Query 003289
Match_columns 833
No_of_seqs 186 out of 1487
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 20:05:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003289.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003289hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ibv_A Exportin-T; karyopherin 100.0 9.5E-84 3.2E-88 778.8 66.2 771 4-831 5-861 (980)
2 4hat_C Exportin-1; heat repeat 100.0 3.9E-80 1.3E-84 746.8 58.9 763 3-831 14-869 (1023)
3 2x1g_F Cadmus; transport prote 100.0 5.1E-79 1.8E-83 753.8 60.0 772 4-831 6-849 (971)
4 3gjx_A Exportin-1; transport, 100.0 2.8E-78 9.5E-83 724.5 57.4 788 3-831 26-895 (1073)
5 2x19_B Importin-13; nuclear tr 100.0 4E-76 1.4E-80 728.5 77.6 772 3-831 22-837 (963)
6 3m1i_C Exportin-1; heat repeat 100.0 1E-66 3.4E-71 646.1 63.0 775 3-831 14-869 (1049)
7 3a6p_A Exportin-5; exportin-5, 100.0 7.9E-57 2.7E-61 558.5 46.4 764 3-827 9-939 (1204)
8 1wa5_C Importin alpha RE-expor 100.0 1.8E-39 6.2E-44 398.9 55.4 715 1-828 1-778 (960)
9 4fdd_A Transportin-1; heat rep 100.0 4.6E-36 1.6E-40 365.1 50.7 674 3-821 11-721 (852)
10 2bpt_A Importin beta-1 subunit 100.0 1.9E-33 6.5E-38 343.6 58.5 695 1-821 1-733 (861)
11 1qgr_A Protein (importin beta 100.0 7E-30 2.4E-34 312.6 55.6 693 6-821 2-744 (876)
12 1ibr_B P95, importin beta-1 su 99.9 1.8E-23 6.1E-28 235.9 28.0 432 6-545 2-461 (462)
13 1u6g_C TIP120 protein, CAND1; 99.8 4E-15 1.4E-19 188.0 47.0 632 4-803 5-685 (1230)
14 4fdd_A Transportin-1; heat rep 99.6 2E-12 6.7E-17 157.0 45.7 527 193-824 105-683 (852)
15 2bpt_A Importin beta-1 subunit 99.6 1.2E-10 4E-15 141.7 53.2 442 288-821 347-835 (861)
16 1qgr_A Protein (importin beta 99.5 3E-10 1E-14 138.4 46.9 327 464-822 339-702 (876)
17 1b3u_A Protein (protein phosph 99.3 4.2E-08 1.4E-12 113.4 41.3 562 4-704 9-584 (588)
18 1u6g_C TIP120 protein, CAND1; 99.2 5.3E-09 1.8E-13 132.1 35.5 531 193-821 21-620 (1230)
19 1b3u_A Protein (protein phosph 99.1 5.1E-08 1.7E-12 112.8 32.9 481 7-607 88-585 (588)
20 1w9c_A CRM1 protein, exportin 98.5 2.4E-06 8.3E-11 87.0 15.1 114 714-831 68-187 (321)
21 1ibr_B P95, importin beta-1 su 98.3 1.3E-05 4.5E-10 89.2 19.1 269 466-749 143-441 (462)
22 2qk1_A Protein STU2; STU2P, XM 98.3 4.5E-06 1.5E-10 84.3 12.3 184 464-665 27-223 (249)
23 2vgl_B AP-2 complex subunit be 98.3 0.00039 1.3E-08 79.9 30.2 462 15-607 58-530 (591)
24 1wa5_C Importin alpha RE-expor 98.2 0.0014 4.8E-08 80.1 35.5 270 466-749 471-795 (960)
25 1w63_A Adapter-related protein 98.1 0.019 6.4E-07 66.1 40.2 460 17-608 81-576 (618)
26 2qk2_A LP04448P; mini spindles 98.0 4E-05 1.4E-09 77.1 13.0 177 464-664 26-207 (242)
27 2qk1_A Protein STU2; STU2P, XM 97.8 0.00042 1.4E-08 69.7 16.0 167 464-636 72-247 (249)
28 2x1g_F Cadmus; transport prote 97.8 0.088 3E-06 64.2 39.7 250 466-728 599-885 (971)
29 2qk2_A LP04448P; mini spindles 97.6 0.002 6.8E-08 64.5 18.2 187 505-720 28-219 (242)
30 3ibv_A Exportin-T; karyopherin 97.4 0.038 1.3E-06 66.9 28.1 153 545-709 712-872 (980)
31 4b8j_A Importin subunit alpha- 97.3 0.22 7.7E-06 55.8 32.3 387 223-707 76-496 (528)
32 2x19_B Importin-13; nuclear tr 97.2 0.004 1.4E-07 76.1 16.7 281 508-821 423-736 (963)
33 1w63_A Adapter-related protein 97.1 0.13 4.5E-06 59.0 26.9 228 465-721 119-356 (618)
34 2vgl_A Adaptor protein complex 97.0 0.74 2.5E-05 52.6 37.2 127 16-153 84-216 (621)
35 1wa5_B Importin alpha subunit; 96.8 0.041 1.4E-06 62.0 19.9 221 465-708 185-413 (530)
36 1wa5_B Importin alpha subunit; 96.8 0.033 1.1E-06 62.8 18.5 297 466-800 144-460 (530)
37 4b8j_A Importin subunit alpha- 96.8 0.042 1.5E-06 61.8 19.3 222 465-708 172-401 (528)
38 2vgl_B AP-2 complex subunit be 96.6 0.27 9.2E-06 56.0 24.6 129 464-608 97-230 (591)
39 2jdq_A Importin alpha-1 subuni 96.6 0.1 3.5E-06 57.1 20.1 219 464-708 118-348 (450)
40 4hat_C Exportin-1; heat repeat 96.5 0.039 1.3E-06 66.9 17.4 290 505-821 466-811 (1023)
41 2z6g_A B-catenin; FULL-length, 96.5 0.63 2.1E-05 54.9 27.4 494 6-612 116-666 (780)
42 3m1i_C Exportin-1; heat repeat 96.4 0.12 4.2E-06 63.4 21.2 205 505-728 466-697 (1049)
43 3gjx_A Exportin-1; transport, 96.3 0.058 2E-06 65.3 17.1 299 505-821 492-837 (1073)
44 2vgl_A Adaptor protein complex 96.3 0.48 1.6E-05 54.2 24.0 136 465-608 123-269 (621)
45 2jdq_A Importin alpha-1 subuni 96.0 0.093 3.2E-06 57.4 15.4 220 465-708 162-391 (450)
46 2iw3_A Elongation factor 3A; a 95.9 0.14 4.8E-06 60.8 17.0 222 471-708 70-325 (986)
47 2z6g_A B-catenin; FULL-length, 95.5 5.6 0.00019 46.8 34.0 251 16-301 160-428 (780)
48 3ul1_B Importin subunit alpha- 95.4 3.3 0.00011 45.9 25.4 218 464-706 243-477 (510)
49 3tpo_A Importin subunit alpha- 95.2 5 0.00017 44.7 27.6 221 465-705 263-495 (529)
50 4hxt_A De novo protein OR329; 95.1 0.49 1.7E-05 46.6 16.0 218 465-708 14-242 (252)
51 3tpo_A Importin subunit alpha- 94.5 3.5 0.00012 46.0 22.7 298 464-796 173-496 (529)
52 3ul1_B Importin subunit alpha- 94.2 3.1 0.00011 46.2 21.2 298 464-796 154-477 (510)
53 3u0r_A Apoptosis inhibitor 5; 93.9 6.2 0.00021 42.2 20.9 268 505-805 41-366 (507)
54 1oyz_A Hypothetical protein YI 93.9 5.8 0.0002 39.7 22.1 213 7-246 25-248 (280)
55 1xqr_A HSPBP1 protein; armadil 93.3 5 0.00017 40.7 19.0 129 470-610 57-197 (296)
56 2of3_A ZYG-9; multifunctional 93.2 0.96 3.3E-05 44.9 12.9 137 327-523 98-238 (266)
57 4db8_A Armadillo-repeat protei 93.2 1.4 4.9E-05 43.3 14.7 216 465-704 24-248 (252)
58 4hxt_A De novo protein OR329; 92.9 2 6.9E-05 42.0 15.4 221 7-251 4-244 (252)
59 2iw3_A Elongation factor 3A; a 92.8 0.68 2.3E-05 55.0 12.9 172 429-609 115-324 (986)
60 2z6h_A Catenin beta-1, beta-ca 92.7 17 0.00058 41.5 39.0 135 466-613 196-340 (644)
61 4db6_A Armadillo repeat protei 92.7 0.34 1.2E-05 46.4 8.8 139 464-611 23-169 (210)
62 1w9c_A CRM1 protein, exportin 91.7 4.1 0.00014 41.4 15.4 147 194-348 45-199 (321)
63 1xqr_A HSPBP1 protein; armadil 91.6 1.1 3.8E-05 45.6 11.5 137 465-611 94-240 (296)
64 3ltm_A Alpha-REP4; protein eng 90.9 5.5 0.00019 37.8 15.4 109 464-607 30-139 (211)
65 4db6_A Armadillo repeat protei 90.6 1.6 5.6E-05 41.5 11.2 136 464-608 65-208 (210)
66 3ltj_A Alpharep-4; protein eng 89.8 4.2 0.00014 38.3 13.3 109 464-607 56-165 (201)
67 4db8_A Armadillo-repeat protei 89.7 0.79 2.7E-05 45.3 8.3 135 465-610 66-210 (252)
68 3ltj_A Alpharep-4; protein eng 88.9 13 0.00044 34.8 16.0 109 464-607 25-134 (201)
69 2z6h_A Catenin beta-1, beta-ca 85.5 54 0.0019 37.1 37.5 254 14-301 22-292 (644)
70 1jdh_A Beta-catenin; beta-cate 81.3 67 0.0023 35.0 40.2 135 466-613 199-343 (529)
71 1oyz_A Hypothetical protein YI 80.4 27 0.00094 34.5 14.6 117 464-607 102-219 (280)
72 1xm9_A Plakophilin 1; armadill 79.8 70 0.0024 34.4 24.5 110 465-584 14-136 (457)
73 3now_A UNC-45 protein, SD10334 79.7 99 0.0034 36.0 35.0 129 474-610 268-409 (810)
74 4atg_A TAF6; transcription, TF 78.3 44 0.0015 31.2 16.2 159 447-634 10-179 (196)
75 3ltm_A Alpha-REP4; protein eng 76.0 51 0.0017 30.7 16.5 171 7-204 21-200 (211)
76 4ffb_C Protein STU2; tubulin f 75.1 34 0.0012 34.0 13.3 186 594-799 23-214 (278)
77 1vsy_4 Proteasome activator BL 74.1 1.2E+02 0.004 35.4 18.9 299 466-800 103-458 (799)
78 3nmw_A APC variant protein; AR 73.8 87 0.003 32.3 16.5 221 468-706 47-291 (354)
79 4ady_A RPN2, 26S proteasome re 66.1 87 0.003 36.9 15.3 123 468-606 593-716 (963)
80 2db0_A 253AA long hypothetical 61.8 32 0.0011 31.6 8.3 119 472-610 126-247 (253)
81 3oc3_A Helicase MOT1, MOT1; re 55.9 88 0.003 34.4 11.7 85 467-562 242-327 (800)
82 3nmw_A APC variant protein; AR 54.2 60 0.0021 33.6 10.5 142 465-613 183-338 (354)
83 3oc3_A Helicase MOT1, MOT1; re 54.0 54 0.0018 36.0 9.7 166 464-663 185-366 (800)
84 1jdh_A Beta-catenin; beta-cate 50.5 2.7E+02 0.0091 30.0 38.1 255 12-301 23-295 (529)
85 1xm9_A Plakophilin 1; armadill 48.8 2.7E+02 0.0093 29.6 20.9 112 466-582 57-196 (457)
86 3tt9_A Plakophilin-2; cell adh 48.6 82 0.0028 30.3 9.7 136 465-607 64-227 (233)
87 3nmz_A APC variant protein; pr 48.1 63 0.0021 34.8 9.7 141 465-612 299-453 (458)
88 4ffb_C Protein STU2; tubulin f 44.1 1.6E+02 0.0054 28.9 11.6 136 465-612 67-215 (278)
89 2db0_A 253AA long hypothetical 42.1 2.1E+02 0.0072 26.4 18.3 198 464-704 43-243 (253)
90 3tjz_B Coatomer subunit gamma; 39.6 35 0.0012 35.4 5.7 104 464-585 79-186 (355)
91 1te4_A Conserved protein MTH18 38.3 86 0.0029 26.6 7.4 51 13-66 49-99 (131)
92 4atg_A TAF6; transcription, TF 37.7 2.5E+02 0.0086 26.0 13.6 131 443-580 39-180 (196)
93 4ady_A RPN2, 26S proteasome re 37.0 1.3E+02 0.0046 35.4 10.5 53 550-613 628-680 (963)
94 3grl_A General vesicular trans 36.6 4.9E+02 0.017 29.1 16.1 109 444-567 21-155 (651)
95 3l6x_A Catenin delta-1; cateni 32.2 5.5E+02 0.019 28.3 24.3 327 446-800 50-435 (584)
96 1x5b_A Signal transducing adap 31.2 2.1E+02 0.007 25.7 8.8 68 534-605 51-121 (163)
97 1sz9_A PCF11 protein; RNA poly 30.6 2.7E+02 0.0093 24.3 10.0 84 718-811 42-130 (144)
98 2of3_A ZYG-9; multifunctional 27.5 4.4E+02 0.015 25.7 19.5 167 52-251 58-239 (266)
99 3ldz_A STAM-1, signal transduc 26.7 2.7E+02 0.0092 24.1 8.5 49 535-584 42-94 (140)
100 3zyq_A Hepatocyte growth facto 24.9 2.9E+02 0.0099 26.2 9.1 77 534-614 44-123 (226)
101 1te4_A Conserved protein MTH18 24.0 1.3E+02 0.0044 25.4 6.0 47 16-65 83-129 (131)
102 3opb_A SWI5-dependent HO expre 22.3 3.4E+02 0.012 31.1 10.4 141 491-643 607-764 (778)
No 1
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=9.5e-84 Score=778.82 Aligned_cols=771 Identities=14% Similarity=0.214 Sum_probs=621.8
Q ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCC-chHHHHHHHHHHHHHhhcCCCCCChh---
Q 003289 4 QNTVKEALNALYHH-PDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATS-NLETLIFCSQTLRSKVQRDVEELPSE--- 78 (833)
Q Consensus 4 ~~~v~~al~~ly~~-~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~-~~~vrffaa~~L~~ki~~~w~~l~~~--- 78 (833)
.++|.+||+..|++ +|++.|++|++||++||++|++|++|..+|.+++. ++++||||+++|+++|+ .++++
T Consensus 5 ~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~l~~e~~~ 80 (980)
T 3ibv_A 5 AQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----EWNNESNL 80 (980)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----HCCTTTSH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH----hCChhhhH
Confidence 68999999765554 69999999999999999999999999999986433 78999999999999999 79999
Q ss_pred -hHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-C-CcHHHHHHHHhhchh
Q 003289 79 -AVRGLQDSLNTLLKKFH--KGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-P-EFVPGFLELLTVLPE 153 (833)
Q Consensus 79 -~~~~lr~~Ll~~l~~~~--~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~~-~-~~~~~~L~iL~~l~E 153 (833)
++..||+.|++++.+.. .+|++||+|+|.+++.++++.+|..||+ +++++++.++++ + .....+|++|..|+|
T Consensus 81 ~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~--~i~~l~~~~~~~~~~~~~~~~LriL~~i~E 158 (980)
T 3ibv_A 81 LELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWND--FFASLQGVIAASSQSEFSNFYLKVLLSIGD 158 (980)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTT--HHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCch--HHHHHHHHhcCCChhHHHHHHHHHHHHhHH
Confidence 99999999999999854 4688999999999999999999999999 999999988753 3 235667888888889
Q ss_pred hcccccccCCh---hHHHHHHHHHHHH-----HHHHHHHHHhhhh--hhHHHHHHHHHHHHHhhccCCCCccccccchhH
Q 003289 154 EVFNYKIAARP---ERRRQFEKELTSQ-----MEVALSTLTACLH--INELKEQVLEAFASWLRLKHRIPGSVLASHPLV 223 (833)
Q Consensus 154 e~~~~~~~~~~---~~r~~l~~~l~~~-----~~~vl~~l~~~l~--~~~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll 223 (833)
|+.+.++..+. .|+.++++.|.++ .+.+++++.++.+ ++++...+|+|+.+|+.| +|.+.+.+.+++
T Consensus 159 Ev~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~w---i~~~~i~~~~ll 235 (980)
T 3ibv_A 159 EIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSW---ININLIVNEPCM 235 (980)
T ss_dssp HHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT---SCHHHHHCHHHH
T ss_pred HHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhh---cCHHhhhcchHH
Confidence 99876543332 4666788888776 5556666666553 346889999999999998 677778889999
Q ss_pred HHHHhccCCcchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhh---hccCCHHHHHHHHHHHHHHh
Q 003289 224 LTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLT---DSSKDEEDVKAIARLFADMG 300 (833)
Q Consensus 224 ~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~---~~~~d~~~~~~l~~l~~~~~ 300 (833)
+.+|+.|++++++++|++||.+|+++++.+ +++.++++.+ ++.+.+. .+++|.|+.+++|++++++|
T Consensus 236 ~~l~~~L~~~~~r~~A~ecL~ei~~k~~~~-----~~k~~li~~l-----~L~~~~~~l~~~~~D~d~~~~la~L~~~~g 305 (980)
T 3ibv_A 236 NLLYSFLQIEELRCAACETMTEIVNKKMKP-----LEKLNLLNIL-----NLNLFFSKSQEQSTDPNFDEHVAKLINAQG 305 (980)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHHHHSCCCH-----HHHHHHHHHH-----HHHHHHCC-----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHcCCCh-----hhHHHHHHHH-----hHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988742 3556666543 2333332 22578899999999999999
Q ss_pred hHHHHHHHcCC------------chhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHhhcccccccCcccchHHHHHH
Q 003289 301 DSYVELIATGS------------DESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSR 368 (833)
Q Consensus 301 ~~~~~~l~~~~------------~~~~~~l~~ll~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (833)
+.+... .+.+ +.+..+++++|.+++|++++|+..+++||..+.+...+.+. +..
T Consensus 306 e~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~-------------~~~ 371 (980)
T 3ibv_A 306 VELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESS-------------SKE 371 (980)
T ss_dssp HHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTT-------------SCC
T ss_pred HHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccc-------------ccc
Confidence 999888 6655 34668899999999999999999999999999876643110 001
Q ss_pred HHHHhHHHHHHHHHHHHhhccCCCCCCCCCh----hhhHHhHhhhhcccccCCccchhhhhhhchhHHHHHHHhhcChhH
Q 003289 369 RLQVFRSAYESLVSLVSFRVQYPQDYQDLSL----EDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDA 444 (833)
Q Consensus 369 ~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~~----d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~ 444 (833)
..+.++|++.+|+.+++.||+||++.+ |++ ||.++|.+||++ ++ .+.+++.++|++.
T Consensus 372 ~~~~~~~~l~~Ll~~li~k~~yp~d~~-~~~~~d~ed~~~F~e~Rk~-----------------l~-~l~d~~~~l~~~~ 432 (980)
T 3ibv_A 372 LSASLKEFLKSLLEAIIKKMKYDESQE-WDDDPDSEEEAEFQEMRKK-----------------LK-IFQDTINSIDSSL 432 (980)
T ss_dssp CCHHHHHHHHHHHHHHHHTTSCCTTCC-CCCCSSSSTHHHHHHHHHH-----------------HH-HHHHHHHHHCHHH
T ss_pred ccHHHHHHHHHHHHHHHHHccCCCccc-cccccchhHHHHHHHHHHH-----------------HH-HHHHHHHhcChHH
Confidence 235788999999999999999998753 543 667899999999 88 8899999999999
Q ss_pred HHHHHHHHHHHhHhhcC--CCCCCcchhhHHHHHHHHhhcccCcc------ccccHHHHHhhccC-----C--CChHHHH
Q 003289 445 TLKILYIKFVEGVACCG--NKHNEWRPAEAALFCIRAISTYVSVV------EAEVMPQVMALLPK-----L--PQQPQLL 509 (833)
Q Consensus 445 ~l~~l~~~l~~~~~~~~--~~~~~w~~~Eaal~~l~~i~e~~~~~------~~~~l~~l~~~l~~-----l--~~~~~v~ 509 (833)
+++++++.+...+.+.. ..+.+|+++||+||+++++||++... .++.++++++.+.. + +.||.||
T Consensus 433 ~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~ 512 (980)
T 3ibv_A 433 FSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQ 512 (980)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 99955555554433211 11457999999999999999999852 23456666665432 2 3599999
Q ss_pred HHHHHHHHhchHHHhhCCCChhhHHHHHHHHHh--ccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcC
Q 003289 510 QTVCLTIGAYSKWFDAASSDPSILASVLSILTS--GMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNG 586 (833)
Q Consensus 510 ~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~--~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~ 586 (833)
.++|+++|||++|+..||+ ++++++++++. |+++++ +|+.+||++|.+||++|+++|.||++.|++.+.+++..
T Consensus 513 ~~~~~~l~rys~~~~~~~~---~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~ 589 (980)
T 3ibv_A 513 LLYMEILVRYASFFDYESA---AIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNI 589 (980)
T ss_dssp HHHHHHHHHTGGGGGTCCT---THHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCC
T ss_pred HHHHHHHHHHHHHHhcCch---hHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcC
Confidence 9999999999999999997 99999999999 998764 59999999999999999999999999999999998874
Q ss_pred cCCCCC----------------CHhhHHHHHHHHHHHHhcC--ChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccc-cCc
Q 003289 587 EGSLKV----------------SAEDSLHLVEALSMVITEL--PQVDAKKALEMLCLPVVTPLQEIINQGPEILQK-KHP 647 (833)
Q Consensus 587 ~~~~~l----------------~~~~~~~l~eai~~vi~~~--~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~-~~~ 647 (833)
.....- ..+++.++|||+|.+++.. |.++...+++.++.|++++++++++...++.++ ...
T Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i 669 (980)
T 3ibv_A 590 SVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISV 669 (980)
T ss_dssp CCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHH
T ss_pred cCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHH
Confidence 210000 2457999999999999875 567788999999999999999999865432111 122
Q ss_pred hhhhHHHHHHHHhhhccC-CcccHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 003289 648 RDLTVHIDRFAYIFRYVN-HPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQG 726 (833)
Q Consensus 648 ~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 726 (833)
.+...+++.+++.|+..+ .++|+..+++++|+++..+++.|+.+..|+|++|.++++++.++|+.+.|++|.+++.++.
T Consensus 670 ~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~ 749 (980)
T 3ibv_A 670 YCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLN 749 (980)
T ss_dssp HHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHh
Confidence 344456666666666543 2467889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCccHhhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhhcccc----cCCcCCchHHHHHHHHHHHHhh-CCC
Q 003289 727 LYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIE----EFTSRPDVADDCFLLASRCIRY-CPQ 801 (833)
Q Consensus 727 ~~~~~~~~~~L~~~~~li~~fg~~~~~~~~~~~~~~~l~~~~~~~l~~~~----~~~~~pd~~~~~f~l~~~~~~~-~p~ 801 (833)
.|+.+++++||++++++|++||++ +.+.+.+++.+++++++++|++.. ..++.+|+.++||.|+..++++ .+.
T Consensus 750 ~~~~~e~~~fL~l~~qli~~f~~~--~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~ 827 (980)
T 3ibv_A 750 SIDMNELVDVLSFISQLIHIYKDN--MMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGS 827 (980)
T ss_dssp HCCTTTHHHHHHHHHHHHHHTTTT--SHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTG
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence 999999999999999999999998 999999999999999999998621 1245677999999999999985 467
Q ss_pred ccCCc---CCcHHHHHHHHH-cccccCchhhhhh
Q 003289 802 LFIPS---SVFPSLVDCSMI-GITVQHRRRILIC 831 (833)
Q Consensus 802 ~~~~~---~~l~~~~~~~~~-~l~~~~~~~~~~~ 831 (833)
.+++. +.++.++...+. |...++-.+.++|
T Consensus 828 v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a 861 (980)
T 3ibv_A 828 ILFTEENQVYFDPLINSILHFANLVGEPATQKSS 861 (980)
T ss_dssp GGGSHHHHTTHHHHHHHHHHHC-----CHHHHHH
T ss_pred hhcCCcchHHHHHHHHHHHHHhccCCChHHHHHH
Confidence 77763 457766666653 3445566655554
No 2
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=3.9e-80 Score=746.76 Aligned_cols=763 Identities=14% Similarity=0.210 Sum_probs=624.9
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHH
Q 003289 3 LQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG 82 (833)
Q Consensus 3 ~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~~ 82 (833)
.++.+++||.++|+++++ .|++|++||+++|++|++|..|..+|.. +.++++|||||++|+++|+++|..+|++++..
T Consensus 14 dv~~Le~av~~ly~p~~~-~r~~A~~~L~~~q~sp~aw~~~~~iL~~-s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~ 91 (1023)
T 4hat_C 14 DIALLDQVVSTFYQGSGV-QQKQAQEILTKFQDNPDAWQKADQILQF-STNPQSKFIALSILDKLITRKWKLLPNDHRIG 91 (1023)
T ss_dssp CHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHCTTGGGGHHHHHHH-CCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHH
T ss_pred CHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHcCccHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHH
Confidence 367999999999987655 8999999999999999999999999976 56889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCcHHHHHHHHhhchhhcc
Q 003289 83 LQDSLNTLLKKFHKG------PPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVF 156 (833)
Q Consensus 83 lr~~Ll~~l~~~~~~------~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~~~~~~~~~L~iL~~l~Ee~~ 156 (833)
+|+.|++++.++..+ ++++++|+|.+++.++++.+|+.||+ +++++++.+++++..+.++|.+|+.|+||+.
T Consensus 92 Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~--~l~dL~~~l~~~~~~~~~~L~iL~~L~EEV~ 169 (1023)
T 4hat_C 92 IRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPE--FIPELIGSSSSSVNVCENNMIVLKLLSEEVF 169 (1023)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTT--HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchH--HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999886533 57899999999999999999999999 9999999998776678999999999999997
Q ss_pred cc-cccCChhHHHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHhhccCCCCccccccchhHHHHH-hccC
Q 003289 157 NY-KIAARPERRRQFEKELTSQMEVALSTLTACLHI---NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTAL-SSLH 231 (833)
Q Consensus 157 ~~-~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~---~~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~~-~~L~ 231 (833)
+. +..++..||..+++.|...++.|++++..+++. +++...+++|+.+|+.| +|.+.+.++++++.++ ..|+
T Consensus 170 ~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~W---I~i~~i~~~~ll~~l~~~~L~ 246 (1023)
T 4hat_C 170 DFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT 246 (1023)
T ss_dssp TSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh---CCHHHhcchhHHHHHHHHHcC
Confidence 63 334567889999999999999999999999875 36888999999999998 7777788899999999 9999
Q ss_pred CcchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHH------------HhhHHHhhhcc-CCHHHHHHHHHHHHH
Q 003289 232 SEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQI------------MSLKAHLTDSS-KDEEDVKAIARLFAD 298 (833)
Q Consensus 232 ~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~~------------~~l~~~l~~~~-~d~~~~~~l~~l~~~ 298 (833)
+++++++|++||.+++++.... +..+..+.+..+++.+ ..+.+.+..++ +|+++++++|+++++
T Consensus 247 ~~~~r~~A~ecL~eIv~~~~~~---~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~ 323 (1023)
T 4hat_C 247 SPDTRAITLKCLTEVSNLKIPQ---DNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTT 323 (1023)
T ss_dssp SHHHHHHHHHHHHHHHTSCCCS---SCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccccCC---chHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHH
Confidence 9999999999999999854311 0001112333333332 23445555443 467889999999999
Q ss_pred HhhHHHHHHHcCCchhHH----HHHHHHhhhcCCCcchhhhhHHHHHHHHHHHhhcccccccCcccchHHHHHHHHHHhH
Q 003289 299 MGDSYVELIATGSDESML----IVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFR 374 (833)
Q Consensus 299 ~~~~~~~~l~~~~~~~~~----~l~~ll~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (833)
+|+++..++.+++ ++.. .+++|+.++.+++.++...+++||+.+.+.++.. +.+...|+
T Consensus 324 ~~e~~~~li~~~~-~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e----------------~~~~~~~~ 386 (1023)
T 4hat_C 324 YLARNRALLESDE-SLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE----------------PLKKHIYE 386 (1023)
T ss_dssp HHHHHGGGGTSCG-GGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTS----------------TTTGGGGH
T ss_pred HHHHHHHHHhCCc-chhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhc----------------hHHHHHHH
Confidence 9999999886553 3333 4568999999999999999999999999987641 12346899
Q ss_pred HHHHHHHHHHHhhccCCCC-------CCCC------ChhhhHHhHhhhhcccccCCccchhhhhhhchhHHHHHHHhhcC
Q 003289 375 SAYESLVSLVSFRVQYPQD-------YQDL------SLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLG 441 (833)
Q Consensus 375 ~~~~~ll~~l~~k~~~p~d-------~~~~------~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~ 441 (833)
|+|.+|+.++++||+||++ ..+| |.|+.+.|+.+| |++.+++.+.+
T Consensus 387 ~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~R---------------------d~L~~l~~l~~ 445 (1023)
T 4hat_C 387 EICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSER---------------------EVLVYLTHLNV 445 (1023)
T ss_dssp HHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHH---------------------HHHHHHHHHCH
T ss_pred HHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHH---------------------HHHHHHhccCH
Confidence 9999999999999999982 3345 556667777666 46677788887
Q ss_pred hhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcc-ccccHHHHHhhccCCCC-------hHHHHHHHH
Q 003289 442 GDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPKLPQ-------QPQLLQTVC 513 (833)
Q Consensus 442 ~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~-~~~~l~~l~~~l~~l~~-------~~~v~~t~~ 513 (833)
+.+++++.+.+.+.+.. +..+|+.+||++||+++|++++.++ .+++++++++.|.+++. +++++.+++
T Consensus 446 -~~~~~~~~~~l~~~l~~---~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~ 521 (1023)
T 4hat_C 446 -IDTEEIMISKLARQIDG---SEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIM 521 (1023)
T ss_dssp -HHHHHHHHHHHHHHHSS---TTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHH
Confidence 56999999988776532 1478999999999999999999875 56788888887765542 467889999
Q ss_pred HHHHhchHHHhhCCCChhhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhh--------cCHHHHHHHHHHHh
Q 003289 514 LTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLC--------GYLDGLYNVYRTAV 584 (833)
Q Consensus 514 ~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~-~~v~~~A~~al~~l~~~~~~~l~--------~~l~~ll~~l~~~l 584 (833)
+++|+|++|+..||+ ++++++++++.+++++ ++|+.+||.||.+||++|+.++. ||++.+++.+.++.
T Consensus 522 ~~lGry~~wl~~~~~---~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~ 598 (1023)
T 4hat_C 522 YVVGQYPRFLKAHWN---FLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTT 598 (1023)
T ss_dssp HHHHTCHHHHHHCHH---HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHhccHH---HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHH
Confidence 999999999999997 9999999999999754 34999999999999999999884 79999999998887
Q ss_pred cCcCCCCCCHhhHHHHHHHHHHHHhcCChHH-HHHHHHHhhhhhHHHHHHHHhcCCCccc----ccCchhhhHHHHHHHH
Q 003289 585 NGEGSLKVSAEDSLHLVEALSMVITELPQVD-AKKALEMLCLPVVTPLQEIINQGPEILQ----KKHPRDLTVHIDRFAY 659 (833)
Q Consensus 585 ~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~-~~~~l~~l~~p~~~~l~~~~~~~~~~~~----~~~~~~~~~~l~~l~~ 659 (833)
. .++.+++..+|||+|.+++++|++. ...+++.++.|+.+.|+++.++...+++ ....+.+...+++++.
T Consensus 599 ~-----~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~ 673 (1023)
T 4hat_C 599 A-----DLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVA 673 (1023)
T ss_dssp T-----TSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHH
T ss_pred H-----hCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHH
Confidence 5 4788999999999999999999876 5689999999999999999865322111 0112344556777777
Q ss_pred hhhccCCcccHHHHHHHHHHHHHHHHHhhcCCh--HH-----------HHHHHHHHHH-HHHHhhh----------hhhh
Q 003289 660 IFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDM--RT-----------MESLCRACKY-AVRTSKR----------FMGI 715 (833)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~--~v-----------~e~~~~~~~~-~~~~~~~----------~~~~ 715 (833)
+.++.+ +++.+.++.+|+.+..+.+.+.... .| ..+.++.+|+ +++-+.. ....
T Consensus 674 v~~~lg--~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~ 751 (1023)
T 4hat_C 674 VCTSMG--ADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKV 751 (1023)
T ss_dssp HHHHHG--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHH
T ss_pred HHHHhc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 777664 6788888888888877776653211 00 1235666654 2331111 1356
Q ss_pred hHHHHHHHHHHHHhhc----CCccHhhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHH
Q 003289 716 TIGAILEEIQGLYQQH----QQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLL 791 (833)
Q Consensus 716 ~l~~l~~~l~~~~~~~----~~~~~L~~~~~li~~fg~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l 791 (833)
++|++++.++.+|.++ +.+++|++.+.+|+++|.. +.+.+..+++.++++|+.+++ +++.++||.+.+||+|
T Consensus 752 ~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~--~~~~~~~il~~vf~~Tl~mi~--~~~~~~Pe~r~~ff~l 827 (1023)
T 4hat_C 752 LVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHM--IPQGVILILQSVFECTLDMIN--KDFTEYPEHRVEFYKL 827 (1023)
T ss_dssp THHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGG--CHHHHHHHHHHHHHHHHHHHS--SCSSSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHHHHHh--cccccChHHHHHHHHH
Confidence 8899999999999986 4589999999999999975 899999999999999999999 5799999999999999
Q ss_pred HHHHHhhCCCccCCcC--CcHHHHHHHHHcccccCchhhhhh
Q 003289 792 ASRCIRYCPQLFIPSS--VFPSLVDCSMIGITVQHRRRILIC 831 (833)
Q Consensus 792 ~~~~~~~~p~~~~~~~--~l~~~~~~~~~~l~~~~~~~~~~~ 831 (833)
+.++..+||..++..| .+..+++|+++|++.+||++.-++
T Consensus 828 l~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~ 869 (1023)
T 4hat_C 828 LKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNG 869 (1023)
T ss_dssp HHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHH
Confidence 9999999999988754 799999999999999999998765
No 3
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=5.1e-79 Score=753.77 Aligned_cols=772 Identities=21% Similarity=0.356 Sum_probs=626.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHH
Q 003289 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL 83 (833)
Q Consensus 4 ~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~~l 83 (833)
+++|+++++++|+ +|++.|++|++||++||++|++|.+|..||.. +.++++|||||++|+++|+++|..+|++++..+
T Consensus 6 ~~~l~~~l~~~~~-~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~i 83 (971)
T 2x1g_F 6 IARLEEAVVSFYR-SNSQNQAITHEWLTDAEASPQAWQFSWQLMQL-GKSQEVQFFGAITLHSKLMKHWHEVPPENREEL 83 (971)
T ss_dssp -----CTHHHHHT-STTTC----CHHHHHTTTSTHHHHHHHHHTCT-TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHH
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHH
Confidence 6789999999875 68889999999999999999999999999976 678899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC-------CCCcHHHHHHHHhhchhhcc
Q 003289 84 QDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS-------HPEFVPGFLELLTVLPEEVF 156 (833)
Q Consensus 84 r~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~-------~~~~~~~~L~iL~~l~Ee~~ 156 (833)
|+.|++++.+...+|+.||+|+|.+++.++.+.++ .||+ +++++++.+++ ++..++..+++|+.++||+.
T Consensus 84 r~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~--~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~ 160 (971)
T 2x1g_F 84 KQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPG--AIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQ 160 (971)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C--------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccH--HHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHh
Confidence 99999999987666899999999999999999998 9999 99999988865 23467899999999999987
Q ss_pred cccccCChhHHHHHHHHHHHHHHHHHHHHHhhhhhh----------HHHHHHHHHHHHHhhccCCCCccccccchhHHHH
Q 003289 157 NYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----------ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTA 226 (833)
Q Consensus 157 ~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~----------~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~ 226 (833)
+.+ +..||..+++.+..+++.|++++.++++.. ++...+++|+.+|+.++ .+|.+ ...++++.+
T Consensus 161 ~~~---~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~-~ip~~--~~~~ll~~l 234 (971)
T 2x1g_F 161 VIH---TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNI-GYTIE--GCVTITAVL 234 (971)
T ss_dssp HCC---CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHS-CCCGG--GHHHHHHHH
T ss_pred ccC---cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhC-CcCcc--ccccHHHHH
Confidence 544 456788889999999999999998887642 57889999999999852 25555 457889988
Q ss_pred Hhcc------------------CCcchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhh--ccCC-
Q 003289 227 LSSL------------------HSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTD--SSKD- 285 (833)
Q Consensus 227 ~~~L------------------~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~--~~~d- 285 (833)
+. | .+++++++|++|+.++++.... .++.+.+..++|.++.+.+.+.. .++|
T Consensus 235 ~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~ 307 (971)
T 2x1g_F 235 LE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDC------HNYPKTAFVLIKMFLDSLSEITKTEWKREN 307 (971)
T ss_dssp HH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGG------GGCHHHHHHHHHHHHHHHHHHHHHHSSSSC
T ss_pred Hh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccc------cccHHHHHHHHHHHHHhHHHHHHHHhcccc
Confidence 87 6 4578999999999999986432 24577888888888776655432 3344
Q ss_pred --HHHHHHHHHHHHHHhhHHHHHHH----c----CCchhHHHHHHHHhhhcC----C-CcchhhhhHHHHHHHHHHHhhc
Q 003289 286 --EEDVKAIARLFADMGDSYVELIA----T----GSDESMLIVHALLEVASH----P-EYDIASMTFNFWHSLQVILTKR 350 (833)
Q Consensus 286 --~~~~~~l~~l~~~~~~~~~~~l~----~----~~~~~~~~l~~ll~~~~~----~-~~~v~~~~l~fw~~l~~~~~~~ 350 (833)
++..+.+|++++.+|+.+...+. + .++.+..+++.++.++.+ + +++++..+++||+.+.+.....
T Consensus 308 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~ 387 (971)
T 2x1g_F 308 DNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAM 387 (971)
T ss_dssp SCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhc
Confidence 37888999999999999888776 3 224577889999998877 3 7889999999999998854321
Q ss_pred ccccccCcccchHHHHHHHHHHhHHHHHHHHHHHHhhccCCCC--CCCCChhhhHHhHhhhhcccccCCccchhhhhhhc
Q 003289 351 DSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIA 428 (833)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d--~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~ 428 (833)
. . +.+.......++|++.+++..++.|+.||++ +++|+.+|.++|.+||+.
T Consensus 388 ~------~----~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~----------------- 440 (971)
T 2x1g_F 388 S------N----DEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQD----------------- 440 (971)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHH-----------------
T ss_pred c------c----ccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHH-----------------
Confidence 0 0 0011234568899999999999999999975 456788888899999999
Q ss_pred hhHHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhccCCC-C--h
Q 003289 429 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLP-Q--Q 505 (833)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~~l~-~--~ 505 (833)
++|++.+++.++| +.+++.+.+.+.+.+......+.+|+.+||++|+++++++++.....+.++++++.+++++ . |
T Consensus 441 ~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~ 519 (971)
T 2x1g_F 441 ISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLN 519 (971)
T ss_dssp HHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSC
T ss_pred HHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccC
Confidence 9999999999998 6788888888877653210113789999999999999999998777788899998776665 2 8
Q ss_pred HHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhc
Q 003289 506 PQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 585 (833)
Q Consensus 506 ~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~ 585 (833)
|.||.++++++|+|++|+..||+ ++++++++++.+++ +. |+.+||+||.+||++|+..|.||+++|++.+.++++
T Consensus 520 ~~vr~~a~~~l~~~~~~l~~~~~---~l~~vl~~l~~~l~-~~-v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~ 594 (971)
T 2x1g_F 520 VKLLGTALETMGSYCNWLMENPA---YIPPAINLLVRGLN-SS-MSAQATLGLKELCRDCQLQLKPYADPLLNACHASLN 594 (971)
T ss_dssp HHHHHHHHHHHHHTHHHHC-------CHHHHHHHHHHHHH-SS-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHhC-hH-HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHc
Confidence 99999999999999999999986 89999999999994 66 999999999999999999999999999999999988
Q ss_pred CcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccC
Q 003289 586 GEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN 665 (833)
Q Consensus 586 ~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 665 (833)
.+ .++.+++..+++++|.++.++|.++..+++..++.|+++.++++.++...+.+ ........+++++.+++.++
T Consensus 595 ~~---~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~--~~~~~~~~l~~L~~~~~~l~ 669 (971)
T 2x1g_F 595 TG---RMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPA--ARIRTIFRLNMISTLFSSLN 669 (971)
T ss_dssp ST---TSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHH--HHHHHHHHHHHHHHHHHHHT
T ss_pred CC---CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChh--hHHHHHHHHHHHHHHHhhcC
Confidence 54 46789999999999999999987788899999999999999998775431111 12345668889999888764
Q ss_pred C-----------cccHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCCc
Q 003289 666 H-----------PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQP 734 (833)
Q Consensus 666 ~-----------~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 734 (833)
. ++++.++.+++||++..+++.+..++++.|++|.+++++++++|..+.|++|.+++.+...|+.++++
T Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~~ 749 (971)
T 2x1g_F 670 TDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCCA 749 (971)
T ss_dssp C-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CCH
T ss_pred CCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCch
Confidence 3 46788999999999999999988889999999999999999999999999999999999999999999
Q ss_pred cHhhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhhccc--ccCCcCCchHHHHHHHHHHHHhhCCCccCCcCC-cHH
Q 003289 735 CFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSI--EEFTSRPDVADDCFLLASRCIRYCPQLFIPSSV-FPS 811 (833)
Q Consensus 735 ~~L~~~~~li~~fg~~~~~~~~~~~~~~~l~~~~~~~l~~~--~~~~~~pd~~~~~f~l~~~~~~~~p~~~~~~~~-l~~ 811 (833)
++|++++.++..||.++.+.+.+.+++..++.+++..|.+. +..+++||++++||+|+.++++++|..+++++. +..
T Consensus 750 ~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~ 829 (971)
T 2x1g_F 750 PTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDR 829 (971)
T ss_dssp HHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHH
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHH
Confidence 99999999999999988899999999999999999988753 246789999999999999999999999999998 999
Q ss_pred HHHHHHHcccccCchhhhhh
Q 003289 812 LVDCSMIGITVQHRRRILIC 831 (833)
Q Consensus 812 ~~~~~~~~l~~~~~~~~~~~ 831 (833)
++++++.+++.+|+++.+++
T Consensus 830 i~~~~~~~l~~~~~~~~~s~ 849 (971)
T 2x1g_F 830 LVFYAQRGMTLPESGAIRNS 849 (971)
T ss_dssp HHHHHHHHHTSSCSSHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHH
Confidence 99999999999999999876
No 4
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=2.8e-78 Score=724.54 Aligned_cols=788 Identities=15% Similarity=0.241 Sum_probs=617.4
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHH
Q 003289 3 LQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG 82 (833)
Q Consensus 3 ~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~~ 82 (833)
.++.++++|.++|++ +++.|++|++||++||++|++|..|..+|.. +.++++||||+++|+++|+++|..+|++++..
T Consensus 26 Dv~~Le~lv~~ly~p-~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~-s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~ 103 (1073)
T 3gjx_A 26 DINLLDNVVNCLYHG-EGAQQRMAQEVLTHLKEHPDAWTRVDTILEF-SQNMNTKYYGLQILENVIKTRWKILPRNQCEG 103 (1073)
T ss_dssp SHHHHHHHHHTTTCS-SHHHHHHHHHHHHTSSCCSCHHHHHTCC----CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHH
T ss_pred CHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCchHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHH
Confidence 367899999999976 6889999999999999999999999999976 67889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCcHHHHHHHHhhchhhcc
Q 003289 83 LQDSLNTLLKKFHKG------PPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVF 156 (833)
Q Consensus 83 lr~~Ll~~l~~~~~~------~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~~~~~~~~~L~iL~~l~Ee~~ 156 (833)
||+.|++++.++..+ ++.+++|+|.+++.++++.+|+.||+ +++++++.+++++..+.++|++|+.|+||+.
T Consensus 104 LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~--fi~dLv~~~~~~~~~~~~~L~IL~~L~EEV~ 181 (1073)
T 3gjx_A 104 IKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPT--FISDIVGASRTSESLCQNNMVILKLLSEEVF 181 (1073)
T ss_dssp HHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTT--HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccH--HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999986443 36788999999999999999999999 9999999887666678899999999999988
Q ss_pred cc-cccCChhHHHHHHHHHHHHHHHHHHHHHhhhhhh---HHHHHHHHHHHHHhhccCCCCccccccchhHHHH-HhccC
Q 003289 157 NY-KIAARPERRRQFEKELTSQMEVALSTLTACLHIN---ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTA-LSSLH 231 (833)
Q Consensus 157 ~~-~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~---~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~-~~~L~ 231 (833)
+. +..++..||.++++.|...++.|++++..+++.+ ++...+++|+.+|+.| ++.+.+.++++++.+ +..|+
T Consensus 182 d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sW---I~i~~i~~~~ll~~L~~~~L~ 258 (1073)
T 3gjx_A 182 DFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNW---IPLGYIFETKLISTLIYKFLN 258 (1073)
T ss_dssp TSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHHHTSS
T ss_pred hcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHh---cCHHHhccchHHHHHHHHhcC
Confidence 65 3345678899999999999999999999988653 5667777777777776 555677788999988 79999
Q ss_pred CcchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHh-----------hHHHhhhc-cCCHHHHHHHHHHHHHH
Q 003289 232 SEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMS-----------LKAHLTDS-SKDEEDVKAIARLFADM 299 (833)
Q Consensus 232 ~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~~~~-----------l~~~l~~~-~~d~~~~~~l~~l~~~~ 299 (833)
+++++++|++||.+|+++... +..+.+..++..++. +.+.+..+ ++|.++++++|++|+++
T Consensus 259 ~~~~r~aA~dcL~eIv~k~~~-------~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~ 331 (1073)
T 3gjx_A 259 VPMFRNVSLKCLTEIAGVSVS-------QYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTF 331 (1073)
T ss_dssp SHHHHHHHHHHHHHHHHSCSG-------GGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcccc-------chHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 999999999999999987421 222334444544332 33333333 34568999999999999
Q ss_pred hhHHHHHHHcCCc---hhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHhhcccccccCccc----chHHHHHHHHHH
Q 003289 300 GDSYVELIATGSD---ESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEA----SAEAERSRRLQV 372 (833)
Q Consensus 300 ~~~~~~~l~~~~~---~~~~~l~~ll~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 372 (833)
|++|...+.++|+ .....+++++.++.+++.++...+|+||+.+.+.+++...+. .+..| +...+.+.+...
