Query 003284
Match_columns 834
No_of_seqs 330 out of 1362
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 20:34:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003284.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003284hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11265 Med25_VWA: Mediator c 100.0 2.3E-65 4.9E-70 526.1 22.0 210 3-228 13-226 (226)
2 cd01480 vWA_collagen_alpha_1-V 99.2 1.3E-09 2.8E-14 109.7 17.5 154 3-199 2-161 (186)
3 cd01482 vWA_collagen_alphaI-XI 99.1 4E-09 8.7E-14 103.7 18.4 162 4-227 1-164 (164)
4 cd01469 vWA_integrins_alpha_su 99.1 6.7E-09 1.4E-13 103.9 18.2 164 4-227 1-171 (177)
5 PF13519 VWA_2: von Willebrand 99.0 2E-09 4.4E-14 103.2 12.0 144 5-204 1-154 (172)
6 cd01481 vWA_collagen_alpha3-VI 99.0 1.7E-08 3.7E-13 100.5 18.8 149 4-199 1-151 (165)
7 cd01450 vWFA_subfamily_ECM Von 99.0 1E-08 2.3E-13 97.7 16.6 149 4-200 1-154 (161)
8 cd01472 vWA_collagen von Wille 99.0 1.3E-08 2.8E-13 99.7 17.6 151 4-202 1-154 (164)
9 cd01473 vWA_CTRP CTRP for CS 98.9 8E-08 1.7E-12 98.1 18.2 154 4-204 1-162 (192)
10 cd01475 vWA_Matrilin VWA_Matri 98.8 7.2E-08 1.6E-12 100.0 16.2 150 3-201 2-155 (224)
11 cd01474 vWA_ATR ATR (Anthrax T 98.8 7.2E-08 1.6E-12 96.8 15.2 138 3-189 4-143 (185)
12 cd01453 vWA_transcription_fact 98.8 1.8E-07 3.9E-12 94.8 17.2 150 4-204 4-161 (183)
13 cd01476 VWA_integrin_invertebr 98.8 3E-07 6.6E-12 89.5 17.7 152 4-202 1-155 (163)
14 cd01477 vWA_F09G8-8_type VWA F 98.8 1.8E-07 4E-12 95.8 15.3 159 3-201 19-185 (193)
15 PF00092 VWA: von Willebrand f 98.7 4E-07 8.6E-12 88.5 14.5 148 5-199 1-154 (178)
16 cd01471 vWA_micronemal_protein 98.6 9.3E-07 2E-11 88.4 15.6 141 4-190 1-147 (186)
17 cd00198 vWFA Von Willebrand fa 98.6 1.9E-06 4E-11 80.5 15.9 138 4-190 1-141 (161)
18 smart00187 INB Integrin beta s 98.5 3.1E-06 6.6E-11 95.7 17.2 174 4-199 100-310 (423)
19 cd01456 vWA_ywmD_type VWA ywmD 98.4 7.3E-06 1.6E-10 83.8 16.6 149 4-204 21-195 (206)
20 cd01467 vWA_BatA_type VWA BatA 98.4 5.2E-06 1.1E-10 82.0 14.3 137 3-190 2-142 (180)
21 smart00327 VWA von Willebrand 98.4 2E-05 4.4E-10 75.9 18.1 140 3-190 1-144 (177)
22 cd01470 vWA_complement_factors 98.4 6.1E-06 1.3E-10 83.7 14.2 122 4-138 1-125 (198)
23 cd01452 VWA_26S_proteasome_sub 98.3 2.1E-05 4.6E-10 80.7 17.4 148 5-203 5-163 (187)
24 PTZ00441 sporozoite surface pr 98.3 1E-05 2.3E-10 94.4 15.8 138 3-190 42-188 (576)
25 PRK13685 hypothetical protein; 98.3 2.6E-05 5.7E-10 85.8 17.6 158 4-204 89-269 (326)
26 PF13768 VWA_3: von Willebrand 98.3 1.2E-05 2.7E-10 77.9 13.0 145 4-203 1-151 (155)
27 cd01451 vWA_Magnesium_chelatas 98.3 2.9E-05 6.3E-10 77.7 15.6 152 6-205 3-161 (178)
28 cd01463 vWA_VGCC_like VWA Volt 98.2 1.4E-05 3E-10 80.7 12.8 115 4-137 14-135 (190)
29 cd01465 vWA_subgroup VWA subgr 98.2 4.7E-05 1E-09 74.2 15.5 149 5-204 2-156 (170)
30 COG1240 ChlD Mg-chelatase subu 98.2 3.3E-05 7.1E-10 82.4 15.1 157 4-205 79-241 (261)
31 TIGR03436 acidobact_VWFA VWFA- 98.2 5E-05 1.1E-09 81.8 16.4 153 4-204 54-234 (296)
32 cd01454 vWA_norD_type norD typ 98.1 5.2E-05 1.1E-09 75.3 14.7 157 5-201 2-169 (174)
33 cd01461 vWA_interalpha_trypsin 98.1 5.9E-05 1.3E-09 73.4 13.8 148 3-204 2-155 (171)
34 cd01466 vWA_C3HC4_type VWA C3H 98.1 5.1E-05 1.1E-09 74.4 13.3 145 4-204 1-150 (155)
35 cd01464 vWA_subfamily VWA subf 98.1 3.7E-05 7.9E-10 76.6 11.6 154 1-198 1-158 (176)
36 PRK13406 bchD magnesium chelat 98.0 0.00017 3.6E-09 85.6 17.4 160 3-204 401-563 (584)
37 TIGR02031 BchD-ChlD magnesium 98.0 0.00011 2.4E-09 87.3 15.8 165 4-205 408-577 (589)
38 cd01458 vWA_ku Ku70/Ku80 N-ter 97.9 7E-05 1.5E-09 77.5 10.9 154 5-190 3-172 (218)
39 cd01462 VWA_YIEM_type VWA YIEM 97.8 0.00055 1.2E-08 66.2 14.8 132 4-189 1-133 (152)
40 TIGR02442 Cob-chelat-sub cobal 97.7 0.00061 1.3E-08 81.7 16.6 158 3-204 465-628 (633)
41 PF00362 Integrin_beta: Integr 97.7 0.00031 6.7E-09 80.5 13.4 174 4-199 103-313 (426)
42 cd01460 vWA_midasin VWA_Midasi 97.6 0.00087 1.9E-08 72.5 13.4 136 3-191 60-205 (266)
43 TIGR00868 hCaCC calcium-activa 97.6 0.0014 3.1E-08 80.5 16.6 107 3-138 304-417 (863)
44 TIGR03788 marine_srt_targ mari 97.5 0.0012 2.6E-08 78.5 13.7 107 4-136 272-380 (596)
45 cd01457 vWA_ORF176_type VWA OR 97.3 0.0029 6.2E-08 64.6 12.6 110 3-138 2-120 (199)
46 PF03731 Ku_N: Ku70/Ku80 N-ter 97.2 0.0089 1.9E-07 61.9 15.5 144 6-188 2-172 (224)
47 cd01455 vWA_F11C1-5a_type Von 97.1 0.013 2.8E-07 60.7 14.5 153 4-203 1-167 (191)
48 PF04056 Ssl1: Ssl1-like; Int 96.9 0.022 4.7E-07 59.2 14.2 160 9-231 1-167 (193)
49 PF04811 Sec23_trunk: Sec23/Se 96.7 0.017 3.7E-07 60.9 11.9 177 6-205 6-220 (243)
50 KOG3598 Thyroid hormone recept 96.7 0.00053 1.1E-08 85.2 0.6 23 177-202 1709-1731(2220)
51 KOG3598 Thyroid hormone recept 96.1 0.0013 2.8E-08 82.0 -0.3 11 523-533 1995-2005(2220)
52 COG4245 TerY Uncharacterized p 96.0 0.035 7.5E-07 57.4 9.4 160 1-202 1-163 (207)
53 TIGR00578 ku70 ATP-dependent D 95.4 0.13 2.8E-06 61.6 12.5 152 5-190 12-183 (584)
54 cd01468 trunk_domain trunk dom 94.8 0.66 1.4E-05 49.1 14.5 177 5-205 5-218 (239)
55 cd01479 Sec24-like Sec24-like: 94.8 0.48 1E-05 50.6 13.4 176 6-205 6-215 (244)
56 PF06707 DUF1194: Protein of u 94.3 0.85 1.8E-05 48.1 13.5 161 3-202 3-173 (205)
57 PF11498 Activator_LAG-3: Tran 93.8 0.017 3.7E-07 63.9 0.0 17 789-805 427-443 (468)
58 PF05762 VWA_CoxE: VWA domain 93.5 0.48 1.1E-05 49.8 10.2 129 5-189 59-188 (222)
59 PRK10997 yieM hypothetical pro 92.9 1.3 2.9E-05 52.1 13.4 141 4-201 324-470 (487)
60 KOG2807 RNA polymerase II tran 91.9 4 8.7E-05 45.6 14.6 150 4-203 61-217 (378)
61 COG5148 RPN10 26S proteasome r 91.5 3.5 7.6E-05 43.0 12.8 165 5-224 5-171 (243)
62 PF11235 Med25_SD1: Mediator c 91.2 0.27 5.8E-06 49.1 4.4 77 240-323 9-97 (168)
63 TIGR00627 tfb4 transcription f 90.6 4.3 9.4E-05 44.7 13.5 168 6-204 5-203 (279)
64 cd01478 Sec23-like Sec23-like: 88.8 6.9 0.00015 42.7 13.2 114 82-204 121-249 (267)
65 KOG1226 Integrin beta subunit 88.5 2.4 5.1E-05 51.9 10.2 177 4-197 133-340 (783)
66 KOG1984 Vesicle coat complex C 88.1 6 0.00013 49.2 13.1 160 4-187 418-609 (1007)
67 KOG2884 26S proteasome regulat 87.9 13 0.00028 39.8 13.9 180 6-239 6-188 (259)
68 PF03850 Tfb4: Transcription f 86.8 8.6 0.00019 42.3 12.5 169 6-204 4-201 (276)
69 PTZ00395 Sec24-related protein 86.0 4.1 9E-05 52.8 10.6 94 77-187 1054-1151(1560)
70 PF10138 vWA-TerF-like: vWA fo 85.6 13 0.00029 39.2 12.6 145 3-199 1-154 (200)
71 PF09967 DUF2201: VWA-like dom 83.9 2.9 6.4E-05 40.4 6.5 76 6-105 1-78 (126)
72 PF11498 Activator_LAG-3: Tran 82.8 0.39 8.4E-06 53.7 0.0 7 135-141 11-17 (468)
73 PLN00162 transport protein sec 81.7 18 0.00039 45.1 13.7 37 169-205 331-371 (761)
74 COG5151 SSL1 RNA polymerase II 78.6 40 0.00086 37.9 13.4 190 4-255 88-287 (421)
75 COG2425 Uncharacterized protei 78.1 15 0.00032 43.1 10.6 88 4-110 273-360 (437)
76 KOG3768 DEAD box RNA helicase 77.3 5 0.00011 48.0 6.5 116 6-135 4-132 (888)
77 KOG2353 L-type voltage-depende 74.2 15 0.00032 47.5 10.1 191 3-242 225-419 (1104)
78 COG1721 Uncharacterized conser 63.0 61 0.0013 37.4 11.3 76 3-95 224-305 (416)
79 KOG1781 Small Nuclear ribonucl 60.9 13 0.00028 34.9 4.3 48 11-60 39-86 (108)
80 KOG4369 RTK signaling protein 57.6 15 0.00033 47.2 5.3 20 63-82 994-1015(2131)
81 TIGR01651 CobT cobaltochelatas 55.6 1.2E+02 0.0025 37.2 12.0 75 100-199 499-574 (600)
82 TIGR00620 sporelyase spore pho 47.9 1E+02 0.0022 32.8 8.9 132 25-205 9-147 (199)
83 TIGR00670 asp_carb_tr aspartat 45.3 84 0.0018 35.1 8.4 92 63-191 95-187 (301)
84 KOG2326 DNA-binding subunit of 45.2 90 0.002 38.0 8.8 146 3-186 4-162 (669)
85 PRK02102 ornithine carbamoyltr 42.1 86 0.0019 35.6 7.9 92 62-191 100-191 (331)
86 PLN02342 ornithine carbamoyltr 41.6 86 0.0019 35.8 7.8 100 63-201 140-239 (348)
87 PF04285 DUF444: Protein of un 40.2 1.5E+02 0.0032 34.9 9.5 35 3-37 246-280 (421)
88 KOG4369 RTK signaling protein 38.1 35 0.00075 44.2 4.2 7 570-576 1672-1678(2131)
89 PRK14804 ornithine carbamoyltr 36.3 1.5E+02 0.0032 33.3 8.5 94 62-192 96-189 (311)
90 PRK14805 ornithine carbamoyltr 36.0 1.4E+02 0.003 33.4 8.2 91 62-191 92-182 (302)
91 PF11775 CobT_C: Cobalamin bio 35.6 2.7E+02 0.0059 30.0 9.9 20 4-23 13-33 (219)
92 COG5028 Vesicle coat complex C 33.8 5.4E+02 0.012 32.7 13.0 170 5-202 278-478 (861)
93 PRK00779 ornithine carbamoyltr 33.1 1.6E+02 0.0036 32.8 8.2 91 62-191 97-187 (304)
94 PRK00856 pyrB aspartate carbam 32.2 1.4E+02 0.0031 33.4 7.5 93 62-191 99-193 (305)
95 PF13362 Toprim_3: Toprim doma 31.3 99 0.0021 27.9 5.2 36 167-202 58-94 (96)
96 COG4867 Uncharacterized protei 30.6 5.4E+02 0.012 30.7 11.7 151 4-201 464-622 (652)
97 TIGR00658 orni_carb_tr ornithi 30.1 1.9E+02 0.0042 32.2 8.2 90 63-191 94-183 (304)
98 PRK13814 pyrB aspartate carbam 30.0 1.5E+02 0.0033 33.3 7.3 91 65-191 103-195 (310)
99 PRK04284 ornithine carbamoyltr 29.3 2.1E+02 0.0045 32.5 8.3 91 63-191 100-191 (332)
100 TIGR03316 ygeW probable carbam 28.8 2.2E+02 0.0048 32.7 8.5 110 62-200 96-221 (357)
101 KOG0070 GTP-binding ADP-ribosy 27.3 1.4E+02 0.0031 31.2 6.0 84 5-111 87-174 (181)
102 TIGR02877 spore_yhbH sporulati 26.8 2.8E+02 0.006 32.2 8.7 143 2-200 201-345 (371)
103 cd01459 vWA_copine_like VWA Co 25.9 6.5E+02 0.014 27.6 11.0 15 3-17 31-45 (254)
104 PF03599 CdhD: CO dehydrogenas 24.3 5.3E+02 0.012 30.2 10.4 35 168-202 132-166 (386)
105 KOG1985 Vesicle coat complex C 23.8 4.8E+02 0.01 33.3 10.4 192 4-222 295-520 (887)
106 PRK02255 putrescine carbamoylt 23.8 1.7E+02 0.0036 33.4 6.3 94 62-191 96-189 (338)
107 PRK05325 hypothetical protein; 23.5 3.2E+02 0.007 32.0 8.5 35 2-36 221-255 (401)
108 PRK15301 hypothetical protein; 22.2 10 0.00022 39.6 -3.4 59 174-237 53-111 (186)
109 cd01979 Pchlide_reductase_N Pc 22.0 3.1E+02 0.0067 31.5 8.1 28 168-197 168-195 (396)
110 PRK10792 bifunctional 5,10-met 21.9 2.1E+02 0.0045 32.0 6.4 107 52-201 93-203 (285)
111 PRK14173 bifunctional 5,10-met 21.8 2.8E+02 0.0061 31.0 7.4 93 28-141 75-170 (287)
112 PLN02527 aspartate carbamoyltr 21.4 3.5E+02 0.0076 30.3 8.1 92 63-191 96-189 (306)
113 PRK01713 ornithine carbamoyltr 21.3 3.2E+02 0.007 31.0 7.9 92 63-191 101-192 (334)
114 PRK07200 aspartate/ornithine c 20.6 3.8E+02 0.0081 31.3 8.4 99 62-191 113-229 (395)
115 PF12637 TSCPD: TSCPD domain; 20.3 1.2E+02 0.0026 28.2 3.6 33 74-106 54-94 (95)
116 PHA02030 hypothetical protein 20.3 1.3E+02 0.0028 33.8 4.3 57 48-107 70-150 (336)
117 PF12257 DUF3608: Protein of u 20.3 7.3E+02 0.016 27.8 10.1 71 96-192 202-272 (281)
118 PRK12562 ornithine carbamoyltr 20.1 2.2E+02 0.0048 32.3 6.3 93 63-191 100-192 (334)
No 1
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=100.00 E-value=2.3e-65 Score=526.10 Aligned_cols=210 Identities=43% Similarity=0.699 Sum_probs=193.7
Q ss_pred CccEEEEEeccccchHhHHHHHHHHHHHHHHHHhccccccccCC--CCccEEEEEEeecCCCCcccceeeccCCCCHHHH
Q 003284 3 EKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTS--ASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIF 80 (834)
Q Consensus 3 ~~dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~~g~~~~~~~~--~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~f 80 (834)
++|||||||+||+||+||+.||+|||+|+||||++|+++|++++ ..+++||||+|++||||++++|++++||+|+++|
T Consensus 13 ~~~vVfvvEgTAalgpy~~~Lkt~Yl~P~le~f~~g~~~e~~~~~~~~~t~y~LVvf~t~d~~~~~~v~~~g~T~~~~~f 92 (226)
T PF11265_consen 13 QAQVVFVVEGTAALGPYWNTLKTNYLDPILEYFNGGPIAERDFGGDYSNTEYGLVVFNTADCYPEPIVQRSGPTSSPQKF 92 (226)
T ss_pred cceEEEEEecchhhhhhHHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEEEEeccCCCcccceeccCCcCCHHHH
Confidence 58999999999999999999999999999999999999999974 3579999999999999999999999999999999
Q ss_pred HHHhccCccCCCCCch-hhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchh
Q 003284 81 LHWLSTIPFAGGGFND-AAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNE 159 (834)
Q Consensus 81 l~~Ld~I~f~GGG~~~-~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~ 159 (834)
++|||+|+|.|||+++ ++|+|||++||+|||+++..++.....+.+||||||||||||++|+..+ +.
T Consensus 93 l~~L~~I~f~GGG~e~~a~iaEGLa~AL~~fd~~~~~r~~~~~~~~~khcILI~nSpP~~~p~~~~------------~~ 160 (226)
T PF11265_consen 93 LQWLDAIQFSGGGFESCAAIAEGLAEALQCFDDFKQMRQQQQQTDVQKHCILICNSPPYRLPVNEC------------PQ 160 (226)
T ss_pred HHHHHccCcCCCCcccchhHHHHHHHHHHHhcchhhhccccCcccccceEEEEeCCCCccccccCC------------Cc
Confidence 9999999999999875 5599999999999999887777677788999999999999999997321 11
Q ss_pred hhhhccCCCHHHHHHHHhhcCcEEEEeccCCchhHHHHHHHhcCCCCC-CCCCCCCCCCCCeEEEeeccc
Q 003284 160 AQAESRLSDAETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRNPRA-ADPPVDNSKNPHFLVLISENF 228 (834)
Q Consensus 160 ~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrqlp~l~~Lfeka~~~~~~-~~~~~~~ak~p~hlVLLsg~~ 228 (834)
+ +..++|++|.++.||+|+||||||||+|+|++||||+++|.++ +++++||||||||||||||+|
T Consensus 161 ---~-~~~~~d~la~~~~~~~I~LSiisPrklP~l~~Lfeka~~~~~~~~~~~~~~ak~p~hlVLl~g~~ 226 (226)
T PF11265_consen 161 ---Y-SGKTCDQLAVLISERNISLSIISPRKLPSLRSLFEKAKGNPRAAADPSKDYAKDPRHLVLLRGYF 226 (226)
T ss_pred ---c-cCCCHHHHHHHHHhcCceEEEEcCccCHHHHHHHHhcCCCcccccccccccccCCCeEEEeecCC
Confidence 1 2258999999999999999999999999999999999999998 699999999999999999986
No 2
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.16 E-value=1.3e-09 Score=109.70 Aligned_cols=154 Identities=10% Similarity=0.216 Sum_probs=111.5
Q ss_pred CccEEEEEeccccch-HhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCC---CCHH
Q 003284 3 EKQLIVAVEGTAAMG-PYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWT---KDVD 78 (834)
Q Consensus 3 ~~dvVFVID~Tasmg-~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfT---sd~~ 78 (834)
..|||||||++++|+ ..|+.+| +++..+++.|...- ..+......|+|||.|.+... ..++|+ .|..
T Consensus 2 ~~dvv~vlD~S~Sm~~~~~~~~k-~~~~~~~~~l~~~~--~~~i~~~~~rvglv~fs~~~~------~~~~l~~~~~~~~ 72 (186)
T cd01480 2 PVDITFVLDSSESVGLQNFDITK-NFVKRVAERFLKDY--YRKDPAGSWRVGVVQYSDQQE------VEAGFLRDIRNYT 72 (186)
T ss_pred CeeEEEEEeCCCccchhhHHHHH-HHHHHHHHHHhhhh--ccCCCCCceEEEEEEecCCce------eeEecccccCCHH
Confidence 369999999999999 7888776 66778888885420 001112358999999997643 345565 7899
Q ss_pred HHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccch
Q 003284 79 IFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENN 158 (834)
Q Consensus 79 ~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~ 158 (834)
.+++.|++|.+.||| -++.+||..|++.+.+. ......|++||++|..+.....
T Consensus 73 ~l~~~i~~l~~~gg~---T~~~~AL~~a~~~l~~~-------~~~~~~~~iillTDG~~~~~~~---------------- 126 (186)
T cd01480 73 SLKEAVDNLEYIGGG---TFTDCALKYATEQLLEG-------SHQKENKFLLVITDGHSDGSPD---------------- 126 (186)
T ss_pred HHHHHHHhCccCCCC---ccHHHHHHHHHHHHhcc-------CCCCCceEEEEEeCCCcCCCcc----------------
Confidence 999999999988776 57889999999877531 2245689999999887642221
Q ss_pred hhhhhccCCCHHHHHHHHhhcCcEEEEeccCC--chhHHHHHH
Q 003284 159 EAQAESRLSDAETVAKSFVQCSVSLSVICPKQ--LPKLTAIYN 199 (834)
Q Consensus 159 ~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrq--lp~l~~Lfe 199 (834)
.+.+..++.+.++||.+++|.... ...|++|-+
T Consensus 127 --------~~~~~~~~~~~~~gi~i~~vgig~~~~~~L~~IA~ 161 (186)
T cd01480 127 --------GGIEKAVNEADHLGIKIFFVAVGSQNEEPLSRIAC 161 (186)
T ss_pred --------hhHHHHHHHHHHCCCEEEEEecCccchHHHHHHHc
Confidence 145678888999999999999875 233444443
No 3
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.12 E-value=4e-09 Score=103.72 Aligned_cols=162 Identities=14% Similarity=0.263 Sum_probs=111.7
Q ss_pred ccEEEEEeccccch-HhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHHHH
Q 003284 4 KQLIVAVEGTAAMG-PYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLH 82 (834)
Q Consensus 4 ~dvVFVID~Tasmg-~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~fl~ 82 (834)
+|||||||++++|+ ..|+.+| +++.-+++.|.- +....|+|||+|.+... .. -.+.-+.+...++.
T Consensus 1 ~Dv~~vlD~S~Sm~~~~~~~~k-~~~~~l~~~~~~--------~~~~~rvgli~fs~~~~---~~-~~l~~~~~~~~l~~ 67 (164)
T cd01482 1 ADIVFLVDGSWSIGRSNFNLVR-SFLSSVVEAFEI--------GPDGVQVGLVQYSDDPR---TE-FDLNAYTSKEDVLA 67 (164)
T ss_pred CCEEEEEeCCCCcChhhHHHHH-HHHHHHHhheee--------CCCceEEEEEEECCCee---EE-EecCCCCCHHHHHH
Confidence 59999999999998 4787776 457777777732 12468999999999742 11 11223467889999
Q ss_pred HhccCccCCCCCchhhHHHHHHHHHhh-cccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhhh
Q 003284 83 WLSTIPFAGGGFNDAAIAEGLSEALMM-FSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQ 161 (834)
Q Consensus 83 ~Ld~I~f~GGG~~~~AvaEGLa~AL~~-f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~~ 161 (834)
.|+.|.+.||+ -.+.+||..|++. |... .....+..|.+||++|..|.
T Consensus 68 ~l~~~~~~~g~---T~~~~aL~~a~~~~~~~~-----~~~r~~~~k~iillTDG~~~----------------------- 116 (164)
T cd01482 68 AIKNLPYKGGN---TRTGKALTHVREKNFTPD-----AGARPGVPKVVILITDGKSQ----------------------- 116 (164)
T ss_pred HHHhCcCCCCC---ChHHHHHHHHHHHhcccc-----cCCCCCCCEEEEEEcCCCCC-----------------------
Confidence 99999998876 4688999888864 4321 11234567889999887653
Q ss_pred hhccCCCHHHHHHHHhhcCcEEEEeccCCchhHHHHHHHhcCCCCCCCCCCCCCCCCCeEEEeecc
Q 003284 162 AESRLSDAETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISEN 227 (834)
Q Consensus 162 ~~~~l~d~e~lA~~~~e~~I~LSvIsPrqlp~l~~Lfeka~~~~~~~~~~~~~ak~p~hlVLLsg~ 227 (834)
.|.+..|+.+.+.||.+++|.-.. ...+.|-+-|+.. +-.|+..+++|
T Consensus 117 -----~~~~~~a~~lk~~gi~i~~ig~g~-~~~~~L~~ia~~~------------~~~~~~~~~d~ 164 (164)
T cd01482 117 -----DDVELPARVLRNLGVNVFAVGVKD-ADESELKMIASKP------------SETHVFNVADF 164 (164)
T ss_pred -----chHHHHHHHHHHCCCEEEEEecCc-CCHHHHHHHhCCC------------chheEEEcCCC
Confidence 145678899999999999998755 3344444433321 12488777664
No 4
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=99.08 E-value=6.7e-09 Score=103.91 Aligned_cols=164 Identities=11% Similarity=0.164 Sum_probs=115.4
Q ss_pred ccEEEEEeccccchH-hHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccC--CCCHHHH
Q 003284 4 KQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGW--TKDVDIF 80 (834)
Q Consensus 4 ~dvVFVID~Tasmg~-yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gf--Tsd~~~f 80 (834)
.||+||||++++|++ .|+.+| .++.-+++.|.-+ ....|+|||.|.+... ..+.| ..+...+
T Consensus 1 ~Di~fvlD~S~S~~~~~f~~~k-~fi~~~i~~l~~~--------~~~~rvgvv~fs~~~~------~~~~l~~~~~~~~~ 65 (177)
T cd01469 1 MDIVFVLDGSGSIYPDDFQKVK-NFLSTVMKKLDIG--------PTKTQFGLVQYSESFR------TEFTLNEYRTKEEP 65 (177)
T ss_pred CcEEEEEeCCCCCCHHHHHHHH-HHHHHHHHHcCcC--------CCCcEEEEEEECCcee------EEEecCccCCHHHH
Confidence 499999999999997 888877 5688888888542 1358999999998732 22333 3466788
Q ss_pred HHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhh
Q 003284 81 LHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEA 160 (834)
Q Consensus 81 l~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~ 160 (834)
++.++.+.+.||+ .++.+||..|+..+.... ...+....|.+|||+|...+.-.
T Consensus 66 ~~~i~~~~~~~g~---T~~~~AL~~a~~~l~~~~----~g~R~~~~kv~illTDG~~~~~~------------------- 119 (177)
T cd01469 66 LSLVKHISQLLGL---TNTATAIQYVVTELFSES----NGARKDATKVLVVITDGESHDDP------------------- 119 (177)
T ss_pred HHHHHhCccCCCC---ccHHHHHHHHHHHhcCcc----cCCCCCCCeEEEEEeCCCCCCcc-------------------
Confidence 9999999988876 888999999997642111 11234578999999988876322
Q ss_pred hhhccCCCHHHHHHHHhhcCcEEEEeccCCch----hHHHHHHHhcCCCCCCCCCCCCCCCCCeEEEeecc
Q 003284 161 QAESRLSDAETVAKSFVQCSVSLSVICPKQLP----KLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISEN 227 (834)
Q Consensus 161 ~~~~~l~d~e~lA~~~~e~~I~LSvIsPrqlp----~l~~Lfeka~~~~~~~~~~~~~ak~p~hlVLLsg~ 227 (834)
+.+.+++.+.+.||.+++|.--... .+++|.+-|.... -.|+..++.|
T Consensus 120 -------~~~~~~~~~k~~gv~v~~Vgvg~~~~~~~~~~~L~~ias~p~------------~~h~f~~~~~ 171 (177)
T cd01469 120 -------LLKDVIPQAEREGIIRYAIGVGGHFQRENSREELKTIASKPP------------EEHFFNVTDF 171 (177)
T ss_pred -------ccHHHHHHHHHCCcEEEEEEecccccccccHHHHHHHhcCCc------------HHhEEEecCH
Confidence 1266788889999999999876531 2344444332110 1488888776
No 5
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=99.03 E-value=2e-09 Score=103.20 Aligned_cols=144 Identities=17% Similarity=0.220 Sum_probs=105.2
Q ss_pred cEEEEEeccccchHh------HHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHH
Q 003284 5 QLIVAVEGTAAMGPY------WQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVD 78 (834)
Q Consensus 5 dvVFVID~Tasmg~y------i~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~ 78 (834)
|||||||.|++|..+ |+.+|.- +.-+++.+. ..+++||.|.+.. -..++||.|..
T Consensus 1 dvv~v~D~SgSM~~~~~~~~~~~~~~~~-~~~~~~~~~------------~~~v~l~~f~~~~------~~~~~~t~~~~ 61 (172)
T PF13519_consen 1 DVVFVLDNSGSMNGYDGNRTRIDQAKDA-LNELLANLP------------GDRVGLVSFSDSS------RTLSPLTSDKD 61 (172)
T ss_dssp EEEEEEE-SGGGGTTTSSS-HHHHHHHH-HHHHHHHHT------------TSEEEEEEESTSC------EEEEEEESSHH
T ss_pred CEEEEEECCcccCCCCCCCcHHHHHHHH-HHHHHHHCC------------CCEEEEEEecccc------cccccccccHH
Confidence 899999999999999 7777644 666666652 2399999999853 23567899999
Q ss_pred HHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccch
Q 003284 79 IFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENN 158 (834)
Q Consensus 79 ~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~ 158 (834)
.|..+|+++...+.......+.+||.+|+++|++.+ ...|++|||+|..|.
T Consensus 62 ~~~~~l~~~~~~~~~~~~t~~~~al~~a~~~~~~~~---------~~~~~iv~iTDG~~~-------------------- 112 (172)
T PF13519_consen 62 ELKNALNKLSPQGMPGGGTNLYDALQEAAKMLASSD---------NRRRAIVLITDGEDN-------------------- 112 (172)
T ss_dssp HHHHHHHTHHHHG--SSS--HHHHHHHHHHHHHC-S---------SEEEEEEEEES-TTH--------------------
T ss_pred HHHHHhhcccccccCccCCcHHHHHHHHHHHHHhCC---------CCceEEEEecCCCCC--------------------
Confidence 999999999976555556889999999999997532 357899999987443
Q ss_pred hhhhhccCCCHHHHHHHHhhcCcEEEEeccCCc----hhHHHHHHHhcCC
Q 003284 159 EAQAESRLSDAETVAKSFVQCSVSLSVICPKQL----PKLTAIYNAAKRN 204 (834)
Q Consensus 159 ~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrql----p~l~~Lfeka~~~ 204 (834)
.+...+++.+.+++|++.+|.-..- ..|+.|.+..++.
T Consensus 113 --------~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~l~~la~~tgG~ 154 (172)
T PF13519_consen 113 --------SSDIEAAKALKQQGITIYTVGIGSDSDANEFLQRLAEATGGR 154 (172)
T ss_dssp --------CHHHHHHHHHHCTTEEEEEEEES-TT-EHHHHHHHHHHTEEE
T ss_pred --------cchhHHHHHHHHcCCeEEEEEECCCccHHHHHHHHHHhcCCE
Confidence 1234488889999999999977654 3477777766543
No 6
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.03 E-value=1.7e-08 Score=100.52 Aligned_cols=149 Identities=15% Similarity=0.290 Sum_probs=108.0
Q ss_pred ccEEEEEeccccch-HhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHHHH
Q 003284 4 KQLIVAVEGTAAMG-PYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLH 82 (834)
Q Consensus 4 ~dvVFVID~Tasmg-~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~fl~ 82 (834)
+||||+||++++++ ..|+.+| ++|..+++.|.-+ ...+|+|||.|.+... .+ -.+.-..|...++.
T Consensus 1 ~DivfllD~S~Si~~~~f~~~k-~fi~~lv~~f~i~--------~~~~rVgvv~ys~~~~-~~---~~l~~~~~~~~l~~ 67 (165)
T cd01481 1 KDIVFLIDGSDNVGSGNFPAIR-DFIERIVQSLDVG--------PDKIRVAVVQFSDTPR-PE---FYLNTHSTKADVLG 67 (165)
T ss_pred CCEEEEEeCCCCcCHHHHHHHH-HHHHHHHhhccCC--------CCCcEEEEEEecCCee-EE---EeccccCCHHHHHH
Confidence 69999999999999 8888887 7799999999532 2358999999987642 11 12334557899999
Q ss_pred HhccCccCCCCCchhhHHHHHHHHHh-hcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhhh
Q 003284 83 WLSTIPFAGGGFNDAAIAEGLSEALM-MFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQ 161 (834)
Q Consensus 83 ~Ld~I~f~GGG~~~~AvaEGLa~AL~-~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~~ 161 (834)
.++.|++.||+. ..+.+||..+.+ +|... .+ ......+.|..|||+|-..+
T Consensus 68 ~i~~i~~~~g~~--t~t~~AL~~~~~~~f~~~-~g--~R~~~~~~kv~vviTdG~s~----------------------- 119 (165)
T cd01481 68 AVRRLRLRGGSQ--LNTGSALDYVVKNLFTKS-AG--SRIEEGVPQFLVLITGGKSQ----------------------- 119 (165)
T ss_pred HHHhcccCCCCc--ccHHHHHHHHHHhhcCcc-cc--CCccCCCCeEEEEEeCCCCc-----------------------
Confidence 999999998753 356788888775 55421 11 11134577899999977543
Q ss_pred hhccCCCHHHHHHHHhhcCcEEEEeccCCchhHHHHHH
Q 003284 162 AESRLSDAETVAKSFVQCSVSLSVICPKQLPKLTAIYN 199 (834)
Q Consensus 162 ~~~~l~d~e~lA~~~~e~~I~LSvIsPrqlp~l~~Lfe 199 (834)
.|.+..|+.+.+.||.+++|--.. ....+|-+
T Consensus 120 -----d~~~~~a~~lr~~gv~i~~vG~~~-~~~~eL~~ 151 (165)
T cd01481 120 -----DDVERPAVALKRAGIVPFAIGARN-ADLAELQQ 151 (165)
T ss_pred -----chHHHHHHHHHHCCcEEEEEeCCc-CCHHHHHH
Confidence 145678999999999999998874 23444444
No 7
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.03 E-value=1e-08 Score=97.69 Aligned_cols=149 Identities=15% Similarity=0.269 Sum_probs=109.1
Q ss_pred ccEEEEEeccccchH-hHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCC--HHHH
Q 003284 4 KQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKD--VDIF 80 (834)
Q Consensus 4 ~dvVFVID~Tasmg~-yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd--~~~f 80 (834)
.||+||||+|++|.. +|+.++ ..+..+++.|.... ...+++||.|.+... ..+.|+++ ..++
T Consensus 1 ~di~~llD~S~Sm~~~~~~~~~-~~~~~~~~~~~~~~--------~~~~~~li~f~~~~~------~~~~~~~~~~~~~~ 65 (161)
T cd01450 1 LDIVFLLDGSESVGPENFEKVK-DFIEKLVEKLDIGP--------DKTRVGLVQYSDDVR------VEFSLNDYKSKDDL 65 (161)
T ss_pred CcEEEEEeCCCCcCHHHHHHHH-HHHHHHHHheeeCC--------CceEEEEEEEcCCce------EEEECCCCCCHHHH
Confidence 489999999999999 666665 44777777775421 367999999998522 23455544 8999
Q ss_pred HHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhh
Q 003284 81 LHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEA 160 (834)
Q Consensus 81 l~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~ 160 (834)
.++|+++.+.+| +...+.|||..|++.+..... .+....|++|||++..++.-.
