Query 003289
Match_columns 833
No_of_seqs 186 out of 1487
Neff 9.7
Searched_HMMs 46136
Date Thu Mar 28 20:40:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003289.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003289hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2022 Nuclear transport rece 100.0 8.7E-77 1.9E-81 640.5 69.1 779 3-832 5-859 (982)
2 KOG2021 Nuclear mRNA export fa 100.0 1E-67 2.2E-72 558.7 57.9 749 4-805 2-828 (980)
3 KOG2081 Nuclear transport regu 100.0 2.7E-62 5.8E-67 510.0 48.4 548 24-630 2-557 (559)
4 COG5101 CRM1 Importin beta-rel 100.0 5.6E-49 1.2E-53 408.3 56.5 794 4-828 13-896 (1053)
5 KOG2023 Nuclear transport rece 100.0 4.1E-42 9E-47 360.3 41.8 700 4-829 12-809 (885)
6 KOG2171 Karyopherin (importin) 100.0 1.2E-39 2.6E-44 365.9 52.4 600 3-730 2-617 (1075)
7 KOG1991 Nuclear transport rece 100.0 4.3E-30 9.3E-35 283.5 60.9 722 6-822 5-780 (1010)
8 KOG2020 Nuclear transport rece 100.0 3.5E-29 7.6E-34 288.3 51.5 789 4-829 9-877 (1041)
9 KOG1992 Nuclear export recepto 100.0 1E-28 2.2E-33 266.4 49.1 683 1-829 1-744 (960)
10 KOG1241 Karyopherin (importin) 100.0 2.7E-28 5.9E-33 261.4 51.4 630 17-766 12-687 (859)
11 COG5215 KAP95 Karyopherin (imp 99.9 1.3E-21 2.8E-26 203.3 53.0 625 17-766 16-687 (858)
12 COG5656 SXM1 Importin, protein 99.9 9.6E-17 2.1E-21 172.4 55.9 651 17-749 14-714 (970)
13 KOG2274 Predicted importin 9 [ 99.8 4.5E-14 9.8E-19 155.7 51.4 652 5-767 4-758 (1005)
14 KOG1410 Nuclear transport rece 99.8 6.7E-13 1.4E-17 141.3 58.0 338 1-347 1-386 (1082)
15 KOG1993 Nuclear transport rece 99.7 1.9E-13 4.1E-18 148.6 43.7 170 7-189 2-181 (978)
16 PF08389 Xpo1: Exportin 1-like 99.7 1.9E-17 4.2E-22 156.1 11.6 141 98-243 1-148 (148)
17 COG5657 CSE1 CAS/CSE protein i 99.5 1.3E-09 2.8E-14 121.7 43.7 144 1-151 1-150 (947)
18 KOG2171 Karyopherin (importin) 99.4 5.1E-07 1.1E-11 104.3 59.2 330 464-810 400-775 (1075)
19 KOG1241 Karyopherin (importin) 99.1 3.8E-05 8.3E-10 85.0 48.3 391 372-821 399-839 (859)
20 KOG2023 Nuclear transport rece 99.1 7.7E-07 1.7E-11 96.2 34.1 288 508-821 371-728 (885)
21 KOG1824 TATA-binding protein-i 99.0 5.4E-05 1.2E-09 85.5 45.9 571 51-730 16-622 (1233)
22 PF03810 IBN_N: Importin-beta 99.0 1.1E-09 2.5E-14 89.8 7.3 67 26-92 1-76 (77)
23 PF08506 Cse1: Cse1; InterPro 98.9 2.4E-07 5.2E-12 99.1 23.5 206 317-558 142-370 (370)
24 PF08767 CRM1_C: CRM1 C termin 98.3 2E-06 4.3E-11 90.8 8.9 115 713-831 65-185 (319)
25 KOG1824 TATA-binding protein-i 98.2 0.023 4.9E-07 65.2 44.8 162 465-634 491-663 (1233)
26 PF03378 CAS_CSE1: CAS/CSE pro 98.0 2.8E-05 6.1E-10 85.2 11.0 193 566-820 17-211 (435)
27 KOG0915 Uncharacterized conser 98.0 0.004 8.7E-08 74.6 28.2 155 429-585 1014-1182(1702)
28 KOG0213 Splicing factor 3b, su 98.0 0.052 1.1E-06 60.7 38.1 171 429-612 736-915 (1172)
29 KOG1242 Protein containing ada 97.8 0.001 2.3E-08 72.9 18.2 169 429-612 239-447 (569)
30 PF01602 Adaptin_N: Adaptin N 97.5 0.33 7.1E-06 56.1 40.0 454 16-605 52-520 (526)
31 COG5215 KAP95 Karyopherin (imp 97.3 0.4 8.6E-06 52.4 47.8 235 549-802 571-814 (858)
32 PTZ00429 beta-adaptin; Provisi 96.5 2.9 6.2E-05 49.6 44.2 127 16-154 78-209 (746)
33 KOG1242 Protein containing ada 96.3 1.2 2.6E-05 49.6 23.6 244 465-723 187-461 (569)
34 PF12755 Vac14_Fab1_bd: Vacuol 96.2 0.026 5.6E-07 47.9 8.1 75 510-586 4-79 (97)
35 PF14500 MMS19_N: Dos2-interac 95.9 0.43 9.3E-06 48.9 16.9 236 505-763 12-254 (262)
36 KOG0212 Uncharacterized conser 95.9 0.68 1.5E-05 50.8 18.6 322 468-821 15-387 (675)
37 PF10508 Proteasom_PSMB: Prote 95.9 2.8 6.2E-05 47.7 25.2 236 466-730 51-301 (503)
38 PF03378 CAS_CSE1: CAS/CSE pro 95.8 0.27 5.9E-06 54.3 15.7 248 532-805 23-281 (435)
39 KOG1059 Vesicle coat complex A 95.7 5.2 0.00011 45.5 36.8 222 80-344 142-364 (877)
40 PF10508 Proteasom_PSMB: Prote 95.6 5.5 0.00012 45.4 30.8 339 429-801 58-424 (503)
41 PF01602 Adaptin_N: Adaptin N 95.2 5.5 0.00012 45.9 25.2 197 431-663 98-297 (526)
42 smart00802 UME Domain in UVSB 95.2 0.26 5.6E-06 42.5 10.2 92 533-631 9-105 (107)
43 PTZ00429 beta-adaptin; Provisi 95.0 10 0.00022 45.0 28.7 100 464-574 231-337 (746)
44 KOG1062 Vesicle coat complex A 94.9 9.6 0.00021 44.1 38.8 95 471-566 441-547 (866)
45 PF12460 MMS19_C: RNAPII trans 94.8 8.3 0.00018 42.8 31.9 196 465-681 202-411 (415)
46 PF12348 CLASP_N: CLASP N term 94.8 0.35 7.7E-06 48.8 12.1 137 464-612 18-163 (228)
47 PF12755 Vac14_Fab1_bd: Vacuol 94.5 0.095 2.1E-06 44.4 5.9 89 470-561 3-94 (97)
48 KOG0213 Splicing factor 3b, su 94.4 12 0.00026 42.9 27.8 337 429-798 496-871 (1172)
49 KOG1991 Nuclear transport rece 94.3 15 0.00032 43.7 57.7 126 505-638 431-559 (1010)
50 PF08064 UME: UME (NUC010) dom 94.1 0.68 1.5E-05 40.2 10.6 92 533-631 9-105 (107)
51 PF13513 HEAT_EZ: HEAT-like re 94.0 0.058 1.3E-06 40.4 3.2 54 506-561 1-55 (55)
52 KOG0212 Uncharacterized conser 94.0 12 0.00027 41.4 27.0 216 490-723 204-423 (675)
53 COG5181 HSH155 U2 snRNP splice 93.4 7.9 0.00017 43.2 18.9 307 372-750 597-917 (975)
54 PF12348 CLASP_N: CLASP N term 93.3 3.6 7.8E-05 41.4 16.1 156 533-712 51-211 (228)
55 PF08767 CRM1_C: CRM1 C termin 93.3 10 0.00022 40.3 19.9 171 193-386 42-221 (319)
56 cd00020 ARM Armadillo/beta-cat 93.1 0.2 4.4E-06 44.3 5.8 95 465-563 19-120 (120)
57 KOG1059 Vesicle coat complex A 92.7 22 0.00049 40.7 23.4 94 476-577 129-224 (877)
58 KOG0166 Karyopherin (importin) 92.6 2.8 6E-05 46.5 14.5 138 547-707 124-266 (514)
59 KOG0166 Karyopherin (importin) 92.2 8 0.00017 43.0 17.4 138 466-610 165-309 (514)
60 KOG2274 Predicted importin 9 [ 92.2 30 0.00064 40.9 23.2 243 489-750 525-782 (1005)
61 COG5064 SRP1 Karyopherin (impo 91.4 5.7 0.00012 41.0 13.9 243 465-734 128-389 (526)
62 PF02985 HEAT: HEAT repeat; I 91.4 0.22 4.9E-06 32.1 2.8 30 536-565 1-31 (31)
63 PRK09687 putative lyase; Provi 90.7 23 0.00051 36.8 19.0 120 465-607 66-186 (280)
64 PF13513 HEAT_EZ: HEAT-like re 90.6 0.23 5E-06 37.1 2.7 52 550-606 3-54 (55)
65 PLN03200 cellulose synthase-in 90.0 80 0.0017 42.0 49.9 210 465-708 542-765 (2102)
66 COG5181 HSH155 U2 snRNP splice 90.0 38 0.00082 38.2 22.6 97 488-586 598-699 (975)
67 KOG0915 Uncharacterized conser 89.9 64 0.0014 40.6 49.7 350 172-581 990-1362(1702)
68 PF08506 Cse1: Cse1; InterPro 89.8 33 0.00072 37.2 21.2 123 695-824 228-359 (370)
69 PF08167 RIX1: rRNA processing 89.2 6.1 0.00013 37.4 11.7 132 445-583 22-163 (165)
70 PLN03200 cellulose synthase-in 89.1 93 0.002 41.4 52.9 230 467-724 460-703 (2102)
71 PF04826 Arm_2: Armadillo-like 88.8 26 0.00057 35.7 16.7 133 465-610 25-164 (254)
72 KOG1992 Nuclear export recepto 88.5 58 0.0012 38.2 26.0 291 493-817 5-344 (960)
73 PRK09687 putative lyase; Provi 88.1 32 0.00069 35.8 17.2 213 7-247 25-249 (280)
74 PF12717 Cnd1: non-SMC mitotic 88.0 14 0.00031 35.5 13.6 146 473-628 8-156 (178)
75 PF10274 ParcG: Parkin co-regu 87.0 5.2 0.00011 38.1 9.5 88 534-626 37-128 (183)
76 PF05918 API5: Apoptosis inhib 86.8 61 0.0013 36.9 19.3 123 672-801 215-349 (556)
77 PF12460 MMS19_C: RNAPII trans 86.3 59 0.0013 36.1 26.9 213 491-725 190-412 (415)
78 PF08623 TIP120: TATA-binding 85.6 4.1 9E-05 38.3 8.0 76 507-586 42-117 (169)
79 KOG2956 CLIP-associating prote 85.2 44 0.00096 36.5 16.2 176 514-722 315-493 (516)
80 KOG4541 Nuclear transport rece 85.0 70 0.0015 35.7 17.6 90 550-639 313-405 (748)
81 KOG1058 Vesicle coat complex C 84.9 85 0.0018 36.5 19.1 68 505-581 112-180 (948)
82 PF14500 MMS19_N: Dos2-interac 84.6 52 0.0011 33.8 18.8 141 464-612 10-156 (262)
83 KOG2256 Predicted protein invo 83.2 92 0.002 35.7 22.8 219 505-732 255-482 (661)
84 PF08064 UME: UME (NUC010) dom 82.5 27 0.00059 30.2 11.4 99 621-728 6-105 (107)
85 PF12717 Cnd1: non-SMC mitotic 82.2 41 0.00089 32.2 13.8 108 594-725 2-111 (178)
86 KOG1967 DNA repair/transcripti 81.4 15 0.00033 43.2 11.8 167 539-725 819-1001(1030)
87 KOG2213 Apoptosis inhibitor 5/ 80.6 86 0.0019 33.6 20.5 269 507-803 39-324 (460)
88 KOG4653 Uncharacterized conser 80.6 95 0.002 36.8 17.4 188 506-719 741-930 (982)
89 COG5064 SRP1 Karyopherin (impo 80.5 7.2 0.00016 40.3 7.9 136 468-611 172-316 (526)
90 KOG0168 Putative ubiquitin fus 79.2 1.4E+02 0.0031 35.3 22.2 159 546-732 225-393 (1051)
91 KOG1240 Protein kinase contain 78.8 1.5E+02 0.0033 36.7 18.8 95 505-607 436-535 (1431)
92 PF13646 HEAT_2: HEAT repeats; 78.7 17 0.00038 29.7 8.8 87 8-110 2-88 (88)
93 cd00020 ARM Armadillo/beta-cat 78.6 5.1 0.00011 35.1 5.9 107 491-607 8-118 (120)
94 smart00802 UME Domain in UVSB 77.8 46 0.00099 28.8 11.1 71 651-727 33-104 (107)
95 PF10363 DUF2435: Protein of u 77.8 21 0.00045 30.0 8.7 74 543-622 11-85 (92)
96 PF11865 DUF3385: Domain of un 77.4 64 0.0014 30.3 13.2 37 573-614 8-44 (160)
97 KOG2753 Uncharacterized conser 77.2 74 0.0016 33.2 13.8 74 532-612 104-179 (378)
98 PF12719 Cnd3: Nuclear condens 76.2 1.1E+02 0.0023 32.2 17.8 127 474-610 4-144 (298)
99 PF01603 B56: Protein phosphat 75.5 1.4E+02 0.003 33.1 17.5 96 652-750 274-371 (409)
100 KOG1061 Vesicle coat complex A 73.7 54 0.0012 38.2 13.2 63 714-787 455-518 (734)
101 KOG1020 Sister chromatid cohes 73.3 2.7E+02 0.0059 35.5 25.9 56 504-565 867-923 (1692)
102 PF13646 HEAT_2: HEAT repeats; 72.5 12 0.00026 30.7 6.2 56 7-64 32-87 (88)
103 KOG1943 Beta-tubulin folding c 72.2 2.4E+02 0.0053 34.5 24.4 132 468-611 443-613 (1133)
104 PF13251 DUF4042: Domain of un 70.0 94 0.002 29.9 12.2 106 544-663 49-175 (182)
105 KOG1240 Protein kinase contain 69.8 92 0.002 38.4 14.2 152 78-250 570-727 (1431)
106 KOG1993 Nuclear transport rece 69.6 2.4E+02 0.0052 33.4 18.3 154 549-721 502-658 (978)
107 PF08167 RIX1: rRNA processing 65.9 1.2E+02 0.0026 28.6 14.0 96 653-750 45-148 (165)
108 KOG2956 CLIP-associating prote 64.3 2.3E+02 0.005 31.3 17.2 163 571-760 325-491 (516)
109 KOG0168 Putative ubiquitin fus 61.8 3.4E+02 0.0075 32.4 24.1 205 466-689 225-439 (1051)
110 PF11229 DUF3028: Protein of u 61.7 2.7E+02 0.0058 31.2 18.5 123 489-626 149-280 (589)
111 KOG1943 Beta-tubulin folding c 61.6 3.8E+02 0.0083 32.9 22.5 236 491-745 338-612 (1133)
112 KOG2160 Armadillo/beta-catenin 61.0 1.4E+02 0.003 31.7 12.2 137 464-614 94-245 (342)
113 PF02985 HEAT: HEAT repeat; I 59.7 13 0.00028 23.7 3.0 21 464-484 11-31 (31)
114 COG5240 SEC21 Vesicle coat com 55.9 1.1E+02 0.0025 34.3 10.9 87 470-562 465-554 (898)
115 PF10521 DUF2454: Protein of u 55.4 1.8E+02 0.0039 30.3 12.4 54 532-585 116-176 (282)
116 KOG2059 Ras GTPase-activating 55.0 2.4E+02 0.0053 32.7 13.5 93 532-633 285-391 (800)
117 cd03568 VHS_STAM VHS domain fa 54.9 1.4E+02 0.0031 27.4 10.2 75 534-612 36-113 (144)
118 KOG4224 Armadillo repeat prote 54.8 2.1E+02 0.0046 30.4 12.1 181 6-206 251-487 (550)
119 PF05918 API5: Apoptosis inhib 53.6 2.1E+02 0.0044 32.9 12.9 17 780-796 237-253 (556)
120 cd08050 TAF6 TATA Binding Prot 52.4 1.9E+02 0.0042 31.0 12.3 127 447-587 177-321 (343)
121 KOG4653 Uncharacterized conser 51.3 5.1E+02 0.011 31.1 18.5 124 476-612 791-921 (982)
122 KOG2022 Nuclear transport rece 50.8 5.2E+02 0.011 31.1 21.4 148 542-710 473-622 (982)
123 PLN03076 ARF guanine nucleotid 50.1 7.8E+02 0.017 33.0 25.0 58 549-610 1152-1213(1780)
124 KOG2025 Chromosome condensatio 49.8 4.9E+02 0.011 30.5 22.1 117 24-148 64-188 (892)
125 PF10274 ParcG: Parkin co-regu 47.9 2.6E+02 0.0057 26.8 11.9 69 654-725 59-130 (183)
126 KOG1248 Uncharacterized conser 47.2 6.7E+02 0.014 31.3 54.3 130 692-832 711-848 (1176)
127 KOG1058 Vesicle coat complex C 47.0 5.5E+02 0.012 30.3 21.2 29 317-345 318-346 (948)
128 cd05394 RasGAP_RASA2 RASA2 (or 45.3 3.9E+02 0.0085 28.1 14.4 32 532-564 2-33 (313)
129 PRK13800 putative oxidoreducta 45.2 7E+02 0.015 31.0 18.3 200 9-246 625-834 (897)
130 PF08161 NUC173: NUC173 domain 45.0 3.1E+02 0.0067 26.8 14.8 58 555-617 21-78 (198)
131 PF14668 RICTOR_V: Rapamycin-i 43.7 30 0.00065 27.5 3.3 52 469-521 3-58 (73)
132 COG5096 Vesicle coat complex, 43.7 5.1E+02 0.011 31.0 14.5 126 17-154 66-196 (757)
133 cd03569 VHS_Hrs_Vps27p VHS dom 43.2 2.6E+02 0.0057 25.6 10.2 73 534-611 40-116 (142)
134 KOG2753 Uncharacterized conser 43.2 4.2E+02 0.0092 27.9 15.5 65 592-670 58-122 (378)
135 KOG1078 Vesicle coat complex C 43.0 2.2E+02 0.0047 33.6 11.0 134 403-572 403-541 (865)
136 PF11865 DUF3385: Domain of un 41.9 1E+02 0.0022 29.0 7.2 72 534-610 85-158 (160)
137 smart00288 VHS Domain present 41.0 2.7E+02 0.0059 25.1 9.7 75 533-610 35-112 (133)
138 PF09184 PPP4R2: PPP4R2; Inte 40.4 2.4E+02 0.0052 29.4 10.3 104 4-111 2-109 (288)
139 PF00790 VHS: VHS domain; Int 39.3 1.7E+02 0.0037 26.6 8.2 77 532-611 39-120 (140)
140 PF10363 DUF2435: Protein of u 38.4 2E+02 0.0044 24.1 7.7 84 39-135 4-87 (92)
141 KOG2081 Nuclear transport regu 36.4 3E+02 0.0065 31.1 10.6 143 678-828 114-267 (559)
142 KOG1967 DNA repair/transcripti 36.3 2.2E+02 0.0047 34.3 9.8 84 532-617 906-990 (1030)
143 KOG2160 Armadillo/beta-catenin 34.6 4.9E+02 0.011 27.7 11.3 108 4-117 78-199 (342)
144 PF04510 DUF577: Family of unk 34.3 4.1E+02 0.0089 25.2 16.5 65 82-152 3-70 (174)
145 KOG0889 Histone acetyltransfer 34.0 1.6E+03 0.036 32.1 18.8 159 445-612 1030-1204(3550)
146 PF00514 Arm: Armadillo/beta-c 33.0 68 0.0015 21.8 3.5 25 539-563 16-41 (41)
147 PF04826 Arm_2: Armadillo-like 32.7 5.6E+02 0.012 26.2 15.3 97 10-113 58-162 (254)
148 PF08389 Xpo1: Exportin 1-like 32.0 83 0.0018 28.6 5.0 119 694-814 4-133 (148)
149 cd05134 RasGAP_RASA3 RASA3 (or 31.8 6.4E+02 0.014 26.6 12.0 31 532-563 2-32 (310)
150 KOG1060 Vesicle coat complex A 31.6 9.7E+02 0.021 28.7 16.7 89 505-607 156-244 (968)
151 PF10441 Urb2: Urb2/Npa2 famil 31.4 5.3E+02 0.012 25.6 16.8 47 566-615 146-192 (223)
152 cd00864 PI3Ka Phosphoinositide 30.9 3.8E+02 0.0082 24.9 9.0 73 8-91 42-114 (152)
153 KOG2032 Uncharacterized conser 30.1 7.2E+02 0.016 27.8 11.9 121 464-586 228-353 (533)
154 KOG4224 Armadillo repeat prote 29.4 1.7E+02 0.0036 31.1 6.8 88 491-580 209-301 (550)
155 COG5101 CRM1 Importin beta-rel 28.1 9.9E+02 0.022 27.7 23.0 68 492-563 190-261 (1053)
156 cd03561 VHS VHS domain family; 26.6 4.7E+02 0.01 23.5 10.1 78 534-613 36-116 (133)
157 KOG2259 Uncharacterized conser 26.5 4.5E+02 0.0096 30.6 9.9 119 443-580 409-528 (823)
158 KOG2199 Signal transducing ada 26.1 2.9E+02 0.0064 29.7 7.9 102 519-633 32-138 (462)
159 PF12783 Sec7_N: Guanine nucle 24.7 3.8E+02 0.0083 25.1 8.3 57 550-609 89-146 (168)
160 PF11698 V-ATPase_H_C: V-ATPas 24.1 2.9E+02 0.0062 24.5 6.4 66 6-73 44-119 (119)
161 TIGR03504 FimV_Cterm FimV C-te 23.9 1.5E+02 0.0032 21.0 3.8 31 2-32 13-43 (44)
162 cd03562 CID CID (CTD-Interacti 23.7 4.3E+02 0.0093 22.8 7.8 67 718-794 36-105 (114)
163 cd03567 VHS_GGA VHS domain fam 23.5 5.7E+02 0.012 23.3 11.0 78 534-611 37-118 (139)
164 PF14631 FancD2: Fanconi anaem 23.3 1.8E+03 0.039 29.1 18.1 75 673-748 428-505 (1426)
165 PRK04964 hypothetical protein; 23.1 1.7E+02 0.0036 22.2 3.9 49 512-562 4-59 (66)
166 KOG2032 Uncharacterized conser 23.1 1.1E+03 0.024 26.5 25.2 99 532-639 255-355 (533)
167 KOG0414 Chromosome condensatio 22.7 3.9E+02 0.0085 33.2 9.1 151 398-580 893-1044(1251)
168 PF12726 SEN1_N: SEN1 N termin 22.7 1.4E+03 0.03 27.5 23.8 149 532-687 121-277 (727)
169 KOG0889 Histone acetyltransfer 22.0 2.6E+03 0.055 30.4 17.1 170 564-750 622-797 (3550)
170 KOG0211 Protein phosphatase 2A 22.0 1.2E+03 0.025 28.3 12.8 151 445-610 511-665 (759)
171 cd00872 PI3Ka_I Phosphoinositi 21.8 4.1E+02 0.0089 25.3 7.5 46 18-65 51-96 (171)
172 KOG2021 Nuclear mRNA export fa 21.7 1.4E+03 0.031 27.2 42.0 139 445-585 638-790 (980)
173 cd03569 VHS_Hrs_Vps27p VHS dom 21.6 6.3E+02 0.014 23.1 8.7 73 473-547 61-140 (142)
174 PF07571 DUF1546: Protein of u 21.5 3.9E+02 0.0084 22.3 6.6 39 549-587 21-59 (92)
175 KOG3723 PH domain protein Melt 21.2 6.4E+02 0.014 28.6 9.6 67 473-548 182-249 (851)
176 cd00870 PI3Ka_III Phosphoinosi 21.1 4.5E+02 0.0097 24.9 7.6 47 18-66 58-104 (166)
177 PF11698 V-ATPase_H_C: V-ATPas 21.0 2.4E+02 0.0051 25.0 5.3 78 482-563 35-115 (119)
178 PF08158 NUC130_3NT: NUC130/3N 20.7 3.1E+02 0.0067 20.2 5.0 35 79-113 12-47 (52)
179 cd07064 AlkD_like_1 A new stru 20.2 4.4E+02 0.0095 25.9 7.8 54 14-69 20-75 (208)
No 1
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.7e-77 Score=640.46 Aligned_cols=779 Identities=20% Similarity=0.330 Sum_probs=641.1
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHH
Q 003289 3 LQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG 82 (833)
Q Consensus 3 ~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~~ 82 (833)
.+++|++++..+|++++++..+.+++||++.|++|.+|.++++|++. ++..++|||||.||+.||+++|++++++++..
T Consensus 5 ~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~-~k~~evqyFGAltL~~ki~~~~e~~~~~~~~q 83 (982)
T KOG2022|consen 5 LIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQP-DKSSEVQYFGALTLHDKINTRWEECPANEAVQ 83 (982)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCC-CchhHHHHHhHHHHHHHHHhhhccCChhHHHH
Confidence 38999999999999999999999999999999999999999999985 67889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC--CC-----CcHHHHHHHHhhchhhc
Q 003289 83 LQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS--HP-----EFVPGFLELLTVLPEEV 155 (833)
Q Consensus 83 lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~--~~-----~~~~~~L~iL~~l~Ee~ 155 (833)
|+..++..+..++.+|+.|.+|+|.++|.+++++-++.||+ .+.+++..+.. +| -.+..+|+.|+.+|+|.
T Consensus 84 L~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~--ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~p~e~ 161 (982)
T KOG2022|consen 84 LKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPT--AIQDVIPTLQGQASPLVLADINCEILLEVLSFMPAEF 161 (982)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCc--hHHHHHHHHhcccCccccchhhHHHHHHHhccCcHhh
Confidence 99999999999999999999999999999999998899999 78888887765 33 24688999999999999
Q ss_pred ccccccCChhHHHHHHHHHHHHHHHHHHHHHhhhhhh----------HHHHHHHHHHHHHhhccCCCCccccccchhHHH
Q 003289 156 FNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----------ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLT 225 (833)
Q Consensus 156 ~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~----------~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~ 225 (833)
.+.++ +-.||..++.+|......+..++..++... -....+++|+.+|+.+. ..+. .....+++.
T Consensus 162 q~~~l--~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i-~~~~--~~c~~i~~~ 236 (982)
T KOG2022|consen 162 QHVTL--PLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYI-SLTG--MDCDQITQV 236 (982)
T ss_pred hhccc--hhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHh-cccc--ccHHHHHHH
Confidence 87665 356788999999999999998888887653 24578999999999953 2332 333456666
Q ss_pred HHhccCC-----------------cchHHHHHHHHHHHHhhhcc-CCCCCCCCchhHHHHHHHHHHh--hH--HHhhhcc
Q 003289 226 ALSSLHS-----------------EILSEASVNVISELIHYSAA-GSSGGATVNMPLIQVIVPQIMS--LK--AHLTDSS 283 (833)
Q Consensus 226 ~~~~L~~-----------------~~~~~~a~~~l~~ii~~~~~-~~~~~~~~~~~~i~~l~~~~~~--l~--~~l~~~~ 283 (833)
++..++. ..+++..+......+..... ..+ +....+-.++.+.+. .. +...+++
T Consensus 237 ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~----nti~~li~i~~~~l~e~~~~~~~~e~~d 312 (982)
T KOG2022|consen 237 LLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYR----NTITLLISICLGILQEVSGKIQEEENAD 312 (982)
T ss_pred HHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhcc----chHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 6666651 11222222222222211110 000 112222233333222 11 2222333
Q ss_pred CCHHHHHHHHHHHHHHhhHHHHHHHcCC------chhHHHHHHHHhhhcCCC-----cchhhhhHHHHHHHHHHHhhccc
Q 003289 284 KDEEDVKAIARLFADMGDSYVELIATGS------DESMLIVHALLEVASHPE-----YDIASMTFNFWHSLQVILTKRDS 352 (833)
Q Consensus 284 ~d~~~~~~l~~l~~~~~~~~~~~l~~~~------~~~~~~l~~ll~~~~~~~-----~~v~~~~l~fw~~l~~~~~~~~~ 352 (833)
..+|....++++++..++++.+.+.+.. +.+.++++.++.+++.|+ +.+|..++.||+++.+++....
T Consensus 313 ~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~- 391 (982)
T KOG2022|consen 313 ASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTI- 391 (982)
T ss_pred chhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhh-
Confidence 3367778999999999999888776422 346788999999999884 6789999999999999886421
Q ss_pred ccccCcccchHHHHHHHHHHhHHHHHHHHHHHHhhccCCCC--CCCCChhhhHHhHhhhhcccccCCccchhhhhhhchh
Q 003289 353 YISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVA 430 (833)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d--~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~ 430 (833)
++ +.+.+.+..-+++|.+++++++.|+.+|.+ +..|+.|+++.|+.||+| ++
T Consensus 392 -----~e----~~~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~d-----------------iS 445 (982)
T KOG2022|consen 392 -----NE----TQQIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKD-----------------IS 445 (982)
T ss_pred -----hc----cCCcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHH-----------------HH
Confidence 11 111223333349999999999999999974 678999999999999999 99
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhccCCC---ChHH
Q 003289 431 DVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLP---QQPQ 507 (833)
Q Consensus 431 d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~~l~---~~~~ 507 (833)
|+++++|+++| +.++..+++.+.+.+..+...+.+|.+.|+++|++.++++.+..+++..++.+|+...+.+ .+|.
T Consensus 446 D~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~q 524 (982)
T KOG2022|consen 446 DLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQ 524 (982)
T ss_pred HHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChh
Confidence 99999999999 8899999999998876544346789999999999999999999999999999999886543 1799
Q ss_pred HHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCc
Q 003289 508 LLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGE 587 (833)
Q Consensus 508 v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~ 587 (833)
+..|+..+||.++.|+..||. ++++.++.+++++++++ ....|...+.++|++|+.+|.||.++++..+..+++..
T Consensus 525 l~~Tss~~igs~s~~l~e~P~---~ln~sl~~L~~~Lh~sk-~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~ 600 (982)
T KOG2022|consen 525 LLSTSSDLIGSLSNWLGEHPM---YLNPSLPLLFQGLHNSK-ESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKS 600 (982)
T ss_pred HHHHHHHHHHHHHHHHhcCCc---ccCchHHHHHHHhcCch-HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhccc
Confidence 999999999999999999997 99999999999999988 78888888999999999999999999999999998864
Q ss_pred CCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCc
Q 003289 588 GSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHP 667 (833)
Q Consensus 588 ~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 667 (833)
.+.++++.++|.+||+|++...+|++.+|+.++++|+++.++.++....+.++ +......-+.+++.+|.+...+
T Consensus 601 ---~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e--~~l~~~~~l~~iS~LftSL~~~ 675 (982)
T KOG2022|consen 601 ---NAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQE--NHLRIAFQLNTISALFTSLINK 675 (982)
T ss_pred ---ccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHH--HHHHHHHHHHHHHHHHhccCCC
Confidence 57789999999999999999999999999999999999999999876654322 2333455678999999886421
Q ss_pred ------------------ccHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHH
Q 003289 668 ------------------EAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFM-GITIGAILEEIQGLY 728 (833)
Q Consensus 668 ------------------~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~~~~~~-~~~l~~l~~~l~~~~ 728 (833)
.|++.+.++++|++..+++.+.++.+|+|++|..+++.++..++.+ .|++|.++.++.. |
T Consensus 676 ~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r-~ 754 (982)
T KOG2022|consen 676 KDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVR-F 754 (982)
T ss_pred CccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHH-h
Confidence 2678899999999999999999999999999999999998877666 8999999999988 9
Q ss_pred hhcCCccHhhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCccCC-cC
Q 003289 729 QQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIP-SS 807 (833)
Q Consensus 729 ~~~~~~~~L~~~~~li~~fg~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~~~~~p~~~~~-~~ 807 (833)
.+.+...-+.+..+++..+..++.+.+...+.+...++.++-++++.. +.++||+...+++|++.++++.|+.+.+ ..
T Consensus 755 ~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~-f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~ 833 (982)
T KOG2022|consen 755 LTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHP-FSNQPDIYLQLIGFVRQILKKIPKFLEPSML 833 (982)
T ss_pred ccchHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccC-CCCCchHHHHHHHHHHHHHHhCcCccccchH
Confidence 988888889999999998888888999999999999999998888733 7999999999999999999999999987 45
Q ss_pred CcHHH-HHHHHHcccccCchhhhhhc
Q 003289 808 VFPSL-VDCSMIGITVQHRRRILICK 832 (833)
Q Consensus 808 ~l~~~-~~~~~~~l~~~~~~~~~~~~ 832 (833)
.+.++ +.|++..|+.+++...+|+-
T Consensus 834 ~~ts~i~~~a~~ll~~pE~~~i~aa~ 859 (982)
T KOG2022|consen 834 AFTSLILICAFILLNSPEPTTIRAAS 859 (982)
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 56665 45999999999999998863
No 2
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-67 Score=558.75 Aligned_cols=749 Identities=15% Similarity=0.184 Sum_probs=590.6
Q ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHH
Q 003289 4 QNTVKEALNALYHH-PDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG 82 (833)
Q Consensus 4 ~~~v~~al~~ly~~-~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~~ 82 (833)
+++|+|||.+...+ .|+..|+||-+|++++|.+|.||++|.+++...++++.+||||.|||.++++..+++.+..+...
T Consensus 2 mddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne~nl~elql 81 (980)
T KOG2021|consen 2 MDDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNEANLNELQL 81 (980)
T ss_pred chHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccCCHHHHHH
Confidence 57899999999877 79999999999999999999999999999987557889999999999999999999999999999
Q ss_pred HHHHHHHHHHHh--c----CCCHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCC--cHHHHHHHHhhchhh
Q 003289 83 LQDSLNTLLKKF--H----KGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPE--FVPGFLELLTVLPEE 154 (833)
Q Consensus 83 lr~~Ll~~l~~~--~----~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~~~~--~~~~~L~iL~~l~Ee 154 (833)
+|..+..|+... . ++|.+++||++++++.++...||..|++ |+.++...+.-++. +.++++++|..|..|
T Consensus 82 vR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~Wns--fF~dlmsv~~~~s~~~~~dfflkvllaIdsE 159 (980)
T KOG2021|consen 82 VRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNS--FFDDLMSVFQVDSAISGLDFFLKVLLAIDSE 159 (980)
T ss_pred HHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHH--HHHHHHHHHhcccchhhHHHHHHHHHHhhhH
Confidence 999999999763 2 3589999999999999999999999999 99999888876554 489999999999999
Q ss_pred cccccccCChh---HHHHHHHHHH-HHHHHHHHHHHhhhhh------hHHHHHHHHHHHHHhhccCCCCccccccchhHH
Q 003289 155 VFNYKIAARPE---RRRQFEKELT-SQMEVALSTLTACLHI------NELKEQVLEAFASWLRLKHRIPGSVLASHPLVL 224 (833)
Q Consensus 155 ~~~~~~~~~~~---~r~~l~~~l~-~~~~~vl~~l~~~l~~------~~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~ 224 (833)
+.+.+...+++ +.+.+++.|+ +++|.+.+.-.+++.. +++...+|+|+.+|+.| +..+.+.+..+++
T Consensus 160 iad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSW---IdInLIaNd~f~n 236 (980)
T KOG2021|consen 160 IADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSW---IDINLIANDYFLN 236 (980)
T ss_pred hhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhh---hhhhhhhchhHHH
Confidence 99876544432 3345788885 5668877666555543 46778899998887777 5556788999999
Q ss_pred HHHhccCCcchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHH-hhhccCCHHHHHHHHHHHHHHhhHH
Q 003289 225 TALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAH-LTDSSKDEEDVKAIARLFADMGDSY 303 (833)
Q Consensus 225 ~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~-l~~~~~d~~~~~~l~~l~~~~~~~~ 303 (833)
++++.|+.++++.+|++|+.++++++|.+. +++++++.+... .++..- -....+|.++.+.++++++++|...
T Consensus 237 LLy~fl~ieelR~aac~cilaiVsKkMkP~-----dKL~lln~L~q~-l~lfg~~s~dq~~d~df~e~vskLitg~gvel 310 (980)
T KOG2021|consen 237 LLYKFLNIEELRIAACNCILAIVSKKMKPM-----DKLALLNMLNQT-LELFGYHSADQMDDLDFWESVSKLITGFGVEL 310 (980)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhcCCChh-----HHHHHHHHHHHH-HHHHhhhccccccCchHHHHHHHHHhhcceee
Confidence 999999999999999999999999999764 677777765321 111111 1133467789999999999999886
Q ss_pred HHHHHc----CCc--------hhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHhhcccccccCcccchHHHHHHHHH
Q 003289 304 VELIAT----GSD--------ESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQ 371 (833)
Q Consensus 304 ~~~l~~----~~~--------~~~~~l~~ll~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (833)
...+.+ .+. .....+.++++.+.|.+++++..+++||+++...+++.+ ++. +
T Consensus 311 ~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~---~ls-------------~ 374 (980)
T KOG2021|consen 311 TIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLK---ALS-------------S 374 (980)
T ss_pred ehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcc---ccc-------------c
Confidence 654432 111 244678899999999999999999999999998886532 111 1
Q ss_pred HhHHHHHHHHHHHHhhccCCCCCC---C-CChhhhHHhHhhhhcccccCCccchhhhhhhchhHHHHHHHhhcChhHHHH
Q 003289 372 VFRSAYESLVSLVSFRVQYPQDYQ---D-LSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLK 447 (833)
Q Consensus 372 ~~~~~~~~ll~~l~~k~~~p~d~~---~-~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~ 447 (833)
..+..+.+++.++++|+.|++.+. + -++||++.|.++|++ . ..+.+....+.|..++.
T Consensus 375 ~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~Rkk-----------------L-k~fqdti~~idpsl~l~ 436 (980)
T KOG2021|consen 375 PQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKK-----------------L-KNFQDTIVVIDPSLFLN 436 (980)
T ss_pred hhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHH-----------------H-HHHHHHHHhcCHHHHHH
Confidence 123456788889999999987542 1 123566778999999 5 46666667788887777
Q ss_pred HHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCccc----c------ccHHHHHhhcc--CCC--ChHHHHHHHH
Q 003289 448 ILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE----A------EVMPQVMALLP--KLP--QQPQLLQTVC 513 (833)
Q Consensus 448 ~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~~----~------~~l~~l~~~l~--~l~--~~~~v~~t~~ 513 (833)
.+.+.+...+..+ +..+|+.+|+|+|.++.+||+.+++. + .++..++..+. +++ +|+.|..-++
T Consensus 437 ~Ir~slS~al~ns--~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfm 514 (980)
T KOG2021|consen 437 NIRQSLSAALMNS--KEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFM 514 (980)
T ss_pred HHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHH
Confidence 7777777666543 26799999999999999999998652 1 23334444442 444 4899999999
Q ss_pred HHHHhchHHHhhCCCChhhHHHHHHHHH--hccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcC----
Q 003289 514 LTIGAYSKWFDAASSDPSILASVLSILT--SGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNG---- 586 (833)
Q Consensus 514 ~~ig~y~~~l~~~p~~~~~l~~~l~~l~--~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~---- 586 (833)
++|.||.+|+..+++ ++|.++.+++ +|+++.+ .|+.||+|.|.||++..++.+.|+++.+++.+++++..
T Consensus 515 E~ivRY~kff~~esq---~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt 591 (980)
T KOG2021|consen 515 ELIVRYNKFFSTESQ---KIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTT 591 (980)
T ss_pred HHHHHHHHHHhcchh---hhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCC
Confidence 999999999999987 9999999987 6787764 69999999999999999999999999999999999832
Q ss_pred ---cCCCCCCHhhHHHHHHHHHHHHhc--CChHHHHHHHHHhhhhhHHHHHHHHhcCC-CcccccC-----chhhhHHHH
Q 003289 587 ---EGSLKVSAEDSLHLVEALSMVITE--LPQVDAKKALEMLCLPVVTPLQEIINQGP-EILQKKH-----PRDLTVHID 655 (833)
Q Consensus 587 ---~~~~~l~~~~~~~l~eai~~vi~~--~~~~~~~~~l~~l~~p~~~~l~~~~~~~~-~~~~~~~-----~~~~~~~l~ 655 (833)
+.......+++.+++|++|.+|.. .|+|+...|+..++.|++.+......++. ++++..+ ..+...+++
T Consensus 592 ~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig 671 (980)
T KOG2021|consen 592 INAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIG 671 (980)
T ss_pred cCccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 111234578999999999999865 78888999999999999876554433221 1112111 112223444
Q ss_pred HHHHhhhccCC---cccHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcC
Q 003289 656 RFAYIFRYVNH---PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQ 732 (833)
Q Consensus 656 ~l~~~~~~~~~---~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 732 (833)
.+++.+..... ...+..++.++...+..++..++..+.++.++...++|++.++|+.+.|++|.+++.++.+....+
T Consensus 672 ~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d~kE 751 (980)
T KOG2021|consen 672 TLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTDLKE 751 (980)
T ss_pred HHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCCHHH
Confidence 44443332221 123456778888888888888888999999999999999999999999999999999999998889
Q ss_pred CccHhhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCc-------hHHHHHHHHHHHHhhCCCccCC
Q 003289 733 QPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPD-------VADDCFLLASRCIRYCPQLFIP 805 (833)
Q Consensus 733 ~~~~L~~~~~li~~fg~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~pd-------~~~~~f~l~~~~~~~~p~~~~~ 805 (833)
...||.+++++|++|+.+ +.+.+.+++.++..++|+.+... +...+|+ +.++|++|+.+++.+.-..++.
T Consensus 752 mvdfl~flsQLihkfk~~--~~~ilnqmlppll~rIfsvi~r~-a~p~dt~aa~ek~~lrksy~~fLqtftn~g~~sila 828 (980)
T KOG2021|consen 752 MVDFLGFLSQLIHKFKTD--CYQILNQMLPPLLNRIFSVIERI-AKPIDTAAAAEKILLRKSYCTFLQTFTNNGVTSILA 828 (980)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhccc-CCCCChhHHHHHHHHHHHHHHHHHHHhcCCcceeee
Confidence 999999999999999977 99999999999999999998752 2233333 6788999999999877666554
No 3
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-62 Score=510.04 Aligned_cols=548 Identities=36% Similarity=0.595 Sum_probs=478.2
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCHHHHH
Q 003289 24 MQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRT 103 (833)
Q Consensus 24 ~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~ 103 (833)
..|+.||.+||+|+++|.+|.++|+. ..+.+...|+|||+++||+++|+++|+.+...+|+++++++......+..+++
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~-~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~~~~~i~t 80 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQ-KCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELHDHPDVIRT 80 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHhCCchHHH
Confidence 46999999999999999999999987 47889999999999999999999999999999999999999998777779999
Q ss_pred HHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCcHHHHHHHHhhchhhcccccccCChhHHHHHHHHHHHHHHHHHH
Q 003289 104 QISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALS 183 (833)
Q Consensus 104 kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~~~~~~~~~L~iL~~l~Ee~~~~~~~~~~~~r~~l~~~l~~~~~~vl~ 183 (833)
||+.++|+++++++ +|.+ .+.++++..++.+....++|++|+++|||..+.+......||.++++.+..+.+.++.
T Consensus 81 QL~vavA~Lal~~~--~W~n--~I~e~v~~~~~~~~~~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~~~~L~ 156 (559)
T KOG2081|consen 81 QLAVAVAALALHMP--EWVN--PIFELVRALSNKHPAVPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQVSKVLV 156 (559)
T ss_pred HHHHHHHHHHHHhH--hhcc--hHHHHHHHhhcCCccHHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhHHHHHH
Confidence 99999999999997 7999 8999998887766568899999999999999988877889999999999999999999
Q ss_pred HHHhhhhhh-----HHHHHHHHHHHHHhhccCCCCccccccc-hhHHHHHhccCCcchHHHHHHHHHHHHhhhccCCCCC
Q 003289 184 TLTACLHIN-----ELKEQVLEAFASWLRLKHRIPGSVLASH-PLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGG 257 (833)
Q Consensus 184 ~l~~~l~~~-----~~~~~~l~~~~~Wi~~~~~i~~~~~~~~-~ll~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~ 257 (833)
++..+++.+ +...++++|+.||..++ .++.+.+.+. +++.++|..+++.++.+.|.+|++++++.....+.+.
T Consensus 157 ~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~-~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic~ll~~~~~~~~~~ 235 (559)
T KOG2081|consen 157 FLSDLLERSDLKSSDDLEQVLRCLGSWLRLH-VFPPDQVLASFPLITLAFRSLSDDELHEEATECICALLYCSLDRSEGL 235 (559)
T ss_pred HHHHHHhhcCCChhhHHHHHHHHHhhhhhhc-cCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHHHHHHHhhhhhccC
Confidence 999998864 46799999999999986 4777776555 9999999999999999999999999998765432111
Q ss_pred CCCchhHHHHHHHHHHhhHHH--hhhccCCHHHHHHHHHHHHHHhhHHHHHHHcCCchhHHHHHHHHhhhcCCCcchhhh
Q 003289 258 ATVNMPLIQVIVPQIMSLKAH--LTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASM 335 (833)
Q Consensus 258 ~~~~~~~i~~l~~~~~~l~~~--l~~~~~d~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~l~~ll~~~~~~~~~v~~~ 335 (833)
....+ ++..+..+... ...+.+|.+..+++||+|+++|+++...+..+|+.+...++.+|.+.+|++.++.+.
T Consensus 236 ---~~~~~--l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~ 310 (559)
T KOG2081|consen 236 ---PLAAI--LFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEA 310 (559)
T ss_pred ---chhHH--HhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhh
Confidence 12222 22222222222 345677888888999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcccccccCcccchHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhhccccc
Q 003289 336 TFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACC 415 (833)
Q Consensus 336 ~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~ 415 (833)
+|.||+.+.+.++...+ ......|+|++.++++.+.++++||++ .+...|+.++|.+||..
T Consensus 311 SF~fW~~lse~l~~~~~--------------~~~~~~frpy~~rLvs~l~~h~qlp~~-~~~l~Ee~~~f~~fR~~---- 371 (559)
T KOG2081|consen 311 SFNFWYSLSEELTLTDD--------------DEALGIFRPYFLRLVSLLKRHVQLPPD-QFDLPEEESEFFEFRLK---- 371 (559)
T ss_pred hHHhhhhhHHHHhcccc--------------HHHHHHhHHHHHHHHHHHHHHccCCCc-cccCccchhHHHHHHHH----
Confidence 99999999998876321 234568999999999999999999994 34445667889999999
Q ss_pred CCccchhhhhhhchhHHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCccccccHHHH
Q 003289 416 SSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQV 495 (833)
Q Consensus 416 ~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l 495 (833)
++|+++|+..++|.++++++++.++.+ +.++|+..||+||.+.+++..+++++++.+|++
T Consensus 372 -------------v~dvl~Dv~~iigs~e~lk~~~~~l~e-------~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pev 431 (559)
T KOG2081|consen 372 -------------VGDVLKDVAFIIGSDECLKQMYIRLKE-------NNASWEEVEAALFILRAVAKNVSPEENTIMPEV 431 (559)
T ss_pred -------------HHHHHHHHHHHhCcHHHHHHHHHHHcc-------CCCchHHHHHHHHHHHHHhccCCccccchHHHH
Confidence 999999999999999999999988875 267999999999999999999999999999999
Q ss_pred HhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhcCHHH
Q 003289 496 MALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDG 575 (833)
Q Consensus 496 ~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~~~l~~~l~~ 575 (833)
++.+.++|....+|+|++.++|+|++|+..||+ ++..+++++..++...+ .+++|+.++.++|..|+.++.++++.
T Consensus 432 l~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~---~le~v~~~~~~~~~~~~-~as~~a~~~~~i~~~c~~~~~~l~~~ 507 (559)
T KOG2081|consen 432 LKLICNLPEQAPLRYTSILLLGEYSEWVEQHPE---LLEPVLRYIRQGLQLKR-LASAAALAFHRICSACRVQMTCLIPS 507 (559)
T ss_pred HHHHhCCccchhHHHHHHHHHHHHHHHHHhCcH---HHHHHHHHHHHHhhhcc-hhHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 999999997666999999999999999999998 99999999999998888 99999999999999999999988888
Q ss_pred HHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHH
Q 003289 576 LYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTP 630 (833)
Q Consensus 576 ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~ 630 (833)
+...+..+... ..+.+... +.+|++.+++.+|.++.+..++.++.|.+..
T Consensus 508 ~~~l~~~l~~~----~~~~e~a~-l~~~~s~i~~~lp~~k~~~~~~el~~~~l~~ 557 (559)
T KOG2081|consen 508 LLELIRSLDST----QINEEAAC-LLQGISLIISNLPAHKAKIALEELCEPQLRN 557 (559)
T ss_pred HHHHHHHHHHH----hccHHHHH-HHHHHHHHHhcCCHhhhhHHHHHHhhHHHhc
Confidence 88777665543 24466666 9999999999999999999999999987643
No 4
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=100.00 E-value=5.6e-49 Score=408.34 Aligned_cols=794 Identities=15% Similarity=0.210 Sum_probs=549.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHH
Q 003289 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL 83 (833)
Q Consensus 4 ~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~~l 83 (833)
++-+.+.|.++|.+ +...++||++.|.+||..|+||+-+..+|+. |..++.+|.|.++|...|+++|.-+|++++.++
T Consensus 13 iallDkVVttfyqg-~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~-S~~pqskyiALs~LdklIttkWkllp~~~r~Gi 90 (1053)
T COG5101 13 IALLDKVVTTFYQG-DGRKQEQAQRILTKFQELPDAWTKADYILNN-SKLPQSKYIALSLLDKLITTKWKLLPEGMRQGI 90 (1053)
T ss_pred HHHHHHHHHHhcCC-CchhHHHHHHHHHHHHhCchHHHHHHHHHhc-ccCcchhhhHHHHHHHHHHhhhhhCCcHHHHHH
Confidence 45678889999865 6667899999999999999999999999986 788999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCcHHHHHHHHhhchhhccc
Q 003289 84 QDSLNTLLKKFHK------GPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFN 157 (833)
Q Consensus 84 r~~Ll~~l~~~~~------~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~~~~~~~~~L~iL~~l~Ee~~~ 157 (833)
|+++++.+..-++ ..+.+.+|+-.+|..++++.||..||+ |++++++..+.+.+.|+.-+.+|+.|.||+.+
T Consensus 91 Rnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~--FIpeli~~S~~s~~vCeNnmivLklLsEEvFd 168 (1053)
T COG5101 91 RNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPT--FIPELINVSQISMEVCENNMIVLKLLSEEVFD 168 (1053)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccch--hhHHHHhhccchHHHHhccHHHHHHhHHHHHh
Confidence 9999999887442 246899999999999999999999999 99999988776667888999999999999987
Q ss_pred ccc-cCChhHHHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHhhccCCCCccccccchhHHHHHhcc-CC
Q 003289 158 YKI-AARPERRRQFEKELTSQMEVALSTLTACLHI---NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSL-HS 232 (833)
Q Consensus 158 ~~~-~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~---~~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~~~~L-~~ 232 (833)
..- .++..+...+++.|...+|++++++.++++. +++..++|.++..++.| +|.+.+..+.++.++.+.+ +.
T Consensus 169 fSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~w---iPl~yIfeTnIieLv~~~f~s~ 245 (1053)
T COG5101 169 FSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEW---IPLDYIFETNIIELVLEHFNSM 245 (1053)
T ss_pred ccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh---CchhHHHHHHHHHHHHHHhccC
Confidence 542 2345566678899999999999999999876 35666665554443333 3445677788999888664 56
Q ss_pred cchHHHHHHHHHHHHhhhccCCCCC-CCCchh-HHHHHHHHHH--------hhHHHhhhccCC-HHHHHHHHHHHHHHhh
Q 003289 233 EILSEASVNVISELIHYSAAGSSGG-ATVNMP-LIQVIVPQIM--------SLKAHLTDSSKD-EEDVKAIARLFADMGD 301 (833)
Q Consensus 233 ~~~~~~a~~~l~~ii~~~~~~~~~~-~~~~~~-~i~~l~~~~~--------~l~~~l~~~~~d-~~~~~~l~~l~~~~~~ 301 (833)
|+++.++++||.++.+.++.+-.++ .++... .++.+....+ .++..+...+.+ ..+.+.++.+++++.+
T Consensus 246 pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~ 325 (1053)
T COG5101 246 PDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYE 325 (1053)
T ss_pred CchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHH
Confidence 8999999999999998876442111 111111 1122111111 122223333333 3688999999999999
Q ss_pred HHHHHHHcCC--chhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHhhccccc-----------ccCc-----ccchH
Q 003289 302 SYVELIATGS--DESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYI-----------SFGN-----EASAE 363 (833)
Q Consensus 302 ~~~~~l~~~~--~~~~~~l~~ll~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~-----------~~~~-----~~~~~ 363 (833)
.+..++.... +....-.++++++....+.++...++++|..+..+++..-+-. |-+. -|...
T Consensus 326 ~~~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s~~istnpn~~ 405 (1053)
T COG5101 326 VYISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTNPNQD 405 (1053)
T ss_pred HHHHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccchhccCCcchh
Confidence 9998885422 1234456888999999999999999999999988775321000 0000 11111
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhhcccccCCccchhhhhhhchhHHHHHHHhhcChh
Q 003289 364 AERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGD 443 (833)
Q Consensus 364 ~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~ 443 (833)
+.++-+...|.+++++|.-+++++|..|++.--...|+-+--++|-++ +++... -+.+.+++.++.+..- +
T Consensus 406 ~~~pLrkhiY~~ilsqLrlvlienMvrPEEVliVendegEivRefvke----tDtI~l----YksmRevLvyLthL~v-~ 476 (1053)
T COG5101 406 STKPLRKHIYIGILSQLRLVLIENMVRPEEVLIVENDEGEIVREFVKE----TDTIEL----YKSMREVLVYLTHLIV-D 476 (1053)
T ss_pred cccchHHHHHHHHHHHHHHHHHHcCCCcceEEEEECCCcHHHHHHhcc----ccHhHH----HHHHhhHHHHHhhhhh-h
Confidence 223345568999999999999999999986211111111111112111 000000 0015567777766655 4
Q ss_pred HHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCccc-cccHHHHHhhcc------CCCC-hHHHHHHHHHH
Q 003289 444 ATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE-AEVMPQVMALLP------KLPQ-QPQLLQTVCLT 515 (833)
Q Consensus 444 ~~l~~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~~-~~~l~~l~~~l~------~l~~-~~~v~~t~~~~ 515 (833)
.+-.++..++...+. ...++|..+...+||+|+|+..+.++. ..++.+++..+. +... ...|....+.+
T Consensus 477 Dte~~mi~Klarq~d---g~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyv 553 (1053)
T COG5101 477 DTEKYMIGKLARQLD---GKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYV 553 (1053)
T ss_pred hHHHHHHHHHHHHhc---CCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeee
Confidence 466667777665432 247899999999999999999998764 466777776543 2332 57889999999
Q ss_pred HHhchHHHhhCCCChhhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhh--------cCHHHHHHHHHHHhcC
Q 003289 516 IGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLC--------GYLDGLYNVYRTAVNG 586 (833)
Q Consensus 516 ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~-~~v~~~A~~al~~l~~~~~~~l~--------~~l~~ll~~l~~~l~~ 586 (833)
+|+|.+|+..|.. ++.+++..++..|+.. +.|+.+||..|.++++.|+.+.. |++..++..+.+.-
T Consensus 554 vGQYpRFLkahw~---FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT-- 628 (1053)
T COG5101 554 VGQYPRFLKAHWS---FLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTT-- 628 (1053)
T ss_pred eccchHHHHHHHH---HHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhc--
Confidence 9999999999987 9999999999999754 46999999999999999998775 45554544444332
Q ss_pred cCCCCCCHhhHHHHHHHHHHHHhcCChH-HHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhh--hHHHHHHHHhhhc
Q 003289 587 EGSLKVSAEDSLHLVEALSMVITELPQV-DAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDL--TVHIDRFAYIFRY 663 (833)
Q Consensus 587 ~~~~~l~~~~~~~l~eai~~vi~~~~~~-~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~--~~~l~~l~~~~~~ 663 (833)
..+.+......|||+|.+|+..|.. +.+..+..++.-....|.++..++..+.....-... +.+-.+.+.+..+
T Consensus 629 ---~dL~pqQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~qa~~n~~~L~d~~tvki~an~~ktnVa~c 705 (1053)
T COG5101 629 ---GDLEPQQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIVIQADENINRLSDTMTVKIDANKMKTNVAKC 705 (1053)
T ss_pred ---ccCChHHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHH
Confidence 1577888999999999999999976 444666677777777777776665432111000000 0111122222222
Q ss_pred cC-----CcccHHHHHHHHHHHHHHHH---Hhh-------cCCh------HHHHHHHHHHHHHHH---HhhhhhhhhHHH
Q 003289 664 VN-----HPEAVADAIQRLWPIFKAIF---DIR-------AWDM------RTMESLCRACKYAVR---TSKRFMGITIGA 719 (833)
Q Consensus 664 ~~-----~~~~~~~~~~~~~~~l~~il---~~~-------~~~~------~v~e~~~~~~~~~~~---~~~~~~~~~l~~ 719 (833)
.+ -|+.+..+..++.+...... ... ...+ .|...+...+..-+. .+.-....+++.