T Consensus 332 ~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~-~~~~~~~~~~~~~~~~~~~~~ 410 (1073)
T 3gjx_A 332 LKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFS-TSASPLLSGSQHFDIPPRRQL 410 (1073)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSC-CCCSSCTTSSCCSCSCHHHHT
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcccc-ccccccccccccccchhHHHH
Confidence 9999999987754 244567889999999999999999999999999988542210 00000 000001234568
Q ss_pred hHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhhcccccCCccchhhhhhhchhHHHHHHHhhcChhHHHHHHHHH
Q 003289 373 FRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIK 452 (833)
Q Consensus 373 ~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~ 452 (833)
|+|+|++|..+++.||.||+|.-..++|+.+.|++||+| ..+.. ..+.+.|++..+.. ++++.++..+.+.
T Consensus 411 y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d----~~~~~----ly~~mrd~L~~lt~-l~~~~~~~i~~~~ 481 (1073)
T 3gjx_A 411 YLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKD----TDSIN----LYKNMRETLVYLTH-LDYVDTEIIMTKK 481 (1073)
T ss_dssp THHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSS----CHHHH----HHHHHHHHHHHHHH-HCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhh----cchHH----HHHHHHHHHHHHhc-CCHHHHHHHHHHH
Confidence 999999999999999999986422222333445666666 11100 00114455554443 4457788888888
Q ss_pred HHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcc-ccccHHHHHhhccCCCC-------hHHHHHHHHHHHHhchHHHh
Q 003289 453 FVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPKLPQ-------QPQLLQTVCLTIGAYSKWFD 524 (833)
Q Consensus 453 l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~-~~~~l~~l~~~l~~l~~-------~~~v~~t~~~~ig~y~~~l~ 524 (833)
+.+.+.. +.++|+.+||+||++++||.++.++ ++++++++++.|.++|. .+.++.++|+++|+|++|+.
T Consensus 482 l~~~~~~---~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~ 558 (1073)
T 3gjx_A 482 LQNQVNG---TEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLR 558 (1073)
T ss_dssp HHHHHTS---CCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHhcC---CCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHH
Confidence 8765432 2578999999999999999888754 56899999999876653 24688889999999999999
Q ss_pred hCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhh--------cCHHHHHHHHHHHhcCcCCCCCCHh
Q 003289 525 AASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLC--------GYLDGLYNVYRTAVNGEGSLKVSAE 595 (833)
Q Consensus 525 ~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~--------~~l~~ll~~l~~~l~~~~~~~l~~~ 595 (833)
.||+ ++++++++++.+++++. .|+.+||.||.+||++|++++. ||++++++.+..+.. .++++
T Consensus 559 ~h~~---~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~-----~l~~~ 630 (1073)
T 3gjx_A 559 AHWK---FLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIIC-----DLQPQ 630 (1073)
T ss_dssp HCHH---HHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHT-----TCCHH
T ss_pred hCHH---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHH-----hcCHH
Confidence 9997 99999999999998642 4999999999999999999873 689999998888765 58899
Q ss_pred hHHHHHHHHHHHHhcCChHH-HHHHHHHhhhhhHHHHHHHHhcCCCccccc----CchhhhHHHHHHHHhhhccCCcccH
Q 003289 596 DSLHLVEALSMVITELPQVD-AKKALEMLCLPVVTPLQEIINQGPEILQKK----HPRDLTVHIDRFAYIFRYVNHPEAV 670 (833)
Q Consensus 596 ~~~~l~eai~~vi~~~~~~~-~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~~~~~~~~~~ 670 (833)
+...+|+|+|.++++.|++. ...+++.++.|..+.|.+++++...+.+.. ..+.+...+++.+.+..+.+ +++
T Consensus 631 ~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g--~~f 708 (1073)
T 3gjx_A 631 QVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVG--HPF 708 (1073)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHC--GGG
T ss_pred HHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcc--hhH
Confidence 99999999999999999886 579999999999999999987543222110 01233334444444444443 678
Q ss_pred HHHHHHHHHHHHHHHHhhcCC-------------hHHHHHHHHHHHHHH-HHhhhh----------hhhhHHHHHHHHHH
Q 003289 671 ADAIQRLWPIFKAIFDIRAWD-------------MRTMESLCRACKYAV-RTSKRF----------MGITIGAILEEIQG 726 (833)
Q Consensus 671 ~~~~~~~~~~l~~il~~~~~~-------------~~v~e~~~~~~~~~~-~~~~~~----------~~~~l~~l~~~l~~ 726 (833)
.+.+..+|+-+..+...+.+. .....+.|+.+|+.+ +-+..+ ...++|++++.++.
T Consensus 709 ~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~ 788 (1073)
T 3gjx_A 709 VIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLI 788 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHH
Confidence 888888888666655443221 112346678888533 322211 45788999999999
Q ss_pred HHhh----cCCccHhhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCc
Q 003289 727 LYQQ----HQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQL 802 (833)
Q Consensus 727 ~~~~----~~~~~~L~~~~~li~~fg~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~~~~~p~~ 802 (833)
+|.+ .+.+++|++.+.+|.++|.. +.+.+..+++.++++|+.+++ .++.++||.+.+||+|+.++..+||..
T Consensus 789 dY~~~~p~~r~~evL~l~s~iv~k~~~~--~~~~~~~il~~vf~~Tl~mi~--~~f~~~Pe~r~~ff~ll~~~~~~~f~~ 864 (1073)
T 3gjx_A 789 DYQRNVPAAREPEVLSTMAIIVNKLGGH--ITAEIPQIFDAVFECTLNMIN--KDFEEYPEHRTNFFLLLQAVNSHCFPA 864 (1073)
T ss_dssp HHHHSCGGGCCTHHHHHHHHHHHHHGGG--TGGGHHHHHHHHHHHHHHHHS--SCSSSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHhcCCcccccHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHHh--CCcccCcHHHHHHHHHHHHHHHHHhHH
Confidence 9998 47899999999999999986 888999999999999999998 579999999999999999999999999
Q ss_pred cCC--cCCcHHHHHHHHHcccccCchhhhhh
Q 003289 803 FIP--SSVFPSLVDCSMIGITVQHRRRILIC 831 (833)
Q Consensus 803 ~~~--~~~l~~~~~~~~~~l~~~~~~~~~~~ 831 (833)
+++ ++.+..+++++++|++.+||++.-++
T Consensus 865 l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~ 895 (1073)
T 3gjx_A 865 FLAIPPAQFKLVLDSIIWAFKHTMRNVADTG 895 (1073)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHcCCCChhHHHHH
Confidence 887 44689999999999999999987654
No 5
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=4e-76 Score=728.53 Aligned_cols=772 Identities=22% Similarity=0.391 Sum_probs=654.8
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHH
Q 003289 3 LQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG 82 (833)
Q Consensus 3 ~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~~ 82 (833)
.+++|+++++++|.++|++.|++|+++|++||++|++|.+|..||.. +.++++|||||++|+++|+++|..++++++..
T Consensus 22 ~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ 100 (963)
T 2x19_B 22 TVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQP-DKVPEIQYFGASALHIKISRYWSDIPTDQYES 100 (963)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTST-TSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHH
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHhCHHhCCHHHHHH
Confidence 47889999999998889999999999999999999999999999985 67889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC------CCCcHHHHHHHHhhchhhcc
Q 003289 83 LQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS------HPEFVPGFLELLTVLPEEVF 156 (833)
Q Consensus 83 lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~------~~~~~~~~L~iL~~l~Ee~~ 156 (833)
+|+.|++++..+..+|+.||+|+|.+++.++.+.+|+.||+ +++++++.+++ ++..+..++.+|+.++||+.
T Consensus 101 ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~--~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~ 178 (963)
T 2x19_B 101 LKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPC--AVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQ 178 (963)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTT--HHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccch--HHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHh
Confidence 99999999998765689999999999999999999899999 99999998875 33367899999999999998
Q ss_pred cccccCChhHHHHHHHHHHHHHHHHHHHHHhhhhhh----HHHHHHHHHHHHHhhccCCCCccccccchhHHHHHhccCC
Q 003289 157 NYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHS 232 (833)
Q Consensus 157 ~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~----~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~~~~L~~ 232 (833)
+.+. +.+||..+++.+..+++.|++++.++++.. .+...+++|+.+|+..+ .+. ....++++.+++.+.+
T Consensus 179 ~~~~--~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~--~~~--~~~~~ll~~l~~~l~~ 252 (963)
T 2x19_B 179 TSRL--PQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLE--VPL--QDCEALIQAAFAALQD 252 (963)
T ss_dssp TCCC-----------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSS--CCG--GGTHHHHHHHHHHTTS
T ss_pred cccC--cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCC--CCc--ccchHHHHHHHHHhCC
Confidence 7655 567788888888889999999999888653 48889999999999853 222 2357899999999999
Q ss_pred cchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhh--hccCCHHHHHHHHHHHHHHhhHHHHHHHcC
Q 003289 233 EILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLT--DSSKDEEDVKAIARLFADMGDSYVELIATG 310 (833)
Q Consensus 233 ~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~--~~~~d~~~~~~l~~l~~~~~~~~~~~l~~~ 310 (833)
+++++.|++|+.++++..... +..+.+..+++.++.+.+.+. ...+|.+.++.+|++++++++.+...+.++
T Consensus 253 ~~~~~~a~~~l~~i~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~ 326 (963)
T 2x19_B 253 SELFDSSVEAIVNAISQPDAQ------RYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQ 326 (963)
T ss_dssp TTTHHHHHHHHHHHHTCTTGG------GCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHcccccc------cCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcC
Confidence 999999999999999754321 234566677777665543332 124567888999999999999999888743
Q ss_pred ---CchhHHHHHHHHhhhcCC-----CcchhhhhHHHHHHHHHHHhhcccccccCcccchHHHHHHHHHHhHHHHHHHHH
Q 003289 311 ---SDESMLIVHALLEVASHP-----EYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVS 382 (833)
Q Consensus 311 ---~~~~~~~l~~ll~~~~~~-----~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 382 (833)
++.+..++++++.++.+| +++++..+++||+.+.+.....+ . ..++.....++|++.+++.
T Consensus 327 ~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~------~-----~~~~~~~~~~~~~l~~l~~ 395 (963)
T 2x19_B 327 VEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFE------A-----EKQAVYQQVYRPVYFQLVD 395 (963)
T ss_dssp GGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSC------H-----HHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhh------h-----hhhHHHHHHHHHHHHHHHH
Confidence 356778999999999873 67889999999999998654210 0 0123456788999999999
Q ss_pred HHHhhccCCCC--CCCCChhhhHHhHhhhhcccccCCccchhhhhhhchhHHHHHHHhhcChhHHHHHHHHHHHHhHhhc
Q 003289 383 LVSFRVQYPQD--YQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACC 460 (833)
Q Consensus 383 ~l~~k~~~p~d--~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~ 460 (833)
+++.+|.||+| +++|++||.++|++||++ ++|++.+++.+.| +.+++.+.+.+.+.+.+.
T Consensus 396 ~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~-----------------~~~~L~~~~~~~~-~~~l~~~~~~l~~~l~~~ 457 (963)
T 2x19_B 396 VLLHKAQFPSDEEYGFWSSDEKEQFRIYRVD-----------------ISDTLMYVYEMLG-AELLSNLYDKLGRLLTSS 457 (963)
T ss_dssp HHHHHHSCCCHHHHHTSCHHHHHHHHHHHHH-----------------HHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCcccccCCChhHHHHHHHHHHH-----------------HHHHHHHHHHHcc-HHHHHHHHHHHHHHHHhc
Confidence 99999999986 346788877889999999 9999999999998 568888888887765332
Q ss_pred CCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhccCCC-ChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHH
Q 003289 461 GNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSI 539 (833)
Q Consensus 461 ~~~~~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~~l~-~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~ 539 (833)
. .+.+|+.+||++|+++++++++..+..+.++++++.+++++ +||.||.++++++|+|++|+..||+ +++++++.
T Consensus 458 ~-~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~---~l~~vl~~ 533 (963)
T 2x19_B 458 E-EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV---MINSVLPL 533 (963)
T ss_dssp C-CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH---HHTTTHHH
T ss_pred C-CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH---HHHHHHHH
Confidence 1 25689999999999999999998777788999999887776 5899999999999999999999885 99999999
Q ss_pred HHhccCCCHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHH
Q 003289 540 LTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKA 619 (833)
Q Consensus 540 l~~~l~~~~~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~ 619 (833)
++.+++++. |+.+||+||.+||++|++.+.||++.+++.+.+++..+ .++.+++..+++|+|.++.+.|.++..++
T Consensus 534 l~~~l~~~~-V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~---~~~~~~~~~~~eai~~i~~~~~~~~~~~~ 609 (963)
T 2x19_B 534 VLHALGNPE-LSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQ---IHKTSQCMWLMQALGFLLSALQVEEILKN 609 (963)
T ss_dssp HHHHTTCGG-GHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHhCCch-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccC---CCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999998866 99999999999999999999999999999999988753 36788999999999999999886778899
Q ss_pred HHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCC--------------------cccHHHHHHHHHH
Q 003289 620 LEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH--------------------PEAVADAIQRLWP 679 (833)
Q Consensus 620 l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--------------------~~~~~~~~~~~~~ 679 (833)
+..++.|+.+.|+++.++.. +++ ........+++++.+++.++. ++++..+++.+||
T Consensus 610 ~~~l~~~l~~~l~~~~~~~~-~~~--~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (963)
T 2x19_B 610 LHSLISPYIQQLEKLAEEIP-NPS--NKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ 686 (963)
T ss_dssp HHHHHHHHHHHHHHHHSSCS-CHH--HHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCC-CHH--HHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence 99999999999999865432 111 122344578888888887642 2567889999999
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCCccHhhhHHHHHHHhcCCcchhHHHHH
Q 003289 680 IFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHN 759 (833)
Q Consensus 680 ~l~~il~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~L~~~~~li~~fg~~~~~~~~~~~ 759 (833)
++..+++.+..++++.|.+|.++++++.++|..+.|++|++++.+...|+..+.++++++++.++..||.++.+.+.+.+
T Consensus 687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~~~~~~~~~ 766 (963)
T 2x19_B 687 LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPIEA 766 (963)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCTTTCHHHHH
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 99999999998999999999999999999999999999999999999999988899999999999999998778889999
Q ss_pred HHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCccCCcCC-cHHHHHHHHHcccccCchhhhhh
Q 003289 760 LIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSV-FPSLVDCSMIGITVQHRRRILIC 831 (833)
Q Consensus 760 ~~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~~~~~p~~~~~~~~-l~~~~~~~~~~l~~~~~~~~~~~ 831 (833)
+++.++.+++++++ .++.++||++++||.|+.++++++|..+++++. +..++++++.+++.+||++.++|
T Consensus 767 ~l~~~~~~~l~~~~--~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~ 837 (963)
T 2x19_B 767 LFLLVTSVTLTLFQ--QGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKAS 837 (963)
T ss_dssp HHHHHHHHHHHHHH--HCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHh--hCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHH
Confidence 99999999999887 346789999999999999999999999988887 99999999999999999998876
No 6
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=1e-66 Score=646.11 Aligned_cols=775 Identities=14% Similarity=0.215 Sum_probs=592.9
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHH
Q 003289 3 LQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG 82 (833)
Q Consensus 3 ~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~~ 82 (833)
.++++.++++.+|++ +++.|++|+++|+++|++|++|..|..+|.+ +.++++|||||++|+++|+++|..++++++..
T Consensus 14 ~~~~l~~~l~~~~~p-~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~-s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ 91 (1049)
T 3m1i_C 14 DIALLDQVVSTFYQG-SGVQQKQAQEILTKFQDNPDAWQKADQILQF-STNPQSKFIALSILDKLITRKWKLLPNDHRIG 91 (1049)
T ss_dssp CHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSTTGGGGHHHHHHH-CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHH
T ss_pred cHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHhCchHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHH
Confidence 367899999999865 5668999999999999999999999999986 57889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCcHHHHHHHHhhchhhcc
Q 003289 83 LQDSLNTLLKKFHKG------PPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVF 156 (833)
Q Consensus 83 lr~~Ll~~l~~~~~~------~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~~~~~~~~~L~iL~~l~Ee~~ 156 (833)
||+.|++++.+...+ ++.||+|+|.++|.++.+.+|+.||+ +++++++.+++++..++..+.+|..|+||+.
T Consensus 92 ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~--ll~~L~~~~~~~~~~~~~~l~~L~~l~eev~ 169 (1049)
T 3m1i_C 92 IRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPE--FIPELIGSSSSSVNVCENNMIVLKLLSEEVF 169 (1049)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTT--HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchH--HHHHHHHHHccChHHHHHHHHHHHHHHHHHH
Confidence 999999999986433 37899999999999999999899999 9999999987554457889999999999998
Q ss_pred cccc-cCChhHHHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHhhccCCCCccccccchhHHHHHh-ccC
Q 003289 157 NYKI-AARPERRRQFEKELTSQMEVALSTLTACLHI---NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALS-SLH 231 (833)
Q Consensus 157 ~~~~-~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~---~~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~~~-~L~ 231 (833)
+.+. ..+..||.++++.+..+++.|++++.++++. ++++..+++|+.+|+.| ++.+.+...++++.+++ .+.
T Consensus 170 ~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~w---i~~~~~~~~~ll~~l~~~~l~ 246 (1049)
T 3m1i_C 170 DFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT 246 (1049)
T ss_dssp TSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH
T ss_pred HhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh---CCHHHHhhhhHHHHHHHHhCC
Confidence 6422 3456778888899999999999999988865 36889999999999987 55555556789998884 567
Q ss_pred CcchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHh------------hHHHhhhc-cCCHHHHHHHHHHHHH
Q 003289 232 SEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMS------------LKAHLTDS-SKDEEDVKAIARLFAD 298 (833)
Q Consensus 232 ~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~~~~------------l~~~l~~~-~~d~~~~~~l~~l~~~ 298 (833)
+++++.+|++||.++++...... ..+....+..+++.++. +...+..+ ++|+++.+.+|+++++
T Consensus 247 ~~~~~~~a~~~L~~i~~~~~~~~---~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~ 323 (1049)
T 3m1i_C 247 SPDTRAITLKCLTEVSNLKIPQD---NDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTT 323 (1049)
T ss_dssp SHHHHHHHHHHHHHHHHCCCCTT---CHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHhCCCCcc---hhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHH
Confidence 88999999999999998753210 00011223334444433 22233222 4456788899999999
Q ss_pred HhhHHHHHHHcCC---chhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHhhcccccccCcccchHHHHHHHHHHhHH
Q 003289 299 MGDSYVELIATGS---DESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRS 375 (833)
Q Consensus 299 ~~~~~~~~l~~~~---~~~~~~l~~ll~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (833)
+++.+...+.+.+ +.+..++++++.++.+++++++..+++||+.+.+++... +.....+++
T Consensus 324 ~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~----------------~~~~~~~~~ 387 (1049)
T 3m1i_C 324 YLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE----------------PLKKHIYEE 387 (1049)
T ss_dssp HHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHS----------------TTCGGGGHH
T ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhc----------------hhHHHHHHH
Confidence 9999998887532 235567899999999999999999999999999876320 012357789
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCh-hhhHHhHhhhhcccccCCccchhhhhhhchhHHHHHHHhhcChhHHHHHHHHHHH
Q 003289 376 AYESLVSLVSFRVQYPQDYQDLSL-EDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFV 454 (833)
Q Consensus 376 ~~~~ll~~l~~k~~~p~d~~~~~~-d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~ 454 (833)
++.+++.+++.||.||+|. .|.+ |+.+.|+++|.+ .+ .+ .+++++++++..++.+.+ +.+++.+.+.+.
T Consensus 388 ~l~~Lv~~ll~~m~~~ed~-~~~~dd~~e~~r~~~~d----~d-~~---~~~~~~~~~L~~l~~~~~-~~~l~~v~~~l~ 457 (1049)
T 3m1i_C 388 ICSQLRLVIIENMVRPEEV-LVVENDEGEIVREFVKE----SD-TI---QLYKSEREVLVYLTHLNV-IDTEEIMISKLA 457 (1049)
T ss_dssp HHHHHHHHHHHTCCCCTTC-CEEECTTSCEEECSSCC----HH-HH---HHHHHHHHHHHHHHHHCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcce-eeeeCCCCcchHhhhcc----ch-HH---HHHHHHHHHHHHHHccCH-HHHHHHHHHHHH
Confidence 9999999999999998764 3432 333344444432 00 00 012238899999987665 678898888888
Q ss_pred HhHhhcCCCCCCcchhhHHHHHHHHhhcccCccc-cccHHHHHhhccCCC-------ChHHHHHHHHHHHHhchHHHhhC
Q 003289 455 EGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE-AEVMPQVMALLPKLP-------QQPQLLQTVCLTIGAYSKWFDAA 526 (833)
Q Consensus 455 ~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~~-~~~l~~l~~~l~~l~-------~~~~v~~t~~~~ig~y~~~l~~~ 526 (833)
+.+.. ...+|+.+||++|+++++++.+.... +.+++++++.+.+++ .||.++.++++++|+|++|+..|
T Consensus 458 ~~l~~---~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~ 534 (1049)
T 3m1i_C 458 RQIDG---SEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH 534 (1049)
T ss_dssp HHHTS---SSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC
T ss_pred HHhCC---CCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH
Confidence 76531 25789999999999999999887552 355788887764332 26788889999999999999999
Q ss_pred CCChhhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhh--------cCHHHHHHHHHHHhcCcCCCCCCHhhH
Q 003289 527 SSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLC--------GYLDGLYNVYRTAVNGEGSLKVSAEDS 597 (833)
Q Consensus 527 p~~~~~l~~~l~~l~~~l~~~-~~v~~~A~~al~~l~~~~~~~l~--------~~l~~ll~~l~~~l~~~~~~~l~~~~~ 597 (833)
|+ +++++++.++.+++++ .+|+.+||+||.+||++|++++. ||++.+++.+..++. .++.++.
T Consensus 535 ~~---~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~-----~~~~~~~ 606 (1049)
T 3m1i_C 535 WN---FLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTA-----DLQPQQV 606 (1049)
T ss_dssp HH---HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHT-----TSCHHHH
T ss_pred HH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHH-----hCCHHHH
Confidence 86 9999999999999875 35999999999999999999886 999999999999886 3678889
Q ss_pred HHHHHHHHHHHhcCCh-HHHHHHHHHhhhhhHHHHHHHHhcCCCccccc----CchhhhHHHHHHHHhhhccCCcccHHH
Q 003289 598 LHLVEALSMVITELPQ-VDAKKALEMLCLPVVTPLQEIINQGPEILQKK----HPRDLTVHIDRFAYIFRYVNHPEAVAD 672 (833)
Q Consensus 598 ~~l~eai~~vi~~~~~-~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~~~~~~~~~~~~ 672 (833)
..+|||+|.+++..|+ +...+++..++.|+++.|.+++.+...+++.. ..+.+...+++++.+.+.++ ..+.+
T Consensus 607 ~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~--~~f~p 684 (1049)
T 3m1i_C 607 HTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMG--ADFYP 684 (1049)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHG--GGGHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhh--HHHHH
Confidence 9999999999999985 56779999999999999999886543221110 11233344566666655543 22222
Q ss_pred HHHHHH----HHHHHHHHhh-------c----CCh--HHHHHHHHHHHHHHHH-------hhhhhhhhHHHHHHHHHHHH
Q 003289 673 AIQRLW----PIFKAIFDIR-------A----WDM--RTMESLCRACKYAVRT-------SKRFMGITIGAILEEIQGLY 728 (833)
Q Consensus 673 ~~~~~~----~~l~~il~~~-------~----~~~--~v~e~~~~~~~~~~~~-------~~~~~~~~l~~l~~~l~~~~ 728 (833)
.+..++ .++....+.. + ..+ ...+.+...+.+.++. ++..+.|++|++++.++..|
T Consensus 685 ~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~ 764 (1049)
T 3m1i_C 685 QLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDY 764 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 222222 2222111100 0 001 1112222222222222 23445688999999999999
Q ss_pred hhcCCcc-----HhhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCcc
Q 003289 729 QQHQQPC-----FLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLF 803 (833)
Q Consensus 729 ~~~~~~~-----~L~~~~~li~~fg~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~~~~~p~~~ 803 (833)
++ +.++ ++++++.++..+|.. +.+.+.+++..+++++++++. ++.+++||++++||.|+.+++++||..+
T Consensus 765 ~~-~~~~~~~~~~l~l~~~ii~~~~~~--~~~~l~~i~~~l~~~~~~~i~--~~~~~~pd~~~~~f~ll~~i~~~~~~~l 839 (1049)
T 3m1i_C 765 MN-NVPDARDAEVLNCMTTVVEKVGHM--IPQGVILILQSVFECTLDMIN--KDFTEYPEHRVEFYKLLKVINEKSFAAF 839 (1049)
T ss_dssp HH-SCGGGCCTHHHHHHHHHHHHHGGG--CHHHHHHHHHHHHHHHHHHHS--SCSSSSHHHHHHHHHHHHHHHHHCTHHH
T ss_pred Hh-CCcccccHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHh--cchhhCHHHHHHHHHHHHHHHHhCHHHH
Confidence 87 3444 999999999999954 888999999999999999997 4578899999999999999999999998
Q ss_pred CC-cC-CcHHHHHHHHHcccccCchhhhhh
Q 003289 804 IP-SS-VFPSLVDCSMIGITVQHRRRILIC 831 (833)
Q Consensus 804 ~~-~~-~l~~~~~~~~~~l~~~~~~~~~~~ 831 (833)
++ ++ .+..+++++++|++.+||++.+++
T Consensus 840 ~~~~~~~~~~v~~~~~~al~~~~~~~~~~~ 869 (1049)
T 3m1i_C 840 LELPPAAFKLFVDAICWAFKHNNRDVEVNG 869 (1049)
T ss_dssp HHSCHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 74 44 489999999999999999998876
No 7
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=100.00 E-value=7.9e-57 Score=558.47 Aligned_cols=764 Identities=15% Similarity=0.181 Sum_probs=555.7
Q ss_pred hHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCCCCChhhHH
Q 003289 3 LQNTVKEALNALYHH-PDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVR 81 (833)
Q Consensus 3 ~~~~v~~al~~ly~~-~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~ 81 (833)
..++|.++++.+|++ +|++.|++|+++|+++|++|++|..+..+|.+++.++++||||+++|+++|+++|..++++++.
T Consensus 9 ~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~ 88 (1204)
T 3a6p_A 9 LCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKV 88 (1204)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 356799999999986 6888999999999999999999998888776446788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCcHHHHHHHHhhchhhccc
Q 003289 82 GLQDSLNTLLKKFHK----GPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFN 157 (833)
Q Consensus 82 ~lr~~Ll~~l~~~~~----~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~~~~~~~~~L~iL~~l~Ee~~~ 157 (833)
.||+.+++++.+... .++.||+|+|.+++.|+.+.+|+.||+ +++++++.+++++..++..+.+|..|+||+.+
T Consensus 89 ~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~--ll~~L~~~~~~~~~~~e~~L~iL~~L~Eev~~ 166 (1204)
T 3a6p_A 89 YLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPD--MLIELDTLSKQGETQTELVMFILLRLAEDVVT 166 (1204)
T ss_dssp HHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTT--HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchH--HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcc
Confidence 999999999987532 478999999999999999999999999 99999998877666678999999999999876
Q ss_pred ccccCChhHHHHHHHHHHHHHHHHHHHHHhhhhh---------------------hHHHHHHHHHHHHHhhccCCCCccc
Q 003289 158 YKIAARPERRRQFEKELTSQMEVALSTLTACLHI---------------------NELKEQVLEAFASWLRLKHRIPGSV 216 (833)
Q Consensus 158 ~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~---------------------~~~~~~~l~~~~~Wi~~~~~i~~~~ 216 (833)
.+. ....||+.+++.+.++++.|++++.++++. .++...+++|+.+|+.| ++.+.
T Consensus 167 ~~~-~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~W---i~~~~ 242 (1204)
T 3a6p_A 167 FQT-LPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDW---VSMSH 242 (1204)
T ss_dssp SCC-SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTT---SCHHH
T ss_pred ccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhc---cCHHH
Confidence 543 345788889999999999999888776643 24678899999999987 55555
Q ss_pred cccc--hhHHHHHhccCCcchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHH-HHhhHHHhh--h----ccCCHH
Q 003289 217 LASH--PLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQ-IMSLKAHLT--D----SSKDEE 287 (833)
Q Consensus 217 ~~~~--~ll~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~-~~~l~~~l~--~----~~~d~~ 287 (833)
+.+. .+++.++..+++++++.+|++||.+++++++.+ +++.+++..+.+. +-.+.+... . .++|.+
T Consensus 243 i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~-----~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e 317 (1204)
T 3a6p_A 243 ITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKL-----EDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYV 317 (1204)
T ss_dssp HHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSCH-----HHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHH
T ss_pred HHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCCh-----hhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHH
Confidence 4433 599999999999999999999999999876531 1223333322111 111222211 1 223457
Q ss_pred HHHHHHHHHHHHhhHHHHHHHc-----CCchhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHhhcccccccCcccch
Q 003289 288 DVKAIARLFADMGDSYVELIAT-----GSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASA 362 (833)
Q Consensus 288 ~~~~l~~l~~~~~~~~~~~l~~-----~~~~~~~~l~~ll~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~ 362 (833)
+.+.+|++++.+|+.+...+.+ .++.+..++++++.++.||+.+++..+++||+.+.+.... .
T Consensus 318 ~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~-------~----- 385 (1204)
T 3a6p_A 318 FLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEIL-------S----- 385 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTT-------T-----
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccc-------c-----
Confidence 8899999999999987776653 3456889999999999999999999999999987764321 0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH---HhhccCCCCCCC----CC------hhh-hHHhHhhhhcccccCCccchhhhhhhc
Q 003289 363 EAERSRRLQVFRSAYESLVSLV---SFRVQYPQDYQD----LS------LED-LKEFKHTRYDLACCSSSTLTESVMLIA 428 (833)
Q Consensus 363 ~~~~~~~~~~~~~~~~~ll~~l---~~k~~~p~d~~~----~~------~d~-~~~f~~~R~~~~~~~~~~~~~~~~~~~ 428 (833)
..+.+.+++.+|+.++ +.||.||++.+. |. ++| .+.|.+||++
T Consensus 386 ------~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~----------------- 442 (1204)
T 3a6p_A 386 ------RDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQ----------------- 442 (1204)
T ss_dssp ------TCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHH-----------------
T ss_pred ------ccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHH-----------------
Confidence 0135789999999999 899999985431 21 112 2578999999
Q ss_pred hhHHHHHHHhhcChhHHHHHHHHHHHHhHhhc--------------------CCCCCCcchhhHHHHHHHHhhcccCcc-
Q 003289 429 VADVLIDAASVLGGDATLKILYIKFVEGVACC--------------------GNKHNEWRPAEAALFCIRAISTYVSVV- 487 (833)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~--------------------~~~~~~w~~~Eaal~~l~~i~e~~~~~- 487 (833)
++|+++.++.+.+ +..+.++.+.+.+.+.+. ...+..|...|+..+++.++++++...
T Consensus 443 ~~d~l~~i~~v~p-~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~ 521 (1204)
T 3a6p_A 443 QGEVMRLACRLDP-KTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTL 521 (1204)
T ss_dssp HHHHHHHHHHHCH-HHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCH-HHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999998875 556666666554443221 001346889999999999998887211
Q ss_pred ---c--cccHHHHHhhccCC-CChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCC-------------H
Q 003289 488 ---E--AEVMPQVMALLPKL-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-------------E 548 (833)
Q Consensus 488 ---~--~~~l~~l~~~l~~l-~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~-------------~ 548 (833)
. ...++++++.+.++ +.||.++.+.+.++|+|+.|+.+||+ ++++++++++.++.++ +
T Consensus 522 e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~---~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k 598 (1204)
T 3a6p_A 522 NREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPE---FLPQVFSKLFSSVTFETVEESKAPRTRAVR 598 (1204)
T ss_dssp CTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGG---GHHHHHHHHHHHHHCCTTCSTTSCCCHHHH
T ss_pred ccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCch---HHHHHHHHHHHhhccCCcccccccccHHHH
Confidence 1 13467888887665 35999999999999999999999997 9999999999776441 1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCC-CCHhhHHHHHHHHHHHHhcCChH-HHHHHHHHhhhh
Q 003289 549 DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLK-VSAEDSLHLVEALSMVITELPQV-DAKKALEMLCLP 626 (833)
Q Consensus 549 ~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~-l~~~~~~~l~eai~~vi~~~~~~-~~~~~l~~l~~p 626 (833)
.++.+|+++|.+||++|++.|.||+++|.+.+..++..+ . ++.+++..+++|++.+...++++ +...+++.++.|
T Consensus 599 ~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~---~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P 675 (1204)
T 3a6p_A 599 NVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNE---LLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAP 675 (1204)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHST---TTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc---ccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 499999999999999999999999999999999988754 4 78999999999999886665554 555779999999
Q ss_pred hHHHHHH-----HHhcCC----------Cc-----ccc-cC-chhhhHHH----HHHHHh-h--------hc--c-----
Q 003289 627 VVTPLQE-----IINQGP----------EI-----LQK-KH-PRDLTVHI----DRFAYI-F--------RY--V----- 664 (833)
Q Consensus 627 ~~~~l~~-----~~~~~~----------~~-----~~~-~~-~~~~~~~l----~~l~~~-~--------~~--~----- 664 (833)
+++.|.+ .+.... .. .++ .. ..++...+ +.+..+ . ++ +
T Consensus 676 ~~~~w~~~~~~~~~s~~~~f~~~~G~~~~~~~~~~~d~~~~~r~~l~~~~~~l~~~l~r~~~~~~~~~~~~~gf~~~~~~ 755 (1204)
T 3a6p_A 676 VASIWLSQDMHRVLSDVDAFIAYVGTDQKSCDPGLEDPCGLNRARMSFCVYSILGVVKRTCWPTDLEEAKAGGFVVGYTS 755 (1204)
T ss_dssp HHHHHSCHHHHHHHHCHHHHHHHHTSSCC--CTTCCTHHHHHHHHHHHHHHHHHHHHHHCCCCSSHHHHHHTTCEEEECS
T ss_pred HHHHHccHHHHHhhcCHHHHHHHhCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhcCCCChhhhhcCCceeccCC
Confidence 9998874 222111 00 000 00 01111111 222221 0 10 0
Q ss_pred CC----cccHHHHHHHHHHHHHHHHHhhc--CChHHHHHHH-------------HHHHHHHHHh-hhhhh-hhHHHHHHH
Q 003289 665 NH----PEAVADAIQRLWPIFKAIFDIRA--WDMRTMESLC-------------RACKYAVRTS-KRFMG-ITIGAILEE 723 (833)
Q Consensus 665 ~~----~~~~~~~~~~~~~~l~~il~~~~--~~~~v~e~~~-------------~~~~~~~~~~-~~~~~-~~l~~l~~~ 723 (833)
++ .+|+.+.++.+||.+.+++..+. +++++.+.++ ++...++... ..+.. +..+...+.
T Consensus 756 ~~~p~~~~p~~~~i~~ilP~ll~Ll~~~~~l~~p~~~~~l~~~~~~~~~~~~~er~~~~g~~~~~~~~~~~~~~~~~~~~ 835 (1204)
T 3a6p_A 756 SGNPIFRNPCTEQILKLLDNLLALIRTHNTLYAPEMLAKMAEPFTKALDMLDAEKSAILGLPQPLLELNDSPVFKTVLER 835 (1204)
T ss_dssp SCCEEECCTTHHHHHHHHHHHHHHHHHHHHTTSHHHHTTSCGGGTTTTSCCHHHHHHHTCCCCCCCCTTCCCSCCCHHHH
T ss_pred CCCccccCchHHHHHHHhHHHHHHHHHHHHhcCcHhhhhcCHHHHHHHhccHHHHHHhcCCCcccccccccCCCcCcHHH
Confidence 01 26888999999999999998876 7888888877 4444333221 11111 222455666
Q ss_pred HHHHHhhcCCccHhhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCcc
Q 003289 724 IQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLF 803 (833)
Q Consensus 724 l~~~~~~~~~~~~L~~~~~li~~fg~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~~~~~p~~~ 803 (833)
+-..+...+.+||..+.+. ...+|.+ ++.. .++-..+.+.++..+...+ ...-+++++.+| .-++++||..+
T Consensus 836 l~~~~~~~re~~y~~lg~~-~~~l~~~--fy~~-~~l~~~l~~~~f~~l~~~~-~~~l~~li~~~~---~p~i~~CP~~~ 907 (1204)
T 3a6p_A 836 MQRFFSTLYENCFHILGKA-GPSMQQD--FYTV-EDLATQLLSSAFVNLNNIP-DYRLRPMLRVFV---KPLVLFCPPEH 907 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHCTT--TTTS-TTHHHHHHHHTTSSTTTSC-HHHHHHHHHHTH---HHHHHTCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHH-hhccccc--ccCC-cchHHHHHHHHHhcchhcc-HHHHHHHHHHHH---HHHHhcCCHHH
Confidence 6677777777787766443 2334443 2221 1112223333333333211 123445666655 67889999888
Q ss_pred CCc---CCcHHHHHHHHHccc-----ccCchh
Q 003289 804 IPS---SVFPSLVDCSMIGIT-----VQHRRR 827 (833)
Q Consensus 804 ~~~---~~l~~~~~~~~~~l~-----~~~~~~ 827 (833)
..+ +.+.++|......|+ +.||++
T Consensus 908 ~~~~l~plL~~lf~~~~~~L~~~W~~i~~~~~ 939 (1204)
T 3a6p_A 908 YEALVSPILGPLFTYLHMRLSQKWQVINQRSL 939 (1204)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 876 789999999888887 677765
No 8
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=1.8e-39 Score=398.85 Aligned_cols=715 Identities=13% Similarity=0.123 Sum_probs=461.5
Q ss_pred CchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCC------C
Q 003289 1 MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVE------E 74 (833)
Q Consensus 1 ~~~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~------~ 74 (833)
|..+++|.+++.... ++|++.| |+++|++++++|+.|..+..++.+++.+.++|++|+++||++|+++|. .
T Consensus 1 M~d~~~l~~~L~~~~-spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~ 77 (960)
T 1wa5_C 1 MSDLETVAKFLAESV-IASTAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHL 77 (960)
T ss_dssp CCHHHHHHHHHHHTT-SGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBS
T ss_pred CCcHHHHHHHHHHhc-CCCHHHH--HHHHHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCC
Confidence 888999999999864 5687777 999999999999999999999987667789999999999999999997 7
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-CCcHHHHHHHHhhchh
Q 003289 75 LPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-PEFVPGFLELLTVLPE 153 (833)
Q Consensus 75 l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~~-~~~~~~~L~iL~~l~E 153 (833)
++++++..||+.|++.+.. .++.||+++|.+++.|+.+.+|++||+ +++++++.++++ +......|.+|..+++
T Consensus 78 l~~~~k~~ik~~ll~~l~~---~~~~ir~~l~~~ia~ia~~d~p~~Wp~--ll~~L~~~l~s~~~~~~~~aL~~l~~i~~ 152 (960)
T 1wa5_C 78 LPANNVELIKKEIVPLMIS---LPNNLQVQIGEAISSIADSDFPDRWPT--LLSDLASRLSNDDMVTNKGVLTVAHSIFK 152 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHSTTTCTT--HHHHHHTTCCSSCTTHHHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHhhCccchhH--HHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999988 568999999999999999998899999 999999998764 3456788889988887
Q ss_pred hcccccccCChhHHHHHHHHHHHHHHHHHHHHHhh---hhhh-----------HHHHHHHHHHHHHhhccCCCCcccccc
Q 003289 154 EVFNYKIAARPERRRQFEKELTSQMEVALSTLTAC---LHIN-----------ELKEQVLEAFASWLRLKHRIPGSVLAS 219 (833)
Q Consensus 154 e~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~---l~~~-----------~~~~~~l~~~~~Wi~~~~~i~~~~~~~ 219 (833)
+... .. ..++.+.+++..+...++.+++++... ++.+ ++...+++++.+-+.. .+|...
T Consensus 153 ~~~~-~~-~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~--~~~~~~--- 225 (960)
T 1wa5_C 153 RWRP-LF-RSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQ--DIPEFF--- 225 (960)
T ss_dssp GGTT-SC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSS--CCCHHH---
T ss_pred HHHH-hh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhc--cchHHH---
Confidence 5421 01 123445566666777778777776544 3221 1122344444332111 111100
Q ss_pred chhHHHHHhccCCcchHHHHHHHHHHHHhhhccCCCCCCC-CchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHH
Q 003289 220 HPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGAT-VNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFAD 298 (833)
Q Consensus 220 ~~ll~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~-~~~~~i~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~ 298 (833)
. +.....+..+..++.........+.+ +.... .+...+.+++.++.
T Consensus 226 ----~---------~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~--------------------~~~vk~~~~~~l~~ 272 (960)
T 1wa5_C 226 ----E---------DNIQVGMGIFHKYLSYSNPLLEDPDETEHASV--------------------LIKVKSSIQELVQL 272 (960)
T ss_dssp ----H---------HTHHHHHHHHHHHHSCCSCCCC------CCCH--------------------HHHHHHHHHHHHHH
T ss_pred ----H---------HHHHHHHHHHHHHHcCCCCcccCCcccccccH--------------------HHHHHHHHHHHHHH
Confidence 0 00111222222222211000000000 00000 01123466777777
Q ss_pred HhhHHHHHHHcCCchhHHHHHHHHhhhc-----CCCcchhhhhHHHHHHHHHHHhhcccccccCcccchHHHHHHHHHHh
Q 003289 299 MGDSYVELIATGSDESMLIVHALLEVAS-----HPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVF 373 (833)
Q Consensus 299 ~~~~~~~~l~~~~~~~~~~l~~ll~~~~-----~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (833)
+.+.+...+. +....+++.++..+. ..++.+...+++||..+.+.- ..+..+
T Consensus 273 l~~~~~~~f~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~--------------------~~~~~~ 329 (960)
T 1wa5_C 273 YTTRYEDVFG---PMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIP--------------------KYFEIF 329 (960)
T ss_dssp HHHHCHHHHH---HHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSH--------------------HHHGGG
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcH--------------------hHHHHH
Confidence 7766665553 244566666666543 235688899999998865421 123345
Q ss_pred H--HHHHHHH-HHHHhhccCCC-CCCCCChhhhHHhHhhhhcccc-cCCccchhhhhhhchhHHHHHHHhhcChhHHHHH
Q 003289 374 R--SAYESLV-SLVSFRVQYPQ-DYQDLSLEDLKEFKHTRYDLAC-CSSSTLTESVMLIAVADVLIDAASVLGGDATLKI 448 (833)
Q Consensus 374 ~--~~~~~ll-~~l~~k~~~p~-d~~~~~~d~~~~f~~~R~~~~~-~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~ 448 (833)
+ +++.+++ .+++..|.|++ |.+.|++|. ++| .|+++.+ +.. .+|+++++++..++...| +.+++.
T Consensus 330 ~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp-~e~--i~~d~e~~d~~------s~R~aa~~~L~~l~~~~~-~~v~~~ 399 (960)
T 1wa5_C 330 NNESAMNNITEQIILPNVTLREEDVELFEDDP-IEY--IRRDLEGSDTD------TRRRACTDFLKELKEKNE-VLVTNI 399 (960)
T ss_dssp CSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCH-HHH--HHHHHHC----------CHHHHHHHHHHHHHHHCH-HHHHHH
T ss_pred cCchHHHHHHHHHhHHhcCCCHHHHHHHhcCH-HHH--HHhccCccccc------CcHHHHHHHHHHHHHHcc-hhHHHH
Confidence 4 8999999 68899999975 556676553 223 2222221 111 134558899999998888 667766
Q ss_pred HHHHHHHhHhh-cCCCCCCcchhhHHHHHHHHhhcccCc---cccc-----cHHHHH-h----hccCC-CChHHHHHHHH
Q 003289 449 LYIKFVEGVAC-CGNKHNEWRPAEAALFCIRAISTYVSV---VEAE-----VMPQVM-A----LLPKL-PQQPQLLQTVC 513 (833)
Q Consensus 449 l~~~l~~~~~~-~~~~~~~w~~~Eaal~~l~~i~e~~~~---~~~~-----~l~~l~-~----~l~~l-~~~~~v~~t~~ 513 (833)
+.+.+.+.+.+ ..++..+|+.+|||+++++++++.... .... .+..++ + .+..- +.||.||.++|
T Consensus 400 ~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~ 479 (960)
T 1wa5_C 400 FLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAI 479 (960)
T ss_dssp HHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHH
Confidence 66666555432 111246899999999999999876421 1111 233332 2 22221 24999999999
Q ss_pred HHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHH-----------hhhhhhcCHHHHHHHHH
Q 003289 514 LTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDD-----------CRKKLCGYLDGLYNVYR 581 (833)
Q Consensus 514 ~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~-----------~~~~l~~~l~~ll~~l~ 581 (833)
+++|+|++|+ +|+ ++..+++.+++++.+++ .|+.+||+||.+||+. ++..+.||++++++.+.
