhhhhhhhhHHHHHHHHHhhhhccccCCCccccccccchhhHHHHHHHHHHH-HHHhcccc
Q 003283 140 IKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTL-AEIEQFYD 218 (834)
Q Consensus 140 ~~~L~~~gQ~Hll~~~~~w~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~Ll~qL-~~ld~~y~ 218 (834)
+++|.++||+|||++ |++ |+++ +|..|++|| +.+....
T Consensus 2 ~~~l~~~gQ~hl~~~---~~~----------------------------------l~~~---e~~~l~~ql~~~~~~~d- 40 (482)
T PTZ00339 2 LKVLTGDGQDHLREA---LKR----------------------------------RSEG---EFTPLATQILSSLTNVD- 40 (482)
T ss_pred hhhhhhcCHHHHHHH---HHh----------------------------------CCHH---HHHHHHHHHHHHhhccC-
Confidence 568999999999999 655 8777 999999999 7443321
Q ss_pred CcchhHHHHHHHHHHHHccccccccccccccccccccccccccCCCCccc--CCChHHHHHHHHHhhhccC--cEEEEEe
Q 003283 219 CVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEIHVPSGLDL--SQNTEYAAQAALWGIEGLP--ELGEIYP 294 (834)
Q Consensus 219 ~~ggl~~y~~~a~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~~vP~g~~l--~~~~~~~~~~~~~Gle~L~--kvavVlL 294 (834)
+.-+...++.+......+....+..+ +.++ +.+ -|+|..... ....+...+|+++|+++|+ |+|+|+|
T Consensus 41 -~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~--~p~~~~~~~~~~~~~~~~~~~~~~Gl~~i~~gkvavViL 112 (482)
T PTZ00339 41 -FKHRNAVLEPKLEEYNAEAPVGIDID--SIHN---CNI--EPPNNNTFIDIYEKEKERKELKESGLEIIKKGEVAVLIL 112 (482)
T ss_pred -HHHHHHHHHHHhhhhhcccccccccc--cccc---ccc--CCCCcccccccccCHHHHHHHHHhHHHHHhcCCeEEEEE
Confidence 25566666666644432210000000 0000 111 155553322 2234566789999999998 6999999
Q ss_pred cCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcC--CcccceEEEecCCCCCchHHHHHHHHH
Q 003283 295 LGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYG--KQCITPVAIMTSSAKNNHERITSLCER 372 (834)
Q Consensus 295 AGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g--~~~~IPl~IMTS~~~~Th~~T~~fle~ 372 (834)
|||||||||++.||+ |+||+++ +++||||++++||++++.++.+++| ..+.||||||||+ .||+.|++||++
T Consensus 113 AGG~GTRLg~~~PK~--ll~I~~~--~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~--~t~~~t~~~f~~ 186 (482)
T PTZ00339 113 AGGLGTRLGSDKPKG--LLECTPV--KKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSS--FNHDQTRQFLEE 186 (482)
T ss_pred CCCCcCcCCCCCCCe--EeeecCC--CCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCc--chHHHHHHHHHh
Confidence 999999999999999 9999865 9999999999999999998876665 3478999999999 799999999999
Q ss_pred hCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCCcccc
Q 003283 373 LRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAAT 452 (834)
Q Consensus 373 n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~La~v 452 (834)
|+|||++++||+||+|+++||++.++|+++++++++++|+|+||||||.||+++|+||+|+++|++|+||+||||+|+++
T Consensus 187 ~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~k~ 266 (482)
T PTZ00339 187 NNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISIDNILAKV 266 (482)
T ss_pred ccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecCcccccc
Confidence 99999999999999999999999778999999999999999999999999999999999999999999999999999998
Q ss_pred -cHhHHHHhhhhhhcCC-ceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCC-CCCccccC
Q 003283 453 -DLTLLALAGIGLHHGK-KLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFS-SNGLQADF 529 (834)
Q Consensus 453 -DP~~l~flG~~~~~~~-~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~-dg~l~s~f 529 (834)
||.| +|+++..+. ++..++ + |+.++|+||++|+ .||+ +++|||+|++++. ++.+.. +|.+ .|
T Consensus 267 ~DP~f---lG~~~~~~~~~~~~kv-v-k~~~~EkvG~~~~---~~g~----~~vvEYsEi~~~~-~~~~~~~~g~l--~f 331 (482)
T PTZ00339 267 LDPEF---IGLASSFPAHDVLNKC-V-KREDDESVGVFCL---KDYE----WQVVEYTEINERI-LNNDELLTGEL--AF 331 (482)
T ss_pred cCHHH---hHHHHHCCchhheeee-e-cCCCCCceeEEEE---eCCc----ccEEEEeccChhh-hhcccccCCee--cc
Confidence 9966 899999999 777775 5 5678999999998 6888 8999999999985 443333 2444 57
Q ss_pred cc-ceeeeEEeHHHHHhhhcccccCCccccccccCCCcceecCCCCccccCcceeccchhhhhhhhccccccccccceee
Q 003283 530 PA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVED 608 (834)
Q Consensus 530 ~~-Ninnl~fsL~~L~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~~~~~p~rLE~~Mqdi~~~F~~~y~~~~~~~~f~ 608 (834)
.+ |||||||+++||+++++......||+|+|. |||||+|... ..++++|||.| |||+|+ -+.++++.
T Consensus 332 ~~gnI~~h~fsl~fl~~~~~~~~~~~l~~H~a~--Kkip~~~~~~--~~png~K~E~F---iFDvf~-----~~~~~~~~ 399 (482)
T PTZ00339 332 NYGNICSHIFSLDFLKKVAANRLYESTPYHAAR--KKIPYINGPT--DKTMGIKLEAF---IFDIFR-----YAKNVLIL 399 (482)
T ss_pred cccceEEEEEEHHHHHHHhhhhhhhcCCceeec--cccCeeCCCC--CCcceeeehhh---hhhHHH-----hcccccee
Confidence 76 999999999999998753234569999999 9999999432 45689999966 566665 23477788
Q ss_pred ecccceeeeeccCCCchhhhhccccCCCCCCChhhhHHHHHHHHHHHHHHCCcccCcc-cCCCcccccCCCeEEEeC
Q 003283 609 DLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEI-EGNDKYIDDGPPYLILLH 684 (834)
Q Consensus 609 ~~~R~~~FsPvKn~~~sa~k~~~~~~~~~~~sp~ta~~dl~~~~~~~L~~aG~~v~~~-~~~~~~~~~~P~~~I~L~ 684 (834)
+++|..+|+|+||+++.. .|||+||+.+++++|++||.++|+.+... ...+..+++.|. |.+.
T Consensus 400 ev~R~~eFsPlKNa~g~~-----------~d~p~tar~~l~~~~~~wl~~ag~~~~~~~~~~~~~~Eisp~--~sy~ 463 (482)
T PTZ00339 400 EVDREDEFAPIKNADGAA-----------ADTILNAQKLLLSLHTRWLEAALETVAGNPREGLNLCEISPL--VSYG 463 (482)
T ss_pred eechhhccccccCCCCCC-----------CCCHHHHHHHHHHHHHHHHHHCCCeeeccccCCCceEEecCc--ceeC
Confidence 999999999999988653 36999999999999999999999976421 112334666774 5544
No 4
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=100.00 E-value=1e-81 Score=678.21 Aligned_cols=308 Identities=23% Similarity=0.281 Sum_probs=277.5
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHH
Q 003283 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (834)
Q Consensus 289 vavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~~ 368 (834)
+|||+||||||||||+++||| +|||+++ +++||||+|++||+++|++|.+.++ +.||||||||+ +||++|++
T Consensus 1 ~a~vllaGG~GTRLG~~~pKg--~~~v~~~--~~~s~f~l~~~~i~~l~~~~~~~~~--~~IPl~IMTS~--~Th~~T~~ 72 (315)
T cd06424 1 AVFVLVAGGLGERLGYSGIKI--GLPVELT--TNTTYLQYYLNYIRAFQEASKKGEK--MEIPFVIMTSD--DTHSKTLK 72 (315)
T ss_pred CEEEEecCCCccccCCCCCce--eeeccCC--CCCcHHHHHHHHHHHHHHHhhccCC--CceeEEEECCC--chhHHHHH
Confidence 589999999999999999999 9999976 9999999999999999998876455 89999999999 79999999
Q ss_pred HHHHhCCCCCCCCceEEEecCCeeeEecCCCcc--cccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCC
Q 003283 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQW--LVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (834)
Q Consensus 369 fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki--~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vD 446 (834)
||++|+|||++++||+||+|+++||+++.+|++ .++++++++|+|+||||||+||+++|+||+|+++|+||++|+|||
T Consensus 73 ~fe~n~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vd 152 (315)
T cd06424 73 LLEENNYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDT 152 (315)
T ss_pred HHHHCCccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecc
Confidence 999999999999999999999999998788999 478899999999999999999999999999999999999999999
Q ss_pred CCcccc-cHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccC----CCCCCCC
Q 003283 447 NVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFG----ITRGPFS 521 (834)
Q Consensus 447 N~La~v-DP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~----~~~~~~~ 521 (834)
|+|+++ ||.| +|+++.+++++++++|.|+ +.|+||++|+.++.||+ ++++||||||++++. ..+++.+
T Consensus 153 N~L~~~adP~f---iG~~~~~~~d~~~k~v~~~--~~E~vG~~~~~~~~~g~--~~v~nvEYsel~~~~~~~~~~~g~~~ 225 (315)
T cd06424 153 NALAFKAIPAV---LGVSATKSLDMNSLTVPRK--PKEAIGALCKLTKNNGK--SMTINVEYNQLDPLLRASGKDDGDVD 225 (315)
T ss_pred hhhhhccChhh---EEEEecCCCceEeEEEeCC--CCCceeeEEEEecCCCc--eEEEEEEeecCCHHHHhcCCCCCCcc
Confidence 999999 9955 8999999999999987654 57999999986567888 345679999999863 1223344
Q ss_pred CCCccccCccceeeeEEeHHHHHhhhcccccCCccccccccCCCcceecCCCCccccCcceeccchhhhhhhhccccccc
Q 003283 522 SNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSR 601 (834)
Q Consensus 522 dg~l~s~f~~Ninnl~fsL~~L~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~~~~~p~rLE~~Mqdi~~~F~~~y~~~ 601 (834)
+.+++|.||||||+|+|+|++|.+++++ +.+.+|+|+ ||| |.|.++ ..+++|+||||||||||+.|+ .
T Consensus 226 ~~~~~s~f~gNi~~~~f~l~~~~~~l~~-~~~~~~~~~-n~k----y~d~~~-~~~~~p~rlE~~m~D~~~~f~-----~ 293 (315)
T cd06424 226 DKTGFSPFPGNINQLVFSLGPYMDELEK-TKGAIPEFI-NPK----YKDATK-TAFKSPTRLECMMQDIPLLFE-----E 293 (315)
T ss_pred cccccccCCCeeeeEEEeHHHHHHHHhh-ccccCeeee-cCC----cccCCC-CeecCchHHHHHHHHHHHhhc-----c
Confidence 5667899999999999999999999997 678899988 877 999873 468899999999999999997 4
Q ss_pred cccceeeecccceeeeeccCCC
Q 003283 602 CYKGVEDDLDTFMVYNERRRVT 623 (834)
Q Consensus 602 ~~~~~f~~~~R~~~FsPvKn~~ 623 (834)
..++++++++||.+|||+||.+
T Consensus 294 ~~~~~~~~~~r~~~fsP~KN~~ 315 (315)
T cd06424 294 DYRVGFTVLDRWLCFSPVKNNL 315 (315)
T ss_pred cceeEEEEEchhhcccccCCCC
Confidence 6799999999999999999963
No 5
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=100.00 E-value=3.5e-77 Score=669.55 Aligned_cols=367 Identities=19% Similarity=0.208 Sum_probs=320.1
Q ss_pred hhccCcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCc
Q 003283 283 IEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN 362 (834)
Q Consensus 283 le~L~kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~T 362 (834)
.++|+|+|||+|||||||||||++||| +|||. +|+||||++++||++++ +.|| +.||||||||+ +|
T Consensus 74 ~~~L~k~avlkLnGGlGTrmG~~~PKs--~i~v~----~~~sfldl~~~qi~~l~----~~~g--~~vPl~iMtS~--~T 139 (469)
T PLN02474 74 KKLLDKLVVLKLNGGLGTTMGCTGPKS--VIEVR----NGLTFLDLIVIQIENLN----KKYG--CNVPLLLMNSF--NT 139 (469)
T ss_pred HHHHhcEEEEEecCCcccccCCCCCce--eEEcC----CCCcHHHHHHHHHHHHH----HHcC--CCceEEEECCC--ch
Confidence 457899999999999999999999999 99984 99999999999999998 5778 89999999999 79
Q ss_pred hHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCC---CccccCCCCcHHHHHHHhcCchHHHHHcCceE
Q 003283 363 HERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPF---APVCKPGGHGAIWKLAHDKGIFKWFHDNGRKG 439 (834)
Q Consensus 363 h~~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~---~i~~~P~GHGdIy~aL~~sGlLd~l~~~Giky 439 (834)
|++|++||++|+||+ .+|++|+|+++||++ .+|+++++.+. +.+|+|+||||+|.+|++||+||+|+++|+||
T Consensus 140 ~~~T~~~l~k~~~~~---~~i~~F~Q~~~P~l~-~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~ey 215 (469)
T PLN02474 140 HDDTQKIVEKYTNSN---IEIHTFNQSQYPRVV-ADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEY 215 (469)
T ss_pred hHHHHHHHHHcCCCc---cceEEEecCceeeEe-cCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEE
Confidence 999999999999984 589999999999999 66788887554 55699999999999999999999999999999
Q ss_pred EEEEeCCCCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCC
Q 003283 440 ATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGP 519 (834)
Q Consensus 440 i~v~~vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~ 519 (834)
+||+|+||+++.+||.| +||++.++++|.+++ ++|+.+++++|+||. .||+ ++++||+|+|++.. +.
T Consensus 216 ifv~nvDNLga~vDp~~---lg~~~~~~~e~~~ev-~~Kt~~d~kgG~l~~---~dgk----~~lvEysqvp~e~~-~~- 282 (469)
T PLN02474 216 VFIANSDNLGAIVDLKI---LNHLIQNKNEYCMEV-TPKTLADVKGGTLIS---YEGK----VQLLEIAQVPDEHV-NE- 282 (469)
T ss_pred EEEEecCccccccCHHH---HHHHHhcCCceEEEE-eecCCCCCCccEEEE---ECCE----EEEEEEecCCHHHH-Hh-
Confidence 99999999877789976 899999999999996 777889999999997 7999 99999999999862 21
Q ss_pred CCCCCccccCcc-ceeeeEEeHHHHHhhhcccccCCcccc-ccccCCCcceecCCCCccccCcceeccchhhhhhhhccc
Q 003283 520 FSSNGLQADFPA-NTNILYVDLASAELVGSSENERSLPGM-VLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNT 597 (834)
Q Consensus 520 ~~dg~l~s~f~~-Ninnl~fsL~~L~~vl~~~~~~~Lp~h-IanpKKkIpy~D~~g~~~~~~p~rLE~~Mqdi~~~F~~~ 597 (834)
.++. ..|++ |||||||+|++|+++++. +.||+| |.||| ++| | .+.+|||++|+|++..|++
T Consensus 283 -f~~~--~kf~~fNtnn~w~~L~~l~~~~~~---~~l~~~~I~n~k----~~~--g----~kv~q~Et~ig~ai~~f~~- 345 (469)
T PLN02474 283 -FKSI--EKFKIFNTNNLWVNLKAIKRLVEA---DALKMEIIPNPK----EVD--G----VKVLQLETAAGAAIRFFDN- 345 (469)
T ss_pred -hccc--ccceeeeeeeEEEEHHHHHHHhhc---CCCCceeecCCC----CCC--C----eeEEEeHHHHHHHHHhCCC-
Confidence 2233 35998 999999999999999864 457764 56766 454 3 3679999999999999962
Q ss_pred cccccccceeeecccceeeeeccCCCchhhhhccccCCCCCCChhhhHHHHHHHHHHHHHHCCcccCcccCCCcccccCC
Q 003283 598 YSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDGP 677 (834)
Q Consensus 598 y~~~~~~~~f~~~~R~~~FsPvKn~~~sa~k~~~~~~~~~~~sp~ta~~dl~~~~~~~L~~aG~~v~~~~~~~~~~~~~P 677 (834)
....+++|. .|+||||+. ++.+++.|+|..+..|+..+|...- ...|
T Consensus 346 -------~~~v~VpR~-rF~PVK~~~----------------dll~~rsdly~l~~~~l~~~~~~~~---------~~~p 392 (469)
T PLN02474 346 -------AIGINVPRS-RFLPVKATS----------------DLLLVQSDLYTLVDGFVIRNKARTN---------PSNP 392 (469)
T ss_pred -------ceEEEEchh-hccCCCCCC----------------CHHHHHHHHHHhccCeEEecCcccC---------CCCC
Confidence 334667777 499999954 4679999999999999998887531 1245
Q ss_pred CeEEEeCCCccccHHHHhcccCC-CCCCCCcEEEEEeceEEeeceEEEEEEEEEecC
Q 003283 678 PYLILLHPALGLLWEVTRQKFKG-GSVSKGSELQIEVAEFLWRNVQLDGSLIIVAEN 733 (834)
Q Consensus 678 ~~~I~L~P~~~~~~~~~~~k~~~-gsi~~~S~L~VeG~~~f~~~v~ldGslvI~a~~ 733 (834)
. |.|+|. +..+++|.+||++ +||.++++|+|+|+|+|++||+|.|+|+|.|..
T Consensus 393 ~--IeL~~~-f~~v~~f~~rf~~iPsl~~~d~LtV~Gdv~fG~~v~l~G~v~i~~~~ 446 (469)
T PLN02474 393 S--IELGPE-FKKVANFLSRFKSIPSIVELDSLKVSGDVWFGSGIVLKGKVTITAKS 446 (469)
T ss_pred c--EEECcc-cccHHhHHHhcCCCCCcccCCeEEEeeeeEECCCcEEEEEEEEEcCC
Confidence 4 999999 7788999999998 799999999999999999999999999999985
No 6
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=2e-76 Score=652.60 Aligned_cols=424 Identities=19% Similarity=0.218 Sum_probs=360.6
Q ss_pred cHHHHHHHHHHcCCccccccCccchhhhhhhhhHHHHHHHHHhhhhccccCCCccccccccchhhHHHHHHHHHHHHHHh
Q 003283 135 DQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIE 214 (834)
Q Consensus 135 ~~~~l~~~L~~~gQ~Hll~~~~~w~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~Ll~qL~~ld 214 (834)
++..+...|.++||+|||.+ |+| |+++ ++..|++|++.++
T Consensus 2 ~~~~~~~~l~~~Gq~~l~~~---w~e----------------------------------L~~~---~~~~l~~~ie~l~ 41 (477)
T KOG2388|consen 2 DRTKLHLILLEAGQSHLFTQ---WPE----------------------------------LSEA---DKESLLDQIEVLN 41 (477)
T ss_pred chhHHHHHHHHcChHhHhhh---chh----------------------------------cCHH---HHHHHHHHHHhhc
Confidence 56788899999999999999 777 7777 7889999999999
Q ss_pred ccccCcchhHHHHHHHHHHHHccccccccccccccccccccccccccCCCCccc--CC-ChHHHHHHHHHhhhccC--cE
Q 003283 215 QFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEIHVPSGLDL--SQ-NTEYAAQAALWGIEGLP--EL 289 (834)
Q Consensus 215 ~~y~~~ggl~~y~~~a~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~~vP~g~~l--~~-~~~~~~~~~~~Gle~L~--kv 289 (834)
.++ ++|+.. .+|.+.. +. .. +..++|+.... .. ......+|+..|++.|+ ++
T Consensus 42 l~~--~~~~~~--~~a~~~~--~~---~~--------------~~~p~p~~~~~~~~~~~~~d~d~~~~~G~~~i~~~~~ 98 (477)
T KOG2388|consen 42 LSR--IHGLQR--ISANEDS--KP---VG--------------EIRPVPESKSWPLKERGLDDVDQWWKEGLRLIAEGKV 98 (477)
T ss_pred ccc--cchhhh--cChhhcc--Cc---cc--------------ccCCCCccccceecccCchhhhHHHhcChhhhhcCcc
Confidence 977 466554 3443333 10 01 11244443322 11 22333448899999997 89
Q ss_pred EEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHH
Q 003283 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSL 369 (834)
Q Consensus 290 avVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~~f 369 (834)
|++++|||||||||+++||+ |+|++++ +|+||||+++|+|+++|++|.+..+.++.||||||||. .|++.|++|
T Consensus 99 a~~llaGgqgtRLg~~~pkg--~~~~G~~--~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~--~T~e~T~~~ 172 (477)
T KOG2388|consen 99 AVVLLAGGQGTRLGSSGPKG--CYPIGLP--SGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSA--FTHEATLEY 172 (477)
T ss_pred eEEEeccCceeeeccCCCcc--eeecCCc--cccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCC--CccHHhHhH
Confidence 99999999999999999999 9999998 89999999999999999999888877799999999999 799999999
Q ss_pred HHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCCc
Q 003283 370 CERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVV 449 (834)
Q Consensus 370 le~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~L 449 (834)
|+.|+||||.++||+||+|+++||++ .+|+++++.+.+++++|+|||++|.|+.++ |++|.++|++|+|||||||+|
T Consensus 173 f~~~~~FGl~~~qv~~f~Q~~l~c~~-~~gk~~le~k~~~a~ap~gngg~y~ai~~~--l~dm~~rgi~~~hiy~VdnvL 249 (477)
T KOG2388|consen 173 FESHKYFGLKPEQVTFFQQGKLPCLD-LDGKFILEQKNSLAAAPDGNGGLYRAIKDQ--LEDMAARGIFYDHIYCVDNVL 249 (477)
T ss_pred HhhcCCCCCChhHeeeeecccccccc-cCCceeccCccchhcCCCCCcHHHHHHHhh--hhHHHhhcccEEEEEEeccee
Confidence 99999999999999999999999998 678899999999999999999999999999 999999999999999999999
Q ss_pred ccc-cHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCC-CccccceEEEEecccCccCCCCCCCCCCCccc
Q 003283 450 AAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLD-GKWAYGLSCIEYTEFDKFGITRGPFSSNGLQA 527 (834)
Q Consensus 450 a~v-DP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~d-Gk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s 527 (834)
+++ ||+| +||++.+++++..++ |+|.++.|.||++|. .+ |. ++||||+|++++. +.....+|....
T Consensus 250 ~k~aDP~f---iG~~it~~~d~~~k~-V~k~~p~E~vG~~~~---~~~G~----~~vvEYsEi~~~~-a~~~~~d~g~l~ 317 (477)
T KOG2388|consen 250 LKVADPVF---IGFSITKEADVAAKV-VPKINPGEVVGIVAL---KGQGT----PLVVEYSELDAEL-AKAKAPDGGRLL 317 (477)
T ss_pred eEecccce---eeEEeechhhHhhhh-ccccCCCCceEEEEe---cCCCc----eeEEEecccCHHH-HhhcccccCccc
Confidence 998 9965 999999999999996 778889999999998 45 77 9999999999986 666777733333
Q ss_pred cCccceeeeEEeHHHHHhhhcccccCCccccccccCCCcceecCCCCcc---ccCcceeccchhhhhhhhcccccccccc
Q 003283 528 DFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTH---SVPGGRLECTMQNIADNFLNTYSSRCYK 604 (834)
Q Consensus 528 ~f~~Ninnl~fsL~~L~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~~---~~~p~rLE~~Mqdi~~~F~~~y~~~~~~ 604 (834)
.+++|||||||+++||+++... ....+|+|+|. |||||+|.+|... .++++++|. ++|++|+ ...+
T Consensus 318 ~~agnI~nh~ft~dFLkk~~~~-~~~~lp~H~a~--kKip~~~~~g~~~kP~kpnGik~E~---fifdvf~-----~~k~ 386 (477)
T KOG2388|consen 318 FNAGNICNHFFTLDFLKKVTRA-SVPLLPYHKAE--KKIPYVDSTGKLVKPTKPNGIKLEQ---FIFDVFP-----SAKK 386 (477)
T ss_pred cCCccHHHHHHhhHHHHHhhhc-ccccchhhhhh--ccccccccCCcccCCCCCCceeEEe---eeeeecc-----cccc
Confidence 4455999999999999999886 66679999999 9999999876442 346789995 4677886 2367
Q ss_pred ceeeecccceeeeeccCCCchhhhhccccCCCCCCChhhhHHHHHHHHHHHHHHCCcccC
Q 003283 605 GVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLP 664 (834)
Q Consensus 605 ~~f~~~~R~~~FsPvKn~~~sa~k~~~~~~~~~~~sp~ta~~dl~~~~~~~L~~aG~~v~ 664 (834)
+++.+++|..+|+|+||...+. .|||+||+.++++.|..|+.++|+.+.
T Consensus 387 f~~meV~Re~efSPlKng~~~~-----------~D~p~T~~~~~l~~h~~wi~~~g~~f~ 435 (477)
T KOG2388|consen 387 FGLMEVPREEEFSPLKNGGKSS-----------TDNPSTARIALLRLHIRWIEKAGGIFS 435 (477)
T ss_pred eeEEecchhhhcCccccCCCCC-----------CCChhHHHHHHHHhhhhehhccCcEEe
Confidence 8888999999999999977652 469999999999999999999999875
No 7
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=100.00 E-value=8.1e-74 Score=639.38 Aligned_cols=409 Identities=22% Similarity=0.243 Sum_probs=302.5
Q ss_pred hHHHHHHHHHHHHccccccccccccccccccccccccccCCC-CcccCCChHHHHHH-HHHhhhccCcEEEEEecCCccc
Q 003283 223 IIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEIHVPS-GLDLSQNTEYAAQA-ALWGIEGLPELGEIYPLGGSAD 300 (834)
Q Consensus 223 l~~y~~~a~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~~vP~-g~~l~~~~~~~~~~-~~~Gle~L~kvavVlLAGGlGT 300 (834)
+..|+..+.+.+.++.. .. ..++.+..|. ....++++.....| ...+...++|+|||+|||||||
T Consensus 2 ~~~f~~l~~~yl~~~~~--~~-----------~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~kvavl~LaGGlGT 68 (420)
T PF01704_consen 2 LDSFFSLFRRYLSESKS--HQ-----------IDWDKIMPPPPEEVVDYESLKEYEWDEGLEAIALGKVAVLKLAGGLGT 68 (420)
T ss_dssp HHHHHHHHHHHHHCCCC--CS-------------GGGEEE-GTGCEEEHHHHHHSCHHHHHHHHHTTCEEEEEEEESBSG
T ss_pred hHHHHHHHHHHHHhccc--CC-----------cccccCCCCChhhcCChhHhcccccccchhHHhhCCEEEEEEcCcccC
Confidence 45688888898987321 11 1234433332 22222222111112 3456667779999999999999
Q ss_pred cCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHHHHHhCCCCCCC
Q 003283 301 RLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQ 380 (834)
Q Consensus 301 RLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~~fle~n~yFGl~~ 380 (834)
|||+++||| ++||. +++||||++++||++++ +.|| +.||||||||+ +||++|++||++ |||++.
T Consensus 69 rlG~~~pK~--~~~v~----~~~t~ldl~~~qi~~l~----~~~~--~~iPl~iMtS~--~T~~~T~~~l~k--yfg~~~ 132 (420)
T PF01704_consen 69 RLGCSGPKG--LIPVR----EGKTFLDLIVEQIEALN----KKYG--VDIPLYIMTSF--NTHEDTRKFLEK--YFGLDV 132 (420)
T ss_dssp CCTESSBGG--GSEEE----TTEEHHHHHHHHHHHHH----HHHT--TT-EEEEEEET--TTHHHHHHHHHH--GCGSSC
T ss_pred ccCCCCCCc--ceecC----CcccHHHHHHHHHHHHh----cccc--ccceEEEecCc--ccHHHHHHHHHH--hcCCCc
Confidence 999999999 99995 99999999999999998 5677 89999999999 799999999999 999987
Q ss_pred CceEEEecCCeeeEecCCCcccccCCC-----CccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCCcccccHh
Q 003283 381 SSFQLFEQPLVPAVDAEDGQWLVMRPF-----APVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLT 455 (834)
Q Consensus 381 ~qV~~F~Q~~vP~l~~~dgki~l~~~~-----~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~La~vDP~ 455 (834)
+ |++|+|+++||++ .+|+++++.+. ...|+||||||||.||++||+||+|+++|++|+||+||||+++.+||.
T Consensus 133 ~-v~~F~Q~~~P~i~-~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp~ 210 (420)
T PF01704_consen 133 D-VFFFKQSKLPAID-ADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDPV 210 (420)
T ss_dssp C-EEEEEE-EEEEEE-TTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-HH
T ss_pred c-eEEEeecCcceEe-CCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCHH
Confidence 7 9999999999999 67888887554 236999999999999999999999999999999999999944445996
Q ss_pred HHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCccccCcc-cee
Q 003283 456 LLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA-NTN 534 (834)
Q Consensus 456 ~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s~f~~-Nin 534 (834)
| +||++.++.+|++++ ++|+.++|++|+||+ .||+ +++|||+|+|++..++.+..++ |.. |||
T Consensus 211 ~---lG~~~~~~~~~~~ev-v~Kt~~dek~Gvl~~---~~G~----~~vvEysqip~~~~~~~~~~~~-----~~~Fntn 274 (420)
T PF01704_consen 211 F---LGYMIEKNADFGMEV-VPKTSPDEKGGVLCR---YDGK----LQVVEYSQIPKEHMAEFKDIKG-----FLLFNTN 274 (420)
T ss_dssp H---HHHHHHTT-SEEEEE-EE-CSTTTSSEEEEE---ETTE----EEEEEGGGS-HHGHHHHTSTTT-----SBEEEEE
T ss_pred H---HHHHHhccchhheee-eecCCCCCceeEEEE---eCCc----cEEEEeccCCHHHHHhhhcccc-----ceEEEec
Confidence 6 899999999999997 667789999999998 7999 9999999999995433333322 554 999
Q ss_pred eeEEeHHHHHhhhcccccCCccccccccCCCcceecCCCCccccCcceeccchhhhhhhhccccccccccceeeecccce
Q 003283 535 ILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFM 614 (834)
Q Consensus 535 nl~fsL~~L~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~~~~~p~rLE~~Mqdi~~~F~~~y~~~~~~~~f~~~~R~~ 614 (834)
|+||+|++|+++++. ....||+|++. |||||+|. .++.+|||++|++.+..|.+ ....+++| .
