BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003284
(834 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7XYY2|MED25_ARATH Mediator of RNA polymerase II transcription subunit 25
OS=Arabidopsis thaliana GN=MED25 PE=1 SV=1
Length = 836
Score = 875 bits (2261), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/693 (66%), Positives = 550/693 (79%), Gaps = 26/693 (3%)
Query: 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSY 63
KQLIV EGTAA+GPYWQ+IVSDYLEKIIR FC +EL G++ S VELSLV FN+HGSY
Sbjct: 6 KQLIVVAEGTAALGPYWQTIVSDYLEKIIRSFCGSELNGERNPVSTVELSLVIFNSHGSY 65
Query: 64 CACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNV 123
CACLVQRSGWT+DVDIFLHWLS+I F GGGFN+ A AEGL+EALMMFS P Q Q +
Sbjct: 66 CACLVQRSGWTRDVDIFLHWLSSIQFGGGGFNEVATAEGLAEALMMFS--PPSGQAQPSN 123
Query: 124 DGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSL 183
D +RHCIL+ ASNPH LPTPVYRP++QN+++NEN +AQAESRLSDAETVA F +CSVSL
Sbjct: 124 DLKRHCILITASNPHILPTPVYRPRLQNVERNENGDAQAESRLSDAETVASYFAKCSVSL 183
Query: 184 SVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAALSRPGVANL 243
SV+CPKQLP + A+YNA K N ++AD +D +KN +LVLISENF+EA AALS NL
Sbjct: 184 SVVCPKQLPTIRALYNAGKPNQQSADLSIDTAKNTFYLVLISENFVEACAALSH-SATNL 242
Query: 244 APNQNPVKMD---IAPVTSVTGPAPTSIPSVNGI--NRPPISVGNVPTATVKVEPSTVTS 298
Q+PVK+D +AP VTG P + S NG NR P+SVG VPTATVKVEPSTVTS
Sbjct: 243 PQTQSPVKVDRATVAPSIPVTGQPPAPVSSANGPIQNRQPVSVGPVPTATVKVEPSTVTS 302
Query: 299 MVNGPTFPHIPSVPRPASQGVPSLQTSSPSSTSQEMITSGDSVPEVKPLV-SGMSQPLRP 357
M P+FPHIP+V RPA+Q +PS+QTSS S SQ+M+++ ++ P++KP+V SGM+ PLR
Sbjct: 303 MAPVPSFPHIPAVARPATQAIPSIQTSSASPVSQDMVSNAENAPDIKPVVVSGMTPPLRT 362
Query: 358 MAPAAANVNILNNLSQARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPT 417
P ANVN+LNNLSQ RQVM++AA + S+GQ+ +AMHMSNMIS+GMA+S+P
Sbjct: 363 GPPGGANVNLLNNLSQVRQVMSSAA----LAGAASSVGQSAVAMHMSNMISTGMATSLPP 418
Query: 418 SQPVFSSAQSGITSIGGSGTLTGTSQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQG 477
SQ VFS+ Q GITS+ GSG L G++Q Q+ G N+ S + + SN +SQPM
Sbjct: 419 SQTVFSTGQQGITSMAGSGALMGSAQTGQSPGPNNAFSPQTTSNVASNLGVSQPMQ---- 474
Query: 478 GASMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSG 537
GM+QG+HSG M+Q GISMNQNMMSGLG VSSGTG M+PTPG+ QQAQSG
Sbjct: 475 --------GMNQGSHSGA-MMQGGISMNQNMMSGLGQGNVSSGTGGMMPTPGVGQQAQSG 525
Query: 538 MQPLSVNNNTAVNMQLSQQTSSALHSSQSKYVKVWEGSLSGQRQGQPVFITKLEGYRSAS 597
+Q L +N++A NMQLSQ +S A+ +SQSKYVKVWEG+LSGQRQGQPV IT+LEGYRSAS
Sbjct: 526 IQQLGGSNSSAPNMQLSQPSSGAMQTSQSKYVKVWEGNLSGQRQGQPVLITRLEGYRSAS 585
Query: 598 ASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQ 657
AS++LAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAM+QHGFLGQLQ+KKLCAVIQ
Sbjct: 586 ASDSLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMSQHGFLGQLQDKKLCAVIQ 645
Query: 658 LPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQI 690
LPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQI
Sbjct: 646 LPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQI 678
>sp|Q6GP15|MED25_XENLA Mediator of RNA polymerase II transcription subunit 25 OS=Xenopus
laevis GN=med25 PE=2 SV=1
Length = 801
Score = 93.6 bits (231), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 104/243 (42%), Gaps = 31/243 (12%)
