Query 003283
Match_columns 834
No_of_seqs 280 out of 676
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 19:53:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003283.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003283hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogz_A UDP-sugar pyrophosphory 100.0 2E-112 7E-117 976.7 41.2 559 134-803 7-612 (630)
2 2yqc_A UDP-N-acetylglucosamine 100.0 3.1E-84 1.1E-88 735.2 32.4 444 135-686 5-470 (486)
3 3r3i_A UTP--glucose-1-phosphat 100.0 7.9E-83 2.7E-87 721.8 28.6 424 195-733 63-502 (528)
4 3gue_A UTP-glucose-1-phosphate 100.0 1.7E-81 5.8E-86 706.4 30.3 380 281-733 69-464 (484)
5 1jv1_A Glcnac1P uridyltransfer 100.0 2.3E-79 8E-84 697.8 36.5 431 134-663 1-440 (505)
6 3oc9_A UDP-N-acetylglucosamine 100.0 2E-77 6.7E-82 663.3 31.8 343 276-665 21-371 (405)
7 2oeg_A UTP-glucose-1-phosphate 100.0 9.9E-79 3.4E-83 690.9 16.5 408 281-776 68-493 (505)
8 2i5k_A UTP--glucose-1-phosphat 100.0 2.9E-71 1E-75 629.0 26.8 462 162-770 11-480 (488)
9 2icy_A Probable UTP-glucose-1- 100.0 6.7E-69 2.3E-73 606.9 24.7 389 261-733 51-446 (469)
10 3st8_A Bifunctional protein GL 98.3 3.8E-06 1.3E-10 95.2 14.2 191 288-549 12-204 (501)
11 3oam_A 3-deoxy-manno-octuloson 97.8 0.00015 5.2E-09 74.9 12.5 189 288-548 2-197 (252)
12 3brk_X Glucose-1-phosphate ade 97.6 0.0021 7.3E-08 70.8 18.3 203 287-548 11-221 (420)
13 4ecm_A Glucose-1-phosphate thy 97.5 0.00097 3.3E-08 69.2 14.6 178 288-544 24-204 (269)
14 3tqd_A 3-deoxy-manno-octuloson 97.5 0.0035 1.2E-07 65.6 17.8 190 288-548 9-206 (256)
15 1yp2_A Glucose-1-phosphate ade 97.3 0.0039 1.3E-07 69.2 16.7 211 288-549 20-246 (451)
16 3k8d_A 3-deoxy-manno-octuloson 97.3 0.0023 7.9E-08 67.2 13.9 190 288-548 18-213 (264)
17 4fce_A Bifunctional protein GL 97.2 0.0031 1.1E-07 69.6 14.9 181 288-549 8-189 (459)
18 3juk_A UDP-glucose pyrophospho 97.2 0.003 1E-07 65.6 13.5 64 289-373 3-69 (281)
19 1fxo_A Glucose-1-phosphate thy 97.2 0.0048 1.6E-07 65.4 15.2 181 289-546 3-186 (293)
20 3f1c_A Putative 2-C-methyl-D-e 97.1 0.0021 7.3E-08 65.9 11.2 113 288-452 3-120 (246)
21 1ezi_A CMP-N-acetylneuraminic 97.1 0.0016 5.6E-08 65.3 10.1 60 288-372 4-63 (228)
22 2qh5_A PMI, ALGA, mannose-6-ph 97.1 0.0044 1.5E-07 65.8 13.8 193 288-549 4-204 (308)
23 1lvw_A Glucose-1-phosphate thy 97.1 0.016 5.6E-07 61.4 17.6 181 289-546 4-187 (295)
24 4fcu_A 3-deoxy-manno-octuloson 97.0 0.011 3.6E-07 61.7 15.2 187 289-548 2-198 (253)
25 1qwj_A Cytidine monophospho-N- 96.9 0.0057 1.9E-07 61.8 12.0 129 288-474 3-131 (229)
26 1h7e_A 3-deoxy-manno-octuloson 96.9 0.0032 1.1E-07 63.6 10.1 179 288-547 2-187 (245)
27 1vic_A 3-deoxy-manno-octuloson 96.9 0.014 5E-07 59.9 14.5 126 288-474 2-127 (262)
28 2v0h_A Bifunctional protein GL 96.8 0.0069 2.4E-07 66.8 12.8 180 288-548 5-185 (456)
29 3pnn_A Conserved domain protei 96.8 0.019 6.7E-07 60.8 15.5 212 288-546 5-228 (303)
30 1hm9_A GLMU, UDP-N-acetylgluco 96.8 0.015 5.3E-07 64.4 14.9 181 290-548 13-194 (468)
31 2xwl_A 2-C-methyl-D-erythritol 96.6 0.0017 5.7E-08 64.6 5.0 54 288-358 2-55 (223)
32 2waw_A MOBA relate protein; un 96.5 0.0011 3.9E-08 64.4 3.1 106 288-452 5-111 (199)
33 2wee_A MOBA-related protein; u 96.5 0.0019 6.6E-08 62.7 4.6 106 288-452 5-111 (197)
34 1tzf_A Glucose-1-phosphate cyt 96.5 0.002 7E-08 65.6 4.9 190 289-543 3-199 (259)
35 3q80_A 2-C-methyl-D-erythritol 96.4 0.0023 8E-08 65.8 5.2 64 288-370 7-70 (231)
36 2yc3_A 2-C-methyl-D-erythritol 96.3 0.0018 6.2E-08 64.8 3.1 54 288-358 4-57 (228)
37 1i52_A 4-diphosphocytidyl-2-C- 96.2 0.002 7E-08 65.0 3.2 54 288-358 7-60 (236)
38 1vgw_A 4-diphosphocytidyl-2C-m 96.2 0.0023 7.8E-08 64.1 3.3 64 288-372 6-69 (231)
39 1vpa_A 2-C-methyl-D-erythritol 96.2 0.0025 8.6E-08 64.0 3.5 54 288-358 13-66 (234)
40 3rsb_A Adenosylcobinamide-phos 96.1 0.0026 9E-08 62.2 3.0 62 290-373 2-63 (196)
41 1mc3_A Glucose-1-phosphate thy 96.1 0.0048 1.6E-07 65.6 5.2 179 289-545 4-186 (296)
42 2vsh_A TARI, 2-C-methyl-D-eryt 96.0 0.0034 1.1E-07 62.8 3.7 66 289-373 3-69 (236)
43 3d5n_A Q97W15_sulso; NESG, SSR 96.0 0.0033 1.1E-07 62.3 3.5 48 288-358 2-49 (197)
44 1e5k_A Molybdopterin-guanine d 96.0 0.0037 1.3E-07 62.3 3.6 39 288-334 6-44 (201)
45 2px7_A 2-C-methyl-D-erythritol 95.7 0.0044 1.5E-07 63.1 2.8 37 288-332 25-61 (236)
46 3ngw_A Molybdopterin-guanine d 95.5 0.0047 1.6E-07 62.4 2.5 36 290-334 2-37 (208)
47 2y6p_A 3-deoxy-manno-octuloson 95.5 0.0057 2E-07 61.2 3.0 178 288-548 2-182 (234)
48 1jyk_A LICC protein, CTP:phosp 95.3 0.0076 2.6E-07 62.2 2.9 63 288-371 25-90 (254)
49 4evw_A Nucleoside-diphosphate- 95.0 0.0052 1.8E-07 63.7 0.8 61 291-372 2-65 (255)
50 2e3d_A UTP--glucose-1-phosphat 94.8 0.02 6.8E-07 60.1 4.8 64 288-372 8-74 (302)
51 2e8b_A Probable molybdopterin- 94.8 0.0031 1.1E-07 62.7 -1.5 50 288-358 14-63 (201)
52 2xme_A CTP-inositol-1-phosphat 94.7 0.011 3.6E-07 59.6 2.2 42 286-335 16-57 (232)
53 2ux8_A Glucose-1-phosphate uri 94.6 0.021 7.2E-07 59.9 4.2 64 288-372 14-80 (297)
54 2pa4_A UTP-glucose-1-phosphate 94.3 0.024 8.3E-07 60.5 3.8 62 289-371 13-77 (323)
55 2x65_A Mannose-1-phosphate gua 94.2 0.022 7.4E-07 61.7 3.2 63 290-371 3-70 (336)
56 1w55_A ISPD/ISPF bifunctional 93.9 0.028 9.5E-07 62.0 3.4 41 288-335 3-43 (371)
57 2cu2_A Putative mannose-1-phos 92.9 0.047 1.6E-06 59.0 3.1 41 289-336 3-48 (337)
58 2dpw_A Hypothetical protein TT 92.3 0.07 2.4E-06 53.9 3.3 39 289-335 3-44 (232)
59 2ggo_A 401AA long hypothetical 92.0 0.064 2.2E-06 58.2 2.8 60 290-373 2-64 (401)
60 3d0j_A Uncharacterized protein 21.3 2.9E+02 0.01 26.5 8.1 61 763-823 19-97 (140)
No 1
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*
Probab=100.00 E-value=1.9e-112 Score=976.74 Aligned_cols=559 Identities=19% Similarity=0.185 Sum_probs=474.9
Q ss_pred ccHHHHHHHHHH--cCCccccccCccchhhhhhhhhHHHHHHHHHhhhhccccCCCccccccccchhhHHHHHHHHHHHH
Q 003283 134 LDQLFLIKCVIA--AGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLA 211 (834)
Q Consensus 134 ~~~~~l~~~L~~--~gQ~Hll~~~~~w~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~Ll~qL~ 211 (834)
++...|+++|.+ +||+|||++ |++. |+| ++++|++|++||.
T Consensus 7 ~~~~~L~~~l~~~~~gQ~HLf~~---w~~~---------------------------------l~~-~~~e~~~L~~qL~ 49 (630)
T 3ogz_A 7 SNLQALREELCTPGLDQGHLFEG---WPET---------------------------------VDE-CNERQIALLTDLY 49 (630)
T ss_dssp HHHHHHHHHHTSTTTCCGGGGTT---CCSS---------------------------------GGG-CCHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhccCCchhhhhh---cccc---------------------------------cCC-CHHHHHHHHHHHH
Confidence 467889999997 999999999 5440 341 2348999999999
Q ss_pred HHhccccCcchhHHHHHHHHHHHHccccccccccccccccccccccccc-cCC---CCcccCCChHHHHHHHHHhhhccC
Q 003283 212 EIEQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEI-HVP---SGLDLSQNTEYAAQAALWGIEGLP 287 (834)
Q Consensus 212 ~ld~~y~~~ggl~~y~~~a~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~-~vP---~g~~l~~~~~~~~~~~~~Gle~L~ 287 (834)
.||..| +|||.+|+++|++++. +.. +. ++++.+ ++| .+..++.+++...+|+++|+++|+
T Consensus 50 ~~d~~~--~~gl~~~~~~a~~~l~-~~~--~~-----------~~~~~~~p~P~~~~~~~l~~~~~~~~~~~~~Gl~~i~ 113 (630)
T 3ogz_A 50 MFSNMY--PGGVAQYIRNGHELLA-RES--EE-----------VDFAALEMPPLIFEAPSLHRRTAERTALENAGTAMLC 113 (630)
T ss_dssp HGGGTS--TTHHHHHHHHHHHHHH-HHT--SC-----------CCCSEEECCSCEEECCCTTCCCHHHHHHHHHHHHHGG
T ss_pred hhChhh--hhhHHHHHHHHHHHhh-ccc--cC-----------CcccccccCCCCCccccccCCHHHHHHHHHHhHHHHh
Confidence 999988 5999999999999993 321 11 233433 233 466666667778899999999999
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
|+|||+||||||||||+++||+ +|||+++ +++||||++++||++ ++| +.||||||||+ +||++|+
T Consensus 114 kvavvllaGGlGTRLG~~~pK~--~lpv~~~--s~ks~lql~~e~i~~-------~~g--~~iPl~IMTS~--~T~~~T~ 178 (630)
T 3ogz_A 114 KTVFVLVAGGLGERLGYSSIKV--SLPVETA--TNTTYLAYYLRWAQR-------VGG--KEVPFVIMTSD--DTHDRTL 178 (630)
T ss_dssp GEEEEEECCCEEGGGTEEEEGG--GSBSCTT--TCCBHHHHHHHHHHH-------HHC--TTCCEEEEECT--TTHHHHH
T ss_pred hceEEEecCCcccccCCCCCcc--cceecCC--CCCcHHHHHHHHHHH-------HhC--CCCcEEEEecc--cchHHHH
Confidence 9999999999999999999999 9999977 999999999999993 357 89999999999 7999999
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcC------------------ch
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKG------------------IF 429 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sG------------------lL 429 (834)
+||++ ||++++||+||+|+++||+++++|+++++++++++|+|+||||||.+|+++| +|
T Consensus 179 ~~~~~---fgl~~~~V~~F~Q~~~P~i~~~~g~l~l~~~~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lL 255 (630)
T 3ogz_A 179 QLLRE---LQLEVPNLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLV 255 (630)
T ss_dssp HHHHH---TTCCCTTEEEEECCCEECBSSTTCCBCBCTTSSBCEECCCTTHHHHHHHHCBC--------------CCBHH
T ss_pred HHHHH---hCCCcccEEEEEcCCEEEEecCCCceeecCCCcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHH
Confidence 99999 9999999999999999999878899999999999999999999999999999 99
Q ss_pred HHHHHcCceEEEEEeCCCCcccc-cHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEec
Q 003283 430 KWFHDNGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYT 508 (834)
Q Consensus 430 d~l~~~Gikyi~v~~vDN~La~v-DP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYs 508 (834)
++|+++|++|+||+||||+|+++ ||.| +|+++.++++|++++|.|+ ++|++|++|+.++.||++ ++++||||+
T Consensus 256 d~l~~~Gieyi~v~~vDN~L~~~~DP~~---lG~~~~~~~d~~~kvv~r~--p~E~vG~l~~~~~~dGk~-~~v~vVEYs 329 (630)
T 3ogz_A 256 NDWLAAGYESIVFIQDTNAGATITIPIS---LALSAEHSLDMNFTCIPRV--PKEPIGLLCRTKKNSGDP-WLVANVEYN 329 (630)
T ss_dssp HHHHHTTCCEEEEECTTBTTHHHHHHHH---HHHHHHTTCSEEEEEECCC--SSCSSCEEEEEESSTTSC-CEEEEECHH
T ss_pred HHHHHcCCEEEEEEccCCccccccCHHH---hHHHHhcCCCEEEEEEECC--CCcceeeEEEEecCCCce-eeeeEEEec
Confidence 99999999999999999999987 9966 8999999999999986653 688999999866679981 134789999
Q ss_pred ccCccCC----CCCC-CCCCCccccCccceeeeEEeHHHHHhhhcccccCCccccccccCCCcceecCCCCccccCccee
Q 003283 509 EFDKFGI----TRGP-FSSNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRL 583 (834)
Q Consensus 509 El~~~~~----~~~~-~~dg~l~s~f~~Ninnl~fsL~~L~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~~~~~p~rL 583 (834)
|++++.. ++++ +.+.+.++.||||||||||+|++|.+.+.. ..+.+|.+| ||| |+|.++ ..+++++||
T Consensus 330 ei~~~~~~~~~~~g~~~~~~~~~~~f~GNtNnl~~~L~a~~~~l~~-~~~~ip~~v-NpK----~~d~~~-~~~~~~~qL 402 (630)
T 3ogz_A 330 VFAEVSRALNKDGGDEVSDPTGFSPFPGSVNTLVFKLSSYVDRLRE-SHGIVPEFI-NPK----YSDETR-RSFKKPARI 402 (630)
T ss_dssp HHHHHHHHC------------CCCSSCEEEEEEEEEHHHHHHHHHH-HTTCCCCEE-CCC----BSSSSS-CCBSSCBCE
T ss_pred cCCHhHhhccCCCccccccccccccccccceeeeEEHHHHHHHHHh-ccCccceec-CCc----ccCCcc-cccCcchhh
Confidence 9999852 1233 344455788999999999999999988876 578899655 998 999875 468889999
Q ss_pred ccchhhhhhhhccccccccccceeeecccceeeeeccCCCchhhhhccccCCCCCCChhhhHHHHHHHHHHHHHHCCccc
Q 003283 584 ECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKL 663 (834)
Q Consensus 584 E~~Mqdi~~~F~~~y~~~~~~~~f~~~~R~~~FsPvKn~~~sa~k~~~~~~~~~~~sp~ta~~dl~~~~~~~L~~aG~~v 663 (834)
||||||++++|+. ...++++++++| .+|+||||+..+|+++...+ .+++||+|+++|||+++++||++||+++
T Consensus 403 Et~m~d~~~~F~~----~~~~v~~~~V~R-~~F~PVKn~~~~a~~k~~~g--~~~~sp~t~~~dly~~~~~~L~~aG~~v 475 (630)
T 3ogz_A 403 ESLMQDIALLFSE----DDYRVGGTVFER-FSYQPVKNSLEEAAGLVAQG--NGAYCAATGEAAFYELQRRRLKAIGLPL 475 (630)
T ss_dssp ECCGGGGGGGCCT----TTCCEEEEECCG-GGCCBCCBCHHHHHHHHHTT--CCCCBHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hhHHHHHHHhccc----cCcceeEEEECC-CeeecccCChhHhhhhhccC--CCcCChHHHHHHHHHHHHHHHHHcCcee
Confidence 9999999999961 233788999999 89999999999988777764 3578999999999999999999999998
Q ss_pred Cc---cc---CCCc-ccccCCCeEEEeCCCcccc--HHHHhcccCC--C-CCCCCcEEEEEeceEEeeceEEEEEEEEEe
Q 003283 664 PE---IE---GNDK-YIDDGPPYLILLHPALGLL--WEVTRQKFKG--G-SVSKGSELQIEVAEFLWRNVQLDGSLIIVA 731 (834)
Q Consensus 664 ~~---~~---~~~~-~~~~~P~~~I~L~P~~~~~--~~~~~~k~~~--g-si~~~S~L~VeG~~~f~~~v~ldGslvI~a 731 (834)
+. ++ +++. +++.||. |+|+|+|+++ |+++++||++ + +|+++|+|+|+|+ ++|+||+|||+|+|.|
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~P~--i~l~p~~~~~~~~~~~~~k~~~~~~~~i~~~S~L~veg~-v~~~~l~LdG~lvI~a 552 (630)
T 3ogz_A 476 FYSSQPEVTVAKDAFGVRLFPI--IVLDTVCASSGSLDDLARVFPTPEKVHIDQHSTLIVEGR-VIIESLELYGALTIRG 552 (630)
T ss_dssp CCCCSCSEEETTTTEEECCCSE--EEECHHHHTTCCHHHHHHHCSSGGGEEECTTCEEEEESS-EEESCEEEESEEEEEC
T ss_pred cccccchhhhhcCccccCCCCE--EEEeccccccccHHHHHHHhCCCCCceecCCcEEEEEEE-EEEEEEEEeeEEEEEc
Confidence 83 32 5676 8889995 9999999999 9999999999 5 8999999999999 9999999999999999
Q ss_pred cCCCCCccccCCCccceecccccceEEEeeeEEeeCceeeecC----CC-CCCcccceeeeeEEEEEecceeeEecc
Q 003283 732 ENVMGSTRIADNGESILQYGYRCGRCKLNNVKVLNKGIDWDCG----DN-TYWKHDVQWFEALKVILHGNAEFEASD 803 (834)
Q Consensus 732 ~~~~g~~~~~~~g~~i~~~~~~~g~~~l~~~~V~N~G~~~~~~----~~-~~~~~e~~r~~~~~i~~~~~~ef~a~~ 803 (834)
++ |+.. .| .|++++ +|+|+||.|.++ +. +...+|+.|||||+|+++|+.|++...
T Consensus 553 ~~--~~~~-----~~---------~v~~~~-~v~n~g~~~~~~~~~~~~~~~~~~~~~~irg~~~~~~e~~~~~~~~ 612 (630)
T 3ogz_A 553 PT--DSMA-----LP---------HVVRNA-VVRNAGWSVHAILSLCAGRDSRLSEVDRIRGFVLKKTAMAVMDCNT 612 (630)
T ss_dssp CS--STTS-----CC---------EEECSE-EEECCCCEEEECCTTC----CCCCHHHHTTTEEEECCCCEEECC--
T ss_pred CC--CCcc-----Cc---------eEEecc-eEecCCcEEEEcccccccccCCCChhhcccceeEEeeeEEEEEecC
Confidence 95 3421 23 388888 999999999999 43 337899999999999999999998665
No 2
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*
Probab=100.00 E-value=3.1e-84 Score=735.20 Aligned_cols=444 Identities=18% Similarity=0.212 Sum_probs=376.0
Q ss_pred cHHHHHHHHHHcCCccccccCccchhhhhhhhhHHHHHHHHHhhhhccccCCCccccccccchhhHHHHHHHHHHHHHH-
Q 003283 135 DQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEI- 213 (834)
Q Consensus 135 ~~~~l~~~L~~~gQ~Hll~~~~~w~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~Ll~qL~~l- 213 (834)
++..|+++|.++||+|||++ |++ |+++ +|++|++||..+
T Consensus 5 ~~~~l~~~l~~~gQ~hl~~~---~~~----------------------------------l~~~---ek~~l~~ql~~~~ 44 (486)
T 2yqc_A 5 SQQQIIDSFKQANQDQLFQY---YDS----------------------------------LTID---QQQEFIDQLSTIE 44 (486)
T ss_dssp CHHHHHHHHHHTTCGGGGTT---GGG----------------------------------SCHH---HHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHcCcHHHhhh---hcc----------------------------------CCHH---HHHHHHHHHHhCc
Confidence 57889999999999999999 655 7766 899999999999
Q ss_pred hccccCcchhHHHHHHHHHHHHcccccccccccccccccccccccc--ccCCCCcccC---CChHHHHHHHHHhhhccC-
Q 003283 214 EQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLE--IHVPSGLDLS---QNTEYAAQAALWGIEGLP- 287 (834)
Q Consensus 214 d~~y~~~ggl~~y~~~a~~ll~~s~~~~~~~~~~~~~~~~~~~~~~--~~vP~g~~l~---~~~~~~~~~~~~Gle~L~- 287 (834)
|. .++.+|++++++ .+.. . .+++ .++|++...+ .+++...+|+++|+++|+
T Consensus 45 d~-----~~l~~~~~~~~~---~~~~---~------------~~~~~i~p~p~~~~~~~~~~~~~~~~~~~~~G~~~i~~ 101 (486)
T 2yqc_A 45 EP-----AKLISTVEQAIQ---FSQT---N------------STSRNFTQLPNEQTASTLDLSKDILQNWTELGLKAIGN 101 (486)
T ss_dssp SH-----HHHHHHHHHHHH---HTC-------------------CCCEECCCGGGEEETTTSCHHHHHHHHHHHHHHHHT
T ss_pred CH-----HHHHHHHHHHHh---cccc---c------------cccccccCCChhhccccccCChHHHHHHHHHHHHHHhh
Confidence 76 688999999984 2210 1 1111 2677765433 345666788899999995
Q ss_pred -cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcC--CcccceEEEecCCCCCchH
Q 003283 288 -ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYG--KQCITPVAIMTSSAKNNHE 364 (834)
Q Consensus 288 -kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g--~~~~IPl~IMTS~~~~Th~ 364 (834)
|+|+|+||||+|||||++.||+ |+||+++ +||||||+++++|+++++++.+++| +.+.||||||||+ .||+
T Consensus 102 gkvavvlLaGG~GTRLg~~~PK~--l~~v~l~--~gk~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~--~t~~ 175 (486)
T 2yqc_A 102 GEVAVLLMAGGQGTRLGSSAPKG--CFNIELP--SQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSG--PTRN 175 (486)
T ss_dssp TCEEEEEEEESBCGGGTCSSBGG--GCBCCCT--TCCBHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECG--GGHH
T ss_pred CCeEEEEEcCCccccCCCCCCCc--cceecCC--CCCcHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECC--CCHH
Confidence 8999999999999999999999 9999987 9999999999999999999988877 7789999999999 7999
Q ss_pred HHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCC-cccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEE
Q 003283 365 RITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDG-QWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVR 443 (834)
Q Consensus 365 ~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dg-ki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~ 443 (834)
.|++||++|+|||++.++|+||+|+++||++. +| ++++++++.++|+|+||||+|.+|+++|+||+|+++|++|++|+
T Consensus 176 ~t~~~~~~~~~fgl~~~~v~~f~Q~~~P~i~~-dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~ 254 (486)
T 2yqc_A 176 ATESFFIENNYFGLNSHQVIFFNQGTLPCFNL-QGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMY 254 (486)
T ss_dssp HHHHHHHHTGGGGSCGGGEEEEECCEEECBCT-TSSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEE
T ss_pred HHHHHHhhccccCCCcceEEEEecccceeEcC-CCCccccCCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEEE
Confidence 99999999999999999999999999999994 89 99999999999999999999999999999999999999999999
Q ss_pred eCCCCcccc-cHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCC
Q 003283 444 QVSNVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSS 522 (834)
Q Consensus 444 ~vDN~La~v-DP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~d 522 (834)
|+||+||++ ||.| +|+++.+++++.+++ ++|+.++|++|++|.. ..||+ ++||||+|+|++. ++..+.+
T Consensus 255 ~vDN~l~~~~Dp~~---lg~~~~~~~~~~~~v-v~k~~~~e~~Gvl~~~-~~dg~----~~vvEy~E~~~~~-~~~~~~~ 324 (486)
T 2yqc_A 255 CVDNCLVKVADPIF---IGFAIAKKFDLATKV-VRKRDANESVGLIVLD-QDNQK----PCVIEYSEISQEL-ANKKDPQ 324 (486)
T ss_dssp ETTBTTCCTTCHHH---HHHHHHHTCSEEEEE-EECCSTTCCCCEEEEE-TTTTE----EEEECGGGSCHHH-HHCEETT
T ss_pred CCCCceeeccCHHH---HHHHHHcCCCEEEEE-EEcCCCCCceeEEEEE-ecCCC----EEEEEEecCCHHH-hhccccc
Confidence 999999987 9965 899999999999996 7777899999999971 12898 9999999999985 2222222
Q ss_pred --CCccccCc-cceeeeEEeHHHHHhhhcccccCC---ccccccccCCCcceecC-CCCc---cccCcceeccchhhhhh
Q 003283 523 --NGLQADFP-ANTNILYVDLASAELVGSSENERS---LPGMVLNTKKPIVYMDN-FGDT---HSVPGGRLECTMQNIAD 592 (834)
Q Consensus 523 --g~l~s~f~-~Ninnl~fsL~~L~~vl~~~~~~~---Lp~hIanpKKkIpy~D~-~g~~---~~~~p~rLE~~Mqdi~~ 592 (834)
+.+ .|. +|||||||++++|++++.+ ..+. ||+|++. |||||+|+ +|.. ..++++||||||||++.