T Consensus 275 Ni~~~l~~l~~~~~~-~~~~Lp~h~a~--Kki~~~d~-----~~~~~q~Et~i~~~i~~f~~--------~~~v~V~R-~ 337 (420)
T PF01704_consen 275 NIWFSLDFLKRLLER-DELQLPIHVAK--KKIPYVDN-----GIKVIQFETAIGFAIFQFDN--------SFAVEVPR-D 337 (420)
T ss_dssp EEEEEHHHHHHHHHT-TTCCS-EEEEE--EESSEECT-----EEEEEEEECGGGGGGGGCTS--------EEEEEE-G-G
T ss_pred eeeEEHHHHHHHHHh-ccccCccEEcc--hhcccccC-----CccEEeehhhhhchHhhccC--------cEEEEEcH-H
Confidence 999999999999986 56789999988 99999993 24789999999999988852 22347888 8
Q ss_pred eeeeccCCCchhhhhccccCCCCCCChhhhHHHHHHHHHHHHHHCCcccCcccCCCccccc-CCCeEEEeCCCccccHHH
Q 003283 615 VYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDD-GPPYLILLHPALGLLWEV 693 (834)
Q Consensus 615 ~FsPvKn~~~sa~k~~~~~~~~~~~sp~ta~~dl~~~~~~~L~~aG~~v~~~~~~~~~~~~-~P~~~I~L~P~~~~~~~~ 693 (834)
+|+||||+. +. .+++..-+.+.+.......... ...++|.|++. ++++++
T Consensus 338 rF~PvKn~~-dL---------------------------l~~~Sd~y~~~~~~~~~~~~~~~~~~p~i~lg~~-f~~v~~ 388 (420)
T PF01704_consen 338 RFAPVKNTS-DL---------------------------LLVRSDLYDLDDGTLVRNPLRAFHTRPLIKLGDH-FKKVDD 388 (420)
T ss_dssp G--B-SSHH-HH---------------------------HHHHSTTEEEETTEEEEHCCHCSSCHHEEEECGG-GSSHHH
T ss_pred HcCCccccC-cc---------------------------eeeccceeccccceeeecccccCCCCCeeccCcc-cCchHH
Confidence 999999943 21 1122221222211100000111 12336999987 578999
Q ss_pred HhcccCC-CCCCCCcEEEEEeceEEeeceEEE
Q 003283 694 TRQKFKG-GSVSKGSELQIEVAEFLWRNVQLD 724 (834)
Q Consensus 694 ~~~k~~~-gsi~~~S~L~VeG~~~f~~~v~ld 724 (834)
+.+||+. +||.++++|+|.|+++|++||.|+
T Consensus 389 ~~~r~~~ip~l~~~~~l~v~gdv~fg~~v~lk 420 (420)
T PF01704_consen 389 FEKRFPSIPSLLELDSLTVSGDVTFGKNVVLK 420 (420)
T ss_dssp HHHHBSSS-BETTEEEEEEESSEEE-TT-EEE
T ss_pred hhhhcCCCCCcccCCcceEecceEECCCcEeC
Confidence 9999998 799999999999999999999985
No 8
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=100.00 E-value=1.2e-71 Score=604.95 Aligned_cols=315 Identities=23% Similarity=0.313 Sum_probs=285.3
Q ss_pred HHHHHhhhccC--cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEE
Q 003283 277 QAALWGIEGLP--ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAI 354 (834)
Q Consensus 277 ~~~~~Gle~L~--kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~I 354 (834)
+|++.|+++|+ ++|+|+||||+|||||+++||+ ++||+.+ +++||||+++++|++++.++.+.+|+++.|||+|
T Consensus 2 ~~~~~G~~~i~~~~va~viLaGG~GTRLg~~~PK~--l~pv~~~--~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~i 77 (323)
T cd04193 2 EWEEAGLKAIAEGKVAVLLLAGGQGTRLGFDGPKG--MFPVGLP--SKKSLFQLQAERILKLQELAGEASGKKVPIPWYI 77 (323)
T ss_pred hHHHHhHHHHhcCCEEEEEECCCcccccCCCCCeE--EEEecCC--CCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEE
Confidence 47789999999 9999999999999999999999 9999866 8999999999999999999988888889999999
Q ss_pred ecCCCCCchHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHH
Q 003283 355 MTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHD 434 (834)
Q Consensus 355 MTS~~~~Th~~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~ 434 (834)
|||+ +||++|++||++|+|||+++++|++|+|+++||++ .+|+++++++++++|+|+||||||.+|+++|+|++|++
T Consensus 78 mtS~--~t~~~t~~~~~~~~~fGl~~~~i~~f~Q~~~P~~~-~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~ 154 (323)
T cd04193 78 MTSE--ATHEETRKFFKENNYFGLDPEQVHFFQQGMLPCVD-FDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKK 154 (323)
T ss_pred EcCh--hHhHHHHHHHHhCCcCCCCCceEEEEecCceeeEc-CCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHh
Confidence 9998 69999999999999999999999999999999998 78999999999999999999999999999999999999
Q ss_pred cCceEEEEEeCCCCcccc-cHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCcc
Q 003283 435 NGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKF 513 (834)
Q Consensus 435 ~Gikyi~v~~vDN~La~v-DP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~ 513 (834)
+|+||++|+||||+|+++ ||.| +|+++.++.++.+++ ++|+.++|+||++|. .||+ +++|||+|+|++
T Consensus 155 ~G~~yi~v~~vDN~L~~~~Dp~~---lG~~~~~~~~~~~kv-v~k~~~~ekvG~l~~---~~g~----~~vvEysel~~~ 223 (323)
T cd04193 155 RGIKYIHVYSVDNILVKVADPVF---IGFCISKGADVGAKV-VRKRYPTEKVGVVVL---VDGK----PQVVEYSEISDE 223 (323)
T ss_pred CCCEEEEEEecCcccccccCHHH---hHHHHHcCCceEEEE-EECCCCCCceeEEEE---ECCe----EEEEEeecCCHH
Confidence 999999999999999987 9966 899999999999997 667779999999998 6999 899999999999
Q ss_pred CCCCCCCCCCCccccCcc-ceeeeEEeHHHHHhhhcccccCCccccccccCCCcceecCCCCc---cccCcceeccchhh
Q 003283 514 GITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDT---HSVPGGRLECTMQN 589 (834)
Q Consensus 514 ~~~~~~~~dg~l~s~f~~-Ninnl~fsL~~L~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~---~~~~p~rLE~~Mqd 589 (834)
. .+...++|.+. |.. |||+|||+++||+++++. ....||+|++. |||||+|..|.. ..++++|||+||+|
T Consensus 224 ~-~~~~~~~g~l~--f~~~ni~~~~fsl~fl~~~~~~-~~~~l~~h~a~--Kki~~~d~~~~~~~p~~~n~~klE~fifd 297 (323)
T cd04193 224 L-AEKRDADGELQ--YNAGNIANHFFSLDFLEKAAEM-EEPSLPYHIAK--KKIPYVDLEGGLVKPDEPNGIKLELFIFD 297 (323)
T ss_pred H-HhccCcCCcEe--cccchHhhheeCHHHHHHHHhh-ccccCCceEec--cccCcccCcCcEeccCCCcEEEeHHHHHH
Confidence 6 34445567764 655 999999999999999875 44579999988 999999976543 23467999999998
Q ss_pred hhhhhccccccccccceeeecccceeeeeccCCC
Q 003283 590 IADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVT 623 (834)
Q Consensus 590 i~~~F~~~y~~~~~~~~f~~~~R~~~FsPvKn~~ 623 (834)
++..|+ ++...+++|..+|+||||++
T Consensus 298 ~~~~~~--------~~~~~eV~R~~~F~PvKn~~ 323 (323)
T cd04193 298 VFPFAK--------NFVCLEVDREEEFSPLKNAD 323 (323)
T ss_pred HHHhCC--------ceEEEEEChhhccccCcCCC
Confidence 888764 56678899999999999964
No 9
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=100.00 E-value=1.8e-68 Score=573.35 Aligned_cols=284 Identities=20% Similarity=0.234 Sum_probs=250.7
Q ss_pred cCcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHH
Q 003283 286 LPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 365 (834)
Q Consensus 286 L~kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~ 365 (834)
|+|+|||+||||||||||+++||| +|||. +|+||||++++||++++ +.+| +.||||||||+ +||++
T Consensus 1 l~kvavl~LaGG~GTRLG~~~pKg--~~~v~----~~~s~l~l~~~~i~~l~----~~~~--~~iPl~iMtS~--~T~~~ 66 (300)
T cd00897 1 LNKLVVLKLNGGLGTSMGCTGPKS--LIEVR----DGKTFLDLTVQQIEHLN----KTYG--VDVPLVLMNSF--NTDED 66 (300)
T ss_pred CCcEEEEEecCCcccccCCCCCce--eeecC----CCCcHHHHHHHHHHHHH----HHcC--CCceEEEECCC--cchHH
Confidence 579999999999999999999999 99993 99999999999999999 4677 89999999999 79999
Q ss_pred HHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCccccc---CCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEE
Q 003283 366 ITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVM---RPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATV 442 (834)
Q Consensus 366 T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~---~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v 442 (834)
|++||++|++ +++||++|+|+++||++ .+|+++++ ++++++|+|+||||+|.+|++||+||+|+++|+||++|
T Consensus 67 T~~~l~~~~~---~~~~v~~F~Q~~~P~~~-~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v 142 (300)
T cd00897 67 TKKILKKYAG---VNVDIHTFNQSRYPRIS-KETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFV 142 (300)
T ss_pred HHHHHHHcCC---CccCeEEEecCCcccCc-cccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEE
Confidence 9999999886 78999999999999999 57888887 88999999999999999999999999999999999999
Q ss_pred EeCCCCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCC
Q 003283 443 RQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSS 522 (834)
Q Consensus 443 ~~vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~d 522 (834)
+||||+++.+||.| +||++.+++++.+++ ++|+.++|+||++|. .||+ +++|||+|+|++...+. +
T Consensus 143 ~nvDNL~a~~Dp~~---lg~~~~~~~~~~~ev-v~Kt~~dek~G~l~~---~~g~----~~vvEyse~p~e~~~~~---~ 208 (300)
T cd00897 143 SNIDNLGATVDLRI---LNHMVDNKAEYIMEV-TDKTRADVKGGTLIQ---YEGK----LRLLEIAQVPKEHVDEF---K 208 (300)
T ss_pred EecccccccCCHHH---HHHHHhcCCceEEEE-eecCCCCCcccEEEE---ECCE----EEEEEeccCCHHHHHhh---c
Confidence 99999766669966 899999999999996 778889999999997 7999 99999999999852211 2
Q ss_pred CCccccCcc-ceeeeEEeHHHHHhhhcccccCCccccccccCCCcceecCCCCccccCcceeccchhhhhhhhccccccc
Q 003283 523 NGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSR 601 (834)
Q Consensus 523 g~l~s~f~~-Ninnl~fsL~~L~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~~~~~p~rLE~~Mqdi~~~F~~~y~~~ 601 (834)
+.+ .|+. |||||||++++|+++++. ....||+|++. |+|+. + ++++|||++|+|++..|+
T Consensus 209 ~~~--~~~~~nt~n~~~~l~~L~~~~~~-~~~~lp~h~~~--K~v~p---~-----~~~~qlE~~i~da~~~~~------ 269 (300)
T cd00897 209 SIK--KFKIFNTNNLWVNLKAVKRVVEE-NALDLEIIVNP--KTVDG---G-----LNVIQLETAVGAAIKNFD------ 269 (300)
T ss_pred Ccc--cceEEEEeEEEEEHHHHHHHHHh-ccCCCCeeecc--cccCC---C-----CCEEEeHhHhhhHHHhCC------
Confidence 333 4987 999999999999999875 44569999977 77642 1 478999999999998885
Q ss_pred cccceeeecccceeeeeccCCC
Q 003283 602 CYKGVEDDLDTFMVYNERRRVT 623 (834)
Q Consensus 602 ~~~~~f~~~~R~~~FsPvKn~~ 623 (834)
.+.+.+++|. .|+||||..
T Consensus 270 --~~~~~eV~R~-rF~PvKn~~ 288 (300)
T cd00897 270 --NALGVNVPRS-RFLPVKTTS 288 (300)
T ss_pred --CcEEEEEChh-hcCCCCChH
Confidence 3345778887 599999955
No 10
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-64 Score=546.17 Aligned_cols=439 Identities=20% Similarity=0.230 Sum_probs=346.8
Q ss_pred hhhhhhHHHHHHHHHhhhhccccCCCccccccccchhhHHHHHHHHHHHHHHhccccCcchhHHHHHHHHHHHHcccccc
Q 003283 162 EARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFER 241 (834)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~Ll~qL~~ld~~y~~~ggl~~y~~~a~~ll~~s~~~~ 241 (834)
.+.+.||++|.+|++..+. .++..|-.++.. |+....+.|.+...
T Consensus 26 ~~~s~mk~~l~~l~~~~~~--------------------~~k~~~~~e~~~-------------F~~Lf~RyL~~~~~-- 70 (498)
T KOG2638|consen 26 EALSQMKNELDKLLSTSEP--------------------EDKNHFKTELSG-------------FFNLFSRYLREKAP-- 70 (498)
T ss_pred HHHHHHHHHHHhccccCch--------------------hhhhcchhhHHH-------------HHHHHHHHHhccCC--
Confidence 5779999999999998662 256666554433 33444555654310
Q ss_pred ccccccccccccccccccc-cCCCCcccCCChHHHHHHHHHhhhccCcEEEEEecCCccccCCCCCCCCCceeeccccCC
Q 003283 242 KTTKSQHVHESMECQFLEI-HVPSGLDLSQNTEYAAQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPY 320 (834)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~-~vP~g~~l~~~~~~~~~~~~~Gle~L~kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~ 320 (834)
. ..|+.+ ++|++....+++- ... ..+.+.|.|+|||+|+||+||.|||.+||+ +++|+
T Consensus 71 ~------------~~wdkI~~p~~d~vv~y~~i--~~~-~~~~~~L~KLavlKLNGGlGttmGc~gPKS--~ieVR---- 129 (498)
T KOG2638|consen 71 T------------IDWDKIRPPPEDAVVPYDDI--KNV-ELSKSLLNKLAVLKLNGGLGTTMGCKGPKS--VIEVR---- 129 (498)
T ss_pred c------------cchhhccCCChhhccccccc--cch-hhHHHhhhheEEEEecCCcCCccccCCCce--eEEEc----
Confidence 1 234444 4444544444331 112 567788999999999999999999999999 99996
Q ss_pred CCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCc
Q 003283 321 CGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQ 400 (834)
Q Consensus 321 sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgk 400 (834)
+|.||||+.++||+.|+ ++|+ +++||++|||+ +|+++|.+++++|.++ +.+|+.|.|+++|.++.++.-
T Consensus 130 ~g~tFLDL~V~QIe~LN----~~Y~--~dVPlvLMNSf--nTdedT~kil~ky~~~---kv~i~TF~QS~~PRi~~etlL 198 (498)
T KOG2638|consen 130 DGLTFLDLTVRQIENLN----KTYN--VDVPLVLMNSF--NTDEDTQKILKKYAGS---KVDIKTFNQSKYPRIDKETLL 198 (498)
T ss_pred CCCchhHHHHHHHHHHH----hhcC--CCCCEEEeccc--ccchHHHHHHHHhcCC---ceeEEEeccccCCcccccccc
Confidence 99999999999999998 7888 89999999999 8999999999999875 568999999999999976654
Q ss_pred cccc---CCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCCcccccHhHHHHhhhhhhcCCceeEEEeee
Q 003283 401 WLVM---RPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKR 477 (834)
Q Consensus 401 i~l~---~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvR 477 (834)
++.. +...-+|+||||||+|.+|+.||+||+|+++|++|+||+|+||++|.+|..| +.+.+..+.+|.|++ +.
T Consensus 199 Pv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL~I---Ln~~i~~~~ey~MEv-Td 274 (498)
T KOG2638|consen 199 PVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDLNI---LNHVINNNIEYLMEV-TD 274 (498)
T ss_pred CCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeHHH---HHHHhcCCCceEEEe-cc
Confidence 4443 4456799999999999999999999999999999999999999999999988 688889999999996 77
Q ss_pred cCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCccccCcc-ceeeeEEeHHHHHhhhcccccCCcc
Q 003283 478 SSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENERSLP 556 (834)
Q Consensus 478 K~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s~f~~-Ninnl~fsL~~L~~vl~~~~~~~Lp 556 (834)
|+.+|.|+|+|+. .+|+ ++++||+|+|++.. +++...+.|.. ||||+|++|.++++++++ ..-.|+
T Consensus 275 KT~aDvKgGtLi~---y~G~----lrlLEiaQVP~ehv-----~eFkS~kkFkifNTNNlWinLkavKrlve~-~~l~me 341 (498)
T KOG2638|consen 275 KTRADVKGGTLIQ---YEGK----LRLLEIAQVPKEHV-----DEFKSIKKFKIFNTNNLWINLKAVKKLVEE-NALNME 341 (498)
T ss_pred cchhhcccceEEe---ecCE----EEEEEeccCChhHh-----hhhccceeEEEeccCCeEEehHHHHHHhhc-Ccccce
Confidence 8889999999998 8999 99999999999963 46677788998 999999999999999986 444454
Q ss_pred ccccccCCCcceecCCCCccccCcceeccchhhhhhhhccccccccccceeeecccceeeeeccCCCchhhhhccccCCC
Q 003283 557 GMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMS 636 (834)
Q Consensus 557 ~hIanpKKkIpy~D~~g~~~~~~p~rLE~~Mqdi~~~F~~~y~~~~~~~~f~~~~R~~~FsPvKn~~~sa~k~~~~~~~~ 636 (834)
.|.|+| ++|. + ..++||||+.+++++.|++ +..+-+.++|| -|||+.. +.+-. .
T Consensus 342 -Ii~N~k----ti~~-~----~~viQleTa~GaaIk~F~n------a~gv~VpRsRF---lPVKt~s-DLlLv-~----- 395 (498)
T KOG2638|consen 342 -IIVNPK----TIDR-G----IEVIQLETAAGAAIKFFDN------AIGVNVPRSRF---LPVKTCS-DLLLV-M----- 395 (498)
T ss_pred -eecChh----hccC-C----ceEEEEhhhhhHHHHhCCC------ceeeecccccc---ccccccc-cceee-e-----
Confidence 677977 6663 2 2689999999999999984 33333555665 7999943 32100 0
Q ss_pred CCCChhhhHHHHHHHHHHHHHHCC-cccCcccCCCccccc-CCCeEEEeCCCccccHHHHhcccCC-CCCCCCcEEEEEe
Q 003283 637 LHQTPDGSFLDILRNAYDILCQCH-IKLPEIEGNDKYIDD-GPPYLILLHPALGLLWEVTRQKFKG-GSVSKGSELQIEV 713 (834)
Q Consensus 637 ~~~sp~ta~~dl~~~~~~~L~~aG-~~v~~~~~~~~~~~~-~P~~~I~L~P~~~~~~~~~~~k~~~-gsi~~~S~L~VeG 713 (834)
.+||.. ..| .++. ..+. +|.++|.|+++ +.++++|..||++ ++|.++++|+|.|
T Consensus 396 ---------S~Ly~l------d~Gsl~l~-------~~r~~~t~P~vkLg~~-F~kv~~f~~rfp~iP~ileLdhLtVsG 452 (498)
T KOG2638|consen 396 ---------SNLYDL------DNGSLTLS-------PSRFGPTPPLVKLGSE-FKKVEDFLGRFPGIPDILELDHLTVSG 452 (498)
T ss_pred ---------cceeec------cCCeEEec-------hhhcCCCCCeeecchh-hhHHHHHHhcCCCCCccceeceEEEec
Confidence 011111 111 1111 1122 24447999999 7788999999999 7999999999999
Q ss_pred ceEEeeceEEEEEEEEEecC
Q 003283 714 AEFLWRNVQLDGSLIIVAEN 733 (834)
Q Consensus 714 ~~~f~~~v~ldGslvI~a~~ 733 (834)
+++|++||.|+|+|+|.|++
T Consensus 453 dV~FGknV~LkGtViIia~~ 472 (498)
T KOG2638|consen 453 DVWFGKNVSLKGTVIIIANE 472 (498)
T ss_pred cEEeccceEEeeEEEEEecC
Confidence 99999999999999999984
No 11
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-60 Score=529.31 Aligned_cols=414 Identities=21% Similarity=0.234 Sum_probs=307.7
Q ss_pred cHHHHHHHHHHcCCccccccCccchhhhhhhhhHHHHHHHHHhhhhccccCCCccccccccchhhHHHHHHHHHHHHHHh
Q 003283 135 DQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIE 214 (834)
Q Consensus 135 ~~~~l~~~L~~~gQ~Hll~~~~~w~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~Ll~qL~~ld 214 (834)
+.......|.+..|+|+|.. |.. +++. +..+..+++..+|
T Consensus 14 ~f~~~~~~l~~~~~~h~l~~---l~~----------------------------------~s~~---~~~~~~~~~~~~d 53 (472)
T COG4284 14 KFNSDAVSLAASQQEHLLDK---LKQ----------------------------------SSEK---QALKSFEKLLLLD 53 (472)
T ss_pred hhhcchhhhhHHHHHHHHHH---hhh----------------------------------hchH---HHHhhhhhhhhhH
Confidence 45567788889999999999 655 4442 5566667777777
Q ss_pred ccccCcchhHHHHHHHHHHHHccccccccccccccccccccccccccCCCCcccCCChHHHHHHHHHhhhc--cCcEEEE
Q 003283 215 QFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEIHVPSGLDLSQNTEYAAQAALWGIEG--LPELGEI 292 (834)
Q Consensus 215 ~~y~~~ggl~~y~~~a~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~~vP~g~~l~~~~~~~~~~~~~Gle~--L~kvavV 292 (834)
.+++ +++ +-++..+.+ . ...++.+..|.-......+.... +.||+.. ++|+|||
T Consensus 54 ~~f~-------l~~--~~ll~~s~~---s----------~~~~~ki~~~~~d~~~~~~~~~~--~~~~l~~~~~~klAvl 109 (472)
T COG4284 54 IFFF-------LFS--RYLLNTSKA---S----------TQEWDKIRPPNPDDVVDYEKKIL--EGWGLLKIKLGKLAVL 109 (472)
T ss_pred HHHH-------HHH--HHHhhcCcc---c----------ceeecccCCCChhhhccchhhcc--chhhhhhhhcCceEEE
Confidence 7552 222 223332211 1 01233334443212211111112 2346666 6799999
Q ss_pred EecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHHHHH
Q 003283 293 YPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCER 372 (834)
Q Consensus 293 lLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~~fle~ 372 (834)
+||||||||||+++||| +++|+ +|+||||+++|||+.++ .+|+ ++||||||||. |+++|..||+.
T Consensus 110 ~LaGGqGtrlG~~gPKg--l~~V~----~gks~~dl~~~qIk~ln----~~~~--~~vP~~iMtS~---nt~~t~s~f~~ 174 (472)
T COG4284 110 KLAGGQGTRLGCDGPKG--LFEVK----DGKSLFDLQAEQIKYLN----RQYN--VDVPLYIMTSL---NTEETDSYFKS 174 (472)
T ss_pred EecCCcccccccCCCce--eEEec----CCCcHHHHHHHHHHHHH----HHhC--CCCCEEEEecC---CcHHHHHHHhh
Confidence 99999999999999999 99997 89999999999999999 5677 89999999996 99999999999
Q ss_pred hCCCCCCCCceEEEecCCeeeEecCCCcccccCCCC-ccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCCccc
Q 003283 373 LRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFA-PVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAA 451 (834)
Q Consensus 373 n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~-i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~La~ 451 (834)
++|||+++++|.||+|+.+||+...+|++++.+.++ ++|.|+||||+|.+|+.||++++|.++|++|++|+||||+++.
T Consensus 175 ~~Y~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~ 254 (472)
T COG4284 175 NDYFGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGAT 254 (472)
T ss_pred hhhcCCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccc
Confidence 999999999999999999996666899999976666 9999999999999999999999999999999999999995555
Q ss_pred ccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCccccCcc
Q 003283 452 TDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA 531 (834)
Q Consensus 452 vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s~f~~ 531 (834)
+||.| +|+++..+.++.|++ ++|+.|+|+||+|+. .||+ ++++||+|+|++. +++-..++.+. .|.+
T Consensus 255 vD~~~---lg~~~~~~~e~~~e~-t~Kt~a~ekvG~Lv~---~~g~----~rllEysev~~~~-~~~~~s~~~~~-~~n~ 321 (472)
T COG4284 255 VDLKF---LGFMAETNYEYLMET-TDKTKADEKVGILVT---YDGK----LRLLEYSEVPNEH-REEFTSDGKLK-YFNT 321 (472)
T ss_pred cCHHH---HHHHHhcCcceeEEE-eecccccccceEEEE---eCCc----eEEEEEecCChhH-hhhhcccccee-eecc
Confidence 69976 899999999999997 888889999999997 8999 9999999999985 33333344332 2444
Q ss_pred c-eeeeEEeHHHHHhhhcccccCCccccccccCCCcceecCC---CCccccCcceeccchhhh-hhhhccccccccccce
Q 003283 532 N-TNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNF---GDTHSVPGGRLECTMQNI-ADNFLNTYSSRCYKGV 606 (834)
Q Consensus 532 N-innl~fsL~~L~~vl~~~~~~~Lp~hIanpKKkIpy~D~~---g~~~~~~p~rLE~~Mqdi-~~~F~~~y~~~~~~~~ 606 (834)
| |.+|++.+++|.+.. .-.||.|.++ ||||+.|.. .+..-+...++|. -+| +|+|. |. ....++
T Consensus 322 Nni~l~~~~~~~l~~~~----~l~Lpi~~a~--Kki~~~~~~~~~~t~i~~~i~kfe~--~FI~fDlF~--~~-s~~~~~ 390 (472)
T COG4284 322 NNIWLHLFSVKFLKEAA----YLNLPIHKAI--KKIPQLDNIIQLTTAIGKNISKFEN--EFIPFDLFL--YK-SDENGG 390 (472)
T ss_pred ccceeehhHHHHHHhhh----ccCCcchhhh--cccCccccceeeccccccchhhccc--cccceeeeE--EE-ecCCCc
Confidence 3 666666666666654 3579999999 999999821 1112234567884 135 67775 22 235677
Q ss_pred eeecccceeeeeccCCCchhhhhccccCCCCCCChhhhHHHHHHHHHHHHHHCCccc
Q 003283 607 EDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKL 663 (834)
Q Consensus 607 f~~~~R~~~FsPvKn~~~sa~k~~~~~~~~~~~sp~ta~~dl~~~~~~~L~~aG~~v 663 (834)
+..+||+-+|+|+||-.++. -++++++..++.+... |+...+..+
T Consensus 391 ~~~vpR~~~f~Plkn~~~~~-----------~~~~~~~~~~~~~~~~-~~e~~~~~i 435 (472)
T COG4284 391 LLLVPRFGEFSPLKNLEGSH-----------FDNVETFTCGIPRIPL-ILELEGLTI 435 (472)
T ss_pred eEeccccCCCCchhhccCCC-----------CCcHHhhhcccccccc-hhhhcccee
Confidence 88899999999999977663 1256666555444433 555555544
No 12
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=100.00 E-value=1.3e-56 Score=475.80 Aligned_cols=235 Identities=19% Similarity=0.200 Sum_probs=207.5
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHH
Q 003283 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (834)
Q Consensus 289 vavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~~ 368 (834)
+|+|+||||+|||||++.||+ ++||+++ +|+||||+++++|++++.++. .| +.|||+||||+ +||+.|++
T Consensus 1 va~viLaGG~GtRLg~~~PK~--~~~i~~~--~gk~~l~~~~~~i~~~~~~~~--~~--~~Ip~~imts~--~t~~~t~~ 70 (266)
T cd04180 1 VAVVLLAGGLGTRLGKDGPKS--STDVGLP--SGQCFLQLIGEKILTLQEIDL--YS--CKIPEQLMNSK--YTHEKTQC 70 (266)
T ss_pred CEEEEECCCCccccCCCCCce--eeeecCC--CCCcHHHHHHHHHHHHHHHhh--cC--CCCCEEEEcCc--hhHHHHHH
Confidence 689999999999999999999 9999876 999999999999999996552 24 78999999999 79999999
Q ss_pred HHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCC
Q 003283 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (834)
Q Consensus 369 fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~ 448 (834)
||++|+ ++.++|++|+|+++||++ .+|.+.++++++++|+|+||||||.+|+.+|+|++|+++|++|++|+|+||+
T Consensus 71 ~l~~~~---~~~~~v~~f~Q~~~P~~~-~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~ 146 (266)
T cd04180 71 YFEKIN---QKNSYVITFMQGKLPLKN-DDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNL 146 (266)
T ss_pred HHHHcC---CCCCceEEEEeCCceEEe-CCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCcc
Confidence 999998 578999999999999999 4577778888999999999999999999999999999999999999999999
Q ss_pred cccc-cHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCC-CccccceEEEEecccCccCCCC----CCCCC
Q 003283 449 VAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLD-GKWAYGLSCIEYTEFDKFGITR----GPFSS 522 (834)
Q Consensus 449 La~v-DP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~d-Gk~~~~~~vVEYsEl~~~~~~~----~~~~d 522 (834)
|+++ ||.+ +|+++..+.++.+++ ++|+.++|++|++|. .+ |+ +++|||+|+|++.... ++.++
T Consensus 147 la~v~DP~~---lG~~~~~~~~~~~kv-v~K~~~d~k~G~~~~---~~~g~----~~~vEyse~~~~~~~~~~~~~~~~~ 215 (266)
T cd04180 147 LVKVADPLF---IGIAIQNRKAINQKV-VPKTRNEESGGYRIA---NINGR----VQLLEYDQIKKLLKQKMVNNQIPKD 215 (266)
T ss_pred CccccCHHH---HHHHHHcCCCEEEEE-EECCCCCCeEEEEEE---ecCCC----EEEEEeccCCHHHHhccccccCcCC
Confidence 9999 9976 899999999999997 666779999999997 55 88 9999999999985222 11122
Q ss_pred CCccccCccceeeeEEeHHHHHhhhc
Q 003283 523 NGLQADFPANTNILYVDLASAELVGS 548 (834)
Q Consensus 523 g~l~s~f~~Ninnl~fsL~~L~~vl~ 548 (834)
....+.+++|||||||+|++|+++++
T Consensus 216 ~~~~~~~~~n~~~~~~~l~~l~~~~~ 241 (266)
T cd04180 216 IDDAPFFLFNTNNLINFLVEFKDRVD 241 (266)
T ss_pred CCceeeccceEEEEEEEHHHHHHHHH
Confidence 23344567799999999999999874
No 13
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=97.99 E-value=0.00089 Score=75.91 Aligned_cols=187 Identities=13% Similarity=0.093 Sum_probs=128.9
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
.+.+|+||-|+||||-++-||. +=|+ .||+.++..++.+..+. .=-+++..+. -.+..+
T Consensus 2 ~~~~vILAAGkGTRMkS~lPKV--LH~v-----aGkpMl~hVi~~a~~l~-----------~~~i~vVvGh---~ae~V~ 60 (460)
T COG1207 2 SLSAVILAAGKGTRMKSDLPKV--LHPV-----AGKPMLEHVIDAARALG-----------PDDIVVVVGH---GAEQVR 60 (460)
T ss_pred CceEEEEecCCCccccCCCccc--chhc-----cCccHHHHHHHHHhhcC-----------cceEEEEEcC---CHHHHH
Confidence 4678999999999999999999 7666 89999999999988764 1122333443 567777
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCce-EEEEEeCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRK-GATVRQVS 446 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gik-yi~v~~vD 446 (834)
+-+.+.. ++.|+.|.. -+ -+|+-++. ....+..+++ .+.|.+-|
T Consensus 61 ~~~~~~~-------~v~~v~Q~e--ql--GTgHAV~~------------------------a~~~l~~~~~g~vLVl~GD 105 (460)
T COG1207 61 EALAERD-------DVEFVLQEE--QL--GTGHAVLQ------------------------ALPALADDYDGDVLVLYGD 105 (460)
T ss_pred HHhcccc-------CceEEEecc--cC--ChHHHHHh------------------------hhhhhhcCCCCcEEEEeCC
Confidence 7776532 577888876 11 23432221 1233445555 78899999
Q ss_pred CCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcc
Q 003283 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (834)
Q Consensus 447 N~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (834)
=+|...+. +-.++......+++....+ .+-++| .+-|.+++ +.+|+ ...+||.-+.+++.. .+
T Consensus 106 ~PLit~~T-L~~L~~~~~~~~~~~tvLt-~~~~dP-~GYGRIvr--~~~g~---V~~IVE~KDA~~eek---------~I 168 (460)
T COG1207 106 VPLITAET-LEELLAAHPAHGAAATVLT-AELDDP-TGYGRIVR--DGNGE---VTAIVEEKDASEEEK---------QI 168 (460)
T ss_pred cccCCHHH-HHHHHHhhhhcCCceEEEE-EEcCCC-CCcceEEE--cCCCc---EEEEEEcCCCCHHHh---------cC
Confidence 99998753 3246777777778887776 444444 36678876 35666 377999888777741 11
Q ss_pred ccCccceeeeEEeHHHHHhhhcc
Q 003283 527 ADFPANTNILYVDLASAELVGSS 549 (834)
Q Consensus 527 s~f~~Ninnl~fsL~~L~~vl~~ 549 (834)
--.|+..+.|+-..|.+.|.+
T Consensus 169 --~eiNtGiy~f~~~~L~~~L~~ 189 (460)
T COG1207 169 --KEINTGIYAFDGAALLRALPK 189 (460)
T ss_pred --cEEeeeEEEEcHHHHHHHHHH
Confidence 223999999999999998864
No 14
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.61 E-value=0.0028 Score=70.80 Aligned_cols=196 Identities=11% Similarity=0.104 Sum_probs=115.1
Q ss_pred CcEEEEEecCCccccCCC---CCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCc
Q 003283 287 PELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN 362 (834)
Q Consensus 287 ~kvavVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~T 362 (834)
+++-.|+||||.||||.- +.||. ++|+ .|+ +++|++++++... | .--++|.|.. .
