Query 003284
Match_columns 834
No_of_seqs 330 out of 1362
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 19:55:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003284.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003284hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iue_A Pactolus I-domain; memb 99.6 7.8E-15 2.7E-19 150.5 16.3 166 4-197 4-182 (212)
2 3vi3_B Integrin beta-1; beta p 99.4 1.4E-12 4.6E-17 146.3 16.5 173 4-199 123-330 (454)
3 3v4v_B Integrin beta-7; cell a 99.4 2.7E-12 9.4E-17 145.2 16.9 173 4-198 133-341 (503)
4 3t3p_B Integrin beta-3; integr 99.4 4.6E-12 1.6E-16 142.8 17.6 174 4-199 112-323 (472)
5 3fcs_B Integrin beta-3; beta p 99.4 3.6E-12 1.2E-16 150.3 16.8 174 4-199 112-323 (690)
6 3k6s_B Integrin beta-2; cell r 99.3 1.9E-12 6.4E-17 152.4 11.4 174 4-200 105-314 (687)
7 1ijb_A VON willebrand factor; 99.0 2E-09 6.9E-14 107.2 14.9 149 3-199 13-168 (202)
8 2xgg_A Microneme protein 2; A/ 99.0 2.4E-09 8.1E-14 104.5 12.9 139 3-190 17-161 (178)
9 1v7p_C Integrin alpha-2; snake 99.0 4E-09 1.4E-13 104.5 13.9 137 3-188 6-145 (200)
10 1atz_A VON willebrand factor; 99.0 1.1E-08 3.6E-13 100.3 16.5 146 3-198 5-156 (189)
11 3n2n_F Anthrax toxin receptor 98.9 1.4E-09 4.9E-14 105.2 8.4 137 4-189 8-146 (185)
12 1mf7_A Integrin alpha M; cell 98.9 5E-09 1.7E-13 102.9 10.4 138 3-190 5-146 (194)
13 3ibs_A Conserved hypothetical 98.8 4.3E-08 1.5E-12 97.4 15.2 132 3-189 11-148 (218)
14 2b2x_A Integrin alpha-1; compu 98.8 2.8E-08 9.5E-13 100.1 13.7 140 3-189 22-162 (223)
15 1pt6_A Integrin alpha-1; cell 98.8 4.6E-08 1.6E-12 97.7 13.9 140 3-189 7-147 (213)
16 1shu_X Anthrax toxin receptor 98.8 2.1E-08 7.2E-13 96.7 11.0 137 3-190 6-144 (182)
17 1q0p_A Complement factor B; VO 98.8 8E-08 2.7E-12 95.4 15.1 123 3-138 15-140 (223)
18 1n3y_A Integrin alpha-X; alpha 98.7 2.7E-08 9.1E-13 97.5 9.6 138 3-190 9-150 (198)
19 4hqo_A Sporozoite surface prot 98.7 4.9E-08 1.7E-12 101.8 11.9 139 3-190 18-164 (266)
20 4b4t_W RPN10, 26S proteasome r 98.7 2.1E-07 7.3E-12 98.6 16.6 160 6-225 6-175 (268)
21 4hqf_A Thrombospondin-related 98.6 1.3E-07 4.6E-12 98.8 11.3 138 3-190 21-167 (281)
22 3zqk_A VON willebrand factor; 98.6 2.4E-07 8.1E-12 92.0 12.0 114 3-138 21-138 (199)
23 3hrz_D Complement factor B; se 98.6 3.8E-07 1.3E-11 106.9 14.2 119 4-138 244-368 (741)
24 2x5n_A SPRPN10, 26S proteasome 98.5 2E-06 6.8E-11 86.4 17.1 159 4-227 3-173 (192)
25 2odp_A Complement C2; C3/C5 co 98.5 3.9E-07 1.3E-11 102.3 13.2 121 3-138 9-137 (509)
26 1rrk_A Complement factor B; BB 98.5 4.8E-07 1.6E-11 101.1 13.8 122 4-138 2-126 (497)
27 1mjn_A Integrin alpha-L; rossm 98.5 6.2E-07 2.1E-11 87.6 11.9 111 3-138 2-116 (179)
28 3k6s_A Integrin alpha-X; cell 98.3 7.5E-07 2.5E-11 110.3 9.4 138 4-191 131-272 (1095)
29 2x31_A Magnesium-chelatase 60 98.3 1.6E-06 5.4E-11 84.5 9.0 109 3-138 5-114 (189)
30 4fx5_A VON willebrand factor t 98.1 2.4E-05 8.1E-10 88.6 15.3 105 3-138 77-192 (464)
31 1jey_B KU80; double-strand DNA 97.9 0.0001 3.6E-09 85.1 16.2 137 4-186 8-165 (565)
32 3rag_A Uncharacterized protein 97.9 2.3E-05 7.9E-10 81.9 9.1 93 3-111 134-226 (242)
33 1jey_A KU70; double-strand DNA 97.7 0.00024 8.1E-09 83.0 14.5 148 2-189 33-206 (609)
34 2ww8_A RRGA, cell WALL surface 97.0 0.0022 7.5E-08 78.1 12.0 118 4-138 225-391 (893)
35 1yvr_A RO autoantigen, 60-kDa 95.1 0.088 3E-06 60.3 11.3 98 3-137 368-472 (538)
36 3iot_A Maltose-binding protein 95.0 0.0047 1.6E-07 68.0 0.5 18 170-187 21-39 (449)
37 3iot_A Maltose-binding protein 94.5 0.0077 2.6E-07 66.3 0.5 11 27-37 19-29 (449)
38 1pcx_A Protein transport prote 92.6 1.3 4.4E-05 53.5 15.2 107 81-205 288-407 (810)
39 3eh1_A Protein transport prote 92.5 1.8 6.2E-05 51.9 16.3 175 6-205 163-371 (751)
40 2nut_A Protein transport prote 92.3 0.66 2.2E-05 55.7 12.2 110 82-205 246-375 (769)
41 1m2v_B SEC24, protein transpor 92.3 1 3.4E-05 55.3 13.8 109 79-205 402-523 (926)
42 1m2o_A SEC23, protein transpor 90.0 2 6.8E-05 51.6 13.1 110 82-205 240-369 (768)
43 2nvo_A RO sixty-related protei 88.0 2.1 7.2E-05 49.1 11.1 129 3-190 362-499 (535)
44 3eh2_A Protein transport prote 85.9 9.4 0.00032 45.9 15.4 181 6-205 176-392 (766)
45 3efo_B SEC24 related gene fami 84.0 11 0.00037 45.3 14.7 181 6-205 180-396 (770)
46 1yco_A Branched-chain phosphot 32.7 33 0.0011 36.3 4.2 92 5-110 112-206 (279)
47 4ex8_A ALNA; alpha/beta/alpha- 27.9 44 0.0015 36.1 4.2 35 28-75 174-208 (316)
48 3rag_A Uncharacterized protein 25.5 92 0.0032 32.4 6.0 37 168-204 26-70 (242)
49 2i9n_A MHB4A peptide; beta-hai 23.0 66 0.0023 23.1 2.9 24 84-107 6-30 (33)
50 3csu_A Protein (aspartate carb 22.7 2.7E+02 0.0093 29.8 9.2 91 65-191 100-192 (310)
51 1pvv_A Otcase, ornithine carba 22.0 92 0.0032 33.5 5.4 90 63-191 101-190 (315)
No 1
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=99.61 E-value=7.8e-15 Score=150.48 Aligned_cols=166 Identities=8% Similarity=0.098 Sum_probs=124.6
Q ss_pred ccEEEEEeccccchHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHHHHH
Q 003284 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHW 83 (834)
Q Consensus 4 ~dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~fl~~ 83 (834)
.||+||||.|+||++|++.+|+. +..+++.+.. + ..++|+|++.|+|+ . +...+.||+|.+.|.++
T Consensus 4 vDl~fl~D~S~SM~~di~~lk~~-~~~l~~~l~~--~------~~~~r~Gfg~f~Dk----~-~~~~l~lT~d~~~F~~~ 69 (212)
T 2iue_A 4 VDLYFLMGLSGSAQGHLSNVQTL-GSDLLKALNE--I------SRSGRIGFGSIVNM----T-FQHILKLTADSSQFQRE 69 (212)
T ss_dssp EEEEEEEECCGGGTTTHHHHHHH-HHHHHHHHHH--H------CSCEEEEEEEESSS----C-EEEEEEEESCHHHHHHH
T ss_pred eEEEEEEeCCCcchhHHHHHHHH-HHHHHHHHHh--h------CcCceEEEEEEEcC----c-ceecCCcCCCHHHHHHH
Confidence 69999999999999999999977 7888777753 1 13689999999998 2 35678999999999999
Q ss_pred hccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCC------------cccCCccc
Q 003284 84 LSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTP------------VYRPQMQN 151 (834)
Q Consensus 84 Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~p------------v~~p~~~~ 151 (834)
++++..+||++.||+..+||..|+.|.+.. .|....|.+||++|++||..... |++- .+
T Consensus 70 v~~~~vsg~~D~PE~g~dal~qa~~c~~~i-------~Wr~a~rllvl~TDa~~H~~gDg~l~gi~~pnd~~chl~--~g 140 (212)
T 2iue_A 70 LRKQLVSGKLATPKGQLDAVVQVAICLGEI-------GWRNGTRFLVLVTDNDFHLAKDKTLGTRQNTSDGRCHLD--DG 140 (212)
T ss_dssp HHTCCCCCCSSSSBCHHHHHHHHHHCHHHH-------TCCSSEEEEEEECSSCBCCTTGGGGGTCCSCCCSSCCBS--SS
T ss_pred HhhccccCCCCCCchHHHHHHHHHHhhhhc-------ccCCccEEEEEECcCCccccCCccccccccCCccccccC--CC
Confidence 999999999999999999999999875411 12335789999999999987542 2211 11
Q ss_pred cccccchhhhhhccCCCHHHHHHHHhhcCcEEEEeccCC-chhHHHH
Q 003284 152 LDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQ-LPKLTAI 197 (834)
Q Consensus 152 ~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrq-lp~l~~L 197 (834)
+|. . .......+++++.+.+.+++|.+....... ...+++|
T Consensus 141 ~y~-~----s~~~Dyps~~q~~~~l~~~~i~~ifavt~~~~~~Y~~l 182 (212)
T 2iue_A 141 MYR-S----RGEPDYQSVVQLASKLAENNIQPIFVVPSRMVKTYEKL 182 (212)
T ss_dssp BBG-G----GGSSCCCCHHHHHHHHHHHTCEEEEEEEHHHHHHHHHH
T ss_pred eec-c----CcccCCCCHHHHHHHHHhcCCcEEEEEccchhHHHHHH
Confidence 111 1 111123578999999999999975555543 3334444
No 2
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=99.43 E-value=1.4e-12 Score=146.31 Aligned_cols=173 Identities=8% Similarity=0.030 Sum_probs=128.5
Q ss_pred ccEEEEEeccccchHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCC---------------------C
Q 003284 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHG---------------------S 62 (834)
Q Consensus 4 ~dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~---------------------~ 62 (834)
.||+|++|.|++|+++++.||+. ...+++.+..- ..++|+|++.|.|++ |
T Consensus 123 VDLyyLmDlS~SM~ddl~~lk~l-g~~L~~~l~~~--------t~~~riGfGsFvDK~v~P~~~t~p~~~~nPC~~~~~c 193 (454)
T 3vi3_B 123 IDLYYLMDLSYSMKDDLENVKSL-GTDLMNEMRRI--------TSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQNC 193 (454)
T ss_dssp EEEEEEEECSGGGHHHHHHHTTH-HHHHHHHHTTT--------CSSEEEEEEEECCCSSTTTSCCSTTTTTCCSCSSSCC
T ss_pred eeEEEEecCCcchhhHHHHHHHH-HHHHHHHHHhc--------CCCeEEEEEEEeccccCCcccCChHHhcCCCcCccCC
Confidence 69999999999999999999987 68888888542 246899999999973 2
Q ss_pred Cccccee-eccCCCCHHHHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCC
Q 003284 63 YCACLVQ-RSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLP 141 (834)
Q Consensus 63 ~~~~lv~-~~gfTsd~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp 141 (834)
.+.|..+ .+.+|+|..+|..+++++..+||+|.||+..|||..|+.|-+.. .|....|.+||++|+++|...
T Consensus 194 ~~~f~fr~~l~LT~d~~~F~~~V~~~~isGn~D~PEgg~DAl~Qaavc~~~i-------gWR~a~rllV~~TDa~fH~ag 266 (454)
T 3vi3_B 194 TTPFSYKNVLSLTNKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLI-------GWRNVTRLLVFSTDAGFHFAG 266 (454)
T ss_dssp CCCCSEEEEEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHH-------TCCSSEEEEEEEESSCBCCTT
T ss_pred CCCcceeeeeecCCCHHHHHHHHhhccccCCCcCCchhHHHHHHHhcccccc-------CCccceEEEEEECCCCcCcCC
Confidence 2344444 57889999999999999999999999999999999988764311 133457888999999999766
Q ss_pred C------------CcccCCccccccccchhhhhhccCCCHHHHHHHHhhcCcE-EEEeccCCchhHHHHHH
Q 003284 142 T------------PVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVS-LSVICPKQLPKLTAIYN 199 (834)
Q Consensus 142 ~------------pv~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~-LSvIsPrqlp~l~~Lfe 199 (834)
. .|++- +++| -.+..+ ..-...+|++.+.|++|. |++|.-+....|++|-+
T Consensus 267 DgkL~GIv~PNDg~CHL~--~~~Y-t~s~~~----DYPSv~ql~~~l~e~nI~~IFAVt~~~~~~Y~~L~~ 330 (454)
T 3vi3_B 267 DGKLGGIVLPNDGQCHLE--NNMY-TMSHYY----DYPSIAHLVQKLSENNIQTIFAVTEEFQPVYKELKN 330 (454)
T ss_dssp TTGGGTCCSCCCCCCCEE--TTEE-CCTTTS----CCCCHHHHHHHHHHTTEEEEEEEEGGGHHHHHHHHH
T ss_pred CccccceecCCCCccEeC--CCcc-cccccC----CCCCHHHHHHHHHhcCCcEEEEEcCccchHHHHHHH
Confidence 5 23221 1222 111111 123579999999999999 66776666655555443
No 3
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=99.40 E-value=2.7e-12 Score=145.25 Aligned_cols=173 Identities=10% Similarity=0.054 Sum_probs=127.8
Q ss_pred ccEEEEEeccccchHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCC----------------------
Q 003284 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHG---------------------- 61 (834)
Q Consensus 4 ~dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~---------------------- 61 (834)
.||+|+||.|.+|++|++.||+. ...+++.+..- ..++|||++.|+|++
T Consensus 133 VDLyyLmDlS~SM~ddl~~lk~l-g~~L~~~l~~~--------t~~~RiGfGsFvDK~v~P~~~~~p~~l~~PC~~~~~~ 203 (503)
T 3v4v_B 133 VDLYYLMDLSYSMKDDLERVRQL-GHALLVRLQEV--------THSVRIGFGSFVDKTVLPFVSTVPSKLRHPCPTRLER 203 (503)
T ss_dssp EEEEEEEECSGGGHHHHHHHHHS-SHHHHHHHTTT--------CSCEEEEEEEECCCSSTTTSCCCHHHHHCCSSCSSSC
T ss_pred eeEEEEEecCcchhhHHHHHHHH-HHHHHHHHHhh--------CcCcEEeeeeecccccCCcccCCHHHhcCCCcCCCCC
Confidence 69999999999999999999977 68888888541 246899999999963
Q ss_pred CCccccee-eccCCCCHHHHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCC
Q 003284 62 SYCACLVQ-RSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPL 140 (834)
Q Consensus 62 ~~~~~lv~-~~gfTsd~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~l 140 (834)
|.+.|..+ ...+|+|.++|..+++++..+||+|.||+..+||..|+.|-+.. .|....|.+||++|+++|..