T Consensus 325 ~~~~~--~~~~~Ni~~~~~~l~~L~~~l~~-~~~~~~~lp~~v~~--Kki~~~d~~~g~~~~p~~pn~~klE~~~~d~~~ 399 (486)
T 2yqc_A 325 DSSKL--FLRAANIVNHYYSVEFLNKMIPK-WISSQKYLPFHIAK--KKIPSLNLENGEFYKPTEPNGIKLEQFIFDVFP 399 (486)
T ss_dssp EEEEE--SSCEEEEEEEEEEHHHHHHHHHH-HTTCTTTSCCEEEE--ECCCEECTTTCCEECCSSCCEEEEECCGGGGGG
T ss_pred ccccc--cccceeEEEEEEeHHHHHHHHHh-hcCcccCCcceEec--cccCccccccCeeccCCCCCeeeeeehHhhHHh
Confidence 333 255 4999999999999997765 4566 9999977 89999996 4532 23457899999999988
Q ss_pred hhccccccccccceeeecccceeeeeccCCCchhhhhccccCCCCCCChhhhHHHHHHHHHHHHHHCCcccCcccCCCcc
Q 003283 593 NFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKY 672 (834)
Q Consensus 593 ~F~~~y~~~~~~~~f~~~~R~~~FsPvKn~~~sa~k~~~~~~~~~~~sp~ta~~dl~~~~~~~L~~aG~~v~~~~~~~~~ 672 (834)
.|+ ..++++++++|+.+|+||||+++++ .|||+||+.|||++|++||++||+++++ ...
T Consensus 400 ~~~------l~~~~~~~V~R~~~FsPvKn~~~~~-----------~dsp~ta~~~l~~~~~~~l~~aG~~~~~----~~~ 458 (486)
T 2yqc_A 400 SVE------LNKFGCLEVDRLDEFSPLKNADGAK-----------NDTPTTCRNHYLERSSKWVIQNGGVIDN----QGL 458 (486)
T ss_dssp GSC------GGGEEEEEECHHHHCCBCCSCTTSS-----------SSSHHHHHHHHHHHHHHHHHHTTCEECT----TCC
T ss_pred hcc------cCceEEEEECcccceeeecCCCCCC-----------CCCHHHHHHHHHHHHHHHHHHCCCeecC----CCc
Confidence 863 3478889999999999999987653 4699999999999999999999999864 234
Q ss_pred cccCCCeEEEeCCC
Q 003283 673 IDDGPPYLILLHPA 686 (834)
Q Consensus 673 ~~~~P~~~I~L~P~ 686 (834)
++++|. |.+.-.
T Consensus 459 ~eisp~--~sy~ge 470 (486)
T 2yqc_A 459 VEVDSK--TSYGGE 470 (486)
T ss_dssp CBCCTT--TCSSST
T ss_pred EEEcce--eeECCC
Confidence 677886 565543
No 3
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A
Probab=100.00 E-value=7.9e-83 Score=721.82 Aligned_cols=424 Identities=17% Similarity=0.189 Sum_probs=331.7
Q ss_pred cchhhHHHHHHHHHHHHHHhccccCcchhHHHHHHHHHHHHccccccccccccccccccccccccc-cCCCCcccCCChH
Q 003283 195 LEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEI-HVPSGLDLSQNTE 273 (834)
Q Consensus 195 L~~~~~~~~~~Ll~qL~~ld~~y~~~ggl~~y~~~a~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~-~vP~g~~l~~~~~ 273 (834)
|+++ +|+.|.+||+.+.. +++++ +.... .... ++.+ ++|++...++.+.
T Consensus 63 l~~~---~~~~~~~el~~f~~----------lf~r~---l~~~~--~~~~------------~~~i~p~p~~~~~~~~~l 112 (528)
T 3r3i_A 63 ASSH---EFEHTKKDLDGFRK----------LFHRF---LQEKG--PSVD------------WGKIQRPPEDSIQPYEKI 112 (528)
T ss_dssp CCTT---TTHHHHHHHHHHHH----------HHHHH---HHC---------------------CCCCCCCTTTSEEHHHH
T ss_pred cCHH---HHHHHHHHHHHHHH----------HHHHH---Hhhcc--CCCC------------HHHCcCCCHHHccCHhhc
Confidence 6655 79999999987743 44444 33221 0111 1222 5666654443221
Q ss_pred HHHHHHH--HhhhccCcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccce
Q 003283 274 YAAQAAL--WGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITP 351 (834)
Q Consensus 274 ~~~~~~~--~Gle~L~kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IP 351 (834)
..++. ....+++|+|||+||||||||||+++||+ +|||. +|+||||++++||++++ ++|| +.||
T Consensus 113 --~~~~~~~~~~~~l~kvavvlLaGGlGTRLG~~~PK~--~i~V~----sgktflql~~eqI~~l~----~~~g--~~IP 178 (528)
T 3r3i_A 113 --KARGLPDNISSVLNKLVVVKLNGGLGTSMGCKGPKS--LIGVR----NENTFLDLTVQQIEHLN----KTYN--TDVP 178 (528)
T ss_dssp --TTSCCCCSSCTTCTTEEEEEECCCBCTTTTCSSBGG--GSEEE----TTEEHHHHHHHHHHHHH----HHHT--CCCC
T ss_pred --CCccccchhhhhcCceEEEEeCCCCccccCCCCCcc--ceecC----CCCcHHHHHHHHHHHHH----HHhC--CCCC
Confidence 11111 13456779999999999999999999999 99994 99999999999999998 5678 8999
Q ss_pred EEEecCCCCCchHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccC------CCCccccCCCCcHHHHHHHh
Q 003283 352 VAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMR------PFAPVCKPGGHGAIWKLAHD 425 (834)
Q Consensus 352 l~IMTS~~~~Th~~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~------~~~i~~~P~GHGdIy~aL~~ 425 (834)
||||||+ +||++|++||++|+||| .||++|+|+++||++ .+|+++++. +++++|+|+||||||.+|++
T Consensus 179 l~IMTS~--~T~~~T~~~f~k~~~fg---~~V~~F~Q~~~P~i~-~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~ 252 (528)
T 3r3i_A 179 LVLMNSF--NTDEDTKKILQKYNHCR---VKIYTFNQSRYPRIN-KESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYN 252 (528)
T ss_dssp EEEEECT--TTHHHHHSSCGGGTTSS---CCEEEEECCCBCCEE-TTTCCCC-------------CBCCBTTTHHHHHHH
T ss_pred EEEEecc--chhHHHHHHHHhcCccC---CCeEEEEeCCeeeEe-cCCceecccccccCCCcceeeCcCCChHHHHHHHH
Confidence 9999999 79999999999999999 599999999999999 678999975 88999999999999999999
Q ss_pred cCchHHHHHcCceEEEEEeCCCCcccccHhHHHHhhhhhhc----CCceeEEEeeecCCCCcCceEEEEeecCCCccccc
Q 003283 426 KGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHH----GKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYG 501 (834)
Q Consensus 426 sGlLd~l~~~Gikyi~v~~vDN~La~vDP~~l~flG~~~~~----~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~ 501 (834)
+|+||+|+++|+||+||+||||+||++||.| +|+++.+ +++|.+++ ++|+.++|++|+||+ .||+
T Consensus 253 sGlLd~l~~~Gieyi~v~nvDNlga~vDp~~---Lg~~~~~~~~~~~d~~~kV-v~Kt~~dek~Gvl~~---~dGk---- 321 (528)
T 3r3i_A 253 SGLLDTFIGEGKEYIFVSNIDNLGATVDLYI---LNHLMNPPNGKRCEFVMEV-TNKTRADVKGGTLTQ---YEGK---- 321 (528)
T ss_dssp HSHHHHHHHTTCCEEEEEETTBTTCCCCHHH---HHHHSSCSSSCCCSEEEEE-CCCCTTCCSSCEEEC---SSSS----
T ss_pred CChHHHHHhcCCEEEEEEccCCcccccCHHH---HHHHHhcccccCCcEEEEE-eEccccCCcccEEEE---ECCe----
Confidence 9999999999999999999999999999976 7999998 89999996 778899999999998 7999
Q ss_pred eEEEEecccCccCCCCCCCCCCCccccCcc-ceeeeEEeHHHHHhhhcccccCCccccccccCCCcceecCCCCccccCc
Q 003283 502 LSCIEYTEFDKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPG 580 (834)
Q Consensus 502 ~~vVEYsEl~~~~~~~~~~~dg~l~s~f~~-Ninnl~fsL~~L~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~~~~~p 580 (834)
++||||+|+|++.. + ++++.++|++ |||||||+|++|+++++. ....||.|+ ||| ++|. .+++
T Consensus 322 ~~vvEyseip~e~~-~----~~~g~~~f~~~Ntnnlw~~L~~L~~v~~~-~~l~Lp~iv-n~K----~vd~-----~~~v 385 (528)
T 3r3i_A 322 LRLVEIAQVPKAHV-D----EFKSVSKFKIFNTNNLWISLAAVKRLQEQ-NAIDMEIIV-NAK----TLDG-----GLNV 385 (528)
T ss_dssp CEEECTTSSCGGGT-T----TSSCSSSCCCCEEEEEEEEHHHHHHHHHT-TCCCCCCEE-EEE----CCSS-----SSCE
T ss_pred EEEEEecCCChhHh-h----ccCCcccCCeEEEEEEEEEHHHHHHHHHh-CCCCCCcee-cCc----ccCC-----CCCE
Confidence 89999999999963 2 2344667996 999999999999999987 567899776 766 5653 2478
Q ss_pred ceeccchhhhhhhhccccccccccceeeecccceeeeeccCCCchhhhhccccCCCCCCChhhhHHHHHHHHHHHHHHCC
Q 003283 581 GRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCH 660 (834)
Q Consensus 581 ~rLE~~Mqdi~~~F~~~y~~~~~~~~f~~~~R~~~FsPvKn~~~sa~k~~~~~~~~~~~sp~ta~~dl~~~~~~~L~~aG 660 (834)
+|||++|+|++..|++ ....+++|+- |+||||+..-. +++..-
T Consensus 386 iqlEt~igd~i~~f~~--------~~~i~VpR~r-F~PvKn~sdLl----------------------------l~~Sdl 428 (528)
T 3r3i_A 386 IQLETAVGAAIKSFEN--------SLGINVPRSR-FLPVKTTSDLL----------------------------LVMSNL 428 (528)
T ss_dssp EEEEBCSTTCSTTSSS--------CCCEECCGGG-CCBCCSHHHHH----------------------------HHHSTT
T ss_pred EEeHHHHHHHHHhccC--------cEEEEEehHH-cccccchHHHH----------------------------HHhcce
Confidence 9999999999999862 2346778875 99999933111 122222
Q ss_pred cccCcccC-CCcccccCCCeEEEeCCCccccHHHHhcccCC-CCCCCCcEEEEEeceEEeeceEEEEEEEEEecC
Q 003283 661 IKLPEIEG-NDKYIDDGPPYLILLHPALGLLWEVTRQKFKG-GSVSKGSELQIEVAEFLWRNVQLDGSLIIVAEN 733 (834)
Q Consensus 661 ~~v~~~~~-~~~~~~~~P~~~I~L~P~~~~~~~~~~~k~~~-gsi~~~S~L~VeG~~~f~~~v~ldGslvI~a~~ 733 (834)
+.+..... .......+..++|.|+|. |+++++|++||++ ++|.++++|+|+|+|+|++||+|+|+|+|.|++
T Consensus 429 y~l~~g~l~~~~~r~~~~~P~v~L~~~-~~~v~~f~~rf~~iP~l~~~~~LtV~Gdv~fg~~v~l~G~v~i~~~~ 502 (528)
T 3r3i_A 429 YSLNAGSLTMSEKREFPTVPLVKLGSS-FTKVQDYLRRFESIPDMLELDHLTVSGDVTFGKNVSLKGTVIIIANH 502 (528)
T ss_dssp SEEETTEEECCSSCSSCCCCEEEECTT-SCSHHHHHHHCSSCCEEEEEEEEEEESEEECCTTCEEEEEEEEECCT
T ss_pred eEeeCCeEEecccccCCCCCEEEeCcc-cCcHHHHHHhCCCCCCcccCCEEEEecceEECCCcEEEEEEEEEcCC
Confidence 22211000 000111222236999999 9999999999999 799999999999999999999999999999884
No 4
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}
Probab=100.00 E-value=1.7e-81 Score=706.44 Aligned_cols=380 Identities=16% Similarity=0.098 Sum_probs=317.1
Q ss_pred HhhhccCcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCC
Q 003283 281 WGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAK 360 (834)
Q Consensus 281 ~Gle~L~kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~ 360 (834)
.|+++|+|+|||+||||||||||+++||+ +|||+ +|+||||++++||+++|+ ++| +.||||||||+
T Consensus 69 ~G~~~L~kvavvlLaGGlGTRLG~~~pKg--~~~v~----sgksflql~~eqI~~l~~----~~~--~~iPl~IMTS~-- 134 (484)
T 3gue_A 69 ENTALLRQAVVLKLNGGLGTGMGLNGPKS--LLQVK----NGQTFLDFTALQLEHFRQ----VRN--CNVPFMLMNSF-- 134 (484)
T ss_dssp CCHHHHTTEEEEEEECCCCGGGTCSSCGG--GSEEE----TTEEHHHHHHHHHHHHHH----HHT--CCCCEEEEECT--
T ss_pred HHHHHHhhcEEEEEcCCcccccCCCCCce--eeecC----CCCcHHHHHHHHHHHHHH----HcC--CCceEEEECCc--
Confidence 69999999999999999999999999999 99996 999999999999999994 567 89999999999
Q ss_pred CchHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCccc-ccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceE
Q 003283 361 NNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWL-VMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKG 439 (834)
Q Consensus 361 ~Th~~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~-l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Giky 439 (834)
+||++|++||++|+|||++++||++|+|+++||++.+++.++ ++++++++|+|+||||+|.+|+++|+||+|+++|+||
T Consensus 135 ~T~~~T~~~~~k~~~Fgl~~~~v~~F~Q~~~P~i~~dg~~~i~~~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Giey 214 (484)
T 3gue_A 135 STSGETKNFLRKYPTLYEVFDSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRY 214 (484)
T ss_dssp TTHHHHHHHGGGCHHHHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCE
T ss_pred chhHHHHHHHHhCcccCCCccceEEEEeCceeeEecCCCceeecCCCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEE
Confidence 799999999999999999999999999999999995544444 4677899999999999999999999999999999999
Q ss_pred EEEEeCCCCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEe-------ecCCCccccceEEEEecccCc
Q 003283 440 ATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEK-------KNLDGKWAYGLSCIEYTEFDK 512 (834)
Q Consensus 440 i~v~~vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~-------~~~dGk~~~~~~vVEYsEl~~ 512 (834)
+||+||||+++.+||.| +||++.++++|++++ ++|+.++|+||+||+. .+.||+ +++|||+|+|+
T Consensus 215 i~v~~vDNL~a~~Dp~~---lG~~~~~~~d~~~kv-v~Kt~~dekgG~l~~~~~~~~~~~~~dG~----~~vvEyseip~ 286 (484)
T 3gue_A 215 MFISNGDNLGATLDVRL---LDYMHEKQLGFLMEV-CRRTESDKKGGHLAYKDVIDETTGQTRRR----FVLRESAQCPK 286 (484)
T ss_dssp EEEEETTCTTCCCCHHH---HHHHHHTTCSEEEEE-EECCTTCCSSEEEEEEC--------CCCE----EEEEEGGGSCG
T ss_pred EEEEcCCCcccccCHHH---HHHHHhcCCCEEEEE-EECCCCCCceeEEEEEccccccccCCCCC----EEEEEeccCCH
Confidence 99999999555559966 899999999999997 6667799999999982 123898 99999999999
Q ss_pred cCCCCCCCCCCCccccCcc-ceeeeEEeHHHHHhhhcccc--cCCccccccccCCCcceecCCCCccccCcceeccchhh
Q 003283 513 FGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSEN--ERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQN 589 (834)
Q Consensus 513 ~~~~~~~~~dg~l~s~f~~-Ninnl~fsL~~L~~vl~~~~--~~~Lp~hIanpKKkIpy~D~~g~~~~~~p~rLE~~Mqd 589 (834)
+...+....+| |.. ||||+|+++.+|++++++ . ...||+|+ |+| ++|+. ++.+++++||||||||
T Consensus 287 e~~~~f~~~~g-----~~~FNtnNi~~~l~~l~~~l~~-~~g~~~Lp~~v-n~K----~id~~-k~~~~~~iqlE~~~~d 354 (484)
T 3gue_A 287 EDEDSFQNIAK-----HCFFNTNNIWINLMELKKMMDE-QLGVLRLPVMR-NPK----TVNPQ-DSQSTKVYQLEVAMGA 354 (484)
T ss_dssp GGHHHHTCTTT-----SCEEEEEEEEEEHHHHHHHHHH-TTTCCCCCCEE-EEE----ESSTT-CTTSCEEEEEECCGGG
T ss_pred HHHhhhcCCCC-----ceEeEeeeEEEEHHHHHHHHHh-ccCcCCCCcEe-ccc----eecCC-CCCCCCEeehHHHHHH
Confidence 86322123333 333 999999999999999986 4 33579888 544 44654 2456789999999999
Q ss_pred hhhhhccccccccccceeeecccceeeeeccCCCchhhhhccccCCCCCCChhhhHHHHHHHHHHHHHHCCcccCccc--
Q 003283 590 IADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIE-- 667 (834)
Q Consensus 590 i~~~F~~~y~~~~~~~~f~~~~R~~~FsPvKn~~~sa~k~~~~~~~~~~~sp~ta~~dl~~~~~~~L~~aG~~v~~~~-- 667 (834)
++..|+ ++++.+++| .+|+||||+. ++ .++++..+.+.+..
T Consensus 355 ~~~~~~--------~~~~ieV~R-~rF~PvKn~s-dL---------------------------l~~~Sdly~l~~~~~l 397 (484)
T 3gue_A 355 AISLFD--------RSEAVVVPR-ERFAPVKTCS-DL---------------------------LALRSDAYQVTEDQRL 397 (484)
T ss_dssp GGTTSS--------SEEEEECCG-GGCCCCSSHH-HH---------------------------HHHHSTTEEECTTSCE
T ss_pred HHHhCC--------ccEEEEECh-hhccccccch-HH---------------------------HHHhhhceeccCCceE
Confidence 999985 466788999 6999999932 22 12233333333210
Q ss_pred -CCCcccccCCCeEEEeCCCccccHHHHhcccCC--CCCCCCcEEEEEeceEEeeceEEEEEEEEEecC
Q 003283 668 -GNDKYIDDGPPYLILLHPALGLLWEVTRQKFKG--GSVSKGSELQIEVAEFLWRNVQLDGSLIIVAEN 733 (834)
Q Consensus 668 -~~~~~~~~~P~~~I~L~P~~~~~~~~~~~k~~~--gsi~~~S~L~VeG~~~f~~~v~ldGslvI~a~~ 733 (834)
.+..-....| +|.|+|.+|+++++|++||++ +||.++++|+|+|+++|++||+|+|+|+|.|.+
T Consensus 398 ~~~~~~~~~~P--~v~L~~~~~~~v~~f~~rf~~giPsl~~~~~L~V~Gdv~fg~~v~l~G~v~i~~~~ 464 (484)
T 3gue_A 398 VLCEERNGKPP--AIDLDGEHYKMIDGFEKLVKGGVPSLRQCTSLTVRGLVEFGADVSVRGNVVIKNLK 464 (484)
T ss_dssp EECGGGTTCCC--EEEECTTTSSSHHHHHHHHTTCCCBCTTEEEEEEESSEEECTTCEEEEEEEEEECS
T ss_pred EeccccCCCCC--eEEECchhcCcHHHHHHhcCCCCCChhhCCEEEEecceEECCCcEEEEEEEEEcCC
Confidence 1111112234 699999999999999999999 599999999999999999999999999999984
No 5
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*
Probab=100.00 E-value=2.3e-79 Score=697.82 Aligned_cols=431 Identities=20% Similarity=0.246 Sum_probs=367.9
Q ss_pred ccHHHHHHHHHHcCCccccccCccchhhhhhhhhHHHHHHHHHhhhhccccCCCccccccccchhhHHHHHHHHHHHHHH
Q 003283 134 LDQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEI 213 (834)
Q Consensus 134 ~~~~~l~~~L~~~gQ~Hll~~~~~w~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~Ll~qL~~l 213 (834)
|++..|+++|.++||+|||++ |++ |+++ +|++|++||..+
T Consensus 1 ~~~~~l~~~l~~~gQ~hl~~~---~~~----------------------------------l~~~---ek~~l~~ql~~~ 40 (505)
T 1jv1_A 1 MNINDLKLTLSKAGQEHLLRF---WNE----------------------------------LEEA---QQVELYAELQAM 40 (505)
T ss_dssp CCHHHHHHHHHHTTCGGGGTT---GGG----------------------------------SCHH---HHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHcCcHHHHhh---hhc----------------------------------CCHH---HHHHHHHHHHHh
Confidence 456779999999999999999 665 7766 999999999999
Q ss_pred hccccCcchhHHHHHHHHHHHHccccccccccccccccccccccccccCCCCcccCC--ChHHHHHHHHHhhhcc--CcE
Q 003283 214 EQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEIHVPSGLDLSQ--NTEYAAQAALWGIEGL--PEL 289 (834)
Q Consensus 214 d~~y~~~ggl~~y~~~a~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~~vP~g~~l~~--~~~~~~~~~~~Gle~L--~kv 289 (834)
|. .++.+|+++|++.+..|+. ..... ..+ .++|++...++ ..+...+|++.|+++| +|+
T Consensus 41 d~-----~~~~~~~~~~~~~~~~s~~-~~~~~---------~~i--~p~p~~~~~~~~~~~~~~~~~~~~Gl~~i~~~kv 103 (505)
T 1jv1_A 41 NF-----EELNFFFQKAIEGFNQSSH-QKNVD---------ARM--EPVPREVLGSATRDQDQLQAWESEGLFQISQNKV 103 (505)
T ss_dssp CH-----HHHHHHHHHHHHCC---------------------CC--BCCCGGGEEETTTTGGGHHHHHHHHHHHHHTTCE
T ss_pred CH-----HHHHHHHHHHHHhhhhccc-cCccc---------ccc--cCCChHhcccccCChHHHHHHHHHhHHhhccCce
Confidence 97 5789999999877655421 01100 011 26676654433 4455678889999998 589
Q ss_pred EEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHH
Q 003283 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSL 369 (834)
Q Consensus 290 avVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~~f 369 (834)
|+|+||||+|||||++.||+ |+||+++ +|+||||+++++|+++|+|+.+++|..+.|||+||||+ .||+.|++|
T Consensus 104 avViLAGG~GTRLg~~~PK~--l~pv~~~--~gk~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~--~t~e~t~~~ 177 (505)
T 1jv1_A 104 AVLLLAGGQGTRLGVAYPKG--MYDVGLP--SRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSG--RTMESTKEF 177 (505)
T ss_dssp EEEEECCCCCCTTSCSSCGG--GCCCCCT--TCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECT--TTHHHHHHH
T ss_pred EEEEEcCCccccCCCCCCCc--cceeecC--CCCcHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecC--CCHHHHHHH
Confidence 99999999999999999999 9999877 99999999999999999999888997789999999999 799999999
Q ss_pred HHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCCc
Q 003283 370 CERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVV 449 (834)
Q Consensus 370 le~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~L 449 (834)
|++|+|||+++++|++|+|+++||++ .+|++++++++.++|+|+||||+|++|+++|+|++|+++|++|++|+|+||+|
T Consensus 178 f~~~~~fGl~~~~I~~f~Q~~~P~i~-~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~Dn~L 256 (505)
T 1jv1_A 178 FTKHKYFGLKKENVIFFQQGMLPAMS-FDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNIL 256 (505)
T ss_dssp HHHTGGGGSCGGGEEEEECCEEECEE-TTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTT
T ss_pred HHhhhhcCCCcCceEEEEecceEEEc-CCCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEECCccc
Confidence 99999999999999999999999999 58999999999999999999999999999999999999999999999999998
Q ss_pred ccc-cHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcccc
Q 003283 450 AAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQAD 528 (834)
Q Consensus 450 a~v-DP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s~ 528 (834)
+.+ ||.| +|++..+++++.+++ ++|+.+++++|+||. .||+ +++|||+|+|++. .+....+|.+ .