T Consensus 706 tslg~~fyPq~~~~y~~ml~ly~avs~~Is~~vaaeg~iatktp~vrglrtiKkEIlkLv~tyIska~dl~~V~n~lv~~ 785 (1053)
T COG5101 706 TSLGYRFYPQTCSSYCIMLFLYFAVSFDISNSVAAEGLIATKTPAVRGLRTIKKEILKLVATYISKARDLKFVQNDLVNM 785 (1053)
T ss_pred hhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccchHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 11 14444444443333222111 000 0111 111222222222111 111222467889
Q ss_pred HHHHHHHHHhhc-C---CccHhhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHH
Q 003289 720 ILEEIQGLYQQH-Q---QPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRC 795 (833)
Q Consensus 720 l~~~l~~~~~~~-~---~~~~L~~~~~li~~fg~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~ 795 (833)
+++.++.+|..+ | .+..|.+.+.++...|+- +.....-.+...+.++..++. .+++++|+...+||.++..+
T Consensus 786 l~eaVl~DY~nNvPdardaevLnl~ttiV~~v~~~--i~~~~~l~l~svf~ctl~mi~--kdf~EypEhr~~f~~Ll~~i 861 (1053)
T COG5101 786 LCEAVLFDYKNNVPDARDAEVLNLGTTIVRNVESV--IYLQRELFLISVFICTLIMIV--KDFDEYPEHRKNFLLLLENI 861 (1053)
T ss_pred HHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHhhhHHHHH--hhhhhChHHHHHHHHHHHHH
Confidence 999999999875 4 478999999999998854 444444455556667766665 46899999999999999999
Q ss_pred HhhCCCccCC--cCCcHHHHHHHHHcccccCchhh
Q 003289 796 IRYCPQLFIP--SSVFPSLVDCSMIGITVQHRRRI 828 (833)
Q Consensus 796 ~~~~p~~~~~--~~~l~~~~~~~~~~l~~~~~~~~ 828 (833)
..++...|++ .|.+..+.+..++++....|+.-
T Consensus 862 nl~sF~afl~~p~p~Fklv~nti~wsfkhi~RDv~ 896 (1053)
T COG5101 862 NLFSFSAFLSFPQPSFKLVYNTILWSFKHINRDVS 896 (1053)
T ss_pred HHHhHHHHHcCCcHHHHHHHHHHHHHHHhccchHh
Confidence 9888877764 67899999999999988777753
No 5
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-42 Score=360.32 Aligned_cols=700 Identities=15% Similarity=0.232 Sum_probs=501.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhcc-CCCchHHHHHHHHHHHHHhhcCCCCCChhhHHH
Q 003289 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG 82 (833)
Q Consensus 4 ~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~-~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~~ 82 (833)
.++|.+.++.- .++|++.|+.+...|++++..|+.-.+...+|.. .+.+..+|-.|..+|+|.++.+|..++++....
T Consensus 12 l~ql~~lLk~s-~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~y 90 (885)
T KOG2023|consen 12 LQQLAQLLKNS-QSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDY 90 (885)
T ss_pred HHHHHHHHHhc-cCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHH
Confidence 34555555554 3579999999999999999999988877777764 345678999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CcHHHHHHHHhhchhhcccc-cc
Q 003289 83 LQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVFNY-KI 160 (833)
Q Consensus 83 lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~~~-~~~~~~L~iL~~l~Ee~~~~-~~ 160 (833)
+|+.++.-+.. .++.||+-....+++|+...+-..||+ .++.+.+.+.+.. +.++..+.-|..++|+.... +.
T Consensus 91 iKs~~l~~lgd---~~~lIr~tvGivITTI~s~~~~~~wpe--lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds 165 (885)
T KOG2023|consen 91 IKSECLHGLGD---ASPLIRATVGIVITTIASTGGLQHWPE--LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDS 165 (885)
T ss_pred HHHHHHhhccC---chHHHHhhhhheeeeeecccccccchh--HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhh
Confidence 99999988876 456888888888888988877789999 9999999887633 57788999999999975431 00
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhccCCCCccccccchhHHHHHhccCCcchHHHHH
Q 003289 161 AARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASV 240 (833)
Q Consensus 161 ~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~~~~L~~~~~~~~a~ 240 (833)
.. ..+-|.-.+|..++++.+. ++.++..++.|+...|-.. + ..+.. .+
T Consensus 166 ~~-------~~rpl~~mipkfl~f~~h~--spkiRs~A~~cvNq~i~~~---~------qal~~--------------~i 213 (885)
T KOG2023|consen 166 DV-------LTRPLNIMIPKFLQFFKHP--SPKIRSHAVGCVNQFIIIQ---T------QALYV--------------HI 213 (885)
T ss_pred hc-------ccCchHHhHHHHHHHHhCC--ChhHHHHHHhhhhheeecC---c------HHHHH--------------HH
Confidence 00 1123455567777777765 4567888888887766531 0 00100 00
Q ss_pred HHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHHHHcCCchhHHHHHH
Q 003289 241 NVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHA 320 (833)
Q Consensus 241 ~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~l~~ 320 (833)
-+.++.+|. + ..++|++..+++|+.++-+.+..+..+. ++...++++
T Consensus 214 ---------------------D~Fle~lFa--------l-anD~~~eVRk~vC~alv~Llevr~dkl~---phl~~Ivey 260 (885)
T KOG2023|consen 214 ---------------------DKFLEILFA--------L-ANDEDPEVRKNVCRALVFLLEVRPDKLV---PHLDNIVEY 260 (885)
T ss_pred ---------------------HHHHHHHHH--------H-ccCCCHHHHHHHHHHHHHHHHhcHHhcc---cchHHHHHH
Confidence 011222221 1 2467788899999999998888887775 578899999
Q ss_pred HHhhhcCCCcchhhhhHHHHHHHHHHHhhcccccccCcccchHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCC---C-
Q 003289 321 LLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQ---D- 396 (833)
Q Consensus 321 ll~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~---~- 396 (833)
||..+..++++|+-.+.+||..+++.- -....+.|++.+++.+++.+|.|.++.. +
T Consensus 261 ML~~tqd~dE~VALEACEFwla~aeqp--------------------i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~ 320 (885)
T KOG2023|consen 261 MLQRTQDVDENVALEACEFWLALAEQP--------------------ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKN 320 (885)
T ss_pred HHHHccCcchhHHHHHHHHHHHHhcCc--------------------CcHHHHHHHHHHHHHHHHccCccccccHHHhcC
Confidence 999999999999999999999988631 1124788999999999999999976311 0
Q ss_pred CChh----hhH-----HhHhhhhcc----------------cccCCccchhhhhhhchhHHHHHHHhhcChhHHHHHHHH
Q 003289 397 LSLE----DLK-----EFKHTRYDL----------------ACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYI 451 (833)
Q Consensus 397 ~~~d----~~~-----~f~~~R~~~----------------~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~ 451 (833)
.++| |+| .|..-|..+ -.|+.+.|.+|++.+|..|++.++ .| ++++..+..
T Consensus 321 ~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanv---f~-~elL~~l~P 396 (885)
T KOG2023|consen 321 NEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANV---FG-DELLPILLP 396 (885)
T ss_pred ccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHh---hH-HHHHHHHHH
Confidence 0000 000 111111100 125667788888888888998764 46 779999999
Q ss_pred HHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhccC-CCC-hHHHHHHHHHHHHhchHHHhhCCCC
Q 003289 452 KFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-LPQ-QPQLLQTVCLTIGAYSKWFDAASSD 529 (833)
Q Consensus 452 ~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~~-l~~-~~~v~~t~~~~ig~y~~~l~~~p~~ 529 (833)
.+.+.+. +..|..+||++.++|+|||++....-+++|.++.++.+ +.+ .|.||..+||+++||++|+...+.
T Consensus 397 lLk~~L~-----~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~- 470 (885)
T KOG2023|consen 397 LLKEHLS-----SEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSR- 470 (885)
T ss_pred HHHHHcC-----cchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCCh-
Confidence 9988764 57899999999999999999988778889999988753 443 689999999999999999998763
Q ss_pred hhhHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHH
Q 003289 530 PSILASVLSILTSGM-STSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVI 608 (833)
Q Consensus 530 ~~~l~~~l~~l~~~l-~~~~~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi 608 (833)
.+++.+++.-+++.+ +..++|+.+||+||..+-++..++|+||+..|++.+-..++ ++...+-.-+|.|||+++
T Consensus 471 ~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~-----kYQ~KNLlILYDAIgtlA 545 (885)
T KOG2023|consen 471 DEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFG-----KYQKKNLLILYDAIGTLA 545 (885)
T ss_pred HhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH-----HHhhcceehHHHHHHHHH
Confidence 258888887666554 44456999999999999999999999999999999988876 356677889999999999
Q ss_pred hcCChH-HHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCC--cccHHHHHHHHHHHHHHHH
Q 003289 609 TELPQV-DAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH--PEAVADAIQRLWPIFKAIF 685 (833)
Q Consensus 609 ~~~~~~-~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~il 685 (833)
.++..+ ....|++-++.|++++|..+-.. + +++.-.++|++++...++. ..-+.++++.++.+++..+
T Consensus 546 dsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~-----D----KdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~ 616 (885)
T KOG2023|consen 546 DSVGHALNKPAYIQILMPPLIEKWELLSDS-----D----KDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTL 616 (885)
T ss_pred HHHHHhcCcHHHHHHhccHHHHHHHhcCcc-----c----chHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHH
Confidence 998765 44589999999999999765322 1 2455567777777665431 0112233444444444322
Q ss_pred Hhh-----------------------------------------------------cCChHHHHHHHHHHHHHHHHhhhh
Q 003289 686 DIR-----------------------------------------------------AWDMRTMESLCRACKYAVRTSKRF 712 (833)
Q Consensus 686 ~~~-----------------------------------------------------~~~~~v~e~~~~~~~~~~~~~~~~ 712 (833)
+.. ..-++|++.++.+++.+.+.+-++
T Consensus 617 q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~ 696 (885)
T KOG2023|consen 617 QLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEH 696 (885)
T ss_pred HHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHh
Confidence 111 123677777777888777766677
Q ss_pred hhhhHHHHHHHHHHHHhhcCCcc---HhhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHH
Q 003289 713 MGITIGAILEEIQGLYQQHQQPC---FLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCF 789 (833)
Q Consensus 713 ~~~~l~~l~~~l~~~~~~~~~~~---~L~~~~~li~~fg~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~pd~~~~~f 789 (833)
+.|++..++..+...+.....+. ..+.++.+..++|.+ +.+.+..++..++ .+++. ......+.++.-
T Consensus 697 v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~--~~~~v~~vl~~L~----~iin~---~~~~~tllENtA 767 (885)
T KOG2023|consen 697 VIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLK--MKQYVSPVLEDLI----TIINR---QNTPKTLLENTA 767 (885)
T ss_pred ccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchh--hhhHHHHHHHHHH----HHhcc---cCchHHHHHhhh
Confidence 77777777776665555444432 356677777788866 5666555555544 34442 233334566666
Q ss_pred HHHHHHHhhCCCccCCcCCcHHHHHHHHHccc----ccCchhhh
Q 003289 790 LLASRCIRYCPQLFIPSSVFPSLVDCSMIGIT----VQHRRRIL 829 (833)
Q Consensus 790 ~l~~~~~~~~p~~~~~~~~l~~~~~~~~~~l~----~~~~~~~~ 829 (833)
-.++|+...||..+.+ .++..++=....+. ..+++++.
T Consensus 768 ITIGrLg~~~Pe~vAp--~l~~f~~pWc~sl~~i~DneEK~sAF 809 (885)
T KOG2023|consen 768 ITIGRLGYICPEEVAP--HLDSFMRPWCTSLRNIDDNEEKESAF 809 (885)
T ss_pred hhhhhhhccCHHhcch--hHHHHHHHHHHHhcccccchhHHHHH
Confidence 6688888889988854 66766665555443 44455443
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-39 Score=365.87 Aligned_cols=600 Identities=18% Similarity=0.229 Sum_probs=440.3
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHH
Q 003289 3 LQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG 82 (833)
Q Consensus 3 ~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~~ 82 (833)
.++.+.+.++.|. ++|+++|++|++.|+..-+++..-.....+++. +.++++|.+||+.+|+.+.+.|+.++++.+..
T Consensus 2 ~~~~l~qLl~~l~-spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~-~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~s 79 (1075)
T KOG2171|consen 2 DSAPLEQLLQQLL-SPDNEVRRQAEEALETLAKTEPLLPALAHILAT-SADPQVRQLAAVLLRKLLTKHWSRLSAEVQQS 79 (1075)
T ss_pred chhHHHHHHHHhc-CCCchHHHHHHHHHHHhhcccchHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 4678899999995 678889999999999655555565566677765 78999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC-CCCcHHHHHHHHhhchhhccccccc
Q 003289 83 LQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS-HPEFVPGFLELLTVLPEEVFNYKIA 161 (833)
Q Consensus 83 lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~-~~~~~~~~L~iL~~l~Ee~~~~~~~ 161 (833)
||+.|+..+.+. ..+.||+|+|.++|.++....++.||+ +++.+++..++ ++...+..+.+|..+|+-+++..
T Consensus 80 iks~lL~~~~~E--~~~~vr~k~~dviAeia~~~l~e~WPe--ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~-- 153 (1075)
T KOG2171|consen 80 IKSSLLEIIQSE--TEPSVRHKLADVIAEIARNDLPEKWPE--LLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL-- 153 (1075)
T ss_pred HHHHHHHHHHhc--cchHHHHHHHHHHHHHHHhccccchHH--HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc--
Confidence 999999999984 557899999999999999888889999 99999998876 55678999999999999877532
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHHHhhccCCCCccccccchhHHHHHhccCCcchHHHH
Q 003289 162 ARPERRRQFEKELTSQMEVALSTLTACLHIN--ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEAS 239 (833)
Q Consensus 162 ~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~--~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~~~~L~~~~~~~~a 239 (833)
..+.+.+..++.++++++ .++..+++++.+.+.+. +.
T Consensus 154 -------------~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~---~~------------------------- 192 (1075)
T KOG2171|consen 154 -------------QPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYL---EN------------------------- 192 (1075)
T ss_pred -------------chhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHh---cc-------------------------
Confidence 335677888888888764 36677777777666541 00
Q ss_pred HHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHHHHcCCchhHHHHH
Q 003289 240 VNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVH 319 (833)
Q Consensus 240 ~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~l~ 319 (833)
+ ....+.+..++|.+++..+... .++|.+..+...+.+.++.+..++++. +.+..+++
T Consensus 193 -----------------~-~~~~~~~~~llP~~l~vl~~~i-~~~d~~~a~~~l~~l~El~e~~pk~l~---~~l~~ii~ 250 (1075)
T KOG2171|consen 193 -----------------N-KSEVDKFRDLLPSLLNVLQEVI-QDGDDDAAKSALEALIELLESEPKLLR---PHLSQIIQ 250 (1075)
T ss_pred -----------------c-hHHHHHHHHHhHHHHHHhHhhh-hccchHHHHHHHHHHHHHHhhchHHHH---HHHHHHHH
Confidence 0 0123455667787766444432 234555677888999999999888885 47889999
Q ss_pred HHHhhhcCC--CcchhhhhHHHHHHHHHHHhhcccccccCcccchHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCC
Q 003289 320 ALLEVASHP--EYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDL 397 (833)
Q Consensus 320 ~ll~~~~~~--~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~ 397 (833)
+.+++..+. ++.++..+++|...+.+.... ......++..+|+.+++..|.--+++++|
T Consensus 251 ~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~-------------------~~k~~~~~~~~lv~~~l~~mte~~~D~ew 311 (1075)
T KOG2171|consen 251 FSLEIAKNKELENSIRHLALEFLVSLSEYAPA-------------------MCKKLALLGHTLVPVLLAMMTEEEDDDEW 311 (1075)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHHHHhhHH-------------------HhhhchhhhccHHHHHHHhcCCcccchhh
Confidence 999998876 578999999998888775321 11233345566777666444332344567
Q ss_pred Chh-hh--HHhH-hhhhcccccCCccchhhhhhhchhHHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHH
Q 003289 398 SLE-DL--KEFK-HTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAA 473 (833)
Q Consensus 398 ~~d-~~--~~f~-~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Eaa 473 (833)
..+ +. |++. .+|. +...+..+...+|++.++..+++.+...+. +.+|..+.|+
T Consensus 312 ~~~d~~ded~~~~~~~~------------------A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~-----S~~w~~R~Aa 368 (1075)
T KOG2171|consen 312 SNEDDLDEDDEETPYRA------------------AEQALDRLALHLGGKQVLPPLFEALEAMLQ-----STEWKERHAA 368 (1075)
T ss_pred ccccccccccccCcHHH------------------HHHHHHHHHhcCChhhehHHHHHHHHHHhc-----CCCHHHHHHH
Confidence 442 22 1111 1221 234555566678988898989988887763 6789999999
Q ss_pred HHHHHHhhcccCccccccHHHHHhhcc-CCC-ChHHHHHHHHHHHHhchHHHhhCCCC--hhhHHHHHHHHHhccCCCHH
Q 003289 474 LFCIRAISTYVSVVEAEVMPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFDAASSD--PSILASVLSILTSGMSTSED 549 (833)
Q Consensus 474 l~~l~~i~e~~~~~~~~~l~~l~~~l~-~l~-~~~~v~~t~~~~ig~y~~~l~~~p~~--~~~l~~~l~~l~~~l~~~~~ 549 (833)
|.++++++|++.......++++++++. .+. +||+||.++|..||+++.-|..+-+. ++.+++.+-.....-.+++
T Consensus 369 L~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~r- 447 (1075)
T KOG2171|consen 369 LLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVR- 447 (1075)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchH-
Confidence 999999999998776778999999864 454 49999999999999999877643221 1244444444444444556
Q ss_pred HHHHHHHHHHHHHHHhhh-hhhcCHHHHHH-HHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhh
Q 003289 550 TAAAAALAFRHICDDCRK-KLCGYLDGLYN-VYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPV 627 (833)
Q Consensus 550 v~~~A~~al~~l~~~~~~-~l~~~l~~ll~-~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~ 627 (833)
|+.+|+.|+.+|.++|.+ .+.||++.+++ .+.-+.++ -+...++.++.+||+|+.+.. +...+|..++
T Consensus 448 V~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~-----~~~~v~e~vvtaIasvA~AA~-~~F~pY~d~~---- 517 (1075)
T KOG2171|consen 448 VQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQS-----SKPYVQEQAVTAIASVADAAQ-EKFIPYFDRL---- 517 (1075)
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcC-----CchhHHHHHHHHHHHHHHHHh-hhhHhHHHHH----
Confidence 999999999999999965 56799999999 44445443 246789999999999988752 3344665554
Q ss_pred HHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHH
Q 003289 628 VTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIR-AWDMRTMESLCRACKYAV 706 (833)
Q Consensus 628 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~-~~~~~v~e~~~~~~~~~~ 706 (833)
|..+.+++++.... +....| ...+++++.+.+.++ .+.+.+..++++.++......- ..|...++....++.++.
T Consensus 518 Mp~L~~~L~n~~~~-d~r~Lr--gktmEcisli~~AVG-ke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc 593 (1075)
T KOG2171|consen 518 MPLLKNFLQNADDK-DLRELR--GKTMECLSLIARAVG-KEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMC 593 (1075)
T ss_pred HHHHHHHHhCCCch-hhHHHH--hhHHHHHHHHHHHhh-hhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHH
Confidence 44456677766531 111122 346888888877763 4567777788888877765222 235566788888899999
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHhh
Q 003289 707 RTSKRFMGITIGAILEEIQGLYQQ 730 (833)
Q Consensus 707 ~~~~~~~~~~l~~l~~~l~~~~~~ 730 (833)
+.+|++|.||+|.++..+...-+.
T Consensus 594 ~ilg~~F~p~L~~Vmppl~~ta~~ 617 (1075)
T KOG2171|consen 594 RILGDDFAPFLPVVMPPLLKTARL 617 (1075)
T ss_pred HHhchhhHhHHHHHhHHHHHhhcc
Confidence 999999999999998877655443
No 7
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.3e-30 Score=283.53 Aligned_cols=722 Identities=14% Similarity=0.195 Sum_probs=456.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCCC---------CC
Q 003289 6 TVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEE---------LP 76 (833)
Q Consensus 6 ~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~---------l~ 76 (833)
.+.+++.+-. .+||..|+.|++.|++++|.|+....+++++.+.+.+..||.-||..|||+|.+.|+. ++
T Consensus 5 ~l~~~~~~T~-d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~ 83 (1010)
T KOG1991|consen 5 SLLQIFRATI-DSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIP 83 (1010)
T ss_pred HHHHHHHHhc-CCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCC
Confidence 3444444432 3569999999999999999999999999999876667789999999999999999974 57
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CcHHHHHHHHhhchhhc
Q 003289 77 SEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEV 155 (833)
Q Consensus 77 ~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~~~-~~~~~~L~iL~~l~Ee~ 155 (833)
+++|..+|+.++..+.+ +|..+|.++..++-.|+...+|++||+ +++.+-..+++.. ++....|.+|..|.-
T Consensus 84 e~dk~~irenIl~~iv~---~p~~iRvql~~~l~~Ii~~D~p~~Wp~--l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k-- 156 (1010)
T KOG1991|consen 84 EEDKAVIRENILETIVQ---VPELIRVQLTACLNTIIKADYPEQWPG--LLDKIKNLLQSQDANHVYGALLCLYQLFK-- 156 (1010)
T ss_pred hHHHHHHHHHHHHHHHh---CchHHHHHHHHHHHHHHhcCCcccchh--HHHHHHHHhcCcchhhHHHHHHHHHHHHH--
Confidence 88999999999999998 799999999999999999999999999 8998888887643 345566667766533
Q ss_pred ccccccCChhHHHHHHHHHHHHHHHHHHHHHhhhhhh-----HHHHHHHHHHHHHhhccCCCCccccccchhHHHHHhcc
Q 003289 156 FNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN-----ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSL 230 (833)
Q Consensus 156 ~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~-----~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~~~~L 230 (833)
..++. ..++|.-+...+...+|.++++..+.++.+ ++...+++.|.+.+.+ ++|.. |
T Consensus 157 -~ye~k-~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~--~LP~~--------------L 218 (1010)
T KOG1991|consen 157 -TYEWK-KDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYY--ELPLE--------------L 218 (1010)
T ss_pred -HHhhc-cccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHH--hCCHH--------------h
Confidence 22222 245677788888999999999999988764 5778999999999987 46654 3
Q ss_pred CCcchHHHHHHHHHHHHhhhccCC--CCCCCCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHH--
Q 003289 231 HSEILSEASVNVISELIHYSAAGS--SGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVEL-- 306 (833)
Q Consensus 231 ~~~~~~~~a~~~l~~ii~~~~~~~--~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~~~~~~~-- 306 (833)
.+++.+.++++.+..|+++.-+.. +.|++.+. -.||+-. .+ +.++.+.|+|..+|......
T Consensus 219 ~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~-----~~~wwK~--KK--------Wa~~~L~Rlf~Ryg~~~~~~~~ 283 (1010)
T KOG1991|consen 219 SAPETFTSWMELFLSILNRPVPVEVLSLDPEDRS-----SWPWWKC--KK--------WALHILNRLFERYGSPSLVVPE 283 (1010)
T ss_pred hCchhHHHHHHHHHHHHcCCCChhcccCChhhcc-----cccchhh--HH--------HHHHHHHHHHHHhCCccccchh
Confidence 467788889999999998765321 11222211 1122100 00 12233344444443321110
Q ss_pred -------HHcCCchhHHHHHHHHhhhcC------CCcchhhhhHHHHHHHHHHHhhcccccccCcccchHHHHHHHHHHh
Q 003289 307 -------IATGSDESMLIVHALLEVASH------PEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVF 373 (833)
Q Consensus 307 -------l~~~~~~~~~~l~~ll~~~~~------~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (833)
+.+ +-+..+++..++.+.. -.+.|-..++.|.. ..++ +..+|...
T Consensus 284 y~~Fa~~f~~--n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~---~~Vs-----------------~~~twkll 341 (1010)
T KOG1991|consen 284 YKEFAQMFLK--NFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLE---QCVS-----------------HASTWKLL 341 (1010)
T ss_pred hHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH---Hhcc-----------------HHHHHHHh
Confidence 000 1123344444444331 13445455555532 2221 23678899
Q ss_pred HHHHHHHHHHHH-hhccCCC-CCCCCChhhhHHhHhhhhcccccCCccchhhhhhhchhHHHHHHHhhcChh---HHHHH
Q 003289 374 RSAYESLVSLVS-FRVQYPQ-DYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGD---ATLKI 448 (833)
Q Consensus 374 ~~~~~~ll~~l~-~k~~~p~-d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~---~~l~~ 448 (833)
+|+++-++.-++ .-|.|-+ |.+.|++|. .+|.+--.|+-++..+. ..|..+++..++...|++ .++.+
T Consensus 342 ~PHl~~ii~~vIFPlmc~~d~deelwe~DP-~EYiR~~~Di~ed~~sp------~~Aa~~~l~~~~~KR~ke~l~k~l~F 414 (1010)
T KOG1991|consen 342 KPHLQVIIQDVIFPLMCFNDEDEELWEEDP-YEYIRKKFDIFEDGYSP------DTAALDFLTTLVSKRGKETLPKILSF 414 (1010)
T ss_pred hhHHHHHHHHhhhhhcCCCcccHHHHhcCH-HHHHHhcCchhcccCCC------cHHHHHHHHHHHHhcchhhhhhHHHH
Confidence 999988876443 4444432 344566554 33333334444455543 224678888888888753 35566
Q ss_pred HHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcccc--ccHHHHH-hh-ccCCCC-hHHHHHHHHHHHHhchHHH
Q 003289 449 LYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEA--EVMPQVM-AL-LPKLPQ-QPQLLQTVCLTIGAYSKWF 523 (833)
Q Consensus 449 l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~~~--~~l~~l~-~~-l~~l~~-~~~v~~t~~~~ig~y~~~l 523 (833)
+.++++.....+. +..+-+..|+|++.++++++.+..... ..+..++ ++ +|.+.+ -..+|..+|+++++|++-=
T Consensus 415 ~~~Il~~~~~~~~-~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~d 493 (1010)
T KOG1991|consen 415 IVDILTRYKEASP-PNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSID 493 (1010)
T ss_pred HHHHHHhhcccCC-CccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhcc
Confidence 6666665432222 256789999999999999987765431 2333333 22 244432 5799999999999999644
Q ss_pred hhCCCChhhHHHHHHHHHhccCC-CH-HHHHHHHHHHHHHHHHhhh---hhhcCHHHHHHHHHHHhcCcCCCCCCHhhHH
Q 003289 524 DAASSDPSILASVLSILTSGMST-SE-DTAAAAALAFRHICDDCRK---KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSL 598 (833)
Q Consensus 524 ~~~p~~~~~l~~~l~~l~~~l~~-~~-~v~~~A~~al~~l~~~~~~---~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~ 598 (833)
-++|. .+..++....++|.+ ++ +|+..|+.|++.|...|.. .+.|+++++++.+.++.+. ...++-.
T Consensus 494 f~d~~---~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne-----~End~Lt 565 (1010)
T KOG1991|consen 494 FKDPN---NLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE-----VENDDLT 565 (1010)
T ss_pred CCChH---HHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh-----cchhHHH
Confidence 44554 789999999999874 33 6999999999999998874 4889999999999998763 5567777
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCch--hhhHHHHHHHHhhhccCC-cccHHHHHH
Q 003289 599 HLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPR--DLTVHIDRFAYIFRYVNH-PEAVADAIQ 675 (833)
Q Consensus 599 ~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~--~~~~~l~~l~~~~~~~~~-~~~~~~~~~ 675 (833)
.+|+.+ +...+ ++..++...+++.+.+...++++......+....+ .....|+.++++..++.. |+.....-.
T Consensus 566 ~vme~i---V~~fs-eElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~ 641 (1010)
T KOG1991|consen 566 NVMEKI---VCKFS-EELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEP 641 (1010)
T ss_pred HHHHHH---HHHHH-HhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 777776 45553 56678888899999999889888622111111111 224566777777776642 333333444
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCC---ccHhhhHHHHHHHhcCCcc
Q 003289 676 RLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQ---PCFLYLSSEVIKIFGSDPS 752 (833)
Q Consensus 676 ~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~---~~~L~~~~~li~~fg~~~~ 752 (833)
.+.|++..++++.. .++.|.++.+.... +.+.+.+.|.+=.+++.+...|..... +.++.++...|. +|..+-
T Consensus 642 ~~l~vi~~iL~~~i--~dfyeE~~ei~~~~-t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt-~g~~~~ 717 (1010)
T KOG1991|consen 642 IVLPVIGFILKNDI--TDFYEELLEIVSSL-TFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVT-YGTPSL 717 (1010)
T ss_pred HHHHHHHHHHHHhh--HHHHHHHHHHHhhh-hhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhee-eCchhh
Confidence 66677777766532 36777777766542 222333333333344444455555432 233344444443 333211
Q ss_pred -hhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCccCCcCCcHHHHHHHHHcccc
Q 003289 753 -CASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITV 822 (833)
Q Consensus 753 -~~~~~~~~~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~~~~~l~~ 822 (833)
-.+...+++..++..+ +.+ .-.+++|.. ..+.++.-++-.|-+.+ ...++.++..++..++.
T Consensus 718 ~s~~~y~~il~~i~~~~---l~~--e~~~D~d~~-~a~kLle~iiL~~kg~~--dq~iplf~~~a~~~l~~ 780 (1010)
T KOG1991|consen 718 LSNPDYLQILLEIIKKV---LTS--ENGEDSDCE-SACKLLEVIILNCKGLL--DQYIPLFLELALSRLTR 780 (1010)
T ss_pred hccchHHHHHHHHHHHH---HcC--CCCchHHHH-HHHHHHHHHHHHhcCcH--hhHhHHHHHHHHHHHhc
Confidence 1112222222233322 332 124455533 34577777777676622 33555666666666654
No 8
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-29 Score=288.25 Aligned_cols=789 Identities=13% Similarity=0.166 Sum_probs=499.5
Q ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHH
Q 003289 4 QNTVKEALNALYHH-PDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG 82 (833)
Q Consensus 4 ~~~v~~al~~ly~~-~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~~ 82 (833)
-.++.+|+...+++ ++.+.|.+|+++|.++|..|++|..|..+|.. ++++++||||.+.|.+.|+++|+.+|.+++.+
T Consensus 9 ~~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~-s~~~~~k~f~Lqlle~vik~~W~~~~~~~r~g 87 (1041)
T KOG2020|consen 9 DSELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKL-STNPILKYFALQLLENVIKFRWNSLPVEERVG 87 (1041)
T ss_pred HHHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhc-cCCchhheeeHHHHHHHHHHhcccCCccccHH
Confidence 45677777776666 88999999999999999999999999999987 57889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCcHHHHHHHHhhchhhcc
Q 003289 83 LQDSLNTLLKKFHK------GPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVF 156 (833)
Q Consensus 83 lr~~Ll~~l~~~~~------~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~~~~~~~~~L~iL~~l~Ee~~ 156 (833)
+|++++..+..... ..+.+++||+..+..++++.||+.||+ +++++.+....++..++..+.+++.|.||+.
T Consensus 88 lk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~--~i~dl~~~s~~s~~~~el~m~Il~lLsEdvf 165 (1041)
T KOG2020|consen 88 LKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPT--FIPDLAQSSKTSETVCELSMIILLLLSEEVF 165 (1041)
T ss_pred HHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcch--hhhhHHHHhhcCcccchHHHHHHHHHHHHHh
Confidence 99999999876432 246899999999999999999999999 9999999988888889999999999999999
Q ss_pred cccccCChhHHHH-HHHHHHHHHHHHHHHHHhhhhhh--HHHH---HHHHHHHHHhhccCCCCccccccchhHHH-HHhc
Q 003289 157 NYKIAARPERRRQ-FEKELTSQMEVALSTLTACLHIN--ELKE---QVLEAFASWLRLKHRIPGSVLASHPLVLT-ALSS 229 (833)
Q Consensus 157 ~~~~~~~~~~r~~-l~~~l~~~~~~vl~~l~~~l~~~--~~~~---~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~-~~~~ 229 (833)
.........+|.. ++..+...+..+..++....... ++.. .++.+|.+||++++ +.....+.. +...
T Consensus 166 ~~ss~~~~q~~~~il~~~~~~~f~~i~~l~~~~~~~a~~~~~~atl~tl~~fl~wip~~~------I~~tn~l~~~l~~~ 239 (1041)
T KOG2020|consen 166 DFSSSELTQQKIIILKNLLENEFQQIFTLCSYIKEKANSELLSATLETLLRFLEWIPLGY------IFETNILELLLNKF 239 (1041)
T ss_pred cccchHHHhhhHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcccHHH------HHHhhhHHHHHHhc
Confidence 7654322344444 34445556666777766655432 2333 44566667777653 333333444 4456
Q ss_pred cCCcchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHH------HHhhHHHhhhc-cCCH-HHHHHHHHHHHHHhh
Q 003289 230 LHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQ------IMSLKAHLTDS-SKDE-EDVKAIARLFADMGD 301 (833)
Q Consensus 230 L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~------~~~l~~~l~~~-~~d~-~~~~~l~~l~~~~~~ 301 (833)
++.++++..|++||.++++...... .....++++..+.. ...+.+.+..+ ..|. .+.+.++.++..+++
T Consensus 240 ln~~~~r~~al~CL~ei~s~~~~~~---~~~~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~dq~~fi~~l~~~l~~f~~ 316 (1041)
T KOG2020|consen 240 LNAPELRNNALSCLTELLSRKRSIY---ERKTVPMFNLTIYQLRSIPQDLDIPEVYSSLSDEDQDSFIEKLAQFLSLFFE 316 (1041)
T ss_pred cchHHHHHHHHHHHHHHHhccccch---hHHhHHHHHHHHHHHHHhhhhhchhhhhhcccHhHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999998765310 00112233222111 11122222222 2344 678999999999999
Q ss_pred HHHHHHHcCCch----hHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHhhc-ccccccCc-ccch-H-HHHHHHHHHh
Q 003289 302 SYVELIATGSDE----SMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKR-DSYISFGN-EASA-E-AERSRRLQVF 373 (833)
Q Consensus 302 ~~~~~l~~~~~~----~~~~l~~ll~~~~~~~~~v~~~~l~fw~~l~~~~~~~-~~~~~~~~-~~~~-~-~~~~~~~~~~ 373 (833)
.+..++.....+ ...+...++..+-+|..-. ..+++.|..+..+.+.. +.+..... -|.. + ..-+-+...|
T Consensus 317 ~~~~lle~~~~~~~~~~~~~~~li~i~~~~~se~~-~~~ld~W~~lv~~l~~~~~~ll~~s~~~~~~~~~~ri~~rk~~y 395 (1041)
T KOG2020|consen 317 QHIALLESSLSQRPVLLEALLELILISTIEPSEIF-KICLDYWNKLVADLYYNKPPLLQLSTTLPSISDYSRIDFRKSIY 395 (1041)
T ss_pred HHHHHHcCchhhhhHHHHHHHHHHHHhccCchhHH-HHHHHHHHHHHHhhhcccccccccccccccccchhccchHHHHH
Confidence 999998762222 2233333333333444444 44999999999886643 11211000 0000 0 0001225678
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhhcccccCCccchhhhhhhchhHHHHHHHhhcChhHHHHHHHHHH
Q 003289 374 RSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKF 453 (833)
Q Consensus 374 ~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l 453 (833)
.+++.++....+.+|.-|++.--.+.+..+.+++++.+ ..... +-..+.+.+......-+ ...-..+..++
T Consensus 396 ~~~~~~~r~l~l~~m~~Pe~vlive~~~~~~vre~~~~----~~~~~----ly~~~~e~l~~~~~L~~-~~t~~~~~~kl 466 (1041)
T KOG2020|consen 396 QEFLSKLRLLRLERMAKPEEVLIVENEQGEIVREFMKD----HDFIT----LYPVLRETLVYLLHLDV-VDTEKIMTEKL 466 (1041)
T ss_pred HHHHHHHHHHHHHHhcCchheeEEechHHHHHHHhccC----cchhh----hhHHHHHHHHHHHHhhh-hhhhhhhhHhH
Confidence 89999999999999999986433333444555555543 11111 11113444444333322 22333333444
Q ss_pred HHhHhhcCCCCCCcchhhHHHHHHHHhhcccCccc-cccHHHHHhhc----c--CCC-ChHHHHHHHHHHHHhchHHHhh
Q 003289 454 VEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE-AEVMPQVMALL----P--KLP-QQPQLLQTVCLTIGAYSKWFDA 525 (833)
Q Consensus 454 ~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~~-~~~l~~l~~~l----~--~l~-~~~~v~~t~~~~ig~y~~~l~~ 525 (833)
...+. ....+|..+.--||++++++..+.+.. ..++..++.-+ . .-+ ....+....+.++|.|..|+..
T Consensus 467 ~~~l~---~~~~~~~~ln~l~~ai~sisg~~~e~~e~k~~~~v~~d~l~l~E~~~~kdn~avi~~Ni~~vv~q~p~Fl~~ 543 (1041)
T KOG2020|consen 467 AIQLD---GDEWSLHNLNRLCWAIGSISGRMLEDMEKKFFVAVIRDLLNLCERKRGKDNKAVIASNIMYVVGQYPRFLKA 543 (1041)
T ss_pred HHHhh---HHHHhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHhcccchHHHH
Confidence 33322 125689999999999998888665542 23333322221 1 112 2356888899999999999999
Q ss_pred CCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhh--------cCHHHHHHHHHHHhcCcCCCCCCHhh
Q 003289 526 ASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLC--------GYLDGLYNVYRTAVNGEGSLKVSAED 596 (833)
Q Consensus 526 ~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~--------~~l~~ll~~l~~~l~~~~~~~l~~~~ 596 (833)
|.. +++++..-+++.++... .++.+||..|.+++..|+.+.. |+.+.++.-+..... .+.+.+
T Consensus 544 h~~---~Lkt~~~~L~efmhe~h~gvqdmacd~F~~ii~~~~~~fv~~~~~e~~~fv~~~~~~l~~i~~-----~l~~~q 615 (1041)
T KOG2020|consen 544 HWK---FLKTVVHKLFEFMHETHEGVQDMACDTFIKIIQKCKRHFVITQLGETKPFVGELLLNLTAITE-----DLQPQQ 615 (1041)
T ss_pred HHH---HHHHHHHHHHHHHhhhhHHHHhhhHHHHHHHHHhhhhhheeecccccccchHHHhhcccchhc-----CchHHH
Confidence 954 88888888888887543 4899999999999999987522 566666666655544 366789
Q ss_pred HHHHHHHHHHHHhc-CChHHHHHHHHHhhhhhHHHHHHHHhcCCCccccc----CchhhhHHHHHHHHhhhccCCc----
Q 003289 597 SLHLVEALSMVITE-LPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKK----HPRDLTVHIDRFAYIFRYVNHP---- 667 (833)
Q Consensus 597 ~~~l~eai~~vi~~-~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~~~~~~~---- 667 (833)
+...++++|.++.+ .+++....+.+.++.-.-..+.+++.++..+.+.. ..+.+...+...+......+.+
T Consensus 616 ~~~~~~al~~~V~~~~~~~~~~~~~~~~~vl~~~~~~nii~~~~~~~~~l~~~~~v~s~~~i~~~~~~~~~sl~~~f~~~ 695 (1041)
T KOG2020|consen 616 RHTFYEALGLMVSAEIDPAKAERLQSKLMVLPNRAWINIILQARCNDEILKLLETVKSLLNILKTNSRALTSLGSTFVPQ 695 (1041)
T ss_pred HHHHHHHHHHHHHHhCCHhhHHHHHhcccccchhhhcchhhcCcccHHhhcchHHHHHHHHHHHhHHHHHHhcCcccccc
Confidence 99999999965555 55556667777777666667777666554432211 1112222233333333333321
Q ss_pred -----ccHHHHHHHHHHHHHHHHHhhcC----ChHH------HHHHHHHHHHHHH---HhhhhhhhhHHHHHHHHHHHHh
Q 003289 668 -----EAVADAIQRLWPIFKAIFDIRAW----DMRT------MESLCRACKYAVR---TSKRFMGITIGAILEEIQGLYQ 729 (833)
Q Consensus 668 -----~~~~~~~~~~~~~l~~il~~~~~----~~~v------~e~~~~~~~~~~~---~~~~~~~~~l~~l~~~l~~~~~ 729 (833)
.....++....+.+....+.-.. .+.+ ...+|..+..... ....+...++|.++...+-.|.
T Consensus 696 ~~~~~~d~~~l~~~~s~~v~~~~~~~~~~~t~~~~v~~~~svk~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~ 775 (1041)
T KOG2020|consen 696 LGKIYLDMLQLYIKQSELVSINVTAGGSEKTKTPFVKTLRSVKREILKLLETFISKSEQRDLYLLMLVPPLLDAVLFDYL 775 (1041)
T ss_pred cccccHHHHHHHHHhcccccHHHhcccccccccHHHHHHHHHHHHHHHHHHhccCcccchhHHHHhhhhHHHHHHHHHHH
Confidence 11222222222222221111111 1111 1112211111000 0011234556777776666665
Q ss_pred h----cCCccHhhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCccCC
Q 003289 730 Q----HQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIP 805 (833)
Q Consensus 730 ~----~~~~~~L~~~~~li~~fg~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~~~~~p~~~~~ 805 (833)
. .+.+..+.+-..++...|+- +...+..++.+++.+.+.+++ .+..+.||....||.++..+...++..+..
T Consensus 776 ~nvPd~r~~~vl~l~~~iv~~Lg~~--i~~~~~~i~~~v~~c~l~m~~--~d~qe~~e~~~~f~~lle~l~~~~~~~~~~ 851 (1041)
T KOG2020|consen 776 DNVPDYRENEVLSLNATIVPKLGEF--IPAELPLINIAVLECTLEMIN--KDFQEYPEHRLNFLLLLEALLLFCFPAFSE 851 (1041)
T ss_pred ccCcchhcchHHHhhhhhhhhhhhH--hhhhccHHHHHHHhhhhhccc--cccccchHHHHHHHHHHHHHHHhhhHHHHc
Confidence 3 23456677777777777764 444444556666667766555 567899999999999999998888766663
Q ss_pred --cCCcHHHHHHHHHcccccCchhhh
Q 003289 806 --SSVFPSLVDCSMIGITVQHRRRIL 829 (833)
Q Consensus 806 --~~~l~~~~~~~~~~l~~~~~~~~~ 829 (833)
++.+..+++.++++....-|+..-
T Consensus 852 l~~~~~~~~~~si~~~f~h~~r~i~~ 877 (1041)
T KOG2020|consen 852 LPADQVKLVSDSIVWAFHHTMRNIAE 877 (1041)
T ss_pred CCchhhHHHHHHHHHHHHhhhhhhhh
Confidence 556778899999999855565543
No 9
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-28 Score=266.37 Aligned_cols=683 Identities=15% Similarity=0.166 Sum_probs=418.5
Q ss_pred CchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCC-------
Q 003289 1 MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVE------- 73 (833)
Q Consensus 1 ~~~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~------- 73 (833)
|+-++.+.+.++.=. .+||+.|+-|++.|++.+.+++--...+.|+.++..++++|.-||..+|+.|+++|.
T Consensus 1 ~~~le~l~~~l~qTl-~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~ 79 (960)
T KOG1992|consen 1 DANLETLANYLLQTL-SPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPI 79 (960)
T ss_pred CccHHHHHHHHHhcC-CCCCccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCcc
Confidence 455667776665542 468999999999999999887655566788877666889999999999999999995
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CcHHHHHHHHhhch
Q 003289 74 ELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLP 152 (833)
Q Consensus 74 ~l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~~~-~~~~~~L~iL~~l~ 152 (833)
.+.+++++.+|..++.++.+ .|..+..+|..++..++.++.|+.||+ ++++++..++++. .....+|..-.++
T Consensus 80 ~i~~~~~e~ikslIv~lMl~---s~~~iQ~qlseal~~Ig~~DFP~kWpt--Ll~dL~~~ls~~D~~~~~gVL~tahsi- 153 (960)
T KOG1992|consen 80 KIIEEDREQIKSLIVTLMLS---SPFNIQKQLSEALSLIGKRDFPDKWPT--LLPDLVARLSSGDFNVINGVLVTAHSI- 153 (960)
T ss_pred ccchhHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHhccccchhhHH--HHHHHHhhccccchHHHHHHHHHHHHH-
Confidence 46678899999999999987 678899999999999999999999999 9999999997643 3344555544443
Q ss_pred hhcccccccCChhHHHHHHHHHHHHH----HHHHHHHHhhhhhhHHHHHHHHHHHHHhhccCCCCccccccchhHHHHHh
Q 003289 153 EEVFNYKIAARPERRRQFEKELTSQM----EVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALS 228 (833)
Q Consensus 153 Ee~~~~~~~~~~~~r~~l~~~l~~~~----~~vl~~l~~~l~~~~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~~~ 228 (833)
+..+|.-. |-.++-.+++.+. ....+++.+..+-.+....--..+..|.+. --++..+|.
T Consensus 154 --Fkr~R~ef---rSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~v-----------lll~~klfy 217 (960)
T KOG1992|consen 154 --FKRYRPEF---RSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGV-----------LLLICKLFY 217 (960)
T ss_pred --HHhcCccc---ccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHH-----------HHHHHHHHH
Confidence 22223211 1112222222222 222233333221100000001133334431 123444555
Q ss_pred ccCC---cchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhccCCH-----HHHHHHHHHHHHHh
Q 003289 229 SLHS---EILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDE-----EDVKAIARLFADMG 300 (833)
Q Consensus 229 ~L~~---~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~d~-----~~~~~l~~l~~~~~ 300 (833)
.|+. ||.++ +|++-+...|...+.......++++++ +.-..+|+++.-+.
T Consensus 218 sLn~QDiPEFFE----------------------dnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~ 275 (960)
T KOG1992|consen 218 SLNFQDIPEFFE----------------------DNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYA 275 (960)
T ss_pred hhhcccchHHHH----------------------hhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHH
Confidence 5543 23333 222222222222111111111111111 12235566665555
Q ss_pred hHHHHHHHcCCchhHHHH-HHHHhhhcCC-CcchhhhhHHHHHHHHHHHhhcccccccCcccchHHHHHHHHHHhHHHH-
Q 003289 301 DSYVELIATGSDESMLIV-HALLEVASHP-EYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAY- 377 (833)
Q Consensus 301 ~~~~~~l~~~~~~~~~~l-~~ll~~~~~~-~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 377 (833)
+.|-.-+..--+++...+ .++-..+.++ .|.....++.|...+.+. ..| ..+|
T Consensus 276 ~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r----~~y--------------------~~~F~ 331 (960)
T KOG1992|consen 276 TKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRR----PHY--------------------AELFE 331 (960)
T ss_pred HhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhh----hhh--------------------Hhhhc
Confidence 554433321002233333 3333334455 355677889997665432 112 2222
Q ss_pred -HHHHHHHHhhccCCCCCCCCChhhhHHh----Hhh-hhcccc-cCCccchhhhhhhchhHHHHHHHhhcChhHHHHHHH
Q 003289 378 -ESLVSLVSFRVQYPQDYQDLSLEDLKEF----KHT-RYDLAC-CSSSTLTESVMLIAVADVLIDAASVLGGDATLKILY 450 (833)
Q Consensus 378 -~~ll~~l~~k~~~p~d~~~~~~d~~~~f----~~~-R~~~~~-~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~ 450 (833)
.+++..+++++..|.-.- ..+|+|-| .+| |+|++| |.++ |||++.|+++.++.... .++...+.
T Consensus 332 ~~~vl~~i~e~VvlpN~~l--R~eDeElFED~pleYiRRDlEGsDvdT------RRR~a~dlvrgL~~~fe-~~vt~v~~ 402 (960)
T KOG1992|consen 332 GENVLAQICEKVVLPNLIL--REEDEELFEDNPLEYIRRDLEGSDVDT------RRRAAIDLVRGLCKNFE-GQVTGVFS 402 (960)
T ss_pred chHHHHHHHHhhccccccc--chhhHHHhccCHHHHHHHhcccCCcch------hHHHHHHHHHHHHHHhc-chhHHHHH
Confidence 456777778888886211 11122222 344 999998 6666 78999999999998876 55666666
Q ss_pred HHHHHhHhh-cCCCCCCcchhhHHHHHHHHhhcccCccc------ccc--HHH-----HHhhccC--CCChHHHHHHHHH
Q 003289 451 IKFVEGVAC-CGNKHNEWRPAEAALFCIRAISTYVSVVE------AEV--MPQ-----VMALLPK--LPQQPQLLQTVCL 514 (833)
Q Consensus 451 ~~l~~~~~~-~~~~~~~w~~~Eaal~~l~~i~e~~~~~~------~~~--l~~-----l~~~l~~--l~~~~~v~~t~~~ 514 (833)
..++..+.+ +.+++.+|...+.++|.+.+++-...... ++. +.. ++..|.+ .-+||.++..++.
T Consensus 403 ~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIK 482 (960)
T KOG1992|consen 403 SEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIK 482 (960)
T ss_pred HHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccc
Confidence 555554432 34568899999999999999987654321 111 222 2222322 2248999999998
Q ss_pred HHHhchHHHhhCCCChhhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhh---------hhhhcCHHHHHHHHHHHh
Q 003289 515 TIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCR---------KKLCGYLDGLYNVYRTAV 584 (833)
Q Consensus 515 ~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~-~~v~~~A~~al~~l~~~~~---------~~l~~~l~~ll~~l~~~l 584 (833)
.+..|...+.. +++-..++.+.+.+..+ ..|...||+++.++-.-+. ..+.||+..+++.+.+.+
T Consensus 483 y~~~FR~ql~~-----~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~ 557 (960)
T KOG1992|consen 483 YIYTFRNQLGK-----EHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKAL 557 (960)
T ss_pred eeeeecccCCh-----HHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhc
Confidence 88877654442 37777788887777653 3599999999999864332 356688888888888777
Q ss_pred cCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhcc
Q 003289 585 NGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYV 664 (833)
Q Consensus 585 ~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 664 (833)
+.++ ..+.+++|++|.++++..++. ..+ ...+++.++.+++.+..+++.+....|+ .++.++.+++..
T Consensus 558 s~p~-----~~EneylmKaImRii~i~~~~-i~p----~~~~~l~~Lteiv~~v~KNPs~P~fnHY--LFEsi~~li~~t 625 (960)
T KOG1992|consen 558 SLPG-----KAENEYLMKAIMRIISILQSA-IIP----HAPELLRQLTEIVEEVSKNPSNPQFNHY--LFESIGLLIRKT 625 (960)
T ss_pred cCCc-----ccccHHHHHHHHHHHHhCHHh-hhh----hhhHHHHHHHHHHHHHhcCCCCchhHHH--HHHHHHHHHHHH
Confidence 6542 246799999999999987532 223 3444455555555554444444456666 789999888875
Q ss_pred C--CcccHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCCccHhhhHHH
Q 003289 665 N--HPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSE 742 (833)
Q Consensus 665 ~--~~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~L~~~~~ 742 (833)
. +|..+..+...++|+++.++.. +|.| +-||+..++..++
T Consensus 626 ~~~~~~~vs~~e~aL~p~fq~Il~e-----DI~E------------fiPYvfQlla~lv--------------------- 667 (960)
T KOG1992|consen 626 CKANPSAVSSLEEALFPVFQTILSE-----DIQE------------FIPYVFQLLAVLV--------------------- 667 (960)
T ss_pred hccCchHHHHHHHHHHHHHHHHHHH-----HHHH------------HHHHHHHHHHHHH---------------------
Confidence 4 3555667778999999988763 4444 2344444333333
Q ss_pred HHHHhcCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCccCCc---CCcHHHHHHHHHc
Q 003289 743 VIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPS---SVFPSLVDCSMIG 819 (833)
Q Consensus 743 li~~fg~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~~~~~p~~~~~~---~~l~~~~~~~~~~ 819 (833)
...+.. ..+.+..++..+.++.++-- ..+-| +..+++..++++.|..+.+. +.+-++|+-.+.+
T Consensus 668 --e~~~~~--ip~~~~~l~~~lLsp~lW~r-----~gNip----alvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaS 734 (960)
T KOG1992|consen 668 --EHSSGT--IPDSYSPLFPPLLSPNLWKR-----SGNIP----ALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIAS 734 (960)
T ss_pred --HhcCCC--CchhHHHHHHHhcCHHHHhh-----cCCcH----HHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcC
Confidence 333332 45567777777666665422 23445 45599999999999988743 3344578888888
Q ss_pred ccccCchhhh
Q 003289 820 ITVQHRRRIL 829 (833)
Q Consensus 820 l~~~~~~~~~ 829 (833)
-..+|-+..+
T Consensus 735 ka~Dh~GF~L 744 (960)
T KOG1992|consen 735 KANDHHGFYL 744 (960)
T ss_pred cccchhHHHH
Confidence 8788877655
No 10
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-28 Score=261.44 Aligned_cols=630 Identities=15% Similarity=0.204 Sum_probs=417.8
Q ss_pred CCCHHHHHHHHHHHHHHhcChh--HHHHHHHHhccCCCchHHHHHHHHHHHHHhh-----------cCCCCCChhhHHHH
Q 003289 17 HPDDAVRMQADRWLQDFQHTID--AWQVADNLLHDATSNLETLIFCSQTLRSKVQ-----------RDVEELPSEAVRGL 83 (833)
Q Consensus 17 ~~d~~~r~~A~~~L~~~q~s~~--aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~-----------~~w~~l~~~~~~~l 83 (833)
++|+..|+.|+++|.+++.++- .....-+.|.++..++..|..|+.+|||.+. .+|.+++.|.|+.+
T Consensus 12 SpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqV 91 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQV 91 (859)
T ss_pred CCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 5799999999999999998643 3334455666656788899999999999763 36999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh-hccccccCCccchHHHHHhcCCCCC--cHHHHHHHHhhchhhcccccc
Q 003289 84 QDSLNTLLKKFHKGPPKVRTQISIAVAALAV-HISAEDWGGGGIVNWLRDEMNSHPE--FVPGFLELLTVLPEEVFNYKI 160 (833)
Q Consensus 84 r~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~-~~~~~~Wp~~~~~~~l~~~~~~~~~--~~~~~L~iL~~l~Ee~~~~~~ 160 (833)
|+.++..|.. ..+...+--++++|.++. ..|.+.||+ ++..+....+..+. .-+..|+.+..++|++..
T Consensus 92 K~~il~tL~~---~ep~~~s~Aaq~va~IA~~ElP~n~wp~--li~~lv~nv~~~~~~~~k~~slealGyice~i~p--- 163 (859)
T KOG1241|consen 92 KNNILRTLGS---PEPRRPSSAAQCVAAIACIELPQNQWPE--LIVTLVSNVGEEQASMVKESSLEALGYICEDIDP--- 163 (859)
T ss_pred HHHHHHHcCC---CCCCccchHHHHHHHHHHhhCchhhCHH--HHHHHHHhcccccchHHHHHHHHHHHHHHccCCH---
Confidence 9999999875 223345556778888886 556689999 99999988876443 247889999999998752
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHhhccC-CCCccccccchhHHHHHhccCCc--
Q 003289 161 AARPERRRQFEKELTSQMEVALSTLTACLHI----NELKEQVLEAFASWLRLKH-RIPGSVLASHPLVLTALSSLHSE-- 233 (833)
Q Consensus 161 ~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~----~~~~~~~l~~~~~Wi~~~~-~i~~~~~~~~~ll~~~~~~L~~~-- 233 (833)
+.+.+....|+.-+.+.... ..++..+++|+-.-+++.. ++..+ ...+-+++++++.-+.|
T Consensus 164 -----------evl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E-~ern~iMqvvcEatq~~d~ 231 (859)
T KOG1241|consen 164 -----------EVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNE-MERNYIMQVVCEATQSPDE 231 (859)
T ss_pred -----------HHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccH-hhhceeeeeeeecccCCcH
Confidence 13445556665544444433 2688899999988777643 12111 11223455555554433
Q ss_pred chHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHHHHcCCch
Q 003289 234 ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDE 313 (833)
Q Consensus 234 ~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~~~~~~~l~~~~~~ 313 (833)
++..+|..||+.|++-.. +.+ .+++.
T Consensus 232 ~i~~aa~~ClvkIm~LyY-----------~~m--------------------------------------~~yM~----- 257 (859)
T KOG1241|consen 232 EIQVAAFQCLVKIMSLYY-----------EFM--------------------------------------EPYME----- 257 (859)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHH--------------------------------------HHHHH-----
Confidence 456666677766664221 000 00110
Q ss_pred hHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHhhcccccccCcccchHHHHHHHHHHhHHHHHHHHHHHHhhccCC-C
Q 003289 314 SMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYP-Q 392 (833)
Q Consensus 314 ~~~~l~~ll~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p-~ 392 (833)
..++..-+.-+..++++|...+++||+++++.-.+.. ...++.+..+ ..+......+.-+..+++++++.+..- +
T Consensus 258 -~alfaitl~amks~~deValQaiEFWsticeEEiD~~--~e~~e~~d~~-~~p~~~~fa~~a~~~v~P~Ll~~L~kqde 333 (859)
T KOG1241|consen 258 -QALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLA--IEYGEAVDQG-LPPSSKYFARQALQDVVPVLLELLTKQDE 333 (859)
T ss_pred -HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhcC-CCchhhHHHHHHHhHhhHHHHHHHHhCCC
Confidence 1223333445557788999999999998887532200 0000000000 001111223334556677777666552 2
Q ss_pred C--CCCCChhhhHHhHhhhhcccccCCccchhhhhhhchhHHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchh
Q 003289 393 D--YQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPA 470 (833)
Q Consensus 393 d--~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~ 470 (833)
+ .++|+ +.+|++-+|+=.....| |.++.++..-+.+.+. +++|+.+
T Consensus 334 ~~d~DdWn--------------------------p~kAAg~CL~l~A~~~~-D~Iv~~Vl~Fiee~i~-----~pdwr~r 381 (859)
T KOG1241|consen 334 DDDDDDWN--------------------------PAKAAGVCLMLFAQCVG-DDIVPHVLPFIEENIQ-----NPDWRNR 381 (859)
T ss_pred CcccccCc--------------------------HHHHHHHHHHHHHHHhc-ccchhhhHHHHHHhcC-----Ccchhhh
Confidence 2 12232 12236667776666777 6688888887776653 6899999
Q ss_pred hHHHHHHHHhhcccCccc-c----ccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccC
Q 003289 471 EAALFCIRAISTYVSVVE-A----EVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMS 545 (833)
Q Consensus 471 Eaal~~l~~i~e~~~~~~-~----~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~ 545 (833)
|++.++++++-++-.+.. . +.+|.++.... .+.-.++.|+-+++|+.++++..--....++.+.++.+..|++
T Consensus 382 eaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~--D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~ 459 (859)
T KOG1241|consen 382 EAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS--DPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN 459 (859)
T ss_pred hHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc--CchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh
Confidence 999999999998866542 2 23344444333 2245788999999999999887522122589999999999997
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhh---------hcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHH
Q 003289 546 TSEDTAAAAALAFRHICDDCRKKL---------CGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDA 616 (833)
Q Consensus 546 ~~~~v~~~A~~al~~l~~~~~~~l---------~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~ 616 (833)
+.+.|...+|.||..|++.|.+.. .|+.+.|++.+.+.-...+ .-...-|...|+|++-+|...|. ..