T Consensus 66 ~~~i~~~~~~~~--~~t~~~~al~~a~~~~~~~~~-----~~~~~~~~iiliTDG~~~~~~------------------- 119 (161)
T cd01450 66 LKAVKNLKYLGG--GGTNTGKALQYALEQLFSESN-----ARENVPKVIIVLTDGRSDDGG------------------- 119 (161)
T ss_pred HHHHHhcccCCC--CCccHHHHHHHHHHHhccccc-----ccCCCCeEEEEECCCCCCCCc-------------------
Confidence 999999988776 457889999999988764221 234567899999998775321
Q ss_pred hhhccCCCHHHHHHHHhhcCcEEEEeccCC--chhHHHHHHH
Q 003284 161 QAESRLSDAETVAKSFVQCSVSLSVICPKQ--LPKLTAIYNA 200 (834)
Q Consensus 161 ~~~~~l~d~e~lA~~~~e~~I~LSvIsPrq--lp~l~~Lfek 200 (834)
+.+.+++.+.+++|.+++|.-.. ...|++|-.+
T Consensus 120 -------~~~~~~~~~~~~~v~v~~i~~g~~~~~~l~~la~~ 154 (161)
T cd01450 120 -------DPKEAAAKLKDEGIKVFVVGVGPADEEELREIASC 154 (161)
T ss_pred -------chHHHHHHHHHCCCEEEEEeccccCHHHHHHHhCC
Confidence 35788999999999999998763 3444444443
No 8
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=99.02 E-value=1.3e-08 Score=99.66 Aligned_cols=151 Identities=13% Similarity=0.248 Sum_probs=105.6
Q ss_pred ccEEEEEeccccchH-hHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHHHH
Q 003284 4 KQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLH 82 (834)
Q Consensus 4 ~dvVFVID~Tasmg~-yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~fl~ 82 (834)
+|||||||.+++|.. .|+.+| +.+.-+++.|... ....++|||+|.+... .+..+....|...++.
T Consensus 1 ~Dvv~vlD~SgSm~~~~~~~~k-~~~~~~~~~l~~~--------~~~~~~giv~Fs~~~~----~~~~~~~~~~~~~~~~ 67 (164)
T cd01472 1 ADIVFLVDGSESIGLSNFNLVK-DFVKRVVERLDIG--------PDGVRVGVVQYSDDPR----TEFYLNTYRSKDDVLE 67 (164)
T ss_pred CCEEEEEeCCCCCCHHHHHHHH-HHHHHHHhhcccC--------CCCeEEEEEEEcCcee----EEEecCCCCCHHHHHH
Confidence 599999999999999 777776 4577777777421 1357999999997643 1122222488999999
Q ss_pred HhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhhhh
Q 003284 83 WLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQA 162 (834)
Q Consensus 83 ~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~~~ 162 (834)
.|+++.+.||+ -++.+||..|++.+.+.. ........|++|||+|.-+. .
T Consensus 68 ~l~~l~~~~g~---T~~~~al~~a~~~l~~~~----~~~~~~~~~~iiliTDG~~~----~------------------- 117 (164)
T cd01472 68 AVKNLRYIGGG---TNTGKALKYVRENLFTEA----SGSREGVPKVLVVITDGKSQ----D------------------- 117 (164)
T ss_pred HHHhCcCCCCC---chHHHHHHHHHHHhCCcc----cCCCCCCCEEEEEEcCCCCC----c-------------------
Confidence 99999987655 478899999998775321 11234467899999988431 0
Q ss_pred hccCCCHHHHHHHHhhcCcEEEEeccCC--chhHHHHHHHhc
Q 003284 163 ESRLSDAETVAKSFVQCSVSLSVICPKQ--LPKLTAIYNAAK 202 (834)
Q Consensus 163 ~~~l~d~e~lA~~~~e~~I~LSvIsPrq--lp~l~~Lfeka~ 202 (834)
+.+..+..+.+++|.++.|.-.. ...|+.|.+..+
T Consensus 118 -----~~~~~~~~l~~~gv~i~~ig~g~~~~~~L~~ia~~~~ 154 (164)
T cd01472 118 -----DVEEPAVELKQAGIEVFAVGVKNADEEELKQIASDPK 154 (164)
T ss_pred -----hHHHHHHHHHHCCCEEEEEECCcCCHHHHHHHHCCCc
Confidence 12345566788999999997653 456666655444
No 9
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=98.90 E-value=8e-08 Score=98.06 Aligned_cols=154 Identities=17% Similarity=0.285 Sum_probs=109.5
Q ss_pred ccEEEEEeccccchHh-HHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCC----CHH
Q 003284 4 KQLIVAVEGTAAMGPY-WQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTK----DVD 78 (834)
Q Consensus 4 ~dvVFVID~Tasmg~y-i~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTs----d~~ 78 (834)
.||||+||++.+|+.. |+.-..+++.-+++.|.-+ ...+|+|||.|.+... ..++|+. |-.
T Consensus 1 ~Di~fllD~S~Si~~~~f~~~~~~f~~~lv~~l~i~--------~~~~rvgvv~fs~~~~------~~~~~~~~~~~~~~ 66 (192)
T cd01473 1 YDLTLILDESASIGYSNWRKDVIPFTEKIINNLNIS--------KDKVHVGILLFAEKNR------DVVPFSDEERYDKN 66 (192)
T ss_pred CcEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCccC--------CCccEEEEEEecCCce------eEEecCcccccCHH
Confidence 3999999999999976 8864456788889988543 2368999999998753 3344543 456
Q ss_pred HHHHHhccCc---cCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccc
Q 003284 79 IFLHWLSTIP---FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQN 155 (834)
Q Consensus 79 ~fl~~Ld~I~---f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~ 155 (834)
.++..++.|. +.|| .-.+.+||..|++.|.... ....++.|..|||+|...+..-.
T Consensus 67 ~l~~~i~~l~~~~~~~g---~T~~~~AL~~a~~~~~~~~-----~~r~~~~kv~IllTDG~s~~~~~------------- 125 (192)
T cd01473 67 ELLKKINDLKNSYRSGG---ETYIVEALKYGLKNYTKHG-----NRRKDAPKVTMLFTDGNDTSASK------------- 125 (192)
T ss_pred HHHHHHHHHHhccCCCC---cCcHHHHHHHHHHHhccCC-----CCcccCCeEEEEEecCCCCCcch-------------
Confidence 7778777774 3344 3457888888888764311 12234689999999987763210
Q ss_pred cchhhhhhccCCCHHHHHHHHhhcCcEEEEeccCCchhHHHHHHHhcCC
Q 003284 156 ENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRN 204 (834)
Q Consensus 156 e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrqlp~l~~Lfeka~~~ 204 (834)
.+....|+.+.++||.+++|---. ....+|..-|+-+
T Consensus 126 -----------~~~~~~a~~lk~~gV~i~~vGiG~-~~~~el~~ia~~~ 162 (192)
T cd01473 126 -----------KELQDISLLYKEENVKLLVVGVGA-ASENKLKLLAGCD 162 (192)
T ss_pred -----------hhHHHHHHHHHHCCCEEEEEEecc-ccHHHHHHhcCCC
Confidence 135678999999999999999886 4566777766543
No 10
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=98.85 E-value=7.2e-08 Score=99.96 Aligned_cols=150 Identities=15% Similarity=0.213 Sum_probs=104.5
Q ss_pred CccEEEEEeccccchH-hHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccC--CCCHHH
Q 003284 3 EKQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGW--TKDVDI 79 (834)
Q Consensus 3 ~~dvVFVID~Tasmg~-yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gf--Tsd~~~ 79 (834)
..|||||||++++|+. .|+.+| +++.-+++.|.-+ ....|+|||.|.+-.- ..++| ..|...
T Consensus 2 ~~DlvfllD~S~Sm~~~~~~~~k-~f~~~l~~~l~~~--------~~~~rvglv~fs~~~~------~~~~l~~~~~~~~ 66 (224)
T cd01475 2 PTDLVFLIDSSRSVRPENFELVK-QFLNQIIDSLDVG--------PDATRVGLVQYSSTVK------QEFPLGRFKSKAD 66 (224)
T ss_pred CccEEEEEeCCCCCCHHHHHHHH-HHHHHHHHhcccC--------CCccEEEEEEecCcee------EEecccccCCHHH
Confidence 3799999999999996 688777 6688888888432 1358999999998732 23444 467889
Q ss_pred HHHHhccCccCCCCCchhhHHHHHHHHHh-hcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccch
Q 003284 80 FLHWLSTIPFAGGGFNDAAIAEGLSEALM-MFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENN 158 (834)
Q Consensus 80 fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~-~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~ 158 (834)
+...|+.|.+.|||- .+.+||..|+. .|.... .-++......|.+|||+|..+.
T Consensus 67 l~~~i~~i~~~~~~t---~tg~AL~~a~~~~~~~~~--g~r~~~~~~~kvvillTDG~s~-------------------- 121 (224)
T cd01475 67 LKRAVRRMEYLETGT---MTGLAIQYAMNNAFSEAE--GARPGSERVPRVGIVVTDGRPQ-------------------- 121 (224)
T ss_pred HHHHHHhCcCCCCCC---hHHHHHHHHHHHhCChhc--CCCCCCCCCCeEEEEEcCCCCc--------------------
Confidence 999999999988763 45567777775 343211 1122334457899999887542
Q ss_pred hhhhhccCCCHHHHHHHHhhcCcEEEEeccCCchhHHHHHHHh
Q 003284 159 EAQAESRLSDAETVAKSFVQCSVSLSVICPKQLPKLTAIYNAA 201 (834)
Q Consensus 159 ~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrqlp~l~~Lfeka 201 (834)
.+.+.+++.+.+.||.+++|.--.. ....|.+-|
T Consensus 122 --------~~~~~~a~~lk~~gv~i~~VgvG~~-~~~~L~~ia 155 (224)
T cd01475 122 --------DDVSEVAAKARALGIEMFAVGVGRA-DEEELREIA 155 (224)
T ss_pred --------ccHHHHHHHHHHCCcEEEEEeCCcC-CHHHHHHHh
Confidence 1356788999999999999976653 234444433
No 11
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=98.83 E-value=7.2e-08 Score=96.82 Aligned_cols=138 Identities=17% Similarity=0.200 Sum_probs=95.5
Q ss_pred CccEEEEEeccccchHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHHHH
Q 003284 3 EKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLH 82 (834)
Q Consensus 3 ~~dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~fl~ 82 (834)
..|||||||++++|+..|..++ +++..+++.|.. ...|+|||.|.+... ..++||++.+.+.+
T Consensus 4 ~~Dvv~llD~SgSm~~~~~~~~-~~~~~l~~~~~~----------~~~rvglv~Fs~~~~------~~~~l~~~~~~~~~ 66 (185)
T cd01474 4 HFDLYFVLDKSGSVAANWIEIY-DFVEQLVDRFNS----------PGLRFSFITFSTRAT------KILPLTDDSSAIIK 66 (185)
T ss_pred ceeEEEEEeCcCchhhhHHHHH-HHHHHHHHHcCC----------CCcEEEEEEecCCce------EEEeccccHHHHHH
Confidence 4799999999999999887765 667778888742 237999999997632 46788888776666
Q ss_pred HhccCcc--CCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhh
Q 003284 83 WLSTIPF--AGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEA 160 (834)
Q Consensus 83 ~Ld~I~f--~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~ 160 (834)
.|+.|.. .|| .-++.+||..|++.+..... ......|++|||+|-.++.-..
T Consensus 67 ~l~~l~~~~~~g---~T~~~~aL~~a~~~l~~~~~-----~~r~~~~~villTDG~~~~~~~------------------ 120 (185)
T cd01474 67 GLEVLKKVTPSG---QTYIHEGLENANEQIFNRNG-----GGRETVSVIIALTDGQLLLNGH------------------ 120 (185)
T ss_pred HHHHHhccCCCC---CCcHHHHHHHHHHHHHhhcc-----CCCCCCeEEEEEcCCCcCCCCC------------------
Confidence 6544432 233 36788999999865531111 1112238999999887742110
Q ss_pred hhhccCCCHHHHHHHHhhcCcEEEEeccC
Q 003284 161 QAESRLSDAETVAKSFVQCSVSLSVICPK 189 (834)
Q Consensus 161 ~~~~~l~d~e~lA~~~~e~~I~LSvIsPr 189 (834)
.++...|+.+.+.||.++.|.-.
T Consensus 121 ------~~~~~~a~~l~~~gv~i~~vgv~ 143 (185)
T cd01474 121 ------KYPEHEAKLSRKLGAIVYCVGVT 143 (185)
T ss_pred ------cchHHHHHHHHHcCCEEEEEeec
Confidence 13456678888999999999863
No 12
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=98.81 E-value=1.8e-07 Score=94.77 Aligned_cols=150 Identities=17% Similarity=0.239 Sum_probs=102.6
Q ss_pred ccEEEEEeccccch------HhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCH
Q 003284 4 KQLIVAVEGTAAMG------PYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDV 77 (834)
Q Consensus 4 ~dvVFVID~Tasmg------~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~ 77 (834)
+|||||||.+.+|. .-++.+|.. +..+++.+-.. ...-++|||+|++..+ ....++|.|.
T Consensus 4 r~ivi~lD~S~SM~a~D~~ptRl~~ak~~-~~~fi~~~~~~--------~~~~~vglv~f~~~~a-----~~~~PlT~D~ 69 (183)
T cd01453 4 RHLIIVIDCSRSMEEQDLKPSRLAVVLKL-LELFIEEFFDQ--------NPISQLGIISIKNGRA-----EKLTDLTGNP 69 (183)
T ss_pred eEEEEEEECcHHHhcCCCCchHHHHHHHH-HHHHHHHHhhc--------CccccEEEEEEcCCcc-----EEEECCCCCH
Confidence 69999999999998 466666644 45555444210 0235999999976644 2467889999
Q ss_pred HHHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCc-EEEEeecCCCCCCCCCcccCCcccccccc
Q 003284 78 DIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQR-HCILVAASNPHPLPTPVYRPQMQNLDQNE 156 (834)
Q Consensus 78 ~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qk-hCILIa~SpP~~lp~pv~~p~~~~~~~~e 156 (834)
..|+..|+.+...+| ..++.+||..|+.+|.... ....| ++||+++-. .+
T Consensus 70 ~~~~~~L~~~~~~~G---~t~l~~aL~~A~~~l~~~~--------~~~~~~iiil~sd~~------~~------------ 120 (183)
T cd01453 70 RKHIQALKTARECSG---EPSLQNGLEMALESLKHMP--------SHGSREVLIIFSSLS------TC------------ 120 (183)
T ss_pred HHHHHHhhcccCCCC---chhHHHHHHHHHHHHhcCC--------ccCceEEEEEEcCCC------cC------------
Confidence 999999998722222 3689999999999985321 11234 445554310 00
Q ss_pred chhhhhhccCCCHHHHHHHHhhcCcEEEEeccC-CchhHHHHHHHhcCC
Q 003284 157 NNEAQAESRLSDAETVAKSFVQCSVSLSVICPK-QLPKLTAIYNAAKRN 204 (834)
Q Consensus 157 ~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPr-qlp~l~~Lfeka~~~ 204 (834)
...+.+.+++.+++.+|.+++|.-- ..+.|++|-++.++.
T Consensus 121 --------~~~~~~~~~~~l~~~~I~v~~IgiG~~~~~L~~ia~~tgG~ 161 (183)
T cd01453 121 --------DPGNIYETIDKLKKENIRVSVIGLSAEMHICKEICKATNGT 161 (183)
T ss_pred --------ChhhHHHHHHHHHHcCcEEEEEEechHHHHHHHHHHHhCCe
Confidence 0013467899999999999999876 356799999988765
No 13
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=98.79 E-value=3e-07 Score=89.55 Aligned_cols=152 Identities=13% Similarity=0.231 Sum_probs=104.5
Q ss_pred ccEEEEEeccccchHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHHHHH
Q 003284 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHW 83 (834)
Q Consensus 4 ~dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~fl~~ 83 (834)
.|||||||++++|...|+..| +++.-+++.|..+ ....|+|||.|.+... ....-.+.++.+.+.++..
T Consensus 1 ldv~~llD~S~Sm~~~~~~~~-~~~~~~~~~l~~~--------~~~~~v~lv~f~~~~~--~~~~~~l~~~~~~~~l~~~ 69 (163)
T cd01476 1 LDLLFVLDSSGSVRGKFEKYK-KYIERIVEGLEIG--------PTATRVALITYSGRGR--QRVRFNLPKHNDGEELLEK 69 (163)
T ss_pred CCEEEEEeCCcchhhhHHHHH-HHHHHHHHhcCCC--------CCCcEEEEEEEcCCCc--eEEEecCCCCCCHHHHHHH
Confidence 489999999999999887665 6677888877432 1358999999987521 1222234556788999999
Q ss_pred hccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhhhhh
Q 003284 84 LSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAE 163 (834)
Q Consensus 84 Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~~~~ 163 (834)
++.|...||+ .++.+||..|..++.... . ......|.+||++|-.+..
T Consensus 70 i~~l~~~gg~---T~l~~aL~~a~~~l~~~~--~---~r~~~~~~villTDG~~~~------------------------ 117 (163)
T cd01476 70 VDNLRFIGGT---TATGAAIEVALQQLDPSE--G---RREGIPKVVVVLTDGRSHD------------------------ 117 (163)
T ss_pred HHhCccCCCC---ccHHHHHHHHHHHhcccc--C---CCCCCCeEEEEECCCCCCC------------------------
Confidence 9999876654 578899999998774211 1 1123458889998754320
Q ss_pred ccCCCHHHHHHHHhh-cCcEEEEeccCCc--hhHHHHHHHhc
Q 003284 164 SRLSDAETVAKSFVQ-CSVSLSVICPKQL--PKLTAIYNAAK 202 (834)
Q Consensus 164 ~~l~d~e~lA~~~~e-~~I~LSvIsPrql--p~l~~Lfeka~ 202 (834)
++...++.+.+ .+|+++.|.-..- ..++.|-+-++
T Consensus 118 ----~~~~~~~~l~~~~~v~v~~vg~g~~~~~~~~~L~~ia~ 155 (163)
T cd01476 118 ----DPEKQARILRAVPNIETFAVGTGDPGTVDTEELHSITG 155 (163)
T ss_pred ----chHHHHHHHhhcCCCEEEEEECCCccccCHHHHHHHhC
Confidence 23456777777 9999999988664 44555554443
No 14
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=98.75 E-value=1.8e-07 Score=95.82 Aligned_cols=159 Identities=11% Similarity=0.163 Sum_probs=100.1
Q ss_pred CccEEEEEeccccchHh-HHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCC--CCHHH
Q 003284 3 EKQLIVAVEGTAAMGPY-WQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWT--KDVDI 79 (834)
Q Consensus 3 ~~dvVFVID~Tasmg~y-i~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfT--sd~~~ 79 (834)
..|||||||++.+|++. |+.+|.. |..++..|..+.. .......+|+|||+|.+..- ..|.++ .+...
T Consensus 19 ~~DivfvlD~S~Sm~~~~f~~~k~f-i~~~~~~~~~~~~--~~~~~~~~rVGlV~fs~~a~------~~~~L~d~~~~~~ 89 (193)
T cd01477 19 WLDIVFVVDNSKGMTQGGLWQVRAT-ISSLFGSSSQIGT--DYDDPRSTRVGLVTYNSNAT------VVADLNDLQSFDD 89 (193)
T ss_pred eeeEEEEEeCCCCcchhhHHHHHHH-HHHHHhhcccccc--ccCCCCCcEEEEEEccCceE------EEEecccccCHHH
Confidence 37999999999999854 6666643 5566666642100 00011358999999998743 223333 36678
Q ss_pred HHHHhcc-C-ccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccc
Q 003284 80 FLHWLST-I-PFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNEN 157 (834)
Q Consensus 80 fl~~Ld~-I-~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~ 157 (834)
+++.|+. + ....|| .-.+..||..|+++|.... +..+..+.|++|||++-.-..
T Consensus 90 ~~~ai~~~~~~~~~~g--gT~ig~aL~~A~~~l~~~~----~~~R~~v~kvvIllTDg~~~~------------------ 145 (193)
T cd01477 90 LYSQIQGSLTDVSSTN--ASYLDTGLQAAEQMLAAGK----RTSRENYKKVVIVFASDYNDE------------------ 145 (193)
T ss_pred HHHHHHHHhhccccCC--cchHHHHHHHHHHHHHhhh----ccccCCCCeEEEEEecCccCC------------------
Confidence 8887774 2 222222 2467888999999886321 122345789999998641110
Q ss_pred hhhhhhccCCCHHHHHHHHhhcCcEEEEeccCCc---hhHHHHHHHh
Q 003284 158 NEAQAESRLSDAETVAKSFVQCSVSLSVICPKQL---PKLTAIYNAA 201 (834)
Q Consensus 158 ~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrql---p~l~~Lfeka 201 (834)
.. .|++.+|+.+.+.||.++.|.--.- ..+.+|-+-|
T Consensus 146 ------~~-~~~~~~a~~l~~~GI~i~tVGiG~~~d~~~~~~L~~ia 185 (193)
T cd01477 146 ------GS-NDPRPIAARLKSTGIAIITVAFTQDESSNLLDKLGKIA 185 (193)
T ss_pred ------CC-CCHHHHHHHHHHCCCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 00 2567889999999999999976652 2355555433
No 15
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=98.68 E-value=4e-07 Score=88.47 Aligned_cols=148 Identities=18% Similarity=0.265 Sum_probs=103.6
Q ss_pred cEEEEEeccccchH-hHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCC--CCHHHHH
Q 003284 5 QLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWT--KDVDIFL 81 (834)
Q Consensus 5 dvVFVID~Tasmg~-yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfT--sd~~~fl 81 (834)
|||||||.+++|+. .|+.+| .+|..+++.|.. .....|++||.|.+..- ..+.|+ .+..+++
T Consensus 1 DivflvD~S~sm~~~~~~~~~-~~v~~~i~~~~~--------~~~~~rv~iv~f~~~~~------~~~~~~~~~~~~~~~ 65 (178)
T PF00092_consen 1 DIVFLVDTSGSMSGDNFEKAK-QFVKSIISRLSI--------SNNGTRVGIVTFSDSAR------VLFSLTDYQSKNDLL 65 (178)
T ss_dssp EEEEEEE-STTSCHHHHHHHH-HHHHHHHHHSTB--------STTSEEEEEEEESSSEE------EEEETTSHSSHHHHH
T ss_pred CEEEEEeCCCCCchHHHHHHH-HHHHHHHHhhhc--------cccccccceeeeecccc------ccccccccccccccc
Confidence 89999999999997 788866 668999998842 22468999999998844 334443 4688999
Q ss_pred HHh-ccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhh
Q 003284 82 HWL-STIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEA 160 (834)
Q Consensus 82 ~~L-d~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~ 160 (834)
..+ +.+.+.||+-. +++||..|++.|.... ...+....|.+|||++..++.-+.
T Consensus 66 ~~i~~~~~~~~g~t~---~~~aL~~a~~~l~~~~----~~~r~~~~~~iiliTDG~~~~~~~------------------ 120 (178)
T PF00092_consen 66 NAINDSIPSSGGGTN---LGAALKFAREQLFSSN----NGGRPNSPKVIILITDGNSNDSDS------------------ 120 (178)
T ss_dssp HHHHTTGGCCBSSB----HHHHHHHHHHHTTSGG----GTTGTTSEEEEEEEESSSSSSHSG------------------
T ss_pred ccccccccccchhhh---HHHHHhhhhhcccccc----cccccccccceEEEEeecccCCcc------------------
Confidence 988 88887776533 8889999998886421 112235678899999998864331
Q ss_pred hhhccCCCHHHHHHHHhhcCcEEEEecc--CCchhHHHHHH
Q 003284 161 QAESRLSDAETVAKSFVQCSVSLSVICP--KQLPKLTAIYN 199 (834)
Q Consensus 161 ~~~~~l~d~e~lA~~~~e~~I~LSvIsP--rqlp~l~~Lfe 199 (834)
..+..++...+.+|.+..|.. .....|++|..
T Consensus 121 -------~~~~~~~~~~~~~i~~~~ig~~~~~~~~l~~la~ 154 (178)
T PF00092_consen 121 -------PSEEAANLKKSNGIKVIAIGIDNADNEELRELAS 154 (178)
T ss_dssp -------HHHHHHHHHHHCTEEEEEEEESCCHHHHHHHHSH
T ss_pred -------hHHHHHHHHHhcCcEEEEEecCcCCHHHHHHHhC
Confidence 123333333336999999998 23466666654
No 16
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=98.62 E-value=9.3e-07 Score=88.37 Aligned_cols=141 Identities=17% Similarity=0.267 Sum_probs=91.8
Q ss_pred ccEEEEEeccccchHh--HHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCccccee-eccCCCCHHHH
Q 003284 4 KQLIVAVEGTAAMGPY--WQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQ-RSGWTKDVDIF 80 (834)
Q Consensus 4 ~dvVFVID~Tasmg~y--i~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~-~~gfTsd~~~f 80 (834)
.|||||||++++|+.. |+.+| .++.-+++.|.-. ....++|||+|.+..- ..+. ...++.+...+
T Consensus 1 ~Dv~~vlD~SgSm~~~~~~~~~k-~~~~~~~~~~~~~--------~~~~~vglv~Fs~~~~---~~~~l~~~~~~~~~~~ 68 (186)
T cd01471 1 LDLYLLVDGSGSIGYSNWVTHVV-PFLHTFVQNLNIS--------PDEINLYLVTFSTNAK---ELIRLSSPNSTNKDLA 68 (186)
T ss_pred CcEEEEEeCCCCccchhhHHHHH-HHHHHHHHhcccC--------CCceEEEEEEecCCce---EEEECCCccccchHHH
Confidence 4999999999999955 55555 5577777777421 1357999999987632 1111 11234456664
Q ss_pred HHHhcc---CccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccc
Q 003284 81 LHWLST---IPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNEN 157 (834)
Q Consensus 81 l~~Ld~---I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~ 157 (834)
+.+++. +.+.||| -.+++||..|.+.+... +....+..|++||++|..+..-.
T Consensus 69 ~~~i~~l~~~~~~~G~---T~l~~aL~~a~~~l~~~-----~~~r~~~~~~villTDG~~~~~~---------------- 124 (186)
T cd01471 69 LNAIRALLSLYYPNGS---TNTTSALLVVEKHLFDT-----RGNRENAPQLVIIMTDGIPDSKF---------------- 124 (186)
T ss_pred HHHHHHHHhCcCCCCC---ccHHHHHHHHHHHhhcc-----CCCcccCceEEEEEccCCCCCCc----------------
Confidence 445544 4444544 46889999998776431 11234567899999998764221
Q ss_pred hhhhhhccCCCHHHHHHHHhhcCcEEEEeccCC
Q 003284 158 NEAQAESRLSDAETVAKSFVQCSVSLSVICPKQ 190 (834)
Q Consensus 158 ~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrq 190 (834)
.+...++.+.+++|.+++|.--.
T Consensus 125 ----------~~~~~a~~l~~~gv~v~~igiG~ 147 (186)
T cd01471 125 ----------RTLKEARKLRERGVIIAVLGVGQ 147 (186)
T ss_pred ----------chhHHHHHHHHCCCEEEEEEeeh
Confidence 22346788899999999998753
No 17
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=98.60 E-value=1.9e-06 Score=80.48 Aligned_cols=138 Identities=17% Similarity=0.232 Sum_probs=96.8
Q ss_pred ccEEEEEeccccc-hHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCC--CHHHH
Q 003284 4 KQLIVAVEGTAAM-GPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTK--DVDIF 80 (834)
Q Consensus 4 ~dvVFVID~Tasm-g~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTs--d~~~f 80 (834)
.||+||||.|++| ..+|+.++ .++.-+++.+... ....+++||.|.+... ....|+. +...+
T Consensus 1 ~~v~~viD~S~Sm~~~~~~~~~-~~~~~~~~~~~~~--------~~~~~i~v~~f~~~~~------~~~~~~~~~~~~~~ 65 (161)
T cd00198 1 ADIVFLLDVSGSMGGEKLDKAK-EALKALVSSLSAS--------PPGDRVGLVTFGSNAR------VVLPLTTDTDKADL 65 (161)
T ss_pred CcEEEEEeCCCCcCcchHHHHH-HHHHHHHHhcccC--------CCCcEEEEEEecCccc------eeecccccCCHHHH
Confidence 4899999999999 67777777 5577777777542 2357999999998422 3344444 77888
Q ss_pred HHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhh
Q 003284 81 LHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEA 160 (834)
Q Consensus 81 l~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~ 160 (834)
...++.+.. +......+.+||..++..+.+.. .....|.+|+|+|..++.-.
T Consensus 66 ~~~~~~~~~--~~~~~t~~~~al~~~~~~~~~~~-------~~~~~~~lvvitDg~~~~~~------------------- 117 (161)
T cd00198 66 LEAIDALKK--GLGGGTNIGAALRLALELLKSAK-------RPNARRVIILLTDGEPNDGP------------------- 117 (161)
T ss_pred HHHHHhccc--CCCCCccHHHHHHHHHHHhcccC-------CCCCceEEEEEeCCCCCCCc-------------------
Confidence 888888876 12233556678888888776421 23356888999987664322
Q ss_pred hhhccCCCHHHHHHHHhhcCcEEEEeccCC
Q 003284 161 QAESRLSDAETVAKSFVQCSVSLSVICPKQ 190 (834)
Q Consensus 161 ~~~~~l~d~e~lA~~~~e~~I~LSvIsPrq 190 (834)
.+.+.+.+.+.+++|.+.+|.-..
T Consensus 118 ------~~~~~~~~~~~~~~v~v~~v~~g~ 141 (161)
T cd00198 118 ------ELLAEAARELRKLGITVYTIGIGD 141 (161)
T ss_pred ------chhHHHHHHHHHcCCEEEEEEcCC
Confidence 134667888889999999987763
No 18
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=98.50 E-value=3.1e-06 Score=95.70 Aligned_cols=174 Identities=11% Similarity=0.061 Sum_probs=122.2
Q ss_pred ccEEEEEeccccchHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCC--Cc-----------------
Q 003284 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGS--YC----------------- 64 (834)
Q Consensus 4 ~dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~--~~----------------- 64 (834)
.||.|++|-|.+|+++++.||+. ...+++.+..- .+++|+|+=.|-|.+- |-
T Consensus 100 vDLYyLMDlS~SM~ddl~~lk~l-g~~L~~~m~~i--------t~n~rlGfGsFVDK~v~P~~~t~p~~l~~PC~~~~~~ 170 (423)
T smart00187 100 VDLYYLMDLSYSMKDDLDNLKSL-GDDLAREMKGL--------TSNFRLGFGSFVDKTVSPFVSTRPEKLENPCPNYNLT 170 (423)
T ss_pred cceEEEEeCCccHHHHHHHHHHH-HHHHHHHHHhc--------ccCceeeEEEeecCccCCcccCCHHHhcCCCcCCCCC
Confidence 69999999999999999999977 67777777541 3468999998888631 11
Q ss_pred ---cc-ceeeccCCCCHHHHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCc-cCCcEEEEeecCCCCC
Q 003284 65 ---AC-LVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNV-DGQRHCILVAASNPHP 139 (834)
Q Consensus 65 ---~~-lv~~~gfTsd~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~-~~qkhCILIa~SpP~~ 139 (834)
.| +-....+|+|.+.|.+.+++...+|+.|.||.=.+||--|..|-+.. -|. ...|..|+++|+++|-
T Consensus 171 c~p~f~f~~~L~LT~~~~~F~~~V~~~~iSgN~D~PEgG~DAimQaaVC~~~I-------GWR~~a~rllv~~TDa~fH~ 243 (423)
T smart00187 171 CEPPYGFKHVLSLTDDTDEFNEEVKKQRISGNLDAPEGGFDAIMQAAVCTEQI-------GWREDARRLLVFSTDAGFHF 243 (423)
T ss_pred cCCCcceeeeccCCCCHHHHHHHHhhceeecCCcCCcccHHHHHHHHhhcccc-------ccCCCceEEEEEEcCCCccc
Confidence 11 11124459999999999999999999999999889988777554321 233 3567789999999996
Q ss_pred CCC------------CcccCCccccccccchhhhhhccCCCHHHHHHHHhhcCcEEE-EeccCCchhHHHHHH
Q 003284 140 LPT------------PVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLS-VICPKQLPKLTAIYN 199 (834)
Q Consensus 140 lp~------------pv~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LS-vIsPrqlp~l~~Lfe 199 (834)
... .|++.. +.+|.++..+ ..-+..+|++.+.|++|.+= +|.-+..+.|++|-+
T Consensus 244 AGDGkLaGIv~PNDg~CHL~~--~g~Yt~s~~~----DYPSi~ql~~kL~e~nI~~IFAVT~~~~~~Y~~Ls~ 310 (423)
T smart00187 244 AGDGKLAGIVQPNDGQCHLDN--NGEYTMSTTQ----DYPSIGQLNQKLAENNINPIFAVTKKQVSLYKELSA 310 (423)
T ss_pred cCCcceeeEecCCCCcceeCC--CCCcCccCcC----CCCCHHHHHHHHHhcCceEEEEEcccchhHHHHHHH
Confidence 554 344321 1122222222 22356999999999999864 466666655544443
No 19
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.44 E-value=7.3e-06 Score=83.76 Aligned_cols=149 Identities=19% Similarity=0.273 Sum_probs=97.6
Q ss_pred ccEEEEEeccccch-------HhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCC----Ccc-----cc
Q 003284 4 KQLIVAVEGTAAMG-------PYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGS----YCA-----CL 67 (834)
Q Consensus 4 ~dvVFVID~Tasmg-------~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~----~~~-----~l 67 (834)
.+||||||+++||. ..|+.+|.- +.-+++.+. ...+++||+|.+... +.. ++
T Consensus 21 ~~vv~vlD~SgSM~~~~~~~~~rl~~ak~a-~~~~l~~l~-----------~~~~v~lv~F~~~~~~~~~~~~~~p~~~~ 88 (206)
T cd01456 21 PNVAIVLDNSGSMREVDGGGETRLDNAKAA-LDETANALP-----------DGTRLGLWTFSGDGDNPLDVRVLVPKGCL 88 (206)
T ss_pred CcEEEEEeCCCCCcCCCCCcchHHHHHHHH-HHHHHHhCC-----------CCceEEEEEecCCCCCCcccccccccccc
Confidence 78999999999997 466666644 444455442 246999999998421 111 11
Q ss_pred e-eeccCC-CCHHHHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcc
Q 003284 68 V-QRSGWT-KDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVY 145 (834)
Q Consensus 68 v-~~~gfT-sd~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~ 145 (834)
. ...++. .+...+...|+.|...+|| -.+.+||..|+.+++ . ...+++|||+|--+..-.
T Consensus 89 ~~~~~~~~~~~~~~l~~~i~~i~~~~G~---T~l~~aL~~a~~~l~--~---------~~~~~iillTDG~~~~~~---- 150 (206)
T cd01456 89 TAPVNGFPSAQRSALDAALNSLQTPTGW---TPLAAALAEAAAYVD--P---------GRVNVVVLITDGEDTCGP---- 150 (206)
T ss_pred ccccCCCCcccHHHHHHHHHhhcCCCCc---ChHHHHHHHHHHHhC--C---------CCcceEEEEcCCCccCCC----
Confidence 1 123443 5889999999999844443 578899999998884 1 113899999987553111
Q ss_pred cCCccccccccchhhhhhccCCCHHHHHHHHhh-----cCcEEEEeccCC---chhHHHHHHHhcCC
Q 003284 146 RPQMQNLDQNENNEAQAESRLSDAETVAKSFVQ-----CSVSLSVICPKQ---LPKLTAIYNAAKRN 204 (834)
Q Consensus 146 ~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e-----~~I~LSvIsPrq---lp~l~~Lfeka~~~ 204 (834)
+....++.+.+ ++|.|++|.--. ...|+.|-+..++.
T Consensus 151 ----------------------~~~~~~~~~~~~~~~~~~i~i~~igiG~~~~~~~l~~iA~~tgG~ 195 (206)
T cd01456 151 ----------------------DPCEVARELAKRRTPAPPIKVNVIDFGGDADRAELEAIAEATGGT 195 (206)
T ss_pred ----------------------CHHHHHHHHHHhcCCCCCceEEEEEecCcccHHHHHHHHHhcCCe
Confidence 23344444444 499999998654 45677777766654
No 20
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.41 E-value=5.2e-06 Score=82.04 Aligned_cols=137 Identities=18% Similarity=0.223 Sum_probs=90.0
Q ss_pred CccEEEEEeccccchHh-H-HHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHH
Q 003284 3 EKQLIVAVEGTAAMGPY-W-QSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIF 80 (834)
Q Consensus 3 ~~dvVFVID~Tasmg~y-i-~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~f 80 (834)
.+|||||||.+++|... | ..-|.++..-++..|... . ...+++||+|.+... ....|+.|...+
T Consensus 2 ~~~vv~vlD~S~SM~~~~~~~~~r~~~a~~~~~~~~~~-~-------~~~~v~lv~f~~~~~------~~~~~~~~~~~~ 67 (180)
T cd01467 2 GRDIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFIDR-R-------ENDRIGLVVFAGAAF------TQAPLTLDRESL 67 (180)
T ss_pred CceEEEEEECCcccccccCCCCCHHHHHHHHHHHHHHh-C-------CCCeEEEEEEcCCee------eccCCCccHHHH
Confidence 37999999999999753 2 011222333334334321 0 236999999976522 346788898888
Q ss_pred HHHhccCcc--CCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccch
Q 003284 81 LHWLSTIPF--AGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENN 158 (834)
Q Consensus 81 l~~Ld~I~f--~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~ 158 (834)
...|+.|.. .||+ ..+.+||..|+.++.... ...+++|||+|-.+..-+
T Consensus 68 ~~~l~~l~~~~~~g~---T~l~~al~~a~~~l~~~~---------~~~~~iiliTDG~~~~g~----------------- 118 (180)
T cd01467 68 KELLEDIKIGLAGQG---TAIGDAIGLAIKRLKNSE---------AKERVIVLLTDGENNAGE----------------- 118 (180)
T ss_pred HHHHHHhhhcccCCC---CcHHHHHHHHHHHHHhcC---------CCCCEEEEEeCCCCCCCC-----------------
Confidence 888888873 2332 467889999998885421 124889999988664211
Q ss_pred hhhhhccCCCHHHHHHHHhhcCcEEEEeccCC
Q 003284 159 EAQAESRLSDAETVAKSFVQCSVSLSVICPKQ 190 (834)
Q Consensus 159 ~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrq 190 (834)
.+++.+++.+.+++|.|++|.-..