T Consensus 257 ~~~~d~~~---lg~~~~~~~~~~~~v-~~k~~~~e~~Gvl~~---~dg~----~~vvEy~E~p~~~-~~~~~~~g~~--~ 322 (505)
T 1jv1_A 257 VKVADPRF---IGFCIQKGADCGAKV-VEKTNPTEPVGVVCR---VDGV----YQVVEYSEISLAT-AQKRSSDGRL--L 322 (505)
T ss_dssp CCTTCHHH---HHHHHHTTCSEEEEE-EECCSTTCSCCEEEE---ETTE----EEEECGGGSCHHH-HHCBCTTSSB--S
T ss_pred cccchHHH---HHHHHHcCCCEEEEE-EEccCCccCcceEEE---ECCe----EEEEEEeeCCHHH-hhhccccccc--c
Confidence 876 9955 899999999999996 777778999999997 5898 8999999999985 3333334443 4
Q ss_pred Ccc-ceeeeEEeHHHHHhhhcccccCCccccccccCCCcceecCCCCcc---ccCcceeccchhhhhhhhcccccccccc
Q 003283 529 FPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTH---SVPGGRLECTMQNIADNFLNTYSSRCYK 604 (834)
Q Consensus 529 f~~-Ninnl~fsL~~L~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~~---~~~p~rLE~~Mqdi~~~F~~~y~~~~~~ 604 (834)
|+. |||||||++++|+++.+. ..+.||+|++. |||||+|.+|... .++++||||||||++..|+ +
T Consensus 323 ~~~~N~~~~~f~l~~L~~i~~~-~~~~l~~hv~~--Kkip~~d~~g~~v~P~~pn~~klE~~i~d~~~~~~--------~ 391 (505)
T 1jv1_A 323 FNAGNIANHFFTVPFLRDVVNV-YEPQLQHHVAQ--KKIPYVDTQGQLIKPDKPNGIKMEKFVFDIFQFAK--------K 391 (505)
T ss_dssp SCEEEEEEEEEEHHHHHHHHHT-TGGGCCCEEEE--ECCCEECTTSCEECCSSCCEEEEECCGGGGGGGCS--------S
T ss_pred cceeeEEEEEecHHHHHHHHHh-hcccCCceecc--cccccccCCCCCcCCCCCCceeHHHHHHHHHhhcC--------c
Confidence 765 999999999999999875 56789999987 8999999766432 2455799999999988874 6
Q ss_pred ceeeecccceeeeeccCCCchhhhhccccCCCCCCChhhhHHHHHHHHHHHHHHCCccc
Q 003283 605 GVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKL 663 (834)
Q Consensus 605 ~~f~~~~R~~~FsPvKn~~~sa~k~~~~~~~~~~~sp~ta~~dl~~~~~~~L~~aG~~v 663 (834)
+++.+++|+.+|+||||+.+++ + .|||+||+.|||++|++||++||+++
T Consensus 392 ~~~~~V~R~~~FsPvKn~~~~~----~------~dsp~ta~~~l~~~~~~~l~~ag~~~ 440 (505)
T 1jv1_A 392 FVVYEVLREDEFSPLKNADSQN----G------KDNPTTARHALMSLHHCWVLNAGGHF 440 (505)
T ss_dssp EEEEEECHHHHCCBCCSCTTSS----S------SSSHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred eEEEEECcccceeeccCCCCCC----C------CCCHHHHHHHHHHHHHHHHHHCCCee
Confidence 7789999999999999987653 1 36999999999999999999999988
No 6
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}
Probab=100.00 E-value=2e-77 Score=663.35 Aligned_cols=343 Identities=18% Similarity=0.250 Sum_probs=312.7
Q ss_pred HHHHHHhhhccC--cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhh-cCCcccceE
Q 003283 276 AQAALWGIEGLP--ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKL-YGKQCITPV 352 (834)
Q Consensus 276 ~~~~~~Gle~L~--kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~-~g~~~~IPl 352 (834)
++|++.|+++|+ |+|||+||||||||||++.||+ |+||+++ +||||||+++++|+++|+|+.+. +|..+.|||
T Consensus 21 ~~~~~~Gl~~i~~gkvavvlLAGG~GTRLG~~~PK~--~~~Vgl~--~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~ 96 (405)
T 3oc9_A 21 KEHYYRGLELISQGKTALITPAGGQGSRLGFEHPKG--MFVLPFE--IPKSIFQMTSERLLRLQELASEYSHQKNVMIHW 96 (405)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSBCTTTTCCSBGG--GCEECSS--SCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEE
T ss_pred HHHHHHHHHHHhcCceEEEEecCCCcccccCCCCCc--cccccCC--CCCcHHHHHHHHHHHHHHHHhhhccccCCCCCE
Confidence 467889999994 9999999999999999999999 9999987 99999999999999999998776 666689999
Q ss_pred EEecCCCCCchHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHH
Q 003283 353 AIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWF 432 (834)
Q Consensus 353 ~IMTS~~~~Th~~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l 432 (834)
|||||+ .||++|++||++|+|||++++||++|+|+++||++ .+|+++++++++++|+|+||||+|++|+++|+||+|
T Consensus 97 ~IMtS~--~t~e~t~~~f~~~~~fGl~~~~i~~f~Q~~~P~i~-~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l 173 (405)
T 3oc9_A 97 FLMTNE--ETIEEINNYFKEHQYFGLSSEQIHCFPQGMLPVVD-FNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFM 173 (405)
T ss_dssp EEEECT--TTHHHHHHHHHHTGGGGSCTTSEEEEECCEEECBC-TTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHH
T ss_pred EEEeCC--ccHHHHHHHHHhCcccCCCccceEEEeeCceeEEe-cCCCeecCCCCccccccCCChHHHHHHHHCCcHHHH
Confidence 999999 79999999999999999999999999999999997 789999999999999999999999999999999999
Q ss_pred HHcCceEEEEEeCCCCcccc-cHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccC
Q 003283 433 HDNGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFD 511 (834)
Q Consensus 433 ~~~Gikyi~v~~vDN~La~v-DP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~ 511 (834)
+++|++|++|+|+||+|+++ ||.| +|+++.+++++.+++ ++|+.++|++|+||+ .||+ ++||||+|+|
T Consensus 174 ~~~Gieyi~v~nvDN~L~~~~Dp~~---lg~~~~~~~d~~~kv-v~k~~~dek~Gvl~~---~dg~----~~vvEysei~ 242 (405)
T 3oc9_A 174 NEKGIKYSVAHNVDNILCKDVDPNM---IGYMDLLQSEICIKI-VKKGFKEEKVGVLVK---EQER----IKVVEYTELT 242 (405)
T ss_dssp HHHTCCEEEEECTTBTTCCSSCHHH---HHHHHHTTCSEEEEE-EECCSTTCSCCEEEE---ETTE----EEEECGGGCC
T ss_pred HhcCCEEEEEEeCCCcccccCCHHH---HHHHHHcCCCEEEEE-EECCCCCCccceEEE---ECCe----eEEEEEeeCC
Confidence 99999999999999988887 9966 899999999999997 667778999999998 7999 8999999999
Q ss_pred ccCCCCCCCCCCCccccCcc-ceeeeEEeHHHHHhhhcccccCCccccccccCCCcceecCCCCc---cccCcceeccch
Q 003283 512 KFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDT---HSVPGGRLECTM 587 (834)
Q Consensus 512 ~~~~~~~~~~dg~l~s~f~~-Ninnl~fsL~~L~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~---~~~~p~rLE~~M 587 (834)
++ ++.+..+|.++ |++ ||+||+|+++||++++. ..||+|+|+ |||||+|.+|+. ..++++|||+||
T Consensus 243 ~e--~e~~~~~g~l~--fn~~Ni~~h~fs~~fL~~i~~----~~l~~h~a~--Kkip~~d~~g~~~~p~~~ngiklE~fi 312 (405)
T 3oc9_A 243 DE--LNKQLSNGEFI--YNCGHISINGYSTSFLEKAAE----YQLPYHIAK--KKVPFVNEQGIVIHPSENNGIKKEIFF 312 (405)
T ss_dssp TT--TTCBCTTSCBS--SCEEEEEEEEEEHHHHHHHTT----CCCCCEEEE--ECCCEECTTSCEECCSSCCEEEEECCG
T ss_pred HH--HhhcCCCCcee--eccceeEeeecCHHHHHHhhh----ccCCcEEec--cccCccCCCCCCcccCCcceeehHHHH
Confidence 99 55666677765 987 99999999999999983 369999999 999999987753 235679999999
Q ss_pred hhhhhhhccccccccccceeeecccceeeeeccCCCchhhhhccccCCCCCCChhhhHHHHHHHHHHHHHHCCcccCc
Q 003283 588 QNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPE 665 (834)
Q Consensus 588 qdi~~~F~~~y~~~~~~~~f~~~~R~~~FsPvKn~~~sa~k~~~~~~~~~~~sp~ta~~dl~~~~~~~L~~aG~~v~~ 665 (834)
+|++..|. ++++.+++|..+|+|+||+++.. .|||+||+.|+++++++||.++|+.+.+
T Consensus 313 fd~f~~~~--------~~~~~eV~R~~eF~PlKn~~g~~-----------~dsp~tar~~l~~~~~~wl~~ag~~~~~ 371 (405)
T 3oc9_A 313 FDVFPLAT--------KVSIFEIQRFIEFSALKNSLNES-----------FDNVNTVKRDWYRLNIYYLKKAGAIVDD 371 (405)
T ss_dssp GGGGGGCS--------CEEEEECCHHHHCCBCCCCTTSS-----------SSSHHHHHHHHHHHHHHHHHHTTCEEEC
T ss_pred HHHHHhcc--------ceEEEEEChHhcccceecCCCCC-----------CCCHHHHHHHHHHHHHHHHHHCCCEEcC
Confidence 88888764 56788999999999999988652 3699999999999999999999998853
No 7
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*
Probab=100.00 E-value=9.9e-79 Score=690.88 Aligned_cols=408 Identities=16% Similarity=0.078 Sum_probs=345.7
Q ss_pred HhhhccCcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCC
Q 003283 281 WGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAK 360 (834)
Q Consensus 281 ~Gle~L~kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~ 360 (834)
+|+++|+++|||+||||||||||++.||+ |+||+ +||||||+++++|++++ ..+| +.|||+||||+
T Consensus 68 ~g~~~l~k~avViLAGGlGTRLg~~~PK~--llpV~----~gk~fLe~~ie~l~~~~----~~~g--~~ip~viMtS~-- 133 (505)
T 2oeg_A 68 CDNAVLQSTVVLKLNGGLGTGMGLCDAKT--LLEVK----DGKTFLDFTALQVQYLR----QHCS--EHLRFMLMDSF-- 133 (505)
T ss_dssp CCHHHHHTEEEEEEECCCCGGGTCCSCGG--GSEEE----TTEEHHHHHHHHHHHHH----HHTC--TTCEEEEEECH--
T ss_pred HHHHHHhcceEEEEcCCcccccCCCCCCc--ccccC----CCCcHHHHHHHHHHHHH----HhcC--CCcCEEEEeCC--
Confidence 79999999999999999999999999999 99996 79999999999999998 4567 78999999999
Q ss_pred CchHHHHHHHH-HhCCCCCCCCceEEEecCCeeeEecCCCccc-ccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCce
Q 003283 361 NNHERITSLCE-RLRWFGRGQSSFQLFEQPLVPAVDAEDGQWL-VMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRK 438 (834)
Q Consensus 361 ~Th~~T~~fle-~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~-l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gik 438 (834)
.||+.|++||+ +|+|||+++++|++|+|+++||+++++++++ ++++..++|+|+||||+|++|+++|+|++|+++|++
T Consensus 134 ~t~e~t~~~f~~~~~~fGl~~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e 213 (505)
T 2oeg_A 134 NTSASTKSFLKARYPWLYQVFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYR 213 (505)
T ss_dssp HHHHHHHHHHHHHCHHHHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCC
T ss_pred CCHHHHHHHHhhhhhccCCCccceEEEEEcCEEeEecCCCceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhcCCC
Confidence 79999999999 9999999999999999999999997666877 677777999999999999999999999999999999
Q ss_pred EEEEEeCCCCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeec-----CCCc--cccc-eEEEEeccc
Q 003283 439 GATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKN-----LDGK--WAYG-LSCIEYTEF 510 (834)
Q Consensus 439 yi~v~~vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~-----~dGk--~~~~-~~vVEYsEl 510 (834)
|++|+|+||+.+.+||.| +|++..+++++.+++ ++|..+++++|++|. ++ .||+ ..|. ++++||+|+
T Consensus 214 ~i~V~N~DNL~~~~D~~l---lg~~~~~~ad~~~~v-~~k~~~d~~~Gvl~~-~~~~~~~~dg~~nvEyn~~~llEyse~ 288 (505)
T 2oeg_A 214 YMFVSNGDNLGATIDKRV---LAYMEKEKIDFLMEV-CRRTESDKKGGHLAR-QTVYVKGKDGQPDAEKRVLLLRESAQC 288 (505)
T ss_dssp EEEEECTTCTTCCCCHHH---HHHHHHHTCSEEEEE-EECCTTCCSSEEEEE-EEEEECCSSSCCCEEEEEEEEEEGGGS
T ss_pred EEEEEECCccccccCHHH---HHHHHhcCCcEEEEE-EEecCCccceeEEEE-ecccccccCCccccccCceeEEEeccC
Confidence 999999999755679955 899999999999997 556668899999987 33 6776 1122 679999999
Q ss_pred CccCCCCCCCCCCCccccCcc-ceeeeEEeHHHHHhhhcccccC--CccccccccCCCcceecCCCCccccCcceeccch
Q 003283 511 DKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENER--SLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTM 587 (834)
Q Consensus 511 ~~~~~~~~~~~dg~l~s~f~~-Ninnl~fsL~~L~~vl~~~~~~--~Lp~hIanpKKkIpy~D~~g~~~~~~p~rLE~~M 587 (834)
|++... +.++.++|++ |||||||+|++|+++++. +.+ .||+|++. |+|||.|+ .+++++||||||
T Consensus 289 p~e~~~-----~~~g~~~f~~~Ninn~~~~l~~l~~~~~~-~~~~~~Lp~~vn~--K~i~~~d~----~~~~~~qlE~~~ 356 (505)
T 2oeg_A 289 PKADME-----SFQDINKYSFFNTNNLWIRLPVLLETMQE-HGGTLPLPVIRNE--KTVDSSNS----ASPKVYQLETAM 356 (505)
T ss_dssp CGGGHH-----HHHCTTTTCEEEEEEEEEEHHHHHHHHHH-TTSSCCCCCEEEE--EESSSSCT----TSCEEEEEECCG
T ss_pred Chhhhh-----cccCccccCeeEEEEEEEEHHHHHHHHhh-hcCccCCcceecc--cccCCCCC----CCCCeEEEeEHH
Confidence 998521 1234567995 999999999999999986 323 57888855 66777764 356899999999
Q ss_pred hhhhhhhccccccccccceeeecccceeeeeccCCCchhhhhccccCCCCCCChhhhHHHHHHHHH--HHHHHCCcccCc
Q 003283 588 QNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAY--DILCQCHIKLPE 665 (834)
Q Consensus 588 qdi~~~F~~~y~~~~~~~~f~~~~R~~~FsPvKn~~~sa~k~~~~~~~~~~~sp~ta~~dl~~~~~--~~L~~aG~~v~~ 665 (834)
||++..|+ .+++++++|+ +|+|+||.. +|.+++.|+|..++ +|+. +|..+
T Consensus 357 ~d~~~~~~--------~~~~~~V~R~-~FsPvKn~~----------------dl~~~~sdly~~~~~~~~~~-~~~~~-- 408 (505)
T 2oeg_A 357 GAAIAMFE--------SASAIVVPRS-RFAPVKTCA----------------DLLALRSDAYVVTDDFRLVL-DDRCH-- 408 (505)
T ss_dssp GGGGGSCT--------TCEEEECCGG-GCCCCSSHH----------------HHHHHHSTTEEECTTCCEEE-CGGGT--
T ss_pred HHHHHhcC--------cceEEEeccc-eeecccCCC----------------CHHHHHHHHHhhcCCceEEE-ccccc--
Confidence 99999986 3568899999 999999921 56788888888877 5655 44432
Q ss_pred ccCCCcccccCCCeEEEeCCCccccHHHHhcccCCC--CCCCCcEEEEEeceEEeeceEEEEEEEEEecCCCCCccccCC
Q 003283 666 IEGNDKYIDDGPPYLILLHPALGLLWEVTRQKFKGG--SVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADN 743 (834)
Q Consensus 666 ~~~~~~~~~~~P~~~I~L~P~~~~~~~~~~~k~~~g--si~~~S~L~VeG~~~f~~~v~ldGslvI~a~~~~g~~~~~~~ 743 (834)
..+|. |.|+|.||++|++|++||++| ||+++|+|+|+|+++|++||+|+|+|+|.|.+. |+
T Consensus 409 --------~~~p~--i~l~p~~~~~~~~~~~r~~~g~psi~~~~~L~v~G~~~f~~~v~l~G~v~i~a~~~-~~------ 471 (505)
T 2oeg_A 409 --------GHPPV--VDLDSAHYKMMNGFEKLVQHGVPSLVECKRVTVKGLVQFGAGNVLTGTVTIENTDS-AS------ 471 (505)
T ss_dssp --------TCCCE--EEECHHHHSSHHHHHHHSTTCCCBCTTEEEEEEESSEECCTTCEEEEEEEEECCSC-SS------
T ss_pred --------CcCCe--EEEChhHcCcHHHHHHhcCCCCCccccCcEEEEEcceEEccCcEEEEEEEEEecCC-CC------
Confidence 23574 999999999999999999996 899999999999999999999999999999831 33
Q ss_pred CccceecccccceEEE-eeeEEeeCceeeecCCC
Q 003283 744 GESILQYGYRCGRCKL-NNVKVLNKGIDWDCGDN 776 (834)
Q Consensus 744 g~~i~~~~~~~g~~~l-~~~~V~N~G~~~~~~~~ 776 (834)
++.| +|+.|+|+||......|
T Consensus 472 ------------~~~ip~g~~l~n~~~~~~~~~~ 493 (505)
T 2oeg_A 472 ------------AFVIPDGAKLNDTTASPQQSTN 493 (505)
T ss_dssp ------------CEECCTTCEEESCEECC-----
T ss_pred ------------cEEeCCCCEEeCceechhhhcc
Confidence 5678 88999999998775444
No 8
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-71 Score=629.03 Aligned_cols=462 Identities=19% Similarity=0.196 Sum_probs=359.7
Q ss_pred hhhhhhHHHHHHHHHhhhhccccCCCccccccccchhhHHHHHHHHHHHHHHhccccCcchhHHHHHHHHHHHHcccccc
Q 003283 162 EARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFER 241 (834)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~Ll~qL~~ld~~y~~~ggl~~y~~~a~~ll~~s~~~~ 241 (834)
.+.++||++|.+|.+.+. .++ ++|+.|.+||..++..| +++++... +.
T Consensus 11 ~~~~~~~~~l~~~~~~~~---------------~~~---~~~~~~~~~~~~~~~~~-------------~~~~~~~~-~~ 58 (488)
T 2i5k_A 11 VAASQMRNALNKLADSSK---------------LDD---AARAKFENELDSFFTLF-------------RRYLVEKS-SR 58 (488)
T ss_dssp CHHHHHHHHTTCCC--------------------------CCSCTHHHHHHHHHHH-------------HHHHHHHH-SC
T ss_pred HHHHHHHHHHHHHHhhcC---------------CCH---HHHHHHHHHHHHHHHHH-------------HHHHhccc-cc
Confidence 467899999999998866 112 37888999998877533 33443211 00
Q ss_pred ccccccccccccccccccc-cCCCCcccCCChHHHHHHHHHhhhccCcEEEEEecCCccccCCCCCCCCCceeeccccCC
Q 003283 242 KTTKSQHVHESMECQFLEI-HVPSGLDLSQNTEYAAQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPY 320 (834)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~-~vP~g~~l~~~~~~~~~~~~~Gle~L~kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~ 320 (834)
+. .+++.+ |+|++...++.+.. .+ ..|.++++++|||+||||+|||||++.||+ ++||.
T Consensus 59 ~~-----------~~~~~i~p~~~~~~~~~~~~~--~~-~~~~~~~~k~avViLAGG~GTRmgs~~PK~--l~~V~---- 118 (488)
T 2i5k_A 59 TT-----------LEWDKIKSPNPDEVVKYEIIS--QQ-PENVSNLSKLAVLKLNGGLGTSMGCVGPKS--VIEVR---- 118 (488)
T ss_dssp CS-----------CCGGGEECCCTTTEEEHHHHH--SS-CCCSTTGGGEEEEEECCCBSGGGTCCSBST--TSCCB----
T ss_pred CC-----------CcccccccCChhcccChhhcc--cc-hhhhhhcCCceEEEEcCCCcccCCCCCCcc--ccccC----
Confidence 11 123333 56666544432211 11 138888889999999999999999999999 99994
Q ss_pred CCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCc
Q 003283 321 CGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQ 400 (834)
Q Consensus 321 sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgk 400 (834)
+||||||++++++++++ +.+| +.|||+||||+ +|++.|++||+++++||+ +|.+|.|+++||++ .+|+
T Consensus 119 ~gk~~Le~~i~~i~~l~----~~~G--~~Ip~vImts~--~t~e~t~~~~~~~~~fg~---~i~~f~Q~~~P~i~-~d~~ 186 (488)
T 2i5k_A 119 EGNTFLDLSVRQIEYLN----RQYD--SDVPLLLMNSF--NTDKDTEHLIKKYSANRI---RIRSFNQSRFPRVY-KDSL 186 (488)
T ss_dssp TTBCHHHHHHHHHHHHH----HHHT--CCCEEEEECCT--TTHHHHHHHHGGGCSSSC---EEEEECCCCEECEE-TTTC
T ss_pred CCCcHHHHHHHHHHHhH----HhcC--CCccEEEEECC--CCHHHHHHHHHhccccCc---eEEEEEeCccceEc-cccc
Confidence 79999999999999987 4567 78999999999 799999999999999997 79999999999999 6799
Q ss_pred ccccCC---CCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCCcccc-cHhHHHHhhhhhhcCCceeEEEee
Q 003283 401 WLVMRP---FAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKLGFASCK 476 (834)
Q Consensus 401 i~l~~~---~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~La~v-DP~~l~flG~~~~~~~~~~~~~vv 476 (834)
++++.+ ++++|+|+||||+|.+|+.+|++++|.++|++|++|+|+|| |++. ||.+ +|++..+++++.+++ +
T Consensus 187 ~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDn-L~~~~d~~~---L~~~~~~~a~~t~~v-~ 261 (488)
T 2i5k_A 187 LPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDN-LGATVDLKI---LNHMIETGAEYIMEL-T 261 (488)
T ss_dssp CBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTB-SSCCCCHHH---HHHHHHSCCSEEEEE-E
T ss_pred eeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCc-CCCcccHHH---HHHHHhcCCcEEEEE-E
Confidence 999755 47999999999999999999999999999999999999999 6664 9965 699999999999997 6
Q ss_pred ecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCccccCcc-ceeeeEEeHHHHHhhhcccccCCc
Q 003283 477 RSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENERSL 555 (834)
Q Consensus 477 RK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s~f~~-Ninnl~fsL~~L~~vl~~~~~~~L 555 (834)
+++.+++++|+||+ .||+ +++|||+|++++...+. ++. ..|+. |||||||++++|++++++ ....|
T Consensus 262 ~~~~p~~~yG~Iv~---~dG~----~~iVE~~e~~~e~~~~~---~~~--~~~~~~Ntgi~~f~~~~L~~~l~~-~~~~l 328 (488)
T 2i5k_A 262 DKTRADVKGGTLIS---YDGQ----VRLLEVAQVPKEHIDEF---KNI--RKFTNFNTNNLWINLKAVKRLIES-SNLEM 328 (488)
T ss_dssp ECCGGGSSSCEEEE---ETTE----EEEECGGGSCTTSHHHH---TCT--TTCCEEEEEEEEEEHHHHHHHHHT-TCCCC
T ss_pred EecCCCCceeEEEE---ECCc----EEEEEeccCCHHHHhhc---ccc--cccCEEEEEEEEEeHHHHHHHHhh-ccCCC
Confidence 77888999999997 5888 99999999999853211 122 24766 999999999999999987 67889
Q ss_pred cccccccCCCcceecCCCCccccCcceeccchhhhhhhhccccccccccceeeecccceeeeeccCCCchhhhhccccCC
Q 003283 556 PGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADM 635 (834)
Q Consensus 556 p~hIanpKKkIpy~D~~g~~~~~~p~rLE~~Mqdi~~~F~~~y~~~~~~~~f~~~~R~~~FsPvKn~~~sa~k~~~~~~~ 635 (834)
|+|++. |+||| |.++ .+++||||||||++..|+ .+...+++|+ +|+|+||+. ++
T Consensus 329 p~~v~~--K~i~~-~~~~----~~~~qlE~~~~d~~~~~~--------~~~~~~V~R~-~F~PvKn~~-~l--------- 382 (488)
T 2i5k_A 329 EIIPNQ--KTITR-DGHE----INVLQLETACGAAIRHFD--------GAHGVVVPRS-RFLPVKTCS-DL--------- 382 (488)
T ss_dssp CCBCCE--ECCCC----------CEECCBCCGGGGGGGSS--------SCEEEEECGG-GCCBCCSHH-HH---------
T ss_pred cceecC--ccccC-CCCC----CceEEeeehhhhHHhhcc--------CceEEEeccc-ccccccCCc-cH---------
Confidence 999966 78898 6543 378999999999999985 2234566998 899999943 11
Q ss_pred CCCCChhhhHHHHHHHHHHHHHHCCcccCcccCCCcccccCCCeEEEeCCCccccHHHHhcccCC-CCCCCCcEEEEEec
Q 003283 636 SLHQTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDGPPYLILLHPALGLLWEVTRQKFKG-GSVSKGSELQIEVA 714 (834)
Q Consensus 636 ~~~~sp~ta~~dl~~~~~~~L~~aG~~v~~~~~~~~~~~~~P~~~I~L~P~~~~~~~~~~~k~~~-gsi~~~S~L~VeG~ 714 (834)
++..+..|...+|..+..+. .++.+| +|.|++. +.++++|++||++ ++|.++++|+|+|+
T Consensus 383 ------------l~~~~~~~~~~~g~~~~~~~----~~e~~P--~v~~~~~-~~~~~~~~~rf~~~p~i~~~~~l~v~Gd 443 (488)
T 2i5k_A 383 ------------LLVKSDLFRLEHGSLKLDPS----RFGPNP--LIKLGSH-FKKVSGFNARIPHIPKIVELDHLTITGN 443 (488)
T ss_dssp ------------HHHTSTTEEEETTEEEECTT----CCSSCC--EEEECGG-GSSHHHHHHHCSSCCBCTTEEEEEEESS
T ss_pred ------------HHHHHHHHHHhcCcEeecCC----cCCCCC--eEEECCc-ccchhhHHhhcCCCccccccceEEEEee
Confidence 11112233334565443221 156677 4999998 6689999999999 89999999999999
Q ss_pred eEEeeceEEEEEEEEEecCCCCCccccCCCccceecccccceEEE-eeeEEeeCcee
Q 003283 715 EFLWRNVQLDGSLIIVAENVMGSTRIADNGESILQYGYRCGRCKL-NNVKVLNKGID 770 (834)
Q Consensus 715 ~~f~~~v~ldGslvI~a~~~~g~~~~~~~g~~i~~~~~~~g~~~l-~~~~V~N~G~~ 770 (834)
++|++||+|+|+|+|.|.+ |. ++.| .|..+.|+|+.