T Consensus 2 ~~m~avILAaG~GtRl~plT~~~PK~--llpv-----~gk~pli~~~l~~l~~~--------G---i~~i~iv~~~---~ 60 (380)
T PRK05293 2 KEMLAMILAGGQGTRLGKLTKNIAKP--AVPF-----GGKYRIIDFTLSNCANS--------G---IDTVGVLTQY---Q 60 (380)
T ss_pred CcEEEEEECCCCCcccchhhcCCccc--eeee-----CCceeehhHHHHHHHhC--------C---CCEEEEEecC---C
Confidence 357789999999999996 78999 9998 688 7999999988653 4 2256888876 7
Q ss_pred hHHHHHHHHHhCCCCCCCCc--eEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceE
Q 003283 363 HERITSLCERLRWFGRGQSS--FQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKG 439 (834)
Q Consensus 363 h~~T~~fle~n~yFGl~~~q--V~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Giky 439 (834)
.+..+++|.+...|+++..+ +.+ .| |... .+ -.-.|-|.|+ ++.++. .+....-++
T Consensus 61 ~~~i~~~~~~~~~~~~~~~~~~~~i-~~---~~~~-~~----------~~~~~~Gta~al~~a~~------~l~~~~~~~ 119 (380)
T PRK05293 61 PLELNNHIGIGSPWDLDRINGGVTI-LP---PYSE-SE----------GGKWYKGTAHAIYQNID------YIDQYDPEY 119 (380)
T ss_pred HHHHHHHHhCCCcccccCCCCCEEE-eC---Cccc-CC----------CCcccCCcHHHHHHHHH------HHHhCCCCE
Confidence 88899999876666664321 211 11 0010 00 0011346544 333332 232222368
Q ss_pred EEEEeCCCCcccccHhHHHHhhhhhhcCCceeEEEeeecC-CCCcCceEEEEeecCCCccccceEEEEecccCccCCCCC
Q 003283 440 ATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRG 518 (834)
Q Consensus 440 i~v~~vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~-~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~ 518 (834)
+.|.+.|++ ...| +..++-.+...++++.+.+ .+.+ ....+-|++.. ..+|+ ++++.|=|...
T Consensus 120 ~lV~~gD~l-~~~d--~~~ll~~h~~~~~~~tl~~-~~~~~~~~~~yG~v~~--d~~g~------V~~~~eKp~~~---- 183 (380)
T PRK05293 120 VLILSGDHI-YKMD--YDKMLDYHKEKEADVTIAV-IEVPWEEASRFGIMNT--DENMR------IVEFEEKPKNP---- 183 (380)
T ss_pred EEEecCCEE-EcCC--HHHHHHHHHhcCCCEEEEE-EEcchhhccccCEEEE--CCCCc------EEEEEeCCCCC----
Confidence 889999984 3333 3344555555566654443 2222 12335677753 13444 44444433210
Q ss_pred CCCCCCccccCccceeeeEEeHHHHHhhhc
Q 003283 519 PFSSNGLQADFPANTNILYVDLASAELVGS 548 (834)
Q Consensus 519 ~~~dg~l~s~f~~Ninnl~fsL~~L~~vl~ 548 (834)
. . ...|+..++|+-+.+.+.+.
T Consensus 184 ---~-~----~~~~~Giyi~~~~~l~~~l~ 205 (380)
T PRK05293 184 ---K-S----NLASMGIYIFNWKRLKEYLI 205 (380)
T ss_pred ---C-c----ceeeeEEEEEcHHHHHHHHH
Confidence 0 0 12499999999888877664
No 15
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.53 E-value=0.0034 Score=72.66 Aligned_cols=186 Identities=13% Similarity=0.135 Sum_probs=108.1
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
.++.|+||||.||||+...||. ++|+ .|+++++..++++.+. | .-.++|.++. ..+.+.
T Consensus 4 ~~~avILAaG~gtRm~~~~pK~--llpi-----~gkpli~~~l~~l~~~--------g---~~~iivvv~~---~~~~i~ 62 (482)
T PRK14352 4 PTAVIVLAAGAGTRMRSDTPKV--LHTL-----AGRSMLGHVLHAAAGL--------A---PQHLVVVVGH---DRERVA 62 (482)
T ss_pred CceEEEEcCCCCCcCCCCCCce--ecee-----CCccHHHHHHHHHHhc--------C---CCcEEEEECC---CHHHHH
Confidence 5678999999999999888999 9998 7899999999988653 3 3467788876 456677
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~v~~vD 446 (834)
++++... ..+.+..| ..|.|-|+ ++.++. .+.+..-.+++|.+.|
T Consensus 63 ~~~~~~~------~~~~~~~~----------------------~~~~Gt~~si~~al~------~l~~~~~~~vlV~~gD 108 (482)
T PRK14352 63 PAVAELA------PEVDIAVQ----------------------DEQPGTGHAVQCALE------ALPADFDGTVVVTAGD 108 (482)
T ss_pred HHhhccC------CccEEEeC----------------------CCCCCcHHHHHHHHH------HhccCCCCeEEEEeCC
Confidence 7775421 01222222 12334333 555553 2222234689999999
Q ss_pred CCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcc
Q 003283 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (834)
Q Consensus 447 N~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (834)
+++...+ .+-.++-.+...+..+.+.. .+ .....+-|.+.. ..+|+ ...++|..+.++. +..
T Consensus 109 ~P~~~~~-~l~~li~~~~~~~~~~~v~~-~~-~~~p~~yg~~~~--~~~g~---V~~~~EKp~~~~~----------~~~ 170 (482)
T PRK14352 109 VPLLDGE-TLADLVATHTAEGNAVTVLT-TT-LDDPTGYGRILR--DQDGE---VTAIVEQKDATPS----------QRA 170 (482)
T ss_pred eeccCHH-HHHHHHHHHHhcCCeEEEEE-ee-cCCCCCCCEEEE--CCCCC---EEEEEECCCCCHH----------Hhh
Confidence 9865432 12223433333343333332 22 222334566543 24555 1234444332211 110
Q ss_pred ccCc-cceeeeEEeHHHHHhhhc
Q 003283 527 ADFP-ANTNILYVDLASAELVGS 548 (834)
Q Consensus 527 s~f~-~Ninnl~fsL~~L~~vl~ 548 (834)
.. .|+..++|+-+.|.+.+.
T Consensus 171 --~~~~~~Giy~f~~~~l~~~~~ 191 (482)
T PRK14352 171 --IREVNSGVYAFDAAVLRSALA 191 (482)
T ss_pred --cceEEEEEEEEEHHHHHHHHH
Confidence 11 489999999998877765
No 16
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=97.52 E-value=0.0055 Score=62.14 Aligned_cols=176 Identities=20% Similarity=0.159 Sum_probs=101.2
Q ss_pred EEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 291 vVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
.|+||||.|+||+- ..||. ++|+ .|+++++..++.+... | . -.++|.|+. ..+.+.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~--ll~i-----~g~pli~~~l~~l~~~--------g--~-~~v~vv~~~---~~~~i~ 59 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKP--LAPV-----AGRPFLEYLLEYLARQ--------G--I-SRIVLSVGY---LAEQIE 59 (223)
T ss_pred CEEecCCcccccCcccCCCCcc--ccEE-----CCcchHHHHHHHHHHC--------C--C-CEEEEEccc---CHHHHH
Confidence 37899999999974 58999 9998 6899999999887652 3 1 146677765 567788
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~v~~vD 446 (834)
+++.....+|. .+.+ .. . ..+-|.++ ++.++. .+ +-+++.+.+.|
T Consensus 60 ~~~~~~~~~~~---~~~~--------~~-~-------------~~~~G~~~~l~~a~~------~~---~~~~~lv~~~D 105 (223)
T cd06915 60 EYFGDGYRGGI---RIYY--------VI-E-------------PEPLGTGGAIKNALP------KL---PEDQFLVLNGD 105 (223)
T ss_pred HHHcCccccCc---eEEE--------EE-C-------------CCCCcchHHHHHHHh------hc---CCCCEEEEECC
Confidence 88875332332 1211 11 0 12345554 444442 12 23678888899
Q ss_pred CCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcc
Q 003283 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (834)
Q Consensus 447 N~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (834)
++. ..| +..++-.+...+.++.+.+ .+.... ..-|++.. ..+|+ ++++.+=+.. ..
T Consensus 106 ~~~-~~~--~~~~l~~~~~~~~~~~~~~-~~~~~~-~~~~~v~~--d~~~~------v~~~~ek~~~--------~~--- 161 (223)
T cd06915 106 TYF-DVD--LLALLAALRASGADATMAL-RRVPDA-SRYGNVTV--DGDGR------VIAFVEKGPG--------AA--- 161 (223)
T ss_pred ccc-CCC--HHHHHHHHHhCCCcEEEEE-EECCCC-CcceeEEE--CCCCe------EEEEEeCCCC--------CC---
Confidence 865 233 3234444444455555554 333222 33455432 13444 4445442221 00
Q ss_pred ccCccceeeeEEeHHHHHhh
Q 003283 527 ADFPANTNILYVDLASAELV 546 (834)
Q Consensus 527 s~f~~Ninnl~fsL~~L~~v 546 (834)
.+..|++..+|+-++++.+
T Consensus 162 -~~~~~~Giy~~~~~~l~~~ 180 (223)
T cd06915 162 -PGLINGGVYLLRKEILAEI 180 (223)
T ss_pred -CCcEEEEEEEECHHHHhhC
Confidence 1334899999999988664
No 17
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.51 E-value=0.0057 Score=69.41 Aligned_cols=206 Identities=14% Similarity=0.116 Sum_probs=116.6
Q ss_pred ccCcEEEEEecCCccccCC---CCCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCC
Q 003283 285 GLPELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAK 360 (834)
Q Consensus 285 ~L~kvavVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~ 360 (834)
+..++..|+||||.||||. ...||. ++|+ .|+ +++++.++.+... | .--++|.|..
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~--llPv-----~gk~plI~~~L~~l~~~--------G---i~~i~iv~~~-- 61 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKP--AVPF-----GGSYRLIDFVLSNLVNS--------G---YLRIYVLTQY-- 61 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCccc--ceee-----CCcceEhHHHHHHHHHC--------C---CCEEEEEecc--
Confidence 3457889999999999999 899999 9998 677 8999998887653 4 2346788876
Q ss_pred CchHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEE
Q 003283 361 NNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGA 440 (834)
Q Consensus 361 ~Th~~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi 440 (834)
..+...++|.+. +.+....+.++.. +|.-. . .-...|-|-|+-.... ++.+....-+++
T Consensus 62 -~~~~i~~~~~~~--~~~~~~~~~~~~~--~~~~~-~----------~~~~~~lGta~al~~a-----~~~i~~~~~~~~ 120 (407)
T PRK00844 62 -KSHSLDRHISQT--WRLSGLLGNYITP--VPAQQ-R----------LGKRWYLGSADAIYQS-----LNLIEDEDPDYV 120 (407)
T ss_pred -CHHHHHHHHHhC--cCccccCCCeEEE--CCccc-C----------CCCCcccCCHHHHHHH-----HHHHHhcCCCEE
Confidence 788899999742 2221111211110 00000 0 0011245666543322 223434344788
Q ss_pred EEEeCCCCcccccHhHHHHhhhhhhcCCceeEEEeeecC-CCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCC
Q 003283 441 TVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGP 519 (834)
Q Consensus 441 ~v~~vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~-~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~ 519 (834)
.|.+.|++. ..|. -.++-++...++++.+.+ .+.+ .....-|++.. ..+|+ +.++.|=|... ....
T Consensus 121 lv~~gD~v~-~~dl--~~l~~~h~~~~~~~ti~~-~~~~~~~~~~~Gvv~~--d~~g~------v~~~~eKp~~~-~~~~ 187 (407)
T PRK00844 121 VVFGADHVY-RMDP--RQMVDFHIESGAGVTVAA-IRVPREEASAFGVIEV--DPDGR------IRGFLEKPADP-PGLP 187 (407)
T ss_pred EEecCCEEE-cCCH--HHHHHHHHhcCCcEEEEE-EecchHHcccCCEEEE--CCCCC------EEEEEECCCCc-cccc
Confidence 899999843 3432 244566656666655554 2221 12234677754 23454 33444433321 0000
Q ss_pred CCCCCccccCccceeeeEEeHHHHHhhhc
Q 003283 520 FSSNGLQADFPANTNILYVDLASAELVGS 548 (834)
Q Consensus 520 ~~dg~l~s~f~~Ninnl~fsL~~L~~vl~ 548 (834)
...+ ..-.|+..+.|+-+.|.+.+.
T Consensus 188 ~~~~----~~~~~~Giyi~~~~~l~~~l~ 212 (407)
T PRK00844 188 DDPD----EALASMGNYVFTTDALVDALR 212 (407)
T ss_pred CCCC----CcEEEeEEEEEeHHHHHHHHH
Confidence 0001 123599999999998877664
No 18
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=97.45 E-value=0.0052 Score=63.03 Aligned_cols=181 Identities=14% Similarity=0.113 Sum_probs=102.4
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHHH
Q 003283 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLC 370 (834)
Q Consensus 291 vVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~~fl 370 (834)
.|+||||.||||+...||. ++|+ .|+++++..++++... | .-.++|.|+. .++...+++
T Consensus 1 aiIlaaG~g~R~~~~~pK~--l~~v-----~gkpli~~~i~~l~~~--------~---i~~i~iv~~~---~~~~i~~~~ 59 (229)
T cd02540 1 AVILAAGKGTRMKSDLPKV--LHPL-----AGKPMLEHVLDAARAL--------G---PDRIVVVVGH---GAEQVKKAL 59 (229)
T ss_pred CEEEeCCCCccCCCCCChh--ccee-----CCccHHHHHHHHHHhC--------C---CCeEEEEECC---CHHHHHHHh
Confidence 3789999999999878999 9998 7899999988887552 3 2356777776 467777776
Q ss_pred HHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCCCCc
Q 003283 371 ERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSNVV 449 (834)
Q Consensus 371 e~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~v~~vDN~L 449 (834)
.+ + .+.++.|. .+.|.++ ++.++. .+ +.+.+++.+.+.|+++
T Consensus 60 ~~---~-----~~~~~~~~----------------------~~~g~~~ai~~a~~------~~-~~~~~~vli~~~D~p~ 102 (229)
T cd02540 60 AN---P-----NVEFVLQE----------------------EQLGTGHAVKQALP------AL-KDFEGDVLVLYGDVPL 102 (229)
T ss_pred CC---C-----CcEEEECC----------------------CCCCCHHHHHHHHH------hh-ccCCCeEEEEeCCccc
Confidence 64 2 23333331 1234333 343332 22 2246789999999986
Q ss_pred ccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCccccC
Q 003283 450 AATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADF 529 (834)
Q Consensus 450 a~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s~f 529 (834)
...+ .+-.++-.....+.+..+.+ .+..++ ..-|.+.. ..+|+ ++++.+=+... ..+.. .+
T Consensus 103 ~~~~-~i~~l~~~~~~~~~~~~~~~-~~~~~p-~~~~~~~~--~~~~~------v~~~~ek~~~~-------~~~~~-~~ 163 (229)
T cd02540 103 ITPE-TLQRLLEAHREAGADVTVLT-AELEDP-TGYGRIIR--DGNGK------VLRIVEEKDAT-------EEEKA-IR 163 (229)
T ss_pred cCHH-HHHHHHHHHHhcCCcEEEEE-EEcCCC-CCccEEEE--cCCCC------EEEEEECCCCC-------hHHHh-hc
Confidence 5432 12122333333344444443 333333 34555543 13454 33333222111 00000 02
Q ss_pred ccceeeeEEeHHHHHhhhc
Q 003283 530 PANTNILYVDLASAELVGS 548 (834)
Q Consensus 530 ~~Ninnl~fsL~~L~~vl~ 548 (834)
..|++.++|+-+.+.+.++
T Consensus 164 ~~~~giy~~~~~~~~~~l~ 182 (229)
T cd02540 164 EVNAGIYAFDAEFLFEALP 182 (229)
T ss_pred eEEeEEEEEEHHHHHHHHH
Confidence 3499999999887777664
No 19
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=97.43 E-value=0.0046 Score=63.82 Aligned_cols=124 Identities=16% Similarity=0.160 Sum_probs=80.1
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 291 vVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
.|+||||.||||+ ...||. ++|+ .|++++++.++.+.+. | .--++|.|.. ..+.+.
T Consensus 3 aiIla~G~g~Rl~plt~~~pK~--llpi-----~g~piI~~~l~~l~~~--------G---i~~I~iv~~~---~~~~i~ 61 (217)
T cd04197 3 AVVLADSFNRRFRPLTKEKPRC--LLPL-----ANVPLIDYTLEFLALN--------G---VEEVFVFCCS---HSDQIK 61 (217)
T ss_pred EEEEcCCCcccccccccCCCce--eeEE-----CCEehHHHHHHHHHHC--------C---CCeEEEEeCC---CHHHHH
Confidence 5889999999999 588999 9998 6899999998888662 4 2246778876 678899
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (834)
++|++..++++... ...+..+. . ..+.|-|+..+.+...+.+ .+.+.+.+.|+
T Consensus 62 ~~l~~~~~~~~~~~------~~~i~~~~-~-------------~~~~~~~~al~~~~~~~~~-------~~~flv~~gD~ 114 (217)
T cd04197 62 EYIEKSKWSKPKSS------LMIVIIIM-S-------------EDCRSLGDALRDLDAKGLI-------RGDFILVSGDV 114 (217)
T ss_pred HHHhhccccccccC------cceEEEEe-C-------------CCcCccchHHHHHhhcccc-------CCCEEEEeCCe
Confidence 99998766654321 00111111 0 1234556666665544433 24566888887
Q ss_pred CcccccHhHHHHhhhhhh
Q 003283 448 VVAATDLTLLALAGIGLH 465 (834)
Q Consensus 448 ~La~vDP~~l~flG~~~~ 465 (834)
+. ..|. -.++.++..
T Consensus 115 i~-~~dl--~~~l~~h~~ 129 (217)
T cd04197 115 VS-NIDL--KEILEEHKE 129 (217)
T ss_pred ee-ccCH--HHHHHHHHH
Confidence 64 3443 244666655
No 20
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.42 E-value=0.005 Score=70.14 Aligned_cols=185 Identities=13% Similarity=0.086 Sum_probs=102.8
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHH
Q 003283 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (834)
Q Consensus 289 vavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~~ 368 (834)
++.|+||||.|||||...||. ++|+ .|+++++..++.+.+. | ....+|.+.. ..+...+
T Consensus 2 ~~~iIlAaG~gsR~~~~~pK~--ll~v-----~gkpli~~~l~~l~~~--------g---~~~iivvv~~---~~~~i~~ 60 (450)
T PRK14360 2 LAVAILAAGKGTRMKSSLPKV--LHPL-----GGKSLVERVLDSCEEL--------K---PDRRLVIVGH---QAEEVEQ 60 (450)
T ss_pred ceEEEEeCCCCccCCCCCChh--cCEE-----CChhHHHHHHHHHHhC--------C---CCeEEEEECC---CHHHHHH
Confidence 578999999999999888999 9998 7899999999888653 2 2356666665 3455666
Q ss_pred HHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCC
Q 003283 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (834)
Q Consensus 369 fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~ 448 (834)
+++++. .+.+..|. .+.|.++-+.+.. +.+. ..-.+++|...|.+
T Consensus 61 ~~~~~~-------~i~~v~~~----------------------~~~G~~~sv~~~~-----~~l~-~~~~~vlV~~~D~P 105 (450)
T PRK14360 61 SLAHLP-------GLEFVEQQ----------------------PQLGTGHAVQQLL-----PVLK-GFEGDLLVLNGDVP 105 (450)
T ss_pred HhcccC-------CeEEEEeC----------------------CcCCcHHHHHHHH-----HHhh-ccCCcEEEEeCCcc
Confidence 665321 23222211 1345444332222 2222 12246888999998
Q ss_pred cccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcccc
Q 003283 449 VAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQAD 528 (834)
Q Consensus 449 La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s~ 528 (834)
+...+ .+-.++-.....+.++.+.. .+...+. .-|.+.. ..+|+ ....+|...+.+.. ..+
T Consensus 106 ~i~~~-~l~~ll~~~~~~~~~~~~~~-~~~~~~~-~~g~~~~--d~~g~---v~~~~ek~~~~~~~-------~~~---- 166 (450)
T PRK14360 106 LLRPE-TLEALLNTHRSSNADVTLLT-ARLPNPK-GYGRVFC--DGNNL---VEQIVEDRDCTPAQ-------RQN---- 166 (450)
T ss_pred ccCHH-HHHHHHHHHHhcCCcEEEEE-EecCCCC-CccEEEE--CCCCC---EEEEEECCCCChhH-------hcC----
Confidence 75531 12122333334445544332 3333332 3455532 24554 12333332221110 001
Q ss_pred CccceeeeEEeHHHHHhhhc
Q 003283 529 FPANTNILYVDLASAELVGS 548 (834)
Q Consensus 529 f~~Ninnl~fsL~~L~~vl~ 548 (834)
...|+..++|+-+.+.+.++
T Consensus 167 ~~~~~Giy~f~~~~l~~~~~ 186 (450)
T PRK14360 167 NRINAGIYCFNWPALAEVLP 186 (450)
T ss_pred cEEEEEEEEEEHHHHHHHHh
Confidence 22588999999988887764
No 21
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=97.40 E-value=0.0072 Score=62.52 Aligned_cols=68 Identities=24% Similarity=0.402 Sum_probs=53.1
Q ss_pred EEEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHH
Q 003283 290 GEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (834)
Q Consensus 290 avVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T 366 (834)
..|+||||.||||+ ...||. ++|+ .|+++++..++.+.+. | .-.++|.|+. ..+..
T Consensus 2 ~avIlAaG~g~Rl~plt~~~pK~--l~~i-----~g~~li~~~l~~l~~~--------~---~~~i~vv~~~---~~~~~ 60 (236)
T cd04189 2 KGLILAGGKGTRLRPLTYTRPKQ--LIPV-----AGKPIIQYAIEDLREA--------G---IEDIGIVVGP---TGEEI 60 (236)
T ss_pred eEEEECCCccccccccccCCCce--eeEE-----CCcchHHHHHHHHHHC--------C---CCEEEEEcCC---CHHHH
Confidence 46889999999997 589999 9998 7899999988887542 3 1256788887 77888
Q ss_pred HHHHHHhCCCCC
Q 003283 367 TSLCERLRWFGR 378 (834)
Q Consensus 367 ~~fle~n~yFGl 378 (834)
.+++++...+|+
T Consensus 61 ~~~~~~~~~~~~ 72 (236)
T cd04189 61 KEALGDGSRFGV 72 (236)
T ss_pred HHHhcchhhcCC
Confidence 888887555554
No 22
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=97.40 E-value=0.0083 Score=60.68 Aligned_cols=177 Identities=20% Similarity=0.218 Sum_probs=104.8
Q ss_pred EEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHH
Q 003283 292 IYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (834)
Q Consensus 292 VlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~~ 368 (834)
|+||||.||||+ ...||. ++|+ .|++++++.++.+... | .-.++|.|.. ..+.+.+
T Consensus 2 iIlaaG~g~R~~~~t~~~pK~--ll~v-----~g~pli~~~l~~l~~~--------g---~~~i~vv~~~---~~~~i~~ 60 (217)
T cd04181 2 VILAAGKGTRLRPLTDTRPKP--LLPI-----AGKPILEYIIERLARA--------G---IDEIILVVGY---LGEQIEE 60 (217)
T ss_pred EEecCCccccccccccCCCcc--ccEE-----CCeeHHHHHHHHHHHC--------C---CCEEEEEecc---CHHHHHH
Confidence 789999999998 468999 9998 7899999999988653 2 2345777776 4567778
Q ss_pred HHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCC
Q 003283 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (834)
Q Consensus 369 fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~ 448 (834)
++.+...+|+ .|.+..|. .|.|.|+-..... +.+ .-+++.|...|++
T Consensus 61 ~~~~~~~~~~---~i~~~~~~----------------------~~~g~~~al~~~~-----~~~---~~~~~lv~~~D~~ 107 (217)
T cd04181 61 YFGDGSKFGV---NIEYVVQE----------------------EPLGTAGAVRNAE-----DFL---GDDDFLVVNGDVL 107 (217)
T ss_pred HHcChhhcCc---eEEEEeCC----------------------CCCccHHHHHHhh-----hhc---CCCCEEEEECCee
Confidence 8776543442 23221111 2345544333222 122 4578899999985
Q ss_pred cccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcccc
Q 003283 449 VAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQAD 528 (834)
Q Consensus 449 La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s~ 528 (834)
. ..| +..++-.+...++++.+.+ .+.. ....-|++.. ..+|+ ++++.|=+... . .
T Consensus 108 ~-~~~--~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~v~~--d~~~~------v~~~~ek~~~~-------~-----~ 162 (217)
T cd04181 108 T-DLD--LSELLRFHREKGADATIAV-KEVE-DPSRYGVVEL--DDDGR------VTRFVEKPTLP-------E-----S 162 (217)
T ss_pred c-CcC--HHHHHHHHHhcCCCEEEEE-EEcC-CCCcceEEEE--cCCCc------EEEEEECCCCC-------C-----C
Confidence 3 333 3244555555666665554 3322 3445677653 12344 45555433321 0 1
Q ss_pred CccceeeeEEeHHHHHhhhc
Q 003283 529 FPANTNILYVDLASAELVGS 548 (834)
Q Consensus 529 f~~Ninnl~fsL~~L~~vl~ 548 (834)
...|+..++|+-+.+ +.+.
T Consensus 163 ~~~~~Giy~~~~~~~-~~l~ 181 (217)
T cd04181 163 NLANAGIYIFEPEIL-DYIP 181 (217)
T ss_pred CEEEEEEEEECHHHH-Hhhh
Confidence 335999999998776 4443
No 23
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.40 E-value=0.0037 Score=71.40 Aligned_cols=184 Identities=15% Similarity=0.129 Sum_probs=104.0
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
.+..|+||||.|||||...||. ++|+ .||+++++.++.+.+. + .-.++|.++. ..+...
T Consensus 5 ~~~aiILAaG~gtR~~~~~pK~--l~~i-----~gkpli~~~l~~l~~~--------~---~~~iivv~~~---~~~~i~ 63 (456)
T PRK14356 5 TTGALILAAGKGTRMHSDKPKV--LQTL-----LGEPMLRFVYRALRPL--------F---GDNVWTVVGH---RADMVR 63 (456)
T ss_pred ceeEEEEcCCCCccCCCCCCce--eccc-----CCCcHHHHHHHHHHhc--------C---CCcEEEEECC---CHHHHH
Confidence 5778999999999999889999 9998 7999999999877542 2 1246667776 445555
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCc-HHHHHHHhcCchHHHHHcCceEEEEEeCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHG-AIWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHG-dIy~aL~~sGlLd~l~~~Gikyi~v~~vD 446 (834)
+++.+ .++.+..|+ .|.|-| .++.++ +.|.+.+.+++.+...|
T Consensus 64 ~~~~~--------~~~~~v~~~----------------------~~~Gt~~al~~a~------~~l~~~~~d~vlv~~gD 107 (456)
T PRK14356 64 AAFPD--------EDARFVLQE----------------------QQLGTGHALQCAW------PSLTAAGLDRVLVVNGD 107 (456)
T ss_pred Hhccc--------cCceEEEcC----------------------CCCCcHHHHHHHH------HHHhhcCCCcEEEEeCC
Confidence 54432 122222111 123333 344433 44544567899999999
Q ss_pred CCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcc
Q 003283 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (834)
Q Consensus 447 N~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (834)
.++...+ .+-.++.. ..+.+..+.+ .+-..+ ..-|++.. .+|+ ....+|-..+++.. ... .
T Consensus 108 ~P~i~~~-~i~~li~~--~~~~~~~l~~-~~~~~~-~~~g~v~~---~~g~---V~~~~ek~~~~~~~----~~~--~-- 168 (456)
T PRK14356 108 TPLVTTD-TIDDFLKE--AAGADLAFMT-LTLPDP-GAYGRVVR---RNGH---VAAIVEAKDYDEAL----HGP--E-- 168 (456)
T ss_pred cccCCHH-HHHHHHHH--HhcCCEEEEE-EEcCCC-CCceEEEE---cCCe---EEEEEECCCCChHH----hhh--h--
Confidence 9876542 12122332 2244444333 332322 24566643 4665 12333422222110 000 0
Q ss_pred ccCccceeeeEEeHHHHHhhhc
Q 003283 527 ADFPANTNILYVDLASAELVGS 548 (834)
Q Consensus 527 s~f~~Ninnl~fsL~~L~~vl~ 548 (834)
..-.|+..++|+-+++++++.
T Consensus 169 -~~~~~~GiY~f~~~~l~~ll~ 189 (456)
T PRK14356 169 -TGEVNAGIYYLRLDAVESLLP 189 (456)
T ss_pred -cCeEEEEEEEEEHHHHHHHHH
Confidence 012489999999998877664
No 24
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=97.36 E-value=0.0029 Score=70.47 Aligned_cols=193 Identities=16% Similarity=0.101 Sum_probs=109.7
Q ss_pred cEEEEEecCCccccCCC---CCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCch
Q 003283 288 ELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 363 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th 363 (834)
++..|+||||.||||.- +.||. |+|| .|| ++++++++.+.+. | .--++|.+.. .-.
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKp--LlpV-----~gk~PlIe~~l~~L~~~--------G---i~~I~iv~~~--~~~ 61 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLA--SLPF-----GGRYRLIDFPLSNMVNA--------G---IRNVFIFFKN--KER 61 (369)
T ss_pred cEEEEEECCCCCccccccccCCccc--cccc-----CCeeeEEEEEhhhhhcc--------C---CCEEEEEeCC--CcH
Confidence 46779999999999984 88999 9998 789 8999999988663 4 2357777876 233
Q ss_pred HHHHHHHHHhCCCCCCCCce---EEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEE
Q 003283 364 ERITSLCERLRWFGRGQSSF---QLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGA 440 (834)
Q Consensus 364 ~~T~~fle~n~yFGl~~~qV---~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi 440 (834)
+..+++|.+...||++..+. .++.|+ ..|-|-|+.+...... +.+...+-+.+
T Consensus 62 ~~I~~~l~~~~~~~~~~~~~~~~~~~~~e---------------------~~~l~tg~~~a~~~a~---~~l~~~~~~~~ 117 (369)
T TIGR02092 62 QSLFDHLGSGREWDLHRKRDGLFVFPYND---------------------RDDLSEGGKRYFSQNL---EFLKRSTSEYT 117 (369)
T ss_pred HHHHHHHhCCCCCCcccccCcEEEEeccC---------------------CCCcccChHHHHHHHH---HHHHhCCCCEE
Confidence 48999998766677643211 111111 1223334444332221 22222233689
Q ss_pred EEEeCCCCcccccHhHHHHhhhhhhcCCceeEEEeeecC--CCCcCceEEEEeecCCCccccceEEEEecccCccCCCCC
Q 003283 441 TVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS--GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRG 518 (834)
Q Consensus 441 ~v~~vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~--~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~ 518 (834)
.|.+.|+ +...| +..++-.+.+.++++.+.+ .+.. .+..-.|++.. ..+|+ + .++.+-++.
T Consensus 118 lvlnGD~-l~~~d--l~~ll~~h~~~~a~~tl~~-~~v~~~~~~~~g~vv~~--~~~g~----v--~~~~~~~~~----- 180 (369)
T TIGR02092 118 VVLNSHM-VCNID--LKAVLKYHEETGKDITVVY-KKVKPADASEYDTILRF--DESGK----V--KSIGQNLNP----- 180 (369)
T ss_pred EEECCCE-EEecC--HHHHHHHHHHcCCCEEEEE-EecCHHHccccCcEEEE--cCCCC----E--EeccccCCC-----
Confidence 9999998 44444 3344566656666655443 3322 12323455543 13444 3 222111111
Q ss_pred CCCCCCccccCccceeeeEEeHHHHHhhhc
Q 003283 519 PFSSNGLQADFPANTNILYVDLASAELVGS 548 (834)
Q Consensus 519 ~~~dg~l~s~f~~Ninnl~fsL~~L~~vl~ 548 (834)
+.. ...|+..++|+-+.+.+.++
T Consensus 181 ---~~~----~~~~~Giyi~~~~~l~~~l~ 203 (369)
T TIGR02092 181 ---EEE----ENISLDIYIVSTDLLIELLY 203 (369)
T ss_pred ---CCc----ceeeeeEEEEEHHHHHHHHH
Confidence 001 11388899999887766654
No 25
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=97.36 E-value=0.018 Score=60.15 Aligned_cols=188 Identities=13% Similarity=0.102 Sum_probs=103.0
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
+++.|+||||.++||+ +|. ++|+ .|+++++..++++... | .-.++| .+. ++.+.