T Consensus 480 ~~lg~~~~~~--~~~---~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~ 554 (960)
T 1wa5_C 480 KYIYTFRNQL--TKA---QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLI 554 (960)
T ss_dssp HHHHHTGGGS--CHH---HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHH
T ss_pred HHHHHHHhhC--CHH---HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHH
Confidence 9999999998 343 89999999999998763 5999999999999973 35778999999999999
Q ss_pred HHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhh
Q 003289 582 TAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIF 661 (833)
Q Consensus 582 ~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 661 (833)
.+++..........+...++++++.++...+ ++..+|+..++..++..+....++.. + ..-....+++++.++
T Consensus 555 ~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~-~~~~p~~~~l~~~L~~~l~~~~~~~~----~--~~~~~~~~e~l~~l~ 627 (960)
T 1wa5_C 555 ALILKHGSSPEKLAENEFLMRSIFRVLQTSE-DSIQPLFPQLLAQFIEIVTIMAKNPS----N--PRFTHYTFESIGAIL 627 (960)
T ss_dssp HHHHTTCCCHHHHTSCHHHHHHHHHHHHHHT-TTTGGGHHHHHHHHHHHHHHHTTSCC----C--HHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCcccccHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHhCCC----C--cHHHHHHHHHHHHHH
Confidence 9887421000012256799999999999875 44557888888888777776644321 1 111234789999998
Q ss_pred hccCCcccHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH--HHHhhcC-CccHhh
Q 003289 662 RYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQ--GLYQQHQ-QPCFLY 738 (833)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~--~~~~~~~-~~~~L~ 738 (833)
+. .+|+.+..+.+.+||++..+++.... ++.+.++.++..++... ..+.++++.+++.+. ..++... .+..+.
T Consensus 628 ~~-~~~~~~~~~~~~~~p~~~~iL~~~~~--~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 703 (960)
T 1wa5_C 628 NY-TQRQNLPLLVDSMMPTFLTVFSEDIQ--EFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVWELKGNIPAVTR 703 (960)
T ss_dssp HT-SCGGGHHHHHHHHHHHHHHHHHTTCT--TTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGGCCTTTHHHHHH
T ss_pred hc-CCcchHHHHHHHHHHHHHHHHHhhhH--hhHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHcCHHHhcCCCCchhHHH
Confidence 87 35677888999999999999986443 45666666666655543 223333333444433 3333321 122233
Q ss_pred hHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCc-cCCcCCcHHHHHHHH
Q 003289 739 LSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQL-FIPSSVFPSLVDCSM 817 (833)
Q Consensus 739 ~~~~li~~fg~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~~~~~p~~-~~~~~~l~~~~~~~~ 817 (833)
++...+...+. .+.+ ++.+++..-.++.. . .+| ...|.++..++.++|.. + .++++.++...+
T Consensus 704 ~L~~~~~~~~~--~~~~-----~~~~l~~~~~~~~~----~-~~~--~~a~~ll~~i~~~~~~~~~--~~yl~~i~~~l~ 767 (960)
T 1wa5_C 704 LLKSFIKTDSS--IFPD-----LVPVLGIFQRLIAS----K-AYE--VHGFDLLEHIMLLIDMNRL--RPYIKQIAVLLL 767 (960)
T ss_dssp HHHHHHHHHGG--GCSC-----SHHHHHHHHHHHTC----T-TTH--HHHHHHHHHHHHHSCHHHH--GGGHHHHHHHHH
T ss_pred HHHHHHHhChH--HHHH-----HHHHHHHHHHHhCC----C-ccc--chHHHHHHHHHHHCCHHHH--HHHHHHHHHHHH
Confidence 33333333221 1111 11111111111221 1 244 78899999999999977 6 468999999999
Q ss_pred HcccccCchhh
Q 003289 818 IGITVQHRRRI 828 (833)
Q Consensus 818 ~~l~~~~~~~~ 828 (833)
..++..+.+..
T Consensus 768 ~~l~~~~~~~~ 778 (960)
T 1wa5_C 768 QRLQNSKTERY 778 (960)
T ss_dssp HGGGSSCCHHH
T ss_pred HHHhhCCcHhH
Confidence 99887755543
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=4.6e-36 Score=365.11 Aligned_cols=674 Identities=13% Similarity=0.159 Sum_probs=465.3
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhcc-CCCchHHHHHHHHHHHHHhhcCCCCCChhhHH
Q 003289 3 LQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVR 81 (833)
Q Consensus 3 ~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~-~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~ 81 (833)
..+++.++++..+ ++|++.|++|+++|++++++|+.|..+..++.. .+.+.++|++|+..|++.|+++|..++++++.
T Consensus 11 ~~~~l~~~l~~~~-s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~ 89 (852)
T 4fdd_A 11 GLQQILQLLKESQ-SPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTD 89 (852)
T ss_dssp HHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHH
T ss_pred hHHHHHHHHHHHh-CcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHH
Confidence 4677888888876 469999999999999999999999999999985 46788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CcHHHHHHHHhhchhhcccccc
Q 003289 82 GLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVFNYKI 160 (833)
Q Consensus 82 ~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~~~-~~~~~~L~iL~~l~Ee~~~~~~ 160 (833)
.+|+.+++.+.. .++.||++++.+++.++.+.+++.||+ +++.+++.+++.. ......+.+|..+.++.....
T Consensus 90 ~ik~~ll~~l~~---~~~~vr~~~a~~i~~ia~~~~~~~wp~--ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~- 163 (852)
T 4fdd_A 90 FIKSECLNNIGD---SSPLIRATVGILITTIASKGELQNWPD--LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEIL- 163 (852)
T ss_dssp HHHHHHHTTTTC---SSHHHHHHHHHHHHHHHHHTTTTTCTT--HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHH-
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHhcCccccHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHh-
Confidence 999999998753 577899999999999999888889999 9999999887633 345677888877777653210
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHhhccCCCCccccccchhHHHHHhccCCcchHHH
Q 003289 161 AARPERRRQFEKELTSQMEVALSTLTACLHI--NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEA 238 (833)
Q Consensus 161 ~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~--~~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~~~~L~~~~~~~~ 238 (833)
.+ +.+....+.++..+.+.+.+ ++++..+++|+..++... +.
T Consensus 164 -----~~----~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~---~~------------------------ 207 (852)
T 4fdd_A 164 -----DS----DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISR---TQ------------------------ 207 (852)
T ss_dssp -----HH----CSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTT---CH------------------------
T ss_pred -----ch----hhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc---cH------------------------
Confidence 00 00011123344444444433 245555566555443310 00
Q ss_pred HHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHHHHcCCchhHHHH
Q 003289 239 SVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIV 318 (833)
Q Consensus 239 a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~l 318 (833)
.....+..+++.+..+ ..++|++..+..++.+..+++.+...+. ++...++
T Consensus 208 ---------------------~~~~~~~~~l~~l~~~-----~~d~~~~vr~~a~~~L~~l~~~~~~~~~---~~l~~l~ 258 (852)
T 4fdd_A 208 ---------------------ALMLHIDSFIENLFAL-----AGDEEPEVRKNVCRALVMLLEVRMDRLL---PHMHNIV 258 (852)
T ss_dssp ---------------------HHHTSHHHHHHHHHHH-----HTCCCHHHHHHHHHHHHHHHHHCHHHHG---GGHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHH-----cCCCCHHHHHHHHHHHHHHHHhCHHHHH---HHHHHHH
Confidence 0011112222222211 1245666677788888888887776664 3566789
Q ss_pred HHHHhhhcCCCcchhhhhHHHHHHHHHHHhhcccccccCcccchHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCC-
Q 003289 319 HALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDL- 397 (833)
Q Consensus 319 ~~ll~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~- 397 (833)
+.++.++.++++++...+++||..+.+.. .....++|++.+++..++.+|.|+++...|
T Consensus 259 ~~l~~~~~~~~~~vr~~a~e~l~~l~~~~--------------------~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~ 318 (852)
T 4fdd_A 259 EYMLQRTQDQDENVALEACEFWLTLAEQP--------------------ICKDVLVRHLPKLIPVLVNGMKYSDIDIILL 318 (852)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTTST--------------------THHHHHTTTHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHccCCcHHHHHHHHHHHHHHhcch--------------------hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHh
Confidence 99999999999999999999998876421 011245678889999999999887532221
Q ss_pred --C--hhhh--HHhHh--hhhcccccCCccchhhhhhhchhHHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcch
Q 003289 398 --S--LEDL--KEFKH--TRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRP 469 (833)
Q Consensus 398 --~--~d~~--~~f~~--~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~ 469 (833)
| +|+. +.+.. .|+. +.+.+..++...| +.++..+.+.+.+.+. +.+|+.
T Consensus 319 ~~d~~ed~~~dd~~~~~~vr~~-----------------a~~~L~~la~~~~-~~~~~~l~~~l~~~l~-----~~~~~~ 375 (852)
T 4fdd_A 319 KGDVEGGSGGDDTISDWNLRKC-----------------SAAALDVLANVYR-DELLPHILPLLKELLF-----HHEWVV 375 (852)
T ss_dssp HC------------CCCCHHHH-----------------HHHHHHHHHHHHG-GGGHHHHHHHHHHHHT-----CSSHHH
T ss_pred cCCcccccccccccccchHHHH-----------------HHHHHHHHHHhcc-HHHHHHHHHHHHHHhc-----CCCHHH
Confidence 1 1111 11111 2333 6778888777777 5677777777776653 468999
Q ss_pred hhHHHHHHHHhhcccCccccccHHHHHhhcc-CCC-ChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCC
Q 003289 470 AEAALFCIRAISTYVSVVEAEVMPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS 547 (833)
Q Consensus 470 ~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~-~l~-~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~ 547 (833)
+++++++++++++++...-.++++.++..+. .+. .++.||.++++++|++++|+...+. ..++..+++.++.++.++
T Consensus 376 R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~-~~~~~~ll~~L~~~L~d~ 454 (852)
T 4fdd_A 376 KESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP-DTYLKPLMTELLKRILDS 454 (852)
T ss_dssp HHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCT-TTTHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHhCC
Confidence 9999999999999886544456777777654 233 4899999999999999999976432 138899999999888654
Q ss_pred H-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHH-HHHHHHHhhh
Q 003289 548 E-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVD-AKKALEMLCL 625 (833)
Q Consensus 548 ~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~-~~~~l~~l~~ 625 (833)
+ .|+..|+.|+.++|+.+++.+.||++.++..+..++.. ...+....++++++.++..++..- ..+++..++.
T Consensus 455 ~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~-----~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p 529 (852)
T 4fdd_A 455 NKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSK-----YQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMP 529 (852)
T ss_dssp SHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHH-----hChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHH
Confidence 3 59999999999999999999999999999999998863 346677789999999987765432 2468888887
Q ss_pred hhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHhh---------------cC
Q 003289 626 PVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIR---------------AW 690 (833)
Q Consensus 626 p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~---------------~~ 690 (833)
++++.+..+... +. .. ...+++++.+...++ ..+.+++..+++.+..++... ..
T Consensus 530 ~l~~~~~~l~d~-----~~-~~---~~~~~~l~~i~~~~g--~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 598 (852)
T 4fdd_A 530 PLIQKWNMLKDE-----DK-DL---FPLLECLSSVATALQ--SGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAP 598 (852)
T ss_dssp HHHHHHHHSCTT-----CT-TH---HHHHHHHHHHHHHHG--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCC
T ss_pred HHHHHHHhcccc-----cH-HH---HHHHHHHHHHHHHHh--HhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCC
Confidence 777665433221 11 12 235777777777664 245555566555444444321 12
Q ss_pred ChHHHHHHHHHHHHHHHHhhhhhhhhH--HHHHHHHHHHHhhcC---CccHhhhHHHHHHHhcCCcchhHHHHHHHHHHH
Q 003289 691 DMRTMESLCRACKYAVRTSKRFMGITI--GAILEEIQGLYQQHQ---QPCFLYLSSEVIKIFGSDPSCASYLHNLIEALF 765 (833)
Q Consensus 691 ~~~v~e~~~~~~~~~~~~~~~~~~~~l--~~l~~~l~~~~~~~~---~~~~L~~~~~li~~fg~~~~~~~~~~~~~~~l~ 765 (833)
+.+++..++..++.+++.+|..+.+++ +.+++.+...+.... ..++..+++.++..+|.. +.+++..++..+.
T Consensus 599 d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~l~~~lp~l~ 676 (852)
T 4fdd_A 599 DKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQH--VKPCIADFMPILG 676 (852)
T ss_dssp CTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG--TGGGHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHH
Confidence 567888888999999999999888887 677777777664321 125677788888777754 6666665554433
Q ss_pred HHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCccCCcCCcHHHHHHHHHccc
Q 003289 766 KRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGIT 821 (833)
Q Consensus 766 ~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~~~~~l~ 821 (833)
. .|. .+++++.......++.+.++.+..+ .+++..++...+.-+.
T Consensus 677 ~----~l~-----~~~~~v~~~a~~alg~i~~~~~~~~--~p~~~~il~~L~~~l~ 721 (852)
T 4fdd_A 677 T----NLN-----PEFISVCNNATWAIGEISIQMGIEM--QPYIPMVLHQLVEIIN 721 (852)
T ss_dssp H----TCC-----TTSHHHHHHHHHHHHHHHHHHGGGG--GGGTHHHHHHHHHHHT
T ss_pred H----HcC-----ccchHHHHHHHHHHHHHHHHhhHhH--HHHHHHHHHHHHHHhC
Confidence 2 232 3456677776666777666554333 3455555555555444
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=1.9e-33 Score=343.57 Aligned_cols=695 Identities=13% Similarity=0.138 Sum_probs=479.6
Q ss_pred CchHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHhcC--hhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCC-----
Q 003289 1 MELQNTVKEALNAL-YHHPDDAVRMQADRWLQDFQHT--IDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDV----- 72 (833)
Q Consensus 1 ~~~~~~v~~al~~l-y~~~d~~~r~~A~~~L~~~q~s--~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w----- 72 (833)
|.. +++.+++... + ++|++.|++|+++|++++++ |+.|..+..++.+++.++++|++|+++|+++|+++|
T Consensus 1 Md~-~~l~~~L~~~~~-s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~ 78 (861)
T 2bpt_A 1 MST-AEFAQLLENSIL-SPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQ 78 (861)
T ss_dssp CCH-HHHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHH
T ss_pred CCH-HHHHHHHHHccc-CcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHH
Confidence 444 5789999887 6 56999999999999999986 999999999998644678999999999999998775
Q ss_pred ------CC-CChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccc-cccCCccchHHHHHhcCCC--CCcHH
Q 003289 73 ------EE-LPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISA-EDWGGGGIVNWLRDEMNSH--PEFVP 142 (833)
Q Consensus 73 ------~~-l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~-~~Wp~~~~~~~l~~~~~~~--~~~~~ 142 (833)
.. ++++++..+|+.|++.+.. .+..+|++++.+++.++.+.+| +.||+ +++.+++.+++. +....
T Consensus 79 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~---~~~~vr~~~~~~l~~i~~~~~p~~~w~~--ll~~L~~~l~~~~~~~~r~ 153 (861)
T 2bpt_A 79 QFAQRWITQVSPEAKNQIKTNALTALVS---IEPRIANAAAQLIAAIADIELPHGAWPE--LMKIMVDNTGAEQPENVKR 153 (861)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHGGGTCCHH--HHHHHHHHTSTTSCHHHHH
T ss_pred HHHHhHhhhCCHHHHHHHHHHHHHHHCC---CchHHHHHHHHHHHHHHHhhCcccccHH--HHHHHHHHHhcCCCHHHHH
Confidence 65 9999999999999998765 5678999999999999998876 49999 999999998763 34567
Q ss_pred HHHHHHhhchhhcccccccCChhHHHHHHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHhhccCCCCccccc
Q 003289 143 GFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHI----NELKEQVLEAFASWLRLKHRIPGSVLA 218 (833)
Q Consensus 143 ~~L~iL~~l~Ee~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~----~~~~~~~l~~~~~Wi~~~~~i~~~~~~ 218 (833)
..+.+|..+++++.... | .+....+.+++.+...+.+ ++++..+++|+..|+.+. ... +.
T Consensus 154 ~al~~l~~l~~~~~~~~-------~-----~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~---~~~-~~ 217 (861)
T 2bpt_A 154 ASLLALGYMCESADPQS-------Q-----ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI---KNN-ME 217 (861)
T ss_dssp HHHHHHHHHHHTSSTTS-------S-----TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC---HHH-HT
T ss_pred HHHHHHHHHHHcCChhh-------h-----HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH---HHH-cc
Confidence 78999999998764210 0 1223455666666665544 358888999998887652 000 00
Q ss_pred cchhHHHHHhccCCcchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHH
Q 003289 219 SHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFAD 298 (833)
Q Consensus 219 ~~~ll~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~ 298 (833)
... ....+++.+. ..+ .+.+.+..+..++.+..
T Consensus 218 -----------------------------------------~~~-~~~~ll~~l~---~~~--~~~~~~~r~~a~~~l~~ 250 (861)
T 2bpt_A 218 -----------------------------------------REG-ERNYLMQVVC---EAT--QAEDIEVQAAAFGCLCK 250 (861)
T ss_dssp -----------------------------------------SHH-HHHHHHHHHH---HHH--TCSCHHHHHHHHHHHHH
T ss_pred -----------------------------------------Chh-HHHHHHHHHH---HHh--cCCCHHHHHHHHHHHHH
Confidence 000 0000111110 001 12344444555666666
Q ss_pred HhhHHHHHHHcCCchhH-HHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHhhccccccc-CcccchHHHHHHHHHHhHHH
Q 003289 299 MGDSYVELIATGSDESM-LIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISF-GNEASAEAERSRRLQVFRSA 376 (833)
Q Consensus 299 ~~~~~~~~l~~~~~~~~-~~l~~ll~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 376 (833)
+++.+...+. +.+. .+++.++..+..+++++...+++||..+.+.......+..- +..|. ......+++
T Consensus 251 l~~~~~~~~~---~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 321 (861)
T 2bpt_A 251 IMSKYYTFMK---PYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPL------QSYNFALSS 321 (861)
T ss_dssp HHHHHGGGCH---HHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSC------CCCCHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCch------hhHHHHHHH
Confidence 6655543222 2334 56777777777888999999999999988754210000000 00000 000134567
Q ss_pred HHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhhcccccCCccchhhhhhhchhHHHHHHHhhcChhHHHHHHHHHHHHh
Q 003289 377 YESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEG 456 (833)
Q Consensus 377 ~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~ 456 (833)
+..++..++.++..+++.+ || +++ ..|.. +.+++..++..+| +.++..+.+.+.+.
T Consensus 322 ~~~il~~ll~~l~~~~~d~----~d-~~~-~~r~~-----------------a~~~L~~l~~~~~-~~~~~~l~~~l~~~ 377 (861)
T 2bpt_A 322 IKDVVPNLLNLLTRQNEDP----ED-DDW-NVSMS-----------------AGACLQLFAQNCG-NHILEPVLEFVEQN 377 (861)
T ss_dssp HHHHHHHHHHHTTCCCCC-----CC-CCC-HHHHH-----------------HHHHHHHHHHHHG-GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccc----cc-ccC-cHHHH-----------------HHHHHHHHHHHcc-HhHHHHHHHHHHHH
Confidence 7888888888887765321 11 112 34554 7788888887777 55677777776665
Q ss_pred HhhcCCCCCCcchhhHHHHHHHHhhcccC-ccccccHHHHHhhcc-CCC-ChHHHHHHHHHHHHhchHHHhhCCCChhhH
Q 003289 457 VACCGNKHNEWRPAEAALFCIRAISTYVS-VVEAEVMPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSIL 533 (833)
Q Consensus 457 ~~~~~~~~~~w~~~Eaal~~l~~i~e~~~-~~~~~~l~~l~~~l~-~l~-~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l 533 (833)
+. +.+|+.+|++++++++++++.. ..-.+++++++..+. .+. .++.||.++++++|+++.++..+.....++
T Consensus 378 l~-----~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 452 (861)
T 2bpt_A 378 IT-----ADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL 452 (861)
T ss_dssp TT-----CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH
T ss_pred cC-----CCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH
Confidence 42 4679999999999999998875 222345566665543 222 389999999999999999997641001378
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhh----hhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHh
Q 003289 534 ASVLSILTSGMSTSEDTAAAAALAFRHICDDCR----KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVIT 609 (833)
Q Consensus 534 ~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~----~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~ 609 (833)
+.+++.++.+++++..|+..|+.++..+++.+. ..+.||++.++..+.+.+... ..+.+.|..++++++.++.
T Consensus 453 ~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~---d~~~~vr~~a~~al~~l~~ 529 (861)
T 2bpt_A 453 PGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI---DNEFNARASAFSALTTMVE 529 (861)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS---CCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCc---CcchHHHHHHHHHHHHHHH
Confidence 999999988887765599999999999999986 668899999999998888642 1224678899999999999
Q ss_pred cCChHHHHHHHHHhhhhhHHHHHHHHhcCCC--c-cc-ccCchhhhHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHH
Q 003289 610 ELPQVDAKKALEMLCLPVVTPLQEIINQGPE--I-LQ-KKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIF 685 (833)
Q Consensus 610 ~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~--~-~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il 685 (833)
..+. +..+++..++.++++.+...+..... . ++ +....-....+++++.+++..+. .+.++...+++.+..++
T Consensus 530 ~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~l~~~l~~~l 606 (861)
T 2bpt_A 530 YATD-TVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS--SVEPVADMLMGLFFRLL 606 (861)
T ss_dssp HCCG-GGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG--GTGGGHHHHHHHHHHHH
T ss_pred Hcch-hhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHH
Confidence 9875 45678888888898888776422100 0 00 00011112466778887776642 34556678888888777
Q ss_pred HhhcCChHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCC---ccHhhhHHHHHHHhcCCcchhHHHHHHHH
Q 003289 686 DIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQ---PCFLYLSSEVIKIFGSDPSCASYLHNLIE 762 (833)
Q Consensus 686 ~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~---~~~L~~~~~li~~fg~~~~~~~~~~~~~~ 762 (833)
+....+ .+.+.++.++..+...+|..+.|+++.+++.+...++.... ...+.+++.++...|.. +.+++..++.
T Consensus 607 ~~~~~~-~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~l~~ 683 (861)
T 2bpt_A 607 EKKDSA-FIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEED--FRRYSDAMMN 683 (861)
T ss_dssp HSTTGG-GTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGG--GHHHHHHHHH
T ss_pred ccCCCC-cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchh--ccchHHHHHH
Confidence 654322 78899999999988888988899999999888887753221 25677788888888753 6666665555
Q ss_pred HHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCccCCcCCcHHHHHHHHHccc
Q 003289 763 ALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGIT 821 (833)
Q Consensus 763 ~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~~~~~l~ 821 (833)
.+. ..+.. .+.++++....+..+..+.++.+..|. +++..++...+.++.
T Consensus 684 ~l~----~~l~~---~~~~~~vr~~~~~~l~~l~~~~~~~~~--~~l~~~l~~l~~~~~ 733 (861)
T 2bpt_A 684 VLA----QMISN---PNARRELKPAVLSVFGDIASNIGADFI--PYLNDIMALCVAAQN 733 (861)
T ss_dssp HHH----HHHHC---TTCCTTHHHHHHHHHHHHHHHHGGGGH--HHHHHHHHHHHHHHT
T ss_pred HHH----HHhCC---ccccHhhhHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHh
Confidence 443 33432 235689999999999999998877663 356666666666555
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=7e-30 Score=312.59 Aligned_cols=693 Identities=12% Similarity=0.118 Sum_probs=462.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhHHHHHHHHhccCCCchHHHHHHHHHHHHHhh-----------cCC
Q 003289 6 TVKEALNALYHHPDDAVRMQADRWLQDFQHT--IDAWQVADNLLHDATSNLETLIFCSQTLRSKVQ-----------RDV 72 (833)
Q Consensus 6 ~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s--~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~-----------~~w 72 (833)
++.+++..++ ++|++.|++|+++|++++++ |+.|..+..++.+++.++.+|++|+++|++.+. +.|
T Consensus 2 ~l~~~L~~~~-s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w 80 (876)
T 1qgr_A 2 ELITILEKTV-SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (876)
T ss_dssp CHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred cHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhh
Confidence 4667777775 57999999999999999987 999999999998654678899999999999985 558
Q ss_pred CCCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccc-cccCCccchHHHHHhcCCC---CCcHHHHHHHH
Q 003289 73 EELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISA-EDWGGGGIVNWLRDEMNSH---PEFVPGFLELL 148 (833)
Q Consensus 73 ~~l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~-~~Wp~~~~~~~l~~~~~~~---~~~~~~~L~iL 148 (833)
..++++.+..+|+.+++.+.. .+..+ ++++.+++.++...++ +.||+ +++.+.+.+++. +......+.+|
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~---~~~~~-~~~~~~l~~i~~~~~~~~~w~~--ll~~l~~~l~~~~~~~~~r~~al~~l 154 (876)
T 1qgr_A 81 LAIDANARREVKNYVLHTLGT---ETYRP-SSASQCVAGIACAEIPVNQWPE--LIPQLVANVTNPNSTEHMKESTLEAI 154 (876)
T ss_dssp HTSCHHHHHHHHHHHHHHTTT---CCSSS-CHHHHHHHHHHHHHGGGTCCTT--HHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhCC---CcHHH-HHHHHHHHHHHHhhCcccccHH--HHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 999999999999999998765 34456 9999999999987765 79999 999999888653 23456788999
Q ss_pred hhchhhcccccccCChhHHHHHHHHHHHHHHHHHHHHHhhhhhh----HHHHHHHHHHHHHhhccCCCCccccccchhHH
Q 003289 149 TVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----ELKEQVLEAFASWLRLKHRIPGSVLASHPLVL 224 (833)
Q Consensus 149 ~~l~Ee~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~----~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~ 224 (833)
..+++++.. +.+....+.+++.+.+.+.++ +++..+++|+..|+.+. +.+ +.
T Consensus 155 ~~l~~~~~~--------------~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~---~~~-~~------ 210 (876)
T 1qgr_A 155 GYICQDIDP--------------EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT---KAN-FD------ 210 (876)
T ss_dssp HHHHHHSCH--------------HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC---HHH-HT------
T ss_pred HHHHHhcCH--------------hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH---HHH-HH------
Confidence 988887531 113455667777776666543 57788888888887641 100 00
Q ss_pred HHHhccCCcchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHH
Q 003289 225 TALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYV 304 (833)
Q Consensus 225 ~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~~~~~ 304 (833)
.. .....+++.+.. .+ .+.|++.....++.+..++..+.
T Consensus 211 -----------------------------------~~-~~~~~il~~l~~---~~--~~~~~~vr~~a~~~l~~l~~~~~ 249 (876)
T 1qgr_A 211 -----------------------------------KE-SERHFIMQVVCE---AT--QCPDTRVRVAALQNLVKIMSLYY 249 (876)
T ss_dssp -----------------------------------SH-HHHHHHHHHHHH---HT--TCSSHHHHHHHHHHHHHHHHHSG
T ss_pred -----------------------------------hH-HHHHHHHHHHHH---Hc--CCCCHHHHHHHHHHHHHHHHHhH
Confidence 00 000001111100 00 12333444455555555554433
Q ss_pred HHHHcCCchhH-HHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHhhcccccccCcccchHHHH---HHHHHHhHHHHHHH
Q 003289 305 ELIATGSDESM-LIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAER---SRRLQVFRSAYESL 380 (833)
Q Consensus 305 ~~l~~~~~~~~-~~l~~ll~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l 380 (833)
..+. +.+. .+++.++....++++++...+++||..+.+...... .++++..++.. .......++++.++
T Consensus 250 ~~~~---~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l 322 (876)
T 1qgr_A 250 QYME---TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLA----IEASEAAEQGRPPEHTSKFYAKGALQYL 322 (876)
T ss_dssp GGCH---HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHSSCCSSCCCCHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHh----hhhccccccCCCccchhHHHHHHHHHHH
Confidence 2221 1233 567777777778888999999999999887532100 00000000000 00112334566777
Q ss_pred HHHHHhhccCCCCCCCCChhhhHHhHhhhhcccccCCccchhhhhhhchhHHHHHHHhhcChhHHHHHHHHHHHHhHhhc
Q 003289 381 VSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACC 460 (833)
Q Consensus 381 l~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~ 460 (833)
+..++..+...++.+ + | +++ ..|+. +.+++..++..+| +.++..+.+.+.+.+.
T Consensus 323 l~~ll~~l~~~~~d~--~-~--~~~-~~r~~-----------------a~~~l~~l~~~~~-~~~~~~~l~~l~~~l~-- 376 (876)
T 1qgr_A 323 VPILTQTLTKQDEND--D-D--DDW-NPCKA-----------------AGVCLMLLATCCE-DDIVPHVLPFIKEHIK-- 376 (876)
T ss_dssp HHHHHHHTTCCCSSC--C-T--TCC-CHHHH-----------------HHHHHHHHHHHHG-GGGHHHHHHHHHHHTT--
T ss_pred hHHHHHHhhcccccc--c-c--ccc-HHHHH-----------------HHHHHHHHHHHCc-HhhHHHHHHHHHHHcc--
Confidence 777777775443211 1 1 111 34444 7778888777777 4566666766665542
Q ss_pred CCCCCCcchhhHHHHHHHHhhcccCcc-ccccHHHHHhhcc-CCC-ChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHH
Q 003289 461 GNKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVL 537 (833)
Q Consensus 461 ~~~~~~w~~~Eaal~~l~~i~e~~~~~-~~~~l~~l~~~l~-~l~-~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l 537 (833)
+.+|+.+++++++++.+++.+.++ -.+++++++..+. .+. .++.||.++++++|++++++........+++.++
T Consensus 377 ---~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l 453 (876)
T 1qgr_A 377 ---NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLL 453 (876)
T ss_dssp ---CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHH
T ss_pred ---CCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHH
Confidence 468999999999999999987632 2345555665443 222 4799999999999999999876210112899999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHhh--------------hhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHH
Q 003289 538 SILTSGMSTSEDTAAAAALAFRHICDDCR--------------KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEA 603 (833)
Q Consensus 538 ~~l~~~l~~~~~v~~~A~~al~~l~~~~~--------------~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~ea 603 (833)
+.++.++.++..|+..|+.++.++++.+. +.+.||++.++..+...+...+. -....+..++++
T Consensus 454 ~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~--~~~~~r~~~~~~ 531 (876)
T 1qgr_A 454 QCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDG--HQNNLRSSAYES 531 (876)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSS--CSTTHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCc--chhhHHHHHHHH
Confidence 99999998766699999999999999886 34889999999999998864311 123467889999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCC--cccc-cCchh-hhHHHHHHHHhhhccCCcccHHHHHHHHHH
Q 003289 604 LSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPE--ILQK-KHPRD-LTVHIDRFAYIFRYVNHPEAVADAIQRLWP 679 (833)
Q Consensus 604 i~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~--~~~~-~~~~~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 679 (833)
++.++...+. +..+++..++.+++..+...+.-... +.++ ..... ....+.+++.+.+..+. ..+.+++..++|
T Consensus 532 l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~l~~ 609 (876)
T 1qgr_A 532 LMEIVKNSAK-DCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQH-QDALQISDVVMA 609 (876)
T ss_dssp HHHHHHTCCS-TTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCH-HHHHTTHHHHHH
T ss_pred HHHHHHHCch-hhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhCh-hhhhHHHHHHHH
Confidence 9999999875 45678889999998888876432111 1110 00011 12245677777665431 334556677788
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCC----ccHhhhHHHHHHHhcCCcchhH
Q 003289 680 IFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQ----PCFLYLSSEVIKIFGSDPSCAS 755 (833)
Q Consensus 680 ~l~~il~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~----~~~L~~~~~li~~fg~~~~~~~ 755 (833)
.+..++........+.+.++.+++.++...|..+.|+++.+++.+...+..... ...+.+++.++...|.. +.+
T Consensus 610 ~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~ 687 (876)
T 1qgr_A 610 SLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSN--IIP 687 (876)
T ss_dssp HHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGG--GHH
T ss_pred HHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHh--hhh
Confidence 777766553222468899999999988888888889998888877776665422 24677888888888853 666
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCccCCcCCcHHHHHHHHHccc
Q 003289 756 YLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGIT 821 (833)
Q Consensus 756 ~~~~~~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~~~~~l~ 821 (833)
.+..++..+. ..+.. .+.++++....+..+..+....+..|.+ +++.++.....++.
T Consensus 688 ~~~~i~~~l~----~~l~~---~~~~~~~~~~~~~~l~~i~~~~g~~~~~--~l~~~~~~l~~~~~ 744 (876)
T 1qgr_A 688 FCDEVMQLLL----ENLGN---ENVHRSVKPQILSVFGDIALAIGGEFKK--YLEVVLNTLQQASQ 744 (876)
T ss_dssp HHHHHHHHHH----HHHTC---TTSCGGGHHHHHHHHHHHHHHHGGGGGG--GHHHHHHHHHHHHT
T ss_pred hHHHHHHHHH----HHhCC---ccccHHhhHHHHHHHHHHHHHhchhHHH--HHHHHHHHHHHHHh
Confidence 6555555433 44442 2346779999999999999877766533 67777777666664
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.92 E-value=1.8e-23 Score=235.94 Aligned_cols=432 Identities=13% Similarity=0.135 Sum_probs=292.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhc--ChhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcC-----------C
Q 003289 6 TVKEALNALYHHPDDAVRMQADRWLQDFQH--TIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRD-----------V 72 (833)
Q Consensus 6 ~v~~al~~ly~~~d~~~r~~A~~~L~~~q~--s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~-----------w 72 (833)
++.+++..++ ++|++.|++|+++|+++++ .|+.|..+..++.+++.++++|++|+++|++.++++ |
T Consensus 2 ~l~~~L~~~~-s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~ 80 (462)
T 1ibr_B 2 ELITILEKTV-SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (462)
T ss_dssp CHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred cHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhh
Confidence 4667787775 5699999999999999998 599999999999875457899999999999999887 5
Q ss_pred CCCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccc-cccCCccchHHHHHhcCCC---CCcHHHHHHHH
Q 003289 73 EELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISA-EDWGGGGIVNWLRDEMNSH---PEFVPGFLELL 148 (833)
Q Consensus 73 ~~l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~-~~Wp~~~~~~~l~~~~~~~---~~~~~~~L~iL 148 (833)
..++++++..+|+.|++.+.. .+..+ ++++.+++.++.+.++ +.||+ +++.+++.+++. +......+.+|
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~---~~~~v-~~~~~~i~~ia~~~~~~~~w~~--ll~~L~~~l~~~~~~~~~r~~al~~l 154 (462)
T 1ibr_B 81 LAIDANARREVKNYVLQTLGT---ETYRP-SSASQCVAGIACAEIPVNQWPE--LIPQLVANVTNPNSTEHMKESTLEAI 154 (462)
T ss_dssp HTSCHHHHHHHHHHHHHHTTC---CCSSS-CSHHHHHHHHHHHHGGGTCCTT--HHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhCC---CCchh-hHHHHHHHHHHHHhccccccHH--HHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 789999999999999998765 44567 9999999999998766 48999 999999988654 33567889999
Q ss_pred hhchhhcccccccCChhHHHHHHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHhhccCCCCccccccchhHH
Q 003289 149 TVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHI----NELKEQVLEAFASWLRLKHRIPGSVLASHPLVL 224 (833)
Q Consensus 149 ~~l~Ee~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~----~~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~ 224 (833)
..++++..... +..+.+.+++.+...+.+ +.++..+++|+.+|+.+. ... ..
T Consensus 155 ~~l~~~~~~~~--------------~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~---~~~-~~------ 210 (462)
T 1ibr_B 155 GYICQDIDPEQ--------------LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT---KAN-FD------ 210 (462)
T ss_dssp HHHHHHSCGGG--------------TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT---HHH-HT------
T ss_pred HHHHHhCCchh--------------hHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH---HHh-hh------
Confidence 99998763211 223345566666666654 357888888888887641 000 00
Q ss_pred HHHhccCCcchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHH
Q 003289 225 TALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYV 304 (833)
Q Consensus 225 ~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~~~~~ 304 (833)
.. .....+++.+. . . ..+.|++..+..++.+..+++.+.
T Consensus 211 -----------------------------------~~-~~~~~l~~~l~---~-~-~~~~~~~vr~~~~~~l~~l~~~~~ 249 (462)
T 1ibr_B 211 -----------------------------------KE-SERHFIMQVVC---E-A-TQCPDTRVRVAALQNLVKIMSLYY 249 (462)
T ss_dssp -----------------------------------SH-HHHHHHHHHHH---H-H-TTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred -----------------------------------hh-HHHHHHHHHHH---H-h-cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 00 00000111111 1 1 123455666677888888877665
Q ss_pred HHHHcCCchhH-HHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHhhcccccc---cCcccchHHHHHHHHHHhHHHHHHH
Q 003289 305 ELIATGSDESM-LIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYIS---FGNEASAEAERSRRLQVFRSAYESL 380 (833)
Q Consensus 305 ~~l~~~~~~~~-~~l~~ll~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l 380 (833)
..+. +.+. .+++.++..+...++++...+++||..+.+.......+.. -+..+.. ......+++++..+
T Consensus 250 ~~~~---~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l 322 (462)
T 1ibr_B 250 QYME---TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPE----HTSKFYAKGALQYL 322 (462)
T ss_dssp GGCT---TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSS----CCCCCHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcc----chhHHHHHHHhhhc
Confidence 4432 2344 6777778777788889999999999998875421000000 0000000 01112445667778
Q ss_pred HHHHHhhccCCCCCCCCChhhhHHhHhhhhcccccCCccchhhhhhhchhHHHHHHHhhcChhHHHHHHHHHHHHhHhhc
Q 003289 381 VSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACC 460 (833)
Q Consensus 381 l~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~ 460 (833)
+..++..+...++. . +++ + ...|.. +.+++..++..+| +.++..+.+.+.+.+.
T Consensus 323 ~p~l~~~l~~~d~d-~-~~~---~-~~~r~~-----------------a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~-- 376 (462)
T 1ibr_B 323 VPILTQTLTKQDEN-D-DDD---D-WNPCKA-----------------AGVCLMLLATCCE-DDIVPHVLPFIKEHIK-- 376 (462)
T ss_dssp HHHHHHHTTCCCSS-C-CTT---C-CSHHHH-----------------HHHHHHHHHHHTT-TTHHHHHHHHHHHHTT--
T ss_pred cHHHHHHHHhcccc-c-ccc---c-chHHHH-----------------HHHHHHHHHHhcc-HHHHHHHHHHHHHHhc--
Confidence 88777766543221 1 111 1 123544 7889999998888 6677777777776542
Q ss_pred CCCCCCcchhhHHHHHHHHhhcccCcc-ccccHHHHHhhcc-CCC-ChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHH
Q 003289 461 GNKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVL 537 (833)
Q Consensus 461 ~~~~~~w~~~Eaal~~l~~i~e~~~~~-~~~~l~~l~~~l~-~l~-~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l 537 (833)
+.+|+.+++++++++++++++..+ -.+.++.++..+. .+. .++.||.++++++|++++++...-....++++++
T Consensus 377 ---~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll 453 (462)
T 1ibr_B 377 ---NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLL 453 (462)
T ss_dssp ---CSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHH
T ss_pred ---CCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence 568999999999999999977632 2334455555432 222 4799999999999999999987310013899999
Q ss_pred HHHHhccC
Q 003289 538 SILTSGMS 545 (833)
Q Consensus 538 ~~l~~~l~ 545 (833)
+.++.+++
T Consensus 454 ~~Ll~~L~ 461 (462)
T 1ibr_B 454 QCLIEGLS 461 (462)
T ss_dssp HHHHCC--
T ss_pred HHHHHHhc
Confidence 99988764
No 13
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.77 E-value=4e-15 Score=188.03 Aligned_cols=632 Identities=12% Similarity=0.088 Sum_probs=374.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh----------hHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCC
Q 003289 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTI----------DAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVE 73 (833)
Q Consensus 4 ~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~----------~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~ 73 (833)
..++.+.+..+ .++|++.|++|.+.|.+.-+.+ ..-......|. +.+..+|..|+..|.....
T Consensus 5 ~~~l~~lL~~l-~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~--d~~~~vR~~A~~~L~~l~~---- 77 (1230)
T 1u6g_C 5 SYHISNLLEKM-TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE--DKNGEVQNLAVKCLGPLVS---- 77 (1230)
T ss_dssp CHHHHHHHHHT-TCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHT----
T ss_pred HhHHHHHHHhc-CCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHH----
Confidence 45677788887 5789999999988887654433 22223444454 4678899999999988775
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcccc---------ccCCccchHHHHHhcCCCC--CcHH
Q 003289 74 ELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAE---------DWGGGGIVNWLRDEMNSHP--EFVP 142 (833)
Q Consensus 74 ~l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~---------~Wp~~~~~~~l~~~~~~~~--~~~~ 142 (833)
.++++....++..|+..+.. .+..+|...+.+|+.++...++. .|++ +++.+++.+.+++ ....
T Consensus 78 ~~~~~~~~~i~~~Ll~~l~d---~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~--llp~L~~~l~~~~~~~~~~ 152 (1230)
T 1u6g_C 78 KVKEYQVETIVDTLCTNMLS---DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKK--ITGRLTSAIAKQEDVSVQL 152 (1230)
T ss_dssp TSCHHHHHHHHHHHHHHTTC---SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHH--HHHHHHHHHSCCSCHHHHH
T ss_pred hCCHHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHH--HHHHHHHHHcCCCchHHHH
Confidence 35666667777777766543 45578999999999988776654 4888 8998888886322 2345
Q ss_pred HHHHHHhhchhhcccccccCChhHHHHHHHHHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHHHhhccCCCCccccccc
Q 003289 143 GFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN--ELKEQVLEAFASWLRLKHRIPGSVLASH 220 (833)
Q Consensus 143 ~~L~iL~~l~Ee~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~--~~~~~~l~~~~~Wi~~~~~i~~~~~~~~ 220 (833)
..+.+|..+++..... +..+.+.+++.+...+.++ .++..+++|+...+.. .+... ..
T Consensus 153 ~al~~l~~~~~~~~~~---------------l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~---~~~~~--~~ 212 (1230)
T 1u6g_C 153 EALDIMADMLSRQGGL---------------LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMS---CGNIV--FV 212 (1230)
T ss_dssp HHHHHHHHHHHHTCSS---------------CTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTT---C------CT
T ss_pred HHHHHHHHHHHHhHhH---------------HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHh---cCHHH--HH
Confidence 6677776666543321 0112345555555555442 4555566665555442 11100 00
Q ss_pred hhHHHHHhccCCcchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHh
Q 003289 221 PLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMG 300 (833)
Q Consensus 221 ~ll~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~ 300 (833)
.+ +..+++. +....+ .+.....++.+..++
T Consensus 213 ~~------------------------------------------l~~l~~~-------L~~~~~-~~~r~~a~~~l~~l~ 242 (1230)
T 1u6g_C 213 DL------------------------------------------IEHLLSE-------LSKNDS-MSTTRTYIQCIAAIS 242 (1230)
T ss_dssp TH------------------------------------------HHHHHHH-------HHHTCS-SCSCTTHHHHHHHHH
T ss_pred HH------------------------------------------HHHHHHH-------hccCCc-hhHHHHHHHHHHHHH
Confidence 11 1111111 100000 000111223333333
Q ss_pred hHHHHHHHcCCchhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHhhcccccccCcccchHHHHHHHHHHhHHHHHHH
Q 003289 301 DSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESL 380 (833)
Q Consensus 301 ~~~~~~l~~~~~~~~~~l~~ll~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 380 (833)
......+. +....+++.++..+..+++++...++..|..+.+... +.+.|++.++
T Consensus 243 ~~~~~~~~---~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~----------------------~~~~~~l~~l 297 (1230)
T 1u6g_C 243 RQAGHRIG---EYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP----------------------KEVYPHVSTI 297 (1230)
T ss_dssp HHSSGGGT---TSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT----------------------CCCHHHHHHH
T ss_pred HHhHHHHH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCh----------------------HHHHHhHHHH
Confidence 22111111 2345678888888888888888888888777665321 1345788899
Q ss_pred HHHHHhhccCCCCCCCCChhhhHHhHhhhhcccccCCccchhhhhhhchhHHHHHHHhhcChhHHHHHHHHHHHHhHhhc
Q 003289 381 VSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACC 460 (833)
Q Consensus 381 l~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~ 460 (833)
+..++..+.+++++ ..++|+.. . .+.+ +. .+.+..-+ ..+.+..
T Consensus 298 i~~ll~~l~~d~~~-~~~~d~~~--~-~~~~-------------------~~-------~~~~~~~~-~~~~~~~----- 341 (1230)
T 1u6g_C 298 INICLKYLTYDPNY-NYDDEDED--E-NAMD-------------------AD-------GGDDDDQG-SDDEYSD----- 341 (1230)
T ss_dssp HHHHTTCCCCC---------------------------------------------------------------------
T ss_pred HHHHHHHhCCCCCC-CCcccccc--c-cccc-------------------cc-------ccccchhh-ccccccc-----
Confidence 99999999886543 11111100 0 0000 00 00000000 0000000
Q ss_pred CCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcc-CCC-ChHHHHHHHHHHHHhchHHHhhC------------
Q 003289 461 GNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFDAA------------ 526 (833)
Q Consensus 461 ~~~~~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~-~l~-~~~~v~~t~~~~ig~y~~~l~~~------------ 526 (833)
.....|+-+++++.++..++...+..-.++++.++..+. .+. .++.+|..++..++.+..-+...
T Consensus 342 -~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 420 (1230)
T 1u6g_C 342 -DDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQ 420 (1230)
T ss_dssp ----CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------
T ss_pred -ccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCcccccc
Confidence 114679999999999999988544322334444444432 233 36788888888777665433210
Q ss_pred ---C--CChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHH
Q 003289 527 ---S--SDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHL 600 (833)
Q Consensus 527 ---p--~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l 600 (833)
+ ....+++.+++.+...+.+++ .++..++.++..++..++..+.+|++.++..+.+.+... .-..+.+...