T Consensus 119 --------~~~~~~~~~~~~~gi~i~~i~ig~ 142 (180)
T cd01467 119 --------IDPATAAELAKNKGVRIYTIGVGK 142 (180)
T ss_pred --------CCHHHHHHHHHHCCCEEEEEEecC
Confidence 134556777788999999987654
No 21
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=98.41 E-value=2e-05 Score=75.93 Aligned_cols=140 Identities=16% Similarity=0.274 Sum_probs=97.2
Q ss_pred CccEEEEEeccccc-hHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccC--CCCHHH
Q 003284 3 EKQLIVAVEGTAAM-GPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGW--TKDVDI 79 (834)
Q Consensus 3 ~~dvVFVID~Tasm-g~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gf--Tsd~~~ 79 (834)
.+||+||||.|.+| +.+|+.++. ++.-+++.+... ....++++|.|.+... ..+.| +++.+.
T Consensus 1 ~~~v~l~vD~S~SM~~~~~~~~~~-~~~~~~~~~~~~--------~~~~~i~ii~f~~~~~------~~~~~~~~~~~~~ 65 (177)
T smart00327 1 PLDVVFLLDGSGSMGPNRFEKAKE-FVLKLVEQLDIG--------PDGDRVGLVTFSDDAT------VLFPLNDSRSKDA 65 (177)
T ss_pred CccEEEEEeCCCccchHHHHHHHH-HHHHHHHhcCCC--------CCCcEEEEEEeCCCce------EEEcccccCCHHH
Confidence 37999999999999 888877774 466777766431 1257999999998532 23444 899999
Q ss_pred HHHHhccCcc-CCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccch
Q 003284 80 FLHWLSTIPF-AGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENN 158 (834)
Q Consensus 80 fl~~Ld~I~f-~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~ 158 (834)
+...++++.. .+|+ ..+.++|..|+..++.... .......+.+|+|+|..++.-
T Consensus 66 ~~~~i~~~~~~~~~~---~~~~~al~~~~~~~~~~~~----~~~~~~~~~iviitDg~~~~~------------------ 120 (177)
T smart00327 66 LLEALASLSYKLGGG---TNLGAALQYALENLFSKSA----GSRRGAPKVLILITDGESNDG------------------ 120 (177)
T ss_pred HHHHHHhcCCCCCCC---chHHHHHHHHHHHhcCcCC----CCCCCCCeEEEEEcCCCCCCC------------------
Confidence 9999999997 3333 4455666666665531110 011123577888888777522
Q ss_pred hhhhhccCCCHHHHHHHHhhcCcEEEEeccCC
Q 003284 159 EAQAESRLSDAETVAKSFVQCSVSLSVICPKQ 190 (834)
Q Consensus 159 ~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrq 190 (834)
.+.+.+++.+.+++|.+.+|..-.
T Consensus 121 --------~~~~~~~~~~~~~~i~i~~i~~~~ 144 (177)
T smart00327 121 --------GDLLKAAKELKRSGVKVFVVGVGN 144 (177)
T ss_pred --------ccHHHHHHHHHHCCCEEEEEEccC
Confidence 245778888999999999998875
No 22
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=98.37 E-value=6.1e-06 Score=83.67 Aligned_cols=122 Identities=11% Similarity=0.221 Sum_probs=80.8
Q ss_pred ccEEEEEeccccch-HhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCccccee-eccCCCCHHHHH
Q 003284 4 KQLIVAVEGTAAMG-PYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQ-RSGWTKDVDIFL 81 (834)
Q Consensus 4 ~dvVFVID~Tasmg-~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~-~~gfTsd~~~fl 81 (834)
.|||||||++++|+ .-|+.+| .-|.-+++.+.... ...++|||+|.+... ..+. +..++.|...++
T Consensus 1 ~di~~vlD~SgSM~~~~~~~~k-~~~~~l~~~l~~~~--------~~~~v~li~Fs~~~~---~~~~~~~~~~~~~~~~~ 68 (198)
T cd01470 1 LNIYIALDASDSIGEEDFDEAK-NAIKTLIEKISSYE--------VSPRYEIISYASDPK---EIVSIRDFNSNDADDVI 68 (198)
T ss_pred CcEEEEEECCCCccHHHHHHHH-HHHHHHHHHccccC--------CCceEEEEEecCCce---EEEecccCCCCCHHHHH
Confidence 48999999999997 5666666 34666666663211 246999999998733 1111 223566789999
Q ss_pred HHhccCccCCCC-CchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCC
Q 003284 82 HWLSTIPFAGGG-FNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPH 138 (834)
Q Consensus 82 ~~Ld~I~f~GGG-~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~ 138 (834)
.+|+.+.+.+++ ...-.+++||..+++.++.... .....+....+.+|||+|--|.
T Consensus 69 ~~l~~~~~~~~~~~ggT~~~~Al~~~~~~l~~~~~-~~~~~~~~~~~~iillTDG~~~ 125 (198)
T cd01470 69 KRLEDFNYDDHGDKTGTNTAAALKKVYERMALEKV-RNKEAFNETRHVIILFTDGKSN 125 (198)
T ss_pred HHHHhCCcccccCccchhHHHHHHHHHHHHHHHHh-cCccchhhcceEEEEEcCCCcC
Confidence 999999876654 2346788999888876642111 0111223456778999988765
No 23
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=98.35 E-value=2.1e-05 Score=80.71 Aligned_cols=148 Identities=20% Similarity=0.184 Sum_probs=99.5
Q ss_pred cEEEEEeccccchH------hHHHHHHHHHHHHH-HHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCH
Q 003284 5 QLIVAVEGTAAMGP------YWQSIVSDYLEKII-RCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDV 77 (834)
Q Consensus 5 dvVFVID~Tasmg~------yi~~lkt~YI~p~l-e~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~ 77 (834)
-+|||||.+.+|.. =|+..| +++.-++ +||... ...++|||+|++... . ...+.|.|.
T Consensus 5 a~vi~lD~S~sM~a~D~~PnRL~aak-~~i~~~~~~f~~~n---------p~~~vGlv~fag~~a----~-v~~plT~D~ 69 (187)
T cd01452 5 ATMICIDNSEYMRNGDYPPTRFQAQA-DAVNLICQAKTRSN---------PENNVGLMTMAGNSP----E-VLVTLTNDQ 69 (187)
T ss_pred EEEEEEECCHHHHcCCCCCCHHHHHH-HHHHHHHHHHHhcC---------CCccEEEEEecCCce----E-EEECCCCCH
Confidence 47999999999852 244444 3355555 444432 235999999998533 2 457889999
Q ss_pred HHHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccc
Q 003284 78 DIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNEN 157 (834)
Q Consensus 78 ~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~ 157 (834)
..++..|+.|... ...++.+||..|+..|...... ...+|.+|+|+ |+=. +
T Consensus 70 ~~~~~~L~~i~~~----g~~~l~~AL~~A~~~L~~~~~~------~~~~rivi~v~-S~~~-----~------------- 120 (187)
T cd01452 70 GKILSKLHDVQPK----GKANFITGIQIAQLALKHRQNK------NQKQRIVAFVG-SPIE-----E------------- 120 (187)
T ss_pred HHHHHHHHhCCCC----CcchHHHHHHHHHHHHhcCCCc------CCcceEEEEEe-cCCc-----C-------------
Confidence 9999999999853 2357889999999888543211 11124344443 3211 0
Q ss_pred hhhhhhccCCCHHHHHHHHhhcCcEEEEeccCC----chhHHHHHHHhcC
Q 003284 158 NEAQAESRLSDAETVAKSFVQCSVSLSVICPKQ----LPKLTAIYNAAKR 203 (834)
Q Consensus 158 ~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrq----lp~l~~Lfeka~~ 203 (834)
.-.+...+++.++++||.++||+--. .++|++++++...
T Consensus 121 -------d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~~ 163 (187)
T cd01452 121 -------DEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVNG 163 (187)
T ss_pred -------CHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhcC
Confidence 01246789999999999999998763 4888888887643
No 24
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=98.31 E-value=1e-05 Score=94.43 Aligned_cols=138 Identities=18% Similarity=0.257 Sum_probs=86.4
Q ss_pred CccEEEEEeccccch-HhH-HHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCC----C
Q 003284 3 EKQLIVAVEGTAAMG-PYW-QSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTK----D 76 (834)
Q Consensus 3 ~~dvVFVID~Tasmg-~yi-~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTs----d 76 (834)
+.||+||||+++||+ +.| +.+| ..+..++..|.. ....++++||+|.+..- ..+.+++ |
T Consensus 42 ~lDIvFLLD~SgSMg~~Nfle~AK-~Fa~~LV~~l~I--------s~D~V~VgiV~FSd~~r------~vfpL~s~~s~D 106 (576)
T PTZ00441 42 EVDLYLLVDGSGSIGYHNWITHVI-PMLMGLIQQLNL--------SDDAINLYMSLFSNNTT------ELIRLGSGASKD 106 (576)
T ss_pred CceEEEEEeCCCccCCccHHHHHH-HHHHHHHHHhcc--------CCCceEEEEEEeCCCce------EEEecCCCcccc
Confidence 589999999999998 555 3333 445556666632 12468999999987732 2334433 3
Q ss_pred HHHHHHHh---ccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccc
Q 003284 77 VDIFLHWL---STIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLD 153 (834)
Q Consensus 77 ~~~fl~~L---d~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~ 153 (834)
....+..| ......||| -.+.+||..|.+.+... ....++.|++|||+|--+...
T Consensus 107 k~~aL~~I~sL~~~~~pgGg---Tnig~AL~~Aae~L~sr------~~R~nvpKVVILLTDG~sns~------------- 164 (576)
T PTZ00441 107 KEQALIIVKSLRKTYLPYGK---TNMTDALLEVRKHLNDR------VNRENAIQLVILMTDGIPNSK------------- 164 (576)
T ss_pred HHHHHHHHHHHHhhccCCCC---ccHHHHHHHHHHHHhhc------ccccCCceEEEEEecCCCCCc-------------
Confidence 23444433 333345554 44677777777666421 123456799999998776421
Q ss_pred cccchhhhhhccCCCHHHHHHHHhhcCcEEEEeccCC
Q 003284 154 QNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQ 190 (834)
Q Consensus 154 ~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrq 190 (834)
.++...|+.+.++||.|++|---.
T Consensus 165 -------------~dvleaAq~LR~~GVeI~vIGVG~ 188 (576)
T PTZ00441 165 -------------YRALEESRKLKDRNVKLAVIGIGQ 188 (576)
T ss_pred -------------ccHHHHHHHHHHCCCEEEEEEeCC
Confidence 134456778888888888887654
No 25
>PRK13685 hypothetical protein; Provisional
Probab=98.28 E-value=2.6e-05 Score=85.82 Aligned_cols=158 Identities=13% Similarity=0.117 Sum_probs=101.2
Q ss_pred ccEEEEEeccccchH------hHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCH
Q 003284 4 KQLIVAVEGTAAMGP------YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDV 77 (834)
Q Consensus 4 ~dvVFVID~Tasmg~------yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~ 77 (834)
.|||||||.++||.. -++.+|.. +..+++.+.. ..++|||+|.+... ...++|.|.
T Consensus 89 ~~vvlvlD~S~SM~~~D~~p~RL~~ak~~-~~~~l~~l~~-----------~d~vglv~Fa~~a~------~~~p~t~d~ 150 (326)
T PRK13685 89 AVVMLVIDVSQSMRATDVEPNRLAAAQEA-AKQFADELTP-----------GINLGLIAFAGTAT------VLVSPTTNR 150 (326)
T ss_pred ceEEEEEECCccccCCCCCCCHHHHHHHH-HHHHHHhCCC-----------CCeEEEEEEcCcee------ecCCCCCCH
Confidence 589999999999984 46666644 4444554421 35899999998732 335789999
Q ss_pred HHHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccc
Q 003284 78 DIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNEN 157 (834)
Q Consensus 78 ~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~ 157 (834)
+.+...|+++...||- ++.+||..|++.++.... ..........+++||++|-....-..++
T Consensus 151 ~~l~~~l~~l~~~~~T----~~g~al~~A~~~l~~~~~-~~~~~~~~~~~~IILlTDG~~~~~~~~~------------- 212 (326)
T PRK13685 151 EATKNAIDKLQLADRT----ATGEAIFTALQAIATVGA-VIGGGDTPPPARIVLMSDGKETVPTNPD------------- 212 (326)
T ss_pred HHHHHHHHhCCCCCCc----chHHHHHHHHHHHHhhhc-ccccccCCCCCEEEEEcCCCCCCCCCCC-------------
Confidence 9999999999965432 345666666666542110 0000112235789999987543211110
Q ss_pred hhhhhhccCCCHHHHHHHHhhcCcEEEEeccCC-----------------chhHHHHHHHhcCC
Q 003284 158 NEAQAESRLSDAETVAKSFVQCSVSLSVICPKQ-----------------LPKLTAIYNAAKRN 204 (834)
Q Consensus 158 ~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrq-----------------lp~l~~Lfeka~~~ 204 (834)
...+....++.+.+++|.+++|.--. -..|++|-+++++.
T Consensus 213 -------~~~~~~~aa~~a~~~gi~i~~Ig~G~~~g~~~~~g~~~~~~~d~~~L~~iA~~tgG~ 269 (326)
T PRK13685 213 -------NPRGAYTAARTAKDQGVPISTISFGTPYGSVEINGQRQPVPVDDESLKKIAQLSGGE 269 (326)
T ss_pred -------CcccHHHHHHHHHHcCCeEEEEEECCCCCCcCcCCceeeecCCHHHHHHHHHhcCCE
Confidence 01134567888899999999997432 24677777766654
No 26
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=98.27 E-value=1.2e-05 Score=77.94 Aligned_cols=145 Identities=17% Similarity=0.262 Sum_probs=93.8
Q ss_pred ccEEEEEeccccchHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCC-CcccceeeccCCCCHHHHHH
Q 003284 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGS-YCACLVQRSGWTKDVDIFLH 82 (834)
Q Consensus 4 ~dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~-~~~~lv~~~gfTsd~~~fl~ 82 (834)
+|||||||.+++|..++ .+.++-|.-+|+.+.. ..+|.||.|++... +...++... ......+++
T Consensus 1 ~~vvilvD~S~Sm~g~~-~~~k~al~~~l~~L~~-----------~d~fnii~f~~~~~~~~~~~~~~~--~~~~~~a~~ 66 (155)
T PF13768_consen 1 ADVVILVDTSGSMSGEK-ELVKDALRAILRSLPP-----------GDRFNIIAFGSSVRPLFPGLVPAT--EENRQEALQ 66 (155)
T ss_pred CeEEEEEeCCCCCCCcH-HHHHHHHHHHHHhCCC-----------CCEEEEEEeCCEeeEcchhHHHHh--HHHHHHHHH
Confidence 58999999999999998 5555556666776643 45999999999743 111111111 245678899
Q ss_pred HhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhhhh
Q 003284 83 WLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQA 162 (834)
Q Consensus 83 ~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~~~ 162 (834)
|++.++..+|| ..+.+||.+|+..+.. ....+++|||+|..|..-.
T Consensus 67 ~I~~~~~~~G~---t~l~~aL~~a~~~~~~----------~~~~~~IilltDG~~~~~~--------------------- 112 (155)
T PF13768_consen 67 WIKSLEANSGG---TDLLAALRAALALLQR----------PGCVRAIILLTDGQPVSGE--------------------- 112 (155)
T ss_pred HHHHhcccCCC---ccHHHHHHHHHHhccc----------CCCccEEEEEEeccCCCCH---------------------
Confidence 99999984444 4566777777776521 3357999999988773211
Q ss_pred hccCCCHHHHHHHH--hhcCcEEEEeccCC---chhHHHHHHHhcC
Q 003284 163 ESRLSDAETVAKSF--VQCSVSLSVICPKQ---LPKLTAIYNAAKR 203 (834)
Q Consensus 163 ~~~l~d~e~lA~~~--~e~~I~LSvIsPrq---lp~l~~Lfeka~~ 203 (834)
+.+.+.+ ..+.|.++.+.--. ...|++|-+..++
T Consensus 113 -------~~i~~~v~~~~~~~~i~~~~~g~~~~~~~L~~LA~~~~G 151 (155)
T PF13768_consen 113 -------EEILDLVRRARGHIRIFTFGIGSDADADFLRELARATGG 151 (155)
T ss_pred -------HHHHHHHHhcCCCceEEEEEECChhHHHHHHHHHHcCCC
Confidence 1222222 22568888776554 3667777665554
No 27
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=98.25 E-value=2.9e-05 Score=77.72 Aligned_cols=152 Identities=15% Similarity=0.197 Sum_probs=97.7
Q ss_pred EEEEEeccccchHh--HHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHHHHH
Q 003284 6 LIVAVEGTAAMGPY--WQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHW 83 (834)
Q Consensus 6 vVFVID~Tasmg~y--i~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~fl~~ 83 (834)
||||||+++||+.. |+.+| -+++.|....+ ....+++||+|.+... ...+++|.+...+..+
T Consensus 3 v~lvlD~SgSM~~~~rl~~ak-----~a~~~~~~~~~------~~~d~v~lv~F~~~~~-----~~~~~~t~~~~~~~~~ 66 (178)
T cd01451 3 VIFVVDASGSMAARHRMAAAK-----GAVLSLLRDAY------QRRDKVALIAFRGTEA-----EVLLPPTRSVELAKRR 66 (178)
T ss_pred EEEEEECCccCCCccHHHHHH-----HHHHHHHHHhh------cCCCEEEEEEECCCCc-----eEEeCCCCCHHHHHHH
Confidence 79999999999852 33333 34444432111 1246999999986522 1245688899999999
Q ss_pred hccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhhhhh
Q 003284 84 LSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAE 163 (834)
Q Consensus 84 Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~~~~ 163 (834)
|+.+... |+ -.+.+||..|++.+.... ......+.+|||+|-.+..-..++
T Consensus 67 l~~l~~~-G~---T~l~~aL~~a~~~l~~~~------~~~~~~~~ivliTDG~~~~g~~~~------------------- 117 (178)
T cd01451 67 LARLPTG-GG---TPLAAGLLAAYELAAEQA------RDPGQRPLIVVITDGRANVGPDPT------------------- 117 (178)
T ss_pred HHhCCCC-CC---CcHHHHHHHHHHHHHHHh------cCCCCceEEEEECCCCCCCCCCch-------------------
Confidence 9999753 33 466777777776651100 001124889999987654211110
Q ss_pred ccCCCH-HHHHHHHhhcCcEEEEeccCC----chhHHHHHHHhcCCC
Q 003284 164 SRLSDA-ETVAKSFVQCSVSLSVICPKQ----LPKLTAIYNAAKRNP 205 (834)
Q Consensus 164 ~~l~d~-e~lA~~~~e~~I~LSvIsPrq----lp~l~~Lfeka~~~~ 205 (834)
... ..+++.+.+.+|.+.+|.... -..|++|-++.++.-
T Consensus 118 ---~~~~~~~~~~l~~~gi~v~~I~~~~~~~~~~~l~~iA~~tgG~~ 161 (178)
T cd01451 118 ---ADRALAAARKLRARGISALVIDTEGRPVRRGLAKDLARALGGQY 161 (178)
T ss_pred ---hHHHHHHHHHHHhcCCcEEEEeCCCCccCccHHHHHHHHcCCeE
Confidence 012 667888999999999998764 246888888877653
No 28
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=98.23 E-value=1.4e-05 Score=80.69 Aligned_cols=115 Identities=13% Similarity=0.182 Sum_probs=71.6
Q ss_pred ccEEEEEeccccchH-hHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeec------cCCCC
Q 003284 4 KQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRS------GWTKD 76 (834)
Q Consensus 4 ~dvVFVID~Tasmg~-yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~------gfTsd 76 (834)
+|||||||+++||.. -|+.+| +-+.-+++.|. ..-+++||.|.+... .++.++ .++.+
T Consensus 14 ~~vv~llD~SgSM~~~~l~~ak-~~~~~ll~~l~-----------~~d~v~lv~F~~~~~---~~~~~~~~~~~~~~~~~ 78 (190)
T cd01463 14 KDIVILLDVSGSMTGQRLHLAK-QTVSSILDTLS-----------DNDFFNIITFSNEVN---PVVPCFNDTLVQATTSN 78 (190)
T ss_pred ceEEEEEECCCCCCcHHHHHHH-HHHHHHHHhCC-----------CCCEEEEEEeCCCee---EEeeecccceEecCHHH
Confidence 899999999999974 343333 22334444442 235899999999844 222111 13457
Q ss_pred HHHHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCC
Q 003284 77 VDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNP 137 (834)
Q Consensus 77 ~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP 137 (834)
...++.+|+.|...|| ..+.+||.+|+..+...........+....+++|||+|--+
T Consensus 79 ~~~~~~~l~~l~~~G~----T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~ 135 (190)
T cd01463 79 KKVLKEALDMLEAKGI----ANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVP 135 (190)
T ss_pred HHHHHHHHhhCCCCCc----chHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCC
Confidence 8899999999997543 34667777777666431100111122345688999998765
No 29
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=98.20 E-value=4.7e-05 Score=74.17 Aligned_cols=149 Identities=15% Similarity=0.149 Sum_probs=90.0
Q ss_pred cEEEEEeccccchH-hHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCC--CCHHHHH
Q 003284 5 QLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWT--KDVDIFL 81 (834)
Q Consensus 5 dvVFVID~Tasmg~-yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfT--sd~~~fl 81 (834)
+||||||+|++|+. .|+.+|.- +.-+++.+.. ..+++||+|.+... ..+.|+ .|...++
T Consensus 2 ~~~~vlD~S~SM~~~~~~~~k~a-~~~~~~~l~~-----------~~~v~li~f~~~~~------~~~~~~~~~~~~~l~ 63 (170)
T cd01465 2 NLVFVIDRSGSMDGPKLPLVKSA-LKLLVDQLRP-----------DDRLAIVTYDGAAE------TVLPATPVRDKAAIL 63 (170)
T ss_pred cEEEEEECCCCCCChhHHHHHHH-HHHHHHhCCC-----------CCEEEEEEecCCcc------EEecCcccchHHHHH
Confidence 79999999999964 36666643 4444444422 35899999998633 123343 4678888
Q ss_pred HHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhhh
Q 003284 82 HWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQ 161 (834)
Q Consensus 82 ~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~~ 161 (834)
..|+++...| + ..+.+||..|+..+..... ....+++||++|..+..-+..
T Consensus 64 ~~l~~~~~~g-~---T~~~~al~~a~~~~~~~~~-------~~~~~~ivl~TDG~~~~~~~~------------------ 114 (170)
T cd01465 64 AAIDRLTAGG-S---TAGGAGIQLGYQEAQKHFV-------PGGVNRILLATDGDFNVGETD------------------ 114 (170)
T ss_pred HHHHcCCCCC-C---CCHHHHHHHHHHHHHhhcC-------CCCeeEEEEEeCCCCCCCCCC------------------
Confidence 8898887533 3 2345555555554432110 112378999999877522110
Q ss_pred hhccCCCHHHHHHHHhhcCcEEEEeccCC---chhHHHHHHHhcCC
Q 003284 162 AESRLSDAETVAKSFVQCSVSLSVICPKQ---LPKLTAIYNAAKRN 204 (834)
Q Consensus 162 ~~~~l~d~e~lA~~~~e~~I~LSvIsPrq---lp~l~~Lfeka~~~ 204 (834)
+ .++..+++.+.+++|.+++|.--. ...|++|-...++.
T Consensus 115 ---~-~~~~~~~~~~~~~~v~i~~i~~g~~~~~~~l~~ia~~~~g~ 156 (170)
T cd01465 115 ---P-DELARLVAQKRESGITLSTLGFGDNYNEDLMEAIADAGNGN 156 (170)
T ss_pred ---H-HHHHHHHHHhhcCCeEEEEEEeCCCcCHHHHHHHHhcCCce
Confidence 0 123444555667899999987753 35566666544443
No 30
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=98.19 E-value=3.3e-05 Score=82.37 Aligned_cols=157 Identities=13% Similarity=0.175 Sum_probs=109.7
Q ss_pred ccEEEEEeccccchHh--HHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHHH
Q 003284 4 KQLIVAVEGTAAMGPY--WQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFL 81 (834)
Q Consensus 4 ~dvVFVID~Tasmg~y--i~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~fl 81 (834)
..||||||+++||..+ +...|--. .-+|+.-+. .+.++|||.|+.++. + -...+|+|++.+.
T Consensus 79 ~lvvfvVDASgSM~~~~Rm~aaKG~~-~~lL~dAYq----------~RdkvavI~F~G~~A--~---lll~pT~sv~~~~ 142 (261)
T COG1240 79 NLIVFVVDASGSMAARRRMAAAKGAA-LSLLRDAYQ----------RRDKVAVIAFRGEKA--E---LLLPPTSSVELAE 142 (261)
T ss_pred CcEEEEEeCcccchhHHHHHHHHHHH-HHHHHHHHH----------ccceEEEEEecCCcc--e---EEeCCcccHHHHH
Confidence 6899999999999999 99888663 444443333 478999999998865 2 2478999999999
Q ss_pred HHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhhh
Q 003284 82 HWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQ 161 (834)
Q Consensus 82 ~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~~ 161 (834)
+||..+..-|+ . =+++||-.|.++|.+..- ...+...+.|+|+|-=|- .+. +.
T Consensus 143 ~~L~~l~~GG~--T--PL~~aL~~a~ev~~r~~r-----~~p~~~~~~vviTDGr~n---~~~----------~~----- 195 (261)
T COG1240 143 RALERLPTGGK--T--PLADALRQAYEVLAREKR-----RGPDRRPVMVVITDGRAN---VPI----------PL----- 195 (261)
T ss_pred HHHHhCCCCCC--C--chHHHHHHHHHHHHHhhc-----cCCCcceEEEEEeCCccC---CCC----------CC-----
Confidence 99999984332 2 267888888888864221 112345677888876421 010 00
Q ss_pred hhccCCCHHHHHHHHhhcCcEEEEeccCC----chhHHHHHHHhcCCC
Q 003284 162 AESRLSDAETVAKSFVQCSVSLSVICPKQ----LPKLTAIYNAAKRNP 205 (834)
Q Consensus 162 ~~~~l~d~e~lA~~~~e~~I~LSvIsPrq----lp~l~~Lfeka~~~~ 205 (834)
.-..+....|..+.+|++.+.||--.. +-..++|....+++-
T Consensus 196 --~~~~e~~~~a~~~~~~g~~~lvid~e~~~~~~g~~~~iA~~~Gg~~ 241 (261)
T COG1240 196 --GPKAETLEAASKLRLRGIQLLVIDTEGSEVRLGLAEEIARASGGEY 241 (261)
T ss_pred --chHHHHHHHHHHHhhcCCcEEEEecCCccccccHHHHHHHHhCCeE
Confidence 001356778888999999999997653 456677777777664
No 31
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=98.17 E-value=5e-05 Score=81.83 Aligned_cols=153 Identities=14% Similarity=0.162 Sum_probs=102.3
Q ss_pred ccEEEEEeccccchHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHHHHH
Q 003284 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHW 83 (834)
Q Consensus 4 ~dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~fl~~ 83 (834)
.+||||||++++|...|..+|.- +..+++.+.. ...+++||.|.+... ..+.||.|...+...
T Consensus 54 ~~vvlvlD~SgSM~~~~~~a~~a-~~~~l~~~l~----------~~d~v~lv~f~~~~~------~~~~~t~~~~~l~~~ 116 (296)
T TIGR03436 54 LTVGLVIDTSGSMRNDLDRARAA-AIRFLKTVLR----------PNDRVFVVTFNTRLR------LLQDFTSDPRLLEAA 116 (296)
T ss_pred ceEEEEEECCCCchHHHHHHHHH-HHHHHHhhCC----------CCCEEEEEEeCCcee------EeecCCCCHHHHHHH
Confidence 68999999999999988777744 4455544211 346999999997521 236899999999999
Q ss_pred hccCccCC-------CC----CchhhHHHHHHHH-HhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccc
Q 003284 84 LSTIPFAG-------GG----FNDAAIAEGLSEA-LMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQN 151 (834)
Q Consensus 84 Ld~I~f~G-------GG----~~~~AvaEGLa~A-L~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~ 151 (834)
|+.+.... |. .+..++.+||..| ++++..... .....|.+|||++.....
T Consensus 117 l~~l~~~~~~~~~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~------~~p~rk~iIllTDG~~~~------------ 178 (296)
T TIGR03436 117 LNRLKPPLRTDYNSSGAFVRDGGGTALYDAITLAALEQLANALA------GIPGRKALIVISDGGDNR------------ 178 (296)
T ss_pred HHhccCCCccccccccccccCCCcchhHHHHHHHHHHHHHHhhc------CCCCCeEEEEEecCCCcc------------
Confidence 99998621 00 1234677776444 444432110 012357889998763210
Q ss_pred cccccchhhhhhccCCCHHHHHHHHhhcCcEEEEeccCCc----------------hhHHHHHHHhcCC
Q 003284 152 LDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQL----------------PKLTAIYNAAKRN 204 (834)
Q Consensus 152 ~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrql----------------p~l~~Lfeka~~~ 204 (834)
...+.+.+++.+.+.+|.+++|....+ ..|++|-+..++.
T Consensus 179 -------------~~~~~~~~~~~~~~~~v~vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~ 234 (296)
T TIGR03436 179 -------------SRDTLERAIDAAQRADVAIYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGGR 234 (296)
T ss_pred -------------hHHHHHHHHHHHHHcCCEEEEeccCccccCCcccccccCCCcHHHHHHHHHHhCCe
Confidence 012457788888999999999987632 4688888877765
No 32
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=98.14 E-value=5.2e-05 Score=75.28 Aligned_cols=157 Identities=10% Similarity=0.110 Sum_probs=98.3
Q ss_pred cEEEEEeccccchH--hHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCC--CCcccceeeccCCCCH-HH
Q 003284 5 QLIVAVEGTAAMGP--YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHG--SYCACLVQRSGWTKDV-DI 79 (834)
Q Consensus 5 dvVFVID~Tasmg~--yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~--~~~~~lv~~~gfTsd~-~~ 79 (834)
-|+|+||+++||.. .|+.+|.- +.-+++.+.. ...+++||.|.+.. .....++....|+.+. ..
T Consensus 2 ~v~~llD~SgSM~~~~kl~~ak~a-~~~l~~~l~~----------~~d~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (174)
T cd01454 2 AVTLLLDLSGSMRSDRRIDVAKKA-AVLLAEALEA----------CGVPHAILGFTTDAGGRERVRWIKIKDFDESLHER 70 (174)
T ss_pred EEEEEEECCCCCCCCcHHHHHHHH-HHHHHHHHHH----------cCCcEEEEEecCCCCCccceEEEEecCcccccchh
Confidence 48999999999988 67777754 3344444432 23689999999873 2111222333555543 35
Q ss_pred HHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchh
Q 003284 80 FLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNE 159 (834)
Q Consensus 80 fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~ 159 (834)
....|+.+.. || ...+.+||..|++.+... ....|++|||+|--|..-... . ++
T Consensus 71 ~~~~l~~~~~--~g--~T~~~~al~~a~~~l~~~---------~~~~~~iiliTDG~~~~~~~~--~--------~~--- 124 (174)
T cd01454 71 ARKRLAALSP--GG--NTRDGAAIRHAAERLLAR---------PEKRKILLVISDGEPNDLDYY--E--------GN--- 124 (174)
T ss_pred HHHHHHccCC--CC--CCcHHHHHHHHHHHHhcC---------CCcCcEEEEEeCCCcCccccc--C--------cc---
Confidence 6677777764 22 356788899998887532 123689999999987643311 0 00
Q ss_pred hhhhccCCCHHHHHHHHhhcCcEEEEeccCC------chhHHHHHHHh
Q 003284 160 AQAESRLSDAETVAKSFVQCSVSLSVICPKQ------LPKLTAIYNAA 201 (834)
Q Consensus 160 ~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrq------lp~l~~Lfeka 201 (834)
...+.|+...++++.+.||.+++|---. .+.++++|++-
T Consensus 125 ---~~~~~~~~~~~~~~~~~gi~v~~igig~~~~~~~~~~~~~~~~~~ 169 (174)
T cd01454 125 ---VFATEDALRAVIEARKLGIEVFGITIDRDATTVDKEYLKNIFGEE 169 (174)
T ss_pred ---hhHHHHHHHHHHHHHhCCcEEEEEEecCccccchHHHHHHhhCcc
Confidence 0011122223788889999999885442 56788888754
No 33
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=98.09 E-value=5.9e-05 Score=73.39 Aligned_cols=148 Identities=11% Similarity=0.133 Sum_probs=94.9
Q ss_pred CccEEEEEeccccchHh-HHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeec-c-CCCCHHH
Q 003284 3 EKQLIVAVEGTAAMGPY-WQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRS-G-WTKDVDI 79 (834)
Q Consensus 3 ~~dvVFVID~Tasmg~y-i~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~-g-fTsd~~~ 79 (834)
.+||+||||+++||..+ |+.++. .|..+++.+.. ..+++||+|.+..- .+...+ . -..+...
T Consensus 2 ~~~v~~vlD~S~SM~~~~~~~~~~-al~~~l~~l~~-----------~~~~~l~~Fs~~~~---~~~~~~~~~~~~~~~~ 66 (171)
T cd01461 2 PKEVVFVIDTSGSMSGTKIEQTKE-ALLTALKDLPP-----------GDYFNIIGFSDTVE---EFSPSSVSATAENVAA 66 (171)
T ss_pred CceEEEEEECCCCCCChhHHHHHH-HHHHHHHhCCC-----------CCEEEEEEeCCCce---eecCcceeCCHHHHHH
Confidence 47999999999999755 666664 45666666532 24799999977522 111111 1 1234567
Q ss_pred HHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchh
Q 003284 80 FLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNE 159 (834)
Q Consensus 80 fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~ 159 (834)
++.+|+.+.. ||| ..+.+||..|+..+.+. ....+.+|||+|-.+..-
T Consensus 67 ~~~~l~~~~~-~g~---T~l~~al~~a~~~l~~~---------~~~~~~iillTDG~~~~~------------------- 114 (171)
T cd01461 67 AIEYVNRLQA-LGG---TNMNDALEAALELLNSS---------PGSVPQIILLTDGEVTNE------------------- 114 (171)
T ss_pred HHHHHHhcCC-CCC---cCHHHHHHHHHHhhccC---------CCCccEEEEEeCCCCCCH-------------------
Confidence 7888888877 443 45778888888777531 234689999998763210
Q ss_pred hhhhccCCCHHHHHHHHhhcCcEEEEeccC---CchhHHHHHHHhcCC
Q 003284 160 AQAESRLSDAETVAKSFVQCSVSLSVICPK---QLPKLTAIYNAAKRN 204 (834)
Q Consensus 160 ~~~~~~l~d~e~lA~~~~e~~I~LSvIsPr---qlp~l~~Lfeka~~~ 204 (834)
.++...++...+.+|.++.|.-. ..+.|+.|-++.++.
T Consensus 115 -------~~~~~~~~~~~~~~i~i~~i~~g~~~~~~~l~~ia~~~gG~ 155 (171)
T cd01461 115 -------SQILKNVREALSGRIRLFTFGIGSDVNTYLLERLAREGRGI 155 (171)
T ss_pred -------HHHHHHHHHhcCCCceEEEEEeCCccCHHHHHHHHHcCCCe
Confidence 02233444444568999888764 357788888777654
No 34
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=98.09 E-value=5.1e-05 Score=74.42 Aligned_cols=145 Identities=17% Similarity=0.161 Sum_probs=88.3
Q ss_pred ccEEEEEeccccchHh-HHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCC-CCHHHHH
Q 003284 4 KQLIVAVEGTAAMGPY-WQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWT-KDVDIFL 81 (834)
Q Consensus 4 ~dvVFVID~Tasmg~y-i~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfT-sd~~~fl 81 (834)
.|||||||++++|... |+.+|. -|.-+++.+. ...++|||+|.+..-.-.++ ..++ .+...+.
T Consensus 1 ~~v~~vlD~S~SM~~~rl~~ak~-a~~~l~~~l~-----------~~~~~~li~F~~~~~~~~~~---~~~~~~~~~~~~ 65 (155)
T cd01466 1 VDLVAVLDVSGSMAGDKLQLVKH-ALRFVISSLG-----------DADRLSIVTFSTSAKRLSPL---RRMTAKGKRSAK 65 (155)
T ss_pred CcEEEEEECCCCCCcHHHHHHHH-HHHHHHHhCC-----------CcceEEEEEecCCccccCCC---cccCHHHHHHHH
Confidence 4899999999999864 444432 2333344332 23589999999863311111 1122 2457888
Q ss_pred HHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhhh
Q 003284 82 HWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQ 161 (834)
Q Consensus 82 ~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~~ 161 (834)
.+|++|...|| -.+.+||..|++++.... .....+++|||+|-.+..-.