T Consensus 2 ~~~~iIlA~g~S~R~~---~K~--Ll~i-----~Gkpll~~~l~~l~~~--------~---i~~ivv-v~~----~~~i~ 55 (245)
T PRK05450 2 KFLIIIPARYASTRLP---GKP--LADI-----GGKPMIVRVYERASKA--------G---ADRVVV-ATD----DERIA 55 (245)
T ss_pred ceEEEEecCCCCCCCC---CCc--cccc-----CCcCHHHHHHHHHHhc--------C---CCeEEE-ECC----cHHHH
Confidence 5788999999999996 698 9888 7999999999988653 2 112334 332 35677
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (834)
+++.+ +|. .+.+ . . ...+.|-+.+..++..-+ ..+-.++.+.+.|+
T Consensus 56 ~~~~~---~~~---~v~~---------~-~------------~~~~~gt~~~~~~~~~~~------~~~~~~vlv~~~D~ 101 (245)
T PRK05450 56 DAVEA---FGG---EVVM---------T-S------------PDHPSGTDRIAEAAAKLG------LADDDIVVNVQGDE 101 (245)
T ss_pred HHHHH---cCC---EEEE---------C-C------------CcCCCchHHHHHHHHhcC------CCCCCEEEEecCCC
Confidence 77754 232 1211 0 0 012445555554433211 12346889999999
Q ss_pred CcccccHhHHHHhhhhhhcCCceeEEEeeecC-----CCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCC
Q 003283 448 VVAATDLTLLALAGIGLHHGKKLGFASCKRSS-----GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSS 522 (834)
Q Consensus 448 ~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~-----~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~d 522 (834)
++...+- +-.++-.....+.++.+.+ .+.. ...+.++++.. .+|+ +++..+-+... +.+..+
T Consensus 102 Pli~~~~-l~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~d---~~g~------v~~~~e~~~~~--~~~~~~ 168 (245)
T PRK05450 102 PLIPPEI-IDQVAEPLANPEADMATLA-VPIHDAEEAFNPNVVKVVLD---ADGR------ALYFSRAPIPY--GRDAFA 168 (245)
T ss_pred CCCCHHH-HHHHHHHHhcCCCCeEeee-eecCCHHHhcCcCCCEEEeC---CCCc------EEEecCCCCCC--CCCccc
Confidence 9876521 1123433333345555554 3321 12223565532 4555 45566555321 011111
Q ss_pred CCccccCccceeeeEEeHHHHHhhhc
Q 003283 523 NGLQADFPANTNILYVDLASAELVGS 548 (834)
Q Consensus 523 g~l~s~f~~Ninnl~fsL~~L~~vl~ 548 (834)
.+.....-.|+....|+-..++.+.+
T Consensus 169 ~~~~~~~~~~~Giy~~~~~~l~~~~~ 194 (245)
T PRK05450 169 DSAPTPVYRHIGIYAYRRGFLRRFVS 194 (245)
T ss_pred cccCccccEEEEEEecCHHHHHHHHh
Confidence 10000123499999999888877654
No 26
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.35 E-value=0.009 Score=67.62 Aligned_cols=178 Identities=13% Similarity=0.112 Sum_probs=105.9
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHH
Q 003283 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (834)
Q Consensus 289 vavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~~ 368 (834)
+.+|+||||.||||+...||- ++|+ .|+++++..+++++.. . -.++|+++. ..+...+
T Consensus 3 ~~aiIlAaG~GtRl~~~~pK~--Llpi-----~gkPli~~~i~~l~~~--------~----~~i~Ivv~~---~~~~i~~ 60 (430)
T PRK14359 3 LSIIILAAGKGTRMKSSLPKV--LHTI-----CGKPMLFYILKEAFAI--------S----DDVHVVLHH---QKERIKE 60 (430)
T ss_pred ccEEEEcCCCCccCCCCCCce--eCEE-----CCccHHHHHHHHHHHc--------C----CcEEEEECC---CHHHHHH
Confidence 457899999999999999999 9998 7999999999988652 1 236777876 5777888
Q ss_pred HHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCC
Q 003283 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (834)
Q Consensus 369 fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~ 448 (834)
++.+. ++ ++.+..|+ .+.+.|.|+....+ ...-+++.+.+.|++
T Consensus 61 ~~~~~--~~----~v~~~~~~--------------------~~~~~gt~~al~~~----------~~~~d~vlv~~gD~p 104 (430)
T PRK14359 61 AVLEY--FP----GVIFHTQD--------------------LENYPGTGGALMGI----------EPKHERVLILNGDMP 104 (430)
T ss_pred HHHhc--CC----ceEEEEec--------------------CccCCCcHHHHhhc----------ccCCCeEEEEECCcc
Confidence 88753 21 34443332 11234555543321 112478999999998
Q ss_pred cccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcccc
Q 003283 449 VAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQAD 528 (834)
Q Consensus 449 La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s~ 528 (834)
+... .. +-.....+.++.+.+ .+...+. .-|++.. .+|+ ...++|......+ + .. .
T Consensus 105 ~~~~--~~---l~~l~~~~~~~~v~~-~~~~~~~-~~g~v~~---d~g~---v~~i~e~~~~~~~--------~--~~-~ 160 (430)
T PRK14359 105 LVEK--DE---LEKLLENDADIVMSV-FHLADPK-GYGRVVI---ENGQ---VKKIVEQKDANEE--------E--LK-I 160 (430)
T ss_pred CCCH--HH---HHHHHhCCCCEEEEE-EEcCCCc-cCcEEEE---cCCe---EEEEEECCCCCcc--------c--cc-c
Confidence 7432 22 223334445544443 3333332 3456543 4565 1234443322111 0 00 1
Q ss_pred CccceeeeEEeHHHHHhhhc
Q 003283 529 FPANTNILYVDLASAELVGS 548 (834)
Q Consensus 529 f~~Ninnl~fsL~~L~~vl~ 548 (834)
+-.|+..++|+-+++++.+.
T Consensus 161 ~~~~~Giyif~~~~l~~~~~ 180 (430)
T PRK14359 161 KSVNAGVYLFDRKLLEEYLP 180 (430)
T ss_pred eEEEeEEEEEEHHHHHHHHH
Confidence 33489999999999987664
No 27
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.30 E-value=0.011 Score=67.78 Aligned_cols=210 Identities=15% Similarity=0.121 Sum_probs=115.3
Q ss_pred cEEEEEecCCccccCC---CCCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCch
Q 003283 288 ELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 363 (834)
Q Consensus 288 kvavVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th 363 (834)
++..|+||||.||||. ...||- ++|+ .|+ +++++.++++... | .-.++|.|+. ..
T Consensus 3 ~~~AVILAaG~GtRL~PLT~~~PK~--Llpi-----~gk~plI~~~L~~l~~~--------G---i~~vivv~~~---~~ 61 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPLTKLRAKP--AVPL-----AGKYRLIDIPISNCINS--------G---INKIYVLTQF---NS 61 (429)
T ss_pred cEEEEEECCCCCCcchhhhcCCcce--eeEE-----CCeeEEeHHHHHHHHHC--------C---CCEEEEEecC---CH
Confidence 6788999999999998 489999 9998 688 9999999877652 4 2357888886 78
Q ss_pred HHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEE
Q 003283 364 ERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVR 443 (834)
Q Consensus 364 ~~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~ 443 (834)
+...++|.+..+|+.....+ +..+... ....-...+-|.|+-..... +.+....-+++.|.
T Consensus 62 ~~i~~~l~~~~~~~~~~~g~-------~~i~~~~-------~~~~~~~~~lGTa~al~~a~-----~~l~~~~~~~~lVl 122 (429)
T PRK02862 62 ASLNRHISQTYNFDGFSGGF-------VEVLAAQ-------QTPENPSWFQGTADAVRKYL-----WHFQEWDVDEYLIL 122 (429)
T ss_pred HHHHHHHhcCcCccccCCCE-------EEEeCCc-------ccCCCCccccCcHHHHHHHH-----HHHHhcCCCEEEEe
Confidence 88999998643332111010 1111000 00000011247666443332 23333334688999
Q ss_pred eCCCCcccccHhHHHHhhhhhhcCCceeEEEeeecCCC-CcCceEEEEeecCCCccccceEEEEecccCccCCCC---CC
Q 003283 444 QVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGA-TEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITR---GP 519 (834)
Q Consensus 444 ~vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~-~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~---~~ 519 (834)
+-|++. ..|.. .++-++...++++.+.+ .+...+ ...-|++.. ..+|+ ++++.|-|.....+ .+
T Consensus 123 ~gD~l~-~~dl~--~ll~~h~~~~a~~tl~~-~~~~~~~~~~yG~i~~--d~~g~------V~~~~Ekp~~~~~~~~~~~ 190 (429)
T PRK02862 123 SGDQLY-RMDYR--LFVQHHRETGADITLAV-LPVDEKDASGFGLMKT--DDDGR------ITEFSEKPKGDELKAMAVD 190 (429)
T ss_pred cCCEEE-eCCHH--HHHHHHHHcCCCEEEEE-EecChhhcccceEEEE--CCCCc------EEEEEECCCccccchhccc
Confidence 999843 44432 34555555666665554 222211 224677754 13454 33444433321000 00
Q ss_pred C-----CCCCc-cccCccceeeeEEeHHHHHhhhcc
Q 003283 520 F-----SSNGL-QADFPANTNILYVDLASAELVGSS 549 (834)
Q Consensus 520 ~-----~dg~l-~s~f~~Ninnl~fsL~~L~~vl~~ 549 (834)
. +.... ...+-.|+..++|+-+.|.+.++.
T Consensus 191 ~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~ 226 (429)
T PRK02862 191 TSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNK 226 (429)
T ss_pred ccccccccccCCCCceEEEEEEEEEcHHHHHHHHHH
Confidence 0 00000 001234899999999999877653
No 28
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=97.29 E-value=0.015 Score=63.69 Aligned_cols=180 Identities=19% Similarity=0.206 Sum_probs=105.8
Q ss_pred cEEEEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchH
Q 003283 288 ELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~ 364 (834)
.+-.|+||||.||||.- ..||- ++|| .||+++++.++.+... | + --++|.+.. .-.+
T Consensus 3 ~~kaIILAgG~GtRL~PlT~~~pK~--Llpv-----~gkPmI~~~l~~l~~a--------G--i-~~I~ii~~~--~~~~ 62 (292)
T PRK15480 3 TRKGIILAGGSGTRLYPVTMAVSKQ--LLPI-----YDKPMIYYPLSTLMLA--------G--I-RDILIISTP--QDTP 62 (292)
T ss_pred ceEEEEECCCcccccCcccCCCCce--EeEE-----CCEEHHHHHHHHHHHC--------C--C-CEEEEEecC--CchH
Confidence 46679999999999985 88999 9998 7899999988888652 4 2 235555554 3455
Q ss_pred HHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEe
Q 003283 365 RITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQ 444 (834)
Q Consensus 365 ~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~ 444 (834)
...++|.+...||+ ++.+..|. .|.|-|+-+.... ++.. +-+ ..+..
T Consensus 63 ~~~~~l~~g~~~g~---~i~y~~q~----------------------~~~Gta~Al~~a~------~~i~-~~~-~~lv~ 109 (292)
T PRK15480 63 RFQQLLGDGSQWGL---NLQYKVQP----------------------SPDGLAQAFIIGE------EFIG-GDD-CALVL 109 (292)
T ss_pred HHHHHHcCccccCc---eeEEEECC----------------------CCCCHHHHHHHHH------HHhC-CCC-EEEEE
Confidence 67888876666776 33333332 2566666544322 2222 223 45566
Q ss_pred CCCCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCC
Q 003283 445 VSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNG 524 (834)
Q Consensus 445 vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~ 524 (834)
-||++...| +-.++-.+...+.++.+.+ .+... .+.-|++.. ..+|+ + +++.|=|.. ..+
T Consensus 110 gD~i~~~~~--l~~ll~~~~~~~~~~tv~~-~~v~~-p~~yGvv~~--d~~g~----v--~~i~EKP~~--------p~s 169 (292)
T PRK15480 110 GDNIFYGHD--LPKLMEAAVNKESGATVFA-YHVND-PERYGVVEF--DQNGT----A--ISLEEKPLQ--------PKS 169 (292)
T ss_pred CCeeeeccC--HHHHHHHHHhCCCCeEEEE-EEcCC-cccCcEEEE--CCCCc----E--EEEEECCCC--------CCC
Confidence 899876554 3234555545555555443 33332 245677754 13455 3 333332221 001
Q ss_pred ccccCccceeeeEEeHHHHH
Q 003283 525 LQADFPANTNILYVDLASAE 544 (834)
Q Consensus 525 l~s~f~~Ninnl~fsL~~L~ 544 (834)
..+|+..++|+-+.++
T Consensus 170 ----~~a~~GiY~~~~~v~~ 185 (292)
T PRK15480 170 ----NYAVTGLYFYDNDVVE 185 (292)
T ss_pred ----CEEEEEEEEEChHHHH
Confidence 1259999999976544
No 29
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.22 E-value=0.015 Score=66.38 Aligned_cols=184 Identities=16% Similarity=0.183 Sum_probs=103.6
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
++..|+||||.|||||...||. ++|+ .||+++++.++.+... | .-.++|.++. .++...
T Consensus 5 ~~~aiILAaG~gsR~~~~~pK~--ll~v-----~gkpli~~~l~~l~~~--------g---i~~ivvv~~~---~~~~i~ 63 (446)
T PRK14353 5 TCLAIILAAGEGTRMKSSLPKV--LHPV-----AGRPMLAHVLAAAASL--------G---PSRVAVVVGP---GAEAVA 63 (446)
T ss_pred cceEEEEcCCCCCccCCCCCcc--cCEE-----CCchHHHHHHHHHHhC--------C---CCcEEEEECC---CHHHHH
Confidence 5678999999999999888999 9998 7899999999888653 2 2356777776 566677
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~v~~vD 446 (834)
+++.+. +. .+.++.|+ .|.|.++ ++.++ +.+ ..+-++++|.+.|
T Consensus 64 ~~~~~~---~~---~~~~~~~~----------------------~~~G~~~sl~~a~------~~l-~~~~~~~lv~~~D 108 (446)
T PRK14353 64 AAAAKI---AP---DAEIFVQK----------------------ERLGTAHAVLAAR------EAL-AGGYGDVLVLYGD 108 (446)
T ss_pred HHhhcc---CC---CceEEEcC----------------------CCCCcHHHHHHHH------HHH-hccCCCEEEEeCC
Confidence 776541 11 12222220 1334433 33332 222 2234778888999
Q ss_pred CCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcc
Q 003283 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (834)
Q Consensus 447 N~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (834)
.++...+. +-.++- ....+.+..+.+ .+.. ...+.|.+.. .+|+ ++++.|=|+.. . .+..
T Consensus 109 ~P~i~~~~-l~~l~~-~~~~~~~~~i~~-~~~~-~~~~~g~~~~---~~g~------v~~~~ek~~~~-~----~~~~-- 168 (446)
T PRK14353 109 TPLITAET-LARLRE-RLADGADVVVLG-FRAA-DPTGYGRLIV---KGGR------LVAIVEEKDAS-D----EERA-- 168 (446)
T ss_pred cccCCHHH-HHHHHH-hHhcCCcEEEEE-EEeC-CCCcceEEEE---CCCe------EEEEEECCCCC-h----HHhh--
Confidence 97654421 212222 223344444443 3322 2235666643 4554 34444422221 0 0000
Q ss_pred ccCccceeeeEEeHHHHHhhhc
Q 003283 527 ADFPANTNILYVDLASAELVGS 548 (834)
Q Consensus 527 s~f~~Ninnl~fsL~~L~~vl~ 548 (834)
.+-.|+..++|+-+.+.+.++
T Consensus 169 -~~~~~~Giy~~~~~~l~~~l~ 189 (446)
T PRK14353 169 -ITLCNSGVMAADGADALALLD 189 (446)
T ss_pred -ceEEEEEEEEEEHHHHHHHHH
Confidence 022488999999887766654
No 30
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=97.20 E-value=0.0051 Score=66.36 Aligned_cols=197 Identities=13% Similarity=0.103 Sum_probs=109.2
Q ss_pred EEEecCCccccCC----CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHH
Q 003283 291 EIYPLGGSADRLG----LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (834)
Q Consensus 291 vVlLAGGlGTRLG----~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T 366 (834)
.|+||||.||||. ...||- ++|+. .++|++|..++++..+. + .-.++|.|+. ...+.+
T Consensus 3 ~vILAgG~GtRl~PlS~~~~PK~--ll~l~----g~~~li~~~l~~l~~~~-------~---~~~i~vvt~~--~~~~~v 64 (274)
T cd02509 3 PVILAGGSGTRLWPLSRESYPKQ--FLKLF----GDKSLLQQTLDRLKGLV-------P---PDRILVVTNE--EYRFLV 64 (274)
T ss_pred EEEEcccccccCCcCCCCCCCce--EeEcC----CCCcHHHHHHHHHhcCC-------C---CCcEEEEech--HHHHHH
Confidence 6889999999996 578999 99983 34999999999876541 1 2378889987 455667
Q ss_pred HHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHH-cCceEEEEEe
Q 003283 367 TSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHD-NGRKGATVRQ 444 (834)
Q Consensus 367 ~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~-~Gikyi~v~~ 444 (834)
.+++++ ++ . .+.+..|+ .|.|-|+ +..++. .+.+ .+-+++.|..
T Consensus 65 ~~~l~~---~~-~--~~~ii~ep----------------------~~~gTa~ai~~a~~------~~~~~~~~~~vlVl~ 110 (274)
T cd02509 65 REQLPE---GL-P--EENIILEP----------------------EGRNTAPAIALAAL------YLAKRDPDAVLLVLP 110 (274)
T ss_pred HHHHhh---cC-C--CceEEECC----------------------CCCCcHHHHHHHHH------HHHhcCCCCeEEEec
Confidence 777765 11 1 12222221 1122232 332221 2222 2347899999
Q ss_pred CCCCcccccHhHHHHhhhh---hhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCC
Q 003283 445 VSNVVAATDLTLLALAGIG---LHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFS 521 (834)
Q Consensus 445 vDN~La~vDP~~l~flG~~---~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~ 521 (834)
.|.+....+ .|...+--+ +..+..+.+.+ .. ..+..+-|.+......+|. ...|..+.|=|+...++.-..
T Consensus 111 ~D~~i~~~~-~f~~~l~~~~~~~~~~~~vt~gi-~p-~~~~t~yGyI~~~~~~~~~---~~~V~~f~EKP~~~~a~~~~~ 184 (274)
T cd02509 111 SDHLIEDVE-AFLKAVKKAVEAAEEGYLVTFGI-KP-TRPETGYGYIEAGEKLGGG---VYRVKRFVEKPDLETAKEYLE 184 (274)
T ss_pred chhcccCHH-HHHHHHHHHHHHHHcCCEEEEEe-ee-cCCCCCeEEEEeCCcCCCC---ceEEeEEEECcChHHHHHHhh
Confidence 998875321 121112111 12334444443 22 3455677888541001121 024555555554421111111
Q ss_pred CCCccccCccceeeeEEeHHHHHhhhcc
Q 003283 522 SNGLQADFPANTNILYVDLASAELVGSS 549 (834)
Q Consensus 522 dg~l~s~f~~Ninnl~fsL~~L~~vl~~ 549 (834)
+| .|-.|...++|+.+.+.+.+++
T Consensus 185 ~g----~~~wNsGiyi~~~~~l~~~l~~ 208 (274)
T cd02509 185 SG----NYLWNSGIFLFRAKTFLEELKK 208 (274)
T ss_pred cC----CeEEECceeeeeHHHHHHHHHH
Confidence 12 1445999999999999999875
No 31
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.18 E-value=0.014 Score=68.00 Aligned_cols=148 Identities=16% Similarity=0.210 Sum_probs=87.5
Q ss_pred CcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHH
Q 003283 287 PELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (834)
Q Consensus 287 ~kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T 366 (834)
.++..|+||||.|||||...||. ++|+ .|+++++..++++.+. | .-.++|.|.. ..+..
T Consensus 6 ~~~~avILAaG~gtRl~~~~pK~--llpi-----~gkpli~~~l~~l~~~--------g---i~~ivvv~~~---~~~~i 64 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKSALPKV--LHPV-----AGRPMVAWAVKAARDL--------G---ARKIVVVTGH---GAEQV 64 (481)
T ss_pred CCceEEEECCCCCCcCCCCCCce--ecEE-----CCeeHHHHHHHHHHhC--------C---CCeEEEEeCC---CHHHH
Confidence 36788999999999999888999 9998 7899999998887552 3 2346677765 55667
Q ss_pred HHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeC
Q 003283 367 TSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQV 445 (834)
Q Consensus 367 ~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~v~~v 445 (834)
.++|+. + .+.+..|. .|.|-|+ ++.++. .+. ..-..+.|.+.
T Consensus 65 ~~~~~~---~-----~i~~v~~~----------------------~~~Gt~~al~~~~~------~l~-~~~~~~lV~~g 107 (481)
T PRK14358 65 EAALQG---S-----GVAFARQE----------------------QQLGTGDAFLSGAS------ALT-EGDADILVLYG 107 (481)
T ss_pred HHHhcc---C-----CcEEecCC----------------------CcCCcHHHHHHHHH------Hhh-CCCCcEEEEeC
Confidence 766642 1 13222221 1344444 333332 222 22233678899
Q ss_pred CCCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCc
Q 003283 446 SNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGK 497 (834)
Q Consensus 446 DN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk 497 (834)
|+++...+ .+-.++..+...+..+.+.+ .+.+. ..+-|++.. ..+|+
T Consensus 108 D~P~i~~~-~l~~ll~~~~~~~~~~ti~~-~~~~~-~~~yG~v~~--d~~g~ 154 (481)
T PRK14358 108 DTPLLRPD-TLRALVADHRAQGSAMTILT-GELPD-ATGYGRIVR--GADGA 154 (481)
T ss_pred CeeccCHH-HHHHHHHHHHhcCCeEEEEE-EEcCC-CCCceEEEE--CCCCC
Confidence 99876542 22234555555555554443 33332 234678754 23555
No 32
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=97.14 E-value=0.018 Score=58.76 Aligned_cols=173 Identities=17% Similarity=0.156 Sum_probs=97.5
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 291 vVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
+|+||||.|+||+ ...||. ++|+ .|+++++..++++... | +. .++|.++. ..+...
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~--ll~~-----~g~pli~~~l~~l~~~--------~--~~-~iivv~~~---~~~~i~ 59 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKP--MLKV-----GGKPILETIIDRFIAQ--------G--FR-NFYISVNY---LAEMIE 59 (220)
T ss_pred CEEecCCCccccCcccCCCCCc--cCeE-----CCcchHHHHHHHHHHC--------C--Cc-EEEEECcc---CHHHHH
Confidence 4889999999997 468999 9998 7899999999988753 3 11 45677776 566777
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (834)
+++.+...+|+ ++.+..| -.|.|-|+...++.. ..-+++.|...|+
T Consensus 60 ~~~~~~~~~~~---~i~~~~~----------------------~~~~g~~~~l~~~~~---------~~~~~~lv~~~D~ 105 (220)
T cd06426 60 DYFGDGSKFGV---NISYVRE----------------------DKPLGTAGALSLLPE---------KPTDPFLVMNGDI 105 (220)
T ss_pred HHHCCccccCc---cEEEEEC----------------------CCCCcchHHHHHHHh---------hCCCCEEEEcCCE
Confidence 77775432332 2222111 123354555443332 2246778888886
Q ss_pred CcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCccc
Q 003283 448 VVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQA 527 (834)
Q Consensus 448 ~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s 527 (834)
+. .. .+-.++-.+...+.+..+.+ ++......-|++-. .+|+ ++++.|=+ . . .
T Consensus 106 i~-~~--~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~---d~~~------v~~~~ek~-~--------~-~--- 158 (220)
T cd06426 106 LT-NL--NYEHLLDFHKENNADATVCV--REYEVQVPYGVVET---EGGR------ITSIEEKP-T--------H-S--- 158 (220)
T ss_pred ee-cc--CHHHHHHHHHhcCCCEEEEE--EEcCCCCcceEEEE---CCCE------EEEEEECC-C--------C-C---
Confidence 32 22 33344554444455544433 22222334565532 2343 34443211 0 0 0
Q ss_pred cCccceeeeEEeHHHHHhh
Q 003283 528 DFPANTNILYVDLASAELV 546 (834)
Q Consensus 528 ~f~~Ninnl~fsL~~L~~v 546 (834)
.-.|++..+|+-+.++.+
T Consensus 159 -~~~~~Giy~~~~~~~~~i 176 (220)
T cd06426 159 -FLVNAGIYVLEPEVLDLI 176 (220)
T ss_pred -CeEEEEEEEEcHHHHhhc
Confidence 114889999998876543
No 33
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.12 E-value=0.018 Score=66.14 Aligned_cols=185 Identities=14% Similarity=0.112 Sum_probs=105.7
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
++..|+||||.||||+...||. ++|+ .|++++++.++++.+. | .-.++|.++. ..+...
T Consensus 3 ~~~avIlAaG~g~Rl~~~~pK~--l~pi-----~g~pli~~~l~~l~~~--------g---i~~iiiv~~~---~~~~i~ 61 (459)
T PRK14355 3 NLAAIILAAGKGTRMKSDLVKV--MHPL-----AGRPMVSWPVAAAREA--------G---AGRIVLVVGH---QAEKVR 61 (459)
T ss_pred cceEEEEcCCCCcccCCCCCce--ecee-----CCccHHHHHHHHHHhc--------C---CCeEEEEECC---CHHHHH
Confidence 5677899999999999889999 9998 6899999988877653 3 3367888887 566677
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~v~~vD 446 (834)
++|.+.. .+.+..|. .|-|.|+ ++.++ +.+ +..-+++.|.+.|
T Consensus 62 ~~~~~~~-------~i~~~~~~----------------------~~~Gt~~al~~a~------~~l-~~~~~~vlv~~gD 105 (459)
T PRK14355 62 EHFAGDG-------DVSFALQE----------------------EQLGTGHAVACAA------PAL-DGFSGTVLILCGD 105 (459)
T ss_pred HHhccCC-------ceEEEecC----------------------CCCCHHHHHHHHH------HHh-hccCCcEEEEECC
Confidence 7765311 23222221 1335554 33332 222 2224789999999
Q ss_pred CCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcc
Q 003283 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (834)
Q Consensus 447 N~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (834)
+++...+ .+-.++-.+...+.++.+.. .+...+ ..-|++.. ..+|+ +++..|=++.. . ....
T Consensus 106 ~p~~~~~-~i~~l~~~~~~~~~~~~v~~-~~~~~~-~~~g~v~~--d~~g~------v~~~~ek~~~~-~----~~~~-- 167 (459)
T PRK14355 106 VPLLRAE-TLQGMLAAHRATGAAVTVLT-ARLENP-FGYGRIVR--DADGR------VLRIVEEKDAT-P----EERS-- 167 (459)
T ss_pred ccCcCHH-HHHHHHHHHHhcCCcEEEEE-EEcCCC-CcCCEEEE--cCCCC------EEEEEEcCCCC-h----hHhh--
Confidence 9865431 12123444434444433332 333333 23455533 13444 34444322221 0 0000
Q ss_pred ccCccceeeeEEeHHHHHhhhc
Q 003283 527 ADFPANTNILYVDLASAELVGS 548 (834)
Q Consensus 527 s~f~~Ninnl~fsL~~L~~vl~ 548 (834)
.+..|++.++|+-+++.+.+.
T Consensus 168 -~~~~~~Giy~~~~~~l~~~l~ 188 (459)
T PRK14355 168 -IREVNSGIYCVEAAFLFDAIG 188 (459)
T ss_pred -ccEEEEEEEEEeHHHHHHHHH
Confidence 123599999999988766664
No 34
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=97.11 E-value=0.022 Score=65.49 Aligned_cols=216 Identities=14% Similarity=0.126 Sum_probs=121.6
Q ss_pred CcEEEEEecCCccccCC---CCCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCc
Q 003283 287 PELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN 362 (834)
Q Consensus 287 ~kvavVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~T 362 (834)
.++..|+||||.||||. ...||. ++|+ .|+ .+++++++.+... | .=-++|.|.. .
T Consensus 2 ~~~~aIIlA~G~gtRl~PlT~~~PK~--llpv-----~g~~plId~~L~~l~~~--------G---i~~i~iv~~~---~ 60 (436)
T PLN02241 2 KSVAAIILGGGAGTRLFPLTKRRAKP--AVPI-----GGNYRLIDIPMSNCINS--------G---INKIYVLTQF---N 60 (436)
T ss_pred CceEEEEEeCCCCCcchhhhcCCccc--ceEe-----CCcceEehHHHHHHHhC--------C---CCEEEEEecc---C
Confidence 36788999999999998 689999 9998 565 8999998888652 4 2235777876 7
Q ss_pred hHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEE
Q 003283 363 HERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATV 442 (834)
Q Consensus 363 h~~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v 442 (834)
.+...++|++..+|+.... +.++.+..+.. ... ..-...|.|.||-...... .+++...++-+++.|
T Consensus 61 ~~~i~~~l~~~~~~~~~~~----~~~~~~~i~~~------~q~-~~~~~~~lGt~~al~~~~~--~~~~~~~~~~~~~lv 127 (436)
T PLN02241 61 SASLNRHLSRAYNFGNGGN----FGDGFVEVLAA------TQT-PGEKGWFQGTADAVRQFLW--LFEDAKNKNVEEVLI 127 (436)
T ss_pred HHHHHHHHhccCCCCCCcc----cCCCCEEEcCC------ccc-CCCCccccCcHHHHHHHHH--HHHhcccCCCCEEEE
Confidence 7889999985433543111 11111111110 000 0011257888775543322 233222223578999
Q ss_pred EeCCCCcccccHhHHHHhhhhhhcCCceeEEEeeecCC-CCcCceEEEEeecCCCccccceEEEEecccCccCCC-CCCC
Q 003283 443 RQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSG-ATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGIT-RGPF 520 (834)
Q Consensus 443 ~~vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~-~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~-~~~~ 520 (834)
.+-|++ ...| +..++-++.+.++++.+.+ .+... ....-|++.. ..+| .++++.|-|..... .-..
T Consensus 128 ~~gD~v-~~~d--l~~ll~~h~~~~a~~ti~~-~~v~~~~~~~ygvv~~--d~~~------~v~~~~Ekp~~~~~~~~~~ 195 (436)
T PLN02241 128 LSGDHL-YRMD--YMDFVQKHRESGADITIAC-LPVDESRASDFGLMKI--DDTG------RIIEFSEKPKGDELKAMQV 195 (436)
T ss_pred ecCCeE-EccC--HHHHHHHHHHcCCCEEEEE-EecchhhcCcceEEEE--CCCC------CEEEEEECCCCcccccccc
Confidence 999985 4454 3344666666666655443 33221 1245677754 1233 46667665543100 0000
Q ss_pred C-------CCCccc-cCccceeeeEEeHHHHHhhhc
Q 003283 521 S-------SNGLQA-DFPANTNILYVDLASAELVGS 548 (834)
Q Consensus 521 ~-------dg~l~s-~f~~Ninnl~fsL~~L~~vl~ 548 (834)
+ +..... ..-.|+..++|+-+.+..+++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~ 231 (436)
T PLN02241 196 DTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLR 231 (436)
T ss_pred cccccccccccccccceEEEeEEEEEEHHHHHHHHH
Confidence 0 000000 122499999999998887765
No 35
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=97.10 E-value=0.0022 Score=66.53 Aligned_cols=185 Identities=16% Similarity=0.160 Sum_probs=110.5
Q ss_pred EEecCCccccCC---CCCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 292 IYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 292 VlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
|+||||.||||. ...||- ++|+ .|+ +++++.++++... | ..-.++|.+.. ..+...