T Consensus 421 ~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~---~~~~~v~~~a 497 (1230)
T 1u6g_C 421 GETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDK---SSSSNLKIDA 497 (1230)
T ss_dssp CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCS---SSCHHHHHHH
T ss_pred ccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCC---CCcchHHHHH
Confidence 0 001367777888777787654 588899999999999998888899999999999988753 1134678888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCC-----cccHHHHHH
Q 003289 601 VEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH-----PEAVADAIQ 675 (833)
Q Consensus 601 ~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-----~~~~~~~~~ 675 (833)
...++.++...+.+...+++..++..++.. ++.. ..+-...++..++.+++.++. +..+.++++
T Consensus 498 ~~~l~~~~~~~~~~~~~~~l~~llp~L~~~----l~d~-------~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~ 566 (1230)
T 1u6g_C 498 LSCLYVILCNHSPQVFHPHVQALVPPVVAC----VGDP-------FYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIK 566 (1230)
T ss_dssp HHHHHHHHHSSCGGGGHHHHTTTHHHHHHH----HTCS-------SHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHH
T ss_pred HHHHHHHHHhCCHHHHHhHHHHHHHHHHHH----Hccc-------chHHHHHHHHHHHHHHHHhcCcccccccchHHHHH
Confidence 888888888777666667776666665543 3221 121123356667766655432 235678889
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCC-ccHhhhHHHHHHHhcCCcchh
Q 003289 676 RLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQ-PCFLYLSSEVIKIFGSDPSCA 754 (833)
Q Consensus 676 ~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~-~~~L~~~~~li~~fg~~~~~~ 754 (833)
.++|.+...+.....+.++++.+..+++.++...|..+.+++|.+++.+......... ...+..++.++..-++. +..
T Consensus 567 ~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~-~~~ 645 (1230)
T 1u6g_C 567 DLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKI-DLR 645 (1230)
T ss_dssp HHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCC-CCH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCcccc-chH
Confidence 9999988887655677899999999999999999988888889888877665543211 12333444443211111 234
Q ss_pred HHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCcc
Q 003289 755 SYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLF 803 (833)
Q Consensus 755 ~~~~~~~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~~~~~p~~~ 803 (833)
+.+..++..+. ..+. +++++++.+....+.+++++++..+
T Consensus 646 ~~~~~i~~~L~----~~l~-----~~~~~~r~~a~~al~~l~~~~~~~~ 685 (1230)
T 1u6g_C 646 PVLGEGVPILA----SFLR-----KNQRALKLGTLSALDILIKNYSDSL 685 (1230)
T ss_dssp HHHHHHHHHHH----HHTT-----SCCHHHHHHHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHH----HHHH-----hCCHHHHHHHHHHHHHHHhcccccC
Confidence 44444444333 2232 5667889999999999999887543
No 14
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.64 E-value=2e-12 Score=157.01 Aligned_cols=527 Identities=13% Similarity=0.101 Sum_probs=320.5
Q ss_pred HHHHHHHHHHHHHhhccCCCCccccccchhHHHHHhccCCc--chHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHH
Q 003289 193 ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE--ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVP 270 (833)
Q Consensus 193 ~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~~~~L~~~--~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~ 270 (833)
.++..+..|+..-.... +.+ ...++++.+++.++++ ..++.++.++..++........ .......+..++|
T Consensus 105 ~vr~~~a~~i~~ia~~~---~~~--~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~--~~~~~~~~~~il~ 177 (852)
T 4fdd_A 105 LIRATVGILITTIASKG---ELQ--NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILD--SDVLDRPLNIMIP 177 (852)
T ss_dssp HHHHHHHHHHHHHHHHT---TTT--TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHH--HCSSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc---Ccc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhc--hhhhcchHHHHHH
Confidence 56666667766554431 111 1246888888887754 5688999999999865431100 0000112344555
Q ss_pred HHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHHHHcCCchhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHhhc
Q 003289 271 QIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKR 350 (833)
Q Consensus 271 ~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~l~~ll~~~~~~~~~v~~~~l~fw~~l~~~~~~~ 350 (833)
.+.+. + .+.+.+.....++.+..+.......+. +.+..+++.++..+..++.++...++..+..+.+...
T Consensus 178 ~l~~~---l--~~~~~~vR~~A~~aL~~~~~~~~~~~~---~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~-- 247 (852)
T 4fdd_A 178 KFLQF---F--KHSSPKIRSHAVACVNQFIISRTQALM---LHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRM-- 247 (852)
T ss_dssp HHTTT---T--TCSSHHHHHHHHHHHHTTTTTTCHHHH---TSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCH--
T ss_pred HHHHH---h--cCCCHHHHHHHHHHHHHHHhcccHHHH---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCH--
Confidence 44331 1 133444433444444433321111111 1344677888888888888888888888776655321
Q ss_pred ccccccCcccchHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhhcccccCCccchhhhhhhchh
Q 003289 351 DSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVA 430 (833)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~ 430 (833)
..+.+++..++..++.-+.-+ + + +.|.. +.
T Consensus 248 --------------------~~~~~~l~~l~~~l~~~~~~~------~-~------~vr~~-----------------a~ 277 (852)
T 4fdd_A 248 --------------------DRLLPHMHNIVEYMLQRTQDQ------D-E------NVALE-----------------AC 277 (852)
T ss_dssp --------------------HHHGGGHHHHHHHHHHHHTCS------S-H------HHHHH-----------------HH
T ss_pred --------------------HHHHHHHHHHHHHHHHHccCC------c-H------HHHHH-----------------HH
Confidence 123445555666555433211 1 1 12333 33
Q ss_pred HHHHHHHhh------cChhHHHHHHHHHHHHhHh---------hcC---C-CC----CCcchhhHHHHHHHHhhcccCcc
Q 003289 431 DVLIDAASV------LGGDATLKILYIKFVEGVA---------CCG---N-KH----NEWRPAEAALFCIRAISTYVSVV 487 (833)
Q Consensus 431 d~l~~~~~~------l~~~~~l~~l~~~l~~~~~---------~~~---~-~~----~~w~~~Eaal~~l~~i~e~~~~~ 487 (833)
+++..++.. +.+ ++..+...+-+.+. ... . .. .+|.-+.++.-++..+++..+.
T Consensus 278 e~l~~l~~~~~~~~~~~~--~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~- 354 (852)
T 4fdd_A 278 EFWLTLAEQPICKDVLVR--HLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD- 354 (852)
T ss_dssp HHHHHHTTSTTHHHHHTT--THHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG-
T ss_pred HHHHHHhcchhHHHHHHH--HHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH-
Confidence 333333211 111 12222222211110 000 0 01 5799999999999999988752
Q ss_pred ccccHHHHHhhccC-C-CChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHH
Q 003289 488 EAEVMPQVMALLPK-L-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDD 564 (833)
Q Consensus 488 ~~~~l~~l~~~l~~-l-~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~ 564 (833)
..++.+++.+.. + ..++.+|.+++..+|.+++.....-. .+++.+++.++..+.+++ .|+..|+.++.++++.
T Consensus 355 --~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~--~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 355 --ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMI--PYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp --GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHG--GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred --HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 456666665532 2 23799999999999999875543211 278999999999998764 5999999999999998
Q ss_pred hhhh-hhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCccc
Q 003289 565 CRKK-LCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQ 643 (833)
Q Consensus 565 ~~~~-l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~ 643 (833)
+... ..+++..++..+.+.+.. -+...|.....+++.++...+.+ ..+++. +++..+..+++...
T Consensus 431 ~~~~~~~~~~~~ll~~L~~~L~d-----~~~~vr~~a~~aL~~l~~~~~~~-l~~~l~----~ll~~L~~~l~~~~---- 496 (852)
T 4fdd_A 431 VVSQPPDTYLKPLMTELLKRILD-----SNKRVQEAACSAFATLEEEACTE-LVPYLA----YILDTLVFAFSKYQ---- 496 (852)
T ss_dssp HHHSCTTTTHHHHHHHHHHHHTC-----SSHHHHHHHHHHHHHHHHHHGGG-GGGGHH----HHHHHHHHHHHHCC----
T ss_pred hccchHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHhhHh-hHhHHH----HHHHHHHHHHHHhC----
Confidence 7653 568999999988887753 24678999999999988765432 334444 44444444544332
Q ss_pred ccCchhhhHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 003289 644 KKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAW-DMRTMESLCRACKYAVRTSKRFMGITIGAILE 722 (833)
Q Consensus 644 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~-~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~ 722 (833)
.+.....+++++.++...+..-...++++.++|.+......... ++++ ..+++++..+...+|..+.|+++.++.
T Consensus 497 ---~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~-~~~~~~l~~i~~~~g~~~~~~~~~i~~ 572 (852)
T 4fdd_A 497 ---HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDL-FPLLECLSSVATALQSGFLPYCEPVYQ 572 (852)
T ss_dssp ---HHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTH-HHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHH-HHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 12233356777777765532222246788999988877665543 4455 478899999998889888888888766
Q ss_pred HHHHHHhhc----------C----------CccHhhhHHHHHHHhcCCcchhHHH--HHHHHHHHHHHHHhhcccccCCc
Q 003289 723 EIQGLYQQH----------Q----------QPCFLYLSSEVIKIFGSDPSCASYL--HNLIEALFKRTTCLLTSIEEFTS 780 (833)
Q Consensus 723 ~l~~~~~~~----------~----------~~~~L~~~~~li~~fg~~~~~~~~~--~~~~~~l~~~~~~~l~~~~~~~~ 780 (833)
.+...++.. + ..+.+++++.++..+|.+ +.+++ ..++. ..+..++ +.
T Consensus 573 ~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~--~~~~~~~~~~~~----~l~~~l~-----~~ 641 (852)
T 4fdd_A 573 RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGN--IEQLVARSNILT----LMYQCMQ-----DK 641 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGG--GHHHHHTCCHHH----HHHHHTT-----CS
T ss_pred HHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHh--HHHHhcCCcHHH----HHHHHhC-----CC
Confidence 544333221 1 134578899999999854 55554 23333 3333343 34
Q ss_pred CCchHHHHHHHHHHHHhhCCCccCCcCCcHHHHHHHHHcccccC
Q 003289 781 RPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQH 824 (833)
Q Consensus 781 ~pd~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~~~~~l~~~~ 824 (833)
.++++++.+.++..+.+.++..+. +++..++......+...+
T Consensus 642 ~~~vr~~a~~~l~~l~~~~~~~~~--~~l~~~lp~l~~~l~~~~ 683 (852)
T 4fdd_A 642 MPEVRQSSFALLGDLTKACFQHVK--PCIADFMPILGTNLNPEF 683 (852)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGTG--GGHHHHHHHHHHTCCTTS
T ss_pred ChhHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHcCccc
Confidence 688999999999999999987764 477788888888885443
No 15
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.58 E-value=1.2e-10 Score=141.73 Aligned_cols=442 Identities=7% Similarity=-0.023 Sum_probs=270.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHcCCchhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHhhcccccccCcccchHHHHH
Q 003289 288 DVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERS 367 (833)
Q Consensus 288 ~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~l~~ll~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~ 367 (833)
.....++.+..++.... ......+++.+...+.+++..+...++..+..+.+.. +
T Consensus 347 ~r~~a~~~L~~l~~~~~------~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~---------~---------- 401 (861)
T 2bpt_A 347 VSMSAGACLQLFAQNCG------NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGP---------D---------- 401 (861)
T ss_dssp HHHHHHHHHHHHHHHHG------GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS---------C----------
T ss_pred HHHHHHHHHHHHHHHcc------HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCC---------C----------
Confidence 33344455555444322 1223456677777777777666666665544332110 0
Q ss_pred HHHHHhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhhcccccCCccchhhhhhhchhHHHHHHHhhcCh----h
Q 003289 368 RRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGG----D 443 (833)
Q Consensus 368 ~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~----~ 443 (833)
...+.+++.+++..++..+.-| + ...|.. +..++..++..+++ .
T Consensus 402 --~~~~~~~l~~il~~l~~~l~d~------~-------~~vr~~-----------------a~~~l~~l~~~~~~~~~~~ 449 (861)
T 2bpt_A 402 --KVQRTYYVHQALPSILNLMNDQ------S-------LQVKET-----------------TAWCIGRIADSVAESIDPQ 449 (861)
T ss_dssp --HHHHHHHHHHHHHHHHHGGGCS------C-------HHHHHH-----------------HHHHHHHHHHHHGGGSCTT
T ss_pred --HHHHHHHHHHHHHHHHHHcCCC------c-------HHHHHH-----------------HHHHHHHHHHHhhhhcCCH
Confidence 0134566777777777655322 1 112333 33444444433332 3
Q ss_pred HHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccC----ccccccHHHHHhhcc----CCCChHHHHHHHHHH
Q 003289 444 ATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVS----VVEAEVMPQVMALLP----KLPQQPQLLQTVCLT 515 (833)
Q Consensus 444 ~~l~~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~----~~~~~~l~~l~~~l~----~l~~~~~v~~t~~~~ 515 (833)
.++..+.+.+...+. . +++...+++++++.+++.+. ..-.++++.++..+. ....++.+|..++.+
T Consensus 450 ~~~~~~l~~l~~~l~-----~-~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~a 523 (861)
T 2bpt_A 450 QHLPGVVQACLIGLQ-----D-HPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSA 523 (861)
T ss_dssp TTHHHHHHHHHHHHT-----S-CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-----c-ChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHH
Confidence 345555555554442 2 27788999999999988875 222456666665542 222357899999999
Q ss_pred HHhchHHHhhCCCChhhHHHHHHHHHhccCC----------------CHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHH
Q 003289 516 IGAYSKWFDAASSDPSILASVLSILTSGMST----------------SEDTAAAAALAFRHICDDCRKKLCGYLDGLYNV 579 (833)
Q Consensus 516 ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~----------------~~~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~ 579 (833)
+|......... ...+++.+++.++..+.. ...++..+..++..+++.++..+.|+++.++..
T Consensus 524 l~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ 601 (861)
T 2bpt_A 524 LTTMVEYATDT--VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGL 601 (861)
T ss_dssp HHHHHHHCCGG--GHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHH
T ss_pred HHHHHHHcchh--hHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99887755432 112444444444433321 113788999999999999999899999999999
Q ss_pred HHHHhcCcCCCCCCH-hhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHH
Q 003289 580 YRTAVNGEGSLKVSA-EDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFA 658 (833)
Q Consensus 580 l~~~l~~~~~~~l~~-~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 658 (833)
+...++.. .. ..+..++.+++.++...+ ++..+++..++..++..+ .... ..-...+++.++
T Consensus 602 l~~~l~~~-----~~~~v~~~~~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l----~~~~-------~~vr~~a~~~l~ 664 (861)
T 2bpt_A 602 FFRLLEKK-----DSAFIEDDVFYAISALAASLG-KGFEKYLETFSPYLLKAL----NQVD-------SPVSITAVGFIA 664 (861)
T ss_dssp HHHHHHST-----TGGGTHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHH----HCTT-------SHHHHHHHHHHH
T ss_pred HHHHHccC-----CCCcHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHh----cccc-------HHHHHHHHHHHH
Confidence 99888753 12 568888899998887754 334567766666555544 2211 111233667777
Q ss_pred HhhhccCCcccHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcC------
Q 003289 659 YIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQ------ 732 (833)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~------ 732 (833)
.+.+.++ ..+.+++..++|.+...+..-..+.++++.++.+++.+...+|..+.|+++.+++.+.......+
T Consensus 665 ~l~~~~~--~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d 742 (861)
T 2bpt_A 665 DISNSLE--EDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLE 742 (861)
T ss_dssp HHHHHTG--GGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHH
T ss_pred HHHHHhc--hhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChH
Confidence 7777654 35667788888888777765334578999999999999999999999999999988877665422
Q ss_pred --------CccHhhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhhcccccCC-c-CCchHHHHHHHHHHHHhhC-CC
Q 003289 733 --------QPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFT-S-RPDVADDCFLLASRCIRYC-PQ 801 (833)
Q Consensus 733 --------~~~~L~~~~~li~~fg~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~-~-~pd~~~~~f~l~~~~~~~~-p~ 801 (833)
-..++..++.++...|.. .+.+...+..++......+. +.+ . +.++++..+..+..+.+.. +.
T Consensus 743 ~~~~~~~vr~~~l~~~~~i~~~l~~~---~~~~~~~~~~i~~~l~~~~~---d~~~~~~~~vr~~a~~~l~~l~~~~~g~ 816 (861)
T 2bpt_A 743 ALDYQIKVLEAVLDAYVGIVAGLHDK---PEALFPYVGTIFQFIAQVAE---DPQLYSEDATSRAAVGLIGDIAAMFPDG 816 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTC---HHHHGGGHHHHHHHHHHHHH---CHHHHTSHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHHHHHHc---CcccCCcHHHHHHHHHHHHHHHHHcCCc
Confidence 136677888888877753 12233333333332222222 111 2 6789999999999999977 33
Q ss_pred ccCCcCCcH-HHHHHHHHccc
Q 003289 802 LFIPSSVFP-SLVDCSMIGIT 821 (833)
Q Consensus 802 ~~~~~~~l~-~~~~~~~~~l~ 821 (833)
.+. +++. .++...+.++.
T Consensus 817 ~~~--~~~~~~~~~~ll~~l~ 835 (861)
T 2bpt_A 817 SIK--QFYGQDWVIDYIKRTR 835 (861)
T ss_dssp TTG--GGTTCHHHHHHHHHHH
T ss_pred hHH--HHHhcHHHHHHHHHHh
Confidence 332 2334 44444444443
No 16
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.50 E-value=3e-10 Score=138.44 Aligned_cols=327 Identities=13% Similarity=0.162 Sum_probs=221.9
Q ss_pred CCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcc-CC-CChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHH
Q 003289 464 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KL-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILT 541 (833)
Q Consensus 464 ~~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~-~l-~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~ 541 (833)
..+|..+.++..++..+++.+.. ..++.+++.+. .+ ..++.+|.+++..+|.++.....+. ...+++.+++.++
T Consensus 339 ~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~-~~~~~~~~l~~l~ 414 (876)
T 1qgr_A 339 DDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ-LKPLVIQAMPTLI 414 (876)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHH-HHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCcH---hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHH
Confidence 45799999999999999988763 35666666553 23 2479999999999999886443100 0126788888888
Q ss_pred hccCCCH-HHHHHHHHHHHHHHHHhhhhh--hcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCC------
Q 003289 542 SGMSTSE-DTAAAAALAFRHICDDCRKKL--CGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP------ 612 (833)
Q Consensus 542 ~~l~~~~-~v~~~A~~al~~l~~~~~~~l--~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~------ 612 (833)
..+.++. .|+.+|+.++.++++.+...+ .++++.++..+...+.. +...+..+..+++.++...+
T Consensus 415 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~------~~~v~~~a~~al~~l~~~~~~~~~~~ 488 (876)
T 1qgr_A 415 ELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA------EPRVASNVCWAFSSLAEAAYEAADVA 488 (876)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS------CHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHHHHhhhccccc
Confidence 8887764 599999999999999987764 58999999998887753 25568888888888876532
Q ss_pred -------hHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHH
Q 003289 613 -------QVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIF 685 (833)
Q Consensus 613 -------~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il 685 (833)
.+...+++ .+++..+.+.+..... +....+ ...+++++.+.+..+ ....+++..++|.+...+
T Consensus 489 ~~~~~~~~~~l~~~~----~~il~~L~~~l~~~~~--~~~~~r--~~~~~~l~~l~~~~~--~~~~~~~~~l~~~l~~~l 558 (876)
T 1qgr_A 489 DDQEEPATYCLSSSF----ELIVQKLLETTDRPDG--HQNNLR--SSAYESLMEIVKNSA--KDCYPAVQKTTLVIMERL 558 (876)
T ss_dssp TSCCCCCCCSSTTTH----HHHHHHHHHHTTSCSS--CSTTHH--HHHHHHHHHHHHTCC--STTHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhHhH----HHHHHHHHHHHhCcCc--chhhHH--HHHHHHHHHHHHHCc--hhhHHHHHHHHHHHHHHH
Confidence 01122343 3444444455443321 111222 336788888877664 345667788888777766
Q ss_pred Hhh--------c-CC----hHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHhhcC-----CccHhhhHHHHHHH
Q 003289 686 DIR--------A-WD----MRTMESLCRACKYAVRTSK-RFMGITIGAILEEIQGLYQQHQ-----QPCFLYLSSEVIKI 746 (833)
Q Consensus 686 ~~~--------~-~~----~~v~e~~~~~~~~~~~~~~-~~~~~~l~~l~~~l~~~~~~~~-----~~~~L~~~~~li~~ 746 (833)
... . .+ +++.+.+|.++..++..+| ..+.|+++.+++.+...++... ....+.+++.++..
T Consensus 559 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~ 638 (876)
T 1qgr_A 559 QQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEV 638 (876)
T ss_dssp HHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHH
Confidence 542 1 22 4567888999999988888 8888999998888877766542 13567788888888
Q ss_pred hcCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCccCCcCCcHHHHHHHHHcccc
Q 003289 747 FGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITV 822 (833)
Q Consensus 747 fg~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~~~~~l~~ 822 (833)
.|.+ +.+++..++..+.. .+.. .+++++....+..+..+++..+..+ .+.+..++...+..+..
T Consensus 639 ~~~~--~~~~~~~~~~~l~~----~l~~----~~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~i~~~l~~~l~~ 702 (876)
T 1qgr_A 639 LGGE--FLKYMEAFKPFLGI----GLKN----YAEYQVCLAAVGLVGDLCRALQSNI--IPFCDEVMQLLLENLGN 702 (876)
T ss_dssp HGGG--GGGGHHHHHHHHHH----HHHH----CTTHHHHHHHHHHHHHHHHHHGGGG--HHHHHHHHHHHHHHHTC
T ss_pred HHhh--HHHHHHHHHHHHHH----HHcC----cchHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHhCC
Confidence 7765 66666665544333 3331 2467899999999999988665444 23566777777777664
No 17
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.25 E-value=4.2e-08 Score=113.44 Aligned_cols=562 Identities=10% Similarity=0.063 Sum_probs=320.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc---ChhHHHHHHHHhcc-CCCchHHHHHHHHHHHHHhhcCCCCCChhh
Q 003289 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQH---TIDAWQVADNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEA 79 (833)
Q Consensus 4 ~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~---s~~aw~~~~~LL~~-~~~~~~vrffaa~~L~~ki~~~w~~l~~~~ 79 (833)
...+..++..+ .++|+..|..|-+.|...-. ....|.-....|.. -+.+.++|..++..|...... +...+
T Consensus 9 ~~~i~~l~~~l-~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~----~~~~~ 83 (588)
T 1b3u_A 9 LYPIAVLIDEL-RNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTL----VGGPE 83 (588)
T ss_dssp SHHHHHHHHHT-TCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGG----GTSGG
T ss_pred cCcHHHHHHHh-hcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhc----cCcHH
Confidence 45577777777 56799999999888876433 22345533333332 234568999998888643321 11111
Q ss_pred HHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhcccc-ccCCccchHHHHHhcCCCC-CcHHHHHHHHhhchhhcc
Q 003289 80 VRGLQDSLNTLLKKFH-KGPPKVRTQISIAVAALAVHISAE-DWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVF 156 (833)
Q Consensus 80 ~~~lr~~Ll~~l~~~~-~~~~~v~~kL~~~la~l~~~~~~~-~Wp~~~~~~~l~~~~~~~~-~~~~~~L~iL~~l~Ee~~ 156 (833)
....++..+.... .....||.+.+.+|..++...++. .|+. +++.+.+...+.. ........++..+.+.+.
T Consensus 84 ---~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~--l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~ 158 (588)
T 1b3u_A 84 ---YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH--FVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS 158 (588)
T ss_dssp ---GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHT--HHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC
T ss_pred ---HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC
Confidence 1223444444332 245789999999999988755431 2433 4444444443321 122344445554433221
Q ss_pred cccccCChhHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHhhccCCCCccccccchhHHHHHhccCCc-
Q 003289 157 NYKIAARPERRRQFEKELTSQMEVALSTLTACLHI--NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE- 233 (833)
Q Consensus 157 ~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~--~~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~~~~L~~~- 233 (833)
.. ..+.+++++...+.+ +.++..+++++..+... .+.+ .....+++.+...++++
T Consensus 159 -------~~-----------~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~---~~~~-~~~~~l~~~l~~~~~d~~ 216 (588)
T 1b3u_A 159 -------SA-----------VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKV---LELD-NVKSEIIPMFSNLASDEQ 216 (588)
T ss_dssp -------HH-----------HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHT---SCHH-HHHHTHHHHHHHHHTCSC
T ss_pred -------HH-----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH---hcHH-hHHHHHHHHHHHHhcCCc
Confidence 11 123455555555544 46889999999888774 2221 11245777777777664
Q ss_pred -chHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHHHHcCCc
Q 003289 234 -ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSD 312 (833)
Q Consensus 234 -~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~~~~~~~l~~~~~ 312 (833)
..+..|++++..+...... ......++|.+..+ + .+.+....+..++.+..++.....-.
T Consensus 217 ~~vr~~a~~~l~~l~~~~~~---------~~~~~~~~~~l~~~---~--~d~~~~vR~~a~~~l~~l~~~~~~~~----- 277 (588)
T 1b3u_A 217 DSVRLLAVEACVNIAQLLPQ---------EDLEALVMPTLRQA---A--EDKSWRVRYMVADKFTELQKAVGPEI----- 277 (588)
T ss_dssp HHHHTTHHHHHHHHHHHSCH---------HHHHHHTHHHHHHH---H--TCSSHHHHHHHHHTHHHHHHHHCHHH-----
T ss_pred HHHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHH---c--cCCCHHHHHHHHHHHHHHHHHhCccc-----
Confidence 5788899999888764321 11222233332221 1 23444445556666666554321100
Q ss_pred hhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHhhcccccccCcccchHHHHHHHHHHhHHHHHHHHHHHHhhccCCC
Q 003289 313 ESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQ 392 (833)
Q Consensus 313 ~~~~~l~~ll~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~ 392 (833)
....+++.++.++..++.++...+...+..+.+.+.. + . +. .+++..+++.+...+ .
T Consensus 278 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---------~-~----~~------~~~~~~l~p~l~~~l---~ 334 (588)
T 1b3u_A 278 TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA---------D-C----RE------NVIMSQILPCIKELV---S 334 (588)
T ss_dssp HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT---------T-T----HH------HHHHHTHHHHHHHHH---T
T ss_pred chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCh---------h-h----hh------hHHHHHHHHHHHHHh---c
Confidence 1234567777777888888888888887776654321 0 0 00 012222222222211 1
Q ss_pred CCCCCChhhhHHhHhhhhcccccCCccchhhhhhhchhHHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhH
Q 003289 393 DYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEA 472 (833)
Q Consensus 393 d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea 472 (833)
| .. ...|.. +...+..++..+|.+.....+...+...+. ..++.-+++
T Consensus 335 d-~~---------~~vR~~-----------------a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~-----d~~~~Vr~~ 382 (588)
T 1b3u_A 335 D-AN---------QHVKSA-----------------LASVIMGLSPILGKDNTIEHLLPLFLAQLK-----DECPEVRLN 382 (588)
T ss_dssp C-SC---------HHHHHH-----------------HHTTGGGGHHHHCHHHHHHHTHHHHHHHHT-----CSCHHHHHH
T ss_pred C-CC---------HHHHHH-----------------HHHHHHHHHHHhhHhHHHHHHHHHHHHHhC-----CCchHHHHH
Confidence 1 00 123544 556666666666755444555555555442 345777888
Q ss_pred HHHHHHHhhcccCccc--cccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCH-H
Q 003289 473 ALFCIRAISTYVSVVE--AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-D 549 (833)
Q Consensus 473 al~~l~~i~e~~~~~~--~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~ 549 (833)
++.+++.+.+.+..+. ...++.+...+.. .+..+|.+++..++.++..+.... +.+.+++.+...+.++. .
T Consensus 383 a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~ 456 (588)
T 1b3u_A 383 IISNLDCVNEVIGIRQLSQSLLPAIVELAED--AKWRVRLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVDHVYA 456 (588)
T ss_dssp HHTTCHHHHHHSCHHHHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHCGGG----CCHHHHHHHHHGGGCSSHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHcCHHH----HHHHHHHHHHHHhcCCcHH
Confidence 9989888887765431 2344555544322 368999999999999988776532 34567777777787663 5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHH
Q 003289 550 TAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVT 629 (833)
Q Consensus 550 v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~ 629 (833)
|+..|+.++..++...+... +.+.++..+..+... -+...|...+++++.+...++.+ .+...++.+
T Consensus 457 Vr~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~-----~~~~~R~~a~~~l~~l~~~~~~~---~~~~~~~~~--- 523 (588)
T 1b3u_A 457 IREAATSNLKKLVEKFGKEW--AHATIIPKVLAMSGD-----PNYLHRMTTLFCINVLSEVCGQD---ITTKHMLPT--- 523 (588)
T ss_dssp HHHHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTC-----SCHHHHHHHHHHHHHHHHHHHHH---HHHHHTHHH---
T ss_pred HHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHHhcCHH---HHHHHHHHH---
Confidence 99999999999998876542 244555555554432 24578888999999887765432 233333333
Q ss_pred HHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 003289 630 PLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKY 704 (833)
Q Consensus 630 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~ 704 (833)
+.+.+.... ...| ...+.+++.+.+..+ ++. .-+.+.|.+..++. ..|.+|++.++.++..
T Consensus 524 -l~~~l~d~~-----~~Vr--~~a~~~l~~l~~~~~-~~~---~~~~~~p~l~~l~~--d~d~~vr~~a~~al~~ 584 (588)
T 1b3u_A 524 -VLRMAGDPV-----ANVR--FNVAKSLQKIGPILD-NST---LQSEVKPILEKLTQ--DQDVDVKYFAQEALTV 584 (588)
T ss_dssp -HHHGGGCSC-----HHHH--HHHHHHHHHHGGGSC-HHH---HHHHHHHHHHHHTT--CSSHHHHHHHHHHHHH
T ss_pred -HHhhCCCCC-----chHH--HHHHHHHHHHHHHhc-hhh---hHHHHHHHHHHHcC--CCchhHHHHHHHHHHH
Confidence 333333221 1122 236677777776553 211 12567777777432 4678999998888764
No 18
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.24 E-value=5.3e-09 Score=132.07 Aligned_cols=531 Identities=10% Similarity=0.081 Sum_probs=303.7
Q ss_pred HHHHHHHHHHHHHhhccCCCCccccccchhHHHHHhccCC--cchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHH
Q 003289 193 ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHS--EILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVP 270 (833)
Q Consensus 193 ~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~~~~L~~--~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~ 270 (833)
+++..+.+-+...+... ....+.-....++..+++.|.+ ++.+..|+.++..++.... . +.+..+++
T Consensus 21 ~~R~~A~~~L~~~l~~~-~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~--------~--~~~~~i~~ 89 (1230)
T 1u6g_C 21 DFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK--------E--YQVETIVD 89 (1230)
T ss_dssp HHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC--------H--HHHHHHHH
T ss_pred hHHHHHHHHHHHHHccc-ccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCC--------H--HHHHHHHH
Confidence 56666666665544321 0111101123577778888865 4678999999999886331 1 23333444
Q ss_pred HHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHHHHcC---CchhHHHHHHHHhhhc-CCCcchhhhhHHHHHHHHHH
Q 003289 271 QIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATG---SDESMLIVHALLEVAS-HPEYDIASMTFNFWHSLQVI 346 (833)
Q Consensus 271 ~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~~~~~~~l~~~---~~~~~~~l~~ll~~~~-~~~~~v~~~~l~fw~~l~~~ 346 (833)
.+. ..+. +.++......+..+..++......-... ......++..++..+. .++..+...++..|..+.+.
T Consensus 90 ~Ll---~~l~--d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 90 TLC---TNML--SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHH---HHTT--CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHH---HHhc--CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 332 1221 2333333344444444433211100000 0135577888888877 47778889999998887764
Q ss_pred HhhcccccccCcccchHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhhcccccCCccchhhhhh
Q 003289 347 LTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVML 426 (833)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~ 426 (833)
... .+.|++.+++..++..+.-|+ ...|..
T Consensus 165 ~~~----------------------~l~~~~~~ll~~l~~~L~~~~-------------~~vR~~--------------- 194 (1230)
T 1u6g_C 165 QGG----------------------LLVNFHPSILTCLLPQLTSPR-------------LAVRKR--------------- 194 (1230)
T ss_dssp TCS----------------------SCTTTHHHHHHHHGGGGGCSS-------------HHHHHH---------------
T ss_pred hHh----------------------HHHHHHHHHHHHHHHHHcCCc-------------HHHHHH---------------
Confidence 311 122344566666665443211 124555
Q ss_pred hchhHHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhccC-C-CC
Q 003289 427 IAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-L-PQ 504 (833)
Q Consensus 427 ~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~~-l-~~ 504 (833)
+...+..+....+. .++..+.+.+.+.+.. ..++..+..++-+++.+++.++..-.++++.+++.+.+ + ..
T Consensus 195 --a~~al~~l~~~~~~-~~~~~~l~~l~~~L~~----~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~ 267 (1230)
T 1u6g_C 195 --TIIALGHLVMSCGN-IVFVDLIEHLLSELSK----NDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVD 267 (1230)
T ss_dssp --HHHHHHHHTTTC-----CTTHHHHHHHHHHH----TCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSC
T ss_pred --HHHHHHHHHHhcCH-HHHHHHHHHHHHHhcc----CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC
Confidence 55666666655552 2333333333333322 12256677889999999887764333444555544321 1 23
Q ss_pred hHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCC-C------------------------------------
Q 003289 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST-S------------------------------------ 547 (833)
Q Consensus 505 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~-~------------------------------------ 547 (833)
++.+|..++.+++.+++..... ...+++.+++.++..+.. +
T Consensus 268 ~~~vR~~a~~~l~~l~~~~~~~--~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 345 (1230)
T 1u6g_C 268 DDELREYCIQAFESFVRRCPKE--VYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDM 345 (1230)
T ss_dssp CTTTHHHHHHHHHHHHHCTTCC--CHHHHHHHHHHHTTCCCCC------------------------------------C
T ss_pred CHHHHHHHHHHHHHHHHHChHH--HHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhccccccccccc
Confidence 6779999999999887754332 124788888888766531 0
Q ss_pred -HHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChH------------
Q 003289 548 -EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV------------ 614 (833)
Q Consensus 548 -~~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~------------ 614 (833)
.+++..|+.++..++...++.+.++++.++..+...+.. -..+.|..++++++.++......
T Consensus 346 ~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d-----~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 420 (1230)
T 1u6g_C 346 SWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKE-----REENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQ 420 (1230)
T ss_dssp TTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSC-----SSSHHHHHHHHHHHHHHHHHCCC------------
T ss_pred CHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCC-----CchHHHHHHHHHHHHHHHHhccccccccCcccccc
Confidence 036888999999998754444556666666554443321 23567888999998888754320
Q ss_pred --HHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHhhcCCh
Q 003289 615 --DAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDM 692 (833)
Q Consensus 615 --~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~ 692 (833)
.....+..++..++..+.+.+.... .+....++..++.+...+. ..+.+++.+++|.+...+.....+.
T Consensus 421 ~~~~~~~~~~~l~~ll~~l~~~l~~~~-------~~vr~~~~~~L~~l~~~~~--~~l~~~l~~ll~~l~~~L~d~~~~~ 491 (1230)
T 1u6g_C 421 GETPLTMLQSQVPNIVKALHKQMKEKS-------VKTRQCCFNMLTELVNVLP--GALTQHIPVLVPGIIFSLNDKSSSS 491 (1230)
T ss_dssp CCCHHHHHHHHTTHHHHHHHHHTTCSC-------HHHHHHHHHHHHHHHHHST--TTTGGGHHHHHHHHHHHTTCSSSCH
T ss_pred ccchHHHHHHHhhHHHHHHHHHhccCC-------HHHHHHHHHHHHHHHHHch--hhhHHHHHHHHHHHHHHHcCCCCcc
Confidence 1123455666666666665554321 1111235566666666542 2233466788888877776533345
Q ss_pred HHHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHhhcCC---ccHhhhHHHHHHHhcC-----CcchhHHHHHHHHH
Q 003289 693 RTMESLCRACKYAVRTSKRF-MGITIGAILEEIQGLYQQHQQ---PCFLYLSSEVIKIFGS-----DPSCASYLHNLIEA 763 (833)
Q Consensus 693 ~v~e~~~~~~~~~~~~~~~~-~~~~l~~l~~~l~~~~~~~~~---~~~L~~~~~li~~fg~-----~~~~~~~~~~~~~~ 763 (833)
++.+.++..+...+...|+. +.|+++.+++.+...++.... ...+..++.++..+|. ...+.+++..++..
T Consensus 492 ~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ 571 (1230)
T 1u6g_C 492 NLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTC 571 (1230)
T ss_dssp HHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHH
Confidence 88888999998887765554 556666666666555544221 2457788888988886 22366676666665
Q ss_pred HHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCccCCcCCcHHHHHHHHHccc
Q 003289 764 LFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGIT 821 (833)
Q Consensus 764 l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~~~~~l~ 821 (833)
++. .+. ..+.++++.......++.++.+.+..+. +.+..+++.....+.
T Consensus 572 ll~----~l~---~~d~~~~vr~~a~~~lg~L~~~~g~~~~--~~~~~~l~~L~~~l~ 620 (1230)
T 1u6g_C 572 TIK----RLK---AADIDQEVKERAISCMGQIICNLGDNLG--SDLPNTLQIFLERLK 620 (1230)
T ss_dssp HHH----HHS---CSSSCHHHHHHHHHHHHHHHHHTGGGCC--THHHHHHHHHHHHTT
T ss_pred HHH----HHh---ccCCCHHHHHHHHHHHHHHHHHhCchhh--hhHHHHHHHHHHHhc
Confidence 544 343 1356778888888888888887765553 355556665555544
No 19
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.11 E-value=5.1e-08 Score=112.75 Aligned_cols=481 Identities=12% Similarity=0.095 Sum_probs=278.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-h--hHHH----HHHHHhccCCCchHHHHHHHHHHHHHhhcCCCCCChhh
Q 003289 7 VKEALNALYHHPDDAVRMQADRWLQDFQHT-I--DAWQ----VADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEA 79 (833)
Q Consensus 7 v~~al~~ly~~~d~~~r~~A~~~L~~~q~s-~--~aw~----~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~l~~~~ 79 (833)
+..++..+....++..|+.|-+.|..+-.. + ..+. +...+.. +.+..+|..|+.++..... .++...
T Consensus 88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~--~~~~~~R~~a~~~l~~~~~----~~~~~~ 161 (588)
T 1b3u_A 88 LLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAG--GDWFTSRTSACGLFSVCYP----RVSSAV 161 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHT--CSSHHHHHHHGGGHHHHTT----TSCHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHH----hcCHHH
Confidence 444455554567788899998888876553 1 1232 2333433 3466788888888876543 244443
Q ss_pred HHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhcccccc-CCccchHHHHHhcCCCC-CcHHHHHHHHhhchhhcc
Q 003289 80 VRGLQDSLNTLLKKFH-KGPPKVRTQISIAVAALAVHISAEDW-GGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVF 156 (833)
Q Consensus 80 ~~~lr~~Ll~~l~~~~-~~~~~v~~kL~~~la~l~~~~~~~~W-p~~~~~~~l~~~~~~~~-~~~~~~L~iL~~l~Ee~~ 156 (833)
++.++..+.... .....||...+.+++.++...+++.| +. +++.+...++... ......+..|..+.+.+.
T Consensus 162 ----~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~--l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~ 235 (588)
T 1b3u_A 162 ----KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE--IIPMFSNLASDEQDSVRLLAVEACVNIAQLLP 235 (588)
T ss_dssp ----HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHT--HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSC
T ss_pred ----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHH--HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCC
Confidence 444444444432 24678999999999998876553333 44 6777766665432 233445566665554332
Q ss_pred cccccCChhHHHHHHHHHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHHHhhccCCCCccccccchhHHHHHhccCCc-
Q 003289 157 NYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN--ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE- 233 (833)
Q Consensus 157 ~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~--~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~~~~L~~~- 233 (833)
. . ...+.+++++...++++ .++..+.+++....... +.+ .....+++.+...++++
T Consensus 236 ~-------~----------~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~---~~~-~~~~~l~~~l~~~l~d~~ 294 (588)
T 1b3u_A 236 Q-------E----------DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAV---GPE-ITKTDLVPAFQNLMKDCE 294 (588)
T ss_dssp H-------H----------HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHH---CHH-HHHHTHHHHHHHHHTCSS
T ss_pred H-------H----------HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh---Ccc-cchhHHHHHHHHHhCCCc
Confidence 1 0 11234555555555543 57888888887766531 111 11235677777777764
Q ss_pred -chHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHHHHcCCc
Q 003289 234 -ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSD 312 (833)
Q Consensus 234 -~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~~~~~~~l~~~~~ 312 (833)
+++..|+.++..+....... . .....+..++|.+..+ + .+.+....+..+..+..++.....-.
T Consensus 295 ~~vr~~a~~~l~~~~~~~~~~----~-~~~~~~~~l~p~l~~~---l--~d~~~~vR~~a~~~l~~l~~~~~~~~----- 359 (588)
T 1b3u_A 295 AEVRAAASHKVKEFCENLSAD----C-RENVIMSQILPCIKEL---V--SDANQHVKSALASVIMGLSPILGKDN----- 359 (588)
T ss_dssp HHHHHHHHHHHHHHHHTSCTT----T-HHHHHHHTHHHHHHHH---H--TCSCHHHHHHHHTTGGGGHHHHCHHH-----
T ss_pred HHHHHHHHHHHHHHHHHhChh----h-hhhHHHHHHHHHHHHH---h--cCCCHHHHHHHHHHHHHHHHHhhHhH-----
Confidence 67899999999988644210 0 0012333444443221 1 23444444455555544443221100
Q ss_pred hhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHhhcccccccCcccchHHHHHHHHHHhHHHHHHHHHHHHhhccCCC
Q 003289 313 ESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQ 392 (833)
Q Consensus 313 ~~~~~l~~ll~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~ 392 (833)
....++..++.++..++.+|...++..+..+.+.+.. .... ..+++.+..-+ .
T Consensus 360 ~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-----------------~~~~-------~~~lp~l~~~~---~ 412 (588)
T 1b3u_A 360 TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI-----------------RQLS-------QSLLPAIVELA---E 412 (588)
T ss_dssp HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH-----------------HHHH-------HHHHHHHHHHH---T
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH-----------------HHHH-------HHHHHHHHHHh---c
Confidence 1224556667777777778888887776666543210 0111 12222222111 1
Q ss_pred CCCCCChhhhHHhHhhhhcccccCCccchhhhhhhchhHHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhH
Q 003289 393 DYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEA 472 (833)
Q Consensus 393 d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea 472 (833)
| ..| ..|.. +.+.+..+...+|++.+.+.+...+...+. ..+|.-+++
T Consensus 413 d-~~~---------~vr~~-----------------~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-----d~~~~Vr~~ 460 (588)
T 1b3u_A 413 D-AKW---------RVRLA-----------------IIEYMPLLAGQLGVEFFDEKLNSLCMAWLV-----DHVYAIREA 460 (588)
T ss_dssp C-SSH---------HHHHH-----------------HHHHHHHHHHHHCGGGCCHHHHHHHHHGGG-----CSSHHHHHH
T ss_pred C-CCc---------hHHHH-----------------HHHHHHHHHHHcCHHHHHHHHHHHHHHHhc-----CCcHHHHHH
Confidence 1 111 23444 667777777777754333344555544432 457888999
Q ss_pred HHHHHHHhhcccCccc--cccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCH-H
Q 003289 473 ALFCIRAISTYVSVVE--AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-D 549 (833)
Q Consensus 473 al~~l~~i~e~~~~~~--~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~ 549 (833)
++.+++.+++.+..+. +..++.+...+. ..+..+|.+++.++|.+++.+.... +++.+++.+...++++. .
T Consensus 461 a~~~l~~l~~~~~~~~~~~~llp~l~~~~~--~~~~~~R~~a~~~l~~l~~~~~~~~----~~~~~~~~l~~~l~d~~~~ 534 (588)
T 1b3u_A 461 ATSNLKKLVEKFGKEWAHATIIPKVLAMSG--DPNYLHRMTTLFCINVLSEVCGQDI----TTKHMLPTVLRMAGDPVAN 534 (588)
T ss_dssp HHHHHHHHHHHHCHHHHHHHTHHHHHHTTT--CSCHHHHHHHHHHHHHHHHHHHHHH----HHHHTHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHhhCCCCCch
Confidence 9999999998876431 233444433221 2368999999999999998877542 67888888888887753 4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHH
Q 003289 550 TAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (833)
Q Consensus 550 v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~v 607 (833)
|+..++.++.+++...+....+ +.++..+..+.+. -+.+.|....++++.+
T Consensus 535 Vr~~a~~~l~~l~~~~~~~~~~--~~~~p~l~~l~~d-----~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 535 VRFNVAKSLQKIGPILDNSTLQ--SEVKPILEKLTQD-----QDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHHGGGSCHHHHH--HHHHHHHHHHTTC-----SSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhchhhhH--HHHHHHHHHHcCC-----CchhHHHHHHHHHHHh
Confidence 9999999999999766544321 3455555555432 3467888888888754
No 20
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=98.45 E-value=2.4e-06 Score=86.95 Aligned_cols=114 Identities=17% Similarity=0.303 Sum_probs=101.8
Q ss_pred hhhHHHHHHHHHHHHhhc----CCccHhhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHH
Q 003289 714 GITIGAILEEIQGLYQQH----QQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCF 789 (833)
Q Consensus 714 ~~~l~~l~~~l~~~~~~~----~~~~~L~~~~~li~~fg~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~pd~~~~~f 789 (833)
..++|++++.++.+|+++ +.+..|++.+.+|.+.|+. +.+.+..+++.++++|+.++. .++.++||.+.+||
T Consensus 68 ~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~--i~~~vp~Il~~VFe~TL~MI~--~df~eyPehR~~Ff 143 (321)
T 1w9c_A 68 ENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGH--ITAEIPQIFDAVFECTLNMIN--KDFEEYPEHRTNFF 143 (321)
T ss_dssp HHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGG--GGGGHHHHHHHHHHHHHHHHS--STTTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHh--cccccChHHHHHHH
Confidence 567899999999999874 3589999999999999976 888999999999999999998 57899999999999
Q ss_pred HHHHHHHhhCCCccCC--cCCcHHHHHHHHHcccccCchhhhhh
Q 003289 790 LLASRCIRYCPQLFIP--SSVFPSLVDCSMIGITVQHRRRILIC 831 (833)
Q Consensus 790 ~l~~~~~~~~p~~~~~--~~~l~~~~~~~~~~l~~~~~~~~~~~ 831 (833)
.|+..+..+|+..++. ++.+..++++.+||+...+|+.+-++
T Consensus 144 ~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~g 187 (321)
T 1w9c_A 144 LLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTG 187 (321)
T ss_dssp HHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHH
Confidence 9999999999998774 56699999999999999999876543
No 21
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.33 E-value=1.3e-05 Score=89.19 Aligned_cols=269 Identities=11% Similarity=0.060 Sum_probs=156.7
Q ss_pred CcchhhHHHHHHHHhhcccCcc-ccccHHHHHhhcc---CCCC-hHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHH
Q 003289 466 EWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLP---KLPQ-QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 540 (833)
Q Consensus 466 ~w~~~Eaal~~l~~i~e~~~~~-~~~~l~~l~~~l~---~l~~-~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l 540 (833)
++..+|+++.+++.+.+..... ...+++.+++.+. +-+. ++.||..++.+++.+..++..+.......+.+++.+
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l 222 (462)
T 1ibr_B 143 TEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVV 222 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 7889999999999999876322 2344555555432 1122 689999999999987666554322111122245555
Q ss_pred HhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHH-HHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCCh-----
Q 003289 541 TSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLD-GLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ----- 613 (833)
Q Consensus 541 ~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~-~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~----- 613 (833)
...+.++. .++..++.+|..+++.+.+.+.++++ .+++.+...+.. .+.+.+...++.++.+......