T Consensus 66 ~~i~~~~~~g~----T~~~~al~~a~~~~~~~~-------~~~~~~~iillTDG~~~~~~-------------------- 114 (155)
T cd01466 66 RVVDGLQAGGG----TNVVGGLKKALKVLGDRR-------QKNPVASIMLLSDGQDNHGA-------------------- 114 (155)
T ss_pred HHHHhccCCCC----ccHHHHHHHHHHHHhhcc-------cCCCceEEEEEcCCCCCcch--------------------
Confidence 89999875332 467778888887775311 11235789999987652110
Q ss_pred hhccCCCHHHHHHHHhhcCcEEEEeccC---CchhHHHHHHHhcCC
Q 003284 162 AESRLSDAETVAKSFVQCSVSLSVICPK---QLPKLTAIYNAAKRN 204 (834)
Q Consensus 162 ~~~~l~d~e~lA~~~~e~~I~LSvIsPr---qlp~l~~Lfeka~~~ 204 (834)
......+.+|.+++|.-- ....|++|-+..++.
T Consensus 115 ----------~~~~~~~~~v~v~~igig~~~~~~~l~~iA~~t~G~ 150 (155)
T cd01466 115 ----------VVLRADNAPIPIHTFGLGASHDPALLAFIAEITGGT 150 (155)
T ss_pred ----------hhhcccCCCceEEEEecCCCCCHHHHHHHHhccCce
Confidence 011234578999988765 346677777766544
No 35
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.05 E-value=3.7e-05 Score=76.64 Aligned_cols=154 Identities=15% Similarity=0.135 Sum_probs=87.9
Q ss_pred CCCccEEEEEeccccchH-hHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHH
Q 003284 1 MSEKQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDI 79 (834)
Q Consensus 1 ~~~~dvVFVID~Tasmg~-yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~ 79 (834)
|-..+||||||+++||+. .|+.++.- +.-+++.+...+ +...+.+++||.|.+..- ..+++|...+.
T Consensus 1 ~~~~~v~~llD~SgSM~~~~~~~~k~a-~~~~~~~l~~~~-----~~~~~~~v~ii~F~~~a~------~~~~l~~~~~~ 68 (176)
T cd01464 1 MRRLPIYLLLDTSGSMAGEPIEALNQG-LQMLQSELRQDP-----YALESVEISVITFDSAAR------VIVPLTPLESF 68 (176)
T ss_pred CCCCCEEEEEECCCCCCChHHHHHHHH-HHHHHHHHhcCh-----hhccccEEEEEEecCCce------EecCCccHHhc
Confidence 667899999999999964 56666543 455555554321 112367999999998522 23445542211
Q ss_pred HHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchh
Q 003284 80 FLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNE 159 (834)
Q Consensus 80 fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~ 159 (834)
.++.+.. ||| -++.+||..|++++................+++|||+|--|..-.
T Consensus 69 ---~~~~l~~-~Gg---T~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~------------------ 123 (176)
T cd01464 69 ---QPPRLTA-SGG---TSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTDDL------------------ 123 (176)
T ss_pred ---CCCcccC-CCC---CcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCchH------------------
Confidence 2334443 333 577888888888774321100001112345789999987653111
Q ss_pred hhhhccCCCHHHHHHHHhhcCcEEEEeccCC---chhHHHHH
Q 003284 160 AQAESRLSDAETVAKSFVQCSVSLSVICPKQ---LPKLTAIY 198 (834)
Q Consensus 160 ~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrq---lp~l~~Lf 198 (834)
.++.+..+.+.++++.+++|.-=. ...|++|-
T Consensus 124 -------~~~~~~~~~~~~~~~~i~~igiG~~~~~~~L~~ia 158 (176)
T cd01464 124 -------TAAIERIKEARDSKGRIVACAVGPKADLDTLKQIT 158 (176)
T ss_pred -------HHHHHHHHhhcccCCcEEEEEeccccCHHHHHHHH
Confidence 012345566666678888775443 34444443
No 36
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.99 E-value=0.00017 Score=85.64 Aligned_cols=160 Identities=15% Similarity=0.143 Sum_probs=104.6
Q ss_pred CccEEEEEeccccch-HhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHHH
Q 003284 3 EKQLIVAVEGTAAMG-PYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFL 81 (834)
Q Consensus 3 ~~dvVFVID~Tasmg-~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~fl 81 (834)
...||||||+++||. .=|..+|. +++.|-.. .+..+-+++||.|+...- + ...++|++.....
T Consensus 401 ~~~vvfvvD~SGSM~~~rl~~aK~-----a~~~ll~~------ay~~rD~v~lI~F~g~~a--~---~~lppT~~~~~~~ 464 (584)
T PRK13406 401 ETTTIFVVDASGSAALHRLAEAKG-----AVELLLAE------AYVRRDQVALVAFRGRGA--E---LLLPPTRSLVRAK 464 (584)
T ss_pred CccEEEEEECCCCCcHhHHHHHHH-----HHHHHHHh------hcCCCCEEEEEEECCCce--e---EEcCCCcCHHHHH
Confidence 478999999999994 34555553 33333211 112456999999976633 1 2467999999999
Q ss_pred HHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhhh
Q 003284 82 HWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQ 161 (834)
Q Consensus 82 ~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~~ 161 (834)
.+|++|... +.-.+++||..|++++..... ....+++|||+|--+.. +.. .. ..
T Consensus 465 ~~L~~l~~g----GgTpL~~gL~~A~~~l~~~~~-------~~~~~~iVLlTDG~~n~-~~~------------~~--~~ 518 (584)
T PRK13406 465 RSLAGLPGG----GGTPLAAGLDAAAALALQVRR-------KGMTPTVVLLTDGRANI-ARD------------GT--AG 518 (584)
T ss_pred HHHhcCCCC----CCChHHHHHHHHHHHHHHhcc-------CCCceEEEEEeCCCCCC-Ccc------------cc--cc
Confidence 999988722 235788899888887754221 12358999999876531 100 00 00
Q ss_pred hhccCCCHHHHHHHHhhcCcEEEEeccCC--chhHHHHHHHhcCC
Q 003284 162 AESRLSDAETVAKSFVQCSVSLSVICPKQ--LPKLTAIYNAAKRN 204 (834)
Q Consensus 162 ~~~~l~d~e~lA~~~~e~~I~LSvIsPrq--lp~l~~Lfeka~~~ 204 (834)
....+.|+..+|+.+.+.+|.+++|..-. ...+++|-++.++.
T Consensus 519 ~~~~~~~~~~~a~~~~~~gi~~~vId~g~~~~~~~~~LA~~~gg~ 563 (584)
T PRK13406 519 RAQAEEDALAAARALRAAGLPALVIDTSPRPQPQARALAEAMGAR 563 (584)
T ss_pred ccchhhHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHhcCCe
Confidence 01123467888999999999999998753 34577777766554
No 37
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.98 E-value=0.00011 Score=87.26 Aligned_cols=165 Identities=15% Similarity=0.182 Sum_probs=103.1
Q ss_pred ccEEEEEeccccchH-hHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHHHH
Q 003284 4 KQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLH 82 (834)
Q Consensus 4 ~dvVFVID~Tasmg~-yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~fl~ 82 (834)
..|+||||+++||.. -|+.+| -+++.|... .+..+-+++||+|++... + ..++||.+...+..
T Consensus 408 ~~v~fvvD~SGSM~~~rl~~aK-----~av~~Ll~~------~~~~~D~v~Li~F~~~~a--~---~~lp~t~~~~~~~~ 471 (589)
T TIGR02031 408 RLLIFVVDASGSAAVARMSEAK-----GAVELLLGE------AYVHRDQVSLIAFRGTAA--E---VLLPPSRSVEQAKR 471 (589)
T ss_pred ceEEEEEECCCCCChHHHHHHH-----HHHHHHHHh------hccCCCEEEEEEECCCCc--e---EECCCCCCHHHHHH
Confidence 568999999999964 344444 334444321 111345899999987642 1 23678999999999
Q ss_pred HhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhhhh
Q 003284 83 WLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQA 162 (834)
Q Consensus 83 ~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~~~ 162 (834)
+|+.|.. ||| -.+++||..|++.+..... ....+++|||+|--+-- + ... ..+ ++..+.
T Consensus 472 ~L~~l~~-gGg---TpL~~gL~~A~~~~~~~~~-------~~~~~~ivllTDG~~nv-~--~~~----~~~-~~~~~~-- 530 (589)
T TIGR02031 472 RLDVLPG-GGG---TPLAAGLAAAFQTALQARS-------SGGTPTIVLITDGRGNI-P--LDG----DPE-SIKADR-- 530 (589)
T ss_pred HHhcCCC-CCC---CcHHHHHHHHHHHHHHhcc-------cCCceEEEEECCCCCCC-C--CCc----ccc-cccccc--
Confidence 9999975 333 4567778888777653110 13457999999875421 1 000 000 000000
Q ss_pred hccCCCHHHHHHHHhhcCcEEEEeccCC----chhHHHHHHHhcCCC
Q 003284 163 ESRLSDAETVAKSFVQCSVSLSVICPKQ----LPKLTAIYNAAKRNP 205 (834)
Q Consensus 163 ~~~l~d~e~lA~~~~e~~I~LSvIsPrq----lp~l~~Lfeka~~~~ 205 (834)
+-...++..+|+.+.+.+|.++||-... ...+++|-++.+++-
T Consensus 531 ~~~~~~~~~~a~~~~~~gi~~~vid~~~~~~~~~~~~~lA~~~~g~y 577 (589)
T TIGR02031 531 EQAAEEALALARKIREAGMPALVIDTAMRFVSTGFAQKLARKMGAHY 577 (589)
T ss_pred hhHHHHHHHHHHHHHhcCCeEEEEeCCCCCccchHHHHHHHhcCCcE
Confidence 0011245788999999999999997753 345888888777653
No 38
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=97.91 E-value=7e-05 Score=77.50 Aligned_cols=154 Identities=16% Similarity=0.128 Sum_probs=92.9
Q ss_pred cEEEEEeccccchHhHH---HHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCC-----CcccceeeccCCCC
Q 003284 5 QLIVAVEGTAAMGPYWQ---SIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGS-----YCACLVQRSGWTKD 76 (834)
Q Consensus 5 dvVFVID~Tasmg~yi~---~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~-----~~~~lv~~~gfTsd 76 (834)
-||||||.+.+|..--+ .-+=+....++..|-...+. ....-++|||+|++... |....+-+-.-+.|
T Consensus 3 ~ivf~iDvS~SM~~~~~~~~~s~l~~a~~~i~~~~~~ki~----~~~~D~vGlilf~t~~~~~~~~~~~i~v~~~l~~~~ 78 (218)
T cd01458 3 SVVFLVDVSPSMFESKDGEYESPFEEALKCIRQLMKSKII----SSPKDLVGVVFYGTEESKNPVGYENIYVLLDLDTPG 78 (218)
T ss_pred EEEEEEeCCHHHcCCCCCCCCChHHHHHHHHHHHHHhcee----CCCCCeEEEEEEcccCCCCcCCCCceEEeecCCCCC
Confidence 58999999999962110 01111122333333221111 11346999999999863 22222222223778
Q ss_pred HHHHHHHhccCccC------CCC-CchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecC-CCCCCCCCcccCC
Q 003284 77 VDIFLHWLSTIPFA------GGG-FNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAAS-NPHPLPTPVYRPQ 148 (834)
Q Consensus 77 ~~~fl~~Ld~I~f~------GGG-~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~S-pP~~lp~pv~~p~ 148 (834)
...+..+++-+.-. +.| ....++.+||..|+.+|.... .....|++|||+|. .|+. ...
T Consensus 79 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~-------~~~~~k~IvL~TDg~~p~~-~~~----- 145 (218)
T cd01458 79 AERVEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGK-------KKKSHKRIFLFTNNDDPHG-GDS----- 145 (218)
T ss_pred HHHHHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhcc-------ccccccEEEEECCCCCCCC-CCH-----
Confidence 88777777655321 112 236789999999999996411 13457999999986 4443 100
Q ss_pred ccccccccchhhhhhccCCCHHHHHHHHhhcCcEEEEeccCC
Q 003284 149 MQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQ 190 (834)
Q Consensus 149 ~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrq 190 (834)
.+ ..+++.+|+.+.+++|.|.+|...-
T Consensus 146 ---------~~------~~~~~~~a~~l~~~gI~i~~i~i~~ 172 (218)
T cd01458 146 ---------IK------DSQAAVKAEDLKDKGIELELFPLSS 172 (218)
T ss_pred ---------HH------HHHHHHHHHHHHhCCcEEEEEecCC
Confidence 00 1245789999999999999998754
No 39
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.82 E-value=0.00055 Score=66.23 Aligned_cols=132 Identities=14% Similarity=0.180 Sum_probs=80.1
Q ss_pred ccEEEEEeccccchHh-HHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHHHH
Q 003284 4 KQLIVAVEGTAAMGPY-WQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLH 82 (834)
Q Consensus 4 ~dvVFVID~Tasmg~y-i~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~fl~ 82 (834)
+||+||||+++||... +... +.-+.-+++.+.. ...+++||.|.+. + .........+..+++.
T Consensus 1 ~~v~illD~SgSM~~~k~~~a-~~~~~~l~~~~~~----------~~~~v~li~F~~~--~---~~~~~~~~~~~~~~~~ 64 (152)
T cd01462 1 GPVILLVDQSGSMYGAPEEVA-KAVALALLRIALA----------ENRDTYLILFDSE--F---QTKIVDKTDDLEEPVE 64 (152)
T ss_pred CCEEEEEECCCCCCCCHHHHH-HHHHHHHHHHHHH----------cCCcEEEEEeCCC--c---eEEecCCcccHHHHHH
Confidence 6899999999999853 2222 2223333333321 1358999999877 1 1223446788899999
Q ss_pred HhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhhhh
Q 003284 83 WLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQA 162 (834)
Q Consensus 83 ~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~~~ 162 (834)
+|..+.. ||| -.+++||..++.++.... ...+.+|+|+|-..-..+
T Consensus 65 ~l~~~~~-~gg---T~l~~al~~a~~~l~~~~---------~~~~~ivliTDG~~~~~~--------------------- 110 (152)
T cd01462 65 FLSGVQL-GGG---TDINKALRYALELIERRD---------PRKADIVLITDGYEGGVS--------------------- 110 (152)
T ss_pred HHhcCCC-CCC---cCHHHHHHHHHHHHHhcC---------CCCceEEEECCCCCCCCC---------------------
Confidence 9987754 344 356777778877764311 124678888875310000
Q ss_pred hccCCCHHHHHHHHhhcCcEEEEeccC
Q 003284 163 ESRLSDAETVAKSFVQCSVSLSVICPK 189 (834)
Q Consensus 163 ~~~l~d~e~lA~~~~e~~I~LSvIsPr 189 (834)
.++...+++..++++.+++|.--
T Consensus 111 ----~~~~~~~~~~~~~~~~v~~~~~g 133 (152)
T cd01462 111 ----DELLREVELKRSRVARFVALALG 133 (152)
T ss_pred ----HHHHHHHHHHHhcCcEEEEEEec
Confidence 01112366666778999999654
No 40
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=97.74 E-value=0.00061 Score=81.69 Aligned_cols=158 Identities=18% Similarity=0.223 Sum_probs=101.3
Q ss_pred CccEEEEEeccccchH--hHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHH
Q 003284 3 EKQLIVAVEGTAAMGP--YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIF 80 (834)
Q Consensus 3 ~~dvVFVID~Tasmg~--yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~f 80 (834)
...||||||+++||+. -|..+|.- +.-++.... ..+.++|||.|++... + ..+++|++...+
T Consensus 465 ~~~vv~vvD~SgSM~~~~rl~~ak~a-~~~ll~~a~----------~~~D~v~lI~F~g~~a--~---~~~p~t~~~~~~ 528 (633)
T TIGR02442 465 GNLVIFVVDASGSMAARGRMAAAKGA-VLSLLRDAY----------QKRDKVALITFRGEEA--E---VLLPPTSSVELA 528 (633)
T ss_pred CceEEEEEECCccCCCccHHHHHHHH-HHHHHHHhh----------cCCCEEEEEEECCCCc--e---EEcCCCCCHHHH
Confidence 3689999999999974 35555533 223332211 1357999999986522 1 246889999999
Q ss_pred HHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhh
Q 003284 81 LHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEA 160 (834)
Q Consensus 81 l~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~ 160 (834)
..+|+.+...|| -.+++||..|+.++..... ......+.+|||+|--+---. .+
T Consensus 529 ~~~L~~l~~gG~----Tpl~~aL~~A~~~l~~~~~-----~~~~~~~~vvliTDG~~n~~~------------~~----- 582 (633)
T TIGR02442 529 ARRLEELPTGGR----TPLAAGLLKAAEVLSNELL-----RDDDGRPLLVVITDGRANVAD------------GG----- 582 (633)
T ss_pred HHHHHhCCCCCC----CCHHHHHHHHHHHHHHhhc-----cCCCCceEEEEECCCCCCCCC------------CC-----
Confidence 999999985333 4566777777776652100 012345788999876442100 00
Q ss_pred hhhccCCCHHHHHHHHhhcCcEEEEeccC----CchhHHHHHHHhcCC
Q 003284 161 QAESRLSDAETVAKSFVQCSVSLSVICPK----QLPKLTAIYNAAKRN 204 (834)
Q Consensus 161 ~~~~~l~d~e~lA~~~~e~~I~LSvIsPr----qlp~l~~Lfeka~~~ 204 (834)
...+.|+..+|+.+.+.+|.+.+|... ....+++|-+..++.
T Consensus 583 --~~~~~~~~~~a~~l~~~~i~~~vIdt~~~~~~~~~~~~lA~~~gg~ 628 (633)
T TIGR02442 583 --EPPTDDARTIAAKLAARGILFVVIDTESGFVRLGLAEDLARALGGE 628 (633)
T ss_pred --CChHHHHHHHHHHHHhcCCeEEEEeCCCCCcchhHHHHHHHhhCCe
Confidence 001235677899999999999999763 346688888776654
No 41
>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]. The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. Integrins are important therapeutic targets in conditions such as atherosclerosis, thrombosis, cancer and asthma []. At the N terminus of the beta subunit is a cysteine-containing domain reminiscent of that found in presenillins and semaphorins, which has hence been termed the PSI domain. C-terminal to the PSI domain is an A-domain, which has been predicted to adopt a Rossmann fold similar to that of the alpha subunit, but with additional loops between the second and third beta strands []. The murine gene Pactolus shares significant similarity with the beta subunit [], but lacks either one or both of the inserted loops. The C-terminal portion of the beta subunit extracellular domain contains an internally disulphide-bonded cysteine-rich region, while the intracellular tail contains putative sites of interaction with a variety of intracellular signalling and cytoskeletal proteins, such as focal adhesion kinase and alpha-actinin respectively []. Integrin cytoplasmic domains are normally less than 50 amino acids in length, with the beta-subunit sequences exhibiting greater homology to each other than the alpha-subunit sequences. This is consistent with current evidence that the beta subunit is the principal site for binding of cytoskeletal and signalling molecules, whereas the alpha subunit has a regulatory role. The first 20 amino acids of the beta-subunit cytoplasmic domain are also alpha helical, but the final 25 residues are disordered and, apart from a turn that follows a conserved NPxY motif, appear to lack defined structure, suggesting that this is adopted on effector binding. The two membrane-proximal helices mediate the link between the subunits via a series of hydrophobic and electrostatic contacts. This entry represents the N-terminal portion of the extracellular region of integrin beta subunits.; GO: 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion; PDB: 3VI4_B 3VI3_B 2VDQ_B 3IJE_B 1M1X_B 2VDR_B 3NIF_B 3NID_D 1TYE_F 2Q6W_F ....
Probab=97.74 E-value=0.00031 Score=80.53 Aligned_cols=174 Identities=10% Similarity=0.033 Sum_probs=104.6
Q ss_pred ccEEEEEeccccchHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcc-----------------c
Q 003284 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCA-----------------C 66 (834)
Q Consensus 4 ~dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~-----------------~ 66 (834)
.||.|++|-+.+|+++++.||+. =..+.+.+.. + ..++|+|+=.|-|.+-+|- .
T Consensus 103 vDLYyLmDlS~Sm~ddl~~l~~l-g~~l~~~~~~--i------t~~~~~GfGsfvdK~~~P~~~~~p~~l~~pc~~~~~~ 173 (426)
T PF00362_consen 103 VDLYYLMDLSYSMKDDLENLKSL-GQDLAEEMRN--I------TSNFRLGFGSFVDKPVMPFVSTTPEKLKNPCPSKNPN 173 (426)
T ss_dssp EEEEEEEE-SGGGHHHHHHHCCC-CHHHHHHHHT--T-------SSEEEEEEEESSSSSTTTST-SSHCHHSTSCCTTS-
T ss_pred eeEEEEeechhhhhhhHHHHHHH-HHHHHHHHHh--c------CccceEechhhcccccCCcccCChhhhcCcccccCCC
Confidence 59999999999999999999975 4456666643 1 2468999999988763211 0
Q ss_pred ceeecc------CCCCHHHHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCcc-CCcEEEEeecCCCCC
Q 003284 67 LVQRSG------WTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVD-GQRHCILVAASNPHP 139 (834)
Q Consensus 67 lv~~~g------fTsd~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~-~qkhCILIa~SpP~~ 139 (834)
+...|+ .|+|..+|...+.+..++|+-|.||+-.+||--|+.|-+.. -|.. ..|.+|+.+|+++|-
T Consensus 174 c~~~~~f~~~l~Lt~~~~~F~~~v~~~~is~n~D~PEgg~dal~Qa~vC~~~i-------gWr~~a~~llv~~TD~~fH~ 246 (426)
T PF00362_consen 174 CQPPFSFRHVLSLTDDITEFNEEVNKQKISGNLDAPEGGLDALMQAAVCQEEI-------GWRNEARRLLVFSTDAGFHF 246 (426)
T ss_dssp -B---SEEEEEEEES-HHHHHHHHHTS--B--SSSSBSHHHHHHHHHH-HHHH-------T--STSEEEEEEEESS-B--
T ss_pred CCCCeeeEEeecccchHHHHHHhhhhccccCCCCCCccccchheeeeeccccc-------CcccCceEEEEEEcCCcccc
Confidence 112233 49999999999999999999999999999999887665311 1233 556778999999997
Q ss_pred CCC------------CcccCCccccccccchhhhhhccCCCHHHHHHHHhhcCcEEEEeccCC-chhHHHHHH
Q 003284 140 LPT------------PVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQ-LPKLTAIYN 199 (834)
Q Consensus 140 lp~------------pv~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrq-lp~l~~Lfe 199 (834)
... .|++.. ++ .|.++ ..-..-...+|++.+.|++|..=+...+. ...|++|-+
T Consensus 247 agDg~l~gi~~pnd~~Chl~~-~~-~y~~~----~~~DYPSv~ql~~~l~e~~i~~IFAVt~~~~~~Y~~L~~ 313 (426)
T PF00362_consen 247 AGDGKLAGIVKPNDGKCHLDD-NG-MYTAS----TEQDYPSVGQLVRKLSENNINPIFAVTKDVYSIYEELSN 313 (426)
T ss_dssp TTGGGGGT--S---SS--BST-TS-BBGGG----GCS----HHHHHHHHHHTTEEEEEEEEGGGHHHHHHHHH
T ss_pred ccccccceeeecCCCceEECC-CC-ccccc----ccccCCCHHHHHHHHHHcCCEEEEEEchhhhhHHHHHhh
Confidence 654 343321 00 11111 11122356899999999999865444444 444444433
No 42
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=97.58 E-value=0.00087 Score=72.50 Aligned_cols=136 Identities=13% Similarity=0.108 Sum_probs=91.1
Q ss_pred CccEEEEEeccccchHh------HHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCC
Q 003284 3 EKQLIVAVEGTAAMGPY------WQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKD 76 (834)
Q Consensus 3 ~~dvVFVID~Tasmg~y------i~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd 76 (834)
+.+|||+||-+.||... +++ + ..|..+++.+. .-++|||.|.... ...++||.|
T Consensus 60 ~~qIvlaID~S~SM~~~~~~~~alea-k-~lIs~al~~Le------------~g~vgVv~Fg~~~------~~v~Plt~d 119 (266)
T cd01460 60 DYQILIAIDDSKSMSENNSKKLALES-L-CLVSKALTLLE------------VGQLGVCSFGEDV------QILHPFDEQ 119 (266)
T ss_pred CceEEEEEecchhcccccccccHHHH-H-HHHHHHHHhCc------------CCcEEEEEeCCCc------eEeCCCCCC
Confidence 47999999999999774 221 1 12333444442 2599999999862 245788888
Q ss_pred HHH--HHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCC--CCCCCCCcccCCcccc
Q 003284 77 VDI--FLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASN--PHPLPTPVYRPQMQNL 152 (834)
Q Consensus 77 ~~~--fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~Sp--P~~lp~pv~~p~~~~~ 152 (834)
... ++..++...|..+| -.|..+|.+|+.+|++...+. ......+-+|||+|-- .|.
T Consensus 120 ~~~~a~~~~l~~~~f~~~~---Tni~~aL~~a~~~f~~~~~~~---~s~~~~qlilLISDG~~~~~e------------- 180 (266)
T cd01460 120 FSSQSGPRILNQFTFQQDK---TDIANLLKFTAQIFEDARTQS---SSGSLWQLLLIISDGRGEFSE------------- 180 (266)
T ss_pred chhhHHHHHhCcccCCCCC---CcHHHHHHHHHHHHHhhhccc---cccccccEEEEEECCCcccCc-------------
Confidence 875 55556555555444 569999999999997531100 1111358889998765 221
Q ss_pred ccccchhhhhhccCCCHHHHHHHHhhcCcEEEEeccCCc
Q 003284 153 DQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQL 191 (834)
Q Consensus 153 ~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrql 191 (834)
.....+++.+.+++|.+++|.-+..
T Consensus 181 --------------~~~~~~~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 181 --------------GAQKVRLREAREQNVFVVFIIIDNP 205 (266)
T ss_pred --------------cHHHHHHHHHHHcCCeEEEEEEcCC
Confidence 1234568999999999999999874
No 43
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=97.57 E-value=0.0014 Score=80.54 Aligned_cols=107 Identities=14% Similarity=0.266 Sum_probs=64.2
Q ss_pred CccEEEEEeccccchH--hHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCC-----C
Q 003284 3 EKQLIVAVEGTAAMGP--YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWT-----K 75 (834)
Q Consensus 3 ~~dvVFVID~Tasmg~--yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfT-----s 75 (834)
.++||||||.+++|.. -|+.+|. .++.|-...+ ....++|||.|.+... ...+++ .
T Consensus 304 ~r~VVLVLDvSGSM~g~dRL~~lkq-----AA~~fL~~~l------~~~DrVGLVtFsssA~------vl~pLt~Its~~ 366 (863)
T TIGR00868 304 QRIVCLVLDKSGSMTVEDRLKRMNQ-----AAKLFLLQTV------EKGSWVGMVTFDSAAY------IKNELIQITSSA 366 (863)
T ss_pred CceEEEEEECCccccccCHHHHHHH-----HHHHHHHHhC------CCCCEEEEEEECCcee------EeeccccCCcHH
Confidence 4789999999999974 3544442 2332211111 1246999999999743 112332 2
Q ss_pred CHHHHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCC
Q 003284 76 DVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPH 138 (834)
Q Consensus 76 d~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~ 138 (834)
|...+...|. +. .+|| -+|.+||.+|++++..... ....+++||++|--+.
T Consensus 367 dr~aL~~~L~-~~-A~GG---T~I~~GL~~Alq~L~~~~~-------~~~~~~IILLTDGedn 417 (863)
T TIGR00868 367 ERDALTANLP-TA-ASGG---TSICSGLKAAFQVIKKSYQ-------STDGSEIVLLTDGEDN 417 (863)
T ss_pred HHHHHHHhhc-cc-cCCC---CcHHHHHHHHHHHHHhccc-------ccCCCEEEEEeCCCCC
Confidence 3444444443 22 3333 6889999999998864221 1234799999986543
No 44
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=97.46 E-value=0.0012 Score=78.53 Aligned_cols=107 Identities=13% Similarity=0.191 Sum_probs=69.6
Q ss_pred ccEEEEEeccccchH-hHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCC-CCHHHHH
Q 003284 4 KQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWT-KDVDIFL 81 (834)
Q Consensus 4 ~dvVFVID~Tasmg~-yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfT-sd~~~fl 81 (834)
++||||||+++||.. .|+.+|.- +.-+|+.+.. ..+|+||.|.+... ...-.....+ .+.....
T Consensus 272 ~~vvfvlD~SgSM~g~~i~~ak~a-l~~~l~~L~~-----------~d~~~ii~F~~~~~--~~~~~~~~~~~~~~~~a~ 337 (596)
T TIGR03788 272 RELVFVIDTSGSMAGESIEQAKSA-LLLALDQLRP-----------GDRFNIIQFDSDVT--LLFPVPVPATAHNLARAR 337 (596)
T ss_pred ceEEEEEECCCCCCCccHHHHHHH-HHHHHHhCCC-----------CCEEEEEEECCcce--EeccccccCCHHHHHHHH
Confidence 789999999999964 46666643 4455555532 35999999987743 1111112222 3567788
Q ss_pred HHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCC
Q 003284 82 HWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASN 136 (834)
Q Consensus 82 ~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~Sp 136 (834)
.||+.|...|| -.++.||..|+..+... .....|++|||+|--
T Consensus 338 ~~i~~l~a~Gg----T~l~~aL~~a~~~~~~~--------~~~~~~~iillTDG~ 380 (596)
T TIGR03788 338 QFVAGLQADGG----TEMAGALSAALRDDGPE--------SSGALRQVVFLTDGA 380 (596)
T ss_pred HHHhhCCCCCC----ccHHHHHHHHHHhhccc--------CCCceeEEEEEeCCC
Confidence 89999986543 34777888888764211 123468999999874
No 45
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=97.31 E-value=0.0029 Score=64.62 Aligned_cols=110 Identities=12% Similarity=0.190 Sum_probs=65.3
Q ss_pred CccEEEEEeccccchHh--------HHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCC
Q 003284 3 EKQLIVAVEGTAAMGPY--------WQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWT 74 (834)
Q Consensus 3 ~~dvVFVID~Tasmg~y--------i~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfT 74 (834)
.+|+|||||.|+||+.. |+.++.- +.-++..+.. + ....++|++|.+... ..++.+
T Consensus 2 ~~dvv~~ID~SgSM~~~~~~~~~~k~~~ak~~-~~~l~~~~~~-------~--D~d~i~l~~f~~~~~------~~~~~~ 65 (199)
T cd01457 2 NRDYTLLIDKSGSMAEADEAKERSRWEEAQES-TRALARKCEE-------Y--DSDGITVYLFSGDFR------RYDNVN 65 (199)
T ss_pred CcCEEEEEECCCcCCCCCCCCCchHHHHHHHH-HHHHHHHHHh-------c--CCCCeEEEEecCCcc------ccCCcC
Confidence 48999999999999853 5666533 4444444321 1 224577888866532 112333
Q ss_pred CCHHHHHHHhccCccCCCCCchhhHHHHHHHHHhh-cccCCCCCCCCCCccCCcEEEEeecCCCC
Q 003284 75 KDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMM-FSVAPNGSQNQQNVDGQRHCILVAASNPH 138 (834)
Q Consensus 75 sd~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~-f~~~~~~~~~~~~~~~qkhCILIa~SpP~ 138 (834)
...+..++.++...|| -.+..+|..|+.. +..... . ......+++|+|++--|+
T Consensus 66 --~~~v~~~~~~~~p~G~----T~l~~~l~~a~~~~~~~~~~-~---~~~p~~~~vIiiTDG~~~ 120 (199)
T cd01457 66 --SSKVDQLFAENSPDGG----TNLAAVLQDALNNYFQRKEN-G---ATCPEGETFLVITDGAPD 120 (199)
T ss_pred --HHHHHHHHhcCCCCCc----CcHHHHHHHHHHHHHHHHhh-c---cCCCCceEEEEEcCCCCC
Confidence 7888888988875544 3455566666533 221110 0 011125899999998876
No 46
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=97.24 E-value=0.0089 Score=61.90 Aligned_cols=144 Identities=12% Similarity=0.137 Sum_probs=78.4
Q ss_pred EEEEEeccccch-------HhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCc--------ccceee
Q 003284 6 LIVAVEGTAAMG-------PYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYC--------ACLVQR 70 (834)
Q Consensus 6 vVFVID~Tasmg-------~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~--------~~lv~~ 70 (834)
+|||||++.+|. .+|+.+++-.-.-+.+.+.. ++..++|||+|++...-. ..++-.
T Consensus 2 ~vflID~s~sM~~~~~~~~~~l~~al~~i~~~~~~ki~~---------~~kD~vgvvl~gt~~t~n~~~~~~~~~i~~l~ 72 (224)
T PF03731_consen 2 TVFLIDVSPSMFEPSSESESPLEEALKAIEDLMQQKIIS---------SPKDEVGVVLFGTDETNNPDEDSGYENIFVLQ 72 (224)
T ss_dssp EEEEEE-SCGGGS-BTTCS-HHHHHHHHHHHHHHHHHHT---------T---EEEEEEES-SS-BST-TTT-STTEEEEE
T ss_pred EEEEEECCHHHCCCCCCcchhHHHHHHHHHHHHHHHHcC---------CCCCeEEEEEEcCCCCCCcccccCCCceEEee
Confidence 799999999999 34555553322222222222 233699999999887632 112222
Q ss_pred ccCCCCHHHHHHHhccCcc------CCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecC-CCCCCCCC
Q 003284 71 SGWTKDVDIFLHWLSTIPF------AGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAAS-NPHPLPTP 143 (834)
Q Consensus 71 ~gfTsd~~~fl~~Ld~I~f------~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~S-pP~~lp~p 143 (834)
.-=..+++.+....+-+.- ..++.....+.++|..|+.+|...- .......|+++||+|. .||.-.
T Consensus 73 ~l~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~-----~~~k~~~krI~l~Td~d~p~~~~-- 145 (224)
T PF03731_consen 73 PLDPPSAERLKELEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERT-----CKKKKNKKRIFLFTDNDGPHEDD-- 145 (224)
T ss_dssp ECC--BHHHHHHHHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHC-----TTS-ECEEEEEEEES-SSTTT-C--
T ss_pred cCCccCHHHHHHHHHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHh-----hcccCCCcEEEEEeCCCCCCCCH--
Confidence 1113355555554444432 2445567789999999999986310 1234567899999965 666411
Q ss_pred cccCCccccccccchhhhhhccCCCHHHH-----HHHHhhcCcEEEEecc
Q 003284 144 VYRPQMQNLDQNENNEAQAESRLSDAETV-----AKSFVQCSVSLSVICP 188 (834)
Q Consensus 144 v~~p~~~~~~~~e~~~~~~~~~l~d~e~l-----A~~~~e~~I~LSvIsP 188 (834)
.+.+.+ ++.+.+.+|.|.++-.