T Consensus 204 c~p~f~fr~~l~LT~d~~~F~~~V~~~~iSGnlD~PEggfDAlmQaavC~~~I-------gWR~a~rllV~~TDA~fH~a 276 (503)
T 3v4v_B 204 CQSPFSFHHVLSLTGDAQAFEREVGRQSVSGNLDSPEGGFDAILQAALCQEQI-------GWRNVSRLLVFTSDDTFHTA 276 (503)
T ss_dssp CCCCCSEEEEEEEESCSHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHH-------TCCSSEEEEEEEESSCBCCT
T ss_pred CCCCcceEEEEEecCCHHHHHHHHhhcCccCCCCCCchHHHHHHHHhhccccc-------CCCcceEEEEEECCCCcCcC
Confidence 22344444 46789999999999999999999999999999999888654211 12335688999999999975
Q ss_pred CC------------CcccCCccccccccchhhhhhccCCCHHHHHHHHhhcCcE-EEEeccCCchhHHHHH
Q 003284 141 PT------------PVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVS-LSVICPKQLPKLTAIY 198 (834)
Q Consensus 141 p~------------pv~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~-LSvIsPrqlp~l~~Lf 198 (834)
.. .|++-. +++|. . ......-...+|++.+.|++|. |+.|.-+....|++|-
T Consensus 277 gDgkLaGIv~pNDg~CHL~~-~~~Yt-~----s~~~DYPSv~ql~~kL~ennI~~IFAVt~~~~~~Y~~L~ 341 (503)
T 3v4v_B 277 GDGKLGGIFMPSDGHCHLDS-NGLYS-R----STEFDYPSVGQVAQALSAANIQPIFAVTSAALPVYQELS 341 (503)
T ss_dssp TGGGTTTCCSCCCSSCCBCT-TSBBG-G----GGGSCCCCHHHHHHHHHHHTEEEEEEECSSSHHHHHHHH
T ss_pred CCccccceecCCCCCeEECC-CCccc-c----ccccCCCCHHHHHHHHHhcCCeEEEEEcccchhHHHHHH
Confidence 54 232210 12221 1 1122234679999999999998 6667666666555553
No 4
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=99.39 E-value=4.6e-12 Score=142.84 Aligned_cols=174 Identities=9% Similarity=-0.023 Sum_probs=127.0
Q ss_pred ccEEEEEeccccchHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCC---------------------
Q 003284 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGS--------------------- 62 (834)
Q Consensus 4 ~dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~--------------------- 62 (834)
.||+|++|.|.+|++|++.||+. ...+++.+..- ..++|||++.|+|++-
T Consensus 112 vDLy~LmDlS~SM~ddl~~lk~l-g~~L~~~l~~~--------t~~~riGfgsFvDk~v~P~~~~~p~~~l~nPc~~~~~ 182 (472)
T 3t3p_B 112 VDIYYLMDLSYSMKDDLWSIQNL-GTKLATQMRKL--------TSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKT 182 (472)
T ss_dssp EEEEEEEECSGGGHHHHHHTTTH-HHHHHHHHTTT--------CSCEEEEEEEECCCSSTTTSCCCSHHHHHCTTTTTTS
T ss_pred ceEEEEEccCcchHHHHHHHHHH-HHHHHHHHHhc--------CcCcEEEEEEeeccccCccccCChhhhhcCCCccccc
Confidence 69999999999999999999987 78888888641 2468999999999632
Q ss_pred --Cccccee-eccCCCCHHHHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCc-cCCcEEEEeecCCCC
Q 003284 63 --YCACLVQ-RSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNV-DGQRHCILVAASNPH 138 (834)
Q Consensus 63 --~~~~lv~-~~gfTsd~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~-~~qkhCILIa~SpP~ 138 (834)
.+.|..+ .+.+|+|.++|..+++++..+||+|.||+..+||..|+.|-+.. .|. +..|.+||++|+++|
T Consensus 183 ~c~p~f~fr~~l~LT~d~~~F~~~V~~~~iSGn~D~PEgg~dAl~qaavC~~~i-------gWR~~a~rllV~~TDa~~H 255 (472)
T 3t3p_B 183 TCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKI-------GWRNDASHLLVFTTDAKTH 255 (472)
T ss_dssp CCCCCCSEEEEEEEESCHHHHHHHHHHCCCCCCSSSSBCHHHHHHHHHHCHHHH-------TCCSSSEEEEEEEESSCBC
T ss_pred CCCCCcceeEeeccCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhcchhhc-------CCCCCceEEEEEECCCCcC
Confidence 1233333 46789999999999999999999999999999999998654211 122 357888999999999
Q ss_pred CCCC------------CcccCCccccccccchhhhhhccCCCHHHHHHHHhhcCcE-EEEeccCCchhHHHHHH
Q 003284 139 PLPT------------PVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVS-LSVICPKQLPKLTAIYN 199 (834)
Q Consensus 139 ~lp~------------pv~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~-LSvIsPrqlp~l~~Lfe 199 (834)
.... .|++-. +++| .. ......-...+|++.+.|++|. |+.|.-+....|++|-+
T Consensus 256 ~agDgkL~GIv~pnDg~CHL~~-~~~Y-~~----s~~~DYPSv~ql~~~l~e~nI~~IFAVt~~~~~~Y~~L~~ 323 (472)
T 3t3p_B 256 IALDGRLAGIVQPNDGQCHVGS-DNHY-SA----STTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSE 323 (472)
T ss_dssp CTTGGGGGTCCCCCCCCCCBCT-TCBB-TT----TTTSCCCCHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHH
T ss_pred cCCCccccceecCCCCceEECC-CCcc-cc----cccCCCCCHHHHHHHHHhcCccEEEEEeccchhHHHHHHH
Confidence 7554 232210 1111 11 1112224679999999999999 56666655565555543
No 5
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=99.38 E-value=3.6e-12 Score=150.28 Aligned_cols=174 Identities=10% Similarity=-0.010 Sum_probs=124.1
Q ss_pred ccEEEEEeccccchHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCc-------------------
Q 003284 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYC------------------- 64 (834)
Q Consensus 4 ~dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~------------------- 64 (834)
.||+|+||.|++|++||+.||+. +..+++.+.. + ..++|||++.|+|+...|
T Consensus 112 vDly~LmD~S~SM~ddi~~lk~l-~~~l~~~l~~--~------t~~~r~Gfgsf~Dk~~~P~~~~~p~~~~~~pc~~~~~ 182 (690)
T 3fcs_B 112 VDIYYLMDLSYSMKDDLWSIQNL-GTKLATQMRK--L------TSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKT 182 (690)
T ss_dssp EEEEEEEECSGGGHHHHHHTTTT-THHHHHHHHH--H------CSCEEEEEEEECCCSSTTTSCCCSTTTTTCTTSSSSS
T ss_pred ccEEEEecCCcchHHHHHHHHHH-HHHHHHHHHh--h------CcCceEEeEEeeccccCCccccChhhhccCCCcCCCC
Confidence 69999999999999999999976 6778877754 1 246899999999966322
Q ss_pred ----cccee-eccCCCCHHHHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCc-cCCcEEEEeecCCCC
Q 003284 65 ----ACLVQ-RSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNV-DGQRHCILVAASNPH 138 (834)
Q Consensus 65 ----~~lv~-~~gfTsd~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~-~~qkhCILIa~SpP~ 138 (834)
.|..+ .+.+|+|..+|..+|+++.++||+|.||+..+||..|+.+.+.. .|. ...|.+||++|+++|
T Consensus 183 ~c~~~f~f~~~l~lt~~~~~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~~~i-------gWr~~a~rllv~~TDa~~H 255 (690)
T 3fcs_B 183 TCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKI-------GWRNDASHLLVFTTDAKTH 255 (690)
T ss_dssp CCCCCCSEEEEEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHH-------TCCSSSEEEEEEEESSCBC
T ss_pred CCCCCccceeecccCCCHHHHHHHhhceeccCCCCCCchHHHHHHHHhhccccc-------CCCCCceEEEEEECCCccc
Confidence 12222 36779999999999999999999999999999999999665411 122 357888999999999
Q ss_pred CCCC------------CcccCCccccccccchhhhhhccCCCHHHHHHHHhhcCcEEEEeccCC-chhHHHHHH
Q 003284 139 PLPT------------PVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQ-LPKLTAIYN 199 (834)
Q Consensus 139 ~lp~------------pv~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrq-lp~l~~Lfe 199 (834)
-... .|++-. +++|. . ......-+..+|++.|.|++|.+-++..+. +..|++|.+
T Consensus 256 ~agDg~l~gi~~pnd~~chl~~-~~~y~-~----s~~~DypSi~ql~~~l~~~~i~~ifavt~~~~~~y~~l~~ 323 (690)
T 3fcs_B 256 IALDGRLAGIVQPNDGQCHVGS-DNHYS-A----STTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSE 323 (690)
T ss_dssp CTTGGGGGTCCSCCCCCCCBCT-TCBBG-G----GGTSCCCCHHHHHHHHHHTTCEEEEEEEGGGHHHHHHHHH
T ss_pred cCCCccccceecCCCcceeecC-CCccc-c----ccccCCCCHHHHHHHHHHcCCeEEEEEeCCchhhHHHHHh
Confidence 5433 222110 11111 1 111122358999999999999966555444 455555544
No 6
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=99.34 E-value=1.9e-12 Score=152.43 Aligned_cols=174 Identities=7% Similarity=-0.003 Sum_probs=124.6
Q ss_pred ccEEEEEeccccchHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCC--------------------
Q 003284 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSY-------------------- 63 (834)
Q Consensus 4 ~dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~-------------------- 63 (834)
.||+|+||.|.+|++||+.||+. +..+++.+.. + ..++|||++.|+|+...
T Consensus 105 vDly~LmD~S~SM~ddi~~lk~l-~~~l~~~l~~--~------t~~~r~GfgsFvDk~~~P~~~~~p~~~~~Pc~~~~~~ 175 (687)
T 3k6s_B 105 IDLYYLMDLSYSMLDDLRNVKKL-GGDLLRALNE--I------TESGRIGFGSFVDKTVLPFVNTHPDKLRNPCPNKEKE 175 (687)
T ss_dssp CEEEEEEECSSTTHHHHHTTTTC-CTTHHHHHHS--S------CCSCEEEEEEECCCSSTTSSCCSSTTTTCCCCSCCCC
T ss_pred eeEEEEEcCCcchHHHHHHHHHH-HHHHHHHHHh--h------CcCcEEeeEEeeccccCCccccCchhccCCCCCCCCC
Confidence 69999999999999999999976 7888888854 1 24689999999995431
Q ss_pred --ccccee-eccCCCCHHHHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCC
Q 003284 64 --CACLVQ-RSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPL 140 (834)
Q Consensus 64 --~~~lv~-~~gfTsd~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~l 140 (834)
+.|..+ ...+|+|+++|..+++++.++||+|.||+..+||..|+.+-+.. .|....|.+||++|+++|-.
T Consensus 176 c~~~f~f~~~l~lt~~~~~F~~~v~~~~isgn~D~PE~g~dAl~qa~vc~~~i-------gWr~a~rllV~~TDa~~H~a 248 (687)
T 3k6s_B 176 CQPPFAFRHVLKLTNNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEI-------GWRNVTRLLVFATDDGFHFA 248 (687)
T ss_dssp CCCCCSCEEEEEEESCSHHHHHHHHTSCCCCCSSSSCCHHHHHHHHTTCHHHH-------CCCSSCCEEEEECSSCCCCT
T ss_pred cCCcccceeecccCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhhccccc-------CCccceEEEEEECCCccccC
Confidence 222222 35679999999999999999999999999999999999443211 12336789999999999954
Q ss_pred CC------------CcccCCccccccccchhhhhhccCCCHHHHHHHHhhcCcEEEEec-cCCchhHHHHHHH
Q 003284 141 PT------------PVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVIC-PKQLPKLTAIYNA 200 (834)
Q Consensus 141 p~------------pv~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIs-Prqlp~l~~Lfek 200 (834)
.. .|++ .+-.+..+.+. ..-+..+|++.|.|++|.+-++. -+.+..|++|.+.
T Consensus 249 gDg~l~gi~~pndg~Chl---~~~~y~~s~~~----DyPS~~ql~~~l~~~~I~~ifavt~~~~~~y~~l~~~ 314 (687)
T 3k6s_B 249 GDGKLGAILTPNDGRCHL---EDNLYKRSNEF----DYPSVGQLAHKLAENNIQPIFAVTSRMVKTYEKLTEI 314 (687)
T ss_dssp TGGGGGTCCCCCCSCCCC---SSSBCSSGGGS----CCCCGGGHHHHHHHTTCBCCEEECGGGHHHHHHHHHH
T ss_pred CCccccceecCCCCcccc---CCCcccccccc----CCCCHHHHHHHHHHcCCeEEEEEeccchhhHHHHHhh
Confidence 43 2222 21111121111 12346899999999999865544 4445666666553
No 7
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=99.05 E-value=2e-09 Score=107.22 Aligned_cols=149 Identities=15% Similarity=0.201 Sum_probs=107.6
Q ss_pred CccEEEEEeccccchH-hHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCC--CCHHH
Q 003284 3 EKQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWT--KDVDI 79 (834)
Q Consensus 3 ~~dvVFVID~Tasmg~-yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfT--sd~~~ 79 (834)
..|||||||++++|+. .|+.+| +++..+++.|.-+ ....|+|||.|.+..- ..+.|+ .|...
T Consensus 13 ~~divfvlD~SgSm~~~~~~~~k-~~~~~~v~~l~~~--------~~~~rv~vv~fs~~~~------~~~~l~~~~~~~~ 77 (202)
T 1ijb_A 13 LLDLVFLLDGSSRLSEAEFEVLK-AFVVDMMERLRVS--------QKWVRVAVVEYHDGSH------AYIGLKDRKRPSE 77 (202)
T ss_dssp CEEEEEEEECBTTSCHHHHHHHH-HHHHHHHHTBCBS--------TTSEEEEEEEESSSEE------EEECTTCCCCHHH
T ss_pred cccEEEEEECCCCCCHHHHHHHH-HHHHHHHHhcccC--------CCceEEEEEEECCCce------EEEecCCCCCHHH
Confidence 3799999999999985 788877 5678888887421 1357999999987622 234454 78899
Q ss_pred HHHHhccCccCCCCCchhhHHHHHHHHH-hhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccch
Q 003284 80 FLHWLSTIPFAGGGFNDAAIAEGLSEAL-MMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENN 158 (834)
Q Consensus 80 fl~~Ld~I~f~GGG~~~~AvaEGLa~AL-~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~ 158 (834)
+...|+.|.+.||| .-++.+||..|+ ++|.. . .+....|.+|||+|..++.-
T Consensus 78 ~~~~i~~l~~~gg~--~T~~~~aL~~a~~~~~~~---~----~r~~~~~~iillTDG~~~~~------------------ 130 (202)
T 1ijb_A 78 LRRIASQVKYAGSQ--VASTSEVLKYTLFQIFSK---I----DRPEASRIALLLMASQEPQR------------------ 130 (202)
T ss_dssp HHHHHHTCCCCCBS--CCCHHHHHHHHHHHTSSS---C----SCTTSEEEEEEEECCCCCGG------------------
T ss_pred HHHHHHhCcCCCCC--cCcHHHHHHHHHHHHhcc---C----CCCCCCeEEEEEccCCCCcc------------------
Confidence 99999999998775 356778888887 45641 0 12346789999998876411
Q ss_pred hhhhhccCCCHHHHHHHHhhcCcEEEEeccCC---chhHHHHHH
Q 003284 159 EAQAESRLSDAETVAKSFVQCSVSLSVICPKQ---LPKLTAIYN 199 (834)
Q Consensus 159 ~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrq---lp~l~~Lfe 199 (834)
...++...++.+.+++|.+++|.--. ...|+.|-.
T Consensus 131 ------~~~~~~~~a~~l~~~gi~i~~igvG~~~~~~~L~~iA~ 168 (202)
T 1ijb_A 131 ------MSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRLIEK 168 (202)
T ss_dssp ------GCTTHHHHHHHHHHTTEEEEEEEESTTSCHHHHHHHHH
T ss_pred ------chHHHHHHHHHHHHCCCEEEEEecCCcCCHHHHHHHhC
Confidence 01266788999999999999997653 244555544
No 8
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=99.00 E-value=2.4e-09 Score=104.51 Aligned_cols=139 Identities=12% Similarity=0.229 Sum_probs=101.0
Q ss_pred CccEEEEEeccccch-HhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCC----CH
Q 003284 3 EKQLIVAVEGTAAMG-PYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTK----DV 77 (834)
Q Consensus 3 ~~dvVFVID~Tasmg-~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTs----d~ 77 (834)
..|||||||++++|+ ..|+.+| +++..+++.|..+ ....++|||.|.+... ..+.|+. |.
T Consensus 17 ~~divfvlD~SgSm~~~~~~~~k-~~~~~~i~~l~~~--------~~~~rv~vv~F~~~~~------~~~~l~~~~~~~~ 81 (178)
T 2xgg_A 17 QLDICFLIDSSGSIGIQNFRLVK-QFLHTFLMVLPIG--------PEEVNNAVVTYSTDVH------LQWDLQSPNAVDK 81 (178)
T ss_dssp CEEEEEEEECCTTTCHHHHHHHH-HHHHHHHHHSCBS--------TTSEEEEEEEESSSEE------EEECTTSGGGSCH
T ss_pred CeeEEEEEECCCCCCHHHHHHHH-HHHHHHHHhcCCC--------CCCeEEEEEEeCCceE------EEEeCCCCCccCH
Confidence 479999999999996 4788776 5578888887431 1358999999987632 2344544 88
Q ss_pred HHHHHHhccCccCCCCCchhhHHHHHHHHHhh-cccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCcccccccc
Q 003284 78 DIFLHWLSTIPFAGGGFNDAAIAEGLSEALMM-FSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNE 156 (834)
Q Consensus 78 ~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~-f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e 156 (834)
..|+.+|+.|.+.||| ..+.+||..|++. |.... .......|.+|||+|..+..-
T Consensus 82 ~~~~~~i~~l~~~~g~---T~~~~aL~~a~~~l~~~~~-----g~r~~~~~~iillTDG~~~~~---------------- 137 (178)
T 2xgg_A 82 QLAAHAVLDMPYKKGS---TNTSDGLKACKQILFTGSR-----PGREHVPKLVIGMTDGESDSD---------------- 137 (178)
T ss_dssp HHHHHHHHHCCCCCCC---CCHHHHHHHHHHHHHHCCC-----TTCTTSCEEEEEEESSCCCHH----------------
T ss_pred HHHHHHHHhCCCCCCC---ccHHHHHHHHHHHhcCccc-----CCCCCCCEEEEEEcCCCCCCC----------------
Confidence 9999999999987775 4677888888875 54211 112356799999998766410
Q ss_pred chhhhhhccCCCHHHHHHHHhhcCcEEEEeccCC
Q 003284 157 NNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQ 190 (834)
Q Consensus 157 ~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrq 190 (834)
.+++.+++.+.+++|.+++|.--.
T Consensus 138 ----------~~~~~~~~~l~~~gi~v~~igvG~ 161 (178)
T 2xgg_A 138 ----------FRTVRAAKEIRELGGIVTVLAVGH 161 (178)
T ss_dssp ----------HHHSHHHHHHHHTTCEEEEEECC-
T ss_pred ----------ccHHHHHHHHHHCCCEEEEEEcCC
Confidence 135678899999999999997654
No 9
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=98.99 E-value=4e-09 Score=104.45 Aligned_cols=137 Identities=14% Similarity=0.209 Sum_probs=100.6
Q ss_pred CccEEEEEeccccchHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCC--CCHHHH
Q 003284 3 EKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWT--KDVDIF 80 (834)
Q Consensus 3 ~~dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfT--sd~~~f 80 (834)
..|||||||++++|++ |+.+| +++..+++.|.-+ ....|+|||.|.+..- ..++|+ .+...+
T Consensus 6 ~~div~vlD~SgSm~~-~~~~k-~~~~~~~~~l~~~--------~~~~rvglv~f~~~~~------~~~~l~~~~~~~~~ 69 (200)
T 1v7p_C 6 LIDVVVVCDESNSIYP-WDAVK-NFLEKFVQGLDIG--------PTKTQVGLIQYANNPR------VVFNLNTYKTKEEM 69 (200)
T ss_dssp CEEEEEEEECCTTCCC-HHHHH-HHHHHHHHTSCBS--------TTSEEEEEEEESSSEE------EEECTTTCSSHHHH
T ss_pred cccEEEEEECCCCccc-HHHHH-HHHHHHHHhcCCC--------CCceEEEEEEECCCce------EEEeCCCcCCHHHH
Confidence 3799999999999995 77776 5577778777421 1358999999987621 234554 588999
Q ss_pred HHHhccCccCCCCCchhhHHHHHHHHHh-hcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchh
Q 003284 81 LHWLSTIPFAGGGFNDAAIAEGLSEALM-MFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNE 159 (834)
Q Consensus 81 l~~Ld~I~f~GGG~~~~AvaEGLa~AL~-~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~ 159 (834)
+..|+.|...||+ ..++.+||..|++ +|.... .......|++|||+|-.++. .