T Consensus 223 ~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~v~~~a~~~l~~~~~~~~~~~~~~ 297 (462)
T 1ibr_B 223 CEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS-----DIDEVALQGIEFWSNVCDEEMDLAIEA 297 (462)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHC-----SSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55554432 59999999999999999888889988 888877766643 3466788888887777654200
Q ss_pred -----------HHHHHHHHHhhhhhHHHHHHHHhcCCCc--ccccCchhhhHHHHHHHHhhhccCCcccHHHHHHHHHHH
Q 003289 614 -----------VDAKKALEMLCLPVVTPLQEIINQGPEI--LQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPI 680 (833)
Q Consensus 614 -----------~~~~~~l~~l~~p~~~~l~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 680 (833)
.....++...+..++..+-+.+...... +++...+. .+.++++.+....+ +. ++..++|.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~--~a~~~L~~l~~~~~--~~---~~~~~~~~ 370 (462)
T 1ibr_B 298 SEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCK--AAGVCLMLLATCCE--DD---IVPHVLPF 370 (462)
T ss_dssp CCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHH--HHHHHHHHHHHHTT--TT---HHHHHHHH
T ss_pred ccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHH--HHHHHHHHHHHhcc--HH---HHHHHHHH
Confidence 0000112222233333333344332211 11112222 24455555555442 22 33456666
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHhhcCC----ccHhhhHHHHHHHhcC
Q 003289 681 FKAIFDIRAWDMRTMESLCRACKYAVRTSK-RFMGITIGAILEEIQGLYQQHQQ----PCFLYLSSEVIKIFGS 749 (833)
Q Consensus 681 l~~il~~~~~~~~v~e~~~~~~~~~~~~~~-~~~~~~l~~l~~~l~~~~~~~~~----~~~L~~~~~li~~fg~ 749 (833)
+...+. ..+..++++++.+++.+..... ..+.++++.+++.+...+.. +. ....+.++.+...++.
T Consensus 371 l~~~l~--~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d-~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 371 IKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp HHHHTT--CSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHhc--CCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhccc
Confidence 665554 3567899999999998765443 23445555555555554432 22 2445666777776665
No 22
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.28 E-value=4.5e-06 Score=84.26 Aligned_cols=184 Identities=10% Similarity=0.149 Sum_probs=130.8
Q ss_pred CCCcchhhHHHHHHHH-hhcccCccc--cccHHHHHhhcc-CC--CChHHHHHHHHHHHHhchHHHh-hCCCCh-hhHHH
Q 003289 464 HNEWRPAEAALFCIRA-ISTYVSVVE--AEVMPQVMALLP-KL--PQQPQLLQTVCLTIGAYSKWFD-AASSDP-SILAS 535 (833)
Q Consensus 464 ~~~w~~~Eaal~~l~~-i~e~~~~~~--~~~l~~l~~~l~-~l--~~~~~v~~t~~~~ig~y~~~l~-~~p~~~-~~l~~ 535 (833)
+.+|.++-+++-.++. +.++++.-. ..-...+++.+. .+ ..|+.|+..++.++|.+++-+. .. .. .|...
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~--f~~~y~~~ 104 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG--FSKDYVSL 104 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT--SCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc--ccHHHHHH
Confidence 6789999999999999 886654321 222234444432 22 2489999999999999998886 33 33 48889
Q ss_pred HHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhh-cCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCCh
Q 003289 536 VLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLC-GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ 613 (833)
Q Consensus 536 ~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~-~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~ 613 (833)
+++.++..+.+.. .|+.+|..|+..+++.+.+... ++++.+++.+...+..+ ....|...+..++.++...+.
T Consensus 105 llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-----~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 105 VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-----TPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-----SHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-----ChHHHHHHHHHHHHHHHHcCC
Confidence 9999998888753 4999999999999998866332 44999999998888652 467899999999999988664
Q ss_pred --HHHHHHHHHhh-hhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccC
Q 003289 614 --VDAKKALEMLC-LPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN 665 (833)
Q Consensus 614 --~~~~~~l~~l~-~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 665 (833)
+...+ .+ .+++..+.+++.... ...|.. +.++++.+.+.++
T Consensus 180 ~~~~l~~----~l~~~iip~l~~~l~D~~-----~~VR~a--A~~~l~~i~~~vG 223 (249)
T 2qk1_A 180 GYSTLQR----YLKDEVVPIVIQIVNDTQ-----PAIRTI--GFESFAILIKIFG 223 (249)
T ss_dssp CSHHHHH----HHTTTHHHHHHHHHTCSS-----HHHHHH--HHHHHHHHHHHHC
T ss_pred cchhHHH----HHHHHHHHHHHHHhcCCC-----HHHHHH--HHHHHHHHHHHhC
Confidence 33334 44 455555566664332 123443 7788888877764
No 23
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.28 E-value=0.00039 Score=79.88 Aligned_cols=462 Identities=12% Similarity=0.119 Sum_probs=232.2
Q ss_pred hcCCCHHHHHHHHHHHHHHhc-ChhHHHH-HHHHhcc-CCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHH
Q 003289 15 YHHPDDAVRMQADRWLQDFQH-TIDAWQV-ADNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLL 91 (833)
Q Consensus 15 y~~~d~~~r~~A~~~L~~~q~-s~~aw~~-~~~LL~~-~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l 91 (833)
..++|.+.|+-+.-++..+-+ .|+.-.. +..+..+ .+.++.+|-.|..+|-+.. .++-...+-..+...+
T Consensus 58 ~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-------~~~~~~~l~~~l~~~L 130 (591)
T 2vgl_B 58 MQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR-------VDKITEYLCEPLRKCL 130 (591)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-------SGGGHHHHHHHHHHHS
T ss_pred hCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHc
Confidence 355677777777777776544 4544222 2233221 2356677777766665432 3333334444444433
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-CCcHHHHHHHHhhchhhcccc-cccCChhHHHH
Q 003289 92 KKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-PEFVPGFLELLTVLPEEVFNY-KIAARPERRRQ 169 (833)
Q Consensus 92 ~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~~-~~~~~~~L~iL~~l~Ee~~~~-~~~~~~~~r~~ 169 (833)
. ..+++||++-+.++..++... |+.+++.++++.+.+.++.. +......+..|..+.++-... ...+.
T Consensus 131 ~---d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~------ 200 (591)
T 2vgl_B 131 K---DEDPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLN------ 200 (591)
T ss_dssp S---CSCHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCH------
T ss_pred C---CCChHHHHHHHHHHHHHHhhC-hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhcc------
Confidence 3 256899999999999888744 35565322667777777642 234456677777666543211 11110
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhccCCCCccccccchhHHHHHhccCC--cchHHHHHHHHHHHH
Q 003289 170 FEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHS--EILSEASVNVISELI 247 (833)
Q Consensus 170 l~~~l~~~~~~vl~~l~~~l~~~~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~~~~L~~--~~~~~~a~~~l~~ii 247 (833)
....+.++..+... ++-.+..+++++..+.. .+.-....+++.+...+++ +.+...|+.++..+.
T Consensus 201 -----~~~~~~Ll~~l~~~--~~~~q~~il~~l~~l~~------~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~ 267 (591)
T 2vgl_B 201 -----PQNINKLLTALNEC--TEWGQIFILDCLSNYNP------KDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFL 267 (591)
T ss_dssp -----HHHHHHHHHHHHHC--CHHHHHHHHHHHHTSCC------CSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSC
T ss_pred -----HHHHHHHHHcCCCC--CchHHHHHHHHHHHhCC------CChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 11122222222211 12234455555532221 1111124577777777764 456677777777665
Q ss_pred hhhccCCCCCCCCchhHHHHHHHHHHh-hHHHhhhccCCHHHHHHHHHHHHHHhhHHHHHHHcCCchhHHHHHHHHhhhc
Q 003289 248 HYSAAGSSGGATVNMPLIQVIVPQIMS-LKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVAS 326 (833)
Q Consensus 248 ~~~~~~~~~~~~~~~~~i~~l~~~~~~-l~~~l~~~~~d~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~l~~ll~~~~ 326 (833)
..... ..+.++.+.+.+.. +. .+. +.|.+......+.+..++..+ |+.+...+..++ +..
T Consensus 268 ~~~~~--------~~~~~~~~~~~~~~~L~-~L~--~~d~~vr~~aL~~l~~i~~~~-------p~~~~~~~~~~~-~~~ 328 (591)
T 2vgl_B 268 ELLPK--------DSDYYNMLLKKLAPPLV-TLL--SGEPEVQYVALRNINLIVQKR-------PEILKQEIKVFF-VKY 328 (591)
T ss_dssp CSCCB--------TTBSHHHHHHHTHHHHH-HHT--TSCHHHHHHHHHHHHHHHHHC-------CSTTTTCTTTTS-CCT
T ss_pred hccCC--------CHHHHHHHHHHHHHHHH-HHh--cCCccHHHHHHHHHHHHHHhC-------hHHHHHHHHhhe-ecc
Confidence 32100 01122222222111 11 122 234443323333344433322 221111111111 222
Q ss_pred CCCcchhhhhHHHHHHHHHHHhhcccccccCcccchHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhH
Q 003289 327 HPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFK 406 (833)
Q Consensus 327 ~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~ 406 (833)
+.+..|...+++.|..+.. + . .... ++..+...+ .+. | .
T Consensus 329 ~d~~~Ir~~al~~L~~l~~-------------~-------~----nv~~----iv~~L~~~l---~~~---d-------~ 367 (591)
T 2vgl_B 329 NDPIYVKLEKLDIMIRLAS-------------Q-------A----NIAQ----VLAELKEYA---TEV---D-------V 367 (591)
T ss_dssp TSCHHHHHHHHHHHHHTCC-------------S-------S----THHH----HHHHHHHHT---TSS---C-------H
T ss_pred CChHHHHHHHHHHHHHHCC-------------h-------h----hHHH----HHHHHHHHH---hcC---C-------H
Confidence 3336677788887665431 0 0 0112 232222211 110 1 1
Q ss_pred hhhhcccccCCccchhhhhhhchhHHHHHHHhhcCh--hHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhccc
Q 003289 407 HTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGG--DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYV 484 (833)
Q Consensus 407 ~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~--~~~l~~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~ 484 (833)
++|+. +...+..++...++ +.++..+.+.+.. ..+|-..|+ +.++..+....
T Consensus 368 ~~r~~-----------------~v~aI~~la~~~~~~~~~~v~~Ll~ll~~--------~~~~v~~e~-i~~l~~ii~~~ 421 (591)
T 2vgl_B 368 DFVRK-----------------AVRAIGRCAIKVEQSAERCVSTLLDLIQT--------KVNYVVQEA-IVVIRDIFRKY 421 (591)
T ss_dssp HHHHH-----------------HHHHHHHHHTTCHHHHHHHHHHHHHHHHT--------CCHHHHHHH-HHHHHHHHHHS
T ss_pred HHHHH-----------------HHHHHHHHHHhChhHHHHHHHHHHHHHcc--------cchHHHHHH-HHHHHHHHHHC
Confidence 36666 55566665544432 3444544444431 345555555 55777777665
Q ss_pred CccccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHH
Q 003289 485 SVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMS-TSEDTAAAAALAFRHICD 563 (833)
Q Consensus 485 ~~~~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~-~~~~v~~~A~~al~~l~~ 563 (833)
+......+..+.+.+.... +|.++.+++|++|.|++++.. .+.++..+...+. .+..|+..+..|+.++..
T Consensus 422 p~~~~~~v~~L~~~l~~~~-~~~~~~~~~wilGey~~~~~~-------~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~ 493 (591)
T 2vgl_B 422 PNKYESIIATLCENLDSLD-EPDARAAMIWIVGEYAERIDN-------ADELLESFLEGFHDESTQVQLTLLTAIVKLFL 493 (591)
T ss_dssp CSSCCTTHHHHHHTTTTCC-SHHHHHHHHHHHHTTCTTCTT-------HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHcccccccC-------HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence 5444556777777665443 688899999999999987753 3455666665543 344599999999999986
Q ss_pred HhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHH
Q 003289 564 DCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (833)
Q Consensus 564 ~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~v 607 (833)
.+.... ...+..+.+.... + ..+.+.|.+.++..+.+
T Consensus 494 ~~p~~~----~~~i~~ll~~~~~-d--~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 494 KKPSET----QELVQQVLSLATQ-D--SDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp TCCSTT----HHHHHHHHHHHHT-T--CCCHHHHHHHHHHHTTT
T ss_pred cCchHH----HHHHHHHHHHhhh-c--CCChHHHHHHHHHHHHH
Confidence 554322 1223222222211 0 24567888888776533
No 24
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.23 E-value=0.0014 Score=80.06 Aligned_cols=270 Identities=9% Similarity=-0.005 Sum_probs=158.6
Q ss_pred CcchhhHHHHHHHHhhcccCccccccHHHHHhhcc-CC-CChHHHHHHHHHHHHhchHHHh---------hCCCChhhHH
Q 003289 466 EWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KL-PQQPQLLQTVCLTIGAYSKWFD---------AASSDPSILA 534 (833)
Q Consensus 466 ~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~-~l-~~~~~v~~t~~~~ig~y~~~l~---------~~p~~~~~l~ 534 (833)
+-.-+-+++++++.+++.+.. +.+..++..+. .+ ..++.|+..++..+.++.+... .......+++
T Consensus 471 ~p~vr~~a~~~lg~~~~~~~~---~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~ 547 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQLTK---AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE 547 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGSCH---HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH
T ss_pred CceehHHHHHHHHHHHhhCCH---HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHH
Confidence 345578899999999998742 34555554332 22 2369999999999999876322 0000124788
Q ss_pred HHHHHHHhccCCC----HH--HHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHH
Q 003289 535 SVLSILTSGMSTS----ED--TAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVI 608 (833)
Q Consensus 535 ~~l~~l~~~l~~~----~~--v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi 608 (833)
.+++.++..++.. .+ ....+..++.+++...++.+.||.+.+++.+...+.......-+..-+..++|++|.++
T Consensus 548 ~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~ 627 (960)
T 1wa5_C 548 ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAIL 627 (960)
T ss_dssp HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 8998888777653 21 44688999999999999999999999998887766531000112345577999999999
Q ss_pred hcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhc--------------------cCCcc
Q 003289 609 TELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRY--------------------VNHPE 668 (833)
Q Consensus 609 ~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--------------------~~~~~ 668 (833)
.+..++....+.+.++.++ ..++++... ..... .+..++.+.+. ++.+.
T Consensus 628 ~~~~~~~~~~~~~~~~p~~----~~iL~~~~~-----~~~~~--~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 696 (960)
T 1wa5_C 628 NYTQRQNLPLLVDSMMPTF----LTVFSEDIQ-----EFIPY--VFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKG 696 (960)
T ss_dssp HTSCGGGHHHHHHHHHHHH----HHHHHTTCT-----TTHHH--HHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTT
T ss_pred hcCCcchHHHHHHHHHHHH----HHHHHhhhH-----hhHHH--HHHHHHHHHHhccCCCHHHHHHHHHHcCHHHhcCCC
Confidence 9866555555555544333 333333221 01111 12222222111 11011
Q ss_pred ---cHHHHHHHHH----------HHHHHHHHhhcCChHHHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHhhcCCc
Q 003289 669 ---AVADAIQRLW----------PIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRF-MGITIGAILEEIQGLYQQHQQP 734 (833)
Q Consensus 669 ---~~~~~~~~~~----------~~l~~il~~~~~~~~v~e~~~~~~~~~~~~~~~~-~~~~l~~l~~~l~~~~~~~~~~ 734 (833)
++...+..+. +.+..+++....+...-+.+|.+++.++..++.. +.|++|.++..+.+..+.....
T Consensus 697 ~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~ 776 (960)
T 1wa5_C 697 NIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAYEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTE 776 (960)
T ss_dssp THHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCH
T ss_pred CchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcH
Confidence 0111111110 2122222221111111267888888888877777 9999999999888876655433
Q ss_pred ----cHhhhHHHHHHHhcC
Q 003289 735 ----CFLYLSSEVIKIFGS 749 (833)
Q Consensus 735 ----~~L~~~~~li~~fg~ 749 (833)
.++..++.++..+|.
T Consensus 777 ~~~~~~l~~~~~~~~~~~~ 795 (960)
T 1wa5_C 777 RYVKKLTVFFGLISNKLGS 795 (960)
T ss_dssp HHHHHHHHHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHHHHcCH
Confidence 445666666666654
No 25
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.13 E-value=0.019 Score=66.11 Aligned_cols=460 Identities=12% Similarity=0.066 Sum_probs=227.8
Q ss_pred CCCHHHHHHHHHHHHHHhc-ChhH-HHHHHHHhcc-CCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHH
Q 003289 17 HPDDAVRMQADRWLQDFQH-TIDA-WQVADNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKK 93 (833)
Q Consensus 17 ~~d~~~r~~A~~~L~~~q~-s~~a-w~~~~~LL~~-~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~~ 93 (833)
++|.+.|+-..-++..+-+ .|+. -..+..|..+ .+.++.+|-.|+.+|-+-. +++-...+-..+...+..
T Consensus 81 s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~-------~~~~~~~l~~~l~~~L~~ 153 (618)
T 1w63_A 81 SQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG-------SSEMCRDLAGEVEKLLKT 153 (618)
T ss_dssp SSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHcC
Confidence 4566677777777765544 4442 2223333321 2356677877777776543 223233334444444433
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-CCcHHHHHHHHhhchhhcccccccCChhHHHHHHH
Q 003289 94 FHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-PEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEK 172 (833)
Q Consensus 94 ~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~~-~~~~~~~L~iL~~l~Ee~~~~~~~~~~~~r~~l~~ 172 (833)
.+++||++-+.++..++...+ +.=++ +++.+.+.++.. +......+..|..+.+.- + +...
T Consensus 154 ---~~~~VRk~A~~al~~l~~~~p-~~v~~--~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~--------~----~~~~ 215 (618)
T 1w63_A 154 ---SNSYLRKKAALCAVHVIRKVP-ELMEM--FLPATKNLLNEKNHGVLHTSVVLLTEMCERS--------P----DMLA 215 (618)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHCG-GGGGG--GGGGTTTSTTCCCHHHHHHHHHHHHHHCCSH--------H----HHHH
T ss_pred ---CCHHHHHHHHHHHHHHHHHCh-HHHHH--HHHHHHHHhCCCCHhHHHHHHHHHHHHHHhC--------h----HHHH
Confidence 578999999999998887544 22222 445555555432 233445566666554320 1 1123
Q ss_pred HHHHHHHHHHHHHHhhhh-------------hhHHHHHHHHHHHHHhhccCCCCccccccchhHHHHHhccC------C-
Q 003289 173 ELTSQMEVALSTLTACLH-------------INELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLH------S- 232 (833)
Q Consensus 173 ~l~~~~~~vl~~l~~~l~-------------~~~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~~~~L~------~- 232 (833)
.+....|.++.+|..... ++-.+..+++++...... .++. ...+++.+...+. +
T Consensus 216 ~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~----~~~~--~~~~~~~L~~l~~~~~~~~~~ 289 (618)
T 1w63_A 216 HFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN----DDDS--SEAMNDILAQVATNTETSKNV 289 (618)
T ss_dssp HHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT----CHHH--HHTTHHHHHHHHHTSCCSSTH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC----CHHH--HHHHHHHHHHHHhccccccch
Confidence 344556777777766432 233556677777655442 1110 1122333332221 1
Q ss_pred -cchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHHHHcCC
Q 003289 233 -EILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGS 311 (833)
Q Consensus 233 -~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~~~~~~~l~~~~ 311 (833)
..+.-.|+.++.. ... ...+....++.+.. .+.. .|.+......+.+..++...+..+.
T Consensus 290 ~~aV~~ea~~~i~~---l~~---------~~~l~~~a~~~L~~---~L~~--~d~~vr~~aL~~L~~i~~~~p~~~~--- 349 (618)
T 1w63_A 290 GNAILYETVLTIMD---IKS---------ESGLRVLAINILGR---FLLN--NDKNIRYVALTSLLKTVQTDHNAVQ--- 349 (618)
T ss_dssp HHHHHHHHHHHHHH---SCC---------CHHHHHHHHHHHHH---HHTC--SSTTTHHHHHHHHHHHHHHHHHHHG---
T ss_pred HHHHHHHHHHHHHh---cCC---------CHHHHHHHHHHHHH---HHhC--CCCchHHHHHHHHHHHHhhCHHHHH---
Confidence 1222333333332 111 11222212222211 1221 2222222333455556555554443
Q ss_pred chhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHhhcccccccCcccchHHHHHHHHHHhHHHHHHHHHHHHhhccCC
Q 003289 312 DESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYP 391 (833)
Q Consensus 312 ~~~~~~l~~ll~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p 391 (833)
.....++.+..+++..|...+++-.+.+... + ...+++.+++..+-.
T Consensus 350 ----~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~------------~------------nv~~iv~eL~~~l~~----- 396 (618)
T 1w63_A 350 ----RHRSTIVDCLKDLDVSIKRRAMELSFALVNG------------N------------NIRGMMKELLYFLDS----- 396 (618)
T ss_dssp ----GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS------------S------------STHHHHHHHHHHHHH-----
T ss_pred ----HHHHHHHHHccCCChhHHHHHHHHHHHHccc------------c------------cHHHHHHHHHHHHHh-----
Confidence 2345667788888889999998875544320 0 012233333332211
Q ss_pred CCCCCCChhhhHHhHhhhhcccccCCccchhhhhhhchhHHHHHHHhhcCh--hHHHHHHHHHHHHhHhhcCCCCCCcch
Q 003289 392 QDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGG--DATLKILYIKFVEGVACCGNKHNEWRP 469 (833)
Q Consensus 392 ~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~--~~~l~~l~~~l~~~~~~~~~~~~~w~~ 469 (833)
. + .+||.. +...+..++....+ ..++..+.+.+... .++-.
T Consensus 397 ~-----d-------~e~r~~-----------------~v~~I~~la~k~~~~~~~~v~~ll~lL~~~--------~~~v~ 439 (618)
T 1w63_A 397 C-----E-------PEFKAD-----------------CASGIFLAAEKYAPSKRWHIDTIMRVLTTA--------GSYVR 439 (618)
T ss_dssp C-----C-------HHHHHH-----------------HHHHHHHHHHSSCCCHHHHHHHHHHHHHHT--------GGGSC
T ss_pred C-----C-------HHHHHH-----------------HHHHHHHHHHHhCccHHHHHHHHHHHHHhc--------cchhH
Confidence 0 1 236666 66667676665432 34555555555432 12222
Q ss_pred hhHHHHHHHHhhcccCccccccHHHHHhhccC-CCChHHHHHHHHHHHHhchHHHhhC------CC--ChhhHHHHHHHH
Q 003289 470 AEAALFCIRAISTYVSVVEAEVMPQVMALLPK-LPQQPQLLQTVCLTIGAYSKWFDAA------SS--DPSILASVLSIL 540 (833)
Q Consensus 470 ~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~~-l~~~~~v~~t~~~~ig~y~~~l~~~------p~--~~~~l~~~l~~l 540 (833)
.| ++..+..+....++-....+..+++.+.. ....+. .+.++|++|.|+..+... |. ....+..++.-+
T Consensus 440 ~~-~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~-~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 517 (618)
T 1w63_A 440 DD-AVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPL-VQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESV 517 (618)
T ss_dssp SS-HHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHH-HHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHH-HHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHH
Confidence 22 33444445444433233456667666653 222344 457899999999988641 10 012344444444
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHH
Q 003289 541 TSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVI 608 (833)
Q Consensus 541 ~~~l~~~~~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi 608 (833)
+.....+..++..+..|+.++...+.+ ..+.+...+..... ..+.+.|.+.++....+.
T Consensus 518 l~~~~~~~~vr~~~lta~~Kl~~~~~~----~~~~l~~~L~~~~~-----~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 518 LISNMSTSVTRGYALTAIMKLSTRFTC----TVNRIKKVVSIYGS-----SIDVELQQRAVEYNALFK 576 (618)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHHTTCSS----CHHHHHHHHHHHTT-----CSCHHHHHHHHHHHHHHH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHhCcc----hHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHc
Confidence 433233434999999999999875532 22333333333322 245778888887665443
No 26
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.01 E-value=4e-05 Score=77.10 Aligned_cols=177 Identities=11% Similarity=0.123 Sum_probs=121.6
Q ss_pred CCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcc-CC--CChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHH
Q 003289 464 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KL--PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 540 (833)
Q Consensus 464 ~~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~-~l--~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l 540 (833)
+.+|..+.+++.++..+.+..+.-......++++.+. .+ ..++.|+..++.++|.++.-+... ...+.+.+++.+
T Consensus 26 s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~--~~~~~~~ilp~l 103 (242)
T 2qk2_A 26 EKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR--FSNYASACVPSL 103 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG--GHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHH
Confidence 5789999999999999988754322222345555442 22 248999999999999999877653 224788899999
Q ss_pred HhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChH-HHHH
Q 003289 541 TSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV-DAKK 618 (833)
Q Consensus 541 ~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~-~~~~ 618 (833)
+..+++++ .|+..|+.++..++..+ .++.++..+...+.. -+...|..++..++.++...+++ ...+
T Consensus 104 l~~l~d~~~~vr~~a~~aL~~~~~~~------~~~~ll~~l~~~l~~-----~~~~vr~~~l~~l~~~l~~~~~~~~~~~ 172 (242)
T 2qk2_A 104 LEKFKEKKPNVVTALREAIDAIYAST------SLEAQQESIVESLSN-----KNPSVKSETALFIARALTRTQPTALNKK 172 (242)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHTTS------CHHHHHHHHHHHTTC-----SCHHHHHHHHHHHHHHHTTCCGGGCCHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHcC-----CChHHHHHHHHHHHHHHHHcCCCCccHH
Confidence 99888764 59999999999998753 356677777777653 24678999999999998887544 2345
Q ss_pred HHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhcc
Q 003289 619 ALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYV 664 (833)
Q Consensus 619 ~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 664 (833)
++..++..+ ..++.... ...|.. +.++++.+.+.+
T Consensus 173 ~l~~l~p~l----~~~l~D~~-----~~VR~~--A~~~l~~l~~~v 207 (242)
T 2qk2_A 173 LLKLLTTSL----VKTLNEPD-----PTVRDS--SAEALGTLIKLM 207 (242)
T ss_dssp HHHHHHHHH----HHHHTSSC-----HHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHhcCCC-----hHHHHH--HHHHHHHHHHHc
Confidence 555554444 44443221 112332 566777766655
No 27
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00042 Score=69.68 Aligned_cols=167 Identities=14% Similarity=0.155 Sum_probs=122.5
Q ss_pred CCCcchhhHHHHHHHHhhcccC-cccc-ccHHHHHhhcc-CCCC-hHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHH
Q 003289 464 HNEWRPAEAALFCIRAISTYVS-VVEA-EVMPQVMALLP-KLPQ-QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSI 539 (833)
Q Consensus 464 ~~~w~~~Eaal~~l~~i~e~~~-~~~~-~~l~~l~~~l~-~l~~-~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~ 539 (833)
..+-.-+++|+.+++.+++.+. ..-. .+...++..+. .+.+ ++.|+..+...+-.+.......-. ..+++.+++.
T Consensus 72 D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~-~~~l~~ll~~ 150 (249)
T 2qk1_A 72 DANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLAS-SGRNEDMLKD 150 (249)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCT-TCTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccccc-CCcHHHHHHH
Confidence 3556678999999999999887 5544 55555554432 3332 578888888887777765422111 0137888888
Q ss_pred HHhccCCCH-HHHHHHHHHHHHHHHHhh---hhhhcCH-HHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChH
Q 003289 540 LTSGMSTSE-DTAAAAALAFRHICDDCR---KKLCGYL-DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV 614 (833)
Q Consensus 540 l~~~l~~~~-~v~~~A~~al~~l~~~~~---~~l~~~l-~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~ 614 (833)
++.++.+++ .++..+...+.++++..+ ..+.+++ +.++..+.+++.. -..+.|...+++++.+...++.+
T Consensus 151 l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D-----~~~~VR~aA~~~l~~i~~~vG~~ 225 (249)
T 2qk1_A 151 ILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND-----TQPAIRTIGFESFAILIKIFGMN 225 (249)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTC-----SSHHHHHHHHHHHHHHHHHHCSG
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHhCHH
Confidence 888887753 499999999999999887 5688899 9999999998863 35789999999999999999887
Q ss_pred HHHHHHHHhhhhhHHHHHHHHh
Q 003289 615 DAKKALEMLCLPVVTPLQEIIN 636 (833)
Q Consensus 615 ~~~~~l~~l~~p~~~~l~~~~~ 636 (833)
.+.+++..+-..=..+++.+..
T Consensus 226 ~~~p~l~~Ld~~k~~ki~~~~~ 247 (249)
T 2qk1_A 226 TFVKTLEHLDNLKRKKIEETVK 247 (249)
T ss_dssp GGHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHh
Confidence 7888887764444555555443
No 28
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.78 E-value=0.088 Score=64.22 Aligned_cols=250 Identities=11% Similarity=0.076 Sum_probs=132.1
Q ss_pred CcchhhHHHHHHHHhhcccCccc-cccHHH----HHhhcc---CCCC-hHHHHHHHHHHHHhchHHHh---hC-------
Q 003289 466 EWRPAEAALFCIRAISTYVSVVE-AEVMPQ----VMALLP---KLPQ-QPQLLQTVCLTIGAYSKWFD---AA------- 526 (833)
Q Consensus 466 ~w~~~Eaal~~l~~i~e~~~~~~-~~~l~~----l~~~l~---~l~~-~~~v~~t~~~~ig~y~~~l~---~~------- 526 (833)
+-...+..+-+++.++..++.++ .+++.. +++.+. +.+. .+.-+...+..++..+..+. ..
T Consensus 599 ~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~ 678 (971)
T 2x1g_F 599 KNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATD 678 (971)
T ss_dssp CHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC--------
T ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCccccc
Confidence 34567788888888887665221 233333 333221 2221 22223333344444433322 11
Q ss_pred ---CC-ChhhHHHHHHHHHhcc---CCCHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHH
Q 003289 527 ---SS-DPSILASVLSILTSGM---STSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLH 599 (833)
Q Consensus 527 ---p~-~~~~l~~~l~~l~~~l---~~~~~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~ 599 (833)
++ ...+.+.+++++...+ .+...+...|+.++.+++...++.+.||++.+++.+...++.. . ...
T Consensus 679 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~---~-----~~~ 750 (971)
T 2x1g_F 679 QPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTR---C-----CAP 750 (971)
T ss_dssp -----CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC-----C-----CHH
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcC---C-----chH
Confidence 11 1234555555554333 2222499999999999999999999999999999887766531 1 134
Q ss_pred HHHHHHHHHhcCChH-HHHHHHHHhhhhhHHHHHHHHhcCC-CcccccCchhhhHHHHHHHHhhhccCCcccHH--HH-H
Q 003289 600 LVEALSMVITELPQV-DAKKALEMLCLPVVTPLQEIINQGP-EILQKKHPRDLTVHIDRFAYIFRYVNHPEAVA--DA-I 674 (833)
Q Consensus 600 l~eai~~vi~~~~~~-~~~~~l~~l~~p~~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~--~~-~ 674 (833)
.++.++.++.....+ ...+.+..++.+++......+.+.. ...+ ..+.....+++.++.+.+.. |+.+. +. +
T Consensus 751 ~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~-~~pd~~~~~f~ll~~~l~~~--p~~~~~s~~~l 827 (971)
T 2x1g_F 751 TLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFS-NISDTMETFFGCLTQIIKKI--PQVLEDKTLAY 827 (971)
T ss_dssp HHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHH-HTHHHHHHHHHHHHHHHHSS--GGGGGCTTSCH
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCc-cCchHHHHHHHHHHHHHHhC--cHHHcCCcccH
Confidence 778888888887764 4556677777777766666665431 0000 01112233556666666543 22221 23 4
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH------hhhhhhhhHHHHHHHHHHHH
Q 003289 675 QRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRT------SKRFMGITIGAILEEIQGLY 728 (833)
Q Consensus 675 ~~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~------~~~~~~~~l~~l~~~l~~~~ 728 (833)
+.+++.....+. ..+......+|.++...+.. +..++..+.+.++..+....
T Consensus 828 ~~i~~~~~~~l~--~~~~~~~~s~~~fl~~~i~~~~~~~~~~~~~~~~g~~l~~~l~~~~ 885 (971)
T 2x1g_F 828 DRLVFYAQRGMT--LPESGAIRNSIQFLTHFVMQSRNHAHVTEVVLATGEQTLYTAMMCV 885 (971)
T ss_dssp HHHHHHHHHHHT--SSCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHhHHHHHHHHHHHh
Confidence 555665555554 24456667788888775443 12233444455555554433
No 29
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.64 E-value=0.002 Score=64.51 Aligned_cols=187 Identities=11% Similarity=0.023 Sum_probs=129.7
Q ss_pred hHHHHHHHHHHHHhchHHHhhCCCC-hhhHHHHHHHHHhccC-CCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHH
Q 003289 505 QPQLLQTVCLTIGAYSKWFDAASSD-PSILASVLSILTSGMS-TSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYR 581 (833)
Q Consensus 505 ~~~v~~t~~~~ig~y~~~l~~~p~~-~~~l~~~l~~l~~~l~-~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~ 581 (833)
+...|..++..++...+- +|.. ...+..+++.+...+. +++ .|+..|+.++..++...+..+.+|++.++..+.
T Consensus 28 ~w~~R~~a~~~L~~l~~~---~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll 104 (242)
T 2qk2_A 28 KWTLRKESLEVLEKLLTD---HPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLL 104 (242)
T ss_dssp SHHHHHHHHHHHHHHHHH---CSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcc---CCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 578899999888877543 2210 0134677777777773 543 499999999999999999989999999999998
Q ss_pred HHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhh
Q 003289 582 TAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIF 661 (833)
Q Consensus 582 ~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 661 (833)
..+.. -....|..+.+++..++...+. ..++.. +...++..+ .+-....++.++.++
T Consensus 105 ~~l~d-----~~~~vr~~a~~aL~~~~~~~~~-------~~ll~~----l~~~l~~~~-------~~vr~~~l~~l~~~l 161 (242)
T 2qk2_A 105 EKFKE-----KKPNVVTALREAIDAIYASTSL-------EAQQES----IVESLSNKN-------PSVKSETALFIARAL 161 (242)
T ss_dssp HGGGC-----CCHHHHHHHHHHHHHHHTTSCH-------HHHHHH----HHHHTTCSC-------HHHHHHHHHHHHHHH
T ss_pred HHHcC-----CCHHHHHHHHHHHHHHHHcCCH-------HHHHHH----HHHHHcCCC-------hHHHHHHHHHHHHHH
Confidence 88764 2367889999999988887652 223322 333333221 222234677777766
Q ss_pred hccCCcc-cHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhhhh-hhhhHHHH
Q 003289 662 RYVNHPE-AVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRF-MGITIGAI 720 (833)
Q Consensus 662 ~~~~~~~-~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~~~~~-~~~~l~~l 720 (833)
...+ |+ ....++..++|.+..++. ..+.+|++++..++..+...+|.. +.++++.+
T Consensus 162 ~~~~-~~~~~~~~l~~l~p~l~~~l~--D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L 219 (242)
T 2qk2_A 162 TRTQ-PTALNKKLLKLLTTSLVKTLN--EPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219 (242)
T ss_dssp TTCC-GGGCCHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTS
T ss_pred HHcC-CCCccHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 5542 33 345677888888888774 356799999999999988888765 66766543
No 30
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.40 E-value=0.038 Score=66.90 Aligned_cols=153 Identities=10% Similarity=0.075 Sum_probs=93.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 003289 545 STSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLC 624 (833)
Q Consensus 545 ~~~~~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~ 624 (833)
.....++.+++.+|++++...+..+.|+++.+++.+..-. +..+....+.-+|.++.....+ ..+.+..++
T Consensus 712 ~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~--------~~~e~~~fL~l~~qli~~f~~~-~~~~l~~ll 782 (980)
T 3ibv_A 712 GFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSI--------DMNELVDVLSFISQLIHIYKDN-MMEITNRML 782 (980)
T ss_dssp CCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHC--------CTTTHHHHHHHHHHHHHHTTTT-SHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3333499999999999999999999999999999887432 2345667778888889888766 778899999
Q ss_pred hhhHHHHHHHHhcCCCcccccCchh---hh-HHHHHHHHhhhccCCcccHH-HHHHH-HHHHHHHHHHhh--cCChHHHH
Q 003289 625 LPVVTPLQEIINQGPEILQKKHPRD---LT-VHIDRFAYIFRYVNHPEAVA-DAIQR-LWPIFKAIFDIR--AWDMRTME 696 (833)
Q Consensus 625 ~p~~~~l~~~~~~~~~~~~~~~~~~---~~-~~l~~l~~~~~~~~~~~~~~-~~~~~-~~~~l~~il~~~--~~~~~v~e 696 (833)
.|+++++-.++++...+.|. .|+ +. ..+..+..++...-+ .... +-=+. +-+++..++.-- -.|+....
T Consensus 783 ~~l~~~if~~l~~~~~~td~--~r~~~~l~r~~~~fl~~i~~~~~~-~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K 859 (980)
T 3ibv_A 783 PTLLMRIFSSLSAAPQGTDD--AVKQNDLRKSYISFILQLLNKGFG-SILFTEENQVYFDPLINSILHFANLVGEPATQK 859 (980)
T ss_dssp HHHHHHHHHHTTC----CCH--HHHHHHHHHHHHHHHHHHHHTTCT-GGGGSHHHHTTHHHHHHHHHHHC-----CHHHH
T ss_pred HHHHHHHHHHhcCCCCCcHH--HHHHHHHHHHHHHHHHHHHhCCch-hhhcCCcchHHHHHHHHHHHHHhccCCChHHHH
Confidence 99999999998875432221 121 11 123334444432111 1110 00011 112333333211 14566777
Q ss_pred HHHHHHHHHHHHh
Q 003289 697 SLCRACKYAVRTS 709 (833)
Q Consensus 697 ~~~~~~~~~~~~~ 709 (833)
.++.++.+++...
T Consensus 860 ~a~~~l~~~v~~~ 872 (980)
T 3ibv_A 860 SSIALVSKMVSLW 872 (980)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHH
Confidence 7888888888765
No 31
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.33 E-value=0.22 Score=55.80 Aligned_cols=387 Identities=13% Similarity=0.081 Sum_probs=196.2
Q ss_pred HHHHHhccC--CcchHHHHHHHHHHHHhhhccCCCCCCCCchhHHH-HHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHH
Q 003289 223 VLTALSSLH--SEILSEASVNVISELIHYSAAGSSGGATVNMPLIQ-VIVPQIMSLKAHLTDSSKDEEDVKAIARLFADM 299 (833)
Q Consensus 223 l~~~~~~L~--~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~-~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~ 299 (833)
++.++..|. +++.+..|+.+|..+++..... ....++. .++|.++. .+. ..++.+.....+..+..+
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~------~~~~~~~~g~v~~Lv~---lL~-~~~~~~v~~~A~~~L~~l 145 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSP------PIEEVIQSGVVPRFVQ---FLT-REDFPQLQFEAAWALTNI 145 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSC------CHHHHHHTTCHHHHHH---HHT-CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCc------hHHHHHHCCCHHHHHH---HhC-CCCCHHHHHHHHHHHHHH
Confidence 444555554 3567888999999888644211 1111221 12333222 222 222244444555556555
Q ss_pred hhH---HHHHHHcCCchhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHhhcccccccCcccchHHHHHHHHHHhHHH
Q 003289 300 GDS---YVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSA 376 (833)
Q Consensus 300 ~~~---~~~~l~~~~~~~~~~l~~ll~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (833)
+.. ....+.+. ..++.++.++..++.++...++..+..+...-. ..+. .+..
T Consensus 146 ~~~~~~~~~~~~~~-----g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~------------------~~~~-~i~~- 200 (528)
T 4b8j_A 146 ASGTSENTKVVIDH-----GAVPIFVKLLGSSSDDVREQAVWALGNVAGDSP------------------KCRD-LVLA- 200 (528)
T ss_dssp HTSCHHHHHHHHHT-----THHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCH------------------HHHH-HHHH-
T ss_pred hCCCHHHHHHHHhC-----CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCh------------------hhHH-HHHH-
Confidence 542 22222211 356777778888888888888877666643100 0000 0000
Q ss_pred HHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhhcccccCCccchhhhhhhchhHHHHHHHhhcCh--hHHHHHHHHHHH
Q 003289 377 YESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGG--DATLKILYIKFV 454 (833)
Q Consensus 377 ~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~--~~~l~~l~~~l~ 454 (833)
...+..++..+...+ + ...|.. +..++.+++..-.. ......++..|.
T Consensus 201 -~g~l~~Ll~lL~~~~-----~-------~~v~~~-----------------a~~~L~~L~~~~~~~~~~~~~~~l~~L~ 250 (528)
T 4b8j_A 201 -NGALLPLLAQLNEHT-----K-------LSMLRN-----------------ATWTLSNFCRGKPQPSFEQTRPALPALA 250 (528)
T ss_dssp -TTCHHHHHHTCCTTC-----C-------HHHHHH-----------------HHHHHHHHHCSSSCCCHHHHTTHHHHHH
T ss_pred -CCcHHHHHHHHhcCC-----C-------HHHHHH-----------------HHHHHHHHHcCCCCCcHHHHHHHHHHHH
Confidence 013333333331111 1 112333 45555555533110 111122333333
Q ss_pred HhHhhcCCCCCCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhh----
Q 003289 455 EGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDA---- 525 (833)
Q Consensus 455 ~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~-----~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~---- 525 (833)
..+. ..++.-++.++++++.++...... +...++.++..+.. .++.++..++.++|..+.--..
T Consensus 251 ~lL~-----~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~ 323 (528)
T 4b8j_A 251 RLIH-----SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH--PSPSVLIPALRTVGNIVTGDDAQTQC 323 (528)
T ss_dssp HHTT-----CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHC-----CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC--CChhHHHHHHHHHHHHHcCCHHHHHH
Confidence 3321 456788899999999998654321 12456677776643 2588999999999988741110
Q ss_pred --CCCChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhh---hh--cCHHHHHHHHHHHhcCcCCCCCCHhhHH
Q 003289 526 --ASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKK---LC--GYLDGLYNVYRTAVNGEGSLKVSAEDSL 598 (833)
Q Consensus 526 --~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~~~---l~--~~l~~ll~~l~~~l~~~~~~~l~~~~~~ 598 (833)
+.. .++.++..+-. .....++..|+.++.+++...... +. ..++.++..+ .. -+.+.+.
T Consensus 324 ~~~~~---~l~~L~~lL~~--~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL----~~-----~~~~v~~ 389 (528)
T 4b8j_A 324 IIDHQ---ALPCLLSLLTQ--NLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLL----QT-----AEFDIKK 389 (528)
T ss_dssp HHTTT---HHHHHHHHHHS--CCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHH----HH-----SCHHHHH
T ss_pred HHHhh---hHHHHHHHHcC--CCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHH----hc-----CCHHHHH
Confidence 111 45555554432 102349999999999998643322 22 3445555544 32 1467889
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCC--------cccH
Q 003289 599 HLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH--------PEAV 670 (833)
Q Consensus 599 ~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--------~~~~ 670 (833)
.+..+++.+.....++.. .++.. ...+..+..++.... ..-...++..+..+++.... ..+.
T Consensus 390 ~a~~aL~nl~~~~~~~~~-~~l~~--~~~i~~L~~lL~~~d-------~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~ 459 (528)
T 4b8j_A 390 EAAWAISNATSGGSHDQI-KYLVS--EGCIKPLCDLLICPD-------IRIVTVCLEGLENILKVGETDKTLAAGDVNVF 459 (528)
T ss_dssp HHHHHHHHHHHHSCHHHH-HHHHH--TTCHHHHHHGGGCSC-------HHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHH
T ss_pred HHHHHHHHHHcCCCHHHH-HHHHH--CCCHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHHHHhhhcccccccHH
Confidence 999999998877433322 22211 234444455554322 11223356666666654311 1223
Q ss_pred HHHHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 003289 671 ADAIQR--LWPIFKAIFDIRAWDMRTMESLCRACKYAVR 707 (833)
Q Consensus 671 ~~~~~~--~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~ 707 (833)
...+.+ .++.+..+. ...++++.+.+..++.+.+.
T Consensus 460 ~~~i~~~~~~~~l~~L~--~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 460 SQMIDEAEGLEKIENLQ--SHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp HHHHHHTTHHHHHHHGG--GCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCcHHHHHHHH--cCCCHHHHHHHHHHHHHHCC
Confidence 333332 234444332 23567888888777776554
No 32
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.19 E-value=0.004 Score=76.14 Aligned_cols=281 Identities=9% Similarity=0.085 Sum_probs=160.3
Q ss_pred HHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhcc----CCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHH
Q 003289 508 LLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGM----STSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRT 582 (833)
Q Consensus 508 v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l----~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~ 582 (833)
.|..+.+++...+..+.. ..++.+++++-..+ +.++ ..+..|.+++..+++.|.....++++.+++.+..
