Query 003286
Match_columns 834
No_of_seqs 358 out of 813
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 19:59:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003286.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003286hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 9.3E-30 3.2E-34 239.6 13.1 114 119-232 6-121 (130)
2 4i1k_A B3 domain-containing tr 99.7 3.2E-16 1.1E-20 150.7 11.0 96 124-229 46-143 (146)
3 1yel_A AT1G16640; CESG, protei 99.4 5.3E-13 1.8E-17 120.5 9.8 94 124-228 8-101 (104)
4 1na6_A Ecorii, restriction end 95.4 0.018 6.1E-07 63.6 6.7 92 124-216 18-123 (404)
5 1vd2_A Protein kinase C, IOTA 93.5 0.12 4.1E-06 46.4 6.1 55 767-828 7-61 (89)
6 2kkc_A Sequestosome-1; P62, PB 92.9 0.088 3E-06 48.4 4.4 62 763-830 2-79 (102)
7 1wmh_B Partitioning defective- 92.2 0.26 8.9E-06 44.1 6.4 56 767-829 7-63 (86)
8 2ktr_A Sequestosome-1; autopha 92.0 0.12 4.1E-06 48.6 4.2 59 764-829 18-93 (117)
9 1q1o_A Cell division control p 82.9 2 6.7E-05 39.4 5.9 65 765-831 4-75 (98)
10 1pqs_A Cell division control p 78.2 1.8 6.3E-05 37.8 4.0 49 781-831 6-54 (77)
11 4b8c_D Glucose-repressible alc 60.2 2 6.8E-05 50.0 0.3 6 428-433 38-43 (727)
12 2bkf_A Zinc-finger protein NBR 58.4 19 0.00067 32.3 6.2 52 768-828 8-60 (87)
13 1wj6_A KIAA0049 protein, RSGI 52.4 20 0.00069 33.0 5.5 53 767-828 15-68 (101)
14 2k8i_A SLYD, peptidyl-prolyl C 48.7 34 0.0012 33.4 6.8 102 205-321 3-114 (171)
15 2kr7_A FKBP-type peptidyl-prol 46.6 62 0.0021 30.7 8.2 105 202-321 4-119 (151)
16 2kfw_A FKBP-type peptidyl-prol 46.4 16 0.00053 36.7 4.1 102 205-321 3-114 (196)
17 3cgm_A SLYD, peptidyl-prolyl C 45.1 32 0.0011 33.2 5.9 100 205-321 3-110 (158)
18 1oey_J P40-PHOX, neutrophil cy 44.1 29 0.001 32.2 5.1 46 776-830 18-67 (107)
19 3p8d_A Medulloblastoma antigen 40.3 41 0.0014 28.8 5.1 53 290-360 5-57 (67)
20 3iot_A Maltose-binding protein 39.9 5.9 0.0002 42.4 -0.1 6 196-201 129-134 (449)
21 2jng_A Cullin-7, CUL-7; P53 bi 36.7 48 0.0016 30.8 5.3 73 274-361 6-78 (105)
22 3qii_A PHD finger protein 20; 33.0 56 0.0019 29.2 5.0 53 290-360 20-72 (85)
23 1mhn_A SurviVal motor neuron p 32.8 45 0.0015 26.9 4.1 28 291-321 3-30 (59)
24 3s6w_A Tudor domain-containing 32.5 40 0.0014 26.7 3.7 28 291-321 1-28 (54)
25 4a4f_A SurviVal of motor neuro 32.1 44 0.0015 27.5 4.0 42 290-343 7-48 (64)
26 4dt4_A FKBP-type 16 kDa peptid 31.1 62 0.0021 31.7 5.5 105 204-321 24-138 (169)
27 1oey_A P67-PHOX, neutrophil cy 30.7 96 0.0033 27.5 6.1 56 767-831 6-62 (83)
28 3pr9_A FKBP-type peptidyl-prol 30.2 2.4E+02 0.0081 27.1 9.4 61 250-321 57-123 (157)
29 2equ_A PHD finger protein 20-l 29.6 50 0.0017 28.5 4.1 39 290-342 8-46 (74)
30 2e63_A KIAA1787 protein; struc 27.2 39 0.0013 33.2 3.3 26 202-227 115-140 (170)
31 1g5v_A SurviVal motor neuron p 24.8 68 0.0023 28.5 4.1 42 290-343 9-50 (88)
32 3o27_A Putative uncharacterize 21.3 48 0.0017 28.6 2.3 33 197-229 31-64 (68)
33 2yue_A Protein neuralized; str 20.4 80 0.0027 30.9 4.1 22 206-227 107-128 (168)
34 1e8p_A Endoglucanase, dockerin 20.4 32 0.0011 27.7 1.0 13 815-827 20-32 (46)
35 3pie_A 5'->3' exoribonuclease 20.4 1.2E+02 0.0042 37.9 6.5 49 289-345 1063-1111(1155)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.96 E-value=9.3e-30 Score=239.63 Aligned_cols=114 Identities=29% Similarity=0.464 Sum_probs=105.1
Q ss_pred CCCCCceeEEEeecccCCCCCCceeechhhhhhcCCCCCCCCCCCceEEEEeecCCCeeEEEEEEcCCCcceeecccccc
Q 003286 119 LSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSV 198 (834)
Q Consensus 119 ~~~~~~~lF~K~LT~SDv~~~grfsVPk~~AE~~FP~Ld~~~~~p~q~L~v~D~~G~~W~FR~iyrg~prrhlLTtGWs~ 198 (834)
..+....+|+|+||+|||++++||+||+++||+|||.++..+.+++++|.++|.+|++|+|||+||+++++|+||+||+.
T Consensus 6 ~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~ 85 (130)
T 1wid_A 6 SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSR 85 (130)
T ss_dssp --CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHH
T ss_pred CCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHH
Confidence 45667889999999999999999999999999999999987777889999999999999999999999999999999999
Q ss_pred eecccCCcCCCEEEEEEcC--CCcEEEEEEccCCCC
Q 003286 199 FVSAKRLVAGDSVLFIWND--KNQLLLGIRRANRPP 232 (834)
Q Consensus 199 FV~~KkL~aGDsVvF~R~~--~g~L~VGIRRa~r~~ 232 (834)
||++|+|++||.|+|+|++ +++|+|++||+.++.