T Consensus 146 -----------------------~~~~~~~~~l~~~Dl~~~~i~~~~~~l 172 (224)
T PF03731_consen 146 -----------------------DELERIIQKLKAKDLQDNGIEIELFFL 172 (224)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHHHTEEEEEEEC
T ss_pred -----------------------HHHHHHHHhhccccchhcCcceeEeec
Confidence 122333 6669999999888865
No 47
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=97.07 E-value=0.013 Score=60.74 Aligned_cols=153 Identities=10% Similarity=-0.009 Sum_probs=93.8
Q ss_pred ccEEEEEeccccchHhHHH------HHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCccccee-eccCCCC
Q 003284 4 KQLIVAVEGTAAMGPYWQS------IVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQ-RSGWTKD 76 (834)
Q Consensus 4 ~dvVFVID~Tasmg~yi~~------lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~-~~gfTsd 76 (834)
|.|+||||-++||-. |+. =|-+-+...++.|.+. .+ +. ..-++|+ ++++.+ -+++. -+++|.|
T Consensus 1 ~~l~lavDlSgSM~~-~~~~dg~~~~RL~a~k~v~~~f~~f-~~--~r--~~DriG~--~g~~~~--~~~lt~d~p~t~d 70 (191)
T cd01455 1 KRLKLVVDVSGSMYR-FNGYDGRLDRSLEAVVMVMEAFDGF-ED--KI--QYDIIGH--SGDGPC--VPFVKTNHPPKNN 70 (191)
T ss_pred CceEEEEECcHhHHH-HhccCCccccHHHHHHHHHHHHHHH-HH--hC--ccceeee--cCcccc--cCccccccCcccc
Confidence 579999999999986 341 1222333445556421 01 11 1246663 444432 33433 4777777
Q ss_pred H---HHHHHHhccCccCCCCCchhhHHHHHHHHHhhcc-cCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCcccc
Q 003284 77 V---DIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFS-VAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNL 152 (834)
Q Consensus 77 ~---~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~-~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~ 152 (834)
. +.+...|+...+ |..+..-+|||..|+..|. .. ....|.+||++|.+=..-
T Consensus 71 ~~~~~~l~~~l~~~q~---g~ag~~TadAi~~av~rl~~~~---------~a~~kvvILLTDG~n~~~------------ 126 (191)
T cd01455 71 KERLETLKMMHAHSQF---CWSGDHTVEATEFAIKELAAKE---------DFDEAIVIVLSDANLERY------------ 126 (191)
T ss_pred hhHHHHHHHHHHhccc---CccCccHHHHHHHHHHHHHhcC---------cCCCcEEEEEeCCCcCCC------------
Confidence 7 577778887765 2222222299999999985 42 223689999997653211
Q ss_pred ccccchhhhhhccCCCHHHH-HHHHhhcCcEEEEeccCC--chhHHHHHHHhcC
Q 003284 153 DQNENNEAQAESRLSDAETV-AKSFVQCSVSLSVICPKQ--LPKLTAIYNAAKR 203 (834)
Q Consensus 153 ~~~e~~~~~~~~~l~d~e~l-A~~~~e~~I~LSvIsPrq--lp~l~~Lfeka~~ 203 (834)
+ -+++++ |++.++.||+++.|.-=. -..|+.+-+..++
T Consensus 127 ------------~-i~P~~aAa~lA~~~gV~iytIgiG~~d~~~l~~iA~~tgG 167 (191)
T cd01455 127 ------------G-IQPKKLADALAREPNVNAFVIFIGSLSDEADQLQRELPAG 167 (191)
T ss_pred ------------C-CChHHHHHHHHHhCCCEEEEEEecCCCHHHHHHHHhCCCC
Confidence 1 266775 688889999999998654 4666666665443
No 48
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=96.88 E-value=0.022 Score=59.19 Aligned_cols=160 Identities=16% Similarity=0.210 Sum_probs=107.3
Q ss_pred EEeccccchH--hHHH---HHHHHHHHHH-HHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHHHH
Q 003284 9 AVEGTAAMGP--YWQS---IVSDYLEKII-RCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLH 82 (834)
Q Consensus 9 VID~Tasmg~--yi~~---lkt~YI~p~l-e~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~fl~ 82 (834)
|||.+.+|.. |-+. +...|++..+ |||...++ ..+|+|+-|+.- .-+...++.++.+..+
T Consensus 1 viD~S~~m~~~D~~PtRl~~~~~~l~~Fv~eff~qNPi---------Sqlgii~~~~~~-----a~~ls~lsgn~~~h~~ 66 (193)
T PF04056_consen 1 VIDMSEAMREKDLKPTRLQCVLKALEEFVREFFDQNPI---------SQLGIIVMRDGR-----AERLSELSGNPQEHIE 66 (193)
T ss_pred CeechHhHHhCcCCccHHHHHHHHHHHHHHHHHhcCCh---------hheeeeeeecce-----eEEeeecCCCHHHHHH
Confidence 6788887752 2221 1122233332 33444333 699999999873 2345678899999999
Q ss_pred HhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhhhh
Q 003284 83 WLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQA 162 (834)
Q Consensus 83 ~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~~~ 162 (834)
.|+++... +..++..+-.||..|...+...+ ....|-+++|..|-=
T Consensus 67 ~L~~~~~~-~~~G~~SLqN~Le~A~~~L~~~p--------~~~srEIlvi~gSl~------------------------- 112 (193)
T PF04056_consen 67 ALKKLRKL-EPSGEPSLQNGLEMARSSLKHMP--------SHGSREILVIFGSLT------------------------- 112 (193)
T ss_pred HHHHhccC-CCCCChhHHHHHHHHHHHHhhCc--------cccceEEEEEEeecc-------------------------
Confidence 99888633 23345678899999998886433 234677777753321
Q ss_pred hccCCCHHHHHHHHhhcCcEEEEeccC-CchhHHHHHHHhcCCCCCCCCCCCCCCCCCeEEEeeccchhh
Q 003284 163 ESRLSDAETVAKSFVQCSVSLSVICPK-QLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEA 231 (834)
Q Consensus 163 ~~~l~d~e~lA~~~~e~~I~LSvIsPr-qlp~l~~Lfeka~~~~~~~~~~~~~ak~p~hlVLLsg~~l~~ 231 (834)
.+...|...+++.+.+.+|.+|||+.- .+-.+|+|.++.++. |.|.|.+.-+++
T Consensus 113 t~Dp~di~~ti~~l~~~~IrvsvI~laaEv~I~k~i~~~T~G~---------------y~V~lde~H~~~ 167 (193)
T PF04056_consen 113 TCDPGDIHETIESLKKENIRVSVISLAAEVYICKKICKETGGT---------------YGVILDEDHFKE 167 (193)
T ss_pred cCCchhHHHHHHHHHHcCCEEEEEEEhHHHHHHHHHHHhhCCE---------------EEEecCHHHHHH
Confidence 112246788999999999999999876 478999999988863 667777655554
No 49
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=96.67 E-value=0.017 Score=60.94 Aligned_cols=177 Identities=14% Similarity=0.172 Sum_probs=85.9
Q ss_pred EEEEEeccc--cchHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCC----C-----------------
Q 003284 6 LIVAVEGTA--AMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHG----S----------------- 62 (834)
Q Consensus 6 vVFVID~Ta--smg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~----~----------------- 62 (834)
.|||||.|- .-..+++.+++. |..+|+.+. ...+.++|||+|.+.= -
T Consensus 6 y~FvID~s~~av~~g~~~~~~~s-l~~~l~~l~---------~~~~~~vgiitfd~~V~~y~l~~~~~~~~~~v~~dl~~ 75 (243)
T PF04811_consen 6 YVFVIDVSYEAVQSGLLQSLIES-LKSALDSLP---------GDERTRVGIITFDSSVHFYNLSSSLSQPQMIVVSDLDD 75 (243)
T ss_dssp EEEEEE-SHHHHHHTHHHHHHHH-HHHHGCTSS---------TSTT-EEEEEEESSSEEEEETTTTSSSTEEEEEHHTTS
T ss_pred EEEEEECchhhhhccHHHHHHHH-HHHHHHhcc---------CCCCcEEEEEEeCCEEEEEECCCCcCCCcccchHHHhh
Confidence 699999984 234455555533 333443332 1257999999997521 0
Q ss_pred -----CcccceeeccCCCCHHHHHHHhccCccCCC-C-CchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecC
Q 003284 63 -----YCACLVQRSGWTKDVDIFLHWLSTIPFAGG-G-FNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAAS 135 (834)
Q Consensus 63 -----~~~~lv~~~gfTsd~~~fl~~Ld~I~f~GG-G-~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~S 135 (834)
..++++.....-..+..+++.|.. .|... + ..+.|...||.+|+.++.... .--++++.+.+
T Consensus 76 ~~~p~~~~llv~~~e~~~~i~~ll~~L~~-~~~~~~~~~~~~c~G~Al~~A~~ll~~~~----------~gGkI~~F~s~ 144 (243)
T PF04811_consen 76 PFIPLPDGLLVPLSECRDAIEELLESLPS-IFPETAGKRPERCLGSALSAALSLLSSRN----------TGGKILVFTSG 144 (243)
T ss_dssp HHSSTSSSSSEETTTCHHHHHHHHHHHHH-HSTT-TTB-----HHHHHHHHHHHHHHHT----------S-EEEEEEESS
T ss_pred cccCCcccEEEEhHHhHHHHHHHHHHhhh-hcccccccCccccHHHHHHHHHHHHhccc----------cCCEEEEEecc
Confidence 111122211111224444455554 22222 2 346889999999999986211 23466777777
Q ss_pred CCCCCC-CCcccCCcc-ccccccc--hhhhhhccCCCHHHHHHHHhhcCcEEEEeccCC----chhHHHHHHHhcCCC
Q 003284 136 NPHPLP-TPVYRPQMQ-NLDQNEN--NEAQAESRLSDAETVAKSFVQCSVSLSVICPKQ----LPKLTAIYNAAKRNP 205 (834)
Q Consensus 136 pP~~lp-~pv~~p~~~-~~~~~e~--~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrq----lp~l~~Lfeka~~~~ 205 (834)
+|.-=| . +....-. +.+..+. ..+.+... .-.+.||+.|.+.+|.+.+.+--. +..|..|....+|+.
T Consensus 145 ~pt~G~Gg-~l~~~~~~~~~~~~~~~~~~~~~~~-~fY~~la~~~~~~~isvDlf~~~~~~~~l~tl~~l~~~TGG~l 220 (243)
T PF04811_consen 145 PPTYGPGG-SLKKREDSSHYDTEKEKALLLPPAN-EFYKKLAEECSKQGISVDLFVFSSDYVDLATLGPLARYTGGSL 220 (243)
T ss_dssp ---SSSTT-SS-SBTTSCCCCHCTTHHCHSHSSS-HHHHHHHHHHHHCTEEEEEEEECSS--SHHHHTHHHHCTT-EE
T ss_pred CCCCCCCc-eecccccccccccccchhhhccccc-hHHHHHHHHHHhcCCEEEEEeecCCCCCcHhHHHHHHhCceeE
Confidence 874333 1 1000000 1111011 11111111 125899999999999777654332 688888888777764
No 50
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=96.66 E-value=0.00053 Score=85.19 Aligned_cols=23 Identities=9% Similarity=0.166 Sum_probs=11.1
Q ss_pred hhcCcEEEEeccCCchhHHHHHHHhc
Q 003284 177 VQCSVSLSVICPKQLPKLTAIYNAAK 202 (834)
Q Consensus 177 ~e~~I~LSvIsPrqlp~l~~Lfeka~ 202 (834)
.+.|..+| .+.|. +--+|||-.|
T Consensus 1709 kK~Glqvs--tkqk~-spwdlFEg~k 1731 (2220)
T KOG3598|consen 1709 KKNGLQVS--TKQKK-SPWDLFEGTK 1731 (2220)
T ss_pred hhcCceec--ccccc-CcchhhccCC
Confidence 55555443 33332 2346777544
No 51
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=96.14 E-value=0.0013 Score=82.01 Aligned_cols=11 Identities=27% Similarity=0.229 Sum_probs=5.5
Q ss_pred CCCCCCCCccc
Q 003284 523 TMIPTPGMSQQ 533 (834)
Q Consensus 523 ~m~p~~gm~q~ 533 (834)
+|+++.+|...
T Consensus 1995 a~g~~~~m~p~ 2005 (2220)
T KOG3598|consen 1995 AMGNTSSMPPS 2005 (2220)
T ss_pred ccCCCCCcCCC
Confidence 45555555543
No 52
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=96.04 E-value=0.035 Score=57.38 Aligned_cols=160 Identities=21% Similarity=0.188 Sum_probs=96.6
Q ss_pred CCCccEEEEEeccccc-hHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHH
Q 003284 1 MSEKQLIVAVEGTAAM-GPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDI 79 (834)
Q Consensus 1 ~~~~dvVFVID~Tasm-g~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~ 79 (834)
|.+.-++|++|++++| |.-|+.|. +-|..+++.+...+.+. .+.++++|+|..+-- ...+|| |+..
T Consensus 1 mrRlP~~lllDtSgSM~Ge~IealN-~Glq~m~~~Lkqdp~Al-----e~v~lsIVTF~~~a~------~~~pf~-~~~n 67 (207)
T COG4245 1 MRRLPCYLLLDTSGSMIGEPIEALN-AGLQMMIDTLKQDPYAL-----ERVELSIVTFGGPAR------VIQPFT-DAAN 67 (207)
T ss_pred CCCCCEEEEEecCcccccccHHHHH-HHHHHHHHHHHhChhhh-----heeEEEEEEecCcce------EEechh-hHhh
Confidence 5667799999999999 55666665 66899999998866543 468999999986421 222333 3332
Q ss_pred HHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchh
Q 003284 80 FLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNE 159 (834)
Q Consensus 80 fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~ 159 (834)
|. =-+-+.+||- .+..||..|+.|.++.....-.+.-.+..-.++||+|..|- -.|.
T Consensus 68 F~---~p~L~a~GgT---~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~Pt----D~w~------------- 124 (207)
T COG4245 68 FN---PPILTAQGGT---PLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPT----DDWQ------------- 124 (207)
T ss_pred cC---CCceecCCCC---chHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcc----hHHH-------------
Confidence 21 1223344553 23445666777777643333333445566778999999882 2211
Q ss_pred hhhhccCCCHHHHHHHHhhcCcEEEEeccC--CchhHHHHHHHhc
Q 003284 160 AQAESRLSDAETVAKSFVQCSVSLSVICPK--QLPKLTAIYNAAK 202 (834)
Q Consensus 160 ~~~~~~l~d~e~lA~~~~e~~I~LSvIsPr--qlp~l~~Lfeka~ 202 (834)
+...-+ ++ +.-..++|..+.+-+. +++.|+.|+|+-.
T Consensus 125 ~~~~~~----~~--~~~~~k~v~a~~~G~~~ad~~~L~qit~~V~ 163 (207)
T COG4245 125 AGAALV----FQ--GERRAKSVAAFSVGVQGADNKTLNQITEKVR 163 (207)
T ss_pred hHHHHh----hh--cccccceEEEEEecccccccHHHHHHHHhhc
Confidence 000000 11 1113355666666666 6899999998754
No 53
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=95.39 E-value=0.13 Score=61.57 Aligned_cols=152 Identities=19% Similarity=0.138 Sum_probs=86.7
Q ss_pred cEEEEEeccccchHhHHH-----HHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCC-----CcccceeeccCC
Q 003284 5 QLIVAVEGTAAMGPYWQS-----IVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGS-----YCACLVQRSGWT 74 (834)
Q Consensus 5 dvVFVID~Tasmg~yi~~-----lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~-----~~~~lv~~~gfT 74 (834)
-|||+||++.+|..-... =... +..|+..+....+- ..+..++|||+|++-.+ |..++|-+.==.
T Consensus 12 ailflIDvs~sM~~~~~~~~~~s~~~~-al~~i~~l~q~kIi----s~~~D~vGivlfgT~~t~n~~~~~~i~v~~~L~~ 86 (584)
T TIGR00578 12 SLIFLVDASKAMFEESQGEDELTPFDM-SIQCIQSVYTSKII----SSDKDLLAVVFYGTEKDKNSVNFKNIYVLQELDN 86 (584)
T ss_pred EEEEEEECCHHHcCCCcCcCcCChHHH-HHHHHHHHHHhcCC----CCCCCeEEEEEEeccCCCCccCCCceEEEeeCCC
Confidence 389999999999841111 0111 22344444333221 22457999999999764 444444332223
Q ss_pred CCHHHHHHHhccCccCCC---------CCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecC-CCCCCCCCc
Q 003284 75 KDVDIFLHWLSTIPFAGG---------GFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAAS-NPHPLPTPV 144 (834)
Q Consensus 75 sd~~~fl~~Ld~I~f~GG---------G~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~S-pP~~lp~pv 144 (834)
.|++.+ +.|+.|.-..| ......++++|-.|+.+|.... .....|+++||+|. .||.-...
T Consensus 87 p~a~~i-~~L~~l~~~~~~~~~~~~~~~~~~~~l~daL~~~~~~f~~~~-------~k~~~kRI~lfTd~D~P~~~~~~- 157 (584)
T TIGR00578 87 PGAKRI-LELDQFKGDQGPKKFRDTYGHGSDYSLSEVLWVCANLFSDVQ-------FRMSHKRIMLFTNEDNPHGNDSA- 157 (584)
T ss_pred CCHHHH-HHHHHHhhccCccchhhccCCCCCCcHHHHHHHHHHHHHhcc-------hhhcCcEEEEECCCCCCCCCchh-
Confidence 344443 33333321101 1123478999999999996321 13357888888876 67642210
Q ss_pred ccCCccccccccchhhhhhccCCCHHHHHHHHhhcCcEEEEeccCC
Q 003284 145 YRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQ 190 (834)
Q Consensus 145 ~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrq 190 (834)
.. .-+.+.|+.|.+.||.|-++..+.
T Consensus 158 -----------------~~---~~a~~~a~dl~~~gi~ielf~l~~ 183 (584)
T TIGR00578 158 -----------------KA---SRARTKAGDLRDTGIFLDLMHLKK 183 (584)
T ss_pred -----------------HH---HHHHHHHHHHHhcCeEEEEEecCC
Confidence 00 013568999999999999985543
No 54
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=94.82 E-value=0.66 Score=49.11 Aligned_cols=177 Identities=10% Similarity=0.138 Sum_probs=94.8
Q ss_pred cEEEEEecccc--chHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCC---c------cccee----
Q 003284 5 QLIVAVEGTAA--MGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSY---C------ACLVQ---- 69 (834)
Q Consensus 5 dvVFVID~Tas--mg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~---~------~~lv~---- 69 (834)
-.|||||.+.. -..+++.+++- |.-+|+.+-. ..+.++|||+|.++=.+ . ..++-
T Consensus 5 ~~vFvID~s~~ai~~~~l~~~~~s-l~~~l~~lp~---------~~~~~igiITf~~~V~~~~~~~~~~~~~~~v~~dl~ 74 (239)
T cd01468 5 VFVFVIDVSYEAIKEGLLQALKES-LLASLDLLPG---------DPRARVGLITYDSTVHFYNLSSDLAQPKMYVVSDLK 74 (239)
T ss_pred EEEEEEEcchHhccccHHHHHHHH-HHHHHHhCCC---------CCCcEEEEEEeCCeEEEEECCCCCCCCeEEEeCCCc
Confidence 36999999874 14456777754 5566665521 14689999999653111 1 01110
Q ss_pred ------eccCCCCH----HHHHHHhccCccCCC----CCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecC
Q 003284 70 ------RSGWTKDV----DIFLHWLSTIPFAGG----GFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAAS 135 (834)
Q Consensus 70 ------~~gfTsd~----~~fl~~Ld~I~f~GG----G~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~S 135 (834)
..+|.-++ +.+...|+.|.-... .-...|...||.+|+.++.... .--++++.+.+
T Consensus 75 d~f~p~~~~~l~~~~e~~~~i~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~----------~gGkI~~f~sg 144 (239)
T cd01468 75 DVFLPLPDRFLVPLSECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAFLLLKGTF----------AGGRIIVFQGG 144 (239)
T ss_pred cCcCCCcCceeeeHHHHHHHHHHHHHhhhhhccccCCCCCcccHHHHHHHHHHHHhhcC----------CCceEEEEECC
Confidence 01122222 344556666643332 2346888899999999886321 12345555556
Q ss_pred CCC-CCCCCccc---CCccccccccchhhhhhccCCCHHHHHHHHhhcCcEEEEeccC----CchhHHHHHHHhcCCC
Q 003284 136 NPH-PLPTPVYR---PQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPK----QLPKLTAIYNAAKRNP 205 (834)
Q Consensus 136 pP~-~lp~pv~~---p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPr----qlp~l~~Lfeka~~~~ 205 (834)
+|- +...-..+ ..+.+ +.| .+..+... .-.+.||..|.+++|.+.+.+-- .+..+..|.+..++..
T Consensus 145 ~pt~GpG~l~~~~~~~~~~~--~~e-~~~~~~a~-~fY~~la~~~~~~~isvdlF~~~~~~~dl~~l~~l~~~TGG~v 218 (239)
T cd01468 145 LPTVGPGKLKSREDKEPIRS--HDE-AQLLKPAT-KFYKSLAKECVKSGICVDLFAFSLDYVDVATLKQLAKSTGGQV 218 (239)
T ss_pred CCCCCCCccccCcccccCCC--ccc-hhcccccH-HHHHHHHHHHHHcCeEEEEEeccccccCHHHhhhhhhcCCceE
Confidence 663 22211000 00000 000 01111111 12378999999999999887532 3577888877777664
No 55
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24
Probab=94.79 E-value=0.48 Score=50.59 Aligned_cols=176 Identities=13% Similarity=0.182 Sum_probs=94.1
Q ss_pred EEEEEeccccch--HhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCC---cc-------cce----e
Q 003284 6 LIVAVEGTAAMG--PYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSY---CA-------CLV----Q 69 (834)
Q Consensus 6 vVFVID~Tasmg--~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~---~~-------~lv----~ 69 (834)
.|||||.|..=- .+++.+++- |.-+|+.+-. + -.+.++|||+|.+.=-+ .. .++ .
T Consensus 6 ~~FvIDvs~~a~~~g~~~~~~~s-i~~~L~~lp~------~--~~~~~VgiITfd~~v~~y~l~~~~~~~q~~vv~dl~d 76 (244)
T cd01479 6 YVFLIDVSYNAIKSGLLATACEA-LLSNLDNLPG------D--DPRTRVGFITFDSTLHFFNLKSSLEQPQMMVVSDLDD 76 (244)
T ss_pred EEEEEEccHHHHhhChHHHHHHH-HHHHHHhcCC------C--CCCeEEEEEEECCeEEEEECCCCCCCCeEEEeeCccc
Confidence 699999876221 145555544 4455555422 1 14689999999874211 00 011 0
Q ss_pred e-----ccCCCCHH----HHHHHhccCc--cCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCC
Q 003284 70 R-----SGWTKDVD----IFLHWLSTIP--FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPH 138 (834)
Q Consensus 70 ~-----~gfTsd~~----~fl~~Ld~I~--f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~ 138 (834)
. .+|.-++. .+...|+.|. |.-+.....|...||.+|+.++... --++|+.+.++|-
T Consensus 77 ~f~P~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~c~G~Al~~A~~lL~~~------------GGkIi~f~s~~pt 144 (244)
T cd01479 77 PFLPLPDGLLVNLKESRQVIEDLLDQIPEMFQDTKETESALGPALQAAFLLLKET------------GGKIIVFQSSLPT 144 (244)
T ss_pred ccCCCCcceeecHHHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHhc------------CCEEEEEeCCCCC
Confidence 1 11222233 3334555553 2233345788999999999988621 1355666666654
Q ss_pred CCC-CCcccC--CccccccccchhhhhhccCCCHHHHHHHHhhcCcEEEEec--cC--CchhHHHHHHHhcCCC
Q 003284 139 PLP-TPVYRP--QMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVIC--PK--QLPKLTAIYNAAKRNP 205 (834)
Q Consensus 139 ~lp-~pv~~p--~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIs--Pr--qlp~l~~Lfeka~~~~ 205 (834)
-=| .-+-+. .+-+-+ .|. ...+... .-.+.+|..|.+++|.+.+.+ .. .+..+..|-+..+|..
T Consensus 145 ~GpG~l~~~~~~~~~~~~-~e~-~~~~p~~-~fY~~la~~~~~~~isvDlF~~~~~~~dla~l~~l~~~TGG~v 215 (244)
T cd01479 145 LGAGKLKSREDPKLLSTD-KEK-QLLQPQT-DFYKKLALECVKSQISVDLFLFSNQYVDVATLGCLSRLTGGQV 215 (244)
T ss_pred cCCcccccCccccccCch-hhh-hhcCcch-HHHHHHHHHHHHcCeEEEEEEccCcccChhhhhhhhhhcCceE
Confidence 222 111000 000000 111 1111111 124789999999999998875 22 3578888888888775
No 56
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=94.30 E-value=0.85 Score=48.06 Aligned_cols=161 Identities=18% Similarity=0.221 Sum_probs=99.2
Q ss_pred CccEEEEEeccccchHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCC-----CCH
Q 003284 3 EKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWT-----KDV 77 (834)
Q Consensus 3 ~~dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfT-----sd~ 77 (834)
+.+||+.||.++|+-..=-.|.. +=+..-|.+..+.+.=..+..-+++|-+|-=.++ ..-....+|| .|.
T Consensus 3 dlaLvLavDvS~SVD~~E~~lQ~---~G~A~Al~dp~V~~Ai~~g~~g~Iav~~~eWsg~--~~q~~~v~Wt~i~~~~da 77 (205)
T PF06707_consen 3 DLALVLAVDVSGSVDADEYRLQR---EGYAAALRDPEVIAAILSGPIGRIAVAVVEWSGP--GRQRVVVPWTRIDSPADA 77 (205)
T ss_pred cceeeeeeeccCCCCHHHHHHHH---HHHHHHHCCHHHHHHHhcCCCCeEEEEEEEecCC--CCceEEeCCEEeCCHHHH
Confidence 35799999999999875333332 2344444443222111112223444444443332 2333457784 578
Q ss_pred HHHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccc
Q 003284 78 DIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNEN 157 (834)
Q Consensus 78 ~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~ 157 (834)
..|-..|...+...+++ -+|.+||..|+.+|+..+ ..+.|++|.|.--=|.
T Consensus 78 ~a~A~~l~~~~r~~~~~--Taig~Al~~a~~ll~~~~--------~~~~RrVIDvSGDG~~------------------- 128 (205)
T PF06707_consen 78 EAFAARLRAAPRRFGGR--TAIGSALDFAAALLAQNP--------FECWRRVIDVSGDGPN------------------- 128 (205)
T ss_pred HHHHHHHHhCCCCCCCC--chHHHHHHHHHHHHHhCC--------CCCceEEEEECCCCCC-------------------
Confidence 88888999988777776 899999999999998533 3478899988622111
Q ss_pred hhhhhhccCCCHHHHHHHHhhcCcEEEEeccCCc-h----hHHHHHHHhc
Q 003284 158 NEAQAESRLSDAETVAKSFVQCSVSLSVICPKQL-P----KLTAIYNAAK 202 (834)
Q Consensus 158 ~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrql-p----~l~~Lfeka~ 202 (834)
.++....+.+-+.+..+||.+.-+.--.- + .|.+-|+...
T Consensus 129 -----N~G~~p~~~ard~~~~~GitINgL~I~~~~~~~~~~L~~yy~~~V 173 (205)
T PF06707_consen 129 -----NQGPRPVTSARDAAVAAGITINGLAILDDDPFGGADLDAYYRRCV 173 (205)
T ss_pred -----CCCCCccHHHHHHHHHCCeEEeeeEecCCCCCccccHHHHHhhhc
Confidence 12222223556677888999987654432 3 5888888654
No 57
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=93.82 E-value=0.017 Score=63.90 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=0.0
Q ss_pred CCCCcCccCCCCCCCCc
Q 003284 789 LSQPQQMVGSGMGQGYV 805 (834)
Q Consensus 789 qQqQqQ~~~~~~~q~~~ 805 (834)
+..+...+|.|||-++-
T Consensus 427 q~hQn~~MGYgmPngyp 443 (468)
T PF11498_consen 427 QHHQNGGMGYGMPNGYP 443 (468)
T ss_dssp -----------------
T ss_pred chhhccCcccCCCCCCC
Confidence 33455667777765553
No 58
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=93.54 E-value=0.48 Score=49.79 Aligned_cols=129 Identities=14% Similarity=0.191 Sum_probs=70.1
Q ss_pred cEEEEEeccccchHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHHHHHh
Q 003284 5 QLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWL 84 (834)
Q Consensus 5 dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~fl~~L 84 (834)
.||||+|.++||..|...+ ..++..+.. .+ -++-+++|.+.-. .++..+ -..|+.+.+.-+
T Consensus 59 ~lvvl~DvSGSM~~~s~~~-----l~~~~~l~~------~~----~~~~~f~F~~~l~---~vT~~l-~~~~~~~~l~~~ 119 (222)
T PF05762_consen 59 RLVVLCDVSGSMAGYSEFM-----LAFLYALQR------QF----RRVRVFVFSTRLT---EVTPLL-RRRDPEEALARL 119 (222)
T ss_pred cEEEEEeCCCChHHHHHHH-----HHHHHHHHH------hC----CCEEEEEEeeehh---hhhhhh-ccCCHHHHHHHH
Confidence 7999999999999995433 334444432 11 2677788876521 111111 113555555544
Q ss_pred c-cCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhhhhh
Q 003284 85 S-TIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAE 163 (834)
Q Consensus 85 d-~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~~~~ 163 (834)
. .+...||| -.|.++|.+++..+... .. ....+|+|+|. +...
T Consensus 120 ~~~~~~~~Gg---Tdi~~aL~~~~~~~~~~--------~~-~~t~vvIiSDg--~~~~---------------------- 163 (222)
T PF05762_consen 120 SALVQSFGGG---TDIGQALREFLRQYARP--------DL-RRTTVVIISDG--WDTN---------------------- 163 (222)
T ss_pred HhhccCCCCc---cHHHHHHHHHHHHhhcc--------cc-cCcEEEEEecc--cccC----------------------
Confidence 3 22223333 33556666666655310 01 13455666663 1000
Q ss_pred ccCCCHHHHHHHHhhcCcEEEEeccC
Q 003284 164 SRLSDAETVAKSFVQCSVSLSVICPK 189 (834)
Q Consensus 164 ~~l~d~e~lA~~~~e~~I~LSvIsPr 189 (834)
...+.+...+.+.+++-.|..+.|-
T Consensus 164 -~~~~~~~~l~~l~~r~~rviwLnP~ 188 (222)
T PF05762_consen 164 -DPEPLAEELRRLRRRGRRVIWLNPL 188 (222)
T ss_pred -ChHHHHHHHHHHHHhCCEEEEECCc
Confidence 0113456667788999999999996
No 59
>PRK10997 yieM hypothetical protein; Provisional
Probab=92.89 E-value=1.3 Score=52.09 Aligned_cols=141 Identities=15% Similarity=0.243 Sum_probs=76.4
Q ss_pred ccEEEEEeccccchHhHHHHHHHHHHH---HHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHH
Q 003284 4 KQLIVAVEGTAAMGPYWQSIVSDYLEK---IIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIF 80 (834)
Q Consensus 4 ~dvVFVID~Tasmg~yi~~lkt~YI~p---~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~f 80 (834)
-.||+|||+++||..+ +.+|-.- .+-+.-- ..+-+++|+.|.+.-. .+ ...-......+
T Consensus 324 GpiII~VDtSGSM~G~----ke~~AkalAaAL~~iAl---------~q~dr~~li~Fs~~i~--~~---~l~~~~gl~~l 385 (487)
T PRK10997 324 GPFIVCVDTSGSMGGF----NEQCAKAFCLALMRIAL---------AENRRCYIMLFSTEVV--TY---ELTGPDGLEQA 385 (487)
T ss_pred CcEEEEEECCCCCCCC----HHHHHHHHHHHHHHHHH---------hcCCCEEEEEecCCce--ee---ccCCccCHHHH
Confidence 5799999999999844 2222222 2222211 1234778999988532 11 12233457788
Q ss_pred HHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhh
Q 003284 81 LHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEA 160 (834)
Q Consensus 81 l~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~ 160 (834)
+..|+.. | ||| -.+..+|.+++....... +. .--+|+|+|=--...|
T Consensus 386 l~fL~~~-f-~GG---TDl~~aL~~al~~l~~~~-------~r--~adIVVISDF~~~~~~------------------- 432 (487)
T PRK10997 386 IRFLSQS-F-RGG---TDLAPCLRAIIEKMQGRE-------WF--DADAVVISDFIAQRLP------------------- 432 (487)
T ss_pred HHHHHHh-c-CCC---CcHHHHHHHHHHHHcccc-------cC--CceEEEECCCCCCCCh-------------------
Confidence 8888754 4 444 224555566665553210 11 1124555532111111
Q ss_pred hhhccCCCHHHHHHHHhh-cCcEEEEeccCC--chhHHHHHHHh
Q 003284 161 QAESRLSDAETVAKSFVQ-CSVSLSVICPKQ--LPKLTAIYNAA 201 (834)
Q Consensus 161 ~~~~~l~d~e~lA~~~~e-~~I~LSvIsPrq--lp~l~~Lfeka 201 (834)
.+.+.-.+.+.+ ++..|..|+--. .|.|.++|++.
T Consensus 433 ------eel~~~L~~Lk~~~~~rf~~l~i~~~~~p~l~~ifD~~ 470 (487)
T PRK10997 433 ------DELVAKVKELQRQHQHRFHAVAMSAHGKPGIMRIFDHI 470 (487)
T ss_pred ------HHHHHHHHHHHHhcCcEEEEEEeCCCCCchHHHhcCee
Confidence 012333345555 888888888764 69999999854
No 60
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=91.89 E-value=4 Score=45.63 Aligned_cols=150 Identities=17% Similarity=0.232 Sum_probs=94.3
Q ss_pred ccEEEEEeccccchH-----hHHHHHHHHHHHH-HHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCH
Q 003284 4 KQLIVAVEGTAAMGP-----YWQSIVSDYLEKI-IRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDV 77 (834)
Q Consensus 4 ~dvVFVID~Tasmg~-----yi~~lkt~YI~p~-le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~ 77 (834)
+-+++|||++-+|.. -.-.+...|++-. .|+|...++ ..+|||..+|--- +-+ ...|.++
T Consensus 61 Rhl~iviD~S~am~e~Df~P~r~a~~~K~le~Fv~eFFdQNPi---------SQigii~~k~g~A--~~l---t~ltgnp 126 (378)
T KOG2807|consen 61 RHLYIVIDCSRAMEEKDFRPSRFANVIKYLEGFVPEFFDQNPI---------SQIGIISIKDGKA--DRL---TDLTGNP 126 (378)
T ss_pred eeEEEEEEhhhhhhhccCCchHHHHHHHHHHHHHHHHhccCch---------hheeEEEEecchh--hHH---HHhcCCH
Confidence 468999999988852 2223333344433 334444444 5899999998722 223 4568899
Q ss_pred HHHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccc
Q 003284 78 DIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNEN 157 (834)
Q Consensus 78 ~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~ 157 (834)
.+-...|.++.+-+|-|+ +.-||.-|...+...+ ..+.|-+++|-.|=
T Consensus 127 ~~hI~aL~~~~~~~g~fS---LqNaLe~a~~~Lk~~p--------~H~sREVLii~ssl--------------------- 174 (378)
T KOG2807|consen 127 RIHIHALKGLTECSGDFS---LQNALELAREVLKHMP--------GHVSREVLIIFSSL--------------------- 174 (378)
T ss_pred HHHHHHHhcccccCCChH---HHHHHHHHHHHhcCCC--------cccceEEEEEEeee---------------------
Confidence 999999999996666676 3344555555443222 22345554443221
Q ss_pred hhhhhhccCCCHHHHHHHHhhcCcEEEEeccCC-chhHHHHHHHhcC
Q 003284 158 NEAQAESRLSDAETVAKSFVQCSVSLSVICPKQ-LPKLTAIYNAAKR 203 (834)
Q Consensus 158 ~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrq-lp~l~~Lfeka~~ 203 (834)
..+..+|...+.+.+..-+|.+|||..-- .-..|+|..+.++
T Consensus 175 ----sT~DPgdi~~tI~~lk~~kIRvsvIgLsaEv~icK~l~kaT~G 217 (378)
T KOG2807|consen 175 ----STCDPGDIYETIDKLKAYKIRVSVIGLSAEVFICKELCKATGG 217 (378)
T ss_pred ----cccCcccHHHHHHHHHhhCeEEEEEeechhHHHHHHHHHhhCC
Confidence 11223577788888999999999998874 5667777776653
No 61
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=91.49 E-value=3.5 Score=43.01 Aligned_cols=165 Identities=16% Similarity=0.228 Sum_probs=102.1
Q ss_pred cEEEEEecccc--chHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHHHH
Q 003284 5 QLIVAVEGTAA--MGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLH 82 (834)
Q Consensus 5 dvVFVID~Tas--mg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~fl~ 82 (834)
-+|++||-+-. .|+|+++=..--+ ..+|.+....+++ ..-..+||+...++-+ .. -+.||++..+|+.
T Consensus 5 atvvliDNse~s~NgDy~ptRFeAQk-d~ve~if~~K~nd----npEntiGli~~~~a~p--~v---lsT~T~~~gkilt 74 (243)
T COG5148 5 ATVVLIDNSEASQNGDYLPTRFEAQK-DAVESIFSKKFND----NPENTIGLIPLVQAQP--NV---LSTPTKQRGKILT 74 (243)
T ss_pred eEEEEEeChhhhhcCCCCcHHHHHHH-HHHHHHHHHHhcC----CccceeeeeecccCCc--ch---hccchhhhhHHHH
Confidence 36788887755 4677665333222 2334333322221 1236899999988855 22 3779999999999
Q ss_pred HhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhhhh
Q 003284 83 WLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQA 162 (834)
Q Consensus 83 ~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~~~ 162 (834)
.|..|+..||-+ +..+|.-|+-.|....++ ...+|.+.+|| ||=. |+.|
T Consensus 75 ~lhd~~~~g~a~----~~~~lqiaql~lkhR~nk------~q~qriVaFvg-Spi~-----------------esed--- 123 (243)
T COG5148 75 FLHDIRLHGGAD----IMRCLQIAQLILKHRDNK------GQRQRIVAFVG-SPIQ-----------------ESED--- 123 (243)
T ss_pred HhccccccCcch----HHHHHHHHHHHHhcccCC------ccceEEEEEec-Cccc-----------------ccHH---
Confidence 999999998854 667778888777543322 11234444443 2211 1111
Q ss_pred hccCCCHHHHHHHHhhcCcEEEEeccCCchhHHHHHHHhcCCCCCCCCCCCCCCCCCeEEEe
Q 003284 163 ESRLSDAETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLI 224 (834)
Q Consensus 163 ~~~l~d~e~lA~~~~e~~I~LSvIsPrqlp~l~~Lfeka~~~~~~~~~~~~~ak~p~hlVLL 224 (834)
..-.+|+-+.++||-+.+|----+.-...|||+-+. .|| .|..||+.+
T Consensus 124 -----eLirlak~lkknnVAidii~fGE~~n~~~l~efIda--------~N~-~dsshl~~~ 171 (243)
T COG5148 124 -----ELIRLAKQLKKNNVAIDIIFFGEAANMAGLFEFIDA--------TNF-SDSSHLEVK 171 (243)
T ss_pred -----HHHHHHHHHHhcCeeEEEEehhhhhhhhHHHHHHHh--------hcc-ccceeeEec
Confidence 235789999999999999977766666666665431 222 456788766
No 62
>PF11235 Med25_SD1: Mediator complex subunit 25 synapsin 1; InterPro: IPR021397 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA, domain, this SD1 - synapsin 1 - domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This The function of the SD domains is unclear [].