T Consensus 3 vIla~G~GtRl~plt~~~pK~--ll~i-----~g~~pli~~~l~~l~~~--------g--~~~ii~V~~~~---~~~~i~ 62 (248)
T PF00483_consen 3 VILAGGKGTRLRPLTDTIPKP--LLPI-----GGKYPLIDYVLENLANA--------G--IKEIIVVVNGY---KEEQIE 62 (248)
T ss_dssp EEEEESCCGGGTTTTTTSSGG--GSEE-----TTEEEHHHHHHHHHHHT--------T--CSEEEEEEETT---THHHHH
T ss_pred EEECCCCCccCchhhhccccc--ccee-----cCCCcchhhhhhhhccc--------C--CceEEEEEeec---cccccc
Confidence 567999999997 678998 9998 577 9999999988763 3 33346666655 677888
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcC-ceEEEEEeCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNG-RKGATVRQVS 446 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~G-ikyi~v~~vD 446 (834)
+++++...+++ +|.+..|+. |.|.|+-...+ .+.+.... -+++.|.+.|
T Consensus 63 ~~~~~~~~~~~---~i~~i~~~~----------------------~~Gta~al~~a-----~~~i~~~~~~~~~lv~~gD 112 (248)
T PF00483_consen 63 EHLGSGYKFGV---KIEYIVQPE----------------------PLGTAGALLQA-----LDFIEEEDDDEDFLVLNGD 112 (248)
T ss_dssp HHHTTSGGGTE---EEEEEEESS----------------------SSCHHHHHHHT-----HHHHTTSEE-SEEEEETTE
T ss_pred ccccccccccc---cceeeeccc----------------------ccchhHHHHHH-----HHHhhhccccceEEEEecc
Confidence 99988665552 233322221 11444433322 12222222 3579999999
Q ss_pred CCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcc
Q 003283 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (834)
Q Consensus 447 N~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (834)
++.-. | +..++-.+...+.++.+.+.........+-|++.. ..+|+ |++.-|=|....+ +
T Consensus 113 ~i~~~-~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~--d~~~~------V~~~~EKP~~~~~-------~-- 172 (248)
T PF00483_consen 113 IIFDD-D--LQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEV--DEDGR------VIRIVEKPDNPNA-------S-- 172 (248)
T ss_dssp EEEST-T--HHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEE--ETTSE------EEEEEESCSSHSH-------S--
T ss_pred ccccc-h--hhhHHHhhhccccccccccccccccccccceeeee--cccee------EEEEeccCccccc-------c--
Confidence 85544 2 33556777777776544432322333445666654 24454 4444443333100 0
Q ss_pred ccCccceeeeEEeHHHHHhhhc
Q 003283 527 ADFPANTNILYVDLASAELVGS 548 (834)
Q Consensus 527 s~f~~Ninnl~fsL~~L~~vl~ 548 (834)
-..|+..++|+-+.+..+++
T Consensus 173 --~~~~~G~Y~~~~~~~~~~~~ 192 (248)
T PF00483_consen 173 --NLINTGIYIFKPEIFDFLLE 192 (248)
T ss_dssp --SEEEEEEEEEETHHHHHHHH
T ss_pred --eeccCceEEEcchHHHHHhh
Confidence 22599999999998887753
No 36
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=97.06 E-value=0.0074 Score=61.41 Aligned_cols=136 Identities=13% Similarity=0.158 Sum_probs=83.6
Q ss_pred EEecCCccccCC---CCCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 292 IYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 292 VlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
|+||||.||||. ...||. ++|+ .|+ +++++.++.+... | .-.++|.|+. ..+...
T Consensus 2 vILAaG~gtRl~plt~~~pK~--llpv-----~g~~pli~~~l~~l~~~--------g---i~~iivv~~~---~~~~i~ 60 (200)
T cd02508 2 IILAGGEGTRLSPLTKKRAKP--AVPF-----GGRYRLIDFPLSNMVNS--------G---IRNVGVLTQY---KSRSLN 60 (200)
T ss_pred EEeCCCCCcccchhhcCCcce--eeEE-----CCeeeeHHHHHHHHHHC--------C---CCEEEEEeCC---ChHHHH
Confidence 789999999996 478999 9998 677 9999999888652 3 3467889987 678889
Q ss_pred HHHHHhCCCCCCCC--ceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeC
Q 003283 368 SLCERLRWFGRGQS--SFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQV 445 (834)
Q Consensus 368 ~fle~n~yFGl~~~--qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~v 445 (834)
++|.+...+|++.. .+.+. + .......-.|-|.|+-...... .+...+-+++.|...
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~~~~~Gta~al~~a~~-----~i~~~~~~~~lv~~g 119 (200)
T cd02508 61 DHLGSGKEWDLDRKNGGLFIL-P---------------PQQRKGGDWYRGTADAIYQNLD-----YIERSDPEYVLILSG 119 (200)
T ss_pred HHHhCCCcccCCCCCCCEEEe-C---------------cccCCCCCcccCcHHHHHHHHH-----HHHhCCCCEEEEecC
Confidence 99987666665311 12111 0 0000012356676664433322 233333477889999
Q ss_pred CCCcccccHhHHHHhhhhhhcCCceeE
Q 003283 446 SNVVAATDLTLLALAGIGLHHGKKLGF 472 (834)
Q Consensus 446 DN~La~vDP~~l~flG~~~~~~~~~~~ 472 (834)
|++ ...| +-.++-.+..++.++.+
T Consensus 120 D~v-~~~~--~~~~l~~~~~~~~~~t~ 143 (200)
T cd02508 120 DHI-YNMD--YREMLDFHIESGADITV 143 (200)
T ss_pred CEE-EecC--HHHHHHHHHHcCCCEEE
Confidence 984 3332 22334544444444433
No 37
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=97.05 E-value=0.026 Score=57.93 Aligned_cols=66 Identities=20% Similarity=0.338 Sum_probs=50.6
Q ss_pred EEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 291 vVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
.|+||||.||||+- ..||. ++|+ .|+++++..++.+.+. | .--++|.|.. ..+.+.
T Consensus 2 aiIlaaG~g~Rl~plt~~~pK~--llpi-----~g~~li~~~l~~l~~~--------g---i~~i~iv~~~---~~~~i~ 60 (221)
T cd06422 2 AMILAAGLGTRMRPLTDTRPKP--LVPV-----AGKPLIDHALDRLAAA--------G---IRRIVVNTHH---LADQIE 60 (221)
T ss_pred EEEEcCCCCCccccccCCCCCc--eeeE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEccC---CHHHHH
Confidence 47899999999975 78999 9998 6899999999988663 3 2235666665 788888
Q ss_pred HHHHHhCCCCC
Q 003283 368 SLCERLRWFGR 378 (834)
Q Consensus 368 ~fle~n~yFGl 378 (834)
+++.+ .++|+
T Consensus 61 ~~~~~-~~~~~ 70 (221)
T cd06422 61 AHLGD-SRFGL 70 (221)
T ss_pred HHHhc-ccCCc
Confidence 88876 44553
No 38
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=97.04 E-value=0.0094 Score=67.68 Aligned_cols=61 Identities=16% Similarity=0.241 Sum_probs=48.3
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHHH
Q 003283 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLC 370 (834)
Q Consensus 291 vVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~~fl 370 (834)
.|+||||.|||||...||- ++|+ .|+++++..++++... | ...++|.++. ..+.+.+++
T Consensus 3 aiIlAaG~g~R~~~~~pK~--l~~i-----~gkpli~~~l~~l~~~--------g---~~~iiiv~~~---~~~~i~~~~ 61 (451)
T TIGR01173 3 VVILAAGKGTRMKSDLPKV--LHPL-----AGKPMLEHVIDAARAL--------G---PQKIHVVYGH---GAEQVRKAL 61 (451)
T ss_pred EEEEcCCCCcccCCCCchh--hcee-----CCccHHHHHHHHHHhC--------C---CCeEEEEECC---CHHHHHHHh
Confidence 5788999999999888999 9998 7899999988887542 3 2356788887 466677777
Q ss_pred HH
Q 003283 371 ER 372 (834)
Q Consensus 371 e~ 372 (834)
.+
T Consensus 62 ~~ 63 (451)
T TIGR01173 62 AN 63 (451)
T ss_pred cC
Confidence 64
No 39
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.01 E-value=0.028 Score=64.36 Aligned_cols=202 Identities=9% Similarity=0.042 Sum_probs=117.2
Q ss_pred CcEEEEEecCCccccCCC---CCCCCCceeeccccCCCCCc-chHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCc
Q 003283 287 PELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRT-LLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN 362 (834)
Q Consensus 287 ~kvavVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkT-lLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~T 362 (834)
.++..|+||||.||||.- ..||. ++|+ .|++ ++++.++++... | .-.++|.|.. .
T Consensus 14 ~~~~aVILAaG~GtRl~pLT~~~PK~--llpv-----~gkp~lI~~~l~~l~~~--------G---i~~i~vv~~~---~ 72 (425)
T PRK00725 14 RDTLALILAGGRGSRLKELTDKRAKP--AVYF-----GGKFRIIDFALSNCINS--------G---IRRIGVLTQY---K 72 (425)
T ss_pred cceEEEEECCCCCCcchhhhCCCcce--eEEE-----CCEEEEhHHHHHHHHHC--------C---CCeEEEEecC---C
Confidence 478999999999999986 79999 9998 6886 999999888652 4 2356888886 7
Q ss_pred hHHHHHHHHHhCCCCCCCC----ceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCce
Q 003283 363 HERITSLCERLRWFGRGQS----SFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRK 438 (834)
Q Consensus 363 h~~T~~fle~n~yFGl~~~----qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gik 438 (834)
.+...++|.+. +++.+. .+.++.+. ........|-|-|+-..... +.+....-+
T Consensus 73 ~~~i~~~~~~~--~~~~~~~~~~~i~i~~~~---------------~~~~~e~~~lGTa~al~~a~-----~~l~~~~~d 130 (425)
T PRK00725 73 AHSLIRHIQRG--WSFFREELGEFVDLLPAQ---------------QRVDEENWYRGTADAVYQNL-----DIIRRYDPK 130 (425)
T ss_pred HHHHHHHHHhh--hcccccCCCCeEEEeCCc---------------ccCCCCccccCcHHHHHHHH-----HHHHhcCCC
Confidence 88889998752 232111 11111100 01111234567655333221 233333346
Q ss_pred EEEEEeCCCCcccccHhHHHHhhhhhhcCCceeEEEeeecC-CCCcCceEEEEeecCCCccccceEEEEecccCccCCCC
Q 003283 439 GATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITR 517 (834)
Q Consensus 439 yi~v~~vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~-~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~ 517 (834)
++.|.+.|++. ..| +-.++-++...++++.+.+ .+.+ .....-|++.. ..+|+ ++++.|=|... ..
T Consensus 131 ~~lVl~gD~l~-~~d--l~~ll~~h~~~~~~~tl~~-~~~~~~~~~~yG~v~~--d~~~~------V~~~~EKp~~~-~~ 197 (425)
T PRK00725 131 YVVILAGDHIY-KMD--YSRMLADHVESGADCTVAC-LEVPREEASAFGVMAV--DENDR------ITAFVEKPANP-PA 197 (425)
T ss_pred EEEEecCCeEe-ccC--HHHHHHHHHHcCCCEEEEE-EecchhhcccceEEEE--CCCCC------EEEEEECCCCc-cc
Confidence 89999999843 333 3344666666677766654 2221 12234678754 12444 34444423221 00
Q ss_pred CCCCCCCccccCccceeeeEEeHHHHHhhhc
Q 003283 518 GPFSSNGLQADFPANTNILYVDLASAELVGS 548 (834)
Q Consensus 518 ~~~~dg~l~s~f~~Ninnl~fsL~~L~~vl~ 548 (834)
...... .+-.|+..++|+-+.|.+.+.
T Consensus 198 --~~~~~~--~~l~n~GIYi~~~~~L~~~L~ 224 (425)
T PRK00725 198 --MPGDPD--KSLASMGIYVFNADYLYELLE 224 (425)
T ss_pred --cccCcc--ceEEEeeEEEEeHHHHHHHHH
Confidence 000100 133599999999999877664
No 40
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=97.00 E-value=0.024 Score=61.89 Aligned_cols=176 Identities=19% Similarity=0.226 Sum_probs=102.3
Q ss_pred EEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 291 vVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
.|+||||.||||.- ..||- ++|| .||+++++.++.+... | .-.++|.|.. ...+..+
T Consensus 2 aIILAgG~GtRL~plT~~~pK~--Llpv-----~gkPmI~~~L~~l~~a--------G---i~~I~iv~~~--~~~~~~~ 61 (286)
T TIGR01207 2 GIILAGGSGTRLYPITRAVSKQ--LLPI-----YDKPMIYYPLSTLMLA--------G---IRDILIISTP--QDTPRFQ 61 (286)
T ss_pred EEEECCCCCccCCcccCCCCce--eeEE-----CCEEhHHHHHHHHHHC--------C---CCEEEEEecC--CcHHHHH
Confidence 47899999999974 88999 9999 6899999998888652 3 2345666665 3566778
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (834)
++|.....||+ ++.+..|. .|-|-|+-+....+ +.. -.-..+...||
T Consensus 62 ~~lg~g~~~g~---~i~~~~q~----------------------~~~Gta~al~~a~~------~l~--~~~~~li~gD~ 108 (286)
T TIGR01207 62 QLLGDGSQWGV---NLSYAVQP----------------------SPDGLAQAFIIGED------FIG--GDPSALVLGDN 108 (286)
T ss_pred HHhccccccCc---eEEEEEcc----------------------CCCCHHHHHHHHHH------HhC--CCCEEEEECCE
Confidence 88876666775 34333331 35566554433221 222 13345557999
Q ss_pred CcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCccc
Q 003283 448 VVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQA 527 (834)
Q Consensus 448 ~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s 527 (834)
++...| +-.++-.+...+.++.+.+ .+...+ +.-|++.. ..+|+ ++++.|=|... . |
T Consensus 109 i~~~~~--l~~ll~~~~~~~~~~ti~~-~~v~~p-~~yGvv~~--d~~g~------V~~i~EKp~~~--------~---s 165 (286)
T TIGR01207 109 IFYGHD--LSDLLKRAAARESGATVFA-YQVSDP-ERYGVVEF--DSNGR------AISIEEKPAQP--------K---S 165 (286)
T ss_pred eccccC--HHHHHHHHHhcCCCcEEEE-EEccCH-HHCceEEE--CCCCe------EEEEEECCCCC--------C---C
Confidence 875544 2233444444555554443 333322 35677754 13454 33433322110 0 1
Q ss_pred cCccceeeeEEeHHHH
Q 003283 528 DFPANTNILYVDLASA 543 (834)
Q Consensus 528 ~f~~Ninnl~fsL~~L 543 (834)
. -+|+..++|+-+.+
T Consensus 166 ~-~~~~GiYi~~~~i~ 180 (286)
T TIGR01207 166 N-YAVTGLYFYDNRVV 180 (286)
T ss_pred C-EEEEEEEEEchHHH
Confidence 1 16999999997654
No 41
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=97.00 E-value=0.015 Score=60.75 Aligned_cols=176 Identities=16% Similarity=0.128 Sum_probs=100.0
Q ss_pred EEEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHH
Q 003283 290 GEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (834)
Q Consensus 290 avVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T 366 (834)
-.|+||||.||||+- ..||. ++|+ .|+++++..++.+.+. | .-.++|.++. ...+..
T Consensus 2 ~~iIlAaG~gtRl~plt~~~pK~--llpv-----~~~pli~~~l~~l~~~--------g---i~~i~vv~~~--~~~~~~ 61 (240)
T cd02538 2 KGIILAGGSGTRLYPLTKVVSKQ--LLPV-----YDKPMIYYPLSTLMLA--------G---IREILIISTP--EDLPLF 61 (240)
T ss_pred eEEEEcCcCcccCCccccCCCce--eeEE-----CCEEhHHHHHHHHHHC--------C---CCEEEEEeCc--chHHHH
Confidence 368999999999975 78999 9998 6899999998887542 3 2356677775 345677
Q ss_pred HHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeC
Q 003283 367 TSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQV 445 (834)
Q Consensus 367 ~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~v~~v 445 (834)
.++|.....+|+ +|.+-. ...|.|-|+ ++.++. .+ + + +..+|.+.
T Consensus 62 ~~~l~~~~~~~~---~i~~~~----------------------~~~~~G~~~al~~a~~---~~----~-~-~~~lv~~g 107 (240)
T cd02538 62 KELLGDGSDLGI---RITYAV----------------------QPKPGGLAQAFIIGEE---FI----G-D-DPVCLILG 107 (240)
T ss_pred HHHHhcccccCc---eEEEee----------------------CCCCCCHHHHHHHHHH---hc----C-C-CCEEEEEC
Confidence 888876544443 121100 112445544 332221 11 1 1 44566688
Q ss_pred CCCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCc
Q 003283 446 SNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGL 525 (834)
Q Consensus 446 DN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l 525 (834)
|+++...| +-.++-.+...+.++.+.+ .+... .+.-|++.. ..+|+ ++++.|=|... ..
T Consensus 108 D~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~g~v~~--d~~g~------v~~~~ekp~~~-------~~-- 166 (240)
T cd02538 108 DNIFYGQG--LSPILQRAAAQKEGATVFG-YEVND-PERYGVVEF--DENGR------VLSIEEKPKKP-------KS-- 166 (240)
T ss_pred CEEEccHH--HHHHHHHHHhcCCCcEEEE-EECCc-hhcCceEEe--cCCCc------EEEEEECCCCC-------CC--
Confidence 88754432 3234545555566665554 33222 234567653 13454 33443322211 00
Q ss_pred cccCccceeeeEEeHHHH
Q 003283 526 QADFPANTNILYVDLASA 543 (834)
Q Consensus 526 ~s~f~~Ninnl~fsL~~L 543 (834)
...|++.++|+-+.+
T Consensus 167 ---~~~~~Giyi~~~~~l 181 (240)
T cd02538 167 ---NYAVTGLYFYDNDVF 181 (240)
T ss_pred ---CeEEEEEEEECHHHH
Confidence 125899999998766
No 42
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=96.90 E-value=0.04 Score=61.08 Aligned_cols=175 Identities=17% Similarity=0.181 Sum_probs=101.0
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 291 vVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
.|+||||.||||+ ...||. ++|+ .|++++++.++.+... | .-.++|+|+. ...+...
T Consensus 2 aiIlAaG~gtRl~plt~~~pK~--l~pv-----~g~pli~~~l~~l~~~--------g---i~~i~vv~~~--~~~~~i~ 61 (353)
T TIGR01208 2 ALILAAGKGTRLRPLTFTRPKQ--LIPV-----ANKPILQYAIEDLAEA--------G---ITDIGIVVGP--VTGEEIK 61 (353)
T ss_pred EEEECCcCcCccCccccCCCcc--ccEE-----CCEeHHHHHHHHHHHC--------C---CCEEEEEeCC--CCHHHHH
Confidence 4789999999997 488999 9998 6899999998877542 3 2357888887 4778888
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (834)
++|.+...||+ ++.+..|. .|.|-++-..+... .+ . + +-+.+.+.|+
T Consensus 62 ~~~~~~~~~~~---~~~~~~~~----------------------~~~G~~~al~~a~~-----~l-~-~-~~~li~~gD~ 108 (353)
T TIGR01208 62 EIVGEGERFGA---KITYIVQG----------------------EPLGLAHAVYTARD-----FL-G-D-DDFVVYLGDN 108 (353)
T ss_pred HHHhcccccCc---eEEEEECC----------------------CCCCHHHHHHHHHH-----hc-C-C-CCEEEEECCe
Confidence 99887555554 23222221 24455543332221 12 1 1 2345666788
Q ss_pred CcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCccc
Q 003283 448 VVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQA 527 (834)
Q Consensus 448 ~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s 527 (834)
++ ..| +-.++-.+...+++..+.+ .+...+ ..-|++.. .++. .++++.|-|... . +
T Consensus 109 ~~-~~~--l~~l~~~~~~~~~d~ti~~-~~~~~~-~~~g~~~~---~~~~-----~v~~~~ekp~~~-------~-~--- 164 (353)
T TIGR01208 109 LI-QDG--ISRFVKSFEEKDYDALILL-TKVRDP-TAFGVAVL---EDGK-----RILKLVEKPKEP-------P-S--- 164 (353)
T ss_pred ec-Ccc--HHHHHHHHHhcCCCcEEEE-EECCCh-hhCeEEEE---cCCC-----cEEEEEECCCCC-------C-c---
Confidence 65 332 3344555556666665554 333332 23466543 3332 233333333221 0 0
Q ss_pred cCccceeeeEEeHHHH
Q 003283 528 DFPANTNILYVDLASA 543 (834)
Q Consensus 528 ~f~~Ninnl~fsL~~L 543 (834)
-..|+..++|+-.++
T Consensus 165 -~~~~~Giy~~~~~l~ 179 (353)
T TIGR01208 165 -NLAVVGLYMFRPLIF 179 (353)
T ss_pred -cceEEEEEEECHHHH
Confidence 114889999998444
No 43
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=96.88 E-value=0.043 Score=57.03 Aligned_cols=179 Identities=15% Similarity=0.207 Sum_probs=104.4
Q ss_pred EEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 291 vVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
.|+||||.||||+- ..||. ++|+ .|+++++..++.+... | .-.++|.|.. .++.+.
T Consensus 3 ~iIlAaG~g~R~~~lt~~~pK~--llpv-----~g~pli~~~l~~l~~~--------g---~~~v~iv~~~---~~~~~~ 61 (233)
T cd06425 3 ALILVGGYGTRLRPLTLTVPKP--LVEF-----CNKPMIEHQIEALAKA--------G---VKEIILAVNY---RPEDMV 61 (233)
T ss_pred EEEecCCCccccCccccCCCCc--cCeE-----CCcchHHHHHHHHHHC--------C---CcEEEEEeee---CHHHHH
Confidence 58899999999974 68999 9998 6889999999888663 3 2346788886 677888
Q ss_pred HHHHHhC-CCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCC
Q 003283 368 SLCERLR-WFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (834)
Q Consensus 368 ~fle~n~-yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vD 446 (834)
+++.+.. .+|+ ++.+ . ....|.|-|+-..... +.+ ...-+-+.|.+.|
T Consensus 62 ~~l~~~~~~~~~---~i~~------------------~----~~~~~~G~~~al~~a~-----~~~-~~~~~~~lv~~~D 110 (233)
T cd06425 62 PFLKEYEKKLGI---KITF------------------S----IETEPLGTAGPLALAR-----DLL-GDDDEPFFVLNSD 110 (233)
T ss_pred HHHhcccccCCe---EEEe------------------c----cCCCCCccHHHHHHHH-----HHh-ccCCCCEEEEeCC
Confidence 8887531 1222 1110 0 0122556544332221 122 2211235666777
Q ss_pred CCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecC-CCccccceEEEEecccCccCCCCCCCCCCCc
Q 003283 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNL-DGKWAYGLSCIEYTEFDKFGITRGPFSSNGL 525 (834)
Q Consensus 447 N~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~-dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l 525 (834)
++. ..| +-.++-.+...+++..+.+ .+... ..+-|++.. .. +|+ ++++.|=|... .
T Consensus 111 ~~~-~~~--~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~g~v~~--d~~~~~------v~~~~ekp~~~-------~--- 167 (233)
T cd06425 111 VIC-DFP--LAELLDFHKKHGAEGTILV-TKVED-PSKYGVVVH--DENTGR------IERFVEKPKVF-------V--- 167 (233)
T ss_pred Eee-CCC--HHHHHHHHHHcCCCEEEEE-EEcCC-ccccCeEEE--cCCCCE------EEEEEECCCCC-------C---
Confidence 653 333 3345666666677766664 44332 345677754 12 343 56665543321 0
Q ss_pred cccCccceeeeEEeHHHHHhh
Q 003283 526 QADFPANTNILYVDLASAELV 546 (834)
Q Consensus 526 ~s~f~~Ninnl~fsL~~L~~v 546 (834)
+ .-.|+..++|+-+.++.+
T Consensus 168 -~-~~~~~Giyi~~~~~l~~l 186 (233)
T cd06425 168 -G-NKINAGIYILNPSVLDRI 186 (233)
T ss_pred -C-CEEEEEEEEECHHHHHhc
Confidence 1 115999999998888554
No 44
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=96.81 E-value=0.065 Score=56.68 Aligned_cols=182 Identities=12% Similarity=0.125 Sum_probs=102.8
Q ss_pred EEecCC--ccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHH
Q 003283 292 IYPLGG--SADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (834)
Q Consensus 292 VlLAGG--lGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T 366 (834)
|+|||| .||||.- ..||. ++|+ .|++++++.++.+..+ .| .--++|.+.. ..+..
T Consensus 2 iIla~G~~~GtRl~plt~~~PK~--llpv-----~g~plI~~~l~~l~~~-------~g---i~~i~iv~~~---~~~~i 61 (257)
T cd06428 2 VILVGGPQKGTRFRPLSLDVPKP--LFPV-----AGKPMIHHHIEACAKV-------PD---LKEVLLIGFY---PESVF 61 (257)
T ss_pred EEEccCCCCCcccCCccCCCCcc--cCeE-----CCeeHHHHHHHHHHhc-------CC---CcEEEEEecC---CHHHH
Confidence 677888 8999986 78999 9998 6899999988887653 13 1234566665 67788
Q ss_pred HHHHHHhC-CCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeC
Q 003283 367 TSLCERLR-WFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQV 445 (834)
Q Consensus 367 ~~fle~n~-yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~v 445 (834)
.+++.+.. .+|+ .|.+..| ..|-|-|+-..... +.+....-+++.|.+.
T Consensus 62 ~~~l~~~~~~~~~---~i~~~~~----------------------~~~~Gt~~al~~a~-----~~l~~~~~~~~lv~~g 111 (257)
T cd06428 62 SDFISDAQQEFNV---PIRYLQE----------------------YKPLGTAGGLYHFR-----DQILAGNPSAFFVLNA 111 (257)
T ss_pred HHHHHhcccccCc---eEEEecC----------------------CccCCcHHHHHHHH-----HHhhccCCCCEEEEcC
Confidence 88887542 2333 2221111 12344444322221 2222223468889999
Q ss_pred CCCcccccHhHHHHhhhhhhcCCceeEEEeeecC-CCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCC
Q 003283 446 SNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNG 524 (834)
Q Consensus 446 DN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~-~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~ 524 (834)
|++. .+| +-.++-++...++++.+.+ .+.. .....-|++... ..+|+ +.++.|=|... .+
T Consensus 112 D~~~-~~d--l~~~~~~h~~~~~~~tl~~-~~~~~~~~~~yg~v~~d-~~~g~------v~~~~Ekp~~~--------~~ 172 (257)
T cd06428 112 DVCC-DFP--LQELLEFHKKHGASGTILG-TEASREQASNYGCIVED-PSTGE------VLHYVEKPETF--------VS 172 (257)
T ss_pred Ceec-CCC--HHHHHHHHHHcCCCEEEEE-EEccccccccccEEEEe-CCCCe------EEEEEeCCCCc--------cc
Confidence 9873 344 2244566666666665554 3221 112345676430 02344 33444322211 00
Q ss_pred ccccCccceeeeEEeHHHHHhh
Q 003283 525 LQADFPANTNILYVDLASAELV 546 (834)
Q Consensus 525 l~s~f~~Ninnl~fsL~~L~~v 546 (834)
...|+..++|+-+.+..+
T Consensus 173 ----~~~~~Giyi~~~~~~~~i 190 (257)
T cd06428 173 ----DLINCGVYLFSPEIFDTI 190 (257)
T ss_pred ----ceEEEEEEEECHHHHHHH
Confidence 236999999998877543
No 45
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=96.81 E-value=0.11 Score=54.00 Aligned_cols=185 Identities=13% Similarity=0.146 Sum_probs=99.9
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
++..|+||||.|+||| ||. ++|+ .|++++++.++++++.. | +.=++..+. ++.+.
T Consensus 1 ~~~~iIlA~g~s~R~~---~K~--l~~i-----~gkpll~~~l~~l~~~~-------~----i~~ivvv~~----~~~i~ 55 (239)
T cd02517 1 KVIVVIPARYASSRLP---GKP--LADI-----AGKPMIQHVYERAKKAK-------G----LDEVVVATD----DERIA 55 (239)
T ss_pred CEEEEEecCCCCCCCC---CCC--Cccc-----CCcCHHHHHHHHHHhCC-------C----CCEEEEECC----cHHHH
Confidence 4678999999999997 798 9888 79999999999887631 2 222333332 36777
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (834)
+++.+ +| +.+..+ . ...+.|.|++..++.. + ....+++.+.+.|+
T Consensus 56 ~~~~~---~~-----~~~~~~--------~------------~~~~~gt~~~~~~~~~------~-~~~~d~vlv~~gD~ 100 (239)
T cd02517 56 DAVES---FG-----GKVVMT--------S------------PDHPSGTDRIAEVAEK------L-DADDDIVVNVQGDE 100 (239)
T ss_pred HHHHH---cC-----CEEEEc--------C------------cccCchhHHHHHHHHh------c-CCCCCEEEEecCCC
Confidence 77764 22 111111 0 0124566666665532 1 11247899999999
Q ss_pred CcccccHhHHHHhhhhhhc-CCceeEEEeeecCCCC----cC-ceEEEEeecCCCccccceEEEEecccCccCCCCCCCC
Q 003283 448 VVAATDLTLLALAGIGLHH-GKKLGFASCKRSSGAT----EG-INVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFS 521 (834)
Q Consensus 448 ~La~vDP~~l~flG~~~~~-~~~~~~~~vvRK~~~~----ek-vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~ 521 (834)
++...+ .+-.++-.+... +.++.+.+ .+...+. .+ .++... .||+ +++..+-+... ..+..
T Consensus 101 Pli~~~-~l~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~---~~~~------v~~~~~~~~~~--~~~~~ 167 (239)
T cd02517 101 PLIPPE-MIDQVVAALKDDPGVDMATLA-TPISDEEELFNPNVVKVVLD---KDGY------ALYFSRSPIPY--PRDSS 167 (239)
T ss_pred CCCCHH-HHHHHHHHHHhCCCCCEEEEE-EEcCCHHHccCCCCCEEEEC---CCCC------EEEecCCCCCC--CCCCC
Confidence 887641 111223222222 34444343 3322212 12 344432 4554 34554422110 01111
Q ss_pred CCCccccCccceeeeEEeHHHHHhhhc
Q 003283 522 SNGLQADFPANTNILYVDLASAELVGS 548 (834)
Q Consensus 522 dg~l~s~f~~Ninnl~fsL~~L~~vl~ 548 (834)
+.. + .-.|+..+.|+-+.++.+.+
T Consensus 168 ~~~--~-~~~~~Giy~~~~~~~~~~~~ 191 (239)
T cd02517 168 EDF--P-YYKHIGIYAYRRDFLLRFAA 191 (239)
T ss_pred CCC--c-eeEEEEEEEECHHHHHHHHh
Confidence 101 1 12499999999998887654
No 46
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=96.78 E-value=0.036 Score=61.46 Aligned_cols=196 Identities=12% Similarity=0.114 Sum_probs=107.0
Q ss_pred EEecCCccccCCC---CCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 292 IYPLGGSADRLGL---VDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 292 VlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
|+||||.||||+- +.||. ++|+ .|+ +++++.++.+... | .-.++|.|.. ..+...
T Consensus 2 iILAaG~gtRl~plt~~~pK~--llpv-----~g~~pli~~~l~~l~~~--------g---i~~i~iv~~~---~~~~i~ 60 (361)
T TIGR02091 2 MVLAGGRGSRLSPLTKRRAKP--AVPF-----GGKYRIIDFPLSNCINS--------G---IRRIGVLTQY---KSHSLN 60 (361)
T ss_pred EEeCCCCCCccchhhhCCccc--ccee-----cceeeEeeehhhhhhhc--------C---CceEEEEecc---ChHHHH
Confidence 7899999999983 68999 9998 688 7999998887653 3 2256888887 566788
Q ss_pred HHHHHhCCCCCCC---CceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEE
Q 003283 368 SLCERLRWFGRGQ---SSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVR 443 (834)
Q Consensus 368 ~fle~n~yFGl~~---~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~v~ 443 (834)
++|.+. +++.. ..+.++ |.. ....-...|.|.|+ ++.++. .+....-+++.|.
T Consensus 61 ~~~~~~--~~~~~~~~~~~~~~-~~~--------------~~~~~~~~~~Gt~~al~~a~~------~~~~~~~~~~lv~ 117 (361)
T TIGR02091 61 RHIQRG--WDFDGFIDGFVTLL-PAQ--------------QRESGTDWYQGTADAVYQNLD------LIEDYDPEYVLIL 117 (361)
T ss_pred HHHHhc--cCccCccCCCEEEe-CCc--------------ccCCCCccccCcHHHHHHHHH------HHHhcCCCEEEEe
Confidence 888752 23211 112111 000 00011223567655 333332 2222234678888
Q ss_pred eCCCCcccccHhHHHHhhhhhhcCCceeEEEeeecCC-CCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCC
Q 003283 444 QVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSG-ATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSS 522 (834)
Q Consensus 444 ~vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~-~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~d 522 (834)
+.|++. ..| +..++-.+..++.+..+.+ .+.+. .....|++.. ..+|+ +.++.|=|... .....+
T Consensus 118 ~gD~l~-~~~--l~~~l~~~~~~~~~~ti~~-~~~~~~~~~~~g~v~~--d~~~~------v~~~~ekp~~~--~~~~~~ 183 (361)
T TIGR02091 118 SGDHIY-KMD--YEKMLDYHIESGADVTIAC-IPVPRKEASRFGVMQV--DEDGR------IVDFEEKPANP--PSIPGM 183 (361)
T ss_pred cCCEEE-cCC--HHHHHHHHHHcCCCEEEEE-EecChHhcccccEEEE--CCCCC------EEEEEECCCCc--cccccc
Confidence 999843 332 3233444444454444443 33221 2334677754 12343 44554433110 000000
Q ss_pred CCccccCccceeeeEEeHHHHHhhhc
Q 003283 523 NGLQADFPANTNILYVDLASAELVGS 548 (834)
Q Consensus 523 g~l~s~f~~Ninnl~fsL~~L~~vl~ 548 (834)
.. .+-.|+..++|+-+.+.+.+.