T Consensus 86 FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 86 FVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 9999999999999999986 468999999998754
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.65 E-value=3.2e-16 Score=150.67 Aligned_cols=96 Identities=21% Similarity=0.314 Sum_probs=85.0
Q ss_pred ceeEEEeecccCCCCCCceeechhhhhhcCCCCCCCCCCCceEEEEeecCCCeeEEEEEEcCCCcceeecccccceeccc
Q 003286 124 TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAK 203 (834)
Q Consensus 124 ~~lF~K~LT~SDv~~~grfsVPk~~AE~~FP~Ld~~~~~p~q~L~v~D~~G~~W~FR~iyrg~prrhlLTtGWs~FV~~K 203 (834)
..+|.|+||+|||.+..++.||++.|+.+||..+ ..+.+.|. |+.|.|+|+|++. ++.|++||..||+++
T Consensus 46 ~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~dn 115 (146)
T 4i1k_A 46 NPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLEN 115 (146)
T ss_dssp SCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHHT
T ss_pred CCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC-------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHHHc
Confidence 4599999999999887789999999999999753 56888888 6999999999974 689999999999999
Q ss_pred CCcCCCEEEEEEcCCC--cEEEEEEccC
Q 003286 204 RLVAGDSVLFIWNDKN--QLLLGIRRAN 229 (834)
Q Consensus 204 kL~aGDsVvF~R~~~g--~L~VGIRRa~ 229 (834)
+|++||.++|...++. .+.|.|-|+.
T Consensus 116 ~L~~GD~cvFeli~~~~~~f~V~IfR~~ 143 (146)
T 4i1k_A 116 NLGEGDVCVFELLRTRDFVLKVTAFRVN 143 (146)
T ss_dssp TCCTTCEEEEEECSSSSCEEEEEEECCC
T ss_pred CCCCCCEEEEEEecCCceEEEEEEEecc
Confidence 9999999999998765 5779998875
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.41 E-value=5.3e-13 Score=120.50 Aligned_cols=94 Identities=22% Similarity=0.394 Sum_probs=80.8
Q ss_pred ceeEEEeecccCCCCCCceeechhhhhhcCCCCCCCCCCCceEEEEeecCCCeeEEEEEEcCCCcceeecccccceeccc
Q 003286 124 TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAK 203 (834)
Q Consensus 124 ~~lF~K~LT~SDv~~~grfsVPk~~AE~~FP~Ld~~~~~p~q~L~v~D~~G~~W~FR~iyrg~prrhlLTtGWs~FV~~K 203 (834)
...|.|+|+++|. ..++.||++.++.+.+.+ ...+.++|..|++|++++.++. ++++|+.||..||+++
T Consensus 8 ~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~-------~~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~ 76 (104)
T 1yel_A 8 EVQFMKPFISEKS--SKSLEIPLGFNEYFPAPF-------PITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDN 76 (104)
T ss_dssp CEEEEEECCHHHH--TTCEECCHHHHTTCCCCC-------CSEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHH
T ss_pred CCCEEEEECCCCc--cceEECCHHHHHhcCccC-------CCEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHHc
Confidence 4589999999994 569999999998866543 3478999999999999999774 4789999999999999
Q ss_pred CCcCCCEEEEEEcCCCcEEEEEEcc
Q 003286 204 RLVAGDSVLFIWNDKNQLLLGIRRA 228 (834)
Q Consensus 204 kL~aGDsVvF~R~~~g~L~VGIRRa 228 (834)
+|++||.++|...++..+.|-|=|.
T Consensus 77 ~L~~GD~lvF~~~~~~~f~V~If~~ 101 (104)
T 1yel_A 77 NLEDGKYLQFIYDRDRTFYVIIYGH 101 (104)
T ss_dssp TCCTTCEEEEEECSSSEEEEEEECS
T ss_pred CCCCCCEEEEEEcCCCeEEEEEECC
Confidence 9999999999998888888877553
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=95.45 E-value=0.018 Score=63.63 Aligned_cols=92 Identities=23% Similarity=0.349 Sum_probs=66.0
Q ss_pred ceeEEEeecccCCCCCC----ceeechhhhhhcCCCCC-CCCCCCceEEEE--eecCCCeeEEEEEEcC------CCcce
Q 003286 124 TNYFCKTLTASDTSTHG----GFSVPRRAAEKVFPPLD-FSQQPPAQELIA--RDLHDNEWKFRHIFRG------QPKRH 190 (834)
Q Consensus 124 ~~lF~K~LT~SDv~~~g----rfsVPk~~AE~~FP~Ld-~~~~~p~q~L~v--~D~~G~~W~FR~iyrg------~prrh 190 (834)
...|+|.|++.|++..| +|.+|+...+.+||.|+ .....+...+.+ -|...-++.++.+|.+ ++..|
T Consensus 18 ~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnEy 97 (404)
T 1na6_A 18 YFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEK 97 (404)
T ss_dssp EEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCEE
T ss_pred chheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCce
Confidence 57899999999999874 79999987999999998 334455555443 4444455699999986 44568
Q ss_pred eeccccc-ceecccCCcCCCEEEEEEc
Q 003286 191 LLTTGWS-VFVSAKRLVAGDSVLFIWN 216 (834)
Q Consensus 191 lLTtGWs-~FV~~KkL~aGDsVvF~R~ 216 (834)
.||. |- .+.=.....+||.++|-+.
T Consensus 98 RLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 98 RITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEee-cCCCCcccccCCCCCEEEEEEe
Confidence 8873 32 2333467789999888743
No 5
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=93.47 E-value=0.12 Score=46.38 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=41.7
Q ss_pred ceEEEeccccceeeeccCCCCCHHHHHHHHHHhcCcCCccCCCCCCceEEEEEeCCCCeEec
Q 003286 767 TFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLL 828 (834)
Q Consensus 767 ~fVKV~m~G~iGRkIDL~~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvY~D~EGD~mLv 828 (834)
.=||++-.|.+ |-+.+..--+|++|..+|..+|++. .+..+++.|.|.|||+.-+
T Consensus 7 vkvK~~~~gdi-~~~~v~~~i~~~~L~~kv~~~~~~~------~~~~f~lky~DEeGD~iti 61 (89)
T 1vd2_A 7 VRVKAYYRGDI-MITHFEPSISFEGLCNEVRDMCSFD------NEQLFTMKWIDEEGDPCTV 61 (89)
T ss_dssp EEEEEESSSCE-EEEEECTTCCHHHHHHHHHHHTTCC------SSCCEEEEECCSSSCCEEC
T ss_pred EEEEEEeCCeE-EEEECCCCCCHHHHHHHHHHHhCCC------CCCeEEEEEECCCCCcccc
Confidence 46777888842 2333444569999999999999974 3456899999999998654
No 6
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=92.88 E-value=0.088 Score=48.35 Aligned_cols=62 Identities=21% Similarity=0.229 Sum_probs=43.3
Q ss_pred CCCcceEEEeccc-----cceeeeccCC-----------CCCHHHHHHHHHHhcCcCCccCCCCCCceEEEEEeCCCCeE
Q 003286 763 PPNRTFVKVYKSG-----SFGRSLDITK-----------FSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVL 826 (834)
Q Consensus 763 ~~~~~fVKV~m~G-----~iGRkIDL~~-----------~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvY~D~EGD~m 826 (834)
|..++=||+|-.| .-=|.+-|.. ..+|++|+..+.++|.-- .+..|+|.|.|.|||..