T Consensus 460 DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~d--gnqsNLR~AAYeALmElIk~st~-~v 536 (859)
T KOG1241|consen 460 DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRAD--GNQSNLRSAAYEALMELIKNSTD-DV 536 (859)
T ss_pred hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccc--cchhhHHHHHHHHHHHHHHcCcH-HH
Confidence 644499999999999999886533 2466666666655433211 12355789999999999998764 45
Q ss_pred HHHHHHhhhhhHHHHHHHHhcCCCc-ccccCchhhhH-HHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHhhcCChHH
Q 003289 617 KKALEMLCLPVVTPLQEIINQGPEI-LQKKHPRDLTV-HIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRT 694 (833)
Q Consensus 617 ~~~l~~l~~p~~~~l~~~~~~~~~~-~~~~~~~~~~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~v 694 (833)
.+.+..+..-++.+|.++++....+ .++.+.+++.. ...+|+.+.|.+. +...++-.++|..+.++++. ..+.-+
T Consensus 537 y~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~--~~~~~~~d~iM~lflri~~s-~~s~~v 613 (859)
T KOG1241|consen 537 YPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVG--SDIREVSDQIMGLFLRIFES-KRSAVV 613 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHcc--ccchhHHHHHHHHHHHHHcC-Cccccc
Confidence 5777788888899999998832211 12222333333 3367787877764 35667778999999999988 666677
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhc-CC---ccHhhhHHHHHHHhcCCcchhHHHHHHHHHHHH
Q 003289 695 MESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQH-QQ---PCFLYLSSEVIKIFGSDPSCASYLHNLIEALFK 766 (833)
Q Consensus 695 ~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~-~~---~~~L~~~~~li~~fg~~~~~~~~~~~~~~~l~~ 766 (833)
-|.+...+...+..+|+.|..++|.+.+++....++. .. .....+.+-+....+.+ +.++.+.+.+.+++
T Consensus 614 ~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~--i~py~d~~mt~Lvq 687 (859)
T KOG1241|consen 614 HEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDD--ILPYCDELMTVLVQ 687 (859)
T ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHH
Confidence 7888888888888899999999999999888777442 21 34456666666666665 66666666665544
No 11
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.94 E-value=1.3e-21 Score=203.27 Aligned_cols=625 Identities=14% Similarity=0.144 Sum_probs=382.0
Q ss_pred CCCHHHHHHHHHHHHHHhcChhHH--HHHHHHhccCCCchHHHHHHHHHHHHHhh-----------cCCCCCChhhHHHH
Q 003289 17 HPDDAVRMQADRWLQDFQHTIDAW--QVADNLLHDATSNLETLIFCSQTLRSKVQ-----------RDVEELPSEAVRGL 83 (833)
Q Consensus 17 ~~d~~~r~~A~~~L~~~q~s~~aw--~~~~~LL~~~~~~~~vrffaa~~L~~ki~-----------~~w~~l~~~~~~~l 83 (833)
+|||..|..|++.|.+.++.+-.- .+..+.|.+.+.+++.|..|+.+|+|-+. .+|..++.|.|+.+
T Consensus 16 spD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qv 95 (858)
T COG5215 16 SPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQV 95 (858)
T ss_pred CCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHH
Confidence 579999999999999999765431 22344444456788999999999999764 36999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh-hccccccCCccchHHHHHhcCCC-CC-cHHHHHHHHhhchhhcccccc
Q 003289 84 QDSLNTLLKKFHKGPPKVRTQISIAVAALAV-HISAEDWGGGGIVNWLRDEMNSH-PE-FVPGFLELLTVLPEEVFNYKI 160 (833)
Q Consensus 84 r~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~-~~~~~~Wp~~~~~~~l~~~~~~~-~~-~~~~~L~iL~~l~Ee~~~~~~ 160 (833)
|...+..|... .| -.-+--++.+|+|+. ..+...||+ +...++...+.. |. ...-.|.++...+|-..
T Consensus 96 K~~al~aL~s~--ep-r~~~~Aaql~aaIA~~Elp~~~wp~--lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~---- 166 (858)
T COG5215 96 KGMALRALKSP--EP-RFCTMAAQLLAAIARMELPNSLWPG--LMEEMVRNVGDEQPVSGKCESLGICGYHCESEA---- 166 (858)
T ss_pred HHHHHHHhcCC--cc-HHHHHHHHHHHHHHHhhCccccchH--HHHHHHHhccccCchHhHHHHHHHHHHHhhccC----
Confidence 99999988762 23 345667788888886 446679999 888888777643 22 23345777777777533
Q ss_pred cCChhHHHHHHHHHHHHHH-HHHHHHHhhhhhh---HHHHHHHHHHHHHhhccC-CCCccccccchhHHHHHhccCC--c
Q 003289 161 AARPERRRQFEKELTSQME-VALSTLTACLHIN---ELKEQVLEAFASWLRLKH-RIPGSVLASHPLVLTALSSLHS--E 233 (833)
Q Consensus 161 ~~~~~~r~~l~~~l~~~~~-~vl~~l~~~l~~~---~~~~~~l~~~~~Wi~~~~-~i~~~~~~~~~ll~~~~~~L~~--~ 233 (833)
+ +.+.+... -++.+....+..+ .++..+|+|+-.-+.+.. ++..+. ...-+++.+++.-+. .
T Consensus 167 ---P-------e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~-erNy~mqvvceatq~~d~ 235 (858)
T COG5215 167 ---P-------EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEE-ERNYFMQVVCEATQGNDE 235 (858)
T ss_pred ---H-------HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchh-hhchhheeeehhccCCcH
Confidence 1 11222222 2345555554432 578888999875333211 111110 111233333333322 2
Q ss_pred chHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHHHHcCCch
Q 003289 234 ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDE 313 (833)
Q Consensus 234 ~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~~~~~~~l~~~~~~ 313 (833)
++.-+|..||+.|+.... +.+ ..++.
T Consensus 236 e~q~aafgCl~kim~LyY-----------~fm--------------------------------------~~ymE----- 261 (858)
T COG5215 236 ELQHAAFGCLNKIMMLYY-----------KFM--------------------------------------QSYME----- 261 (858)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHH--------------------------------------HHHHH-----
Confidence 334444444444442111 000 00110
Q ss_pred hHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHhhcc---cccccCcccchHHHH-HHHHHHhHHHHHHHHHHHHhhcc
Q 003289 314 SMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRD---SYISFGNEASAEAER-SRRLQVFRSAYESLVSLVSFRVQ 389 (833)
Q Consensus 314 ~~~~l~~ll~~~~~~~~~v~~~~l~fw~~l~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~l~~k~~ 389 (833)
..+..+..+.+..+.++|...+++||+.+++.-.+-+ +|. ...| ... .=.....++++..|++.+.++=.
T Consensus 262 -~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~--pe~p---~qn~~fa~aav~dvlP~lL~LL~~q~e 335 (858)
T COG5215 262 -NALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYL--PEVP---AQNHGFARAAVADVLPELLSLLEKQGE 335 (858)
T ss_pred -HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhc--ccCc---hhhcchHHHHHHHHHHHHHHHHHhcCC
Confidence 1223444456678899999999999988876432110 111 1111 000 00122345566666655543221
Q ss_pred CCCCCCCCChhhhHHhHhhhhcccccCCccchhhhhhhchhHHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcch
Q 003289 390 YPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRP 469 (833)
Q Consensus 390 ~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~ 469 (833)
-| +.++|+.. .+++.+++-.....| +.++.-+..-+.+.+. +.+|..
T Consensus 336 d~-~~DdWn~s--------------------------maA~sCLqlfaq~~g-d~i~~pVl~FvEqni~-----~~~w~n 382 (858)
T COG5215 336 DY-YGDDWNPS--------------------------MAASSCLQLFAQLKG-DKIMRPVLGFVEQNIR-----SESWAN 382 (858)
T ss_pred Cc-cccccchh--------------------------hhHHHHHHHHHHHhh-hHhHHHHHHHHHHhcc-----Cchhhh
Confidence 11 12234321 113444443334445 5555555544444432 679999
Q ss_pred hhHHHHHHHHhhcccCccc-cccHHHHHhhccCCC--ChHHHHHHHHHHHHhchHHHhh--CCCChhhHHHHHHHHHhcc
Q 003289 470 AEAALFCIRAISTYVSVVE-AEVMPQVMALLPKLP--QQPQLLQTVCLTIGAYSKWFDA--ASSDPSILASVLSILTSGM 544 (833)
Q Consensus 470 ~Eaal~~l~~i~e~~~~~~-~~~l~~l~~~l~~l~--~~~~v~~t~~~~ig~y~~~l~~--~p~~~~~l~~~l~~l~~~l 544 (833)
+|++..+++++-++-.+.. ..++++.+..+...- +.-.++.|+.|++|+.++++.. +|. .+++...+..+.|+
T Consensus 383 reaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~--~Hl~~~vsa~liGl 460 (858)
T COG5215 383 REAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPC--GHLVLEVSASLIGL 460 (858)
T ss_pred HHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCcc--ccccHHHHHHHhhh
Confidence 9999999999987754443 345566666554332 2347999999999999999986 565 47888888888777
Q ss_pred CC-CHHHHHHHHHHHHHHHHHhhh-------hhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHH
Q 003289 545 ST-SEDTAAAAALAFRHICDDCRK-------KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDA 616 (833)
Q Consensus 545 ~~-~~~v~~~A~~al~~l~~~~~~-------~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~ 616 (833)
.+ |. +...++.++.+|++...+ .+.++-+.|++.+.+.-+.. .-....|..+++++|.+|.-.|+ ..
T Consensus 461 ~D~p~-~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~---~Ne~n~R~s~fsaLgtli~~~~d-~V 535 (858)
T COG5215 461 MDCPF-RSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELA---LNESNLRVSLFSALGTLILICPD-AV 535 (858)
T ss_pred hccch-HHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHHHhhcch-hH
Confidence 54 55 888999999999887653 33456666666654432211 12356799999999999988764 44
Q ss_pred HHHHHHhhhhhHHHHHHHHhcCCCc---ccccCchhh-hHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHhhcCCh
Q 003289 617 KKALEMLCLPVVTPLQEIINQGPEI---LQKKHPRDL-TVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDM 692 (833)
Q Consensus 617 ~~~l~~l~~p~~~~l~~~~~~~~~~---~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~ 692 (833)
.+.+-.+....+.++.++++-.... .|+....++ ...++.+..++|... ..+.++-.++|.++.+++++- ...
T Consensus 536 ~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~--~~ie~v~D~lm~Lf~r~les~-~~t 612 (858)
T COG5215 536 SDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRR--RDIEDVEDQLMELFIRILEST-KPT 612 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC--CCcccHHHHHHHHHHHHHhcc-CCc
Confidence 5666777888888888887643321 111112222 235677777777542 333445578999999999875 333
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCC---ccHhhhHHHHHHHhcCCcchhHHHHHHHHHHHH
Q 003289 693 RTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQ---PCFLYLSSEVIKIFGSDPSCASYLHNLIEALFK 766 (833)
Q Consensus 693 ~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~---~~~L~~~~~li~~fg~~~~~~~~~~~~~~~l~~ 766 (833)
.+-+.+...++.+..++++.+..+++.+++.+....+.... .+.+.+.+-+....|.| +..+-+.+...+.+
T Consensus 613 ~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~d--f~~y~d~~ms~LvQ 687 (858)
T COG5215 613 TAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTD--FNIYADVLMSSLVQ 687 (858)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHH
Confidence 44566778888888888889999999988888887754332 35566777777777766 56555555554443
No 12
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=9.6e-17 Score=172.38 Aligned_cols=651 Identities=13% Similarity=0.108 Sum_probs=365.3
Q ss_pred CCCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCCC-----CChhhHHHHHHHHHHHH
Q 003289 17 HPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEE-----LPSEAVRGLQDSLNTLL 91 (833)
Q Consensus 17 ~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~-----l~~~~~~~lr~~Ll~~l 91 (833)
.+|+..|+.|+..|.+++|.|+....|++++.+...++.+|.-||..++|||.+.|.. .+++++.+.|..+++-+
T Consensus 14 dada~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~Dek~e~K~~lieni 93 (970)
T COG5656 14 DADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADEKSEAKKYLIENI 93 (970)
T ss_pred ccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCcccHHHHHHHHHHH
Confidence 4688999999999999999999999999999875578889999999999999999986 44567888888888888
Q ss_pred HH-hcCCCHHHHHHHHHHHHHHHhhccc-cccCCccchHHHHHhcCCCC-CcHHHHHHHHhhchhhcccccccCChhHHH
Q 003289 92 KK-FHKGPPKVRTQISIAVAALAVHISA-EDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVFNYKIAARPERRR 168 (833)
Q Consensus 92 ~~-~~~~~~~v~~kL~~~la~l~~~~~~-~~Wp~~~~~~~l~~~~~~~~-~~~~~~L~iL~~l~Ee~~~~~~~~~~~~r~ 168 (833)
.. +..+|...|..+..++..++...+| +.|+ +.+.....+.++. .++..+|..+..+.. ..|+.. ..+|.
T Consensus 94 l~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg---l~p~~~nll~s~ea~~vy~gLlcl~elfk---ayRwk~-ndeq~ 166 (970)
T COG5656 94 LDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG---LFPKAANLLRSSEANHVYTGLLCLEELFK---AYRWKY-NDEQV 166 (970)
T ss_pred HHHHhcCCchHHHHHHHHHHHhccccCchhhcc---cchHHHHhhcccchhHHHHHHHHHHHHHH---HHhhhc-cchHh
Confidence 76 3356777887888888777776655 5676 5676666676543 334445555544432 223332 23444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHhhccCCCCccccccchhHHHHHhccCCcchHHHHHHHH
Q 003289 169 QFEKELTSQMEVALSTLTACLHI-----NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVI 243 (833)
Q Consensus 169 ~l~~~l~~~~~~vl~~l~~~l~~-----~~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~~~~L~~~~~~~~a~~~l 243 (833)
.+..-+....|.+.++-....+. .++...+++.|++.+.+ ++|.. |..++.+..++...
T Consensus 167 di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~--~LP~~--------------lsa~e~f~sw~ql~ 230 (970)
T COG5656 167 DILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYY--SLPDF--------------LSAIETFSSWFQLS 230 (970)
T ss_pred hHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHh--hCCHH--------------HccchhhHHHHHHH
Confidence 55555566667776665554442 25778899999998876 46553 33455666677777
Q ss_pred HHHHhhhccCC--CCCCCCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHH--HH--cC-CchhHH
Q 003289 244 SELIHYSAAGS--SGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVEL--IA--TG-SDESML 316 (833)
Q Consensus 244 ~~ii~~~~~~~--~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~~~~~~~--l~--~~-~~~~~~ 316 (833)
..+++++.+.. +-++ -++..-+|+-. .+ +.+.++.|.+..++...... .. .. -..+..
T Consensus 231 l~i~qkplp~evlsldp-----evRs~~~wvKc--kK--------Wa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~ 295 (970)
T COG5656 231 LRILQKPLPNEVLSLDP-----EVRSLSKWVKC--KK--------WAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPM 295 (970)
T ss_pred HHHHcCCCCHHHhccCh-----hhccccchhhh--hH--------HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 77777654211 0001 01111111100 00 11223444444443321110 00 00 001122
Q ss_pred HHHHHHhhhc---CCCcchhhhhHHHHHHHHHHHhhcccccccCcccchHHHHHHHHHHhHHHHHHHHHHHHhhccCCC-
Q 003289 317 IVHALLEVAS---HPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQ- 392 (833)
Q Consensus 317 ~l~~ll~~~~---~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~- 392 (833)
+++..++.+. ....=.+...+-|...|.+...+ ..++|....|+++-++.-.+--+-.+.
T Consensus 296 il~tffkqie~wgqgqLWlsd~~LYfi~~Fve~cv~----------------~d~tw~l~ePhlq~ii~~vIfPllc~se 359 (970)
T COG5656 296 ILATFFKQIEEWGQGQLWLSDIELYFIDFFVELCVD----------------ADQTWRLMEPHLQYIISGVIFPLLCLSE 359 (970)
T ss_pred HHHHHHHHHHHhhcCCeecchHHHHHHHHHHHHHhh----------------hHhhHhhhccHHHHHHHhhhhhhcCCCh
Confidence 2332222221 11222444455555445553321 135788889998766654433222222
Q ss_pred -CCCCCChhhhHHhHhhhhcccccCCccchhhhhhhchhHHHHHHHhhcChhH----HHHHHHHHHHHhHhhcCCCCCCc
Q 003289 393 -DYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDA----TLKILYIKFVEGVACCGNKHNEW 467 (833)
Q Consensus 393 -d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~----~l~~l~~~l~~~~~~~~~~~~~w 467 (833)
+.+.|+.|. ++|.+...|+-.++.+.= .|..+++.-+....+ +. ++.++.+.+++......+ -.+-
T Consensus 360 e~eElfEnDp-~eyirry~df~d~g~spd------laal~fl~~~~sKrk-e~TfqgiLsf~~sil~qsaa~psn-~dna 430 (970)
T COG5656 360 EEEELFENDP-DEYIRRYYDFFDNGLSPD------LAALFFLIISKSKRK-EETFQGILSFLLSILGQSAATPSN-IDNA 430 (970)
T ss_pred hhHHHHhcCH-HHHHHHhcchhcCCCChh------HHHHHHHHHHhcccc-hhhhhhHHHHHHHHHhcccCCCCc-cccH
Confidence 233344333 233211122221111100 013445544444444 43 455555555443221111 3567
Q ss_pred chhhHHHHHHHHhhcccCccccc---cHHHHH-hh-ccCCC-ChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHH
Q 003289 468 RPAEAALFCIRAISTYVSVVEAE---VMPQVM-AL-LPKLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILT 541 (833)
Q Consensus 468 ~~~Eaal~~l~~i~e~~~~~~~~---~l~~l~-~~-l~~l~-~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~ 541 (833)
++.|+|++.++++..-++. +++ .+..++ .+ +|.+. ....++..+|+++++|..-++.+. .+..+++...
T Consensus 431 rq~egalr~lasi~s~itk-~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~----ill~aye~t~ 505 (970)
T COG5656 431 RQAEGALRLLASIKSFITK-MSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNG----ILLEAYENTH 505 (970)
T ss_pred HHHhhHHHHHHHHHHHhcc-CchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccch----HHHHHHHHHH
Confidence 8999999999999984443 222 222222 22 24443 257899999999999977666543 5667777777
Q ss_pred hccCCCH-HHHHHHHHHHHHHHHHhh--hhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHH
Q 003289 542 SGMSTSE-DTAAAAALAFRHICDDCR--KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKK 618 (833)
Q Consensus 542 ~~l~~~~-~v~~~A~~al~~l~~~~~--~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~ 618 (833)
.++.+.. +|+..||.|+.-|..+-. ..+..|++..|+.+..+-+ ....+....+||++ +...+ ++..+
T Consensus 506 ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn-----~feiD~LS~vMe~f---Ve~fs-eELsp 576 (970)
T COG5656 506 NCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSN-----TFEIDPLSMVMESF---VEYFS-EELSP 576 (970)
T ss_pred HHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcc-----cccchHHHHHHHHH---HHHhH-Hhhch
Confidence 7775542 599999999999986543 4566899999999988755 35566677777776 34443 44445
Q ss_pred HHHHhhhhhHHHHHHHHhcCCCcc-------cccCchhhhHHHHHHHHhhhcc-CCcccHHHHHHHHHHHHHHHHHhhcC
Q 003289 619 ALEMLCLPVVTPLQEIINQGPEIL-------QKKHPRDLTVHIDRFAYIFRYV-NHPEAVADAIQRLWPIFKAIFDIRAW 690 (833)
Q Consensus 619 ~l~~l~~p~~~~l~~~~~~~~~~~-------~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~il~~~~~ 690 (833)
+...++..+.+++-++.+....++ |+.++. ....++.+.+.+-+. +.|.......+.+.|++.-++.+ +
T Consensus 577 fa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqma-asGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn--~ 653 (970)
T COG5656 577 FAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMA-ASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKN--E 653 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHH-HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhh--h
Confidence 555566666554444433221111 111111 123444444444333 33444444556778888888754 2
Q ss_pred ChHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcC----CccHhhhHHHHHHHhcC
Q 003289 691 DMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQ----QPCFLYLSSEVIKIFGS 749 (833)
Q Consensus 691 ~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~----~~~~L~~~~~li~~fg~ 749 (833)
-.++...+|.++.... -+...+.|..+.+.+.+........ ...+...++.+|. ||+
T Consensus 654 i~dfy~Ea~dildg~t-f~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfit-yG~ 714 (970)
T COG5656 654 ISDFYQEALDILDGYT-FMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFIT-YGK 714 (970)
T ss_pred HHHHHHHHHHHHhhhh-HHHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHH-hCc
Confidence 2355556666655311 1223445666666666544332221 1233445555554 564
No 13
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.79 E-value=4.5e-14 Score=155.69 Aligned_cols=652 Identities=16% Similarity=0.186 Sum_probs=338.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCCC----------
Q 003289 5 NTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEE---------- 74 (833)
Q Consensus 5 ~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~---------- 74 (833)
+.+.+.+.... ++|+..|.+|+..|.+.-.+++--...-+++.+...+.+.|++|+..|++.|.++|..
T Consensus 4 ~~ii~~L~~~l-s~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~ 82 (1005)
T KOG2274|consen 4 QAIIELLSGSL-SADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLI 82 (1005)
T ss_pred HHHHHHHHhhc-CCChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCc
Confidence 44455555553 5799999999999999998887433344455444567889999999999999999963
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC-CCCcHHHHHHHHhhchh
Q 003289 75 LPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS-HPEFVPGFLELLTVLPE 153 (833)
Q Consensus 75 l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~-~~~~~~~~L~iL~~l~E 153 (833)
.+.+.|..||+.|++.+.. ..+.+++-.+.+++.|+...+|+.||+ +++.+...+++ +.++....+++|..+..
T Consensus 83 ~~e~~K~~IRe~Ll~~l~~---sn~ki~~~vay~is~Ia~~D~Pd~WpE--lv~~i~~~l~~~n~n~i~~am~vL~el~~ 157 (1005)
T KOG2274|consen 83 VSEEVKALIREQLLNLLDD---SNSKIRSAVAYAISSIAAVDYPDEWPE--LVPFILKLLSSGNENSIHGAMRVLAELSD 157 (1005)
T ss_pred ccHHHHHHHHHHHHhhhhc---cccccchHHHHHHHHHHhccCchhhHH--HHHHHHHHHhccchhhhhhHHHHHHHHHH
Confidence 3456788999999998874 567789999999999999999999999 99999988874 33456677888877766
Q ss_pred hcccccccCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhccCCCCccccccchhHHHHHhccCCc
Q 003289 154 EVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE 233 (833)
Q Consensus 154 e~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~~~~L~~~ 233 (833)
|+....... +.......+..++.+...+-. ..+..+. ..+++..++.
T Consensus 158 ev~~ee~~~-------~~~~~l~~m~~~f~~~~~~s~--~~~~~aa-------------------~~~lf~sc~~----- 204 (1005)
T KOG2274|consen 158 EVDVEEMFF-------VGPVSLAEMYRIFALTIVYSI--ITRLGAA-------------------RGKLFTSCLT----- 204 (1005)
T ss_pred HHHHHHHhc-------ccccchhhhhhhhhhccccch--hHHHHhh-------------------hhHHHHHHHH-----
Confidence 654210000 000000111111111111100 0000000 0011111111
Q ss_pred chHHHHHHHHHHHHhhhccCCCCCCCCch-hHHHHHHHHHHhhHHH-hhhcc-CCHHHHHHHHHHHHHHhhHHHHHHHcC
Q 003289 234 ILSEASVNVISELIHYSAAGSSGGATVNM-PLIQVIVPQIMSLKAH-LTDSS-KDEEDVKAIARLFADMGDSYVELIATG 310 (833)
Q Consensus 234 ~~~~~a~~~l~~ii~~~~~~~~~~~~~~~-~~i~~l~~~~~~l~~~-l~~~~-~d~~~~~~l~~l~~~~~~~~~~~l~~~ 310 (833)
+.+...... +.+. .++..+++..+..... +...+ .|.-....+.+.++.+++.++.++..-
T Consensus 205 ---------li~~~~e~~-------~~~~~~~~s~~l~~~~~~l~h~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~ 268 (1005)
T KOG2274|consen 205 ---------LITNVEEVW-------AEHVKVFLSQILNQFMDILEHPLQRNDGSDFSLRMEILKCLTQLVENFPSLINPF 268 (1005)
T ss_pred ---------HHhHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHhhHHhhhHH
Confidence 111111000 0111 1222222222221111 11111 122233345566666666665544310
Q ss_pred -----Cch---hHHHHHHHH-hhhcC------------CC----cchhhhhHHHHHHHHHHHhhcccccccCcccchHHH
Q 003289 311 -----SDE---SMLIVHALL-EVASH------------PE----YDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAE 365 (833)
Q Consensus 311 -----~~~---~~~~l~~ll-~~~~~------------~~----~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~ 365 (833)
+.. ....+...+ .-..+ |. ....-..++|-+.+........
T Consensus 269 ~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i~i~eF~s~i~t~~~~~~-------------- 334 (1005)
T KOG2274|consen 269 MMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVIQIVEFLSTIVTNRFLSK-------------- 334 (1005)
T ss_pred HHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhhhhHHHHHHHHHHHHHHHH--------------
Confidence 000 011111111 11111 00 1233466777666655322100
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhccCCCC-CCCCChh-------hhHHhHhhhhcccccCCccchhhhhhhchhHHHHHHH
Q 003289 366 RSRRLQVFRSAYESLVSLVSFRVQYPQD-YQDLSLE-------DLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAA 437 (833)
Q Consensus 366 ~~~~~~~~~~~~~~ll~~l~~k~~~p~d-~~~~~~d-------~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~ 437 (833)
..+..+..++..++.-++.+++ .+.|..| |.+. ..-|.. +.|.+..+.
T Consensus 335 ------ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~-~~~~~~-----------------~rd~~~~v~ 390 (1005)
T KOG2274|consen 335 ------TIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDG-YTARIS-----------------VRDLLLEVI 390 (1005)
T ss_pred ------HhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCC-chhhhh-----------------HHHHHHHHH
Confidence 0001111122222222222221 1122211 1111 122444 667777777
Q ss_pred hhcChhHHHHHHHHH----HHHhHh-hcCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcc-CC--CChHHHH
Q 003289 438 SVLGGDATLKILYIK----FVEGVA-CCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KL--PQQPQLL 509 (833)
Q Consensus 438 ~~l~~~~~l~~l~~~----l~~~~~-~~~~~~~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~-~l--~~~~~v~ 509 (833)
.-.|.. -+.-+.+. +.+.-. ..-+....|.--|+++++..++..... ..+.+.-+...+. .+ ..-|.+.
T Consensus 391 ~~f~~~-~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~~--~dd~l~~l~~~~~~~l~~~e~P~Ll 467 (1005)
T KOG2274|consen 391 TTFGNE-GINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDDA--NDDKLIELTIMIDNGLVYQESPFLL 467 (1005)
T ss_pred Hhccch-hhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCcc--hHHHHHHHHHHHHhhcccccCHHHH
Confidence 766643 33323333 332211 112236689999999999888773221 1233333333321 22 2246666
Q ss_pred HHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCc
Q 003289 510 QTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMS--TSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGE 587 (833)
Q Consensus 510 ~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~--~~~~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~ 587 (833)
..++++++.|++=+..+|+ ++..+++..+++++ .+..++.+|+.+|-..| -.+.+.|..+.+++.+.++..+
T Consensus 468 ~Ra~~~i~~fs~~~~~~~~---~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L~qlas~- 541 (1005)
T KOG2274|consen 468 LRAFLTISKFSSSTVINPQ---LLQHFLNATVNALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPMILDGLLQLASK- 541 (1005)
T ss_pred HHHHHHHHHHHhhhccchh---HHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc--CceeccccchHHHHHHHHHccc-
Confidence 6999999988887666776 77777777766654 34447777777666666 2344669999999999998763
Q ss_pred CCCCCCHhhHHHHHHHHHHHHhcCChHH--HH-----------------HHHHHhhhhhHHHHHHHHhcCCC--------
Q 003289 588 GSLKVSAEDSLHLVEALSMVITELPQVD--AK-----------------KALEMLCLPVVTPLQEIINQGPE-------- 640 (833)
Q Consensus 588 ~~~~l~~~~~~~l~eai~~vi~~~~~~~--~~-----------------~~l~~l~~p~~~~l~~~~~~~~~-------- 640 (833)
.+.+....+||+++.++.--|... .. ++.-.+...++..+-+......+
T Consensus 542 ----~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPs 617 (1005)
T KOG2274|consen 542 ----SSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPS 617 (1005)
T ss_pred ----ccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 567888999999999887654321 00 11111122222222111111000
Q ss_pred -------cccccCchhhhHHHHHHHHhhhccCCcccHH-HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhhh-
Q 003289 641 -------ILQKKHPRDLTVHIDRFAYIFRYVNHPEAVA-DAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKR- 711 (833)
Q Consensus 641 -------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~~~~- 711 (833)
+.++........+++.|++++|..+ .|.. ..+..++|.+.++. .+..|.+.+...-+|++..+..-.+
T Consensus 618 lisil~~~~~~~~~~l~~~aidvLttvvr~tp--~pL~~~l~~~~FpaVak~t-lHsdD~~tlQ~~~EcLra~Is~~~eq 694 (1005)
T KOG2274|consen 618 LISVLQLNADKAPAGLCAIAIDVLTTVLRNTP--SPLPNLLICYAFPAVAKIT-LHSDDHETLQNATECLRALISVTLEQ 694 (1005)
T ss_pred HHHHHcCcccccCchhhHHHHHHHHHHHhcCC--CCccHHHHHHHhHHhHhhe-eecCChHHHHhHHHHHHHHHhcCHHH
Confidence 0011112223347899999999754 3443 35678888888876 6778888888888888865543111
Q ss_pred ----hhhhh--HHHHHHHHHHHHhh--cCCccHh--hhHHHHHHHhcCCcchhHHHHHHHHHHHHH
Q 003289 712 ----FMGIT--IGAILEEIQGLYQQ--HQQPCFL--YLSSEVIKIFGSDPSCASYLHNLIEALFKR 767 (833)
Q Consensus 712 ----~~~~~--l~~l~~~l~~~~~~--~~~~~~L--~~~~~li~~fg~~~~~~~~~~~~~~~l~~~ 767 (833)
...|- +-.++..+.+.... ....++. .+...+|..+|+. ..+.+.+++.+++.+
T Consensus 695 ~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~e--l~~n~d~IL~Avisr 758 (1005)
T KOG2274|consen 695 LLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSE--LGPNLDQILRAVISR 758 (1005)
T ss_pred HHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHH--hchhHHHHHHHHHHH
Confidence 11111 11333333322221 2222221 4566777777775 566666666655543
No 14
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=6.7e-13 Score=141.31 Aligned_cols=338 Identities=16% Similarity=0.171 Sum_probs=228.8
Q ss_pred CchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCCCCChhhH
Q 003289 1 MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAV 80 (833)
Q Consensus 1 ~~~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~ 80 (833)
|....+++.....+|.++|+..|.+|++-|.+|..+|++.+-|.-||.. +..+..+..|+..|-+.+.+. ..+|.+++
T Consensus 1 m~sLaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~-gs~pYs~mlAst~L~Klvs~~-t~lpl~qr 78 (1082)
T KOG1410|consen 1 MQSLAQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLER-GSYPYSQMLASTCLMKLVSRK-TPLPLEQR 78 (1082)
T ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHcCC-CCCcHHHH
Confidence 7889999999999999999999999999999999999999999999987 556678999999998777655 47999999
Q ss_pred HHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhccccccCCc--------cchHHHHHhcCCC-CCcHHHHHHHHhh
Q 003289 81 RGLQDSLNTLLKKFH-KGPPKVRTQISIAVAALAVHISAEDWGGG--------GIVNWLRDEMNSH-PEFVPGFLELLTV 150 (833)
Q Consensus 81 ~~lr~~Ll~~l~~~~-~~~~~v~~kL~~~la~l~~~~~~~~Wp~~--------~~~~~l~~~~~~~-~~~~~~~L~iL~~ 150 (833)
..||+++++++..-. +-+++|...|++.+|.+-+.. |-+. +++.++...++.+ .+++.+.+.+|..
T Consensus 79 ldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~g----W~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsq 154 (1082)
T KOG1410|consen 79 LDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLG----WFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQ 154 (1082)
T ss_pred HHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhcc----ccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHH
Confidence 999999999998731 235789999999999998754 4332 4667777777654 4678899999999
Q ss_pred chhhcccccccCC--hhHHH--HHHHH-HHHHHHHHHHHHHhhh----hh-------hHHHHHHHHHHHH-HhhccCCCC
Q 003289 151 LPEEVFNYKIAAR--PERRR--QFEKE-LTSQMEVALSTLTACL----HI-------NELKEQVLEAFAS-WLRLKHRIP 213 (833)
Q Consensus 151 l~Ee~~~~~~~~~--~~~r~--~l~~~-l~~~~~~vl~~l~~~l----~~-------~~~~~~~l~~~~~-Wi~~~~~i~ 213 (833)
|..|....+...+ +.||. .+++. +.+-+.--++.+.... ++ ..+...+++|+.- +|.-...-+
T Consensus 155 LvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEs 234 (1082)
T KOG1410|consen 155 LVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDES 234 (1082)
T ss_pred HHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhccccccccccccc
Confidence 9999987655433 33332 23322 2222222233333322 11 1356777888753 232211111
Q ss_pred ccc-------------cccchhHHHHHhccCC--cchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHH
Q 003289 214 GSV-------------LASHPLVLTALSSLHS--EILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAH 278 (833)
Q Consensus 214 ~~~-------------~~~~~ll~~~~~~L~~--~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~ 278 (833)
+++ +..+..+++.|+..++ |++++.|++|++.+.+..++... ..++.+.++.++.++..+.+.
T Consensus 235 sed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN--~aeRa~yl~~Lv~Gvk~il~n 312 (1082)
T KOG1410|consen 235 SEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFN--GAERAKYLQHLVEGVKRILEN 312 (1082)
T ss_pred cccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHhC
Confidence 211 2355678888888774 68899999999999987765431 125567888888776543221
Q ss_pred hhhccCCHHHHHHHHHHHHHHhhHHHH--HH-HcCCchhHHH-HHHHHhhhcCCC--cchhhhhHHHHHHHHHHH
Q 003289 279 LTDSSKDEEDVKAIARLFADMGDSYVE--LI-ATGSDESMLI-VHALLEVASHPE--YDIASMTFNFWHSLQVIL 347 (833)
Q Consensus 279 l~~~~~d~~~~~~l~~l~~~~~~~~~~--~l-~~~~~~~~~~-l~~ll~~~~~~~--~~v~~~~l~fw~~l~~~~ 347 (833)
..+-.|.+.++.+||++..+-.+|-- ++ .++.++..++ .++-+.-+.|=+ ..-....+.+|.+++..+
T Consensus 313 -p~~LsD~~nyHeFCRllaRlktNYQL~ELv~v~~Y~e~irLiAeFTv~SLq~wefa~nSvyyLlt~WqRmvaSV 386 (1082)
T KOG1410|consen 313 -PQGLSDPANYHEFCRLLARLKTNYQLGELVKVECYPEVIRLIAEFTVTSLQHWEFAPNSVYYLLTLWQRMVASV 386 (1082)
T ss_pred -CcCCCCcchHHHHHHHHHHHHhhhhhHhhhccCCcHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhcC
Confidence 12345677788999999988766521 22 1222332222 233333333321 233467899999888754
No 15
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.9e-13 Score=148.57 Aligned_cols=170 Identities=14% Similarity=0.131 Sum_probs=127.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCC-----CCChhhHH
Q 003289 7 VKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVE-----ELPSEAVR 81 (833)
Q Consensus 7 v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~-----~l~~~~~~ 81 (833)
|.+.++.. .++|+..++-|++.|++.++.|+.......+..+.+.+..+|..|...+||-|.+.|. ++|+|+|.
T Consensus 2 vvq~Lq~A-ts~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK~ 80 (978)
T KOG1993|consen 2 VVQVLQQA-TSQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEKD 80 (978)
T ss_pred HHHHHHHh-cCCCcccchhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCCcccCCHHHHH
Confidence 44556665 4689999999999999999999999888888776566788999999999999999994 79999999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC---CC--cHHHHHHHHhhchhhcc
Q 003289 82 GLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH---PE--FVPGFLELLTVLPEEVF 156 (833)
Q Consensus 82 ~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~~---~~--~~~~~L~iL~~l~Ee~~ 156 (833)
.||..++.++.. ..+-+.-|.+.++|.+|.-++|.+||+ +++++.+.+++. .+ ..--.|.+|..+--+..
T Consensus 81 ~iR~~Ll~~~~E---~~nQlaiQ~AvlisrIARlDyPreWP~--Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~La 155 (978)
T KOG1993|consen 81 FIRCNLLLHSDE---ENNQLAIQNAVLISRIARLDYPREWPD--LFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALA 155 (978)
T ss_pred HHHHHHHHhccc---chhHHHHHHHHHHHHHHhcCCCccchh--HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 999999888764 556788899999999999999999999 999999887653 11 11122333333323333
Q ss_pred cccccCChhHHHHHHHHHHHHHHHHHHHHHhhh
Q 003289 157 NYKIAARPERRRQFEKELTSQMEVALSTLTACL 189 (833)
Q Consensus 157 ~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l 189 (833)
++| -.+=+..+.+-.|.|+.++.-.+
T Consensus 156 t~R-------L~a~rk~F~el~~~I~~~l~~~l 181 (978)
T KOG1993|consen 156 TKR-------LLADRKAFYELAPEILTILAPIL 181 (978)
T ss_pred HhH-------HhhhhHHHHHHhHHHHHHHHHHH
Confidence 322 22334456666777777666544
No 16
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=99.73 E-value=1.9e-17 Score=156.08 Aligned_cols=141 Identities=26% Similarity=0.434 Sum_probs=126.8
Q ss_pred CHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCcHHHHHHHHhhchhhccc-ccccCChhHHHHHHHHHHH
Q 003289 98 PPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFN-YKIAARPERRRQFEKELTS 176 (833)
Q Consensus 98 ~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~~~~~~~~~L~iL~~l~Ee~~~-~~~~~~~~~r~~l~~~l~~ 176 (833)
|++|++|+|.+++.++.+.+|+.||+ +++++++.+++++.+..+++++|+.++||+.+ .+.....+||.++++.+.+
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~--~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~ 78 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPD--FLEDLLQLLQSSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRS 78 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTT--HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCch--HHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHH
Confidence 68999999999999999999999999 99999999988777888999999999999986 3555668899999999999
Q ss_pred HHHHHHHHHHhhhhh------hHHHHHHHHHHHHHhhccCCCCccccccchhHHHHHhccCCcchHHHHHHHH
Q 003289 177 QMEVALSTLTACLHI------NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVI 243 (833)
Q Consensus 177 ~~~~vl~~l~~~l~~------~~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~~~~L~~~~~~~~a~~~l 243 (833)
+++.|++++.+.++. +++...+++|+.+|+.+ ++.+.+.++++++.+++.|++++++++|++||
T Consensus 79 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~---~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 79 NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISW---IPIELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTT---S-HHHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHh---CCHHHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 999999999998876 46788999999999997 67777778889999999999999999999997
No 17
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.49 E-value=1.3e-09 Score=121.66 Aligned_cols=144 Identities=16% Similarity=0.131 Sum_probs=110.7
Q ss_pred CchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCCC-----C
Q 003289 1 MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEE-----L 75 (833)
Q Consensus 1 ~~~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~-----l 75 (833)
|+....|.++-.+ .++||..++.|++-|++..+.++.-.....+..+.+.+..+|.-|+..+++-|.++|.+ +
T Consensus 1 M~~~~vv~~~~~a--qs~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i 78 (947)
T COG5657 1 MEDLPVVKQLDLA--QSPDPPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSI 78 (947)
T ss_pred CCchHHHHHHHhh--cCCCCchHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCC
Confidence 6666666665544 35788889999999999999998544445555444467789999999999999999964 6
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-CCcHHHHHHHHhhc
Q 003289 76 PSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-PEFVPGFLELLTVL 151 (833)
Q Consensus 76 ~~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~~-~~~~~~~L~iL~~l 151 (833)
.+++...+|..++.++.+ .+..+.=|.+.+++.++.-++|++||+ +++++...++.. .......+..+..+
T Consensus 79 ~p~e~v~IR~~l~~lii~---s~n~l~iq~a~avs~IA~~DfPdeWpT--L~~DL~~~Ls~~D~~tn~~~L~~~h~I 150 (947)
T COG5657 79 LPDENVLIRDELFSLIIS---SSNQLQIQNALAVSRIARLDFPDEWPT--LVPDLLSLLSEKDMVTNENSLRVLHHI 150 (947)
T ss_pred CCccchHHHHHHHHHHHc---ccchHHHHHHHHHHHHHhccCcccchh--HHHHHHhhhcccchHHHHHHHHHHHHH
Confidence 666777999999999987 455555588999999999999999999 999999988762 22334455555544
No 18
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=5.1e-07 Score=104.31 Aligned_cols=330 Identities=15% Similarity=0.118 Sum_probs=205.7
Q ss_pred CCCcchhhHHHHHHHHhhcccCcccc----ccH-HHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHH
Q 003289 464 HNEWRPAEAALFCIRAISTYVSVVEA----EVM-PQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLS 538 (833)
Q Consensus 464 ~~~w~~~Eaal~~l~~i~e~~~~~~~----~~l-~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~ 538 (833)
.++-+-+-|||++++.++..+.++-+ +.+ +.++..+-+ +.+++|..-+.-.+-.+++...... ...||+.+++
T Consensus 400 DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~-~~~~rV~ahAa~al~nf~E~~~~~~-l~pYLd~lm~ 477 (1075)
T KOG2171|consen 400 DPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDS-TQNVRVQAHAAAALVNFSEECDKSI-LEPYLDGLME 477 (1075)
T ss_pred CCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcc-cCchHHHHHHHHHHHHHHHhCcHHH-HHHHHHHHHH
Confidence 56678889999999999999987622 223 334443332 3478888888887777766554321 1137888887
Q ss_pred HHHhccCC--CHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHH
Q 003289 539 ILTSGMST--SEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDA 616 (833)
Q Consensus 539 ~l~~~l~~--~~~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~ 616 (833)
-.+..+.. +..|+..|..|+...++.+...+.||.+.+|..+.+++.+.++.. ...-|.+.+|+++.+..++..++.
T Consensus 478 ~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d-~r~LrgktmEcisli~~AVGke~F 556 (1075)
T KOG2171|consen 478 KKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKD-LRELRGKTMECLSLIARAVGKEKF 556 (1075)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchh-hHHHHhhHHHHHHHHHHHhhhhhh
Confidence 44444433 235999999999999999999999999999999999998753211 245688899999999888887777
Q ss_pred HHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHhhcC----C-
Q 003289 617 KKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAW----D- 691 (833)
Q Consensus 617 ~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~----~- 691 (833)
.+..+.+++-+...- . .....+. ..+.+ .+...+.+.+.++ ..+.+++..+||.+....+.-+. |
T Consensus 557 ~~~a~eliqll~~~~----~-~~~~~dd-~~~sy--~~~~warmc~ilg--~~F~p~L~~Vmppl~~ta~~~p~~~~~d~ 626 (1075)
T KOG2171|consen 557 LPLAEELIQLLLELQ----G-SDQDDDD-PLRSY--MIAFWARMCRILG--DDFAPFLPVVMPPLLKTARLDPDVALSDE 626 (1075)
T ss_pred hHhHHHHHHHHHhhc----c-cchhhcc-ccHHH--HHHHHHHHHHHhc--hhhHhHHHHHhHHHHHhhccCCcccCcCc
Confidence 766666655554321 1 1111111 12223 3445555555553 45677888888777665432110 0
Q ss_pred --------------------------hHH---HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCC----ccHhh
Q 003289 692 --------------------------MRT---MESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQ----PCFLY 738 (833)
Q Consensus 692 --------------------------~~v---~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~----~~~L~ 738 (833)
..+ .+.+|..+......++..+.|++.++++..+-..+...| .+++.
T Consensus 627 ~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~ 706 (1075)
T KOG2171|consen 627 EDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAE 706 (1075)
T ss_pred hhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 011 124677777666666777788887777733333222221 12232
Q ss_pred hHHHHHHHhcC-CcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCccCCcCCcH
Q 003289 739 LSSEVIKIFGS-DPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFP 810 (833)
Q Consensus 739 ~~~~li~~fg~-~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~~~~~p~~~~~~~~l~ 810 (833)
++-.++..... -+.+...+.++...++...+..+.. .-.++++.++++-+..+++.+....+..+...
T Consensus 707 ~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~----E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~ 775 (1075)
T KOG2171|consen 707 SMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEE----EPETEVLSEILESFAECIEVMGDNCLNEDGLE 775 (1075)
T ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhc----CCcHHHHHHHHHHHHHHHHhcCcccCCcHHHH
Confidence 22222221111 0113347788888877777766653 45688999999999999997765555544333
No 19
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=3.8e-05 Score=84.99 Aligned_cols=391 Identities=10% Similarity=0.056 Sum_probs=240.0
Q ss_pred HhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhhcccccCCccchhhhhhhchhHHHHHHHhhcChhHHHHHHHH
Q 003289 372 VFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYI 451 (833)
Q Consensus 372 ~~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~ 451 (833)
..+|+..+.++.++.-|. ++ .-|-. |...+.-+| +.|.+- ...++...++...+
T Consensus 399 ~Lt~iV~qalp~ii~lm~-D~--sl~Vk-dTaAwtlgr-------------------I~d~l~---e~~~n~~~l~~~l~ 452 (859)
T KOG1241|consen 399 KLTPIVIQALPSIINLMS-DP--SLWVK-DTAAWTLGR-------------------IADFLP---EAIINQELLQSKLS 452 (859)
T ss_pred hhhHHHhhhhHHHHHHhc-Cc--hhhhc-chHHHHHHH-------------------HHhhch---hhcccHhhhhHHHH
Confidence 456777788888876665 22 22332 222333333 334443 33444555665665
Q ss_pred HHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCccc---------cccHHHHHhhccCC---C--ChHHHHHHHHHHHH
Q 003289 452 KFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE---------AEVMPQVMALLPKL---P--QQPQLLQTVCLTIG 517 (833)
Q Consensus 452 ~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~~---------~~~l~~l~~~l~~l---~--~~~~v~~t~~~~ig 517 (833)
.+-+.+. ..-+....++|++..+++.+.+.. +++.+.|++.|... + ....+|.++.+.++
T Consensus 453 ~l~~gL~------DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALm 526 (859)
T KOG1241|consen 453 ALLEGLN------DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALM 526 (859)
T ss_pred HHHHHhh------hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHH
Confidence 5555542 334667889999999998765421 23556666665422 2 24679999999888
Q ss_pred hchHHHhhCCCChhhHHHHHHH-------HHhccC-----CC-----HHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHH
Q 003289 518 AYSKWFDAASSDPSILASVLSI-------LTSGMS-----TS-----EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVY 580 (833)
Q Consensus 518 ~y~~~l~~~p~~~~~l~~~l~~-------l~~~l~-----~~-----~~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l 580 (833)
..-++.... ..+.+..+ +-+.+. .. .++++.-|..+..+.+...+..-+..+.+|+.+
T Consensus 527 ElIk~st~~-----vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lf 601 (859)
T KOG1241|consen 527 ELIKNSTDD-----VYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLF 601 (859)
T ss_pred HHHHcCcHH-----HHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHH
Confidence 765443322 22222222 112221 11 158888899999998888888889999999999
Q ss_pred HHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHh
Q 003289 581 RTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYI 660 (833)
Q Consensus 581 ~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 660 (833)
..+++.+.+ .-..+.++-+|+.++..++ ....+|+..+..-+...+.+... ..-...+++.++.+
T Consensus 602 lri~~s~~s----~~v~e~a~laV~tl~~~Lg-~~F~kym~~f~pyL~~gL~n~~e----------~qVc~~aVglVgdl 666 (859)
T KOG1241|consen 602 LRIFESKRS----AVVHEEAFLAVSTLAESLG-KGFAKYMPAFKPYLLMGLSNFQE----------YQVCAAAVGLVGDL 666 (859)
T ss_pred HHHHcCCcc----ccchHHHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHhhcchH----------HHHHHHHHHHHHHH
Confidence 999986432 2245667778887777764 34446665543333333322211 11123466778888
Q ss_pred hhccCCcccHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHh--hcC--Cc--
Q 003289 661 FRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQ--QHQ--QP-- 734 (833)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~--~~~--~~-- 734 (833)
.|.++ ..+.++...+|..+.+.+++-.-+-+|.-.+..+|+-+....|.+|.+|+..++..+.+.-. ..+ +.
T Consensus 667 ~raL~--~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~ 744 (859)
T KOG1241|consen 667 ARALE--DDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMV 744 (859)
T ss_pred HHHHH--hhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHH
Confidence 88775 45778888999999888887767778888899999999999999999999999888766542 223 11
Q ss_pred --------cHhhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhhcccccCCcC-CchHHHHHHHHHHHHhhCCCccC-
Q 003289 735 --------CFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSR-PDVADDCFLLASRCIRYCPQLFI- 804 (833)
Q Consensus 735 --------~~L~~~~~li~~fg~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~-pd~~~~~f~l~~~~~~~~p~~~~- 804 (833)
.+|...+-++..+|.+.. ..++.+...++++++.......+. --+..+..+++..+...+|..+.
T Consensus 745 dYvd~LRe~~leay~gi~qglk~~~~-----~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~ 819 (859)
T KOG1241|consen 745 DYVDELREGILEAYTGIIQGLKTHAD-----VMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIK 819 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc-----hhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhh
Confidence 445566666777774321 122334455566666542222222 22577888999999987774433
Q ss_pred ---CcCCcHHHHHHHHHccc
Q 003289 805 ---PSSVFPSLVDCSMIGIT 821 (833)
Q Consensus 805 ---~~~~l~~~~~~~~~~l~ 821 (833)
.++....+++-+..+-.
T Consensus 820 ~~~~~~~i~~~L~~~~k~~~ 839 (859)
T KOG1241|consen 820 LFLDEDWIKDFLNEGRKSST 839 (859)
T ss_pred hhcchHHHHHHHHHhhhhhh
Confidence 33444555555444443
No 20
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=7.7e-07 Score=96.23 Aligned_cols=288 Identities=16% Similarity=0.181 Sum_probs=173.8
Q ss_pred HHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcC
Q 003289 508 LLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNG 586 (833)
Q Consensus 508 v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~ 586 (833)
+|+.....++-++..+... +++.+++++-..+.+.+ +++.++..|+..+++.|-+-+.||++.++..+..++..
T Consensus 371 LRkCSAAaLDVLanvf~~e-----lL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~D 445 (885)
T KOG2023|consen 371 LRKCSAAALDVLANVFGDE-----LLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDD 445 (885)
T ss_pred HhhccHHHHHHHHHhhHHH-----HHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhcc
Confidence 6776666777777767654 89999999988887765 69999999999999999999999999999998888763
Q ss_pred cCC-------CCC--------CH------------------hhHHHHHHHHHHHHhcCCh---HHHHHHHHHhhhhhHHH
Q 003289 587 EGS-------LKV--------SA------------------EDSLHLVEALSMVITELPQ---VDAKKALEMLCLPVVTP 630 (833)
Q Consensus 587 ~~~-------~~l--------~~------------------~~~~~l~eai~~vi~~~~~---~~~~~~l~~l~~p~~~~ 630 (833)
... +++ .. +...++-||.++....+.. ++..+|++.++..++-.
T Consensus 446 KkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~a 525 (885)
T KOG2023|consen 446 KKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFA 525 (885)
T ss_pred CccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 210 001 00 0112233343333333211 12335555544444444
Q ss_pred HHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHh
Q 003289 631 LQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRA-WDMRTMESLCRACKYAVRTS 709 (833)
Q Consensus 631 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~-~~~~v~e~~~~~~~~~~~~~ 709 (833)
++..-. +.+....+.++++..+++..-.-..+++-++|.+.+--+..+ .|.++-- ..+|+..+...+
T Consensus 526 f~kYQ~-----------KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfP-LLEClSsia~AL 593 (885)
T KOG2023|consen 526 FGKYQK-----------KNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFP-LLECLSSIASAL 593 (885)
T ss_pred HHHHhh-----------cceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHH-HHHHHHHHHHHH
Confidence 433322 223335567777666653211113567888876654343333 3444432 445666666667
Q ss_pred hhhhhhhHHHHHHH----HHHHH---hh--c-C---------CccHhhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHH
Q 003289 710 KRFMGITIGAILEE----IQGLY---QQ--H-Q---------QPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTC 770 (833)
Q Consensus 710 ~~~~~~~l~~l~~~----l~~~~---~~--~-~---------~~~~L~~~~~li~~fg~~~~~~~~~~~~~~~l~~~~~~ 770 (833)
|..+.||.+++.+. +.... .+ + + ..+.|++++.+++..|+. +.+.+.+-- +..-.+.
T Consensus 594 ~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~--ie~Lva~sn--l~~lll~ 669 (885)
T KOG2023|consen 594 GVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSH--IEPLVAQSN--LLDLLLQ 669 (885)
T ss_pred hccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhc--hHHHhhhcc--HHHHHHH
Confidence 77777776665442 22111 11 1 1 236799999999999987 444433311 2222222
Q ss_pred hhcccccCCcCCchHHHHHHHHHHHHhhCCCccCCc-------------CCcHHHHHHHHHccc
Q 003289 771 LLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPS-------------SVFPSLVDCSMIGIT 821 (833)
Q Consensus 771 ~l~~~~~~~~~pd~~~~~f~l~~~~~~~~p~~~~~~-------------~~l~~~~~~~~~~l~ 821 (833)
++ .++-||++++.|.|+..+.+.|+..+.+. +..-++.+-|++|++
T Consensus 670 C~-----~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiG 728 (885)
T KOG2023|consen 670 CL-----QDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIG 728 (885)
T ss_pred Hh-----ccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHH
Confidence 23 37889999999999999999998887751 223345566666654
No 21
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.00 E-value=5.4e-05 Score=85.49 Aligned_cols=571 Identities=13% Similarity=0.134 Sum_probs=282.3
Q ss_pred CCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccccccCCccchHHH
Q 003289 51 TSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWL 130 (833)
Q Consensus 51 ~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l 130 (833)
+.+-..||.|..=|-+.++++-..|..+.-.-+-.-|++++.. .+.-|.|--..+++-++.+....+-.. .++.+
T Consensus 16 ssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D---~ngEVQnlAVKClg~lvsKvke~~le~--~ve~L 90 (1233)
T KOG1824|consen 16 SSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLED---KNGEVQNLAVKCLGPLVSKVKEDQLET--IVENL 90 (1233)
T ss_pred CCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhc---cCcHHHHHHHHHHHHHHhhchHHHHHH--HHHHH
Confidence 3455689999999999999998788877655555567777765 445677766677888876655333333 44555
Q ss_pred HHhcCCCCCc-HHH----HHHHHhhchhhcccccccCChhHHHHHHHHHHHHHHHHHHHHHhhhhhh----HHHHHHHHH
Q 003289 131 RDEMNSHPEF-VPG----FLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----ELKEQVLEA 201 (833)
Q Consensus 131 ~~~~~~~~~~-~~~----~L~iL~~l~Ee~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~----~~~~~~l~~ 201 (833)
...+-++.++ .+. +..+...+|--..+ .+ ++ .-.+.+.+.+.+..... .++-.+++.
T Consensus 91 ~~~~~s~keq~rdissi~Lktvi~nl~P~~~~-~l--a~-----------tV~~~~t~~l~~~i~~qe~~sai~~e~lDi 156 (1233)
T KOG1824|consen 91 CSNMLSGKEQLRDISSIGLKTVIANLPPSSSS-FL--AA-----------TVCKRITPKLKQAISKQEDVSAIKCEVLDI 156 (1233)
T ss_pred hhhhccchhhhccHHHHHHHHHHhcCCCcccc-cc--cc-----------HHHHHHHHHHHHHhhhcccchhhHHHHHHH
Confidence 4443222221 111 22222223321111 11 11 01222333333333221 233333443
Q ss_pred HHHHh-hccCCCCccccccchhHHHHHhccCCc--chHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHH
Q 003289 202 FASWL-RLKHRIPGSVLASHPLVLTALSSLHSE--ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAH 278 (833)
Q Consensus 202 ~~~Wi-~~~~~i~~~~~~~~~ll~~~~~~L~~~--~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~ 278 (833)
+...+ ++|.-+|. ....++..+...|+.+ .++..|+-++..+....... -...+++.+..+
T Consensus 157 l~d~lsr~g~ll~~---fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~------ly~~li~~Ll~~------- 220 (1233)
T KOG1824|consen 157 LADVLSRFGTLLPN---FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD------LYVELIEHLLKG------- 220 (1233)
T ss_pred HHHHHHhhcccCcc---hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHhc-------
Confidence 33332 22211111 1123444445556665 35788888888887654310 122233333222
Q ss_pred hhhccCCHHHHHHHHHHHHHHhhHHHHHHHcCCchhHHHHHHHHhhh---cCCCcchhhhhHHHHHHHHHHHhhcccccc
Q 003289 279 LTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVA---SHPEYDIASMTFNFWHSLQVILTKRDSYIS 355 (833)
Q Consensus 279 l~~~~~d~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~l~~ll~~~---~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~ 355 (833)
+.+. ......+.+.+++.+++-..-.-+. .+...++.++..++ +..+++..+.+++-...|...-.
T Consensus 221 L~~~-~q~~~~rt~Iq~l~~i~r~ag~r~~---~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp------- 289 (1233)
T KOG1824|consen 221 LSNR-TQMSATRTYIQCLAAICRQAGHRFG---SHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCP------- 289 (1233)
T ss_pred cCCC-CchHHHHHHHHHHHHHHHHhcchhh---cccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhCh-------
Confidence 1111 1122334444555554433222221 23344556666655 45577888888877665554221
Q ss_pred cCcccchHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCC-hhhhHH------hHhhhhcccccCCccchhhhhhhc
Q 003289 356 FGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLS-LEDLKE------FKHTRYDLACCSSSTLTESVMLIA 428 (833)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~-~d~~~~------f~~~R~~~~~~~~~~~~~~~~~~~ 428 (833)
....|+..++++.++.+..|++.+...+ +|+.++ +.++-..+.-|-+.+| +.|||
T Consensus 290 ---------------~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SW---kVRRa 351 (1233)
T KOG1824|consen 290 ---------------KEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSW---KVRRA 351 (1233)
T ss_pred ---------------hhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhH---HHHHH
Confidence 1345677888999999999987543211 221111 1222222223456666 46677
Q ss_pred hhHHHHHHHhhcChhHHHHHHHHHHHHhHhh---cCCCCCCcchhhHHHHHHHHhhcccCcc-ccccHHHHHhhccCCCC
Q 003289 429 VADVLIDAASVLGGDATLKILYIKFVEGVAC---CGNKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPKLPQ 504 (833)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~---~~~~~~~w~~~Eaal~~l~~i~e~~~~~-~~~~l~~l~~~l~~l~~ 504 (833)
++.++..+.... .+++..+++.+.-.+-. -..++..-..+++.+-++..+..-...- +++.+.+ .+.|.
T Consensus 352 AaKcl~a~IsSR--~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~-----~g~~s 424 (1233)
T KOG1824|consen 352 AAKCLEAVISSR--LEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQ-----GGTPS 424 (1233)
T ss_pred HHHHHHHHHhcc--HHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhc-----cCCcc
Confidence 777777655332 23555555544322100 0000001111222222222222111100 0011111 11111
Q ss_pred h-HHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHH
Q 003289 505 Q-PQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRT 582 (833)
Q Consensus 505 ~-~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~ 582 (833)
+ ..++.+. +.++..+-..+.... +.+..+-..+..++...+..+.++++.++..+.-
T Consensus 425 ~~~~L~~~~---------------------~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~ 483 (1233)
T KOG1824|consen 425 DLSMLSDQV---------------------PLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIY 483 (1233)
T ss_pred chHHHHhhh---------------------HHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhh
Confidence 0 1222222 222222222233222 2455666677788888888888888888877766
Q ss_pred HhcCcCCCCCCHhhHHHHHHHHHHHHh---cCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHH
Q 003289 583 AVNGEGSLKVSAEDSLHLVEALSMVIT---ELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAY 659 (833)
Q Consensus 583 ~l~~~~~~~l~~~~~~~l~eai~~vi~---~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 659 (833)
.++.. ...-..-+++++.+.+ .-|++...+++..+..|++....+-.- +-...++-+...