T Consensus 423 ~r~~~~~~L~~~~~~~~~-----~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~ 497 (963)
T 2x19_B 423 YRVDISDTLMYVYEMLGA-----ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR 497 (963)
T ss_dssp HHHHHHHHHHHHHHHHTH-----HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHccH-----HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh
Confidence 356666666665544432 26666777665555 3332 3788899999999988876666777777774432
Q ss_pred HhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhh
Q 003289 583 AVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFR 662 (833)
Q Consensus 583 ~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 662 (833)
+.. -....|..++.++|.....+... ..++.+++..+-..+.. . ..... +...+..+.+
T Consensus 498 l~~------~~~~vr~~~~~~l~~~~~~l~~~------~~~l~~vl~~l~~~l~~--~----~V~~~---A~~al~~l~~ 556 (963)
T 2x19_B 498 ISI------SNVQLADTVMFTIGALSEWLADH------PVMINSVLPLVLHALGN--P----ELSVS---SVSTLKKICR 556 (963)
T ss_dssp SCC------CSHHHHHHHHHHHHHTHHHHHHC------HHHHTTTHHHHHHHTTC--G----GGHHH---HHHHHHHHHH
T ss_pred CCC------CcHHHHHHHHHHHHHHHHHHHhC------HHHHHHHHHHHHHHhCC--c----hHHHH---HHHHHHHHHH
Confidence 211 12335556666666554332110 13566666666555532 1 11122 3333444434
Q ss_pred ccCCcccHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHhh---cC------
Q 003289 663 YVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSK-RFMGITIGAILEEIQGLYQQ---HQ------ 732 (833)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~~~-~~~~~~l~~l~~~l~~~~~~---~~------ 732 (833)
..+ ....+++..+++.+..++.....+.+..+.+.+++..++...+ ....+++..++..+...++. .+
T Consensus 557 ~~~--~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 634 (963)
T 2x19_B 557 ECK--YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNK 634 (963)
T ss_dssp HTG--GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHH
T ss_pred HHH--HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 332 2344566777777777776533356777888888888776554 45566666666555444432 11
Q ss_pred --CccHhhhHHHHHHHhcCCcc----------------hhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHH
Q 003289 733 --QPCFLYLSSEVIKIFGSDPS----------------CASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASR 794 (833)
Q Consensus 733 --~~~~L~~~~~li~~fg~~~~----------------~~~~~~~~~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~ 794 (833)
....+.+++.++..++...+ ....+..++..+......++.. ..+++++.+..+.++.+
T Consensus 635 ~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~v~e~~~~~l~~ 711 (963)
T 2x19_B 635 LAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSK---WLNDAQVVEAVCAIFEK 711 (963)
T ss_dssp HHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHh---ccCchHHHHHHHHHHHH
Confidence 12457778888888774210 1112333444444444444432 23567899999999999
Q ss_pred HHhhCCCccCCcCCcHHHHHHHHHccc
Q 003289 795 CIRYCPQLFIPSSVFPSLVDCSMIGIT 821 (833)
Q Consensus 795 ~~~~~p~~~~~~~~l~~~~~~~~~~l~ 821 (833)
++...+..+ .++++.++...+....
T Consensus 712 ~~~~~~~~~--~~~l~~~~~~l~~~~~ 736 (963)
T 2x19_B 712 SVKTLLDDF--APMVPQLCEMLGRMYS 736 (963)
T ss_dssp HHHHSSSTT--GGGHHHHHHHHHHHHH
T ss_pred HHHhhcccc--cccHHHHHHHHHHHHH
Confidence 998777666 3466776666655544
No 33
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.07 E-value=0.13 Score=59.02 Aligned_cols=228 Identities=9% Similarity=0.054 Sum_probs=125.7
Q ss_pred CCcchhhHHHHHHHHhhcccCccccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhcc
Q 003289 465 NEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGM 544 (833)
Q Consensus 465 ~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l 544 (833)
.+-..+-.|+.+++.++.. +-....++.+.+.+.. .+|.||++++.++++... .+|+ .++.+++.+...+
T Consensus 119 ~n~~vr~lAL~~L~~i~~~--~~~~~l~~~l~~~L~~--~~~~VRk~A~~al~~l~~---~~p~---~v~~~~~~l~~lL 188 (618)
T 1w63_A 119 STQFVQGLALCTLGCMGSS--EMCRDLAGEVEKLLKT--SNSYLRKKAALCAVHVIR---KVPE---LMEMFLPATKNLL 188 (618)
T ss_dssp SSSHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHS--CCHHHHHHHHHHHHHHHH---HCGG---GGGGGGGGTTTST
T ss_pred CCHhHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHH---HChH---HHHHHHHHHHHHh
Confidence 3445567788888888732 1011223444444432 479999999999998875 3565 5666666676777
Q ss_pred CCCH-HHHHHHHHHHHHHHHHhh---hhhhcCHHHHHHHHHHHhcCcCC--C----CCCHhhHHHHHHHHHHHHhcCChH
Q 003289 545 STSE-DTAAAAALAFRHICDDCR---KKLCGYLDGLYNVYRTAVNGEGS--L----KVSAEDSLHLVEALSMVITELPQV 614 (833)
Q Consensus 545 ~~~~-~v~~~A~~al~~l~~~~~---~~l~~~l~~ll~~l~~~l~~~~~--~----~l~~~~~~~l~eai~~vi~~~~~~ 614 (833)
.+++ .|+..|..++..++.... ..+.+.++.++..+.++..++.. . ..++.-+..+++.++.+...-|.
T Consensus 189 ~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~- 267 (618)
T 1w63_A 189 NEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD- 267 (618)
T ss_dssp TCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH-
T ss_pred CCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH-
Confidence 6653 499999999999986443 34557788888888776543210 0 12466788899998877654321
Q ss_pred HHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHhhcCChHH
Q 003289 615 DAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRT 694 (833)
Q Consensus 615 ~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~v 694 (833)
..+ .+..-+.+++...... .........+++.+++.... .+ .....+.+.+...+. ..++.+
T Consensus 268 -~~~-------~~~~~L~~l~~~~~~~----~~~~~aV~~ea~~~i~~l~~--~~--~l~~~a~~~L~~~L~--~~d~~v 329 (618)
T 1w63_A 268 -SSE-------AMNDILAQVATNTETS----KNVGNAILYETVLTIMDIKS--ES--GLRVLAINILGRFLL--NNDKNI 329 (618)
T ss_dssp -HHH-------TTHHHHHHHHHTSCCS----STHHHHHHHHHHHHHHHSCC--CH--HHHHHHHHHHHHHHT--CSSTTT
T ss_pred -HHH-------HHHHHHHHHHhccccc----cchHHHHHHHHHHHHHhcCC--CH--HHHHHHHHHHHHHHh--CCCCch
Confidence 111 1112222333221110 01112224455555444221 11 122334444444433 245677
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 003289 695 MESLCRACKYAVRTSKRFMGITIGAIL 721 (833)
Q Consensus 695 ~e~~~~~~~~~~~~~~~~~~~~l~~l~ 721 (833)
+..+...+..+...-...+.++.+.++
T Consensus 330 r~~aL~~L~~i~~~~p~~~~~~~~~i~ 356 (618)
T 1w63_A 330 RYVALTSLLKTVQTDHNAVQRHRSTIV 356 (618)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence 777777777666543333444444443
No 34
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.02 E-value=0.74 Score=52.62 Aligned_cols=127 Identities=11% Similarity=0.111 Sum_probs=72.6
Q ss_pred cCCCHHHHHHHHHHHHHHhcC-hhHHHHHHHHhc-c-CCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHH
Q 003289 16 HHPDDAVRMQADRWLQDFQHT-IDAWQVADNLLH-D-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLK 92 (833)
Q Consensus 16 ~~~d~~~r~~A~~~L~~~q~s-~~aw~~~~~LL~-~-~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~ 92 (833)
.++|.+.|+-+.-++..+-+. ++--.++..-+. + .+.++.+|-.|..++-+-. .++-...+-..+...+.
T Consensus 84 ~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~-------~~e~~~~l~~~v~~~l~ 156 (621)
T 2vgl_A 84 SSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVG-------SREMAEAFAGEIPKILV 156 (621)
T ss_dssp GCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC-------CHHHHHHHTTHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC-------CHHHHHHHHHHHHHHHh
Confidence 456777788888887766553 553333322222 1 1356677777877776642 23333334444444441
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhccccccC--CccchHHHHHhcCC-CCCcHHHHHHHHhhchh
Q 003289 93 KFHKGPPKVRTQISIAVAALAVHISAEDWG--GGGIVNWLRDEMNS-HPEFVPGFLELLTVLPE 153 (833)
Q Consensus 93 ~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp--~~~~~~~l~~~~~~-~~~~~~~~L~iL~~l~E 153 (833)
+ ...+++||++-+.++..++...+ +.-+ + +++.+.+.++. ++......+.++..+.+
T Consensus 157 ~-~d~~~~VRK~A~~al~kl~~~~p-~~~~~~~--~~~~l~~lL~d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 157 A-GDTMDSVKQSAALCLLRLYRTSP-DLVPMGD--WTSRVVHLLNDQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp C-SSSCHHHHHHHHHHHHHHHHHCG-GGCCCCS--CHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred C-CCCCHHHHHHHHHHHHHHHHhCh-hhcCchh--HHHHHHHHhCCCCccHHHHHHHHHHHHHH
Confidence 1 22578999999999999887544 3333 3 66667777753 22234455555555543
No 35
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.85 E-value=0.041 Score=62.01 Aligned_cols=221 Identities=14% Similarity=0.174 Sum_probs=127.7
Q ss_pred CCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHH
Q 003289 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSI 539 (833)
Q Consensus 465 ~~w~~~Eaal~~l~~i~e~~~~~-----~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~ 539 (833)
.++.-++.|+++++.++..-+.. ....++.++..+.. .++.++..++++++.++..-...+. ......+++.
T Consensus 185 ~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~~~~~-~~~~~~~l~~ 261 (530)
T 1wa5_B 185 GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS--NKPSLIRTATWTLSNLCRGKKPQPD-WSVVSQALPT 261 (530)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS--CCHHHHHHHHHHHHHHHCCSSSCCC-HHHHGGGHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc--CCHHHHHHHHHHHHHHhCCCCCCCc-HHHHHhHHHH
Confidence 35677899999999998653221 13567777777765 3688999999999988753211111 1233445555
Q ss_pred HHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHH-HHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHH
Q 003289 540 LTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLD-GLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK 617 (833)
Q Consensus 540 l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~-~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~ 617 (833)
++..+.+++ .++..|+.++.+++..........++ .++..+..++.. -+...+...+.+++.+....+ +...
T Consensus 262 L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~-----~~~~v~~~a~~~L~~l~~~~~-~~~~ 335 (530)
T 1wa5_B 262 LAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH-----ESTLVQTPALRAVGNIVTGND-LQTQ 335 (530)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC-----SCHHHHHHHHHHHHHHTTSCH-HHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC-----CChhhHHHHHHHHHHHHcCCH-HHHH
Confidence 655565543 49999999999999643221111111 233444444543 236678888889988876532 1111
Q ss_pred HHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHH-HHHHHHHHHHHHhhcCChHHHH
Q 003289 618 KALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI-QRLWPIFKAIFDIRAWDMRTME 696 (833)
Q Consensus 618 ~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~il~~~~~~~~v~e 696 (833)
..+. ...+..+..++.... ..-...++..|+.+..+. ++....++ ..++|.+..++.. .++++..
T Consensus 336 ~~~~---~~~l~~L~~lL~~~~-------~~vr~~A~~aL~~l~~~~--~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~ 401 (530)
T 1wa5_B 336 VVIN---AGVLPALRLLLSSPK-------ENIKKEACWTISNITAGN--TEQIQAVIDANLIPPLVKLLEV--AEYKTKK 401 (530)
T ss_dssp HHHH---TTHHHHHHHHTTCSC-------HHHHHHHHHHHHHHTTSC--HHHHHHHHHTTCHHHHHHHHHH--SCHHHHH
T ss_pred HHHH---cchHHHHHHHHcCCC-------HHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHhc--CCHHHHH
Confidence 2111 133444445554321 111123555666654421 22222222 3566777776653 5679999
Q ss_pred HHHHHHHHHHHH
Q 003289 697 SLCRACKYAVRT 708 (833)
Q Consensus 697 ~~~~~~~~~~~~ 708 (833)
.++.++..+...
T Consensus 402 ~a~~aL~~l~~~ 413 (530)
T 1wa5_B 402 EACWAISNASSG 413 (530)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999987765
No 36
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.79 E-value=0.033 Score=62.77 Aligned_cols=297 Identities=10% Similarity=0.090 Sum_probs=158.1
Q ss_pred CcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHH-------hhCCCChhhH
Q 003289 466 EWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWF-------DAASSDPSIL 533 (833)
Q Consensus 466 ~w~~~Eaal~~l~~i~e~~~~~-----~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l-------~~~p~~~~~l 533 (833)
++.-.+.++++++.++..-... ....++.++..+.+ .++.++..++++++.++..- ... . .+
T Consensus 144 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~--~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~-~---~l 217 (530)
T 1wa5_B 144 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT--GSVEVKEQAIWALGNVAGDSTDYRDYVLQC-N---AM 217 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH--CCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-T---CH
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCCccchHHHHHc-C---cH
Confidence 6888899999999998753321 13456777776653 36899999999999887421 111 1 45
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhh-hcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCC
Q 003289 534 ASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKL-CGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 612 (833)
Q Consensus 534 ~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~~~l-~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~ 612 (833)
+.++..+.. .++ .++..|+.++.++|....+.. ......++..+..++.. -+.+.+..+..+++.+....+
T Consensus 218 ~~L~~ll~~--~~~-~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~-----~d~~v~~~a~~~L~~L~~~~~ 289 (530)
T 1wa5_B 218 EPILGLFNS--NKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS-----MDTETLVDACWAISYLSDGPQ 289 (530)
T ss_dssp HHHHHGGGS--CCH-HHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC-----CCHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHhcc--CCH-HHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcC-----CCHHHHHHHHHHHHHHhCCCH
Confidence 555544422 223 499999999999996431111 11223344555555543 236678888889988876532
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHH-HHHHHHHHHHHHhhcCC
Q 003289 613 QVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI-QRLWPIFKAIFDIRAWD 691 (833)
Q Consensus 613 ~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~il~~~~~~ 691 (833)
+.....+. ..++..+..++.... ..-...++..++.+.... +.....++ ..+.|.+..++.. .+
T Consensus 290 -~~~~~~~~---~~~v~~Lv~lL~~~~-------~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~l~~L~~lL~~--~~ 354 (530)
T 1wa5_B 290 -EAIQAVID---VRIPKRLVELLSHES-------TLVQTPALRAVGNIVTGN--DLQTQVVINAGVLPALRLLLSS--PK 354 (530)
T ss_dssp -HHHHHHHH---TTCHHHHHHGGGCSC-------HHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHHTTC--SC
T ss_pred -HHHHHHHh---cCcHHHHHHHHCCCC-------hhhHHHHHHHHHHHHcCC--HHHHHHHHHcchHHHHHHHHcC--CC
Confidence 22222221 234455555554321 111223566666655432 11111122 2455666555543 36
Q ss_pred hHHHHHHHHHHHHHHHHhhhh----h-hhhHHHHHHHHHHHHhhcCCccHhhhHHHHHHHhcCCcchhHHHHHHHH-HHH
Q 003289 692 MRTMESLCRACKYAVRTSKRF----M-GITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIE-ALF 765 (833)
Q Consensus 692 ~~v~e~~~~~~~~~~~~~~~~----~-~~~l~~l~~~l~~~~~~~~~~~~L~~~~~li~~fg~~~~~~~~~~~~~~-~l~ 765 (833)
..+.+.++.++..+....... + ...+|.++..+... ...-....++.++.+....+..++... .++. .++
T Consensus 355 ~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~---~l~~~~~l 430 (530)
T 1wa5_B 355 ENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIR---YLVSQGCI 430 (530)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHH---HHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHH---HHHHCCCH
Confidence 789999999988765321111 1 23456666554320 000012334555555543222112222 2221 133
Q ss_pred HHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCC
Q 003289 766 KRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCP 800 (833)
Q Consensus 766 ~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~~~~~p 800 (833)
...+.++. ..+|++.......+..++...+
T Consensus 431 ~~L~~ll~-----~~~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 431 KPLCDLLE-----IADNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp HHHHHHTT-----TCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-----CCCHHHHHHHHHHHHHHHHhhh
Confidence 33444443 3467788888788877777554
No 37
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.78 E-value=0.042 Score=61.84 Aligned_cols=222 Identities=10% Similarity=0.104 Sum_probs=128.2
Q ss_pred CCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHH
Q 003289 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSI 539 (833)
Q Consensus 465 ~~w~~~Eaal~~l~~i~e~~~~~-----~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~ 539 (833)
.+..-++.++++++.++..-+.. ....++.++..+..- .++.++..++++++.++..-. .+. ......+++.
T Consensus 172 ~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~v~~~a~~~L~~L~~~~~-~~~-~~~~~~~l~~ 248 (528)
T 4b8j_A 172 SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH-TKLSMLRNATWTLSNFCRGKP-QPS-FEQTRPALPA 248 (528)
T ss_dssp SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT-CCHHHHHHHHHHHHHHHCSSS-CCC-HHHHTTHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCCC-CCc-HHHHHHHHHH
Confidence 46677899999999998643221 124577777776432 368999999999998875321 111 1244556666
Q ss_pred HHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHH-HHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHH
Q 003289 540 LTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLD-GLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK 617 (833)
Q Consensus 540 l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~-~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~ 617 (833)
+...+.+++ .++..|+.++.+++..........+. .++..+..++.. -+...+...+.+++.+....+ +...
T Consensus 249 L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~-----~~~~v~~~a~~~L~nl~~~~~-~~~~ 322 (528)
T 4b8j_A 249 LARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH-----PSPSVLIPALRTVGNIVTGDD-AQTQ 322 (528)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC-----SCHHHHHHHHHHHHHHTTSCH-HHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC-----CChhHHHHHHHHHHHHHcCCH-HHHH
Confidence 666666543 59999999999998543322111000 233344444543 235678888889998877532 2222
Q ss_pred HHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHH-HHHHHHHHHHHHhhcCChHHHH
Q 003289 618 KALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI-QRLWPIFKAIFDIRAWDMRTME 696 (833)
Q Consensus 618 ~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~il~~~~~~~~v~e 696 (833)
..+. ...+..+..++..... ...+ ..+...|+.+... .++....++ ..++|.+..++.. .+.++.+
T Consensus 323 ~~~~---~~~l~~L~~lL~~~~~----~~v~--~~A~~~L~nl~~~--~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~ 389 (528)
T 4b8j_A 323 CIID---HQALPCLLSLLTQNLK----KSIK--KEACWTISNITAG--NKDQIQAVINAGIIGPLVNLLQT--AEFDIKK 389 (528)
T ss_dssp HHHT---TTHHHHHHHHHHSCCC----HHHH--HHHHHHHHHHHTS--CHHHHHHHHHTTCHHHHHHHHHH--SCHHHHH
T ss_pred HHHH---hhhHHHHHHHHcCCCc----HHHH--HHHHHHHHHHHCC--CHHHHHHHHHCCCHHHHHHHHhc--CCHHHHH
Confidence 2221 2234445555554311 0111 2234445554432 122222222 2566777777764 3788999
Q ss_pred HHHHHHHHHHHH
Q 003289 697 SLCRACKYAVRT 708 (833)
Q Consensus 697 ~~~~~~~~~~~~ 708 (833)
.++.++..+...
T Consensus 390 ~a~~aL~nl~~~ 401 (528)
T 4b8j_A 390 EAAWAISNATSG 401 (528)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC
Confidence 999999887654
No 38
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.62 E-value=0.27 Score=56.05 Aligned_cols=129 Identities=15% Similarity=0.106 Sum_probs=81.8
Q ss_pred CCCcchhhHHHHHHHHhhcccCccc-cccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHH--HHHHHH
Q 003289 464 HNEWRPAEAALFCIRAISTYVSVVE-AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILA--SVLSIL 540 (833)
Q Consensus 464 ~~~w~~~Eaal~~l~~i~e~~~~~~-~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~--~~l~~l 540 (833)
+.+...+..|+.+++.++ .++- ...++.+.+.+. ..+|.||++++..+++... .+|+ .++ .+++.+
T Consensus 97 ~~n~~ir~~AL~~L~~i~---~~~~~~~l~~~l~~~L~--d~~~~VRk~A~~al~~i~~---~~p~---~~~~~~~~~~l 165 (591)
T 2vgl_B 97 DPNPLIRALAVRTMGCIR---VDKITEYLCEPLRKCLK--DEDPYVRKTAAVCVAKLHD---INAQ---MVEDQGFLDSL 165 (591)
T ss_dssp SSSHHHHHHHHHHHHTCC---SGGGHHHHHHHHHHHSS--CSCHHHHHHHHHHHHHHHH---SSCC---CHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHcC--CCChHHHHHHHHHHHHHHh---hChh---hcccccHHHHH
Confidence 344555677777777765 2211 223344544443 2489999999999998765 4566 455 577888
Q ss_pred HhccCCCH-HHHHHHHHHHHHHHHHhhhh-hhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHH
Q 003289 541 TSGMSTSE-DTAAAAALAFRHICDDCRKK-LCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVI 608 (833)
Q Consensus 541 ~~~l~~~~-~v~~~A~~al~~l~~~~~~~-l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi 608 (833)
...+.+++ .|+..|..+|.++|....+. ........+..+.+.+.. .++..+..+++.++.+.
T Consensus 166 ~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~-----~~~~~q~~il~~l~~l~ 230 (591)
T 2vgl_B 166 RDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNE-----CTEWGQIFILDCLSNYN 230 (591)
T ss_dssp HHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHTSC
T ss_pred HHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCC-----CCchHHHHHHHHHHHhC
Confidence 88887664 59999999999998764432 234444444444444332 34667788887775443
No 39
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.58 E-value=0.1 Score=57.13 Aligned_cols=219 Identities=13% Similarity=0.150 Sum_probs=128.4
Q ss_pred CCCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHH
Q 003289 464 HNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLS 538 (833)
Q Consensus 464 ~~~w~~~Eaal~~l~~i~e~~~~~-----~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~ 538 (833)
+.+..-++.++++++.++...... ....++.+++.+.. ..++.++..++++++.++..-...+. ......+++
T Consensus 118 ~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~l~ 195 (450)
T 2jdq_A 118 SEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK-QNRLTMTRNAVWALSNLCRGKSPPPE-FAKVSPCLN 195 (450)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS-CCCHHHHHHHHHHHHHHHCCSSSCCC-GGGTGGGHH
T ss_pred CCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC-CCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHH
Confidence 356788899999999998754321 13456777776653 23689999999999988753211111 123345555
Q ss_pred HHHhccCCCH-HHHHHHHHHHHHHHHHhh---hhhh--cCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCC
Q 003289 539 ILTSGMSTSE-DTAAAAALAFRHICDDCR---KKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 612 (833)
Q Consensus 539 ~l~~~l~~~~-~v~~~A~~al~~l~~~~~---~~l~--~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~ 612 (833)
.++..+.+++ .++..|+.++.+++.... ..+. +.++.++. ++.. -+.+.+.....+++.+....+
T Consensus 196 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~----ll~~-----~~~~v~~~a~~~L~~l~~~~~ 266 (450)
T 2jdq_A 196 VLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVE----LLMH-----NDYKVVSPALRAVGNIVTGDD 266 (450)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHH----HTTC-----SCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHH----HHCC-----CchhHHHHHHHHHHHHhhCCh
Confidence 5555565432 499999999999986432 2221 34444443 4432 236778888999998876532
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHH-HHHHHHHHHHHHhhcCC
Q 003289 613 QVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI-QRLWPIFKAIFDIRAWD 691 (833)
Q Consensus 613 ~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~il~~~~~~ 691 (833)
+.....+. ...+..+.+++.... ..-...++..++.+..+. ++....++ ..++|.+..++.. .+
T Consensus 267 -~~~~~~~~---~~~l~~L~~ll~~~~-------~~vr~~a~~~L~~l~~~~--~~~~~~~~~~~~l~~L~~~l~~--~~ 331 (450)
T 2jdq_A 267 -IQTQVILN---CSALQSLLHLLSSPK-------ESIKKEACWTISNITAGN--RAQIQTVIDANIFPALISILQT--AE 331 (450)
T ss_dssp -HHHHHHHT---TTHHHHHHHHTTCSS-------HHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHHHHH--SC
T ss_pred -HHHHHHHH---CccHHHHHHHHcCCC-------HHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHhc--CC
Confidence 11111111 134444555554321 111223556666655421 12222233 3667777776653 56
Q ss_pred hHHHHHHHHHHHHHHHH
Q 003289 692 MRTMESLCRACKYAVRT 708 (833)
Q Consensus 692 ~~v~e~~~~~~~~~~~~ 708 (833)
++++..+|.++..+...
T Consensus 332 ~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 332 FRTRKEAAWAITNATSG 348 (450)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 88999999999987654
No 40
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.53 E-value=0.039 Score=66.90 Aligned_cols=290 Identities=11% Similarity=0.118 Sum_probs=160.2
Q ss_pred hHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCC-----CH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHH
Q 003289 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST-----SE-DTAAAAALAFRHICDDCRKKLCGYLDGLYN 578 (833)
Q Consensus 505 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~-----~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~ 578 (833)
+-..+.++++.+|+.++=..... ...+++.+++.+++-+.+ ++ .|+..+++.+.++++=.+.+ ..+++++++
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~-e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~-~~~L~~vl~ 543 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDT-EKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVIL 543 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHH-HHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchh-HHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHH
Confidence 56889999999999876333210 013788999988765542 22 36667889999888765432 235777777
Q ss_pred HHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHH--------HHhhhhhHHHHHHHHhcCCCcccccCchhh
Q 003289 579 VYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKAL--------EMLCLPVVTPLQEIINQGPEILQKKHPRDL 650 (833)
Q Consensus 579 ~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l--------~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~ 650 (833)
.+...+.. -.+..+.....|+..+..... ..+ ..++.++++.+.++.... ..+..
T Consensus 544 ~L~~~l~~-----~~~~v~~~A~~al~~l~~~c~-----~~l~~~~~~e~~p~~~~il~~l~~~~~~l-------~~~~~ 606 (1023)
T 4hat_C 544 KLFEFMHE-----THEGVQDMACDTFIKIVQKCK-----YHFVIQQPRESEPFIQTIIRDIQKTTADL-------QPQQV 606 (1023)
T ss_dssp HHHHHTTC-----SCHHHHHHHHHHHHHHHHHHT-----HHHHSCCTTCSSCHHHHHHHTHHHHHTTS-------CHHHH
T ss_pred HHHHHhhc-----CCHHHHHHHHHHHHHHHHHHH-----HHhhccCCCCCchhHHHHHHHHHHHHHhC-------CHHHH
Confidence 76665532 113355666666666655432 212 124455555555555432 12334
Q ss_pred hHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHhhc----------CChHHHHH---HHHHHHHHHHHhhhhhhhhH
Q 003289 651 TVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRA----------WDMRTMES---LCRACKYAVRTSKRFMGITI 717 (833)
Q Consensus 651 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~----------~~~~v~e~---~~~~~~~~~~~~~~~~~~~l 717 (833)
....+.++.+++..........+++.+++.+........ .|++.... +++++..+...+|+.+.|++
T Consensus 607 ~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~ 686 (1023)
T 4hat_C 607 HTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQL 686 (1023)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHH
Confidence 457799999988874322244566666655554443321 12333333 44555566667888777777
Q ss_pred HHHHHHHHHHHhhc-----------C-----Cc----------cHhhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHh
Q 003289 718 GAILEEIQGLYQQH-----------Q-----QP----------CFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCL 771 (833)
Q Consensus 718 ~~l~~~l~~~~~~~-----------~-----~~----------~~L~~~~~li~~fg~~~~~~~~~~~~~~~l~~~~~~~ 771 (833)
..+...++..|+.. . .+ .+|.++...|. +.++......+++++++..++.-
T Consensus 687 ~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~---~~~~~~~~~~~~~~~l~~~vl~d 763 (1023)
T 4hat_C 687 GHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYIS---KARNLDDVVKVLVEPLLNAVLED 763 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHH---HCSCHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHhHHHHHHHHHHH
Confidence 76666555444431 0 00 12223333332 22223344555666666666554
Q ss_pred hcccccCCcCCchH-HHHHHHHHHHHhhCCCccCC--cCCcHHHHHHHHHccc
Q 003289 772 LTSIEEFTSRPDVA-DDCFLLASRCIRYCPQLFIP--SSVFPSLVDCSMIGIT 821 (833)
Q Consensus 772 l~~~~~~~~~pd~~-~~~f~l~~~~~~~~p~~~~~--~~~l~~~~~~~~~~l~ 821 (833)
.. ...|+.. -+++.+++.++++....+.+ ...++.+|++++.=++
T Consensus 764 Y~-----~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~ 811 (1023)
T 4hat_C 764 YM-----NNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMIN 811 (1023)
T ss_dssp HH-----HSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHS
T ss_pred HH-----hCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHh
Confidence 43 2233332 23557778788766654433 2347777777776555
No 41
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.50 E-value=0.63 Score=54.94 Aligned_cols=494 Identities=11% Similarity=0.074 Sum_probs=232.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhc---ChhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCCCCChhhHH-
Q 003289 6 TVKEALNALYHHPDDAVRMQADRWLQDFQH---TIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVR- 81 (833)
Q Consensus 6 ~v~~al~~ly~~~d~~~r~~A~~~L~~~q~---s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~- 81 (833)
.+...++.|. +++.+.|+.|-+.|....+ ..++|.....+|.+ .++.+|--|+.+|.+..... +.+.
T Consensus 116 ~i~~lv~~L~-~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~--~d~~vr~~A~~~L~~L~~~~------~~~~~ 186 (780)
T 2z6g_A 116 AHPTNVQRLA-EPSQMLKHAVVNLINYQDDAELATRAIPELTKLLND--EDQVVVNKAAVMVHQLSKKE------ASRHA 186 (780)
T ss_dssp -----------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHHTSH------HHHHH
T ss_pred cHHHHHHHhc-CccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCC--CCHHHHHHHHHHHHHHhCCC------hhHHH
Confidence 3456666664 3466666666666553221 26678888888874 57789999999998765421 1221
Q ss_pred -----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccc-cccCCccchHHHHHhcCCCC-CcHHHHHHHHhhchhh
Q 003289 82 -----GLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISA-EDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEE 154 (833)
Q Consensus 82 -----~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~-~~Wp~~~~~~~l~~~~~~~~-~~~~~~L~iL~~l~Ee 154 (833)
.+-..|+..+.. ..+..++...+.+|..+...... ..-.+.+.++.+++.+.+.. ......+..|..|+..
T Consensus 187 i~~~~~~i~~Lv~~L~~--~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~ 264 (780)
T 2z6g_A 187 IMRSPQMVSAIVRTMQN--TNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLH 264 (780)
T ss_dssp HTTCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHhccChHHHHHHHHcC--CCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 233334444443 12567888888888876543110 00000025677777776532 3345566777766543
Q ss_pred cccccccCChhHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHhhccCCCCccccccchhHHHHHhccCC
Q 003289 155 VFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHI--NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHS 232 (833)
Q Consensus 155 ~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~--~~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~~~~L~~ 232 (833)
-. ..+..+.+ ..++..+...+.+ ..+...++.|+..|..-. .-....+.....++.+...|.+
T Consensus 265 ~~--------~~~~~v~~------~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~-~e~~~~i~~~~~i~~Lv~lL~~ 329 (780)
T 2z6g_A 265 QE--------GAKMAVRL------AGGLQKMVALLNKTNVKFLAITTDCLQILAYGN-QESKLIILASGGPQALVNIMRT 329 (780)
T ss_dssp ST--------THHHHHHH------TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC-HHHHHHHHTTTHHHHHHHHHTT
T ss_pred Ch--------hhHHHHHH------cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHcCCHHHHHHHHhc
Confidence 21 11111110 1233344444433 356777888888887411 0000012233456666666654
Q ss_pred c---chHHHHHHHHHHHHhhhccCCCCCCCCchhHHH-HHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHHHH
Q 003289 233 E---ILSEASVNVISELIHYSAAGSSGGATVNMPLIQ-VIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIA 308 (833)
Q Consensus 233 ~---~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~-~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~~~~~~~l~ 308 (833)
. .....++.++..+..... ....+++ ..++.++.+ + .+.+.+..+..+..+..++....
T Consensus 330 ~~~~~~~~~a~~aL~~Ls~~~~--------~~~~i~~~g~l~~Ll~l---L--~~~~~~~~~~a~~~L~~L~~~~~---- 392 (780)
T 2z6g_A 330 YTYEKLLWTTSRVLKVLSVCSS--------NKPAIVEAGGMQALGLH---L--TDPSQRLVQNCLWTLRNLSDAAT---- 392 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHTSTT--------HHHHHHHTTHHHHHGGG---T--TCSCHHHHHHHHHHHHHHHTTCT----
T ss_pred CCHHHHHHHHHHHHHHhhcChH--------HHHHHHHhchHHHHHHH---H--cCCchHHHHHHHHHHHHHhccch----
Confidence 3 234556666666653211 1111221 122322221 1 12344555555555555443211
Q ss_pred cCCchhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHhhcccccccCcccchHHHHHHHHHHhH-HHHHHHHHHHHhh
Q 003289 309 TGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFR-SAYESLVSLVSFR 387 (833)
Q Consensus 309 ~~~~~~~~~l~~ll~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ll~~l~~k 387 (833)
.......++..++.++..++.++...+......+ .. ++. ..+. .... ..+..|+..+..
T Consensus 393 -~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L----~~-------~~~----~~~~---~i~~~g~i~~Lv~lL~~- 452 (780)
T 2z6g_A 393 -KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL----TC-------NNY----KNKM---MVCQVGGIEALVRTVLR- 452 (780)
T ss_dssp -TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH----TS-------SCH----HHHH---HHHTTTHHHHHHHHHHH-
T ss_pred -hhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHH----Hh-------CCH----HHHH---HHHHCCCHHHHHHHHHc-
Confidence 0112346677777877777777766554443222 11 000 0011 0111 122333332221
Q ss_pred ccCCCCCCCCChhhhHHhHhhhhcccccCCccchhhhhhhchhHHHHHHHhhcChhHHHH------HHHHHHHHhHhhcC
Q 003289 388 VQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLK------ILYIKFVEGVACCG 461 (833)
Q Consensus 388 ~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~------~l~~~l~~~~~~~~ 461 (833)
+.+ .+ +.|.. +..++.+++..-+.....+ .....|.+.+.
T Consensus 453 ---~~~-----~~------~v~~~-----------------Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~--- 498 (780)
T 2z6g_A 453 ---AGD-----RE------DITEP-----------------AICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLH--- 498 (780)
T ss_dssp ---HTT-----CH------HHHHH-----------------HHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTS---
T ss_pred ---cCC-----HH------HHHHH-----------------HHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhc---
Confidence 111 00 12222 2333333321111000000 01122222221
Q ss_pred CCCCCcchhhHHHHHHHHhhcccCcc----ccccHHHHHhhccC-----------------CC---ChHHHHHHHHHHHH
Q 003289 462 NKHNEWRPAEAALFCIRAISTYVSVV----EAEVMPQVMALLPK-----------------LP---QQPQLLQTVCLTIG 517 (833)
Q Consensus 462 ~~~~~w~~~Eaal~~l~~i~e~~~~~----~~~~l~~l~~~l~~-----------------l~---~~~~v~~t~~~~ig 517 (833)
....|.-+++++++++.++..-... +...++.+++.+.. +. ....++..++.+++
T Consensus 499 -~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~ 577 (780)
T 2z6g_A 499 -PPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALH 577 (780)
T ss_dssp -TTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHH
Confidence 1456888899999999998532111 12345555554421 11 13457777788888
Q ss_pred hchHH------HhhCCCChhhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHH--hhhhhhcCHHHHHHHHHHHhcCcC
Q 003289 518 AYSKW------FDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDD--CRKKLCGYLDGLYNVYRTAVNGEG 588 (833)
Q Consensus 518 ~y~~~------l~~~p~~~~~l~~~l~~l~~~l~~~-~~v~~~A~~al~~l~~~--~~~~l~~~l~~ll~~l~~~l~~~~ 588 (833)
.++.. +.... .++.++.. +.++ ..++..|+.++.+++.+ .+..+... ..+..+..++..
T Consensus 578 ~La~~~~~~~~l~~~~----~i~~Lv~l----L~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~--g~i~~L~~Ll~~-- 645 (780)
T 2z6g_A 578 ILARDIHNRIVIRGLN----TIPLFVQL----LYSPIENIQRVAAGVLCELAQDKEAAEAIEAE--GATAPLTELLHS-- 645 (780)
T ss_dssp HHTTSHHHHHHHHHTC----CHHHHHHG----GGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHT--TCHHHHHHGGGC--
T ss_pred HHhcChhhHHHHHHCC----cHHHHHHH----HcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHC--CCHHHHHHHHcC--
Confidence 76531 11111 34554444 4333 24999999999999743 22223210 123344445543
Q ss_pred CCCCCHhhHHHHHHHHHHHHhcCC
Q 003289 589 SLKVSAEDSLHLVEALSMVITELP 612 (833)
Q Consensus 589 ~~~l~~~~~~~l~eai~~vi~~~~ 612 (833)
-+.+.|.....+++.+...-|
T Consensus 646 ---~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 646 ---RNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp ---SCHHHHHHHHHHHHHHHTTSC
T ss_pred ---CCHHHHHHHHHHHHHHHcCCh
Confidence 246788889999988877655
No 42
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.40 E-value=0.12 Score=63.42 Aligned_cols=205 Identities=9% Similarity=0.064 Sum_probs=118.7
Q ss_pred hHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccC-----CCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHH
Q 003289 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMS-----TSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYN 578 (833)
Q Consensus 505 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~-----~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~ 578 (833)
+.+.+.+++..+|+.++-+....+ ..+++.+++++..... ++. .++..++.++.++++-.+.+ ..+++.+++
T Consensus 466 ~W~~~eaal~algsia~~~~~~~e-~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl~ 543 (1049)
T 3m1i_C 466 SWHNINTLSWAIGSISGTMSEDTE-KRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVIL 543 (1049)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHH-HHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCchhh-HHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHH
Confidence 567899999999988754322100 1268888888765221 122 25557889999888765543 245666776
Q ss_pred HHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHH--------HhhhhhHHHHHHHHhcCCCcccccCchhh
Q 003289 579 VYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALE--------MLCLPVVTPLQEIINQGPEILQKKHPRDL 650 (833)
Q Consensus 579 ~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~--------~l~~p~~~~l~~~~~~~~~~~~~~~~~~~ 650 (833)
.+...+.. -....+.....++..++...+ ..+. .++.++++.+..++.... ....
T Consensus 544 ~ll~~l~~-----~~~~V~~~A~~al~~l~~~~~-----~~l~~~~~~~~~p~~~~il~~l~~~~~~~~-------~~~~ 606 (1049)
T 3m1i_C 544 KLFEFMHE-----THEGVQDMACDTFIKIVQKCK-----YHFVIQQPRESEPFIQTIIRDIQKTTADLQ-------PQQV 606 (1049)
T ss_dssp HHHHHTTS-----SCHHHHHHHHHHHHHHHHHHT-----HHHHSCCTTCSSCHHHHHHHTHHHHHTTSC-------HHHH
T ss_pred HHHHHhcC-----CCHHHHHHHHHHHHHHHHHHH-----HHhhcccCCCCCcHHHHHHHHHHHHHHhCC-------HHHH
Confidence 66655542 235677777777777776533 2221 345556666666665422 1223
Q ss_pred hHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHH----HHhhc------CChHHHH---HHHHHHHHHHHHhhhhhhhhH
Q 003289 651 TVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAI----FDIRA------WDMRTME---SLCRACKYAVRTSKRFMGITI 717 (833)
Q Consensus 651 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~i----l~~~~------~~~~v~e---~~~~~~~~~~~~~~~~~~~~l 717 (833)
....++++.++...+.++...++++.+++.+.+- +.... .+++... .++.++..+.+.+|+.+.|++
T Consensus 607 ~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~ 686 (1049)
T 3m1i_C 607 HTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQL 686 (1049)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3467888888876643334556667766654332 22111 1332222 345566677777888877777
Q ss_pred HHHHHHHHHHH
Q 003289 718 GAILEEIQGLY 728 (833)
Q Consensus 718 ~~l~~~l~~~~ 728 (833)
+.+...++..|
T Consensus 687 ~~i~~~~l~~~ 697 (1049)
T 3m1i_C 687 GHIYYNMLQLY 697 (1049)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66554433333
No 43
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.33 E-value=0.058 Score=65.30 Aligned_cols=299 Identities=13% Similarity=0.141 Sum_probs=157.0
Q ss_pred hHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCC-----H-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHH
Q 003289 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-----E-DTAAAAALAFRHICDDCRKKLCGYLDGLYN 578 (833)
Q Consensus 505 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~-----~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~ 578 (833)
+-....+.|+.+|+.+.-+....+ ..+++.+++++++-..++ + .++...++.+.+.++=.+.+ ..+++++++
T Consensus 492 sW~~lea~~~aigaIag~~~~~~E-~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h-~~~L~~vl~ 569 (1073)
T 3gjx_A 492 SWKNLNTLCWAIGSISGAMHEEDE-KRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAH-WKFLKTVVN 569 (1073)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHH-HHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHH
T ss_pred CHHHHhHHHHHHHHHHCcCCcccc-cchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhC-HHHHHHHHH
Confidence 578899999999999764432101 148999999997654433 1 13444446666665544433 246677777
Q ss_pred HHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHH---HHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHH
Q 003289 579 VYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK---KALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHID 655 (833)
Q Consensus 579 ~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~---~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 655 (833)
.+...+.. -....+.....|+..+....+..=.. .....++.++++.+.++.... ..+......+
T Consensus 570 ~L~~~m~~-----~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l-------~~~~~~~lye 637 (1073)
T 3gjx_A 570 KLFEFMHE-----THDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDL-------QPQQVHTFYE 637 (1073)
T ss_dssp HHHHHTTC-----CSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTC-------CHHHHHHHHH
T ss_pred HHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhc-------CHHHHHHHHH
Confidence 66665442 12345666666766666554321000 000113344444444444332 1334455678
Q ss_pred HHHHhhhccCCcccHHHHHHHHHHHHHHHHHhhc----------CChHHHHHHHHHHH---HHHHHhhhhhhhhHHHHHH
Q 003289 656 RFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRA----------WDMRTMESLCRACK---YAVRTSKRFMGITIGAILE 722 (833)
Q Consensus 656 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~----------~~~~v~e~~~~~~~---~~~~~~~~~~~~~l~~l~~ 722 (833)
.+|.+++..+....-..+++.+|+...+-..... .|++.+..+..+++ .+...+|..+.|++..+..
T Consensus 638 av~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~ 717 (1073)
T 3gjx_A 638 AVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYL 717 (1073)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHHH
Confidence 8999888774322234556666655444332221 24554444554444 4555677777777766655
Q ss_pred HHHHHHhh----------------cCCc--cHhhhHH----HHHH-HhcCCcchhHHHHHHHHHHHHHHHHhhcccccCC
Q 003289 723 EIQGLYQQ----------------HQQP--CFLYLSS----EVIK-IFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFT 779 (833)
Q Consensus 723 ~l~~~~~~----------------~~~~--~~L~~~~----~li~-~fg~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 779 (833)
.+...|+. .+.+ -.+.++. .++. -.++.++......+++++++..++.-........
T Consensus 718 ~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~ 797 (1073)
T 3gjx_A 718 DMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAA 797 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCccc
Confidence 44444432 0111 1122222 1222 2344444455556666667766654443211123
Q ss_pred cCCchHHHHHHHHHHHHhhCCCccCC--cCCcHHHHHHHHHccc
Q 003289 780 SRPDVADDCFLLASRCIRYCPQLFIP--SSVFPSLVDCSMIGIT 821 (833)
Q Consensus 780 ~~pd~~~~~f~l~~~~~~~~p~~~~~--~~~l~~~~~~~~~~l~ 821 (833)
-+|++ +.+++.++++....+.+ +..++.+|+|++.=+.
T Consensus 798 r~~ev----L~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~ 837 (1073)
T 3gjx_A 798 REPEV----LSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMIN 837 (1073)
T ss_dssp CCTHH----HHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHS
T ss_pred ccHHH----HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHh
Confidence 44544 47777777766554432 2347777777776554
No 44
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.30 E-value=0.48 Score=54.20 Aligned_cols=136 Identities=10% Similarity=0.066 Sum_probs=87.6
Q ss_pred CCcchhhHHHHHHHHhhcccCccccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHH--HHHHHHHh
Q 003289 465 NEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILA--SVLSILTS 542 (833)
Q Consensus 465 ~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~--~~l~~l~~ 542 (833)
++-..+-.||.+++.+... +--...++.+.+.+.+-..+|.||++++..+.++.+ .+|+ .++ ..++.+..
T Consensus 123 ~n~~ir~lALr~L~~i~~~--e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~---~~p~---~~~~~~~~~~l~~ 194 (621)
T 2vgl_A 123 RNPTFMGLALHCIANVGSR--EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYR---TSPD---LVPMGDWTSRVVH 194 (621)
T ss_dssp CCHHHHHHHHHHHHHHCCH--HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHH---HCGG---GCCCCSCHHHHHH
T ss_pred CCHHHHHHHHHHhhccCCH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH---hChh---hcCchhHHHHHHH
Confidence 3444567888888887541 111223444445442223489999999999998876 3444 333 44444555
Q ss_pred ccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCC--CC------CCHhhHHHHHHHHHHHH
Q 003289 543 GMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGS--LK------VSAEDSLHLVEALSMVI 608 (833)
Q Consensus 543 ~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~--~~------l~~~~~~~l~eai~~vi 608 (833)
.+.+++ .|...|..++..+|...+..+.++++.+++.+.+++..++. .. -++--+..+++.++.+.
T Consensus 195 lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~ 269 (621)
T 2vgl_A 195 LLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYP 269 (621)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSS
T ss_pred HhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhC
Confidence 555543 49999999999999887777778888888888887654210 00 03567888888777554
No 45
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=95.95 E-value=0.093 Score=57.42 Aligned_cols=220 Identities=10% Similarity=0.048 Sum_probs=122.7
Q ss_pred CCcchhhHHHHHHHHhhccc-Cccc----cccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHH
Q 003289 465 NEWRPAEAALFCIRAISTYV-SVVE----AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSI 539 (833)
Q Consensus 465 ~~w~~~Eaal~~l~~i~e~~-~~~~----~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~ 539 (833)
.++.-++.++++++.++..- +... ...++.+++.+.. .++.++..++++++.++..-...... -.-..+++.