Query: 6 LIVAVEGTAAMGPYWQSIVSDYLEKIIRCF-----CVNELAGQKTSASNVELSLVTFNTH 60
++ +EGTA +GPY++S+ YL I F + G + SLV FNT
Sbjct: 14 VVFVIEGTANLGPYFESLRKHYLLPAIEYFNGGPPAETDFGG---DYGGTQYSLVVFNTV 70
Query: 61 GSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQN 119
VQ T F+ WL +I F GGG + IAEGLS AL +F + +
Sbjct: 71 DCAPESYVQCHAPTSSAYEFVQWLDSIKFMGGGGESCSLIAEGLSTALQLF----DDFKK 126
Query: 120 QQNVDGQRH--CILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFV 177
+ GQ H CIL+ S P+ LP E+ S + E + +
Sbjct: 127 MREQIGQTHKVCILICNSPPYLLPA---------------VESTTYSGYT-TENLVQKIG 170
Query: 178 QCSVSLSVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAALSR 237
+ + S+I P++LP L ++ A P D S++P ++L+ + A S
Sbjct: 171 ERGIHFSIISPRKLPALRTLFEKAMPVGLIEPQPKDYSQDPRHMILVRGMVLPVGGATSV 230
Query: 238 PGV 240
PGV
Sbjct: 231 PGV 233
>sp|A4IHD9|MED25_XENTR Mediator of RNA polymerase II transcription subunit 25 OS=Xenopus
tropicalis GN=med25 PE=2 SV=1
Length = 805
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 31/243 (12%)
Query: 6 LIVAVEGTAAMGPYWQSIVSDYLEKIIRCF-----CVNELAGQKTSASNVELSLVTFNTH 60
++ +EGTA +GPY++S+ YL I F + G + SLV FNT
Sbjct: 15 VVFVIEGTANLGPYFESLRKHYLLPAIEYFNGGPPAETDFGG---DYGGTQYSLVVFNTV 71
Query: 61 GSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQN 119
VQ T F+ WL +I F GGG + IAEGLS AL +F + +
Sbjct: 72 DCAPESYVQCHAPTSSAYEFVQWLDSIRFMGGGGESCSLIAEGLSTALQLF----DDFKK 127
Query: 120 QQNVDGQRH--CILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFV 177
+ GQ H CIL+ S P+ LP E+ S + E + +
Sbjct: 128 MREQIGQTHKVCILICNSPPYLLPA---------------VESTTYSGYT-TENLVQKIG 171
Query: 178 QCSVSLSVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAALSR 237
+ + SVI P++LP L ++ A P D S++P ++L+ + A S
Sbjct: 172 ERGIHFSVISPRKLPALRTLFEKAMPVGLIEPQPKDYSQDPRHMILVRGMVLPVGGATSV 231
Query: 238 PGV 240
PGV
Sbjct: 232 PGV 234
>sp|A2VE44|MED25_BOVIN Mediator of RNA polymerase II transcription subunit 25 OS=Bos
taurus GN=MED25 PE=2 SV=1
Length = 746
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 100/232 (43%), Gaps = 37/232 (15%)
Query: 5 QLIVAVEGTAAMGPYWQSIVSDYLEKIIRCF-----CVNELAGQKTSASNVELSLVTFNT 59
++ +EGTA +GPY++ + YL I F + G + SLV FNT
Sbjct: 17 DVVFVIEGTANLGPYFEGLRKHYLLPAIEYFNGGPPAETDFGGDY---GGTQYSLVVFNT 73
Query: 60 HGSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQ 118
VQ T F+ WL I F GGG + IAEGLS AL +F + +
Sbjct: 74 VDCAPESYVQCHAPTSSAYEFVTWLDGIKFMGGGGESCSLIAEGLSTALQLF----DDFK 129
Query: 119 NQQNVDGQRH--CILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSF 176
+ GQ H C+L+ S P+ LP E+ S + ET+ +
Sbjct: 130 KMREQIGQTHRVCLLICNSPPYLLPA---------------VESTTYSGCT-TETLVQKI 173
Query: 177 VQCSVSLSVICPKQLPKLTAIYNAAKRNPRA----ADPPVDNSKNPHFLVLI 224
+ + S++ P++LP L ++ A P A PP D S++P +VL+
Sbjct: 174 GERGIYFSIVSPRKLPALRLLFEKAA--PPAMLEPLQPPADVSQDPRHMVLV 223
>sp|Q8VCB2|MED25_MOUSE Mediator of RNA polymerase II transcription subunit 25 OS=Mus
musculus GN=Med25 PE=1 SV=1
Length = 745
Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 100/231 (43%), Gaps = 35/231 (15%)
Query: 5 QLIVAVEGTAAMGPYWQSIVSDYLEKIIRCF-----CVNELAGQKTSASNVELSLVTFNT 59
++ +EGTA +GPY++ + YL I F + G + SLV FNT
Sbjct: 17 DVVFVIEGTANLGPYFEELRKHYLLPAIEYFNGGPPAETDFGGDY---GGTQYSLVVFNT 73