Probab=91.23 E-value=0.27 Score=49.07 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=54.9
Q ss_pred CCCCCCCCCCcccCCCCC-CCcCCCCCCCCCCCCCC-CC----------CccccCCccccceeecccccccCCCCCCCCC
Q 003284 240 VANLAPNQNPVKMDIAPV-TSVTGPAPTSIPSVNGI-NR----------PPISVGNVPTATVKVEPSTVTSMVNGPTFPH 307 (834)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~-~~----------~~~~~~~~~~~~~k~~~~~~~~m~~~p~f~~ 307 (834)
.+.+.+++.+.....+.+ ++...++++.+|.|..+ +. +.++..+||+|+.. +...|+||+.
T Consensus 9 pg~lq~KQ~Vp~pP~p~~~~~l~aaP~q~LPpVs~pq~qvp~n~tLsaAq~AAq~AVEAAknQ-------Kaglg~RF~p 81 (168)
T PF11235_consen 9 PGPLQPKQPVPLPPAPVSPAQLSAAPQQPLPPVSPPQYQVPGNSTLSAAQVAAQNAVEAAKNQ-------KAGLGPRFSP 81 (168)
T ss_pred CCCCCCCCcccCCCCCCCccccccCCcCCCCCCCccccccCccccchHHHHHHHHHHHHHHhc-------cccCCCCCCC
Confidence 467888888777776655 77789999999999666 33 23567888866554 3457899999
Q ss_pred CCCCCCCCCCCCCCcc
Q 003284 308 IPSVPRPASQGVPSLQ 323 (834)
Q Consensus 308 ~~p~~~~~~~~~~~~q 323 (834)
++|+++..--|-|--|
T Consensus 82 i~p~~~a~~vgpPFsQ 97 (168)
T PF11235_consen 82 INPLQQAPGVGPPFSQ 97 (168)
T ss_pred CCcccCCCCCCCCCcC
Confidence 9998886444444333
No 63
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.61 E-value=4.3 Score=44.71 Aligned_cols=168 Identities=15% Similarity=0.146 Sum_probs=94.4
Q ss_pred EEEEEeccccchHhHHH-----HHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCC---Cccccee---ecc--
Q 003284 6 LIVAVEGTAAMGPYWQS-----IVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGS---YCACLVQ---RSG-- 72 (834)
Q Consensus 6 vVFVID~Tasmg~yi~~-----lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~---~~~~lv~---~~g-- 72 (834)
||+|||+..--|.-+.. -.++.|.-++-++|. .+. .....++++|..+.+.+ |+.+... ..+
T Consensus 5 L~vvlD~np~~W~~~~~~~~~~~l~~~l~sllvF~Na-hL~----l~~~N~vaVIAs~~~~~~~LYps~~~~~~~~~~~~ 79 (279)
T TIGR00627 5 LVVIIEANPCSWGMLALAHGKRTISKVLRAIVVFLNA-HLA----FNANNKLAVIASHSQDNKYLYPSTRCEDRNASELD 79 (279)
T ss_pred EEEEEeCCHHHHHHHhhccCCCcHHHHHHHHHHHHHH-HHh----cCccCCEEEEEecCCcceEEecCCccccccccccc
Confidence 78999977644322211 234556666666654 221 12458999999988776 5544211 000
Q ss_pred ----------CCCCHH-HHH----HHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCC
Q 003284 73 ----------WTKDVD-IFL----HWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNP 137 (834)
Q Consensus 73 ----------fTsd~~-~fl----~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP 137 (834)
-++.++ .++ ..++...-..-......++.||.-||...-+.. ...+.....+.++++|..|+-
T Consensus 80 ~~~~~~~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~lagals~ALcyinr~~--~~~~~~~~~~~RIlii~~s~~ 157 (279)
T TIGR00627 80 PKRLRELLYRDFRTVDETIVEEIKPLMAHADKHMKKDSRTVLAGALSDALGYINRSE--QSETASEKLKSRILVISITPD 157 (279)
T ss_pred cccccchhccchhHHHHHHHHHHHHHHhhchhcccccccccchhHHHhhhhhhcccc--cccccCcCCcceEEEEECCCC
Confidence 001111 112 222222211111245678899999997765421 011223456777777777754
Q ss_pred CCCCCCcccCCccccccccchhhhhhccCCCHHHHHHHHhhcCcEEEEeccC---CchhHHHHHHHhcCC
Q 003284 138 HPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPK---QLPKLTAIYNAAKRN 204 (834)
Q Consensus 138 ~~lp~pv~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPr---qlp~l~~Lfeka~~~ 204 (834)
+... |.|. ...+.++.+.+|.++||... ....|+.+-+..+|-
T Consensus 158 ~~~q---Yi~~---------------------mn~Ifaaqk~~I~Idv~~L~~e~~~~~lqQa~~~TgG~ 203 (279)
T TIGR00627 158 MALQ---YIPL---------------------MNCIFSAQKQNIPIDVVSIGGDFTSGFLQQAADITGGS 203 (279)
T ss_pred chHH---HHHH---------------------HHHHHHHHHcCceEEEEEeCCccccHHHHHHHHHhCCE
Confidence 4322 4433 45677889999999999765 388999999988764
No 64
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24
Probab=88.80 E-value=6.9 Score=42.69 Aligned_cols=114 Identities=13% Similarity=0.114 Sum_probs=60.5
Q ss_pred HHhccCcc-----CCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCC-CCcccCC---ccc-
Q 003284 82 HWLSTIPF-----AGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLP-TPVYRPQ---MQN- 151 (834)
Q Consensus 82 ~~Ld~I~f-----~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp-~pv~~p~---~~~- 151 (834)
..|+.|+- .-+.....|...||..|+.+++... ...--++++...++|--=| .-+.+.. +-.
T Consensus 121 ~lLe~L~~~~~~~~~~~r~~r~~G~Al~~A~~ll~~~~--------~~~gGki~~F~sg~pT~GpG~l~~r~~~~~~r~~ 192 (267)
T cd01478 121 DLLEQLQPDPWPVPAGHRPLRCTGVALSIAVGLLEACF--------PNTGARIMLFAGGPCTVGPGAVVSTELKDPIRSH 192 (267)
T ss_pred HHHHhCcccccccCCCCCCCCchHHHHHHHHHHHHhhc--------CCCCcEEEEEECCCCCCCCceeeccccccccccc
Confidence 46666643 2233346788889999988886210 1123456666666664322 1111100 000
Q ss_pred cc-cccchhhhhhccCCCHHHHHHHHhhcCcEEEEeccC----CchhHHHHHHHhcCC
Q 003284 152 LD-QNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPK----QLPKLTAIYNAAKRN 204 (834)
Q Consensus 152 ~~-~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPr----qlp~l~~Lfeka~~~ 204 (834)
.+ .+++.++.+... .-...+|..+.+++|.+.+.+-- .+..++.|.++.++.
T Consensus 193 ~d~~~~~~~~~~~a~-~fY~~la~~~~~~~vsvDlF~~s~d~vglaem~~l~~~TGG~ 249 (267)
T cd01478 193 HDIDKDNAKYYKKAV-KFYDSLAKRLAANGHAVDIFAGCLDQVGLLEMKVLVNSTGGH 249 (267)
T ss_pred cccccchhhhhhhHH-HHHHHHHHHHHhCCeEEEEEeccccccCHHHHHHHHHhcCcE
Confidence 00 011111111111 12367999999999998876633 357888888877765
No 65
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=88.53 E-value=2.4 Score=51.89 Aligned_cols=177 Identities=12% Similarity=0.065 Sum_probs=105.5
Q ss_pred ccEEEEEeccccchHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCC--------------Cccc--c
Q 003284 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGS--------------YCAC--L 67 (834)
Q Consensus 4 ~dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~--------------~~~~--l 67 (834)
-||.+.+|=+.+|+++++.|++. =..+.+.++.= .+++|+|.=.|-|.+- .+++ +
T Consensus 133 VDLYyLMDlS~SM~DDl~~l~~L-G~~L~~~m~~l--------T~nfrlGFGSFVDK~v~P~i~~~pekl~npc~~~~~C 203 (783)
T KOG1226|consen 133 VDLYYLMDLSYSMKDDLENLKSL-GTDLAREMRKL--------TSNFRLGFGSFVDKTVSPYISTTPEKLRNPCPNYKNC 203 (783)
T ss_pred eeEEEEeecchhhhhhHHHHHHH-HHHHHHHHHHH--------hccCCccccchhccccccccccCcHHhcCCCCCcccC
Confidence 59999999999999999999965 34444444321 1345666655555442 1221 1
Q ss_pred eeeccC------CCCHHHHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCC-ccCCcEEEEeecCCCCCC
Q 003284 68 VQRSGW------TKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQN-VDGQRHCILVAASNPHPL 140 (834)
Q Consensus 68 v~~~gf------Tsd~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~-~~~qkhCILIa~SpP~~l 140 (834)
.-.|+| |.|++.|...+.+-..+|-=|.||-=.+|+--|..+=+.. -| +++.|..|+.+++-.|-.
T Consensus 204 ~ppfgfkhvLsLT~~~~~F~~~V~~q~ISgNlDaPEGGfDAimQaavC~~~I-------GWR~~a~~lLVF~td~~~H~a 276 (783)
T KOG1226|consen 204 APPFGFKHVLSLTNDAEEFNEEVGKQRISGNLDAPEGGFDAIMQAAVCTEKI-------GWRNDATRLLVFSTDAGFHFA 276 (783)
T ss_pred CCCcccceeeecCCChHHHHHHHhhceeccCCCCCCchHHHHHhhhhccccc-------cccccceeEEEEEcCcceeee
Confidence 122444 9999999999999999998888776555554444333211 13 336778899999999976
Q ss_pred CCCcccCCccc----cccccchhhh---hhccCCCHHHHHHHHhhcCcEEEE-eccCCchhHHHH
Q 003284 141 PTPVYRPQMQN----LDQNENNEAQ---AESRLSDAETVAKSFVQCSVSLSV-ICPKQLPKLTAI 197 (834)
Q Consensus 141 p~pv~~p~~~~----~~~~e~~~~~---~~~~l~d~e~lA~~~~e~~I~LSv-IsPrqlp~l~~L 197 (834)
...-+..-+.- =..+++..|+ ... .....+|++.+.+++|++.. |.-.+...+++|
T Consensus 277 ~DgkLaGiv~pnDG~CHL~~~g~Yt~S~~qd-yPSia~l~~kl~~~ni~~IFAVt~~~~~~Y~~l 340 (783)
T KOG1226|consen 277 GDGKLAGIVQPNDGQCHLDKNGEYTQSTTQD-YPSIAQLAQKLADNNINTIFAVTKNSQSLYEEL 340 (783)
T ss_pred cccceeeEecCCCCccccCCCCccceecCCC-CCcHHHHHHHHhhhcchhHHHHhhhhhhHHHhh
Confidence 65211111100 0011221221 112 23558889999999987644 444444444443
No 66
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.08 E-value=6 Score=49.19 Aligned_cols=160 Identities=16% Similarity=0.251 Sum_probs=90.2
Q ss_pred ccEEEEEecc--ccchHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCC------------------
Q 003284 4 KQLIVAVEGT--AAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSY------------------ 63 (834)
Q Consensus 4 ~dvVFVID~T--asmg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~------------------ 63 (834)
.-.||.||.| |.+..-+..+.++ |..+|++|-. .+++.|+|+|+|.+.=-|
T Consensus 418 pafvFmIDVSy~Ai~~G~~~a~ce~-ik~~l~~lp~--------~~p~~~Vgivtfd~tvhFfnl~s~L~qp~mliVsdv 488 (1007)
T KOG1984|consen 418 PAFVFMIDVSYNAISNGAVKAACEA-IKSVLEDLPR--------EEPNIRVGIVTFDKTVHFFNLSSNLAQPQMLIVSDV 488 (1007)
T ss_pred ceEEEEEEeehhhhhcchHHHHHHH-HHHHHhhcCc--------cCCceEEEEEEecceeEeeccCccccCceEEEeecc
Confidence 4579999987 4455556666655 6777888843 136799999999764210
Q ss_pred ccccee-eccC----CCCHHHHHHHhccCc--cCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCC
Q 003284 64 CACLVQ-RSGW----TKDVDIFLHWLSTIP--FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASN 136 (834)
Q Consensus 64 ~~~lv~-~~gf----Tsd~~~fl~~Ld~I~--f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~Sp 136 (834)
.+++|= ..|+ -.+.......||.|. |.+-+.-+.++..+|.+|+..+... +.-|.+|....-|
T Consensus 489 ~dvfvPf~~g~~V~~~es~~~i~~lLd~Ip~mf~~sk~pes~~g~alqaa~lalk~~----------~gGKl~vF~s~Lp 558 (1007)
T KOG1984|consen 489 DDVFVPFLDGLFVNPNESRKVIELLLDSIPTMFQDSKIPESVFGSALQAAKLALKAA----------DGGKLFVFHSVLP 558 (1007)
T ss_pred cccccccccCeeccchHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHhcc----------CCceEEEEecccc
Confidence 111111 1222 233444555888884 5666666788888888888777531 1345555554444
Q ss_pred CCCCCCCcccCCccccccccchhhhhhc--c---CCCHHHHHHHHhhcCcEEEEec
Q 003284 137 PHPLPTPVYRPQMQNLDQNENNEAQAES--R---LSDAETVAKSFVQCSVSLSVIC 187 (834)
Q Consensus 137 P~~lp~pv~~p~~~~~~~~e~~~~~~~~--~---l~d~e~lA~~~~e~~I~LSvIs 187 (834)
=+..+- +|.+-++++-+.-.++- | -.+...||++|.|-+|+|.+-.
T Consensus 559 t~g~g~-----kl~~r~D~~l~~t~kek~l~~pq~~~y~~LA~e~v~~g~svDlF~ 609 (1007)
T KOG1984|consen 559 TAGAGG-----KLSNRDDRRLIGTDKEKNLLQPQDKTYTTLAKEFVESGCSVDLFL 609 (1007)
T ss_pred cccCcc-----cccccchhhhhcccchhhccCcchhHHHHHHHHHHHhCceEEEEE
Confidence 444441 11111111111000110 0 0124689999999999988764
No 67
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=87.88 E-value=13 Score=39.78 Aligned_cols=180 Identities=17% Similarity=0.251 Sum_probs=108.5
Q ss_pred EEEEEeccccc--hHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHHHHH
Q 003284 6 LIVAVEGTAAM--GPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHW 83 (834)
Q Consensus 6 vVFVID~Tasm--g~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~fl~~ 83 (834)
.++|||-+-.| |+|+++=..- =...++.+|...+... .-.-+||+..-.+.+ .. -..+|+|.-+++..
T Consensus 6 tmi~iDNse~mrNgDy~PtRf~a-Q~daVn~v~~~K~~sn----pEntvGiitla~a~~--~v---LsT~T~d~gkils~ 75 (259)
T KOG2884|consen 6 TMICIDNSEYMRNGDYLPTRFQA-QKDAVNLVCQAKLRSN----PENTVGIITLANASV--QV---LSTLTSDRGKILSK 75 (259)
T ss_pred EEEEEeChHHhhcCCCChHHHHH-HHHHHHHHHHhhhcCC----cccceeeEeccCCCc--ee---eeeccccchHHHHH
Confidence 57888887665 6777654322 1234555555433211 236899999888755 22 36799999999999
Q ss_pred hccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhhhhh
Q 003284 84 LSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAE 163 (834)
Q Consensus 84 Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~~~~ 163 (834)
|.+|+..|+ +.+..||.-|.-.|.... .-+..+|.+++|+ ||= ++.|
T Consensus 76 lh~i~~~g~----~~~~~~i~iA~lalkhRq------nk~~~~riVvFvG-Spi---------------~e~e------- 122 (259)
T KOG2884|consen 76 LHGIQPHGK----ANFMTGIQIAQLALKHRQ------NKNQKQRIVVFVG-SPI---------------EESE------- 122 (259)
T ss_pred hcCCCcCCc----ccHHHHHHHHHHHHHhhc------CCCcceEEEEEec-Ccc---------------hhhH-------
Confidence 999998775 456677777777775322 1122233334443 221 1111
Q ss_pred ccCCCHHHHHHHHhhcCcEEEEeccCCchhH-HHHHHHhcCCCCCCCCCCCCCCCCCeEEEeeccchhhhhhcCCCC
Q 003284 164 SRLSDAETVAKSFVQCSVSLSVICPKQLPKL-TAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAALSRPG 239 (834)
Q Consensus 164 ~~l~d~e~lA~~~~e~~I~LSvIsPrqlp~l-~~Lfeka~~~~~~~~~~~~~ak~p~hlVLLsg~~l~~r~~~~r~~ 239 (834)
.+...+|+-|.+.+|.+.||-=--...- .+||+.-. ..|+.-+-.|||-+.-..+=.-..++-|-
T Consensus 123 ---keLv~~akrlkk~~Vaidii~FGE~~~~~e~l~~fid--------a~N~~~~gshlv~Vppg~~L~d~l~ssPi 188 (259)
T KOG2884|consen 123 ---KELVKLAKRLKKNKVAIDIINFGEAENNTEKLFEFID--------ALNGKGDGSHLVSVPPGPLLSDALLSSPI 188 (259)
T ss_pred ---HHHHHHHHHHHhcCeeEEEEEeccccccHHHHHHHHH--------HhcCCCCCceEEEeCCCccHHHHhhcCce
Confidence 1457899999999999999976543222 23333211 12233566899988766654555554444
No 68
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p34 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0000439 core TFIIH complex
Probab=86.80 E-value=8.6 Score=42.30 Aligned_cols=169 Identities=15% Similarity=0.145 Sum_probs=92.1
Q ss_pred EEEEEeccccchHhHH--HHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCC---Ccccce---eecc-----
Q 003284 6 LIVAVEGTAAMGPYWQ--SIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGS---YCACLV---QRSG----- 72 (834)
Q Consensus 6 vVFVID~Tasmg~yi~--~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~---~~~~lv---~~~g----- 72 (834)
||+|||+...-+.-.. .-.++.|+-++-++|. .+. .....++++|.++.+.+ ||...- ...+
T Consensus 4 LvIILD~nP~~W~~~~~~~~l~~~l~~llvFlNa-hL~----l~~~N~vaVIAs~~~~s~~LYP~~~~~~~~~~~~~~~~ 78 (276)
T PF03850_consen 4 LVIILDTNPLAWGQLSDQLSLSQFLDSLLVFLNA-HLA----LNHSNQVAVIASHSNSSKFLYPSPSSSESSNSGDVEMN 78 (276)
T ss_pred EEEEEECCHHHHhhccccccHHHHHHHHHHHHHH-HHh----hCccCCEEEEEEcCCccEEEeCCCccccccCCCccccc
Confidence 7999998765443333 2234555555555554 221 12458999999988876 455441 0000
Q ss_pred --------CCCCHHHHH-HHhccC--ccCCCCCc--hhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEE-eecCCCC
Q 003284 73 --------WTKDVDIFL-HWLSTI--PFAGGGFN--DAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCIL-VAASNPH 138 (834)
Q Consensus 73 --------fTsd~~~fl-~~Ld~I--~f~GGG~~--~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCIL-Ia~SpP~ 138 (834)
-++.+++++ +-|.++ +....... ...++-||+.||+..-+...... ......+.++++ |..|+-+
T Consensus 79 ~~~~~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~LagALS~ALCyINR~~~~~~-~~~~~~~~RILv~~s~s~d~ 157 (276)
T PF03850_consen 79 SSDSNKYRQFRNVDETVLEELKKLMSETSESSDSTTSSLLAGALSMALCYINRISRESP-SGGTSLKSRILVIVSGSPDS 157 (276)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHhhhhhccc-CCCCCcCccEEEEEecCCCc
Confidence 011111111 222211 12222222 37899999999988765421111 001233444444 7777776
Q ss_pred CCCCCcccCCccccccccchhhhhhccCCCHHHHHHHHhhcCcEEEEeccCC--chhHHHHHHHhcCC
Q 003284 139 PLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQ--LPKLTAIYNAAKRN 204 (834)
Q Consensus 139 ~lp~pv~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrq--lp~l~~Lfeka~~~ 204 (834)
... |.|.|| .+=+..+.+|.+.++.... .+.|.-.-+..+|-
T Consensus 158 ~~Q---Yi~~MN---------------------~iFaAqk~~v~IDv~~L~~~~s~fLqQa~d~T~G~ 201 (276)
T PF03850_consen 158 SSQ---YIPLMN---------------------CIFAAQKQKVPIDVCKLGGKDSTFLQQASDITGGI 201 (276)
T ss_pred cHH---HHHHHH---------------------HHHHHhcCCceeEEEEecCCchHHHHHHHHHhCce
Confidence 555 555444 3445678899999998886 67777766666554
No 69
>PTZ00395 Sec24-related protein; Provisional
Probab=86.00 E-value=4.1 Score=52.76 Aligned_cols=94 Identities=13% Similarity=0.075 Sum_probs=50.7
Q ss_pred HHHHHHHhccCc--cCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCcccccc
Q 003284 77 VDIFLHWLSTIP--FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQ 154 (834)
Q Consensus 77 ~~~fl~~Ld~I~--f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~ 154 (834)
-+.+...|+.|. |.--...+.|+.-||.+|++++.... -.-|.|++.+.-|=+....-..+. .+.
T Consensus 1054 RevIe~LLDkLPemFt~t~~~esCLGSALqAA~~aLk~~G---------GGGKIiVF~SSLPniGpGaLK~Re--~~~-- 1120 (1560)
T PTZ00395 1054 IDKINTLIDTIKSVSTTMQSYGSCGNSALKIAMDMLKERN---------GLGSICMFYTTTPNCGIGAIKELK--KDL-- 1120 (1560)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHhcC---------CCceEEEEEcCCCCCCCCcccccc--ccc--
Confidence 344555666664 22333457889999999999986311 123566666644522222210010 000
Q ss_pred ccchhh--hhhccCCCHHHHHHHHhhcCcEEEEec
Q 003284 155 NENNEA--QAESRLSDAETVAKSFVQCSVSLSVIC 187 (834)
Q Consensus 155 ~e~~~~--~~~~~l~d~e~lA~~~~e~~I~LSvIs 187 (834)
.|+... .+.+ +..+|.+|.+.+|.|.+.+
T Consensus 1121 KEk~Ll~pqd~F----YK~LA~ECsk~qISVDLFL 1151 (1560)
T PTZ00395 1121 QENFLEVKQKIF----YDSLLLDLYAFNISVDIFI 1151 (1560)
T ss_pred ccccccccchHH----HHHHHHHHHhcCCceEEEE
Confidence 111100 1122 3789999999999987654
No 70
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=85.65 E-value=13 Score=39.20 Aligned_cols=145 Identities=12% Similarity=0.214 Sum_probs=85.7
Q ss_pred CccEEEEEeccccchHhHHH-HHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHHH
Q 003284 3 EKQLIVAVEGTAAMGPYWQS-IVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFL 81 (834)
Q Consensus 3 ~~dvVFVID~Tasmg~yi~~-lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~fl 81 (834)
++.|++|||.++||.++++. ...+.++.++-.-.. ++ ..-++=+++|.+..-.-. .-..+.|.
T Consensus 1 rArV~LVLD~SGSM~~~yk~G~vQ~~~Er~lalA~~--~D------dDG~i~v~~Fs~~~~~~~--------~vt~~~~~ 64 (200)
T PF10138_consen 1 RARVYLVLDISGSMRPLYKDGTVQRVVERILALAAQ--FD------DDGEIDVWFFSTEFDRLP--------DVTLDNYE 64 (200)
T ss_pred CcEEEEEEeCCCCCchhhhCccHHHHHHHHHHHHhh--cC------CCCceEEEEeCCCCCcCC--------CcCHHHHH
Confidence 36799999999999998876 334444444433332 21 123677788877543111 22346777
Q ss_pred HHhccCccC----C--CCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccc
Q 003284 82 HWLSTIPFA----G--GGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQN 155 (834)
Q Consensus 82 ~~Ld~I~f~----G--GG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~ 155 (834)
.|++++... + || ..-+..|.+++..+-... .....-.+|.|+|-.|+...
T Consensus 65 ~~v~~~~~~~~~~~~~G~---t~y~~vm~~v~~~y~~~~-------~~~~P~~VlFiTDG~~~~~~-------------- 120 (200)
T PF10138_consen 65 GYVDELHAGLPDWGRMGG---TNYAPVMEDVLDHYFKRE-------PSDAPALVLFITDGGPDDRR-------------- 120 (200)
T ss_pred HHHHHHhccccccCCCCC---cchHHHHHHHHHHHhhcC-------CCCCCeEEEEEecCCccchH--------------
Confidence 777776432 2 33 223334555565553211 11224689999998886322
Q ss_pred cchhhhhhccCCCHHHHHHHHhhcCcEEEEeccCC--chhHHHHHH
Q 003284 156 ENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQ--LPKLTAIYN 199 (834)
Q Consensus 156 e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrq--lp~l~~Lfe 199 (834)
.++.+.++.+...|..+.|---. .-.|++|=+
T Consensus 121 ------------~~~~~i~~as~~pifwqFVgiG~~~f~fL~kLD~ 154 (200)
T PF10138_consen 121 ------------AIEKLIREASDEPIFWQFVGIGDSNFGFLEKLDD 154 (200)
T ss_pred ------------HHHHHHHhccCCCeeEEEEEecCCcchHHHHhhc
Confidence 24667777788889888886543 556666655
No 71
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=83.90 E-value=2.9 Score=40.43 Aligned_cols=76 Identities=20% Similarity=0.266 Sum_probs=42.0
Q ss_pred EEEEEeccccchH-hHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHHHHHh
Q 003284 6 LIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWL 84 (834)
Q Consensus 6 vVFVID~Tasmg~-yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~fl~~L 84 (834)
|+++||+++||.+ .+.....+ |.-+++.+ ..++-| ++-|+.-+....+.. ....+
T Consensus 1 i~vaiDtSGSis~~~l~~fl~e-v~~i~~~~-------------~~~v~v-i~~D~~v~~~~~~~~---------~~~~~ 56 (126)
T PF09967_consen 1 IVVAIDTSGSISDEELRRFLSE-VAGILRRF-------------PAEVHV-IQFDAEVQDVQVFRS---------LEDEL 56 (126)
T ss_pred CEEEEECCCCCCHHHHHHHHHH-HHHHHHhC-------------CCCEEE-EEECCEeeeeeEEec---------ccccc
Confidence 6899999999986 33333333 22233333 124434 444544433322222 33456
Q ss_pred ccCccCCCCCc-hhhHHHHHHH
Q 003284 85 STIPFAGGGFN-DAAIAEGLSE 105 (834)
Q Consensus 85 d~I~f~GGG~~-~~AvaEGLa~ 105 (834)
..+++.|||.. ...+.|-+.+
T Consensus 57 ~~~~~~GgGGTdf~pvf~~~~~ 78 (126)
T PF09967_consen 57 RDIKLKGGGGTDFRPVFEYLEE 78 (126)
T ss_pred cccccCCCCCCcchHHHHHHHh
Confidence 67888888865 5667776654
No 72
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=82.80 E-value=0.39 Score=53.65 Aligned_cols=7 Identities=43% Similarity=0.577 Sum_probs=0.0
Q ss_pred CCCCCCC
Q 003284 135 SNPHPLP 141 (834)
Q Consensus 135 SpP~~lp 141 (834)
|||-.-|
T Consensus 11 sP~pEeP 17 (468)
T PF11498_consen 11 SPPPEEP 17 (468)
T ss_dssp -------
T ss_pred CCCCCCc
Confidence 3333333
No 73
>PLN00162 transport protein sec23; Provisional
Probab=81.68 E-value=18 Score=45.11 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=29.4
Q ss_pred HHHHHHHHhhcCcEEEEeccC----CchhHHHHHHHhcCCC
Q 003284 169 AETVAKSFVQCSVSLSVICPK----QLPKLTAIYNAAKRNP 205 (834)
Q Consensus 169 ~e~lA~~~~e~~I~LSvIsPr----qlp~l~~Lfeka~~~~ 205 (834)
.+.||+.+.+.+|.|.+.+-- .+..++.|.++.+|..
T Consensus 331 Y~~la~~~~~~gisvDlF~~s~dqvglaem~~l~~~TGG~v 371 (761)
T PLN00162 331 YEGLAKQLVAQGHVLDVFACSLDQVGVAEMKVAVERTGGLV 371 (761)
T ss_pred HHHHHHHHHHcCceEEEEEccccccCHHHHhhhHhhcCcEE
Confidence 478999999999999887533 3688888888887764
No 74
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=78.60 E-value=40 Score=37.85 Aligned_cols=190 Identities=18% Similarity=0.269 Sum_probs=108.8
Q ss_pred ccEEEEEeccccch--HhHH---HHHHHHHHHH-HHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCH
Q 003284 4 KQLIVAVEGTAAMG--PYWQ---SIVSDYLEKI-IRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDV 77 (834)
Q Consensus 4 ~dvVFVID~Tasmg--~yi~---~lkt~YI~p~-le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~ 77 (834)
+-+++++|.+.+|. ++.+ .+...|.+-. .|+|...++ ..++++..||. +.-.....--|+
T Consensus 88 Rhl~l~lD~Seam~e~Df~p~r~a~vikya~~Fv~eFf~qNPi---------Sqlsii~irdg-----~a~~~s~~~gnp 153 (421)
T COG5151 88 RHLHLILDVSEAMDESDFLPTRRANVIKYAEGFVPEFFSQNPI---------SQLSIISIRDG-----CAKYTSSMDGNP 153 (421)
T ss_pred heeEEEEEhhhhhhhhhccchHHHHHHHHHHHHhHHHhccCCc---------hheeeeehhhh-----HHHHhhhcCCCH
Confidence 45899999999985 2322 3333343333 455555444 57889988886 221235566799
Q ss_pred HHHHHHhccCccCCCCCchhhHHHHHHHH-HhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCcccccccc
Q 003284 78 DIFLHWLSTIPFAGGGFNDAAIAEGLSEA-LMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNE 156 (834)
Q Consensus 78 ~~fl~~Ld~I~f~GGG~~~~AvaEGLa~A-L~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e 156 (834)
..++..|+++.---|-|+- -.||.-| ..++.. ....-|-+.+|-.|---.-
T Consensus 154 q~hi~~lkS~rd~~gnfSL---qNaLEmar~~l~~~---------~~H~trEvLiifgS~st~D---------------- 205 (421)
T COG5151 154 QAHIGQLKSKRDCSGNFSL---QNALEMARIELMKN---------TMHGTREVLIIFGSTSTRD---------------- 205 (421)
T ss_pred HHHHHHhhcccccCCChhH---HhHHHHhhhhhccc---------ccccceEEEEEEeecccCC----------------
Confidence 9999999999855555652 2333333 222211 1122344444443322111
Q ss_pred chhhhhhccCCCHHHHHHHHhhcCcEEEEeccC-CchhHHHHHHHhcCCCCCCCCCCCCCCCCCeEEEeeccchhhhh-h
Q 003284 157 NNEAQAESRLSDAETVAKSFVQCSVSLSVICPK-QLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARA-A 234 (834)
Q Consensus 157 ~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPr-qlp~l~~Lfeka~~~~~~~~~~~~~ak~p~hlVLLsg~~l~~r~-~ 234 (834)
.+|.......+..-+|.+-+|..- .+...|+|..+. ||.+.-++.|+|.+--|.|-- -
T Consensus 206 ---------Pgdi~~tid~Lv~~~IrV~~igL~aevaicKeickaT-----------n~~~e~~y~v~vde~Hl~el~~E 265 (421)
T COG5151 206 ---------PGDIAETIDKLVAYNIRVHFIGLCAEVAICKEICKAT-----------NSSTEGRYYVPVDEGHLSELMRE 265 (421)
T ss_pred ---------CccHHHHHHHHHhhceEEEEEeehhHHHHHHHHHhhc-----------CcCcCceeEeeecHHHHHHHHHh
Confidence 235566666677789999999876 356677777643 456667889999886555532 2
Q ss_pred cCCCCCCCCC-CCCCCcccCCC
Q 003284 235 LSRPGVANLA-PNQNPVKMDIA 255 (834)
Q Consensus 235 ~~r~~~~~~~-~~~~~~~~~~~ 255 (834)
++.|...+-+ ++-+.|||--+
T Consensus 266 ~~~P~~~n~~k~~~sLVkmGFP 287 (421)
T COG5151 266 LSHPTDFNGTKTDLSLVKMGFP 287 (421)
T ss_pred cCCCCCCCccccCceEEEecCC
Confidence 3344432222 23345555543
No 75
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=78.09 E-value=15 Score=43.08 Aligned_cols=88 Identities=17% Similarity=0.263 Sum_probs=57.8
Q ss_pred ccEEEEEeccccchHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHHHHH
Q 003284 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHW 83 (834)
Q Consensus 4 ~dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~fl~~ 83 (834)
-.|+++||+++||.-+=+.+-+-...-+++.--. .+-++.+.+|.+ .-.=.+.+....|..+++..
T Consensus 273 GpvilllD~SGSM~G~~e~~AKAvalAl~~~ala----------enR~~~~~lF~s----~~~~~el~~k~~~~~e~i~f 338 (437)
T COG2425 273 GPVILLLDKSGSMSGFKEQWAKAVALALMRIALA----------ENRDCYVILFDS----EVIEYELYEKKIDIEELIEF 338 (437)
T ss_pred CCEEEEEeCCCCcCCcHHHHHHHHHHHHHHHHHH----------hccceEEEEecc----cceeeeecCCccCHHHHHHH
Confidence 4689999999999988776665532233332211 235788899988 12334568889999999999
Q ss_pred hccCccCCCCCchhhHHHHHHHHHhhc
Q 003284 84 LSTIPFAGGGFNDAAIAEGLSEALMMF 110 (834)
Q Consensus 84 Ld~I~f~GGG~~~~AvaEGLa~AL~~f 110 (834)
|..+- ||| . -+..+|.+||+..
T Consensus 339 L~~~f--~GG-T--D~~~~l~~al~~~ 360 (437)
T COG2425 339 LSYVF--GGG-T--DITKALRSALEDL 360 (437)
T ss_pred Hhhhc--CCC-C--ChHHHHHHHHHHh
Confidence 98764 555 2 2344555566544
No 76
>KOG3768 consensus DEAD box RNA helicase [General function prediction only]
Probab=77.33 E-value=5 Score=47.95 Aligned_cols=116 Identities=13% Similarity=0.082 Sum_probs=74.7
Q ss_pred EEEEEeccccch-------HhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHH
Q 003284 6 LIVAVEGTAAMG-------PYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVD 78 (834)
Q Consensus 6 vVFVID~Tasmg-------~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~ 78 (834)
+.|+||++++|. .|++.+| ..|+-.|++-.. .-++ ..-||-|++|..+ +...+.+|...-.
T Consensus 4 ~lFllDTS~SM~qrah~~~tylD~AK-gaVEtFiK~R~r-~~~~-----~gdryml~Tfeep-----P~~vk~~~~~~~a 71 (888)
T KOG3768|consen 4 FLFLLDTSGSMSQRAHPQFTYLDLAK-GAVETFIKQRTR-VGRE-----TGDRYMLTTFEEP-----PKNVKVACEKLGA 71 (888)
T ss_pred EEEEEecccchhhhccCCchhhHHHH-HHHHHHHHHHhc-cccc-----cCceEEEEecccC-----chhhhhHHhhccc
Confidence 689999999995 4676666 335555555422 1222 2469999999876 3345678989999
Q ss_pred HHHHHhccCccCCCC-CchhhHHHHHHHHHhhcccCC-----CCCCCCCCccCCcEEEEeecC
Q 003284 79 IFLHWLSTIPFAGGG-FNDAAIAEGLSEALMMFSVAP-----NGSQNQQNVDGQRHCILVAAS 135 (834)
Q Consensus 79 ~fl~~Ld~I~f~GGG-~~~~AvaEGLa~AL~~f~~~~-----~~~~~~~~~~~qkhCILIa~S 135 (834)
.|..-|+++..-+|- -.+.++.||+.. --+.+.. -+.-|-+..-..-.+|||+|-
T Consensus 72 ~~~~eik~l~a~~~s~~~~~~~t~AFdl--LnlnR~qtGID~yGqGR~pf~lEP~~iI~iTDG 132 (888)
T KOG3768|consen 72 VVIEEIKKLHAPYGSCQLHHAITEAFDL--LNLNRVQTGIDGYGQGRLPFNLEPVTIILITDG 132 (888)
T ss_pred HHHHHHHhhcCccchhhhhHHHHHHhhh--hhhhhhhhcccccccccCccccCceEEEEEecC
Confidence 999999999988876 457888885432 1111111 011233344445567888876
No 77
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=74.25 E-value=15 Score=47.49 Aligned_cols=191 Identities=15% Similarity=0.123 Sum_probs=117.7
Q ss_pred CccEEEEEeccccchHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCccccee---eccCCCCHHH
Q 003284 3 EKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQ---RSGWTKDVDI 79 (834)
Q Consensus 3 ~~dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~---~~gfTsd~~~ 79 (834)
.|||||.+|.+++|...-=+|-+.-+.-+|+-|... --+-++.|...--+-.+++. .-+=.++.+.