T Consensus 162 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~--~~~~v~~~a~~~L~~l~~~~~~~~~~-~~~~~~i~~ 238 (450)
T 2jdq_A 162 NRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFV--SDTDVLADACWALSYLSDGPNDKIQA-VIDAGVCRR 238 (450)
T ss_dssp CCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTC--CCHHHHHHHHHHHHHHTSSSHHHHHH-HHHTTTHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHCCCcHHHHH-HHHcCcHHH
Confidence 56788899999999998764 2211 3456666666542 36889999999999886521110000 000123334
Q ss_pred HHhccCCC-HHHHHHHHHHHHHHHHHhhh---hhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHH
Q 003289 540 LTSGMSTS-EDTAAAAALAFRHICDDCRK---KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVD 615 (833)
Q Consensus 540 l~~~l~~~-~~v~~~A~~al~~l~~~~~~---~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~ 615 (833)
++..+.++ ..++..|+.++.+++..... .+... .++..+.+++..+ +...+...+.+++.+.... .+.
T Consensus 239 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~l~~L~~ll~~~-----~~~vr~~a~~~L~~l~~~~-~~~ 310 (450)
T 2jdq_A 239 LVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNC--SALQSLLHLLSSP-----KESIKKEACWTISNITAGN-RAQ 310 (450)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTT--THHHHHHHHTTCS-----SHHHHHHHHHHHHHHTTSC-HHH
T ss_pred HHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHC--ccHHHHHHHHcCC-----CHHHHHHHHHHHHHHHcCC-HHH
Confidence 44445443 25999999999999865432 22211 3555566666532 3677888888998887643 222
Q ss_pred HHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHH-HHHHHHHHHHHHhhcCChHH
Q 003289 616 AKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI-QRLWPIFKAIFDIRAWDMRT 694 (833)
Q Consensus 616 ~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~il~~~~~~~~v 694 (833)
....++ ..++..+.+.+..... ..+ ..+...++.+....+ +.....++ ..++|.+..++.. .++++
T Consensus 311 ~~~~~~---~~~l~~L~~~l~~~~~-----~v~--~~a~~~L~~l~~~~~-~~~~~~l~~~~~i~~L~~ll~~--~~~~v 377 (450)
T 2jdq_A 311 IQTVID---ANIFPALISILQTAEF-----RTR--KEAAWAITNATSGGS-AEQIKYLVELGCIKPLCDLLTV--MDSKI 377 (450)
T ss_dssp HHHHHH---TTHHHHHHHHHHHSCH-----HHH--HHHHHHHHHHHHHCC-HHHHHHHHHHTCHHHHHHGGGS--SCHHH
T ss_pred HHHHHH---CCCHHHHHHHHhcCCH-----HHH--HHHHHHHHHHHcCCC-HHHHHHHHHCCCHHHHHHHhcC--CCHHH
Confidence 222221 1233334444443211 111 224455555554321 22222222 2455666655543 47889
Q ss_pred HHHHHHHHHHHHHH
Q 003289 695 MESLCRACKYAVRT 708 (833)
Q Consensus 695 ~e~~~~~~~~~~~~ 708 (833)
++.++.++..++..
T Consensus 378 ~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 378 VQVALNGLENILRL 391 (450)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999888887664
No 46
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.88 E-value=0.14 Score=60.78 Aligned_cols=222 Identities=16% Similarity=0.192 Sum_probs=134.5
Q ss_pred hHHHHHHHHhhcccCcc--ccccHHHHHhhcc-CCCC-hHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCC
Q 003289 471 EAALFCIRAISTYVSVV--EAEVMPQVMALLP-KLPQ-QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST 546 (833)
Q Consensus 471 Eaal~~l~~i~e~~~~~--~~~~l~~l~~~l~-~l~~-~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~ 546 (833)
|+|+.++.++++..... ..+++-.++..+. .+.+ ...||.++-..+..+..-+. |. -+..+++.++..+..
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~--~~---a~~~~~~~~~~~~~~ 144 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVN--PV---AIKALLPHLTNAIVE 144 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSC--GG---GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCC--HH---HHHHHHHHHHHHhcc
Confidence 99999999999877543 2233322222221 1222 46788888877777665444 33 457777777777754
Q ss_pred CH--HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHH----
Q 003289 547 SE--DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKAL---- 620 (833)
Q Consensus 547 ~~--~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l---- 620 (833)
.. ..+..|...+.++++.++..+.-.++.++..+.+.+- ....+......+++-.+...+.+.++.+.+
T Consensus 145 ~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-----d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~ 219 (986)
T 2iw3_A 145 TNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMW-----DTKKEVKAAATAAMTKATETVDNKDIERFIPSLI 219 (986)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTT-----CSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcc-----cCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHH
Confidence 32 3788999999999999988888899999988888764 244666666666666666666554433222
Q ss_pred HHhhhhhHHHHHHHHhcCCCc-----cc-----------------c--cCchhhhHHHHHHHHhhhccCCcccHHHHHHH
Q 003289 621 EMLCLPVVTPLQEIINQGPEI-----LQ-----------------K--KHPRDLTVHIDRFAYIFRYVNHPEAVADAIQR 676 (833)
Q Consensus 621 ~~l~~p~~~~l~~~~~~~~~~-----~~-----------------~--~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 676 (833)
.-+..| ....+++....+. .+ . ..-|.....++.|++++ ..|..+.+++.+
T Consensus 220 ~~~~~p--~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv---~~~~~~~~f~~~ 294 (986)
T 2iw3_A 220 QCIADP--TEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLV---EDPQVIAPFLGK 294 (986)
T ss_dssp HHHHCT--THHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTC---CCHHHHHHHHTT
T ss_pred HHhcCh--hhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhc---CCHHHHhhhhhh
Confidence 222222 1222222221110 00 0 00112222344444443 356777888888
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Q 003289 677 LWPIFKAIFDIRAWDMRTMESLCRACKYAVRT 708 (833)
Q Consensus 677 ~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~ 708 (833)
++|-+..+.+. ..+|+++|.+-+++....+.
T Consensus 295 l~p~~~~~~~~-~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 295 LLPGLKSNFAT-IADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp THHHHHHHTTT-CCSHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHhhc-cCCHHHHHHHHHHHHHHHHh
Confidence 89988887655 46799998887777765554
No 47
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=95.48 E-value=5.6 Score=46.76 Aligned_cols=251 Identities=12% Similarity=0.063 Sum_probs=132.1
Q ss_pred cCCCHHHHHHHHHHHHHHhc----------ChhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCCCCChhhHH-HHH
Q 003289 16 HHPDDAVRMQADRWLQDFQH----------TIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVR-GLQ 84 (833)
Q Consensus 16 ~~~d~~~r~~A~~~L~~~q~----------s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~-~lr 84 (833)
...|+..|..|-..|..+-. .+++......+|.+ +.+.++|..|+..|++. ... .+.+. ..+
T Consensus 160 ~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~-~~d~~vr~~Aa~aL~~L-s~~-----~~~~~~i~~ 232 (780)
T 2z6g_A 160 NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTSGTLHNL-SHH-----REGLLAIFK 232 (780)
T ss_dssp HCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH-HTS-----HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcC-CCCHHHHHHHHHHHHHH-hCC-----chhHHHHHH
Confidence 46788999999998888765 44666666777765 45788999999999984 332 22222 223
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhccccccC---CccchHHHHHhcCCCC-CcHHHHHHHHhhchhhccccc
Q 003289 85 DSLNTLLKKFH-KGPPKVRTQISIAVAALAVHISAEDWG---GGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVFNYK 159 (833)
Q Consensus 85 ~~Ll~~l~~~~-~~~~~v~~kL~~~la~l~~~~~~~~Wp---~~~~~~~l~~~~~~~~-~~~~~~L~iL~~l~Ee~~~~~ 159 (833)
...+..+..+. .+...++...+.+|..++..... ... +.+.++.+++.+.+.. ......+..|..++..
T Consensus 233 ~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~-~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~----- 306 (780)
T 2z6g_A 233 SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG----- 306 (780)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT-HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-----
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChh-hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcC-----
Confidence 33555555533 34567888888888888764321 110 0125677777776532 2234444555544321
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhccCCCCccccccchhHHHHHhccCCc--chHH
Q 003289 160 IAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE--ILSE 237 (833)
Q Consensus 160 ~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~~~~L~~~--~~~~ 237 (833)
.++-|..+.+ ....+.++.++...- .......+..++...... .-....+.....++.++..|.++ ++..
T Consensus 307 ---~~e~~~~i~~--~~~i~~Lv~lL~~~~-~~~~~~~a~~aL~~Ls~~--~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~ 378 (780)
T 2z6g_A 307 ---NQESKLIILA--SGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVC--SSNKPAIVEAGGMQALGLHLTDPSQRLVQ 378 (780)
T ss_dssp ---CHHHHHHHHT--TTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTS--TTHHHHHHHTTHHHHHGGGTTCSCHHHHH
T ss_pred ---ChHHHHHHHH--cCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcC--hHHHHHHHHhchHHHHHHHHcCCchHHHH
Confidence 0111111111 122344444443221 112333344444433321 00011233455677888888654 5677
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhh
Q 003289 238 ASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGD 301 (833)
Q Consensus 238 ~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~~ 301 (833)
.|+.+|..+....... ... ..+++.++.+ + ...|.+.....+..+..++.
T Consensus 379 ~a~~~L~~L~~~~~~~-----~~~----~~~i~~Lv~l---L--~~~d~~vr~~A~~aL~~L~~ 428 (780)
T 2z6g_A 379 NCLWTLRNLSDAATKQ-----EGM----EGLLGTLVQL---L--GSDDINVVTCAAGILSNLTC 428 (780)
T ss_dssp HHHHHHHHHHTTCTTC-----SCC----HHHHHHHHHH---T--TCSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhccchhh-----hhh----hhHHHHHHHH---H--cCCCHHHHHHHHHHHHHHHh
Confidence 7888888887544211 011 2233333322 1 13455566666677776654
No 48
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=95.36 E-value=3.3 Score=45.92 Aligned_cols=218 Identities=12% Similarity=0.144 Sum_probs=117.0
Q ss_pred CCCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHH----
Q 003289 464 HNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILA---- 534 (833)
Q Consensus 464 ~~~w~~~Eaal~~l~~i~e~~~~~-----~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~---- 534 (833)
..+...++.++++++.+++.-... ....++.+++.+.. .++.++..++.++|..+.. ++. .-.
T Consensus 243 ~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~al~aL~nl~~~---~~~---~~~~i~~ 314 (510)
T 3ul1_B 243 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA--TELPIVTPALRAIGNIVTG---TDE---QTQKVID 314 (510)
T ss_dssp CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC--SCHHHHHHHHHHHHHHTTS---CHH---HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC--CChhhhhHHHHHHHHhhcC---CHH---HHHHHhh
Confidence 345567888999999988754321 23456777776653 3578899999999986531 111 111
Q ss_pred -HHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCH-HHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcC
Q 003289 535 -SVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYL-DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 611 (833)
Q Consensus 535 -~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l-~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~ 611 (833)
.+++.+...+.+++ .++..|+.++.+++........... ..++..+..++.. -+.+.+.....+++.++..-
T Consensus 315 ~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~-----~~~~v~~~Aa~aL~Nl~~~~ 389 (510)
T 3ul1_B 315 AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK-----ADFKTQKEAAWAITNYTSGG 389 (510)
T ss_dssp TTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS-----SCHHHHHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHHccC
Confidence 12223334445543 5999999999999854333221111 1234444445543 24678888888999888765
Q ss_pred ChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCC---cccHHHHHHH--HHHHHHHHHH
Q 003289 612 PQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH---PEAVADAIQR--LWPIFKAIFD 686 (833)
Q Consensus 612 ~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~---~~~~~~~~~~--~~~~l~~il~ 686 (833)
..+.....++ ...+..|.+++...+ .+-....++.|..+++.... .+.....+++ .+..++.+
T Consensus 390 ~~~~~~~L~~---~g~i~~L~~LL~~~d-------~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L-- 457 (510)
T 3ul1_B 390 TVEQIVYLVH---CGIIEPLMNLLSAKD-------TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL-- 457 (510)
T ss_dssp CHHHHHHHHH---TTCHHHHHHGGGCSC-------HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHG--
T ss_pred CHHHHHHHHH---CCCHHHHHHHhcCCC-------HHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHH--
Confidence 4443322221 123333444444321 12223356777766654321 1222222332 23333332
Q ss_pred hhcCChHHHHHHHHHHHHHH
Q 003289 687 IRAWDMRTMESLCRACKYAV 706 (833)
Q Consensus 687 ~~~~~~~v~e~~~~~~~~~~ 706 (833)
....+.+|.+.+..++.+.+
T Consensus 458 q~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 458 QRHENESVYKASLNLIEKYF 477 (510)
T ss_dssp GGCSSHHHHHHHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHHHHHHC
Confidence 12356788887777766543
No 49
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=95.21 E-value=5 Score=44.66 Aligned_cols=221 Identities=13% Similarity=0.140 Sum_probs=114.2
Q ss_pred CCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHH
Q 003289 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSI 539 (833)
Q Consensus 465 ~~w~~~Eaal~~l~~i~e~~~~~-----~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~ 539 (833)
.+-.-.+.++++++.+++.-... ....++.++..+.. .++.++..++.++|..+..-..... .-.-..+++.
T Consensus 263 ~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~-~i~~~g~l~~ 339 (529)
T 3tpo_A 263 NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA--TELPIVTPALRAIGNIVTGTDEQTQ-KVIDAGALAV 339 (529)
T ss_dssp SCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC--SCHHHHHHHHHHHHHHTTSCHHHHH-HHHHTTGGGG
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcC--CChhHHHHHHHHHHHHHccchHHHH-HHhhcccHHH
Confidence 34456778889998888754321 23456777776653 3678888999999877531110000 0000112233
Q ss_pred HHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCH-HHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHH
Q 003289 540 LTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYL-DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK 617 (833)
Q Consensus 540 l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l-~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~ 617 (833)
+...+.+++ .++..|+.++.+++........... ..++..+..++.. -+.+.+.....+++.++..-..+...
T Consensus 340 L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~-----~~~~v~~~A~~aL~nl~~~~~~~~~~ 414 (529)
T 3tpo_A 340 FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK-----ADFKTQKAAAWAITNYTSGGTVEQIV 414 (529)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHS-----SCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcC-----CCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 334445443 4999999999999864333221111 1234444444443 23677888888999888765444332
Q ss_pred HHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCC---cccHHHHHHH--HHHHHHHHHHhhcCCh
Q 003289 618 KALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH---PEAVADAIQR--LWPIFKAIFDIRAWDM 692 (833)
Q Consensus 618 ~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~---~~~~~~~~~~--~~~~l~~il~~~~~~~ 692 (833)
...+ ...+..|-+++...+ .+-....++.|..+++.... .+.+...+++ .+..++.+. ...+.
T Consensus 415 ~l~~---~g~i~~L~~LL~~~d-------~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq--~~~n~ 482 (529)
T 3tpo_A 415 YLVH---CGIIEPLMNLLSAKD-------TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ--RHENE 482 (529)
T ss_dssp HHHH---TTCHHHHHHGGGCSC-------HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGG--GCSSH
T ss_pred HHHH---CcCHHHHHHHhcCCC-------HHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHH--cCCCH
Confidence 2221 123333344444321 12223456677766654321 1222222222 122222221 23567
Q ss_pred HHHHHHHHHHHHH
Q 003289 693 RTMESLCRACKYA 705 (833)
Q Consensus 693 ~v~e~~~~~~~~~ 705 (833)
+|.+.+..++.+-
T Consensus 483 ~i~~~A~~iie~y 495 (529)
T 3tpo_A 483 SVYKASLNLIEKY 495 (529)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888877776653
No 50
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=95.11 E-value=0.49 Score=46.63 Aligned_cols=218 Identities=13% Similarity=0.111 Sum_probs=121.5
Q ss_pred CCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhH-HHHHH
Q 003289 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVLS 538 (833)
Q Consensus 465 ~~w~~~Eaal~~l~~i~e~~~~~-----~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l-~~~l~ 538 (833)
.+....+.++++++.++..-... +...++.+++.+.+ .++.++..++.+++.++..-..+.. ... ..+++
T Consensus 14 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~i~ 89 (252)
T 4hxt_A 14 TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS--TDSEVQKEAARALANIASGPDEAIK--AIVDAGGVE 89 (252)
T ss_dssp SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCChHHHH--HHHHCCCHH
Confidence 34666788889988887664422 12456666666653 2589999999999988642111000 000 12344
Q ss_pred HHHhccCCC-HHHHHHHHHHHHHHHHH---hhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChH
Q 003289 539 ILTSGMSTS-EDTAAAAALAFRHICDD---CRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV 614 (833)
Q Consensus 539 ~l~~~l~~~-~~v~~~A~~al~~l~~~---~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~ 614 (833)
.++..+.++ ..++..|+.++.+++.. .+..+.. ...+..+.+++.. -+.+.+.....+++.+...-+ +
T Consensus 90 ~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~~l~~-----~~~~~~~~a~~~L~~l~~~~~-~ 161 (252)
T 4hxt_A 90 VLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD--AGGVEVLVKLLTS-----TDSEVQKEAARALANIASGPD-E 161 (252)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHTTC-----SCHHHHHHHHHHHHHHTTSCH-H
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHHcCCH-H
Confidence 555555544 25999999999999943 3333331 1234445555543 236678888888888876532 2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHH-HHHHHHHHHHHHhhcCChH
Q 003289 615 DAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI-QRLWPIFKAIFDIRAWDMR 693 (833)
Q Consensus 615 ~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~il~~~~~~~~ 693 (833)
......+ ...+..+.+++.... ..-...++..++.+... .++....+. ...++.+..++. ..+++
T Consensus 162 ~~~~~~~---~~~i~~L~~ll~~~~-------~~v~~~a~~~L~~l~~~--~~~~~~~l~~~~~i~~L~~ll~--~~~~~ 227 (252)
T 4hxt_A 162 AIKAIVD---AGGVEVLVKLLTSTD-------SEVQKEAARALANIASG--PTSAIKAIVDAGGVEVLQKLLT--STDSE 227 (252)
T ss_dssp HHHHHHH---TTHHHHHHHHTTCSC-------HHHHHHHHHHHHHHTTS--BHHHHHHHHHTTHHHHHHHGGG--CSCHH
T ss_pred HHHHHHH---CcCHHHHHHHHCCCC-------HHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHC--CCcHH
Confidence 2121111 234444555554321 11112355566665542 122111111 245565555554 35678
Q ss_pred HHHHHHHHHHHHHHH
Q 003289 694 TMESLCRACKYAVRT 708 (833)
Q Consensus 694 v~e~~~~~~~~~~~~ 708 (833)
+.+.++.++..+...
T Consensus 228 v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 228 VQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999888886654
No 51
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=94.54 E-value=3.5 Score=46.00 Aligned_cols=298 Identities=11% Similarity=0.120 Sum_probs=153.0
Q ss_pred CCCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhccCCC---ChHHHHHHHHHHHHhchHHHhhCCCChhhHHH
Q 003289 464 HNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLP---QQPQLLQTVCLTIGAYSKWFDAASSDPSILAS 535 (833)
Q Consensus 464 ~~~w~~~Eaal~~l~~i~e~~~~~-----~~~~l~~l~~~l~~l~---~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~ 535 (833)
+.+-.-.|.|+++++.|+..-+.. ....++.++..+..-. ....+.+.++++++.++..-...+. ......
T Consensus 173 s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~-~~~~~~ 251 (529)
T 3tpo_A 173 SPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPP-LDAVEQ 251 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCC-HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhh-HHHHhh
Confidence 345567899999999998643221 2345677777764321 1345677778888776542222221 134567
Q ss_pred HHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhh---hhh--cCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHh
Q 003289 536 VLSILTSGMSTSE-DTAAAAALAFRHICDDCRK---KLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVIT 609 (833)
Q Consensus 536 ~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~---~l~--~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~ 609 (833)
+++.|...+.++. .++..|+.++..++..... .+. ..++.++.. +.. -+...+.....+++.++.
T Consensus 252 ~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~l----L~~-----~~~~v~~~a~~aL~nl~~ 322 (529)
T 3tpo_A 252 ILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKL----LGA-----TELPIVTPALRAIGNIVT 322 (529)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHH----HTC-----SCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHH----hcC-----CChhHHHHHHHHHHHHHc
Confidence 7788877776653 5999999999999864332 222 344544443 442 235678888889998876
Q ss_pred cCChHHHHHHHH-HhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHH-HHHHHHHHHHHHh
Q 003289 610 ELPQVDAKKALE-MLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI-QRLWPIFKAIFDI 687 (833)
Q Consensus 610 ~~~~~~~~~~l~-~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~il~~ 687 (833)
.- ++.....+. ..+.+ +..++..... ..+ ..+..+|+.+..+. +.....+. ..++|.+..++..
T Consensus 323 ~~-~~~~~~i~~~g~l~~----L~~LL~~~~~-----~i~--~~a~~aL~nl~~~~--~~~~~~v~~~g~i~~Lv~lL~~ 388 (529)
T 3tpo_A 323 GT-DEQTQKVIDAGALAV----FPSLLTNPKT-----NIQ--KEATWTMSNITAGR--QDQIQQVVNHGLVPFLVGVLSK 388 (529)
T ss_dssp SC-HHHHHHHHHTTGGGG----HHHHTTCSSH-----HHH--HHHHHHHHHHHTSC--HHHHHHHHHTTHHHHHHHHHHS
T ss_pred cc-hHHHHHHhhcccHHH----HHHHHcCCCH-----HHH--HHHHHHHHHHhccc--HHHHHHHHhcCcHHHHHHHhcC
Confidence 53 222222221 22233 3344443211 111 12344455444321 11122222 2566777666653
Q ss_pred hcCChHHHHHHHHHHHHHHHHhhh----hh--hhhHHHHHHHHHHHHhhcCC----ccHhhhHHHHHHHhcCCcchhHHH
Q 003289 688 RAWDMRTMESLCRACKYAVRTSKR----FM--GITIGAILEEIQGLYQQHQQ----PCFLYLSSEVIKIFGSDPSCASYL 757 (833)
Q Consensus 688 ~~~~~~v~e~~~~~~~~~~~~~~~----~~--~~~l~~l~~~l~~~~~~~~~----~~~L~~~~~li~~fg~~~~~~~~~ 757 (833)
.+.++...++.++..+...-.+ ++ ...++.+++.+. .+. ...|+.+..+.....+.. -.+.+
T Consensus 389 --~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~-----~~d~~i~~~~L~aL~nil~~~~~~~-~~~~~ 460 (529)
T 3tpo_A 389 --ADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS-----AKDTKIIQVILDAISNIFQAAEKLG-ETEKL 460 (529)
T ss_dssp --SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGG-----CSCHHHHHHHHHHHHHHHHHHHTTT-CHHHH
T ss_pred --CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHHhHhcc-ChHHH
Confidence 5678888888888876543211 11 134555555431 121 234455555554332221 22334
Q ss_pred HHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHH
Q 003289 758 HNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCI 796 (833)
Q Consensus 758 ~~~~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~~ 796 (833)
..+++..-. +..+...+ ..++.|+.+..+.++.++.
T Consensus 461 ~~~iee~gg--l~~ie~Lq-~~~n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 461 SIMIEECGG--LDKIEALQ-RHENESVYKASLNLIEKYF 496 (529)
T ss_dssp HHHHHHTTC--HHHHTGGG-GCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCc--HHHHHHHH-cCCCHHHHHHHHHHHHHHC
Confidence 444443211 12222211 2456666666666665553
No 52
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=94.20 E-value=3.1 Score=46.16 Aligned_cols=298 Identities=12% Similarity=0.108 Sum_probs=152.3
Q ss_pred CCCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhccCCC---ChHHHHHHHHHHHHhchHHHhhCCCChhhHHH
Q 003289 464 HNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLP---QQPQLLQTVCLTIGAYSKWFDAASSDPSILAS 535 (833)
Q Consensus 464 ~~~w~~~Eaal~~l~~i~e~~~~~-----~~~~l~~l~~~l~~l~---~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~ 535 (833)
+.+..-+|.|+++++.++..-+.. ....++.++..+..-. ....+.+.++++++..+..-...+. ......
T Consensus 154 s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~-~~~~~~ 232 (510)
T 3ul1_B 154 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPP-LDAVEQ 232 (510)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCC-HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhH-HHHHHh
Confidence 355677899999999998653321 2345677777765321 1345677778888776542221121 124567
Q ss_pred HHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhh---hhh--cCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHh
Q 003289 536 VLSILTSGMSTSE-DTAAAAALAFRHICDDCRK---KLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVIT 609 (833)
Q Consensus 536 ~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~---~l~--~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~ 609 (833)
+++.+...+.++. .++..|+.++.+++..... .+. ..++.++. ++.. -+...+.....+++.+..
T Consensus 233 ~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~----lL~~-----~~~~v~~~al~aL~nl~~ 303 (510)
T 3ul1_B 233 ILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK----LLGA-----TELPIVTPALRAIGNIVT 303 (510)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHH----HHTC-----SCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhh----hhcC-----CChhhhhHHHHHHHHhhc
Confidence 7777877776653 5999999999999864332 221 34444444 3443 235678888888888876
Q ss_pred cCChHHHHHHHH-HhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHH-HHHHHHHHHHHHh
Q 003289 610 ELPQVDAKKALE-MLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI-QRLWPIFKAIFDI 687 (833)
Q Consensus 610 ~~~~~~~~~~l~-~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~il~~ 687 (833)
.- ++.....+. ..+.++ ..++.... . ..+ ..+...++.+.... +.-...+. ..++|.+..++..
T Consensus 304 ~~-~~~~~~i~~~g~l~~L----~~LL~~~~----~-~v~--~~A~~aL~nl~a~~--~~~~~~v~~~g~i~~Lv~lL~~ 369 (510)
T 3ul1_B 304 GT-DEQTQKVIDAGALAVF----PSLLTNPK----T-NIQ--KEATWTMSNITAGR--QDQIQQVVNHGLVPFLVGVLSK 369 (510)
T ss_dssp SC-HHHHHHHHHTTGGGGC----C-CTTCSS----H-HHH--HHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHHHHS
T ss_pred CC-HHHHHHHhhccchHHH----HHHhcCCC----H-HHH--HHHHHHHHHHHcCc--HHHHHHHHhcCCHHHHHHHHcC
Confidence 53 222222221 122222 22222111 0 111 12344555544321 11112222 2566777666653
Q ss_pred hcCChHHHHHHHHHHHHHHHHhhh----hh--hhhHHHHHHHHHHHHhhcC---CccHhhhHHHHHHHhcCCcchhHHHH
Q 003289 688 RAWDMRTMESLCRACKYAVRTSKR----FM--GITIGAILEEIQGLYQQHQ---QPCFLYLSSEVIKIFGSDPSCASYLH 758 (833)
Q Consensus 688 ~~~~~~v~e~~~~~~~~~~~~~~~----~~--~~~l~~l~~~l~~~~~~~~---~~~~L~~~~~li~~fg~~~~~~~~~~ 758 (833)
.+.++...++.++..+...-.+ ++ ...++.+++.+ .... ....|+.+..+.....+.. ..+.+.
T Consensus 370 --~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL----~~~d~~i~~~~L~aL~nil~~~~~~~-~~~~~~ 442 (510)
T 3ul1_B 370 --ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL----SAKDTKIIQVILDAISNIFQAAEKLG-ETEKLS 442 (510)
T ss_dssp --SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGG----GCSCHHHHHHHHHHHHHHHHHHHTTT-CHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHhHhcc-chHHHH
Confidence 5678888888888876543111 11 13345555543 1111 1234555555554333322 233444
Q ss_pred HHHHHHHH-HHHHhhcccccCCcCCchHHHHHHHHHHHH
Q 003289 759 NLIEALFK-RTTCLLTSIEEFTSRPDVADDCFLLASRCI 796 (833)
Q Consensus 759 ~~~~~l~~-~~~~~l~~~~~~~~~pd~~~~~f~l~~~~~ 796 (833)
.+++..-+ ..+..|+ ..+++++.+..+.++.++.
T Consensus 443 ~~iee~ggl~~ie~Lq----~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 443 IMIEECGGLDKIEALQ----RHENESVYKASLNLIEKYF 477 (510)
T ss_dssp HHHHHTTHHHHHHHGG----GCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHcCcHHHHHHHH----cCCCHHHHHHHHHHHHHHC
Confidence 45544211 1122233 2456667666666666553
No 53
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=93.92 E-value=6.2 Score=42.21 Aligned_cols=268 Identities=11% Similarity=0.084 Sum_probs=133.6
Q ss_pred hHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHH
Q 003289 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTA 583 (833)
Q Consensus 505 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~ 583 (833)
++..++-+..+|.+|.+.| |+ +-..+++.++.-..+.+ .+|..|-+.|-.||.+ .+++-+.+.+-++
T Consensus 41 ~~k~K~LaaQ~I~kffk~F---P~---l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Ql 108 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHF---PE---LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQL 108 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGC---GG---GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhC---hh---hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHH
Confidence 4677777778887765444 43 56677776665554433 3777777777777755 4466666666666
Q ss_pred hcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhh-------------------------------hHHHHH
Q 003289 584 VNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLP-------------------------------VVTPLQ 632 (833)
Q Consensus 584 l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p-------------------------------~~~~l~ 632 (833)
++.. +..+...+=.++..++..-|.......+.++... +...+.
T Consensus 109 Lqtd-----d~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ik 183 (507)
T 3u0r_A 109 LQTD-----DSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESK 183 (507)
T ss_dssp TTCC-----CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHH
T ss_pred Hhcc-----chHHHHHHHHHHHHHHhcChHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHH
Confidence 6642 2445555555555555554322222222222221 111111
Q ss_pred HHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHh---h-cCChHHHHHHHHHHHHHHHH
Q 003289 633 EIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDI---R-AWDMRTMESLCRACKYAVRT 708 (833)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~---~-~~~~~v~e~~~~~~~~~~~~ 708 (833)
++++.-. .. ....+-.+++..+....+ .-.+++.+++....+. | ..|.+.+++...|+++++-.
T Consensus 184 K~L~DVT-------~~----EF~L~m~lL~~lkl~~t~-~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~ 251 (507)
T 3u0r_A 184 KVLEDVT-------GE----EFVLFMKILSGLKSLQTV-SGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPL 251 (507)
T ss_dssp HHTTSCC-------HH----HHHHHHHHHHTSGGGSSH-HHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGG
T ss_pred HHhcccc-------HH----HHHHHHHHHHhcccccCc-hHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 1111000 00 111111222222211111 2236666766665432 3 26889999999999988765
Q ss_pred hhh--hhhhhHHHHHHHHHHHHhhcCCc-----cHhhhHHHHHHHh---cCCcchhHHHHHHHHHHHHHHHHhhccccc-
Q 003289 709 SKR--FMGITIGAILEEIQGLYQQHQQP-----CFLYLSSEVIKIF---GSDPSCASYLHNLIEALFKRTTCLLTSIEE- 777 (833)
Q Consensus 709 ~~~--~~~~~l~~l~~~l~~~~~~~~~~-----~~L~~~~~li~~f---g~~~~~~~~~~~~~~~l~~~~~~~l~~~~~- 777 (833)
+.. ....|+..+++.++-.+..-+.+ -=|+++..+.+.- |..+...+.+..++. .....+-....
T Consensus 252 FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~----~L~~ymP~~p~~ 327 (507)
T 3u0r_A 252 FSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFD----KLLEYMPLPPEE 327 (507)
T ss_dssp CBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHH----HHHTTSCCCC--
T ss_pred hccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHH----HHHHHCCCCccc
Confidence 432 33455666666655555543222 2355655555533 323333334333333 33223221110
Q ss_pred -------CCcCCch----HHHHHHHHHHHHhhCCCccCC
Q 003289 778 -------FTSRPDV----ADDCFLLASRCIRYCPQLFIP 805 (833)
Q Consensus 778 -------~~~~pd~----~~~~f~l~~~~~~~~p~~~~~ 805 (833)
.++.|.+ ++++.-.++++.++.|..+..
T Consensus 328 ~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~l~e 366 (507)
T 3u0r_A 328 AENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPDFLTA 366 (507)
T ss_dssp ------------CCCHHHHHHHHHHHHHHHTTCTHHHHC
T ss_pred ccccccccccCcccchhHHHHHHHHHHHHhhhChhhhcc
Confidence 0133554 566666678899999988754
No 54
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=93.90 E-value=5.8 Score=39.66 Aligned_cols=213 Identities=12% Similarity=0.046 Sum_probs=118.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHH
Q 003289 7 VKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDS 86 (833)
Q Consensus 7 v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~~lr~~ 86 (833)
+...+..| .++|+..|..|-..|.++. .+++......+|.+ .++.+|..|+..|... .. +.+....+-..
T Consensus 25 i~~L~~~L-~~~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~d--~~~~vR~~A~~aL~~l-~~-----~~~~~~~l~~~ 94 (280)
T 1oyz_A 25 DDELFRLL-DDHNSLKRISSARVLQLRG-GQDAVRLAIEFCSD--KNYIRRDIGAFILGQI-KI-----CKKCEDNVFNI 94 (280)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHHC-CHHHHHHHHHHHTC--SSHHHHHHHHHHHHHS-CC-----CTTTHHHHHHH
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHccC-CchHHHHHHHHHcC--CCHHHHHHHHHHHHHh-cc-----ccccchHHHHH
Confidence 34445555 5678999999999998886 78888888899975 4678999999888653 11 11222222222
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-CCcHHHHHHHHhhchhh-cccc---cc-
Q 003289 87 LNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-PEFVPGFLELLTVLPEE-VFNY---KI- 160 (833)
Q Consensus 87 Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~~-~~~~~~~L~iL~~l~Ee-~~~~---~~- 160 (833)
|.+.+.+ .....||...+.+|+.+....+. ..+. .++.+...+++. +.........|..+..+ .... .+
T Consensus 95 L~~~~~~--d~~~~vr~~a~~aL~~l~~~~~~-~~~~--~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~ 169 (280)
T 1oyz_A 95 LNNMALN--DKSACVRATAIESTAQRCKKNPI-YSPK--IVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLK 169 (280)
T ss_dssp HHHHHHH--CSCHHHHHHHHHHHHHHHHHCGG-GHHH--HHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHT
T ss_pred HHHHHhc--CCCHHHHHHHHHHHHHHhccCCc-ccHH--HHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHc
Confidence 3222222 34677999999999888654321 1223 556666665532 22223344444444321 0000 00
Q ss_pred cCChhHHHHHHHHHHHH---HHHHHHHHHhhhhh--hHHHHHHHHHHHHHhhccCCCCccccccchhHHHHHhccCCcch
Q 003289 161 AARPERRRQFEKELTSQ---MEVALSTLTACLHI--NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEIL 235 (833)
Q Consensus 161 ~~~~~~r~~l~~~l~~~---~~~vl~~l~~~l~~--~~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~~~~L~~~~~ 235 (833)
.-...-|...-..|... .+.+++.+...+.+ +.++..++.++...- ....++.+...+.++++
T Consensus 170 d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~------------~~~~~~~L~~~l~d~~v 237 (280)
T 1oyz_A 170 DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK------------DKRVLSVLCDELKKNTV 237 (280)
T ss_dssp CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT------------CGGGHHHHHHHHTSSSC
T ss_pred CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC------------CHhhHHHHHHHhcCccH
Confidence 00122233333333222 34555666666654 356666666664321 13466667777777778
Q ss_pred HHHHHHHHHHH
Q 003289 236 SEASVNVISEL 246 (833)
Q Consensus 236 ~~~a~~~l~~i 246 (833)
+..|+.+|..+
T Consensus 238 r~~a~~aL~~i 248 (280)
T 1oyz_A 238 YDDIIEAAGEL 248 (280)
T ss_dssp CHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 88887777665
No 55
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=93.27 E-value=5 Score=40.74 Aligned_cols=129 Identities=15% Similarity=0.150 Sum_probs=75.7
Q ss_pred hhHHHHHHHHhhcccCccc----cccHHHHHh-hccCCCChHHHHHHHHHHHHhchHHHhhCCCCh------hhHHHHHH
Q 003289 470 AEAALFCIRAISTYVSVVE----AEVMPQVMA-LLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDP------SILASVLS 538 (833)
Q Consensus 470 ~Eaal~~l~~i~e~~~~~~----~~~l~~l~~-~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~------~~l~~~l~ 538 (833)
++.|+..|..+.+...... ...++.++. .|.+ .++.++..+++++|..+. .+|... ..++.++.
T Consensus 57 k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s--~~~~vr~~Aa~~Lg~ia~---~n~~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 57 REGALELLADLCENMDNAADFCQLSGMHLLVGRYLEA--GAAGLRWRAAQLIGTCSQ---NVAAIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTC--SSHHHHHHHHHHHHHHHT---TCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHHHHh---CCHHHHHHHHHCCCHHHHHH
Confidence 4445555555555443211 234666776 5442 378999999999998763 122100 14555555
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhcCHH-HHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhc
Q 003289 539 ILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLD-GLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (833)
Q Consensus 539 ~l~~~l~~~~~v~~~A~~al~~l~~~~~~~l~~~l~-~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (833)
.+-+ +.+..++..|++|+.++|.........+.. ..+..+..++.. -+...+....-+++++...
T Consensus 132 LL~~--~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~-----~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 132 LLDR--DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ-----QVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp HHHH--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS-----SCHHHHHHHHHHHHHHHHH
T ss_pred HHcc--CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHHhC
Confidence 5532 112349999999999999754432211111 234444445543 2467888888999988877
No 56
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.23 E-value=0.96 Score=44.94 Aligned_cols=137 Identities=10% Similarity=0.105 Sum_probs=88.6
Q ss_pred CCCcchhhhhHHHHHHHHHHHhhcccccccCcccchHHHHHHHHHHhHHH-HHHHHHHHHhhccCCCCCCCCChhhhHHh
Q 003289 327 HPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSA-YESLVSLVSFRVQYPQDYQDLSLEDLKEF 405 (833)
Q Consensus 327 ~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ll~~l~~k~~~p~d~~~~~~d~~~~f 405 (833)
..+..+...++++...+.+.+... .|. +.++ ...+++.+++|+.-+- +.
T Consensus 98 d~N~~v~~~~L~~L~~l~~~l~~~-~y~------------------~~~~ea~~~lP~LveKlGd~k----------~~- 147 (266)
T 2of3_A 98 ETNPAALIKVLELCKVIVELIRDT-ETP------------------MSQEEVSAFVPYLLLKTGEAK----------DN- 147 (266)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHT-TCC------------------CCHHHHHHHHHHHHHGGGCSS----------HH-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhc-ccc------------------chHHHHHHHHHHHHHHhCCCh----------HH-
Confidence 346678888899888777766542 121 1111 2356667777773321 22
Q ss_pred HhhhhcccccCCccchhhhhhhchhHHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccC
Q 003289 406 KHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVS 485 (833)
Q Consensus 406 ~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~ 485 (833)
+|.. +.+++..++.+.++..+..++.+.+. +.+|+.+|.++..+.++-+...
T Consensus 148 --vR~~-----------------~r~il~~l~~v~~~~~v~~~l~~g~k---------sKN~R~R~e~l~~l~~li~~~G 199 (266)
T 2of3_A 148 --MRTS-----------------VRDIVNVLSDVVGPLKMTPMLLDALK---------SKNARQRSECLLVIEYYITNAG 199 (266)
T ss_dssp --HHHH-----------------HHHHHHHHHHHHCHHHHHHHHHHGGG---------CSCHHHHHHHHHHHHHHHHHHC
T ss_pred --HHHH-----------------HHHHHHHHHHHCCHHHHHHHHHHHHc---------cCCHHHHHHHHHHHHHHHHhcC
Confidence 4655 66777777777777666665544321 5789999999999998877655
Q ss_pred ccccccH---HHHHhhccCCCChHHHHHHHHHHHHhchHHH
Q 003289 486 VVEAEVM---PQVMALLPKLPQQPQLLQTVCLTIGAYSKWF 523 (833)
Q Consensus 486 ~~~~~~l---~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l 523 (833)
......+ +.+...+.. .++.||.+++.++.....+.
T Consensus 200 ~~~~~~l~~~~~ia~ll~D--~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 200 ISPLKSLSVEKTVAPFVGD--KDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp SGGGGGGCHHHHHGGGGGC--SSHHHHHHHHHHHHHHHHHH
T ss_pred CCccccccchHHHHHHHcC--CCHHHHHHHHHHHHHHHHHh
Confidence 4434455 555555543 37899999999998766544
No 57
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=93.23 E-value=1.4 Score=43.34 Aligned_cols=216 Identities=12% Similarity=0.080 Sum_probs=114.9
Q ss_pred CCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhH-HHHHH
Q 003289 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVLS 538 (833)
Q Consensus 465 ~~w~~~Eaal~~l~~i~e~~~~~-----~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l-~~~l~ 538 (833)
.+......++.++..+...-.+. +...++.+++.+.. .++.++..++.+++.++.--..+.. ... ..+++
T Consensus 24 ~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~i~~~g~i~ 99 (252)
T 4db8_A 24 DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQ--AVIDAGALP 99 (252)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCHHHHH--HHHHcCCHH
Confidence 45566778888886544331111 13456667776653 2488999999999988742111100 011 12455
Q ss_pred HHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhc-CHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHH
Q 003289 539 ILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCG-YLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDA 616 (833)
Q Consensus 539 ~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~-~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~ 616 (833)
.++..+.+++ .++..|+.++.+++......... .-...+..+.+++.. -+.+.+.....+++.+...-+ +..
T Consensus 100 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~-~~~ 173 (252)
T 4db8_A 100 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-----PNEQILQEALWALSNIASGGN-EQI 173 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-----SCHHHHHHHHHHHHHHTTSCH-HHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC-----CCHHHHHHHHHHHHHHHcCCh-HHH
Confidence 5555555442 49999999999998654332110 111244555555553 246678888888888876532 221
Q ss_pred HHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHHH-HHHHHHHHHHHhhcCChHHH
Q 003289 617 KKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQ-RLWPIFKAIFDIRAWDMRTM 695 (833)
Q Consensus 617 ~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~l~~il~~~~~~~~v~ 695 (833)
..... ...+..+.+++.... ..-...++..++.+... .++....+.+ ..++.+..++. ..++++.
T Consensus 174 ~~~~~---~~~i~~L~~ll~~~~-------~~v~~~a~~~L~~l~~~--~~~~~~~~~~~g~i~~L~~ll~--~~~~~v~ 239 (252)
T 4db8_A 174 QAVID---AGALPALVQLLSSPN-------EQILQEALWALSNIASG--GNEQKQAVKEAGALEKLEQLQS--HENEKIQ 239 (252)
T ss_dssp HHHHH---TTCHHHHHHGGGCSS-------HHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHTTTT--CSSSHHH
T ss_pred HHHHH---CCCHHHHHHHHCCCC-------HHHHHHHHHHHHHHhcC--CHHHHHHHHHCCcHHHHHHHhC--CCCHHHH
Confidence 11111 234444455554321 11122355666665532 1222222222 34555554443 3467888
Q ss_pred HHHHHHHHH
Q 003289 696 ESLCRACKY 704 (833)
Q Consensus 696 e~~~~~~~~ 704 (833)
+.++.++..
T Consensus 240 ~~A~~~L~~ 248 (252)
T 4db8_A 240 KEAQEALEK 248 (252)
T ss_dssp HTHHHHHHT
T ss_pred HHHHHHHHH
Confidence 888877764
No 58
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=92.95 E-value=2 Score=42.04 Aligned_cols=221 Identities=15% Similarity=0.100 Sum_probs=129.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh----------hHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCCCCC
Q 003289 7 VKEALNALYHHPDDAVRMQADRWLQDFQHTI----------DAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELP 76 (833)
Q Consensus 7 v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~----------~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~l~ 76 (833)
|...+..+ .+++++.|.+|-..|..+-... ++......+|.+ .+.+++..|+..|.+....+
T Consensus 4 i~~L~~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~----- 75 (252)
T 4hxt_A 4 VEKLVKLL-TSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS--TDSEVQKEAARALANIASGP----- 75 (252)
T ss_dssp HHHHHHHT-TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSC-----
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCC-----
Confidence 44445555 4567888999999998875543 355666777764 45889999999999876531
Q ss_pred hhhHH-HHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhccccccCC---ccchHHHHHhcCCCC-CcHHHHHHHHhh
Q 003289 77 SEAVR-GLQDSLNTLLKKFH-KGPPKVRTQISIAVAALAVHISAEDWGG---GGIVNWLRDEMNSHP-EFVPGFLELLTV 150 (833)
Q Consensus 77 ~~~~~-~lr~~Ll~~l~~~~-~~~~~v~~kL~~~la~l~~~~~~~~Wp~---~~~~~~l~~~~~~~~-~~~~~~L~iL~~ 150 (833)
++.+. .++...+..+...- .++..++...+.+|+.+...... .... .+.++.+++.+.+.. ......+..|..
T Consensus 76 ~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 76 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE-AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALAN 154 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33333 23333555555532 34577888888888888743221 1100 025677777776532 344566777776
Q ss_pred chhhcccccccCChhHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHhhccCCCCccccccchhHHHHHh
Q 003289 151 LPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHI--NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALS 228 (833)
Q Consensus 151 l~Ee~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~--~~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~~~ 228 (833)
|...- +..+..+.+ ..+++.+...+.+ +.++..++.++.+-..... -....+.....++.+..
T Consensus 155 l~~~~--------~~~~~~~~~------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~i~~L~~ 219 (252)
T 4hxt_A 155 IASGP--------DEAIKAIVD------AGGVEVLVKLLTSTDSEVQKEAARALANIASGPT-SAIKAIVDAGGVEVLQK 219 (252)
T ss_dssp HTTSC--------HHHHHHHHH------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBH-HHHHHHHHTTHHHHHHH
T ss_pred HHcCC--------HHHHHHHHH------CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHH
Confidence 64421 122111111 1233444444433 3677888888776554210 00011234567778888
Q ss_pred ccCC--cchHHHHHHHHHHHHhhhc
Q 003289 229 SLHS--EILSEASVNVISELIHYSA 251 (833)
Q Consensus 229 ~L~~--~~~~~~a~~~l~~ii~~~~ 251 (833)
.+.+ ++++..|+.+|..+.....