T Consensus 484 ~l~Dk------Ssss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fy-----------KisaEAL~v~~~ 546 (1233)
T KOG1824|consen 484 SLNDK------SSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFY-----------KISAEALLVCQQ 546 (1233)
T ss_pred hcCCc------cchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchH-----------hhhHHHHHHHHH
Confidence 55532 1122334455554443 345677778888777777654422111 111122222222
Q ss_pred ---hhhccCCc--ccHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Q 003289 660 ---IFRYVNHP--EAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQ 730 (833)
Q Consensus 660 ---~~~~~~~~--~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 730 (833)
++|-...| -.+.+++..+.....+-++.-..|.+|.|++..+++..+..+|.+....+|..+..+....++
T Consensus 547 lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~n 622 (1233)
T KOG1824|consen 547 LVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGN 622 (1233)
T ss_pred HHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc
Confidence 33333221 123455666666666666666778999999999999999999988877788777766665554
No 22
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.99 E-value=1.1e-09 Score=89.80 Aligned_cols=67 Identities=22% Similarity=0.373 Sum_probs=63.3
Q ss_pred HHHHHHHHhcC-hhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCC--------CCChhhHHHHHHHHHHHHH
Q 003289 26 ADRWLQDFQHT-IDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVE--------ELPSEAVRGLQDSLNTLLK 92 (833)
Q Consensus 26 A~~~L~~~q~s-~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~--------~l~~~~~~~lr~~Ll~~l~ 92 (833)
|+++|++++++ |++|..+..++.+++.+.++|++|+++|+++|+++|. .+|++++..||+.|++.+.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 78999999999 8999999999976667899999999999999999999 9999999999999999875
No 23
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=98.91 E-value=2.4e-07 Score=99.14 Aligned_cols=206 Identities=17% Similarity=0.236 Sum_probs=120.5
Q ss_pred HHHHHHhhhcCC-CcchhhhhHHHHHHHHHHHhhcccccccCcccchHHHHHHHHHHh--HHHHHHHHH-HHHhhccCCC
Q 003289 317 IVHALLEVASHP-EYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVF--RSAYESLVS-LVSFRVQYPQ 392 (833)
Q Consensus 317 ~l~~ll~~~~~~-~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ll~-~l~~k~~~p~ 392 (833)
+.+++......+ .+.+...++.|...+.+.... ...| +|++.+++. +++..|.+-+
T Consensus 142 vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~--------------------~~lf~~~~~L~~Iie~VI~Pnl~~~e 201 (370)
T PF08506_consen 142 VWNLLTKISQQPKYDILVSKALQFLSSVAESPHH--------------------KNLFENKPHLQQIIEKVIFPNLCLRE 201 (370)
T ss_dssp HHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHH--------------------HTTT-SHHHHHHHHHHTHHHHHS--H
T ss_pred HHHHHHHhhhcccccHHHHHHHHHHHHHHcchhH--------------------HHHhCCHHHHHHHHHHhccCccCCCH
Confidence 345444544444 356777889997654432211 1122 456666665 3344444432
Q ss_pred -CCCCCChhhhHHhHhh-hhcccc-cCCccchhhhhhhchhHHHHHHHhhcChhHHHHHHHHHHHHhHhh-cCCCCCCcc
Q 003289 393 -DYQDLSLEDLKEFKHT-RYDLAC-CSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVAC-CGNKHNEWR 468 (833)
Q Consensus 393 -d~~~~~~d~~~~f~~~-R~~~~~-~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~-~~~~~~~w~ 468 (833)
|.+.|++|. .+| |+++.+ |..| +|+|+.|+++.++...+ +.+.+.+.+.+++.+.+ ..+++.+|+
T Consensus 202 ~D~ElfEddP----~EYIrrd~e~sd~~T------rR~AA~dfl~~L~~~~~-~~v~~i~~~~i~~~l~~y~~~~~~~w~ 270 (370)
T PF08506_consen 202 EDEELFEDDP----EEYIRRDLEGSDSDT------RRRAACDFLRSLCKKFE-KQVTSILMQYIQQLLQQYASNPSNNWR 270 (370)
T ss_dssp HHHHHHHHSH----HHHHHHHSCSS---S------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-TTT-HH
T ss_pred HHHHHHccCH----HHHHHhhccccccCC------cHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHhhCCcccHH
Confidence 222333222 233 777665 3333 78889999999987766 44555554444444331 012367999
Q ss_pred hhhHHHHHHHHhhcccCccc------cc--cHHHHHhh--cc----CCCChHHHHHHHHHHHHhchHHHhhCCCChhhHH
Q 003289 469 PAEAALFCIRAISTYVSVVE------AE--VMPQVMAL--LP----KLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILA 534 (833)
Q Consensus 469 ~~Eaal~~l~~i~e~~~~~~------~~--~l~~l~~~--l~----~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~ 534 (833)
..++|++.+++++....... ++ -+.+++.. ++ ....||.++..+|+++..|...+.. +.+.
T Consensus 271 ~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~-----~~l~ 345 (370)
T PF08506_consen 271 SKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPK-----EQLL 345 (370)
T ss_dssp HHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-H-----HHHH
T ss_pred HHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCH-----HHHH
Confidence 99999999999998764321 11 13444432 22 2235899999999999999887654 2788
Q ss_pred HHHHHHHhccCCCH-HHHHHHHHHH
Q 003289 535 SVLSILTSGMSTSE-DTAAAAALAF 558 (833)
Q Consensus 535 ~~l~~l~~~l~~~~-~v~~~A~~al 558 (833)
.+++.+.+++.++. .|+..||.|+
T Consensus 346 ~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 346 QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 99999999998876 5889999875
No 24
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=98.30 E-value=2e-06 Score=90.82 Aligned_cols=115 Identities=21% Similarity=0.342 Sum_probs=99.5
Q ss_pred hhhhHHHHHHHHHHHHhhc----CCccHhhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHH
Q 003289 713 MGITIGAILEEIQGLYQQH----QQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDC 788 (833)
Q Consensus 713 ~~~~l~~l~~~l~~~~~~~----~~~~~L~~~~~li~~fg~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~pd~~~~~ 788 (833)
...++|++++.++.+|+++ +.+..|++.+.++.+.|+. +.+.+..+++.++.+|+.++. ++..++||....|
T Consensus 65 ~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~--~~~~v~~I~~~vf~~Tl~MI~--~d~~~yPe~r~~f 140 (319)
T PF08767_consen 65 ANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGEL--IQPQVPQILEAVFECTLPMIN--KDFEEYPEHRVNF 140 (319)
T ss_dssp HHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGG--CCCCHHHHHHHHHHHHHHHHS--STSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHH--hhhhhChHHHHHH
Confidence 3467889999999999964 5689999999999999985 567788889999999999998 5688999999999
Q ss_pred HHHHHHHHhhCCCccC--CcCCcHHHHHHHHHcccccCchhhhhh
Q 003289 789 FLLASRCIRYCPQLFI--PSSVFPSLVDCSMIGITVQHRRRILIC 831 (833)
Q Consensus 789 f~l~~~~~~~~p~~~~--~~~~l~~~~~~~~~~l~~~~~~~~~~~ 831 (833)
|.|+..+.++||..++ +++.+..++++.++|++.++|+....|
T Consensus 141 f~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~ 185 (319)
T PF08767_consen 141 FKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETG 185 (319)
T ss_dssp HHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 9999999999998876 566799999999999999999887654
No 25
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.22 E-value=0.023 Score=65.20 Aligned_cols=162 Identities=11% Similarity=0.069 Sum_probs=106.6
Q ss_pred CCcchhhHHHHHHHHhhcccCccccccHHHHHhhcc-CCC-ChHHHHHHHHHHHHhchHHHhh-CCC----ChhhHHHHH
Q 003289 465 NEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFDA-ASS----DPSILASVL 537 (833)
Q Consensus 465 ~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~-~l~-~~~~v~~t~~~~ig~y~~~l~~-~p~----~~~~l~~~l 537 (833)
.+--.+++..|..+++..+-++.-+++++.+...+. ... +.+.+..-++.+.++|.+.+.. +|. ...+..+++
T Consensus 491 ss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~ 570 (1233)
T KOG1824|consen 491 SSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMY 570 (1233)
T ss_pred hHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHH
Confidence 344578999999888887766554555555444432 121 2467888888899999887764 221 113555655
Q ss_pred HHHHhccC----CCHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCCh
Q 003289 538 SILTSGMS----TSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ 613 (833)
Q Consensus 538 ~~l~~~l~----~~~~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~ 613 (833)
....+-+. +.+ |+.+|-.++..+.....+.+..+++..+..+.+=+.+ .-.|.-.++|+..+..+.-.
T Consensus 571 ~~tl~rL~a~d~Dqe-VkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~n-------EiTRl~AvkAlt~Ia~S~l~ 642 (1233)
T KOG1824|consen 571 DCTLQRLKATDSDQE-VKERAISCMGQIIANFGDFLGNELPRTLPILLERLGN-------EITRLTAVKALTLIAMSPLD 642 (1233)
T ss_pred HHHHHHHhcccccHH-HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-------hhHHHHHHHHHHHHHhccce
Confidence 55544443 344 9999999999999999988888888888777665543 33688999999988766322
Q ss_pred HHHHHHHHHhhhhhHHHHHHH
Q 003289 614 VDAKKALEMLCLPVVTPLQEI 634 (833)
Q Consensus 614 ~~~~~~l~~l~~p~~~~l~~~ 634 (833)
-...+.+..++..+.+.+.+.
T Consensus 643 i~l~~~l~~il~~l~~flrK~ 663 (1233)
T KOG1824|consen 643 IDLSPVLTEILPELASFLRKN 663 (1233)
T ss_pred eehhhhHHHHHHHHHHHHHHH
Confidence 233345555555555544443
No 26
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=98.02 E-value=2.8e-05 Score=85.18 Aligned_cols=193 Identities=15% Similarity=0.210 Sum_probs=118.0
Q ss_pred hhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCccccc
Q 003289 566 RKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKK 645 (833)
Q Consensus 566 ~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~ 645 (833)
+..+.|++.++++.+..++..++ ..+.+++|+++.+++....+ ...++...++.-+.+.+..+.+++. +.
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~~-----s~ENeylMk~iMRvl~~~~e-~~~p~~~~il~~L~~il~~v~kNPs----nP 86 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKPG-----SAENEYLMKCIMRVLSVLQE-DILPIAVEILQHLTAILKEVSKNPS----NP 86 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT------STC-HHHHHHHHHHHHHSTT-TTGGGHHHHHHHHHHHHHHHHTS-------H
T ss_pred HHHhhhhHHHHHHHHHHHHhcCC-----CccchHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHhCCC----Cc
Confidence 46788999999999999987542 25679999999999998753 3445566667777666666666543 23
Q ss_pred CchhhhHHHHHHHHhhhccCC--cccHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 003289 646 HPRDLTVHIDRFAYIFRYVNH--PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEE 723 (833)
Q Consensus 646 ~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~ 723 (833)
...|+ ..+.++.++|.... |+.+..+.+.+||.+..+++. +|.| +-||+++++..+++.
T Consensus 87 ~FnHy--lFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~-----dV~E------------F~PYvfQIla~Lle~ 147 (435)
T PF03378_consen 87 RFNHY--LFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQ-----DVQE------------FIPYVFQILAQLLEL 147 (435)
T ss_dssp HHHHH--HHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHT-----T-TT------------THHHHHHHHHHHHHH
T ss_pred chhhh--HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHH-----HHHH------------HHHHHHHHHHHHHHc
Confidence 45566 78999999998643 333456778999999999875 3333 445555444444432
Q ss_pred HHHHHhhcCCccHhhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCcc
Q 003289 724 IQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLF 803 (833)
Q Consensus 724 l~~~~~~~~~~~~L~~~~~li~~fg~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~~~~~p~~~ 803 (833)
++. +...+.+.+++..+..+. ..+.++.+-+..+++..++++.|..+
T Consensus 148 -------~~~-----------------~~~p~~y~~L~~~Ll~p~---------lWe~~gniPalvrLL~a~i~k~~~~i 194 (435)
T PF03378_consen 148 -------RPS-----------------SPLPDAYKQLFPPLLSPA---------LWERRGNIPALVRLLQAYIKKDPSFI 194 (435)
T ss_dssp -------SS-------------------S--TTTGGGHHHHTSGG---------GGGSTTTHHHHHHHHHHHHHHHGGG-
T ss_pred -------CCC-----------------CCCcHHHHHHHHHHcCcc---------hhccCCCcCcHHHHHHHHHHhCchhh
Confidence 220 112334444555544333 33445556666699999999999988
Q ss_pred CCcCCcHHHHHHHHHcc
Q 003289 804 IPSSVFPSLVDCSMIGI 820 (833)
Q Consensus 804 ~~~~~l~~~~~~~~~~l 820 (833)
...+.+++++..--..+
T Consensus 195 ~~~~~l~~iLgvFQkLi 211 (435)
T PF03378_consen 195 VANNQLEPILGVFQKLI 211 (435)
T ss_dssp ---S-CHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHH
Confidence 77777776665443333
No 27
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.004 Score=74.62 Aligned_cols=155 Identities=17% Similarity=0.148 Sum_probs=100.3
Q ss_pred hhHHHHHHHhhcChh--HHH-HHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcc-ccccHHHHHhhccCCC-
Q 003289 429 VADVLIDAASVLGGD--ATL-KILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPKLP- 503 (833)
Q Consensus 429 ~~d~l~~~~~~l~~~--~~l-~~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~-~~~~l~~l~~~l~~l~- 503 (833)
+.+.+.+++..+=+| .++ .++.+++.+.+.+.. +..||-+||+|.|+.-+-.+=+.+ ..+.+|++...+...-
T Consensus 1014 Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt--~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmD 1091 (1702)
T KOG0915|consen 1014 VQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLT--SKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMD 1091 (1702)
T ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH
Confidence 555666666544322 222 333345555544322 578999999999998877664433 2355666665554322
Q ss_pred -ChHHHHHHHHHHHHhchHHHhh-----CCC-ChhhHHHHHHHHH-hc-cCCCHHHHHHHHHHHHHHHHHhhhhhhcCHH
Q 003289 504 -QQPQLLQTVCLTIGAYSKWFDA-----ASS-DPSILASVLSILT-SG-MSTSEDTAAAAALAFRHICDDCRKKLCGYLD 574 (833)
Q Consensus 504 -~~~~v~~t~~~~ig~y~~~l~~-----~p~-~~~~l~~~l~~l~-~~-l~~~~~v~~~A~~al~~l~~~~~~~l~~~l~ 574 (833)
.+..||.++=.+....++...+ |+. ..+.+..++++++ .| ++.-+.|+..+-..+.++++..+..|.||.+
T Consensus 1092 DIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~ 1171 (1702)
T KOG0915|consen 1092 DIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFP 1171 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhh
Confidence 1556666655444444443332 332 2368999999987 33 4443459999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 003289 575 GLYNVYRTAVN 585 (833)
Q Consensus 575 ~ll~~l~~~l~ 585 (833)
.++-.+.+.+.
T Consensus 1172 ~LIp~ll~~~s 1182 (1702)
T KOG0915|consen 1172 KLIPLLLNAYS 1182 (1702)
T ss_pred HHHHHHHHHcc
Confidence 99999888765
No 28
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.98 E-value=0.052 Score=60.66 Aligned_cols=171 Identities=11% Similarity=0.133 Sum_probs=106.8
Q ss_pred hhHHHHHHHhhcChh----HHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcc-CCC
Q 003289 429 VADVLIDAASVLGGD----ATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KLP 503 (833)
Q Consensus 429 ~~d~l~~~~~~l~~~----~~l~~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~-~l~ 503 (833)
+.++...++..+|.. ...+.+++.+-.++.. .+ .+.-+.+.+++.+...+.....+++++|...+. .+.
T Consensus 736 ~~etv~ri~~~lg~~diderleE~lidgil~Afqe-----qt-t~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLn 809 (1172)
T KOG0213|consen 736 VAETVSRIVGRLGAADIDERLEERLIDGILYAFQE-----QT-TEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLN 809 (1172)
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHh-----cc-cchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhc
Confidence 777888777777742 2333344333322221 11 112256678888888877666788999887654 343
Q ss_pred -ChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHhh-hhhhcCHHHHHHH
Q 003289 504 -QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST--SEDTAAAAALAFRHICDDCR-KKLCGYLDGLYNV 579 (833)
Q Consensus 504 -~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~--~~~v~~~A~~al~~l~~~~~-~~l~~~l~~ll~~ 579 (833)
..+.+|..+..++|+.+.-++...+. +.+..+=..|...++. |+ |-..--.|+..++.... ..+.|=+..|+..
T Consensus 810 nksa~vRqqaadlis~la~Vlktc~ee-~~m~~lGvvLyEylgeeypE-vLgsILgAikaI~nvigm~km~pPi~dllPr 887 (1172)
T KOG0213|consen 810 NKSAKVRQQAADLISSLAKVLKTCGEE-KLMGHLGVVLYEYLGEEYPE-VLGSILGAIKAIVNVIGMTKMTPPIKDLLPR 887 (1172)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhccHH-HHHHHhhHHHHHhcCcccHH-HHHHHHHHHHHHHHhccccccCCChhhhccc
Confidence 25899999999999999988876441 2333333445566654 45 77776777777765442 3456777777777
Q ss_pred HHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCC
Q 003289 580 YRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 612 (833)
Q Consensus 580 l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~ 612 (833)
+.+++.+. -.+.++..+.-+|.+...-|
T Consensus 888 ltPILknr-----heKVqen~IdLvg~Iadrgp 915 (1172)
T KOG0213|consen 888 LTPILKNR-----HEKVQENCIDLVGTIADRGP 915 (1172)
T ss_pred chHhhhhh-----HHHHHHHHHHHHHHHHhcCc
Confidence 77776642 23456667777777766544
No 29
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=0.001 Score=72.93 Aligned_cols=169 Identities=19% Similarity=0.284 Sum_probs=119.3
Q ss_pred hhHHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhccC-CC-ChH
Q 003289 429 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-LP-QQP 506 (833)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~~-l~-~~~ 506 (833)
+.+.++++....+...++..+...+.+ ..||...+++..+++++++.+..-+..+++++..+.. +- .||
T Consensus 239 a~kai~~~~~~~aVK~llpsll~~l~~---------~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~ 309 (569)
T KOG1242|consen 239 AAKAIMRCLSAYAVKLLLPSLLGSLLE---------AKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKP 309 (569)
T ss_pred HHHHHHHhcCcchhhHhhhhhHHHHHH---------HhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCH
Confidence 344556666555555566666555543 3799999999999999999876555667777777653 33 499
Q ss_pred HHHHHHHHHHHhchHHHhhCCCChhh-----------------------------------HHHHHHHHHhccCCCH-HH
Q 003289 507 QLLQTVCLTIGAYSKWFDAASSDPSI-----------------------------------LASVLSILTSGMSTSE-DT 550 (833)
Q Consensus 507 ~v~~t~~~~ig~y~~~l~~~p~~~~~-----------------------------------l~~~l~~l~~~l~~~~-~v 550 (833)
.||.++..++-+|+..+.. |+...+ +.-+++++-+++++.. ..
T Consensus 310 evr~a~~~~l~~~~svidN-~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~ 388 (569)
T KOG1242|consen 310 EVRKAGIETLLKFGSVIDN-PDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSI 388 (569)
T ss_pred HHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchh
Confidence 9999999999999987763 321111 2222233333433221 25
Q ss_pred HHHHHHHHHHHHHHh--hhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCC
Q 003289 551 AAAAALAFRHICDDC--RKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 612 (833)
Q Consensus 551 ~~~A~~al~~l~~~~--~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~ 612 (833)
...++..+.++|... +..+.||++.|+..+...+.. ..++.|.-...++|.++..+.
T Consensus 389 kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d-----~~PEvR~vaarAL~~l~e~~g 447 (569)
T KOG1242|consen 389 KRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDD-----AVPEVRAVAARALGALLERLG 447 (569)
T ss_pred hhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcC-----CChhHHHHHHHHHHHHHHHHH
Confidence 567888888888877 678899999999999988764 247899999999998887764
No 30
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.51 E-value=0.33 Score=56.08 Aligned_cols=454 Identities=14% Similarity=0.155 Sum_probs=235.8
Q ss_pred cCCCHHHHHHHHHHHHHHhcC-hhHHHHH-HHHhcc-CCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHH
Q 003289 16 HHPDDAVRMQADRWLQDFQHT-IDAWQVA-DNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLK 92 (833)
Q Consensus 16 ~~~d~~~r~~A~~~L~~~q~s-~~aw~~~-~~LL~~-~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~ 92 (833)
.++|.+.|+-+.-++..+... |+...++ ..+..+ .+.++.+|-.|..++-+-. +++-...+-..+.+.+.
T Consensus 52 ~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-------~~~~~~~l~~~v~~ll~ 124 (526)
T PF01602_consen 52 SSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-------TPEMAEPLIPDVIKLLS 124 (526)
T ss_dssp SSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--------SHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-------ccchhhHHHHHHHHHhc
Confidence 466889999999999887664 5534444 333332 2467789999999888753 45555566666666655
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC-CCCcHHHHHHHHhhchhhcccccccCChhHHHHHH
Q 003289 93 KFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS-HPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFE 171 (833)
Q Consensus 93 ~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~-~~~~~~~~L~iL~~l~Ee~~~~~~~~~~~~r~~l~ 171 (833)
. ..++||++-+.++..++...+. .-+.. +++.+.+.+.. ++......+.++..+ ... + +.
T Consensus 125 ~---~~~~VRk~A~~~l~~i~~~~p~-~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~-------~--~~--- 185 (526)
T PF01602_consen 125 D---PSPYVRKKAALALLKIYRKDPD-LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI--KCN-------D--DS--- 185 (526)
T ss_dssp S---SSHHHHHHHHHHHHHHHHHCHC-CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH--HCT-------H--HH---
T ss_pred C---CchHHHHHHHHHHHHHhccCHH-HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH--ccC-------c--ch---
Confidence 4 5679999999999988876442 22221 34555555543 233344555666555 000 0 00
Q ss_pred HHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHhhccCCCCcccccc--chhHHHHHhccCC--cchHHHHHHHHHH
Q 003289 172 KELTSQMEVALSTLTACLHI--NELKEQVLEAFASWLRLKHRIPGSVLAS--HPLVLTALSSLHS--EILSEASVNVISE 245 (833)
Q Consensus 172 ~~l~~~~~~vl~~l~~~l~~--~~~~~~~l~~~~~Wi~~~~~i~~~~~~~--~~ll~~~~~~L~~--~~~~~~a~~~l~~ 245 (833)
.....+.+...+.+.+.. +-++..+++++..+.... .-.. ..+++.+...+.+ +.+.-.|+.++.
T Consensus 186 --~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~------~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~- 256 (526)
T PF01602_consen 186 --YKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPME------PEDADKNRIIEPLLNLLQSSSPSVVYEAIRLII- 256 (526)
T ss_dssp --HTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred --hhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCC------hhhhhHHHHHHHHHHHhhccccHHHHHHHHHHH-
Confidence 001223334444433222 234556667666544321 1111 2455555555542 223333333333
Q ss_pred HHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHHHHcCCchhHHHHHHHHhhh
Q 003289 246 LIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVA 325 (833)
Q Consensus 246 ii~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~l~~ll~~~ 325 (833)
.... ...+++.+++.+..+ + . +.|.+..-...+.+..++..+...+. .....+.+.
T Consensus 257 --~l~~---------~~~~~~~~~~~L~~l---L-~-s~~~nvr~~~L~~L~~l~~~~~~~v~--------~~~~~~~~l 312 (526)
T PF01602_consen 257 --KLSP---------SPELLQKAINPLIKL---L-S-SSDPNVRYIALDSLSQLAQSNPPAVF--------NQSLILFFL 312 (526)
T ss_dssp --HHSS---------SHHHHHHHHHHHHHH---H-T-SSSHHHHHHHHHHHHHHCCHCHHHHG--------THHHHHHHH
T ss_pred --Hhhc---------chHHHHhhHHHHHHH---h-h-cccchhehhHHHHHHHhhcccchhhh--------hhhhhhhee
Confidence 2221 122344444433222 2 2 34443332344555555555433332 112222233
Q ss_pred c-CCCcchhhhhHHHHHHHHHHHhhcccccccCcccchHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCChhhhHH
Q 003289 326 S-HPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKE 404 (833)
Q Consensus 326 ~-~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~ 404 (833)
. .++..+...+++-...+.+.- ....++.++..-+- + .++
T Consensus 313 ~~~~d~~Ir~~~l~lL~~l~~~~------------------------n~~~Il~eL~~~l~-------~---~~d----- 353 (526)
T PF01602_consen 313 LYDDDPSIRKKALDLLYKLANES------------------------NVKEILDELLKYLS-------E---LSD----- 353 (526)
T ss_dssp HCSSSHHHHHHHHHHHHHH--HH------------------------HHHHHHHHHHHHHH-------H---C-------
T ss_pred cCCCChhHHHHHHHHHhhccccc------------------------chhhHHHHHHHHHH-------h---ccc-----
Confidence 3 566677777777655443211 11223333332220 0 000
Q ss_pred hHhhhhcccccCCccchhhhhhhchhHHHHHHHhhcCh--hHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhc
Q 003289 405 FKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGG--DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAIST 482 (833)
Q Consensus 405 f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~--~~~l~~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e 482 (833)
.++|.+ +...+..++....+ +.+++.+.+.+.. ......+.++..+..+..
T Consensus 354 -~~~~~~-----------------~i~~I~~la~~~~~~~~~~v~~l~~ll~~---------~~~~~~~~~~~~i~~ll~ 406 (526)
T PF01602_consen 354 -PDFRRE-----------------LIKAIGDLAEKFPPDAEWYVDTLLKLLEI---------SGDYVSNEIINVIRDLLS 406 (526)
T ss_dssp -HHHHHH-----------------HHHHHHHHHHHHGSSHHHHHHHHHHHHHC---------TGGGCHCHHHHHHHHHHH
T ss_pred -hhhhhh-----------------HHHHHHHHHhccCchHHHHHHHHHHhhhh---------ccccccchHHHHHHHHhh
Confidence 125555 55566665544432 4555655555542 112224555666666666
Q ss_pred ccCccccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCC-CHHHHHHHHHHHHHH
Q 003289 483 YVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST-SEDTAAAAALAFRHI 561 (833)
Q Consensus 483 ~~~~~~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~-~~~v~~~A~~al~~l 561 (833)
..+......+..+++.+.... ++.++..++|++|.|+..... .+ ..+.++..+...+.. +..++..+-.++.++
T Consensus 407 ~~~~~~~~~l~~L~~~l~~~~-~~~~~~~~~wilGEy~~~~~~-~~---~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl 481 (526)
T PF01602_consen 407 NNPELREKILKKLIELLEDIS-SPEALAAAIWILGEYGELIEN-TE---SAPDILRSLIENFIEESPEVKLQILTALAKL 481 (526)
T ss_dssp HSTTTHHHHHHHHHHHHTSSS-SHHHHHHHHHHHHHHCHHHTT-TT---HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred cChhhhHHHHHHHHHHHHHhh-HHHHHHHHHhhhcccCCcccc-cc---cHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 555444456778888777744 778999999999999998876 11 355556655544433 335999999999999
Q ss_pred HHHhhh-hhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHH
Q 003289 562 CDDCRK-KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALS 605 (833)
Q Consensus 562 ~~~~~~-~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~ 605 (833)
...... ...+ .+++.+.+.... + ..+.+.|.+..+-..
T Consensus 482 ~~~~~~~~~~~---~i~~~~~~~~~~-~--s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 482 FKRNPENEVQN---EILQFLLSLATE-D--SSDPEVRDRAREYLR 520 (526)
T ss_dssp HHHSCSTTHHH---HHHHHHHCHHHH-S---SSHHHHHHHHHHHH
T ss_pred HhhCCchhhHH---HHHHHHHHHhcc-C--CCCHHHHHHHHHHHH
Confidence 865442 2322 445555444431 0 134666666665544
No 31
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.30 E-value=0.4 Score=52.43 Aligned_cols=235 Identities=9% Similarity=0.010 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhH
Q 003289 549 DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVV 628 (833)
Q Consensus 549 ~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~ 628 (833)
++++.-+..+..+++..++.+-+.-+++++.+..++.+. -+.-....++.+|+.+..++ .+....|...+..-+.
T Consensus 571 elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~----~~t~~~~dV~~aIsal~~sl-~e~Fe~y~~~fiPyl~ 645 (858)
T COG5215 571 ELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILEST----KPTTAFGDVYTAISALSTSL-EERFEQYASKFIPYLT 645 (858)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhcc----CCchhhhHHHHHHHHHHHHH-HHHHHHHHhhhhHHHH
Confidence 477777888888888888889999999999999988753 12335577888998888776 2445566665433332
Q ss_pred HHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Q 003289 629 TPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRT 708 (833)
Q Consensus 629 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~ 708 (833)
..+ .... ..-...+++.++.+.+.++ ..+..+...+|..+.+.+++-..+.++.-++..+|+.+...
T Consensus 646 ~al----n~~d-------~~v~~~avglvgdlantl~--~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAla 712 (858)
T COG5215 646 RAL----NCTD-------RFVLNSAVGLVGDLANTLG--TDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALA 712 (858)
T ss_pred HHh----cchh-------HHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHH
Confidence 222 1110 0012235566666666654 34666777888889888887777788889999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhcCCccHhhhH---HHH----HHHh-cCCcchhHHHHHHHHHHHHHHHHhhccc-ccCC
Q 003289 709 SKRFMGITIGAILEEIQGLYQQHQQPCFLYLS---SEV----IKIF-GSDPSCASYLHNLIEALFKRTTCLLTSI-EEFT 779 (833)
Q Consensus 709 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~L~~~---~~l----i~~f-g~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~~~ 779 (833)
.|..+.+|+..++-++.+.-+..|++.=++.. ... ...| |-.....+.+..+++. +..+|..+... +++.
T Consensus 713 iga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Py-v~sif~~i~~iaeDp~ 791 (858)
T COG5215 713 IGANFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPY-VISIFHKIGMIAEDPN 791 (858)
T ss_pred HhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhH-HHHHHHHHHHhhcCCc
Confidence 99999999999998888777776765322221 111 1111 1000111122222222 22233333321 1222
Q ss_pred cCCchHHHHHHHHHHHHhhCCCc
Q 003289 780 SRPDVADDCFLLASRCIRYCPQL 802 (833)
Q Consensus 780 ~~pd~~~~~f~l~~~~~~~~p~~ 802 (833)
-.-+..++..+|+..+..-+|.-
T Consensus 792 ~se~~traalGLigDla~mfpkg 814 (858)
T COG5215 792 GSEAHTRAALGLIGDLAGMFPKG 814 (858)
T ss_pred cchhHHHHHHHHHHHHHHhCCCc
Confidence 22345688999999999988865
No 32
>PTZ00429 beta-adaptin; Provisional
Probab=96.48 E-value=2.9 Score=49.58 Aligned_cols=127 Identities=11% Similarity=0.086 Sum_probs=78.6
Q ss_pred cCCCHHHHHHHHHHHHHHhc-Chh-HHHHHHHHhcc-CCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHH
Q 003289 16 HHPDDAVRMQADRWLQDFQH-TID-AWQVADNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLK 92 (833)
Q Consensus 16 ~~~d~~~r~~A~~~L~~~q~-s~~-aw~~~~~LL~~-~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~ 92 (833)
.++|.+.|+=..-||..+-+ .|+ +-..+..+..+ .+.++.+|-.|..++-.... ..+-+.++..+.
T Consensus 78 ~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~-----------~~i~e~l~~~lk 146 (746)
T PTZ00429 78 PSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV-----------SSVLEYTLEPLR 146 (746)
T ss_pred CCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc-----------HHHHHHHHHHHH
Confidence 56688888889899887666 565 55556666654 23567788888887765321 123334444444
Q ss_pred Hh-cCCCHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC-CCCcHHHHHHHHhhchhh
Q 003289 93 KF-HKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS-HPEFVPGFLELLTVLPEE 154 (833)
Q Consensus 93 ~~-~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~-~~~~~~~~L~iL~~l~Ee 154 (833)
+. ...+++||++-+.+++.++...+ +.-++.++++.+.+.+.. ++......+..|..+.++
T Consensus 147 k~L~D~~pYVRKtAalai~Kly~~~p-elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 147 RAVADPDPYVRKTAAMGLGKLFHDDM-QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhhCc-ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 42 23568999998888888876544 222222256667666653 444556667777766553
No 33
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.33 E-value=1.2 Score=49.65 Aligned_cols=244 Identities=16% Similarity=0.103 Sum_probs=132.6
Q ss_pred CCcchhhHHHHHHHHhhcccCccccccHHHHHhhcc-CCCC-hHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHh
Q 003289 465 NEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KLPQ-QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTS 542 (833)
Q Consensus 465 ~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~-~l~~-~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~ 542 (833)
.+-..+|++++++.+....+.....+++..++..+. ++.+ .+.||.++...+-..-.-+..+. ...++|..+.-+..
T Consensus 187 ~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a-VK~llpsll~~l~~ 265 (569)
T KOG1242|consen 187 KSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA-VKLLLPSLLGSLLE 265 (569)
T ss_pred chhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch-hhHhhhhhHHHHHH
Confidence 455668899999988888777665666666665542 4432 46777777776665544443321 11355555544432
Q ss_pred ccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHH
Q 003289 543 GMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALE 621 (833)
Q Consensus 543 ~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~ 621 (833)
. . .-..++...+.-+.......+.-.++.++..+.+.+.. ...+.|..-++++-.+-+.+.+.++.+++-
T Consensus 266 ~----kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~D-----T~~evr~a~~~~l~~~~svidN~dI~~~ip 336 (569)
T KOG1242|consen 266 A----KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWD-----TKPEVRKAGIETLLKFGSVIDNPDIQKIIP 336 (569)
T ss_pred H----hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHcc-----CCHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 2 1 13445555555444444456667788888888777653 346777777777777666665544433222
Q ss_pred Hhhhhh---HHHHHHHHhcCCCc-----ccc-------------------cCchhhhHHHHHHHHhhhccCCcccHHHHH
Q 003289 622 MLCLPV---VTPLQEIINQGPEI-----LQK-------------------KHPRDLTVHIDRFAYIFRYVNHPEAVADAI 674 (833)
Q Consensus 622 ~l~~p~---~~~l~~~~~~~~~~-----~~~-------------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 674 (833)
.++.-+ ......++...... .+. ..-|..+..++.|... +..|..+.+++
T Consensus 337 ~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~L---veDp~~lapfl 413 (569)
T KOG1242|consen 337 TLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKL---VEDPKDLAPFL 413 (569)
T ss_pred HHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHh---hcCHHHHhhhH
Confidence 222111 10111111110000 000 0001111112222221 22355677788
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHH
Q 003289 675 QRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMG-ITIGAILEE 723 (833)
Q Consensus 675 ~~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~~~~~~~-~~l~~l~~~ 723 (833)
.+++|-+..++..- .+++++-+-+++...++.+|..-+ ..+|.+.+.
T Consensus 414 ~~Llp~lk~~~~d~--~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~ 461 (569)
T KOG1242|consen 414 PSLLPGLKENLDDA--VPEVRAVAARALGALLERLGEVSFDDLIPELSET 461 (569)
T ss_pred HHHhhHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHhhcccccccHHHHh
Confidence 88888888877553 789998888888887777776543 334444443
No 34
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.23 E-value=0.026 Score=47.87 Aligned_cols=75 Identities=12% Similarity=0.149 Sum_probs=58.2
Q ss_pred HHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcC
Q 003289 510 QTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNG 586 (833)
Q Consensus 510 ~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~ 586 (833)
+..+..+...+--+..+.. .+++.+++.++.++++++ .||..||.++.++++.++..+.++.+.+.+.+.++...
T Consensus 4 ~ggli~Laa~ai~l~~~~~--~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D 79 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKDIS--KYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSAD 79 (97)
T ss_pred hHHHHHHHHHHHHchHhHH--HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444444444444444322 488899999999998875 59999999999999999999999999999999888764
No 35
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.92 E-value=0.43 Score=48.92 Aligned_cols=236 Identities=13% Similarity=0.150 Sum_probs=129.8
Q ss_pred hHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHh
Q 003289 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAV 584 (833)
Q Consensus 505 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l 584 (833)
++.+|..++.+++..-.-+..+.=..+-...++.|+...+.+.. ....|..++..+. .++..-......+++.+.+-.
T Consensus 12 d~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-~~~~~l~gl~~L~-~~~~~~~~~~~~i~~~l~~~~ 89 (262)
T PF14500_consen 12 DPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-CVQPALKGLLALV-KMKNFSPESAVKILRSLFQNV 89 (262)
T ss_pred CHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-hHHHHHHHHHHHH-hCcCCChhhHHHHHHHHHHhC
Confidence 67788888777776655444321111246677788888887776 4555578888777 333322233555555554433
Q ss_pred cCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhcc
Q 003289 585 NGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYV 664 (833)
Q Consensus 585 ~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 664 (833)
.-+ .....+|..+++-+-.++..-. ..+..+-...+.++-+.++.+. .+|.+....+.+..+.+..
T Consensus 90 ~~q---~~~q~~R~~~~~ll~~l~~~~~-----~~l~~~~~~fv~~~i~~~~gEk------DPRnLl~~F~l~~~i~~~~ 155 (262)
T PF14500_consen 90 DVQ---SLPQSTRYAVYQLLDSLLENHR-----EALQSMGDDFVYGFIQLIDGEK------DPRNLLLSFKLLKVILQEF 155 (262)
T ss_pred Chh---hhhHHHHHHHHHHHHHHHHHhH-----HHHHhchhHHHHHHHHHhccCC------CHHHHHHHHHHHHHHHHhc
Confidence 221 3567789999998888876632 3334444555555555555433 3566666777777766665
Q ss_pred CCcccHHHHHHHHHHHHHHH----HHhhcCCh--HHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHHhhcCCccHh
Q 003289 665 NHPEAVADAIQRLWPIFKAI----FDIRAWDM--RTMESLCRACKYAVRTSKRFMGI-TIGAILEEIQGLYQQHQQPCFL 737 (833)
Q Consensus 665 ~~~~~~~~~~~~~~~~l~~i----l~~~~~~~--~v~e~~~~~~~~~~~~~~~~~~~-~l~~l~~~l~~~~~~~~~~~~L 737 (833)
.. .++.++++.++..= +...++|+ --.|..-..++.++.+ .+.+.| .+|.+++.+.+...... ...|
T Consensus 156 ~~----~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s-~~~fa~~~~p~LleKL~s~~~~~K-~D~L 229 (262)
T PF14500_consen 156 DI----SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSS-TPLFAPFAFPLLLEKLDSTSPSVK-LDSL 229 (262)
T ss_pred cc----chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC-cHhhHHHHHHHHHHHHcCCCcHHH-HHHH
Confidence 42 23334444433321 22233444 1234444555555543 333433 35666666544322211 3667
Q ss_pred hhHHHHHHHhcCCcchhHHHHHHHHH
Q 003289 738 YLSSEVIKIFGSDPSCASYLHNLIEA 763 (833)
Q Consensus 738 ~~~~~li~~fg~~~~~~~~~~~~~~~ 763 (833)
.++..++..||.+ .+.+....+...
T Consensus 230 ~tL~~c~~~y~~~-~~~~~~~~iw~~ 254 (262)
T PF14500_consen 230 QTLKACIENYGAD-SLSPHWSTIWNA 254 (262)
T ss_pred HHHHHHHHHCCHH-HHHHHHHHHHHH
Confidence 8888889999864 244454444443
No 36
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.91 E-value=0.68 Score=50.76 Aligned_cols=322 Identities=11% Similarity=0.115 Sum_probs=156.7
Q ss_pred chhhHHHHHHHHhhcccC-ccccccHHHHHhhcc-CC--CChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhc
Q 003289 468 RPAEAALFCIRAISTYVS-VVEAEVMPQVMALLP-KL--PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 543 (833)
Q Consensus 468 ~~~Eaal~~l~~i~e~~~-~~~~~~l~~l~~~l~-~l--~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~ 543 (833)
..+-||-+-+..+...+. .++.+.+.++++.+. .+ +.|.--|+.. ++|--+-=+.--++...|+..++.-++.+
T Consensus 15 ekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGg--LiGlAA~~iaLg~~~~~Y~~~iv~Pv~~c 92 (675)
T KOG0212|consen 15 EKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGG--LIGLAAVAIALGIKDAGYLEKIVPPVLNC 92 (675)
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccch--HHHHHHHHHHhccccHHHHHHhhHHHHHh
Confidence 334555555555554443 344566777777543 22 2221111111 11111111111122223677777777778
Q ss_pred cCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCC--------------------------------
Q 003289 544 MSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSL-------------------------------- 590 (833)
Q Consensus 544 l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~-------------------------------- 590 (833)
++++. .|+..||.+++++++-++..+.+|.+.+.+.+.++....+..
T Consensus 93 f~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL 172 (675)
T KOG0212|consen 93 FSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLL 172 (675)
T ss_pred ccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHH
Confidence 88875 599999999999999999999999999999988876532110
Q ss_pred -----CCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccC
Q 003289 591 -----KVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN 665 (833)
Q Consensus 591 -----~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 665 (833)
..++..|..+++=+- ++.+.|+=++-.|+..++..+++ .+..... ..+.+ .=.+++.+...+.
T Consensus 173 ~eriy~~n~~tR~flv~Wl~-~Lds~P~~~m~~yl~~~ldGLf~----~LsD~s~-----eVr~~--~~t~l~~fL~eI~ 240 (675)
T KOG0212|consen 173 RERIYVINPMTRQFLVSWLY-VLDSVPDLEMISYLPSLLDGLFN----MLSDSSD-----EVRTL--TDTLLSEFLAEIR 240 (675)
T ss_pred HHHHhcCCchHHHHHHHHHH-HHhcCCcHHHHhcchHHHHHHHH----HhcCCcH-----HHHHH--HHHHHHHHHHHHh
Confidence 001222333332221 22333333333333333333322 2221110 01111 1112333322221
Q ss_pred -CcccHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCCccHhhhHH---
Q 003289 666 -HPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSS--- 741 (833)
Q Consensus 666 -~~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~L~~~~--- 741 (833)
.|..+ -+.+..+++.. -....++.+...+..++...+...|+.+.++++.++..++.....++-.+. +...
T Consensus 241 s~P~s~--d~~~~i~vlv~--~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i-~~~a~~~ 315 (675)
T KOG0212|consen 241 SSPSSM--DYDDMINVLVP--HLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSI-KEYAQMV 315 (675)
T ss_pred cCcccc--Ccccchhhccc--cccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccH-HHHHHHH
Confidence 12111 01111122111 012345677777777777788888999999999888877665554433210 1111
Q ss_pred --HHHHHhcC---CcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCccCCcCCcHHHHHHH
Q 003289 742 --EVIKIFGS---DPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCS 816 (833)
Q Consensus 742 --~li~~fg~---~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~~ 816 (833)
.+...++. .+++ - +..++......+ ..+.-|..-+..+-+..+..+.|+.++- ...++|..-
T Consensus 316 n~~l~~l~s~~~~~~~i--d----~~~ii~vl~~~l-----~~~~~~tri~~L~Wi~~l~~~~p~ql~~--h~~~if~tL 382 (675)
T KOG0212|consen 316 NGLLLKLVSSERLKEEI--D----YGSIIEVLTKYL-----SDDREETRIAVLNWIILLYHKAPGQLLV--HNDSIFLTL 382 (675)
T ss_pred HHHHHHHHhhhhhcccc--c----hHHHHHHHHHHh-----hcchHHHHHHHHHHHHHHHhhCcchhhh--hccHHHHHH
Confidence 11222221 1110 0 111221111112 2455566777788888888888877754 445555555
Q ss_pred HHccc
Q 003289 817 MIGIT 821 (833)
Q Consensus 817 ~~~l~ 821 (833)
+..+.
T Consensus 383 L~tLs 387 (675)
T KOG0212|consen 383 LKTLS 387 (675)
T ss_pred HHhhc
Confidence 55554
No 37
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.90 E-value=2.8 Score=47.73 Aligned_cols=236 Identities=13% Similarity=0.161 Sum_probs=124.5
Q ss_pred CcchhhHHHHHHHHhhcccCccccccHHHHHhhcc-CCC-ChHHHHHHHHHHHHhchHHHhhCCCC-hhhH--HHHHHHH
Q 003289 466 EWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFDAASSD-PSIL--ASVLSIL 540 (833)
Q Consensus 466 ~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~-~l~-~~~~v~~t~~~~ig~y~~~l~~~p~~-~~~l--~~~l~~l 540 (833)
+-..++.++.++..+-+...... ..+++...+. .+. +++.||.-++..++++.+ +++. .+.+ ..++..+
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~--l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~----~~~~~~~~~~~~~l~~~i 124 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDS--LLPQYQPFLQRGLTHPSPKVRRLALKQLGRIAR----HSEGAAQLLVDNELLPLI 124 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc----CCHHHHHHhcCccHHHHH
Confidence 34567888888888777665432 2455555543 232 478999999999998753 1110 0001 3345556
Q ss_pred HhccCCCH-HHHHHHHHHHHHHHHHhhh--hh-hcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHH
Q 003289 541 TSGMSTSE-DTAAAAALAFRHICDDCRK--KL-CGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDA 616 (833)
Q Consensus 541 ~~~l~~~~-~v~~~A~~al~~l~~~~~~--~l-~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~ 616 (833)
..++.+++ .|...|+.++.+++..-.. .+ .+.. +..+.+++.. -+...|.++++.++.+.+.-+ +.
T Consensus 125 ~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~---~~~L~~l~~~-----~~~~vR~Rv~el~v~i~~~S~--~~ 194 (503)
T PF10508_consen 125 IQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNL---LSKLKSLMSQ-----SSDIVRCRVYELLVEIASHSP--EA 194 (503)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcch---HHHHHHHHhc-----cCHHHHHHHHHHHHHHHhcCH--HH
Confidence 66677764 5999999999999863211 11 1222 5666666543 235689999999988865532 22
Q ss_pred HHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHHH--HHHHHHHHHHHhhcCCh--
Q 003289 617 KKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQ--RLWPIFKAIFDIRAWDM-- 692 (833)
Q Consensus 617 ~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~--~~~~~l~~il~~~~~~~-- 692 (833)
..+... +.++..+.+.+... | ... ...+++.++.+.. .+|. ..++. .+.+.+..++.....|+
T Consensus 195 ~~~~~~--sgll~~ll~eL~~d----D-iLv--qlnalell~~La~---~~~g-~~yL~~~gi~~~L~~~l~~~~~dp~~ 261 (503)
T PF10508_consen 195 AEAVVN--SGLLDLLLKELDSD----D-ILV--QLNALELLSELAE---TPHG-LQYLEQQGIFDKLSNLLQDSEEDPRL 261 (503)
T ss_pred HHHHHh--ccHHHHHHHHhcCc----c-HHH--HHHHHHHHHHHHc---ChhH-HHHHHhCCHHHHHHHHHhccccCCcc
Confidence 232222 12443333333321 1 111 1235666666655 2333 23332 35555555554444444
Q ss_pred --HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Q 003289 693 --RTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQ 730 (833)
Q Consensus 693 --~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 730 (833)
-.+-....+++.+...-...+....|.+++.+...+..
T Consensus 262 ~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s 301 (503)
T PF10508_consen 262 SSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLES 301 (503)
T ss_pred cchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCC
Confidence 11223334555544421223344456666665544443
No 38
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=95.75 E-value=0.27 Score=54.30 Aligned_cols=248 Identities=15% Similarity=0.198 Sum_probs=131.3
Q ss_pred hHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhc----CcCCCCCCHhhHHHHHHHHHH
Q 003289 532 ILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN----GEGSLKVSAEDSLHLVEALSM 606 (833)
Q Consensus 532 ~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~----~~~~~~l~~~~~~~l~eai~~ 606 (833)
+...+++-++..+..+. .--...-++++|++..+++.+.|+...+++.+..++. +| -.+.=..+++|++|.
T Consensus 23 ~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNP----snP~FnHylFEsi~~ 98 (435)
T PF03378_consen 23 FAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNP----SNPRFNHYLFESIGA 98 (435)
T ss_dssp CHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS-------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCC----CCcchhhhHHHHHHH
Confidence 45666666665554321 0235667899999999999999998888887766654 32 234556899999999
Q ss_pred HHhcCChHH--HHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHH
Q 003289 607 VITELPQVD--AKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAI 684 (833)
Q Consensus 607 vi~~~~~~~--~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~i 684 (833)
++....... ....++..+-|+ +..++++... ..--+ .+..++.+.+... ..+..+.+.+++|.+..-
T Consensus 99 lir~~~~~~~~~v~~~E~~L~P~---f~~ILq~dV~-----EF~PY--vfQIla~Lle~~~-~~~~p~~y~~L~~~Ll~p 167 (435)
T PF03378_consen 99 LIRFVCEADPEAVSQFEEALFPP---FQEILQQDVQ-----EFIPY--VFQILAQLLELRP-SSPLPDAYKQLFPPLLSP 167 (435)
T ss_dssp HHHHS-GGGHH---HHHHHHHHH---HHHHHHTT-T-----TTHHH--HHHHHHHHHHHSS---S--TTTGGGHHHHTSG
T ss_pred HHHhccCCChhHHHHHHHHHHHH---HHHHHHHHHH-----HHHHH--HHHHHHHHHHcCC-CCCCcHHHHHHHHHHcCc
Confidence 998865432 223444444444 4566776532 12223 5677777777643 133444445555544332
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHHHhh-cCCccHhhhHHHHHHHhcCCcchhHHHHHHH
Q 003289 685 FDIRAWDMRTMESLCRACKYAVRTSKRFM--GITIGAILEEIQGLYQQ-HQQPCFLYLSSEVIKIFGSDPSCASYLHNLI 761 (833)
Q Consensus 685 l~~~~~~~~v~e~~~~~~~~~~~~~~~~~--~~~l~~l~~~l~~~~~~-~~~~~~L~~~~~li~~fg~~~~~~~~~~~~~ 761 (833)
..|..... +-++.++++..++.-..++ .+.+..++......... .......+++..++..+..+ .+.+++.+++
T Consensus 168 -~lWe~~gn-iPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~gF~LL~~iv~~~p~~-~l~~yl~~I~ 244 (435)
T PF03378_consen 168 -ALWERRGN-IPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDHYGFDLLESIVENLPPE-ALEPYLKQIF 244 (435)
T ss_dssp -GGGGSTTT-HHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHS-HH-HHGGGHHHHH
T ss_pred -chhccCCC-cCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHCCHH-HHHHHHHHHH
Confidence 23332222 2344444444443322222 13344444433332222 12245578999999987653 2455666666
Q ss_pred HHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHH-hhCCCccCC
Q 003289 762 EALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCI-RYCPQLFIP 805 (833)
Q Consensus 762 ~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~~-~~~p~~~~~ 805 (833)
..++++ |++ ..-+..++.+..|+.-+. ++.|..++.
T Consensus 245 ~lll~R----Lq~----skT~kf~~~fv~F~~~~~~~~g~~~li~ 281 (435)
T PF03378_consen 245 TLLLTR----LQS----SKTEKFVKRFVVFLSLFAIKYGPDFLIQ 281 (435)
T ss_dssp HHHHHH----HHH----C--HHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHH----Hhh----CCcHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 655544 332 222456777777766665 456666553
No 39
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.69 E-value=5.2 Score=45.54 Aligned_cols=222 Identities=14% Similarity=0.158 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC-CCCcHHHHHHHHhhchhhcccc
Q 003289 80 VRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS-HPEFVPGFLELLTVLPEEVFNY 158 (833)
Q Consensus 80 ~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~-~~~~~~~~L~iL~~l~Ee~~~~ 158 (833)
..-|-.-++.++.. .-++||.|-..++=.++.+.+..-=| -++-+.+.+.. +|..+.....++..|+----.
T Consensus 142 ARDLa~Dv~tLL~s---skpYvRKkAIl~lykvFLkYPeAlr~---~FprL~EkLeDpDp~V~SAAV~VICELArKnPk- 214 (877)
T KOG1059|consen 142 ARDLADDVFTLLNS---SKPYVRKKAILLLYKVFLKYPEALRP---CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQ- 214 (877)
T ss_pred hHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHhhhHhHhh---hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCc-
Confidence 34466667777665 56799999777777777765432222 35677777754 444455555555443221100
Q ss_pred cccCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhccCCCCccccccchhHHHHHhccCCcchHHH
Q 003289 159 KIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEA 238 (833)
Q Consensus 159 ~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~~~~L~~~~~~~~ 238 (833)
+ ...-+|..+.++.+.-++ =+..++++-|.+...+-+.+.. .+++.+.+.+.+-....-
T Consensus 215 n--------------yL~LAP~ffkllttSsNN-WmLIKiiKLF~aLtplEPRLgK------KLieplt~li~sT~AmSL 273 (877)
T KOG1059|consen 215 N--------------YLQLAPLFYKLLVTSSNN-WVLIKLLKLFAALTPLEPRLGK------KLIEPITELMESTVAMSL 273 (877)
T ss_pred c--------------cccccHHHHHHHhccCCC-eehHHHHHHHhhccccCchhhh------hhhhHHHHHHHhhHHHHH
Confidence 0 112235555555543211 1456777777766654322211 233333333332111111
Q ss_pred HHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHHHHcCCchhHHHH
Q 003289 239 SVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIV 318 (833)
Q Consensus 239 a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~l 318 (833)
--+|+..++...+. + +..+|...++..+..+- .-+..++.+--++. +-.+..++..++.. ++..-
T Consensus 274 lYECvNTVVa~s~s--~-g~~d~~asiqLCvqKLr---~fiedsDqNLKYlg--Llam~KI~ktHp~~-------Vqa~k 338 (877)
T KOG1059|consen 274 LYECVNTVVAVSMS--S-GMSDHSASIQLCVQKLR---IFIEDSDQNLKYLG--LLAMSKILKTHPKA-------VQAHK 338 (877)
T ss_pred HHHHHHHheeehhc--c-CCCCcHHHHHHHHHHHh---hhhhcCCccHHHHH--HHHHHHHhhhCHHH-------HHHhH
Confidence 22344444433221 1 22256666665554432 22222222222221 12334444444443 34557
Q ss_pred HHHHhhhcCCCcchhhhhHHHHHHHH
Q 003289 319 HALLEVASHPEYDIASMTFNFWHSLQ 344 (833)
Q Consensus 319 ~~ll~~~~~~~~~v~~~~l~fw~~l~ 344 (833)
+++++|++..|..|...+++..+.++
T Consensus 339 dlIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 339 DLILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHh
Confidence 88899999999999999999876654
No 40
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.62 E-value=5.5 Score=45.41 Aligned_cols=339 Identities=16% Similarity=0.127 Sum_probs=173.4
Q ss_pred hhHHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCc-----cccccHHHHHhhccCCC
Q 003289 429 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSV-----VEAEVMPQVMALLPKLP 503 (833)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~-----~~~~~l~~l~~~l~~l~ 503 (833)
+.+++..+.....++...+.+.+.+...+. .++-.-++.++..++.+++.-.. .+.+.++.++..+..
T Consensus 58 ~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~-----h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~-- 130 (503)
T PF10508_consen 58 ICDILKRLLSALSPDSLLPQYQPFLQRGLT-----HPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD-- 130 (503)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC--
Confidence 556777777666666666666666666553 33445677888887776654322 123455555555532
Q ss_pred ChHHHHHHHHHHHHhchHHHhhCCCChhhHHHH-----HHHHHhccCC-CHHHHHHHHHHHHHHHHHhhhhhhcCHH--H
Q 003289 504 QQPQLLQTVCLTIGAYSKWFDAASSDPSILASV-----LSILTSGMST-SEDTAAAAALAFRHICDDCRKKLCGYLD--G 575 (833)
Q Consensus 504 ~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~-----l~~l~~~l~~-~~~v~~~A~~al~~l~~~~~~~l~~~l~--~ 575 (833)
.+..|...++.++...++ ++. .+..+ +.-+...+.. .+.++.++...+.+++......+. ++. .
T Consensus 131 ~d~~Va~~A~~~L~~l~~----~~~---~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~-~~~~sg 202 (503)
T PF10508_consen 131 PDLSVAKAAIKALKKLAS----HPE---GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAE-AVVNSG 202 (503)
T ss_pred CcHHHHHHHHHHHHHHhC----Cch---hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHH-HHHhcc
Confidence 257888888888888764 222 22223 3444444555 334888888888888765544332 221 2
Q ss_pred HHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchh-h-hHH
Q 003289 576 LYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRD-L-TVH 653 (833)
Q Consensus 576 ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~-~-~~~ 653 (833)
+++.+...+.+. +.-.+..++|-++.+... ..-..|+.+ ..++..+-+.+.....++ .... + ...
T Consensus 203 ll~~ll~eL~~d-----DiLvqlnalell~~La~~---~~g~~yL~~--~gi~~~L~~~l~~~~~dp---~~~~~~l~g~ 269 (503)
T PF10508_consen 203 LLDLLLKELDSD-----DILVQLNALELLSELAET---PHGLQYLEQ--QGIFDKLSNLLQDSEEDP---RLSSLLLPGR 269 (503)
T ss_pred HHHHHHHHhcCc-----cHHHHHHHHHHHHHHHcC---hhHHHHHHh--CCHHHHHHHHHhccccCC---cccchhhhhH
Confidence 555555544431 123578888888877773 222355544 356677777776654322 0111 1 112
Q ss_pred HHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH-hhhhhh-----hhHHHHHHHHHHH
Q 003289 654 IDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRT-SKRFMG-----ITIGAILEEIQGL 727 (833)
Q Consensus 654 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~-~~~~~~-----~~l~~l~~~l~~~ 727 (833)
+.-.+.++.. .|..+...+..+...+...++ ..|+...+.+...++.+-.+ =|..+. +-+..++..+...
T Consensus 270 ~~f~g~la~~--~~~~v~~~~p~~~~~l~~~~~--s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~ 345 (503)
T PF10508_consen 270 MKFFGNLARV--SPQEVLELYPAFLERLFSMLE--SQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDA 345 (503)
T ss_pred HHHHHHHHhc--ChHHHHHHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 2223333222 232233333333333332222 46777778777777764433 233222 1122223332222
Q ss_pred HhhcCC---ccHhhhHHHHHHHhcCCcc---hhHHHHHHHHHHHHHHHH-hhcccccCCcCCchHHHHHHHHHHHHhhCC
Q 003289 728 YQQHQQ---PCFLYLSSEVIKIFGSDPS---CASYLHNLIEALFKRTTC-LLTSIEEFTSRPDVADDCFLLASRCIRYCP 800 (833)
Q Consensus 728 ~~~~~~---~~~L~~~~~li~~fg~~~~---~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~pd~~~~~f~l~~~~~~~~p 800 (833)
....+. ...|..++.++... .++. +.......|..+.+.... ++.+. -..-.||+..+.|+++..+..+-|
T Consensus 346 ~~~~~~~lk~r~l~al~~il~~~-~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~-~~qPF~elr~a~~~~l~~l~~~~W 423 (503)
T PF10508_consen 346 IKSGSTELKLRALHALASILTSG-TDRQDNDILSITESWYESLSGSPLSNLLMSL-LKQPFPELRCAAYRLLQALAAQPW 423 (503)
T ss_pred hcCCchHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhcCCchHHHHHHH-hcCCchHHHHHHHHHHHHHhcCHH
Confidence 222221 24566666666432 2211 222333344433322222 22110 013348999999999998887655
Q ss_pred C
Q 003289 801 Q 801 (833)
Q Consensus 801 ~ 801 (833)
.