T Consensus 184 -~~--~~~~~~Giyi~~~~~l~~~l~ 206 (361)
T TIGR02091 184 -PD--FALASMGIYIFDKDVLKELLE 206 (361)
T ss_pred -cc--ccEEeeeEEEEcHHHHHHHHH
Confidence 11 134599999999988876654
No 47
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=96.78 E-value=0.064 Score=56.70 Aligned_cols=66 Identities=14% Similarity=0.139 Sum_probs=50.5
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 291 vVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
+|+||||.||||. ...||. ++|+ .|+++++..++.+.+. | .-.++|-++. ..+.+.
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~--llpv-----~~~p~i~~~~~~~~~~--------g---i~~i~iv~~~---~~~~i~ 59 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKP--MVEI-----GGRPILWHIMKIYSHY--------G---HNDFILCLGY---KGHVIK 59 (253)
T ss_pred CEEEecCCccccCCccCCCCce--EEEE-----CCEEHHHHHHHHHHhC--------C---CceEEEECCC---CHHHHH
Confidence 3789999999997 478999 9998 6899998776666442 3 2346777776 678899
Q ss_pred HHHHHhCCCC
Q 003283 368 SLCERLRWFG 377 (834)
Q Consensus 368 ~fle~n~yFG 377 (834)
+++++...+|
T Consensus 60 ~~~~~~~~~~ 69 (253)
T cd02524 60 EYFLNYFLHN 69 (253)
T ss_pred HHHHhhhhhc
Confidence 9998866554
No 48
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=96.75 E-value=0.04 Score=62.93 Aligned_cols=176 Identities=13% Similarity=0.077 Sum_probs=101.9
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHHH
Q 003283 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLC 370 (834)
Q Consensus 291 vVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~~fl 370 (834)
.|+||||.||||+...||- ++|+ .|++++++.++.+... + -.++|.|+. ..+.+.+++
T Consensus 3 avIlA~G~gtRl~~~~pK~--l~~v-----~gkpli~~~l~~l~~~--------~----~~i~vv~~~---~~~~i~~~~ 60 (448)
T PRK14357 3 ALVLAAGKGTRMKSKIPKV--LHKI-----SGKPMINWVIDTAKKV--------A----QKVGVVLGH---EAELVKKLL 60 (448)
T ss_pred EEEECCCCCccCCCCCCce--eeEE-----CCeeHHHHHHHHHHhc--------C----CcEEEEeCC---CHHHHHHhc
Confidence 5889999999999888999 9998 7899999998877652 2 135666665 345555554
Q ss_pred HHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCCCCc
Q 003283 371 ERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSNVV 449 (834)
Q Consensus 371 e~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~v~~vDN~L 449 (834)
.. .+.++.|+ .|.|-++ ++.++. .++ .-+++++.+.|+++
T Consensus 61 ~~---------~~~~~~~~----------------------~~~g~~~ai~~a~~---~l~-----~~~~vlv~~gD~p~ 101 (448)
T PRK14357 61 PE---------WVKIFLQE----------------------EQLGTAHAVMCARD---FIE-----PGDDLLILYGDVPL 101 (448)
T ss_pred cc---------ccEEEecC----------------------CCCChHHHHHHHHH---hcC-----cCCeEEEEeCCccc
Confidence 31 12223331 1224333 333332 121 13689999999986
Q ss_pred ccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCccccC
Q 003283 450 AATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADF 529 (834)
Q Consensus 450 a~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s~f 529 (834)
...+ .+-.++-.+...++++.+.+ .+...+ ..-|++.. .+|+ +..+|...-+... . . .+
T Consensus 102 i~~~-~i~~l~~~~~~~~~d~ti~~-~~~~~~-~~~g~v~~---d~g~----v~~~e~~~~~~~~-------~-~---~~ 160 (448)
T PRK14357 102 ISEN-TLKRLIEEHNRKGADVTILV-ADLEDP-TGYGRIIR---DGGK----YRIVEDKDAPEEE-------K-K---IK 160 (448)
T ss_pred CCHH-HHHHHHHHHHhcCCeEEEEE-EEcCCC-CCcEEEEE---cCCe----EEEEECCCCChHH-------h-c---Cc
Confidence 5431 12223444445566665544 333323 23566643 3666 5566643221110 0 0 12
Q ss_pred ccceeeeEEeHHHHHhhhc
Q 003283 530 PANTNILYVDLASAELVGS 548 (834)
Q Consensus 530 ~~Ninnl~fsL~~L~~vl~ 548 (834)
-.|+..++|+-+.|.+.+.
T Consensus 161 ~~~~GiYv~~~~~l~~~~~ 179 (448)
T PRK14357 161 EINTGIYVFSGDFLLEVLP 179 (448)
T ss_pred EEEeEEEEEEHHHHHHHHH
Confidence 3599999999888877664
No 49
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=96.75 E-value=0.0022 Score=65.39 Aligned_cols=61 Identities=21% Similarity=0.402 Sum_probs=48.6
Q ss_pred EEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHH
Q 003283 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSL 369 (834)
Q Consensus 290 avVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~~f 369 (834)
..|+||||.|||||. .||. ++++ .|++++++.++.+... + .-.+++-||. .++.|..+
T Consensus 2 ~aIILAgG~gsRmg~-~~K~--Ll~i-----~GkplI~~vi~~l~~~--------~---i~~I~Vv~~~---~~~~~~~~ 59 (183)
T TIGR00454 2 DALIMAGGKGTRLGG-VEKP--LIEV-----CGRCLIDHVLSPLLKS--------K---VNNIIIATSP---HTPKTEEY 59 (183)
T ss_pred eEEEECCccCccCCC-CCce--EeEE-----CCEEHHHHHHHHHHhC--------C---CCEEEEEeCC---CHHHHHHH
Confidence 458999999999985 7898 9998 7999999999988653 1 1246777886 67788888
Q ss_pred HHH
Q 003283 370 CER 372 (834)
Q Consensus 370 le~ 372 (834)
+++
T Consensus 60 l~~ 62 (183)
T TIGR00454 60 INS 62 (183)
T ss_pred Hhh
Confidence 875
No 50
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=96.69 E-value=0.0025 Score=66.48 Aligned_cols=65 Identities=15% Similarity=0.276 Sum_probs=49.3
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHH
Q 003283 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (834)
Q Consensus 289 vavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~~ 368 (834)
++.|+||||.|+|||.+.||- ++++ .|++++++.+++++... ..-.++|.|++ .......+
T Consensus 3 ~~~iIlAaG~g~R~g~~~~K~--l~~l-----~gkpll~~~i~~~~~~~----------~~~~ivVv~~~--~~~~~~~~ 63 (230)
T PRK13385 3 YELIFLAAGQGKRMNAPLNKM--WLDL-----VGEPIFIHALRPFLADN----------RCSKIIIVTQA--QERKHVQD 63 (230)
T ss_pred eEEEEECCeeccccCCCCCcc--eeEE-----CCeEHHHHHHHHHHcCC----------CCCEEEEEeCh--hhHHHHHH
Confidence 688999999999999888999 9998 79999999999876532 12356677766 34455556
Q ss_pred HHHH
Q 003283 369 LCER 372 (834)
Q Consensus 369 fle~ 372 (834)
++++
T Consensus 64 ~~~~ 67 (230)
T PRK13385 64 LMKQ 67 (230)
T ss_pred HHHh
Confidence 6665
No 51
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=96.51 E-value=0.054 Score=62.20 Aligned_cols=179 Identities=14% Similarity=0.147 Sum_probs=100.5
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
++..|+||||.||||+...||- ++|+ .|+++++..++++.+. | .-.+++.++. ..+...
T Consensus 5 ~~~aiIlAaG~gtRl~~~~pK~--l~~i-----~gkpli~~~i~~l~~~--------g---i~~i~vv~~~---~~~~i~ 63 (456)
T PRK09451 5 AMSVVILAAGKGTRMYSDLPKV--LHTL-----AGKPMVQHVIDAANEL--------G---AQHVHLVYGH---GGDLLK 63 (456)
T ss_pred CceEEEEcCCCCCcCCCCCChh--ccee-----CChhHHHHHHHHHHhc--------C---CCcEEEEECC---CHHHHH
Confidence 5778999999999999888999 9888 7999999998877442 3 2356677776 445555
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~v~~vD 446 (834)
+++.. ..+.+..|+ .+.|-|+ ++.++. .+ . .-+++.|.+.|
T Consensus 64 ~~~~~--------~~~~~i~~~----------------------~~~Gt~~al~~a~~------~l-~-~~~~vlV~~gD 105 (456)
T PRK09451 64 QTLAD--------EPLNWVLQA----------------------EQLGTGHAMQQAAP------FF-A-DDEDILMLYGD 105 (456)
T ss_pred Hhhcc--------CCcEEEECC----------------------CCCCcHHHHHHHHH------hh-c-cCCcEEEEeCC
Confidence 55532 122221111 2445444 444332 12 1 23689999999
Q ss_pred CCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcc
Q 003283 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (834)
Q Consensus 447 N~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (834)
.++...+ .+-.++-.. ......+.+ .+-..+ ..-|++.. .+|+ ...++|....++. ...
T Consensus 106 ~P~i~~~-~i~~l~~~~--~~~~~~i~~-~~~~~~-~~yG~v~~---~~g~---V~~~~EKp~~~~~----------~~~ 164 (456)
T PRK09451 106 VPLISVE-TLQRLRDAK--PQGGIGLLT-VKLDNP-TGYGRITR---ENGK---VVGIVEQKDATDE----------QRQ 164 (456)
T ss_pred cccCCHH-HHHHHHHHh--hcCCEEEEE-EEcCCC-CCceEEEe---cCCe---EEEEEECCCCChH----------Hhh
Confidence 9875532 121223222 222223332 322223 23566533 4555 1234443222111 000
Q ss_pred ccCc-cceeeeEEeHHHHHhhhc
Q 003283 527 ADFP-ANTNILYVDLASAELVGS 548 (834)
Q Consensus 527 s~f~-~Ninnl~fsL~~L~~vl~ 548 (834)
.. .|+..++|+-+.|.+.++
T Consensus 165 --~~~~~~GiYi~~~~~l~~~l~ 185 (456)
T PRK09451 165 --IQEINTGILVANGADLKRWLA 185 (456)
T ss_pred --ccEEEEEEEEEEHHHHHHHHH
Confidence 12 499999999888877665
No 52
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=96.44 E-value=0.18 Score=53.61 Aligned_cols=190 Identities=13% Similarity=0.109 Sum_probs=103.0
Q ss_pred EEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 291 vVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
+|+||||.||||+- ..||- ++|+ .|+++++..++.+.+. | .--++|.++. ..+...
T Consensus 2 avilaaG~gtRl~~~t~~~pK~--llpv-----~g~pii~~~l~~l~~~--------g---i~~i~iv~~~---~~~~i~ 60 (254)
T TIGR02623 2 AVILAGGLGTRISEETHLRPKP--MVEI-----GGKPILWHIMKIYSHH--------G---INDFIICCGY---KGYVIK 60 (254)
T ss_pred EEEEcCccccccCccccCCCcc--eeEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEcCC---CHHHHH
Confidence 47789999999964 48999 9998 6899998877776542 3 2345666665 678888
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCccc-ccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWL-VMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~-l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vD 446 (834)
++|.+...+|. .-++. ++++.+.... ...++. .. ......|-|.|+-.....+ .+ +-+++.|.+.|
T Consensus 61 ~~~~~~~~~~~-~~~~~-~~~~~~~~~~-~~~~~~~~~--~~~~~~~~gt~~al~~~~~--~i------~~e~flv~~gD 127 (254)
T TIGR02623 61 EYFANYFLHMS-DVTFH-MADNTMEVHH-KRVEPWRVT--LVDTGESTQTGGRLKRVRE--YL------DDEAFCFTYGD 127 (254)
T ss_pred HHHHhhhhccc-CeeEE-eccccccccc-ccCCcccee--eeecCCcCCcHHHHHHHHH--hc------CCCeEEEEeCC
Confidence 99876443322 11222 2333322221 111000 00 0011246777764433322 11 13567788999
Q ss_pred CCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcc
Q 003283 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (834)
Q Consensus 447 N~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (834)
++ ...|. -.++-++...+++..+.. +.. ...-|++.. .+|+ +.++.|=|.. ..
T Consensus 128 ~i-~~~dl--~~~~~~h~~~~~d~tl~~-~~~---~~~yG~v~~---d~~~------V~~~~Ekp~~--------~~--- 180 (254)
T TIGR02623 128 GV-ADIDI--KALIAFHRKHGKKATVTA-VQP---PGRFGALDL---EGEQ------VTSFQEKPLG--------DG--- 180 (254)
T ss_pred eE-ecCCH--HHHHHHHHHcCCCEEEEE-ecC---CCcccEEEE---CCCe------EEEEEeCCCC--------CC---
Confidence 85 34443 244555555566665443 322 234577754 2343 3333331211 11
Q ss_pred ccCccceeeeEEeHHHH
Q 003283 527 ADFPANTNILYVDLASA 543 (834)
Q Consensus 527 s~f~~Ninnl~fsL~~L 543 (834)
-..|+..++|+-+.+
T Consensus 181 --~~i~~Giyi~~~~il 195 (254)
T TIGR02623 181 --GWINGGFFVLNPSVL 195 (254)
T ss_pred --CeEEEEEEEEcHHHH
Confidence 125899999997766
No 53
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=96.43 E-value=0.0033 Score=66.34 Aligned_cols=65 Identities=18% Similarity=0.284 Sum_probs=48.9
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHH
Q 003283 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (834)
Q Consensus 289 vavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~~ 368 (834)
+++|+||||.|+|||.+.||- .+++ .|++++++.++.+++.. ..--++|..+. +..+.+++
T Consensus 1 V~aIilAaG~G~R~g~~~pKQ--f~~l-----~Gkpvl~~tl~~f~~~~----------~i~~Ivvv~~~--~~~~~~~~ 61 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGSGIPKQ--FLEL-----GGKPVLEYTLEAFLASP----------EIDEIVVVVPP--EDIDYVEE 61 (221)
T ss_dssp EEEEEEESS-STCCTSSS-GG--GSEE-----TTEEHHHHHHHHHHTTT----------TESEEEEEESG--GGHHHHHH
T ss_pred CEEEEeCCccchhcCcCCCCe--eeEE-----CCeEeHHHHHHHHhcCC----------CCCeEEEEecc--hhHHHHHH
Confidence 578999999999999999998 8888 89999999888876532 12235666666 56677777
Q ss_pred HHHH
Q 003283 369 LCER 372 (834)
Q Consensus 369 fle~ 372 (834)
++.+
T Consensus 62 ~~~~ 65 (221)
T PF01128_consen 62 LLSK 65 (221)
T ss_dssp HHHH
T ss_pred hhcC
Confidence 7776
No 54
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=96.43 E-value=0.0046 Score=66.36 Aligned_cols=42 Identities=19% Similarity=0.254 Sum_probs=37.7
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAR 336 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~l 336 (834)
+++.|+||||.|+|||...||- .+++ .|++++++.++.+...
T Consensus 24 ~i~aIILAAG~gsRmg~~~pKq--ll~l-----~Gkpll~~tl~~~~~~ 65 (252)
T PLN02728 24 SVSVILLAGGVGKRMGANMPKQ--YLPL-----LGQPIALYSLYTFARM 65 (252)
T ss_pred ceEEEEEcccccccCCCCCCcc--eeEE-----CCeEHHHHHHHHHHhC
Confidence 6889999999999999989999 9988 7999999988877664
No 55
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=96.41 E-value=0.0051 Score=62.63 Aligned_cols=61 Identities=20% Similarity=0.397 Sum_probs=49.4
Q ss_pred EEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHH
Q 003283 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSL 369 (834)
Q Consensus 290 avVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~~f 369 (834)
..|+||||.|||||. .-|- +++| +||.+++..++.+++.- + -+++-||. ++..|++|
T Consensus 2 ~~iiMAGGrGtRmg~-~EKP--lleV-----~GkpLI~~v~~al~~~~-------d-----~i~v~isp---~tp~t~~~ 58 (177)
T COG2266 2 MAIIMAGGRGTRMGR-PEKP--LLEV-----CGKPLIDRVLEALRKIV-------D-----EIIVAISP---HTPKTKEY 58 (177)
T ss_pred ceEEecCCcccccCC-CcCc--chhh-----CCccHHHHHHHHHHhhc-------C-----cEEEEeCC---CCHhHHHH
Confidence 468999999999996 4465 8887 99999998888776621 2 36888998 88999999
Q ss_pred HHHh
Q 003283 370 CERL 373 (834)
Q Consensus 370 le~n 373 (834)
+++-
T Consensus 59 ~~~~ 62 (177)
T COG2266 59 LESV 62 (177)
T ss_pred HHhc
Confidence 9973
No 56
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=96.40 E-value=0.2 Score=52.09 Aligned_cols=103 Identities=15% Similarity=0.166 Sum_probs=66.3
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
+++.|+||||.++||+ .|- ++|+ .|++++++.++++.+.. + .-.++|-| . ++.+.
T Consensus 2 ~~~aiIlA~g~s~R~~---~K~--l~~i-----~GkPli~~~i~~l~~~~-------~---~~~ivv~t-~----~~~i~ 56 (238)
T PRK13368 2 KVVVVIPARYGSSRLP---GKP--LLDI-----LGKPMIQHVYERAAQAA-------G---VEEVYVAT-D----DQRIE 56 (238)
T ss_pred cEEEEEecCCCCCCCC---CCc--cCcc-----CCcCHHHHHHHHHHhcC-------C---CCeEEEEC-C----hHHHH
Confidence 4678999999999996 488 8888 79999999999887631 1 12334433 2 36788
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (834)
+++++ +|. .+ +.+. ...+.|.+.+..++.. + +.+++.+.+.|+
T Consensus 57 ~~~~~---~~~---~v--~~~~--------------------~~~~~g~~~~~~a~~~------~---~~d~~lv~~~D~ 99 (238)
T PRK13368 57 DAVEA---FGG---KV--VMTS--------------------DDHLSGTDRLAEVMLK------I---EADIYINVQGDE 99 (238)
T ss_pred HHHHH---cCC---eE--EecC--------------------ccCCCccHHHHHHHHh------C---CCCEEEEEcCCc
Confidence 88875 232 11 1110 0113455555544322 1 567899999999
Q ss_pred Ccccc
Q 003283 448 VVAAT 452 (834)
Q Consensus 448 ~La~v 452 (834)
++...
T Consensus 100 P~i~~ 104 (238)
T PRK13368 100 PMIRP 104 (238)
T ss_pred CcCCH
Confidence 98764
No 57
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=96.38 E-value=0.042 Score=56.75 Aligned_cols=129 Identities=15% Similarity=0.177 Sum_probs=76.6
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 291 vVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
.|+||||.|+||+ ...||. ++|+ .|++++++.++.+.+. | .-.++|.+.. .-.+.+.
T Consensus 3 aVILAgG~g~R~~plt~~~pK~--Llpv-----~g~pli~~~l~~l~~~--------g---~~~iivv~~~--~~~~~i~ 62 (214)
T cd04198 3 AVILAGGGGSRLYPLTDNIPKA--LLPV-----ANKPMIWYPLDWLEKA--------G---FEDVIVVVPE--EEQAEIS 62 (214)
T ss_pred EEEEeCCCCCcCCccccCCCcc--cCEE-----CCeeHHHHHHHHHHHC--------C---CCeEEEEECH--HHHHHHH
Confidence 4669999999998 578999 9998 6899999988887652 3 2245677775 2345678
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (834)
+++++..+ ......... .+ ....+-|-|+..+...+. + .+.+.|.+.|.
T Consensus 63 ~~l~~~~~-~~~~~~~~~-------~~--------------~~~~~~gt~~al~~~~~~--i-------~~d~lv~~~D~ 111 (214)
T cd04198 63 TYLRSFPL-NLKQKLDEV-------TI--------------VLDEDMGTADSLRHIRKK--I-------KKDFLVLSCDL 111 (214)
T ss_pred HHHHhccc-ccCcceeEE-------Ee--------------cCCCCcChHHHHHHHHhh--c-------CCCEEEEeCcc
Confidence 88876431 000000000 00 012467888877776653 1 24567777774
Q ss_pred CcccccHhHHHHhhhhhhcCCceeEE
Q 003283 448 VVAATDLTLLALAGIGLHHGKKLGFA 473 (834)
Q Consensus 448 ~La~vDP~~l~flG~~~~~~~~~~~~ 473 (834)
+ ...| +..++-.+...++.+.+.
T Consensus 112 i-~~~~--l~~~l~~h~~~~~~~t~~ 134 (214)
T cd04198 112 I-TDLP--LIELVDLHRSHDASLTVL 134 (214)
T ss_pred c-cccC--HHHHHHHHhccCCcEEEE
Confidence 3 2233 223455555555555554
No 58
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=96.32 E-value=0.008 Score=62.16 Aligned_cols=100 Identities=26% Similarity=0.397 Sum_probs=67.4
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
....|+||||+|.|| .+|. ++++ .|++++|+.++++... +. .++|.... +.+.
T Consensus 4 ~~~~vILAGG~srRm---~dK~--l~~~-----~g~~lie~v~~~L~~~-----------~~-~vvi~~~~---~~~~-- 56 (192)
T COG0746 4 PMTGVILAGGKSRRM---RDKA--LLPL-----NGRPLIEHVIDRLRPQ-----------VD-VVVISANR---NQGR-- 56 (192)
T ss_pred CceEEEecCCccccc---cccc--ccee-----CCeEHHHHHHHHhccc-----------CC-EEEEeCCC---chhh--
Confidence 567899999999999 8898 9888 8999999999988653 34 56666655 3221
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (834)
+..|| +|.+.|.. +|.|-+ .|++.-|...+-+|++|..+|.
T Consensus 57 -----~~~~g-------------~~vv~D~~---------------~~~GPL------~Gi~~al~~~~~~~~~v~~~D~ 97 (192)
T COG0746 57 -----YAEFG-------------LPVVPDEL---------------PGFGPL------AGILAALRHFGTEWVLVLPCDM 97 (192)
T ss_pred -----hhccC-------------CceeecCC---------------CCCCCH------HHHHHHHHhCCCCeEEEEecCC
Confidence 22222 45554221 111211 2344444556689999999999
Q ss_pred Cccccc
Q 003283 448 VVAATD 453 (834)
Q Consensus 448 ~La~vD 453 (834)
+....|
T Consensus 98 P~i~~~ 103 (192)
T COG0746 98 PFIPPE 103 (192)
T ss_pred CCCCHH
Confidence 999873
No 59
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.30 E-value=0.0052 Score=60.52 Aligned_cols=50 Identities=24% Similarity=0.414 Sum_probs=39.6
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCC
Q 003283 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (834)
Q Consensus 289 vavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~ 358 (834)
++.|+||||.|+|||- +|. ++++ .|+++++..++++... + .-+++|-|+.
T Consensus 1 ~~~vIlAgG~s~R~g~--~K~--l~~~-----~g~~li~~~i~~l~~~--------~---~~~i~vv~~~ 50 (186)
T cd04182 1 IAAIILAAGRSSRMGG--NKL--LLPL-----DGKPLLRHALDAALAA--------G---LSRVIVVLGA 50 (186)
T ss_pred CeEEEECCCCCCCCCC--Cce--eCee-----CCeeHHHHHHHHHHhC--------C---CCcEEEECCC
Confidence 3678999999999985 898 9888 7999999999987653 1 1256676765
No 60
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=96.21 E-value=0.087 Score=54.42 Aligned_cols=60 Identities=30% Similarity=0.408 Sum_probs=46.0
Q ss_pred EEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHH
Q 003283 292 IYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (834)
Q Consensus 292 VlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~~ 368 (834)
|+||||.||||+- ..||. ++|+ .|+++++..++.+... | .-.++|.|.. ..+...+
T Consensus 2 iIlAaG~g~Rl~~lt~~~pK~--l~~~-----~g~~li~~~l~~l~~~--------g---i~~i~vv~~~---~~~~~~~ 60 (229)
T cd02523 2 IILAAGRGSRLRPLTEDRPKC--LLEI-----NGKPLLERQIETLKEA--------G---IDDIVIVTGY---KKEQIEE 60 (229)
T ss_pred EEEeccCccccchhhCCCCce--eeeE-----CCEEHHHHHHHHHHHC--------C---CceEEEEecc---CHHHHHH
Confidence 7899999999985 56999 9998 6899999988877552 3 2246777776 5667777
Q ss_pred HHHH
Q 003283 369 LCER 372 (834)
Q Consensus 369 fle~ 372 (834)
++.+
T Consensus 61 ~~~~ 64 (229)
T cd02523 61 LLKK 64 (229)
T ss_pred HHhc
Confidence 7764
No 61
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=96.21 E-value=0.15 Score=58.27 Aligned_cols=62 Identities=15% Similarity=0.282 Sum_probs=46.4
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHH
Q 003283 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (834)
Q Consensus 289 vavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~~ 368 (834)
...|+||||.||||+...||. ++|+ .|++++++.++++... | .-.++|.++. ..+...+
T Consensus 3 ~~avIlAaG~g~Rl~~~~pK~--ll~i-----~Gkpli~~~l~~l~~~--------g---i~~iivvv~~---~~~~i~~ 61 (458)
T PRK14354 3 RYAIILAAGKGTRMKSKLPKV--LHKV-----CGKPMVEHVVDSVKKA--------G---IDKIVTVVGH---GAEEVKE 61 (458)
T ss_pred ceEEEEeCCCCcccCCCCChh--hCEe-----CCccHHHHHHHHHHhC--------C---CCeEEEEeCC---CHHHHHH
Confidence 457899999999999889999 9998 6899999999988542 3 1245666665 4555555
Q ss_pred HHH
Q 003283 369 LCE 371 (834)
Q Consensus 369 fle 371 (834)
++.
T Consensus 62 ~~~ 64 (458)
T PRK14354 62 VLG 64 (458)
T ss_pred Hhc
Confidence 543
No 62
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=96.19 E-value=0.011 Score=64.85 Aligned_cols=64 Identities=14% Similarity=0.343 Sum_probs=52.2
Q ss_pred cEEEEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchH
Q 003283 288 ELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (834)
Q Consensus 288 kvavVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~ 364 (834)
.+-+|+||||.||||. ..-||- |+|| .||++++++++.+... | .--++|.|+. ..+
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKp--LvpV-----~gkPiI~~vl~~l~~~--------G---i~~ivivv~~---~~~ 61 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKE--MLPI-----VDKPMIQYIVDEIVAA--------G---IKEIVLVTHA---SKN 61 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCce--eeEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEecC---ChH
Confidence 4567999999999998 477999 9998 6899999999888653 4 2357888887 778
Q ss_pred HHHHHHHH
Q 003283 365 RITSLCER 372 (834)
Q Consensus 365 ~T~~fle~ 372 (834)
...++|..
T Consensus 62 ~i~~~~~~ 69 (297)
T TIGR01105 62 AVENHFDT 69 (297)
T ss_pred HHHHHHhc
Confidence 88999864
No 63
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=96.11 E-value=0.0058 Score=62.64 Aligned_cols=39 Identities=26% Similarity=0.403 Sum_probs=34.4
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCC-CcchHHHHHHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCG-RTLLEGLIRDLQA 335 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sg-kTlLql~~e~I~~ 335 (834)
+++.|+||||+++||| .+|. ++++ .| +|+++..++++..
T Consensus 8 ~i~~vILAgG~s~RmG--~~K~--ll~~-----~g~~~ll~~~i~~l~~ 47 (196)
T PRK00560 8 NIPCVILAGGKSSRMG--ENKA--LLPF-----GSYSSLLEYQYTRLLK 47 (196)
T ss_pred CceEEEECCcccccCC--CCce--EEEe-----CCCCcHHHHHHHHHHH
Confidence 7889999999999998 5788 9888 67 9999999998854
No 64
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=96.08 E-value=0.015 Score=61.82 Aligned_cols=66 Identities=18% Similarity=0.302 Sum_probs=55.2
Q ss_pred EEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHH
Q 003283 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSL 369 (834)
Q Consensus 290 avVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~~f 369 (834)
..|+||.|.|+|||-+.||. ++.+ .|+++++.++++|... | ..-++|.|+. ...+-..+|
T Consensus 5 kavILAAG~GsRlg~~~PK~--Lvev-----~gr~ii~~~i~~L~~~--------g---i~e~vvV~~g--~~~~lve~~ 64 (239)
T COG1213 5 KAVILAAGFGSRLGPDIPKA--LVEV-----GGREIIYRTIENLAKA--------G---ITEFVVVTNG--YRADLVEEF 64 (239)
T ss_pred eEEEEecccccccCCCCCch--hhhc-----CCeEeHHHHHHHHHHc--------C---CceEEEEecc--chHHHHHHH
Confidence 46889999999999999999 9888 6999999888887653 3 4568999977 488888999
Q ss_pred HHHhCC
Q 003283 370 CERLRW 375 (834)
Q Consensus 370 le~n~y 375 (834)
+.++++
T Consensus 65 l~~~~~ 70 (239)
T COG1213 65 LKKYPF 70 (239)
T ss_pred HhcCCc
Confidence 998774
No 65
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=95.99 E-value=0.13 Score=52.49 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=33.6
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAR 336 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~l 336 (834)
+++.|+||||.|+||+ .|- ++++ .|++++++.++.+++.
T Consensus 1 ~~~~iIlA~G~s~R~~---~K~--l~~l-----~Gkpll~~~l~~l~~~ 39 (223)
T cd02513 1 KILAIIPARGGSKGIP---GKN--IRPL-----GGKPLIAWTIEAALES 39 (223)
T ss_pred CeEEEEecCCCCCCCC---Ccc--cchh-----CCccHHHHHHHHHHhC
Confidence 4688999999999996 487 8777 8999999999998764
No 66
>PRK10122 GalU regulator GalF; Provisional
Probab=95.92 E-value=0.022 Score=62.49 Aligned_cols=64 Identities=14% Similarity=0.344 Sum_probs=52.4
Q ss_pred CcEEEEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCch
Q 003283 287 PELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 363 (834)
Q Consensus 287 ~kvavVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th 363 (834)
.++.+|+||||.||||. ...||- ++|| .||+++++.++.+... | .--++|+|.. ..
T Consensus 2 ~~mkavIlAaG~GtRl~PlT~~~PK~--llpi-----~gkpiI~~~l~~l~~~--------G---i~~i~iv~~~---~~ 60 (297)
T PRK10122 2 TNLKAVIPVAGLGMHMLPATKAIPKE--MLPI-----VDKPMIQYIVDEIVAA--------G---IKEIVLVTHA---SK 60 (297)
T ss_pred CceEEEEECCcCCcccCcccCCCCce--eeEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEcCC---Ch
Confidence 35778999999999998 578999 9998 6899999999888663 4 2356888876 78
Q ss_pred HHHHHHHH
Q 003283 364 ERITSLCE 371 (834)
Q Consensus 364 ~~T~~fle 371 (834)
+...++|.
T Consensus 61 ~~i~~~~~ 68 (297)
T PRK10122 61 NAVENHFD 68 (297)
T ss_pred HHHHHHHh
Confidence 88889886
No 67
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=95.92 E-value=0.12 Score=60.18 Aligned_cols=195 Identities=13% Similarity=0.149 Sum_probs=100.9
Q ss_pred EEEecCCccccCC----CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHH
Q 003283 291 EIYPLGGSADRLG----LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (834)
Q Consensus 291 vVlLAGGlGTRLG----~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T 366 (834)
.|+||||.||||+ ...||- ++|+. .++|++|..++++..+ + + -..+|.|+. .-....