T Consensus 444 v~fg~~v~l~G~v~i~a~~--~~------------------~~~ip~g~~l~n~~~~ 480 (488)
T 2i5k_A 444 VFLGKDVTLRGTVIIVCSD--GH------------------KIDIPNGSILENVVVT 480 (488)
T ss_dssp EEECTTCEEEEEEEEECCT--TC------------------CEEECTTCEEEEEEEE
T ss_pred eEEcCCcEEEEEEEEEcCC--CC------------------eEEeCCCCEEecceee
Confidence 9999999999999999984 33 4566 67788888765
No 9
>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250, UDP, putative UDP-glucose pyrophosphorylase; HET: UPG U5P; 1.64A {Arabidopsis thaliana} SCOP: b.81.1.4 c.68.1.5 PDB: 2icx_A* 1z90_A 2q4j_A
Probab=100.00 E-value=6.7e-69 Score=606.91 Aligned_cols=389 Identities=19% Similarity=0.200 Sum_probs=321.7
Q ss_pred cCCCCcccCCChHHH-HHHHHHhhhccCcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHH
Q 003283 261 HVPSGLDLSQNTEYA-AQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFL 339 (834)
Q Consensus 261 ~vP~g~~l~~~~~~~-~~~~~~Gle~L~kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~L 339 (834)
|+|++...++.+... ..+++.|+++++++++|+||||+|||||++.||+ |+||. +||||||+++++|++++
T Consensus 51 p~~~~~~~~~~~~~~~~~~~~~g~~~l~k~~vviLAGGlGTRLg~~~PK~--llpv~----~gkp~Le~~i~~l~~~~-- 122 (469)
T 2icy_A 51 TPTDEIVVPYEKMTPVSQDVAETKNLLDKLVVLKLNGGLGTTMGCTGPKS--VIEVR----DGLTFLDLIVIQIENLN-- 122 (469)
T ss_dssp CCCTTTEEEGGGSCCCCSCHHHHHHHHTTEEEEEEECCBSGGGTCCSBGG--GSEEE----TTEEHHHHHHHHHHHHH--
T ss_pred cCCcccccChhhcccchhhHHHHHHhhccceEEEEcCCccccCCCCCCcc--ccccC----CCCCHHHHHHHHHHHHH--
Confidence 566665444322111 1234679999999999999999999999999999 99994 79999999999999997
Q ss_pred hHhhcCCcccceEEEecCCCCCchHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCC---CCccccCCCC
Q 003283 340 YFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRP---FAPVCKPGGH 416 (834)
Q Consensus 340 a~k~~g~~~~IPl~IMTS~~~~Th~~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~---~~i~~~P~GH 416 (834)
+++| +.|||+||||+ .||+.|++||++|+|||+ +|++|+|+++||++ .+|+++++.+ +.++|+|+||
T Consensus 123 --~~~G--~~ip~vimts~--~t~e~t~~~f~~~~~fG~---~I~~f~Q~~~P~i~-~e~~~~l~~~~~~~~~e~~P~Gt 192 (469)
T 2icy_A 123 --NKYG--CKVPLVLMNSF--NTHDDTHKIVEKYTNSNV---DIHTFNQSKYPRVV-ADEFVPWPSKGKTDKEGWYPPGH 192 (469)
T ss_dssp --HHHS--CCCCEEEEECT--TTHHHHHHHHGGGTTSSS---CEEEEECCCEECEE-TTTTEEGGGGTCCSGGGEECCCG
T ss_pred --HhcC--CCccEEEEeCC--CCHHHHHHHHHhcccCCc---eEEEEEecceeeEc-cccCccccCCCCCccccCCcCCc
Confidence 5667 78999999999 799999999999999998 89999999999999 5789999755 7899999999
Q ss_pred cHHHHHHHhcCchHHHHHcCceEEEEEeCCCCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCC
Q 003283 417 GAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDG 496 (834)
Q Consensus 417 GdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dG 496 (834)
||+|++|+++|++++|.++|++|++|+|+||+.+..||.| +|++..+++++.+++ ++++.+++++|++|. .||
T Consensus 193 GG~~~~L~~sGll~~l~~~G~e~~~V~n~DnL~~~~d~~l---l~~~~~~~a~~t~~v-~~k~~~~~~~Gvl~~---~dg 265 (469)
T 2icy_A 193 GDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTI---LKHLIQNKNEYCMEV-TPKTLADVKGGTLIS---YEG 265 (469)
T ss_dssp GGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTCCCCHHH---HHHHHHHTCSEEEEE-EECCTTCCSSCEEEE---ETT
T ss_pred hHHHHHHHhcCcHHHHHhcCCCEEEEEECCcCCcccCHHH---HHHHHHcCCCeeEEE-EEeccCCCceeEEEE---ECC
Confidence 9999999999999999999999999999999766679955 899999999999996 677888999999997 688
Q ss_pred ccccceEEEEecccCccCCCCCCCCCCCccccCcc-ceeeeEEeHHHHHhhhcccccCCccccccccCCCcceecCCCCc
Q 003283 497 KWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDT 575 (834)
Q Consensus 497 k~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s~f~~-Ninnl~fsL~~L~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~ 575 (834)
+ +.++||+|+|++...+. .+. ..|+. |||||||++++|+++++. ....||.|+ ||| ++| |
T Consensus 266 ~----~~vvE~~e~p~~~~~e~--k~~---~~~~~~N~g~y~~~~~~L~~i~~~-~~~~lp~~v-~~K----~id--~-- 326 (469)
T 2icy_A 266 K----VQLLEIAQVPDEHVNEF--KSI---EKFKIFNTNNLWVNLKAIKKLVEA-DALKMEIIP-NPK----EVD--G-- 326 (469)
T ss_dssp E----EEEECGGGSCGGGHHHH--HSS---SSCCEEEEEEEEEEHHHHHHHHHT-TCCCCCCBC-CEE----EET--T--
T ss_pred E----EEEEEEeccChhhhhhh--ccc---cccceeeEEEEEEcHHHHHHHHhc-ccCCchhhc-cce----ecC--C--
Confidence 8 89999999998742110 011 23665 999999999999999986 567899887 666 556 3
Q ss_pred cccCcceeccchhhhhhhhccccccccccceeeecccceeeeeccCCCchhhhhccccCCCCCCChhhhHHHHHHHHHH-
Q 003283 576 HSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYD- 654 (834)
Q Consensus 576 ~~~~p~rLE~~Mqdi~~~F~~~y~~~~~~~~f~~~~R~~~FsPvKn~~~sa~k~~~~~~~~~~~sp~ta~~dl~~~~~~- 654 (834)
.+++|||++|||++..|+ .+...+++|. +|+||||.. |++..+++
T Consensus 327 --~~~~klE~~~~D~~~~~~--------~~~~~~V~R~-~F~PvKn~~-----------------------dll~~~s~l 372 (469)
T 2icy_A 327 --VKVLQLETAAGAAIRFFD--------NAIGVNVPRS-RFLPVKASS-----------------------DLLLVQSDL 372 (469)
T ss_dssp --EEEECCBCCGGGGGGGST--------TCEEEECCGG-GCCBCCSHH-----------------------HHHHHHSTT
T ss_pred --CceEeehHhhHHHHHhcC--------CeEEEEechh-HcCcCCCHH-----------------------HHHHHHHHH
Confidence 368999999999999985 2234468887 799999922 33444444
Q ss_pred HHHHCCcccCcccCCCcccccCCCeEEEeCCCccccHHHHhcccCC-CCCCCCcEEEEEeceEEeeceEEEEEEEEEecC
Q 003283 655 ILCQCHIKLPEIEGNDKYIDDGPPYLILLHPALGLLWEVTRQKFKG-GSVSKGSELQIEVAEFLWRNVQLDGSLIIVAEN 733 (834)
Q Consensus 655 ~L~~aG~~v~~~~~~~~~~~~~P~~~I~L~P~~~~~~~~~~~k~~~-gsi~~~S~L~VeG~~~f~~~v~ldGslvI~a~~ 733 (834)
|...+|.-+.. .....+..| +|.|+|. ++++++|++||++ +||.++++|+|+|+++|++||+|+|+|+|.|.+
T Consensus 373 ~~~~~g~~~~~---~~~~~~~~P--~v~l~~~-~~~v~~f~~rf~~~p~~~~~~~l~v~gdv~fg~~v~l~G~v~i~~~~ 446 (469)
T 2icy_A 373 YTLVDGFVTRN---KARTNPSNP--SIELGPE-FKKVATFLSRFKSIPSIVELDSLKVSGDVWFGSSIVLKGKVTVAAKS 446 (469)
T ss_dssp EEEETTEEEEC---TTCCSSSCC--EEEECGG-GCSHHHHHHTBSSCCBCTTEEEEEEESEEEECSSCEEEEEEEEECCT
T ss_pred HHHhcCcEEec---CcccCCCCC--eEEcChh-hhhHHHHHHhcCCCcccccCCeEEEEeeeEEcCCcEEEEEEEEEcCC
Confidence 44445554321 122355566 5999999 8899999999998 799999999999999999999999999999974
No 10
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Probab=98.32 E-value=3.8e-06 Score=95.17 Aligned_cols=191 Identities=15% Similarity=0.171 Sum_probs=129.6
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
.+|||+||||.||||...-||- ++|+ .||+++++.++.+..+ | .--++|.++. -.+..+
T Consensus 12 ~~~vvILAaG~GtRm~~~~pK~--l~pv-----~gkp~i~~~l~~~~~~--------g---~~~i~vv~~~---~~~~i~ 70 (501)
T 3st8_A 12 DTAVLVLAAGPGTRMRSDTPKV--LHTL-----AGRSMLSHVLHAIAKL--------A---PQRLIVVLGH---DHQRIA 70 (501)
T ss_dssp CEEEEEEECSCCGGGCCSSCGG--GCEE-----TTEEHHHHHHHHHHHH--------C---CSEEEEEECT---THHHHH
T ss_pred CceEEEECCcCcccCCCCCCHH--HeEE-----CChhHHHHHHHHHHhC--------C---CCEEEEEeCC---CHHHHH
Confidence 6899999999999999999999 9998 7999999999988665 3 2356788886 678899
Q ss_pred HHHHHh-CCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeC
Q 003283 368 SLCERL-RWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQV 445 (834)
Q Consensus 368 ~fle~n-~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~v~~v 445 (834)
++|.+. +.||. +|.+..|. .|-|=|+ |+.++ +.+.+.-...+.+.+.
T Consensus 71 ~~~~~~~~~~~~---~i~~~~q~----------------------~~lGTa~Av~~a~------~~l~~~~~~~~lvl~g 119 (501)
T 3st8_A 71 PLVGELADTLGR---TIDVALQD----------------------RPLGTGHAVLCGL------SALPDDYAGNVVVTSG 119 (501)
T ss_dssp HHHHHHHHHHTS---CCEEEECS----------------------SCCCHHHHHHHHH------TTSCTTCCSEEEEEET
T ss_pred HHHHHHHHhcCC---cEEEEEcC----------------------CCCCcHHHHHHHH------HHhccccccceeeecC
Confidence 999873 45554 56666663 2334443 22222 1222233467888888
Q ss_pred CCCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCc
Q 003283 446 SNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGL 525 (834)
Q Consensus 446 DN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l 525 (834)
|.++...|. +..++-++...+.++.+.+ .+...| .+-|++.. ..+|+ ...++|.-+.+++..
T Consensus 120 d~~l~~~~~-~~~l~~~h~~~~~~~ti~~-~~~~dp-~~yG~i~~--~~~g~---v~~ivEk~~~~~~~~---------- 181 (501)
T 3st8_A 120 DTPLLDADT-LADLIATHRAVSAAVTVLT-TTLDDP-FGYGRILR--TQDHE---VMAIVEQTDATPSQR---------- 181 (501)
T ss_dssp TCTTCCHHH-HHHHHHHHHHTTCSEEEEE-EECSCC-TTSCEEEE--CTTCC---EEEEECGGGCCHHHH----------
T ss_pred cceeecHHH-HHHHHHHHhhccccceEee-eccCCc-hhcccccc--cccee---EEeeccccCCChhhc----------
Confidence 888877643 3245666667777777765 444433 34567654 36776 356777766655521
Q ss_pred cccCccceeeeEEeHHHHHhhhcc
Q 003283 526 QADFPANTNILYVDLASAELVGSS 549 (834)
Q Consensus 526 ~s~f~~Ninnl~fsL~~L~~vl~~ 549 (834)
. ..-.|+..++|+-+.|++.+.+
T Consensus 182 ~-i~~in~Giy~f~~~~l~~~l~~ 204 (501)
T 3st8_A 182 E-IREVNAGVYAFDIAALRSALSR 204 (501)
T ss_dssp H-CCEEEEEEEEEEHHHHHHHHTT
T ss_pred c-ceeeeceeeeecchhHHHhhhh
Confidence 0 0124999999999999998764
No 11
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=97.77 E-value=0.00015 Score=74.88 Aligned_cols=189 Identities=10% Similarity=0.055 Sum_probs=111.6
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
++.+|+||||.||||+ +|- ++|+ .||+++++.++++... | + -.++|-|. ++.+.
T Consensus 2 ~~~aiIlA~G~stRlp---~K~--L~~i-----~GkPli~~~l~~l~~~--------~--~-~~ivVv~~-----~~~i~ 55 (252)
T 3oam_A 2 SFTVVIPARYQSTRLP---GKP--LADI-----GGKPMIQWVYEQAMQA--------G--A-DRVIIATD-----DERVE 55 (252)
T ss_dssp CEEEEEECCCCCSSST---TGG--GCEE-----TTEEHHHHHHHHHHHT--------T--C-SEEEEEES-----CHHHH
T ss_pred ceEEEEecCcCCCCCC---Ccc--eeeE-----CCEEHHHHHHHHHHhC--------C--C-CeEEEECC-----HHHHH
Confidence 5788999999999996 798 9888 7999999999987653 3 1 24566663 37788
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (834)
+++++ ||. ++.+-. ...|.|-|+++.++..-+ ..+-.++.+.+.|+
T Consensus 56 ~~~~~---~g~---~v~~~~----------------------~~~~~Gt~~~~~~~~~l~------~~~~d~vlv~~gD~ 101 (252)
T 3oam_A 56 QAVQA---FGG---VVCMTS----------------------PNHQSGTERLAEVVAKMA------IPADHIVVNVQGDE 101 (252)
T ss_dssp HHHHH---TTC---EEEECC----------------------TTCCSHHHHHHHHHHHTT------CCTTSEEEECCTTC
T ss_pred HHHHH---cCC---EEEEcC----------------------CCCCCcHHHHHHHHHhcC------cCCCCEEEEEeCCe
Confidence 88876 443 221100 123566677776654211 12568999999999
Q ss_pred CcccccHhHHHHhhhhhhcCCceeEEEeeecCCCC----cCceEEEEeecCCCccccceEEEEecc--cCccCCCCCCCC
Q 003283 448 VVAATDLTLLALAGIGLHHGKKLGFASCKRSSGAT----EGINVLIEKKNLDGKWAYGLSCIEYTE--FDKFGITRGPFS 521 (834)
Q Consensus 448 ~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~----ekvGvL~~~~~~dGk~~~~~~vVEYsE--l~~~~~~~~~~~ 521 (834)
++...+ .+-.++..+...+.++.+.+ .+-..+. ..+|+++. ..+|+ ++.+++ ++.. ++....
T Consensus 102 Pli~~~-~i~~l~~~~~~~~~~~~~~~-~~v~~~~~~~~p~~g~vv~--d~~g~------v~~fsr~~i~~~--~~~~~~ 169 (252)
T 3oam_A 102 PLIPPA-IIRQVADNLAACSAPMATLA-VEIEDEAEVFNPNAVKVIT--DKSGY------ALYFSRATIPWD--RDNFAK 169 (252)
T ss_dssp TTCCHH-HHHHHHHHHHHSSCSEEEEE-EEECCHHHHTCTTSCEEEE--CTTSB------EEEEESSCSSCC--HHHHHS
T ss_pred eecCHH-HHHHHHHHHHhcCCCEEEEe-eecCCHHHhhCCCceEEEE--CCCCe------EEEEeCCCCCCC--CCcccc
Confidence 987652 12233455545556666665 3322222 12355554 25665 445555 2221 100000
Q ss_pred CCC-ccccCccceeeeEEeHHHHHhhhc
Q 003283 522 SNG-LQADFPANTNILYVDLASAELVGS 548 (834)
Q Consensus 522 dg~-l~s~f~~Ninnl~fsL~~L~~vl~ 548 (834)
.-. .-..+-.|+..+.|+-++|++...
T Consensus 170 ~~~~~~~~~~~n~GiY~~~~~~l~~~~~ 197 (252)
T 3oam_A 170 ADKAIVQPLLRHIGIYAYRAGFINTYLD 197 (252)
T ss_dssp SSCCCCSCEEEEEEEEEEETTHHHHHHH
T ss_pred ccccccccceEEEEEEEcCHHHHHHHHc
Confidence 000 001133499999999999988764
No 12
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}
Probab=97.56 E-value=0.0021 Score=70.80 Aligned_cols=203 Identities=11% Similarity=0.053 Sum_probs=114.1
Q ss_pred CcEEEEEecCCccccCC---CCCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCc
Q 003283 287 PELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN 362 (834)
Q Consensus 287 ~kvavVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~T 362 (834)
.++..|+||||.||||+ ...||- ++|+ .|+ +++++.++++... | .-.++|.|.. .
T Consensus 11 ~~~~avILAaG~gtRl~plT~~~pK~--llpi-----~gk~pli~~~l~~l~~~--------g---i~~i~vv~~~---~ 69 (420)
T 3brk_X 11 RDAMAYVLAGGRGSRLKELTDRRAKP--AVYF-----GGKARIIDFALSNALNS--------G---IRRIGVATQY---K 69 (420)
T ss_dssp GGEEEEEEECCCCGGGGGGGSSSCGG--GSEE-----TTTEETHHHHHHHHHHT--------T---CCEEEEEECT---T
T ss_pred hceEEEEEcCCCCCccchhhcCCccc--cccc-----CCCCcHHHHHHHHHHhC--------C---CCeEEEEeCC---C
Confidence 35778999999999999 778999 9998 789 9999999888652 3 1246788876 5
Q ss_pred hHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccC---CCCcHHHHHHHhcCchHHHHHcCceE
Q 003283 363 HERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKP---GGHGAIWKLAHDKGIFKWFHDNGRKG 439 (834)
Q Consensus 363 h~~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P---~GHGdIy~aL~~sGlLd~l~~~Giky 439 (834)
++...+++.+. ||+... +.+..++.+.... -...| -|-++ +++. .++.+...+-++
T Consensus 70 ~~~i~~~~~~~--~~~~~~----~~~~~v~i~~~~~----------~~~~~~~~~Gt~~---al~~--a~~~l~~~~~~~ 128 (420)
T 3brk_X 70 AHSLIRHLQRG--WDFFRP----ERNESFDILPASQ----------RVSETQWYEGTAD---AVYQ--NIDIIEPYAPEY 128 (420)
T ss_dssp CHHHHHHHHHH--SCCCCG----GGTCEEEEECCC-----------------CCCCHHH---HHHT--THHHHHHHCCSE
T ss_pred hHHHHHHHhhh--hccccc----cccCCEEEeCccc----------cccCCccccCCHH---HHHH--HHHHHHhcCCCE
Confidence 68888888874 454210 0111122221000 00012 23322 2221 134444445678
Q ss_pred EEEEeCCCCcccccHhHHHHhhhhhhcCCceeEEEeeecC-CCCcCceEEEEeecCCCccccceEEEEecccCccCCCCC
Q 003283 440 ATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRG 518 (834)
Q Consensus 440 i~v~~vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~-~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~ 518 (834)
+.|.+.|.+ ...| +-.++..+...++++.+.+ .+.+ .....-|++.. ..+|+ ++++.|-|... ..
T Consensus 129 ~lv~~~D~~-~~~~--l~~l~~~~~~~~~~~tl~~-~~~~~~~~~~~g~v~~--d~~g~------v~~~~ekp~~~--~~ 194 (420)
T 3brk_X 129 MVILAGDHI-YKMD--YEYMLQQHVDSGADVTIGC-LEVPRMEATGFGVMHV--NEKDE------IIDFIEKPADP--PG 194 (420)
T ss_dssp EEEEESSCE-ECBC--THHHHHHHHHTTCSEEEEE-EEEETTGGGGSEEEEE--CTTSB------EEEEEESCSSC--CC
T ss_pred EEEecccEE-EchH--HHHHHHHHHHcCCeEEEEE-eecCccccCcccEEEE--CCCCc------EEEeEeCCCcc--cc
Confidence 999999994 3333 3344566656666665554 3322 12235677754 23555 33444422221 00
Q ss_pred CCCCCCccccCccceeeeEEeHHHHHhhhc
Q 003283 519 PFSSNGLQADFPANTNILYVDLASAELVGS 548 (834)
Q Consensus 519 ~~~dg~l~s~f~~Ninnl~fsL~~L~~vl~ 548 (834)
.. +.. ..+-.|+..++|+-+.+.+.++
T Consensus 195 ~~-~~~--~~~~~~~Giy~~~~~~l~~~l~ 221 (420)
T 3brk_X 195 IP-GNE--GFALASMGIYVFHTKFLMEAVR 221 (420)
T ss_dssp BT-TBT--TEEEEEEEEEEEEHHHHHHHHT
T ss_pred cc-ccc--cceEEeeeeEEEeHHHHHHHHH
Confidence 00 000 1134599999999998877664
No 13
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*
Probab=97.55 E-value=0.00097 Score=69.21 Aligned_cols=178 Identities=20% Similarity=0.150 Sum_probs=107.3
Q ss_pred cEEEEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchH
Q 003283 288 ELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~ 364 (834)
++..|+||||.||||+- ..||. ++|+ .|+++++..++++... | .-.++|.|.. ...+
T Consensus 24 ~m~aiIlAaG~g~Rl~~lt~~~pK~--ll~i-----~g~pli~~~l~~l~~~--------g---~~~iivv~~~--~~~~ 83 (269)
T 4ecm_A 24 AMKGIILAGGTGSRLYPITKVTNKH--LLPV-----GRYPMIYHAVYKLKQC--------D---ITDIMIITGK--EHMG 83 (269)
T ss_dssp CEEEEEECCSCCGGGTTTTSSSCGG--GSEE-----TTEEHHHHHHHHHHHT--------T---CCEEEEEECT--TTHH
T ss_pred CcEEEEECCCCccccccccCCCCce--ecEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEECCh--hhHH
Confidence 57789999999999987 88999 9998 7999999999988652 3 2356777776 3457
Q ss_pred HHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEe
Q 003283 365 RITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQ 444 (834)
Q Consensus 365 ~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~ 444 (834)
...+++.....+|+ ++.+..| ..+.|-|+- ++. .++.+ +-+++.|.+
T Consensus 84 ~~~~~~~~~~~~~~---~i~~~~~----------------------~~~~G~~~a---l~~--a~~~~---~~~~~lv~~ 130 (269)
T 4ecm_A 84 DVVSFLGSGQEFGV---SFTYRVQ----------------------DKAGGIAQA---LGL--CEDFV---GNDRMVVIL 130 (269)
T ss_dssp HHHHHHTTSGGGTC---EEEEEEC----------------------SSCCCHHHH---HHT--THHHH---TTSEEEEEE
T ss_pred HHHHHHhhccccCc---eEEEeeC----------------------CccCcHHHH---HHH--HHHhc---CCCcEEEEe
Confidence 77888876545554 2222111 113343322 211 12222 147899999
Q ss_pred CCCCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCC
Q 003283 445 VSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNG 524 (834)
Q Consensus 445 vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~ 524 (834)
.|.+.. . .+-.++..+...+.++.+.+ .+... ...-|++.. .+|+ ++++.|=|.. . .
T Consensus 131 ~D~~~~-~--~l~~l~~~~~~~~~~~~~~~-~~~~~-~~~~g~v~~---d~g~------v~~~~ekp~~-------~-~- 187 (269)
T 4ecm_A 131 GDNIFS-D--DIRPYVEEFTNQKEGAKVLL-QSVDD-PERFGVANI---QNRK------IIEIEEKPKE-------P-K- 187 (269)
T ss_dssp TTEEES-S--CSHHHHHHHHTSSSSEEEEE-EECSC-GGGSEEEEE---ETTE------EEEEEESCSS-------C-S-
T ss_pred CCccCc-c--CHHHHHHHHHhcCCCeEEEE-EECCC-CCCceEEEE---cCCE------EEEEEECCCC-------C-C-
Confidence 999764 3 23244556555666665554 33222 345677764 3565 3333332211 0 0
Q ss_pred ccccCccceeeeEEeHHHHH
Q 003283 525 LQADFPANTNILYVDLASAE 544 (834)
Q Consensus 525 l~s~f~~Ninnl~fsL~~L~ 544 (834)
.+..|+..++|+-+.++
T Consensus 188 ---~~~~~~Giy~~~~~~l~ 204 (269)
T 4ecm_A 188 ---SSYAVTGIYLYDSKVFS 204 (269)
T ss_dssp ---CSEEEEEEEEECTTHHH
T ss_pred ---CcEEEEEEEEECHHHHH
Confidence 14459999999987763
No 14
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=97.48 E-value=0.0035 Score=65.57 Aligned_cols=190 Identities=15% Similarity=0.099 Sum_probs=104.8
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
++.+|+||||.||||| +|- ++|+ .||+++++.+++++.. | + -.++|-|. ++.+.