T Consensus 70 ~~~i~~l~~~~G~--~T~~~~al~~a~~~~~~~~~-----g~r~~~~~~ivllTDG~~~~---~---------------- 123 (200)
T 1v7p_C 70 IVATSQTSQYGGD--LTNTFGAIQYARKYAYSAAS-----GGRRSATKVMVVVTDGESHD---G---------------- 123 (200)
T ss_dssp HHHHHHCCCCCCS--CCCHHHHHHHHHHHTTSGGG-----TCCTTSEEEEEEEESSCCSC---G----------------
T ss_pred HHHHHhhhccCCC--CCcHHHHHHHHHHhhccccc-----CCCCCCCeEEEEEccCCCCC---c----------------
Confidence 9999999987763 2468888899987 464211 11235678999999987751 0
Q ss_pred hhhhccCCCHHHHHHHHhhcCcEEEEecc
Q 003284 160 AQAESRLSDAETVAKSFVQCSVSLSVICP 188 (834)
Q Consensus 160 ~~~~~~l~d~e~lA~~~~e~~I~LSvIsP 188 (834)
.+++.+++.+.+++|.+++|.-
T Consensus 124 -------~~~~~~~~~~~~~gi~i~~igv 145 (200)
T 1v7p_C 124 -------SMLKAVIDQCNHDNILRFGIAV 145 (200)
T ss_dssp -------GGHHHHHHHHHHTTEEEEEEEE
T ss_pred -------ccHHHHHHHHHHCCCEEEEEEe
Confidence 1356788999999999999976
No 10
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=98.98 E-value=1.1e-08 Score=100.31 Aligned_cols=146 Identities=12% Similarity=0.251 Sum_probs=103.8
Q ss_pred CccEEEEEeccccch-HhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccC--CCCHHH
Q 003284 3 EKQLIVAVEGTAAMG-PYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGW--TKDVDI 79 (834)
Q Consensus 3 ~~dvVFVID~Tasmg-~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gf--Tsd~~~ 79 (834)
..|||||||++++|+ ..|+.+| +++.-+++.|.-+ ....|+|||.|.+... ..++| +.|...
T Consensus 5 ~~div~vlD~SgSm~~~~~~~~k-~~~~~~~~~l~~~--------~~~~rv~lv~f~~~~~------~~~~l~~~~~~~~ 69 (189)
T 1atz_A 5 PLDVILLLDGSSSFPASYFDEMK-SFAKAFISKANIG--------PRLTQVSVLQYGSITT------IDVPWNVVPEKAH 69 (189)
T ss_dssp CEEEEEEEECSSSSCHHHHHHHH-HHHHHHHHHSCBS--------TTSEEEEEEEESSSEE------EEECTTCCCCHHH
T ss_pred ceeEEEEEeCCCCCChhhHHHHH-HHHHHHHHhcCcC--------CCCeEEEEEEECCcce------EEEecCCCCCHHH
Confidence 479999999999998 6788877 4577788887421 1358999999976521 23455 899999
Q ss_pred HHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchh
Q 003284 80 FLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNE 159 (834)
Q Consensus 80 fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~ 159 (834)
+...|+.|.+.||| .++.+||..|++.+.....+ ......|++|+|++--+.
T Consensus 70 ~~~~i~~l~~~~g~---T~~~~aL~~a~~~l~~~~~g----~r~~~~~~vivltdg~~~--------------------- 121 (189)
T 1atz_A 70 LLSLVDVMQREGGP---SQIGDALGFAVRYLTSEMHG----ARPGASKAVVILVTDVSV--------------------- 121 (189)
T ss_dssp HHHHHHTCCCCCCC---CCHHHHHHHHHHHHHSCCTT----CCTTSEEEEEEEECSCCS---------------------
T ss_pred HHHHHHhCcCCCCc---chHHHHHHHHHHHHhccccC----CCCCCCcEEEEEeCCCCC---------------------
Confidence 99999999987765 57888888898766431111 112345778888766442
Q ss_pred hhhhccCCCHHHHHHHHhhcCcEEEEeccCCc---hhHHHHH
Q 003284 160 AQAESRLSDAETVAKSFVQCSVSLSVICPKQL---PKLTAIY 198 (834)
Q Consensus 160 ~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrql---p~l~~Lf 198 (834)
.+++.+++.+.+++|.+++|.--.- ..|+.|-
T Consensus 122 -------~~~~~~~~~~~~~gi~v~~igvG~~~~~~~L~~iA 156 (189)
T 1atz_A 122 -------DSVDAAADAARSNRVTVFPIGIGDRYDAAQLRILA 156 (189)
T ss_dssp -------SCCHHHHHHHHHTTEEEEEEEESSSSCHHHHHHHT
T ss_pred -------chHHHHHHHHHHCCCEEEEEEcCCcCCHHHHHHHH
Confidence 1346788899999999999976542 3444443
No 11
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.94 E-value=1.4e-09 Score=105.21 Aligned_cols=137 Identities=17% Similarity=0.223 Sum_probs=99.8
Q ss_pred ccEEEEEeccccchHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHHHHH
Q 003284 4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHW 83 (834)
Q Consensus 4 ~dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~fl~~ 83 (834)
.|||||||++++|+..|+.++ +++..+++.|.. ...++|||.|.+... ..++||.|...+..+
T Consensus 8 ~div~vlD~SgSM~~~~~~~~-~~~~~~~~~~~~----------~~~~v~lv~f~~~~~------~~~~l~~~~~~~~~~ 70 (185)
T 3n2n_F 8 FDLYFILDKSGSVLHHWNEIY-YFVEQLAHKFIS----------PQLRMSFIVFSTRGT------TLMKLTEDREQIRQG 70 (185)
T ss_dssp EEEEEEEECSGGGGGGHHHHH-HHHHHHHHHCCC----------TTEEEEEEEESSSEE------EEEEEECCHHHHHHH
T ss_pred eeEEEEEeCCCChhhhHHHHH-HHHHHHHHHhCC----------CCcEEEEEEEecCce------EEeccCCCHHHHHHH
Confidence 799999999999999888766 567788888732 257999999987632 356788899999999
Q ss_pred hccCc--cCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhhh
Q 003284 84 LSTIP--FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQ 161 (834)
Q Consensus 84 Ld~I~--f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~~ 161 (834)
|++|. +.||| ..+.+||..|++.+..... ......|++|||+|..+..-
T Consensus 71 i~~l~~~~~~g~---T~~~~al~~a~~~l~~~~~-----~~~~~~~~iillTDG~~~~~--------------------- 121 (185)
T 3n2n_F 71 LEELQKVLPGGD---TYMHEGFERASEQIYYENR-----QGYRTASVIIALTDGELHED--------------------- 121 (185)
T ss_dssp HHHHHTCCCCSC---CCHHHHHHHHHHHHHHHHT-----TCBCEEEEEEEEECCCCCHH---------------------
T ss_pred HHHHhhhcCCCC---ccHHHHHHHHHHHHhhccc-----cCCCCCcEEEEEcCCCCCCC---------------------
Confidence 99988 44665 4477777777764411000 11235789999998766310
Q ss_pred hhccCCCHHHHHHHHhhcCcEEEEeccC
Q 003284 162 AESRLSDAETVAKSFVQCSVSLSVICPK 189 (834)
Q Consensus 162 ~~~~l~d~e~lA~~~~e~~I~LSvIsPr 189 (834)
...+++..++.+.+++|.+++|.-.
T Consensus 122 ---~~~~~~~~~~~~~~~gi~i~~igvg 146 (185)
T 3n2n_F 122 ---LFFYSEREANRSRDLGAIVYAVGVK 146 (185)
T ss_dssp ---HHHHHHHHHHHHHHTTEEEEEEECS
T ss_pred ---cccchHHHHHHHHHCCCEEEEEEec
Confidence 0013467899999999999999876
No 12
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=98.89 E-value=5e-09 Score=102.88 Aligned_cols=138 Identities=12% Similarity=0.186 Sum_probs=99.6
Q ss_pred CccEEEEEeccccchH-hHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCC--CHHH
Q 003284 3 EKQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTK--DVDI 79 (834)
Q Consensus 3 ~~dvVFVID~Tasmg~-yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTs--d~~~ 79 (834)
..|||||||++++|+. .|+.+| +++..+++.|.. ...|+|||.|.+... ..++|+. |...
T Consensus 5 ~~div~vlD~SgSm~~~~~~~~k-~~~~~~~~~l~~----------~~~~v~vv~f~~~~~------~~~~l~~~~~~~~ 67 (194)
T 1mf7_A 5 DSDIAFLIDGSGSIIPHDFRRMK-EFVSTVMEQLKK----------SKTLFSLMQYSEEFR------IHFTFKEFQNNPN 67 (194)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHH-HHHHHHHHHHCC----------TTEEEEEEEESSSEE------EEECHHHHHHSCC
T ss_pred CeeEEEEEeCCCCCCHHHHHHHH-HHHHHHHHhcCC----------CCeEEEEEEecCCce------EEEecCCcCCHHH
Confidence 3799999999999987 788777 567888888851 357999999987632 3455554 3457
Q ss_pred HHHHhccCccCCCCCchhhHHHHHHHHHh-hcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccch
Q 003284 80 FLHWLSTIPFAGGGFNDAAIAEGLSEALM-MFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENN 158 (834)
Q Consensus 80 fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~-~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~ 158 (834)
+...|+.|.+.||| ..+.+||..|++ +|.... ..+....|.+|||+|..+..-+ .
T Consensus 68 ~~~~i~~l~~~~g~---T~~~~aL~~a~~~l~~~~~-----~~r~~~~~~iillTDG~~~~d~--~-------------- 123 (194)
T 1mf7_A 68 PRSLVKPITQLLGR---THTATGIRKVVRELFNITN-----GARKNAFKILVVITDGEKFGDP--L-------------- 123 (194)
T ss_dssp HHHHHTTCCCCCSC---BCHHHHHHHHHHTTTSGGG-----TCCTTSEEEEEEEESSCCBSCS--S--------------
T ss_pred HHHHHHhCcCCCCC---chHHHHHHHHHHHhcCccc-----CCCCCCCeEEEEEcCCCCCCCc--h--------------
Confidence 88899999987664 468889999995 664211 1123467899999998876211 1
Q ss_pred hhhhhccCCCHHHHHHHHhhcCcEEEEeccCC
Q 003284 159 EAQAESRLSDAETVAKSFVQCSVSLSVICPKQ 190 (834)
Q Consensus 159 ~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrq 190 (834)
+.+.+++.+.+++|.+++|.--.
T Consensus 124 ---------~~~~~~~~~~~~gi~v~~igvG~ 146 (194)
T 1mf7_A 124 ---------GYEDVIPEADREGVIRYVIGVGD 146 (194)
T ss_dssp ---------CGGGTHHHHHHTTEEEEEEEESG
T ss_pred ---------hhHHHHHHHHHCCCEEEEEEecc
Confidence 22445778899999999997654
No 13
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.84 E-value=4.3e-08 Score=97.44 Aligned_cols=132 Identities=17% Similarity=0.170 Sum_probs=99.2
Q ss_pred CccEEEEEeccccchH------hHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCC
Q 003284 3 EKQLIVAVEGTAAMGP------YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKD 76 (834)
Q Consensus 3 ~~dvVFVID~Tasmg~------yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd 76 (834)
..|||||||+++||.. -|+.+|. .+..+++.+. ..++|||.|.+.. ...++||.|
T Consensus 11 ~~~iv~vlD~SgSM~~~d~~~~r~~~ak~-~~~~~~~~~~------------~~~v~lv~F~~~~------~~~~~~~~~ 71 (218)
T 3ibs_A 11 GVEVIIALDISNSMLAQDVQPSRLEKAKR-LISRLVDELD------------NDKVGMIVFAGDA------FTQLPITSD 71 (218)
T ss_dssp CCEEEEEEECSGGGGCCSSSSCHHHHHHH-HHHHHHHTCS------------SCEEEEEEESSSE------EEEEEEESC
T ss_pred CCcEEEEEECCcCcccccCCcCHHHHHHH-HHHHHHHhCC------------CCeEEEEEECCCc------eEeCCCCCC
Confidence 4799999999999986 4777763 3555555441 3699999998762 245678999
Q ss_pred HHHHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCcccccccc
Q 003284 77 VDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNE 156 (834)
Q Consensus 77 ~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e 156 (834)
...+..+|+.|...........+.+||..|+.++... ....|.+|||+|-.+..
T Consensus 72 ~~~~~~~l~~l~~~~~~~g~T~l~~al~~a~~~l~~~---------~~~~~~ivllTDG~~~~----------------- 125 (218)
T 3ibs_A 72 YISAKMFLESISPSLISKQGTAIGEAINLATRSFTPQ---------EGVGRAIIVITDGENHE----------------- 125 (218)
T ss_dssp HHHHHHHHHTCCGGGCCSCSCCHHHHHHHHHTTSCSC---------SSCCEEEEEEECCTTCC-----------------
T ss_pred HHHHHHHHHhcCcccCCCCCCcHHHHHHHHHHHHhhC---------CCCCcEEEEEcCCCCCC-----------------
Confidence 9999999999986422233467899999999988642 23568999999876531
Q ss_pred chhhhhhccCCCHHHHHHHHhhcCcEEEEeccC
Q 003284 157 NNEAQAESRLSDAETVAKSFVQCSVSLSVICPK 189 (834)
Q Consensus 157 ~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPr 189 (834)
.+++.+++.+.+++|.+++|.--
T Consensus 126 ----------~~~~~~~~~~~~~~i~v~~igig 148 (218)
T 3ibs_A 126 ----------GGAVEAAKAAAEKGIQVSVLGVG 148 (218)
T ss_dssp ----------SCHHHHHHHHHTTTEEEEEEEES
T ss_pred ----------CcHHHHHHHHHhcCCEEEEEEec
Confidence 14678899999999999999654
No 14
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=98.83 E-value=2.8e-08 Score=100.15 Aligned_cols=140 Identities=14% Similarity=0.248 Sum_probs=98.3
Q ss_pred CccEEEEEeccccchHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHHHH
Q 003284 3 EKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLH 82 (834)
Q Consensus 3 ~~dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~fl~ 82 (834)
..|||||||++++|+. |+.+| +++..+++.|.- .....|+|||.|.+... .+..+....+...++.
T Consensus 22 ~~div~vlD~SgSM~~-~~~~k-~~~~~~~~~l~~--------~~~~~rv~lv~F~~~~~----~~~~l~~~~~~~~~~~ 87 (223)
T 2b2x_A 22 QLDIVIVLDGSNSIYP-WESVI-AFLNDLLKRMDI--------GPKQTQVGIVQYGENVT----HEFNLNKYSSTEEVLV 87 (223)
T ss_dssp CEEEEEEEECSTTCCC-HHHHH-HHHHHHHTTSCC--------STTSCCEEEEEESSSEE----EEECTTTCCSHHHHHH
T ss_pred cceEEEEEECCCChhh-HHHHH-HHHHHHHHhccc--------CCCCeEEEEEEeCCCcc----EEEecCCCCCHHHHHH
Confidence 3799999999999995 67666 446667766631 12358999999976522 1112233467889999
Q ss_pred HhccCccCCCCCchhhHHHHHHHHHhh-cccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhhh
Q 003284 83 WLSTIPFAGGGFNDAAIAEGLSEALMM-FSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQ 161 (834)
Q Consensus 83 ~Ld~I~f~GGG~~~~AvaEGLa~AL~~-f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~~ 161 (834)
.|+.|...||+ ...+.+||..|++. |+... .......|++|||+|..+..-
T Consensus 88 ~i~~l~~~gG~--~T~~~~aL~~a~~~l~~~~~-----~~~~~~~~~iillTDG~~~~~--------------------- 139 (223)
T 2b2x_A 88 AANKIVQRGGR--QTMTALGIDTARKEAFTEAR-----GARRGVKKVMVIVTDGESHDN--------------------- 139 (223)
T ss_dssp HHTTCCCCCCS--SCCHHHHHHHHHHTTSSGGG-----TCCTTSEEEEEEEESSCCTTG---------------------
T ss_pred HHHhhhccCCC--CccHHHHHHHHHHHhcCccc-----CCCCCCCeEEEEEcCCCCCCC---------------------
Confidence 99999877663 24678889999875 64211 112346789999998766410
Q ss_pred hhccCCCHHHHHHHHhhcCcEEEEeccC
Q 003284 162 AESRLSDAETVAKSFVQCSVSLSVICPK 189 (834)
Q Consensus 162 ~~~~l~d~e~lA~~~~e~~I~LSvIsPr 189 (834)
.+++.+++.+.+++|.+++|.--
T Consensus 140 -----~~~~~~~~~~~~~gi~v~~igvG 162 (223)
T 2b2x_A 140 -----YRLKQVIQDCEDENIQRFSIAIL 162 (223)
T ss_dssp -----GGHHHHHHHHHTTTEEEEEEEEC
T ss_pred -----ccHHHHHHHHHHCCCEEEEEEec
Confidence 14678899999999999999763
No 15
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=98.80 E-value=4.6e-08 Score=97.69 Aligned_cols=140 Identities=14% Similarity=0.223 Sum_probs=98.0
Q ss_pred CccEEEEEeccccchHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHHHH
Q 003284 3 EKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLH 82 (834)
Q Consensus 3 ~~dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~fl~ 82 (834)
..|||||||+++||+. |+.+| +++.-+++.|.- .....++|||.|.+... .+..+....+...++.