T Consensus 2 ~~m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l------~~~~f~l~Y~DedGDlI 75 (102)
T 2kkc_A 2 PHMSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL------RPGGFQAHYRAERGDLV 75 (102)
T ss_dssp -CCEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS------CSSCEEEEEECTTCCEE
T ss_pred CCceEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHcccc------CCCcEEEEEECCCCCEE
Confidence 3456789999865 1224444421 248999999999999621 23469999999999987
Q ss_pred eccc
Q 003286 827 LLGD 830 (834)
Q Consensus 827 LvGD 830 (834)
-+.+
T Consensus 76 tiSs 79 (102)
T 2kkc_A 76 AFSS 79 (102)
T ss_dssp EECS
T ss_pred EecC
Confidence 6543
No 7
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=92.18 E-value=0.26 Score=44.14 Aligned_cols=56 Identities=23% Similarity=0.255 Sum_probs=44.1
Q ss_pred ceEEEecccccee-eeccCCCCCHHHHHHHHHHhcCcCCccCCCCCCceEEEEEeCCCCeEecc
Q 003286 767 TFVKVYKSGSFGR-SLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLG 829 (834)
Q Consensus 767 ~fVKV~m~G~iGR-kIDL~~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvY~D~EGD~mLvG 829 (834)
.=||.+-++.+=| +||-+.-.+|++|+.-|+++|.+. ...+++.|.|.+||++-+-
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~-------~~~f~i~Y~D~dGDLlpIn 63 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP-------GLDVLLGYTDAHGDLLPLT 63 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT-------TCCCEEEEECTTSCEEECC
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCC-------CCCEEEEEECCCCCEeeec
Confidence 4567766776544 667677889999999999999853 2459999999999998653
No 8
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=91.98 E-value=0.12 Score=48.60 Aligned_cols=59 Identities=22% Similarity=0.266 Sum_probs=42.0
Q ss_pred CCcceEEEeccc-----cceeeeccC-----------CCCCHHHHHHHHHHhcC-cCCccCCCCCCceEEEEEeCCCCeE
Q 003286 764 PNRTFVKVYKSG-----SFGRSLDIT-----------KFSSYHELRSELARMFG-LEGHLEDPLRSGWQLVFVDRENDVL 826 (834)
Q Consensus 764 ~~~~fVKV~m~G-----~iGRkIDL~-----------~~~sY~eL~~~L~~MF~-~~g~l~d~~~s~~~lvY~D~EGD~m 826 (834)
..++=||++-.| .==|++-|. .-.+|++|+..+.++|. +. +..|+|.|.|.|||..
T Consensus 18 ~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~-------~~~f~l~YkDEdGDlI 90 (117)
T 2ktr_A 18 MGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALR-------PGGFQAHYRAERGDLV 90 (117)
T ss_dssp --CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC-------SSCEEEEEECTTCCEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccC-------CCcEEEEEECCCCCEE
Confidence 456789999975 122444443 14599999999999995 32 3469999999999987
Q ss_pred ecc
Q 003286 827 LLG 829 (834)
Q Consensus 827 LvG 829 (834)
-+.
T Consensus 91 tIS 93 (117)
T 2ktr_A 91 AFS 93 (117)
T ss_dssp EEC
T ss_pred Eec
Confidence 654
No 9
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=82.87 E-value=2 Score=39.37 Aligned_cols=65 Identities=14% Similarity=0.256 Sum_probs=47.3
Q ss_pred CcceEEEeccc-----cce--eeeccCCCCCHHHHHHHHHHhcCcCCccCCCCCCceEEEEEeCCCCeEecccC
Q 003286 765 NRTFVKVYKSG-----SFG--RSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDG 831 (834)
Q Consensus 765 ~~~fVKV~m~G-----~iG--RkIDL~~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvY~D~EGD~mLvGDv 831 (834)
.+.-|||+-.. +++ |.|=+..--+|++|...+.+-|++. .-++ .+...+|-|+|.|||+..++++
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~-~~~~-i~~~~klkYkDEdGD~Vtl~sd 75 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT-HNNN-ISPITKIKYQDEDGDFVVLGSD 75 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH-CSSC-CCCCCCEEEECSSSCEEEECSH
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC-cccc-ccceeEEEEEcCCCCEEEEcCH
Confidence 34567777542 234 7777788889999999999999975 1111 1234689999999999988763
No 10
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=78.23 E-value=1.8 Score=37.80 Aligned_cols=49 Identities=14% Similarity=0.279 Sum_probs=36.1
Q ss_pred eccCCCCCHHHHHHHHHHhcCcCCccCCCCCCceEEEEEeCCCCeEecccC
Q 003286 781 LDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDG 831 (834)
Q Consensus 781 IDL~~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvY~D~EGD~mLvGDv 831 (834)
|=+..--+|++|...+.+-|++. ..+..+...+|-|+|.|||+...+++
T Consensus 6 i~V~~~i~f~~L~~kI~~kl~~~--~~~~~~~~~~lkYkDEdGD~Vti~sd 54 (77)
T 1pqs_A 6 LLVEKVWNFDDLIMAINSKISNT--HNNNISPITKIKYQDEDGDFVVLGSD 54 (77)
T ss_dssp EECTTCCCSHHHHHHHHHHTTTT--TSSCSCSTTCCEEEETTTEEEECCST
T ss_pred EEeCCCCCHHHHHHHHHHHHccc--ccccccceeEEEEEcCCCCEEEEcCH
Confidence 33444568999999999999964 11111355789999999999888764
No 11
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=60.19 E-value=2 Score=49.97 Aligned_cols=6 Identities=50% Similarity=0.800 Sum_probs=2.5
Q ss_pred Cccccc
Q 003286 428 DASMLG 433 (834)
Q Consensus 428 ~~~~~~ 433 (834)
|+++..