T Consensus 424 g 424 (503)
T PF10508_consen 424 G 424 (503)
T ss_pred H
Confidence 3
No 41
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=95.23 E-value=5.5 Score=45.93 Aligned_cols=197 Identities=11% Similarity=0.161 Sum_probs=109.1
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCccccc-cHHHHHhhccCCCChHHHH
Q 003289 431 DVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAE-VMPQVMALLPKLPQQPQLL 509 (833)
Q Consensus 431 d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~~~~-~l~~l~~~l~~l~~~~~v~ 509 (833)
-.++.++.+.. ..+.+.+...+...+. +.+|.-+-.|+.++..+....+..-.. +++.+.+.+. ..++.|+
T Consensus 98 lAL~~l~~i~~-~~~~~~l~~~v~~ll~-----~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~--d~~~~V~ 169 (526)
T PF01602_consen 98 LALRTLSNIRT-PEMAEPLIPDVIKLLS-----DPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLS--DKDPSVV 169 (526)
T ss_dssp HHHHHHHHH-S-HHHHHHHHHHHHHHHH-----SSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTT--HSSHHHH
T ss_pred HHHhhhhhhcc-cchhhHHHHHHHHHhc-----CCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhcc--CCcchhH
Confidence 35555555555 4577777777776654 456777888888888888775543222 4555555552 2368888
Q ss_pred HHHHHHHHhchHHHhhCCCC-hhhHHHHHHHHHhccCCCHH-HHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCc
Q 003289 510 QTVCLTIGAYSKWFDAASSD-PSILASVLSILTSGMSTSED-TAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGE 587 (833)
Q Consensus 510 ~t~~~~ig~y~~~l~~~p~~-~~~l~~~l~~l~~~l~~~~~-v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~ 587 (833)
.+++.++... ..+|.. ..+++.++..+.+.+..+.+ ++..+...+.+++......-.. ..+++.+...+.
T Consensus 170 ~~a~~~l~~i----~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~-- 241 (526)
T PF01602_consen 170 SAALSLLSEI----KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQ-- 241 (526)
T ss_dssp HHHHHHHHHH----HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHH--
T ss_pred HHHHHHHHHH----ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhh--
Confidence 8888888876 111110 02677777777665555432 6666666666665322211100 345555555543
Q ss_pred CCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhc
Q 003289 588 GSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRY 663 (833)
Q Consensus 588 ~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 663 (833)
.....-+++++..++.-.+... ++...++.+...+..... +.+ ..+++.+..+.+.
T Consensus 242 ------s~~~~V~~e~~~~i~~l~~~~~-------~~~~~~~~L~~lL~s~~~-----nvr--~~~L~~L~~l~~~ 297 (526)
T PF01602_consen 242 ------SSSPSVVYEAIRLIIKLSPSPE-------LLQKAINPLIKLLSSSDP-----NVR--YIALDSLSQLAQS 297 (526)
T ss_dssp ------HHHHHHHHHHHHHHHHHSSSHH-------HHHHHHHHHHHHHTSSSH-----HHH--HHHHHHHHHHCCH
T ss_pred ------ccccHHHHHHHHHHHHhhcchH-------HHHhhHHHHHHHhhcccc-----hhe--hhHHHHHHHhhcc
Confidence 2234556777777765544333 333334444555552211 122 2356666666554
No 42
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=95.15 E-value=0.26 Score=42.54 Aligned_cols=92 Identities=11% Similarity=0.153 Sum_probs=73.4
Q ss_pred HHHHHHHHHhccCCCH-----HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHH
Q 003289 533 LASVLSILTSGMSTSE-----DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (833)
Q Consensus 533 l~~~l~~l~~~l~~~~-----~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~v 607 (833)
+-.+++.+...+++++ .-+.++-.|+..+.+-+++++.+..++++..++..+.. ++=+...+++-...
T Consensus 9 ~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~-------~eL~~~al~~W~~~ 81 (107)
T smart00802 9 FLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI-------PELRSLALRCWHVL 81 (107)
T ss_pred HHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-------hhHHHHHHHHHHHH
Confidence 4455666666665543 35889999999999999999999999999999988864 34678899999999
Q ss_pred HhcCChHHHHHHHHHhhhhhHHHH
Q 003289 608 ITELPQVDAKKALEMLCLPVVTPL 631 (833)
Q Consensus 608 i~~~~~~~~~~~l~~l~~p~~~~l 631 (833)
+..+++++..+.+++.+.-+.+.|
T Consensus 82 i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 82 IKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHhc
Confidence 999998888887777777666554
No 43
>PTZ00429 beta-adaptin; Provisional
Probab=95.04 E-value=10 Score=45.04 Aligned_cols=100 Identities=12% Similarity=0.196 Sum_probs=56.2
Q ss_pred CCCcchhhHHHHHHHHhhcccCccccccHHHHHhhc-cCCC-ChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHH----
Q 003289 464 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALL-PKLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVL---- 537 (833)
Q Consensus 464 ~~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l-~~l~-~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l---- 537 (833)
...|.++ +.+..+....+.+..+ ...++..+ +.+. .++.|...++.++-.+.... +|+ .+..++
T Consensus 231 ~~EW~Qi----~IL~lL~~y~P~~~~e-~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~--~~~---~~~~~~~rl~ 300 (746)
T PTZ00429 231 CNEWGQL----YILELLAAQRPSDKES-AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC--SQE---LIERCTVRVN 300 (746)
T ss_pred CChHHHH----HHHHHHHhcCCCCcHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC--CHH---HHHHHHHHHH
Confidence 4689765 5666666655443322 33444433 2332 36889999999888776543 122 333333
Q ss_pred HHHHhccC-CCHHHHHHHHHHHHHHHHHhhhhhhcCHH
Q 003289 538 SILTSGMS-TSEDTAAAAALAFRHICDDCRKKLCGYLD 574 (833)
Q Consensus 538 ~~l~~~l~-~~~~v~~~A~~al~~l~~~~~~~l~~~l~ 574 (833)
.-++.-.+ .++ ++-.+...+..++...+..+.+++.
T Consensus 301 ~pLv~L~ss~~e-iqyvaLr~I~~i~~~~P~lf~~~~~ 337 (746)
T PTZ00429 301 TALLTLSRRDAE-TQYIVCKNIHALLVIFPNLLRTNLD 337 (746)
T ss_pred HHHHHhhCCCcc-HHHHHHHHHHHHHHHCHHHHHHHHH
Confidence 22222223 345 8888888888888766655555443
No 44
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.93 E-value=9.6 Score=44.10 Aligned_cols=95 Identities=21% Similarity=0.202 Sum_probs=53.2
Q ss_pred hHHHHHHHHhhcccCccccccHHHHHhhcc-C--C-CChHHHHHHHHHHHHhchHHHhhC-----CCC--hhhHHHHH-H
Q 003289 471 EAALFCIRAISTYVSVVEAEVMPQVMALLP-K--L-PQQPQLLQTVCLTIGAYSKWFDAA-----SSD--PSILASVL-S 538 (833)
Q Consensus 471 Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~-~--l-~~~~~v~~t~~~~ig~y~~~l~~~-----p~~--~~~l~~~l-~ 538 (833)
++.=-.+.-|++.+.+........+...+. . + -+.+.+.+.+.|+||.|++++... |.. ...+-.++ .
T Consensus 441 dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~ 520 (866)
T KOG1062|consen 441 DVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEK 520 (866)
T ss_pred hhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHH
Confidence 333344555666665544433444444432 1 1 125667889999999999988763 110 11222233 3
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhh
Q 003289 539 ILTSGMSTSEDTAAAAALAFRHICDDCR 566 (833)
Q Consensus 539 ~l~~~l~~~~~v~~~A~~al~~l~~~~~ 566 (833)
.+.....+. .++..|-.|+.++.....
T Consensus 521 v~~~~~s~~-~tk~yal~Al~KLSsr~~ 547 (866)
T KOG1062|consen 521 VLMSHSSDS-TTKGYALTALLKLSSRFH 547 (866)
T ss_pred HHHhccchH-HHHHHHHHHHHHHHhhcc
Confidence 333333333 488899999999876533
No 45
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.81 E-value=8.3 Score=42.83 Aligned_cols=196 Identities=16% Similarity=0.176 Sum_probs=107.6
Q ss_pred CCcchhhHHHHHHHHhhcccCccc--cccHHHHHhhccCCCChHHHHHHHHHHHHhchH--HHhhCCCChhhHHHHHHHH
Q 003289 465 NEWRPAEAALFCIRAISTYVSVVE--AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSK--WFDAASSDPSILASVLSIL 540 (833)
Q Consensus 465 ~~w~~~Eaal~~l~~i~e~~~~~~--~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~--~l~~~p~~~~~l~~~l~~l 540 (833)
.++..+-+++.+++.+......++ ++.+..+...+.. ...+..+..+++++.-..+ -+..||. -...+..+
T Consensus 202 ~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~Wi~KaLv~R~~~~----~~~~~~~L 276 (415)
T PF12460_consen 202 EDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISS-SEDSELRPQALEILIWITKALVMRGHPL----ATELLDKL 276 (415)
T ss_pred CChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcc-cCCcchhHHHHHHHHHHHHHHHHcCCch----HHHHHHHH
Confidence 346678899999999998865543 2333333333311 1122333333333332222 3344663 45556666
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHhhhhhh--------c-CHHHHHHHH-HHHhcCcCCCCCCHhhHHHHHHHHHHHHhc
Q 003289 541 TSGMSTSEDTAAAAALAFRHICDDCRKKLC--------G-YLDGLYNVY-RTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (833)
Q Consensus 541 ~~~l~~~~~v~~~A~~al~~l~~~~~~~l~--------~-~l~~ll~~l-~~~l~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (833)
+..+++++ +...||++|.-+..+....+. + |-.-+...+ ..++++.. ..+.+.+.....|+++++..
T Consensus 277 ~~lL~~~~-~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~--~~~~~~k~~yL~ALs~ll~~ 353 (415)
T PF12460_consen 277 LELLSSPE-LGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFK--EADDEIKSNYLTALSHLLKN 353 (415)
T ss_pred HHHhCChh-hHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHh--hcChhhHHHHHHHHHHHHhh
Confidence 66677877 999999999999877444332 1 222222222 22222110 12234678888899999999
Q ss_pred CChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHHHHHHHHH
Q 003289 611 LPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIF 681 (833)
Q Consensus 611 ~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l 681 (833)
+|..-..+.+..++.-+++.+ ...+ ..-....++++..+.+.- |+-+.+.++.+.|.+
T Consensus 354 vP~~vl~~~l~~LlPLLlqsL----~~~~-------~~v~~s~L~tL~~~l~~~--~~~i~~hl~sLI~~L 411 (415)
T PF12460_consen 354 VPKSVLLPELPTLLPLLLQSL----SLPD-------ADVLLSSLETLKMILEEA--PELISEHLSSLIPRL 411 (415)
T ss_pred CCHHHHHHHHHHHHHHHHHHh----CCCC-------HHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHH
Confidence 997777777777665555544 2211 112234666666665542 333344444444443
No 46
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.78 E-value=0.35 Score=48.78 Aligned_cols=137 Identities=14% Similarity=0.222 Sum_probs=83.9
Q ss_pred CCCcchhhHHHHHHHHhhccc-Ccccccc----HHHHHhhc-cCCCC-hHHHHHHHHHHHHhchHHHhhCCCChhhHHHH
Q 003289 464 HNEWRPAEAALFCIRAISTYV-SVVEAEV----MPQVMALL-PKLPQ-QPQLLQTVCLTIGAYSKWFDAASSDPSILASV 536 (833)
Q Consensus 464 ~~~w~~~Eaal~~l~~i~e~~-~~~~~~~----l~~l~~~l-~~l~~-~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~ 536 (833)
+.+|..+..++--+..+..+- .....+. +.+++..+ ..+.+ ...|.+++|.+++.++..+..+-+ .+.+.+
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~--~~~~~~ 95 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFE--PYADIL 95 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGH--HHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHH--HHHHHH
Confidence 678999999999888887665 2221111 22222222 23332 467999999999999998887632 478888
Q ss_pred HHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHH-HHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCC
Q 003289 537 LSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGL-YNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 612 (833)
Q Consensus 537 l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~l-l~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~ 612 (833)
++.++..+.++. .++..|..++..+++.|. +.+.+ ...+...... -+...|..+.+.+..++...+
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~-----Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKS-----KNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT------S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHcc
Confidence 888888777764 488999999999998776 11122 3444443332 347789999999999999987
No 47
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.54 E-value=0.095 Score=44.45 Aligned_cols=89 Identities=10% Similarity=0.125 Sum_probs=67.1
Q ss_pred hhHHHHHHHHhhcccCccccccHHHHHhhcc-CCC-ChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCC
Q 003289 470 AEAALFCIRAISTYVSVVEAEVMPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS 547 (833)
Q Consensus 470 ~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~-~l~-~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~ 547 (833)
+-+++.++++++..+...-.++++.|++.+. .+. ++++||..+|+.+...++..... ...+++.++..+.+.+.++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~--~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE--ILPYFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCC
Confidence 5689999999999998776778888887654 454 48999999999999999877643 2236788888888888887
Q ss_pred H-HHHHHHHHHHHHH
Q 003289 548 E-DTAAAAALAFRHI 561 (833)
Q Consensus 548 ~-~v~~~A~~al~~l 561 (833)
+ .|+..| ..+.++
T Consensus 81 d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAA-ELLDRL 94 (97)
T ss_pred chhHHHHH-HHHHHH
Confidence 5 366555 444444
No 48
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.42 E-value=12 Score=42.90 Aligned_cols=337 Identities=12% Similarity=0.068 Sum_probs=165.3
Q ss_pred hhHHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhccC-CC-ChH
Q 003289 429 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-LP-QQP 506 (833)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~~-l~-~~~ 506 (833)
.+..+.-+++.+|...++.++ ... +. +-.+|+-+..++-++..|+.-..-.--+++..+++.+.. +. .+.
T Consensus 496 tarafavvasalgip~llpfL----kav-c~---SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~q 567 (1172)
T KOG0213|consen 496 TARAFAVVASALGIPALLPFL----KAV-CG---SKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQ 567 (1172)
T ss_pred HHHHHHHHHHHhCcHHHHHHH----HHH-hc---cccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccch
Confidence 444555556667755544432 222 21 135899999999999998876543222456666666653 33 367
Q ss_pred HHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCH-HHHHHHHHHHh
Q 003289 507 QLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYL-DGLYNVYRTAV 584 (833)
Q Consensus 507 ~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l-~~ll~~l~~~l 584 (833)
.||-.+...++..++-.. |...+.+..+|.-|-+++..+. +.-.+--+|+..+|-..+.+-..|. ..+|-++..-+
T Consensus 568 kVR~itAlalsalaeaa~--Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf 645 (1172)
T KOG0213|consen 568 KVRTITALALSALAEAAT--PYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREF 645 (1172)
T ss_pred hhhhHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhh
Confidence 888888888877765333 4333567788877777775543 2444445666666665555555433 23444443333
Q ss_pred cCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHH-HHHHHhcCCCcccccCchhhhH----------H
Q 003289 585 NGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTP-LQEIINQGPEILQKKHPRDLTV----------H 653 (833)
Q Consensus 585 ~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~-l~~~~~~~~~~~~~~~~~~~~~----------~ 653 (833)
+.|+. .+ -..-..+++-++..-+. +....+.+ .+..++.. |..-+.- +..+.+.+.. .
T Consensus 646 ~sPDe-em-kkivLKVv~qcc~t~Gv---~~~y~r~d-ilp~ff~~fw~rrmA~-----drr~ykqlv~ttv~ia~KvG~ 714 (1172)
T KOG0213|consen 646 GSPDE-EM-KKIVLKVVKQCCATDGV---EPAYIRFD-ILPEFFFSFWGRRMAL-----DRRNYKQLVDTTVEIAAKVGS 714 (1172)
T ss_pred CCChH-HH-HHHHHHHHHHHhcccCC---CHHHHhhh-hhHHHHhhhhhhhhhc-----cccchhhHHHHHHHHHHHhCc
Confidence 33210 00 11224444444433332 22222222 23333333 2222221 1111222211 1
Q ss_pred HHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHhhcC---Ch----HHHHHHHHHHH--------------HHHHHhhhh
Q 003289 654 IDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAW---DM----RTMESLCRACK--------------YAVRTSKRF 712 (833)
Q Consensus 654 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~---~~----~v~e~~~~~~~--------------~~~~~~~~~ 712 (833)
-..++.++..++. ...++-+..+..+..++...+. |. .+++.+|.+|. .....+|.-
T Consensus 715 ~~~v~R~v~~lkd--e~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r 792 (1172)
T KOG0213|consen 715 DPIVSRVVLDLKD--EPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGR 792 (1172)
T ss_pred hHHHHHHhhhhcc--ccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhc
Confidence 1112222222211 1223445566666666665432 22 33344555544 223345666
Q ss_pred hhhhHHHHHHHHHHHHhhcCCc---cHhhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHH
Q 003289 713 MGITIGAILEEIQGLYQQHQQP---CFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCF 789 (833)
Q Consensus 713 ~~~~l~~l~~~l~~~~~~~~~~---~~L~~~~~li~~fg~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~pd~~~~~f 789 (833)
+.|++|+++..++-..+..+.. -..++.+.++...+.-.+ ..++..+.......| -.++|++.-+.+
T Consensus 793 ~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~e-----e~~m~~lGvvLyEyl-----geeypEvLgsIL 862 (1172)
T KOG0213|consen 793 VKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGE-----EKLMGHLGVVLYEYL-----GEEYPEVLGSIL 862 (1172)
T ss_pred cccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccH-----HHHHHHhhHHHHHhc-----CcccHHHHHHHH
Confidence 7899999988777666553321 224444544444333211 011222111111222 367888877777
Q ss_pred HHHHHHHhh
Q 003289 790 LLASRCIRY 798 (833)
Q Consensus 790 ~l~~~~~~~ 798 (833)
+-+..+++.
T Consensus 863 gAikaI~nv 871 (1172)
T KOG0213|consen 863 GAIKAIVNV 871 (1172)
T ss_pred HHHHHHHHh
Confidence 766666653
No 49
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.32 E-value=15 Score=43.67 Aligned_cols=126 Identities=12% Similarity=0.134 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHHHhchHHHhhCCCChhhHHHH-HHHHHhccCCCH-HHHHHHHHHHHHHHH-HhhhhhhcCHHHHHHHHH
Q 003289 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASV-LSILTSGMSTSE-DTAAAAALAFRHICD-DCRKKLCGYLDGLYNVYR 581 (833)
Q Consensus 505 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~-l~~l~~~l~~~~-~v~~~A~~al~~l~~-~~~~~l~~~l~~ll~~l~ 581 (833)
+++-...++.++|+.++.+.....+..-+... ++.++..+..|- -++++||.-+..+|+ +.+.. ..+...++...
T Consensus 431 ~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~--~~l~~ale~t~ 508 (1010)
T KOG1991|consen 431 NPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDP--NNLSEALELTH 508 (1010)
T ss_pred ChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCCh--HHHHHHHHHHH
Confidence 68999999999999999887653211122222 244455555553 489999999999983 33321 12333344434
Q ss_pred HHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcC
Q 003289 582 TAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQG 638 (833)
Q Consensus 582 ~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~ 638 (833)
+.+.+ +..++ .+....-|+-..|+..+ ...+++...+.|+++.+-.+.+.-
T Consensus 509 ~~l~~--d~~lP--V~VeAalALq~fI~~~~--~~~e~~~~hvp~~mq~lL~L~ne~ 559 (1010)
T KOG1991|consen 509 NCLLN--DNELP--VRVEAALALQSFISNQE--QADEKVSAHVPPIMQELLKLSNEV 559 (1010)
T ss_pred HHhcc--CCcCc--hhhHHHHHHHHHHhcch--hhhhhHhhhhhHHHHHHHHHHHhc
Confidence 43332 11232 56666667777777743 334678888888888887776643
No 50
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=94.13 E-value=0.68 Score=40.18 Aligned_cols=92 Identities=9% Similarity=0.072 Sum_probs=72.1
Q ss_pred HHHHHHHHHhccCC-----CHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHH
Q 003289 533 LASVLSILTSGMST-----SEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (833)
Q Consensus 533 l~~~l~~l~~~l~~-----~~~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~v 607 (833)
+-.+++.+-..+++ +..-+.+|-+++..+++-+++++.+..++++..++..+.. ++-+...+++-...
T Consensus 9 ~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~-------~~l~~~al~~W~~f 81 (107)
T PF08064_consen 9 ILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI-------PELREEALSCWNCF 81 (107)
T ss_pred HHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC-------hhhHHHHHHHHHHH
Confidence 34444544444443 2247899999999999999999999999999999998764 25678889999999
Q ss_pred HhcCChHHHHHHHHHhhhhhHHHH
Q 003289 608 ITELPQVDAKKALEMLCLPVVTPL 631 (833)
Q Consensus 608 i~~~~~~~~~~~l~~l~~p~~~~l 631 (833)
+..+++++..+.+.+.+..+++.|
T Consensus 82 i~~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 82 IKTLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHhc
Confidence 999999888888888777776554
No 51
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.00 E-value=0.058 Score=40.41 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHH
Q 003289 506 PQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHI 561 (833)
Q Consensus 506 ~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l 561 (833)
|.+|..+++.||+.+.-....- ..+++.+++.+...+.+++ .|+..|+.|+.++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~--~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELL--QPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHH--HHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHH--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5799999999998553111110 1378899999998887653 5999999998764
No 52
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.97 E-value=12 Score=41.43 Aligned_cols=216 Identities=9% Similarity=0.099 Sum_probs=123.3
Q ss_pred ccHHHHHhhccC-CC-ChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhh
Q 003289 490 EVMPQVMALLPK-LP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCR 566 (833)
Q Consensus 490 ~~l~~l~~~l~~-l~-~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~ 566 (833)
.+++.+++.+.+ +. +++.||.-+=.+++.|-.=+.+.|... -.+.+++.+...++.++ ..+..|-.=+..|+.-.+
T Consensus 204 ~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~-d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g 282 (675)
T KOG0212|consen 204 SYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM-DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG 282 (675)
T ss_pred hcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc-CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCC
Confidence 355666655543 33 367888777778888887788888732 34666777776666553 388888888999999989
Q ss_pred hhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccC
Q 003289 567 KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKH 646 (833)
Q Consensus 567 ~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~ 646 (833)
..+.++++.++..+.+.+...+ .++. +.....--+.+..-++.+..+.-+. +.++++-+.+.+....
T Consensus 283 ~~~l~~~s~il~~iLpc~s~~e--~~~i--~~~a~~~n~~l~~l~s~~~~~~~id--~~~ii~vl~~~l~~~~------- 349 (675)
T KOG0212|consen 283 RDLLLYLSGILTAILPCLSDTE--EMSI--KEYAQMVNGLLLKLVSSERLKEEID--YGSIIEVLTKYLSDDR------- 349 (675)
T ss_pred cchhhhhhhhhhhcccCCCCCc--cccH--HHHHHHHHHHHHHHHhhhhhccccc--hHHHHHHHHHHhhcch-------
Confidence 9999999999999888776421 2222 1111111112222222222221111 3355555555554322
Q ss_pred chhhhHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHH
Q 003289 647 PRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTS-KRFMGITIGAILEE 723 (833)
Q Consensus 647 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~~-~~~~~~~l~~l~~~ 723 (833)
....+-+++-+..+++.. |+........+++.+...+. ..+.+|+.....++..+...- .+...+|+-.+++.
T Consensus 350 ~~tri~~L~Wi~~l~~~~--p~ql~~h~~~if~tLL~tLs--d~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~ 423 (675)
T KOG0212|consen 350 EETRIAVLNWIILLYHKA--PGQLLVHNDSIFLTLLKTLS--DRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEM 423 (675)
T ss_pred HHHHHHHHHHHHHHHhhC--cchhhhhccHHHHHHHHhhc--CchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHH
Confidence 112233566666666643 44444444555555544333 345688888878777766542 22334444444443
No 53
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=93.41 E-value=7.9 Score=43.22 Aligned_cols=307 Identities=13% Similarity=0.138 Sum_probs=157.8
Q ss_pred HhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhhcccccCCccchhhhhhhchhHHHHHHHhhc---ChhHHHHH
Q 003289 372 VFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVL---GGDATLKI 448 (833)
Q Consensus 372 ~~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l---~~~~~l~~ 448 (833)
..+|+++.+++.++.++.-|+.. .|.. .+|+...+..++ |....+..
T Consensus 597 r~kp~l~~ivStiL~~L~~k~p~-------------vR~~-----------------aadl~~sl~~vlk~c~e~~~l~k 646 (975)
T COG5181 597 RGKPHLSMIVSTILKLLRSKPPD-------------VRIR-----------------AADLMGSLAKVLKACGETKELAK 646 (975)
T ss_pred ccCcchHHHHHHHHHHhcCCCcc-------------HHHH-----------------HHHHHHHHHHHHHhcchHHHHHH
Confidence 45788889999998888776521 2333 556655555443 44556666
Q ss_pred HHHHHHHhHhhcCCCCCCcc-hhhHHHHHHHHhhcccCcc-ccccHHHHHhhcc-CCC-ChHHHHHHHHHHHHhchHHHh
Q 003289 449 LYIKFVEGVACCGNKHNEWR-PAEAALFCIRAISTYVSVV-EAEVMPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFD 524 (833)
Q Consensus 449 l~~~l~~~~~~~~~~~~~w~-~~Eaal~~l~~i~e~~~~~-~~~~l~~l~~~l~-~l~-~~~~v~~t~~~~ig~y~~~l~ 524 (833)
+...|-+.+ +...+ .+=+.+-++.+|-...... ..+-+.+++..+. -+. -|..|..+++.++|..+.
T Consensus 647 lg~iLyE~l------ge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~--- 717 (975)
T COG5181 647 LGNILYENL------GEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICM--- 717 (975)
T ss_pred HhHHHHHhc------CcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHh---
Confidence 666666654 22232 2334444555554443322 2233444444332 222 288999999999998774
Q ss_pred hCCCC---hhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHH
Q 003289 525 AASSD---PSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLV 601 (833)
Q Consensus 525 ~~p~~---~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~ 601 (833)
..|++ .+++.-.+..+=.--...++.+..|..+|.-+.+...++ .++..+.+.+. ..+-+.++.
T Consensus 718 ~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq------dvL~~LlnnLk-------vqeRq~Rvc 784 (975)
T COG5181 718 NSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ------DVLDILLNNLK-------VQERQQRVC 784 (975)
T ss_pred cCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH------HHHHHHHhcch-------HHHHHhhhh
Confidence 22332 145555554432212233348888888888776654331 23444433222 133445555
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHHHHHHHHH
Q 003289 602 EALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIF 681 (833)
Q Consensus 602 eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l 681 (833)
.++|.-|-+ ..+.|. +-+-.++.... .++ ..--...++.|+..|.... +....+.-.+.|++
T Consensus 785 tsvaI~iVa-----------e~cgpf-sVlP~lm~dY~-TPe---~nVQnGvLkam~fmFeyig--~~s~dYvy~itPll 846 (975)
T COG5181 785 TSVAISIVA-----------EYCGPF-SVLPTLMSDYE-TPE---ANVQNGVLKAMCFMFEYIG--QASLDYVYSITPLL 846 (975)
T ss_pred hhhhhhhhH-----------hhcCch-hhHHHHHhccc-Cch---hHHHHhHHHHHHHHHHHHH--HHHHHHHHHhhHHH
Confidence 555532222 112221 01111122111 011 1111235777887777653 34566777888888
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHH-HhhhhhhhhHHHHHHHHHH-HHhhcCC--ccHhhhHHHHHHHhcCC
Q 003289 682 KAIFDIRAWDMRTMESLCRACKYAVR-TSKRFMGITIGAILEEIQG-LYQQHQQ--PCFLYLSSEVIKIFGSD 750 (833)
Q Consensus 682 ~~il~~~~~~~~v~e~~~~~~~~~~~-~~~~~~~~~l~~l~~~l~~-~~~~~~~--~~~L~~~~~li~~fg~~ 750 (833)
+..++. .|+.-+.-+..+++|..- +.|.......-.+++++.. .++..|+ .++...+..+....|..
T Consensus 847 eDAltD--rD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g 917 (975)
T COG5181 847 EDALTD--RDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSG 917 (975)
T ss_pred Hhhhcc--cchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccH
Confidence 887753 345555666777777543 3343322223334444332 2444554 35566666666666654
No 54
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=93.33 E-value=3.6 Score=41.38 Aligned_cols=156 Identities=12% Similarity=0.078 Sum_probs=86.0
Q ss_pred HHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcC
Q 003289 533 LASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 611 (833)
Q Consensus 533 l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~ 611 (833)
+..++..+...+.+.+ .|...|+..+..++..++.++.|+++.++..+.+.+..+ ...-+....+++..++...
T Consensus 51 l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~-----~~~i~~~a~~~L~~i~~~~ 125 (228)
T PF12348_consen 51 LRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDS-----KKFIREAANNALDAIIESC 125 (228)
T ss_dssp HH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG--------HHHHHHHHHHHHHHHTTS
T ss_pred HHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccc-----cHHHHHHHHHHHHHHHHHC
Confidence 3344455666665533 489999999999999999999999999999888876532 2346677777887777776
Q ss_pred C-hHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCC-cccH--HHHHHHHHHHHHHHHHh
Q 003289 612 P-QVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH-PEAV--ADAIQRLWPIFKAIFDI 687 (833)
Q Consensus 612 ~-~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~--~~~~~~~~~~l~~il~~ 687 (833)
+ .. .++.+. +....... ++.-....+..+..++...+. .... ...+.++.+.+...+.
T Consensus 126 ~~~~-------~~~~~~---l~~~~~~K-------n~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~- 187 (228)
T PF12348_consen 126 SYSP-------KILLEI---LSQGLKSK-------NPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLS- 187 (228)
T ss_dssp -H---------HHHHHH---HHHHTT-S--------HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHT-
T ss_pred CcHH-------HHHHHH---HHHHHhCC-------CHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCC-
Confidence 5 11 121111 11112211 112223356677777666541 1111 1123455555554443
Q ss_pred hcCChHHHHHHHHHHHHHHHHhhhh
Q 003289 688 RAWDMRTMESLCRACKYAVRTSKRF 712 (833)
Q Consensus 688 ~~~~~~v~e~~~~~~~~~~~~~~~~ 712 (833)
..+++|++.+..++......+|.-
T Consensus 188 -D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 188 -DADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp -SS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred -CCCHHHHHHHHHHHHHHHHHCCHh
Confidence 457899998888888766555443
No 55
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=93.28 E-value=10 Score=40.25 Aligned_cols=171 Identities=9% Similarity=0.150 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHhhccCCCCccccccchhHHHHHhc-c-----CCcchHHH-HHHHHHHHHhhhccCCCCCCCCchhHH
Q 003289 193 ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSS-L-----HSEILSEA-SVNVISELIHYSAAGSSGGATVNMPLI 265 (833)
Q Consensus 193 ~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~~~~-L-----~~~~~~~~-a~~~l~~ii~~~~~~~~~~~~~~~~~i 265 (833)
.++..+|+-+..|+.-.. ..+. ....+++.+++. | +.|+.+++ .+.++..++++..... .+.-..++
T Consensus 42 ~iKkeIL~Li~t~i~~~~--~~~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~---~~~v~~I~ 115 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAE--DPEE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELI---QPQVPQIL 115 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S---HHH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGC---CCCHHHHH
T ss_pred HHHHHHHHHHHHHHhccC--CHHH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhh---hhhHHHHH
Confidence 356778888888888531 1111 223344443332 1 34666654 6778888887765321 11222334
Q ss_pred HHHHHHHHhhHHHhhhc-cCCHHHHHHHHHHHHHHhhHHHHHHHcCC-chhHHHHHHHHhhhcCCCcchhhhhHHHHHHH
Q 003289 266 QVIVPQIMSLKAHLTDS-SKDEEDVKAIARLFADMGDSYVELIATGS-DESMLIVHALLEVASHPEYDIASMTFNFWHSL 343 (833)
Q Consensus 266 ~~l~~~~~~l~~~l~~~-~~d~~~~~~l~~l~~~~~~~~~~~l~~~~-~~~~~~l~~ll~~~~~~~~~v~~~~l~fw~~l 343 (833)
..+|...+ +.+... .+-+|....+.+++..+.+.+...+..-| +.+..+++.++....|++.+|+..++.....+
T Consensus 116 ~~vf~~Tl---~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~l 192 (319)
T PF08767_consen 116 EAVFECTL---PMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLEL 192 (319)
T ss_dssp HHHHHHHH---HHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 44443322 222222 22357778899999999888777666544 56788899999999999999999999998888
Q ss_pred HHHHhhcccccccCcccchHHHHHHHHHHhHHHHHHHHHHHHh
Q 003289 344 QVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSF 386 (833)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 386 (833)
.+.+.+. + .+.....|+.+|..++..++.
T Consensus 193 l~~~~~~------~--------~~~~~~F~~~y~~~il~~if~ 221 (319)
T PF08767_consen 193 LNNVSKT------N--------PEFANQFYQQYYLDILQDIFS 221 (319)
T ss_dssp HHHHHH-------S--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc------C--------HHHHHHHHHHHHHHHHHHHHH
Confidence 8776531 0 123345666666666665554
No 56
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=93.09 E-value=0.2 Score=44.28 Aligned_cols=95 Identities=16% Similarity=0.188 Sum_probs=63.0
Q ss_pred CCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhH-HHHHH
Q 003289 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVLS 538 (833)
Q Consensus 465 ~~w~~~Eaal~~l~~i~e~~~~~-----~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l-~~~l~ 538 (833)
.+|..++.++++++.++...++. ....++.+++.+.. .++.++..++.++++++..-...+. ... ..+++
T Consensus 19 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~g~l~ 94 (120)
T cd00020 19 SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS--EDEEVVKAALWALRNLAAGPEDNKL--IVLEAGGVP 94 (120)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC--CCHHHHHHHHHHHHHHccCcHHHHH--HHHHCCChH
Confidence 45899999999999999875432 12556666666543 3789999999999998753322111 011 12344
Q ss_pred HHHhccCCC-HHHHHHHHHHHHHHHH
Q 003289 539 ILTSGMSTS-EDTAAAAALAFRHICD 563 (833)
Q Consensus 539 ~l~~~l~~~-~~v~~~A~~al~~l~~ 563 (833)
.+.+.++++ ..++..|+.+|.++|+
T Consensus 95 ~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 95 KLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 455555543 2499999999999874
No 57
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.72 E-value=22 Score=40.72 Aligned_cols=94 Identities=13% Similarity=0.190 Sum_probs=60.5
Q ss_pred HHHHhhcccCcc-ccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHH
Q 003289 476 CIRAISTYVSVV-EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAA 553 (833)
Q Consensus 476 ~l~~i~e~~~~~-~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~ 553 (833)
|++.++--++++ ..+.-+.+|..+..- .|.+|..++.++.+. |+ .+|+ .+.+.++-|..-+.+|+ .|+++
T Consensus 129 AL~GLS~fvTpdLARDLa~Dv~tLL~ss--kpYvRKkAIl~lykv--FL-kYPe---Alr~~FprL~EkLeDpDp~V~SA 200 (877)
T KOG1059|consen 129 ALSGLSCIVTPDLARDLADDVFTLLNSS--KPYVRKKAILLLYKV--FL-KYPE---ALRPCFPRLVEKLEDPDPSVVSA 200 (877)
T ss_pred eecccccccCchhhHHHHHHHHHHHhcC--chHHHHHHHHHHHHH--HH-hhhH---hHhhhHHHHHHhccCCCchHHHH
Confidence 334444444444 234556777776532 588999888877654 34 4565 79999999999999876 48887
Q ss_pred HHHHHHHHHHHhhhhhhcCHHHHH
Q 003289 554 AALAFRHICDDCRKKLCGYLDGLY 577 (833)
Q Consensus 554 A~~al~~l~~~~~~~l~~~l~~ll 577 (833)
|..-|=.+++..++...|..+.|.
T Consensus 201 AV~VICELArKnPknyL~LAP~ff 224 (877)
T KOG1059|consen 201 AVSVICELARKNPQNYLQLAPLFY 224 (877)
T ss_pred HHHHHHHHHhhCCcccccccHHHH
Confidence 777666666555544444444443
No 58
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.64 E-value=2.8 Score=46.55 Aligned_cols=138 Identities=17% Similarity=0.165 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHHHHHHhhh---hhh--cCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHH
Q 003289 547 SEDTAAAAALAFRHICDDCRK---KLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALE 621 (833)
Q Consensus 547 ~~~v~~~A~~al~~l~~~~~~---~l~--~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~ 621 (833)
|. ++..||.|+.+++..... .+. .-++.|+ .++.. -..+.++..+=|+|.++.--|.=+-.-.-.
T Consensus 124 ~~-lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi----~Ll~s-----~~~~v~eQavWALgNIagds~~~Rd~vl~~ 193 (514)
T KOG0166|consen 124 PT-LQFEAAWALTNIASGTSEQTKVVVDAGAVPIFI----QLLSS-----PSADVREQAVWALGNIAGDSPDCRDYVLSC 193 (514)
T ss_pred hh-HHHHHHHHHHHHhcCchhhccccccCCchHHHH----HHhcC-----CcHHHHHHHHHHHhccccCChHHHHHHHhh
Confidence 44 999999999999975432 222 2233333 33443 246789999999999988754322111112
Q ss_pred HhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Q 003289 622 MLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRA 701 (833)
Q Consensus 622 ~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~~ 701 (833)
..+.|++..+ ..... ...+....=+++.++++.+ |.|....++.+.|++..++. ..|++|...+|-+
T Consensus 194 g~l~pLl~~l----~~~~~------~~~lRn~tW~LsNlcrgk~-P~P~~~~v~~iLp~L~~ll~--~~D~~Vl~Da~WA 260 (514)
T KOG0166|consen 194 GALDPLLRLL----NKSDK------LSMLRNATWTLSNLCRGKN-PSPPFDVVAPILPALLRLLH--STDEEVLTDACWA 260 (514)
T ss_pred cchHHHHHHh----ccccc------hHHHHHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHHHHHh--cCCHHHHHHHHHH
Confidence 3445554332 22111 1122224556777888654 77777788889998888764 5788999989988
Q ss_pred HHHHHH
Q 003289 702 CKYAVR 707 (833)
Q Consensus 702 ~~~~~~ 707 (833)
+++...
T Consensus 261 lsyLsd 266 (514)
T KOG0166|consen 261 LSYLTD 266 (514)
T ss_pred HHHHhc
Confidence 887553
No 59
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.21 E-value=8 Score=43.05 Aligned_cols=138 Identities=14% Similarity=0.188 Sum_probs=85.6
Q ss_pred CcchhhHHHHHHHHhhcccCccc-----cccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHH
Q 003289 466 EWRPAEAALFCIRAISTYVSVVE-----AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 540 (833)
Q Consensus 466 ~w~~~Eaal~~l~~i~e~~~~~~-----~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l 540 (833)
+-.-.|=|.|+++.|+...+.-. ...+..++..+..- ..-...+++.|+++.+++--...|. ...+..+|+.+
T Consensus 165 ~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~-~~~~~lRn~tW~LsNlcrgk~P~P~-~~~v~~iLp~L 242 (514)
T KOG0166|consen 165 SADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKS-DKLSMLRNATWTLSNLCRGKNPSPP-FDVVAPILPAL 242 (514)
T ss_pred cHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccc-cchHHHHHHHHHHHHHHcCCCCCCc-HHHHHHHHHHH
Confidence 33457889999999887654321 23344455444321 1236888999999999875544443 24678888888
Q ss_pred HhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHH-HHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhc
Q 003289 541 TSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDG-LYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (833)
Q Consensus 541 ~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~-ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (833)
...+++.+ .|..-||.|+..+.+...+.+.-.++. .+..+.+++... +...+.-.+.++|.|+..
T Consensus 243 ~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~-----~~~v~~PaLRaiGNIvtG 309 (514)
T KOG0166|consen 243 LRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS-----SPKVVTPALRAIGNIVTG 309 (514)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC-----CcccccHHHhhccceeec
Confidence 88887654 499999999999997554433211111 233333344321 223456688899996665
No 60
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=92.18 E-value=30 Score=40.87 Aligned_cols=243 Identities=12% Similarity=0.100 Sum_probs=131.4
Q ss_pred cccHHHHHhhccCCC--ChHHHHHHHHHHHHhchHHHhhCCCC--hhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 003289 489 AEVMPQVMALLPKLP--QQPQLLQTVCLTIGAYSKWFDAASSD--PSILASVLSILTSGMSTSEDTAAAAALAFRHICDD 564 (833)
Q Consensus 489 ~~~l~~l~~~l~~l~--~~~~v~~t~~~~ig~y~~~l~~~p~~--~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~ 564 (833)
.+.+|.+++.|.++. ....+....+++++...++=...+.. ....|..+..+...-++|- |...+-..|.++++.
T Consensus 525 ~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~-V~~~~qd~f~el~q~ 603 (1005)
T KOG2274|consen 525 LSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQ-VASLAQDLFEELLQI 603 (1005)
T ss_pred cccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCch-HHHHHHHHHHHHHHH
Confidence 456777777765442 13445555566665554432221110 1467777788877777887 999999999999973
Q ss_pred hhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccc
Q 003289 565 CRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQK 644 (833)
Q Consensus 565 ~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~ 644 (833)
.....|+..-++..+.++++.+ .++.+.......++-+..++...|++--...+...+.|+. +|.-. . .|.
T Consensus 604 -~~~~g~m~e~~iPslisil~~~-~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVa----k~tlH-s--dD~ 674 (1005)
T KOG2274|consen 604 -AANYGPMQERLIPSLISVLQLN-ADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVA----KITLH-S--DDH 674 (1005)
T ss_pred -HHhhcchHHHHHHHHHHHHcCc-ccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhH----hheee-c--CCh
Confidence 3345566555555555555543 1234455566777778888888887633344444444443 33211 1 111
Q ss_pred cCchhhhHHHHHHHHhhhccC----C--cccHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH----Hhhhhhh
Q 003289 645 KHPRDLTVHIDRFAYIFRYVN----H--PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVR----TSKRFMG 714 (833)
Q Consensus 645 ~~~~~~~~~l~~l~~~~~~~~----~--~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~----~~~~~~~ 714 (833)
..+..+-++++..+.... . -+|-.. +.-+|.++.+++. ++.-|.+|.+.++.+. .+|..+.
T Consensus 675 ---~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~-~~yImqV~sqLLd-----p~~sds~a~~VG~lV~tLit~a~~el~ 745 (1005)
T KOG2274|consen 675 ---ETLQNATECLRALISVTLEQLLTWHDEPGHN-LWYIMQVLSQLLD-----PETSDSAAAFVGPLVLTLITHASSELG 745 (1005)
T ss_pred ---HHHHhHHHHHHHHHhcCHHHHHhhccCCCcc-HHHHHHHHHHHcC-----CccchhHHHHHhHHHHHHHHHHHHHhc
Confidence 122334456665554310 0 011112 4556666666553 4555666666666443 3566677
Q ss_pred hhHHHHHHHHHHHHhhcCC-ccHhhhHHHHHHHhcCC
Q 003289 715 ITIGAILEEIQGLYQQHQQ-PCFLYLSSEVIKIFGSD 750 (833)
Q Consensus 715 ~~l~~l~~~l~~~~~~~~~-~~~L~~~~~li~~fg~~ 750 (833)
|.+..++..++...++.+. +..-+++..+.+.+..+
T Consensus 746 ~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t~ 782 (1005)
T KOG2274|consen 746 PNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHTD 782 (1005)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCC
Confidence 7777777666555554442 22234444444444443
No 61
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=91.40 E-value=5.7 Score=40.96 Aligned_cols=243 Identities=12% Similarity=0.158 Sum_probs=127.9
Q ss_pred CCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhccCCCChHHHHHHHHHHHHhchH-------HHhhCCCChhh
Q 003289 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSK-------WFDAASSDPSI 532 (833)
Q Consensus 465 ~~w~~~Eaal~~l~~i~e~~~~~-----~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~-------~l~~~p~~~~~ 532 (833)
.+--++||+ |++..|+.+-+.. +...+|-+++.|.+- ...|+..+.|.+|..+. ++-... .
T Consensus 128 ~~mlqfEAa-WalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~--~~~V~eQavWALGNiAGDS~~~RD~vL~~g----a 200 (526)
T COG5064 128 RDMLQFEAA-WALTNIASGTTQQTKVVVDAGAVPLFIQLLSST--EDDVREQAVWALGNIAGDSEGCRDYVLQCG----A 200 (526)
T ss_pred hhHHHHHHH-HHHhhhccCcccceEEEEeCCchHHHHHHHcCc--hHHHHHHHHHHhccccCCchhHHHHHHhcC----c
Confidence 344557754 7888888775533 345688888887643 57899999999998754 333332 6
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhh-hcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcC
Q 003289 533 LASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKL-CGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 611 (833)
Q Consensus 533 l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~~~l-~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~ 611 (833)
+.+++.++.+.-.+-. .-+.|...+.++|+.-.+.= -..+..-+..+.+++.. .+.+.....+=|++++...
T Consensus 201 leplL~ll~ss~~~is-mlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys-----~D~evlvDA~WAiSYlsDg- 273 (526)
T COG5064 201 LEPLLGLLLSSAIHIS-MLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYS-----RDPEVLVDACWAISYLSDG- 273 (526)
T ss_pred hHHHHHHHHhccchHH-HHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhh-----cCHHHHHHHHHHHHHhccC-
Confidence 8888888865443334 56677888899986532211 12344445556666542 4566666666667665443
Q ss_pred ChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHhhcCC
Q 003289 612 PQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWD 691 (833)
Q Consensus 612 ~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~ 691 (833)
|.|.....+.. .+..+|.+.+..+.. .. ..-+++.++.++-+-... .-+-.--.+.+.+..++++...
T Consensus 274 ~~E~i~avld~---g~~~RLvElLs~~sa-----~i--qtPalR~vGNIVTG~D~Q-TqviI~~G~L~a~~~lLs~~ke- 341 (526)
T COG5064 274 PNEKIQAVLDV---GIPGRLVELLSHESA-----KI--QTPALRSVGNIVTGSDDQ-TQVIINCGALKAFRSLLSSPKE- 341 (526)
T ss_pred cHHHHHHHHhc---CCcHHHHHHhcCccc-----cc--cCHHHHhhcCeeecCccc-eehheecccHHHHHHHhcChhh-
Confidence 44444333221 233445555554321 11 122566677665543211 0000001233444555544222
Q ss_pred hHHHHHHHHHHHHHHHH----hhhhh-hhhHHHHHHHHH-HHHhhcCCc
Q 003289 692 MRTMESLCRACKYAVRT----SKRFM-GITIGAILEEIQ-GLYQQHQQP 734 (833)
Q Consensus 692 ~~v~e~~~~~~~~~~~~----~~~~~-~~~l~~l~~~l~-~~~~~~~~~ 734 (833)
.++..+|--+..+-.. ....+ ..++|+++..+. ..|+...-+
T Consensus 342 -~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEA 389 (526)
T COG5064 342 -NIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEA 389 (526)
T ss_pred -hhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 4444444433322110 01112 356677777664 345554433
No 62
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.36 E-value=0.22 Score=32.07 Aligned_cols=30 Identities=27% Similarity=0.435 Sum_probs=23.0
Q ss_pred HHHHHHhccCCCH-HHHHHHHHHHHHHHHHh
Q 003289 536 VLSILTSGMSTSE-DTAAAAALAFRHICDDC 565 (833)
Q Consensus 536 ~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~ 565 (833)
+++.+++.++++. +||..|+.+|.++++.|
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 3566677777764 59999999999999764
No 63
>PRK09687 putative lyase; Provisional
Probab=90.68 E-value=23 Score=36.80 Aligned_cols=120 Identities=9% Similarity=0.005 Sum_probs=69.1
Q ss_pred CCcchhhHHHHHHHHhhcccCccccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhcc
Q 003289 465 NEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGM 544 (833)
Q Consensus 465 ~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l 544 (833)
.+-..+..+.++++.++..-.. ..+.++.+...+.+ ..++.||..++..+|..+. .++. ..+.++..+...+
T Consensus 66 ~d~~vR~~A~~aLg~lg~~~~~-~~~a~~~L~~l~~~-D~d~~VR~~A~~aLG~~~~---~~~~---~~~~a~~~l~~~~ 137 (280)
T PRK09687 66 KNPIERDIGADILSQLGMAKRC-QDNVFNILNNLALE-DKSACVRASAINATGHRCK---KNPL---YSPKIVEQSQITA 137 (280)
T ss_pred CCHHHHHHHHHHHHhcCCCccc-hHHHHHHHHHHHhc-CCCHHHHHHHHHHHhcccc---cccc---cchHHHHHHHHHh
Confidence 3446678888888888763211 11233333333222 2368999999999998642 1121 2345555555555
Q ss_pred CCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHH
Q 003289 545 STSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (833)
Q Consensus 545 ~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~v 607 (833)
.+++ .|+..|+.|+.++.. +..+..+..++..+ +.+.|....+++|.+
T Consensus 138 ~D~~~~VR~~a~~aLg~~~~----------~~ai~~L~~~L~d~-----~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 138 FDKSTNVRFAVAFALSVIND----------EAAIPLLINLLKDP-----NGDVRNWAAFALNSN 186 (280)
T ss_pred hCCCHHHHHHHHHHHhccCC----------HHHHHHHHHHhcCC-----CHHHHHHHHHHHhcC
Confidence 4432 489899988865421 11234444444432 346788888888866
No 64
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=90.59 E-value=0.23 Score=37.09 Aligned_cols=52 Identities=21% Similarity=0.226 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHH
Q 003289 550 TAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSM 606 (833)
Q Consensus 550 v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~ 606 (833)
|+..|+.+|.++++.+...+.|+.+.++..+..++... +.+.|.....++|.
T Consensus 3 vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~-----~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 3 VRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDD-----DDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSS-----SHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999988642 24678888877774
No 65
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=90.05 E-value=80 Score=41.97 Aligned_cols=210 Identities=14% Similarity=0.114 Sum_probs=119.6
Q ss_pred CCcchhhHHHHHHHHhhcccCccccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCC------ChhhHHHHHH
Q 003289 465 NEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASS------DPSILASVLS 538 (833)
Q Consensus 465 ~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~------~~~~l~~~l~ 538 (833)
.+++..+.+++++..+...- +.+.++.+...+.. +.+.++..+++.+|....-...+.. ...-++.+..
T Consensus 542 gd~~~q~~Aa~AL~nLi~~~---d~~~I~~Lv~LLls--dd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~ 616 (2102)
T PLN03200 542 GGPKGQEIAAKTLTKLVRTA---DAATISQLTALLLG--DLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQ 616 (2102)
T ss_pred CCHHHHHHHHHHHHHHHhcc---chhHHHHHHHHhcC--CChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHH
Confidence 46788899999999887653 33456777666432 2456666667777665432222110 0013444444
Q ss_pred HHHhccCCC-HHHHHHHHHHHHHHHHHhhhh---h--hcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCC
Q 003289 539 ILTSGMSTS-EDTAAAAALAFRHICDDCRKK---L--CGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 612 (833)
Q Consensus 539 ~l~~~l~~~-~~v~~~A~~al~~l~~~~~~~---l--~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~ 612 (833)
.+ .++ +.++..|+.++.++|...++. + ..-+++++..+. . -+.+.+...-.+++++.....
T Consensus 617 LL----~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLs----s-----~~~~v~keAA~AL~nL~~~~~ 683 (2102)
T PLN03200 617 LL----SSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLT----N-----NTEAVATQSARALAALSRSIK 683 (2102)
T ss_pred HH----cCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHh----c-----CChHHHHHHHHHHHHHHhCCC
Confidence 44 333 249999999999999744332 2 255666666543 2 135678888889999987665
Q ss_pred hHHHHHHHHH-hhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHH-HHHHHHHHHHHHhhcC
Q 003289 613 QVDAKKALEM-LCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI-QRLWPIFKAIFDIRAW 690 (833)
Q Consensus 613 ~~~~~~~l~~-l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~il~~~~~ 690 (833)
.++...+++. .+.|++.- +...+ ..-...++..++.+++.. +....+. ....+.+..++.. +
T Consensus 684 ~~q~~~~v~~GaV~pL~~L----L~~~d-------~~v~e~Al~ALanLl~~~---e~~~ei~~~~~I~~Lv~lLr~--G 747 (2102)
T PLN03200 684 ENRKVSYAAEDAIKPLIKL----AKSSS-------IEVAEQAVCALANLLSDP---EVAAEALAEDIILPLTRVLRE--G 747 (2102)
T ss_pred HHHHHHHHHcCCHHHHHHH----HhCCC-------hHHHHHHHHHHHHHHcCc---hHHHHHHhcCcHHHHHHHHHh--C
Confidence 4443333332 45555443 33221 111233667777766643 2222222 3445566665553 4
Q ss_pred ChHHHHHHHHHHHHHHHH
Q 003289 691 DMRTMESLCRACKYAVRT 708 (833)
Q Consensus 691 ~~~v~e~~~~~~~~~~~~ 708 (833)
+++.++.++.++....+.
T Consensus 748 ~~~~k~~Aa~AL~~L~~~ 765 (2102)
T PLN03200 748 TLEGKRNAARALAQLLKH 765 (2102)
T ss_pred ChHHHHHHHHHHHHHHhC
Confidence 578888888888776654
No 66
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=90.01 E-value=38 Score=38.18 Aligned_cols=97 Identities=14% Similarity=0.186 Sum_probs=63.2
Q ss_pred ccccHHHHHhhcc-CCC-ChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHH
Q 003289 488 EAEVMPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST--SEDTAAAAALAFRHICD 563 (833)
Q Consensus 488 ~~~~l~~l~~~l~-~l~-~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~--~~~v~~~A~~al~~l~~ 563 (833)
..++++.++..+. .+. ..|.+|..+..+.|+.+.-++...+. +.+..+=.++...++. |+ |-...-.|+..+..
T Consensus 598 ~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~-~~l~klg~iLyE~lge~ypE-vLgsil~Ai~~I~s 675 (975)
T COG5181 598 GKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGET-KELAKLGNILYENLGEDYPE-VLGSILKAICSIYS 675 (975)
T ss_pred cCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchH-HHHHHHhHHHHHhcCcccHH-HHHHHHHHHHHHhh
Confidence 4566777776543 232 25889999999999999988865431 3556666667777764 45 66666666666654
Q ss_pred Hhh-hhhhcCHHHHHHHHHHHhcC
Q 003289 564 DCR-KKLCGYLDGLYNVYRTAVNG 586 (833)
Q Consensus 564 ~~~-~~l~~~l~~ll~~l~~~l~~ 586 (833)
..+ ..+.|=+.+|+..+.+++.+
T Consensus 676 v~~~~~mqpPi~~ilP~ltPILrn 699 (975)
T COG5181 676 VHRFRSMQPPISGILPSLTPILRN 699 (975)
T ss_pred hhcccccCCchhhccccccHhhhh
Confidence 433 34667777777777666654
No 67
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.87 E-value=64 Score=40.61 Aligned_cols=350 Identities=13% Similarity=0.126 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHHHHhhccCCCCcccc--ccchhHHHHHhccCCc--chHHHHHHHHHH
Q 003289 172 KELTSQMEVALSTLTACLHINE--LKEQVLEAFASWLRLKHRIPGSVL--ASHPLVLTALSSLHSE--ILSEASVNVISE 245 (833)
Q Consensus 172 ~~l~~~~~~vl~~l~~~l~~~~--~~~~~l~~~~~Wi~~~~~i~~~~~--~~~~ll~~~~~~L~~~--~~~~~a~~~l~~ 245 (833)
+.+..+.+.++.=|..+--+|+ ++.....- |=.+. .-+...+ ...++++-++..|.+. ++++++|-.+.+
T Consensus 990 ~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sI---W~~Li-~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~d 1065 (1702)
T KOG0915|consen 990 EKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSI---WNALI-TDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALAD 1065 (1702)
T ss_pred HhhhhHHHHhhHHHhhhccCCcHHHHHHHHHH---HHHhc-cChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 3455555666666666655553 22222221 32221 0112211 1234455555555555 578999999999
Q ss_pred HHhhhccCCCCCCCCchh-HHHHHHHHHHhhHHHhhhccCCH-HHHHHHHHHHHHHhhHHHHHHH--cCCchhHHHHHHH
Q 003289 246 LIHYSAAGSSGGATVNMP-LIQVIVPQIMSLKAHLTDSSKDE-EDVKAIARLFADMGDSYVELIA--TGSDESMLIVHAL 321 (833)
Q Consensus 246 ii~~~~~~~~~~~~~~~~-~i~~l~~~~~~l~~~l~~~~~d~-~~~~~l~~l~~~~~~~~~~~l~--~~~~~~~~~l~~l 321 (833)
+++..+.. +..++++ ++..+|.. .+|- |..+..+..+.....+.+..+. .++....+++..+
T Consensus 1066 Ll~g~~~~---~~~e~lpelw~~~fRv-----------mDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~i 1131 (1702)
T KOG0915|consen 1066 LLQGRPFD---QVKEKLPELWEAAFRV-----------MDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDII 1131 (1702)
T ss_pred HHcCCChH---HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHH
Confidence 99754210 0001111 11222211 1111 2222222222222112111111 2333445555555
Q ss_pred HhhhcCCC-----cchhhhhHHHHHHHHHHHhhcccccccCcccchHHHHHHHHHHhHHHHHHHHHHHHhhccCCCC---
Q 003289 322 LEVASHPE-----YDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD--- 393 (833)
Q Consensus 322 l~~~~~~~-----~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d--- 393 (833)
|-++=.++ .+|+..++.-..++.+.. -..++|++..|+..++.-..--++
T Consensus 1132 LPfLl~~gims~v~evr~~si~tl~dl~Kss----------------------g~~lkP~~~~LIp~ll~~~s~lE~~vL 1189 (1702)
T KOG0915|consen 1132 LPFLLDEGIMSKVNEVRRFSIGTLMDLAKSS----------------------GKELKPHFPKLIPLLLNAYSELEPQVL 1189 (1702)
T ss_pred HHHHhccCcccchHHHHHHHHHHHHHHHHhc----------------------hhhhcchhhHHHHHHHHHccccchHHH
Confidence 55544332 466666666544443321 125678888888777652211110
Q ss_pred -CC--CCChhhhHHhHhhhhcccccCCccchhhhhhhchhHHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchh
Q 003289 394 -YQ--DLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPA 470 (833)
Q Consensus 394 -~~--~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~ 470 (833)
+- ..+..+.+....-|..+...++ +-+++..|...++ ..+++.+...+.+....+ ..-..+
T Consensus 1190 nYls~r~~~~e~ealDt~R~s~akssp-----------mmeTi~~ci~~iD-~~vLeelip~l~el~R~s----Vgl~Tk 1253 (1702)
T KOG0915|consen 1190 NYLSLRLINIETEALDTLRASAAKSSP-----------MMETINKCINYID-ISVLEELIPRLTELVRGS----VGLGTK 1253 (1702)
T ss_pred HHHHHhhhhhHHHHHHHHHHhhhcCCc-----------HHHHHHHHHHhhh-HHHHHHHHHHHHHHHhcc----CCCCcc
Confidence 00 0122344455556655333333 4566777777777 568888888888776542 223334
Q ss_pred hHHHHHHHHhhcccCccccccHHHHHhhc-cCCCC-hHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCH
Q 003289 471 EAALFCIRAISTYVSVVEAEVMPQVMALL-PKLPQ-QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE 548 (833)
Q Consensus 471 Eaal~~l~~i~e~~~~~~~~~l~~l~~~l-~~l~~-~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~ 548 (833)
=+|-..+..++..+..+..++-..++..+ +.+.+ ++.+++......|-..++-..+.- ..++...+.-++.-. +.