T Consensus 7 ~~div~vlD~SgSm~~-~~~~k-~~~~~~~~~l~~--------~~~~~~v~lv~F~~~~~----~~~~l~~~~~~~~~~~ 72 (213)
T 1pt6_A 7 QLDIVIVLDGSNSIYP-WDSVT-AFLNDLLKRMDI--------GPKQTQVGIVQYGENVT----HEFNLNKYSSTEEVLV 72 (213)
T ss_dssp CEEEEEEEECCTTCCC-HHHHH-HHHHHHHTTSCB--------STTSBEEEEEEESSSEE----EEECTTTCSSHHHHHH
T ss_pred CccEEEEEECCCChhh-HHHHH-HHHHHHHHhcCC--------CCCCeEEEEEEeCCCcc----EEEeccccCCHHHHHH
Confidence 4799999999999995 67766 456666666631 12458999999987532 1112233467889999
Q ss_pred HhccCccCCCCCchhhHHHHHHHHHhh-cccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhhh
Q 003284 83 WLSTIPFAGGGFNDAAIAEGLSEALMM-FSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQ 161 (834)
Q Consensus 83 ~Ld~I~f~GGG~~~~AvaEGLa~AL~~-f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~~ 161 (834)
.|+.|...||.. ..+.+||..|++. |.... .......|.+|||+|-.+..-
T Consensus 73 ~i~~l~~~~G~~--T~~~~aL~~a~~~l~~~~~-----~~r~~~~~~iillTDG~~~~~--------------------- 124 (213)
T 1pt6_A 73 AAKKIVQRGGRQ--TMTALGTDTARKEAFTEAR-----GARRGVKKVMVIVTDGESHDN--------------------- 124 (213)
T ss_dssp HHHTCCCCCCSS--CCHHHHHHHHHHTTTSGGG-----TCCTTCEEEEEEEESSCCSCS---------------------
T ss_pred HHHhccCCCCCc--ccHHHHHHHHHHHhcCccc-----CCCCCCCeEEEEEcCCCCCCC---------------------
Confidence 999998876632 4577888888875 54211 112356789999998866410
Q ss_pred hhccCCCHHHHHHHHhhcCcEEEEeccC
Q 003284 162 AESRLSDAETVAKSFVQCSVSLSVICPK 189 (834)
Q Consensus 162 ~~~~l~d~e~lA~~~~e~~I~LSvIsPr 189 (834)
.+++.+++.+.+++|.+++|.--
T Consensus 125 -----~~~~~~~~~~~~~gi~i~~igig 147 (213)
T 1pt6_A 125 -----HRLKKVIQDCEDENIQRFSIAIL 147 (213)
T ss_dssp -----HHHHHHHHHHHHTTEEEEEEEEC
T ss_pred -----ccHHHHHHHHHHCCCEEEEEEec
Confidence 13577889999999999999764
No 16
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.79 E-value=2.1e-08 Score=96.73 Aligned_cols=137 Identities=18% Similarity=0.191 Sum_probs=100.3
Q ss_pred CccEEEEEeccccchHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHHHH
Q 003284 3 EKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLH 82 (834)
Q Consensus 3 ~~dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~fl~ 82 (834)
..|||||||.+++|+..|.. +.+++..+++.|.+ ...++|||.|.+... ..++||.|...+..
T Consensus 6 ~~dvv~vlD~SgSM~~~~~~-~~~~~~~~~~~~~~----------~~~~v~lv~f~~~~~------~~~~~~~~~~~~~~ 68 (182)
T 1shu_X 6 AFDLYFVLDKSGSVANNWIE-IYNFVQQLAERFVS----------PEMRLSFIVFSSQAT------IILPLTGDRGKISK 68 (182)
T ss_dssp CEEEEEEEECSGGGGGGHHH-HHHHHHHHHHHCCC----------TTEEEEEEEESSSEE------EEEEEECCHHHHHH
T ss_pred ceeEEEEEECCCCcccCHHH-HHHHHHHHHHHhcC----------CCceEEEEEeCCCce------EEECCCCCHHHHHH
Confidence 37999999999999988776 44667777887732 357999999977522 35678889999988
Q ss_pred HhccCcc--CCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchhh
Q 003284 83 WLSTIPF--AGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEA 160 (834)
Q Consensus 83 ~Ld~I~f--~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~~ 160 (834)
+|+.|.. .+| ...+.+||..|+.++.+.. .....|.+|||+|..+..-.
T Consensus 69 ~l~~l~~~~~~g---~T~~~~al~~a~~~l~~~~-------~~~~~~~iiliTDG~~~~~~------------------- 119 (182)
T 1shu_X 69 GLEDLKRVSPVG---ETYIHEGLKLANEQIQKAG-------GLKTSSIIIALTDGKLDGLV------------------- 119 (182)
T ss_dssp HHHHHHTCCCCS---CCCHHHHHHHHHHHHHHHT-------GGGSCEEEEEEECCCCCTTH-------------------
T ss_pred HHHhcccCCCCC---CchHHHHHHHHHHHHHhcc-------CCCCCeEEEEECCCCcCCCC-------------------
Confidence 8888763 233 3568888999998875421 13457899999998764110
Q ss_pred hhhccCCCHHHHHHHHhhcCcEEEEeccCC
Q 003284 161 QAESRLSDAETVAKSFVQCSVSLSVICPKQ 190 (834)
Q Consensus 161 ~~~~~l~d~e~lA~~~~e~~I~LSvIsPrq 190 (834)
..+.+.+++.+.+++|.+++|.--.
T Consensus 120 -----~~~~~~~~~~~~~~~i~i~~igvg~ 144 (182)
T 1shu_X 120 -----PSYAEKEAKISRSLGASVYCVGVLD 144 (182)
T ss_dssp -----HHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred -----chhHHHHHHHHHhCCCEEEEEeCCc
Confidence 0124668889999999999998753
No 17
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.78 E-value=8e-08 Score=95.40 Aligned_cols=123 Identities=14% Similarity=0.168 Sum_probs=87.3
Q ss_pred CccEEEEEeccccchH-hHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCccccee-eccCCCCHHHH
Q 003284 3 EKQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQ-RSGWTKDVDIF 80 (834)
Q Consensus 3 ~~dvVFVID~Tasmg~-yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~-~~gfTsd~~~f 80 (834)
..|||||||++++|+. .|+.+| +++.-+++.|.... ...++|||.|.+... ..+. ...++.|...+
T Consensus 15 ~~div~vlD~SgSM~~~~~~~~k-~~~~~~i~~l~~~~--------~~~~v~lv~f~~~~~---~~~~~~~~~~~~~~~~ 82 (223)
T 1q0p_A 15 SMNIYLVLDGSDSIGASNFTGAK-KSLVNLIEKVASYG--------VKPRYGLVTYATYPK---IWVKVSEADSSNADWV 82 (223)
T ss_dssp CEEEEEEEECSTTTCHHHHHHHH-HHHHHHHHHHHTTT--------CCCEEEEEEESSSEE---EEECTTSGGGGCHHHH
T ss_pred ceeEEEEEeCCCCCchHHHHHHH-HHHHHHHHHHhcCC--------CCceEEEEEecCccc---eeeccccCCCCCHHHH
Confidence 3799999999999987 888887 55788888875421 246999999987632 1111 12567788999
Q ss_pred HHHhccCccCCCC-CchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCC
Q 003284 81 LHWLSTIPFAGGG-FNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPH 138 (834)
Q Consensus 81 l~~Ld~I~f~GGG-~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~ 138 (834)
...|++|.+.++. .+...+.+||..|+.++.+... ..+..+....|.+|||+|-.+.
T Consensus 83 ~~~i~~l~~~~~~~~g~T~~~~aL~~a~~~l~~~~~-~~~~~~~~~~~~iillTDG~~~ 140 (223)
T 1q0p_A 83 TKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDD-VPPEGWNRTRHVIILMTDGLHN 140 (223)
T ss_dssp HHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTTS-SCCTTGGGCEEEEEEEECSCCC
T ss_pred HHHHHhcccccccCCCCccHHHHHHHHHHHhhcccc-ccccccccCCeEEEEECCCCCC
Confidence 9999999986432 1245788999999987764221 1122334567889999998775
No 18
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=98.73 E-value=2.7e-08 Score=97.48 Aligned_cols=138 Identities=12% Similarity=0.209 Sum_probs=97.8
Q ss_pred CccEEEEEeccccchH-hHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCC--CHHH
Q 003284 3 EKQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTK--DVDI 79 (834)
Q Consensus 3 ~~dvVFVID~Tasmg~-yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTs--d~~~ 79 (834)
..|||||||++++|+. .|+.++ +++..+++.|. ....+++||.|.+... ..++|+. +...
T Consensus 9 ~~div~vlD~SgSM~~~~~~~~~-~~~~~~~~~l~----------~~~~~v~lv~f~~~~~------~~~~~~~~~~~~~ 71 (198)
T 1n3y_A 9 EQDIVFLIDGSGSISSRNFATMM-NFVRAVISQFQ----------RPSTQFSLMQFSNKFQ------THFTFEEFRRSSN 71 (198)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHH-HHHHHHHTTSC----------TTTEEEEEEEESSSEE------EEECHHHHHHCSS
T ss_pred CeeEEEEEECCCCCCHHHHHHHH-HHHHHHHHhcC----------CCCcEEEEEEeCCCcc------EEEecCccCCHHH
Confidence 3799999999999988 677544 55677777664 1358999999998722 2344433 2245
Q ss_pred HHHHhccCccCCCCCchhhHHHHHHHHH-hhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccch
Q 003284 80 FLHWLSTIPFAGGGFNDAAIAEGLSEAL-MMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENN 158 (834)
Q Consensus 80 fl~~Ld~I~f~GGG~~~~AvaEGLa~AL-~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~ 158 (834)
+..+|+.|.+.|| ...+.+||..|+ .+|.... ..+....|.+|||+|..+..-+
T Consensus 72 ~~~~i~~l~~~~g---~T~~~~al~~a~~~l~~~~~-----~~r~~~~~~iillTDG~~~~~~----------------- 126 (198)
T 1n3y_A 72 PLSLLASVHQLQG---FTYTATAIQNVVHRLFHASY-----GARRDAAKILIVITDGKKEGDS----------------- 126 (198)
T ss_dssp GGGGGTTCCCCCS---CBCHHHHHHHHHTTTTSGGG-----TCCTTSEEEEEEEESSCCBSCS-----------------
T ss_pred HHHHHhcCcCCCC---CchHHHHHHHHHHHHhCccc-----CCCCCCceEEEEECCCCCCCCc-----------------
Confidence 7788888887666 357888999999 5665311 1123457899999998775211
Q ss_pred hhhhhccCCCHHHHHHHHhhcCcEEEEeccCC
Q 003284 159 EAQAESRLSDAETVAKSFVQCSVSLSVICPKQ 190 (834)
Q Consensus 159 ~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrq 190 (834)
.+++.+++.+.+++|.+++|.--.
T Consensus 127 --------~~~~~~~~~~~~~gi~i~~igvG~ 150 (198)
T 1n3y_A 127 --------LDYKDVIPMADAAGIIRYAIGVGL 150 (198)
T ss_dssp --------SCHHHHHHHHHHTTCEEEEEEESG
T ss_pred --------ccHHHHHHHHHHCCCEEEEEEccc
Confidence 256788899999999999987644
No 19
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=98.72 E-value=4.9e-08 Score=101.77 Aligned_cols=139 Identities=19% Similarity=0.267 Sum_probs=100.4
Q ss_pred CccEEEEEeccccch-HhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCC----H
Q 003284 3 EKQLIVAVEGTAAMG-PYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKD----V 77 (834)
Q Consensus 3 ~~dvVFVID~Tasmg-~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd----~ 77 (834)
..|||||||++++|+ ..|....++++.-+++.|.-+ ....++|||.|.+..- ..+.++.+ .
T Consensus 18 ~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~--------~~~~rvglv~Fs~~~~------~~~~l~~~~~~~~ 83 (266)
T 4hqo_A 18 QVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLS--------RDTINLYMNLFGSYTT------ELIRLGSGQSIDK 83 (266)
T ss_dssp CEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBC--------TTSEEEEEEEESSSEE------EEECTTSHHHHCH
T ss_pred ceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccC--------CCCcEEEEEEecCCcc------eEEecCCCCccCH
Confidence 479999999999998 556434456678888888421 1358999999988622 34556554 6
Q ss_pred HHHHHHhccCc---cCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCcccccc
Q 003284 78 DIFLHWLSTIP---FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQ 154 (834)
Q Consensus 78 ~~fl~~Ld~I~---f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~ 154 (834)
..++..|+.|. ..||| -.+.+||..|..+|.... ......|.+|||+|-.|.. +
T Consensus 84 ~~~~~~i~~l~~~~~~~G~---T~~~~AL~~a~~~l~~~~------~r~~~~~~iIllTDG~~~d---~----------- 140 (266)
T 4hqo_A 84 RQALSKVTELRKTYTPYGT---TSMTAALDEVQKHLNDRV------NREKAIQLVILMTDGVPNS---K----------- 140 (266)
T ss_dssp HHHHHHHHHHHHHCCCCSC---CCHHHHHHHHHHHHHTTC------SCTTSEEEEEEEECSCCSC---H-----------
T ss_pred HHHHHHHHHhhhccCCCCC---CCHHHHHHHHHHHHhhcc------ccCCCCeEEEEEccCCCCC---c-----------
Confidence 78888999986 55554 457788888888886421 2234579999999887641 0
Q ss_pred ccchhhhhhccCCCHHHHHHHHhhcCcEEEEeccCC
Q 003284 155 NENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQ 190 (834)
Q Consensus 155 ~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrq 190 (834)
.+....++.+.+.||.+++|.--.
T Consensus 141 ------------~~~~~~a~~l~~~gi~i~~iGiG~ 164 (266)
T 4hqo_A 141 ------------YRALEVANKLKQRNVRLAVIGIGQ 164 (266)
T ss_dssp ------------HHHHHHHHHHHHTTCEEEEEECSS
T ss_pred ------------hHHHHHHHHHHHCCCEEEEEecCc
Confidence 145778999999999999998765
No 20
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.71 E-value=2.1e-07 Score=98.57 Aligned_cols=160 Identities=13% Similarity=0.140 Sum_probs=111.9
Q ss_pred EEEEEeccccchH------hHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHH
Q 003284 6 LIVAVEGTAAMGP------YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDI 79 (834)
Q Consensus 6 vVFVID~Tasmg~------yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~ 79 (834)
+|||||.+.+|.. -|+..| +.+.-+++.+.... ...++|||+|.+..+ . ...++|.|..+
T Consensus 6 tViviD~S~SM~~~D~~PsRl~a~k-~Av~~li~~~~~~n--------Ped~VGLVtfag~~~----~-vl~plT~D~~~ 71 (268)
T 4b4t_W 6 TVLVIDNSEYSRNGDFPRTRFEAQI-DSVEFIFQAKRNSN--------PENTVGLISGAGANP----R-VLSTFTAEFGK 71 (268)
T ss_dssp EEEEECCSSTTSSTTSSSCHHHHHH-HHHHHHHHHHHHHC--------TTCEEEEEECCTTSC----E-EEEEEESCHHH
T ss_pred EEEEEECCHHHhCCCCCCcHHHHHH-HHHHHHHHHHhhCC--------CcceEEEEEecCCcc----e-eccCCcchHHH
Confidence 8999999999952 255555 45666666553311 125999999986532 2 23578999999
Q ss_pred HHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchh
Q 003284 80 FLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNE 159 (834)
Q Consensus 80 fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~ 159 (834)
++..|++|+..|+ .++..||..|+..+.... .....+++||+.+++-. +
T Consensus 72 il~aL~~l~~~G~----T~l~~gL~~A~~aLk~~~-------~k~~~~rIIlf~ds~~~-----~--------------- 120 (268)
T 4b4t_W 72 ILAGLHDTQIEGK----LHMATALQIAQLTLKHRQ-------NKVQHQRIVAFVCSPIS-----D--------------- 120 (268)
T ss_dssp HHHHHTTCCCCSC----CCHHHHHHHHHHHHHTCS-------CTTSEEEEEEEECSCCS-----S---------------
T ss_pred HHHHhhhcCcCCC----CChHHHHHHHHHHHHhcc-------cCCCceEEEEEECCCCC-----C---------------
Confidence 9999999985433 567778888887775322 12345677888777532 1
Q ss_pred hhhhccCCCHHHHHHHHhhcCcEEEEeccC----CchhHHHHHHHhcCCCCCCCCCCCCCCCCCeEEEee
Q 003284 160 AQAESRLSDAETVAKSFVQCSVSLSVICPK----QLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLIS 225 (834)
Q Consensus 160 ~~~~~~l~d~e~lA~~~~e~~I~LSvIsPr----qlp~l~~Lfeka~~~~~~~~~~~~~ak~p~hlVLLs 225 (834)
.-.+++.+|+.+.++||.|+||.=- .-.+|++|.++..++. -+-.|||-|.
T Consensus 121 -----~~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng~~----------~~~s~~v~v~ 175 (268)
T 4b4t_W 121 -----SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQ----------EETSHLLTVT 175 (268)
T ss_dssp -----CHHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHCSST----------TTSCEEEEEC
T ss_pred -----CHHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhcCCC----------CCceeEEEeC
Confidence 0025789999999999999999854 4588999999988752 1235888873
No 21
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.61 E-value=1.3e-07 Score=98.80 Aligned_cols=138 Identities=13% Similarity=0.235 Sum_probs=95.5
Q ss_pred CccEEEEEeccccchH-hH-HHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCC----C
Q 003284 3 EKQLIVAVEGTAAMGP-YW-QSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTK----D 76 (834)
Q Consensus 3 ~~dvVFVID~Tasmg~-yi-~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTs----d 76 (834)
..|||||||++++|+. .| +.+| +.+.-+++.|..+ ....++|||.|.+... ..+.++. |
T Consensus 21 ~~div~vlD~SgSM~~~~~~~~~k-~~~~~~v~~l~~~--------~~~~rvglv~Fs~~~~------~~~~l~~~~~~~ 85 (281)
T 4hqf_A 21 EVDLYLLMDGSGSIRRHNWVNHAV-PLAMKLIQQLNLN--------DNAIHLYASVFSNNAR------EIIRLHSDASKN 85 (281)
T ss_dssp CEEEEEEEECCCCSSTHHHHHHHH-HHHHHHHTTCCCC--------TTSEEEEEEEEETTEE------EEEEECSSCSSC
T ss_pred ceeEEEEEeCCCCcCHHHHHHHHH-HHHHHHHHHhccC--------CCCcEEEEEEcCCCce------EEEEccccCccC
Confidence 4799999999999984 44 5454 5566666666421 2358999999987632 2233333 4
Q ss_pred HHHHHHHhccCc---cCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccc
Q 003284 77 VDIFLHWLSTIP---FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLD 153 (834)
Q Consensus 77 ~~~fl~~Ld~I~---f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~ 153 (834)
...++..|+.|. +.||| -.+.+||..|+..|.... ......|.+|||+|-.+.. +
T Consensus 86 ~~~l~~~i~~l~~~~~~~G~---T~~~~aL~~a~~~l~~~~------~r~~~~~~iillTDG~~~d---~---------- 143 (281)
T 4hqf_A 86 KEKALIIIKSLLSTNLPYGK---TSLTDALLQVRKHLNDRI------NRENANQLVVILTDGIPDS---I---------- 143 (281)
T ss_dssp HHHHHHHHHHHHHTTGGGCS---CCHHHHHHHHHHHHHTSC------CCTTCEEEEEEEESSCCSC---H----------
T ss_pred HHHHHHHHHHHhhccCCCCC---ccHHHHHHHHHHHHHhcc------CCCCCCEEEEEEecCCCCC---c----------
Confidence 788888888886 45554 457788888887665321 1234578999999876641 0
Q ss_pred cccchhhhhhccCCCHHHHHHHHhhcCcEEEEeccCC
Q 003284 154 QNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQ 190 (834)
Q Consensus 154 ~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrq 190 (834)
.+....++.+.++||.+++|.--.