T Consensus 9 ~~~aIIlA~G~stRl~---~K~--L~~i-----~GkPli~~~l~~l~~~--------~--i-~~VvVvt~-----~~~i~ 62 (256)
T 3tqd_A 9 EFRVIIPARFDSTRLP---GKA--LVDI-----AGKPMIQHVYESAIKS--------G--A-EEVVIATD-----DKRIR 62 (256)
T ss_dssp CCEEEEECCCC---CT---TGG--GCEE-----TTEEHHHHHHHHHHHT--------T--C-SEEEEEES-----CHHHH
T ss_pred CceEEEEcCCCCCCCC---CCC--eeeE-----CCchHHHHHHHHHHhC--------C--C-CEEEEECC-----HHHHH
Confidence 5788999999999998 898 9888 7999999999987652 2 1 13455553 26777
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (834)
+++++ ||. ++. +. . .-.|.|-+.++.++.. +...+.+++.+.+.|+
T Consensus 63 ~~~~~---~g~---~v~---------~~-~------------~~~~~Gt~~i~~a~~~------l~~~~~d~vlv~~gD~ 108 (256)
T 3tqd_A 63 QVAED---FGA---VVC---------MT-S------------SDHQSGTERIAEAAVA------LGFEDDEIIVCLQGDE 108 (256)
T ss_dssp HHHHH---TTC---EEE---------EC-C------------TTCCSHHHHHHHHHHH------TTCCTTCEEEEECTTC
T ss_pred HHHHH---cCC---eEE---------Ee-C------------CCCCCcHHHHHHHHHH------hCcCCCCEEEEEeCCc
Confidence 88875 443 121 11 0 1135566667766532 2113578999999999
Q ss_pred CcccccHhHHHHhhhhhhc-CCceeEEEeeecCC----CCc-CceEEEEeecCCCccccceEEEEecccCccCCCCCCCC
Q 003283 448 VVAATDLTLLALAGIGLHH-GKKLGFASCKRSSG----ATE-GINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFS 521 (834)
Q Consensus 448 ~La~vDP~~l~flG~~~~~-~~~~~~~~vvRK~~----~~e-kvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~ 521 (834)
++...+ .+-.++..+... +.++...+ .+-.. .+. -++|++. .+|+ ++.+++=+-....+....
T Consensus 109 Pli~~~-~i~~li~~~~~~~~~~~a~l~-~~v~~~~~~~~p~~vkvv~d---~~g~------~l~fsr~pip~~r~~~~~ 177 (256)
T 3tqd_A 109 PLIPPD-AIRKLAEDLDEHDNVKVASLC-TPITEVDELFNPHSTKVVLN---RRNY------ALYFSHAPIPWGRDTFSD 177 (256)
T ss_dssp CCCCHH-HHHHHHHHHHHCC--CEEEEE-EECCCHHHHTCTTSCEEEEC---TTSB------EEEEESSCSSCCTTTTTC
T ss_pred ccCCHH-HHHHHHHHHHhCCCCCEEEEe-eEcCCHHHhhCCCccEEEEC---CCCE------EeEEecCCCCCCCccccc
Confidence 997642 111223443332 33444443 32111 111 2567654 6776 344555332110110000
Q ss_pred CCC--ccccCccceeeeEEeHHHHHhhhc
Q 003283 522 SNG--LQADFPANTNILYVDLASAELVGS 548 (834)
Q Consensus 522 dg~--l~s~f~~Ninnl~fsL~~L~~vl~ 548 (834)
... ....|-.|+..+.|+-++|++...
T Consensus 178 ~~~~~~~~~~~~~~GiY~y~~~~l~~~~~ 206 (256)
T 3tqd_A 178 KENLQLNGSHYRHVGIYAYRVGFLEEYLS 206 (256)
T ss_dssp GGGCCCSSCCEEEEEEEEEEHHHHHHHHH
T ss_pred ccccccCCcceEEEEEEEcCHHHHHHHHh
Confidence 000 001244599999999999988764
No 15
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*
Probab=97.32 E-value=0.0039 Score=69.18 Aligned_cols=211 Identities=12% Similarity=0.100 Sum_probs=107.9
Q ss_pred cEEEEEecCCccccCC---CCCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCch
Q 003283 288 ELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 363 (834)
Q Consensus 288 kvavVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th 363 (834)
++..|+||||.||||+ ...||. ++|+ .|+ +++++.++++.+. | .-.++|.|.. .+
T Consensus 20 ~~~avILAaG~gtRl~plT~~~pK~--llpi-----~g~~pli~~~l~~l~~~--------g---~~~i~vv~~~---~~ 78 (451)
T 1yp2_A 20 SVLGIILGGGAGTRLYPLTKKRAKP--AVPL-----GANYRLIDIPVSNCLNS--------N---ISKIYVLTQF---NS 78 (451)
T ss_dssp HEEEEEC------CCTTTTTTSCGG--GCEE-----TTTEETTHHHHHHHHHT--------T---CCEEEEEESC---CC
T ss_pred ceEEEEECCCCCCcccchhcCCcce--eeEE-----CCcceeHHHHHHHHHHC--------C---CCEEEEEecc---CH
Confidence 4678999999999999 678999 9998 688 9999999887653 3 2257888876 56
Q ss_pred HHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEE
Q 003283 364 ERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATV 442 (834)
Q Consensus 364 ~~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~v 442 (834)
+...++|.+. | |.+-. .++.++.+..+.... .+. -...+-|-|+ ++.+ ++.+...+-+++.|
T Consensus 79 ~~i~~~~~~~-~-~~~~~--~~~~~~~v~i~~~~~------~~~-~~~~~~Gt~~al~~a------~~~~~~~~~~~~lv 141 (451)
T 1yp2_A 79 ASLNRHLSRA-Y-ASNMG--GYKNEGFVEVLAAQQ------SPE-NPDWFQGTADAVRQY------LWLFEEHTVLEYLI 141 (451)
T ss_dssp HHHHHHHHHH-C-C----------CCEEEEEESCS------STT-SCCCCCSHHHHHHHT------HHHHTTSCCSEEEE
T ss_pred HHHHHHHhhh-h-hcccc--cccccCcEEEecccc------ccc-ccccccCcHHHHHHH------HHHHHhcCCCeEEE
Confidence 7888888753 2 21000 011233233332110 000 0011234433 2322 23333335689999
Q ss_pred EeCCCCcccccHhHHHHhhhhhhcCCceeEEEeeecC-CCCcCceEEEEeecCCCccccceEEEEecccCccCCCC-CCC
Q 003283 443 RQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITR-GPF 520 (834)
Q Consensus 443 ~~vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~-~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~-~~~ 520 (834)
.+.|.+ ...| |-.++..+...++++.+.+ .+.. ....+-|++.. ..+|+ ++++.|=|....+. -+.
T Consensus 142 ~~~D~~-~~~~--l~~l~~~~~~~~~~~tl~~-~~~~~~~~~~~g~v~~--d~~~~------v~~~~ekp~~~~~~~~~~ 209 (451)
T 1yp2_A 142 LAGDHL-YRMD--YEKFIQAHRETDADITVAA-LPMDEKRATAFGLMKI--DEEGR------IIEFAEKPQGEQLQAMKV 209 (451)
T ss_dssp ECSCEE-CCCC--HHHHHHHHHHTTCSEEEEE-EEECHHHHTTSEEEEE--CTTSB------EEEEEESCCHHHHHHTCC
T ss_pred ecCcEE-EcCC--HHHHHHHHHHcCCcEEEEE-EEcChhhcccCCEEEE--CCCCC------EEEEEECCCchhhccccc
Confidence 999993 3333 3345666666666665543 2221 11234677654 23454 44444433321000 000
Q ss_pred CCCCcc---------ccCccceeeeEEeHHHHHhhhcc
Q 003283 521 SSNGLQ---------ADFPANTNILYVDLASAELVGSS 549 (834)
Q Consensus 521 ~dg~l~---------s~f~~Ninnl~fsL~~L~~vl~~ 549 (834)
+-+++ ..+..|+..++|+-+.+.+.++.
T Consensus 210 -~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~ 246 (451)
T 1yp2_A 210 -DTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRD 246 (451)
T ss_dssp -CGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHT
T ss_pred -cccccccccccccCCcceEEeeEEEEcHHHHHHHHHh
Confidence 00000 11334999999999988777653
No 16
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=97.30 E-value=0.0023 Score=67.20 Aligned_cols=190 Identities=9% Similarity=0.060 Sum_probs=110.8
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
++.+|+||||.||||+ .|- ++|+ .||+++++.++++... | + -.++|-|.. +.+.
T Consensus 18 ~~~aIIlA~G~stRlp---~K~--L~~i-----~GkPmi~~~l~~l~~~--------~--i-~~IvV~t~~-----~~i~ 71 (264)
T 3k8d_A 18 SFVVIIPARYASTRLP---GKP--LVDI-----NGKPMIVHVLERARES--------G--A-ERIIVATDH-----EDVA 71 (264)
T ss_dssp CCEEEEECCSCCSSST---TGG--GCEE-----TTEEHHHHHHHHHHHT--------T--C-SEEEEEESC-----HHHH
T ss_pred ceEEEEEcCCCCCCCC---Ccc--eeeE-----CCeEHHHHHHHHHHhC--------C--C-CEEEEECCH-----HHHH
Confidence 5788999999999996 588 8888 8999999999887653 2 1 245666632 5677
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (834)
+++++ ||. .+. +. . ...|.|-|.+..++.. +...+.+++.+.+.|+
T Consensus 72 ~~~~~---~g~---~v~---------~~-~------------~~~~~Gt~~i~~~~~~------l~~~~~d~vlv~~gD~ 117 (264)
T 3k8d_A 72 RAVEA---AGG---EVC---------MT-R------------ADHQSGTERLAEVVEK------CAFSDDTVIVNVQGDE 117 (264)
T ss_dssp HHHHH---TTC---EEE---------EC-C------------TTCCSHHHHHHHHHHH------HTCCTTCEEEEECTTC
T ss_pred HHHHH---cCC---EEE---------Ee-c------------CCCCCCHHHHHHHHHH------hccCCCCEEEEEcCCc
Confidence 77775 343 111 10 0 1134566666666532 2123568999999999
Q ss_pred CcccccHhHHHHhhhhhhcCCceeEEEeeecCCCC----c-CceEEEEeecCCCccccceEEEEecccCccCCCCCC-CC
Q 003283 448 VVAATDLTLLALAGIGLHHGKKLGFASCKRSSGAT----E-GINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGP-FS 521 (834)
Q Consensus 448 ~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~----e-kvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~-~~ 521 (834)
++...+ .+-.++......++++.+.+ .+-..+. - -+++++. .+|+ ++.+++=+.-...+.. ..
T Consensus 118 Pli~~~-~i~~li~~~~~~~~~~~~~~-~~v~d~~~~~~p~~vkVv~d---~~g~------~l~fsr~~ip~~r~~~~~~ 186 (264)
T 3k8d_A 118 PMIPAT-IIRQVADNLAQRQVGMATLA-VPIHNAEEAFNPNAVKVVLD---AEGY------ALYFSRATIPWDRDRFAEG 186 (264)
T ss_dssp TTCCHH-HHHHHHHHHHTSSCSEEEEE-EECCSHHHHTCTTSCEEEEC---TTSB------EEEEESSCCSCCHHHHHHC
T ss_pred ccCCHH-HHHHHHHHHhhcCCCEEEEE-EEcCCHHHccCCCceEEEEC---CCCe------EEEEecCCCCCCCcccccc
Confidence 997752 12233445445556666665 3222211 1 2456543 6776 4555554321101000 00
Q ss_pred CCCccccCccceeeeEEeHHHHHhhhc
Q 003283 522 SNGLQADFPANTNILYVDLASAELVGS 548 (834)
Q Consensus 522 dg~l~s~f~~Ninnl~fsL~~L~~vl~ 548 (834)
..+.-..|..|+....|+-+++++...
T Consensus 187 ~~~~~~~~~~~~GiY~y~~~~l~~~~~ 213 (264)
T 3k8d_A 187 LETVGDNFLRHLGIYGYRAGFIRRYVN 213 (264)
T ss_dssp SSCCCSCCEEECSEEEEEHHHHHHHHH
T ss_pred ccccCCcceEEEEEEEECHHHHHHHHh
Confidence 000111255699999999999988764
No 17
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Probab=97.25 E-value=0.0031 Score=69.59 Aligned_cols=181 Identities=15% Similarity=0.130 Sum_probs=105.4
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
++..|+||||.|||||-+.||. ++|+ .|++++++.++++... | .-.++|.|.. .++...
T Consensus 8 ~~~aiIlA~G~g~Rl~~~~pK~--l~~i-----~g~pli~~~l~~l~~~--------~---~~~i~vv~~~---~~~~i~ 66 (459)
T 4fce_A 8 SMSVVILAAGKGTRMYSDLPKV--LHPL-----AGKPMVQHVIDAAMKL--------G---AQHVHLVYGH---GGELLK 66 (459)
T ss_dssp CEEEEEEECCCCGGGCCSSCGG--GSEE-----TTEEHHHHHHHHHHHH--------T---CSCEEEEESS---CHHHHH
T ss_pred cceEEEECCCCCccCCCCCCcc--cCee-----CCeeHHHHHHHHHHhC--------C---CCcEEEEeCC---CHHHHH
Confidence 6889999999999999888999 9998 7999999999988664 2 2257788886 467777
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCC-cHHHHHHHhcCchHHHHHcCceEEEEEeCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGH-GAIWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GH-GdIy~aL~~sGlLd~l~~~Gikyi~v~~vD 446 (834)
+++++. .+.+..|. .+.|- +.++.+|.. + .+-+++.+.+.|
T Consensus 67 ~~~~~~--------~~~~v~~~----------------------~~~g~~~~i~~~~~~---~-----~~~~~~lv~~~D 108 (459)
T 4fce_A 67 KTLADP--------SLNWVLQA----------------------EQLGTGHAMQQAAPH---F-----ADDEDILMLYGD 108 (459)
T ss_dssp HHC-------------CEEECS----------------------SCCCHHHHHHHHGGG---S-----CTTSEEEEEETT
T ss_pred HHhccC--------CcEEEeCC----------------------CCCCcHHHHHHHHHh---c-----CCCCcEEEEeCC
Confidence 776642 11111110 12232 234444432 1 135799999999
Q ss_pred CCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcc
Q 003283 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (834)
Q Consensus 447 N~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (834)
.++...+ .+-.++-.. ...+..+.+ .+... ..+-|++.. .+|+ +.++.|=++.. . ....
T Consensus 109 ~P~i~~~-~i~~l~~~~--~~~~~~~~~-~~~~~-~~~~g~v~~---~~g~------v~~~~ek~~~~-~------~~~~ 167 (459)
T 4fce_A 109 VPLISVD-TLQRLLAAK--PEGGIGLLT-VKLDN-PSGYGRIVR---ENGD------VVGIVEHKDAS-D------AQRE 167 (459)
T ss_dssp CTTCCHH-HHHHHHHHC--CTTSEEEEE-EECSC-CTTSCEEEE---ETTE------EEEEECGGGCC-T------TGGG
T ss_pred cccCCHH-HHHHHHHHH--hhCCEEEEE-EecCC-CCcccEEEe---CCCc------EEEEEECCCCC-h------HHhh
Confidence 9887642 121223332 233444433 33232 234566654 3565 33333322221 0 0000
Q ss_pred ccCccceeeeEEeHHHHHhhhcc
Q 003283 527 ADFPANTNILYVDLASAELVGSS 549 (834)
Q Consensus 527 s~f~~Ninnl~fsL~~L~~vl~~ 549 (834)
.+..|+..++|+-+.+.+.++.
T Consensus 168 -~~~~~~Giy~~~~~~l~~~l~~ 189 (459)
T 4fce_A 168 -INEINTGILVANGRDLKRWLSL 189 (459)
T ss_dssp -CCEEEEEEEEEEHHHHHHHHHT
T ss_pred -ccEEEEEEEEEEHHHHHHHHHH
Confidence 1334999999999998887653
No 18
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*
Probab=97.21 E-value=0.003 Score=65.64 Aligned_cols=64 Identities=17% Similarity=0.277 Sum_probs=51.0
Q ss_pred EEEEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHH
Q 003283 289 LGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 365 (834)
Q Consensus 289 vavVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~ 365 (834)
+.+|+||||.||||+- ..||- ++|+ .|++++++.++++... | .-.++|.|+. ..+.
T Consensus 3 ~~avIlAaG~gtRl~plt~~~pK~--ll~i-----~gkpli~~~l~~l~~~--------g---i~~i~vv~~~---~~~~ 61 (281)
T 3juk_A 3 KKCLFPAAGYGTRFLPITKTIPKE--MLPI-----VDKPLIQYAVEEAMEA--------G---CEVMAIVTGR---NKRS 61 (281)
T ss_dssp CEEEEECCSCCGGGTTGGGTSCGG--GCBS-----SSSBHHHHHHHHHHHH--------T---CCEEEEEECT---THHH
T ss_pred eEEEEECCcCCcccCccccCCCcc--cceE-----CCEEHHHHHHHHHHhC--------C---CCEEEEEecC---CHHH
Confidence 3568899999999987 88999 9888 7999999999998663 3 2356778876 6678
Q ss_pred HHHHHHHh
Q 003283 366 ITSLCERL 373 (834)
Q Consensus 366 T~~fle~n 373 (834)
+.++|.+.
T Consensus 62 i~~~~~~~ 69 (281)
T 3juk_A 62 LEDYFDTS 69 (281)
T ss_dssp HHHHTSCC
T ss_pred HHHHHhcc
Confidence 88887654
No 19
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...
Probab=97.21 E-value=0.0048 Score=65.37 Aligned_cols=181 Identities=18% Similarity=0.200 Sum_probs=102.7
Q ss_pred EEEEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHH
Q 003283 289 LGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 365 (834)
Q Consensus 289 vavVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~ 365 (834)
+..|+||||.||||| ...||- ++|+ .||+++++.++.+... | + -.++|.|+. ...+.
T Consensus 3 ~~aIILAgG~gtRl~plT~~~pK~--llpi-----~gkpli~~~l~~l~~~--------g--i-~~I~vv~~~--~~~~~ 62 (293)
T 1fxo_A 3 RKGIILAGGSGTRLHPATLAISKQ--LLPV-----YDKPMIYYPLSTLMLA--------G--I-REILIISTP--QDTPR 62 (293)
T ss_dssp EEEEEECCCCCTTTTTHHHHSCGG--GSEE-----TTEETTHHHHHHHHHT--------T--C-CEEEEEECT--TTHHH
T ss_pred ceEEEECCCCCCcCccccCCCCce--eCeE-----CCEeHHHHHHHHHHHC--------C--C-CEEEEEecc--ccHHH
Confidence 567888999999998 467898 9998 7899999999887542 3 1 235566655 35677
Q ss_pred HHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeC
Q 003283 366 ITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQV 445 (834)
Q Consensus 366 T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~v 445 (834)
..+++.+...||+ ++.+..|+ .|.|-++.+.... +.+ . + ..+.+...
T Consensus 63 i~~~l~~g~~~g~---~i~~~~~~----------------------~~~G~~~al~~a~-----~~i-~-~-~~~~lv~g 109 (293)
T 1fxo_A 63 FQQLLGDGSNWGL---DLQYAVQP----------------------SPDGLAQAFLIGE-----SFI-G-N-DLSALVLG 109 (293)
T ss_dssp HHHHHTTSGGGTC---EEEEEECS----------------------SCCCGGGHHHHTH-----HHH-T-T-SEEEEEET
T ss_pred HHHHHhcccccCc---eEEEeeCC----------------------CCCCHHHHHHHHH-----HHh-C-C-CCEEEEEC
Confidence 7788776443454 23221111 2556554333211 122 1 2 45555669
Q ss_pred CCCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCc
Q 003283 446 SNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGL 525 (834)
Q Consensus 446 DN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l 525 (834)
||++... .|-.++-.+...+.+..+.+ .+... .++-|++.. ..+|+ + +++.|-|.. . .
T Consensus 110 D~~~~~~--~l~~~l~~~~~~~~~~~v~~-~~v~d-p~~~g~v~~--d~~g~----v--~~~~ekp~~--------~-~- 167 (293)
T 1fxo_A 110 DNLYYGH--DFHELLGSASQRQTGASVFA-YHVLD-PERYGVVEF--DQGGK----A--ISLEEKPLE--------P-K- 167 (293)
T ss_dssp TEEEECT--THHHHHHHHHTCCSSEEEEE-EECSC-GGGSEEEEE--CTTSC----E--EEEEESCSS--------C-S-
T ss_pred ChhccCc--cHHHHHHHHHhcCCCcEEEE-EECCC-cccCcEEEE--CCCCc----E--EEEEECCCC--------C-C-
Confidence 9998653 23334454444444444432 33332 346777754 24565 2 233332211 0 0
Q ss_pred cccCccceeeeEEeHHHHHhh
Q 003283 526 QADFPANTNILYVDLASAELV 546 (834)
Q Consensus 526 ~s~f~~Ninnl~fsL~~L~~v 546 (834)
+ +..|+...+|+-+.++.+
T Consensus 168 -s-~~~~~Giy~~~~~~l~~~ 186 (293)
T 1fxo_A 168 -S-NYAVTGLYFYDQQVVDIA 186 (293)
T ss_dssp -S-SEEEEEEEEECTTHHHHH
T ss_pred -C-CeEEEEEEEEcHHHHHHH
Confidence 1 335999999998876543
No 20
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0
Probab=97.13 E-value=0.0021 Score=65.87 Aligned_cols=113 Identities=8% Similarity=0.092 Sum_probs=67.4
Q ss_pred cEEEEEecCCccccCCC-CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHH
Q 003283 288 ELGEIYPLGGSADRLGL-VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~-~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T 366 (834)
++..|+||||.|||||. +.||- ++|+ .|+++++..++++.+. + ..-.++|-|+. +-.+..
T Consensus 3 ~~~aIIlAaG~g~Rm~~~~~pK~--l~~l-----~Gkpll~~~l~~~~~~--------~--~~~~ivvv~~~--~~~~~~ 63 (246)
T 3f1c_A 3 LIYAQILAGGKGTRMGNVSMPKQ--FLPL-----NGKPIIVHTVEKFILN--------T--RFDKILISSPK--EWMNHA 63 (246)
T ss_dssp CEEEEEECC-----C-CSSCCGG--GSEE-----TTEEHHHHHHHHHHTC--------T--TCSEEEEEECG--GGHHHH
T ss_pred ccEEEEECCccccccCCCCCCCe--EEEE-----CCeeHHHHHHHHHHcC--------C--CCCEEEEEeCH--HHHHHH
Confidence 56889999999999998 77999 9888 7999999998887543 1 12356777776 333446
Q ss_pred HHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHH----cCceEEEE
Q 003283 367 TSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHD----NGRKGATV 442 (834)
Q Consensus 367 ~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~----~Gikyi~v 442 (834)
.+.++++.. + ..+.+ .++ ..+. .+.++.+| +.+.+ .+..++.|
T Consensus 64 ~~~~~~~~~---~-~~~~~-~~~-------~~~~---------------~~sv~~al------~~l~~~~~~~~~~~vlv 110 (246)
T 3f1c_A 64 EDNIKKYIS---D-DRIVV-IEG-------GEDR---------------NETIMNGI------RFVEKTYGLTDDDIIVT 110 (246)
T ss_dssp HHHHHHHCC---C-TTEEE-EEC-------CSSH---------------HHHHHHHH------HHHHHHTCCCTTCEEEE
T ss_pred HHHHHHhCC---C-CCEEE-ECC-------CCch---------------HHHHHHHH------HHHhhhhcCCCCCEEEE
Confidence 677776532 1 11211 110 0000 12455554 33433 24689999
Q ss_pred EeCCCCcccc
Q 003283 443 RQVSNVVAAT 452 (834)
Q Consensus 443 ~~vDN~La~v 452 (834)
.+.|.+++..
T Consensus 111 ~~~d~Pli~~ 120 (246)
T 3f1c_A 111 HDAVRPFLTH 120 (246)
T ss_dssp EETTCTTCCH
T ss_pred ecCcccCCCH
Confidence 9999999886
No 21
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=97.12 E-value=0.0016 Score=65.31 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=45.6
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
++.+|+||||.||||| ||- ++|+ .|+++++..++++.+. + ..-.++|-|.. +...
T Consensus 4 ~~~aiIlA~G~g~R~~---~K~--l~~i-----~gkpll~~~l~~~~~~--------~--~~~~ivvv~~~-----~~i~ 58 (228)
T 1ezi_A 4 QNIAVILARQNSKGLP---LKN--LRKM-----NGISLLGHTINAAISS--------K--CFDRIIVSTDG-----GLIA 58 (228)
T ss_dssp EEEEEEECCSSCSSST---TTT--TCEE-----TTEEHHHHHHHHHHHH--------C--CCSEEEEEESC-----HHHH
T ss_pred ceEEEEecCCCCCCCC---Ccc--ccee-----CCcCHHHHHHHHHHhC--------C--CCCEEEEECCC-----HHHH
Confidence 4778999999999999 999 9998 7999999999888664 2 11256666643 4456
Q ss_pred HHHHH
Q 003283 368 SLCER 372 (834)
Q Consensus 368 ~fle~ 372 (834)
+++++
T Consensus 59 ~~~~~ 63 (228)
T 1ezi_A 59 EEAKN 63 (228)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 67765
No 22
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}
Probab=97.11 E-value=0.0044 Score=65.79 Aligned_cols=193 Identities=10% Similarity=-0.032 Sum_probs=98.1
Q ss_pred cEEEEEecCCccccCC---C-CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCch
Q 003283 288 ELGEIYPLGGSADRLG---L-VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 363 (834)
Q Consensus 288 kvavVlLAGGlGTRLG---~-~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th 363 (834)
++..|+||||.||||+ . ..||- ++|+. .|+++++..++++... .-.++|.|.. ...
T Consensus 4 ~~~avIlAgG~gtRl~plt~~~~pK~--ll~i~----gg~pli~~~l~~l~~~------------~~~i~vv~~~--~~~ 63 (308)
T 2qh5_A 4 KIKNILLSGGSGKRLWPLSRSLYPKQ--FLKLF----DHKSLFELSFKRNASL------------VDETLIVCNE--KHY 63 (308)
T ss_dssp CEEEEEECC-------------CCGG--GCTTB----TTBCHHHHHHHHHHTT------------CSEEEEEEEG--GGH
T ss_pred ccEEEEEcCCCCccCCccCCCCCCCE--EEECC----CCCCHHHHHHHHHHcc------------CCCEEEEECh--hHH
Confidence 4667889999999996 2 57998 88883 5899999998887542 1256788876 334
Q ss_pred HHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHH-HHHHHhcCchHHHHHcCceEEEE
Q 003283 364 ERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAI-WKLAHDKGIFKWFHDNGRKGATV 442 (834)
Q Consensus 364 ~~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdI-y~aL~~sGlLd~l~~~Gikyi~v 442 (834)
+.+.+++++. ||++ ++.+..|+ .|.|-|+. +.++.. + ..-.++.|
T Consensus 64 ~~i~~~~~~~--~~~~--~~~~i~~~----------------------~~~gt~~al~~a~~~---l-----~~~~~~lv 109 (308)
T 2qh5_A 64 FLALEEIKNE--IKNK--SVGFLLES----------------------LSKNTANAIALSALM---S-----DKEDLLIV 109 (308)
T ss_dssp HHHHHHTTTT--CSSC--EEEEEEES----------------------SCCCHHHHHHHHHHT---S-----CTTSEEEE
T ss_pred HHHHHHHHHh--hCCC--ccEEEeCC----------------------CCCChHHHHHHHHHH---h-----CCCCeEEE
Confidence 6677777653 4531 22222221 13344443 333211 1 12347899
Q ss_pred EeCCCCcccccHhHHHHhhh---hhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCC
Q 003283 443 RQVSNVVAATDLTLLALAGI---GLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGP 519 (834)
Q Consensus 443 ~~vDN~La~vDP~~l~flG~---~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~ 519 (834)
.+.|.++...| .|-.++.. ....+..+.+.+ ....+..+-|++.. ..+|+ ...++| =|....+...