T Consensus 1254 vg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~-qKLie~~l~~~l~k~--es 1330 (1702)
T KOG0915|consen 1254 VGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQM-QKLIETLLADLLGKD--ES 1330 (1702)
T ss_pred hhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHH-HHHHHHHHHHHhccC--CC
Confidence 44555556666667767777877888764 45543 788888888888877765553311 124444443332221 11
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHH
Q 003289 549 DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYR 581 (833)
Q Consensus 549 ~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~ 581 (833)
...-+|..+.+|.....+.|..|.+.++..+.
T Consensus 1331 -~~siscatis~Ian~s~e~Lkn~asaILPLiF 1362 (1702)
T KOG0915|consen 1331 -LKSISCATISNIANYSQEMLKNYASAILPLIF 1362 (1702)
T ss_pred -ccchhHHHHHHHHHhhHHHHHhhHHHHHHHHH
Confidence 23455555555888888888888888886654
No 68
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=89.77 E-value=33 Score=37.20 Aligned_cols=123 Identities=9% Similarity=0.112 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCCc------cHhhhHHHHHHHhcCC-cchh--HHHHHHHHHHH
Q 003289 695 MESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQP------CFLYLSSEVIKIFGSD-PSCA--SYLHNLIEALF 765 (833)
Q Consensus 695 ~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~------~~L~~~~~li~~fg~~-~~~~--~~~~~~~~~l~ 765 (833)
+.+++.+++...+..+..+.+.+...+..+++.|..++.. +.+++++.+..+-... .+.. ..+.++-.-+.
T Consensus 228 R~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~ 307 (370)
T PF08506_consen 228 RRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFS 307 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHH
Confidence 3578899998877777888887877888888888776653 5577777666532111 0111 11112222233
Q ss_pred HHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCccCCcCCcHHHHHHHHHcccccC
Q 003289 766 KRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQH 824 (833)
Q Consensus 766 ~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~~~~~l~~~~ 824 (833)
+.+++-|+ .+...+|=+..+.+.++..+-... +.+.+..+++..+.+|+.++
T Consensus 308 ~~v~peL~--~~~~~~piLka~aik~~~~Fr~~l-----~~~~l~~~~~~l~~~L~~~~ 359 (370)
T PF08506_consen 308 QHVLPELQ--PDVNSHPILKADAIKFLYTFRNQL-----PKEQLLQIFPLLVNHLQSSS 359 (370)
T ss_dssp HHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS------HHHHHHHHHHHHHHTTSS-
T ss_pred HHhHHHhc--ccCCCCcchHHHHHHHHHHHHhhC-----CHHHHHHHHHHHHHHhCCCC
Confidence 34444444 234667877888889988887654 45567788999999888543
No 69
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=89.15 E-value=6.1 Score=37.43 Aligned_cols=132 Identities=12% Similarity=0.131 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhccCCCChHHHHHHHHHHHHhc
Q 003289 445 TLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAY 519 (833)
Q Consensus 445 ~l~~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~-----~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y 519 (833)
.+..+...+.+.+. +.+...+-+++..+..+.+..+.+ ....+..+++.+.+ ++.+.+...++.++++.
T Consensus 22 ~l~~l~~ri~~LL~-----s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~-~~~~~~~~~ai~~L~~l 95 (165)
T PF08167_consen 22 ALHKLVTRINSLLQ-----SKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK-PDPPSVLEAAIITLTRL 95 (165)
T ss_pred HHHHHHHHHHHHhC-----CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 44445555555442 344555667888888888877432 23456666666655 44678899999999999
Q ss_pred hHHHhhCCCCh-----hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHH
Q 003289 520 SKWFDAASSDP-----SILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTA 583 (833)
Q Consensus 520 ~~~l~~~p~~~-----~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~ 583 (833)
..+....|+.. ..++++++.+++-++.+. +...+..++..+......-+.||...+-..+..+
T Consensus 96 ~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~~-~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 96 FDLIRGKPTLTREIATPNLPKFIQSLLQLLQDSS-CPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred HHHhcCCCchHHHHhhccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 98888877631 356777777766555444 6778888888888777777778877776666554
No 70
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=89.12 E-value=93 Score=41.42 Aligned_cols=230 Identities=13% Similarity=0.091 Sum_probs=130.4
Q ss_pred cchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCC---hhhHHHHHH
Q 003289 467 WRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSD---PSILASVLS 538 (833)
Q Consensus 467 w~~~Eaal~~l~~i~e~~~~~-----~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~---~~~l~~~l~ 538 (833)
-...+.+++.++.++..-... +...+|.+++.|.. .++.++..++++++..+..-.+.... ...+++++.
T Consensus 460 ~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s--~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~ 537 (2102)
T PLN03200 460 EQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET--GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLW 537 (2102)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHH
Confidence 355688899999998654432 24568888887752 36899999999999887521110000 014555555
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHH
Q 003289 539 ILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKK 618 (833)
Q Consensus 539 ~l~~~l~~~~~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~ 618 (833)
++-++ +++ ++..|+.++.+++........ ++ +..++.. -+...+..+++++|.++.....++...
T Consensus 538 LL~sg--d~~-~q~~Aa~AL~nLi~~~d~~~I---~~----Lv~LLls-----dd~~~~~~aL~vLgnIlsl~~~~d~~~ 602 (2102)
T PLN03200 538 LLKNG--GPK-GQEIAAKTLTKLVRTADAATI---SQ----LTALLLG-----DLPESKVHVLDVLGHVLSVASLEDLVR 602 (2102)
T ss_pred HHhCC--CHH-HHHHHHHHHHHHHhccchhHH---HH----HHHHhcC-----CChhHHHHHHHHHHHHHhhcchhHHHH
Confidence 55332 334 899999999999865433221 22 2233433 124677888999999988765543221
Q ss_pred HHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHhhcCChHHHHHH
Q 003289 619 ALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESL 698 (833)
Q Consensus 619 ~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~ 698 (833)
.. ....--+..+.+++..... +....+...|+.++.+-.. .....+.....|.+..++.. ++.++...+
T Consensus 603 ~g-~~~~ggL~~Lv~LL~sgs~-------~ikk~Aa~iLsnL~a~~~d-~~~avv~agaIpPLV~LLss--~~~~v~keA 671 (2102)
T PLN03200 603 EG-SAANDALRTLIQLLSSSKE-------ETQEKAASVLADIFSSRQD-LCESLATDEIINPCIKLLTN--NTEAVATQS 671 (2102)
T ss_pred Hh-hhccccHHHHHHHHcCCCH-------HHHHHHHHHHHHHhcCChH-HHHHHHHcCCHHHHHHHHhc--CChHHHHHH
Confidence 11 0012334455555554321 2223356677777764321 11122334556666666553 556777778
Q ss_pred HHHHHHHHHHhhh----h-h-hhhHHHHHHHH
Q 003289 699 CRACKYAVRTSKR----F-M-GITIGAILEEI 724 (833)
Q Consensus 699 ~~~~~~~~~~~~~----~-~-~~~l~~l~~~l 724 (833)
+.++....+.... . + ...+|++++.+
T Consensus 672 A~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL 703 (2102)
T PLN03200 672 ARALAALSRSIKENRKVSYAAEDAIKPLIKLA 703 (2102)
T ss_pred HHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHH
Confidence 8887776653211 1 1 23466666654
No 71
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=88.84 E-value=26 Score=35.74 Aligned_cols=133 Identities=14% Similarity=0.166 Sum_probs=81.7
Q ss_pred CCcchhhHHHHHHHHhhcccCccc-----cccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHH
Q 003289 465 NEWRPAEAALFCIRAISTYVSVVE-----AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSI 539 (833)
Q Consensus 465 ~~w~~~Eaal~~l~~i~e~~~~~~-----~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~ 539 (833)
.+-...|.++++++..+.. +... ...++-+...+.. | +|.++..++.++..++.-.........+++.+..-
T Consensus 25 ~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~-p-~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~ 101 (254)
T PF04826_consen 25 EDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLND-P-NPSVREKALNALNNLSVNDENQEQIKMYIPQVCEE 101 (254)
T ss_pred CChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCC-C-ChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH
Confidence 3444578888888875442 2211 1334444444433 3 78999999999998765433322223467777766
Q ss_pred HHhccCCCHHHHHHHHHHHHHHHH--HhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhc
Q 003289 540 LTSGMSTSEDTAAAAALAFRHICD--DCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (833)
Q Consensus 540 l~~~l~~~~~v~~~A~~al~~l~~--~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (833)
+.+.--+.+ ++.++-.++.+++- +....+..+++.++.. +..+ +...+..+.+.+..+...
T Consensus 102 ~~s~~lns~-~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~L----L~~G-----~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 102 TVSSPLNSE-VQLAGLRLLTNLTVTNDYHHMLANYIPDLLSL----LSSG-----SEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HhcCCCCCH-HHHHHHHHHHccCCCcchhhhHHhhHHHHHHH----HHcC-----ChHHHHHHHHHHHHhccC
Confidence 655433455 89999999999863 3344566777766543 4432 245778888888776655
No 72
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.49 E-value=58 Score=38.24 Aligned_cols=291 Identities=14% Similarity=0.166 Sum_probs=151.3
Q ss_pred HHHHhhccC-CCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhh-----
Q 003289 493 PQVMALLPK-LPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCR----- 566 (833)
Q Consensus 493 ~~l~~~l~~-l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~----- 566 (833)
..+-+.+.+ +..+|.+|+++=+.+.+.. .++. |--.+++.+.++--++. .+.+|+.+|.+.|+.--
T Consensus 5 e~l~~~l~qTl~pdps~rk~aEr~L~~~e----~q~~---y~l~lL~Lv~~~~~d~~-~r~aaav~fKN~iKr~W~~~~~ 76 (960)
T KOG1992|consen 5 ETLANYLLQTLSPDPSVRKPAERALRSLE----GQQN---YPLLLLNLVANGQQDPQ-IRVAAAVYFKNYIKRNWIPAED 76 (960)
T ss_pred HHHHHHHHhcCCCCCccCchHHHHHHHhc----cCCC---chHHHHHHHhccCcChh-HHHHHHHHHHHHHHhccCcCCC
Confidence 334444433 3335778877777666543 3344 66777888876655566 89999999999998421
Q ss_pred --hhhh-cCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCccc
Q 003289 567 --KKLC-GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQ 643 (833)
Q Consensus 567 --~~l~-~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~ 643 (833)
..+. ..-+.|-..+.++.-+ .+..-+..+-||++.+...-=+++... |+..++.++. ..+
T Consensus 77 ~~~~i~~~~~e~ikslIv~lMl~-----s~~~iQ~qlseal~~Ig~~DFP~kWpt----Ll~dL~~~ls----~~D---- 139 (960)
T KOG1992|consen 77 SPIKIIEEDREQIKSLIVTLMLS-----SPFNIQKQLSEALSLIGKRDFPDKWPT----LLPDLVARLS----SGD---- 139 (960)
T ss_pred CccccchhHHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHHHhccccchhhHH----HHHHHHhhcc----ccc----
Confidence 1222 1222333333333221 235578889999986654421223332 3333333321 110
Q ss_pred ccCchhhhHHHHHHHHhhhccCC------------------cccHHHHHHHHHHHHHHHHHhhcCChHHHHH-------H
Q 003289 644 KKHPRDLTVHIDRFAYIFRYVNH------------------PEAVADAIQRLWPIFKAIFDIRAWDMRTMES-------L 698 (833)
Q Consensus 644 ~~~~~~~~~~l~~l~~~~~~~~~------------------~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~-------~ 698 (833)
.......+.....+|+-+.. ..|+...+++.+.... ...+|...... +
T Consensus 140 ---~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~----~~~~~~~~l~~lf~vlll~ 212 (960)
T KOG1992|consen 140 ---FNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQ----RHANDAAALNILFGVLLLI 212 (960)
T ss_pred ---hHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh----hcccchhHHHHHHHHHHHH
Confidence 11112233333334444321 1233333333332221 12333332111 2
Q ss_pred HHHHHH-HHHHhhhhhhhhHHHHHHHHHHHHh--------hcCCccHhhh----HHHHHHHhcCCcchhHHHHHHHHHHH
Q 003289 699 CRACKY-AVRTSKRFMGITIGAILEEIQGLYQ--------QHQQPCFLYL----SSEVIKIFGSDPSCASYLHNLIEALF 765 (833)
Q Consensus 699 ~~~~~~-~~~~~~~~~~~~l~~l~~~l~~~~~--------~~~~~~~L~~----~~~li~~fg~~~~~~~~~~~~~~~l~ 765 (833)
|.++.. .+..+.+|+...+...+.....-++ ..+.+..|.- +|.++..|... +.+.+..++..++
T Consensus 213 ~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~k--YeEef~~fl~~fv 290 (960)
T KOG1992|consen 213 CKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATK--YEEEFQPFLPDFV 290 (960)
T ss_pred HHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHh--hHHHHHhhHHHHH
Confidence 222222 1112344555544444443333222 1223344433 46666677766 7788888999998
Q ss_pred HHHHHhhcccccCCcCCchHHHHHHHHHHHHh--hCCCccCCcCCcHHHHHHHH
Q 003289 766 KRTTCLLTSIEEFTSRPDVADDCFLLASRCIR--YCPQLFIPSSVFPSLVDCSM 817 (833)
Q Consensus 766 ~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~~~--~~p~~~~~~~~l~~~~~~~~ 817 (833)
..|..+|........+.-++...+.|+..+.+ +++..|..+..+.++.+.++
T Consensus 291 ~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~Vv 344 (960)
T KOG1992|consen 291 TATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVV 344 (960)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhc
Confidence 88877776533334444467777889998886 67778877777777766553
No 73
>PRK09687 putative lyase; Provisional
Probab=88.14 E-value=32 Score=35.81 Aligned_cols=213 Identities=15% Similarity=0.073 Sum_probs=111.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHH
Q 003289 7 VKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDS 86 (833)
Q Consensus 7 v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~~lr~~ 86 (833)
+...+..| ...|...|..|-..|.++. .++++..+..++.+ .++.+|.+|+..|-..-... .. ..+....|+.
T Consensus 25 ~~~L~~~L-~d~d~~vR~~A~~aL~~~~-~~~~~~~l~~ll~~--~d~~vR~~A~~aLg~lg~~~-~~-~~~a~~~L~~- 97 (280)
T PRK09687 25 DDELFRLL-DDHNSLKRISSIRVLQLRG-GQDVFRLAIELCSS--KNPIERDIGADILSQLGMAK-RC-QDNVFNILNN- 97 (280)
T ss_pred HHHHHHHH-hCCCHHHHHHHHHHHHhcC-cchHHHHHHHHHhC--CCHHHHHHHHHHHHhcCCCc-cc-hHHHHHHHHH-
Confidence 34445555 5678889999999998775 78889999898864 57889999999988742211 11 1222333332
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhcccccc-CCccchHHHHHhcCC-CCCcHHHHHHHHhhchhhc-cccc---c
Q 003289 87 LNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDW-GGGGIVNWLRDEMNS-HPEFVPGFLELLTVLPEEV-FNYK---I 160 (833)
Q Consensus 87 Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~W-p~~~~~~~l~~~~~~-~~~~~~~~L~iL~~l~Ee~-~~~~---~ 160 (833)
++.+ .....||...+.+|+.+..... .| +. .+..+...+.. ++........-|..+..+- ...- +
T Consensus 98 ---l~~~--D~d~~VR~~A~~aLG~~~~~~~--~~~~~--a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L 168 (280)
T PRK09687 98 ---LALE--DKSACVRASAINATGHRCKKNP--LYSPK--IVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLL 168 (280)
T ss_pred ---HHhc--CCCHHHHHHHHHHHhccccccc--ccchH--HHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Confidence 3232 2345677777777776643221 23 22 33333332221 1112222222222221100 0000 0
Q ss_pred -cCChhHHHHHHHHHHH---HHHHHHHHHHhhhhhh--HHHHHHHHHHHHHhhccCCCCccccccchhHHHHHhccCCcc
Q 003289 161 -AARPERRRQFEKELTS---QMEVALSTLTACLHIN--ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEI 234 (833)
Q Consensus 161 -~~~~~~r~~l~~~l~~---~~~~vl~~l~~~l~~~--~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~~~~L~~~~ 234 (833)
.-...-|..--..|.. ..+.+.+.|...+.++ +++..++..+..+ + ....++.+++.|+++.
T Consensus 169 ~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~---~---------~~~av~~Li~~L~~~~ 236 (280)
T PRK09687 169 KDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALR---K---------DKRVLSVLIKELKKGT 236 (280)
T ss_pred cCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHcc---C---------ChhHHHHHHHHHcCCc
Confidence 0001222222233332 2345666666666553 5777776666431 1 1356677777788777
Q ss_pred hHHHHHHHHHHHH
Q 003289 235 LSEASVNVISELI 247 (833)
Q Consensus 235 ~~~~a~~~l~~ii 247 (833)
++..+++.+.++-
T Consensus 237 ~~~~a~~ALg~ig 249 (280)
T PRK09687 237 VGDLIIEAAGELG 249 (280)
T ss_pred hHHHHHHHHHhcC
Confidence 7766666666554
No 74
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=87.97 E-value=14 Score=35.45 Aligned_cols=146 Identities=11% Similarity=0.144 Sum_probs=80.2
Q ss_pred HHHHHHHhhcccCccccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCH-HHH
Q 003289 473 ALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTA 551 (833)
Q Consensus 473 al~~l~~i~e~~~~~~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~ 551 (833)
++-+++-++-..+.--+++++.+...|.. .+|.||++++.++..+.. .+.- ..=+.++.-++..+.+++ .|+
T Consensus 8 ~i~~l~DL~~r~~~~ve~~~~~l~~~L~D--~~~~VR~~al~~Ls~Li~---~d~i--k~k~~l~~~~l~~l~D~~~~Ir 80 (178)
T PF12717_consen 8 AIIALGDLCIRYPNLVEPYLPNLYKCLRD--EDPLVRKTALLVLSHLIL---EDMI--KVKGQLFSRILKLLVDENPEIR 80 (178)
T ss_pred HHHHHHHHHHhCcHHHHhHHHHHHHHHCC--CCHHHHHHHHHHHHHHHH---cCce--eehhhhhHHHHHHHcCCCHHHH
Confidence 33344444433332224456666665542 379999999999998743 2211 122333333444455543 599
Q ss_pred HHHHHHHHHHHHH-hhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCC-hHHHHHHHHHhhhhhH
Q 003289 552 AAAALAFRHICDD-CRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP-QVDAKKALEMLCLPVV 628 (833)
Q Consensus 552 ~~A~~al~~l~~~-~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~-~~~~~~~l~~l~~p~~ 628 (833)
..|...|..+... .+..+...++.++..+......+.....+.+.+..+|+-+ +..++ ++......+.++.-+.
T Consensus 81 ~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fl---l~~i~~d~~~~~l~~kl~~~~~ 156 (178)
T PF12717_consen 81 SLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFL---LDFIDKDKQKESLVEKLCQRFL 156 (178)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHH---HHHcCcHHHHHHHHHHHHHHHH
Confidence 9999999999877 4555656666666655443221100024566677777666 45554 3333355555554443
No 75
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=87.01 E-value=5.2 Score=38.10 Aligned_cols=88 Identities=17% Similarity=0.110 Sum_probs=64.4
Q ss_pred HHHHHHHHhccCCCH-HHHHHHHHHHHHHHHH-hhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcC
Q 003289 534 ASVLSILTSGMSTSE-DTAAAAALAFRHICDD-CRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 611 (833)
Q Consensus 534 ~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~-~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~ 611 (833)
...|+.++.|+.+.+ +.+--|-.++..+.+. ..+.+.|.+++++.-+...+++ -+.+.....++++..++.+.
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~t-----r~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNT-----RDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHhh
Confidence 456667777776543 3778888899999888 7788999999999999999985 34677888888888775553
Q ss_pred Ch--HHHHHHHHHhhhh
Q 003289 612 PQ--VDAKKALEMLCLP 626 (833)
Q Consensus 612 ~~--~~~~~~l~~l~~p 626 (833)
+- +...+|+.+++.+
T Consensus 112 ~~vG~aLvPyyrqLLp~ 128 (183)
T PF10274_consen 112 DMVGEALVPYYRQLLPV 128 (183)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 21 3445666664433
No 76
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=86.82 E-value=61 Score=36.94 Aligned_cols=123 Identities=12% Similarity=0.085 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHH---hh-cCChHHHHHHHHHHHHHHHHhh--hhhhhhHHHHHHHHHHHHhhcCCccHhhhHHHHHH
Q 003289 672 DAIQRLWPIFKAIFD---IR-AWDMRTMESLCRACKYAVRTSK--RFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIK 745 (833)
Q Consensus 672 ~~~~~~~~~l~~il~---~~-~~~~~v~e~~~~~~~~~~~~~~--~~~~~~l~~l~~~l~~~~~~~~~~~~L~~~~~li~ 745 (833)
.-.+++.+++..... .+ ..|++.++++..|+++++..+. .....|+..+++.++-.|..-+...=+.++..+.+
T Consensus 215 ~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE 294 (556)
T PF05918_consen 215 EGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAE 294 (556)
T ss_dssp HHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHH
Confidence 334566666665432 22 4678999999999888765432 22334444444443333333222223455555554
Q ss_pred HhcC--CcchhHHHHHHHHHHHHHHHHhhcccccCCcCCch----HHHHHHHHHHHHhhCCC
Q 003289 746 IFGS--DPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDV----ADDCFLLASRCIRYCPQ 801 (833)
Q Consensus 746 ~fg~--~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~pd~----~~~~f~l~~~~~~~~p~ 801 (833)
.-.. ..+ ..++++.+++.....+ +.....|++ +++++--++++.++.|.
T Consensus 295 ~s~~~~~~d----~~~~L~~i~~~L~~ym---P~~~~~~~l~fs~vEcLL~afh~La~k~p~ 349 (556)
T PF05918_consen 295 LSPFCGAQD----ARQLLPSIFQLLKKYM---PSKKTEPKLQFSYVECLLYAFHQLARKSPN 349 (556)
T ss_dssp HHTT----T----HHHHHHHHHHHHHTTS-------------HHHHHHHHHHHHHHHTT-TH
T ss_pred HcCCCCccc----HHHHHHHHHHHHHHhC---CCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence 3222 211 2233333333222222 223345664 55544445677777775
No 77
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=86.34 E-value=59 Score=36.08 Aligned_cols=213 Identities=10% Similarity=0.119 Sum_probs=129.5
Q ss_pred cHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHhhhh
Q 003289 491 VMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGM--STSEDTAAAAALAFRHICDDCRKK 568 (833)
Q Consensus 491 ~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l--~~~~~v~~~A~~al~~l~~~~~~~ 568 (833)
.+..++.....-. ++..|..++.+++.+.. ..+.. ..+..++..+...+ ..+...+..+-..+.-+++..--.
T Consensus 190 ll~~l~~~~~~~~-~~~~~~~~~~~la~LvN---K~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R 264 (415)
T PF12460_consen 190 LLQSLLNLALSSE-DEFSRLAALQLLASLVN---KWPDD-DDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMR 264 (415)
T ss_pred HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHc---CCCCh-hhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHc
Confidence 3444444433333 47888888888876643 32221 25667776665544 222225666666666666654434
Q ss_pred hhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCCh-------HHHH-HHHHHhhhhhHHHHHHHHhcCCC
Q 003289 569 LCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ-------VDAK-KALEMLCLPVVTPLQEIINQGPE 640 (833)
Q Consensus 569 l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~-------~~~~-~~l~~l~~p~~~~l~~~~~~~~~ 640 (833)
-.|....+++.+..++.. .+....+-++.+.++.-.++ ...+ =|-++++.-++..+.+-......
T Consensus 265 ~~~~~~~~~~~L~~lL~~-------~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~ 337 (415)
T PF12460_consen 265 GHPLATELLDKLLELLSS-------PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD 337 (415)
T ss_pred CCchHHHHHHHHHHHhCC-------hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh
Confidence 457777788888777753 33457777788777766332 1122 35566666666666554443321
Q ss_pred cccccCchhhhHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 003289 641 ILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAI 720 (833)
Q Consensus 641 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l 720 (833)
..+ ..++..++.+.+.+. .+.+.+.+.+++|++.+.+.. .|.++..++...+..+++.-.+.+.+++..+
T Consensus 338 -----~~k--~~yL~ALs~ll~~vP-~~vl~~~l~~LlPLLlqsL~~--~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sL 407 (415)
T PF12460_consen 338 -----EIK--SNYLTALSHLLKNVP-KSVLLPELPTLLPLLLQSLSL--PDADVLLSSLETLKMILEEAPELISEHLSSL 407 (415)
T ss_pred -----hhH--HHHHHHHHHHHhhCC-HHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 012 236788888888763 234456778999998887743 4567888888888888876655666667666
Q ss_pred HHHHH
Q 003289 721 LEEIQ 725 (833)
Q Consensus 721 ~~~l~ 725 (833)
+..++
T Consensus 408 I~~LL 412 (415)
T PF12460_consen 408 IPRLL 412 (415)
T ss_pred HHHHH
Confidence 66544
No 78
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=85.59 E-value=4.1 Score=38.33 Aligned_cols=76 Identities=12% Similarity=0.136 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcC
Q 003289 507 QLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNG 586 (833)
Q Consensus 507 ~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~ 586 (833)
-+|+++.+++...-+-...+- -+..++..+..|+.+..+++.-+..-+.+++..+...+.+.++.+.+.+...++.
T Consensus 42 elRK~ayE~lytlLd~~~~~~----~~~~~~~~v~~GL~D~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~ 117 (169)
T PF08623_consen 42 ELRKAAYECLYTLLDTCLSRI----DISEFLDRVEAGLKDEHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSK 117 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCSSS-----HHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHhC----CHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhc
Confidence 699999999988765333322 4677788899999986679999999999999999999999999999999888864
No 79
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=85.20 E-value=44 Score=36.50 Aligned_cols=176 Identities=15% Similarity=0.130 Sum_probs=103.6
Q ss_pred HHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCH--HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCC
Q 003289 514 LTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE--DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLK 591 (833)
Q Consensus 514 ~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~--~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~ 591 (833)
.+-|.|+-|=+ +...+|..++.-+++.+ ..+..|-+.++++|+.-+..|..+.+.-+..+.+.-..
T Consensus 315 ~~e~sfsvWeq-------~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~d----- 382 (516)
T KOG2956|consen 315 LCEGSFSVWEQ-------HFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKD----- 382 (516)
T ss_pred HHccchhHHHH-------HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhC-----
Confidence 34455666655 45555656666666632 36778888899999888888887777655555444332
Q ss_pred CCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHH
Q 003289 592 VSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVA 671 (833)
Q Consensus 592 l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 671 (833)
-..+.....-|++..++++..+.... ..+.|++ ..++ ..+. ...++++..+|..++ .+...
T Consensus 383 s~~~v~~~Aeed~~~~las~~P~~~I----~~i~~~I-------lt~D------~~~~-~~~iKm~Tkl~e~l~-~EeL~ 443 (516)
T KOG2956|consen 383 SQDEVMRVAEEDCLTTLASHLPLQCI----VNISPLI-------LTAD------EPRA-VAVIKMLTKLFERLS-AEELL 443 (516)
T ss_pred CchhHHHHHHHHHHHHHHhhCchhHH----HHHhhHH-------hcCc------chHH-HHHHHHHHHHHhhcC-HHHHH
Confidence 12333444555555555553222111 1223322 2211 1222 337899999999885 23444
Q ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHH
Q 003289 672 DAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSK-RFMGITIGAILE 722 (833)
Q Consensus 672 ~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~~~-~~~~~~l~~l~~ 722 (833)
..+..+.|.+.+.... .+..|+-.+..|+-.++..+| ..+.|++..+-.
T Consensus 444 ~ll~diaP~~iqay~S--~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~ 493 (516)
T KOG2956|consen 444 NLLPDIAPCVIQAYDS--TSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTS 493 (516)
T ss_pred HhhhhhhhHHHHHhcC--chHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccH
Confidence 5556666666544332 345777778888888888888 778888876543
No 80
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.98 E-value=70 Score=35.67 Aligned_cols=90 Identities=11% Similarity=0.017 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHH-hhhhhhcCHHHHHHHHHHHhcCc-CCCCCCHhhHHHHHHHHHHHHhc-CChHHHHHHHHHhhhh
Q 003289 550 TAAAAALAFRHICDD-CRKKLCGYLDGLYNVYRTAVNGE-GSLKVSAEDSLHLVEALSMVITE-LPQVDAKKALEMLCLP 626 (833)
Q Consensus 550 v~~~A~~al~~l~~~-~~~~l~~~l~~ll~~l~~~l~~~-~~~~l~~~~~~~l~eai~~vi~~-~~~~~~~~~l~~l~~p 626 (833)
+..-|-.++..++++ -+..++..-+.+++..+.+.+.. ...-.++..+..+|.++...=-+ +..++..++....+.|
T Consensus 313 L~~Da~q~l~~lVe~~~~~~vvv~~e~~~~laeq~~s~~~~l~i~s~p~~~~lmkaLvl~gfa~~d~e~~~n~~~~~Lqp 392 (748)
T KOG4541|consen 313 LVPDALQSLFVLVEEANNHPVVVLSESIIKLAEQCLSAEMRLSIFSPPLMEALMKALVLWGFAYLDLEEECNLGSNKLQP 392 (748)
T ss_pred hhHHHHHHHHHHHHHhccCCeeeccHHHHHHHHHHhccCCcccccCchHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccc
Confidence 555555556666655 34445555556666666665532 11134567889999998765333 4445566888899999
Q ss_pred hHHHHHHHHhcCC
Q 003289 627 VVTPLQEIINQGP 639 (833)
Q Consensus 627 ~~~~l~~~~~~~~ 639 (833)
+-+++-...++++
T Consensus 393 L~~Rf~~~~nq~~ 405 (748)
T KOG4541|consen 393 LPSRFFTYFNQHN 405 (748)
T ss_pred cHHHHHHHhcccc
Confidence 9999888888765
No 81
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.87 E-value=85 Score=36.55 Aligned_cols=68 Identities=10% Similarity=0.089 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHH
Q 003289 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYR 581 (833)
Q Consensus 505 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~ 581 (833)
+..+|..+++++.++- .|+ ++.+.++.+..++.|+. -||..|-.|+..+=.. ..+|.|..+.++..+.
T Consensus 112 NEyiRG~TLRFLckLk-----E~E---Llepl~p~IracleHrhsYVRrNAilaifsIyk~-~~~L~pDapeLi~~fL 180 (948)
T KOG1058|consen 112 NEYIRGSTLRFLCKLK-----EPE---LLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEHLIPDAPELIESFL 180 (948)
T ss_pred hHhhcchhhhhhhhcC-----cHH---HhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-hhhhcCChHHHHHHHH
Confidence 4489999999999864 365 89999999999998865 4999999998888655 5678888888876654
No 82
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=84.56 E-value=52 Score=33.82 Aligned_cols=141 Identities=13% Similarity=0.121 Sum_probs=90.2
Q ss_pred CCCcchhhHHHHHHHHhhcccCcc--ccccHHHHHhhcc-CCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHH
Q 003289 464 HNEWRPAEAALFCIRAISTYVSVV--EAEVMPQVMALLP-KLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 540 (833)
Q Consensus 464 ~~~w~~~Eaal~~l~~i~e~~~~~--~~~~l~~l~~~l~-~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l 540 (833)
+.++..++-|+.+++.+-+.++.+ ....+.-+++++. ++.+|+.+..+ +..+.+..+. ...+. .....++..+
T Consensus 10 sed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~-l~gl~~L~~~-~~~~~--~~~~~i~~~l 85 (262)
T PF14500_consen 10 SEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPA-LKGLLALVKM-KNFSP--ESAVKILRSL 85 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHH-HHHHHHHHhC-cCCCh--hhHHHHHHHH
Confidence 467888999999999999998864 2334556666654 56555544333 4444333321 11111 2566777777
Q ss_pred HhccCCCH---HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCC
Q 003289 541 TSGMSTSE---DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 612 (833)
Q Consensus 541 ~~~l~~~~---~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~ 612 (833)
++..+.+. ..|..+-.-+..+.+..+..+...-+.++..+.+...++ -++..-..+++-+-.++...+
T Consensus 86 ~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gE----kDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 86 FQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGE----KDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccC----CCHHHHHHHHHHHHHHHHhcc
Confidence 76665432 467777777778888777777766677887777777764 356677777777776767665
No 83
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=83.24 E-value=92 Score=35.69 Aligned_cols=219 Identities=10% Similarity=0.074 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhh-hhcCHHHH-HHHHH
Q 003289 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKK-LCGYLDGL-YNVYR 581 (833)
Q Consensus 505 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~-~~v~~~A~~al~~l~~~~~~~-l~~~l~~l-l~~l~ 581 (833)
.+.+....+.-+.....++..+|. ++..++..++..=... ..++..|-..+..+|....+. +.|-+-.. +..+.
T Consensus 255 ~te~~~~~L~~l~~l~~~~~~f~k---~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~ 331 (661)
T KOG2256|consen 255 DTEVLAFTLRHLTVLVPFLATFPK---LLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVR 331 (661)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 455666666677777778887775 6666666654322222 238888888888898766543 33332222 22222
Q ss_pred HH-hcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccC-chhhhHHHHHHHH
Q 003289 582 TA-VNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKH-PRDLTVHIDRFAY 659 (833)
Q Consensus 582 ~~-l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~l~~ 659 (833)
+. ..+++ .++ -...+-.++.-+.+- .......+.-.++..+.-.|++.+......+-+.. .=.++.+++....
T Consensus 332 nsk~~~~~--tl~--~i~Fl~~slvEL~~l-d~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~r 406 (661)
T KOG2256|consen 332 NSKFVTVN--TLP--LINFLQNSLVELLGL-DLQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLR 406 (661)
T ss_pred hCCCCCCc--ccc--hhHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 22 11111 121 112333333333332 22223333333445555555666655432110100 0123345555555
Q ss_pred hhhccCCc-ccHHHHHHHHHHHHHHHHHhh--cCChHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH-HHhhcC
Q 003289 660 IFRYVNHP-EAVADAIQRLWPIFKAIFDIR--AWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQG-LYQQHQ 732 (833)
Q Consensus 660 ~~~~~~~~-~~~~~~~~~~~~~l~~il~~~--~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~~ 732 (833)
+++..+++ .+..+..--+.++..-+.... +....++=.+|+.+.+..++-|. +.|+.|.+++.+-. .++..|
T Consensus 407 visf~~~~~s~lq~LvYpLvQvi~GvirLipT~qy~PLRlhcir~Li~Ls~ssg~-fIPi~~ll~Eml~~~~~nrkp 482 (661)
T KOG2256|consen 407 VISFANGSASQLQPLVYPLVQVILGVIRLIPTPQYYPLRLHCIRSLISLSRSSGT-FIPLSPLLVEMLKSVTFNRKP 482 (661)
T ss_pred HHHHhhccHhhhhhhhhHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHhhcCc-eeecHHHHHHHHHHhhccCCc
Confidence 54422221 111111111111221222222 23456666777777776665444 45777777777644 344444
No 84
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=82.47 E-value=27 Score=30.24 Aligned_cols=99 Identities=12% Similarity=0.179 Sum_probs=58.9
Q ss_pred HHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 003289 621 EMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCR 700 (833)
Q Consensus 621 ~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~ 700 (833)
+.-+-.+++.+...+..... +.....-...+..++.+++.++ ..+..+..|++-.+...++. +++.+.+++
T Consensus 6 ~~~~Lgil~~f~~~l~d~~~---~~~~~ek~~~l~si~~lI~~~~--~~i~~~~pQI~a~L~sal~~----~~l~~~al~ 76 (107)
T PF08064_consen 6 QPHILGILTRFSDVLNDLRG---KKPIPEKKRALRSIEELIKLGG--SHISSARPQIMACLQSALEI----PELREEALS 76 (107)
T ss_pred HHHHHHHHHHHHHHHhcccc---CCCHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHhCC----hhhHHHHHH
Confidence 33334444555555554211 0112223446777777777332 33445556666666666543 589999999
Q ss_pred HHHHHHHHhh-hhhhhhHHHHHHHHHHHH
Q 003289 701 ACKYAVRTSK-RFMGITIGAILEEIQGLY 728 (833)
Q Consensus 701 ~~~~~~~~~~-~~~~~~l~~l~~~l~~~~ 728 (833)
++...++.++ ..+.|+++.++..+...+
T Consensus 77 ~W~~fi~~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 77 CWNCFIKTLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHhc
Confidence 9999998865 456777777766655443
No 85
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=82.20 E-value=41 Score=32.22 Aligned_cols=108 Identities=9% Similarity=0.039 Sum_probs=64.0
Q ss_pred HhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHH
Q 003289 594 AEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADA 673 (833)
Q Consensus 594 ~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 673 (833)
+..|..++-++|-+....| .+++|.+..+..++..... ..|. .++.+++.++...- ..+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~---------~~ve~~~~~l~~~L~D~~~-----~VR~--~al~~Ls~Li~~d~-----ik~ 60 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYP---------NLVEPYLPNLYKCLRDEDP-----LVRK--TALLVLSHLILEDM-----IKV 60 (178)
T ss_pred HHHHHHHHHHHHHHHHhCc---------HHHHhHHHHHHHHHCCCCH-----HHHH--HHHHHHHHHHHcCc-----eee
Confidence 3467888889988877765 4666777667777664431 2333 36777887765421 001
Q ss_pred HHHH-HHHHHHHHHhhcCChHHHHHHHHHHHHHHHH-hhhhhhhhHHHHHHHHH
Q 003289 674 IQRL-WPIFKAIFDIRAWDMRTMESLCRACKYAVRT-SKRFMGITIGAILEEIQ 725 (833)
Q Consensus 674 ~~~~-~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~-~~~~~~~~l~~l~~~l~ 725 (833)
-.++ ..++. .+ -..+++|++.+..++...... -+..+...+|.++..+.
T Consensus 61 k~~l~~~~l~-~l--~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~ 111 (178)
T PF12717_consen 61 KGQLFSRILK-LL--VDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLN 111 (178)
T ss_pred hhhhhHHHHH-HH--cCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 1122 22222 22 245789999999999987766 33345566666665443
No 86
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=81.44 E-value=15 Score=43.19 Aligned_cols=167 Identities=16% Similarity=0.156 Sum_probs=93.0
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhhhhhh--cC-----------HHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHH
Q 003289 539 ILTSGMSTSEDTAAAAALAFRHICDDCRKKLC--GY-----------LDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALS 605 (833)
Q Consensus 539 ~l~~~l~~~~~v~~~A~~al~~l~~~~~~~l~--~~-----------l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~ 605 (833)
-++..+..|+ +..+|+++|.-+..+|...+. .| ..++...+...+. ..+...+....++++
T Consensus 819 klld~Ls~~~-~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~-----t~~~~~K~~yl~~Ls 892 (1030)
T KOG1967|consen 819 KLLDLLSGPS-TGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFE-----TAPGSQKHNYLEALS 892 (1030)
T ss_pred HHHHhcCCcc-ccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhc-----cCCccchhHHHHHHH
Confidence 3445677788 899999999999888765443 22 2223333333332 244567899999999
Q ss_pred HHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccH-HHHHHHHHHHHHHH
Q 003289 606 MVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAV-ADAIQRLWPIFKAI 684 (833)
Q Consensus 606 ~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~i 684 (833)
+|+..+|-....+-+..++ .++-++.+-++- .. ....++++.....-. ++. ......+.|.+..+
T Consensus 893 hVl~~vP~~vllp~~~~Ll--------PLLLq~Ls~~D~-~v--~vstl~~i~~~l~~~---~tL~t~~~~Tlvp~lLsl 958 (1030)
T KOG1967|consen 893 HVLTNVPKQVLLPQFPMLL--------PLLLQALSMPDV-IV--RVSTLRTIPMLLTES---ETLQTEHLSTLVPYLLSL 958 (1030)
T ss_pred HHHhcCCHHhhccchhhHH--------HHHHHhcCCCcc-ch--hhhHhhhhhHHHHhc---cccchHHHhHHHHHHHhc
Confidence 9999999644444444333 322222221110 01 122344444433321 222 22345566666655
Q ss_pred HHhhcCC-hHHHHHHHHHHHHHHH-HhhhhhhhhHHHHHHHHH
Q 003289 685 FDIRAWD-MRTMESLCRACKYAVR-TSKRFMGITIGAILEEIQ 725 (833)
Q Consensus 685 l~~~~~~-~~v~e~~~~~~~~~~~-~~~~~~~~~l~~l~~~l~ 725 (833)
-....++ ..|++.+..++....+ .+.+...||-|.++..+.
T Consensus 959 s~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~ 1001 (1030)
T KOG1967|consen 959 SSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALI 1001 (1030)
T ss_pred CCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhh
Confidence 4333333 5667888888876665 355666777776665443
No 87
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=80.61 E-value=86 Score=33.55 Aligned_cols=269 Identities=9% Similarity=0.054 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHH---
Q 003289 507 QLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRT--- 582 (833)
Q Consensus 507 ~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~--- 582 (833)
.-++-+..+|++|.++| |+ +-..++..=+....+.+ .++.+|-+.+-.||++ ...+.+.+.+..+.+
T Consensus 39 k~k~lasq~ip~~fk~f---p~---la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~---d~~~rv~d~l~qLLnk~s 109 (460)
T KOG2213|consen 39 KEKRLASQFIPRFFKHF---PS---LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG---DALSRVNDVLVQLLNKAS 109 (460)
T ss_pred HHHHHHHHHHHHHHhhC---ch---hhhHHHHhhhccccccchhhHHHHHhccchhccC---chhhhhHHHHHHHHHHHH
Confidence 34455566777665444 43 55566665555444443 4899999999999987 233333333322222
Q ss_pred ---HhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHH
Q 003289 583 ---AVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAY 659 (833)
Q Consensus 583 ---~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 659 (833)
++.. ...-+...|+++..-|..=+-.++.+-..+-++.. +++.+...+..-. .......++.++.
T Consensus 110 l~~Lf~~--~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~---iv~eikkal~dVt-------geef~lfm~~L~~ 177 (460)
T KOG2213|consen 110 LTGLFGQ--IEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERH---IVDEIKKALEDVT-------GEEFTLFMDILAS 177 (460)
T ss_pred HHHHHhh--hhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHH---HHHHHHHHHHhcc-------HHHHHHHHHHHHh
Confidence 2221 11124456677766666555555554333322222 2222233332211 1122334555554
Q ss_pred hhhccCCcccHHHHHHHHHHHHHHHHHh--h-cCChHHHHHHHHHHHHHHHHhhh--hhhhhHHHHHHHHHHH-HhhcCC
Q 003289 660 IFRYVNHPEAVADAIQRLWPIFKAIFDI--R-AWDMRTMESLCRACKYAVRTSKR--FMGITIGAILEEIQGL-YQQHQQ 733 (833)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~l~~il~~--~-~~~~~v~e~~~~~~~~~~~~~~~--~~~~~l~~l~~~l~~~-~~~~~~ 733 (833)
+ +.+++..+ .+-++++....+..-.. | ..|++.+++...|+.-++--+.. ...-|+..+...++-. |...+.
T Consensus 178 l-k~~~~k~~-~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e 255 (460)
T KOG2213|consen 178 L-KSLQTKAG-EARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTE 255 (460)
T ss_pred h-hcccCCCC-HHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchH
Confidence 3 33332212 12234444444333222 4 35788999888887765543211 1112222222222211 221112
Q ss_pred ccHhhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHH----HHHHhhCCCcc
Q 003289 734 PCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLA----SRCIRYCPQLF 803 (833)
Q Consensus 734 ~~~L~~~~~li~~fg~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~----~~~~~~~p~~~ 803 (833)
.-=|+++..+.+..... ..+...+++..+++-...... ..+.-|+.-..|.+++ +...++.|...
T Consensus 256 ~rkL~lLK~lAEMss~t--taq~a~q~Lpsi~elLk~yMp---a~kt~ee~~fsyvEClly~~h~Lg~k~pn~t 324 (460)
T KOG2213|consen 256 ERKLDLLKALAEMSSYT--TAQAARQMLPSIVELLKEYMP---APKTGEEMQFSYVECLLYALHHLGHKKPNFT 324 (460)
T ss_pred HHHHHHHHHHHHhCccc--hHHHHHHHHHHHHHHHHHhcc---cCCccHHHHHHHHHHHHHHHHHHhhcCcchh
Confidence 23367777777765544 445566666665554333222 2344444444444433 33333455443
No 88
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.57 E-value=95 Score=36.78 Aligned_cols=188 Identities=8% Similarity=0.029 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHhchHHHhhC-CCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHH
Q 003289 506 PQLLQTVCLTIGAYSKWFDAA-SSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTA 583 (833)
Q Consensus 506 ~~v~~t~~~~ig~y~~~l~~~-p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~ 583 (833)
+.++..++..+. +|+... +........++.+++..+.+.+ -|-..|-.++..+|+--.+.+.|. +.+.+.+.
T Consensus 741 vpik~~gL~~l~---~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~d---L~e~Y~s~ 814 (982)
T KOG4653|consen 741 VPIKGYGLQMLR---HLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPD---LSEEYLSE 814 (982)
T ss_pred ccchHHHHHHHH---HHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHH---HHHHHHhc
Confidence 456666666655 455532 2112356778888877776654 277888888889998755555433 33333222
Q ss_pred hcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhc
Q 003289 584 VNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRY 663 (833)
Q Consensus 584 l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 663 (833)
- .+...+.+..+=|+++.++.+.+ +....+..++++.....+..+ + .+.....+..+|.+...
T Consensus 815 k-----~k~~~d~~lkVGEai~k~~qa~G-----el~~~y~~~Li~tfl~gvrep----d---~~~RaSS~a~lg~Lcq~ 877 (982)
T KOG4653|consen 815 K-----KKLQTDYRLKVGEAILKVAQALG-----ELVFKYKAVLINTFLSGVREP----D---HEFRASSLANLGQLCQL 877 (982)
T ss_pred c-----cCCCccceehHHHHHHHHHHHhc-----cHHHHHHHHHHHHHHHhcCCc----h---HHHHHhHHHHHHHHHHH
Confidence 1 13346788889999999998864 333334444444444333322 1 12233455556655554
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 003289 664 VNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGA 719 (833)
Q Consensus 664 ~~~~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~ 719 (833)
... .+..++-++...+.++.+ -..++-++.++..++...+...|..+.|++..
T Consensus 878 ~a~--~vsd~~~ev~~~Il~l~~-~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~ 930 (982)
T KOG4653|consen 878 LAF--QVSDFFHEVLQLILSLET-TDGSVLVRRAAVHLLAELLNGTGEDLLPILRL 930 (982)
T ss_pred Hhh--hhhHHHHHHHHHHHHHHc-cCCchhhHHHHHHHHHHHHhccchhhHHHHHH
Confidence 321 122233344333333322 25667888999999999999889888776654
No 89
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=80.48 E-value=7.2 Score=40.28 Aligned_cols=136 Identities=16% Similarity=0.173 Sum_probs=85.3
Q ss_pred chhhHHHHHHHHhhcccCcc-----ccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCC-hhhHHHHHHHHH
Q 003289 468 RPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSD-PSILASVLSILT 541 (833)
Q Consensus 468 ~~~Eaal~~l~~i~e~~~~~-----~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~-~~~l~~~l~~l~ 541 (833)
.-+|-++|+++.|+..-+.- ....+..++..+.+-..|..+.+++-|+++.+++ ..+|.- -..+..+++.|.
T Consensus 172 ~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR--GknP~P~w~~isqalpiL~ 249 (526)
T COG5064 172 DVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR--GKNPPPDWSNISQALPILA 249 (526)
T ss_pred HHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC--CCCCCCchHHHHHHHHHHH
Confidence 44788999999987654322 1245666777665444488899999999999876 344431 146777888777
Q ss_pred hcc--CCCHHHHHHHHHHHHHHHHHhhhhhhcCHHH-HHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcC
Q 003289 542 SGM--STSEDTAAAAALAFRHICDDCRKKLCGYLDG-LYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 611 (833)
Q Consensus 542 ~~l--~~~~~v~~~A~~al~~l~~~~~~~l~~~l~~-ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~ 611 (833)
+-+ .+++ |-.-|+.|+..+.+...+.+.-.++. +...+..++..+ + ...+.-++.++|.++..-
T Consensus 250 KLiys~D~e-vlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~-s----a~iqtPalR~vGNIVTG~ 316 (526)
T COG5064 250 KLIYSRDPE-VLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE-S----AKIQTPALRSVGNIVTGS 316 (526)
T ss_pred HHHhhcCHH-HHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc-c----ccccCHHHHhhcCeeecC
Confidence 655 3566 88999999999986543333222111 223344444432 1 223556777888877663
No 90
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.25 E-value=1.4e+02 Score=35.33 Aligned_cols=159 Identities=13% Similarity=0.116 Sum_probs=85.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhh-----cCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHH-HH
Q 003289 546 TSEDTAAAAALAFRHICDDCRKKLC-----GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK-KA 619 (833)
Q Consensus 546 ~~~~v~~~A~~al~~l~~~~~~~l~-----~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~-~~ 619 (833)
+++ +...||+|+..+|+-|++... .-++.|++.++.+- . .+.-+..++|+=.+-..=|.+-.+ ..
T Consensus 225 n~D-IMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~Ie------y--iDvAEQ~LqALE~iSR~H~~AiL~AG~ 295 (1051)
T KOG0168|consen 225 NFD-IMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIE------Y--IDVAEQSLQALEKISRRHPKAILQAGA 295 (1051)
T ss_pred cHH-HHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhh------h--hHHHHHHHHHHHHHHhhccHHHHhccc
Confidence 345 999999999999999976543 24666777765541 2 234455555655444433322211 11
Q ss_pred HHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHhhcCChHHHHHHH
Q 003289 620 LEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLC 699 (833)
Q Consensus 620 l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~ 699 (833)
+...+. .+.-+... ++ ..+|...+.+.+.+. ++. ..++-+..|++..+++. .|...+|.+|
T Consensus 296 l~a~Ls-ylDFFSi~------------aQ--R~AlaiaaN~Cksi~-sd~-f~~v~ealPlL~~lLs~--~D~k~ies~~ 356 (1051)
T KOG0168|consen 296 LSAVLS-YLDFFSIH------------AQ--RVALAIAANCCKSIR-SDE-FHFVMEALPLLTPLLSY--QDKKPIESVC 356 (1051)
T ss_pred HHHHHH-HHHHHHHH------------HH--HHHHHHHHHHHhcCC-Ccc-chHHHHHHHHHHHHHhh--ccchhHHHHH
Confidence 111111 11111000 11 114444555555443 222 23445778999988875 4568899999
Q ss_pred HHHHHHHHHhhh--hhhhhH--HHHHHHHHHHHhhcC
Q 003289 700 RACKYAVRTSKR--FMGITI--GAILEEIQGLYQQHQ 732 (833)
Q Consensus 700 ~~~~~~~~~~~~--~~~~~l--~~l~~~l~~~~~~~~ 732 (833)
.++-+++..+.+ .....+ +.+++.+.+....++
T Consensus 357 ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~ 393 (1051)
T KOG0168|consen 357 ICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTP 393 (1051)
T ss_pred HHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCc
Confidence 999998887533 222211 345555555554444
No 91
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=78.84 E-value=1.5e+02 Score=36.66 Aligned_cols=95 Identities=16% Similarity=0.120 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhh----hhhcCHHHHHHH
Q 003289 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRK----KLCGYLDGLYNV 579 (833)
Q Consensus 505 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~----~l~~~l~~ll~~ 579 (833)
.+..+..+++++..++.++...- .+..++++++..+.++. +||..|-.++.++....++ .-.-|.+-|+..
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~----~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~ 511 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEV----KLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPH 511 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHH----HHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhh
Confidence 35678889999999999888764 79999999999998875 5777776666666543332 112344555566
Q ss_pred HHHHhcCcCCCCCCHhhHHHHHHHHHHH
Q 003289 580 YRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (833)
Q Consensus 580 l~~~l~~~~~~~l~~~~~~~l~eai~~v 607 (833)
+..++.. ......|.-.-+.++.+
T Consensus 512 L~~l~~d----~~~~~vRiayAsnla~L 535 (1431)
T KOG1240|consen 512 LNHLLND----SSAQIVRIAYASNLAQL 535 (1431)
T ss_pred hHhhhcc----CccceehhhHHhhHHHH
Confidence 6655542 12233445444555544
No 92
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=78.73 E-value=17 Score=29.69 Aligned_cols=87 Identities=22% Similarity=0.197 Sum_probs=58.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHH
Q 003289 8 KEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSL 87 (833)
Q Consensus 8 ~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~~lr~~L 87 (833)
...++.+-..+|+..|..|-..|.++. ++++-.....++. +.++.+|..|+..|... . . ......|
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l~--d~~~~vr~~a~~aL~~i-~-------~---~~~~~~L 67 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG-DPEAIPALIELLK--DEDPMVRRAAARALGRI-G-------D---PEAIPAL 67 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT-HHHHHHHHHHHHT--SSSHHHHHHHHHHHHCC-H-------H---HHTHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHc--CCCHHHHHHHHHHHHHh-C-------C---HHHHHHH
Confidence 445666656789999999999999775 6788888888885 46788999999999843 1 1 1233334
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHH
Q 003289 88 NTLLKKFHKGPPKVRTQISIAVA 110 (833)
Q Consensus 88 l~~l~~~~~~~~~v~~kL~~~la 110 (833)
.+++.+ .....||.....+|+
T Consensus 68 ~~~l~~--~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 68 IKLLQD--DDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHTC---SSHHHHHHHHHHHH
T ss_pred HHHHcC--CCcHHHHHHHHhhcC
Confidence 444333 124556776666664
No 93
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=78.64 E-value=5.1 Score=35.07 Aligned_cols=107 Identities=16% Similarity=0.166 Sum_probs=57.1
Q ss_pred cHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCC---hhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 003289 491 VMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSD---PSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRK 567 (833)
Q Consensus 491 ~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~---~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~~ 567 (833)
.++.+++.+.. .++.++..++.+++.++.-....... ...++.+++.+.. ++++ ++..|+.++.+++.....
T Consensus 8 ~i~~l~~~l~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~-v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 8 GLPALVSLLSS--SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS--EDEE-VVKAALWALRNLAAGPED 82 (120)
T ss_pred ChHHHHHHHHc--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC--CCHH-HHHHHHHHHHHHccCcHH
Confidence 45555665542 25889999999999887531110000 0145555554432 2334 999999999999976533
Q ss_pred hhhcCH-HHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHH
Q 003289 568 KLCGYL-DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (833)
Q Consensus 568 ~l~~~l-~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~v 607 (833)
...-.. ..++..+.+++.. -+.+.+.....+++.+
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~-----~~~~~~~~a~~~l~~l 118 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDS-----SNEDIQKNATGALSNL 118 (120)
T ss_pred HHHHHHHCCChHHHHHHHhc-----CCHHHHHHHHHHHHHh
Confidence 211111 1234444444442 1344555555555443
No 94
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=77.82 E-value=46 Score=28.82 Aligned_cols=71 Identities=11% Similarity=0.235 Sum_probs=47.9
Q ss_pred hHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHH
Q 003289 651 TVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSK-RFMGITIGAILEEIQGL 727 (833)
Q Consensus 651 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~~~-~~~~~~l~~l~~~l~~~ 727 (833)
...+..|+.+++..+ +.+..+..|++-.+...++ .+++.+.+++++...++.+. .++.|++..++..+.+.
T Consensus 33 ~~~i~ai~~lI~~~g--~~i~~a~pQI~acL~saL~----~~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i~~~ 104 (107)
T smart00802 33 KRALRSIGFLIKLMG--KHISSALPQIMACLQSALE----IPELRSLALRCWHVLIKTLKEEELGPLLDQIFAAILPL 104 (107)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhC----chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 446777777777432 2344455677777766654 47899999999999888864 45667777666655543
No 95
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=77.81 E-value=21 Score=29.97 Aligned_cols=74 Identities=9% Similarity=0.141 Sum_probs=53.8
Q ss_pred ccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHH
Q 003289 543 GMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALE 621 (833)
Q Consensus 543 ~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~ 621 (833)
-+++|. ++|.+|-..++++++... .-...++.++..+...+..+ ++..-..++.+++.++...|.+-....++
T Consensus 11 ~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~-----DsyVYL~aI~~L~~La~~~p~~vl~~L~~ 84 (92)
T PF10363_consen 11 DLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDE-----DSYVYLNAIKGLAALADRHPDEVLPILLD 84 (92)
T ss_pred HccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCC-----CchHHHHHHHHHHHHHHHChHHHHHHHHH
Confidence 345653 499999999999998755 33456788888888877753 34567889999999999887644444444
Q ss_pred H
Q 003289 622 M 622 (833)
Q Consensus 622 ~ 622 (833)
.
T Consensus 85 ~ 85 (92)
T PF10363_consen 85 E 85 (92)
T ss_pred H
Confidence 3
No 96
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=77.36 E-value=64 Score=30.29 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChH
Q 003289 573 LDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV 614 (833)
Q Consensus 573 l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~ 614 (833)
-+.+++.+..++.+. -+.+-|..+++.+| +++++++-
T Consensus 8 yP~LL~~L~~iLk~e----~s~~iR~E~lr~lG-ilGALDP~ 44 (160)
T PF11865_consen 8 YPELLDILLNILKTE----QSQSIRREALRVLG-ILGALDPY 44 (160)
T ss_pred hHHHHHHHHHHHHhC----CCHHHHHHHHHHhh-hccccCcH
Confidence 356888888888763 34678999999999 56776543
No 97
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=77.17 E-value=74 Score=33.19 Aligned_cols=74 Identities=18% Similarity=0.286 Sum_probs=58.8
Q ss_pred hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhh--hhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHh
Q 003289 532 ILASVLSILTSGMSTSEDTAAAAALAFRHICDDCR--KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVIT 609 (833)
Q Consensus 532 ~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~--~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~ 609 (833)
..-+++..|+.+++++.++|.+.-.++..+|.+|+ ..+.|.++.+=+.+.+ ++.+.+++..++.++..++.