T Consensus 38 ~~~~~~ 43 (727)
T 4b8c_D 38 DPSLLN 43 (727)
T ss_dssp SCCCTT
T ss_pred Cchhcc
Confidence 444433
No 12
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=58.40 E-value=19 Score=32.32 Aligned_cols=52 Identities=13% Similarity=0.239 Sum_probs=40.0
Q ss_pred eEEEeccccc-eeeeccCCCCCHHHHHHHHHHhcCcCCccCCCCCCceEEEEEeCCCCeEec
Q 003286 768 FVKVYKSGSF-GRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLL 828 (834)
Q Consensus 768 fVKV~m~G~i-GRkIDL~~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvY~D~EGD~mLv 828 (834)
=+||+=-|.. ---|.-..-.++++|..-+..+|++. .+++.|-|.|||-.-|
T Consensus 8 ~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~---------~~~ikY~DEenD~v~i 60 (87)
T 2bkf_A 8 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN---------TIQIKYLDEENEEVSI 60 (87)
T ss_dssp EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS---------SEEEEEECTTSCEEEE
T ss_pred EEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC---------ceEEEEEcCCCCEEEE
Confidence 4688888833 33464444678999999999999984 4799999999997643
No 13
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=52.45 E-value=20 Score=33.01 Aligned_cols=53 Identities=13% Similarity=0.235 Sum_probs=41.0
Q ss_pred ceEEEeccccc-eeeeccCCCCCHHHHHHHHHHhcCcCCccCCCCCCceEEEEEeCCCCeEec
Q 003286 767 TFVKVYKSGSF-GRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLL 828 (834)
Q Consensus 767 ~fVKV~m~G~i-GRkIDL~~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvY~D~EGD~mLv 828 (834)
.=+||+--|.+ =--|.-..-.++++|..-+..+|++. .++|.|-|.|||-.-|
T Consensus 15 v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~---------~~~IkY~DEenD~V~i 68 (101)
T 1wj6_A 15 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN---------TIQIKYLDEENEEVSI 68 (101)
T ss_dssp EEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS---------SBCCEEECTTSCEECC
T ss_pred EEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC---------ceEEEEecCCCCEEEE
Confidence 45788888843 33564455678999999999999984 4689999999997643
No 14
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=48.74 E-value=34 Score=33.44 Aligned_cols=102 Identities=19% Similarity=0.222 Sum_probs=61.5
Q ss_pred CcCCCEEEE-EE--cCCCcEEEEEEccCCCCCCCCCCc-ccCCccccchHHHHHHHHHcCCcEEEEEcCCCCC------C
Q 003286 205 LVAGDSVLF-IW--NDKNQLLLGIRRANRPPTVMPSSV-LSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASP------S 274 (834)
Q Consensus 205 L~aGDsVvF-~R--~~~g~L~VGIRRa~r~~~~~pssv-~s~~sm~~gvlaaAa~aaat~~~F~V~Y~PRas~------s 274 (834)
.+.||.|.+ |+ ..+|+.+-.-+.. .|..+ +....+-.| +.+|......|..++|..-|-... .
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~vipG-~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~~~ 75 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSLISG-LETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCSS------SCEEEETTSCSSCSH-HHHHHTTCCTTCEEEEEEETTTSSCCCCTTS
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccCC------cCEEEEECCCCcchH-HHHHHcCCCCCCEEEEEECcHHhcCCCChhh
Confidence 568888877 43 3477766544321 12111 112222223 456666677888888877665433 3
Q ss_pred ccccchHHHHHHHhcCCCccCCEEEEeeeccccccceeeEEEEEeec
Q 003286 275 EFVIPLAKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (834)
Q Consensus 275 EFVVp~~kyvkA~~~~~ws~GMRFrM~fEtEdss~rr~~GTI~gv~d 321 (834)
-+.||+..|-. ...+.+||+|.+ ++++. . ..|+|+.|.+
T Consensus 76 v~~v~~~~f~~---~~~~~~G~~~~~--~~~~G--~-~~~~V~~v~~ 114 (171)
T 2k8i_A 76 VQRVPKDVFMG---VDELQVGMRFLA--ETDQG--P-VPVEITAVED 114 (171)
T ss_dssp EEEEEGGGGTT---SSCCCTTCEEEE--EETTE--E-EEEEEEEECS
T ss_pred EEEeeHHHCCc---ccCccCCcEEEE--ECCCC--c-EEEEEEEEcC
Confidence 35788876632 136999999985 55553 2 6899999975
No 15
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=46.61 E-value=62 Score=30.69 Aligned_cols=105 Identities=14% Similarity=0.149 Sum_probs=64.0
Q ss_pred ccCCcCCCEEEE-EE--cC-CCcEEEEEEccCCCCCCCCCCc-ccCCccccchHHHHHHHHHcCCcEEEEEcCCCC----
Q 003286 202 AKRLVAGDSVLF-IW--ND-KNQLLLGIRRANRPPTVMPSSV-LSSDSMHLGLLAAAAHAAATNSRFTIFYNPRAS---- 272 (834)
Q Consensus 202 ~KkL~aGDsVvF-~R--~~-~g~L~VGIRRa~r~~~~~pssv-~s~~sm~~gvlaaAa~aaat~~~F~V~Y~PRas---- 272 (834)
.+..+.||.|.+ |+ .. +|+.+-.-+.. .|... +....+-.| +.+|......|..++|.--|-..