Query: 60 HGSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQ 118
VQ T F+ WL I F GGG + IAEGLS AL +F + +
Sbjct: 74 VDCAPESYVQCHAPTSSAYEFVTWLDGIKFMGGGGESCSLIAEGLSTALQLF----DDFK 129
Query: 119 NQQNVDGQRH--CILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSF 176
+ GQ H C+L+ S P+ LP E+ S + E++ +
Sbjct: 130 KMREQIGQTHRVCLLICNSPPYLLPA---------------VESTTYSGCT-TESLVQKI 173
Query: 177 VQCSVSLSVICPKQLPKLTAIYNAAKRNPRAADP---PVDNSKNPHFLVLI 224
+ + S++ P++LP L ++ A P +P P D S++P +VL+
Sbjct: 174 GERGIHFSIVSPRKLPALRLLFEKAA-PPALLEPLQQPADVSQDPRHMVLV 223
>sp|Q71SY5|MED25_HUMAN Mediator of RNA polymerase II transcription subunit 25 OS=Homo
sapiens GN=MED25 PE=1 SV=2
Length = 747
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 99/232 (42%), Gaps = 37/232 (15%)
Query: 5 QLIVAVEGTAAMGPYWQSIVSDYLEKIIRCF-----CVNELAGQKTSASNVELSLVTFNT 59
++ +EGTA +GPY++ + YL I F + G + SLV FNT
Sbjct: 17 DVVFVIEGTANLGPYFEGLRKHYLLPAIEYFNGGPPAETDFGGDY---GGTQYSLVVFNT 73
Query: 60 HGSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQ 118
VQ T F+ WL I F GGG + IAEGLS AL +F + +
Sbjct: 74 VDCAPESYVQCHAPTSSAYEFVTWLDGIKFMGGGGESCSLIAEGLSTALQLF----DDFK 129
Query: 119 NQQNVDGQRH--CILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSF 176
+ GQ H C+L+ S P+ LP E+ S + E + +
Sbjct: 130 KMREQIGQTHRVCLLICNSPPYLLPA---------------VESTTYSGCT-TENLVQQI 173
Query: 177 VQCSVSLSVICPKQLPKLTAIYNAAKRNPRA----ADPPVDNSKNPHFLVLI 224
+ + S++ P++LP L ++ K P A PP D S++P +VL+
Sbjct: 174 GERGIHFSIVSPRKLPALRLLFE--KAAPPALLEPLQPPTDVSQDPRHMVLV 223
>sp|Q9VDR1|MED25_DROME Mediator of RNA polymerase II transcription subunit 25
OS=Drosophila melanogaster GN=MED25 PE=2 SV=1
Length = 863
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 97/236 (41%), Gaps = 28/236 (11%)
Query: 5 QLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSL---VTFNTHG 61
++ +EG+A G Y + ++Y+ + F + ++ + +L V + T
Sbjct: 10 DVVFVIEGSAINGAYINELKTNYILPTLEHFTTGSIDEREYLIAERFATLYGIVVYRTAA 69
Query: 62 SYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQNQ 120
+ + G + + +P GGG A +AEG + A F Q
Sbjct: 70 NLLEPVCSTYGPFLQPQKVMETIERLPLVGGGMESCAHMAEGFAAAHGCFDDISERRQLL 129
Query: 121 QNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCS 180
QRHCIL+ S P+ +PT E+ + +S E +A F +
Sbjct: 130 DQTSVQRHCILICNSPPYQMPT------------TESWKYPGKS----CEQLAALFNERK 173
Query: 181 VSLSVICPKQLPKLTAIYNAAKRNPRAADPPV---DNSKNPHFLVLISENFMEARA 233
++LS+I P+++P L ++ A D P+ + +KN LVL+ ++ RA
Sbjct: 174 INLSIIAPRKMPVLFKLFMKAD-----GDQPITSKNYAKNIRHLVLLKGYSLKERA 224
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.125 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 298,473,552
Number of Sequences: 539616
Number of extensions: 12842162
Number of successful extensions: 261547
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1778
Number of HSP's successfully gapped in prelim test: 1782
Number of HSP's that attempted gapping in prelim test: 67412
Number of HSP's gapped (non-prelim): 58345
length of query: 834
length of database: 191,569,459
effective HSP length: 126
effective length of query: 708
effective length of database: 123,577,843
effective search space: 87493112844
effective search space used: 87493112844
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)