T Consensus 104 l~L~vLsnLfn~~d~~~~aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lke-------w~~~vedqrel~r~v~~al~ 176 (378)
T KOG2753|consen 104 LRLQVLSNLFNGVDKPTPARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWLKE-------WNISVEDQRELLRAVHKALK 176 (378)
T ss_pred cHHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcceeeeecccHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHH
Confidence 56677888889999887799999999999999987 4566777766665543 25778999999999998887
Q ss_pred cCC
Q 003289 610 ELP 612 (833)
Q Consensus 610 ~~~ 612 (833)
...
T Consensus 177 ~~k 179 (378)
T KOG2753|consen 177 DNK 179 (378)
T ss_pred hcc
Confidence 643
No 98
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=76.21 E-value=1.1e+02 Score=32.24 Aligned_cols=127 Identities=14% Similarity=0.127 Sum_probs=77.6
Q ss_pred HHHHHHhhcccCcc--ccccHHHHHhhc--cCCC-ChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCH
Q 003289 474 LFCIRAISTYVSVV--EAEVMPQVMALL--PKLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE 548 (833)
Q Consensus 474 l~~l~~i~e~~~~~--~~~~l~~l~~~l--~~l~-~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~ 548 (833)
|+..+.+-+.+... ....+..+++.+ |.+. .++.+|..++.++|-|+-.=.... .++++.++..+-. + +.
T Consensus 4 L~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a--~~~l~l~~~~~~~--~-~~ 78 (298)
T PF12719_consen 4 LSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA--KEHLPLFLQALQK--D-DE 78 (298)
T ss_pred HHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH--HHHHHHHHHHHHh--C-CH
Confidence 44444444444422 123455666653 4543 378999999999998874333211 1244444444412 2 33
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhc---------CHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhc
Q 003289 549 DTAAAAALAFRHICDDCRKKLCG---------YLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (833)
Q Consensus 549 ~v~~~A~~al~~l~~~~~~~l~~---------~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (833)
.|+..|..++..+...-+..... ....+++.+.+.+.. .+.+.+..+.||++.++-.
T Consensus 79 ~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-----~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 79 EVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDS-----ENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHhc
Confidence 49999999999888765433331 234577777777764 2567899999999988755
No 99
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=75.45 E-value=1.4e+02 Score=33.11 Aligned_cols=96 Identities=11% Similarity=0.130 Sum_probs=52.7
Q ss_pred HHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH--HHHHhhhhhhhhHHHHHHHHHHHHh
Q 003289 652 VHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKY--AVRTSKRFMGITIGAILEEIQGLYQ 729 (833)
Q Consensus 652 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~--~~~~~~~~~~~~l~~l~~~l~~~~~ 729 (833)
..++-+..++...+ |.....+...++..+...++ +.+..|.|+++.++.. .+..+.......+|.+++.+....+
T Consensus 274 ~FL~el~~il~~~~-~~~f~~i~~~lf~~la~ci~--S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~ 350 (409)
T PF01603_consen 274 LFLNELEEILEVLP-PEEFQKIMVPLFKRLAKCIS--SPHFQVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSK 350 (409)
T ss_dssp HHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHT--SSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTS
T ss_pred HHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 36677777777553 33444444555555555443 3567899988888773 3443444444455555554333222
Q ss_pred hcCCccHhhhHHHHHHHhcCC
Q 003289 730 QHQQPCFLYLSSEVIKIFGSD 750 (833)
Q Consensus 730 ~~~~~~~L~~~~~li~~fg~~ 750 (833)
.+=....-.++..+...+.+-
T Consensus 351 ~HWn~~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 351 NHWNQTVRNLAQNVLKILMEM 371 (409)
T ss_dssp S-SSTTHHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHHHHh
Confidence 222356666777777776664
No 100
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.65 E-value=54 Score=38.16 Aligned_cols=63 Identities=21% Similarity=0.266 Sum_probs=39.4
Q ss_pred hhhHHHHHHHHHHHHhhcCCccHhhhHHHHHHHhcCCc-chhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHH
Q 003289 714 GITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDP-SCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADD 787 (833)
Q Consensus 714 ~~~l~~l~~~l~~~~~~~~~~~~L~~~~~li~~fg~~~-~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~pd~~~~ 787 (833)
.+-.+.+++.++..|...+...-+.+++..|..|++.+ +..+.+..++.. . ....++||+++.
T Consensus 455 i~~a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~tq~~l~~vL~~----~-------~~d~~~~dlrDr 518 (734)
T KOG1061|consen 455 IENALELLESFLENFKDETAEVQLELLTAAIKLFLKKPTETQELLQGVLPL----A-------TADTDNPDLRDR 518 (734)
T ss_pred cCcHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhh----h-------hccccChhhhhh
Confidence 34456677766676666555566899999999999876 333333333332 1 224677887655
No 101
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=73.32 E-value=2.7e+02 Score=35.54 Aligned_cols=56 Identities=7% Similarity=0.202 Sum_probs=46.7
Q ss_pred ChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHh
Q 003289 504 QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDC 565 (833)
Q Consensus 504 ~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~ 565 (833)
++..||.++++++|+| +..+|+ +.++....+..++.++. .||.++-+-++.+|++.
T Consensus 867 ssasVREAaldLvGrf---vl~~~e---~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~ 923 (1692)
T KOG1020|consen 867 SSASVREAALDLVGRF---VLSIPE---LIFQYYDQIIERILDTGVSVRKRVIKILRDICEET 923 (1692)
T ss_pred chhHHHHHHHHHHhhh---hhccHH---HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC
Confidence 4789999999999987 567776 88888888888887764 59999999999999853
No 102
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=72.45 E-value=12 Score=30.66 Aligned_cols=56 Identities=25% Similarity=0.181 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHH
Q 003289 7 VKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTL 64 (833)
Q Consensus 7 v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L 64 (833)
+...+..+...+|+..|.+|-..|..+. +++++.....++.+ +.+..+|..|+..|
T Consensus 32 ~~~~L~~~l~d~~~~vr~~a~~aL~~i~-~~~~~~~L~~~l~~-~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 32 AIPALIELLKDEDPMVRRAAARALGRIG-DPEAIPALIKLLQD-DDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCH-HHHTHHHHHHHHTC--SSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHcC-CCcHHHHHHHHhhc
Confidence 4444444447789999999999999986 68899999999986 45666888887765
No 103
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=72.22 E-value=2.4e+02 Score=34.51 Aligned_cols=132 Identities=17% Similarity=0.110 Sum_probs=82.6
Q ss_pred chhhHHHHHHHHhhcccCccc-cccHHHHHhhcc---CCCChHHHHHH----HHHHHHhchHH-----------------
Q 003289 468 RPAEAALFCIRAISTYVSVVE-AEVMPQVMALLP---KLPQQPQLLQT----VCLTIGAYSKW----------------- 522 (833)
Q Consensus 468 ~~~Eaal~~l~~i~e~~~~~~-~~~l~~l~~~l~---~l~~~~~v~~t----~~~~ig~y~~~----------------- 522 (833)
.-++||+|...+++..-.+.+ ++++.++...+. -+....-+|++ ..+.+||.+.+
T Consensus 443 ~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~ 522 (1133)
T KOG1943|consen 443 HVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTN 522 (1133)
T ss_pred chHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhh
Confidence 347999999999998876542 445555655432 12212222322 22456664433
Q ss_pred -----------HhhCCCChhhHHHHHHHHH-hccCC-CHHHHHHHHHHHHHHHHHhhhhhh-cCHHHHHHHHHHHhcCcC
Q 003289 523 -----------FDAASSDPSILASVLSILT-SGMST-SEDTAAAAALAFRHICDDCRKKLC-GYLDGLYNVYRTAVNGEG 588 (833)
Q Consensus 523 -----------l~~~p~~~~~l~~~l~~l~-~~l~~-~~~v~~~A~~al~~l~~~~~~~l~-~~l~~ll~~l~~~l~~~~ 588 (833)
++..|+ |...+++=++ .-+.| ..+++..|++++.++...-.+.+. -++++++.... .
T Consensus 523 rsNcy~~l~~~ia~~~~---y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~l---s--- 593 (1133)
T KOG1943|consen 523 RSNCYLDLCVSIAEFSG---YREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTL---S--- 593 (1133)
T ss_pred hhhHHHHHhHHHHhhhh---HHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhc---C---
Confidence 223333 6666665443 32443 224999999999999988888877 56777776532 1
Q ss_pred CCCCCHhhHHHHHHHHHHHHhcC
Q 003289 589 SLKVSAEDSLHLVEALSMVITEL 611 (833)
Q Consensus 589 ~~~l~~~~~~~l~eai~~vi~~~ 611 (833)
-+.+.|...+-+.|.|+.+.
T Consensus 594 ---~~~~~r~g~~la~~ev~~~~ 613 (1133)
T KOG1943|consen 594 ---KDASMRHGVFLAAGEVIGAL 613 (1133)
T ss_pred ---CChHHhhhhHHHHHHHHHHh
Confidence 34667888888999888774
No 104
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=70.00 E-value=94 Score=29.87 Aligned_cols=106 Identities=16% Similarity=0.211 Sum_probs=64.5
Q ss_pred cCCCH-HHHHHHHHHHHHHHHHhhhhhh-------------cCHHH----HHHH---HHHHhcCcCCCCCCHhhHHHHHH
Q 003289 544 MSTSE-DTAAAAALAFRHICDDCRKKLC-------------GYLDG----LYNV---YRTAVNGEGSLKVSAEDSLHLVE 602 (833)
Q Consensus 544 l~~~~-~v~~~A~~al~~l~~~~~~~l~-------------~~l~~----ll~~---l~~~l~~~~~~~l~~~~~~~l~e 602 (833)
+.||. ++|..|+.++..+-+.++..|. |+... +++. +...++.+ -.......+++
T Consensus 49 l~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E----~~~~~l~q~lK 124 (182)
T PF13251_consen 49 LKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAE----KSPPVLTQLLK 124 (182)
T ss_pred HcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc----cccHHHHHHHH
Confidence 34553 5999999999988876654332 22222 2222 22223322 23456789999
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhc
Q 003289 603 ALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRY 663 (833)
Q Consensus 603 ai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 663 (833)
+++.++++.|.++... .++.+++..+...+...+. ..+ ...+.+++.+++.
T Consensus 125 ~la~Lv~~tPY~rL~~---~ll~~~v~~v~~~l~~~d~-----~v~--v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 125 CLAVLVQATPYHRLPP---GLLTEVVTQVRPLLRHRDP-----NVR--VAALSCLGALLSV 175 (182)
T ss_pred HHHHHHccCChhhcCH---hHHHHHHHHHHHHHhcCCC-----cHH--HHHHHHHHHHHcC
Confidence 9999999999988763 5566666666666665321 122 3356677776654
No 105
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=69.75 E-value=92 Score=38.37 Aligned_cols=152 Identities=16% Similarity=0.188 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCcH-HHHHHHHhhchhhc
Q 003289 78 EAVRGLQDSLNTLLKKFHKG-PPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFV-PGFLELLTVLPEEV 155 (833)
Q Consensus 78 ~~~~~lr~~Ll~~l~~~~~~-~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~~~~~~-~~~L~iL~~l~Ee~ 155 (833)
.+.+.|...+=++...+..+ ++.||+-|...|+.+...++.+.=.|. +++.++..++.-.-.. -.+++-+..++-=+
T Consensus 570 ~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~-iLshLiTfLNDkDw~LR~aFfdsI~gvsi~V 648 (1431)
T KOG1240|consen 570 TELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDV-ILSHLITFLNDKDWRLRGAFFDSIVGVSIFV 648 (1431)
T ss_pred hHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccc-hHHHHHHHhcCccHHHHHHHHhhccceEEEE
Confidence 34556666655555554434 458999999998888776654333332 5666666665321111 11222222111111
Q ss_pred ccccccCChhHHHHHHHHHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHHHhhccCCCCccccccchhHHHHHhccCCc
Q 003289 156 FNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN--ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE 233 (833)
Q Consensus 156 ~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~--~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~~~~L~~~ 233 (833)
+. +.-.+.++.++.+.++++ .+...+|.|+..-++.+. +..- .-.++++.+.-.|-.|
T Consensus 649 G~-----------------rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l-l~K~--~v~~i~~~v~PlL~hP 708 (1431)
T KOG1240|consen 649 GW-----------------RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL-LRKP--AVKDILQDVLPLLCHP 708 (1431)
T ss_pred ee-----------------eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc-cchH--HHHHHHHhhhhheeCc
Confidence 10 012356788999998875 478899999999999762 2221 2245667777777777
Q ss_pred c--hHHHHHHHHHHHHhhh
Q 003289 234 I--LSEASVNVISELIHYS 250 (833)
Q Consensus 234 ~--~~~~a~~~l~~ii~~~ 250 (833)
. .+-+++..+.++.+.-
T Consensus 709 N~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 709 NLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred hHHHHHHHHHHHHHHHhhh
Confidence 5 4788888888888654
No 106
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.63 E-value=2.4e+02 Score=33.37 Aligned_cols=154 Identities=11% Similarity=0.041 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHH-HhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcC--ChHHHHHHHHHhhh
Q 003289 549 DTAAAAALAFRHICD-DCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL--PQVDAKKALEMLCL 625 (833)
Q Consensus 549 ~v~~~A~~al~~l~~-~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~--~~~~~~~~l~~l~~ 625 (833)
..+++.+.-+..-+. .|+.++.| .+...+.++++..+ +--.+.....++..++.-. ..+...++++.+..
T Consensus 502 iiRRRVa~ilg~Wvsvq~~~e~k~---l~Y~a~lnLL~d~~----D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~ 574 (978)
T KOG1993|consen 502 IIRRRVAWILGQWVSVQQKLELKP---LLYCAFLNLLQDQN----DLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFV 574 (978)
T ss_pred HHHHHHHHHHhhhhheechHhHHH---HHHHHHHHhcCccc----cceeehHHHHHHHHhhhhccCChhhhhhhHHHHHH
Confidence 466666666665543 23333322 23445555554321 1124555666666666542 22334455554444
Q ss_pred hhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH
Q 003289 626 PVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYA 705 (833)
Q Consensus 626 p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~~ 705 (833)
-+ .+++..... .......++.+|+++...+ +-+.++..++.+.+..+=+.....+-++-++...+++.
T Consensus 575 ~l----fkll~~~~e------~Dtk~~VL~~ls~lI~r~~--e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~l 642 (978)
T KOG1993|consen 575 LL----FKLLKAVEE------CDTKTSVLNLLSTLIERVS--EHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNL 642 (978)
T ss_pred HH----HHHHHHHhh------hhhHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHH
Confidence 44 444433221 1223446888888877664 22234445555555554444455666777888888888
Q ss_pred HHHhhhhhhhhHHHHH
Q 003289 706 VRTSKRFMGITIGAIL 721 (833)
Q Consensus 706 ~~~~~~~~~~~l~~l~ 721 (833)
+.++|....++-|-+.
T Consensus 643 V~alg~qS~~~~~fL~ 658 (978)
T KOG1993|consen 643 VNALGAQSFEFYPFLY 658 (978)
T ss_pred HHHhccCCccchHHHH
Confidence 8888765444333333
No 107
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=65.92 E-value=1.2e+02 Score=28.59 Aligned_cols=96 Identities=6% Similarity=-0.026 Sum_probs=60.3
Q ss_pred HHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHh-------hhhhhhhHHHHHHHHH
Q 003289 653 HIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTS-------KRFMGITIGAILEEIQ 725 (833)
Q Consensus 653 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~~-------~~~~~~~l~~l~~~l~ 725 (833)
.+..+..+++.++ ++.+..........+..+++. +....+.+.+|..+.+++... ++...|.+|.++..++
T Consensus 45 G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~-~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll 122 (165)
T PF08167_consen 45 GLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEK-PDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLL 122 (165)
T ss_pred HHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHH
Confidence 4555666555432 233333334444555555555 455678899999999877643 2345788888888777
Q ss_pred HHHhh-cCCccHhhhHHHHHHHhcCC
Q 003289 726 GLYQQ-HQQPCFLYLSSEVIKIFGSD 750 (833)
Q Consensus 726 ~~~~~-~~~~~~L~~~~~li~~fg~~ 750 (833)
...+. ......+..+..++..|..-
T Consensus 123 ~l~~~~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 123 QLLQDSSCPETALDALATLLPHHPTT 148 (165)
T ss_pred HHHhccccHHHHHHHHHHHHHHCCcc
Confidence 76653 23357788888888877664
No 108
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=64.33 E-value=2.3e+02 Score=31.28 Aligned_cols=163 Identities=9% Similarity=0.058 Sum_probs=88.3
Q ss_pred cCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhh
Q 003289 571 GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDL 650 (833)
Q Consensus 571 ~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~ 650 (833)
.|...|+..+.+++... -++..+...+..+.-+..+.|. ++.+...-.+.++++..... .+...+
T Consensus 325 q~f~~iL~~l~EvL~d~----~~~~~k~laLrvL~~ml~~Q~~--------~l~DstE~ai~K~Leaa~ds-~~~v~~-- 389 (516)
T KOG2956|consen 325 QHFAEILLLLLEVLSDS----EDEIIKKLALRVLREMLTNQPA--------RLFDSTEIAICKVLEAAKDS-QDEVMR-- 389 (516)
T ss_pred HHHHHHHHHHHHHHccc----hhhHHHHHHHHHHHHHHHhchH--------hhhchHHHHHHHHHHHHhCC-chhHHH--
Confidence 56677777777766531 2344566666666666555431 23333333344444444321 111121
Q ss_pred hHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHh
Q 003289 651 TVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSK-RFMGITIGAILEEIQGLYQ 729 (833)
Q Consensus 651 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~~~-~~~~~~l~~l~~~l~~~~~ 729 (833)
.+-+...+..... .| ...+..+.|++.. .|....-.+..++.+++..+. ....+++|.+.+.+++.|.
T Consensus 390 -~Aeed~~~~las~---~P-~~~I~~i~~~Ilt------~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~ 458 (516)
T KOG2956|consen 390 -VAEEDCLTTLASH---LP-LQCIVNISPLILT------ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYD 458 (516)
T ss_pred -HHHHHHHHHHHhh---Cc-hhHHHHHhhHHhc------CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhc
Confidence 1233222233322 12 2223344444432 444555555566677666543 4567888999999999998
Q ss_pred hcCC---ccHhhhHHHHHHHhcCCcchhHHHHHH
Q 003289 730 QHQQ---PCFLYLSSEVIKIFGSDPSCASYLHNL 760 (833)
Q Consensus 730 ~~~~---~~~L~~~~~li~~fg~~~~~~~~~~~~ 760 (833)
.... .+..+|+-.++...|.++ +.|.+.++
T Consensus 459 S~SS~VRKtaVfCLVamv~~vG~~~-mePhL~~L 491 (516)
T KOG2956|consen 459 STSSTVRKTAVFCLVAMVNRVGMEE-MEPHLEQL 491 (516)
T ss_pred CchHHhhhhHHHhHHHHHHHHhHHh-hhhHhhhc
Confidence 7554 478899999999999432 55555443
No 109
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.76 E-value=3.4e+02 Score=32.41 Aligned_cols=205 Identities=13% Similarity=0.146 Sum_probs=106.8
Q ss_pred CcchhhHHHHHHHHhhcccCccc-----cccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCC---hhhHHHHH
Q 003289 466 EWRPAEAALFCIRAISTYVSVVE-----AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSD---PSILASVL 537 (833)
Q Consensus 466 ~w~~~Eaal~~l~~i~e~~~~~~-----~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~---~~~l~~~l 537 (833)
+..-.--|+.|++-+.|.++... ...+|-+.+-|..+. ...|...++..+...+ ..||.. ..-+..++
T Consensus 225 n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~Ie-yiDvAEQ~LqALE~iS---R~H~~AiL~AG~l~a~L 300 (1051)
T KOG0168|consen 225 NFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIE-YIDVAEQSLQALEKIS---RRHPKAILQAGALSAVL 300 (1051)
T ss_pred cHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhh-hhHHHHHHHHHHHHHH---hhccHHHHhcccHHHHH
Confidence 34444567888888888887652 346777777665443 3344444444444333 234431 01234444
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHH
Q 003289 538 SILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK 617 (833)
Q Consensus 538 ~~l~~~l~~~~~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~ 617 (833)
.|+ ..+.. . +|+.|-..-.+.|+..++.=..++-.-+..+.++++..+ ....+.+.-+.++++..... -.
T Consensus 301 syl-DFFSi-~-aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D-----~k~ies~~ic~~ri~d~f~h--~~ 370 (1051)
T KOG0168|consen 301 SYL-DFFSI-H-AQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQD-----KKPIESVCICLTRIADGFQH--GP 370 (1051)
T ss_pred HHH-HHHHH-H-HHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhcc-----chhHHHHHHHHHHHHHhccc--Ch
Confidence 443 11111 1 555555555677777665444455555556666665432 22334555556666666432 23
Q ss_pred HHHHHhhhh-hHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHH-HHHHHHHHHHHHHhhc
Q 003289 618 KALEMLCLP-VVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADA-IQRLWPIFKAIFDIRA 689 (833)
Q Consensus 618 ~~l~~l~~p-~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~-~~~~~~~l~~il~~~~ 689 (833)
+.+++++++ ++.+.++++.-.....+ ..-++..+.+++...++. |-..... -..+-..+..++.-+.
T Consensus 371 ~kLdql~s~dLi~~~~qLlsvt~t~Ls---~~~~~~vIrmls~msS~~--pl~~~tl~k~~I~~~L~~il~g~s 439 (1051)
T KOG0168|consen 371 DKLDQLCSHDLITNIQQLLSVTPTILS---NGTYTGVIRMLSLMSSGS--PLLFRTLLKLDIADTLKRILQGYS 439 (1051)
T ss_pred HHHHHHhchhHHHHHHHHHhcCccccc---ccchhHHHHHHHHHccCC--hHHHHHHHHhhHHHHHHHHHhccC
Confidence 567788877 77777777765432211 122444566666654432 2112222 2355566666676553
No 110
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=61.73 E-value=2.7e+02 Score=31.18 Aligned_cols=123 Identities=16% Similarity=0.198 Sum_probs=66.8
Q ss_pred cccHHHHHhhcc----CCCC--hHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 003289 489 AEVMPQVMALLP----KLPQ--QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHIC 562 (833)
Q Consensus 489 ~~~l~~l~~~l~----~l~~--~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~ 562 (833)
+.++...++++. +-|+ +|.+.++++.-|....+-...=|- ....++.-+.+- +-.+++ .++|
T Consensus 149 ~S~iRaai~f~i~~GkkGpe~vpp~lvkvvl~~ia~vgeS~qyPPV---NWaalLsPLMRl-nfGeEv--------q~lC 216 (589)
T PF11229_consen 149 SSFIRAAIDFLIEAGKKGPESVPPSLVKVVLKPIATVGESYQYPPV---NWAALLSPLMRL-NFGEEV--------QQLC 216 (589)
T ss_pred hhHHHHHHHHHHHccccCCccCCHHHHHHHHHHhhhcCCCCCCCCc---cHHHHhhHHHhc-cccHHH--------HHHH
Confidence 345666666653 2243 577888888877655443343332 566666666542 222323 3333
Q ss_pred HHhhh-hh--hcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhh
Q 003289 563 DDCRK-KL--CGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLP 626 (833)
Q Consensus 563 ~~~~~-~l--~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p 626 (833)
-+..- .. ......++.... ..+-.+.++...+.++++++...+..+|+++++.+.+.++--
T Consensus 217 LeiAvtQaqSSqsAa~fLg~Wl---sPpli~sLs~~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq 280 (589)
T PF11229_consen 217 LEIAVTQAQSSQSAAMFLGSWL---SPPLIHSLSVNTKKYLFESLSLWMKHVSEDQIQAFVENLMVQ 280 (589)
T ss_pred HHHHHHhccccccHHHHHHhhc---CcchhhhhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 22110 01 122333333221 111012356678999999999999999998887666654433
No 111
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=61.64 E-value=3.8e+02 Score=32.92 Aligned_cols=236 Identities=13% Similarity=0.130 Sum_probs=114.2
Q ss_pred cHHHHHhhcc-CCCC-hHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHh
Q 003289 491 VMPQVMALLP-KLPQ-QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG---MSTSEDTAAAAALAFRHICDDC 565 (833)
Q Consensus 491 ~l~~l~~~l~-~l~~-~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~---l~~~~~v~~~A~~al~~l~~~~ 565 (833)
.+..++.++. .+.+ +..||.+++.-+|+...-+. + .+...++.-++.. ...+. .---|+.+|..++..
T Consensus 338 ivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~---~Lad~vi~svid~~~p~e~~~-aWHgacLaLAELA~r- 410 (1133)
T KOG1943|consen 338 IVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--P---ELADQVIGSVIDLFNPAEDDS-AWHGACLALAELALR- 410 (1133)
T ss_pred HHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--H---HHHHHHHHHHHHhcCcCCchh-HHHHHHHHHHHHHhc-
Confidence 3444555543 4543 67999999999999875444 2 2555555544442 23333 666888888888743
Q ss_pred hhhhhc-CHHHHHHHHHHHhcCcC---CCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCc
Q 003289 566 RKKLCG-YLDGLYNVYRTAVNGEG---SLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEI 641 (833)
Q Consensus 566 ~~~l~~-~l~~ll~~l~~~l~~~~---~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~ 641 (833)
.-+.| -++.++..+.+.+.-.. ....+...|......+-++..+..+..++++++++...++.. .+.+.
T Consensus 411 -GlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~--AlFDr---- 483 (1133)
T KOG1943|consen 411 -GLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIV--ALFDR---- 483 (1133)
T ss_pred -CCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHH--HhcCc----
Confidence 22333 23334444433332110 012234445544445555555555566667666666555321 11111
Q ss_pred ccccCchhh--hHHHHHHHHhhhccCCc-------------------------ccHHHHHHHHHHHHHHHHHh--hcCCh
Q 003289 642 LQKKHPRDL--TVHIDRFAYIFRYVNHP-------------------------EAVADAIQRLWPIFKAIFDI--RAWDM 692 (833)
Q Consensus 642 ~~~~~~~~~--~~~l~~l~~~~~~~~~~-------------------------~~~~~~~~~~~~~l~~il~~--~~~~~ 692 (833)
+ .+.|.. +...+.+|.. .+.| -+++.+-.-.-|++..++++ .-+|+
T Consensus 484 -e-vncRRAAsAAlqE~VGR~---~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~ 558 (1133)
T KOG1943|consen 484 -E-VNCRRAASAALQENVGRQ---GNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDV 558 (1133)
T ss_pred -h-hhHhHHHHHHHHHHhccC---CCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccH
Confidence 1 111111 0111222221 1111 11111112234566666654 45688
Q ss_pred HHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHhhcCCccHhhhHHHHHH
Q 003289 693 RTMESLCRACKYAVRTSKRFM-GITIGAILEEIQGLYQQHQQPCFLYLSSEVIK 745 (833)
Q Consensus 693 ~v~e~~~~~~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~~~L~~~~~li~ 745 (833)
.+.|..-.++++....-.+++ ...+|++++.....=-...+++++...+.+..
T Consensus 559 ~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~ 612 (1133)
T KOG1943|consen 559 KIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGA 612 (1133)
T ss_pred HHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHH
Confidence 999988888887433323344 35677766643322222344555555444433
No 112
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=60.99 E-value=1.4e+02 Score=31.73 Aligned_cols=137 Identities=14% Similarity=0.156 Sum_probs=86.5
Q ss_pred CCCcchhhHHHHHHHHhhcccCcccc----ccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCCh------hhH
Q 003289 464 HNEWRPAEAALFCIRAISTYVSVVEA----EVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDP------SIL 533 (833)
Q Consensus 464 ~~~w~~~Eaal~~l~~i~e~~~~~~~----~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~------~~l 533 (833)
+.+-+++|.|+.-+.-+.+.++...+ ..+..++..+.. .++-||..+.++||... .+||... ..+
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~--~~~~lR~~Aa~Vigt~~---qNNP~~Qe~v~E~~~L 168 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLEN--SDAELRELAARVIGTAV---QNNPKSQEQVIELGAL 168 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcC--CcHHHHHHHHHHHHHHH---hcCHHHHHHHHHcccH
Confidence 56789999999999999999886532 344455553332 26899999999999874 5666421 133
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhh-----cCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHH
Q 003289 534 ASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLC-----GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVI 608 (833)
Q Consensus 534 ~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~~~l~-----~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi 608 (833)
+.++..+. -+.+..++..|-+|+..+.+.-..-.. +-.. .+.++++.+ ..+..-+.+++.=++.++
T Consensus 169 ~~Ll~~ls--~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~----~L~~vl~~~---~~~~~lkrK~~~Ll~~Ll 239 (342)
T KOG2160|consen 169 SKLLKILS--SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQ----VLRDVLQSN---NTSVKLKRKALFLLSLLL 239 (342)
T ss_pred HHHHHHHc--cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHH----HHHHHHHcC---CcchHHHHHHHHHHHHHH
Confidence 34333332 233445889999999999876543222 2333 344444432 233456677777778777
Q ss_pred hcCChH
Q 003289 609 TELPQV 614 (833)
Q Consensus 609 ~~~~~~ 614 (833)
...+.+
T Consensus 240 ~~~~s~ 245 (342)
T KOG2160|consen 240 QEDKSD 245 (342)
T ss_pred Hhhhhh
Confidence 776544
No 113
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=59.67 E-value=13 Score=23.72 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=17.4
Q ss_pred CCCcchhhHHHHHHHHhhccc
Q 003289 464 HNEWRPAEAALFCIRAISTYV 484 (833)
Q Consensus 464 ~~~w~~~Eaal~~l~~i~e~~ 484 (833)
..+|+-++++.++++.+++.+
T Consensus 11 D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 11 DPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp -SSHHHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHHhhC
Confidence 578999999999999988753
No 114
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=55.88 E-value=1.1e+02 Score=34.33 Aligned_cols=87 Identities=8% Similarity=0.088 Sum_probs=57.2
Q ss_pred hhHHHHHHHHhhcccCcccc--ccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCC
Q 003289 470 AEAALFCIRAISTYVSVVEA--EVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS 547 (833)
Q Consensus 470 ~Eaal~~l~~i~e~~~~~~~--~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~ 547 (833)
-+-++..++-+|+..+.... .++..+.+.+. + .+..||.++...+++|+-- ..++- .-..+...+.+++++.
T Consensus 465 ~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~i-L-EN~ivRsaAv~aLskf~ln-~~d~~---~~~sv~~~lkRclnD~ 538 (898)
T COG5240 465 HQITVRILGILGREGPRAKTPGKYVRHIYNRLI-L-ENNIVRSAAVQALSKFALN-ISDVV---SPQSVENALKRCLNDQ 538 (898)
T ss_pred hHHHHHHHHHhcccCCCCCCcchHHHHHHHHHH-H-hhhHHHHHHHHHHHHhccC-ccccc---cHHHHHHHHHHHhhcc
Confidence 35567777777777664432 34455554322 1 2578999999999998632 22332 4455667777888876
Q ss_pred H-HHHHHHHHHHHHHH
Q 003289 548 E-DTAAAAALAFRHIC 562 (833)
Q Consensus 548 ~-~v~~~A~~al~~l~ 562 (833)
+ +|+.+|+.+++.+-
T Consensus 539 DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 539 DDEVRDRASFLLRNMR 554 (898)
T ss_pred cHHHHHHHHHHHHhhh
Confidence 4 59999999998764
No 115
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=55.38 E-value=1.8e+02 Score=30.30 Aligned_cols=54 Identities=4% Similarity=0.059 Sum_probs=36.8
Q ss_pred hHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhh----h--cCHHHHHHHHHHHhc
Q 003289 532 ILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKL----C--GYLDGLYNVYRTAVN 585 (833)
Q Consensus 532 ~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l----~--~~l~~ll~~l~~~l~ 585 (833)
+++-+++.++.-+++.. .++.+++..+..|.+.+.... . +..+.+.+.+.+.+.
T Consensus 116 ~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~ 176 (282)
T PF10521_consen 116 HWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLY 176 (282)
T ss_pred hhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhh
Confidence 55666666666667643 499999999999999886544 2 445555566666553
No 116
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=55.04 E-value=2.4e+02 Score=32.72 Aligned_cols=93 Identities=9% Similarity=0.193 Sum_probs=49.3
Q ss_pred hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhh----------cCHHHHHHHHHHH--hcCcCCCCC--CHhhH
Q 003289 532 ILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLC----------GYLDGLYNVYRTA--VNGEGSLKV--SAEDS 597 (833)
Q Consensus 532 ~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~~~l~----------~~l~~ll~~l~~~--l~~~~~~~l--~~~~~ 597 (833)
+..+.+..|+...+... +...|..-+..+|. |+..++ .-+.+++..+... ....+.-++ +.+--
T Consensus 285 ~Y~pL~~LLl~s~d~~p-~taS~v~ileEl~~-~kqdva~~LVrLfl~~~r~~pfl~~L~~~ei~rtqD~NTlFRgNSLa 362 (800)
T KOG2059|consen 285 YYKPLMDLLLESVDVQP-ITASAVAILEELCR-EKQDVARPLVRLFLHSDRIVPFLSALAVNEIKRTQDPNTIFRGNSLA 362 (800)
T ss_pred hhhhHHHHHHhcccccc-cchhHHHHHHHHhh-hhhhHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCCceeeeccchH
Confidence 56677777766655433 67777888888887 554332 2233344433322 111000011 12223
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHH
Q 003289 598 LHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQE 633 (833)
Q Consensus 598 ~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~ 633 (833)
.+.|+.+..+.. ..|+...+.|+++++-+
T Consensus 363 sK~mde~mkl~G-------m~YLh~tLkPvi~kI~e 391 (800)
T KOG2059|consen 363 SKMMDEFMKLAG-------MHYLHVTLKPVIDKIFE 391 (800)
T ss_pred HHHHHHHHHHhc-------hHHHHHHhHHHHHHHHh
Confidence 344444443333 37899999999877644
No 117
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=54.88 E-value=1.4e+02 Score=27.37 Aligned_cols=75 Identities=12% Similarity=0.200 Sum_probs=47.8
Q ss_pred HHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCH--HHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhc
Q 003289 534 ASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYL--DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (833)
Q Consensus 534 ~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l--~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (833)
..++..+..-+.+++ .++.+|-..+..+++.|+..+...+ ..+++.+..++..+ .....+.++.+-+..-...
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~----~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR----VHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc----CCHHHHHHHHHHHHHHHHH
Confidence 344555555454432 3999999999999999998766433 34677777766542 4455666666666555544
Q ss_pred CC
Q 003289 611 LP 612 (833)
Q Consensus 611 ~~ 612 (833)
.+
T Consensus 112 f~ 113 (144)
T cd03568 112 FK 113 (144)
T ss_pred hC
Confidence 44
No 118
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.78 E-value=2.1e+02 Score=30.39 Aligned_cols=181 Identities=23% Similarity=0.240 Sum_probs=90.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhc---------ChhHHHHHHHHhccCCC------------------------
Q 003289 6 TVKEALNALYHHPDDAVRMQADRWLQDFQH---------TIDAWQVADNLLHDATS------------------------ 52 (833)
Q Consensus 6 ~v~~al~~ly~~~d~~~r~~A~~~L~~~q~---------s~~aw~~~~~LL~~~~~------------------------ 52 (833)
++..++-.||..+++..+-||.-.|..+.. ..++.....+||+++..
T Consensus 251 ~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~ 330 (550)
T KOG4224|consen 251 KLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIA 330 (550)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccccee
Confidence 477788889988888888888777765443 23344455666665321
Q ss_pred ----------------chHHHHHHHHHHHHHhhcCCCCCChhhHHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003289 53 ----------------NLETLIFCSQTLRSKVQRDVEELPSEAVRGLQD-----SLNTLLKKFHKGPPKVRTQISIAVAA 111 (833)
Q Consensus 53 ----------------~~~vrffaa~~L~~ki~~~w~~l~~~~~~~lr~-----~Ll~~l~~~~~~~~~v~~kL~~~la~ 111 (833)
+.+++-.|..||++.-... +..+..+++ .+..++.. +|-.++..+..++|.
T Consensus 331 dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass-----e~n~~~i~esgAi~kl~eL~lD---~pvsvqseisac~a~ 402 (550)
T KOG4224|consen 331 DAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS-----EHNVSVIRESGAIPKLIELLLD---GPVSVQSEISACIAQ 402 (550)
T ss_pred cccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh-----hhhhHHHhhcCchHHHHHHHhc---CChhHHHHHHHHHHH
Confidence 2234444444554432210 111222222 23333333 788899999999999
Q ss_pred HHhhccc-cccCCccchHHHHHhcCC-CCCcHHHHHHHHhhchhhcccccccCChhHHHHHHHHHHHHHHHHHHHHHhhh
Q 003289 112 LAVHISA-EDWGGGGIVNWLRDEMNS-HPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACL 189 (833)
Q Consensus 112 l~~~~~~-~~Wp~~~~~~~l~~~~~~-~~~~~~~~L~iL~~l~Ee~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l 189 (833)
++..... ...-+.++++-++....+ +.+.....-.-|..+.+++.+ ..++++....-.+.+-..|...+
T Consensus 403 Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~---------YarviEawd~P~~gi~g~L~Rfl 473 (550)
T KOG4224|consen 403 LALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH---------YARVIEAWDHPVQGIQGRLARFL 473 (550)
T ss_pred HHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHH---------HHHHHHHhcCcchhHHHHHHHHH
Confidence 8875432 112222244444544433 222233444455555554432 22333333222234445555555
Q ss_pred hhhHHHHHHHHHHHHHh
Q 003289 190 HINELKEQVLEAFASWL 206 (833)
Q Consensus 190 ~~~~~~~~~l~~~~~Wi 206 (833)
.+++ .++.-+..|.
T Consensus 474 ~S~~---~tf~hia~wT 487 (550)
T KOG4224|consen 474 ASHE---LTFRHIARWT 487 (550)
T ss_pred hhhH---HHHHHHHHHH
Confidence 4432 3344444553
No 119
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=53.55 E-value=2.1e+02 Score=32.86 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=8.7
Q ss_pred cCCchHHHHHHHHHHHH
Q 003289 780 SRPDVADDCFLLASRCI 796 (833)
Q Consensus 780 ~~pd~~~~~f~l~~~~~ 796 (833)
.++|.++-+..++.+-+
T Consensus 237 sD~e~Idrli~C~~~Al 253 (556)
T PF05918_consen 237 SDPESIDRLISCLRQAL 253 (556)
T ss_dssp SSHHHHHHHHHHHHHHG
T ss_pred cCHHHHHHHHHHHHHhh
Confidence 45555555555554443
No 120
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=52.41 E-value=1.9e+02 Score=31.04 Aligned_cols=127 Identities=13% Similarity=0.155 Sum_probs=67.0
Q ss_pred HHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhccC-CCC----hHHHHHHHHHHHHhchH
Q 003289 447 KILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-LPQ----QPQLLQTVCLTIGAYSK 521 (833)
Q Consensus 447 ~~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~~-l~~----~~~v~~t~~~~ig~y~~ 521 (833)
+.++..+.+.+. +.+-..++++|..+. .. ..-.+.+|-++.++.. ... +-.+....+.++.
T Consensus 177 q~yf~~It~a~~-----~~~~~~r~~aL~sL~---tD--~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~---- 242 (343)
T cd08050 177 QLYFEEITEALV-----GSNEEKRREALQSLR---TD--PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVR---- 242 (343)
T ss_pred HHHHHHHHHHHh-----CCCHHHHHHHHHHhc---cC--CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHH----
Confidence 334556665543 123344555555532 21 1123567777776542 111 1233333333333
Q ss_pred HHhhCCCC------hhhHHHHHHHHHhc-cC-CC---H--HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCc
Q 003289 522 WFDAASSD------PSILASVLSILTSG-MS-TS---E--DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGE 587 (833)
Q Consensus 522 ~l~~~p~~------~~~l~~~l~~l~~~-l~-~~---~--~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~ 587 (833)
=+-.||.. ++++|.++.+++.. +. .+ + .+|..||..+..+|+.+...-....+-++..+.+.+..+
T Consensus 243 ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~ 321 (343)
T cd08050 243 ALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDP 321 (343)
T ss_pred HHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCC
Confidence 34445542 24556666555422 11 12 1 499999999999999988765455555676776666543
No 121
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.29 E-value=5.1e+02 Score=31.14 Aligned_cols=124 Identities=10% Similarity=0.149 Sum_probs=71.6
Q ss_pred HHHHhhcccCccccccHHHHHhhcc---CCC--C-hHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCH-
Q 003289 476 CIRAISTYVSVVEAEVMPQVMALLP---KLP--Q-QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE- 548 (833)
Q Consensus 476 ~l~~i~e~~~~~~~~~l~~l~~~l~---~l~--~-~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~- 548 (833)
++.++.+. ..+..++.+.+.-. +.+ . --+|-.+.+.++-+..+.+. .+...+++.+++|+++|+
T Consensus 791 gv~~Lcev---y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~------~y~~~Li~tfl~gvrepd~ 861 (982)
T KOG4653|consen 791 GVVSLCEV---YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVF------KYKAVLINTFLSGVREPDH 861 (982)
T ss_pred HHHHHHHh---cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHH------HHHHHHHHHHHHhcCCchH
Confidence 33345554 33456777776432 122 1 12455444455444444444 367788899999999886
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCC
Q 003289 549 DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 612 (833)
Q Consensus 549 ~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~ 612 (833)
..+..++..+..+|+..+-.+..++-.....+..+....+ +.-.|...+.-+......++
T Consensus 862 ~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~----s~~vRRaAv~li~~lL~~tg 921 (982)
T KOG4653|consen 862 EFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDG----SVLVRRAAVHLLAELLNGTG 921 (982)
T ss_pred HHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCC----chhhHHHHHHHHHHHHhccc
Confidence 3677888889999988775555555555555555444311 23345555555555555544
No 122
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.77 E-value=5.2e+02 Score=31.13 Aligned_cols=148 Identities=9% Similarity=0.110 Sum_probs=82.7
Q ss_pred hccCCCH--HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHH
Q 003289 542 SGMSTSE--DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKA 619 (833)
Q Consensus 542 ~~l~~~~--~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~ 619 (833)
.+=++|. ....+..+.|..+.+.......++++.+++.+...--. ..+.+--....+.||....-+.++-
T Consensus 473 a~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S----~~n~ql~~Tss~~igs~s~~l~e~P---- 544 (982)
T KOG2022|consen 473 AGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLS----APNPQLLSTSSDLIGSLSNWLGEHP---- 544 (982)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccc----cCChhHHHHHHHHHHHHHHHHhcCC----
Confidence 3333554 25567778888888887777777777777666443111 1223333334444444444332111
Q ss_pred HHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHhhcCChHHHHHHH
Q 003289 620 LEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLC 699 (833)
Q Consensus 620 l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~ 699 (833)
..+.|.+.-+-+-+.+. +.....+..+.++.+.++ ....++..+++.++..++.+.........++.
T Consensus 545 --~~ln~sl~~L~~~Lh~s---------k~s~q~i~tl~tlC~~C~--~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm 611 (982)
T KOG2022|consen 545 --MYLNPSLPLLFQGLHNS---------KESEQAISTLKTLCETCP--ESLDPYADQFSAVCYEVLNKSNAKDSDRLKLM 611 (982)
T ss_pred --cccCchHHHHHHHhcCc---------hHHHHHHHHHHHHHHhhh--hhCchHHHHHHHHHHHHhcccccCchHHHHHH
Confidence 23444443333333221 122345666777777654 44556667788888777766444456677888
Q ss_pred HHHHHHHHHhh
Q 003289 700 RACKYAVRTSK 710 (833)
Q Consensus 700 ~~~~~~~~~~~ 710 (833)
+.+++.+....
T Consensus 612 ~sIGyvls~~~ 622 (982)
T KOG2022|consen 612 KSIGYVLSRLK 622 (982)
T ss_pred HHHHHHHHhcc
Confidence 88888776654
No 123
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=50.07 E-value=7.8e+02 Score=32.97 Aligned_cols=58 Identities=12% Similarity=0.198 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHh--hhhhhc--CHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhc
Q 003289 549 DTAAAAALAFRHICDDC--RKKLCG--YLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (833)
Q Consensus 549 ~v~~~A~~al~~l~~~~--~~~l~~--~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (833)
.++..|..++++++... ++++.. +-..++.-+..++... ...+.++.+++++..++.+
T Consensus 1152 ~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s----~~~eVrE~ILeCv~qmI~s 1213 (1780)
T PLN03076 1152 SIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKS----NAVEIRELIIRCVSQMVLS 1213 (1780)
T ss_pred hHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhc----CchHHHHHHHHHHHHHHHH
Confidence 37777777777777654 234432 2345666666666532 3457888999999877655
No 124
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=49.83 E-value=4.9e+02 Score=30.54 Aligned_cols=117 Identities=21% Similarity=0.250 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhcChhHHHHH----HHHhcc-CCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCC
Q 003289 24 MQADRWLQDFQHTIDAWQVA----DNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGP 98 (833)
Q Consensus 24 ~~A~~~L~~~q~s~~aw~~~----~~LL~~-~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~~~~~~~ 98 (833)
+=+-.|...+++.+-.-.+. ..+|.. .+++-.|||=.+++|...+. .-.+.+++-...+...++.-+.. .-
T Consensus 64 ~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~D---re 139 (892)
T KOG2025|consen 64 SFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKD---RE 139 (892)
T ss_pred HHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhc---cC
Confidence 33555666666554333333 344442 24566799999999986654 44577777777777777666654 45
Q ss_pred HHHHHHHHHHHHHHHhhcc-ccccCCccchHHHHHhcCCCC--CcHHHHHHHH
Q 003289 99 PKVRTQISIAVAALAVHIS-AEDWGGGGIVNWLRDEMNSHP--EFVPGFLELL 148 (833)
Q Consensus 99 ~~v~~kL~~~la~l~~~~~-~~~Wp~~~~~~~l~~~~~~~~--~~~~~~L~iL 148 (833)
+.||.+-..+|+.+-- ++ .++.| .+..+...++.+| ++...+|..+
T Consensus 140 p~VRiqAv~aLsrlQ~-d~~dee~~---v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 140 PNVRIQAVLALSRLQG-DPKDEECP---VVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred chHHHHHHHHHHHHhc-CCCCCccc---HHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 6888886666655421 22 12233 3444555555544 3344444333
No 125
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=47.86 E-value=2.6e+02 Score=26.84 Aligned_cols=69 Identities=10% Similarity=0.055 Sum_probs=47.4
Q ss_pred HHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH---hhhhhhhhHHHHHHHHH
Q 003289 654 IDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRT---SKRFMGITIGAILEEIQ 725 (833)
Q Consensus 654 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~---~~~~~~~~l~~l~~~l~ 725 (833)
...+..++.. .+++-+.+++.++.+.+...+.. .|++|..++..++.+.+++ .|+.+.|+..+++..+.
T Consensus 59 ~~g~~dll~~-~~~~kilPvlPqLI~plk~AL~t--r~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 59 RQGIKDLLER-GGGEKILPVLPQLIIPLKRALNT--RDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLN 130 (183)
T ss_pred HHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 3334444433 23345677777777777776653 5789999999999998553 68888888888877654
No 126
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.17 E-value=6.7e+02 Score=31.34 Aligned_cols=130 Identities=9% Similarity=0.062 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcC------CccHhhhHH--HHHHHhcCCcchhHHHHHHHHH
Q 003289 692 MRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQ------QPCFLYLSS--EVIKIFGSDPSCASYLHNLIEA 763 (833)
Q Consensus 692 ~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~------~~~~L~~~~--~li~~fg~~~~~~~~~~~~~~~ 763 (833)
.......+.+++.++...+.+...+++.++.-++-..+... .-.+|..++ +....+|+++ ....+..++..
T Consensus 711 ~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~lnefl~~ 789 (1176)
T KOG1248|consen 711 SPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILNEFLSI 789 (1176)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHHHHHHH
Confidence 35556678999999998887777778877664443333211 124567777 5566677775 22334444433
Q ss_pred HHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCccCCcCCcHHHHHHHHHcccccCchhhhhhc
Q 003289 764 LFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHRRRILICK 832 (833)
Q Consensus 764 l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 832 (833)
+... +. .+.+-++.+-+--++.++.. ...++..+.++.+++.+...|+-..|+.+.+|.
T Consensus 790 Isag----l~-----gd~~~~~as~Ivai~~il~e-~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI 848 (1176)
T KOG1248|consen 790 ISAG----LV-----GDSTRVVASDIVAITHILQE-FKNILDDETLEKLISMVCLYLASNSREIAKAAI 848 (1176)
T ss_pred HHhh----hc-----ccHHHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3322 11 11121221112222233322 223345566777777777777777777766664
No 127
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.96 E-value=5.5e+02 Score=30.34 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=20.8
Q ss_pred HHHHHHhhhcCCCcchhhhhHHHHHHHHH
Q 003289 317 IVHALLEVASHPEYDIASMTFNFWHSLQV 345 (833)
Q Consensus 317 ~l~~ll~~~~~~~~~v~~~~l~fw~~l~~ 345 (833)
++--+|.+++.||.+++.-++.+-..+..
T Consensus 318 l~mDvLrvLss~dldvr~Ktldi~ldLvs 346 (948)
T KOG1058|consen 318 LIMDVLRVLSSPDLDVRSKTLDIALDLVS 346 (948)
T ss_pred HHHHHHHHcCcccccHHHHHHHHHHhhhh
Confidence 33345667788899999999988665543
No 128
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=45.27 E-value=3.9e+02 Score=28.15 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=22.6
Q ss_pred hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 003289 532 ILASVLSILTSGMSTSEDTAAAAALAFRHICDD 564 (833)
Q Consensus 532 ~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~ 564 (833)
|..+..+.++...+..+ +...+++.+..+|.+
T Consensus 2 ~Y~~l~~ll~~s~~~~p-~~~s~~~~l~e~~~~ 33 (313)
T cd05394 2 YYSSLRSLLLKSPDVQP-ISASAAYILGEVCRD 33 (313)
T ss_pred chHHHHHHHHhCcccCC-CcccHHHHHHHHHhh
Confidence 45667777777765444 667788888888865
No 129
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=45.16 E-value=7e+02 Score=30.99 Aligned_cols=200 Identities=19% Similarity=0.128 Sum_probs=100.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHH
Q 003289 9 EALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLN 88 (833)
Q Consensus 9 ~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~~lr~~Ll 88 (833)
..+..| ..+|+..|+.|=++|.++. .+++-.....+|.+ .+..||.-|+..|..... . ++.. ..|.
T Consensus 625 ~L~~~L-~D~d~~VR~~Av~~L~~~~-~~~~~~~L~~aL~D--~d~~VR~~Aa~aL~~l~~-~---~~~~------~~L~ 690 (897)
T PRK13800 625 ELAPYL-ADPDPGVRRTAVAVLTETT-PPGFGPALVAALGD--GAAAVRRAAAEGLRELVE-V---LPPA------PALR 690 (897)
T ss_pred HHHHHh-cCCCHHHHHHHHHHHhhhc-chhHHHHHHHHHcC--CCHHHHHHHHHHHHHHHh-c---cCch------HHHH
Confidence 334444 6789999999999999987 46666666677754 577899999999865422 1 1111 1233
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC-CCCcHHHHHHHHhhchh--hcccccccCChh
Q 003289 89 TLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS-HPEFVPGFLELLTVLPE--EVFNYKIAARPE 165 (833)
Q Consensus 89 ~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~-~~~~~~~~L~iL~~l~E--e~~~~~~~~~~~ 165 (833)
..+.. .++.||...+.+|..+.. . -...++..+.. ++.........|..+.. .+...-..-...
T Consensus 691 ~~L~~---~d~~VR~~A~~aL~~~~~--------~--~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~ 757 (897)
T PRK13800 691 DHLGS---PDPVVRAAALDVLRALRA--------G--DAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENRE 757 (897)
T ss_pred HHhcC---CCHHHHHHHHHHHHhhcc--------C--CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHH
Confidence 34332 455677766666554321 1 11223333332 12122223333332210 000000000122
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHhhhhh--hHHHHHHHHHHHHHhhccCCCCccccccchhHHHHHhccCCc--chHHH
Q 003289 166 RRRQFEKELTSQM---EVALSTLTACLHI--NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE--ILSEA 238 (833)
Q Consensus 166 ~r~~l~~~l~~~~---~~vl~~l~~~l~~--~~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~~~~L~~~--~~~~~ 238 (833)
-|...-..|.... +...+.+...+.+ +.++..++.++...-. + ......+...|.++ .++..
T Consensus 758 VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~-----~------~~~~~~l~~aL~d~d~~VR~~ 826 (897)
T PRK13800 758 VRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGC-----P------PDDVAAATAALRASAWQVRQG 826 (897)
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCC-----c------chhHHHHHHHhcCCChHHHHH
Confidence 3333333332221 2234555566554 3678888887764321 0 12334455566554 57888
Q ss_pred HHHHHHHH
Q 003289 239 SVNVISEL 246 (833)
Q Consensus 239 a~~~l~~i 246 (833)
|++.|..+
T Consensus 827 Aa~aL~~l 834 (897)
T PRK13800 827 AARALAGA 834 (897)
T ss_pred HHHHHHhc
Confidence 88887643
No 130
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=45.03 E-value=3.1e+02 Score=26.82 Aligned_cols=58 Identities=9% Similarity=0.052 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHH
Q 003289 555 ALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK 617 (833)
Q Consensus 555 ~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~ 617 (833)
-..+..+.+.++..-.|++..++..+-++-... +.+-+..+=+++|+.+.+++++...
T Consensus 21 l~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~-----~f~~~~~~e~~lgaAi~amGpe~vL 78 (198)
T PF08161_consen 21 LNVLSALFEKLGERSSPLLKPILKTLGDLRESE-----DFSFRKELEQVLGAAIRAMGPEQVL 78 (198)
T ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCC-----CcchHHHHHHHHHHHHHHCCHHHHH
Confidence 333444445555555577777888777776542 2456788888999999998877654
No 131
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=43.73 E-value=30 Score=27.55 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHhhcccCcc----ccccHHHHHhhccCCCChHHHHHHHHHHHHhchH
Q 003289 469 PAEAALFCIRAISTYVSVV----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSK 521 (833)
Q Consensus 469 ~~Eaal~~l~~i~e~~~~~----~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~ 521 (833)
++-++||+++.++..-..- +.+.++.+++...+-| ...+|.|++.++|-.++
T Consensus 3 ~lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~-v~siRGT~fy~Lglis~ 58 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSP-VLSIRGTCFYVLGLISS 58 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCC-ccchHHHHHHHHHHHhC
Confidence 4678999999998753321 2345555555443322 57899999999997653
No 132
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=43.65 E-value=5.1e+02 Score=30.95 Aligned_cols=126 Identities=20% Similarity=0.215 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHHHHhcC-hh-HHHHHHHHhcc-CCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHH
Q 003289 17 HPDDAVRMQADRWLQDFQHT-ID-AWQVADNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKK 93 (833)
Q Consensus 17 ~~d~~~r~~A~~~L~~~q~s-~~-aw~~~~~LL~~-~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~~ 93 (833)
..|.+.++--.-||..+-+. |+ +-..+..+..+ .+.++.+|-+|.+++-.. .. .++-..++..+.+
T Consensus 66 trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l--------~~---~el~~~~~~~ik~ 134 (757)
T COG5096 66 TRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLL--------RV---KELLGNIIDPIKK 134 (757)
T ss_pred hcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc--------Ch---HHHHHHHHHHHHH
Confidence 45889999999999887664 32 23334555543 246788999999988632 11 2244445555555
Q ss_pred hcC-CCHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcC-CCCCcHHHHHHHHhhchhh
Q 003289 94 FHK-GPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMN-SHPEFVPGFLELLTVLPEE 154 (833)
Q Consensus 94 ~~~-~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~-~~~~~~~~~L~iL~~l~Ee 154 (833)
..+ +.++||+..+.+++.++.... +..++.++...+...+. ++|..+...+..|..+.+|
T Consensus 135 ~l~d~~ayVRk~Aalav~kly~ld~-~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 135 LLTDPHAYVRKTAALAVAKLYRLDK-DLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HccCCcHHHHHHHHHHHHHHHhcCH-hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 332 567999999999999885332 23444223333444443 4677778888888888887
No 133
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=43.23 E-value=2.6e+02 Score=25.56 Aligned_cols=73 Identities=8% Similarity=0.150 Sum_probs=44.6
Q ss_pred HHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHhhhhhhcCH--HHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHh
Q 003289 534 ASVLSILTSGMST--SEDTAAAAALAFRHICDDCRKKLCGYL--DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVIT 609 (833)
Q Consensus 534 ~~~l~~l~~~l~~--~~~v~~~A~~al~~l~~~~~~~l~~~l--~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~ 609 (833)
..++..+-.-+.+ |. ++.+|...+..+++.|+..+...+ ..+++.+..++.. ..+...+.++.+-+-.-..
T Consensus 40 k~a~ral~krl~~~n~~-vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~----~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 40 KYAMRALKKRLLSKNPN-VQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT----TKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHcCCChH-HHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc----cCCHHHHHHHHHHHHHHHH
Confidence 3445555444443 45 999999999999999988665332 3366666666543 2345556666655554444
Q ss_pred cC
Q 003289 610 EL 611 (833)
Q Consensus 610 ~~ 611 (833)
..