T Consensus 225 pKdiviLlD~SgSm~g~~~~lak~tv~~iLdtLs~~-----------Dfvni~tf~~~~~~v~pc~~~~lvqAt~~nk~~ 293 (1104)
T KOG2353|consen 225 PKDIVILLDVSGSMSGLRLDLAKQTVNEILDTLSDN-----------DFVNILTFNSEVNPVSPCFNGTLVQATMRNKKV 293 (1104)
T ss_pred ccceEEEEeccccccchhhHHHHHHHHHHHHhcccC-----------CeEEEEeeccccCcccccccCceeecchHHHHH
Confidence 499999999999998776555555567777777441 24678888877653333311 1233677888
Q ss_pred HHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchh
Q 003284 80 FLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNE 159 (834)
Q Consensus 80 fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~ 159 (834)
|...++.+.+.| -+...+||..|+.++-+...+.....+..+.+-++||++..+-..-. .++
T Consensus 294 ~~~~i~~l~~k~----~a~~~~~~e~aF~lL~~~n~s~~~~~~~~C~~~iml~tdG~~~~~~~--------------If~ 355 (1104)
T KOG2353|consen 294 FKEAIETLDAKG----IANYTAALEYAFSLLRDYNDSRANTQRSPCNQAIMLITDGVDENAKE--------------IFE 355 (1104)
T ss_pred HHHHHhhhcccc----ccchhhhHHHHHHHHHHhccccccccccccceeeEEeecCCcccHHH--------------HHH
Confidence 998998887444 34466778888876654444444444555889999999877643221 111
Q ss_pred hhhhccCCCHHHHHHHHhhcCcEEEEeccC-CchhHHHHHHHhcCCCCCCCCCCCCCCCCCeEEEeeccchhhhhhcCCC
Q 003284 160 AQAESRLSDAETVAKSFVQCSVSLSVICPK-QLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAALSRP 238 (834)
Q Consensus 160 ~~~~~~l~d~e~lA~~~~e~~I~LSvIsPr-qlp~l~~Lfeka~~~~~~~~~~~~~ak~p~hlVLLsg~~l~~r~~~~r~ 238 (834)
++-|. .+.|.++-..-- +.-.+.+|+.-|.. ++.|=++--++.=++.+.++.-..++||
T Consensus 356 --~yn~~-----------~~~Vrvftflig~~~~~~~~~~wmac~-------n~gyy~~I~~~~~v~~~~~~y~~vlsRp 415 (1104)
T KOG2353|consen 356 --KYNWP-----------DKKVRVFTFLIGDEVYDLDEIQWMACA-------NKGYYVHIISIADVRENVLEYLDVLSRP 415 (1104)
T ss_pred --hhccC-----------CCceEEEEEEecccccccccchhhhhh-------CCCceEeccchhhcChHhhhhhhhhccc
Confidence 11110 345555543332 23333344443333 3456666667777777888888888888
Q ss_pred CCCC
Q 003284 239 GVAN 242 (834)
Q Consensus 239 ~~~~ 242 (834)
-+-.
T Consensus 416 ~vl~ 419 (1104)
T KOG2353|consen 416 LVLQ 419 (1104)
T ss_pred eeec
Confidence 8644
No 78
>COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]
Probab=62.99 E-value=61 Score=37.38 Aligned_cols=76 Identities=8% Similarity=0.121 Sum_probs=53.5
Q ss_pred CccEEEEEeccccch------HhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCC
Q 003284 3 EKQLIVAVEGTAAMG------PYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKD 76 (834)
Q Consensus 3 ~~dvVFVID~Tasmg------~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd 76 (834)
+++|++++|++.+|. ..|+.....- .-+..+... .+.++|+.+|.+..+ ..++.-+.
T Consensus 224 ~~~v~l~lD~~~~m~~~~~~~~~~e~av~~a-~~la~~~l~----------~gd~vg~~~~~~~~~------~~~~p~~G 286 (416)
T COG1721 224 GRTVVLVLDASRSMLFGSGVASKFEEAVRAA-ASLAYAALK----------NGDRVGLLIFGGGGP------KWIPPSRG 286 (416)
T ss_pred CceEEEEEeCCccccCCCCCccHHHHHHHHH-HHHHHHHHh----------CCCeeEEEEECCCcc------eeeCCCcc
Confidence 489999999999998 6777776552 222222221 357999999998866 55667777
Q ss_pred HHHHHHHhccCccCCCCCc
Q 003284 77 VDIFLHWLSTIPFAGGGFN 95 (834)
Q Consensus 77 ~~~fl~~Ld~I~f~GGG~~ 95 (834)
-+-|...|+.+........
T Consensus 287 ~~~l~~~l~~l~~~~~~~~ 305 (416)
T COG1721 287 RRHLARILKALALLRPAPE 305 (416)
T ss_pred hHHHHHHHHHhhccCCCCc
Confidence 7788887777766655543
No 79
>KOG1781 consensus Small Nuclear ribonucleoprotein splicing factor [RNA processing and modification]
Probab=60.89 E-value=13 Score=34.93 Aligned_cols=48 Identities=15% Similarity=0.226 Sum_probs=35.8
Q ss_pred eccccchHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecC
Q 003284 11 EGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTH 60 (834)
Q Consensus 11 D~Tasmg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~ 60 (834)
|+|+.++.| +.|....|+-++||+++.. +..+....+-++||||.|.-
T Consensus 39 ~~sGiLkGy-DqLlNlVLDd~vEylrdpd-d~~~~~~~tR~LGLvV~RGT 86 (108)
T KOG1781|consen 39 EASGILKGY-DQLLNLVLDDTVEYLRDPD-DPYKLTDETRKLGLVVCRGT 86 (108)
T ss_pred eeeeehhhH-HHHHHHHHHHHHHHhcCCC-CccchhhhhheeeeEEEccc
Confidence 678888887 8899999999999998732 12222234578999999865
No 80
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=57.55 E-value=15 Score=47.16 Aligned_cols=20 Identities=30% Similarity=0.303 Sum_probs=9.0
Q ss_pred Ccccceee--ccCCCCHHHHHH
Q 003284 63 YCACLVQR--SGWTKDVDIFLH 82 (834)
Q Consensus 63 ~~~~lv~~--~gfTsd~~~fl~ 82 (834)
++.+++.- -|-|+.+.++++
T Consensus 994 ~dtalti~a~kGh~kfv~~lln 1015 (2131)
T KOG4369|consen 994 WDTALTIPANKGHTKFVPKLLN 1015 (2131)
T ss_pred CCccceeecCCCchhhhHHhhC
Confidence 44445442 344554444444
No 81
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=55.65 E-value=1.2e+02 Score=37.18 Aligned_cols=75 Identities=17% Similarity=0.138 Sum_probs=43.2
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhhhhhccCCCHHHHHHHHhhc
Q 003284 100 AEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQC 179 (834)
Q Consensus 100 aEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~ 179 (834)
.|||.-|...+-. .....|.+|+|.+--|..-.+- ..|.. .+.. .+.-.|.+....+
T Consensus 499 GeAl~wa~~rL~~---------R~e~rKiL~ViSDG~P~D~~Tl---------svN~~----~~l~-~hLr~vi~~~e~~ 555 (600)
T TIGR01651 499 GEALMWAHQRLIA---------RPEQRRILMMISDGAPVDDSTL---------SVNPG----NYLE-RHLRAVIEEIETR 555 (600)
T ss_pred hHHHHHHHHHHhc---------CcccceEEEEEeCCCcCCcccc---------ccCch----hHHH-HHHHHHHHHHhcc
Confidence 4667777655532 2345788899999999865541 11110 0111 2445677777776
Q ss_pred -CcEEEEeccCCchhHHHHHH
Q 003284 180 -SVSLSVICPKQLPKLTAIYN 199 (834)
Q Consensus 180 -~I~LSvIsPrqlp~l~~Lfe 199 (834)
+|.|-.|.--. ....+|.
T Consensus 556 ~~vel~aigIg~--Dv~r~Y~ 574 (600)
T TIGR01651 556 SPVELLAIGIGH--DVTRYYR 574 (600)
T ss_pred CCceEEEeeccc--cHHHHcc
Confidence 89988875432 2445553
No 82
>TIGR00620 sporelyase spore photoproduct lyase. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=47.94 E-value=1e+02 Score=32.76 Aligned_cols=132 Identities=13% Similarity=0.165 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhccccccccCCCCccEEEEEE-eecCCCCcc---cceeeccCCCCHHHHHHHhccCccCCCCCchhhHH
Q 003284 25 SDYLEKIIRCFCVNELAGQKTSASNVELSLVT-FNTHGSYCA---CLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIA 100 (834)
Q Consensus 25 t~YI~p~le~f~~g~~~~~~~~~~~~~~gLVv-Y~d~~~~~~---~lv~~~gfTsd~~~fl~~Ld~I~f~GGG~~~~Ava 100 (834)
|.|+..+|++|.+. .+.++-+|+ |.+.+.+-+ .=-.++.|+-++..+.+-++.-. +.+.
T Consensus 9 Tg~l~~~I~ff~~~---------~~~~lef~TK~~nv~~Ll~l~~~~~t~~rfSlnp~~Ii~~~E~~T--------~sl~ 71 (199)
T TIGR00620 9 THTLKRAIEHFGQS---------DFGKLRFVTKFHHVDHLLDAKHNGKTRFRFSINADYVIKNFEPGT--------SPLD 71 (199)
T ss_pred cchHHHHHHHHccC---------CCcEEEEEEcccchhhHhcCCCCCCEEEEEEeCHHHHHHHhcCCC--------CCHH
Confidence 57888999999642 123343333 222222111 11257999999999988776433 4566
Q ss_pred HHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhhhhhccCCCHHHHHHHHh---
Q 003284 101 EGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFV--- 177 (834)
Q Consensus 101 EGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~--- 177 (834)
|=|.+|-.+.+. .=+.|++|+ |.-. -|+|+.....- .|.|.+.+.
T Consensus 72 ~Rl~Aa~k~a~a------------Gy~Vg~~~~-------PIi~----------~egW~e~Y~~l---~~~l~~~l~~~~ 119 (199)
T TIGR00620 72 KRIEAAVKVAKA------------GYPLGFIIA-------PIYI----------HEGWKEGYRNL---LEKLDEALPQDL 119 (199)
T ss_pred HHHHHHHHHHHc------------CCeEEEEee-------ceEe----------eCChHHHHHHH---HHHHHHhCCHhh
Confidence 666666666531 124566664 3211 14455433333 366666666
Q ss_pred hcCcEEEEeccCCchhHHHHHHHhcCCC
Q 003284 178 QCSVSLSVICPKQLPKLTAIYNAAKRNP 205 (834)
Q Consensus 178 e~~I~LSvIsPrqlp~l~~Lfeka~~~~ 205 (834)
.++|++.+|+=|=.+.++++.++.-.+.
T Consensus 120 ~~dl~~e~i~~R~t~~~k~~i~~~fP~s 147 (199)
T TIGR00620 120 RHDITFEVIQHRFTKPAKRVIEKNYPKT 147 (199)
T ss_pred hcCeEEEEEEEEcCHHHHHHHHHhCCCC
Confidence 6779999999999999999999877664
No 83
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=45.33 E-value=84 Score=35.06 Aligned_cols=92 Identities=15% Similarity=0.216 Sum_probs=64.9
Q ss_pred CcccceeeccCCCCHHHHHHHhccCccCCCCCc-hhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCC
Q 003284 63 YCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFN-DAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLP 141 (834)
Q Consensus 63 ~~~~lv~~~gfTsd~~~fl~~Ld~I~f~GGG~~-~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp 141 (834)
|.+.++-|......+.+|.+| ..++++=+|++ .+.=..+|+..+++.+.... ...+++.+|++..+.
T Consensus 95 y~D~iviR~~~~~~~~~~a~~-s~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g~--------l~g~~va~vGD~~~~--- 162 (301)
T TIGR00670 95 YSDAIVIRHPLEGAARLAAEV-SEVPVINAGDGSNQHPTQTLLDLYTIYEEFGR--------LDGLKIALVGDLKYG--- 162 (301)
T ss_pred hCCEEEEECCchhHHHHHHhh-CCCCEEeCCCCCCCCcHHHHHHHHHHHHHhCC--------CCCCEEEEEccCCCC---
Confidence 556677777777788888877 47888888864 68888889888888764321 112455555532211
Q ss_pred CCcccCCccccccccchhhhhhccCCCHHHHHHHHhhcCcEEEEeccCCc
Q 003284 142 TPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQL 191 (834)
Q Consensus 142 ~pv~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrql 191 (834)
..+-.++..++..|+.+.+++|+.+
T Consensus 163 -------------------------~v~~Sl~~~~a~~g~~v~~~~P~~~ 187 (301)
T TIGR00670 163 -------------------------RTVHSLAEALTRFGVEVYLISPEEL 187 (301)
T ss_pred -------------------------cHHHHHHHHHHHcCCEEEEECCccc
Confidence 1356678888999999999999986
No 84
>KOG2326 consensus DNA-binding subunit of a DNA-dependent protein kinase (Ku80 autoantigen) [Replication, recombination and repair]
Probab=45.23 E-value=90 Score=37.99 Aligned_cols=146 Identities=14% Similarity=0.053 Sum_probs=86.5
Q ss_pred CccEEEEEeccccchHhHHHHHHHHHHHHHHHHhcc----ccccccCCCCccEEEEEEeecCCC---------Cccccee
Q 003284 3 EKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVN----ELAGQKTSASNVELSLVTFNTHGS---------YCACLVQ 69 (834)
Q Consensus 3 ~~dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~~g----~~~~~~~~~~~~~~gLVvY~d~~~---------~~~~lv~ 69 (834)
..-.|||+|..-+|+--.+..+++ ++.++.||... .++++ ..-.|++|.|+.-+. |-.--|.
T Consensus 4 se~ttfilDvG~~Ms~~~~~~~S~-fE~a~~y~~~~lsrK~fa~r----ktD~is~vlyncD~ten~legg~~fqnisvl 78 (669)
T KOG2326|consen 4 SESTTFILDVGPSMSKNNETGKSN-FEKAMAYLEYTLSRKSFASR----KTDWISCVLYNCDVTENSLEGGNVFQNISVL 78 (669)
T ss_pred CcceEEEEecCccccccCCCcccc-HHHHHHHHHHHHHHHHhhcc----CCceEEEEEecCCCccCccccccccceeEEe
Confidence 355788999999998776655555 35555444221 12211 247899999998765 2222466
Q ss_pred eccCCCCHHHHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCc
Q 003284 70 RSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQM 149 (834)
Q Consensus 70 ~~gfTsd~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~ 149 (834)
+.-+|.+...|++.+....-.+-..++ .-.+|.....+.....+ .....+|+.||+.+-=-
T Consensus 79 ~p~~tpaf~~l~k~~~~~~qqns~q~D--f~gal~vs~dL~~qhe~-----~~k~~~kr~Il~~~~l~------------ 139 (669)
T KOG2326|consen 79 APVTTPAFIGLIKRLKQYCQQNSHQSD--FEGALSVSQDLLVQHED-----IKKQFQKRKILKQIVLF------------ 139 (669)
T ss_pred ecccchhhHHHHHHHHHhcCCCccccc--hhhhHHHHHHHHHHHHh-----ccchhhceEEEEeeccc------------
Confidence 677899999999998855545544333 11222222222221111 12345778888863110
Q ss_pred cccccccchhhhhhccCCCHHHHHHHHhhcCcEEEEe
Q 003284 150 QNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVI 186 (834)
Q Consensus 150 ~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvI 186 (834)
+ .+.|-.-+++.+.+++|.|=++
T Consensus 140 ------~--------dfsd~~~ive~l~~~didL~~~ 162 (669)
T KOG2326|consen 140 ------T--------DFSDDLFIVEDLTDEDIDLLTE 162 (669)
T ss_pred ------c--------cchhhHHHHHHHhhcCcceeEe
Confidence 1 1123333899999999999998
No 85
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=42.08 E-value=86 Score=35.55 Aligned_cols=92 Identities=12% Similarity=0.088 Sum_probs=65.0
Q ss_pred CCcccceeeccCCCCHHHHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCC
Q 003284 62 SYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLP 141 (834)
Q Consensus 62 ~~~~~lv~~~gfTsd~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp 141 (834)
.|.+.+|-|+.-...+.+|-.+. .|+.+=+|+..+.=+.+|+-.+++.+.... . ..+++.+|++.- +
T Consensus 100 ~y~D~iviR~~~~~~~~~~a~~~-~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~-------l-~g~~va~vGd~~-~--- 166 (331)
T PRK02102 100 RMYDGIEYRGFKQEIVEELAKYS-GVPVWNGLTDEWHPTQMLADFMTMKEHFGP-------L-KGLKLAYVGDGR-N--- 166 (331)
T ss_pred hcCCEEEEECCchHHHHHHHHhC-CCCEEECCCCCCChHHHHHHHHHHHHHhCC-------C-CCCEEEEECCCc-c---
Confidence 46777888887777788887775 577776676678888999999988765321 1 124445554321 1
Q ss_pred CCcccCCccccccccchhhhhhccCCCHHHHHHHHhhcCcEEEEeccCCc
Q 003284 142 TPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQL 191 (834)
Q Consensus 142 ~pv~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrql 191 (834)
..+..++..++..|+.|.+++|+.+
T Consensus 167 -------------------------~v~~Sl~~~~~~~g~~v~~~~P~~~ 191 (331)
T PRK02102 167 -------------------------NMANSLMVGGAKLGMDVRICAPKEL 191 (331)
T ss_pred -------------------------cHHHHHHHHHHHcCCEEEEECCccc
Confidence 1346677888899999999999986
No 86
>PLN02342 ornithine carbamoyltransferase
Probab=41.59 E-value=86 Score=35.85 Aligned_cols=100 Identities=14% Similarity=0.150 Sum_probs=64.8
Q ss_pred CcccceeeccCCCCHHHHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCC
Q 003284 63 YCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPT 142 (834)
Q Consensus 63 ~~~~lv~~~gfTsd~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~ 142 (834)
|.+.++-|+.-...+.+|-+|. +++++=+|+..++=+.+|+..+++.+.... .+ -+++.+|+|-+
T Consensus 140 y~D~IviR~~~~~~~~~la~~~-~vPVINA~~~~~HPtQaLaDl~Ti~e~~G~-------l~-glkva~vGD~~------ 204 (348)
T PLN02342 140 YNDIIMARVFAHQDVLDLAEYS-SVPVINGLTDYNHPCQIMADALTIIEHIGR-------LE-GTKVVYVGDGN------ 204 (348)
T ss_pred hCCEEEEeCCChHHHHHHHHhC-CCCEEECCCCCCChHHHHHHHHHHHHHhCC-------cC-CCEEEEECCCc------
Confidence 5666777776666677777664 576666665567888888888888765321 12 23444454411
Q ss_pred CcccCCccccccccchhhhhhccCCCHHHHHHHHhhcCcEEEEeccCCchhHHHHHHHh
Q 003284 143 PVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQLPKLTAIYNAA 201 (834)
Q Consensus 143 pv~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrqlp~l~~Lfeka 201 (834)
+.+-.++.++...|+.+.+++|+.+..-.++.+++
T Consensus 205 ------------------------nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a 239 (348)
T PLN02342 205 ------------------------NIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKA 239 (348)
T ss_pred ------------------------hhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHH
Confidence 13456778888899999999999874334444443
No 87
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=40.23 E-value=1.5e+02 Score=34.89 Aligned_cols=35 Identities=6% Similarity=0.173 Sum_probs=27.0
Q ss_pred CccEEEEEeccccchHhHHHHHHHHHHHHHHHHhc
Q 003284 3 EKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCV 37 (834)
Q Consensus 3 ~~dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~~ 37 (834)
++=|++++|.++||+.+-+.|-+.+-..+..++..
T Consensus 246 ~AVv~~lmDvSGSM~~~~K~lak~ff~~l~~fL~~ 280 (421)
T PF04285_consen 246 NAVVFCLMDVSGSMGEFKKDLAKRFFFWLYLFLRR 280 (421)
T ss_pred cEEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 45577889999999999988877766666666643
No 88
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=38.14 E-value=35 Score=44.17 Aligned_cols=7 Identities=29% Similarity=1.161 Sum_probs=3.5
Q ss_pred ecccccc
Q 003284 570 KVWEGSL 576 (834)
Q Consensus 570 kvweg~l 576 (834)
.+|.|..
T Consensus 1672 Q~~~gq~ 1678 (2131)
T KOG4369|consen 1672 QIWPGQW 1678 (2131)
T ss_pred ccCcccc
Confidence 3455554
No 89
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=36.31 E-value=1.5e+02 Score=33.33 Aligned_cols=94 Identities=13% Similarity=0.193 Sum_probs=60.7
Q ss_pred CCcccceeeccCCCCHHHHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCC
Q 003284 62 SYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLP 141 (834)
Q Consensus 62 ~~~~~lv~~~gfTsd~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp 141 (834)
.|.+.++-|+.-..++.+|.+| ..++.+=+|+..+.=..+|+-.+++.+...... .+ .+++..|++ | .
T Consensus 96 ~~~D~iv~R~~~~~~~~~~a~~-~~vPVINag~~~~HPtQaL~Dl~Ti~e~~g~~~-----l~-g~~va~vGd---~--~ 163 (311)
T PRK14804 96 RNVSVIMARLKKHEDLLVMKNG-SQVPVINGCDNMFHPCQSLADIMTIALDSPEIP-----LN-QKQLTYIGV---H--N 163 (311)
T ss_pred hcCCEEEEeCCChHHHHHHHHH-CCCCEEECCCCCCChHHHHHHHHHHHHHhCCCC-----CC-CCEEEEECC---C--C
Confidence 3566677777666667777666 457776666556888888888888876432100 11 133334442 1 1
Q ss_pred CCcccCCccccccccchhhhhhccCCCHHHHHHHHhhcCcEEEEeccCCch
Q 003284 142 TPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQLP 192 (834)
Q Consensus 142 ~pv~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrqlp 192 (834)
..+-.++..++..|+.|.+++|+.++
T Consensus 164 -------------------------rv~~Sl~~~~~~~G~~v~~~~P~~~~ 189 (311)
T PRK14804 164 -------------------------NVVNSLIGITAALGIHLTLVTPIAAK 189 (311)
T ss_pred -------------------------cHHHHHHHHHHHcCCEEEEECCCCcc
Confidence 13456777888899999999999975
No 90
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=35.99 E-value=1.4e+02 Score=33.43 Aligned_cols=91 Identities=13% Similarity=0.177 Sum_probs=62.0
Q ss_pred CCcccceeeccCCCCHHHHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCC
Q 003284 62 SYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLP 141 (834)
Q Consensus 62 ~~~~~lv~~~gfTsd~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp 141 (834)
.|.+.++-|+.--..+.+|-+|. .++.+=+|+..+.=+.+|+..+++.+...+ .+ .+++..|++.+
T Consensus 92 ~y~D~iviR~~~~~~~~~~a~~~-~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~-------l~-g~kva~vGD~~----- 157 (302)
T PRK14805 92 CWADAIVARVFSHSTIEQLAEHG-SVPVINALCDLYHPCQALADFLTLAEQFGD-------VS-KVKLAYVGDGN----- 157 (302)
T ss_pred HhCCEEEEeCCChhHHHHHHHhC-CCCEEECCCCCCChHHHHHHHHHHHHHhCC-------cC-CcEEEEEcCCC-----
Confidence 35666777777677778887774 577776776668888889888888764321 11 24445555410
Q ss_pred CCcccCCccccccccchhhhhhccCCCHHHHHHHHhhcCcEEEEeccCCc
Q 003284 142 TPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQL 191 (834)
Q Consensus 142 ~pv~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrql 191 (834)
..+-.++.+++..|+.+.+++|+.+
T Consensus 158 -------------------------~v~~S~~~~~~~~g~~v~~~~P~~~ 182 (302)
T PRK14805 158 -------------------------NVTHSLMYGAAILGATMTVICPPGH 182 (302)
T ss_pred -------------------------ccHHHHHHHHHHcCCEEEEECCchh
Confidence 1234567778889999999999986
No 91
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=35.62 E-value=2.7e+02 Score=30.05 Aligned_cols=20 Identities=5% Similarity=0.091 Sum_probs=14.9
Q ss_pred ccEEEEEeccccchHh-HHHH
Q 003284 4 KQLIVAVEGTAAMGPY-WQSI 23 (834)
Q Consensus 4 ~dvVFVID~Tasmg~y-i~~l 23 (834)
.=|-|+||+++||... ++..
T Consensus 13 ~~VtlLID~SGSMrgr~~~vA 33 (219)
T PF11775_consen 13 TVVTLLIDCSGSMRGRPIEVA 33 (219)
T ss_pred eEEEEEEeCCcCCCCChHHHH
Confidence 3467899999999974 4433
No 92
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=33.75 E-value=5.4e+02 Score=32.68 Aligned_cols=170 Identities=11% Similarity=0.161 Sum_probs=85.5
Q ss_pred cEEEEEeccccchHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCC-------C----------cccc
Q 003284 5 QLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGS-------Y----------CACL 67 (834)
Q Consensus 5 dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~-------~----------~~~l 67 (834)
-.||.||-|- +.++.--+.-++|-+.++ ++....--.+.|+|+|.|-+.=- . +++.
T Consensus 278 ~yvFlIDVS~------~a~~~g~~~a~~r~Il~~-l~~~~~~dpr~kIaii~fD~sl~ffk~s~d~~~~~~~vsdld~pF 350 (861)
T COG5028 278 VYVFLIDVSF------EAIKNGLVKAAIRAILEN-LDQIPNFDPRTKIAIICFDSSLHFFKLSPDLDEQMLIVSDLDEPF 350 (861)
T ss_pred EEEEEEEeeh------HhhhcchHHHHHHHHHhh-ccCCCCCCCcceEEEEEEcceeeEEecCCCCccceeeeccccccc
Confidence 4799999883 333333333333333221 11000012479999999865421 1 1111
Q ss_pred eeec--cCCCCHHHHHH----HhccC--ccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCC
Q 003284 68 VQRS--GWTKDVDIFLH----WLSTI--PFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHP 139 (834)
Q Consensus 68 v~~~--gfTsd~~~fl~----~Ld~I--~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~ 139 (834)
+-+. .|-.+.+..+. .|+.+ -|.+-+....|+..||.+|-.+... -.-|.|+++..-|=-+
T Consensus 351 lPf~s~~fv~pl~~~k~~~etLl~~~~~If~d~~~pk~~~G~aLk~a~~l~g~-----------~GGkii~~~stlPn~G 419 (861)
T COG5028 351 LPFPSGLFVLPLKSCKQIIETLLDRVPRIFQDNKSPKNALGPALKAAKSLIGG-----------TGGKIIVFLSTLPNMG 419 (861)
T ss_pred ccCCcchhcccHHHHHHHHHHHHHHhhhhhcccCCCccccCHHHHHHHHHhhc-----------cCceEEEEeecCCCcc
Confidence 1111 12223333333 34444 3556667789999999999987753 1235555554434333
Q ss_pred CCCCcccCCccccccccchhhhhhccCCC--HHHHHHHHhhcCcEEEEeccC----CchhHHHHHHHhc
Q 003284 140 LPTPVYRPQMQNLDQNENNEAQAESRLSD--AETVAKSFVQCSVSLSVICPK----QLPKLTAIYNAAK 202 (834)
Q Consensus 140 lp~pv~~p~~~~~~~~e~~~~~~~~~l~d--~e~lA~~~~e~~I~LSvIsPr----qlp~l~~Lfeka~ 202 (834)
+. ++++.|-.+. .++...| .+.+|.+|.|-+|++.+-.-. +.++|-.|-+-.+
T Consensus 420 ~G---------kl~~r~d~e~-~ll~c~d~fYk~~a~e~~k~gIsvd~Flt~~~yidvaTls~l~~~T~ 478 (861)
T COG5028 420 IG---------KLQLREDKES-SLLSCKDSFYKEFAIECSKVGISVDLFLTSEDYIDVATLSHLCRYTG 478 (861)
T ss_pred cc---------cccccccchh-hhccccchHHHHHHHHHHHhcceEEEEeccccccchhhhcchhhccC
Confidence 33 2222221111 1111122 378999999999999887552 2344444444333
No 93
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=33.05 E-value=1.6e+02 Score=32.80 Aligned_cols=91 Identities=14% Similarity=0.175 Sum_probs=60.8
Q ss_pred CCcccceeeccCCCCHHHHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCC
Q 003284 62 SYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLP 141 (834)
Q Consensus 62 ~~~~~lv~~~gfTsd~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp 141 (834)
+|.+.+|-|+.--..+.+|.++. +++++=+|+..++=+.+|+..+.+.+.... .+ ..++..|++ +.
T Consensus 97 ~~~D~iv~R~~~~~~~~~~a~~~-~vPVINag~~~~HPtQaL~Dl~Ti~e~~g~-------l~-gl~i~~vGd---~~-- 162 (304)
T PRK00779 97 RYVDAIMIRTFEHETLEELAEYS-TVPVINGLTDLSHPCQILADLLTIYEHRGS-------LK-GLKVAWVGD---GN-- 162 (304)
T ss_pred HhCCEEEEcCCChhHHHHHHHhC-CCCEEeCCCCCCChHHHHHHHHHHHHHhCC-------cC-CcEEEEEeC---CC--
Confidence 35566666766666677776664 566665555678888999998888765321 11 244555554 11
Q ss_pred CCcccCCccccccccchhhhhhccCCCHHHHHHHHhhcCcEEEEeccCCc
Q 003284 142 TPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQL 191 (834)
Q Consensus 142 ~pv~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrql 191 (834)
..+-.++..+...|+.+.+++|+.+
T Consensus 163 -------------------------~v~~Sl~~~l~~~g~~v~~~~P~~~ 187 (304)
T PRK00779 163 -------------------------NVANSLLLAAALLGFDLRVATPKGY 187 (304)
T ss_pred -------------------------ccHHHHHHHHHHcCCEEEEECCccc
Confidence 1345677888899999999999985
No 94
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=32.15 E-value=1.4e+02 Score=33.37 Aligned_cols=93 Identities=13% Similarity=0.151 Sum_probs=64.4
Q ss_pred CC-cccceeeccCCCCHHHHHHHhccCccCCCCC-chhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCC
Q 003284 62 SY-CACLVQRSGWTKDVDIFLHWLSTIPFAGGGF-NDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHP 139 (834)
Q Consensus 62 ~~-~~~lv~~~gfTsd~~~fl~~Ld~I~f~GGG~-~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~ 139 (834)
.| .+.++-|..--..+.+|-+| .+|+++=+|+ ..+.=+.+|+..+++.+.... ...+++.+|++....
T Consensus 99 ~y~~D~iv~R~~~~~~~~~~a~~-~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~G~--------l~g~kv~~vGD~~~~- 168 (305)
T PRK00856 99 AMGADAIVIRHPQSGAARLLAES-SDVPVINAGDGSHQHPTQALLDLLTIREEFGR--------LEGLKVAIVGDIKHS- 168 (305)
T ss_pred hcCCCEEEEeCCChHHHHHHHHH-CCCCEEECCCCCCCCcHHHHHHHHHHHHHhCC--------CCCCEEEEECCCCCC-
Confidence 36 66777777666677777777 6788888886 477888888888888764321 112455666532111
Q ss_pred CCCCcccCCccccccccchhhhhhccCCCHHHHHHHHhhcCcEEEEeccCCc
Q 003284 140 LPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQL 191 (834)
Q Consensus 140 lp~pv~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrql 191 (834)
..+-.++.+++..|+.|.+++|+.+
T Consensus 169 ---------------------------~v~~Sl~~~~~~~g~~~~~~~P~~~ 193 (305)
T PRK00856 169 ---------------------------RVARSNIQALTRLGAEVRLIAPPTL 193 (305)
T ss_pred ---------------------------cHHHHHHHHHHHcCCEEEEECCccc
Confidence 1455677888889999999999985
No 95
>PF13362 Toprim_3: Toprim domain
Probab=31.33 E-value=99 Score=27.91 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=28.6
Q ss_pred CCHHHHHHHHhhcCcEEEEecc-CCchhHHHHHHHhc
Q 003284 167 SDAETVAKSFVQCSVSLSVICP-KQLPKLTAIYNAAK 202 (834)
Q Consensus 167 ~d~e~lA~~~~e~~I~LSvIsP-rqlp~l~~Lfeka~ 202 (834)
..++.+++.+...++.+.++.| ++-..+.+++.+.+
T Consensus 58 ~~a~~~~~~~~~~g~~~~~~~p~~~g~D~ND~l~~~G 94 (96)
T PF13362_consen 58 KAAEKAAERLEAAGIAVSIVEPGPEGKDWNDLLQARG 94 (96)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCCCCchHHHHHHhhC
Confidence 4578899999999999999999 55557777776544
No 96
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=30.64 E-value=5.4e+02 Score=30.66 Aligned_cols=151 Identities=11% Similarity=0.146 Sum_probs=91.4
Q ss_pred ccEEEEEeccccchHh--HHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHHH
Q 003284 4 KQLIVAVEGTAAMGPY--WQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFL 81 (834)
Q Consensus 4 ~dvVFVID~Tasmg~y--i~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~fl 81 (834)
+-+|+.|||+-+|-.| |--+|.. --.|.++... .| ..-++.+|+|++|.. +.. +.
T Consensus 464 aAvallvDtS~SM~~eGRw~PmKQt--ALALhHLv~T-----rf--rGD~l~~i~Fgr~A~--~v~---------v~--- 520 (652)
T COG4867 464 AAVALLVDTSFSMVMEGRWLPMKQT--ALALHHLVCT-----RF--RGDALQIIAFGRYAR--TVT---------AA--- 520 (652)
T ss_pred cceeeeeeccHHHHHhccCCchHHH--HHHHHHHHHh-----cC--CCcceEEEeccchhc--ccC---------HH---
Confidence 5689999999999776 3333332 2334554332 33 345789999999954 221 12
Q ss_pred HHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhhh
Q 003284 82 HWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQ 161 (834)
Q Consensus 82 ~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~~ 161 (834)
-|..+. |=++.+-...-||.-|=.+|.+- ....+.+++|++-.|.-+-.+ ++.--+
T Consensus 521 -eLt~l~--~v~eqgTNlhhaL~LA~r~l~Rh---------~~~~~~il~vTDGePtAhle~-----------~DG~~~- 576 (652)
T COG4867 521 -ELTGLA--GVYEQGTNLHHALALAGRHLRRH---------AGAQPVVLVVTDGEPTAHLED-----------GDGTSV- 576 (652)
T ss_pred -HHhcCC--CccccccchHHHHHHHHHHHHhC---------cccCceEEEEeCCCccccccC-----------CCCceE-
Confidence 223332 22355778889999999999752 234678889999988654432 010000
Q ss_pred hhccCCCHHHHHH------HHhhcCcEEEEeccCCchhHHHHHHHh
Q 003284 162 AESRLSDAETVAK------SFVQCSVSLSVICPKQLPKLTAIYNAA 201 (834)
Q Consensus 162 ~~~~l~d~e~lA~------~~~e~~I~LSvIsPrqlp~l~~Lfeka 201 (834)
+..|.-|++++++ .|.++||++-+.-.-.=|-|.-..+.-
T Consensus 577 ~f~yp~DP~t~~~Tvr~~d~~~r~G~q~t~FrLg~DpgL~~Fv~qv 622 (652)
T COG4867 577 FFDYPPDPRTIAHTVRGFDDMARLGAQVTIFRLGSDPGLARFIDQV 622 (652)
T ss_pred ecCCCCChhHHHHHHHHHHHHHhccceeeEEeecCCHhHHHHHHHH
Confidence 1123347777764 467789988887776667666655543
No 97
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=30.11 E-value=1.9e+02 Score=32.23 Aligned_cols=90 Identities=13% Similarity=0.190 Sum_probs=59.1
Q ss_pred CcccceeeccCCCCHHHHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCC
Q 003284 63 YCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPT 142 (834)
Q Consensus 63 ~~~~lv~~~gfTsd~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~ 142 (834)
|.+.++-|+.-...+..|.+|.+ ++++=+|...++=+.+|+..+++.+.... .+ ..++..|++. -
T Consensus 94 y~D~iv~R~~~~~~~~~~a~~~~-vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~-------l~-g~~v~~vGd~-----~- 158 (304)
T TIGR00658 94 YVDGIMARVYKHEDVEELAKYAS-VPVINGLTDLFHPCQALADLLTIIEHFGK-------LK-GVKVVYVGDG-----N- 158 (304)
T ss_pred hCCEEEEECCChHHHHHHHHhCC-CCEEECCCCCCChHHHHHHHHHHHHHhCC-------CC-CcEEEEEeCC-----C-
Confidence 55556666666666777777754 55554455567888888888888765321 11 2344444432 0
Q ss_pred CcccCCccccccccchhhhhhccCCCHHHHHHHHhhcCcEEEEeccCCc
Q 003284 143 PVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQL 191 (834)
Q Consensus 143 pv~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrql 191 (834)
..+-.++..+...|+.+.+++|+.+
T Consensus 159 ------------------------~v~~Sl~~~l~~~g~~v~~~~P~~~ 183 (304)
T TIGR00658 159 ------------------------NVCNSLMLAGAKLGMDVVVATPEGY 183 (304)
T ss_pred ------------------------chHHHHHHHHHHcCCEEEEECCchh
Confidence 1345677888999999999999986
No 98
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=29.96 E-value=1.5e+02 Score=33.31 Aligned_cols=91 Identities=12% Similarity=0.162 Sum_probs=61.7
Q ss_pred ccceeeccCCCCHHHHHHHhccCccCCCCCc-hhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCC
Q 003284 65 ACLVQRSGWTKDVDIFLHWLSTIPFAGGGFN-DAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTP 143 (834)
Q Consensus 65 ~~lv~~~gfTsd~~~fl~~Ld~I~f~GGG~~-~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~p 143 (834)
+.+|-|+.--..+.+|..|.+++.++=+|++ .++=+.+|+-.+++.+.... . ...++..|++..+.