T Consensus 3 ~vILAgG~GtRl~PlS~~~~PK~--~l~l~----g~~~ll~~tl~~l~~~--------~--~-~~iviv~~~--~~~~~~ 63 (468)
T TIGR01479 3 PVILAGGSGTRLWPLSRELYPKQ--FLALV----GDLTMLQQTLKRLAGL--------P--C-SSPLVICNE--EHRFIV 63 (468)
T ss_pred EEEecCcccccCCccccCCCCCc--eeEcC----CCCcHHHHHHHHHhcC--------C--C-cCcEEecCH--HHHHHH
Confidence 5899999999998 347999 99984 4589999999987653 2 1 134477775 222344
Q ss_pred HHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH--HHHHHHhcCchHHHHH--cCceEEEE
Q 003283 367 TSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA--IWKLAHDKGIFKWFHD--NGRKGATV 442 (834)
Q Consensus 367 ~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGd--Iy~aL~~sGlLd~l~~--~Gikyi~v 442 (834)
.+.+++ ||++..+ +..| |. |-|-|+ .+.++ .+.+ .+=.++.|
T Consensus 64 ~~~l~~---~~~~~~~--~i~E---p~-------------------~~gTa~ai~~aa~-------~~~~~~~~~~~vlV 109 (468)
T TIGR01479 64 AEQLRE---IGKLASN--IILE---PV-------------------GRNTAPAIALAAL-------LAARRNGEDPLLLV 109 (468)
T ss_pred HHHHHH---cCCCcce--EEec---cc-------------------ccCchHHHHHHHH-------HHHHHHCCCcEEEE
Confidence 555554 3332221 1222 11 111221 11111 1212 23457899
Q ss_pred EeCCCCcccccHhHHHHhhhhh---hcCCceeEEEeeecCCCCcCceEEEEeecCC--CccccceEEEEecccCccCCCC
Q 003283 443 RQVSNVVAATDLTLLALAGIGL---HHGKKLGFASCKRSSGATEGINVLIEKKNLD--GKWAYGLSCIEYTEFDKFGITR 517 (834)
Q Consensus 443 ~~vDN~La~vDP~~l~flG~~~---~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~d--Gk~~~~~~vVEYsEl~~~~~~~ 517 (834)
.+.|+++... ..|-.++-.+. ..+.-+.+. .+...+..+-|.+......+ +. ..|..+-|=|+...+.
T Consensus 110 l~~D~~i~~~-~~f~~~l~~~~~~a~~~~lvtlg--i~p~~p~t~YGyI~~~~~~~~~~~----~~V~~f~EKP~~~~a~ 182 (468)
T TIGR01479 110 LAADHVITDE-DAFQAAVKLAMPAAAEGKLVTFG--IVPTHPETGYGYIRRGEPLAGEDV----YQVQRFVEKPDLATAQ 182 (468)
T ss_pred ecCceeecCH-HHHHHHHHHHHHHHhcCCEEEEE--ecCCCCCCCceEEEeCCccCCCCc----eEEeEEEECCChHHHH
Confidence 9999887531 12322333221 222222222 33344556788886410001 11 1233333333321011
Q ss_pred CCCCCCCccccCccceeeeEEeHHHHHhhhcc
Q 003283 518 GPFSSNGLQADFPANTNILYVDLASAELVGSS 549 (834)
Q Consensus 518 ~~~~dg~l~s~f~~Ninnl~fsL~~L~~vl~~ 549 (834)
.-..+| .|-.|...+.|+.+.+.+.+.+
T Consensus 183 ~~l~~g----~~~wNsGif~~~~~~ll~~l~~ 210 (468)
T TIGR01479 183 AYLESG----DYYWNSGMFLFRASRYLAELKK 210 (468)
T ss_pred HHHhcC----CeEEEeeEEEEEHHHHHHHHHH
Confidence 011112 1445999999999999999876
No 68
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=95.89 E-value=0.0084 Score=59.61 Aligned_cols=48 Identities=23% Similarity=0.354 Sum_probs=38.7
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCC
Q 003283 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (834)
Q Consensus 291 vVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~ 358 (834)
+|+||||.|+||| .||. ++++ .|+++++..++++++. + .-+++|.|+.
T Consensus 2 ~iIla~G~s~R~g--~~K~--ll~~-----~g~pll~~~i~~l~~~--------~---~~~iivv~~~ 49 (188)
T TIGR03310 2 AIILAAGLSSRMG--QNKL--LLPY-----KGKTILEHVVDNALRL--------F---FDEVILVLGH 49 (188)
T ss_pred eEEECCCCcccCC--CCce--eccc-----CCeeHHHHHHHHHHHc--------C---CCcEEEEeCC
Confidence 5899999999998 5898 8887 7999999999888653 2 2356777776
No 69
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=95.71 E-value=0.0091 Score=59.60 Aligned_cols=38 Identities=24% Similarity=0.444 Sum_probs=32.9
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHH
Q 003283 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQ 334 (834)
Q Consensus 289 vavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~ 334 (834)
++.|+||||.|+|||- .||. ++++ .|+++++..++.+.
T Consensus 1 ~~~iILAgG~s~Rmg~-~~K~--l~~i-----~g~pll~~~l~~l~ 38 (186)
T TIGR02665 1 ISGVILAGGRARRMGG-RDKG--LVEL-----GGKPLIEHVLARLR 38 (186)
T ss_pred CeEEEEcCCccccCCC-CCCc--eeEE-----CCEEHHHHHHHHHH
Confidence 3678999999999983 3998 9888 79999999999875
No 70
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=95.70 E-value=0.0069 Score=58.89 Aligned_cols=48 Identities=21% Similarity=0.462 Sum_probs=39.5
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCC
Q 003283 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (834)
Q Consensus 291 vVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~ 358 (834)
+|+||||.|+|||- ||. ++++ .|+++++..++++.... .=+++|.+..
T Consensus 1 ~vILa~G~s~Rmg~--~K~--l~~i-----~g~~li~~~l~~l~~~~-----------~~~Ivvv~~~ 48 (160)
T PF12804_consen 1 AVILAAGKSSRMGG--PKA--LLPI-----GGKPLIERVLEALREAG-----------VDDIVVVTGE 48 (160)
T ss_dssp EEEEESSSCGGGTS--CGG--GSEE-----TTEEHHHHHHHHHHHHT-----------ESEEEEEEST
T ss_pred CEEECCcCcccCCC--Ccc--ceeE-----CCccHHHHHHHHhhccC-----------CceEEEecCh
Confidence 57899999999994 998 9888 89999999999997752 2367777765
No 71
>PLN02917 CMP-KDO synthetase
Probab=95.66 E-value=0.21 Score=54.82 Aligned_cols=187 Identities=10% Similarity=0.086 Sum_probs=102.5
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
+++.|++|+|.++||| +|- ++++ .|++++++.++++.... .+..++... .++++.
T Consensus 47 ~i~aIIpA~G~SsR~~---~K~--L~~i-----~GkPLL~~vi~~a~~~~-----------~~~~VVV~~----~~e~I~ 101 (293)
T PLN02917 47 RVVGIIPARFASSRFE---GKP--LVHI-----LGKPMIQRTWERAKLAT-----------TLDHIVVAT----DDERIA 101 (293)
T ss_pred cEEEEEecCCCCCCCC---CCC--eeeE-----CCEEHHHHHHHHHHcCC-----------CCCEEEEEC----ChHHHH
Confidence 7889999999999997 588 9888 79999999999886532 122333332 346677
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (834)
+++.++ |. .+..|. ...+.|-|.+..++. .+ +....++.+.+.|.
T Consensus 102 ~~~~~~---~v-----~vi~~~--------------------~~~~~GT~~~~~a~~------~l-~~~~d~Vlil~gD~ 146 (293)
T PLN02917 102 ECCRGF---GA-----DVIMTS--------------------ESCRNGTERCNEALK------KL-EKKYDIVVNIQGDE 146 (293)
T ss_pred HHHHHc---CC-----EEEeCC--------------------cccCCchHHHHHHHH------hc-cCCCCEEEEecCCc
Confidence 777642 21 111110 112456666655442 22 23457999999999
Q ss_pred CcccccHhHHHHhhhhhhcCCceeEEEe-ee-cCCCCcCceEEEEeecCCCccccceEEEEec-c-cCccCCCCCCCCCC
Q 003283 448 VVAATDLTLLALAGIGLHHGKKLGFASC-KR-SSGATEGINVLIEKKNLDGKWAYGLSCIEYT-E-FDKFGITRGPFSSN 523 (834)
Q Consensus 448 ~La~vDP~~l~flG~~~~~~~~~~~~~v-vR-K~~~~ekvGvL~~~~~~dGk~~~~~~vVEYs-E-l~~~~~~~~~~~dg 523 (834)
++...+ .+-.++-.. ..+.++.+.+. .. +.....+-|.+...++.+|+ .+.++ . +|.+ .+.. +.
T Consensus 147 PlI~~~-tI~~li~~~-~~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~------alyfsr~~Ipe~--kd~~--~~ 214 (293)
T PLN02917 147 PLIEPE-IIDGVVKAL-QAAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQGY------AIYFSRGLIPYN--KSGK--VN 214 (293)
T ss_pred CCCCHH-HHHHHHHHH-HhcCCceEEEEeeecCHHHhcCCCceEEEECCCCe------EEEeecCcCCcC--CCcc--cc
Confidence 998863 222233332 23344444332 11 22111233444211234564 22333 2 2222 1111 11
Q ss_pred CccccCccceeeeEEeHHHHHhhhc
Q 003283 524 GLQADFPANTNILYVDLASAELVGS 548 (834)
Q Consensus 524 ~l~s~f~~Ninnl~fsL~~L~~vl~ 548 (834)
.. ..+-.|+..+.|+.++|. .+.
T Consensus 215 ~~-~i~~~n~Giy~f~~~~L~-~l~ 237 (293)
T PLN02917 215 PQ-FPYLLHLGIQSYDAKFLK-IYP 237 (293)
T ss_pred cc-cceEEEEEEEEeCHHHHH-HHH
Confidence 11 113349999999999999 544
No 72
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=95.63 E-value=0.0093 Score=59.26 Aligned_cols=48 Identities=25% Similarity=0.416 Sum_probs=38.7
Q ss_pred EEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCC
Q 003283 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (834)
Q Consensus 290 avVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~ 358 (834)
+.|+||||.|+|||. +|. ++++ .|+++++..++++... .-+++|-|+.
T Consensus 2 ~~iILAgG~s~Rmg~--~K~--ll~~-----~g~~ll~~~i~~l~~~------------~~~iivv~~~ 49 (181)
T cd02503 2 TGVILAGGKSRRMGG--DKA--LLEL-----GGKPLLEHVLERLKPL------------VDEVVISANR 49 (181)
T ss_pred cEEEECCCccccCCC--Cce--eeEE-----CCEEHHHHHHHHHHhh------------cCEEEEECCC
Confidence 568999999999996 898 9888 7999999999887653 1246677776
No 73
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=95.51 E-value=0.011 Score=60.79 Aligned_cols=38 Identities=29% Similarity=0.408 Sum_probs=34.3
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 003283 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (834)
Q Consensus 291 vVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (834)
.|+||||.|+|||.+.||- ++++ .|+++++..++++..
T Consensus 2 aiIlAaG~s~R~~~~~~K~--l~~l-----~gkpll~~~l~~l~~ 39 (217)
T TIGR00453 2 AVIPAAGRGTRFGSGVPKQ--YLEL-----GGRPLLEHTLDAFLA 39 (217)
T ss_pred EEEEcCcccccCCCCCCcc--EeEE-----CCeEHHHHHHHHHhc
Confidence 5899999999999888999 9988 799999999998865
No 74
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=95.45 E-value=0.012 Score=60.21 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=35.9
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHH
Q 003283 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAR 336 (834)
Q Consensus 289 vavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~l 336 (834)
++.|+||||.|+|||...||- ++|+ .|+++++..++++...
T Consensus 1 ~~~vILAaG~s~R~~~~~~K~--l~~i-----~Gkpll~~~i~~l~~~ 41 (218)
T cd02516 1 VAAIILAAGSGSRMGADIPKQ--FLEL-----GGKPVLEHTLEAFLAH 41 (218)
T ss_pred CEEEEECCcccccCCCCCCcc--eeEE-----CCeEHHHHHHHHHhcC
Confidence 357899999999999778999 9998 7999999999988653
No 75
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=95.38 E-value=0.015 Score=59.82 Aligned_cols=39 Identities=31% Similarity=0.430 Sum_probs=34.4
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (834)
+++.|+||||.|+|||. +|. ++++ .|+|+++..++.+..
T Consensus 7 ~~~~vILAgG~s~Rmg~--~K~--ll~~-----~g~~ll~~~i~~l~~ 45 (200)
T PRK02726 7 NLVALILAGGKSSRMGQ--DKA--LLPW-----QGVPLLQRVARIAAA 45 (200)
T ss_pred CceEEEEcCCCcccCCC--Cce--eeEE-----CCEeHHHHHHHHHHh
Confidence 67889999999999995 798 9888 799999999988854
No 76
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=95.35 E-value=0.015 Score=60.34 Aligned_cols=41 Identities=27% Similarity=0.442 Sum_probs=37.0
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (834)
+++.|+||||.|+|||...||- ++++ .|++++++.+++++.
T Consensus 3 ~~~~iILAaG~s~R~g~~~~K~--l~~~-----~g~pli~~~l~~l~~ 43 (227)
T PRK00155 3 MVYAIIPAAGKGSRMGADRPKQ--YLPL-----GGKPILEHTLEAFLA 43 (227)
T ss_pred ceEEEEEcCccccccCCCCCce--eeEE-----CCEEHHHHHHHHHHc
Confidence 5778999999999999888999 9888 799999999998865
No 77
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=95.35 E-value=0.014 Score=58.76 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=31.7
Q ss_pred EEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 003283 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (834)
Q Consensus 290 avVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (834)
+.|+||||.|+|||. +|. ++++ .|+++++..++.+++
T Consensus 2 ~~vILAgG~s~Rmg~--~K~--ll~~-----~g~~ll~~~i~~~~~ 38 (190)
T TIGR03202 2 VAIYLAAGQSRRMGE--NKL--ALPL-----GETTLGSASLKTALS 38 (190)
T ss_pred eEEEEcCCccccCCC--Cce--ecee-----CCccHHHHHHHHHHh
Confidence 468999999999995 698 8887 799999999887654
No 78
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=95.33 E-value=0.016 Score=58.63 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=34.2
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQ 334 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~ 334 (834)
++..|+||||.|+||| ..+|. ++++ .|+++++..++.+.
T Consensus 3 ~~~~vILA~G~s~Rm~-~~~K~--ll~~-----~g~~ll~~~i~~l~ 41 (193)
T PRK00317 3 PITGVILAGGRSRRMG-GVDKG--LQEL-----NGKPLIQHVIERLA 41 (193)
T ss_pred CceEEEEcCCCcccCC-CCCCc--eeEE-----CCEEHHHHHHHHHh
Confidence 5788999999999996 36898 9888 79999999998876
No 79
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.33 E-value=0.027 Score=63.51 Aligned_cols=40 Identities=20% Similarity=0.235 Sum_probs=34.7
Q ss_pred CcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 003283 287 PELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (834)
Q Consensus 287 ~kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (834)
.+++.|+||||+|+||| .+|. ++++ .|+|+++..++.+..
T Consensus 173 ~~i~~iILAGG~SsRmG--~~K~--ll~~-----~Gk~ll~~~l~~l~~ 212 (369)
T PRK14490 173 VPLSGLVLAGGRSSRMG--SDKA--LLSY-----HESNQLVHTAALLRP 212 (369)
T ss_pred CCceEEEEcCCccccCC--CCcE--EEEE-----CCccHHHHHHHHHHh
Confidence 36789999999999999 4898 9887 799999999888854
No 80
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=95.20 E-value=0.031 Score=58.99 Aligned_cols=60 Identities=18% Similarity=0.323 Sum_probs=48.3
Q ss_pred EEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 291 vVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
+|+||||.||||+- ..||. ++|+ .|++++++.++.+... | .-.++|+|.. ..+...
T Consensus 3 avIlAaG~gtRl~plt~~~pK~--llpi-----~g~pli~~~l~~l~~~--------g---i~~v~iv~~~---~~~~i~ 61 (260)
T TIGR01099 3 AVIPAAGLGTRFLPATKAIPKE--MLPI-----VDKPLIQYVVEEAVEA--------G---IEDILIVTGR---GKRAIE 61 (260)
T ss_pred EEEEcccCcccCCCcccCCCce--eEEE-----CCEEHHHHHHHHHHhC--------C---CCEEEEEeCC---cHHHHH
Confidence 58999999999974 78999 9998 6889999998877542 3 2257888887 677788
Q ss_pred HHHH
Q 003283 368 SLCE 371 (834)
Q Consensus 368 ~fle 371 (834)
++|.
T Consensus 62 ~~~~ 65 (260)
T TIGR01099 62 DHFD 65 (260)
T ss_pred HHhc
Confidence 8886
No 81
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=94.95 E-value=0.56 Score=51.25 Aligned_cols=158 Identities=19% Similarity=0.153 Sum_probs=96.2
Q ss_pred EEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHH
Q 003283 292 IYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (834)
Q Consensus 292 VlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~~ 368 (834)
|+||||.||||- +..||- ++|| -+|..+++-++++... | .--++|.++. .+-...++
T Consensus 4 iILAgG~GTRL~PlT~~~~Kq--LlpV-----~~KPmi~y~l~~L~~a--------G---I~dI~II~~~--~~~~~~~~ 63 (286)
T COG1209 4 VILAGGSGTRLRPLTRVVPKQ--LLPV-----YDKPMIYYPLETLMLA--------G---IRDILIVVGP--EDKPTFKE 63 (286)
T ss_pred EEecCcCccccccccccCCcc--ccee-----cCcchhHhHHHHHHHc--------C---CceEEEEecC--Cchhhhhh
Confidence 689999999986 578898 9998 6899999999988654 4 2345666666 46666666
Q ss_pred HHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCC
Q 003283 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (834)
Q Consensus 369 fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~ 448 (834)
++-+-..||+ ++++-.|+ .|.|=++-+. +-+++. |-+-..++--||+
T Consensus 64 llGdgs~~gv---~itY~~Q~----------------------~p~GlA~Av~------~a~~fv--~~~~f~l~LGDNi 110 (286)
T COG1209 64 LLGDGSDFGV---DITYAVQP----------------------EPDGLAHAVL------IAEDFV--GDDDFVLYLGDNI 110 (286)
T ss_pred hhcCccccCc---ceEEEecC----------------------CCCcHHHHHH------HHHhhc--CCCceEEEecCce
Confidence 6667688887 45544443 4555555443 223332 4456788999999
Q ss_pred ccc-ccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCcc
Q 003283 449 VAA-TDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKF 513 (834)
Q Consensus 449 La~-vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~ 513 (834)
+.. +.+. +--+...+.+ .....++....+.-||+-. ..||+ .+.++|=-+.|+-
T Consensus 111 ~~~~l~~~----~~~~~~~~~g--a~i~~~~V~dP~rfGV~e~--d~~~~---v~~l~EKP~~P~S 165 (286)
T COG1209 111 FQDGLSEL----LEHFAEEGSG--ATILLYEVDDPSRYGVVEF--DEDGK---VIGLEEKPKEPKS 165 (286)
T ss_pred eccChHHH----HHHHhccCCC--cEEEEEEcCCcccceEEEE--cCCCc---EEEeEECCCCCCC
Confidence 888 2332 2333332323 2322233333455677754 23565 2556665444443
No 82
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=94.89 E-value=0.028 Score=63.39 Aligned_cols=41 Identities=17% Similarity=0.400 Sum_probs=35.7
Q ss_pred cCcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHH
Q 003283 286 LPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQ 334 (834)
Q Consensus 286 L~kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~ 334 (834)
+.+++.|+||||+|+||| ..||. ++++ .|+|+++..++.+.
T Consensus 3 ~~~i~~VILAgG~s~Rmg-g~~K~--ll~i-----~Gkpll~~~i~~l~ 43 (366)
T PRK14489 3 ISQIAGVILAGGLSRRMN-GRDKA--LILL-----GGKPLIERVVDRLR 43 (366)
T ss_pred CCCceEEEEcCCcccCCC-CCCCc--eeEE-----CCeeHHHHHHHHHH
Confidence 347889999999999996 37898 9988 79999999999885
No 83
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=94.63 E-value=0.093 Score=59.12 Aligned_cols=178 Identities=19% Similarity=0.173 Sum_probs=105.5
Q ss_pred EEEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHH
Q 003283 290 GEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (834)
Q Consensus 290 avVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T 366 (834)
-.|+||||.||||- .+.||- |+|| -||.+++++++.+.+ +| ---++|.+.. ..+.+
T Consensus 3 kavILagG~GtRLrPlT~~~PKP--llpI-----~gkPii~~~l~~L~~--------~G---v~eivi~~~y---~~~~i 61 (358)
T COG1208 3 KAVILAGGYGTRLRPLTDDRPKP--LLPI-----AGKPLIEYVLEALAA--------AG---VEEIVLVVGY---LGEQI 61 (358)
T ss_pred eEEEEeCCccccccccccCCCcc--ccee-----CCccHHHHHHHHHHH--------CC---CcEEEEEecc---chHHH
Confidence 46789999999997 479999 9998 699999999988855 34 3345666665 78899
Q ss_pred HHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeC
Q 003283 367 TSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQV 445 (834)
Q Consensus 367 ~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~v~~v 445 (834)
.++|.+...+|+ +|.+..|.. |-|-|+ +..++.. + +.+-.+|.+-
T Consensus 62 ~~~~~d~~~~~~---~I~y~~e~~----------------------~lGTag~l~~a~~~------l---~~~~f~v~~G 107 (358)
T COG1208 62 EEYFGDGEGLGV---RITYVVEKE----------------------PLGTAGALKNALDL------L---GGDDFLVLNG 107 (358)
T ss_pred HHHHhcccccCC---ceEEEecCC----------------------cCccHHHHHHHHHh------c---CCCcEEEEEC
Confidence 999998766665 444333333 334333 3333321 1 1166788888
Q ss_pred CCCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCc
Q 003283 446 SNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGL 525 (834)
Q Consensus 446 DN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l 525 (834)
|++--. | +-.++.+...++....+. .++...+ ..-|++.. .++. -.++++.|-|... ....
T Consensus 108 Dv~~~~-d--l~~l~~~~~~~~~~~~~~-~~~~~~~-~~~Gvv~~---~~~~----~~v~~f~ekp~~~-----~~~~-- 168 (358)
T COG1208 108 DVLTDL-D--LSELLEFHKKKGALATIA-LTRVLDP-SEFGVVET---DDGD----GRVVEFREKPGPE-----EPPS-- 168 (358)
T ss_pred Ceeecc-C--HHHHHHHHHhccCccEEE-EEecCCC-CcCceEEe---cCCC----ceEEEEEecCCCC-----CCCC--
Confidence 876544 2 223355655553333333 3555544 34455543 2121 2466666655320 0000
Q ss_pred cccCccceeeeEEeHHHHH
Q 003283 526 QADFPANTNILYVDLASAE 544 (834)
Q Consensus 526 ~s~f~~Ninnl~fsL~~L~ 544 (834)
.-.|+..++|+-+.++
T Consensus 169 ---~~in~Giyi~~~~v~~ 184 (358)
T COG1208 169 ---NLINAGIYIFDPEVFD 184 (358)
T ss_pred ---ceEEeEEEEECHHHhh
Confidence 2247788888776665
No 84
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=94.41 E-value=0.06 Score=57.13 Aligned_cols=61 Identities=20% Similarity=0.352 Sum_probs=48.2
Q ss_pred EEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 291 vVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
+|+||||.||||+- ..||. ++|+ .|++++++.++.+.+. | .-.++|.|.. ..+.+.
T Consensus 3 aiIlAaG~gtRl~plt~~~pK~--llpv-----~gkpli~~~l~~l~~~--------g---i~~i~iv~~~---~~~~i~ 61 (267)
T cd02541 3 AVIPAAGLGTRFLPATKAIPKE--MLPI-----VDKPVIQYIVEEAVAA--------G---IEDIIIVTGR---GKRAIE 61 (267)
T ss_pred EEEEcCCCCccCCCcccCCCce--eeEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEeCC---chHHHH
Confidence 58899999999983 68999 9998 6899999999888652 3 2256788886 667788
Q ss_pred HHHHH
Q 003283 368 SLCER 372 (834)
Q Consensus 368 ~fle~ 372 (834)
++|..
T Consensus 62 ~~~~~ 66 (267)
T cd02541 62 DHFDR 66 (267)
T ss_pred HHhCC
Confidence 88854
No 85
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=94.36 E-value=0.036 Score=62.32 Aligned_cols=39 Identities=23% Similarity=0.257 Sum_probs=33.7
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (834)
.+..|+||||+|+||| .+|. ++++ .|+|+++..++++..
T Consensus 160 ~i~~IILAGGkSsRMG--~dKa--LL~~-----~GkpLl~~~ie~l~~ 198 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG--KDKA--LLNY-----QGQPHAQYLYDLLAK 198 (346)
T ss_pred CceEEEEeccccccCC--CCcc--ccee-----CCccHHHHHHHHHHh
Confidence 5678999999999999 5898 8887 799999998877654
No 86
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=94.33 E-value=0.071 Score=56.85 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=49.9
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
++..|+||+|.|||||.+.||- -+++ .|+++|+..++-++... .-=.++|.++. +-+....
T Consensus 4 ~~~~vilAaG~G~R~~~~~pKq--~l~l-----~g~pll~~tl~~f~~~~----------~i~~Ivvv~~~--~~~~~~~ 64 (230)
T COG1211 4 MVSAVILAAGFGSRMGNPVPKQ--YLEL-----GGRPLLEHTLEAFLESP----------AIDEIVVVVSP--EDDPYFE 64 (230)
T ss_pred eEEEEEEcCccccccCCCCCce--EEEE-----CCEEehHHHHHHHHhCc----------CCCeEEEEECh--hhhHHHH
Confidence 5789999999999999999998 8887 89999999888877653 12256666666 4555555
Q ss_pred HHHH
Q 003283 368 SLCE 371 (834)
Q Consensus 368 ~fle 371 (834)
++.+
T Consensus 65 ~~~~ 68 (230)
T COG1211 65 KLPK 68 (230)
T ss_pred Hhhh
Confidence 5554
No 87
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=94.02 E-value=0.047 Score=62.08 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=37.8
Q ss_pred CcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHH
Q 003283 287 PELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAR 336 (834)
Q Consensus 287 ~kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~l 336 (834)
.+++.|+||||.|+|||...||- ++++ .|+++++..++.+.+.
T Consensus 4 m~v~aIILAAG~GsRmg~~~pKq--ll~l-----~GkPll~~tl~~l~~~ 46 (378)
T PRK09382 4 SDISLVIVAAGRSTRFSAEVKKQ--WLRI-----GGKPLWLHVLENLSSA 46 (378)
T ss_pred CcceEEEECCCCCccCCCCCCee--EEEE-----CCeeHHHHHHHHHhcC
Confidence 36788999999999999889999 9998 7999999988887653
No 88
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=93.61 E-value=0.046 Score=56.42 Aligned_cols=38 Identities=21% Similarity=0.373 Sum_probs=32.3
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 003283 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (834)
Q Consensus 291 vVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (834)
+|+||||.||||+ ...||. ++|+ .|+++++.+++.+..
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~--ll~i-----~g~pli~~~l~~l~~ 41 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKP--LIEV-----DGKPMIEWVIESLAK 41 (231)
T ss_pred CEEECCcCCccccccCCCCCce--eeEE-----CCEEHHHHHHHhhhc
Confidence 4899999999995 378999 9998 789999998887754
No 89
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=93.35 E-value=0.28 Score=51.99 Aligned_cols=35 Identities=14% Similarity=0.195 Sum_probs=30.7
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 003283 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (834)
Q Consensus 291 vVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (834)
+|++|+|.||||+ +|- ++++ .||++++..++++++
T Consensus 2 ~iIpA~g~s~R~~---~K~--L~~l-----~GkPli~~~le~~~~ 36 (238)
T TIGR00466 2 VIIPARLASSRLP---GKP--LEDI-----FGKPMIVHVAENANE 36 (238)
T ss_pred EEEecCCCCCCCC---CCe--eccc-----CCcCHHHHHHHHHHh
Confidence 5889999999995 788 8887 799999999998764
No 90
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=93.27 E-value=0.15 Score=52.83 Aligned_cols=64 Identities=16% Similarity=0.238 Sum_probs=48.4
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 291 vVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
.|+||||.|+||+ ...||. ++|+ .|++++++.++.+... | .--++|++.. ..+...
T Consensus 3 avIlagg~g~rl~plt~~~pK~--llpv-----~g~pli~~~l~~l~~~--------g---i~~i~vv~~~---~~~~~~ 61 (216)
T cd02507 3 AVVLADGFGSRFLPLTSDIPKA--LLPV-----ANVPLIDYTLEWLEKA--------G---VEEVFVVCCE---HSQAII 61 (216)
T ss_pred EEEEeCCCccccCccccCCCcc--cceE-----CCEEHHHHHHHHHHHC--------C---CCeEEEEeCC---cHHHHH
Confidence 4669999999997 378999 9998 6899999988877542 3 2247788887 567777
Q ss_pred HHHHHhCC
Q 003283 368 SLCERLRW 375 (834)
Q Consensus 368 ~fle~n~y 375 (834)
+++.+..+
T Consensus 62 ~~~~~~~~ 69 (216)
T cd02507 62 EHLLKSKW 69 (216)
T ss_pred HHHHhccc
Confidence 77776443
No 91
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=92.95 E-value=1.1 Score=51.31 Aligned_cols=199 Identities=16% Similarity=0.211 Sum_probs=117.2
Q ss_pred CcEEEEEecCCccccCCC---CCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCc
Q 003283 287 PELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN 362 (834)
Q Consensus 287 ~kvavVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~T 362 (834)
+++-.++||||+|+||+- ..+|- .+|.+ || -+.|+.+-... ..| .--+.+.|=. ..
T Consensus 4 ~~~laiILaGg~G~rL~~LT~~Rakp--AVpFg-----GkYRiIDF~LSN~v--------NSG---i~~I~VltQy--~~ 63 (393)
T COG0448 4 KNVLAIILAGGRGSRLSPLTKDRAKP--AVPFG-----GKYRIIDFALSNCV--------NSG---IRRIGVLTQY--KS 63 (393)
T ss_pred cceEEEEEcCCCCCccchhhhCcccc--ccccC-----ceeEEEeEEccccc--------ccC---CCeEEEEecc--ch
Confidence 467888999999999984 45565 55553 32 23333222211 112 3346777777 56
Q ss_pred hHHHHHHHHHhCCCCCC--CCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEE
Q 003283 363 HERITSLCERLRWFGRG--QSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGA 440 (834)
Q Consensus 363 h~~T~~fle~n~yFGl~--~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi 440 (834)
| .-.+++..-..|+++ .+.|+++.+.+- .++ -.|.-.+-=.+|. + +..+.+-+-+|+
T Consensus 64 ~-SL~~Hi~~G~~w~l~~~~~~v~ilp~~~~-----~~~---------~~wy~Gtadai~Q----n--l~~i~~~~~eyv 122 (393)
T COG0448 64 H-SLNDHIGRGWPWDLDRKNGGVFILPAQQR-----EGG---------ERWYEGTADAIYQ----N--LLIIRRSDPEYV 122 (393)
T ss_pred h-HHHHHhhCCCccccccccCcEEEeCchhc-----cCC---------CcceeccHHHHHH----h--HHHHHhcCCCEE
Confidence 6 556666665555554 344544432211 011 1122222222332 2 345568899999
Q ss_pred EEEeCCCCcccccHhHHHHhhhhhhcCCceeEEE--eeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCC
Q 003283 441 TVRQVSNVVAATDLTLLALAGIGLHHGKKLGFAS--CKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRG 518 (834)
Q Consensus 441 ~v~~vDN~La~vDP~~l~flG~~~~~~~~~~~~~--vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~ 518 (834)
.+.+.|=+ .++|..- ++-.+...++++.+.+ |+++ .+..-|++-. ..+|+ ++|+.|=|..+.
T Consensus 123 lIlsgDhI-YkmDy~~--ml~~H~~~gadiTv~~~~Vp~~--eas~fGim~~--D~~~~------i~~F~eKp~~~~--- 186 (393)
T COG0448 123 LILSGDHI-YKMDYSD--MLDFHIESGADVTVAVKEVPRE--EASRFGVMNV--DENGR------IIEFVEKPADGP--- 186 (393)
T ss_pred EEecCCEE-EecCHHH--HHHHHHHcCCCEEEEEEECChH--hhhhcCceEE--CCCCC------EEeeeeccCcCC---
Confidence 99999864 4566654 3788999999999887 3443 2334676643 35665 677766666520
Q ss_pred CCCCCCccccCccceeeeEEeHHHHHhhhcc
Q 003283 519 PFSSNGLQADFPANTNILYVDLASAELVGSS 549 (834)
Q Consensus 519 ~~~dg~l~s~f~~Ninnl~fsL~~L~~vl~~ 549 (834)
.+.++ +...+.+|+-+.|.+.|++
T Consensus 187 --~~~~l-----aSMgiYIf~~~~L~~~L~~ 210 (393)
T COG0448 187 --PSNSL-----ASMGIYIFNTDLLKELLEE 210 (393)
T ss_pred --cccce-----eeeeeEEEcHHHHHHHHHH
Confidence 11111 4689999999999999985
No 92
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=92.10 E-value=0.2 Score=55.11 Aligned_cols=62 Identities=21% Similarity=0.367 Sum_probs=49.1
Q ss_pred EEEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHH
Q 003283 290 GEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (834)
Q Consensus 290 avVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T 366 (834)
-.|+||||.||||+- ..||- ++|+ .|+++++..++.+... | .--++|.+.. ..+..