T Consensus 4 ~~~i~~gd~V~v~Y~g~~~~dG~~fdss~~~------~p~~f~~G~g~vipg-~e~aL~gm~~Ge~~~v~ipp~~aYG~~ 76 (151)
T 2kr7_A 4 HDLESIKQAALIEYEVREQGSSIVLDSNISK------EPLEFIIGTNQIIAG-LEKAVLKAQIGEWEEVVIAPEEAYGVY 76 (151)
T ss_dssp CCCTTSCCEEEEEEEEEESSCSCEEEESTTT------CCEEEETTCCCSCHH-HHHHHTTCCBTCEEEEEECGGGTTCSS
T ss_pred ccCCCCCCEEEEEEEEEECCCCCEEEeCCCC------cCEEEEECCCCccHH-HHHHHcCCCCCCEEEEEEecHHHcCCC
Confidence 455778999887 43 34 77766544321 12111 112222222 45666666788888887655432
Q ss_pred --CCccccchHHHHHHHhcCCCccCCEEEEeeeccccccceeeEEEEEeec
Q 003286 273 --PSEFVIPLAKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (834)
Q Consensus 273 --~sEFVVp~~kyvkA~~~~~ws~GMRFrM~fEtEdss~rr~~GTI~gv~d 321 (834)
-.-+.||+..+ . ...+.+||+|.+ ++++. ....|+|+.|.+
T Consensus 77 ~~~~v~~v~~~~f--~--~~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 119 (151)
T 2kr7_A 77 ESSYLQEVPRDQF--E--GIELEKGMSVFG--QTEDN--QTIQAIIKDFSA 119 (151)
T ss_dssp CSCEEEEEEGGGG--T--TSCCCTTCEEEE--EETTT--EEEEEEEEEECS
T ss_pred CcceEEEEcHHHc--C--CCCCccCCEEEE--ECCCC--CEEEEEEEEECC
Confidence 23467888776 1 247999999985 45553 467899999975
No 16
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=46.44 E-value=16 Score=36.70 Aligned_cols=102 Identities=19% Similarity=0.229 Sum_probs=60.9
Q ss_pred CcCCCEEEE-EE--cCCCcEEEEEEccCCCCCCCCCCc-ccCCccccchHHHHHHHHHcCCcEEEEEcCCCC------CC
Q 003286 205 LVAGDSVLF-IW--NDKNQLLLGIRRANRPPTVMPSSV-LSSDSMHLGLLAAAAHAAATNSRFTIFYNPRAS------PS 274 (834)
Q Consensus 205 L~aGDsVvF-~R--~~~g~L~VGIRRa~r~~~~~pssv-~s~~sm~~gvlaaAa~aaat~~~F~V~Y~PRas------~s 274 (834)
.+.||.|.+ |+ ..+|+.+-.-+.. .|..+ +....+-.| |.+|......|..++|..-|-.. -.
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~vipG-~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~l 75 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSLISG-LETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECCTT------SCCEEESSSSSSCHH-HHHHHSSSCTTCEEEEECSTTTTSSCCCTTT
T ss_pred CCCCCEEEEEEEEEECCCCEEEecCCC------CCEEEEECCCCcchH-HHHHHcCCCCCCEEEEEeCcHHhcCCCChhh
Confidence 568898877 43 3577766543221 12222 122222222 45666666778888888665432 23
Q ss_pred ccccchHHHHHHHhcCCCccCCEEEEeeeccccccceeeEEEEEeec
Q 003286 275 EFVIPLAKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (834)
Q Consensus 275 EFVVp~~kyvkA~~~~~ws~GMRFrM~fEtEdss~rr~~GTI~gv~d 321 (834)
-+.||+..|.. ...+.+||+|.+ ++++- .+.++|+.|.+
T Consensus 76 V~~vp~~~f~~---~~~~~~G~~~~~--~~~~G---~~~~~V~~v~~ 114 (196)
T 2kfw_A 76 VQRVPKDVFMG---VDELQVGMRFLA--ETDQG---PVPVEITAVED 114 (196)
T ss_dssp CEEECGGGCCC---SSCCCTTCEEEE--EETTE---EEEEEBCCCCS
T ss_pred EEEEEHHHCCC---ccCcccCCEEEE--ECCCC---cEEEEEEEEcC
Confidence 46788776521 136999999974 55552 67899999975
No 17
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=45.08 E-value=32 Score=33.19 Aligned_cols=100 Identities=14% Similarity=0.119 Sum_probs=60.2
Q ss_pred CcCCCEEEE-EEc-CCCcEEEEEEccCCCCCCCCCCcccCCccccchHHHHHHHHHcCCcEEEEEcCCCCC------Ccc
Q 003286 205 LVAGDSVLF-IWN-DKNQLLLGIRRANRPPTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASP------SEF 276 (834)
Q Consensus 205 L~aGDsVvF-~R~-~~g~L~VGIRRa~r~~~~~pssv~s~~sm~~gvlaaAa~aaat~~~F~V~Y~PRas~------sEF 276 (834)
.+.||.|.+ |+. .+|+.+-.-+ ... .+....+-.| +.+|......|..++|.--|.... .-+
T Consensus 3 i~~gd~V~v~Y~g~~dG~~fdss~--~~f-------~~G~g~vipG-~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~~lv~ 72 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQVEGEVLDQGE--LSY-------LHGHRNLIPG-LEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQ 72 (158)
T ss_dssp CCTTEEEEEEEEEEETTEEEEEEE--EEE-------ETTSSSSCHH-HHHHHTTCBTTCEEEEEECGGGTTCCCCGGGEE
T ss_pred CCCCCEEEEEEEEEECCEEEEeeE--EEE-------EECCCCcChH-HHHHHcCCCCCCEEEEEECcHHHcCCCCcceEE
Confidence 567888876 332 5676654433 000 0111122222 456666677788888887664432 346
Q ss_pred ccchHHHHHHHhcCCCccCCEEEEeeeccccccceeeEEEEEeec
Q 003286 277 VIPLAKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (834)
Q Consensus 277 VVp~~kyvkA~~~~~ws~GMRFrM~fEtEdss~rr~~GTI~gv~d 321 (834)
.||+..+-+. ..|.+||+|.+ ++++. +.+.|+|+.|.+
T Consensus 73 ~v~~~~f~~~---~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 110 (158)
T 3cgm_A 73 VVPLSAFPED---AEVVPGAQFYA--QDMEG--NPMPLTVVAVEG 110 (158)
T ss_dssp EEEGGGSCTT---SCCCTTCEEEE--EETTT--EEEEEEEEEEET
T ss_pred EEEHHHCCCC---CCCccCCEEEE--ECCCC--CEEEEEEEEECC
Confidence 7887766321 37999999985 45542 567899999975
No 18
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=44.10 E-value=29 Score=32.20 Aligned_cols=46 Identities=24% Similarity=0.253 Sum_probs=36.1
Q ss_pred cceeee----ccCCCCCHHHHHHHHHHhcCcCCccCCCCCCceEEEEEeCCCCeEeccc
Q 003286 776 SFGRSL----DITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGD 830 (834)
Q Consensus 776 ~iGRkI----DL~~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvY~D~EGD~mLvGD 830 (834)
...|.| ||+.--+|+||..-..+-|..+ +-.|-|.|.|||+.-+=|
T Consensus 18 ~~irdI~veedl~~~P~ykdLl~lmr~~F~~~---------DIaLNYrD~eGDLIrild 67 (107)
T 1oey_J 18 STIKDIAVEEDLSSTPLLKDLLELTRREFQRE---------DIALNYRDAEGDLVRLLS 67 (107)
T ss_dssp EEEEEEEECSCTTCCCCHHHHHHHHHHHHCCS---------SEEEEEECTTSCEEECCS
T ss_pred ceeeeEEEccccccCCCHHHHHHHHHHHhccc---------ceeeeeecCCCCEEEEcc
Confidence 444555 6777889999999999999843 468999999999975533
No 19
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=40.32 E-value=41 Score=28.79 Aligned_cols=53 Identities=9% Similarity=0.202 Sum_probs=39.5
Q ss_pred CCCccCCEEEEeeeccccccceeeEEEEEeecCCCCCCCCCCceeeEEeeCCCCCCCCCCCccccccccCC
Q 003286 290 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVKWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLT 360 (834)
Q Consensus 290 ~~ws~GMRFrM~fEtEdss~rr~~GTI~gv~d~Dp~rWP~S~WR~LqV~WDe~~~~~~~~RVSPWEIEpv~ 360 (834)
..|.+|+++-..+ ++- ++|-++|++|... ....|..++.. .+.|..=+|.|+.