T Consensus 144 -------------~~~~~~~~~l~~~gv~i~~igiG~ 167 (281)
T 4hqf_A 144 -------------QDSLKESRKLSDRGVKIAVFGIGQ 167 (281)
T ss_dssp -------------HHHHHHHHHHHHTTCEEEEEEESS
T ss_pred -------------HHHHHHHHHHHHCCCEEEEEeCCC
Confidence 145678889999999999997655
No 22
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=98.60 E-value=2.4e-07 Score=92.04 Aligned_cols=114 Identities=13% Similarity=0.244 Sum_probs=84.6
Q ss_pred CccEEEEEeccccchH-hHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCC--CCHHH
Q 003284 3 EKQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWT--KDVDI 79 (834)
Q Consensus 3 ~~dvVFVID~Tasmg~-yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfT--sd~~~ 79 (834)
..|||||||++++|+. .|+.+| +++.-+++.|.-+ ....|+|||.|.+... ..+.|+ .|...
T Consensus 21 ~~DivfvlD~S~Sm~~~~~~~~k-~~~~~~~~~l~~~--------~~~~rv~vv~fs~~~~------~~~~l~~~~~~~~ 85 (199)
T 3zqk_A 21 VLDVAFVLEGSDKIGEADFNRSK-EFMEEVIQRMDVG--------QDSIHVTVLQYSYMVT------VEYPFSEAQSKGD 85 (199)
T ss_dssp CCEEEEEEECCTTTCHHHHHHHH-HHHHHHHHHSCBS--------TTSBEEEEEEESSSEE------EEECTTSCCCHHH
T ss_pred CcCEEEEEECCCCCCHHHHHHHH-HHHHHHHHhcCCC--------CCceEEEEEEECCccc------EEEecCCcCCHHH
Confidence 3799999999999995 588877 6688888888421 2358999999998632 234444 48899
Q ss_pred HHHHhccCccCCCCCchhhHHHHHHHHHh-hcccCCCCCCCCCCccCCcEEEEeecCCCC
Q 003284 80 FLHWLSTIPFAGGGFNDAAIAEGLSEALM-MFSVAPNGSQNQQNVDGQRHCILVAASNPH 138 (834)
Q Consensus 80 fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~-~f~~~~~~~~~~~~~~~qkhCILIa~SpP~ 138 (834)
++..|++|.+.||+. -++.+||..|++ +|.... ..+....|.+|||+|..+.
T Consensus 86 ~~~~i~~l~~~gg~~--T~~~~aL~~a~~~l~~~~~-----g~r~~~~~~iillTDG~~~ 138 (199)
T 3zqk_A 86 ILQRLREIRYQGGNR--TNTGLALRYLSDHSFLVSQ-----GDREQAPNLVYMVTGNPAS 138 (199)
T ss_dssp HHHHHHHCCCCCCSC--CCHHHHHHHCCCCCTCGGG-----TCCTTSCEEEEEEECSCCS
T ss_pred HHHHHHhCcCCCCCc--ChHHHHHHHHHHHhhCccc-----CCCCCCCeEEEEEeCCCCc
Confidence 999999999988732 458888888886 453211 1234567999999998754
No 23
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=98.55 E-value=3.8e-07 Score=106.87 Aligned_cols=119 Identities=13% Similarity=0.160 Sum_probs=86.0
Q ss_pred ccEEEEEeccccchH-hHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCC----CHH
Q 003284 4 KQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTK----DVD 78 (834)
Q Consensus 4 ~dvVFVID~Tasmg~-yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTs----d~~ 78 (834)
.|||||||.+++|+. .|+.+| +.+..+++.|..++ ...|||||.|.+..- ..+.++. |.+
T Consensus 244 ~div~vlD~SgSM~~~~~~~~k-~~~~~~i~~l~~~~--------~~~rv~lv~f~~~~~------~~~~l~~~~~~~~~ 308 (741)
T 3hrz_D 244 MNIYLVLDGSGSIGASDFTGAK-KCLVNLIEKVASYG--------VKPRYGLVTYATYPK------IWVKVSEADSSNAD 308 (741)
T ss_dssp EEEEEEEECSTTTCHHHHHHHH-HHHHHHHHHHHHTT--------CCCEEEEEEESSSEE------EEECTTSGGGGCHH
T ss_pred eeEEEEeccCCcccccchHHHH-HHHHHHHHhhhccC--------CCceEEEEEeccCCc------eeEeecccCCcCHH
Confidence 699999999999954 588877 55888888886421 257999999977522 3456655 899
Q ss_pred HHHHHhccCccCCCC-CchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCC
Q 003284 79 IFLHWLSTIPFAGGG-FNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPH 138 (834)
Q Consensus 79 ~fl~~Ld~I~f~GGG-~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~ 138 (834)
.++..|++|.+.++. ...-++.+||..|+++|.+... ..+..+....|.+|||+|--+.
T Consensus 309 ~~~~~i~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~-~~~~~~~~~~~~iillTDG~~n 368 (741)
T 3hrz_D 309 WVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDD-VPPEGWNRTRHVIILMTDGLHN 368 (741)
T ss_dssp HHHHHHTTCCGGGGSSSCCCCHHHHHHHHHHHHCCC---CCCTTGGGEEEEEEEEECSCCC
T ss_pred HHHHHHHhcccccccCCCChHHHHHHHHHHHHHhhhhh-ccccchhccCeEEEEECCCccc
Confidence 999999999984332 1235688999999987743221 1233445678899999998665
No 24
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=98.54 E-value=2e-06 Score=86.43 Aligned_cols=159 Identities=18% Similarity=0.205 Sum_probs=105.3
Q ss_pred ccEEEEEeccccchH------hHHHHHHHHHHHHHHHH-hccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCC
Q 003284 4 KQLIVAVEGTAAMGP------YWQSIVSDYLEKIIRCF-CVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKD 76 (834)
Q Consensus 4 ~dvVFVID~Tasmg~------yi~~lkt~YI~p~le~f-~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd 76 (834)
..||||||.+.+|.. -|+..| ..+.-+++.| ... ...++|||+|.+... + ...++|.|
T Consensus 3 e~lvlvlD~S~SM~~~D~~psRl~~ak-~~~~~~~~~~~~~~---------~~d~vGLV~fa~~~a---~--~~~plT~d 67 (192)
T 2x5n_A 3 EATMILIDNSEWMINGDYIPTRFEAQK-DTVHMIFNQKINDN---------PENMCGLMTIGDNSP---Q--VLSTLTRD 67 (192)
T ss_dssp EEEEEEECCSGGGGCTTSSSCHHHHHH-HHHHHHHHHHHHHC---------TTCEEEEEECCTTSC---C--EEEEEESC
T ss_pred eEEEEEEECCHhhccCCCCCCHHHHHH-HHHHHHHHHHHhcC---------CCCeEEEEEEcCCCc---E--EecCCCCC
Confidence 468999999999972 245554 3344444433 221 235999999998522 2 23578999
Q ss_pred HHHHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcE-EEEeecCCCCCCCCCcccCCccccccc
Q 003284 77 VDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRH-CILVAASNPHPLPTPVYRPQMQNLDQN 155 (834)
Q Consensus 77 ~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkh-CILIa~SpP~~lp~pv~~p~~~~~~~~ 155 (834)
...++..|+.|...| ..++.+||..|+.+|..... ....++ +||+++ .=. -.
T Consensus 68 ~~~i~~~L~~l~~~g----~t~l~~aL~~A~~~l~~~~~-------~~~~~riiil~~~-~~~--~~------------- 120 (192)
T 2x5n_A 68 YGKFLSAMHDLPVRG----NAKFGDGIQIAQLALKHREN-------KIQRQRIVAFVGS-PIV--ED------------- 120 (192)
T ss_dssp HHHHHHHHTTCCCCS----CCCHHHHHHHHHHHHHTCSC-------TTSEEEEEEEECS-CCS--SC-------------
T ss_pred HHHHHHHHHcCCCCC----CchHHHHHHHHHHHHHhccc-------cCCCceEEEEEEC-CCC--CC-------------
Confidence 999999999988643 26899999999988864221 112233 455543 110 00
Q ss_pred cchhhhhhccCCCHHHHHHHHhhcCcEEEEeccCC----chhHHHHHHHhcCCCCCCCCCCCCCCCCCeEEEeecc
Q 003284 156 ENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQ----LPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISEN 227 (834)
Q Consensus 156 e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrq----lp~l~~Lfeka~~~~~~~~~~~~~ak~p~hlVLLsg~ 227 (834)
..+.+.+++.++++||.+++|.--. -. |++|.++.+.+. -.|||-+..+
T Consensus 121 ----------~~~~~~~a~~lk~~gi~v~~Ig~G~~~~~~~-l~~la~~~n~~~------------~s~~~~~~~~ 173 (192)
T 2x5n_A 121 ----------EKNLIRLAKRMKKNNVAIDIIHIGELQNESA-LQHFIDAANSSD------------SCHLVSIPPS 173 (192)
T ss_dssp ----------HHHHHHHHHHHHHTTEEEEEEEESCC---CH-HHHHHHHHCSTT------------CCEEEEECCC
T ss_pred ----------chhHHHHHHHHHHCCCEEEEEEeCCCCccHH-HHHHHHhccCCC------------ceEEEEecCc
Confidence 0246789999999999999997642 24 899998876332 2588877665
No 25
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=98.54 E-value=3.9e-07 Score=102.35 Aligned_cols=121 Identities=10% Similarity=0.141 Sum_probs=84.2
Q ss_pred CccEEEEEeccccchH-hHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCC----CCH
Q 003284 3 EKQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWT----KDV 77 (834)
Q Consensus 3 ~~dvVFVID~Tasmg~-yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfT----sd~ 77 (834)
..|||||||.++||+. .|+.+| +.|..+++.|... ....|+|||.|.+... ..++++ .|.
T Consensus 9 ~~divfvlD~SgSM~~~~~~~~k-~~~~~l~~~l~~~--------~~~~rv~lv~f~~~~~------~~~~l~~~~~~~~ 73 (509)
T 2odp_A 9 HLNLYLLLDASQSVSENDFLIFK-ESASLMVDRIFSF--------EINVSVAIITFASEPK------VLMSVLNDNSRDM 73 (509)
T ss_dssp EEEEEEEEECSTTSCHHHHHHHH-HHHHHHHHHHHTT--------CCCEEEEEEEESSSEE------EEECTTSGGGGCH
T ss_pred CeeEEEEEeCCCccchhhHHHHH-HHHHHHHHHhhcc--------CCCceEEEEEccCCCc------eeEeccCCCCCCH
Confidence 4899999999999987 677776 5588888888431 1347999999977532 234444 499
Q ss_pred HHHHHHhccCccCCCCC-chhhHHHHHHHHHhhcccCCC--CCCCCCCccCCcEEEEeecCCCC
Q 003284 78 DIFLHWLSTIPFAGGGF-NDAAIAEGLSEALMMFSVAPN--GSQNQQNVDGQRHCILVAASNPH 138 (834)
Q Consensus 78 ~~fl~~Ld~I~f~GGG~-~~~AvaEGLa~AL~~f~~~~~--~~~~~~~~~~qkhCILIa~SpP~ 138 (834)
..++..|++|.+.++.. ....+.+||..|+++|..... ......+....|.+|||+|-.+.
T Consensus 74 ~~~~~~l~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~ 137 (509)
T 2odp_A 74 TEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSN 137 (509)
T ss_dssp HHHHHHHHTCCGGGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCC
T ss_pred HHHHHHHHhcccccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCcc
Confidence 99999999999986432 346788888888887732110 00001122356889999998765
No 26
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=98.54 E-value=4.8e-07 Score=101.07 Aligned_cols=122 Identities=14% Similarity=0.189 Sum_probs=85.3
Q ss_pred ccEEEEEeccccchH-hHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCccccee-eccCCCCHHHHH
Q 003284 4 KQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQ-RSGWTKDVDIFL 81 (834)
Q Consensus 4 ~dvVFVID~Tasmg~-yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~-~~gfTsd~~~fl 81 (834)
.|||||||.++||+. .|+.+| +.+.-+++.|... ....++|||.|.+... ..+. ...+|.|.+.+.
T Consensus 2 ~div~vlD~SgSM~~~~~~~~k-~~~~~~~~~l~~~--------~~~~~v~lv~f~~~~~---~~~~~~~~~~~~~~~~~ 69 (497)
T 1rrk_A 2 MNIYLVLDGSDSIGASNFTGAK-KVLVNLIEKVASY--------GVKPRYGLVTYATYPK---IWVKVSEADSSNADWVT 69 (497)
T ss_dssp EEEEEEEECSTTTCHHHHHHHH-HHHHHHHHHHHHT--------TCCCEEEEEEESSSEE---EEECTTSGGGGCHHHHH
T ss_pred eeEEEEEECCCCcchhhHHHHH-HHHHHHHHHhhcc--------CCCceEEEEEecCCce---EeeccccccccCHHHHH
Confidence 699999999999974 677777 4477888887432 1247999999986522 1111 125678999999
Q ss_pred HHhccCccCCCCC-chhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCC
Q 003284 82 HWLSTIPFAGGGF-NDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPH 138 (834)
Q Consensus 82 ~~Ld~I~f~GGG~-~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~ 138 (834)
..|++|.+.|+.. ....+.+||..|+.++.+... ..+..+....|.+|||+|-.+.
T Consensus 70 ~~l~~l~~~~~~~~g~T~~~~al~~a~~~l~~~~~-~~~~~~~~~~~~iillTDG~~~ 126 (497)
T 1rrk_A 70 KQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDD-VPPEGWNRTRHVIILMTDGLHN 126 (497)
T ss_dssp HHHHHCCGGGSCCTTCCCHHHHHHHHHHHHCCC-------CGGGCEEEEEEEECSCCC
T ss_pred HHHHhCcCccccccCccCHHHHHHHHHHHhhhhhc-cccccccccceEEEEEeCCCcc
Confidence 9999999866432 347788999999988743221 1122334567899999998765
No 27
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=98.50 E-value=6.2e-07 Score=87.58 Aligned_cols=111 Identities=13% Similarity=0.198 Sum_probs=78.3
Q ss_pred CccEEEEEeccccchH-hHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCH--HH
Q 003284 3 EKQLIVAVEGTAAMGP-YWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDV--DI 79 (834)
Q Consensus 3 ~~dvVFVID~Tasmg~-yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~--~~ 79 (834)
..|||||||++++|+. .|+.+| +++.-+++.|.. ...|+|||.|.+... ..++|+... ..
T Consensus 2 ~~divfvlD~S~Sm~~~~~~~~k-~~~~~~~~~l~~----------~~~rv~vv~fs~~~~------~~~~l~~~~~~~~ 64 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQPDEFQKIL-DFMKDVMKKCSN----------TSYQFAAVQFSTSYK------TEFDFSDYVKRKD 64 (179)
T ss_dssp CEEEEEEEECBTTCCHHHHHHHH-HHHHHHHHHTTT----------SSEEEEEEEESSSEE------EEECHHHHHHHCC
T ss_pred CccEEEEEeCCCCCCHHHHHHHH-HHHHHHHHHhCC----------CCeEEEEEEECCcee------EEEcCcccCCHHH
Confidence 4799999999999987 587776 567788888721 357999999987632 235555422 24
Q ss_pred HHHHhccCccCCCCCchhhHHHHHHHHHh-hcccCCCCCCCCCCccCCcEEEEeecCCCC
Q 003284 80 FLHWLSTIPFAGGGFNDAAIAEGLSEALM-MFSVAPNGSQNQQNVDGQRHCILVAASNPH 138 (834)
Q Consensus 80 fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~-~f~~~~~~~~~~~~~~~qkhCILIa~SpP~ 138 (834)
+...++.|...+|| -++.+||..|++ +|.... .......|.+|||+|-.+.