T Consensus 110 ~~~D~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~--~~~~~~~~~g~i~~--d~~~~---V~~~~E---kp~~~~~~~~ 178 (308)
T 2qh5_A 110 TPSDHLIKDLQ-AYENAIKKAIDLAQKGFLVTFGV--SIDKPNTEFGYIES--PNGLD---VKRFIE---KPSLDKAIEF 178 (308)
T ss_dssp EESSCBCCCHH-HHHHHHHHHHHHHHTTCEEEEEE--ECSSCCTTSEEEEC--SSSSB---CSEEEE---SCCHHHHHHH
T ss_pred EcCCccccCHH-HHHHHHHHHHHHHhcCCEEEEEE--ecCCCCCCceEEEE--CCCCE---EEEEEE---CCChHHHHHH
Confidence 99999875443 13333443 233444444432 33334456787753 12344 123334 2221100000
Q ss_pred CCCCCccccCccceeeeEEeHHHHHhhhcc
Q 003283 520 FSSNGLQADFPANTNILYVDLASAELVGSS 549 (834)
Q Consensus 520 ~~dg~l~s~f~~Ninnl~fsL~~L~~vl~~ 549 (834)
..+| .|..|+..++|+-+.+.+.+.+
T Consensus 179 ~~~g----~~~~n~Giy~~~~~~ll~~l~~ 204 (308)
T 2qh5_A 179 QKSG----GFYFNSGMFVFQAGVFLDELKK 204 (308)
T ss_dssp HHHC----CEEEEEEEEEEEHHHHHHHHHH
T ss_pred hhcC----CeEEEeEEEEEEHHHHHHHHHH
Confidence 0001 1446999999998887665543
No 23
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6
Probab=97.07 E-value=0.016 Score=61.43 Aligned_cols=181 Identities=16% Similarity=0.145 Sum_probs=100.4
Q ss_pred EEEEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHH
Q 003283 289 LGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 365 (834)
Q Consensus 289 vavVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~ 365 (834)
+..|+||||.||||+ ...||- ++|+ .||+++++.++.+... | + -.++|.|+. ...+.
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~--llpi-----~gkpli~~~l~~l~~~--------g--i-~~Iivv~~~--~~~~~ 63 (295)
T 1lvw_A 4 MKGIVLAGGSGTRLYPITRAVSKQ--LLPI-----YDKPMIYYPLSVLMLA--------G--I-RDILIISTP--RDLPL 63 (295)
T ss_dssp CEEEEECCCCCSTTTTTTTSSCGG--GSEE-----TTEETTHHHHHHHHHT--------T--C-CEEEEEECT--TTHHH
T ss_pred eEEEEECCCCCCccccccCCCCce--ecEE-----CCeeHHHHHHHHHHHC--------C--C-CeEEEEecc--chHHH
Confidence 456889999999999 567998 9998 7899999999887642 3 1 245666664 35667
Q ss_pred HHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeC
Q 003283 366 ITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQV 445 (834)
Q Consensus 366 T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~v 445 (834)
..+++.+...+|+ ++.+..|+ .|.|-++.+.... +.+ . +-.++.+. .
T Consensus 64 i~~~l~~g~~~g~---~i~~~~~~----------------------~~~G~~~al~~a~-----~~i-~-~~~~~lv~-g 110 (295)
T 1lvw_A 64 YRDLLGDGSQFGV---RFSYRVQE----------------------EPRGIADAFIVGK-----DFI-G-DSKVALVL-G 110 (295)
T ss_dssp HHHHHTTSGGGTS---EEEEEECS----------------------SCCCGGGHHHHTH-----HHH-T-TSCEEEEE-T
T ss_pred HHHHhhhccccCc---eEEEeeCC----------------------CCCChHHHHHHHH-----HHh-C-CCcEEEEE-C
Confidence 7777765444454 23222111 2445554332211 122 1 22345554 8
Q ss_pred CCCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCc
Q 003283 446 SNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGL 525 (834)
Q Consensus 446 DN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l 525 (834)
||++... .|-.++-.+...+.+..+. +.+... .++-|++.. ..+|+ + +.+.|-|.. ..
T Consensus 111 D~~~~~~--~l~~~l~~~~~~~~~~~v~-~~~v~d-p~~~g~v~~--d~~g~----v--~~~~ekp~~--------~~-- 168 (295)
T 1lvw_A 111 DNVFYGH--RFSEILRRAASLEDGAVIF-GYYVRD-PRPFGVVEF--DSEGR----V--ISIEEKPSR--------PK-- 168 (295)
T ss_dssp TCCEECT--THHHHHHHHHTCCSSEEEE-EEECSC-CTTSEEEEE--CTTSB----E--EEEEESCSS--------CS--
T ss_pred CccccCc--CHHHHHHHHHHcCCCcEEE-EEECCC-cccCCEEEE--CCCCc----E--EEEEECCCC--------CC--
Confidence 9998653 3333444444344444433 233333 345677753 24565 2 233232211 00
Q ss_pred cccCccceeeeEEeHHHHHhh
Q 003283 526 QADFPANTNILYVDLASAELV 546 (834)
Q Consensus 526 ~s~f~~Ninnl~fsL~~L~~v 546 (834)
+ ...|+...+|+-+.++.+
T Consensus 169 -s-~~~~~Giy~f~~~~l~~~ 187 (295)
T 1lvw_A 169 -S-NYVVPGLYFYDNQVVEIA 187 (295)
T ss_dssp -C-SEECCSEEEECTTHHHHH
T ss_pred -C-CEEEEEeEEEcHHHHHHH
Confidence 1 235888889988776543
No 24
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=97.01 E-value=0.011 Score=61.70 Aligned_cols=187 Identities=12% Similarity=0.111 Sum_probs=102.6
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHH-HHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLI-RDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 289 vavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~-e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
..+|+||||.||||+ +|- ++|+ .||+++++.+ +++++. + .-.+++-|.+ +.+.
T Consensus 2 ~~aiIlA~G~stR~~---~K~--L~~i-----~GkPli~~~i~~~~~~~--------~---~~~vvVvt~~-----~~i~ 55 (253)
T 4fcu_A 2 KHIVIPARFSSSRLP---GKP--LLLI-----HDRPMILRVVDQAKKVE--------G---FDDLCVATDD-----ERIA 55 (253)
T ss_dssp EEEEEECCSCCTTST---TGG--GSEE-----TTEEHHHHHHHHHHTCT--------T---CCEEEEEESC-----HHHH
T ss_pred eEEEEEeCCCCCCCC---CCc--eeeE-----CCeEhHHHHHHHHHHhc--------C---CCEEEEECCH-----HHHH
Confidence 467899999999998 488 8888 8999999998 776431 2 1234555643 6677
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (834)
+++++ ||. ++.+ . .. ..+.|-+.++.++. .+...+..++.+.+.|+
T Consensus 56 ~~~~~---~g~---~v~~---------~-~~------------~~~~Gt~~i~~a~~------~~~~~~~d~vlv~~gD~ 101 (253)
T 4fcu_A 56 EICRA---EGV---DVVL---------T-SA------------DHPSGTDRLSEVAR------IKGWDADDIIVNVQGDE 101 (253)
T ss_dssp HHHHT---TTC---CEEE---------C-CT------------TCCCHHHHHHHHHH------HHTCCTTCEEEECCTTC
T ss_pred HHHHH---cCC---eEEE---------e-CC------------CCCChHHHHHHHHH------hcCcCCCCEEEEEeCCc
Confidence 77764 343 1210 0 00 01334444555543 23223568999999999
Q ss_pred CcccccHhHHHHhhhhhhc-CCceeEEEee-----ecCCCCcCceEEEEeecCCCccccceEEEEecc--cCccCCCCCC
Q 003283 448 VVAATDLTLLALAGIGLHH-GKKLGFASCK-----RSSGATEGINVLIEKKNLDGKWAYGLSCIEYTE--FDKFGITRGP 519 (834)
Q Consensus 448 ~La~vDP~~l~flG~~~~~-~~~~~~~~vv-----RK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsE--l~~~~~~~~~ 519 (834)
++...+ .+-.++..+... +..+...++. +-.+|.. +++++. .+|+ .. -+++ +|.. .+..
T Consensus 102 Pli~~~-~i~~li~~~~~~~~~~~at~~~~~~~~~~~~~p~~-~kvv~d---~~g~----~l--~fsr~~ip~~--r~~~ 168 (253)
T 4fcu_A 102 PLLPAQ-LVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSI-VKVVMS---KQNE----AL--YFSRATIPYD--RDGA 168 (253)
T ss_dssp TTCCHH-HHHHHHHHHHHCTTCSEEEEEEECCCHHHHHCTTS-CEEEEC---TTSB----EE--EEESSCCSCC--TTTS
T ss_pred ccCCHH-HHHHHHHHHHhCCCCCEEEEeEEcCCHHHccCCCc-cEEEEC---CCCe----EE--EecCCCCCCC--CCcc
Confidence 998752 121234444333 2233333222 1122332 566653 6776 32 3344 4322 1110
Q ss_pred CCCC-CccccCccceeeeEEeHHHHHhhhc
Q 003283 520 FSSN-GLQADFPANTNILYVDLASAELVGS 548 (834)
Q Consensus 520 ~~dg-~l~s~f~~Ninnl~fsL~~L~~vl~ 548 (834)
..+. ..-..|-.|+..+.|+-++|++...
T Consensus 169 ~~~~~~~~~~~~~~~GiY~f~~~~l~~~~~ 198 (253)
T 4fcu_A 169 KRDEPTLHTQAFRHLGLYAYRVSLLQEYVT 198 (253)
T ss_dssp SSSSCCCCSCCEEEEEEEEEEHHHHHHHTT
T ss_pred cccccccccceeEEEEEEEeCHHHHHHHHh
Confidence 0000 0001244499999999999998763
No 25
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=96.93 E-value=0.0057 Score=61.81 Aligned_cols=129 Identities=15% Similarity=0.135 Sum_probs=76.1
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
++..|+||||.||||+ +|- ++|+ .|++++++.++++++.. ..-.+++-|.. +.+.
T Consensus 3 ~~~aiIlA~G~s~R~~---~K~--l~~i-----~Gkpli~~~i~~~~~~~----------~~~~ivv~~~~-----~~i~ 57 (229)
T 1qwj_A 3 HLAALVLARGGSKGIP---LKN--IKRL-----AGVPLIGWVLRAALDAG----------VFQSVWVSTDH-----DEIE 57 (229)
T ss_dssp CEEEEEECCSCCSSSS---CTT--TSEE-----TTEEHHHHHHHHHHHHT----------CCSEEEEEESC-----HHHH
T ss_pred cEEEEEEcCCCCCCCC---Ccc--cceE-----CCEEHHHHHHHHHHhCC----------CcCEEEEECCh-----HHHH
Confidence 5778999999999997 588 8888 79999999999887642 11245565532 5567
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (834)
+++++ +|. .++.++. .+ ....+.|.+.+..+|..- .+.+++.+.+.|+
T Consensus 58 ~~~~~---~g~-----~~~~~~~---------~~-------~~~~~~~~~~v~~al~~~--------~~~d~vlv~~~D~ 105 (229)
T 1qwj_A 58 NVAKQ---FGA-----QVHRRSS---------ET-------SKDSSTSLDAIVEFLNYH--------NEVDIVGNIQATS 105 (229)
T ss_dssp HHHHH---TTC-----EEEECCG---------GG-------SSTTCCHHHHHHHHHTTC--------TTCSEEEEECTTC
T ss_pred HHHHH---cCC-----EEEeChh---------hh-------cCCCCcHHHHHHHHHHhc--------CCCCEEEEecCCC
Confidence 77765 232 1222210 00 001122333455555321 2568999999999
Q ss_pred CcccccHhHHHHhhhhhhcCCceeEEE
Q 003283 448 VVAATDLTLLALAGIGLHHGKKLGFAS 474 (834)
Q Consensus 448 ~La~vDP~~l~flG~~~~~~~~~~~~~ 474 (834)
++...+ .+-.++..+...+.+..+.+
T Consensus 106 Pli~~~-~i~~l~~~~~~~~~~~~~~~ 131 (229)
T 1qwj_A 106 PCLHPT-DLQKVAEMIREEGYDSVFSV 131 (229)
T ss_dssp TTCCHH-HHHHHHHHHHSSCCSEEEEE
T ss_pred CcCCHH-HHHHHHHHHHhCCCCEEEEE
Confidence 998752 12233444444455544443
No 26
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*
Probab=96.91 E-value=0.0032 Score=63.62 Aligned_cols=179 Identities=9% Similarity=0.053 Sum_probs=101.9
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
++..|+||||.||||| ||- ++|+ .|+++++..++++... | ..-.++|.|.. +.+.
T Consensus 2 ~~~aiIlA~G~~~R~~---~K~--l~~i-----~g~pli~~~i~~~~~~--------~--~~~~ivvv~~~-----~~i~ 56 (245)
T 1h7e_A 2 KAVIVIPARYGSSRLP---GKP--LLDI-----VGKPMIQHVYERALQV--------A--GVAEVWVATDD-----PRVE 56 (245)
T ss_dssp CEEEEEECCSCCSSST---TGG--GCEE-----TTEEHHHHHHHHHHTC--------T--TCCEEEEEESC-----HHHH
T ss_pred CeEEEEEcCCcCCCCC---CCc--cccc-----CCchHHHHHHHHHHhC--------C--CCCeEEEECCc-----HHHH
Confidence 4678999999999997 998 9988 7999999988887543 2 11356676653 5677
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (834)
++++++ |. . ++... ...+.|-++++.++.. + +-+++.+.+.|.
T Consensus 57 ~~~~~~---~~-----~--------~~~~~------------~~~~~g~~~~~~~~~~------~---~~~~~lv~~~D~ 99 (245)
T 1h7e_A 57 QAVQAF---GG-----K--------AIMTR------------NDHESGTDRLVEVMHK------V---EADIYINLQGDE 99 (245)
T ss_dssp HHHHHT---TC-----E--------EEECC------------SCCSSHHHHHHHHHHH------S---CCSEEEECCTTC
T ss_pred HHHHHc---CC-----e--------EEeCC------------CccCCcHHHHHHHHHh------C---CCCEEEEEcCCc
Confidence 777753 32 1 12100 0123445556655542 1 457899999999
Q ss_pred CcccccHhHHHHhhhhhhc-CCceeEEEeeecC----CCCcCceEEEEeecCCCccccceEEEEecc--cCccCCCCCCC
Q 003283 448 VVAATDLTLLALAGIGLHH-GKKLGFASCKRSS----GATEGINVLIEKKNLDGKWAYGLSCIEYTE--FDKFGITRGPF 520 (834)
Q Consensus 448 ~La~vDP~~l~flG~~~~~-~~~~~~~~vvRK~----~~~ekvGvL~~~~~~dGk~~~~~~vVEYsE--l~~~~~~~~~~ 520 (834)
++...+ .+-.++..+... +.++.+.+++..+ .+ ..+.++.. .+|+ +. .+++ .+.. +.
T Consensus 100 P~~~~~-~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~g~----~~--~~~~~~~~~~-----r~ 163 (245)
T 1h7e_A 100 PMIRPR-DVETLLQGMRDDPALPVATLCHAISAAEAAEP-STVKVVVN---TRQD----AL--YFSRSPIPYP-----RN 163 (245)
T ss_dssp TTCCHH-HHHHHHHHHHHCTTCCEEEEEEEECHHHHTCT-TSCEEEEC---TTCB----EE--EEESSCSSCC-----TT
T ss_pred CcCCHH-HHHHHHHHHHhCCCCCEEEEeecCCHHHhcCC-CCcEEEEC---CCCc----EE--EeecCCCCCC-----cc
Confidence 987642 122334444444 4555554422210 11 12334432 5665 33 3333 1111 00
Q ss_pred CCCCccccCccceeeeEEeHHHHHhhh
Q 003283 521 SSNGLQADFPANTNILYVDLASAELVG 547 (834)
Q Consensus 521 ~dg~l~s~f~~Ninnl~fsL~~L~~vl 547 (834)
+ ... .+..|+..++|+.+.+.+.+
T Consensus 164 -~-~~~-~~~~~~g~y~~~~~~l~~~~ 187 (245)
T 1h7e_A 164 -A-EKA-RYLKHVGIYAYRRDVLQNYS 187 (245)
T ss_dssp -G-GGC-CEEEEEEEEEEEHHHHHHGG
T ss_pred -c-ccC-ceeEEEEEEEcCHHHHHHHH
Confidence 0 011 12249999999999887765
No 27
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*
Probab=96.85 E-value=0.014 Score=59.93 Aligned_cols=126 Identities=13% Similarity=0.139 Sum_probs=75.6
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
++..|+||||.||||| +|- ++|+ .|+++++..++++... | . -.++|.|.. +.+.
T Consensus 2 ~~~aiIlA~G~g~R~~---~K~--l~~~-----~gkpli~~~l~~l~~~--------~--~-~~ivvv~~~-----~~i~ 55 (262)
T 1vic_A 2 SFTVIIPARFASSRLP---GKP--LADI-----KGKPMIQHVFEKALQS--------G--A-SRVIIATDN-----ENVA 55 (262)
T ss_dssp CCEEEEECCCCCSSST---TGG--GCEE-----TTEEHHHHHHHHHHHT--------T--C-SEEEEEESC-----HHHH
T ss_pred CcEEEEEcCCCCCCCC---CCc--cccC-----CCeEHHHHHHHHHHhC--------C--C-ceEEEECCc-----HHHH
Confidence 3567899999999997 498 9888 7999999999888653 2 2 345666653 4567
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (834)
+++++ +|. .++.+. ...|.|-|.+..++ +.+...+-+++.|.+.|.
T Consensus 56 ~~~~~---~~~-----~~~~~~--------------------~~~~~g~~~~~~~~------~~l~~~~~~~vlv~~~D~ 101 (262)
T 1vic_A 56 DVAKS---FGA-----EVCMTS--------------------VNHNSGTERLAEVV------EKLAIPDNEIIVNIQGDE 101 (262)
T ss_dssp HHHHH---TTC-----EEEECC--------------------CSSCCHHHHHHHHH------HHTTCCTTCEEEECCTTC
T ss_pred HHHHh---cCC-----EEEECC--------------------ccccCChHHHHHHH------HHhccCCCCEEEEEeCCc
Confidence 77765 232 111110 01233444333322 222223568999999999
Q ss_pred CcccccHhHHHHhhhhhhcCCceeEEE
Q 003283 448 VVAATDLTLLALAGIGLHHGKKLGFAS 474 (834)
Q Consensus 448 ~La~vDP~~l~flG~~~~~~~~~~~~~ 474 (834)
++...+ .+-.++......+.++.+.+
T Consensus 102 P~i~~~-~i~~l~~~~~~~~~~~~~~~ 127 (262)
T 1vic_A 102 PLIPPV-IVRQVADNLAKFNVNMASLA 127 (262)
T ss_dssp TTCCHH-HHHHHHHHHHHHTCSEEEEE
T ss_pred CccCHH-HHHHHHHHHHhcCCCEEEEE
Confidence 987642 12233444445555655444
No 28
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Probab=96.83 E-value=0.0069 Score=66.77 Aligned_cols=180 Identities=14% Similarity=0.115 Sum_probs=101.3
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
++..|+||||.|||||-..||. ++|+ .|++++++.++++... | .-.++|.|.. ..+...
T Consensus 5 ~~~aiIlA~G~g~Rl~~~~pK~--l~~i-----~gkpli~~~l~~l~~~--------~---~~~iivv~~~---~~~~i~ 63 (456)
T 2v0h_A 5 ALSAVILAAGKGTRMYSDLPKV--LHTI-----AGKPMVKHVIDTAHQL--------G---SENIHLIYGH---GGDLMR 63 (456)
T ss_dssp CEEEEEECCCCCGGGCSSSCGG--GSEE-----TTEEHHHHHHHHHHHT--------T---CSCEEEEECT---THHHHH
T ss_pred cceEEEECCCCCcccCCCCCcc--ccEE-----CCccHHHHHHHHHHhC--------C---CCcEEEEeCC---CHHHHH
Confidence 5778999999999999778999 9998 7999999999888653 2 1246777776 456666
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCc-HHHHHHHhcCchHHHHHcCceEEEEEeCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHG-AIWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHG-dIy~aL~~sGlLd~l~~~Gikyi~v~~vD 446 (834)
+++.++ .+.+..|. .+-|-+ .++.++.. ++ .-+++.+.+.|
T Consensus 64 ~~~~~~--------~~~~v~~~----------------------~~~g~~~~~~~~~~~---~~-----~~~~vlv~~~D 105 (456)
T 2v0h_A 64 THLANE--------QVNWVLQT----------------------EQLGTAHAVQQAAPF---FK-----DNENIVVLYGD 105 (456)
T ss_dssp HHTTTC--------CCEEEECS----------------------CCCCHHHHHHHHGGG---CC-----TTSEEEEEETT
T ss_pred HHhhcC--------CcEEEeCC----------------------CCCCcHHHHHHHHHh---cC-----CCCeEEEEcCC
Confidence 665432 12221110 122322 33333321 11 15799999999
Q ss_pred CCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcc
Q 003283 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (834)
Q Consensus 447 N~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (834)
.++...+ .+-.++..... .++.+.+ .+...+ .+-|.+.. .+|+ ....+|.....+.. .
T Consensus 106 ~P~i~~~-~i~~l~~~~~~--~~~~~~~-~~~~~~-~~~g~v~~---~~g~---v~~~~ek~~~~~~~-----------~ 163 (456)
T 2v0h_A 106 APLITKE-TLEKLIEAKPE--NGIALLT-VNLDNP-TGYGRIIR---ENGN---VVAIVEQKDANAEQ-----------L 163 (456)
T ss_dssp CTTCCHH-HHHHHHHHCCT--TSEEEEE-EECSSC-TTSCEEEE---ETTE---EEEEECTTTCCHHH-----------H
T ss_pred cceeCHH-HHHHHHHHHhc--CCEEEEE-eecCCC-CccceEEE---cCCc---EEEEEECCCCChhH-----------h
Confidence 9987642 12122333222 3443333 333322 33455543 2554 12233332211110 0
Q ss_pred ccCccceeeeEEeHHHHHhhhc
Q 003283 527 ADFPANTNILYVDLASAELVGS 548 (834)
Q Consensus 527 s~f~~Ninnl~fsL~~L~~vl~ 548 (834)
..+..|+..+.|+.+.+.+.++
T Consensus 164 ~~~~~~~Giy~~~~~~l~~~l~ 185 (456)
T 2v0h_A 164 NIKEVNTGVMVSDGASFKKWLA 185 (456)
T ss_dssp TCCEEEEEEEEEEHHHHHHHHT
T ss_pred cCcEEEEEEEEEEHHHHHHHHH
Confidence 0133599999999988877765
No 29
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}
Probab=96.81 E-value=0.019 Score=60.82 Aligned_cols=212 Identities=12% Similarity=0.019 Sum_probs=112.2
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
++..|+||||.|||||- ||- ++|++ + .|+++++..++++... | .-.++|.|.. ...+...