T Consensus 5 ~~~~vGd~vmArW-~D~---~yYpA~I~si~~~----------~~Y~V~F~dG~----~etvk~~~ikp~~ 57 (67)
T 3p8d_A 5 SEFQINEQVLACW-SDC---RFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFS 57 (67)
T ss_dssp CCCCTTCEEEEEC-TTS---CEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC
T ss_pred cccccCCEEEEEc-CCC---CEeeEEEEEECCC----------CeEEEEEeCCc----eEEEeHHHcccCC
Confidence 5799999999999 332 8999999999752 45899999843 3556655555543
No 20
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=39.92 E-value=5.9 Score=42.45 Aligned_cols=6 Identities=17% Similarity=0.711 Sum_probs=2.8
Q ss_pred ccceec
Q 003286 196 WSVFVS 201 (834)
Q Consensus 196 Ws~FV~ 201 (834)
|..|+.
T Consensus 129 wdel~~ 134 (449)
T 3iot_A 129 WEEIPA 134 (449)
T ss_dssp GGGHHH
T ss_pred HHHHHH
Confidence 555443
No 21
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=36.66 E-value=48 Score=30.77 Aligned_cols=73 Identities=32% Similarity=0.339 Sum_probs=44.2
Q ss_pred CccccchHHHHHHHhcCCCccCCEEEEeeeccccccceeeEEEEEeecCCCCCCCCCCceeeEEeeCCCCCCCCCCCccc
Q 003286 274 SEFVIPLAKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVKWPNSHWRSVKVGWDESTAGERQPRVSL 353 (834)
Q Consensus 274 sEFVVp~~kyvkA~~~~~ws~GMRFrM~fEtEdss~rr~~GTI~gv~d~Dp~rWP~S~WR~LqV~WDe~~~~~~~~RVSP 353 (834)
++|- ..+.|..-+. .+..+|||+||.=.-|+-+. -=.|++. ++. + . -+ .+||.|.... +.-.|+-
T Consensus 6 sdF~-s~~~Ya~YVr-~~l~pGM~VR~~~dyeev~~-GD~G~vl-~s~-~--G---l~--~vQv~W~~~G---~TyWV~~ 70 (105)
T 2jng_A 6 SEFA-SGNTYALYVR-DTLQPGMRVRMLDDYEEISA-GDEGEFR-QSN-N--G---VP--PVQVFWESTG---RTYWVHW 70 (105)
T ss_dssp GGSS-SSHHHHHHHH-HHCCTTCEEEECSCBTTBCT-TCEEEEE-EEC-T--T---SS--EEEEEETTTT---EEEEEEG
T ss_pred hhcc-cchhHHHHHH-hcCCCccEEeeehhhhhhcc-CCceeEE-ecC-C--C---Cc--cceeeehhcC---ceEEEEe
Confidence 4554 2355666665 46999999999633333221 2378888 442 2 2 22 8999999664 2345666
Q ss_pred cccccCCC
Q 003286 354 WEIEPLTT 361 (834)
Q Consensus 354 WEIEpv~~ 361 (834)
=.||.+..
T Consensus 71 ~~~Ellg~ 78 (105)
T 2jng_A 71 HMLEILGF 78 (105)
T ss_dssp GGEEECCC
T ss_pred ehhhhcCC
Confidence 66777653
No 22
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=33.03 E-value=56 Score=29.24 Aligned_cols=53 Identities=9% Similarity=0.202 Sum_probs=39.5
Q ss_pred CCCccCCEEEEeeeccccccceeeEEEEEeecCCCCCCCCCCceeeEEeeCCCCCCCCCCCccccccccCC
Q 003286 290 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVKWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLT 360 (834)
Q Consensus 290 ~~ws~GMRFrM~fEtEdss~rr~~GTI~gv~d~Dp~rWP~S~WR~LqV~WDe~~~~~~~~RVSPWEIEpv~ 360 (834)
..|.+|+++-..+ ++- ++|-++|++|... ....|.+++.. .+.|.+=+|.|++
T Consensus 20 ~~f~vGd~VlArW-~D~---~yYPAkI~sV~~~----------~~YtV~F~DG~----~etvk~~~IKp~~ 72 (85)
T 3qii_A 20 SEFQINEQVLACW-SDC---RFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFS 72 (85)
T ss_dssp -CCCTTCEEEEEC-TTS---CEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC
T ss_pred cccccCCEEEEEe-CCC---CEeeEEEEEECCC----------CeEEEEEeCCC----eEEecHHHcccCC
Confidence 5799999999999 433 8999999999852 36999999843 3556666666544
No 23
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=32.77 E-value=45 Score=26.92 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=23.5
Q ss_pred CCccCCEEEEeeeccccccceeeEEEEEeec
Q 003286 291 RVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (834)
Q Consensus 291 ~ws~GMRFrM~fEtEdss~rr~~GTI~gv~d 321 (834)
.|.+|+.+-..|..+. .||.++|+++..
T Consensus 3 ~~~~G~~c~A~~s~Dg---~wYrA~I~~i~~ 30 (59)
T 1mhn_A 3 QWKVGDKCSAIWSEDG---CIYPATIASIDF 30 (59)
T ss_dssp CCCTTCEEEEECTTTS---CEEEEEEEEEET
T ss_pred cCCcCCEEEEEECCCC---CEEEEEEEEEcC
Confidence 6999999999995333 799999999964
No 24
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=32.45 E-value=40 Score=26.66 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=22.2
Q ss_pred CCccCCEEEEeeeccccccceeeEEEEEeec
Q 003286 291 RVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (834)
Q Consensus 291 ~ws~GMRFrM~fEtEdss~rr~~GTI~gv~d 321 (834)
.|.+|+..-..|..|. .||.++|.++..