T Consensus 65 ~~~~~~~i~~~~g~---T~~~~aL~~a~~~~~~~~~-----g~r~~~~~~iillTDG~~~ 116 (179)
T 1mjn_A 65 PDALLKHVKHMLLL---TNTFGAINYVATEVFREEL-----GARPDATKVLIIITDGEAT 116 (179)
T ss_dssp HHHHHTTCCCCCBC---CCHHHHHHHHHHHTSSGGG-----TCCTTSEEEEEEEESSCCS
T ss_pred HHHHHHhcccCCCC---ChHHHHHHHHHHHhccccc-----CCCCCCCeEEEEEcCCCCC
Confidence 66777888877654 578899999984 674211 1123467899999998764
No 28
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=98.33 E-value=7.5e-07 Score=110.28 Aligned_cols=138 Identities=12% Similarity=0.192 Sum_probs=103.5
Q ss_pred ccEEEEEeccccchHh-HHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCC--CHHHH
Q 003284 4 KQLIVAVEGTAAMGPY-WQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTK--DVDIF 80 (834)
Q Consensus 4 ~dvVFVID~Tasmg~y-i~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTs--d~~~f 80 (834)
.|||||||++++|++. |+.+| +++..+++.|.. ...|+|||.|.+.. ...+.++. |...+
T Consensus 131 ~DIvfvlD~SgSm~~~~f~~~k-~fv~~lv~~~~~----------~~~rVglV~Fs~~~------~~~~~lt~~~~~~~l 193 (1095)
T 3k6s_A 131 QDIVFLIDGSGSISSRNFATMM-NFVRAVISQFQR----------PSTQFSLMQFSNKF------QTHFTFEEFRRSSNP 193 (1095)
T ss_dssp EEEEEEEECCTTSCSHHHHHHH-HHHHHHHHSSCS----------SSEEEEEEEESSSE------EEEECSHHHHSCSCG
T ss_pred ccEEEEEcCCCCCChhHHHHHH-HHHHHHHHhccc----------cccEEEEEEECCeE------EEEecCcccCCHHHH
Confidence 7999999999999986 88776 667888888752 35899999998752 23456654 56677
Q ss_pred HHHhccCccCCCCCchhhHHHHHHHHHh-hcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccccchh
Q 003284 81 LHWLSTIPFAGGGFNDAAIAEGLSEALM-MFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNE 159 (834)
Q Consensus 81 l~~Ld~I~f~GGG~~~~AvaEGLa~AL~-~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e~~~ 159 (834)
...++.|...||| -++.+||..|++ +|... +..+....|.+|||+|-.+..-+
T Consensus 194 ~~ai~~i~~~gG~---T~~g~AL~~a~~~lf~~~-----~g~R~~~~kviIllTDG~~~~d~------------------ 247 (1095)
T 3k6s_A 194 LSLLASVHQLQGF---TYTATAIQNVVHRLFHAS-----YGARRDAAKILIVITDGKKEGDS------------------ 247 (1095)
T ss_dssp GGGTTTCCCCCSC---BCHHHHHHHHHTTTTSTT-----TTCCSSSEEEEEEEESSCCBSCS------------------
T ss_pred HHHHhhhhcccCC---ChHHHHHHHHHHhhcccc-----ccCCCCCCeEEEEEeCCCcCCCc------------------
Confidence 8889999888774 678999999987 55421 11234567899999988774111
Q ss_pred hhhhccCCCHHHHHHHHhhcCcEEEEeccCCc
Q 003284 160 AQAESRLSDAETVAKSFVQCSVSLSVICPKQL 191 (834)
Q Consensus 160 ~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrql 191 (834)
.+.+.+|+.+.+.||.+++|.--..
T Consensus 248 -------~~~~~~a~~~r~~GI~i~aIGVG~~ 272 (1095)
T 3k6s_A 248 -------LDYKDVIPMADAAGIIRYAIGVGLA 272 (1095)
T ss_dssp -------SCHHHHHHHHHHHCEEECCEEBSSG
T ss_pred -------hhHHHHHHHHHHCCCEEEEEecccc
Confidence 2567889999999999999987663
No 29
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=98.29 E-value=1.6e-06 Score=84.52 Aligned_cols=109 Identities=17% Similarity=0.200 Sum_probs=76.3
Q ss_pred CccEEEEEeccccc-hHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHHH
Q 003284 3 EKQLIVAVEGTAAM-GPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFL 81 (834)
Q Consensus 3 ~~dvVFVID~Tasm-g~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~fl 81 (834)
.+|||||||+++|| +..|+.+|.- +.-+++.+. ....+++||.|.+... ...+++|.|...+.
T Consensus 5 ~~~vv~vlD~SgSM~~~~~~~~k~~-~~~~~~~~~----------~~~~~v~lv~f~~~~~-----~~~~~~~~~~~~~~ 68 (189)
T 2x31_A 5 DRVLIFAVDASGSAAVARLSEAKGA-VELLLGRAY----------AARDHVSLITFRGTAA-----QVLLQPSRSLTQTK 68 (189)
T ss_dssp CCEEEEEEECCTTSCC--CHHHHHH-HHHHHHHSC----------TTTSCCCEEEESBSCC-----CBCTTTCSCHHHHH
T ss_pred CeEEEEEEECCCCCCchHHHHHHHH-HHHHHHHhc----------CCCcEEEEEEECCCCc-----eEecCCCCCHHHHH
Confidence 48999999999999 5667766644 555555441 1346999999987422 13467889999999
Q ss_pred HHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCC
Q 003284 82 HWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPH 138 (834)
Q Consensus 82 ~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~ 138 (834)
.+|+.+...|| ..+.+||..|+.++.... .....+.+|||+|-.|.
T Consensus 69 ~~i~~l~~~g~----T~~~~al~~a~~~l~~~~-------~~~~~~~ivliTDG~~~ 114 (189)
T 2x31_A 69 RQLQGLPGGGG----TPLASGMEMAMVTAKQAR-------SRGMTPTIALLTDGRGN 114 (189)
T ss_dssp HHHHHCCCCBC----CCCHHHHHHHHHHHHTCT-------TTCSSEEEEECCBSCCS
T ss_pred HHHhcCCCCCC----CCHHHHHHHHHHHHHhcc-------CCCCceEEEEECCCCCC
Confidence 99999986443 345677778887775321 12356899999998775
No 30
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=98.13 E-value=2.4e-05 Score=88.56 Aligned_cols=105 Identities=13% Similarity=0.128 Sum_probs=77.2
Q ss_pred CccEEEEEeccccch---HhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCC-----
Q 003284 3 EKQLIVAVEGTAAMG---PYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWT----- 74 (834)
Q Consensus 3 ~~dvVFVID~Tasmg---~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfT----- 74 (834)
..|||||||+++||. .-|+.+|.- +.-+++.|.. ..+++||.|.+... ..+++|
T Consensus 77 ~~dvv~VLD~SGSM~~~~~rl~~ak~a-~~~ll~~L~~-----------~drv~lV~Fs~~a~------~~~p~t~~l~~ 138 (464)
T 4fx5_A 77 ENVEVIIIDCSGSMDYPRTKMMAAKEA-TKVAIDTLTD-----------GAFFAVVAGTEGAR------VVYPTGGQLLR 138 (464)
T ss_dssp CEEEEEEEECCGGGGTTTHHHHHHHHH-HHHHHHHSCT-----------TCEEEEEEESSSEE------EEESSSSSCEE
T ss_pred CceEEEEEEcCcccCCCCchHHHHHHH-HHHHHHhCCC-----------CCEEEEEEEcCceE------EEecCCccccc
Confidence 379999999999997 446666644 5666666642 35899999987632 233433
Q ss_pred ---CCHHHHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCC
Q 003284 75 ---KDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPH 138 (834)
Q Consensus 75 ---sd~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~ 138 (834)
.|...+..+|++|...|| -.+.+||..|+.+|... ....|++|||+|-.+.
T Consensus 139 ~~~~~~~~l~~~I~~L~~~Gg----T~l~~aL~~A~~~l~~~---------~~~~~~IILLTDG~~~ 192 (464)
T 4fx5_A 139 ADYQSRAAAKEAVGRLHANGG----TAMGRWLAQAGRIFDTA---------PSAIKHAILLTDGKDE 192 (464)
T ss_dssp CSHHHHHHHHHHHHTCCCCSC----CCHHHHHHHHHHHHTTC---------TTSEEEEEEEESSCCT
T ss_pred CCHHHHHHHHHHHHcCCCCCC----CcHHHHHHHHHHHHhcC---------CCCCCEEEEEcCCCCC
Confidence 688899999999996443 56889999999988641 1345899999998664
No 31
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=97.94 E-value=0.0001 Score=85.07 Aligned_cols=137 Identities=16% Similarity=0.261 Sum_probs=87.7
Q ss_pred ccEEEEEeccccchH-------hHHHHHHHHHHHHHHHH-hccccccccCCCCccEEEEEEeecCCC---------Cccc
Q 003284 4 KQLIVAVEGTAAMGP-------YWQSIVSDYLEKIIRCF-CVNELAGQKTSASNVELSLVTFNTHGS---------YCAC 66 (834)
Q Consensus 4 ~dvVFVID~Tasmg~-------yi~~lkt~YI~p~le~f-~~g~~~~~~~~~~~~~~gLVvY~d~~~---------~~~~ 66 (834)
-+||||||.+.+|.. .|+.++. ++.-+++.. .. ...-++|||+|++... |...
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~-~i~~~i~~ki~~---------~~~D~vGlv~f~~~~~~~plt~d~~y~~i 77 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKK-VITMFVQRQVFA---------ENKDEIALVLFGTDGTDNPLSGGDQYQNI 77 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHH-HHHHHHHHHHHT---------TCCCEEEEEEESCSSCBSTTCTTTCSTTE
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHH-HHHHHHHHHhcC---------CCCCEEEEEEEccCCCCCccccccCCCce
Confidence 689999999999974 5666663 455555531 11 1246999999998753 1111
Q ss_pred ceeeccCC-CCHHHHHHHhcc-CccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecC-CCCCCCCC
Q 003284 67 LVQRSGWT-KDVDIFLHWLST-IPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAAS-NPHPLPTP 143 (834)
Q Consensus 67 lv~~~gfT-sd~~~fl~~Ld~-I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~S-pP~~lp~p 143 (834)
.+. ...+ .+...+ ..|+. |. +|....++.+||..|+.+|..... ......|++||++|. .|+. .
T Consensus 78 ~vl-~~l~~~~~~~l-~~l~~~l~---~~~~~t~i~~al~~A~~~l~~~~~-----~~k~~~krIiLlTDg~~~~~---~ 144 (565)
T 1jey_B 78 TVH-RHLMLPDFDLL-EDIESKIQ---PGSQQADFLDALIVSMDVIQHETI-----GKKFEKRHIEIFTDLSSRFS---K 144 (565)
T ss_dssp EEE-EEEECCCHHHH-HHHHTTCC---CCSSCCCHHHHHHHHHHHHHHHSS-----SSCCSEEEEEEECCCCSCCC---C
T ss_pred EEe-ecCCCCCHHHH-HHHHhhcc---CCCccccHHHHHHHHHHHHHHHhh-----cccccccEEEEEeCCCCCCC---H
Confidence 111 2222 344444 44555 64 232456799999999999964210 011235899999975 3431 0
Q ss_pred cccCCccccccccchhhhhhccCCCHHHHHHHHhhcCcEEE-Ee
Q 003284 144 VYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLS-VI 186 (834)
Q Consensus 144 v~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LS-vI 186 (834)
.+++.+|+.+.+.||.|+ +|
T Consensus 145 -----------------------~~~~~~a~~l~~~gI~i~~vi 165 (565)
T 1jey_B 145 -----------------------SQLDIIIHSLKKCDISLQFFL 165 (565)
T ss_dssp -----------------------TTHHHHHHHHHHTTEEEEEEE
T ss_pred -----------------------HHHHHHHHHHHhcCcEEEEEe
Confidence 267899999999999999 55
No 32
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=97.91 E-value=2.3e-05 Score=81.91 Aligned_cols=93 Identities=13% Similarity=0.210 Sum_probs=70.6
Q ss_pred CccEEEEEeccccchHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHHHH
Q 003284 3 EKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLH 82 (834)
Q Consensus 3 ~~dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~fl~ 82 (834)
..||||+||+++||++-|+.+|.- |.-++..|..+ ..+.|+|||.|++... +..+...+||++. .+..
T Consensus 134 ~~~vvfLVDtSgSM~~kl~~vk~a-l~~Ll~sl~~~--------~~~~~VavV~F~~~~~--~~~~ll~pfT~~~-~~~~ 201 (242)
T 3rag_A 134 ALHLVVCLDTSASMRDKIPTVREA-VRDLALSLKVR--------SGPLAVSVIAFPGKGE--EATRLVQPFSSEV-NVAA 201 (242)
T ss_dssp CEEEEEEEECSGGGTTTHHHHHHH-HHHHHHHHTTS--------SSCEEEEEEEESCSTT--CSCEEEEEEESSC-CHHH
T ss_pred CCCEEEEEECcccHHHHHHHHHHH-HHHHHHHHhcc--------CCCcEEEEEEECCCCc--cceeecCCCCChH-HHHH
Confidence 479999999999999999999965 77777777532 1368999999998854 2222234899988 8888
Q ss_pred HhccCccCCCCCchhhHHHHHHHHHhhcc
Q 003284 83 WLSTIPFAGGGFNDAAIAEGLSEALMMFS 111 (834)
Q Consensus 83 ~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~ 111 (834)
+|+.|.. ||+- + +.+||..|+.+|+
T Consensus 202 ~l~~L~a-gG~T-p--lg~AL~~A~~~~~ 226 (242)
T 3rag_A 202 LEAELVA-RGGT-P--TGPAIDHAADLLL 226 (242)
T ss_dssp HHHHCCC-CSCC-C--HHHHHHHHHHHHH
T ss_pred HHhhCCC-CCCC-c--HHHHHHHHHHHHH
Confidence 9999975 4542 2 7778888888885
No 33
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=97.73 E-value=0.00024 Score=82.98 Aligned_cols=148 Identities=18% Similarity=0.178 Sum_probs=88.9
Q ss_pred CCcc-EEEEEeccccchH--------hHHHHHHHHHHHHHHH-HhccccccccCCCCccEEEEEEeecCCC-----Cccc
Q 003284 2 SEKQ-LIVAVEGTAAMGP--------YWQSIVSDYLEKIIRC-FCVNELAGQKTSASNVELSLVTFNTHGS-----YCAC 66 (834)
Q Consensus 2 ~~~d-vVFVID~Tasmg~--------yi~~lkt~YI~p~le~-f~~g~~~~~~~~~~~~~~gLVvY~d~~~-----~~~~ 66 (834)
+.|| ||||||.+.+|.. .|+.++. +|.-+|.. +.. ...-++|||+|++... ++..
T Consensus 33 ~~ke~ivf~IDvS~SM~~~d~~~~~srl~~a~~-~v~~~i~~kii~---------~~~D~vGlVlfgt~~t~n~l~~d~i 102 (609)
T 1jey_A 33 SGRDSLIFLVDASKAMFESQSEDELTPFDMSIQ-CIQSVYISKIIS---------SDRDLLAVVFYGTEKDKNSVNFKNI 102 (609)
T ss_dssp -CEEEEEEEEECSGGGGCCCSSSSCCHHHHHHH-HHHHHHHHHHHT---------TCCCEEEEEEESCSSCBSTTCCTTE
T ss_pred cCceEEEEEEECCHHHcCCCCCCCCChHHHHHH-HHHHHHHHhhCC---------CCCCeEEEEEEccCCCCCcCCCCCe
Confidence 3456 9999999999976 5666664 33333332 111 1236999999999873 3332
Q ss_pred ceeeccC-CCCHHHHHHHhccCc---------cCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecC-
Q 003284 67 LVQRSGW-TKDVDIFLHWLSTIP---------FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAAS- 135 (834)
Q Consensus 67 lv~~~gf-Tsd~~~fl~~Ld~I~---------f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~S- 135 (834)
++.. .+ .-+.+.+..+.+-+. ..|. ....++.+||..|+.+|.... .....|.+|||+|.
T Consensus 103 ~v~~-~L~~~~~~~ik~l~~l~~~~~~~~~~~~~g~-~~~t~l~daL~~a~~~f~~~~-------~k~~~k~IiL~TDg~ 173 (609)
T 1jey_A 103 YVLQ-ELDNPGAKRILELDQFKGQQGQKRFQDMMGH-GSDYSLSEVLWVCANLFSDVQ-------FKMSHKRIMLFTNED 173 (609)
T ss_dssp EEEE-EEECCCHHHHHHHHTTSHHHHHHHHHHHHCC-SCCCCHHHHHHHHHHHHHTCS-------SCEEEEEEEEEESCS
T ss_pred EEEe-cCCCCCHHHHHHHHHHhhcccchhhhhhcCC-CCCCCHHHHHHHHHHHHHhhc-------hhhcCCEEEEEcCCC
Confidence 3332 22 124443333332221 1232 235789999999999996421 12247899999985
Q ss_pred CCCCCCCCcccCCccccccccchhhhhhccCCCHHHHHHHHhhcCcEEEEeccC
Q 003284 136 NPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPK 189 (834)
Q Consensus 136 pP~~lp~pv~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPr 189 (834)
+|+.-- . .. ..+++.+|+.+.+.||.|.+|--.
T Consensus 174 ~p~~~~-~-----------------~~---~~~~~~~a~~l~~~gI~i~~igig 206 (609)
T 1jey_A 174 NPHGND-S-----------------AK---ASRARTKAGDLRDTGIFLDLMHLK 206 (609)
T ss_dssp CTTTTC-H-----------------HH---HHHHHHHHHHHHHHTEEEEEEEBC
T ss_pred CCCCCc-h-----------------HH---HHHHHHHHHHHHhcCcEEEEEecC
Confidence 444210 0 00 014689999999999999999543
No 34
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=97.04 E-value=0.0022 Score=78.06 Aligned_cols=118 Identities=13% Similarity=0.152 Sum_probs=71.4
Q ss_pred ccEEEEEeccccchHhH-------HHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCC----------cc-
Q 003284 4 KQLIVAVEGTAAMGPYW-------QSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSY----------CA- 65 (834)
Q Consensus 4 ~dvVFVID~Tasmg~yi-------~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~----------~~- 65 (834)
+|||||||.++||...+ +.+| +-+..+|+.|... ...|+|||.|.+..-. .+
T Consensus 225 ~DIVfVLD~SGSM~~~~~~~~~Rl~~~K-~a~~~~ld~L~~~---------~~drVgLV~Fs~~a~~~~~~~v~~~~~~~ 294 (893)
T 2ww8_A 225 LDVVILLDNSNSMSNIRNKNARRAERAG-EATRSLIDKITSD---------SENRVALVTYASTIFDGTEFTVEKGVADK 294 (893)
T ss_dssp EEEEEEEECCGGGCTTHHHHCCHHHHHH-HHHHHHHHHHHTS---------TTCEEEEEEESSSBCBSCEEEEECCEECT
T ss_pred ccEEEEEeCCCCCCCcCccchhHHHHHH-HHHHHHHHHhhcC---------CCcEEEEEEecCccccccccccccccccc
Confidence 79999999999998764 2233 3355556655321 2479999999974210 00
Q ss_pred ---------------c-ce---e---eccCCCCHHHHH---HHhccCcc--CCC-C---CchhhHHHHHHHHHhhcccCC
Q 003284 66 ---------------C-LV---Q---RSGWTKDVDIFL---HWLSTIPF--AGG-G---FNDAAIAEGLSEALMMFSVAP 114 (834)
Q Consensus 66 ---------------~-lv---~---~~gfTsd~~~fl---~~Ld~I~f--~GG-G---~~~~AvaEGLa~AL~~f~~~~ 114 (834)
. +. . ..+||.|...+. ..|+.+.- .|- + ...-++.+||..|+++|+...