T Consensus 115 ~f 116 (142)
T cd03569 115 AF 116 (142)
T ss_pred Hh
Confidence 43
No 134
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=43.17 E-value=4.2e+02 Score=27.91 Aligned_cols=65 Identities=15% Similarity=0.388 Sum_probs=43.2
Q ss_pred CCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccH
Q 003289 592 VSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAV 670 (833)
Q Consensus 592 l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 670 (833)
.+..+-+-++..|++++...|+|+..+.+.+++. ++.+++.. ..+ .+ .+..++.+|.+...|+|+
T Consensus 58 ~~ekdle~vlnsi~sLi~~~~~e~~e~~v~a~~e-------kva~q~n~----~~~-~l--~L~vLsnLfn~~d~~~~a 122 (378)
T KOG2753|consen 58 IPEKDLECVLNSIVSLIKNAPPEKVEEMVKAICE-------KVAKQPND----KTA-SL--RLQVLSNLFNGVDKPTPA 122 (378)
T ss_pred CCcchHHHHHHHHHHHHHhCCHHHhHHHHHHHHH-------HHhcCccC----CCc-cc--HHHHHHHHHhccCCCchH
Confidence 4455678889999999999887776666555543 33444332 111 12 578899999988777764
No 135
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.03 E-value=2.2e+02 Score=33.60 Aligned_cols=134 Identities=10% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHhHhhhhcccccCCccchhhhhhhchhHHHHHHHhhcCh--hHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHh
Q 003289 403 KEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGG--DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAI 480 (833)
Q Consensus 403 ~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~--~~~l~~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i 480 (833)
+.+-+|.++ +.|++.++..-... ...+.++.+.+.+ .+..+-+.+.+.-+
T Consensus 403 eGg~e~K~a-----------------ivd~Ii~iie~~pdsKe~~L~~LCefIED-----------ce~~~i~~rILhlL 454 (865)
T KOG1078|consen 403 EGGFEFKRA-----------------IVDAIIDIIEENPDSKERGLEHLCEFIED-----------CEFTQIAVRILHLL 454 (865)
T ss_pred ccCchHHHH-----------------HHHHHHHHHHhCcchhhHHHHHHHHHHHh-----------ccchHHHHHHHHHH
Q ss_pred hcccCcc--ccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHH
Q 003289 481 STYVSVV--EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALA 557 (833)
Q Consensus 481 ~e~~~~~--~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~a 557 (833)
+..++.. .+.++..+.+.+- +. +..+|..+..++.+|+ ..++. ..+++...+.+++.++. .|+.+|..+
T Consensus 455 G~EgP~a~~Pskyir~iyNRvi-LE-n~ivRaaAv~alaKfg---~~~~~---l~~sI~vllkRc~~D~DdevRdrAtf~ 526 (865)
T KOG1078|consen 455 GKEGPKAPNPSKYIRFIYNRVI-LE-NAIVRAAAVSALAKFG---AQDVV---LLPSILVLLKRCLNDSDDEVRDRATFY 526 (865)
T ss_pred hccCCCCCCcchhhHHHhhhhh-hh-hhhhHHHHHHHHHHHh---cCCCC---ccccHHHHHHHHhcCchHHHHHHHHHH
Q ss_pred HHHHHHHhhhhhhcC
Q 003289 558 FRHICDDCRKKLCGY 572 (833)
Q Consensus 558 l~~l~~~~~~~l~~~ 572 (833)
+..+-+.-.....++
T Consensus 527 l~~l~~~~~~l~~~~ 541 (865)
T KOG1078|consen 527 LKNLEEKDDVLNQNY 541 (865)
T ss_pred HHHhhhhhhhhcccc
No 136
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=41.85 E-value=1e+02 Score=28.96 Aligned_cols=72 Identities=13% Similarity=0.128 Sum_probs=50.9
Q ss_pred HHHHHHHHhccCCCH--HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhc
Q 003289 534 ASVLSILTSGMSTSE--DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (833)
Q Consensus 534 ~~~l~~l~~~l~~~~--~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (833)
.-+++.+.+-+.++. .....+..|+..+.+..+..-.||++.++..+...+.+ .+..-++.++.-++.++.-
T Consensus 85 ~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~-----~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 85 TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRT-----CPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHh-----CCHHHHHHHHHHHHHHHHH
Confidence 334466666666664 24557788888888766555579999999888888764 3346788888888877654
No 137
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=41.04 E-value=2.7e+02 Score=25.09 Aligned_cols=75 Identities=9% Similarity=0.071 Sum_probs=45.2
Q ss_pred HHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCH--HHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHh
Q 003289 533 LASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYL--DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVIT 609 (833)
Q Consensus 533 l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l--~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~ 609 (833)
-..++..+..-+.+++ .++.+|...+..++..|+..+...+ ..+++.+..++.... .....+.++.+-+..-..
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~---~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKY---PLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCC---CcHHHHHHHHHHHHHHHH
Confidence 3455556655565443 3999999999999999988776433 336777777665421 111245555555544433
Q ss_pred c
Q 003289 610 E 610 (833)
Q Consensus 610 ~ 610 (833)
.
T Consensus 112 ~ 112 (133)
T smart00288 112 A 112 (133)
T ss_pred H
Confidence 3
No 138
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=40.41 E-value=2.4e+02 Score=29.40 Aligned_cols=104 Identities=13% Similarity=0.225 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh---hHHHHHHHHhccCCCchHHHHHH-HHHHHHHhhcCCCCCChhh
Q 003289 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTI---DAWQVADNLLHDATSNLETLIFC-SQTLRSKVQRDVEELPSEA 79 (833)
Q Consensus 4 ~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~---~aw~~~~~LL~~~~~~~~vrffa-a~~L~~ki~~~w~~l~~~~ 79 (833)
.+.|.+++..+-.-...+.....+.+|...-++. ..|.+...|+..--...--.||- +.. ..+. .........
T Consensus 2 ~~~~~~~l~~f~~~k~~~l~~~L~~il~~ia~tg~~~~~W~~lk~l~~~kl~~v~~e~~~~~p~--~~~~-~~~~~~~~~ 78 (288)
T PF09184_consen 2 IEELLDALENFMKIKSKELPPELEDILEHIAKTGETWYPWSLLKSLFRHKLEKVIDEFFESAPE--ESGP-QNPNVEPED 78 (288)
T ss_pred hHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHHHHhcCcc--ccCC-CCCCcchhh
Confidence 3567778888865555566778888888877763 34776666664310001112220 000 1111 123344456
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003289 80 VRGLQDSLNTLLKKFHKGPPKVRTQISIAVAA 111 (833)
Q Consensus 80 ~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~ 111 (833)
...++..+..++..|.. |+|...|||..|..
T Consensus 79 ~~~~~~~~~~~~~~f~~-~PfTiqRlcEl~~~ 109 (288)
T PF09184_consen 79 YEEMKERILELLDSFDE-PPFTIQRLCELLLD 109 (288)
T ss_pred HHHHHHHHHHHHHhcCC-CChhHHHHHHHHhC
Confidence 78899999999998866 88999999988754
No 139
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=39.29 E-value=1.7e+02 Score=26.62 Aligned_cols=77 Identities=9% Similarity=0.130 Sum_probs=48.2
Q ss_pred hHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCH--HHHHHHHHHHhcCcCCCCCCHh--hHHHHHHHHHH
Q 003289 532 ILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYL--DGLYNVYRTAVNGEGSLKVSAE--DSLHLVEALSM 606 (833)
Q Consensus 532 ~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l--~~ll~~l~~~l~~~~~~~l~~~--~~~~l~eai~~ 606 (833)
.-..++..+-.-+.+++ .++..|-..+..+++.|...+...+ ..+++.+..++..+ ..... .+.++++-+..
T Consensus 39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~---~~~~~~~Vk~k~l~ll~~ 115 (140)
T PF00790_consen 39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSK---KTDPETPVKEKILELLQE 115 (140)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHT---TTHHHSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccC---CCCchhHHHHHHHHHHHH
Confidence 44566666666665542 4999999999999999987775332 34666776666542 11122 56666666655
Q ss_pred HHhcC
Q 003289 607 VITEL 611 (833)
Q Consensus 607 vi~~~ 611 (833)
-....
T Consensus 116 W~~~f 120 (140)
T PF00790_consen 116 WAEAF 120 (140)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 54444
No 140
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=38.37 E-value=2e+02 Score=24.07 Aligned_cols=84 Identities=21% Similarity=0.110 Sum_probs=50.2
Q ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccc
Q 003289 39 AWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISA 118 (833)
Q Consensus 39 aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~ 118 (833)
...-+..-|++ ..+.+|-.|..+|++.|+++- .+..+...+-.-++..+.. ..++|-=.-...++.++-..+
T Consensus 4 ~~~~al~~L~d--p~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d---~DsyVYL~aI~~L~~La~~~p- 75 (92)
T PF10363_consen 4 TLQEALSDLND--PLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKD---EDSYVYLNAIKGLAALADRHP- 75 (92)
T ss_pred HHHHHHHHccC--CCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCC---CCchHHHHHHHHHHHHHHHCh-
Confidence 34455666665 346799999999999999764 3333444444444444433 456665555567777765433
Q ss_pred cccCCccchHHHHHhcC
Q 003289 119 EDWGGGGIVNWLRDEMN 135 (833)
Q Consensus 119 ~~Wp~~~~~~~l~~~~~ 135 (833)
+. .++.+++...
T Consensus 76 ----~~-vl~~L~~~y~ 87 (92)
T PF10363_consen 76 ----DE-VLPILLDEYA 87 (92)
T ss_pred ----HH-HHHHHHHHHh
Confidence 21 5666665543
No 141
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.41 E-value=3e+02 Score=31.13 Aligned_cols=143 Identities=13% Similarity=0.125 Sum_probs=76.1
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHH--HHHHhhhhhhhhHHHHHHHHHHHHhhcCCccHhhhHHHHHHHhcCCcchhH
Q 003289 678 WPIFKAIFDIRAWDMRTMESLCRACKY--AVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCAS 755 (833)
Q Consensus 678 ~~~l~~il~~~~~~~~v~e~~~~~~~~--~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~L~~~~~li~~fg~~~~~~~ 755 (833)
.|.+..+++..+.+..=++..+++-|+ ..+.++..+ +.++..+....++...++ =..+++++..||+...+..
T Consensus 114 ~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~----~~~L~~l~~lLe~~~l~~-~~~l~~Vl~~l~SWl~~~~ 188 (559)
T KOG2081|consen 114 VPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQV----SKVLVFLSDLLERSDLKS-SDDLEQVLRCLGSWLRLHV 188 (559)
T ss_pred HHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhH----HHHHHHHHHHHhhcCCCh-hhHHHHHHHHHhhhhhhcc
Confidence 345666677766544333443444443 223344444 444444445555555443 2456778888887654333
Q ss_pred HHHHHH---HHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHh------hCCCccCCcCCcHHHHHHHHHcccccCch
Q 003289 756 YLHNLI---EALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIR------YCPQLFIPSSVFPSLVDCSMIGITVQHRR 826 (833)
Q Consensus 756 ~~~~~~---~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~~~------~~p~~~~~~~~l~~~~~~~~~~l~~~~~~ 826 (833)
...+.+ .++++..|..++. ..-+-+.++....++..+.. .++..+.++..++..+.++..+-..++++
T Consensus 189 ~~~d~v~a~~pLi~l~F~sl~~---~~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~ 265 (559)
T KOG2081|consen 189 FPPDQVLASFPLITLAFRSLSD---DELHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNE 265 (559)
T ss_pred CCHHHHHhhhHHHHHHHHHccc---chhhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHH
Confidence 222222 2355666666652 11122233333333333332 34445667788999999999998888877
Q ss_pred hh
Q 003289 827 RI 828 (833)
Q Consensus 827 ~~ 828 (833)
++
T Consensus 266 a~ 267 (559)
T KOG2081|consen 266 AI 267 (559)
T ss_pred HH
Confidence 54
No 142
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=36.29 E-value=2.2e+02 Score=34.30 Aligned_cols=84 Identities=10% Similarity=0.073 Sum_probs=64.5
Q ss_pred hHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhc
Q 003289 532 ILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (833)
Q Consensus 532 ~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (833)
.++.+++.++++++-|+ .|+..+-..|.-+......-+..|+++++..+..+-...+ ......|+..+.+++.+...
T Consensus 906 ~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~--n~~~~VR~~ALqcL~aL~~~ 983 (1030)
T KOG1967|consen 906 QFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDND--NNMMVVREDALQCLNALTRR 983 (1030)
T ss_pred chhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCC--cchhHHHHHHHHHHHHHhcc
Confidence 57888889999988765 3888999999988888777777899999988877644321 22356899999999999888
Q ss_pred CChHHHH
Q 003289 611 LPQVDAK 617 (833)
Q Consensus 611 ~~~~~~~ 617 (833)
+|.....
T Consensus 984 ~P~~~l~ 990 (1030)
T KOG1967|consen 984 LPTKSLL 990 (1030)
T ss_pred CCCcccc
Confidence 8865443
No 143
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.60 E-value=4.9e+02 Score=27.72 Aligned_cols=108 Identities=18% Similarity=0.169 Sum_probs=69.0
Q ss_pred HHHHHHH--HHHHh-cCCCHHHHHHHHHHHHHHhc---------ChhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcC
Q 003289 4 QNTVKEA--LNALY-HHPDDAVRMQADRWLQDFQH---------TIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRD 71 (833)
Q Consensus 4 ~~~v~~a--l~~ly-~~~d~~~r~~A~~~L~~~q~---------s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~ 71 (833)
..++.+. ...+- ++.+.+.|..|-.-|+.+-. +-++|......+. +.+.++|-.||.++-..+.++
T Consensus 78 ~~~~~~~~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~--~~~~~lR~~Aa~Vigt~~qNN 155 (342)
T KOG2160|consen 78 ISDVMSMIPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLE--NSDAELRELAARVIGTAVQNN 155 (342)
T ss_pred HHHHHHhhhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhc--CCcHHHHHHHHHHHHHHHhcC
Confidence 3344444 33443 23678888888887776554 4566777777665 467889999999999999875
Q ss_pred CCCCChhhHHHHHHHHHHHHHH-h-cCCCHHHHHHHHHHHHHHHhhcc
Q 003289 72 VEELPSEAVRGLQDSLNTLLKK-F-HKGPPKVRTQISIAVAALAVHIS 117 (833)
Q Consensus 72 w~~l~~~~~~~lr~~Ll~~l~~-~-~~~~~~v~~kL~~~la~l~~~~~ 117 (833)
|..+-..+...-+..|.. + .++|.-+|+|.--+++.++....
T Consensus 156 ----P~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~ 199 (342)
T KOG2160|consen 156 ----PKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNK 199 (342)
T ss_pred ----HHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCc
Confidence 444433333332333222 2 24567788998888888877554
No 144
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=34.29 E-value=4.1e+02 Score=25.18 Aligned_cols=65 Identities=12% Similarity=0.202 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc---cccccCCccchHHHHHhcCCCCCcHHHHHHHHhhch
Q 003289 82 GLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHI---SAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLP 152 (833)
Q Consensus 82 ~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~---~~~~Wp~~~~~~~l~~~~~~~~~~~~~~L~iL~~l~ 152 (833)
+||.-|+..|..... +...-+.||.+++.++... ..+.|++ +-+.+.+..++.+ .-.+.++..||
T Consensus 3 eikplLIsCL~~q~~-k~s~~KiL~~iVs~Va~~v~~~~~~~W~e--L~d~Ils~~~~e~---~kA~~IF~~L~ 70 (174)
T PF04510_consen 3 EIKPLLISCLTMQET-KESDFKILRRIVSHVAYEVFDLQEGGWDE--LSDCILSLSENEP---VKAFHIFICLP 70 (174)
T ss_pred chHHHHHHHHHhhcc-cHhHHHHHHHHHHHHHHHHHhcCCCCchh--HHHHHHHhhccch---HHHHHHHHhCC
Confidence 578888999887421 2345566777766666433 4578998 6665655443333 34455666554
No 145
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=34.01 E-value=1.6e+03 Score=32.09 Aligned_cols=159 Identities=9% Similarity=0.078 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCccc-----cccHHHHHhhccCCCC---h---HHHHHHHH
Q 003289 445 TLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE-----AEVMPQVMALLPKLPQ---Q---PQLLQTVC 513 (833)
Q Consensus 445 ~l~~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~~-----~~~l~~l~~~l~~l~~---~---~~v~~t~~ 513 (833)
+.+++.+.+...+- +..|...-+++.++.++-+.++..- .+.+..++..+..++. . ...+....
T Consensus 1030 i~~~l~~k~~~lCy-----~~~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~ 1104 (3550)
T KOG0889|consen 1030 MFEYLLEKLCHLCY-----DSTWYAKDGGVNGIKCLIESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILM 1104 (3550)
T ss_pred hHHHHHHHHHHHhc-----cHhHHHHcCCCceeeeehhhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHH
Confidence 45555555544332 5789999999999999988887221 1233344444443331 1 12333333
Q ss_pred HHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCc----C
Q 003289 514 LTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGE----G 588 (833)
Q Consensus 514 ~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~----~ 588 (833)
.++..+........+.......++..+...+.+|+ .|+..+-.++..+.+.. .+.+..++..+.+++..+ .
T Consensus 1105 ~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s----~~~v~~L~~p~K~~ll~p~f~k~ 1180 (3550)
T KOG0889|consen 1105 DILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELS----GKSVVKLLEPFKDVLLSPIFKKP 1180 (3550)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHhccccccc
Confidence 44444433222111111366777777888887775 58888888888877765 344444555554444211 1
Q ss_pred CCCCCHhhHHHHHHHHHHHHhcCC
Q 003289 589 SLKVSAEDSLHLVEALSMVITELP 612 (833)
Q Consensus 589 ~~~l~~~~~~~l~eai~~vi~~~~ 612 (833)
-..++...+...+.|+..-+.--|
T Consensus 1181 lr~~p~~~qig~vd~~~fC~~l~p 1204 (3550)
T KOG0889|consen 1181 LRALPFTIQIGHLDAITFCLSLGP 1204 (3550)
T ss_pred cccCCHHHHhhhHHHHHHHHHcCC
Confidence 123567788888888887776644
No 146
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=33.00 E-value=68 Score=21.81 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=17.2
Q ss_pred HHHhccCCC-HHHHHHHHHHHHHHHH
Q 003289 539 ILTSGMSTS-EDTAAAAALAFRHICD 563 (833)
Q Consensus 539 ~l~~~l~~~-~~v~~~A~~al~~l~~ 563 (833)
.|...+.++ ..++..|+.|+.++|.
T Consensus 16 ~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 16 PLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 333334443 3599999999999873
No 147
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=32.66 E-value=5.6e+02 Score=26.19 Aligned_cols=97 Identities=19% Similarity=0.235 Sum_probs=57.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcChhH--------HHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCCCCChhhHH
Q 003289 10 ALNALYHHPDDAVRMQADRWLQDFQHTIDA--------WQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVR 81 (833)
Q Consensus 10 al~~ly~~~d~~~r~~A~~~L~~~q~s~~a--------w~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~ 81 (833)
.|..+..+++++.|.+|-..|..+-.+.+. -++|..+... ..+.+++.-|...|.+.- ++.+.+.
T Consensus 58 lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s~-~lns~~Q~agLrlL~nLt------v~~~~~~ 130 (254)
T PF04826_consen 58 LIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVSS-PLNSEVQLAGLRLLTNLT------VTNDYHH 130 (254)
T ss_pred HHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHccC------CCcchhh
Confidence 455555677888888888877765443221 2245555544 346678888999998872 2333334
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 003289 82 GLQDSLNTLLKKFHKGPPKVRTQISIAVAALA 113 (833)
Q Consensus 82 ~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~ 113 (833)
.+...+-.++.-...|+..++.+.-.+|.-+.
T Consensus 131 ~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 131 MLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred hHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 44444443333334477777777666665554
No 148
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=31.99 E-value=83 Score=28.62 Aligned_cols=119 Identities=10% Similarity=0.078 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHhhcCCccHhhhHHHHHHHhcCC--cc----hhHHHHHHHHHHHH
Q 003289 694 TMESLCRACKYAVRTSKRF-MGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSD--PS----CASYLHNLIEALFK 766 (833)
Q Consensus 694 v~e~~~~~~~~~~~~~~~~-~~~~l~~l~~~l~~~~~~~~~~~~L~~~~~li~~fg~~--~~----~~~~~~~~~~~l~~ 766 (833)
|+.++|.++..+....-|. -..+++.++..+... ......+|.++..+.+.+++. .. -...+.+.+..-..
T Consensus 4 i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~--~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~ 81 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSS--PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSP 81 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhhCchHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHH
Confidence 4455666666544432222 223444444432221 112235677788888877751 11 12233333333344
Q ss_pred HHHHhhcc-c-ccCCc-CCchHHHHHHHHHHHHhhCCC-ccCCcCCcHHHHH
Q 003289 767 RTTCLLTS-I-EEFTS-RPDVADDCFLLASRCIRYCPQ-LFIPSSVFPSLVD 814 (833)
Q Consensus 767 ~~~~~l~~-~-~~~~~-~pd~~~~~f~l~~~~~~~~p~-~~~~~~~l~~~~~ 814 (833)
.++.++.+ . ..... +++++...++.+..+++..|- .+..++.++.+++
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~ 133 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQ 133 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHH
Confidence 44444332 1 11222 378899999999999884442 2334443443333
No 149
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=31.84 E-value=6.4e+02 Score=26.63 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=21.2
Q ss_pred hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 003289 532 ILASVLSILTSGMSTSEDTAAAAALAFRHICD 563 (833)
Q Consensus 532 ~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~ 563 (833)
+..+..+.++...+... +...+++++..+|.
T Consensus 2 ~y~~l~~ll~~s~~~~p-~~~s~~~~l~~v~~ 32 (310)
T cd05134 2 YYSPLRDLLLKSADVEP-VSASAAHILGEVCR 32 (310)
T ss_pred ccHHHHHHHHhCcccCC-cchhHHHHHHHhCc
Confidence 44566677776664444 66778888888886
No 150
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.61 E-value=9.7e+02 Score=28.67 Aligned_cols=89 Identities=16% Similarity=0.220 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHh
Q 003289 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAV 584 (833)
Q Consensus 505 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l 584 (833)
.|.||+++...|-++.. -+|+...-|..++..|+.- +.|. |...|..||..+|-+--+-+.++...+.+.+.+
T Consensus 156 s~yVRk~AA~AIpKLYs---Ld~e~k~qL~e~I~~LLaD-~spl-VvgsAv~AF~evCPerldLIHknyrklC~ll~d-- 228 (968)
T KOG1060|consen 156 SPYVRKTAAHAIPKLYS---LDPEQKDQLEEVIKKLLAD-RSPL-VVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPD-- 228 (968)
T ss_pred cHHHHHHHHHhhHHHhc---CChhhHHHHHHHHHHHhcC-CCCc-chhHHHHHHHHhchhHHHHhhHHHHHHHhhccc--
Confidence 58999999999887654 2343222455566655331 2344 999999999999876556566776555555433
Q ss_pred cCcCCCCCCHhhHHHHHHHHHHH
Q 003289 585 NGEGSLKVSAEDSLHLVEALSMV 607 (833)
Q Consensus 585 ~~~~~~~l~~~~~~~l~eai~~v 607 (833)
++...+..+++.+.+-
T Consensus 229 -------vdeWgQvvlI~mL~RY 244 (968)
T KOG1060|consen 229 -------VDEWGQVVLINMLTRY 244 (968)
T ss_pred -------hhhhhHHHHHHHHHHH
Confidence 3445566666666544
No 151
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=31.42 E-value=5.3e+02 Score=25.61 Aligned_cols=47 Identities=15% Similarity=0.045 Sum_probs=36.9
Q ss_pred hhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHH
Q 003289 566 RKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVD 615 (833)
Q Consensus 566 ~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~ 615 (833)
++.+..|++-++-.+.....+. .++.+.+..+..|+=.|+..++.++
T Consensus 146 k~~~~kh~~~lL~~Yi~~~~~~---~l~~~vr~~L~pGiy~l~d~~s~~e 192 (223)
T PF10441_consen 146 KKSLRKHAPYLLANYISLQLKY---TLPPEVREALMPGIYALFDVCSQHE 192 (223)
T ss_pred HHHHHhHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHhCCHHH
Confidence 4556678888887776665443 5889999999999999999988666
No 152
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=30.85 E-value=3.8e+02 Score=24.87 Aligned_cols=73 Identities=15% Similarity=0.047 Sum_probs=43.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHH
Q 003289 8 KEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSL 87 (833)
Q Consensus 8 ~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~~lr~~L 87 (833)
-.+++.+- -.+++..+++.+.|.... +-...-|+.+|...-.++.||.||-..|+. .+.++....--.|
T Consensus 42 p~~L~sv~-w~~~~~~~e~~~lL~~W~--~~~~~~aL~LL~~~~~~~~vr~yAv~~L~~--------~~~~~l~~ylpQL 110 (152)
T cd00864 42 PKLLKSVN-WNDDEEVSELYQLLKWWA--PLSPEDALELLSPKYPDPVVRQYAVRVLES--------ASDDELLLYLPQL 110 (152)
T ss_pred HHHHHHcc-CCCHHHHHHHHHHHhcCC--CCCHHHHHHHcCCcCCCHHHHHHHHHHHHh--------CCHHHHHHHHHHH
Confidence 34444442 257777788888777653 233457788887544567888888877763 3555444333344
Q ss_pred HHHH
Q 003289 88 NTLL 91 (833)
Q Consensus 88 l~~l 91 (833)
++.+
T Consensus 111 VQaL 114 (152)
T cd00864 111 VQAL 114 (152)
T ss_pred HHHH
Confidence 4444
No 153
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.06 E-value=7.2e+02 Score=27.85 Aligned_cols=121 Identities=11% Similarity=0.108 Sum_probs=78.8
Q ss_pred CCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcc-CC-CChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHH
Q 003289 464 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KL-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILT 541 (833)
Q Consensus 464 ~~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~-~l-~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~ 541 (833)
+..|..+=...-.+..+...-.-.....+..++.++. +. .+...+|..++..+|..+.. ..+. ...+-+.++..+.
T Consensus 228 s~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~-~P~k-v~th~~~~ldaii 305 (533)
T KOG2032|consen 228 SEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASG-APDK-VRTHKTTQLDAII 305 (533)
T ss_pred hhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhcc-CcHH-HHHhHHHHHHHHH
Confidence 3456555444444444433322234567788887764 33 23569999999999998776 2111 1246677788888
Q ss_pred hccCCCH--HHHHHHHHHHHHHHHHhh-hhhhcCHHHHHHHHHHHhcC
Q 003289 542 SGMSTSE--DTAAAAALAFRHICDDCR-KKLCGYLDGLYNVYRTAVNG 586 (833)
Q Consensus 542 ~~l~~~~--~v~~~A~~al~~l~~~~~-~~l~~~l~~ll~~l~~~l~~ 586 (833)
.|+.++. +|.-.|-+++..+.+... ..+.+|+-.+--.+.+++..
T Consensus 306 ~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~s 353 (533)
T KOG2032|consen 306 RGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDS 353 (533)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHh
Confidence 8876542 599999999988876543 46778877777777777764
No 154
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.42 E-value=1.7e+02 Score=31.15 Aligned_cols=88 Identities=17% Similarity=0.173 Sum_probs=49.7
Q ss_pred cHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhh-
Q 003289 491 VMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKK- 568 (833)
Q Consensus 491 ~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~- 568 (833)
.+|-++..++. .++.+++.++..||..+--=....-..+--|++++.++.-++++. +|+-.|..|++.+..+.+-.
T Consensus 209 ~lpvLVsll~s--~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~ 286 (550)
T KOG4224|consen 209 GLPVLVSLLKS--GDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQR 286 (550)
T ss_pred Cchhhhhhhcc--CChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhh
Confidence 35555554442 267788888887776643111110000122445555666677653 59999999999999765432
Q ss_pred -hh--cCHHHHHHHH
Q 003289 569 -LC--GYLDGLYNVY 580 (833)
Q Consensus 569 -l~--~~l~~ll~~l 580 (833)
+. .-++.++..+
T Consensus 287 eiv~ag~lP~lv~Ll 301 (550)
T KOG4224|consen 287 EIVEAGSLPLLVELL 301 (550)
T ss_pred HHHhcCCchHHHHHH
Confidence 22 4455555444
No 155
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=28.14 E-value=9.9e+02 Score=27.71 Aligned_cols=68 Identities=13% Similarity=0.352 Sum_probs=40.8
Q ss_pred HHHHHhhccCC---CChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHH
Q 003289 492 MPQVMALLPKL---PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST-SEDTAAAAALAFRHICD 563 (833)
Q Consensus 492 l~~l~~~l~~l---~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~-~~~v~~~A~~al~~l~~ 563 (833)
.+++|+.+.++ ..++.+..++++.+-+|.+|+..+-- +...++..+...+.. |+ .+...-.++..++.
T Consensus 190 F~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wiPl~yI---feTnIieLv~~~f~s~pd-~r~~tl~CLtEi~~ 261 (1053)
T COG5101 190 FPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLDYI---FETNIIELVLEHFNSMPD-TRVATLSCLTEIVD 261 (1053)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhCchhHH---HHHHHHHHHHHHhccCCc-hhHHHHHHHHHHHh
Confidence 56666665432 33677888888888888888876533 556666666544332 33 44444555554443
No 156
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=26.58 E-value=4.7e+02 Score=23.47 Aligned_cols=78 Identities=6% Similarity=0.014 Sum_probs=49.0
Q ss_pred HHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHH--HHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhc
Q 003289 534 ASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLD--GLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (833)
Q Consensus 534 ~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~--~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (833)
..++..+-.-+.+++ .++.+|...+..+...|...+...+. .+++.+.+++... ...+...+.++.+-+..-...
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~--~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS--PKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC--CCCCHHHHHHHHHHHHHHHHH
Confidence 444555544454432 39999999999999999887653322 4565566666542 134566777777777655555
Q ss_pred CCh
Q 003289 611 LPQ 613 (833)
Q Consensus 611 ~~~ 613 (833)
.+.
T Consensus 114 f~~ 116 (133)
T cd03561 114 FGG 116 (133)
T ss_pred hcC
Confidence 543
No 157
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.54 E-value=4.5e+02 Score=30.56 Aligned_cols=119 Identities=12% Similarity=0.146 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhccCCCChHHHHHHHHHHHHhchHH
Q 003289 443 DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKW 522 (833)
Q Consensus 443 ~~~l~~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~ 522 (833)
...+.++.+.+++-.. .-+.-|+|++..|+..+.- .++.+++++..|-.- .+.+|...-++++..-
T Consensus 409 ~~aldfLvDMfNDE~~---------~VRL~ai~aL~~Is~~l~i-~eeql~~il~~L~D~--s~dvRe~l~elL~~~~-- 474 (823)
T KOG2259|consen 409 VRALDFLVDMFNDEIE---------VVRLKAIFALTMISVHLAI-REEQLRQILESLEDR--SVDVREALRELLKNAR-- 474 (823)
T ss_pred HHHHHHHHHHhccHHH---------HHHHHHHHHHHHHHHHhee-cHHHHHHHHHHHHhc--CHHHHHHHHHHHHhcC--
Confidence 4577777777765321 2356799999999998643 456788888877543 4778888877777531
Q ss_pred HhhCCCChhhHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHH
Q 003289 523 FDAASSDPSILASVLSILTSGMST-SEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVY 580 (833)
Q Consensus 523 l~~~p~~~~~l~~~l~~l~~~l~~-~~~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l 580 (833)
-+. .+.+..++.-++.++.. |. =+..-..++.+|-+.-+..+...+..++...
T Consensus 475 ---~~d-~~~i~m~v~~lL~~L~kyPq-Drd~i~~cm~~iGqnH~~lv~s~m~rfl~kh 528 (823)
T KOG2259|consen 475 ---VSD-LECIDMCVAHLLKNLGKYPQ-DRDEILRCMGRIGQNHRRLVLSNMGRFLEKH 528 (823)
T ss_pred ---CCc-HHHHHHHHHHHHHHhhhCCC-CcHHHHHHHHHHhccChhhHHHHHHHHHHhc
Confidence 111 23667777777776654 33 3556677888888776665555555555443
No 158
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=26.12 E-value=2.9e+02 Score=29.67 Aligned_cols=102 Identities=11% Similarity=0.110 Sum_probs=61.7
Q ss_pred chHHHhhCCCChhhHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHhhhhhhcC--HHHHHHHHHHHhcCcCCCCCCH
Q 003289 519 YSKWFDAASSDPSILASVLSILTSGMST--SEDTAAAAALAFRHICDDCRKKLCGY--LDGLYNVYRTAVNGEGSLKVSA 594 (833)
Q Consensus 519 y~~~l~~~p~~~~~l~~~l~~l~~~l~~--~~~v~~~A~~al~~l~~~~~~~l~~~--l~~ll~~l~~~l~~~~~~~l~~ 594 (833)
+|+-+..+|. .-..++.++.+.+++ |. |...|-..+..++..|++.+.-. ...|.+.+..++.+
T Consensus 32 vCD~v~~~~~---~~kd~lk~i~KRln~~dph-V~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~-------- 99 (462)
T KOG2199|consen 32 VCDKVGSDPD---GGKDCLKAIMKRLNHKDPH-VVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIES-------- 99 (462)
T ss_pred HHHhhcCCCc---ccHHHHHHHHHHhcCCCcc-hHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhh--------
Confidence 3444445565 456777788777765 45 89999999999999998876533 23355555555542
Q ss_pred hhHHHHHHHHHHHHhcCChHHHH-HHHHHhhhhhHHHHHH
Q 003289 595 EDSLHLVEALSMVITELPQVDAK-KALEMLCLPVVTPLQE 633 (833)
Q Consensus 595 ~~~~~l~eai~~vi~~~~~~~~~-~~l~~l~~p~~~~l~~ 633 (833)
....++-+.+..++..-.+ +.+ +--.+++..+..+|++
T Consensus 100 ~~h~kV~~k~~~lv~eWse-e~K~Dp~lsLi~~l~~klk~ 138 (462)
T KOG2199|consen 100 KAHPKVCEKMRDLVKEWSE-EFKKDPSLSLISALYKKLKE 138 (462)
T ss_pred cccHHHHHHHHHHHHHHHH-HhccCcchhHHHHHHHHHHH
Confidence 2345566666666655433 232 2222456666666655
No 159
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=24.74 E-value=3.8e+02 Score=25.14 Aligned_cols=57 Identities=12% Similarity=0.019 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHH-HhcCcCCCCCCHhhHHHHHHHHHHHHh
Q 003289 550 TAAAAALAFRHICDDCRKKLCGYLDGLYNVYRT-AVNGEGSLKVSAEDSLHLVEALSMVIT 609 (833)
Q Consensus 550 v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~-~l~~~~~~~l~~~~~~~l~eai~~vi~ 609 (833)
+-.++...+..+....+.++...++.++..+.. ++... .-+...|..++|++..+..
T Consensus 89 i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~---~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 89 IFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESD---NSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC---CCcHHHHHHHHHHHHHHHh
Confidence 888899999999999999999999998877765 66542 1245688889998887664
No 160
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=24.08 E-value=2.9e+02 Score=24.46 Aligned_cols=66 Identities=12% Similarity=0.091 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhHHHHH---------HHHhccCCCchHHHHHHHHHHHHHhhcCCC
Q 003289 6 TVKEALNALYHHPDDAVRMQADRWLQDFQH-TIDAWQVA---------DNLLHDATSNLETLIFCSQTLRSKVQRDVE 73 (833)
Q Consensus 6 ~v~~al~~ly~~~d~~~r~~A~~~L~~~q~-s~~aw~~~---------~~LL~~~~~~~~vrffaa~~L~~ki~~~w~ 73 (833)
-+...++.|..+.|+....-|=.=|.+|-+ .|++-.++ ..|+.+ .+++||+-|..++...+..+|.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h--~d~eVr~eAL~avQklm~~~w~ 119 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNH--EDPEVRYEALLAVQKLMVNNWE 119 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS---SSHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhcCC
Confidence 344455555444566655554444444333 46555443 556653 6889999999999999998884
No 161
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=23.87 E-value=1.5e+02 Score=20.96 Aligned_cols=31 Identities=23% Similarity=0.249 Sum_probs=17.4
Q ss_pred chHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003289 2 ELQNTVKEALNALYHHPDDAVRMQADRWLQD 32 (833)
Q Consensus 2 ~~~~~v~~al~~ly~~~d~~~r~~A~~~L~~ 32 (833)
+.-+.-.+.+..+....++..|.+|.+.|.+
T Consensus 13 Gd~e~Ar~lL~evl~~~~~~q~~eA~~LL~~ 43 (44)
T TIGR03504 13 GDLEGARELLEEVIEEGDEAQRQEARALLAQ 43 (44)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3334444445544445666777777776654
No 162
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=23.67 E-value=4.3e+02 Score=22.83 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhhcCC---ccHhhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHH
Q 003289 718 GAILEEIQGLYQQHQQ---PCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASR 794 (833)
Q Consensus 718 ~~l~~~l~~~~~~~~~---~~~L~~~~~li~~fg~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~ 794 (833)
+.+++.+...+...+. -.+||++..++...|+. +...+...+..++..++. ..+|++.+...+++..
T Consensus 36 ~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~--~~~~~~~~~~~~f~~~~~--------~~~~~~r~kl~rl~~i 105 (114)
T cd03562 36 KEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRK--YKEFFSEFLVPLFLDAYE--------KVDEKTRKKLERLLNI 105 (114)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccc--hHHHHHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHH
Confidence 3444455454554432 37899999999998876 666666666665655543 3456677666666553
No 163
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=23.50 E-value=5.7e+02 Score=23.32 Aligned_cols=78 Identities=14% Similarity=0.162 Sum_probs=46.2
Q ss_pred HHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCH--HHHHHHHHHHhcCc-CCCCCCHhhHHHHHHHHHHHHh
Q 003289 534 ASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYL--DGLYNVYRTAVNGE-GSLKVSAEDSLHLVEALSMVIT 609 (833)
Q Consensus 534 ~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l--~~ll~~l~~~l~~~-~~~~l~~~~~~~l~eai~~vi~ 609 (833)
..++..+..-+.+++ .++.+|-..+..+++.|+..+...+ ..+++.+..++... .....+...+.++.+-+-.-..
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 345555655565543 3899999999999999988765433 23555555555320 0012445666666665554444
Q ss_pred cC
Q 003289 610 EL 611 (833)
Q Consensus 610 ~~ 611 (833)
++
T Consensus 117 ~f 118 (139)
T cd03567 117 EL 118 (139)
T ss_pred Hh
Confidence 44
No 164
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=23.30 E-value=1.8e+03 Score=29.07 Aligned_cols=75 Identities=13% Similarity=0.150 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHh--hcCChHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHhhcCCccHhhhHHHHHHHhc
Q 003289 673 AIQRLWPIFKAIFDI--RAWDMRTMESLCRACKYAVRTSKRFMG-ITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFG 748 (833)
Q Consensus 673 ~~~~~~~~l~~il~~--~~~~~~v~e~~~~~~~~~~~~~~~~~~-~~l~~l~~~l~~~~~~~~~~~~L~~~~~li~~fg 748 (833)
+++..++.+..+.+. ...++.|++-.+.+++.++..+..+.. ..+..++.++...-. ....+.|+++..++...+
T Consensus 428 vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~-~ev~~aL~vL~~L~~~~~ 505 (1426)
T PF14631_consen 428 VLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNS-QEVDAALDVLCELAEKNP 505 (1426)
T ss_dssp HHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHhccH
Confidence 334444444444443 256788899999999998887765542 345556665543322 234567888888886544
No 165
>PRK04964 hypothetical protein; Provisional
Probab=23.15 E-value=1.7e+02 Score=22.21 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=33.0
Q ss_pred HHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCC-------CHHHHHHHHHHHHHHH
Q 003289 512 VCLTIGAYSKWFDAASSDPSILASVLSILTSGMST-------SEDTAAAAALAFRHIC 562 (833)
Q Consensus 512 ~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~-------~~~v~~~A~~al~~l~ 562 (833)
+|+.+.+....+.+-.+ .++|..+...++.+++ |++|+..|++|-.++.
T Consensus 4 yCelvR~~ya~IgSGd~--gYiP~Ai~ca~k~L~~IAad~~Lp~~vRe~AAfAAANLl 59 (66)
T PRK04964 4 YCELVRKRYAEIGSGDL--GYVPDALGCVLKALNEIAADEALPESVREKAAYAAANLL 59 (66)
T ss_pred HHHHHHHHHHHhcCCcc--ccCcHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHH
Confidence 46666665555554322 3888888887776642 4469999999987764
No 166
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.13 E-value=1.1e+03 Score=26.50 Aligned_cols=99 Identities=18% Similarity=0.243 Sum_probs=72.3
Q ss_pred hHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHH-HHHhcCcCCCCCCHhhHHHHHHHHHHHHh
Q 003289 532 ILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVY-RTAVNGEGSLKVSAEDSLHLVEALSMVIT 609 (833)
Q Consensus 532 ~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l-~~~l~~~~~~~l~~~~~~~l~eai~~vi~ 609 (833)
.+..++..+.....+|. +++..|+..+.+....|+.....|...+++.+ ..+..+ ...+.....|.++..+..
T Consensus 255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~-----~~~~V~leam~~Lt~v~~ 329 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDD-----LNEEVQLEAMKCLTMVLE 329 (533)
T ss_pred cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcC-----CccHHHHHHHHHHHHHHH
Confidence 78888888877777775 69999999999999988887777777666544 444432 346788889999988887
Q ss_pred cCChHHHHHHHHHhhhhhHHHHHHHHhcCC
Q 003289 610 ELPQVDAKKALEMLCLPVVTPLQEIINQGP 639 (833)
Q Consensus 610 ~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~ 639 (833)
...+.. +..++-++.-++++....+.
T Consensus 330 ~~~~~~----l~~~~l~ialrlR~l~~se~ 355 (533)
T KOG2032|consen 330 KASNDD----LESYLLNIALRLRTLFDSED 355 (533)
T ss_pred hhhhcc----hhhhchhHHHHHHHHHHhcC
Confidence 765444 44556666667777766554
No 167
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=22.73 E-value=3.9e+02 Score=33.21 Aligned_cols=151 Identities=16% Similarity=0.213 Sum_probs=0.0
Q ss_pred ChhhhHHhHhhhhcccccCCccchhhhhhhchhHHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHH
Q 003289 398 SLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCI 477 (833)
Q Consensus 398 ~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l 477 (833)
.+|+..++-.++.+ .+++. |++.++..+.+.+.+.+...+- ..+-.-.-||-.++
T Consensus 893 seDd~~d~i~~icE------------------~eLl~------gek~lLg~f~piv~e~c~n~~~-~sdp~Lq~AAtLaL 947 (1251)
T KOG0414|consen 893 SEDDLADLISGICE------------------KELLY------GEKSLLGRFAPIVVEGCRNPGL-FSDPELQAAATLAL 947 (1251)
T ss_pred cchhHHHHHHHHHH------------------HHHhc------ChHHHHHHHHHHHHHHhcCCCc-CCCHHHHHHHHHHH
Q ss_pred HHhhcccCccccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHH
Q 003289 478 RAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAAL 556 (833)
Q Consensus 478 ~~i~e~~~~~~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~ 556 (833)
+.+----.+=.+..++-+|..+.+-| .|++|.++.-.+|.++ .+.|. ++.+.-+.+...++++. .|+..|..
T Consensus 948 ~klM~iSa~fces~l~llftimeksp-~p~IRsN~VvalgDla---v~fpn---lie~~T~~Ly~rL~D~~~~vRkta~l 1020 (1251)
T KOG0414|consen 948 GKLMCISAEFCESHLPLLFTIMEKSP-SPRIRSNLVVALGDLA---VRFPN---LIEPWTEHLYRRLRDESPSVRKTALL 1020 (1251)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhcCC-Cceeeecchheccchh---hhccc---ccchhhHHHHHHhcCccHHHHHHHHH
Q ss_pred HHHHHHHHhhhhhhcCHHHHHHHH
Q 003289 557 AFRHICDDCRKKLCGYLDGLYNVY 580 (833)
Q Consensus 557 al~~l~~~~~~~l~~~l~~ll~~l 580 (833)
.+..+.-.---.+.+++...--.+
T Consensus 1021 vlshLILndmiKVKGql~eMA~cl 1044 (1251)
T KOG0414|consen 1021 VLSHLILNDMIKVKGQLSEMALCL 1044 (1251)
T ss_pred HHHHHHHhhhhHhcccHHHHHHHh
No 168
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=22.71 E-value=1.4e+03 Score=27.54 Aligned_cols=149 Identities=14% Similarity=0.187 Sum_probs=82.0
Q ss_pred hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH----hhhhhh-cCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHH
Q 003289 532 ILASVLSILTSGMSTSEDTAAAAALAFRHICDD----CRKKLC-GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSM 606 (833)
Q Consensus 532 ~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~----~~~~l~-~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~ 606 (833)
++|.++.+++.+ ++. ++.=|...+.++-.. ..+.+. ...+.+...+..+ +.+ ..+.......-+++..
T Consensus 121 ~lPG~~~~Lf~~--~~~-~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~i-~~~---~~~~~~~~~fW~g~~~ 193 (727)
T PF12726_consen 121 LLPGMTYFLFDG--NPE-RRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYRI-SPN---NYNPDSVIRFWSGFSL 193 (727)
T ss_pred ccchhhhhhhcC--CHH-HHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHHh-ccC---CCChhHHHHHHHHHHH
Confidence 788888888776 555 888888888887543 233443 2344455555555 221 4566677889999999
Q ss_pred HHhcCChHHHHHHHHHh-hhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHHHHHH--HHHHH
Q 003289 607 VITELPQVDAKKALEML-CLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLW--PIFKA 683 (833)
Q Consensus 607 vi~~~~~~~~~~~l~~l-~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~--~~l~~ 683 (833)
++..++.+....++..+ +.|+..-+-+.+......+-....+.+...|+..+.-|...-+|.....+++.+. |.+..
T Consensus 194 Il~~ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~~FW~~~~~~~p~~ild~If~np~f~~ 273 (727)
T PF12726_consen 194 ILRLLDKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLGSDFWDAMGPISPQVILDQIFDNPAFKK 273 (727)
T ss_pred HHHHccHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCHHHHhcccCCCCHHHHHHHHhCChHHHH
Confidence 99999988777666551 2334444444443321100000011122233444444443323333344555555 55555
Q ss_pred HHHh
Q 003289 684 IFDI 687 (833)
Q Consensus 684 il~~ 687 (833)
.+..
T Consensus 274 ~L~~ 277 (727)
T PF12726_consen 274 LLLQ 277 (727)
T ss_pred HHHh
Confidence 5544
No 169
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=22.03 E-value=2.6e+03 Score=30.40 Aligned_cols=170 Identities=9% Similarity=0.057 Sum_probs=94.8
Q ss_pred HhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCccc
Q 003289 564 DCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQ 643 (833)
Q Consensus 564 ~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~ 643 (833)
+-...+.||+..|+....++.... -.+.+-.+++.++=+-++....+....-+..++.++++.+...+.....
T Consensus 622 ~nervl~phv~~Ii~~smela~~a----~eplnYf~LLraLFRsigGg~~d~ly~e~lplL~~lLe~ln~l~~~~~s--- 694 (3550)
T KOG0889|consen 622 ENERVLRPHVHDIISTSMELATTA----PEPLNYFQLLRALFRSIGGGAFDSLYREVLPLLPNLLEILNHLLSSFHS--- 694 (3550)
T ss_pred cchhhcccchhHHHHHHHHHHhcC----CcchhHHHHHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHhhccCc---
Confidence 344677899999998877765532 1244566777777766666655554444455666666666666554432
Q ss_pred ccCchhhhHHHHH-HHHhhhccCCcccHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhhh-hhhhhHHHHH
Q 003289 644 KKHPRDLTVHIDR-FAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKR-FMGITIGAIL 721 (833)
Q Consensus 644 ~~~~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~~~~-~~~~~l~~l~ 721 (833)
..++++ ..+. ++.-+|- ....+++.-+|..+... ....++++-...+.+..++..+-| ++.|.+.++.
T Consensus 695 -~~mkdL--fvELclTvPvRL----S~Llpylp~LM~PLv~a---Lkgs~~lvsQgLRtlelcvDnltPefL~~~mepv~ 764 (3550)
T KOG0889|consen 695 -QGMKDL--FVELCLTLPVRL----SSLLPYLPLLMKPLVFA---LKGSPELVSQGLRTLELCVDNLTPEFLDPIMEPVR 764 (3550)
T ss_pred -cchHHH--HHHHHHhhhHHH----HHhhhhhhhhhhHHHHH---hcCCHHHHHHHHhHHHHHHhcCChHhhhHHHHHHH
Confidence 134554 2322 2211111 11233333333322222 245678888777777777776554 3455554444
Q ss_pred HHH----HHHHhhcCCccHhhhHHHHHHHhcCC
Q 003289 722 EEI----QGLYQQHQQPCFLYLSSEVIKIFGSD 750 (833)
Q Consensus 722 ~~l----~~~~~~~~~~~~L~~~~~li~~fg~~ 750 (833)
+-+ ....+..|..++-..+-.+.+++|+.
T Consensus 765 ~~lmqaLw~~l~~~~~~s~s~~a~rILGKlgG~ 797 (3550)
T KOG0889|consen 765 DDLMQALWSHLRPVPNYSYSHRALRILGKLGGR 797 (3550)
T ss_pred HHHHHHHHHhccCCCCchHHHHHHHHHHhhcCc
Confidence 433 33333434456666777888888863
No 170
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=21.98 E-value=1.2e+03 Score=28.25 Aligned_cols=151 Identities=11% Similarity=0.040 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcc--ccccHHHHHhhccCCCChHHHHHHHHHHHHhchHH
Q 003289 445 TLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV--EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKW 522 (833)
Q Consensus 445 ~l~~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~--~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~ 522 (833)
...++.+.+.+.+..... +....-.|+|.+.+..+.+.+... ....+++++....+- +-..|.|++..+..+++-
T Consensus 511 ~~~~~~~~~~~l~~~~l~-d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~--~y~~R~t~l~si~~la~v 587 (759)
T KOG0211|consen 511 GVEFFDEKLAELLRTWLP-DHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQD--NYLVRMTTLFSIHELAEV 587 (759)
T ss_pred hhHHhhHHHHHHHHhhhh-hhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCc--ccchhhHHHHHHHHHHHH
Confidence 344444555544432111 223345688888888888887732 234456666654431 456777777777766665
Q ss_pred HhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhh-hcCHHHHHHHHHHHhcCcCCCCCCHhhHHHH
Q 003289 523 FDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKL-CGYLDGLYNVYRTAVNGEGSLKVSAEDSLHL 600 (833)
Q Consensus 523 l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l-~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l 600 (833)
+...- ....+++.+.....++. .|+-.+|+.|.++........ ..++-++++. +... -+.+.|.+.
T Consensus 588 ~g~ei----~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~---L~~d-----~~~dvr~~a 655 (759)
T KOG0211|consen 588 LGQEI----TCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLET---LSSD-----QELDVRYRA 655 (759)
T ss_pred hccHH----HHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHH---hccC-----cccchhHHH
Confidence 54321 33444455555555553 399999999999976543321 1233333333 2221 124566777
Q ss_pred HHHHHHHHhc
Q 003289 601 VEALSMVITE 610 (833)
Q Consensus 601 ~eai~~vi~~ 610 (833)
..+.+.+...
T Consensus 656 ~~a~~~i~l~ 665 (759)
T KOG0211|consen 656 ILAFGSIELS 665 (759)
T ss_pred HHHHHHHHHH
Confidence 7777755433
No 171
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=21.78 E-value=4.1e+02 Score=25.26 Aligned_cols=46 Identities=15% Similarity=0.021 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHHH
Q 003289 18 PDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLR 65 (833)
Q Consensus 18 ~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L~ 65 (833)
.|++..++|.+.|.+... -...-|++||...-.+..||-||-..|+
T Consensus 51 ~~~~~v~e~~~lL~~W~~--i~~~~aLeLL~~~f~d~~VR~yAV~~L~ 96 (171)
T cd00872 51 NKRDDVAQMYQLLKRWPK--LKPEQALELLDCNFPDEHVREFAVRCLE 96 (171)
T ss_pred CCHHHHHHHHHHHHCCCC--CCHHHHHHHCCCcCCCHHHHHHHHHHHH
Confidence 455556666666655432 2233566666543345566777666655
No 172
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=21.69 E-value=1.4e+03 Score=27.24 Aligned_cols=139 Identities=13% Similarity=0.108 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCccc---c-----ccHH----HHHhhccCCCChHHHHHHH
Q 003289 445 TLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE---A-----EVMP----QVMALLPKLPQQPQLLQTV 512 (833)
Q Consensus 445 ~l~~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~~---~-----~~l~----~l~~~l~~l~~~~~v~~t~ 512 (833)
+.++....+...+.+.+..+..--+.--++.++++++.++.... + .... .++..+..++...-+|...
T Consensus 638 ~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsav 717 (980)
T KOG2021|consen 638 ILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAV 717 (980)
T ss_pred HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHH
Confidence 55655555554444322212233445566778888988876532 1 1122 2333333333333344444
Q ss_pred HHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCH--HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhc
Q 003289 513 CLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE--DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 585 (833)
Q Consensus 513 ~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~--~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~ 585 (833)
=.+++|.-.-+... ...++|+++..+++.-+-.+ ++-.--...+.++=.+|.+-+...+++++..+...+.
T Consensus 718 rft~hRmI~~lg~~--vlPfipklie~lL~s~d~kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~rIfsvi~ 790 (980)
T KOG2021|consen 718 RFTFHRMIPILGNK--VLPFIPKLIELLLSSTDLKEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLNRIFSVIE 790 (980)
T ss_pred HHHHHHHHHhcchh--hhcchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455554444432 12278888888765433222 2333334444555566777666777788887777765
No 173
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=21.59 E-value=6.3e+02 Score=23.10 Aligned_cols=73 Identities=16% Similarity=0.212 Sum_probs=46.6
Q ss_pred HHHHHHHhhcccCcc------ccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHH-hccC
Q 003289 473 ALFCIRAISTYVSVV------EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILT-SGMS 545 (833)
Q Consensus 473 al~~l~~i~e~~~~~------~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~-~~l~ 545 (833)
||-.+.++...+... ..+++..+...+.. ..|+.|+..++.+|...+..|..+|+. ..+..+.+.|. +|..
T Consensus 61 AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~-~~~~~Vk~kil~li~~W~~~f~~~~~l-~~i~~~y~~L~~~G~~ 138 (142)
T cd03569 61 ALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT-TKNEEVRQKILELIQAWALAFRNKPQL-KYVVDTYQILKAEGHK 138 (142)
T ss_pred HHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc-cCCHHHHHHHHHHHHHHHHHhCCCccc-HHHHHHHHHHHHcCCC
Confidence 444555555555432 23566666666654 448999999999999999999888763 24555554442 4444
Q ss_pred CC
Q 003289 546 TS 547 (833)
Q Consensus 546 ~~ 547 (833)
-|
T Consensus 139 FP 140 (142)
T cd03569 139 FP 140 (142)
T ss_pred CC
Confidence 33
No 174
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=21.47 E-value=3.9e+02 Score=22.34 Aligned_cols=39 Identities=13% Similarity=0.059 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCc
Q 003289 549 DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGE 587 (833)
Q Consensus 549 ~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~ 587 (833)
.+|..||..+..+|+...+.-..--+-+...+.+.+..+
T Consensus 21 ~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~ 59 (92)
T PF07571_consen 21 ALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDP 59 (92)
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCC
Confidence 599999999999999877544333445777777766543
No 175
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=21.23 E-value=6.4e+02 Score=28.60 Aligned_cols=67 Identities=21% Similarity=0.284 Sum_probs=41.7
Q ss_pred HHHHHHHhhcccCccccccHHHHHhhccCCC-ChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCH
Q 003289 473 ALFCIRAISTYVSVVEAEVMPQVMALLPKLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE 548 (833)
Q Consensus 473 al~~l~~i~e~~~~~~~~~l~~l~~~l~~l~-~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~ 548 (833)
.|..++++.+.-+..-.+++|.++..|++.. ....+......+|.+ ..++ .|..++++|...+.+.+
T Consensus 182 LLrvlS~Vye~~P~~i~PhlP~l~~lL~q~~p~~~~ll~~l~~LI~Q------k~~e---vL~~ciP~L~g~l~ds~ 249 (851)
T KOG3723|consen 182 LLRVLSAVYEKQPQPINPHLPELLALLSQLEPEQYHLLRLLHVLIKQ------KQLE---VLQKCIPFLIGHLKDST 249 (851)
T ss_pred HHHHHHHHHhcCCCccCcccHHHHHHhcCCCHHHHHHHHHHHHHHHh------ccHH---HHHHHHHHHHHHhcccc
Confidence 5667777777776666788999999888763 333333333333332 2343 77888888776665543
No 176
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=21.09 E-value=4.5e+02 Score=24.86 Aligned_cols=47 Identities=17% Similarity=0.062 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHHHH
Q 003289 18 PDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRS 66 (833)
Q Consensus 18 ~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ 66 (833)
.|++..++|.+.|.+.. +-...-|++||...-.+..||-||-..|+.
T Consensus 58 ~~~~e~~e~~~lL~~W~--~i~~~~aLeLL~~~f~~~~VR~yAV~~L~~ 104 (166)
T cd00870 58 SDEQEVKQALELMPKWA--KIDIEDALELLSPYFTNPVVRKYAVSRLKL 104 (166)
T ss_pred CCHHHHHHHHHHHhcCC--CCCHHHHHHHcCccCCCHHHHHHHHHHHHh
Confidence 46667777888777654 333456788887544566788888777773
No 177
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=20.99 E-value=2.4e+02 Score=24.99 Aligned_cols=78 Identities=18% Similarity=0.302 Sum_probs=46.8
Q ss_pred cccCccccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHH--HHHHHHhccCCCH-HHHHHHHHHH
Q 003289 482 TYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILAS--VLSILTSGMSTSE-DTAAAAALAF 558 (833)
Q Consensus 482 e~~~~~~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~--~l~~l~~~l~~~~-~v~~~A~~al 558 (833)
..+.+++-+.+..+++.|.. +.++.+...+|.=||.|.++ +|.+...+.. +=..+..-|++++ +|+..|-.|+
T Consensus 35 ~kf~~~~~~llk~L~~lL~~-s~d~~~laVac~Dig~~vr~---~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~av 110 (119)
T PF11698_consen 35 DKFEENNFELLKKLIKLLDK-SDDPTTLAVACHDIGEFVRH---YPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAV 110 (119)
T ss_dssp GGGSSGGGHHHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHH----GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHcc-CCCcceeehhhcchHHHHHH---ChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHH
Confidence 34444444567777777632 22788888899999988765 4542222211 1123445566653 5999999999
Q ss_pred HHHHH
Q 003289 559 RHICD 563 (833)
Q Consensus 559 ~~l~~ 563 (833)
.++..
T Consensus 111 Qklm~ 115 (119)
T PF11698_consen 111 QKLMV 115 (119)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98864
No 178
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=20.72 E-value=3.1e+02 Score=20.22 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Q 003289 79 AVRGLQDSLNTLLKKFHK-GPPKVRTQISIAVAALA 113 (833)
Q Consensus 79 ~~~~lr~~Ll~~l~~~~~-~~~~v~~kL~~~la~l~ 113 (833)
+-..+-+.|.+.|..... -++-+|.++|.+|..+-
T Consensus 12 ~~~~Fp~~L~~lL~~~~~~L~p~lR~~lv~aLiLLR 47 (52)
T PF08158_consen 12 ETKDFPQELIDLLRNHHTVLDPDLRMKLVKALILLR 47 (52)
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHH
Confidence 455566677777777543 36788999999887664
No 179
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=20.16 E-value=4.4e+02 Score=25.92 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=43.3
Q ss_pred HhcCCCHHHHHHHHHHHHHHhcC--hhHHHHHHHHhccCCCchHHHHHHHHHHHHHhh
Q 003289 14 LYHHPDDAVRMQADRWLQDFQHT--IDAWQVADNLLHDATSNLETLIFCSQTLRSKVQ 69 (833)
Q Consensus 14 ly~~~d~~~r~~A~~~L~~~q~s--~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~ 69 (833)
+++-+.|+.|+-|..++...+.. ++-|.++..|.+++ --|.|++|..++....+
T Consensus 20 f~Gv~~P~~R~lak~~~~~~~~~~~~~~~~l~~~Lw~~~--~~E~r~~al~~l~~~~~ 75 (208)
T cd07064 20 FYGIKTPERRALSKPFLKESKLPDKEELWELVLELWQQP--EREYQYVAIDLLRKYKK 75 (208)
T ss_pred cCCCChHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcch--HHHHHHHHHHHHHHHHh
Confidence 56678899999999999887764 57788999999752 35799999998887644
Done!