T Consensus 1 ~wk~G~~c~A~~s~Dg---~wYrA~I~~i~~ 28 (54)
T 3s6w_A 1 MWKPGDECFALYWEDN---KFYRAEVEALHS 28 (54)
T ss_dssp CCCTTCEEEEEETTTT---EEEEEEEEEC--
T ss_pred CCCCCCEEEEEECCCC---CEEEEEEEEEeC
Confidence 4899999999995444 799999999963
No 25
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=32.14 E-value=44 Score=27.55 Aligned_cols=42 Identities=12% Similarity=0.223 Sum_probs=31.5
Q ss_pred CCCccCCEEEEeeeccccccceeeEEEEEeecCCCCCCCCCCceeeEEeeCCCC
Q 003286 290 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVKWPNSHWRSVKVGWDEST 343 (834)
Q Consensus 290 ~~ws~GMRFrM~fEtEdss~rr~~GTI~gv~d~Dp~rWP~S~WR~LqV~WDe~~ 343 (834)
..|.+|+.+.-.|..+. .||.++|.+|.... ....|...+=.
T Consensus 7 ~~~~vGd~c~A~~s~Dg---~wYrA~I~~v~~~~---------~~~~V~fvdYG 48 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSEDG---QCYEAEIEEIDEEN---------GTAAITFAGYG 48 (64)
T ss_dssp SCCCTTCEEEEECTTTS---SEEEEEEEEEETTT---------TEEEEEETTTT
T ss_pred CCCCCCCEEEEEECCCC---CEEEEEEEEEcCCC---------CEEEEEEEecC
Confidence 47999999999995433 79999999997421 24677777653
No 26
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=31.05 E-value=62 Score=31.69 Aligned_cols=105 Identities=15% Similarity=0.177 Sum_probs=64.9
Q ss_pred CCcCCCEEEE-EE--cCCCcEEEEEEccCCCCCCCCCCc-ccCCccccchHHHHHHHHHcCCcEEEEEcCCCCCCc----
Q 003286 204 RLVAGDSVLF-IW--NDKNQLLLGIRRANRPPTVMPSSV-LSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSE---- 275 (834)
Q Consensus 204 kL~aGDsVvF-~R--~~~g~L~VGIRRa~r~~~~~pssv-~s~~sm~~gvlaaAa~aaat~~~F~V~Y~PRas~sE---- 275 (834)
..+.||.|.+ |+ ..+|+++-.-+.... |..+ +....+-. -+.+|......|..++|..-|.....+
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~~-----P~~f~lG~g~vip-G~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~~ 97 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRNNGK-----PALFRLGDASLSE-GLEQHLLGLKVGDKTTFSLEPDAAFGVPSPD 97 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHHHTS-----CEEEETTSSSSCH-HHHHHHTTCCTTCEEEEEECGGGTTCCCCGG
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCCCCC-----CEEEEECCCCccH-HHHHHHcCCCCCCEEEEEEChHHhcCCCChH
Confidence 5678999988 44 357886654322211 1111 11112222 356677777888889998776654433
Q ss_pred --cccchHHHHHHHhcCCCccCCEEEEeeeccccccceeeEEEEEeec
Q 003286 276 --FVIPLAKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (834)
Q Consensus 276 --FVVp~~kyvkA~~~~~ws~GMRFrM~fEtEdss~rr~~GTI~gv~d 321 (834)
+.||++.+-.. ..+.+||+|.+ ++++. ..+.|+|+.|.+
T Consensus 98 lv~~vp~~~f~~~---~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 138 (169)
T 4dt4_A 98 LIQYFSRREFMDA---GEPEIGAIMLF--TAMDG--SEMPGVIREING 138 (169)
T ss_dssp GEEEEEGGGGTTT---CCCCTTCEEEE--ECTTS--CEEEEEEEEEET
T ss_pred HEEEeCHHHCCCc---CCCCCCcEEEE--ECCCC--CEEEEEEEEEcC
Confidence 56787765422 35899999876 55542 467899999985
No 27
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=30.71 E-value=96 Score=27.46 Aligned_cols=56 Identities=14% Similarity=0.200 Sum_probs=41.9
Q ss_pred ceEEEeccccceeeeccCCCCCHHHHHHHHHHhcCcCCccCCCCCCceEEEEEe-CCCCeEecccC
Q 003286 767 TFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVD-RENDVLLLGDG 831 (834)
Q Consensus 767 ~fVKV~m~G~iGRkIDL~~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvY~D-~EGD~mLvGDv 831 (834)
.=|||+=. +---|.+..=-+|.+|+..|.+-+.+.++ .=+|-|.| .+|.|++.+|.
T Consensus 6 ~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~-------~~~LsYk~~~s~~~vi~~d~ 62 (83)
T 1oey_A 6 YTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLE-------HTKLSYRPRDSNELVPLSED 62 (83)
T ss_dssp EEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGG-------GCCEEECCTTCSSCEECCTT
T ss_pred EEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcc-------eeEEEeeCCCCCCeeccChH
Confidence 45677766 67777788888999999999999987532 23588888 56777777765
No 28
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=30.23 E-value=2.4e+02 Score=27.13 Aligned_cols=61 Identities=18% Similarity=0.272 Sum_probs=43.6
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCCC------ccccchHHHHHHHhcCCCccCCEEEEeeeccccccceeeEEEEEeec
Q 003286 250 LAAAAHAAATNSRFTIFYNPRASPS------EFVIPLAKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (834)
Q Consensus 250 laaAa~aaat~~~F~V~Y~PRas~s------EFVVp~~kyvkA~~~~~ws~GMRFrM~fEtEdss~rr~~GTI~gv~d 321 (834)
+.+|......|..++|.--|-.... =..||++.+.+. .....+||+|.+ +++ .|+|+.|.+
T Consensus 57 ~eeaL~gm~~Ge~~~v~Ipp~~aYG~~~~~~V~~v~~~~f~~~--~~~~~~G~~~~~--~~~-------~~~V~~v~~ 123 (157)
T 3pr9_A 57 LDEAILEMDVGEEREVVLPPEKAFGKRDPSKIKLIPLSEFTKR--GIKPIKGLTITI--DGI-------PGKIVSINS 123 (157)
T ss_dssp HHHHHHHCCTTCEEEEEECGGGTTCCCCGGGEEEEEHHHHHHT--TCCCCTTCEEEE--TTE-------EEEEEEEET