T Consensus 295 ~g~~~n~~~~w~~~~t~~t~~~~~~~~lpLT~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL~~~~ 374 (893)
T 2ww8_A 295 NGKRLNDSLFWNYDQTSFTTNTKDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQA 374 (893)
T ss_dssp TCCEECCCTTSCTTCCEEEEECCBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHHHS
T ss_pred cccccccccccccccccccccccccccccccCCHHHHHHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHHHhhc
Confidence 0 00 0 125678886665 45544321 110 0 113568899999999986311
Q ss_pred CCCCCCCCccCCcEEEEeecCCCC
Q 003284 115 NGSQNQQNVDGQRHCILVAASNPH 138 (834)
Q Consensus 115 ~~~~~~~~~~~qkhCILIa~SpP~ 138 (834)
.....|++|||+|--|.
T Consensus 375 -------~~~~~kvIILLTDG~pt 391 (893)
T 2ww8_A 375 -------RQNSQKVIFHITDGVPT 391 (893)
T ss_dssp -------CSSSEEEEEEEESSCCS
T ss_pred -------ccCCCeEEEEEcCCCCC
Confidence 12356899999998775
No 35
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=95.07 E-value=0.088 Score=60.32 Aligned_cols=98 Identities=13% Similarity=0.070 Sum_probs=55.3
Q ss_pred CccEEEEEeccccchHh-----HHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCC--C
Q 003284 3 EKQLIVAVEGTAAMGPY-----WQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWT--K 75 (834)
Q Consensus 3 ~~dvVFVID~Tasmg~y-----i~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfT--s 75 (834)
..+|+||||.++||... +.. +.--+.-.+..+.. +-+++||+|.+. + ...++| .
T Consensus 368 ~~~v~lvvD~SgSM~~~~~~~~l~~-~~~Aa~l~~~~~~~-----------~d~vglv~Fs~~--~-----~~~~~t~~~ 428 (538)
T 1yvr_A 368 GKRFLLAIDVSASMNQRVLGSILNA-SVVAAAMCMLVART-----------EKDSHMVAFSDE--M-----LPCPITVNM 428 (538)
T ss_dssp CCCEEEEEECSGGGGSBSTTSSCBH-HHHHHHHHHHHHHH-----------CSSEEEEEESSS--E-----ECCSCCTTS
T ss_pred CceEEEEEECccccCCCCCCCcHHH-HHHHHHHHHHHhcc-----------CCceEEEEECCC--c-----eEcCCCCcc
Confidence 37999999999999742 111 11100111111211 247999999863 1 122333 3
Q ss_pred CHHHHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCC
Q 003284 76 DVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNP 137 (834)
Q Consensus 76 d~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP 137 (834)
++..++..|+.+ .||| -++.+||..|+..- ...+.+|||+|--.
T Consensus 429 ~l~~~l~~l~~~--~~Gg---T~i~~aL~~a~~~~-------------~~~~~iIliTDg~~ 472 (538)
T 1yvr_A 429 LLHEVVEKMSDI--TMGS---TDCALPMLWAQKTN-------------TAADIFIVFTDCET 472 (538)
T ss_dssp CHHHHHHHHTTC--CCSC---CCTTHHHHHHHHTT-------------CCCSEEEEEECCCC
T ss_pred cHHHHHHHHhcC--CCCC---CcHHHHHHHHHhcc-------------CCCCEEEEEcCCCC
Confidence 466666677654 3444 33456777777641 12478999997644
No 36
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=95.00 E-value=0.0047 Score=68.02 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=9.2
Q ss_pred HHHHHHHhhc-CcEEEEec
Q 003284 170 ETVAKSFVQC-SVSLSVIC 187 (834)
Q Consensus 170 e~lA~~~~e~-~I~LSvIs 187 (834)
+.++++|.|+ ||+|.++.
T Consensus 21 ~~~~~~F~~~~gi~V~~~~ 39 (449)
T 3iot_A 21 AEVGKKFEKDTGIKVTVEH 39 (449)
T ss_dssp HHHHHHHHHHHSCCEEEEC
T ss_pred HHHHHHHhhccCCEEEEEe
Confidence 4444444433 56666555
No 37
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=94.48 E-value=0.0077 Score=66.30 Aligned_cols=11 Identities=18% Similarity=0.063 Sum_probs=5.7
Q ss_pred HHHHHHHHHhc
Q 003284 27 YLEKIIRCFCV 37 (834)
Q Consensus 27 YI~p~le~f~~ 37 (834)
++..+++.|+.
T Consensus 19 ~~~~~~~~F~~ 29 (449)
T 3iot_A 19 GLAEVGKKFEK 29 (449)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 34455555644
No 38
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=92.56 E-value=1.3 Score=53.51 Aligned_cols=107 Identities=13% Similarity=0.176 Sum_probs=61.9
Q ss_pred HHHhccCc--cCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccc---
Q 003284 81 LHWLSTIP--FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQN--- 155 (834)
Q Consensus 81 l~~Ld~I~--f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~--- 155 (834)
...|+.|. |..+.....|..-||.+|+.+++.. --++|+...++|--=|=. |..-+..
T Consensus 288 ~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~~------------GGrI~~F~sg~pt~GpG~-----l~~r~~~~~~ 350 (810)
T 1pcx_A 288 ETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV------------GGKIIVVSGTLPNLGIGK-----LQRRNESGVV 350 (810)
T ss_dssp HHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTT------------CEEEEEEESSCCCSSTTC-----CCC-------
T ss_pred HHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhc------------CCEEEEEecCCCCCCCCc-----cccccccccc
Confidence 34555553 5555566788999999999988621 136666677776432211 1111111
Q ss_pred ----cchhhhhhccCCCHHHHHHHHhhcCcEEEEeccC----CchhHHHHHHHhcCCC
Q 003284 156 ----ENNEAQAESRLSDAETVAKSFVQCSVSLSVICPK----QLPKLTAIYNAAKRNP 205 (834)
Q Consensus 156 ----e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPr----qlp~l~~Lfeka~~~~ 205 (834)
|+....+... .-.+.||+.+.+.+|.+.+.+-- .+..|+.|-+..+|..
T Consensus 351 ~~~ke~~~l~~~a~-~fY~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v 407 (810)
T 1pcx_A 351 NTSKETAQLLSCQD-SFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQT 407 (810)
T ss_dssp -------------C-CHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCE
T ss_pred Ccccchhhhcccch-HHHHHHHHHHHHCCeEEEEEEccCCccChHHHHHHHhcCCcEE
Confidence 1000111111 12489999999999998877533 3578888988887764
No 39
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=92.55 E-value=1.8 Score=51.89 Aligned_cols=175 Identities=10% Similarity=0.126 Sum_probs=90.7
Q ss_pred EEEEEecccc--chHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCC-------C-----------cc
Q 003284 6 LIVAVEGTAA--MGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGS-------Y-----------CA 65 (834)
Q Consensus 6 vVFVID~Tas--mg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~-------~-----------~~ 65 (834)
.|||||.+.. -..+++.+++. |.-+|+.+-+ ..++++|||+|.+.=- . .+
T Consensus 163 yvFvIDvs~~a~~~g~l~~~~~s-l~~~L~~lp~---------~~~~~VG~ITfd~~vh~y~l~~~~~~~qmlvv~dl~d 232 (751)
T 3eh1_A 163 YLFVLDVSHNAVEAGYLTILCQS-LLENLDKLPG---------DSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDD 232 (751)
T ss_dssp EEEEEECSHHHHHHTHHHHHHHH-HHHHTTTSSC---------CTTCEEEEEEESSSEEEEECCTTCSSCEEEEESCTTC
T ss_pred EEEEEEccHhhhhhhHHHHHHHH-HHHHHHhcCC---------CcCcEEEEEEeCCEEEEEECCCCcccceeeccccccc
Confidence 5999998852 22345555533 2223332211 1468999999987311 0 00
Q ss_pred ccee-eccC----CCCHHHHHHHhccCc--cCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCC
Q 003284 66 CLVQ-RSGW----TKDVDIFLHWLSTIP--FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPH 138 (834)
Q Consensus 66 ~lv~-~~gf----Tsd~~~fl~~Ld~I~--f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~ 138 (834)
..+- ..+| ...-+.+...|+.|. |..+.....|..-||.+|+.++... --++++...++|-
T Consensus 233 ~f~P~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~~~~~~~~~G~AL~aA~~ll~~~------------GGrI~~F~sg~pt 300 (751)
T 3eh1_A 233 VFLPTPDSLLVNLYESKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSPT------------GGRVSVFQTQLPS 300 (751)
T ss_dssp TTSCCGGGTSEETTTTHHHHHHHHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTTT------------CEEEEEEECSCCC
T ss_pred cCCCChhhhcccHHHHHHHHHHHHHhhhHhhcCCCCCccchHHHHHHHHHHhhcC------------CCEEEEEecCCCC
Confidence 0000 0122 222333444566654 4444455688999999999988521 1355555566654
Q ss_pred CCC-CCccc--CCccccccccchhhhhhccCCCHHHHHHHHhhcCcEEEEec--cC--CchhHHHHHHHhcCCC
Q 003284 139 PLP-TPVYR--PQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVIC--PK--QLPKLTAIYNAAKRNP 205 (834)
Q Consensus 139 ~lp-~pv~~--p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIs--Pr--qlp~l~~Lfeka~~~~ 205 (834)
-=| .-+-+ +.+ ..+.|..+..+... .=.+.||+.+.+.+|.+.+.+ .. .+..|+.|-+..+|..
T Consensus 301 ~GpG~l~~r~~~~~--~~~~ke~~~~~~a~-~fY~~la~~~~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~v 371 (751)
T 3eh1_A 301 LGAGLLQSREDPNQ--RSSTKVVQHLGPAT-DFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCI 371 (751)
T ss_dssp SSTTCCCCCCCSCG--GGGSSSCTTCSCSC-SHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCE
T ss_pred CCCCcccccccccc--CCCchhhhhhcchH-HHHHHHHHHHHhcCceEEEEEccCcccChHhHHHHHhhcCceE
Confidence 222 11100 000 00001001111111 125899999999998877654 33 3578888888887774
No 40
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=92.32 E-value=0.66 Score=55.73 Aligned_cols=110 Identities=9% Similarity=0.014 Sum_probs=63.0
Q ss_pred HHhccCcc-----CCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCcccccccc
Q 003284 82 HWLSTIPF-----AGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNE 156 (834)
Q Consensus 82 ~~Ld~I~f-----~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e 156 (834)
..|+.|+- ..+.....|...||.+|+.+++... ...--++++...++|-.=|-. |...+.+|
T Consensus 246 ~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~--------~~~GGrI~~F~sg~pt~GpG~-----l~~r~~~~ 312 (769)
T 2nut_A 246 DLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTF--------PNTGARIMMFIGGPATQGPGM-----VVGDELKT 312 (769)
T ss_dssp HHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHS--------CSSCCEEEEEESSCCCSSSSC-----CSCSBTTS
T ss_pred HHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcc--------cCCCcEEEEEeCCCCCCCCCC-----CcCccccc
Confidence 45666643 3333445789999999999886311 112345666666776432211 11112211
Q ss_pred c-----------hhhhhhccCCCHHHHHHHHhhcCcEEEEeccC----CchhHHHHHHHhcCCC
Q 003284 157 N-----------NEAQAESRLSDAETVAKSFVQCSVSLSVICPK----QLPKLTAIYNAAKRNP 205 (834)
Q Consensus 157 ~-----------~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPr----qlp~l~~Lfeka~~~~ 205 (834)
. .++.+... .-.+.+|+.+.+.+|.+.+.+-- .+..|+.|-+..+|.-
T Consensus 313 ~~rs~~d~~ke~~~~~~~a~-~fY~~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~~ 375 (769)
T 2nut_A 313 PIRSWHDIDKDNAKYVKKGT-KHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYM 375 (769)
T ss_dssp CCCCHHHHHTTCCTTHHHHH-HHHHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCCE
T ss_pred ccccccccccchhhhccchH-HHHHHHHHHHHHCCeEEEEEeccCCccChHHHHHHhhcCCceE
Confidence 1 11111111 01478999999999999887543 2588899988888764
No 41
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=92.26 E-value=1 Score=55.32 Aligned_cols=109 Identities=13% Similarity=0.167 Sum_probs=64.3
Q ss_pred HHHHHhccCc--cCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCccccccc-
Q 003284 79 IFLHWLSTIP--FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQN- 155 (834)
Q Consensus 79 ~fl~~Ld~I~--f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~- 155 (834)
.+...|+.|. |..+.....|..-||.+|+.+++.. --++|+...++|--=|=. |..-+..
T Consensus 402 ~I~~lLe~L~~~~~~~~~~~~~~G~AL~aA~~lL~~~------------GGrI~~F~sg~Pt~GpG~-----l~~re~~~ 464 (926)
T 1m2v_B 402 NIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV------------GGKIIVVSGTLPNLGIGK-----LQRRNESG 464 (926)
T ss_dssp HHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTTT------------CEEEEEEESSCCCSSTTC-----CCCCCC--
T ss_pred HHHHHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHhh------------CCEEEEEecCCCCCCCCc-----cccccccc
Confidence 3344555553 5555566788999999999988621 235666666666422211 1111111
Q ss_pred ------cchhhhhhccCCCHHHHHHHHhhcCcEEEEeccC----CchhHHHHHHHhcCCC
Q 003284 156 ------ENNEAQAESRLSDAETVAKSFVQCSVSLSVICPK----QLPKLTAIYNAAKRNP 205 (834)
Q Consensus 156 ------e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPr----qlp~l~~Lfeka~~~~ 205 (834)
|+.+..+... .-.+.||+.|.+.+|.+.+.+-. .+..|+.|.+..+|..
T Consensus 465 ~~~~~ke~~~ll~~a~-~FYk~LA~~~~~~gisVDlF~~s~~~vdla~l~~l~~~TGG~v 523 (926)
T 1m2v_B 465 VVNTSKETAQLLSCQD-SFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQT 523 (926)
T ss_dssp --CCTTHHHHHTSCSS-THHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCE
T ss_pred ccCcccchhhhccchH-HHHHHHHHHHHHcCeEEEEEEccCCCcChHHHHHHHhcCCceE
Confidence 1100111111 12589999999999998877533 3688888988887764
No 42
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=89.96 E-value=2 Score=51.60 Aligned_cols=110 Identities=10% Similarity=0.086 Sum_probs=62.7
Q ss_pred HHhccCcc-----CCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCcccccccc
Q 003284 82 HWLSTIPF-----AGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNE 156 (834)
Q Consensus 82 ~~Ld~I~f-----~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e 156 (834)
..|+.|+- ..+.....|..-||.+|+.+++... ...--++++...++|--=|=. |.+-+..|
T Consensus 240 ~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~--------~~~GGrI~~F~sg~pt~GpG~-----l~~r~~~~ 306 (768)
T 1m2o_A 240 QLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCY--------KNIPARIILFASGPGTVAPGL-----IVNSELKD 306 (768)
T ss_dssp HHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHHHC--------TTSCCEEEEEESSCCCSSSSC-----CSCSBTTS
T ss_pred HHHHhccccccccCCCCCCcccHHHHHHHHHHHHhhcc--------CCCCcEEEEEeCCCCCCCCcc-----cccccccc
Confidence 45666653 2333345688899999998886211 112245666666676432211 11111111
Q ss_pred -----------chhhhhhccCCCHHHHHHHHhhcCcEEEEeccC----CchhHHHHHHHhcCCC
Q 003284 157 -----------NNEAQAESRLSDAETVAKSFVQCSVSLSVICPK----QLPKLTAIYNAAKRNP 205 (834)
Q Consensus 157 -----------~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPr----qlp~l~~Lfeka~~~~ 205 (834)
+.++.+... .-.+.||+.+.+.+|.+.+.+-- .+..|+.|-+..+|..
T Consensus 307 ~~rs~~d~~k~~~~~~~~a~-~fY~~la~~~~~~gi~VDlF~~~~~~~dla~l~~l~~~TGG~v 369 (768)
T 1m2o_A 307 PLRSHHDIDSDHAQHYKKAC-KFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVL 369 (768)
T ss_dssp CCCCHHHHHHTCCTTHHHHH-HHHHHHHHHHHHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCE
T ss_pred ccccccccccchhhhcCchH-HHHHHHHHHHHHCCeEEEEEEccCCccChHHHhhHhhcCCceE
Confidence 111111111 12389999999999998877533 3588999999888764
No 43
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=88.00 E-value=2.1 Score=49.09 Aligned_cols=129 Identities=10% Similarity=0.071 Sum_probs=65.9
Q ss_pred CccEEEEEeccccchH-hHHH---H-HHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCH
Q 003284 3 EKQLIVAVEGTAAMGP-YWQS---I-VSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDV 77 (834)
Q Consensus 3 ~~dvVFVID~Tasmg~-yi~~---l-kt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~ 77 (834)
+.+++++||.++||.. .... + +.+ +--.+.+.... .+-+++||+|.+. + ....++.+
T Consensus 362 ~~~~lv~vDvSgSM~~~~~~~~~k~~~~e-~Aa~la~~~~r---------~~d~v~lv~Fs~~--~-----~~~~~~~~- 423 (535)
T 2nvo_A 362 NTRHLLALDVSGSMTCGDVAGVPGLTPNM-AAAAMSLIALR---------TEPDALTMGFAEQ--F-----RPLGITPR- 423 (535)
T ss_dssp CSEEEEEECCSGGGGSCCGGGCTTCCHHH-HHHHHHHHHHH---------HSSEEEEEEEBSS--E-----EECCCCTT-
T ss_pred CceEEEEEECCccccCCCCCCCCcccHHH-HHHHHHHHHcC---------cCCceEEEEECCc--c-----eEcCCCcc-
Confidence 3789999999999974 2110 0 111 11122222110 1248999999773 1 12234433
Q ss_pred HHHHHHhccCccC-CCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCCcccCCcccccccc
Q 003284 78 DIFLHWLSTIPFA-GGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNE 156 (834)
Q Consensus 78 ~~fl~~Ld~I~f~-GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~pv~~p~~~~~~~~e 156 (834)
+.++..|+.|... |||-. +..+|..|.... ...+.+|||+|-.-..-.