T Consensus 5 ~~~~vIlAaG~g~R~~~--~K~--l~~ig-~--~g~pli~~~l~~~~~~--------~---~~~i~vv~~~--~~~~~~~ 64 (303)
T 3pnn_A 5 KPTLFVLAAGMGSRYGS--LKQ--LDGIG-P--GGDTIMDYSVYDAIRA--------G---FGRLVFVIRH--SFEKEFR 64 (303)
T ss_dssp CCEEEEECTTCBCTTSS--BCC--CCCCS-T--TSCCHHHHHHHHHHHH--------T---CCEEEEEECG--GGHHHHH
T ss_pred ceEEEEECCCCcccCCC--Cce--EeEcC-C--CCeeHHHHHHHHHHHC--------C---CCeEEEEcCc--hHHHHHH
Confidence 45678999999999996 898 88884 1 5899999999987553 3 2357788876 3357888
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (834)
++|.....+++ +|.+..|+..- +. ....+.... ..|-|-| +..+.....++ +.+.|.+.|+
T Consensus 65 ~~~~~~~~~~~---~i~~~~~~~~~-~~-~~~~~~~~~-----~~~~Gt~--~al~~a~~~i~-------~~~lV~~gD~ 125 (303)
T 3pnn_A 65 EKILTKYEGRI---PVELVFQELDR-LP-EGFSCPEGR-----EKPWGTN--HAVLMGRDAIR-------EPFAVINADD 125 (303)
T ss_dssp HHTHHHHTTTS---CEEEEECCTTC-CC-TTCCCCTTC-----CSCCCHH--HHHHTTTTTCC-------SCEEEEESSC
T ss_pred HHHHHHhccCC---cEEEEeccccc-cc-ccccccccc-----cccCCcH--HHHHHHHHhcC-------CCEEEEECCe
Confidence 88886543333 56666666311 11 111111110 1344544 33333333331 3456667787
Q ss_pred CcccccHhHHHHhhhhhh---cCCceeEEEeeecCCC-CcC----ceEEEEeecCCCccccceEEEEecccCccCC-CCC
Q 003283 448 VVAATDLTLLALAGIGLH---HGKKLGFASCKRSSGA-TEG----INVLIEKKNLDGKWAYGLSCIEYTEFDKFGI-TRG 518 (834)
Q Consensus 448 ~La~vDP~~l~flG~~~~---~~~~~~~~~vvRK~~~-~ek----vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~-~~~ 518 (834)
+ ...| .+-.++-+... .+.++.+.+ .+-..+ ..- -|++.. ..+|+ ...++|-.+.+...- ..-
T Consensus 126 l-~~~~-~~~~l~~~~~~~~~~~~~~~v~~-~~~~~~~~~~g~~~~G~v~~--d~~g~---v~~i~Ekp~~~~~~~~~~~ 197 (303)
T 3pnn_A 126 F-YGRN-GFEVLARKLMTLEGKQGEYCMVG-YRVGNTLSESGGVSRGVCQV--DEKHL---LTGVVERTGIERTDGTISF 197 (303)
T ss_dssp B-CCHH-HHHHHHHHHHTTTTCSSEEEEEE-EEGGGSCBTTBCEEEEEEEE--CTTSB---EEEEEEEEEEEEETTEEEE
T ss_pred e-cCHH-HHHHHHHHHHHhccccCceEEEE-EECCCccCccCceeeeeEee--CCCCc---EEEEEECCCCccccccccc
Confidence 4 3333 23334555443 345555554 333333 221 256643 24666 245666654432100 000
Q ss_pred CCCCCCcc---ccCccceeeeEEeHHHHHhh
Q 003283 519 PFSSNGLQ---ADFPANTNILYVDLASAELV 546 (834)
Q Consensus 519 ~~~dg~l~---s~f~~Ninnl~fsL~~L~~v 546 (834)
...+|... .....|++..+|+-+.++.+
T Consensus 198 ~~~~g~~~~~~~~~~i~~GiY~f~~~~~~~l 228 (303)
T 3pnn_A 198 RDETGKICTLAEDAPVSMNMWGFTPDYFDYS 228 (303)
T ss_dssp ECTTSCEEEECTTCEEEEEEEEECTHHHHHH
T ss_pred cccccccccCCCCCEEEEEEEEECHHHHHHH
Confidence 01112100 01224999999998876543
No 30
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*
Probab=96.76 E-value=0.015 Score=64.40 Aligned_cols=181 Identities=12% Similarity=0.071 Sum_probs=102.6
Q ss_pred EEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHH
Q 003283 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSL 369 (834)
Q Consensus 290 avVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~~f 369 (834)
-.|+||||.|||||-..||- ++|+ .|++++++.++++... | .-.++|.|.. ..+...++
T Consensus 13 ~~vIlAaG~g~R~~~~~pK~--l~~i-----~gkpli~~~l~~l~~~--------g---~~~iivv~~~---~~~~i~~~ 71 (468)
T 1hm9_A 13 FAIILAAGKGTRMKSDLPKV--LHKV-----AGISMLEHVFRSVGAI--------Q---PEKTVTVVGH---KAELVEEV 71 (468)
T ss_dssp EEEEECCCCCGGGCCSSCGG--GSEE-----TTEEHHHHHHHHHHTT--------C---CSEEEEEECT---THHHHHHS
T ss_pred cEEEEcCCCCccCCCCCCcE--eeEE-----CCccHHHHHHHHHHhc--------C---CCCEEEEECC---CHHHHHHH
Confidence 46789999999999878999 9998 7999999998887542 3 2356777776 34444443
Q ss_pred HHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCCCC
Q 003283 370 CERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (834)
Q Consensus 370 le~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~v~~vDN~ 448 (834)
+.+ .+.+..|+ .+-|-++ ++.++ +.+. ..-+++.+.+.|.+
T Consensus 72 ~~~---------~i~~v~~~----------------------~~~G~~~sl~~a~------~~~~-~~~~~vlv~~~D~P 113 (468)
T 1hm9_A 72 LAG---------QTEFVTQS----------------------EQLGTGHAVMMTE------PILE-GLSGHTLVIAGDTP 113 (468)
T ss_dssp SSS---------SSEEEECS----------------------SCCCHHHHHHTTH------HHHT-TCCSEEEEEETTCT
T ss_pred hCC---------CcEEEeCC----------------------ccCChHHHHHHHH------HHhc-cCCCeEEEEeCCcc
Confidence 322 22221111 1223332 23222 2332 22479999999999
Q ss_pred cccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCCcccc
Q 003283 449 VAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQAD 528 (834)
Q Consensus 449 La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s~ 528 (834)
+...+ .+-.++-.+...++++.+.+ .+... ...-|.+.. ..+|+ ++++.|=+... .+ . ...
T Consensus 114 ~i~~~-~i~~l~~~~~~~~~~~~i~~-~~~~~-~~~~g~v~~--d~~g~------v~~~~ek~~~~------~~-~-~~~ 174 (468)
T 1hm9_A 114 LITGE-SLKNLIDFHINHKNVATILT-AETDN-PFGYGRIVR--NDNAE------VLRIVEQKDAT------DF-E-KQI 174 (468)
T ss_dssp TCCHH-HHHHHHHHHHHTTCSEEEEE-EECSC-CTTSCEEEE--CTTCC------EEEEECTTTCC------TT-G-GGC
T ss_pred ccCHH-HHHHHHHHHHhcCCcEEEEE-eccCC-CCceeEEEE--CCCCC------EEEEEECCCCC------hH-H-hcC
Confidence 87642 12233455555566665554 33322 234566643 23554 33443322210 00 0 011
Q ss_pred CccceeeeEEeHHHHHhhhc
Q 003283 529 FPANTNILYVDLASAELVGS 548 (834)
Q Consensus 529 f~~Ninnl~fsL~~L~~vl~ 548 (834)
+..|+..++|+-+.|.+.+.
T Consensus 175 ~~~~~Giy~f~~~~l~~~l~ 194 (468)
T 1hm9_A 175 KEINTGTYVFDNERLFEALK 194 (468)
T ss_dssp CEEEEEEEEEEHHHHHHHHT
T ss_pred eEEEEEEEEEEHHHHHHHHH
Confidence 34599999999998877664
No 31
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*
Probab=96.59 E-value=0.0017 Score=64.57 Aligned_cols=54 Identities=24% Similarity=0.330 Sum_probs=42.9
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCC
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~ 358 (834)
++.+|+||||.|||||...||. ++|+ .|+++++..++++.+.. ..-.++|-|+.
T Consensus 2 ~~~~vIlA~G~g~R~~~~~~K~--l~~~-----~g~pli~~~l~~l~~~~----------~~~~i~vv~~~ 55 (223)
T 2xwl_A 2 ATVAVVPAAGSGERLRAGRPKA--FVTL-----GGTPLLEHALSGLRASG----------VIDRIVIAVPP 55 (223)
T ss_dssp CEEEEEECCCCCGGGTSSSCGG--GSEE-----TTEEHHHHHHHHHHHHS----------CCSEEEEEECG
T ss_pred ceEEEEECCccCcccCCCCCCe--eeEE-----CCeEHHHHHHHHHhcCC----------CCCeEEEEEcc
Confidence 4678999999999999777999 9888 79999999998886642 12256777776
No 32
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}
Probab=96.50 E-value=0.0011 Score=64.35 Aligned_cols=106 Identities=14% Similarity=0.104 Sum_probs=70.0
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
++..|+||||.||||| .||. ++|+ .|+++++..++++... | .-.++|.|+. ..+...
T Consensus 5 ~~~~iIlA~G~~~R~g--~~K~--l~~~-----~g~pli~~~l~~l~~~--------~---~~~i~vv~~~---~~~~~~ 61 (199)
T 2waw_A 5 RVTGVVLAAGYSRRLG--TPKQ--LLPL-----GDTTLLGATLAMARRC--------P---FDQLIVTLGG---AADEVL 61 (199)
T ss_dssp CEEEEEEESSCCTTTT--SCGG--GCEE-----TTEEHHHHHHHHHHTS--------S---CSEEEEEECT---THHHHH
T ss_pred ceEEEEECCCCCCCCC--CCEE--eCEe-----CccCHHHHHHHHHHhC--------C---CCcEEEEeCC---CHHHHH
Confidence 5788999999999999 6898 9888 7999999988877542 2 1256777776 445555
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCC-CcHHHHHHHhcCchHHHHHcCceEEEEEeCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGG-HGAIWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~G-HGdIy~aL~~sGlLd~l~~~Gikyi~v~~vD 446 (834)
+++++ +|. . .+.+. + .+.| .+.++.+|..- ..+.+++.|...|
T Consensus 62 ~~~~~---~~~-----~--------~~~~~-~------------~~~g~~~~i~~al~~~-------~~~~~~vlv~~~D 105 (199)
T 2waw_A 62 EKVEL---DGL-----D--------IVLVD-D------------AGLGCSSSLKSALTWV-------DPTAEGIVLMLGD 105 (199)
T ss_dssp HHSCC---TTS-----E--------EEECC-C------------CCTTCCCHHHHHHHTS-------CTTCSEEEEEETT
T ss_pred HHhcc---CCC-----E--------EEECC-C------------cccCHHHHHHHHHHhh-------hccCCeEEEEeCC
Confidence 44432 222 1 11111 0 1124 45677777542 1256899999999
Q ss_pred CCcccc
Q 003283 447 NVVAAT 452 (834)
Q Consensus 447 N~La~v 452 (834)
.++...
T Consensus 106 ~P~~~~ 111 (199)
T 2waw_A 106 QPGITA 111 (199)
T ss_dssp CTTCCH
T ss_pred cccCCH
Confidence 998765
No 33
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A
Probab=96.48 E-value=0.0019 Score=62.75 Aligned_cols=106 Identities=15% Similarity=0.184 Sum_probs=67.4
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
++..|+||||.||||| .||. ++|+ .|+++++..++++... | .-.++|.|.. ..+...
T Consensus 5 ~~~~iIlA~G~~~R~g--~~K~--l~~~-----~g~pll~~~l~~l~~~--------~---~~~i~vv~~~---~~~~~~ 61 (197)
T 2wee_A 5 QITGVVLAAGRSNRLG--TPKQ--LLPY-----RDTTVLGATLDVARQA--------G---FDQLILTLGG---AASAVR 61 (197)
T ss_dssp EEEEEEEECCCCTTTS--SCGG--GSEE-----TTEEHHHHHHHHHHHT--------T---CSEEEEEECT---THHHHH
T ss_pred ceEEEEECCCCcccCC--CCeE--cCee-----CCccHHHHHHHHHHhc--------C---CCcEEEEeCC---CHHHHH
Confidence 4778999999999998 7898 9888 7999999998888653 2 1256777776 345554
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCC-CcHHHHHHHhcCchHHHHHcCceEEEEEeCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGG-HGAIWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~G-HGdIy~aL~~sGlLd~l~~~Gikyi~v~~vD 446 (834)
+++.+ +|+ .+ +.+.+ .+-| .+.++.++..- ..+.+++.|...|
T Consensus 62 ~~~~~---~~~-----~~--------~~~~~-------------~~~g~~~~i~~al~~~-------~~~~~~vlv~~~D 105 (197)
T 2wee_A 62 AAMAL---DGT-----DV--------VVVED-------------VERGCAASLRVALARV-------HPRATGIVLMLGD 105 (197)
T ss_dssp HHSCC---TTS-----EE--------EECC-----------------CCHHHHHHHHTTS-------CTTEEEEEEEETT
T ss_pred HHhcc---CCC-----EE--------EECCC-------------cccCHHHHHHHHHHHh-------cccCCeEEEEeCC
Confidence 44432 221 11 11110 0113 24566665331 1256899999999
Q ss_pred CCcccc
Q 003283 447 NVVAAT 452 (834)
Q Consensus 447 N~La~v 452 (834)
.++...
T Consensus 106 ~P~~~~ 111 (197)
T 2wee_A 106 QPQVAP 111 (197)
T ss_dssp CTTCCH
T ss_pred cCCCCH
Confidence 998765
No 34
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Probab=96.47 E-value=0.002 Score=65.55 Aligned_cols=190 Identities=15% Similarity=0.132 Sum_probs=100.6
Q ss_pred EEEEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHH
Q 003283 289 LGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 365 (834)
Q Consensus 289 vavVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~ 365 (834)
+..|+||||.||||+- +.||- ++|+ .|+++++..++++.+. | .-.++|.|+. .++.
T Consensus 3 ~~avIlAaG~gtRl~~lt~~~pK~--l~~i-----~gkpli~~~l~~l~~~--------g---~~~i~vv~~~---~~~~ 61 (259)
T 1tzf_A 3 SKAVILAGGLGTRLSEETIVKPKP--MVEI-----GGKPILWHIMKMYSVH--------G---IKDFIICCGY---KGYV 61 (259)
T ss_dssp CEEEEEECSCC--------CCCGG--GCEE-----TTEEHHHHHHHHHHHT--------T---CCEEEEEECT---THHH
T ss_pred cEEEEECCCCcccCCCccCCCCcc--ccEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEccc---CHHH
Confidence 4568899999999996 67998 9998 7999999988887652 3 2357888887 5678
Q ss_pred HHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCc----cccCCCCcHHHHHHHhcCchHHHHHcCceEEE
Q 003283 366 ITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAP----VCKPGGHGAIWKLAHDKGIFKWFHDNGRKGAT 441 (834)
Q Consensus 366 T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i----~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~ 441 (834)
+.+++.+...++ .++.+..|+. .+.-.... ..++.+ .-.+-|.|+...+... .++ +-+++.
T Consensus 62 i~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~---~~~~~v~~~~~~~~~gt~~al~~a~~--~~~-----~~~~~l 126 (259)
T 1tzf_A 62 IKEYFANYFLHM---SDVTFHMAEN--RMEVHHKR---VEPWNVTLVDTGDSSMTGGRLKRVAE--YVK-----DDEAFL 126 (259)
T ss_dssp HHHHHHTHHHHH---SCEEEEGGGT--EEEETTCC---CCCCEEEEEECCSSCCHHHHHHHTGG--GTT-----TSSCEE
T ss_pred HHHHHhhccccc---cccccccccc--ceeeeecc---ccccceeeeecccccCcHHHHHHHHH--hcC-----CCCcEE
Confidence 889988643111 1233333332 11000000 011111 1124565554332221 121 236788
Q ss_pred EEeCCCCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCC
Q 003283 442 VRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFS 521 (834)
Q Consensus 442 v~~vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~ 521 (834)
|.+.|++. ..| +-.++..+...+..+.+.. ++ +...-|++.. .+|+ ++++.|-|..
T Consensus 127 v~~~D~~~-~~~--~~~~~~~~~~~~~~~t~~~-~~---~~~~~g~v~~---~~g~------v~~~~ekp~~-------- 182 (259)
T 1tzf_A 127 FTYGDGVA-DLD--IKATIDFHKAHGKKATLTA-TF---PPGRFGALDI---QAGQ------VRSFQEKPKG-------- 182 (259)
T ss_dssp EEETTEEE-CCC--HHHHHHHHHHHCCSEEEEE-EC---CCCCSEEEEE---ETTE------EEEEEESCSC--------
T ss_pred EEECCEec-ccC--HHHHHHHHHHhCCeEEEEE-ec---CCCCccEEEE---cCCE------EEEEEecCCC--------
Confidence 88999843 222 3344556555565544322 22 2234676654 2565 3444442211
Q ss_pred CCCccccCccceeeeEEeHHHH
Q 003283 522 SNGLQADFPANTNILYVDLASA 543 (834)
Q Consensus 522 dg~l~s~f~~Ninnl~fsL~~L 543 (834)
. .+..|+..++|+-+.+
T Consensus 183 ~-----~~~~~~Giy~~~~~~l 199 (259)
T 1tzf_A 183 D-----GAMINGGFFVLNPSVI 199 (259)
T ss_dssp C-----SCCEECCCEEECGGGG
T ss_pred C-----CceEEEEEEEeCHHHH
Confidence 0 1345888888888765
No 35
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=96.45 E-value=0.0023 Score=65.81 Aligned_cols=64 Identities=20% Similarity=0.331 Sum_probs=48.6
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
+++.|+||||.|||||.+.||- ++++ .|+++++..++.+++.. ..-.++|.|+. +..+...
T Consensus 7 ~~~aIIlAaG~g~Rmg~~~~K~--l~~l-----~Gkpll~~~l~~~~~~~----------~~~~ivVv~~~--~~~~~~~ 67 (231)
T 3q80_A 7 EVVAIVPAAGSGERLAVGVPKA--FYQL-----DGQTLIERAVDGLLDSG----------VVDTVVVAVPA--DRTDEAR 67 (231)
T ss_dssp CEEEEEECCCCCTTTCSSSCGG--GCEE-----TTEEHHHHHHHHHHHTS----------CCCEEEEEECG--GGHHHHH
T ss_pred ceEEEEECCCCCccCCCCCCce--EEEE-----CCeEHHHHHHHHHHhCC----------CCCeEEEECCh--HHHHHHH
Confidence 6889999999999999988999 9888 79999999998876531 12256777776 3334555
Q ss_pred HHH
Q 003283 368 SLC 370 (834)
Q Consensus 368 ~fl 370 (834)
+++
T Consensus 68 ~~~ 70 (231)
T 3q80_A 68 QIL 70 (231)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 36
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*
Probab=96.26 E-value=0.0018 Score=64.79 Aligned_cols=54 Identities=11% Similarity=0.225 Sum_probs=36.7
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCC
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~ 358 (834)
++..|+||||.|||||.+.||. ++|+ .|++++++.++++.+.. + .-.++|.|..
T Consensus 4 ~~~aiIlAaG~g~R~~~~~~K~--l~~i-----~g~pli~~~l~~l~~~~-------~---~~~ivvv~~~ 57 (228)
T 2yc3_A 4 SVSVILLAGGQGKRMKMSMPKQ--YIPL-----LGQPIALYSFFTFSRMP-------E---VKEIVVVCDP 57 (228)
T ss_dssp CEEEEEECCCCC-------CGG--GSEE-----TTEEHHHHHHHHHHHCT-------T---EEEEEEECCG
T ss_pred ceEEEEECCccccccCCCCCcc--EeEE-----CCEEHHHHHHHHHHcCC-------C---CCeEEEEECh
Confidence 5778999999999999777999 9888 79999999988876531 2 2256777776
No 37
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A
Probab=96.22 E-value=0.002 Score=64.96 Aligned_cols=54 Identities=22% Similarity=0.274 Sum_probs=42.7
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCC
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~ 358 (834)
++..|+||||.|||||...||. ++|+ .|+++++..++++... + ..-.++|-|..
T Consensus 7 ~~~~iIlA~G~g~R~~~~~~K~--l~~i-----~g~pll~~~i~~l~~~--------~--~~~~ivvv~~~ 60 (236)
T 1i52_A 7 DVCAVVPAAGFGRRMQTECPKQ--YLSI-----GNQTILEHSVHALLAH--------P--RVKRVVIAISP 60 (236)
T ss_dssp CEEEEEEECCCCGGGCCSSCGG--GSEE-----TTEEHHHHHHHHHHTS--------T--TEEEEEEEECT
T ss_pred ceeEEEECCcCccccCCCCCcc--eeeE-----CCEEHHHHHHHHHHhC--------C--CCCeEEEEeCc
Confidence 5788999999999999777999 9888 7999999998887643 1 12356777765
No 38
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A
Probab=96.18 E-value=0.0023 Score=64.06 Aligned_cols=64 Identities=14% Similarity=0.216 Sum_probs=38.4
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
++..|+||||.|||||.+.||. ++|+ .|+++++..++++.+.. + .-.++|-|+. .++...
T Consensus 6 ~~~aiIlA~G~g~R~~~~~~K~--l~~~-----~gkpli~~~l~~l~~~~-------~---~~~ivvv~~~---~~~~~~ 65 (231)
T 1vgw_A 6 KNIALIPAAGIGVRFGADKPKQ--YVEI-----GSKTVLEHVLGIFERHE-------A---VDLTVVVVSP---EDTFAD 65 (231)
T ss_dssp CEEEEEECC----------CCS--CCEE-----TTEEHHHHHHHHHHTCT-------T---CCEEEEECCT---TCSTHH
T ss_pred ceEEEEEcccccccCCCCCCce--EeEE-----CCeEHHHHHHHHHHcCC-------C---CCeEEEEECc---cHHHHH
Confidence 5788999999999999767999 9998 79999999988875431 1 2256777876 233455
Q ss_pred HHHHH
Q 003283 368 SLCER 372 (834)
Q Consensus 368 ~fle~ 372 (834)
+ +.+
T Consensus 66 ~-~~~ 69 (231)
T 1vgw_A 66 K-VQT 69 (231)
T ss_dssp H-HHH
T ss_pred H-HHh
Confidence 5 554
No 39
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13
Probab=96.17 E-value=0.0025 Score=64.01 Aligned_cols=54 Identities=22% Similarity=0.195 Sum_probs=42.9
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCC
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~ 358 (834)
.+..|+||||.|||||.+.||. ++|+ .|+++++..++++++. + ..-.++|-|..
T Consensus 13 ~~~aiILAaG~s~Rm~~~~~K~--l~~i-----~Gkpli~~~i~~l~~~--------~--~~~~ivVv~~~ 66 (234)
T 1vpa_A 13 MNVAILLAAGKGERMSENVPKQ--FLEI-----EGRMLFEYPLSTFLKS--------E--AIDGVVIVTRR 66 (234)
T ss_dssp CEEEEEEECCCCGGGCCSSCGG--GCEE-----TTEETTHHHHHHHHHC--------T--TCSEEEEEECG
T ss_pred cCeEEEEcCcchhhcCCCCCce--EEEE-----CCeEHHHHHHHHHHcC--------C--CCCeEEEEECh
Confidence 4778999999999999777998 9888 7999999999887653 1 12256777765
No 40
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}
Probab=96.05 E-value=0.0026 Score=62.20 Aligned_cols=62 Identities=21% Similarity=0.370 Sum_probs=45.8
Q ss_pred EEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHH
Q 003283 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSL 369 (834)
Q Consensus 290 avVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~~f 369 (834)
..|+||||.|||||- .||. ++|+ .|+++++..++++++. | .-.++|.|+. .++.+.++
T Consensus 2 ~aiIlA~G~s~R~~~-~~K~--l~~~-----~g~pli~~~l~~l~~~--------~---~~~v~vv~~~---~~~~i~~~ 59 (196)
T 3rsb_A 2 DALIMAGGKGTRMGG-VEKP--LIKL-----CGRCLIDYVVSPLLKS--------K---VNNIFIATSP---NTPKTKEY 59 (196)
T ss_dssp EEEEEC----CGGGG-SCGG--GCEE-----TTEEHHHHHHHHHHSS--------S---CCCEEEECCT---TCHHHHHH
T ss_pred EEEEECCCCCCcCCC-CCcc--EEEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEeCC---ChHHHHHH
Confidence 468899999999997 7898 9888 7999999998887542 2 2367888887 46888899
Q ss_pred HHHh
Q 003283 370 CERL 373 (834)
Q Consensus 370 le~n 373 (834)
+++.
T Consensus 60 ~~~~ 63 (196)
T 3rsb_A 60 INSA 63 (196)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 9873
No 41
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6
Probab=96.05 E-value=0.0048 Score=65.57 Aligned_cols=179 Identities=18% Similarity=0.157 Sum_probs=100.8
Q ss_pred EEEEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHH
Q 003283 289 LGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 365 (834)
Q Consensus 289 vavVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~ 365 (834)
+..|+||||.||||+ ...||- ++|+ .||+++++.++.+... | .-.++|.|+. ...+.
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~--llpi-----~gkpli~~~l~~l~~~--------g---i~~I~vv~~~--~~~~~ 63 (296)
T 1mc3_A 4 MKGIILAGGSGTRLHPITRGVSKQ--LLPI-----YDKPMIYYPLSVLMLA--------G---IREILIITTP--EDKGY 63 (296)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGG--GSEE-----TTEETTHHHHHHHHHT--------T---CCEEEEEECT--TTHHH
T ss_pred cEEEEECCCCCCcCCcccCCCCce--eeEE-----CCeeHHHHHHHHHHhC--------C---CCcEEEEech--hHHHH
Confidence 456889999999999 678998 9998 7899999998887542 3 1245666664 35667
Q ss_pred HHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEe
Q 003283 366 ITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQ 444 (834)
Q Consensus 366 T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGd-Iy~aL~~sGlLd~l~~~Gikyi~v~~ 444 (834)
..+++.+...||+ ++.+..|. .|.|-++ ++.++ +.+ . +-.++.+ .
T Consensus 64 i~~~l~~g~~~g~---~i~~~~~~----------------------~~~G~~~al~~a~------~~i-~-~~~~~lv-~ 109 (296)
T 1mc3_A 64 FQRLLGDGSEFGI---QLEYAEQP----------------------SPDGLAQAFIIGE------TFL-N-GEPSCLV-L 109 (296)
T ss_dssp HHHHHTTSGGGTC---EEEEEECS----------------------SCCCSTHHHHHTH------HHH-T-TSCEEEE-E
T ss_pred HHHHHhcccccCc---eEEEeccC----------------------CCCCHHHHHHHHH------HHh-C-CCCEEEE-E
Confidence 7788876444554 23222221 2455554 33332 122 1 2234444 4
Q ss_pred CCCCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCC
Q 003283 445 VSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNG 524 (834)
Q Consensus 445 vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~ 524 (834)
.||++... .|-.++-.+...+.+..+. +.+... .++-|++.. ..+|+ ++.+.|-|.. . .
T Consensus 110 gD~~~~~~--~l~~~l~~~~~~~~~~~v~-~~~v~d-p~~yg~v~~--d~~g~------v~~~~ekp~~--------~-~ 168 (296)
T 1mc3_A 110 GDNIFFGQ--GFSPKLRHVAARTEGATVF-GYQVMD-PERFGVVEF--DDNFR------AISLEEKPKQ--------P-K 168 (296)
T ss_dssp TTEEEECS--SCHHHHHHHTTCCSSEEEE-EEECSC-CSSSBBCEE--ETTEE------EEECCBSCSS--------C-S
T ss_pred CCcccccc--CHHHHHHHHHHcCCCCEEE-EEECCC-cccCCEEEE--CCCCc------EEEEEECCCC--------C-C
Confidence 89988653 2223344443344444443 233333 345677653 13554 4444432211 0 0
Q ss_pred ccccCccceeeeEEeHHHHHh
Q 003283 525 LQADFPANTNILYVDLASAEL 545 (834)
Q Consensus 525 l~s~f~~Ninnl~fsL~~L~~ 545 (834)
+ ...|+...+|+-+.++.