T ss_pred HHHHHcCCCCCCEEEEEECcHHhcCCCChHhEEEcCHHHCCcc--cCCcCCCcEEEe--cCC-------CeEEEEEcC
Confidence 5778888889999999866544332 267888877543 245788999975 332 589999975
No 29
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.64 E-value=50 Score=28.48 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=31.3
Q ss_pred CCCccCCEEEEeeeccccccceeeEEEEEeecCCCCCCCCCCceeeEEeeCCC
Q 003286 290 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVKWPNSHWRSVKVGWDES 342 (834)
Q Consensus 290 ~~ws~GMRFrM~fEtEdss~rr~~GTI~gv~d~Dp~rWP~S~WR~LqV~WDe~ 342 (834)
..|.+|+++.-.|. |. .||-+||++|.+ + ....|..++-
T Consensus 8 ~~~kvGd~clA~ws-Dg---~~Y~A~I~~v~~-------~---~~~~V~f~Dy 46 (74)
T 2equ_A 8 FDFKAGEEVLARWT-DC---RYYPAKIEAINK-------E---GTFTVQFYDG 46 (74)
T ss_dssp CCCCTTCEEEEECS-SS---SEEEEEEEEEST-------T---SSEEEEETTS
T ss_pred CCCCCCCEEEEECC-CC---CEEEEEEEEECC-------C---CEEEEEEecC
Confidence 57999999999996 33 799999999963 1 3578888865
No 30
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.16 E-value=39 Score=33.19 Aligned_cols=26 Identities=23% Similarity=0.142 Sum_probs=22.2
Q ss_pred ccCCcCCCEEEEEEcCCCcEEEEEEc
Q 003286 202 AKRLVAGDSVLFIWNDKNQLLLGIRR 227 (834)
Q Consensus 202 ~KkL~aGDsVvF~R~~~g~L~VGIRR 227 (834)
-..|.+||.|-|+++.+|+|++.|--
T Consensus 115 l~~l~~Gd~ig~~~~~~G~l~~~iNg 140 (170)
T 2e63_A 115 LDQLGEGDRVGVERTVAGELRLWVNG 140 (170)
T ss_dssp GGGCCSSCCEEEEECTTSCEEEEESS
T ss_pred ccccCCCCEEEEEEcCCcEEEEEECC
Confidence 34678999999999999999998743
No 31
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=24.76 E-value=68 Score=28.47 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=30.8
Q ss_pred CCCccCCEEEEeeeccccccceeeEEEEEeecCCCCCCCCCCceeeEEeeCCCC
Q 003286 290 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVKWPNSHWRSVKVGWDEST 343 (834)
Q Consensus 290 ~~ws~GMRFrM~fEtEdss~rr~~GTI~gv~d~Dp~rWP~S~WR~LqV~WDe~~ 343 (834)
..|.+|+.+.-.|..+. .||.++|.+|... + ..+.|.-.+=+
T Consensus 9 ~~~kvGd~C~A~ys~Dg---~wYrA~I~~i~~~------~---~~~~V~fiDYG 50 (88)
T 1g5v_A 9 QQWKVGDKCSAIWSEDG---CIYPATIASIDFK------R---ETCVVVYTGYG 50 (88)
T ss_dssp CCCCSSCEEEEECTTTC---CEEEEEEEEEETT------T---TEEEEEETTTC
T ss_pred CCCCCCCEEEEEECCCC---CEEEEEEEEecCC------C---CEEEEEEecCC
Confidence 47999999999994333 7999999999742 1 24567775543
No 32
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=21.30 E-value=48 Score=28.59 Aligned_cols=33 Identities=12% Similarity=0.275 Sum_probs=28.5
Q ss_pred cceecccCCcCCCEEEEEEc-CCCcEEEEEEccC
Q 003286 197 SVFVSAKRLVAGDSVLFIWN-DKNQLLLGIRRAN 229 (834)
Q Consensus 197 s~FV~~KkL~aGDsVvF~R~-~~g~L~VGIRRa~ 229 (834)
.+++++-+|+.||.+...=+ .+|++.++.+|-+
T Consensus 31 aeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVK 64 (68)
T 3o27_A 31 KDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVK 64 (68)
T ss_dssp HHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECG
T ss_pred HHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhh
Confidence 48999999999999998765 5888999999954
No 33
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=20.45 E-value=80 Score=30.90 Aligned_cols=22 Identities=14% Similarity=0.341 Sum_probs=19.5
Q ss_pred cCCCEEEEEEcCCCcEEEEEEc
Q 003286 206 VAGDSVLFIWNDKNQLLLGIRR 227 (834)
Q Consensus 206 ~aGDsVvF~R~~~g~L~VGIRR 227 (834)
..||.+.|+++.+|+|++.|--
T Consensus 107 ~~g~~l~f~v~~~G~l~~~iNg 128 (168)
T 2yue_A 107 EKDNILYYYVNGAGDVIYGINN 128 (168)
T ss_dssp CSSCEEEEEECTTSEEEEEESS
T ss_pred cCCCEEEEEEcCCCEEEEEECC
Confidence 6799999999999999998843
No 34
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=20.42 E-value=32 Score=27.71 Aligned_cols=13 Identities=8% Similarity=0.179 Sum_probs=11.2
Q ss_pred EEEEEeCCCCeEe
Q 003286 815 QLVFVDRENDVLL 827 (834)
Q Consensus 815 ~lvY~D~EGD~mL 827 (834)
.++|+|.+|||-.
T Consensus 20 ~V~YtD~dG~WGV 32 (46)
T 1e8p_A 20 KVEYTDASGQWGV 32 (46)
T ss_dssp CEEEEETTEEEEE
T ss_pred eEEEEcCCCcccc
Confidence 4999999999954
No 35
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=20.41 E-value=1.2e+02 Score=37.93 Aligned_cols=49 Identities=18% Similarity=0.330 Sum_probs=34.2
Q ss_pred cCCCccCCEEEEeeeccccccceeeEEEEEeecCCCCCCCCCCceeeEEeeCCCCCC
Q 003286 289 HTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVKWPNSHWRSVKVGWDESTAG 345 (834)
Q Consensus 289 ~~~ws~GMRFrM~fEtEdss~rr~~GTI~gv~d~Dp~rWP~S~WR~LqV~WDe~~~~ 345 (834)
...+..|+|+.|.=+.-..+. -..|||+||.... .=.+|+|=||++=.+
T Consensus 1063 ~Q~F~LGDRVv~VqdsG~VPl-~~kGTVVGi~~~~-------~~~~ldVvFD~~F~~ 1111 (1155)
T 3pie_A 1063 SQRFHLGDRVMYIQDSGKVPL-HSKGTVVGYTSIG-------KNVSIQVLFDNEIIA 1111 (1155)
T ss_pred CCcccCCCeEEEecCCCCCcc-ccceEEEEEecCC-------CceEEEEEeccCccC
Confidence 456999999998754322221 2489999998632 246899999988543
Done!