T Consensus 424 ~~l~~~l~~l~~~~~ggTd---i~~~l~~a~~~~-------------~~~~~vIliTD~~~~~g~--------------- 472 (535)
T 2nvo_A 424 DTLESAMQKAQSVSFGGTD---CAQPILWAAQER-------------LDVDTFVVYTDNETWAGQ--------------- 472 (535)
T ss_dssp CCHHHHHHHTCCSSBCCCC---TTHHHHHHHHTT-------------CCCSEEEEEESSCCCCCS---------------
T ss_pred hhHHHHHHHHhhCCCCCcc---HHHHHHHHHHhc-------------CCCCEEEEEeCCCccCCC---------------
Confidence 3344444444332 44432 222344443321 123678999875332110
Q ss_pred chhhhhhccCCCHHHHHHHHhhc---CcEEEEeccCC
Q 003284 157 NNEAQAESRLSDAETVAKSFVQC---SVSLSVICPKQ 190 (834)
Q Consensus 157 ~~~~~~~~~l~d~e~lA~~~~e~---~I~LSvIsPrq 190 (834)
.++++.++.+.++ +++|.+|.-..
T Consensus 473 ----------~~~~~al~~~r~~~~~~~klv~i~l~~ 499 (535)
T 2nvo_A 473 ----------VHPTVALDQYAQKMGRAPKLIVVGLTA 499 (535)
T ss_dssp ----------SCHHHHHHHHHHHHSCCCEEEEEETTC
T ss_pred ----------CCHHHHHHHHHHhhCCCCeEEEEeccC
Confidence 1345566777766 78898886554
No 44
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=85.91 E-value=9.4 Score=45.86 Aligned_cols=181 Identities=14% Similarity=0.180 Sum_probs=89.2
Q ss_pred EEEEEeccccc--hHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCC---------Cc---------c
Q 003284 6 LIVAVEGTAAM--GPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGS---------YC---------A 65 (834)
Q Consensus 6 vVFVID~Tasm--g~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~---------~~---------~ 65 (834)
.|||||.+..- ..+++.+++. |.-+|+.+-. +.....++.++|||+|...=- .+ +
T Consensus 176 y~FvIDvs~~av~sg~l~~~~~s-i~~~L~~lp~----~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~~vv~dl~d 250 (766)
T 3eh2_A 176 FIFMIDVSYNAIRTGLVRLLCEE-LKSLLDFLPR----EGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDVAD 250 (766)
T ss_dssp EEEEEECSHHHHHTTHHHHHHHH-HHHHGGGCCC----CSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEEECCTTT
T ss_pred EEEEEECchhhccchHHHHHHHH-HHHHHHhCCc----ccccCCccceEEEEEeCCEEEEEECCCCCCCceEEEecChhh
Confidence 58999998421 1244444433 3333333311 101112468999999976411 01 1
Q ss_pred ccee-eccCCCCH----HHHHHHhccCc--cCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCC
Q 003284 66 CLVQ-RSGWTKDV----DIFLHWLSTIP--FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPH 138 (834)
Q Consensus 66 ~lv~-~~gfTsd~----~~fl~~Ld~I~--f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~ 138 (834)
.++- ..+|.-++ +.+...|+.|+ |..-...+.+++-+|++|+.++... ..--++++...+.|-
T Consensus 251 ~f~P~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~----------~~GGkI~~F~s~lP~ 320 (766)
T 3eh2_A 251 MFVPLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAA----------ECAGKLFLFHTSLPI 320 (766)
T ss_dssp CCCCCCTTSSBCTTTTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHT----------TCCEEEEEEECSCCC
T ss_pred hccccccceeEeHHHHHHHHHHHHHhhhhhccCCCCCcchHHHHHHHHHHHhccC----------CCCcEEEEEecCCCC
Confidence 1110 11232222 23333455553 3222234567778888888776421 112455555566554
Q ss_pred --CCCCCccc---CCccccccccchhhhhhccCCCHHHHHHHHhhcCcEEEEec--cC--CchhHHHHHHHhcCCC
Q 003284 139 --PLPTPVYR---PQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVIC--PK--QLPKLTAIYNAAKRNP 205 (834)
Q Consensus 139 --~lp~pv~~---p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIs--Pr--qlp~l~~Lfeka~~~~ 205 (834)
+-..-+-+ ..+.+ .+|+ +..+... .=.+.||+.+.+.+|.+.+.+ .. .+..|+.|.+..+|..
T Consensus 321 t~GpG~l~~r~~~~~~~s--dke~-~~~~~a~-~fY~~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v 392 (766)
T 3eh2_A 321 AEAPGKLKNRDDRKLINT--DKEK-TLFQPQT-GAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSV 392 (766)
T ss_dssp SSSTTCCCCCCCGGGTTS--TTGG-GGTSCSS-THHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCE
T ss_pred cCCCcccccccccccCCC--cchh-hhccchH-HHHHHHHHHHHhCCeEEEEEEecCCCcChHHHHHHHhhcCceE
Confidence 33321111 00000 1111 1222221 234899999999998777654 33 3588888888888764
No 45
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=83.96 E-value=11 Score=45.34 Aligned_cols=181 Identities=14% Similarity=0.219 Sum_probs=89.6
Q ss_pred EEEEEecccc-c-hHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCC------------------cc
Q 003284 6 LIVAVEGTAA-M-GPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSY------------------CA 65 (834)
Q Consensus 6 vVFVID~Tas-m-g~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~------------------~~ 65 (834)
.|||||.+.. . ..+++.+++. |.-+|+.+-. + .....++.++|||+|...=-+ .+
T Consensus 180 y~FvIDvs~~av~sg~l~~~~~s-l~~~L~~lP~---~-~~~~~~~~~VG~ITfd~~vh~y~l~~~~~q~q~~vv~d~~d 254 (770)
T 3efo_B 180 FIFMIDVSYSNIKNGLVKLICEE-LKTMLEKIPK---E-EQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDVGE 254 (770)
T ss_dssp EEEEEECSHHHHHTTHHHHHHHH-HHHHGGGCCC---C-TTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEECCTTS
T ss_pred EEEEEEcchhhccchHHHHHHHH-HHHHHHhCCc---c-ccccCccceEEEEEeCCEEEEEeCCCcccCceEEEeccccc
Confidence 6899998752 2 2355555544 3334443321 1 111124689999999764110 01
Q ss_pred ccee-eccCCCCH----HHHHHHhccCc--cCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCC
Q 003284 66 CLVQ-RSGWTKDV----DIFLHWLSTIP--FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPH 138 (834)
Q Consensus 66 ~lv~-~~gfTsd~----~~fl~~Ld~I~--f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~ 138 (834)
.++- ..+|.-++ +.+...|+.|+ |..-...+.+++-+|++|+.++... ..--++++...+.|-
T Consensus 255 ~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~----------~~GGkI~~F~s~lP~ 324 (770)
T 3efo_B 255 VFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAA----------DCPGKLFIFHSSLPT 324 (770)
T ss_dssp CCCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHH----------TCCEEEEEEECSCCC
T ss_pred ccCCCccceeeeHHHHHHHHHHHHHhhHhhccCCCCCcchHHHHHHHHHHHhccC----------CCCcEEEEEecCCCC
Confidence 1100 01222222 22333444442 3333344666777888888776420 012355555555454
Q ss_pred --CCCCCccc---CCccccccccchhhhhhccCCCHHHHHHHHhhcCcEEEEec--cCC--chhHHHHHHHhcCCC
Q 003284 139 --PLPTPVYR---PQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVIC--PKQ--LPKLTAIYNAAKRNP 205 (834)
Q Consensus 139 --~lp~pv~~---p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIs--Prq--lp~l~~Lfeka~~~~ 205 (834)
.-..-+-+ ..+.+ .+|. +..+... .=.+.||+.|.+.+|.+.+.+ ... +..|+.|.+..+|..
T Consensus 325 t~GpG~l~~r~~~~~~~t--~ke~-~~~~~a~-~fY~~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v 396 (770)
T 3efo_B 325 AEAPGKLKNRDDKKLVNT--DKEK-ILFQPQT-NVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTL 396 (770)
T ss_dssp SSSTTCCCCCCCCCCSSC--SCGG-GGGSCSS-SHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCE
T ss_pred cCCCccccccccccccCC--cchh-hhhcchH-HHHHHHHHHHHHcCeEEEEEEecCCccChHHHHHHHhhcCceE
Confidence 22221100 00111 1111 1222211 235899999999998877654 332 578888888888764
No 46
>1yco_A Branched-chain phosphotransacylase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.40A {Enterococcus faecalis}
Probab=32.67 E-value=33 Score=36.26 Aligned_cols=92 Identities=8% Similarity=0.001 Sum_probs=62.0
Q ss_pred cEEEEEeccccchHhHHHHHHHHHHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCCCHHHHHHHh
Q 003284 5 QLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWL 84 (834)
Q Consensus 5 dvVFVID~Tasmg~yi~~lkt~YI~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTsd~~~fl~~L 84 (834)
..+|+.|+.++..+..+.|. ++..-..+|.+. ++-...++||+.|..... ....-|.++.+.++.|
T Consensus 112 ~~~~l~D~g~N~~p~~e~l~-~ia~~a~~~a~~-------lGi~~PkVAlLs~~~~g~------~~~~~~~~a~~l~k~l 177 (279)
T 1yco_A 112 KTFLLTDCAMNIAPTQATLI-EIVENAKEVAQK-------LGLHHPKIALLSAAENFN------PKMPSSVLAKEVTAHF 177 (279)
T ss_dssp CEEEEECSSSCSSCCHHHHH-HHHHHHHHHHHH-------TTCSSCEEEEECSCSSCC------TTCHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCCCHHHHH-HHHHHHHHHHHH-------hCCCCCeEEEEeccccCC------CCChHHHHHHHHHHHH
Confidence 46899999999999988887 667777888754 222368999999986654 2445567778887766
Q ss_pred cc---CccCCCCCchhhHHHHHHHHHhhc
Q 003284 85 ST---IPFAGGGFNDAAIAEGLSEALMMF 110 (834)
Q Consensus 85 d~---I~f~GGG~~~~AvaEGLa~AL~~f 110 (834)
+. +.|.|-=..++|+.+-.++--..+
T Consensus 178 ~~~~~~~~dG~i~~D~A~~~~~~~~k~~~ 206 (279)
T 1yco_A 178 NDQQEATVFGPLSLDLATSEEAVAHKRYS 206 (279)
T ss_dssp SSCSSCEEEEEECHHHHHCHHHHHHTTCC
T ss_pred HhCCCCEEEeeCcHHhhcCHHHHHhcCCC
Confidence 65 344433334566666655544333
No 47
>4ex8_A ALNA; alpha/beta/alpha-domain, C-glycosynthase, divalent metal ION ligase; 2.10A {Streptomyces SP} PDB: 4ex9_A*
Probab=27.89 E-value=44 Score=36.10 Aligned_cols=35 Identities=9% Similarity=0.091 Sum_probs=27.5
Q ss_pred HHHHHHHHhccccccccCCCCccEEEEEEeecCCCCcccceeeccCCC
Q 003284 28 LEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTK 75 (834)
Q Consensus 28 I~p~le~f~~g~~~~~~~~~~~~~~gLVvY~d~~~~~~~lv~~~gfTs 75 (834)
|..+|||+.. .-+-+|.|++ |.||.|++..+++..
T Consensus 174 i~~TLE~LET------------~GV~Vvgy~t-d~fPaFy~r~Sg~~~ 208 (316)
T 4ex8_A 174 HRLTAEYLET------------AGVPVYGYRT-DKLAAFVVREADVPV 208 (316)
T ss_dssp HHHHHHHHHH------------TTCCEEEETC-SBCCBTTBSCCSCBC
T ss_pred chHHHHHHHh------------CCceEEEecC-CCCceeeeCCCCCcC
Confidence 5678999954 3456889987 678999999888854
No 48
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=25.49 E-value=92 Score=32.42 Aligned_cols=37 Identities=16% Similarity=0.114 Sum_probs=31.0
Q ss_pred CHHHHHHHHhhcCcEEEEeccC--------CchhHHHHHHHhcCC
Q 003284 168 DAETVAKSFVQCSVSLSVICPK--------QLPKLTAIYNAAKRN 204 (834)
Q Consensus 168 d~e~lA~~~~e~~I~LSvIsPr--------qlp~l~~Lfeka~~~ 204 (834)
|+..+|++++++||++++|--. ....|++|-+.+++.
T Consensus 26 ~p~~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~IA~~tGG~ 70 (242)
T 3rag_A 26 DPVEAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSIADAGGGM 70 (242)
T ss_dssp CHHHHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHCCCEEEEEEecCCccccchhHHHHHHHHHhcCCe
Confidence 7899999999999999999872 146788998887765
No 49
>2i9n_A MHB4A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=22.97 E-value=66 Score=23.09 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=18.8
Q ss_pred hccCccCCCCCc-hhhHHHHHHHHH
Q 003284 84 LSTIPFAGGGFN-DAAIAEGLSEAL 107 (834)
Q Consensus 84 Ld~I~f~GGG~~-~~AvaEGLa~AL 107 (834)
.++|.+.|||.+ -+|-+.-+++|+
T Consensus 6 yngityeggggsaaeayakriaeam 30 (33)
T 2i9n_A 6 YNGITYEGGGGSAAEAYAKRIAEAM 30 (33)
T ss_dssp SSSCBCCSSCCCSTHHHHHHHHHHH
T ss_pred ECCEEeecCCchHHHHHHHHHHHHH
Confidence 368999999876 678777777776
No 50
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=22.66 E-value=2.7e+02 Score=29.78 Aligned_cols=91 Identities=12% Similarity=0.221 Sum_probs=59.1
Q ss_pred ccceeeccCCCCHHHHHHHhccCccCCCCC-chhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCCC
Q 003284 65 ACLVQRSGWTKDVDIFLHWLSTIPFAGGGF-NDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTP 143 (834)
Q Consensus 65 ~~lv~~~gfTsd~~~fl~~Ld~I~f~GGG~-~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~p 143 (834)
+.++-|+.--..+..|-++..+++++=||+ ..++=..+|+..+++.+.... .+ -+++..|+|..
T Consensus 100 D~iviR~~~~~~~~~la~~~~~vPVINag~G~~~HPtQaLaDl~Ti~e~~g~-------l~-gl~va~vGD~~------- 164 (310)
T 3csu_A 100 DAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGR-------LD-NLHVAMVGDLK------- 164 (310)
T ss_dssp SEEEEEESSTTHHHHHHHHCTTCCEEEEEETTSCCHHHHHHHHHHHHHHHSC-------SS-SCEEEEESCTT-------
T ss_pred CEEEEECCChhHHHHHHHhcCCCCEEcCccCCCCCchHHHHHHHHHHHHhCC-------cC-CcEEEEECCCC-------
Confidence 444444444445566666653788888887 478888899999988775321 11 24444454210
Q ss_pred cccCCccccccccchhhhhhccCCCHHHHHHHHhhc-CcEEEEeccCCc
Q 003284 144 VYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQC-SVSLSVICPKQL 191 (834)
Q Consensus 144 v~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~-~I~LSvIsPrql 191 (834)
.+ ..+-.++..++.. |++|.++||+.+
T Consensus 165 -------------------~~--rva~Sl~~~~~~~~g~~v~~~~P~~~ 192 (310)
T 3csu_A 165 -------------------YG--RTVHSLTQALAKFDGNRFYFIAPDAL 192 (310)
T ss_dssp -------------------TC--HHHHHHHHHHHTSSSCEEEEECCGGG
T ss_pred -------------------CC--chHHHHHHHHHhCCCCEEEEECCccc
Confidence 00 1456788889999 999999999987
No 51
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=22.02 E-value=92 Score=33.48 Aligned_cols=90 Identities=14% Similarity=0.213 Sum_probs=59.9
Q ss_pred CcccceeeccCCCCHHHHHHHhccCccCCCCCchhhHHHHHHHHHhhcccCCCCCCCCCCccCCcEEEEeecCCCCCCCC
Q 003284 63 YCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPT 142 (834)
Q Consensus 63 ~~~~lv~~~gfTsd~~~fl~~Ld~I~f~GGG~~~~AvaEGLa~AL~~f~~~~~~~~~~~~~~~qkhCILIa~SpP~~lp~ 142 (834)
|.+.+|-|+.--..+.+|-++. +++++=||+..++=..+|+..+++.+.... . .-.++..|+|. -
T Consensus 101 ~~D~iviR~~~~~~~~~lA~~~-~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~-------l-~gl~va~vGD~-----~- 165 (315)
T 1pvv_A 101 YVDAIMARVYDHKDVEDLAKYA-TVPVINGLSDFSHPCQALADYMTIWEKKGT-------I-KGVKVVYVGDG-----N- 165 (315)
T ss_dssp TCSEEEEECSSHHHHHHHHHHC-SSCEEEEECSSCCHHHHHHHHHHHHHHHSC-------C-TTCEEEEESCC-----C-
T ss_pred hCcEEEEecCchHHHHHHHHhC-CCCEEcCCCCCCCcHHHHHHHHHHHHHhCC-------c-CCcEEEEECCC-----c-
Confidence 4455555655555556665554 577776776688888999999988875321 1 12445555542 0
Q ss_pred CcccCCccccccccchhhhhhccCCCHHHHHHHHhhcCcEEEEeccCCc
Q 003284 143 PVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQL 191 (834)
Q Consensus 143 pv~~p~~~~~~~~e~~~~~~~~~l~d~e~lA~~~~e~~I~LSvIsPrql 191 (834)
..+-.++..++..|++|.+++|+-+
T Consensus 166 ------------------------rva~Sl~~~~~~~g~~v~~~~P~~~ 190 (315)
T 1pvv_A 166 ------------------------NVAHSLMIAGTKLGADVVVATPEGY 190 (315)
T ss_dssp ------------------------HHHHHHHHHHHHTTCEEEEECCTTC
T ss_pred ------------------------chHHHHHHHHHHCCCEEEEECCccc
Confidence 1346678888899999999999986
Done!