T Consensus 10 ~aiIlaaG~g~Rl~~~t~~~pK~--l~pv-----~g~pii~~~l~~l~~~--------g---i~~i~vv~~~---~~~~i 68 (302)
T PRK13389 10 KAVIPVAGLGTRMLPATKAIPKE--MLPL-----VDKPLIQYVVNECIAA--------G---ITEIVLVTHS---SKNSI 68 (302)
T ss_pred EEEEECCcCCccCCCccCCCCce--eeEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEeCC---CHHHH
Confidence 367889999999964 68999 9998 6899999998887653 3 2346777876 67889
Q ss_pred HHHHHH
Q 003283 367 TSLCER 372 (834)
Q Consensus 367 ~~fle~ 372 (834)
.++|..
T Consensus 69 ~~~~~~ 74 (302)
T PRK13389 69 ENHFDT 74 (302)
T ss_pred HHHHcc
Confidence 999864
No 93
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=90.99 E-value=6.1 Score=44.55 Aligned_cols=187 Identities=19% Similarity=0.222 Sum_probs=114.7
Q ss_pred CcEEEEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCch
Q 003283 287 PELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 363 (834)
Q Consensus 287 ~kvavVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th 363 (834)
..++.|+|-||-||||= ++.||- +.|+ ..+.+++++++.+... | .--+++.|++ +..
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKP--lVpf-----gn~pmI~hqieal~ns--------G---i~~I~la~~y--~s~ 67 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKP--LVPF-----GNKPMILHQIEALINS--------G---ITKIVLATQY--NSE 67 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCc--cccc-----CcchhhHHHHHHHHhC--------C---CcEEEEEEec--CcH
Confidence 36888999999999985 688888 8777 4677888777766542 4 5678999998 333
Q ss_pred HHHHHHHHHhC-CCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEE
Q 003283 364 ERITSLCERLR-WFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATV 442 (834)
Q Consensus 364 ~~T~~fle~n~-yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v 442 (834)
.-.+.+.+.+. .|| ..| +|.|...|.=.+ | --.|..+ .|....++ -.+|
T Consensus 68 sl~~~~~k~y~~~lg---Vei-~~s~eteplgta--G-------------------pl~laR~--~L~~~~~~---~ffV 117 (371)
T KOG1322|consen 68 SLNRHLSKAYGKELG---VEI-LASTETEPLGTA--G-------------------PLALARD--FLWVFEDA---PFFV 117 (371)
T ss_pred HHHHHHHHHhhhccc---eEE-EEEeccCCCccc--c-------------------hHHHHHH--HhhhcCCC---cEEE
Confidence 36667777763 455 233 455555544331 2 1111111 11111111 4566
Q ss_pred EeCCCCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecC-CCccccceEEEEecccCccCCCCCCCC
Q 003283 443 RQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNL-DGKWAYGLSCIEYTEFDKFGITRGPFS 521 (834)
Q Consensus 443 ~~vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~-dGk~~~~~~vVEYsEl~~~~~~~~~~~ 521 (834)
-+.| .++++| +..|+.++.+++++....+ .. ..+.-+-|++... . .| .+..++|=|++..+
T Consensus 118 LnsD-vi~~~p--~~~~vqfH~~~gae~TI~~-t~-vdepSkyGvv~~d--~~~g------rV~~F~EKPkd~vs----- 179 (371)
T KOG1322|consen 118 LNSD-VICRMP--YKEMVQFHRAHGAEITIVV-TK-VDEPSKYGVVVID--EDTG------RVIRFVEKPKDLVS----- 179 (371)
T ss_pred ecCC-eeecCC--HHHHHHHHHhcCCceEEEE-Ee-ccCccccceEEEe--cCCC------ceeEehhCchhhhh-----
Confidence 6665 455553 4467899999999988775 32 2234466777542 3 34 47777777775311
Q ss_pred CCCccccCccceeeeEEeHHHHHhhhc
Q 003283 522 SNGLQADFPANTNILYVDLASAELVGS 548 (834)
Q Consensus 522 dg~l~s~f~~Ninnl~fsL~~L~~vl~ 548 (834)
-.-|.....|+-+.|.+++.
T Consensus 180 -------nkinaGiYi~~~~vL~ri~~ 199 (371)
T KOG1322|consen 180 -------NKINAGIYILNPEVLDRILL 199 (371)
T ss_pred -------ccccceEEEECHHHHhHhhh
Confidence 11267778888888888763
No 94
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=90.13 E-value=0.57 Score=48.76 Aligned_cols=60 Identities=27% Similarity=0.402 Sum_probs=42.2
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCc-hHHHHHH
Q 003283 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN-HERITSL 369 (834)
Q Consensus 291 vVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~T-h~~T~~f 369 (834)
.|+||||.++||| .|. ++++ .|+++++..++.+.... ..-.++|-|+. +- ++...++
T Consensus 2 aiIlA~G~S~R~~---~K~--ll~l-----~Gkpli~~~i~~l~~~~----------~~~~ivVv~~~--~~~~~~i~~~ 59 (233)
T cd02518 2 AIIQARMGSTRLP---GKV--LKPL-----GGKPLLEHLLDRLKRSK----------LIDEIVIATST--NEEDDPLEAL 59 (233)
T ss_pred EEEeeCCCCCCCC---CCc--cccc-----CCccHHHHHHHHHHhCC----------CCCeEEEECCC--CcccHHHHHH
Confidence 4789999999996 488 8777 79999999998886532 11246666665 22 2566666
Q ss_pred HHH
Q 003283 370 CER 372 (834)
Q Consensus 370 le~ 372 (834)
+..
T Consensus 60 ~~~ 62 (233)
T cd02518 60 AKK 62 (233)
T ss_pred HHH
Confidence 653
No 95
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=89.96 E-value=0.5 Score=55.50 Aligned_cols=204 Identities=15% Similarity=0.110 Sum_probs=102.9
Q ss_pred EEEEEecCCccccCC-C---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchH
Q 003283 289 LGEIYPLGGSADRLG-L---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (834)
Q Consensus 289 vavVlLAGGlGTRLG-~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~ 364 (834)
+-.|+||||.||||= + ..||- ++|+. .++|+||..++++..+ + +.=++ |.|+. .-.+
T Consensus 6 ~~~vIlaGG~GtRlwPlS~~~~PKq--~l~l~----~~~sllq~t~~r~~~~--------~--~~~~i-ivt~~--~~~~ 66 (478)
T PRK15460 6 LYPVVMAGGSGSRLWPLSRVLYPKQ--FLCLK----GDLTMLQTTICRLNGV--------E--CESPV-VICNE--QHRF 66 (478)
T ss_pred eEEEEECCCCccccccCCCCCCCcc--eeECC----CCCCHHHHHHHHHHhC--------C--CCCcE-EEeCH--HHHH
Confidence 567899999999996 2 35998 99984 6689999999987654 2 23345 55887 3445
Q ss_pred HHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHc--C-ceEEE
Q 003283 365 RITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDN--G-RKGAT 441 (834)
Q Consensus 365 ~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~--G-ikyi~ 441 (834)
.+++-|.+.+. .+.+ ++++ |..--++|- -.+.|+ .+.++ + =.-+.
T Consensus 67 ~v~~ql~~~~~---~~~~------------------ii~E-P~~rnTApa---ialaa~-------~~~~~~~~~~~~v~ 114 (478)
T PRK15460 67 IVAEQLRQLNK---LTEN------------------IILE-PAGRNTAPA---IALAAL-------AAKRHSPESDPLML 114 (478)
T ss_pred HHHHHHHhcCC---cccc------------------EEec-CCCCChHHH---HHHHHH-------HHHHhcCCCCCeEE
Confidence 55555554332 1122 2222 111122221 011222 11222 2 24677
Q ss_pred EEeCCCCcccccHhHHHHh--hhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCc-cccceEEEEecccCccCCCCC
Q 003283 442 VRQVSNVVAATDLTLLALA--GIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGK-WAYGLSCIEYTEFDKFGITRG 518 (834)
Q Consensus 442 v~~vDN~La~vDP~~l~fl--G~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk-~~~~~~vVEYsEl~~~~~~~~ 518 (834)
|...|......+ .|...+ +........+..-- ++-+.|+.+=|-+-.-...++. ......|....|=|+...++.
T Consensus 115 vlPaDH~I~d~~-~F~~~i~~A~~~A~~~~lvt~G-I~Pt~PeTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~ 192 (478)
T PRK15460 115 VLAADHVIADED-AFRAAVRNAMPYAEAGKLVTFG-IVPDLPETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQA 192 (478)
T ss_pred EeccccccCCHH-HHHHHHHHHHHHHhcCCEEEEe-cCCCCCCCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHH
Confidence 888887765532 121111 12222221111111 3333456677777320000000 000123444455444421211
Q ss_pred CCCCCCccccCccceeeeEEeHHHHHhhhcc
Q 003283 519 PFSSNGLQADFPANTNILYVDLASAELVGSS 549 (834)
Q Consensus 519 ~~~dg~l~s~f~~Ninnl~fsL~~L~~vl~~ 549 (834)
=..+|. |--|..++.|+.+.+.+.+++
T Consensus 193 yl~~G~----y~WNsGiF~~~a~~~l~~~~~ 219 (478)
T PRK15460 193 YVASGE----YYWNSGMFLFRAGRYLEELKK 219 (478)
T ss_pred HHHcCC----EEEecceeheeHHHHHHHHHH
Confidence 112231 445999999999999999876
No 96
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=83.88 E-value=1.5 Score=49.08 Aligned_cols=201 Identities=13% Similarity=0.088 Sum_probs=103.7
Q ss_pred EEEEecCCccccCC----CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHH
Q 003283 290 GEIYPLGGSADRLG----LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 365 (834)
Q Consensus 290 avVlLAGGlGTRLG----~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~ 365 (834)
.-|+||||.||||= -..||- -|.+. +++|+||-.++|+..+. + .-.+++.|+. +-...
T Consensus 3 ~pvIlaGG~GsRLWPLSR~~~PKQ--Fl~L~----~~~Sllq~T~~R~~~l~-------~---~~~~~vVtne--~~~f~ 64 (333)
T COG0836 3 IPVILAGGSGSRLWPLSRKDYPKQ--FLKLF----GDLSLLQQTVKRLAFLG-------D---IEEPLVVTNE--KYRFI 64 (333)
T ss_pred eeEEEeCCCccccCCcCcccCCcc--ceeeC----CCCcHHHHHHHHHhhcC-------C---ccCeEEEeCH--HHHHH
Confidence 45789999999995 367887 77763 78999999999998864 1 3345566666 24444
Q ss_pred HHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeC
Q 003283 366 ITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQV 445 (834)
Q Consensus 366 T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~v 445 (834)
+++=|.+-+. ....+ ++++- -.=-++| .|..+ .+.-..+.|=--+.|...
T Consensus 65 v~eql~e~~~-------------------~~~~~-illEP-~gRnTAp----AIA~a-----a~~~~~~~~d~~~lVlps 114 (333)
T COG0836 65 VKEQLPEIDI-------------------ENAAG-IILEP-EGRNTAP----AIALA-----ALSATAEGGDALVLVLPS 114 (333)
T ss_pred HHHHHhhhhh-------------------ccccc-eEecc-CCCCcHH----HHHHH-----HHHHHHhCCCcEEEEecC
Confidence 4444443111 00011 33321 1111222 11111 122223334334667777
Q ss_pred CCCcccccHhHHHHhhhh---hhcCCceeEEEeeecCCCCcCceEEEEee-cCC-CccccceEEEEecccCccCCCCCCC
Q 003283 446 SNVVAATDLTLLALAGIG---LHHGKKLGFASCKRSSGATEGINVLIEKK-NLD-GKWAYGLSCIEYTEFDKFGITRGPF 520 (834)
Q Consensus 446 DN~La~vDP~~l~flG~~---~~~~~~~~~~~vvRK~~~~ekvGvL~~~~-~~d-Gk~~~~~~vVEYsEl~~~~~~~~~~ 520 (834)
|-.....+ .|...+.-. +.++.-+.|-.++- .|..|-|-+-.-. ..+ |- +.|-++-|=|+...++.-.
T Consensus 115 DH~I~d~~-af~~av~~A~~~A~~g~lVTfGI~Pt--~PeTGYGYIe~G~~~~~~~~----~~V~~FvEKPd~etA~~yv 187 (333)
T COG0836 115 DHVIADEE-AFLNAVKKAEKAAEEGGIVTFGIPPT--RPETGYGYIETGESIAENGV----YKVDRFVEKPDLETAKKYV 187 (333)
T ss_pred cceeccHH-HHHHHHHHHHHHHHcCCEEEEecCCC--CCccCcceeecCcccccCCc----eEeeeeeeCCCHHHHHHHH
Confidence 76655432 221111111 12232233332232 2455666663200 001 22 5666666767664333333
Q ss_pred CCCCccccCccceeeeEEeHHHHHhhhcc
Q 003283 521 SSNGLQADFPANTNILYVDLASAELVGSS 549 (834)
Q Consensus 521 ~dg~l~s~f~~Ninnl~fsL~~L~~vl~~ 549 (834)
..|. |--|-....|+.+.+.+.+++
T Consensus 188 ~sG~----y~WNSGmF~Fra~~~l~e~~~ 212 (333)
T COG0836 188 ESGE----YLWNSGMFLFRASVFLEELKK 212 (333)
T ss_pred HcCc----eEeeccceEEEHHHHHHHHHh
Confidence 3342 556999999999999888875
No 97
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=81.63 E-value=57 Score=34.37 Aligned_cols=183 Identities=13% Similarity=0.159 Sum_probs=93.5
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHHH
Q 003283 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLC 370 (834)
Q Consensus 291 vVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~~fl 370 (834)
.|++|.|.+.||+ .|- +.++ .|++++++.++++++.. +.-.+++ .++ ++++.++.
T Consensus 2 aiIpArG~Skr~~---~Kn--l~~l-----~GkpLi~~ti~~a~~s~----------~~d~IvV-std----~~~i~~~a 56 (222)
T TIGR03584 2 AIIPARGGSKRIP---RKN--IKPF-----CGKPMIAYSIEAALNSG----------LFDKVVV-STD----DEEIAEVA 56 (222)
T ss_pred EEEccCCCCCCCC---Ccc--chhc-----CCcCHHHHHHHHHHhCC----------CCCEEEE-eCC----CHHHHHHH
Confidence 4788999999996 476 6666 89999999999886632 1112333 433 35677777
Q ss_pred HHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHH-cCceEEEEEeCCCCc
Q 003283 371 ERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHD-NGRKGATVRQVSNVV 449 (834)
Q Consensus 371 e~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~-~Gikyi~v~~vDN~L 449 (834)
+++ |. .| |... +..++..--|-.++.... ++.+.. ...+++.+.+.|.++
T Consensus 57 ~~~---g~---~v--------~~~r----------~~~l~~d~~~~~~si~~~-----l~~l~~~~~~d~v~~l~~tsPl 107 (222)
T TIGR03584 57 KSY---GA---SV--------PFLR----------PKELADDFTGTAPVVKHA-----IEELKLQKQYDHACCIYATAPF 107 (222)
T ss_pred HHc---CC---Ee--------EEeC----------hHHHcCCCCCchHHHHHH-----HHHHhhcCCCCEEEEecCCCCc
Confidence 753 32 11 1111 001111111222222222 233322 346889999999999
Q ss_pred ccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCccccC
Q 003283 450 AATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADF 529 (834)
Q Consensus 450 a~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s~f 529 (834)
...+- +-.++......+++..+.++....++... ... ..+|+ +...-...... +-.| +-..|
T Consensus 108 ~~~~~-I~~~i~~~~~~~~ds~~sv~~~~~~~~~~--~~~---~~~g~----~~~~~~~~~~~------~rQd--~~~~y 169 (222)
T TIGR03584 108 LQAKI-LKEAFELLKQPNAHFVFSVTSFAFPIQRA--FKL---KENGG----VEMFFPEHFNT------RSQD--LEEAY 169 (222)
T ss_pred CCHHH-HHHHHHHHHhCCCCEEEEeeccCCChHHh--eEE---CCCCc----EEecCCCcccC------CCCC--Cchhe
Confidence 98621 11223444444566666653221122111 121 14565 33322111110 1111 11125
Q ss_pred ccceeeeEEeHHHHHh
Q 003283 530 PANTNILYVDLASAEL 545 (834)
Q Consensus 530 ~~Ninnl~fsL~~L~~ 545 (834)
.-|-+.++++.+.+.+
T Consensus 170 ~~nga~y~~~~~~~~~ 185 (222)
T TIGR03584 170 HDAGQFYWGKSQAWLE 185 (222)
T ss_pred eeCCeEEEEEHHHHHh
Confidence 4599999999998865
No 98
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=79.48 E-value=1.3 Score=46.29 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=44.5
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 291 vVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
.|+||-|+|||+- ++-||+ ++.| .|+.+.+.++++++.. | .--++|.|.- - .+--
T Consensus 3 AIIlAAG~gsR~~plT~~tpK~--LlkV-----~g~plIErqI~~L~e~--------g---I~dI~IVvGY---l-kE~F 60 (231)
T COG4750 3 AIILAAGLGSRFVPLTQSTPKS--LLKV-----NGEPLIERQIEQLREA--------G---IDDITIVVGY---L-KEQF 60 (231)
T ss_pred eEEEecccccccccccccCChH--HHHh-----cCcccHHHHHHHHHHC--------C---CceEEEEeee---h-HHHH
Confidence 5789999999976 689999 9888 8999999888888653 2 3346677775 2 3344
Q ss_pred HHHHH
Q 003283 368 SLCER 372 (834)
Q Consensus 368 ~fle~ 372 (834)
+||++
T Consensus 61 eYLkd 65 (231)
T COG4750 61 EYLKD 65 (231)
T ss_pred HHHHH
Confidence 56654
No 99
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=76.74 E-value=2.9 Score=43.94 Aligned_cols=39 Identities=15% Similarity=0.304 Sum_probs=34.8
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (834)
+++.|+||-|.|+||| .+|- ++|+ .|+++....+++.+.
T Consensus 5 ~v~~VvLAAGrssRmG--~~Kl--Lap~-----~g~plv~~~~~~a~~ 43 (199)
T COG2068 5 TVAAVVLAAGRSSRMG--QPKL--LAPL-----DGKPLVRASAETALS 43 (199)
T ss_pred ceEEEEEcccccccCC--Ccce--eccc-----CCCcHHHHHHHHHHh
Confidence 7899999999999999 8898 8776 899999999988765
No 100
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=74.00 E-value=4.5 Score=44.52 Aligned_cols=60 Identities=20% Similarity=0.342 Sum_probs=41.1
Q ss_pred EEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 291 vVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
.|+.|.|+|||+=- .-||- |||| -+|...|+.++...+. | .--++|.|+. +...+.
T Consensus 7 AViPaAGlGTRfLPATKaiPKE--MLPI-----vdKP~IqYiVeEa~~a--------G---Ie~i~iVTgr---~K~~Ie 65 (291)
T COG1210 7 AVIPAAGLGTRFLPATKAIPKE--MLPI-----VDKPLIQYIVEEAVAA--------G---IEEILIVTGR---GKRAIE 65 (291)
T ss_pred EEEEccCcccccccccccCchh--hccc-----cCchhHHHHHHHHHHc--------C---CCEEEEEecC---CcchHH
Confidence 46789999999932 34454 6665 6799999999977553 4 4567888887 444554
Q ss_pred HHHH
Q 003283 368 SLCE 371 (834)
Q Consensus 368 ~fle 371 (834)
++|.
T Consensus 66 DhFD 69 (291)
T COG1210 66 DHFD 69 (291)
T ss_pred HhCc
Confidence 4443
No 101
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=59.63 E-value=52 Score=38.79 Aligned_cols=66 Identities=11% Similarity=0.126 Sum_probs=39.3
Q ss_pred cccceEEEeeeEEeeCc---eeeecCCCCCCcccceeeeeEEEEEecc---eeeEecceeEecceEEEecCC----eeEE
Q 003283 752 YRCGRCKLNNVKVLNKG---IDWDCGDNTYWKHDVQWFEALKVILHGN---AEFEASDVTLQGNHVFEVPDG----HKLK 821 (834)
Q Consensus 752 ~~~g~~~l~~~~V~N~G---~~~~~~~~~~~~~e~~r~~~~~i~~~~~---~ef~a~~v~~~g~~~~~vp~g----~~~~ 821 (834)
..|-+++|+|.+++|-| +..+.++ .+|++-.|+-... --|++.+++++||++....|+ +|+.
T Consensus 141 ~~a~~v~Iedn~L~gsg~FGI~L~~~~--------~~I~~N~I~g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~ 212 (455)
T TIGR03808 141 QGGRDVRITDCEITGSGGNGIWLETVS--------GDISGNTITQIAVTAIVSFDALGLIVARNTIIGANDNGIEILRSA 212 (455)
T ss_pred ccCCceEEEeeEEEcCCcceEEEEcCc--------ceEecceEeccccceEEEeccCCCEEECCEEEccCCCCeEEEEee
Confidence 55667777777777663 2222222 1222222222211 247888999999999999997 6664
Q ss_pred eecC
Q 003283 822 ITSG 825 (834)
Q Consensus 822 ~~~~ 825 (834)
+.+|
T Consensus 213 ~~~d 216 (455)
T TIGR03808 213 IGDD 216 (455)
T ss_pred ecCC
Confidence 4444
No 102
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=43.86 E-value=22 Score=42.17 Aligned_cols=60 Identities=27% Similarity=0.328 Sum_probs=46.0
Q ss_pred ceEEEecCC---eeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCCccc
Q 003283 382 SFQLFEQPL---VPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAA 451 (834)
Q Consensus 382 qV~~F~Q~~---vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~La~ 451 (834)
+|.|=.|.. --+++ .|+.+.-++.+++..-|.|||.+. +-|.+..-.-|||=|+||+...
T Consensus 235 ~IsfS~Qk~sTDTIAv~-~dN~pFR~~dG~LlFRPgGHGALi---------eNLN~ldaDiIFIKNIDNVvpd 297 (513)
T PF14134_consen 235 EISFSEQKPSTDTIAVD-PDNTPFRNEDGSLLFRPGGHGALI---------ENLNDLDADIIFIKNIDNVVPD 297 (513)
T ss_pred EEEecccCCCCCeeEEC-CCCCccCCCCCCEEeCCCcchHHH---------hhhccccCCEEEEeCccccCCc
Confidence 455555543 45666 678888899999999999999864 4556667788999999999863
No 103
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=40.56 E-value=40 Score=36.37 Aligned_cols=67 Identities=15% Similarity=0.284 Sum_probs=48.9
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
+.++|+=| |||++.=+|-.++|+ -+.++++++++++++.. ..=-++|-||+. .+++...
T Consensus 3 ~I~~IiQA-----RmgStRLpgKvLlpL-----~~~pmI~~~lervrks~----------~~d~ivvATS~~-~~d~~l~ 61 (241)
T COG1861 3 MILVIIQA-----RMGSTRLPGKVLLPL-----GGEPMIEYQLERVRKSK----------DLDKIVVATSDK-EEDDALE 61 (241)
T ss_pred cEEEEeee-----cccCccCCcchhhhc-----CCCchHHHHHHHHhccc----------cccceEEEecCC-cchhHHH
Confidence 34555543 788776555337776 68889999999998764 223589999994 7888889
Q ss_pred HHHHHhCC
Q 003283 368 SLCERLRW 375 (834)
Q Consensus 368 ~fle~n~y 375 (834)
.++.++.+
T Consensus 62 ~~~~~~G~ 69 (241)
T COG1861 62 EVCRSHGF 69 (241)
T ss_pred HHHHHcCe
Confidence 99998775
No 104
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=29.53 E-value=3.9e+02 Score=30.44 Aligned_cols=185 Identities=12% Similarity=0.074 Sum_probs=104.9
Q ss_pred EEEEEecCC-ccccC---CCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchH
Q 003283 289 LGEIYPLGG-SADRL---GLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (834)
Q Consensus 289 vavVlLAGG-lGTRL---G~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~ 364 (834)
.|||++-|= -|||. -++-||- ++|+ -|....+..+....++..|+ =+++--| .-.+
T Consensus 4 ~AVIlVGGP~kGTRFRPLSf~vPKP--Lfpi-----aG~pmI~Hhi~ac~qi~~l~-----------eI~LvGF--y~e~ 63 (407)
T KOG1460|consen 4 KAVILVGGPQKGTRFRPLSFNVPKP--LFPI-----AGVPMIHHHISACKQISGLA-----------EILLVGF--YEER 63 (407)
T ss_pred EEEEEecCCCCCccccccccCCCCC--cccc-----CCcchhhhhHHHHhcccchh-----------heeEEec--ccch
Confidence 456655443 39994 5899999 9998 57778888777776665332 1233344 2455
Q ss_pred HHHHHHHHhC-CCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEE
Q 003283 365 RITSLCERLR-WFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVR 443 (834)
Q Consensus 365 ~T~~fle~n~-yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~ 443 (834)
.-..|+.+-. .|- +|. ++--+.+|.|-||-...+. |..++---..+||.
T Consensus 64 ~f~~fis~~~~e~~-------------~pv------------rYL~E~~plGtaGgLyhFr-----dqIl~g~ps~vFvl 113 (407)
T KOG1460|consen 64 VFTDFISAIQQEFK-------------VPV------------RYLREDNPLGTAGGLYHFR-----DQILAGSPSAVFVL 113 (407)
T ss_pred HHHHHHHHHHhhcc-------------cch------------hhhccCCCCCcccceeehh-----hHHhcCCCceEEEE
Confidence 5666766532 221 121 1223567888765433332 44556667889999
Q ss_pred eCCCCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCC
Q 003283 444 QVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSN 523 (834)
Q Consensus 444 ~vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg 523 (834)
|.|=...+.=+ .++..+...+.-+.+.+..-.+..+..-|.|+.. -..| .++-|.|=|.--+. |
T Consensus 114 naDVCcsfPl~---~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~d-P~t~------evlHYveKPsTfvS-----d- 177 (407)
T KOG1460|consen 114 NADVCCSFPLQ---DMLEAHRRYGGIGTLLVTKVSREQASNFGCLVED-PSTG------EVLHYVEKPSTFVS-----D- 177 (407)
T ss_pred ecceecCCcHH---HHHHHHhhcCCceEEEEEEecHhHhhccCeeeec-CCcC------ceEEeecCcchhhh-----c-
Confidence 99987777522 2355666666666666521111123346677651 1233 36678776554210 0
Q ss_pred CccccCccceeeeEEeHHHHHh
Q 003283 524 GLQADFPANTNILYVDLASAEL 545 (834)
Q Consensus 524 ~l~s~f~~Ninnl~fsL~~L~~ 545 (834)
..|.....|+-+.++.
T Consensus 178 ------~InCGvYlF~~eif~~ 193 (407)
T KOG1460|consen 178 ------IINCGVYLFTPEIFNA 193 (407)
T ss_pred ------ccceeEEEecHHHHHH
Confidence 0255667777665544
No 105
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=24.30 E-value=4.5e+02 Score=29.41 Aligned_cols=21 Identities=14% Similarity=0.275 Sum_probs=11.0
Q ss_pred ecceeEecceEEEecCCeeEE
Q 003283 801 ASDVTLQGNHVFEVPDGHKLK 821 (834)
Q Consensus 801 a~~v~~~g~~~~~vp~g~~~~ 821 (834)
++|+++.+|.+..--.|..+.
T Consensus 138 s~~~~v~nN~~~~n~~GI~i~ 158 (314)
T TIGR03805 138 SQNIVVRNNVAEENVAGIEIE 158 (314)
T ss_pred CCCeEEECCEEccCcceEEEE
Confidence 455566666555444444444
No 106
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=23.30 E-value=75 Score=32.41 Aligned_cols=83 Identities=18% Similarity=0.227 Sum_probs=45.2
Q ss_pred cCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHh--------------HhhcCCcccceEEEecCCCCCchHHH
Q 003283 301 RLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLY--------------FKLYGKQCITPVAIMTSSAKNNHERI 366 (834)
Q Consensus 301 RLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La--------------~k~~g~~~~IPl~IMTS~~~~Th~~T 366 (834)
|+|+++-++=-+.++ .||+++++.++++++.+..- .+.+| +. ++|++. .-...+
T Consensus 7 R~gS~rlp~Knl~~l-----~gkpLi~~~i~~a~~s~~~d~IvVaTd~~~i~~~~~~~g----~~-v~~~~~--~~~~~~ 74 (217)
T PF02348_consen 7 RGGSKRLPGKNLKPL-----GGKPLIEYVIERAKQSKLIDEIVVATDDEEIDDIAEEYG----AK-VIFRRG--SLADDT 74 (217)
T ss_dssp -SSSSSSTTGGGSEE-----TTEEHHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHTT----SE-EEE--T--TSSSHH
T ss_pred CCCCCCCCcchhhHh-----CCccHHHHHHHHHHhCCCCCeEEEeCCCHHHHHHHHHcC----Ce-eEEcCh--hhcCCc
Confidence 777766654224454 89999999999998653110 12344 22 256655 233444
Q ss_pred HHHHHHhCCCCCCCCceEEEecCCeeeEe
Q 003283 367 TSLCERLRWFGRGQSSFQLFEQPLVPAVD 395 (834)
Q Consensus 367 ~~fle~n~yFGl~~~qV~~F~Q~~vP~l~ 395 (834)
..+.+--.++..+...+.+..|+..|.++
T Consensus 75 ~r~~~~~~~~~~~~~~~vv~~~~d~Pll~ 103 (217)
T PF02348_consen 75 DRFIEAIKHFLADDEDIVVRLQGDSPLLD 103 (217)
T ss_dssp HHHHHHHHHHTCSTTSEEEEESTTETT--
T ss_pred ccHHHHHHHhhhhHHhhccccCCeeeECC
Confidence 44444333343333447788888888887
No 107
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=23.17 E-value=60 Score=39.29 Aligned_cols=42 Identities=29% Similarity=0.283 Sum_probs=33.8
Q ss_pred ccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCC
Q 003283 300 DRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (834)
Q Consensus 300 TRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~ 358 (834)
||||-.-||| .|-++ ||=+|||+|- ....| +..+|++.|.-.
T Consensus 330 trLGGKLPKG--VLLvG-PPGTGKTlLA-------------RAvAG-EA~VPFF~~sGS 371 (752)
T KOG0734|consen 330 TRLGGKLPKG--VLLVG-PPGTGKTLLA-------------RAVAG-EAGVPFFYASGS 371 (752)
T ss_pred hhccCcCCCc--eEEeC-CCCCchhHHH-------------HHhhc-ccCCCeEecccc
Confidence 8999999999 99998 7789999983 12335 368999999876
No 108
>PLN03014 carbonic anhydrase
Probab=22.10 E-value=1.2e+02 Score=34.85 Aligned_cols=14 Identities=36% Similarity=0.515 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHH
Q 003283 80 FHQEISRLKKLRSR 93 (834)
Q Consensus 80 ~~~~~~~l~~~~~~ 93 (834)
++..|++|+.|++.
T Consensus 83 ~~~~~~~~~~~~~~ 96 (347)
T PLN03014 83 YDEAIEALKKLLIE 96 (347)
T ss_pred HHHHHHHHHhhccc
Confidence 66777778777643
No 109
>PF07538 ChW: Clostridial hydrophobic W; InterPro: IPR006637 This hydrophobic repeat is found in a number of Chlostridium proteins. It contains a conserved tryptophan residue.
Probab=21.92 E-value=79 Score=24.40 Aligned_cols=31 Identities=29% Similarity=0.173 Sum_probs=21.9
Q ss_pred EeeCceeeecCCCC-C--CcccceeeeeEEEEEec
Q 003283 764 VLNKGIDWDCGDNT-Y--WKHDVQWFEALKVILHG 795 (834)
Q Consensus 764 V~N~G~~~~~~~~~-~--~~~e~~r~~~~~i~~~~ 795 (834)
|+|.||.- ...+. . -.-+-.|+|+++|.+.+
T Consensus 2 vq~~GW~~-~~~~G~~aGt~G~~~rlEai~i~L~~ 35 (36)
T PF07538_consen 2 VQNIGWQD-WVSNGQTAGTTGQGLRLEAIKIKLTG 35 (36)
T ss_pred cccccCcc-hhhCceecccCCCCcEEEEEEEEEeC
Confidence 67999983 22221 1 45588999999999875
Done!