T Consensus 169 --s-~~~~~Giy~~~~~~l~~ 186 (296)
T 1mc3_A 169 --S-NWAVTGLYFYDSKVVEY 186 (296)
T ss_dssp --C-SEEEEEEEECCTHHHHH
T ss_pred --C-CEEEEEEEEEcHHHHHH
Confidence 1 23599999999887654
No 42
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*
Probab=96.04 E-value=0.0034 Score=62.79 Aligned_cols=66 Identities=15% Similarity=0.199 Sum_probs=40.3
Q ss_pred EEEEEecCCccccCCC-CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 289 LGEIYPLGGSADRLGL-VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 289 vavVlLAGGlGTRLG~-~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
+..|+||||.|||||- +.||. ++|+ .|+++++..++++.... + .-.++|.|.. ...+...
T Consensus 3 ~~~iIlA~G~g~R~~~~~~~K~--l~~i-----~g~pli~~~l~~l~~~~-------~---~~~i~vv~~~--~~~~~~~ 63 (236)
T 2vsh_A 3 IYAGILAGGTGTRMGISNLPKQ--FLEL-----GDRPILIHTIEKFVLEP-------S---IEKIVVGVHG--DWVSHAE 63 (236)
T ss_dssp EEEEEEEC-----------CGG--GSEE-----TTEEHHHHHHHHHHTCT-------T---CCCEEEEECG--GGHHHHH
T ss_pred eEEEEeCCccccccCCCCCCCe--eeee-----CCccHHHHHHHHHHcCC-------C---CCeEEEEeCH--HHHHHHH
Confidence 5678999999999995 56898 9888 79999999888875431 1 2256777776 3336677
Q ss_pred HHHHHh
Q 003283 368 SLCERL 373 (834)
Q Consensus 368 ~fle~n 373 (834)
++++++
T Consensus 64 ~~~~~~ 69 (236)
T 2vsh_A 64 DLVDKY 69 (236)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777653
No 43
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}
Probab=96.01 E-value=0.0033 Score=62.31 Aligned_cols=48 Identities=17% Similarity=0.183 Sum_probs=38.6
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCC
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~ 358 (834)
++..|+||||.|||||. ||. ++|+ .|+++++..++++.. . .++|.|+.
T Consensus 2 ~~~~iIlAgG~g~Rmg~--~K~--l~~i-----~g~pll~~~l~~l~~------------~--~ivvv~~~ 49 (197)
T 3d5n_A 2 NIGVIILAAGEGKRFGG--DKL--LAKI-----DNTPIIMRTIRIYGD------------L--EKIIIVGK 49 (197)
T ss_dssp CEEEEEECSCCTTCCCS--SGG--GSBS-----SSSBHHHHHHHHTTT------------S--BCCEEECT
T ss_pred ceEEEEECCcCcccCCC--Cee--eCEe-----CceEHHHHHHHHHHh------------C--CEEEEECC
Confidence 36789999999999994 898 8887 799999988876633 2 56777776
No 44
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*
Probab=95.96 E-value=0.0037 Score=62.31 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=34.7
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQ 334 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~ 334 (834)
++..|+||||.|+||| ..||. ++|+ .|+++++..++++.
T Consensus 6 ~~~~iILAgG~s~Rmg-~~~K~--ll~i-----~G~pli~~~l~~l~ 44 (201)
T 1e5k_A 6 TITGVVLAGGKARRMG-GVDKG--LLEL-----NGKPLWQHVADALM 44 (201)
T ss_dssp SEEEEEECCCCCSSSC-SSCGG--GSEE-----TTEEHHHHHHHHHH
T ss_pred cceEEEEcCCCCCcCC-CCCCc--eeeE-----CceeHHHHHHHHHH
Confidence 5788999999999999 57898 9888 79999999998876
No 45
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=95.67 E-value=0.0044 Score=63.11 Aligned_cols=37 Identities=35% Similarity=0.456 Sum_probs=26.2
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRD 332 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~ 332 (834)
+++.|+||||.|||||.. ||. ++|+ .|+++++..+++
T Consensus 25 ~~~aiILAgG~s~Rm~~~-~K~--l~~i-----~gkpli~~~l~~ 61 (236)
T 2px7_A 25 EVSVLIPAAGNGLRLGRG-PKA--FLQV-----GGRTLLEWTLAA 61 (236)
T ss_dssp CCEEEEECCC-------C-CGG--GCBC-----SSSBHHHHHHHH
T ss_pred ceEEEEEcCCCCccCCCC-CCe--EEEE-----CCEEHHHHHHHh
Confidence 467889999999999976 998 8887 799999998887
No 46
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}
Probab=95.55 E-value=0.0047 Score=62.44 Aligned_cols=36 Identities=25% Similarity=0.468 Sum_probs=31.6
Q ss_pred EEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHH
Q 003283 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQ 334 (834)
Q Consensus 290 avVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~ 334 (834)
..|+||||.|+||| .+|. ++++ .|+++++..++++.
T Consensus 2 ~aiILAgG~s~Rmg--~~K~--ll~~-----~G~pli~~~~~~l~ 37 (208)
T 3ngw_A 2 KVAVLVGGVGRRIG--MEKT--EVML-----CGKKLIEWVLEKYS 37 (208)
T ss_dssp EEEEECCCCCTTTT--SCGG--GCEE-----TTEEHHHHHHHHHT
T ss_pred EEEEECCCchhhCC--CCCc--ccEE-----CCeeHHHHHHHHhc
Confidence 56889999999999 7898 9888 79999998888763
No 47
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}
Probab=95.53 E-value=0.0057 Score=61.24 Aligned_cols=178 Identities=13% Similarity=0.083 Sum_probs=97.4
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
++..|+||||.||||| ||. ++|+ .|+++++..++++... . -.++|.|.. +...
T Consensus 2 ~~~aiIlA~G~g~R~~---~K~--l~~i-----~g~pli~~~l~~~~~~-------~-----~~i~v~~~~-----~~i~ 54 (234)
T 2y6p_A 2 RRAVIIPARLGSTRLK---EKP--LKNL-----LGKPLIRWVVEGLVKT-------G-----ERVILATDS-----ERVK 54 (234)
T ss_dssp CEEEEEECCSCCTTTT---TGG--GCEE-----TTEEHHHHHHHHHHTT-------T-----SCEEEEESC-----HHHH
T ss_pred ceEEEEEcCCCCCCCC---CCc--ceeE-----CCEEHHHHHHHHHHHh-------C-----CEEEEECCh-----HHHH
Confidence 4678999999999999 998 9998 7999999998887542 1 134555543 4566
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 003283 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (834)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (834)
++++++ . .+ +... ...+.|-|+++.++.. .+-+++.+.+.|.
T Consensus 55 ~~~~~~----~---~~----------~~~~------------~~~~~g~~~~~~~~~~---------~~~~~vlv~~~D~ 96 (234)
T 2y6p_A 55 EVVEDL----C---EV----------FLTP------------SDLPSGSDRVLYVVRD---------LDVDLIINYQGDE 96 (234)
T ss_dssp HHHTTT----S---EE----------EECC------------TTCCSHHHHHHHHHTT---------CCCSEEEECCTTC
T ss_pred HHHHhc----e---EE----------EECC------------cccccchHHHHHHHHh---------CCCCEEEEecCCc
Confidence 665531 1 11 1100 1124566666654422 1457999999999
Q ss_pred CcccccHhHHHHhhhhhhcCCceeEEEeeec---CCCCcCceEEEEeecCCCccccceEEEEecccCccCCCCCCCCCCC
Q 003283 448 VVAATDLTLLALAGIGLHHGKKLGFASCKRS---SGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNG 524 (834)
Q Consensus 448 ~La~vDP~~l~flG~~~~~~~~~~~~~vvRK---~~~~ekvGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~ 524 (834)
++...+ .+-.++..+...+ +....+.... .++ ..++++.. .+|+ ++.+.+-+.....+. . .
T Consensus 97 P~~~~~-~i~~l~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~---~~g~------v~~~~e~~~~~~~~~--~--~ 160 (234)
T 2y6p_A 97 PFVYEE-DIKLIFRELEKGE-RVVTLARKDKEAYERP-EDVKVVLD---REGY------ALYFSRSPIPYFRKN--D--T 160 (234)
T ss_dssp CCCCHH-HHHHHHHHHHHTC-SEEEEEEECSGGGGCT-TSCEEEEC---TTSB------EEEEESSCCSCCSSC--C--S
T ss_pred CcCCHH-HHHHHHHHHHhCC-CeEEEecCCHHHhcCC-CceEEEEc---CCCC------EeeeecCCCCccccc--c--c
Confidence 887631 1222344443444 3222221211 112 23454432 4665 333333221100000 0 1
Q ss_pred ccccCccceeeeEEeHHHHHhhhc
Q 003283 525 LQADFPANTNILYVDLASAELVGS 548 (834)
Q Consensus 525 l~s~f~~Ninnl~fsL~~L~~vl~ 548 (834)
. .+..|+..++|+-+.+.++..
T Consensus 161 -~-~~~~~~giy~~~~~~l~~~~~ 182 (234)
T 2y6p_A 161 -F-YPLKHVGIYGFRKETLMEFGA 182 (234)
T ss_dssp -S-CCEEEEEEEEEEHHHHHHHHH
T ss_pred -c-eeeEEEEEEEcCHHHHHHHHh
Confidence 1 122499999999998877653
No 48
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Probab=95.25 E-value=0.0076 Score=62.21 Aligned_cols=63 Identities=22% Similarity=0.251 Sum_probs=46.5
Q ss_pred cEEEEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchH
Q 003283 288 ELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (834)
Q Consensus 288 kvavVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~ 364 (834)
++..|+||||.||||+ ...||. ++|+ .|+++++..++++... | .-.++|.|.. ..+
T Consensus 25 ~~~aiIlAaG~gtRl~plt~~~pK~--l~~i-----~gkpli~~~l~~l~~~--------g---~~~i~vv~~~---~~~ 83 (254)
T 1jyk_A 25 RVKAIILAAGLGTRLRPLTENTPKA--LVQV-----NQKPLIEYQIEFLKEK--------G---INDIIIIVGY---LKE 83 (254)
T ss_dssp CCEEEEEECSCCGGGTTTTSSSCGG--GCEE-----TTEEHHHHHHHHHHHT--------T---CCCEEEEECT---TGG
T ss_pred CceEEEECCCCcccCCcccCCCCCE--EeeE-----CCEEHHHHHHHHHHHC--------C---CCeEEEEeCC---cHH
Confidence 5678899999999999 578998 9988 7999999999888653 3 1245777765 334
Q ss_pred HHHHHHH
Q 003283 365 RITSLCE 371 (834)
Q Consensus 365 ~T~~fle 371 (834)
....+++
T Consensus 84 ~i~~~~~ 90 (254)
T 1jyk_A 84 QFDYLKE 90 (254)
T ss_dssp GGTHHHH
T ss_pred HHHHHHH
Confidence 4445544
No 49
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}
Probab=95.01 E-value=0.0052 Score=63.71 Aligned_cols=61 Identities=20% Similarity=0.339 Sum_probs=43.4
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003283 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (834)
Q Consensus 291 vVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (834)
+|+||||.||||+ .+.||- ++|+ .||+++++.++++... .| .-.++|.+.. .++ +.
T Consensus 2 ~iIlAaG~GtRl~plt~~~PK~--llpv-----~gkpli~~~l~~l~~~-------~g---i~~iivv~~~---~~~-~~ 60 (255)
T 4evw_A 2 IVIPMAGMSSRFFKAGYTQPKY--MLEA-----HGQTLFEHSVNSFAAY-------FA---STPFLFIVRN---VYD-TA 60 (255)
T ss_dssp EEEECCSCCHHHHHTTCCSCGG--GCEE-----TTEEHHHHHHGGGGGG-------TT---TSCEEEEEES---STT-HH
T ss_pred EEEEcCCCCcccccCCCCCCcc--ccEE-----CCeEHHHHHHHHHhcc-------CC---CceEEEEECc---hhh-hH
Confidence 5789999999996 477999 9998 7999999998887541 23 2245566665 233 55
Q ss_pred HHHHH
Q 003283 368 SLCER 372 (834)
Q Consensus 368 ~fle~ 372 (834)
+++++
T Consensus 61 ~~~~~ 65 (255)
T 4evw_A 61 VFVRE 65 (255)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 56654
No 50
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}
Probab=94.85 E-value=0.02 Score=60.12 Aligned_cols=64 Identities=20% Similarity=0.335 Sum_probs=49.1
Q ss_pred cEEEEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchH
Q 003283 288 ELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~ 364 (834)
.+..|+||||.||||+- ..||- ++|+ .|++++++.++++... | .-.++|.|+. ..+
T Consensus 8 ~~~avIlAaG~gtRl~plt~~~pK~--ll~i-----~gkpli~~~l~~l~~~--------g---i~~i~vv~~~---~~~ 66 (302)
T 2e3d_A 8 VKKAVIPVAGLGTRMLPATKAIPKE--MLPL-----VDKPLIQYVVNECIAA--------G---ITEIVLVTHS---SKN 66 (302)
T ss_dssp CCEEEEECCSCCGGGTTTTSSSCGG--GCEE-----TTEEHHHHHHHHHHHT--------T---CCEEEEEECG---GGH
T ss_pred ccEEEEECCcCcccCCccccCCCce--eeEE-----CCeEHHHHHHHHHHHC--------C---CCEEEEEeCC---CHH
Confidence 35678899999999984 56998 9998 7899999999888652 3 1256777876 567
Q ss_pred HHHHHHHH
Q 003283 365 RITSLCER 372 (834)
Q Consensus 365 ~T~~fle~ 372 (834)
.+.+++.+
T Consensus 67 ~i~~~~~~ 74 (302)
T 2e3d_A 67 SIENHFDT 74 (302)
T ss_dssp HHHHHHSC
T ss_pred HHHHHHhc
Confidence 77777764
No 51
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}
Probab=94.82 E-value=0.0031 Score=62.69 Aligned_cols=50 Identities=16% Similarity=0.251 Sum_probs=39.6
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCC
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~ 358 (834)
++..|+||||.||||| .||. ++|+ .|+++++..++++... .-.++|-|..
T Consensus 14 ~~~~iILA~G~g~Rmg--~~K~--ll~i-----~g~pll~~~l~~l~~~------------~~~i~vv~~~ 63 (201)
T 2e8b_A 14 VNTCYVLAGGKSKRFG--EDKL--LYEI-----KGKKVIERVYETAKSV------------FKEVYIVAKD 63 (201)
T ss_dssp CCEEEEEEESSCCCCS--TTHH--HHHH-----HHHHHHHHHHHHHHTT------------CSEEEEEESC
T ss_pred CceEEEECCCCCccCC--CCcc--cceE-----CceEHHHHHHHHHHHh------------CCEEEEEeCc
Confidence 4678999999999999 7898 9888 6899999988877442 1256777776
No 52
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*
Probab=94.74 E-value=0.011 Score=59.64 Aligned_cols=42 Identities=17% Similarity=0.224 Sum_probs=29.2
Q ss_pred cCcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 003283 286 LPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (834)
Q Consensus 286 L~kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (834)
..++..|+||||.|||||-. ||. ++|+ .|+++++..++++..
T Consensus 16 m~~~~~iIlA~G~g~R~~~~-~K~--l~~i-----~g~pli~~~l~~l~~ 57 (232)
T 2xme_A 16 IKLMKAVILAAGLGTRLGGV-PKP--LVRV-----GGCEIILRTMKLLSP 57 (232)
T ss_dssp CCCEEEEEEECC------CC-CGG--GCEE-----TTEEHHHHHHHHHGG
T ss_pred cccceEEEECCcCcCcCCCC-CcE--EeEE-----CCEEHHHHHHHHHHH
Confidence 44678899999999999744 998 9998 799999998877643
No 53
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}
Probab=94.61 E-value=0.021 Score=59.90 Aligned_cols=64 Identities=16% Similarity=0.278 Sum_probs=48.7
Q ss_pred cEEEEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchH
Q 003283 288 ELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~ 364 (834)
.+..|+||||.||||+- ..||- ++|+ .|+++++..++++... | .-.++|.|.. ..+
T Consensus 14 ~~~avIlAaG~gtRl~plt~~~pK~--ll~i-----~gkpli~~~l~~l~~~--------g---~~~i~vv~~~---~~~ 72 (297)
T 2ux8_A 14 LRKAVFPVAGLGTRFLPATKAMPKE--MLPV-----VDRPLIQYAVDEAVEA--------G---IEQMIFVTGR---GKS 72 (297)
T ss_dssp CCEEEEEECCCCGGGTTTTSSSCGG--GCEE-----TTEEHHHHHHHHHHHT--------T---CCEEEEEECT---TCH
T ss_pred ccEEEEECCCCccccCccccCCCce--eeeE-----CCeEHHHHHHHHHHhC--------C---CCEEEEEeCC---CHH
Confidence 56778899999999984 67998 9998 7899999999888652 3 1246777776 466
Q ss_pred HHHHHHHH
Q 003283 365 RITSLCER 372 (834)
Q Consensus 365 ~T~~fle~ 372 (834)
...+++.+
T Consensus 73 ~i~~~~~~ 80 (297)
T 2ux8_A 73 ALEDHFDI 80 (297)
T ss_dssp HHHHHTSC
T ss_pred HHHHHHhh
Confidence 77777653
No 54
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=94.27 E-value=0.024 Score=60.47 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=46.4
Q ss_pred EEEEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHH
Q 003283 289 LGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 365 (834)
Q Consensus 289 vavVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~ 365 (834)
+.+|+||||.||||+- ..||- ++|+ .|+++++..++++... | .-.++|.|+. ..+.
T Consensus 13 ~~aVIlAaG~gtRl~plt~~~pK~--ll~i-----~gkpli~~~l~~l~~~--------g---i~~iivv~~~---~~~~ 71 (323)
T 2pa4_A 13 KTVVVPAAGLGTRFLPATKTVPKE--LLPV-----VDTPGIELIAAEAAEL--------G---ATRLAIITAP---NKAG 71 (323)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGG--GCEE-----TTEEHHHHHHHHHHHT--------T---CCEEEEEECT---TCHH
T ss_pred eEEEEECCCCccccCccccCCCce--eeeE-----CCEEHHHHHHHHHHhC--------C---CCEEEEEecC---cHHH
Confidence 4578899999999985 67998 9998 6899999999887642 3 1246777776 4566
Q ss_pred HHHHHH
Q 003283 366 ITSLCE 371 (834)
Q Consensus 366 T~~fle 371 (834)
..++|.
T Consensus 72 i~~~~~ 77 (323)
T 2pa4_A 72 VLAHFE 77 (323)
T ss_dssp HHHTTS
T ss_pred HHHHHh
Confidence 665543
No 55
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*
Probab=94.16 E-value=0.022 Score=61.65 Aligned_cols=63 Identities=17% Similarity=0.191 Sum_probs=43.8
Q ss_pred EEEEecCCccccCC----CCCCCCCceeeccccCCCC-CcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchH
Q 003283 290 GEIYPLGGSADRLG----LVDHETGECLPAAMLPYCG-RTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (834)
Q Consensus 290 avVlLAGGlGTRLG----~~~pKgg~~lpV~l~p~sg-kTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~ 364 (834)
..|+||||.||||+ ...||- ++|+ .| ++++|..++++..+. | + -.++|.|.. ...+
T Consensus 3 ~~VILAgG~GtRl~Pls~~~~pK~--ll~l-----~g~~pli~~~l~~l~~~~-------~--~-~~iivvt~~--~~~~ 63 (336)
T 2x65_A 3 KALILAGGSGERFWPLSTPETPKQ--FLKL-----FGNKSLMRWTFERVLEEM-------D--P-KDVIVVTHK--DYVE 63 (336)
T ss_dssp EEEEECCCBCGGGTTTSCTTCBGG--GCCC-----BTTBCHHHHHHHHHHTTC-------C--G-GGEEEEEEG--GGHH
T ss_pred EEEEECCCCCccCCCCcCCCCCce--EEEC-----CCCCcHHHHHHHHHhccC-------C--C-CcEEEEcCh--HHHH
Confidence 46789999999998 568998 9888 56 999999998886531 2 1 234666665 2234
Q ss_pred HHHHHHH
Q 003283 365 RITSLCE 371 (834)
Q Consensus 365 ~T~~fle 371 (834)
.+.+++.
T Consensus 64 ~i~~~l~ 70 (336)
T 2x65_A 64 RTKKELP 70 (336)
T ss_dssp HHHHHCT
T ss_pred HHHHHhh
Confidence 4555544
No 56
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*
Probab=93.89 E-value=0.028 Score=62.01 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=35.9
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 003283 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (834)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (834)
+++.|+||||.|||||...||. ++|+ .|+++++..++++.+
T Consensus 3 ki~aIILAaG~ssRmg~~~pK~--ll~l-----~GkPLi~~~l~~l~~ 43 (371)
T 1w55_A 3 EMSLIMLAAGNSTRFNTKVKKQ--FLRL-----GNDPLWLYATKNLSS 43 (371)
T ss_dssp CEEEEEECCSCCTTTCSSSCGG--GCEE-----BTEEHHHHHHHHHHT
T ss_pred ccEEEEECCCCCccCCCCCCcc--eEEE-----CCeEHHHHHHHHHHc
Confidence 4778999999999999777998 9888 799999999888754
No 57
>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20
Probab=92.87 E-value=0.047 Score=59.02 Aligned_cols=41 Identities=27% Similarity=0.300 Sum_probs=34.3
Q ss_pred EEEEEecCCccccCC----CCCCCCCceeeccccCCCC-CcchHHHHHHHHHH
Q 003283 289 LGEIYPLGGSADRLG----LVDHETGECLPAAMLPYCG-RTLLEGLIRDLQAR 336 (834)
Q Consensus 289 vavVlLAGGlGTRLG----~~~pKgg~~lpV~l~p~sg-kTlLql~~e~I~~l 336 (834)
+..|+||||.||||. ...||- ++|+ .| ++++|..++++...
T Consensus 3 m~~VILAgG~GtRl~Pls~~~~pK~--ll~l-----~G~~pli~~~l~~l~~~ 48 (337)
T 2cu2_A 3 TYALVMAGGRGERLWPLSREDRPKP--FLPL-----FEGKTLLEATLERLAPL 48 (337)
T ss_dssp EEEEEECCCCCGGGTTTCBTTBCGG--GCBC-----GGGCBHHHHHHHHHTTT
T ss_pred eEEEEEcCCCcccCCccCCCCCCce--EEEc-----CCCChHHHHHHHHHhCc
Confidence 567899999999997 467998 9888 56 99999999888553
No 58
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19
Probab=92.28 E-value=0.07 Score=53.95 Aligned_cols=39 Identities=33% Similarity=0.537 Sum_probs=32.4
Q ss_pred EEEEEecCCc---cccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 003283 289 LGEIYPLGGS---ADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (834)
Q Consensus 289 vavVlLAGGl---GTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (834)
+..|+||||. |+||| ..||. ++|+ .|+++++..++++..
T Consensus 3 ~~~vIlAaG~tRl~~r~~-~~~K~--l~~i-----~g~pll~~~l~~l~~ 44 (232)
T 2dpw_A 3 PSAIVLAGGKEAWAERFG-VGSKA--LVPY-----RGRPMVEWVLEALYA 44 (232)
T ss_dssp CEEEEECCCBCSGGGTTT-CSBGG--GSEE-----TTEETHHHHHHHHHH
T ss_pred eeEEEECCCCCccccccC-CCCce--eeEE-----CCEEHHHHHHHHHHh
Confidence 5678899999 77776 36898 9888 799999999988865
No 59
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Probab=91.98 E-value=0.064 Score=58.16 Aligned_cols=60 Identities=23% Similarity=0.326 Sum_probs=45.3
Q ss_pred EEEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHH
Q 003283 290 GEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (834)
Q Consensus 290 avVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~g~~~~IPl~IMTS~~~~Th~~T 366 (834)
..|+||||.|+||+ ...||. ++|+ .|++++++.++++.+. | .-.++|.|+. . .
T Consensus 2 ~aiIlA~G~g~R~~plt~~~~K~--ll~i-----~g~pli~~~l~~l~~~--------~---~~~i~vv~~~--~----i 57 (401)
T 2ggo_A 2 KAFILAAGSGERLEPITHTRPKA--FVPI-----LSKPLIEYQIEYLRKC--------G---IRDITVIVSS--K----N 57 (401)
T ss_dssp EEEEECCCCCGGGTTGGGTSCGG--GCEE-----TTEEHHHHHHHHHHHT--------T---CCEEEEEECG--G----G
T ss_pred eEEEEcCcCccccCcccCCCCcc--eeeE-----CCEeHHHHHHHHHHHC--------C---CCEEEEEeCH--H----H
Confidence 36889999999997 467998 9998 7999999999888653 2 1246777776 2 6
Q ss_pred HHHHHHh
Q 003283 367 TSLCERL 373 (834)
Q Consensus 367 ~~fle~n 373 (834)
.+++++.
T Consensus 58 ~~~~~~~ 64 (401)
T 2ggo_A 58 KEYFEKK 64 (401)
T ss_dssp HHHHHHH
T ss_pred HHHhhcc
Confidence 6777653
No 60
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=21.31 E-value=2.9e+02 Score=26.47 Aligned_cols=61 Identities=10% Similarity=-0.032 Sum_probs=38.3
Q ss_pred EEeeCceeeecCCCCC-----Ccccceeee---eEEEEEecceeeEec----------ceeEecceEEEecCCeeEEee
Q 003283 763 KVLNKGIDWDCGDNTY-----WKHDVQWFE---ALKVILHGNAEFEAS----------DVTLQGNHVFEVPDGHKLKIT 823 (834)
Q Consensus 763 ~V~N~G~~~~~~~~~~-----~~~e~~r~~---~~~i~~~~~~ef~a~----------~v~~~g~~~~~vp~g~~~~~~ 823 (834)
.+.|.||......... --....++. =+=|++.|...++.. .|+++=..+|+||-|..=+-.
T Consensus 19 ~~~~~~W~Va~~n~~~~~~~~~i~~~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVPkGveH~p~ 97 (140)
T 3d0j_A 19 VYKNEKWLVCIKNWKPDNDIEGIAHLEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPAECWFYSI 97 (140)
T ss_dssp EEECSSEEEEEEECCGGGBTTTCCEEEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEECTTCEEEEE
T ss_pred EEEcCCEEEEEEeccCcCCcccCHhhccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeCCCccCccc
Confidence 4569999988642211 011112221 234666777766655 699999999999999876644
Done!