T Consensus 103 D~iv~R~~~~~~~~~~a~~~~~vPvINag~g~~~HPtQaLaDl~Ti~e~~g~-------l-~g~~va~vGD~~~~----- 169 (310)
T PRK13814 103 YFFIVRHSENETPEQIAKQLSSGVVINAGDGNHQHPSQALIDLMTIKQHKPH-------W-NKLCVTIIGDIRHS----- 169 (310)
T ss_pred CEEEEeCCchhHHHHHHHhCCCCCeEECCcCCCCCchHHHHHHHHHHHHhCC-------c-CCcEEEEECCCCCC-----
Confidence 4555666656667778788777888888764 57888889888888765321 1 12344444432210
Q ss_pred cccCCccccccccchhhhhhccCCCHHHHHHHHhhcCc-EEEEeccCCc
Q 003284 144 VYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSV-SLSVICPKQL 191 (834)
Q Consensus 144 v~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I-~LSvIsPrql 191 (834)
..+-.++..++..|+ .+.++||+.+
T Consensus 170 -----------------------rv~~Sl~~~~a~~g~~~v~~~~P~~~ 195 (310)
T PRK13814 170 -----------------------RVANSLMDGLVTMGVPEIRLVGPSSL 195 (310)
T ss_pred -----------------------cHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 245677888999998 9999999874
No 99
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=29.26 E-value=2.1e+02 Score=32.53 Aligned_cols=91 Identities=13% Similarity=0.178 Sum_probs=58.9
Q ss_pred CcccceeeccCCCCHHHHHHHhccCccCCCCCchhhHHHHHHHHHhhccc-CCCCCCCCCCccCCcEEEEeecCCCCCCC
Q 003284 63 YCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSV-APNGSQNQQNVDGQRHCILVAASNPHPLP 141 (834)
Q Consensus 63 ~~~~lv~~~gfTsd~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~-~~~~~~~~~~~~~qkhCILIa~SpP~~lp 141 (834)
|.+.+|-|+.-...+.+|-+|. .|+.+=+|...++=+.+|+..+++.+. ... . ..+++.+|+|. + .
T Consensus 100 y~D~iviR~~~~~~~~~~a~~s-~vPVINa~~~~~HPtQaL~Dl~Ti~e~~~g~-------l-~g~kia~vGD~--~--~ 166 (332)
T PRK04284 100 MYDGIEYRGFSQRTVETLAEYS-GVPVWNGLTDEDHPTQVLADFLTAKEHLKKP-------Y-KDIKFTYVGDG--R--N 166 (332)
T ss_pred hCCEEEEecCchHHHHHHHHhC-CCCEEECCCCCCChHHHHHHHHHHHHHhcCC-------c-CCcEEEEecCC--C--c
Confidence 5556666766666777777775 566555555567788888888888764 121 1 12455556542 1 0
Q ss_pred CCcccCCccccccccchhhhhhccCCCHHHHHHHHhhcCcEEEEeccCCc
Q 003284 142 TPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQL 191 (834)
Q Consensus 142 ~pv~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrql 191 (834)
+ .+-.++.+++..|+.|.+++|+.+
T Consensus 167 ~-------------------------v~~Sl~~~~~~~g~~v~~~~P~~~ 191 (332)
T PRK04284 167 N-------------------------VANALMQGAAIMGMDFHLVCPKEL 191 (332)
T ss_pred c-------------------------hHHHHHHHHHHcCCEEEEECCccc
Confidence 1 234567777888999999999975
No 100
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=28.83 E-value=2.2e+02 Score=32.67 Aligned_cols=110 Identities=8% Similarity=0.094 Sum_probs=63.8
Q ss_pred CCcccceeeccCC-----CCHHHHHHHh----------ccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCC
Q 003284 62 SYCACLVQRSGWT-----KDVDIFLHWL----------STIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQ 126 (834)
Q Consensus 62 ~~~~~lv~~~gfT-----sd~~~fl~~L----------d~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~q 126 (834)
.|.+.+|-|+.+. ..+.+|.++. ..++++=+|...++=..+|+-.+++.+..... ...+ -
T Consensus 96 ~y~D~Iv~R~~~~~~~~~~~l~~~a~~~~~~~~~~~~~s~vPVINa~~~~~HPtQaLaDl~Ti~e~~G~~----~~l~-g 170 (357)
T TIGR03316 96 FFADGIGIRDDMYIGVGNAYMREVAKYVQEGYKDGVLEQRPPLVNLQCDIDHPTQAMADIMTLQEKFGGI----ENLK-G 170 (357)
T ss_pred HhCcEEEEeCCCccccccHHHHHHHHhhhhccccccccCCCCEEECCCCCCCchHHHHHHHHHHHHhCCc----cccC-C
Confidence 3666777776542 3345777784 56887777766678888888888887643210 0011 1
Q ss_pred cEEEEeec-CCCCCCCCCcccCCccccccccchhhhhhccCCCHHHHHHHHhhcCcEEEEeccCCchhHHHHHHH
Q 003284 127 RHCILVAA-SNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQLPKLTAIYNA 200 (834)
Q Consensus 127 khCILIa~-SpP~~lp~pv~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrqlp~l~~Lfek 200 (834)
+++.+|.+ ..-|.... ..+-.++.+++..|+.+.+++|+.+....++.+.
T Consensus 171 ~kvai~~~~d~~~gr~~------------------------~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~ 221 (357)
T TIGR03316 171 KKFAMTWAYSPSYGKPL------------------------SVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEV 221 (357)
T ss_pred CEEEEEeccccccCccc------------------------hHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHH
Confidence 23333321 11121111 1234466778888999999999976434444443
No 101
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.32 E-value=1.4e+02 Score=31.21 Aligned_cols=84 Identities=18% Similarity=0.176 Sum_probs=45.1
Q ss_pred cEEEEEeccccchHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHHHHHh
Q 003284 5 QLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWL 84 (834)
Q Consensus 5 dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~fl~~L 84 (834)
-||||||+|.. .-|+++|.+ |..++..- +. -...|++|-..-..++++ ++.++-+.|
T Consensus 87 ~lIfVvDS~Dr--~Ri~eak~e-L~~~l~~~--------~l----~~~~llv~aNKqD~~~al--------s~~ei~~~L 143 (181)
T KOG0070|consen 87 GLIFVVDSSDR--ERIEEAKEE-LHRMLAEP--------EL----RNAPLLVFANKQDLPGAL--------SAAEITNKL 143 (181)
T ss_pred EEEEEEeCCcH--HHHHHHHHH-HHHHHcCc--------cc----CCceEEEEechhhccccC--------CHHHHHhHh
Confidence 48999999974 456777755 33332222 11 123344554443334444 245555543
Q ss_pred --ccCccCCCCC-c-hhhHHHHHHHHHhhcc
Q 003284 85 --STIPFAGGGF-N-DAAIAEGLSEALMMFS 111 (834)
Q Consensus 85 --d~I~f~GGG~-~-~~AvaEGLa~AL~~f~ 111 (834)
.+|.-.-..+ + ++.-.|||+++|+.+.
T Consensus 144 ~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~ 174 (181)
T KOG0070|consen 144 GLHSLRSRNWHIQSTCAISGEGLYEGLDWLS 174 (181)
T ss_pred hhhccCCCCcEEeeccccccccHHHHHHHHH
Confidence 3444322333 2 4557899999998663
No 102
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=26.78 E-value=2.8e+02 Score=32.21 Aligned_cols=143 Identities=18% Similarity=0.216 Sum_probs=80.3
Q ss_pred CCccEEEEEeccccchHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHHH
Q 003284 2 SEKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFL 81 (834)
Q Consensus 2 ~~~dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~fl 81 (834)
+++=+++++|.++||+..-+.|-+..-..+..++.. +| .+++ |+|=.|+. ..--|.. ++|+
T Consensus 201 s~AV~fc~MDvSGSM~~~~K~lak~ff~~ly~FL~~------~Y--~~Ve---ivFI~H~t-~AkEVdE-------eeFF 261 (371)
T TIGR02877 201 SNAVVIAMMDTSGSMGQFKKYIARSFFFWMVKFLRT------KY--ENVE---ICFISHHT-EAKEVTE-------EEFF 261 (371)
T ss_pred CcEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHh------cc--CceE---EEEEeecC-eeEEcCH-------HHhc
Confidence 345677889999999999988877765555555533 33 2333 45555544 1111222 3333
Q ss_pred HHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhhh
Q 003284 82 HWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQ 161 (834)
Q Consensus 82 ~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~~ 161 (834)
.- -.+|| --|.-||..|+++.+..- +...|+. +|.. -..|+||+..
T Consensus 262 ~~-----~EsGG---T~vSSA~~l~~eII~~rY---pp~~wNI---Y~f~--------------------aSDGDNw~~D 307 (371)
T TIGR02877 262 HK-----GESGG---TYCSSGYKKALEIIDERY---NPARYNI---YAFH--------------------FSDGDNLTSD 307 (371)
T ss_pred cc-----CCCCC---eEehHHHHHHHHHHHhhC---ChhhCee---EEEE--------------------cccCCCccCC
Confidence 21 11233 345566777777775321 2223332 1111 1357788777
Q ss_pred hhccCCCHHHHHHHHhhcCcEEEEecc--CCchhHHHHHHH
Q 003284 162 AESRLSDAETVAKSFVQCSVSLSVICP--KQLPKLTAIYNA 200 (834)
Q Consensus 162 ~~~~l~d~e~lA~~~~e~~I~LSvIsP--rqlp~l~~Lfek 200 (834)
..-| .+.|.++|.-|+.--++=.- ...-.|...|++
T Consensus 308 ~~~c---~~ll~~llp~~~~f~Y~Ei~~~~~~~~l~~~y~~ 345 (371)
T TIGR02877 308 NERA---VKLVRKLLEVCNLFGYGEIMPYGYSNTLKNKFKN 345 (371)
T ss_pred cHHH---HHHHHHHHHhhheEEEEEecCCCCcchHHHHHHh
Confidence 6666 47777788877766655332 344578888875
No 103
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=25.89 E-value=6.5e+02 Score=27.63 Aligned_cols=15 Identities=47% Similarity=0.587 Sum_probs=12.6
Q ss_pred CccEEEEEeccccch
Q 003284 3 EKQLIVAVEGTAAMG 17 (834)
Q Consensus 3 ~~dvVFVID~Tasmg 17 (834)
|..++|.||-|+++|
T Consensus 31 ~~nl~vaIDfT~SNg 45 (254)
T cd01459 31 ESNLIVAIDFTKSNG 45 (254)
T ss_pred eeeEEEEEEeCCCCC
Confidence 357999999999874
No 104
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=24.33 E-value=5.3e+02 Score=30.16 Aligned_cols=35 Identities=17% Similarity=0.113 Sum_probs=29.6
Q ss_pred CHHHHHHHHhhcCcEEEEeccCCchhHHHHHHHhc
Q 003284 168 DAETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAK 202 (834)
Q Consensus 168 d~e~lA~~~~e~~I~LSvIsPrqlp~l~~Lfeka~ 202 (834)
+++.+++++.+.+..|-+-+|..|..+|.|-.+..
T Consensus 132 Nyk~m~~lA~~y~~pl~v~sp~Dln~lk~Ln~~l~ 166 (386)
T PF03599_consen 132 NYKAMAALAKEYGHPLIVSSPIDLNLLKQLNIKLT 166 (386)
T ss_dssp THHHHHHHHHHCT-EEEEE-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEEecccHHHHHHHHHHHH
Confidence 56889999999999999999999999999987764
No 105
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.85 E-value=4.8e+02 Score=33.29 Aligned_cols=192 Identities=16% Similarity=0.206 Sum_probs=96.8
Q ss_pred ccEEEEEeccccchHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCC-------CCcc-------ccee
Q 003284 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHG-------SYCA-------CLVQ 69 (834)
Q Consensus 4 ~dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~-------~~~~-------~lv~ 69 (834)
+-.|||||-+. +.+++-||+-..+.+.+. ++.-. +..++++|+|.|-..= .... .+-+
T Consensus 295 avy~FliDVS~------~a~ksG~L~~~~~slL~~-LD~lp-gd~Rt~igfi~fDs~ihfy~~~~~~~qp~mm~vsdl~d 366 (887)
T KOG1985|consen 295 AVYVFLIDVSI------SAIKSGYLETVARSLLEN-LDALP-GDPRTRIGFITFDSTIHFYSVQGDLNQPQMMIVSDLDD 366 (887)
T ss_pred ceEEEEEEeeh------HhhhhhHHHHHHHHHHHh-hhcCC-CCCcceEEEEEeeceeeEEecCCCcCCCceeeeccccc
Confidence 45799999874 667766777666665442 21111 2368999999885421 0100 0111
Q ss_pred eccCCC-----CHHHHH----HHhccCc--cCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCC
Q 003284 70 RSGWTK-----DVDIFL----HWLSTIP--FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPH 138 (834)
Q Consensus 70 ~~gfTs-----d~~~fl----~~Ld~I~--f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~ 138 (834)
.|-+.- +++++. ..|+.|+ |.--+....|+.-||.+|-.+... ..-|.||+.+--|=+
T Consensus 367 ~flp~pd~lLv~L~~ck~~i~~lL~~lp~~F~~~~~t~~alGpALkaaf~li~~-----------~GGri~vf~s~lPnl 435 (887)
T KOG1985|consen 367 PFLPMPDSLLVPLKECKDLIETLLKTLPEMFQDTRSTGSALGPALKAAFNLIGS-----------TGGRISVFQSTLPNL 435 (887)
T ss_pred cccCCchhheeeHHHHHHHHHHHHHHHHHHHhhccCcccccCHHHHHHHHHHhh-----------cCCeEEEEeccCCCC
Confidence 122222 223322 2333332 333445578888899999988752 224777777766666
Q ss_pred CCCCCcccCCccccccccchhhh----hhccCCC--HHHHHHHHhhcCcEEEEec-cCCchhHHHHHHHhc--CCCCCCC
Q 003284 139 PLPTPVYRPQMQNLDQNENNEAQ----AESRLSD--AETVAKSFVQCSVSLSVIC-PKQLPKLTAIYNAAK--RNPRAAD 209 (834)
Q Consensus 139 ~lp~pv~~p~~~~~~~~e~~~~~----~~~~l~d--~e~lA~~~~e~~I~LSvIs-Prqlp~l~~Lfeka~--~~~~~~~ 209 (834)
+... |+.-|........ -..| .| ...+|-+|.+.+|.+..-. .++.-.|..|-.-++ +.-..-=
T Consensus 436 G~G~------L~~rEdp~~~~s~~~~qlL~~-~t~FYK~~a~~cs~~qI~VDlFl~s~qY~DlAsLs~LskySgG~~y~Y 508 (887)
T KOG1985|consen 436 GAGK------LKPREDPNVRSSDEDSQLLSP-ATDFYKDLALECSKSQICVDLFLFSEQYTDLASLSCLSKYSGGQVYYY 508 (887)
T ss_pred Cccc------cccccccccccchhhhhccCC-CchHHHHHHHHhccCceEEEEEeecccccchhhhhccccccCceeEEc
Confidence 6654 1111211111111 1112 11 2468888899998887654 344333333332221 1211222
Q ss_pred CCCCCCCCCCeEE
Q 003284 210 PPVDNSKNPHFLV 222 (834)
Q Consensus 210 ~~~~~ak~p~hlV 222 (834)
|+-|+. ||+|-.
T Consensus 509 P~f~~s-~p~~~~ 520 (887)
T KOG1985|consen 509 PSFDGS-NPHDVL 520 (887)
T ss_pred cCCCCC-CHHHHH
Confidence 344444 777765
No 106
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=23.83 E-value=1.7e+02 Score=33.36 Aligned_cols=94 Identities=13% Similarity=0.228 Sum_probs=60.7
Q ss_pred CCcccceeeccCCCCHHHHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCC
Q 003284 62 SYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLP 141 (834)
Q Consensus 62 ~~~~~lv~~~gfTsd~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp 141 (834)
.|.+.++-|..--.++.+|-++ .+++++=||...++=+.+|+..+++.++...+ ...+ .+++.+|+|-+
T Consensus 96 ~y~D~iviR~~~~~~~~~~a~~-~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~g----~~l~-glkv~~vGD~~----- 164 (338)
T PRK02255 96 RLVDIIMARVDRHQTVVELAKY-ATVPVINGMSDYNHPTQELGDLFTMIEHLPEG----KKLE-DCKVVFVGDAT----- 164 (338)
T ss_pred HhCcEEEEecCChHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhCCC----CCCC-CCEEEEECCCc-----
Confidence 3556666666556667777766 45777666666678888888888877653210 0011 24555555410
Q ss_pred CCcccCCccccccccchhhhhhccCCCHHHHHHHHhhcCcEEEEeccCCc
Q 003284 142 TPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQL 191 (834)
Q Consensus 142 ~pv~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrql 191 (834)
..+-.++..++..|+.+.+++|+.+
T Consensus 165 -------------------------~v~~Sl~~~~~~~g~~v~~~~P~~~ 189 (338)
T PRK02255 165 -------------------------QVCVSLMFIATKMGMDFVHFGPKGY 189 (338)
T ss_pred -------------------------hHHHHHHHHHHhCCCEEEEECCCcc
Confidence 1345677788889999999999975
No 107
>PRK05325 hypothetical protein; Provisional
Probab=23.48 E-value=3.2e+02 Score=32.02 Aligned_cols=35 Identities=6% Similarity=0.105 Sum_probs=26.4
Q ss_pred CCccEEEEEeccccchHhHHHHHHHHHHHHHHHHh
Q 003284 2 SEKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFC 36 (834)
Q Consensus 2 ~~~dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~ 36 (834)
+++=|+|++|.++||+..-+.|-+.+-..+..++.
T Consensus 221 s~AVmfclMDvSGSM~~~~K~lakrff~lly~fL~ 255 (401)
T PRK05325 221 SQAVMFCLMDVSGSMDEAEKDLAKRFFFLLYLFLR 255 (401)
T ss_pred CcEEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 34567788999999999998887776555655554
No 108
>PRK15301 hypothetical protein; Provisional
Probab=22.16 E-value=10 Score=39.63 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=41.2
Q ss_pred HHHhhcCcEEEEeccCCchhHHHHHHHhcCCCCCCCCCCCCCCCCCeEEEeeccchhhhhhcCC
Q 003284 174 KSFVQCSVSLSVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAALSR 237 (834)
Q Consensus 174 ~~~~e~~I~LSvIsPrqlp~l~~Lfeka~~~~~~~~~~~~~ak~p~hlVLLsg~~l~~r~~~~r 237 (834)
..+.+|.|+|+|+||..- .++-+|..+.++. ----|.-+-.-.|.||.-+|--|+..-+
T Consensus 53 ~~~~~R~v~vsV~Cp~~~-~maL~~qG~a~~~----grf~fg~~G~~~vklsda~lDGkpv~Lg 111 (186)
T PRK15301 53 NKMPEREVNVSVSCPEPQ-QMALFVQGAAGEK----GRFLFGNNGGLAVKVSQMILDGKSYPIG 111 (186)
T ss_pred ccccceeEEEEEECCCCc-eEEEEEecccCCC----CcEEEcCCCcEEEEEhhhEECCcEeeee
Confidence 456899999999999862 2233344343332 1234888999999999988888877654
No 109
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=22.01 E-value=3.1e+02 Score=31.47 Aligned_cols=28 Identities=11% Similarity=0.267 Sum_probs=20.2
Q ss_pred CHHHHHHHHhhcCcEEEEeccCCchhHHHH
Q 003284 168 DAETVAKSFVQCSVSLSVICPKQLPKLTAI 197 (834)
Q Consensus 168 d~e~lA~~~~e~~I~LSvIsPrqlp~l~~L 197 (834)
|.+.+.+++.+.||.+-.+.|.. .+.++
T Consensus 168 d~~el~~lL~~~Gi~v~~~~~d~--~~~~~ 195 (396)
T cd01979 168 VEDQLRRELEQLGIPVVGFLPPR--RYTDL 195 (396)
T ss_pred hHHHHHHHHHHcCCeEEEEeCCC--ChHHh
Confidence 56779999999999997555632 34444
No 110
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.93 E-value=2.1e+02 Score=32.00 Aligned_cols=107 Identities=16% Similarity=0.148 Sum_probs=62.8
Q ss_pred EEEEEeecCCC--CcccceeeccCCCCHHHHHH-HhccCccCC-CCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCc
Q 003284 52 LSLVTFNTHGS--YCACLVQRSGWTKDVDIFLH-WLSTIPFAG-GGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQR 127 (834)
Q Consensus 52 ~gLVvY~d~~~--~~~~lv~~~gfTsd~~~fl~-~Ld~I~f~G-GG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qk 127 (834)
=|++++..-+. ....++....+.+|++=|-- ++-.+. .| -+|-| |.+.|..+.|+.+.. .-.-|
T Consensus 93 ~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~-~~~~~~~P-cTp~av~~ll~~~~i----------~l~Gk 160 (285)
T PRK10792 93 DGILVQLPLPAHIDNVKVLERIHPDKDVDGFHPYNVGRLA-QRIPLLRP-CTPRGIMTLLERYGI----------DTYGL 160 (285)
T ss_pred CEEEEeCCCCCCCCHHHHHhccCcccccCccChhhHhHHh-CCCCCCCC-CCHHHHHHHHHHcCC----------CCCCC
Confidence 38888887654 22335566777777776633 222222 22 12433 366777777766532 12358
Q ss_pred EEEEeecCCCCCCCCCcccCCccccccccchhhhhhccCCCHHHHHHHHhhcCcEEEEeccCCchhHHHHHHHh
Q 003284 128 HCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQLPKLTAIYNAA 201 (834)
Q Consensus 128 hCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrqlp~l~~Lfeka 201 (834)
+|++|..|.=...| ||.+|.+++.++.+ |-++.+.|++...+|
T Consensus 161 ~vvViGrs~iVG~P------------------------------la~lL~~~~atVtv-~hs~T~~l~~~~~~A 203 (285)
T PRK10792 161 NAVVVGASNIVGRP------------------------------MSLELLLAGCTVTV-CHRFTKNLRHHVRNA 203 (285)
T ss_pred EEEEECCCcccHHH------------------------------HHHHHHHCCCeEEE-EECCCCCHHHHHhhC
Confidence 99999877765444 56666677776643 455556666555544
No 111
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.76 E-value=2.8e+02 Score=30.99 Aligned_cols=93 Identities=15% Similarity=0.127 Sum_probs=52.8
Q ss_pred HHHHHHHHhccccccccCCCCccEEEEEEeecCCC--CcccceeeccCCCCHHHHHH-HhccCccCCCCCchhhHHHHHH
Q 003284 28 LEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGS--YCACLVQRSGWTKDVDIFLH-WLSTIPFAGGGFNDAAIAEGLS 104 (834)
Q Consensus 28 I~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~--~~~~lv~~~gfTsd~~~fl~-~Ld~I~f~GGG~~~~AvaEGLa 104 (834)
|..+|+.+|. +..-=|++++..-+. ....++....+.+|++=|-- ++-.+.....+|-|| .++|.-
T Consensus 75 l~~~I~~lN~----------D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~Pc-Tp~avi 143 (287)
T PRK14173 75 LLELIARLNA----------DPEVDGILVQLPLPPHIDFQRVLEAIDPLKDVDGFHPLNVGRLWMGGEALEPC-TPAGVV 143 (287)
T ss_pred HHHHHHHHhC----------CCCCCEEEEeCCCCCCCCHHHHHhccCccccccccChhhhHHHhcCCCCCCCC-CHHHHH
Confidence 4455666654 122348888888765 22334567777888777643 333332222234433 455555
Q ss_pred HHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCC
Q 003284 105 EALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLP 141 (834)
Q Consensus 105 ~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp 141 (834)
+=|+.+.. .-.-|||++|..|+=-..|
T Consensus 144 ~lL~~~~i----------~l~Gk~vvViGrS~iVGkP 170 (287)
T PRK14173 144 RLLKHYGI----------PLAGKEVVVVGRSNIVGKP 170 (287)
T ss_pred HHHHHcCC----------CCCCCEEEEECCCCccHHH
Confidence 55544421 2235899999988877666
No 112
>PLN02527 aspartate carbamoyltransferase
Probab=21.38 E-value=3.5e+02 Score=30.32 Aligned_cols=92 Identities=14% Similarity=0.133 Sum_probs=60.7
Q ss_pred CcccceeeccCCCCHHHHHHHhccCccCCCCCc-hhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCC
Q 003284 63 YCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFN-DAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLP 141 (834)
Q Consensus 63 ~~~~lv~~~gfTsd~~~fl~~Ld~I~f~GGG~~-~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp 141 (834)
|.+.++-|+.--..+.+|.+| ..++++=+|++ .+.=.++|+-.+++.+...+ .+ .+++.+|++.- +.
T Consensus 96 y~D~iviR~~~~~~~~~~a~~-~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g~-------l~-g~kva~vGD~~-~~-- 163 (306)
T PLN02527 96 YSDIIVLRHFESGAARRAAAT-AEIPVINAGDGPGQHPTQALLDVYTIQREIGR-------LD-GIKVGLVGDLA-NG-- 163 (306)
T ss_pred hCcEEEEECCChhHHHHHHHh-CCCCEEECCCCCCCChHHHHHHHHHHHHHhCC-------cC-CCEEEEECCCC-CC--
Confidence 555566676666667777777 46888888874 68888889888888764321 11 24555554321 00
Q ss_pred CCcccCCccccccccchhhhhhccCCCHHHHHHHHhhc-CcEEEEeccCCc
Q 003284 142 TPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQC-SVSLSVICPKQL 191 (834)
Q Consensus 142 ~pv~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~-~I~LSvIsPrql 191 (834)
..+-.++..+... |+.|.++||+.+
T Consensus 164 -------------------------rv~~Sl~~~~~~~~g~~v~~~~P~~~ 189 (306)
T PLN02527 164 -------------------------RTVRSLAYLLAKYEDVKIYFVAPDVV 189 (306)
T ss_pred -------------------------hhHHHHHHHHHhcCCCEEEEECCCcc
Confidence 1345667777776 999999999986
No 113
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=21.26 E-value=3.2e+02 Score=30.99 Aligned_cols=92 Identities=11% Similarity=0.159 Sum_probs=59.2
Q ss_pred CcccceeeccCCCCHHHHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCC
Q 003284 63 YCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPT 142 (834)
Q Consensus 63 ~~~~lv~~~gfTsd~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~ 142 (834)
|.+.+|-|+.-...+.+|-+|. .|+.+=++...+.=+.+|+..+++.+.... . .+ .+++.+|++-. +
T Consensus 101 y~D~iv~R~~~~~~~~~~a~~~-~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~-~-----l~-gl~ia~vGD~~-~---- 167 (334)
T PRK01713 101 MYDAIEYRGFKQSIVNELAEYA-GVPVFNGLTDEFHPTQMLADVLTMIENCDK-P-----LS-EISYVYIGDAR-N---- 167 (334)
T ss_pred hCCEEEEEcCchHHHHHHHHhC-CCCEEECCCCCCChHHHHHHHHHHHHHcCC-C-----cC-CcEEEEECCCc-c----
Confidence 5556666766666677777775 466655555667778888888888764220 0 11 23444444321 1
Q ss_pred CcccCCccccccccchhhhhhccCCCHHHHHHHHhhcCcEEEEeccCCc
Q 003284 143 PVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQL 191 (834)
Q Consensus 143 pv~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrql 191 (834)
..+-.++.+++..|+.|.+++|+.+
T Consensus 168 ------------------------~v~~Sl~~~~~~~g~~v~~~~P~~~ 192 (334)
T PRK01713 168 ------------------------NMGNSLLLIGAKLGMDVRICAPKAL 192 (334)
T ss_pred ------------------------CHHHHHHHHHHHcCCEEEEECCchh
Confidence 1345567788888999999999986
No 114
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=20.59 E-value=3.8e+02 Score=31.35 Aligned_cols=99 Identities=7% Similarity=-0.007 Sum_probs=55.8
Q ss_pred CCcccceeeccC-----CCCHHHHHHHhc---------cC-c-cCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccC
Q 003284 62 SYCACLVQRSGW-----TKDVDIFLHWLS---------TI-P-FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDG 125 (834)
Q Consensus 62 ~~~~~lv~~~gf-----Tsd~~~fl~~Ld---------~I-~-f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~ 125 (834)
.|.+.+|-|+++ ...++++-.+.+ .+ . ..+|| ..+.=..+|+-.+++.+.... ....
T Consensus 113 ~y~D~IviR~~~~~g~~~~~~~ela~~~~~~~~~~~~~~~pPVINa~~-~~~HPtQaLaDl~TI~E~~G~------~~~l 185 (395)
T PRK07200 113 FMADVIGIRDDMYIGKGNAYMREVGAAVDDGYKQGVLPQRPTLVNLQC-DIDHPTQSMADLLHLIEHFGG------LENL 185 (395)
T ss_pred HhCCEEEEecCcccccccHHHHHHHHHhhhhcccccccCCCeEEECCC-CCCCcHHHHHHHHHHHHHhCC------Cccc
Confidence 466778888643 223455556552 23 2 44443 467778888888888765321 0111
Q ss_pred C-cEEEEeec-CCCCCCCCCcccCCccccccccchhhhhhccCCCHHHHHHHHhhcCcEEEEeccCCc
Q 003284 126 Q-RHCILVAA-SNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQL 191 (834)
Q Consensus 126 q-khCILIa~-SpP~~lp~pv~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrql 191 (834)
. +++.+|.+ ...|.... ..+-.++.++...|+.+.+++|+.+
T Consensus 186 ~g~kVaivg~~~~~~g~~~------------------------~Va~Sl~~~~~~lG~~v~~~~P~~~ 229 (395)
T PRK07200 186 KGKKIAMTWAYSPSYGKPL------------------------SVPQGIIGLMTRFGMDVTLAHPEGY 229 (395)
T ss_pred CCCEEEEEeccccccCCcc------------------------hHHHHHHHHHHHcCCEEEEECCCcc
Confidence 2 23333332 22222221 1234567777888999999999965
No 115
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=20.33 E-value=1.2e+02 Score=28.16 Aligned_cols=33 Identities=24% Similarity=0.227 Sum_probs=23.6
Q ss_pred CCCHHHHHHHhccCccCCCCC-------c-hhhHHHHHHHH
Q 003284 74 TKDVDIFLHWLSTIPFAGGGF-------N-DAAIAEGLSEA 106 (834)
Q Consensus 74 Tsd~~~fl~~Ld~I~f~GGG~-------~-~~AvaEGLa~A 106 (834)
--++++|.+-|++|.+..++. + +.+|+.+|.+.
T Consensus 54 G~~~~~ii~~L~gi~~~~~~~~~~~~~~S~~D~Ia~~L~~~ 94 (95)
T PF12637_consen 54 GVPPEEIIDQLRGIRCGPSGTVGGSRVTSCPDAIAKALEEH 94 (95)
T ss_pred CCCHHHHHHHhcCCCCCCCCccCCCccCcHHHHHHHHHHHh
Confidence 345788889999999888876 4 45566666554
No 116
>PHA02030 hypothetical protein
Probab=20.31 E-value=1.3e+02 Score=33.77 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=33.4
Q ss_pred CccEEEEEEeecCCCCc-------c-----------c---ceeeccCC---CCHHHHHHHhccCccCCCCCchhhHHHHH
Q 003284 48 SNVELSLVTFNTHGSYC-------A-----------C---LVQRSGWT---KDVDIFLHWLSTIPFAGGGFNDAAIAEGL 103 (834)
Q Consensus 48 ~~~~~gLVvY~d~~~~~-------~-----------~---lv~~~gfT---sd~~~fl~~Ld~I~f~GGG~~~~AvaEGL 103 (834)
..+|+++.+|++..+.. + - +++.+..| ++=..|...+|+... ||. .-.++|-|
T Consensus 70 ~~vrLgf~L~G~~~p~~g~~~s~p~dlf~~~~~~g~~~P~~i~t~~mtlsnnEKs~~kk~Fd~Mn~-~G~--akh~ae~L 146 (336)
T PHA02030 70 PNVRLGFALWGDVNPQAGNPQSRPDDLFHTYEADGNGKPGLIRTFEMTLGNNEKSKTKLAFDKMNW-SGQ--HKHFAQML 146 (336)
T ss_pred cceeEEEEEecCCCccccccccCccccccccccCCCcceeEEEeeeecccccchhhHHHHHHHhcc-CCc--hhhHHHHc
Confidence 36899999999943111 1 0 12233333 233567777777776 333 34577888
Q ss_pred HHHH
Q 003284 104 SEAL 107 (834)
Q Consensus 104 a~AL 107 (834)
..|.
T Consensus 147 G~aF 150 (336)
T PHA02030 147 GQAF 150 (336)
T ss_pred CCce
Confidence 7776
No 117
>PF12257 DUF3608: Protein of unknown function (DUF3608); InterPro: IPR022046 This domain family is found in eukaryotes, and is approximately 280 amino acids in length. The family is found in association with PF00610 from PFAM.
Probab=20.25 E-value=7.3e+02 Score=27.84 Aligned_cols=71 Identities=13% Similarity=0.243 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhhhhhccCCCHHHHHHH
Q 003284 96 DAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKS 175 (834)
Q Consensus 96 ~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~ 175 (834)
...+.|||.-|+..|+..-- + ......-.++|+|++.+-+ |. -+ .|. ....-+.
T Consensus 202 ~gNiLEaINlaln~~~~~~i-d--Rdl~rTG~~iivITpG~Gv------f~--------Vd-~~l--------l~~T~~r 255 (281)
T PF12257_consen 202 KGNILEAINLALNQFDKHYI-D--RDLRRTGQSIIVITPGTGV------FE--------VD-YDL--------LRLTTQR 255 (281)
T ss_pred cccHHHHHHHHhhhcccccc-c--CcccccCceEEEEcCCCce------EE--------EC-HHH--------HHHHHHH
Confidence 46799999999999975321 1 1222345678888754432 21 00 011 1233456
Q ss_pred HhhcCcEEEEeccCCch
Q 003284 176 FVQCSVSLSVICPKQLP 192 (834)
Q Consensus 176 ~~e~~I~LSvIsPrqlp 192 (834)
|-..||.+.+||..+-|
T Consensus 256 l~~~gi~~DlIcL~~~P 272 (281)
T PF12257_consen 256 LLDNGIGIDLICLSKPP 272 (281)
T ss_pred HHhcCccEEEEEcCCCC
Confidence 77889999999998855
No 118
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=20.10 E-value=2.2e+02 Score=32.34 Aligned_cols=93 Identities=12% Similarity=0.180 Sum_probs=59.0
Q ss_pred CcccceeeccCCCCHHHHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCC
Q 003284 63 YCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPT 142 (834)
Q Consensus 63 ~~~~lv~~~gfTsd~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~ 142 (834)
|.+.++-|..-...+.+|-+|. +|+.+=+|...+.=..+|+..+++.+..... ..+ .+++..|++-. +
T Consensus 100 y~D~iviR~~~~~~~~~~a~~~-~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~-----~l~-gl~va~vGD~~-~---- 167 (334)
T PRK12562 100 MYDGIQYRGHGQEVVETLAEYA-GVPVWNGLTNEFHPTQLLADLLTMQEHLPGK-----AFN-EMTLVYAGDAR-N---- 167 (334)
T ss_pred hCCEEEEECCchHHHHHHHHhC-CCCEEECCCCCCChHHHHHHHHHHHHHhCCC-----CcC-CcEEEEECCCC-C----
Confidence 5555666766566677777775 4666655556688888999999887653100 011 23444444321 1
Q ss_pred CcccCCccccccccchhhhhhccCCCHHHHHHHHhhcCcEEEEeccCCc
Q 003284 143 PVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQL 191 (834)
Q Consensus 143 pv~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrql 191 (834)
..+-.++..++..|+.|.+++|+.+
T Consensus 168 ------------------------~v~~S~~~~~~~~G~~v~~~~P~~~ 192 (334)
T PRK12562 168 ------------------------NMGNSMLEAAALTGLDLRLVAPQAC 192 (334)
T ss_pred ------------------------CHHHHHHHHHHHcCCEEEEECCccc
Confidence 1245567778888999999999985
Done!