T Consensus 220 ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 220 LLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred HHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 7764 4678899999999886554
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.79 E-value=0.68 Score=55.01 Aligned_cols=172 Identities=16% Similarity=0.267 Sum_probs=113.9
Q ss_pred hhHHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhccC-C-CChH
Q 003289 429 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-L-PQQP 506 (833)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~~-l-~~~~ 506 (833)
+......++..+.+..+ ..+...+.+.+.. ...|+...+||-++..+++..+..-...++.++..+.. . ..++
T Consensus 115 a~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~----~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~ 189 (986)
T 2iw3_A 115 ASETLISIVNAVNPVAI-KALLPHLTNAIVE----TNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKK 189 (986)
T ss_dssp HHHHHHHHHHHSCGGGH-HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHhCCHHHH-HHHHHHHHHHhcc----ccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcH
Confidence 55566666677776543 4455555554432 45799999999999999998753334567888887753 2 2368
Q ss_pred HHHHHHHHHHHhchHHHhh---------------CCCC------------------hhhHHHHHHHHHhccCCCH-HHHH
Q 003289 507 QLLQTVCLTIGAYSKWFDA---------------ASSD------------------PSILASVLSILTSGMSTSE-DTAA 552 (833)
Q Consensus 507 ~v~~t~~~~ig~y~~~l~~---------------~p~~------------------~~~l~~~l~~l~~~l~~~~-~v~~ 552 (833)
.|...+..++..++.-+.+ +|+. ..-|.-+.++|.++|..+. .+.+
T Consensus 190 ~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r 269 (986)
T 2iw3_A 190 EVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKR 269 (986)
T ss_dssp HHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhhe
Confidence 8888888888887765542 2320 0012233455666776543 4778
Q ss_pred HHHHHHHHHHHHh--hhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHh
Q 003289 553 AAALAFRHICDDC--RKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVIT 609 (833)
Q Consensus 553 ~A~~al~~l~~~~--~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~ 609 (833)
.++.-+.++|+-. +....||++.++..++++..+ --.++.|+..-+|+..+..
T Consensus 270 ~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~----~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 270 KSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFAT----IADPEAREVTLRALKTLRR 324 (986)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTT----CCSHHHHHHHHHHHHHHHH
T ss_pred eeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhc----cCCHHHHHHHHHHHHHHHH
Confidence 8888899998754 345668999899888887764 2357788877777776643
No 60
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=92.67 E-value=17 Score=41.46 Aligned_cols=135 Identities=15% Similarity=0.115 Sum_probs=83.1
Q ss_pred CcchhhHHHHHHHHhhcccCcc----ccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHH
Q 003289 466 EWRPAEAALFCIRAISTYVSVV----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILT 541 (833)
Q Consensus 466 ~w~~~Eaal~~l~~i~e~~~~~----~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~ 541 (833)
....++.++.++..++..-... +...++.+++.+.. .++.++..++++++.++..-... . ....+++.++
T Consensus 196 ~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~--~~~~~~~~a~~~L~nL~~~~~~~-~---~~~~~i~~Lv 269 (644)
T 2z6h_A 196 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD--PSQRLVQNCLWTLRNLSDAATKQ-E---GMEGLLGTLV 269 (644)
T ss_dssp CHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTC--SCHHHHHHHHHHHHHHGGGCTTC-C---SCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHhhcchhh-h---hhhhHHHHHH
Confidence 3455678888888887532111 12335555555432 26889999999999987643222 2 3456677777
Q ss_pred hccCCCH-HHHHHHHHHHHHHHHH---hhhhhh--cCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCCh
Q 003289 542 SGMSTSE-DTAAAAALAFRHICDD---CRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ 613 (833)
Q Consensus 542 ~~l~~~~-~v~~~A~~al~~l~~~---~~~~l~--~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~ 613 (833)
..+.+++ .++..|+.+|.+++.. .+..+. .-++.++..+..- + -..+.+.....+++.+...-+.
T Consensus 270 ~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~---~----~~~~v~~~a~~aL~nL~~~~~~ 340 (644)
T 2z6h_A 270 QLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA---G----DREDITEPAICALRHLTSRHQE 340 (644)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHH---T----TCHHHHHHHHHHHHHHTSSSTT
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHcc---C----CcHHHHHHHHHHHHHHhcCCch
Confidence 6666543 5999999999999863 233333 2344444444321 0 1146788888999988765444
No 61
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=92.67 E-value=0.34 Score=46.45 Aligned_cols=139 Identities=15% Similarity=0.145 Sum_probs=84.9
Q ss_pred CCCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhH-HHHH
Q 003289 464 HNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVL 537 (833)
Q Consensus 464 ~~~w~~~Eaal~~l~~i~e~~~~~-----~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l-~~~l 537 (833)
+.++...+.++++++.++..-... +...++.+++.+.. .++.++..++++++..+..-..+.. ..+ ..++
T Consensus 23 s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~i~~~g~i 98 (210)
T 4db6_A 23 SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQ--AVIDAGAL 98 (210)
T ss_dssp CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTCH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCcHHHH--HHHHCCCH
Confidence 456788899999999998543322 12456667776653 2689999999999987631111000 000 1133
Q ss_pred HHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcC-HHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcC
Q 003289 538 SILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGY-LDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 611 (833)
Q Consensus 538 ~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~-l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~ 611 (833)
+.++..+.+++ .++..|+.++.+++.......... -...+..+.+++.. -+.+.+.....+++.+...-
T Consensus 99 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 99 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-----PNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-----SCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC-----CCHHHHHHHHHHHHHHHcCC
Confidence 44444455543 499999999999996433322111 11244555555553 24678899999999888753
No 62
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=91.69 E-value=4.1 Score=41.43 Aligned_cols=147 Identities=10% Similarity=0.140 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhhccCCCCccccc---cchhHHHHH-hcc-CCcchHHH-HHHHHHHHHhhhccCCCCCCCCchhHHHH
Q 003289 194 LKEQVLEAFASWLRLKHRIPGSVLA---SHPLVLTAL-SSL-HSEILSEA-SVNVISELIHYSAAGSSGGATVNMPLIQV 267 (833)
Q Consensus 194 ~~~~~l~~~~~Wi~~~~~i~~~~~~---~~~ll~~~~-~~L-~~~~~~~~-a~~~l~~ii~~~~~~~~~~~~~~~~~i~~ 267 (833)
++..+|+-+..|+.-.. ....+. -.++++.++ +.- +.|+.+++ .+.++..++++-.... .+.-..+++.
T Consensus 45 vKkeiLkLiet~i~~~~--d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i---~~~vp~Il~~ 119 (321)
T 1w9c_A 45 VKRETLKLISGWVSRSN--DPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHI---TAEIPQIFDA 119 (321)
T ss_dssp HHHHHHHHHHHHHTTCS--CHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGG---GGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHh---hhhHHHHHHH
Confidence 55677777777876421 111111 123443332 222 23555543 6778888887654221 0011223333
Q ss_pred HHHHHHhhHHHhhh-ccCCHHHHHHHHHHHHHHhhHHHHHHHcCC-chhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHH
Q 003289 268 IVPQIMSLKAHLTD-SSKDEEDVKAIARLFADMGDSYVELIATGS-DESMLIVHALLEVASHPEYDIASMTFNFWHSLQV 345 (833)
Q Consensus 268 l~~~~~~l~~~l~~-~~~d~~~~~~l~~l~~~~~~~~~~~l~~~~-~~~~~~l~~ll~~~~~~~~~v~~~~l~fw~~l~~ 345 (833)
+|..- .+.+.. -++-+|...++.+++-++..+....+.+-| +++..+++.++....|++++|++.++.-...+.+
T Consensus 120 VFe~T---L~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~ 196 (321)
T 1w9c_A 120 VFECT---LNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQ 196 (321)
T ss_dssp HHHHH---HHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 33221 222221 123357777888888888776555554434 5678889999999999999999999999888877
Q ss_pred HHh
Q 003289 346 ILT 348 (833)
Q Consensus 346 ~~~ 348 (833)
.+.
T Consensus 197 n~~ 199 (321)
T 1w9c_A 197 NVA 199 (321)
T ss_dssp HHH
T ss_pred HHh
Confidence 664
No 63
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=91.61 E-value=1.1 Score=45.64 Aligned_cols=137 Identities=16% Similarity=0.174 Sum_probs=82.4
Q ss_pred CCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhH-HHHHH
Q 003289 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVLS 538 (833)
Q Consensus 465 ~~w~~~Eaal~~l~~i~e~~~~~-----~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l-~~~l~ 538 (833)
.+-.-++.|+++++.++..-+.. +...++.+++.+..- .++.++..++++|+..+.-....++ .+. ...++
T Consensus 94 ~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~-~~~~v~~~A~~ALsnl~~~~~~~~~--~~~~~ggi~ 170 (296)
T 1xqr_A 94 GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD-ACDTVRVKALFAISCLVREQEAGLL--QFLRLDGFS 170 (296)
T ss_dssp SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHTTCHHHHH--HHHHTTHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccC-CCHHHHHHHHHHHHHHHcCCcHHHH--HHHHCCCHH
Confidence 44566889999999988653321 124567777766532 2578999999999987631111000 011 12233
Q ss_pred HHHhccCCC-HHHHHHHHHHHHHHHHHhhh---hhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcC
Q 003289 539 ILTSGMSTS-EDTAAAAALAFRHICDDCRK---KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 611 (833)
Q Consensus 539 ~l~~~l~~~-~~v~~~A~~al~~l~~~~~~---~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~ 611 (833)
.|...+.++ .+++..|+.++.+++....+ .+.. ...+..+..++..+ +.+.+..+..+++.++...
T Consensus 171 ~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~--~g~i~~Lv~LL~~~-----d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 171 VLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCS--MGMVQQLVALVRTE-----HSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHH--TTHHHHHHHHHTSC-----CSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHH--cCCHHHHHHHHcCC-----ChhHHHHHHHHHHHHHhCC
Confidence 333333332 24999999999999976332 2321 11334444455532 3568899999999998874
No 64
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=90.92 E-value=5.5 Score=37.79 Aligned_cols=109 Identities=12% Similarity=0.165 Sum_probs=74.1
Q ss_pred CCCcchhhHHHHHHHHhhcccCccccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhc
Q 003289 464 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 543 (833)
Q Consensus 464 ~~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~ 543 (833)
+.+|..+..++.+++.+++ .+.++.+++.+.. .++.+|..++..+|.+. +++ .++.++. .
T Consensus 30 ~~~~~vR~~A~~~L~~~~~------~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~-----~~~---~~~~L~~----~ 89 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGD------ERAVEPLIKALKD--EDAWVRRAAADALGQIG-----DER---AVEPLIK----A 89 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTC--SCHHHHHHHHHHHHHHC-----CGG---GHHHHHH----H
T ss_pred CCCHHHHHHHHHHHHHhCC------ccHHHHHHHHHcC--CCHHHHHHHHHHHHhhC-----CHH---HHHHHHH----H
Confidence 4678888999999888765 2456777776653 37899999999999875 232 4554444 3
Q ss_pred cCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHH
Q 003289 544 MSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (833)
Q Consensus 544 l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~v 607 (833)
+.+++ .|+..|+.++.++... ..+..+..++.. -+...|...++++|.+
T Consensus 90 l~~~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d-----~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 90 LKDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKD-----EDWFVRIAAAFALGEI 139 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTC-----SSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHhC-----CCHHHHHHHHHHHHHc
Confidence 55543 4999999999887431 123344444443 2467888888888876
No 65
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=90.65 E-value=1.6 Score=41.48 Aligned_cols=136 Identities=16% Similarity=0.143 Sum_probs=81.1
Q ss_pred CCCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhh-HHHHH
Q 003289 464 HNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSI-LASVL 537 (833)
Q Consensus 464 ~~~w~~~Eaal~~l~~i~e~~~~~-----~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~-l~~~l 537 (833)
..+..-++.++++++.++..-... +...++.++..+.. .++.++..++++++.++..-..+.. .. -..++
T Consensus 65 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~i 140 (210)
T 4db6_A 65 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQ--AVIDAGAL 140 (210)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcC--CcHHHHHHHHHHHHHHHcCCHHHHH--HHHHcCcH
Confidence 346777899999999988543221 13456777777653 2689999999999998741111000 00 01233
Q ss_pred HHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhhc-CHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHH
Q 003289 538 SILTSGMSTS-EDTAAAAALAFRHICDDCRKKLCG-YLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVI 608 (833)
Q Consensus 538 ~~l~~~l~~~-~~v~~~A~~al~~l~~~~~~~l~~-~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi 608 (833)
+.++..+.++ ..++..|+.++.++|......-.. .-...+..+.+++.. -+.+.+.....+++.+.
T Consensus 141 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-----~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 141 PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH-----ENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGC-----SCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhC-----CCHHHHHHHHHHHHHHh
Confidence 4444445443 249999999999999643221111 111245555566653 24667787887777654
No 66
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=89.79 E-value=4.2 Score=38.28 Aligned_cols=109 Identities=14% Similarity=0.153 Sum_probs=72.8
Q ss_pred CCCcchhhHHHHHHHHhhcccCccccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhc
Q 003289 464 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 543 (833)
Q Consensus 464 ~~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~ 543 (833)
..+|..+..++.+++.++. .+.++.++..+.. .++.+|..+++.+|++. +++ .++.++. .
T Consensus 56 ~~~~~vr~~a~~~L~~~~~------~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~-----~~~---~~~~L~~----~ 115 (201)
T 3ltj_A 56 DEDAWVRRAAADALGQIGD------ERAVEPLIKALKD--EDGWVRQSAAVALGQIG-----DER---AVEPLIK----A 115 (201)
T ss_dssp CSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTC--SSHHHHHHHHHHHHHHC-----CGG---GHHHHHH----H
T ss_pred CCCHHHHHHHHHHHHhhCC------HHHHHHHHHHHcC--CCHHHHHHHHHHHHHhC-----cHH---HHHHHHH----H
Confidence 4567778888888887753 2456777776643 37899999999999864 232 4444444 4
Q ss_pred cCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHH
Q 003289 544 MSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (833)
Q Consensus 544 l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~v 607 (833)
+.+++ .|+..|+.++.++.. . ..+..+..++.. -+...|..++++++.+
T Consensus 116 l~d~~~~vr~~a~~aL~~~~~---~-------~~~~~L~~~l~d-----~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 116 LKDEDWFVRIAAAFALGEIGD---E-------RAVEPLIKALKD-----EDGWVRQSAADALGEI 165 (201)
T ss_dssp TTCSSHHHHHHHHHHHHHHTC---G-------GGHHHHHHHTTC-----SSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhCC---H-------HHHHHHHHHHcC-----CCHHHHHHHHHHHHHh
Confidence 55543 499999999988742 1 123344445543 2467888888888876
No 67
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=89.73 E-value=0.79 Score=45.26 Aligned_cols=135 Identities=16% Similarity=0.177 Sum_probs=83.0
Q ss_pred CCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhH-HHHHH
Q 003289 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVLS 538 (833)
Q Consensus 465 ~~w~~~Eaal~~l~~i~e~~~~~-----~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l-~~~l~ 538 (833)
.+..-.+.++.+++.++..-... +...++.+++.+.+ .++.++..++++++.++..-..... ... ..+++
T Consensus 66 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~i~ 141 (252)
T 4db8_A 66 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQ--AVIDAGALP 141 (252)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCCchHHH--HHHHCCCHH
Confidence 34667888999999888653322 12456677776654 3689999999999988642111100 011 12445
Q ss_pred HHHhccCCCH-HHHHHHHHHHHHHHHHhh---hhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhc
Q 003289 539 ILTSGMSTSE-DTAAAAALAFRHICDDCR---KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (833)
Q Consensus 539 ~l~~~l~~~~-~v~~~A~~al~~l~~~~~---~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (833)
.++..+.+++ .++..|+.++.+++.... ..+.. ...+..+..++.. -+.+.+.....+++.+...
T Consensus 142 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~ 210 (252)
T 4db8_A 142 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQLLSS-----PNEQILQEALWALSNIASG 210 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTCHHHHHHGGGC-----SSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHH--CCCHHHHHHHHCC-----CCHHHHHHHHHHHHHHhcC
Confidence 5555565543 499999999999996432 22220 1233444444543 2467788889999988754
No 68
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=88.88 E-value=13 Score=34.78 Aligned_cols=109 Identities=12% Similarity=0.162 Sum_probs=73.9
Q ss_pred CCCcchhhHHHHHHHHhhcccCccccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhc
Q 003289 464 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 543 (833)
Q Consensus 464 ~~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~ 543 (833)
+.+|..+..++.+++.+++ .+.++.+++.+. ..++.+|..++..+|.+. +++ .++.++. .
T Consensus 25 ~~~~~vr~~A~~~L~~~~~------~~~~~~L~~~l~--~~~~~vr~~a~~~L~~~~-----~~~---~~~~L~~----~ 84 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGD------ERAVEPLIKALK--DEDAWVRRAAADALGQIG-----DER---AVEPLIK----A 84 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCC------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHC-----CGG---GHHHHHH----H
T ss_pred CCCHHHHHHHHHHHHhcCC------hhHHHHHHHHHc--CCCHHHHHHHHHHHHhhC-----CHH---HHHHHHH----H
Confidence 5678889999999988765 245777777764 237899999999999874 232 4444444 4
Q ss_pred cCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHH
Q 003289 544 MSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (833)
Q Consensus 544 l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~v 607 (833)
+.+++ .|+..|+.++.++... ..+..+..++.. -+...|..+.+++|.+
T Consensus 85 l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d-----~~~~vr~~a~~aL~~~ 134 (201)
T 3ltj_A 85 LKDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKD-----EDWFVRIAAAFALGEI 134 (201)
T ss_dssp TTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTC-----SSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHcC-----CCHHHHHHHHHHHHHh
Confidence 55543 4999999999887421 123334444442 2467888888888876
No 69
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=85.51 E-value=54 Score=37.15 Aligned_cols=254 Identities=12% Similarity=0.068 Sum_probs=133.0
Q ss_pred HhcCCCHHHHHHHHHHHHHHhcCh----------hHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHH
Q 003289 14 LYHHPDDAVRMQADRWLQDFQHTI----------DAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL 83 (833)
Q Consensus 14 ly~~~d~~~r~~A~~~L~~~q~s~----------~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~~l 83 (833)
+....|+..|..|-..|..+-..+ ++......+|.+ +.++++|..|+..|++.... .+.+..+
T Consensus 22 lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~-~~~~~~~~~A~~~L~~Ls~~------~~~~~~i 94 (644)
T 2z6h_A 22 LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHH------REGLLAI 94 (644)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHTTS------HHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcC------hhhHHHH
Confidence 335678999999999988776543 445555666664 45788999999999964331 2233322
Q ss_pred H-HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhcccc--ccCCccchHHHHHhcCCCCC-cHHHHHHHHhhchhhcccc
Q 003289 84 Q-DSLNTLLKKFH-KGPPKVRTQISIAVAALAVHISAE--DWGGGGIVNWLRDEMNSHPE-FVPGFLELLTVLPEEVFNY 158 (833)
Q Consensus 84 r-~~Ll~~l~~~~-~~~~~v~~kL~~~la~l~~~~~~~--~Wp~~~~~~~l~~~~~~~~~-~~~~~L~iL~~l~Ee~~~~ 158 (833)
. ...+..+.... .+...++...+.+|..++...... ..-+.+.++.+++.+.+... .....+..|..|+..
T Consensus 95 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~---- 170 (644)
T 2z6h_A 95 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG---- 170 (644)
T ss_dssp HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT----
T ss_pred HHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc----
Confidence 2 22444444432 345678888888888887653210 00001267777777765322 223345556555431
Q ss_pred cccCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhccCCCCccccccchhHHHHHhccCC--cchH
Q 003289 159 KIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHS--EILS 236 (833)
Q Consensus 159 ~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~~~~L~~--~~~~ 236 (833)
.++.|..+.+. ...+.++.++...- .+.+...++.++..-... .-....+.....++.+...+.+ ++++
T Consensus 171 ----~~~~~~~i~~~--g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~~--~~~~~~l~~~g~l~~L~~ll~~~~~~~~ 241 (644)
T 2z6h_A 171 ----NQESKLIILAS--GGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVC--SSNKPAIVEAGGMQALGLHLTDPSQRLV 241 (644)
T ss_dssp ----CHHHHHHHHHT--THHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTC--TTHHHHHHHTTHHHHHHTTTTCSCHHHH
T ss_pred ----CcHHHHHHHHc--CChHHHHHHHHcCC-hHHHHHHHHHHHHHHhcC--cccHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence 11122222111 22344444444321 123444555554433221 0001123344567778887765 4667
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhh
Q 003289 237 EASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGD 301 (833)
Q Consensus 237 ~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~~ 301 (833)
..++.+|..+....... ..+..+++.++.+ +. ..|.+..+..+..+..++.
T Consensus 242 ~~a~~~L~nL~~~~~~~---------~~~~~~i~~Lv~l---L~--~~d~~v~~~a~~aL~~L~~ 292 (644)
T 2z6h_A 242 QNCLWTLRNLSDAATKQ---------EGMEGLLGTLVQL---LG--SDDINVVTCAAGILSNLTC 292 (644)
T ss_dssp HHHHHHHHHHGGGCTTC---------CSCHHHHHHHHHH---TT--CSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcchhh---------hhhhhHHHHHHHH---Hc--CCCHHHHHHHHHHHHHHHc
Confidence 88888888886443211 1112333433322 21 3455666666677766654
No 70
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=81.28 E-value=67 Score=35.01 Aligned_cols=135 Identities=15% Similarity=0.115 Sum_probs=82.8
Q ss_pred CcchhhHHHHHHHHhhcccCcc----ccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHH
Q 003289 466 EWRPAEAALFCIRAISTYVSVV----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILT 541 (833)
Q Consensus 466 ~w~~~Eaal~~l~~i~e~~~~~----~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~ 541 (833)
+....++++.++..++..-... +...++.+++.+.. .++.++..++++++.++...... . ....+++.+.
T Consensus 199 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~-~---~~~~~i~~L~ 272 (529)
T 1jdh_A 199 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD--PSQRLVQNCLWTLRNLSDAATKQ-E---GMEGLLGTLV 272 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTS--SCHHHHHHHHHHHHHHHTTCTTC-S---CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhC--CChHHHHHHHHHHHHHhcCChhh-H---HHHhHHHHHH
Confidence 4456778888888887532110 12344555554432 26889999999999887654322 1 3456666666
Q ss_pred hccCCCH-HHHHHHHHHHHHHHHH---hhhhhh--cCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCCh
Q 003289 542 SGMSTSE-DTAAAAALAFRHICDD---CRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ 613 (833)
Q Consensus 542 ~~l~~~~-~v~~~A~~al~~l~~~---~~~~l~--~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~ 613 (833)
..+++++ .++..|+.++.+++.. .+..+. +-++.+++.+..- .-+.+.+...+.+++.+....|.
T Consensus 273 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~-------~~~~~v~~~a~~~L~nl~~~~~~ 343 (529)
T 1jdh_A 273 QLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA-------GDREDITEPAICALRHLTSRHQE 343 (529)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHTSSSTT
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHcc-------CCHHHHHHHHHHHHHHHHcCCch
Confidence 6665442 5999999999999863 333333 2344455444321 11256788889999988766544
No 71
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=80.44 E-value=27 Score=34.49 Aligned_cols=117 Identities=9% Similarity=0.076 Sum_probs=75.4
Q ss_pred CCCcchhhHHHHHHHHhhcccCccccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhc
Q 003289 464 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 543 (833)
Q Consensus 464 ~~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~ 543 (833)
..++.-+.+++.+++.++...+......++.++..+.. .++.||..++..+|.+.. +. .++.++..
T Consensus 102 d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d--~~~~vR~~a~~aL~~~~~-----~~---~~~~L~~~---- 167 (280)
T 1oyz_A 102 DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFD--KSTNVRRATAFAISVIND-----KA---TIPLLINL---- 167 (280)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTC--SCHHHHHHHHHHHHTC--------C---CHHHHHHH----
T ss_pred CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhC--CCHHHHHHHHHHHHhcCC-----HH---HHHHHHHH----
Confidence 45778889999999998865432223345555554432 379999999999998763 33 45555554
Q ss_pred cCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHH
Q 003289 544 MSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (833)
Q Consensus 544 l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~v 607 (833)
+.+++ .|+..|+.++.++.. .-+..+..+...+.. -+...|.....++|.+
T Consensus 168 l~d~~~~vr~~a~~aL~~~~~--------~~~~~~~~L~~~l~d-----~~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 168 LKDPNGDVRNWAAFAININKY--------DNSDIRDCFVEMLQD-----KNEEVRIEAIIGLSYR 219 (280)
T ss_dssp HTCSSHHHHHHHHHHHHHHTC--------CCHHHHHHHHHHTTC-----SCHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHhhcc--------CcHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHh
Confidence 44443 499999999987631 123345555555543 2367788888888765
No 72
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=79.84 E-value=70 Score=34.39 Aligned_cols=110 Identities=8% Similarity=0.091 Sum_probs=65.9
Q ss_pred CCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCCh------hhH
Q 003289 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDP------SIL 533 (833)
Q Consensus 465 ~~w~~~Eaal~~l~~i~e~~~~~-----~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~------~~l 533 (833)
.++...+.|+.+++.++..-+.. ....++.+++.|.+ .++.++..+++.+...+.. +++.. .-+
T Consensus 14 ~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s--~~~~~~~~A~~aL~nLa~~---~~~~k~~i~~~G~i 88 (457)
T 1xm9_A 14 QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS--PNQNVQQAAAGALRNLVFR---STTNKLETRRQNGI 88 (457)
T ss_dssp SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS--SCHHHHHHHHHHHHHHHSS---CHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhcC---CHHHHHHHHHcCCH
Confidence 35566788888888887533221 13457777777663 3688899999998887642 12110 135
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHH--hhhhhhcCHHHHHHHHHHHh
Q 003289 534 ASVLSILTSGMSTSEDTAAAAALAFRHICDD--CRKKLCGYLDGLYNVYRTAV 584 (833)
Q Consensus 534 ~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~--~~~~l~~~l~~ll~~l~~~l 584 (833)
|.++.++-.. .++ .++..|+.++.+++.. ++..+.. ..+..+..++
T Consensus 89 ~~Lv~lL~~~-~~~-~~~~~a~~aL~nLa~~~~~~~~i~~---g~i~~Lv~ll 136 (457)
T 1xm9_A 89 REAVSLLRRT-GNA-EIQKQLTGLLWNLSSTDELKEELIA---DALPVLADRV 136 (457)
T ss_dssp HHHHHHHTTC-CCH-HHHHHHHHHHHHHHTSSSTHHHHHH---HHHHHHHHHT
T ss_pred HHHHHHHhhC-CCH-HHHHHHHHHHHHHhcCHHhHHHHHh---ccHHHHHHHH
Confidence 5555554210 123 4999999999999953 3333332 4444444544
No 73
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=79.65 E-value=99 Score=35.97 Aligned_cols=129 Identities=12% Similarity=0.086 Sum_probs=76.8
Q ss_pred HHHHHHhhcccCcc------ccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCC
Q 003289 474 LFCIRAISTYVSVV------EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS 547 (833)
Q Consensus 474 l~~l~~i~e~~~~~------~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~ 547 (833)
.++++++..+.... ....++.++..+.+ .++.++..+++.++..+.--..... ....-++.|...+...
T Consensus 268 ~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s--~~~~~q~~A~~al~~aa~~~~~R~~---I~~~gv~~L~~Ll~s~ 342 (810)
T 3now_A 268 TVAITALLNGPLDVGNQVVAREGILQMILAMATT--DDELQQRVACECLIAASSKKDKAKA---LCEQGVDILKRLYHSK 342 (810)
T ss_dssp HHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHS--SCHHHHHHHHHHHHHHTTSHHHHHT---THHHHHHHHHHHTTCS
T ss_pred HHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCcHHHHH---HHHcCcHHHHHHHcCC
Confidence 44555554443322 23556777766653 3788999999999986542111110 2222224444444433
Q ss_pred -HHHHHHHHHHHHHHHHHhh-----hhhh-cCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhc
Q 003289 548 -EDTAAAAALAFRHICDDCR-----KKLC-GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (833)
Q Consensus 548 -~~v~~~A~~al~~l~~~~~-----~~l~-~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (833)
..++..|+.+|.++..... +.+. .-+..++..+..++..+ ..+.+.+...+++++++...
T Consensus 343 ~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~---~~d~~v~~~AveaLayLS~~ 409 (810)
T 3now_A 343 NDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKP---GKDKDIRRWAADGLAYLTLD 409 (810)
T ss_dssp CHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCS---SCCSSHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHhCC
Confidence 2488899998888864221 1222 23677888888888753 13467899999999998665
No 74
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=78.30 E-value=44 Score=31.16 Aligned_cols=159 Identities=11% Similarity=0.116 Sum_probs=86.8
Q ss_pred HHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcc-----CCCChHHHHHHHHHHHHhchH
Q 003289 447 KILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-----KLPQQPQLLQTVCLTIGAYSK 521 (833)
Q Consensus 447 ~~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~-----~l~~~~~v~~t~~~~ig~y~~ 521 (833)
+..++.+.+.+. + ..+++|+..+.. . +.-++.+|-++.++. ++. +..+....+.++.+.
T Consensus 10 q~yf~~It~a~~-----~---~~r~~aL~sL~~---D--~gL~~LlPyf~~fI~~~v~~nl~-~l~~L~~lm~~~~AL-- 73 (196)
T 4atg_A 10 QLYFDKILSMIK-----S---DMKDIAIECLEK---E--SGLQQLVPYFIQHISELILKSFK-EAEVLKTCIALYFSL-- 73 (196)
T ss_dssp HHHHHHHHHHHT-----S---TTHHHHHHHHHH---C--SSCTTTHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHH-----h---HHHHHHHHHHhc---C--CChhhhHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHH--
Confidence 445666666553 2 335676666542 1 112456777776653 232 444444455555543
Q ss_pred HHhhCCCC------hhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHh
Q 003289 522 WFDAASSD------PSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAE 595 (833)
Q Consensus 522 ~l~~~p~~------~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~ 595 (833)
-.||.. ++++|.++..++..=-.+..+|..||..+..+|+.+...-..--+-+...+.+.+..+ .-+.
T Consensus 74 --l~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp---~~~l- 147 (196)
T 4atg_A 74 --IKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDP---NRSE- 147 (196)
T ss_dssp --HHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCT---TSCH-
T ss_pred --HcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCC---CCCh-
Confidence 445542 2455666665542211222499999999999999988755444566778887776543 2233
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHH
Q 003289 596 DSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEI 634 (833)
Q Consensus 596 ~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~ 634 (833)
...|.|+.- +.+++. +.+..++-|-+..+.+.
T Consensus 148 --~t~YGAi~G-L~~lG~----~~vr~~llP~l~~~~~~ 179 (196)
T 4atg_A 148 --DSQYGALYC-LSILSK----NVVNTVIREHAEEYKRT 179 (196)
T ss_dssp --HHHHHHHHH-HHHHCH----HHHHTHHHHHHHHHHHH
T ss_pred --HHHHHHHHH-HHHhHH----HHHHHhhhcCHHHHHHH
Confidence 334444432 233333 34455566665555443
No 75
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=76.01 E-value=51 Score=30.72 Aligned_cols=171 Identities=15% Similarity=0.025 Sum_probs=94.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHH
Q 003289 7 VKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDS 86 (833)
Q Consensus 7 v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~~lr~~ 86 (833)
+...+..+ .++|+..|..|-..|.++.. +++......+|.+ .++.+|..++..|...- +++.. ..
T Consensus 21 ~~~L~~~L-~~~~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~-------~~~~~----~~ 85 (211)
T 3ltm_A 21 VEMYIKNL-QDDSYYVRRAAAYALGKIGD-ERAVEPLIKALKD--EDAWVRRAAADALGQIG-------DERAV----EP 85 (211)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTTC--SCHHHHHHHHHHHHHHC-------CGGGH----HH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHcC--CCHHHHHHHHHHHHhhC-------CHHHH----HH
Confidence 44555555 57799999999999998874 6778888888875 47889999999887642 12222 22
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-CCcHHHHHHHHhhchhhc-ccc---cc-
Q 003289 87 LNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-PEFVPGFLELLTVLPEEV-FNY---KI- 160 (833)
Q Consensus 87 Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~~-~~~~~~~L~iL~~l~Ee~-~~~---~~- 160 (833)
|+..+. .....||...+.+|+.+. -++ .++.+++.+... +.........|..+.++- ... .+
T Consensus 86 L~~~l~---~~~~~vr~~a~~aL~~~~-------~~~--~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~ 153 (211)
T 3ltm_A 86 LIKALK---DEDGWVRQSAAVALGQIG-------DER--AVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALK 153 (211)
T ss_dssp HHHHTT---CSSHHHHHHHHHHHHHHC-------CGG--GHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT
T ss_pred HHHHHc---CCCHHHHHHHHHHHHHhC-------cHH--HHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHc
Confidence 333332 245678887777776552 122 456666666432 223334445554443220 000 00
Q ss_pred cCChhHHHHHHHHHHHH-HHHHHHHHHhhhhh--hHHHHHHHHHHHH
Q 003289 161 AARPERRRQFEKELTSQ-MEVALSTLTACLHI--NELKEQVLEAFAS 204 (833)
Q Consensus 161 ~~~~~~r~~l~~~l~~~-~~~vl~~l~~~l~~--~~~~~~~l~~~~~ 204 (833)
.-...-|......|... .+.+.+.+...+.+ +.++..+..++..
T Consensus 154 d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 154 DEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 00122233333333221 13455556665554 3567777776653
No 76
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=75.07 E-value=34 Score=33.96 Aligned_cols=186 Identities=9% Similarity=0.008 Sum_probs=91.6
Q ss_pred HhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHH
Q 003289 594 AEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADA 673 (833)
Q Consensus 594 ~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 673 (833)
=.+|...++.+..++...+.+....-....+.-+...+...+... +..-....++++..++............
T Consensus 23 WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-------N~~v~~~al~~l~~~~~~~~~~~~~~~~ 95 (278)
T 4ffb_C 23 WKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-------NVVAQEQAIVALNSLIDAFASSSLKNAH 95 (278)
T ss_dssp HHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-------SHHHHHHHHHHHHHHHTTCC---CCHHH
T ss_pred HHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHhhhhhcccch
Confidence 357899999998888876544333211122333333445554322 2333344677787777655322211111
Q ss_pred HH-HHHHHHHHHHHh-h-cCChHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh-cC--CccHhhhHHHHHHHh
Q 003289 674 IQ-RLWPIFKAIFDI-R-AWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQ-HQ--QPCFLYLSSEVIKIF 747 (833)
Q Consensus 674 ~~-~~~~~l~~il~~-~-~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~-~~--~~~~L~~~~~li~~f 747 (833)
.. .+-.++..++++ . .....+++.+..++-.++...++ ...+++.+...++. +| ....+.++..++..|
T Consensus 96 ~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-----~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 96 NITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-----ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-----SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 11 122334444555 2 23456677666665544332111 12223333333322 11 246788889999999
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhC
Q 003289 748 GSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYC 799 (833)
Q Consensus 748 g~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~~~~~ 799 (833)
|...- . ....+..+...+...|. +.+|+|+.+...++..+.+..
T Consensus 171 g~~~~-~--~k~~l~~i~~~l~k~l~-----d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 171 GLTNV-N--VQTFLPELLKHVPQLAG-----HGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp TTTTC-C--HHHHHHHHGGGHHHHHT-----CSSHHHHHHHHHHHHHHHTC-
T ss_pred CCCcC-C--chhHHHHHHHHHHHHHh-----CCcHHHHHHHHHHHHHHHHHh
Confidence 97521 1 11222223323333343 678999999999998887754
No 77
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=74.13 E-value=1.2e+02 Score=35.35 Aligned_cols=299 Identities=10% Similarity=0.056 Sum_probs=0.0
Q ss_pred CcchhhHHHHHHHHhhcccCccccccHHHHHhhc-cCCCChHHHHHHHHHHHHhchHHHhhCCC-----ChhhHHHHHHH
Q 003289 466 EWRPAEAALFCIRAISTYVSVVEAEVMPQVMALL-PKLPQQPQLLQTVCLTIGAYSKWFDAASS-----DPSILASVLSI 539 (833)
Q Consensus 466 ~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l-~~l~~~~~v~~t~~~~ig~y~~~l~~~p~-----~~~~l~~~l~~ 539 (833)
+-+.....+.........++.++.+.++++++.+ +.+.. .++...+|-+..|+..+.. .. +++.++.+
T Consensus 103 ~~~~~~~l~~l~~~ar~fF~~~~~~~~~eil~e~~p~l~p-----~s~~~~~~~l~~fLP~~~~~~~~~~~-w~~~~f~l 176 (799)
T 1vsy_4 103 DLQLFRLLLKHAHNAKPFFDKSKESLLVDTMNFLLSSLAP-----STMMAVMPIVTSVVPYHYHIHSKIID-YFPFCYSI 176 (799)
T ss_dssp THHHHHHHHHHHHHTSTTSCTTCGGGHHHHHHHHGGGCST-----TTHHHHHHHHHHHSCCCCCSSCCSGG-GHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcCc-----hhHHHHHHHHHHHcCCCCCchhhhhh-hHHHHHHH
Q ss_pred HHhccCCCHHHHHHHHHHHHHHHHHhh------------hhhh--cC-------HHHHHHHHHHHhcCcCCCCCCHhhHH
Q 003289 540 LTSGMSTSEDTAAAAALAFRHICDDCR------------KKLC--GY-------LDGLYNVYRTAVNGEGSLKVSAEDSL 598 (833)
Q Consensus 540 l~~~l~~~~~v~~~A~~al~~l~~~~~------------~~l~--~~-------l~~ll~~l~~~l~~~~~~~l~~~~~~ 598 (833)
--..=+.+. .-.+-..-|.++++..- ..+. || ++.+++.+...+++ ........
T Consensus 177 W~~~~~s~~-wd~~~~~l~~rla~~~~~~~~~~~~~~~~g~idw~~~gift~~q~~~iFt~~lr~l~~----~~~~~~~~ 251 (799)
T 1vsy_4 177 WSSVSANVA-IDTHMYDFVGSISKDVHNKILSSEHEKDVVGVEFGEFGIFTDDQMTFMFNRLQGHLRT----DGQIHSYS 251 (799)
T ss_dssp BTTBCSCHH-HHHHHHHHHHHHHHHHHHHHSSSCSCTTCCCSCCCSSTTCCHHHHHHHHHHHHHHHHT----TCCCSSHH
T ss_pred HHhcccCch-HHHHHHHHHHHHHHHhhhhhcccccccCCCccchHhhCcccHHHHHHHHHHHHHhccC----cCCccchH
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccC-------------
Q 003289 599 HLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN------------- 665 (833)
Q Consensus 599 ~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~------------- 665 (833)
.+.+-|.+.++.-..+....+++++++-+-.-. .+..-..+-..|+.++..+-
T Consensus 252 ~~a~~IV~sl~~~~~~~~~~~L~~Li~~iesy~--------------HPSN~G~Wt~~L~~Fl~~L~~~f~kR~~~Er~~ 317 (799)
T 1vsy_4 252 RTVKPFVYAINGSKKDRFFEKLVSLAKAIETFI--------------HPSNNGFWTKPNAKFVHAFIKSYHGRVKYEEDI 317 (799)
T ss_dssp HHHHHHHTTCCTTSCTTTHHHHHHHHHHHHHHH--------------STTCCSTTHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHHHhccc--------------CCCCCCccHHHHHHHHHHHHHHHHHHHHHhhcc
Q ss_pred -----------CcccHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH-HHHHh---hhhhhhhHHHHHHHHHH--HH
Q 003289 666 -----------HPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKY-AVRTS---KRFMGITIGAILEEIQG--LY 728 (833)
Q Consensus 666 -----------~~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~-~~~~~---~~~~~~~l~~l~~~l~~--~~ 728 (833)
+++....+.+.+.|++. +..|+++..+......+++. +...+ .-.+.+.+..+-..+.. .-
T Consensus 318 ~~~~~p~~~~Lt~~~~~~fV~~l~p~~~--~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~ 395 (799)
T 1vsy_4 318 CARGVTNGICLTSFCHEEIVEIFLNIIS--LGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFIN 395 (799)
T ss_dssp TTTTCCCSSSCCHHHHHHHHHHHHHHHH--HHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTT
T ss_pred ccCCCchhhcCCHHHHHHHHHHHHHHHH--HHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhcccccc
Q ss_pred hhcCCccHhhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCC
Q 003289 729 QQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCP 800 (833)
Q Consensus 729 ~~~~~~~~L~~~~~li~~fg~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~~~~~p 800 (833)
++++....|.++..++...-.++.++..+..++..++..+ -.+||+-....|+|+..+...-|
T Consensus 396 e~Hrl~~aL~~l~~~~r~lv~~~~yr~hl~~lL~l~LpgI---------D~ND~~KT~~tl~fi~~i~s~ip 458 (799)
T 1vsy_4 396 SRHRIISSLKQFTRVIRFIVMDKLYRVHITNVLSMLVSKL---------DMNDTNLTSNLINGIVSIAAFIP 458 (799)
T ss_dssp CHHHHHHHHHHHHTTHHHHTTSTTGGGHHHHHHHHHHHTC---------CSSCHHHHHHHHHHHHHHHHTSC
T ss_pred chhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHhccC---------CcccHHHHHHHHHHHHHHHHhcc
No 78
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=73.76 E-value=87 Score=32.35 Aligned_cols=221 Identities=10% Similarity=0.020 Sum_probs=115.0
Q ss_pred chhhHHHHHHHHhhcccCcc-----ccccHHHHHhhcc-------CCC--ChHHHHHHHHHHHHhchHHHhhCCCChhh-
Q 003289 468 RPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLP-------KLP--QQPQLLQTVCLTIGAYSKWFDAASSDPSI- 532 (833)
Q Consensus 468 ~~~Eaal~~l~~i~e~~~~~-----~~~~l~~l~~~l~-------~l~--~~~~v~~t~~~~ig~y~~~l~~~p~~~~~- 532 (833)
..+..|+++|+-++.. ++. +...++.++..|. ... .++.++..+.+++...+.--..+.. ..
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~--~i~ 123 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA--TLC 123 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHH--HHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHH--HHH
Confidence 4567889999988865 221 1244666666652 111 2578999999999987631111111 11
Q ss_pred -HHHHHHHHHhccCCC-HHHHHHHHHHHHHHHH----Hhhhhhh--cCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHH
Q 003289 533 -LASVLSILTSGMSTS-EDTAAAAALAFRHICD----DCRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEAL 604 (833)
Q Consensus 533 -l~~~l~~l~~~l~~~-~~v~~~A~~al~~l~~----~~~~~l~--~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai 604 (833)
...+++.|+..+..+ ..++..|+.++++++. +.+..+. .-++.+++.+.. . -+.+.+.....++
T Consensus 124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~---~-----~~~~~~~~A~~aL 195 (354)
T 3nmw_A 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE---V-----KKESTLKSVLSAL 195 (354)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHH---C-----CCHHHHHHHHHHH
T ss_pred HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhc---C-----CCHHHHHHHHHHH
Confidence 234567777666554 2499999999999985 3445554 345666655432 1 1345667777777
Q ss_pred HHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHH-HHHHHHHHH
Q 003289 605 SMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI-QRLWPIFKA 683 (833)
Q Consensus 605 ~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~ 683 (833)
..+...- ++. +..+. .....+..|.+++..................|..++..+... ++....+. ...+|.+..
T Consensus 196 ~nLs~~~-~~n-k~~i~-~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~--~~~~~~i~~~g~i~~Lv~ 270 (354)
T 3nmw_A 196 WNLSAHC-TEN-KADIC-AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN--EDHRQILRENNCLQTLLQ 270 (354)
T ss_dssp HHHHTTC-HHH-HHHHH-HSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHTTTHHHHHHH
T ss_pred HHHHccC-hhh-hHHHH-HhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCC--HHHHHHHHHcCCHHHHHH
Confidence 7776532 222 22111 023344444555543321100001122233444444322111 11111111 134555555
Q ss_pred HHHhhcCChHHHHHHHHHHHHHH
Q 003289 684 IFDIRAWDMRTMESLCRACKYAV 706 (833)
Q Consensus 684 il~~~~~~~~v~e~~~~~~~~~~ 706 (833)
++. ..+.++.+.++.++..+.
T Consensus 271 lL~--~~~~~v~~~A~~aL~nLa 291 (354)
T 3nmw_A 271 HLK--SHSLTIVSNACGTLWNLS 291 (354)
T ss_dssp HTT--CSCHHHHHHHHHHHHHHT
T ss_pred HHc--CCChHHHHHHHHHHHHHh
Confidence 554 345678888888877653
No 79
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=66.15 E-value=87 Score=36.94 Aligned_cols=123 Identities=13% Similarity=0.133 Sum_probs=81.5
Q ss_pred chhhHHHHHHHHhhcccCccccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCC
Q 003289 468 RPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS 547 (833)
Q Consensus 468 ~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~ 547 (833)
.-+.+|+.+++-|+-+= .+.++.++..+.+-. +|.+|+.+...+|..+ ..+|. +.++..|....+++
T Consensus 593 ~VRraAViaLGlI~~g~----~e~v~rlv~~L~~~~-d~~VR~gAalALGli~---aGn~~-----~~aid~L~~L~~D~ 659 (963)
T 4ady_A 593 DVRRAAVIALGFVLLRD----YTTVPRIVQLLSKSH-NAHVRCGTAFALGIAC---AGKGL-----QSAIDVLDPLTKDP 659 (963)
T ss_dssp HHHHHHHHHHHHHTSSS----CSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHT---SSSCC-----HHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHhhccCC----HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhc---cCCCc-----HHHHHHHHHHccCC
Confidence 34567777777654331 246788887766433 6999999999999765 33442 55666555556665
Q ss_pred H-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHH
Q 003289 548 E-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSM 606 (833)
Q Consensus 548 ~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~ 606 (833)
. .|+..|..|+..+-........|.+..++..+.+..... .-+...+..+.-|.|.
T Consensus 660 d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk---~~d~~~~fga~iAqGl 716 (963)
T 4ady_A 660 VDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNK---HQEGLAKFGACVAQGI 716 (963)
T ss_dssp SHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCS---SSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHH
Confidence 4 599999999998877666677788888888887776532 1223445544445553
No 80
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=61.78 E-value=32 Score=31.62 Aligned_cols=119 Identities=14% Similarity=0.101 Sum_probs=71.2
Q ss_pred HHHHHHHHhhcccCccccccHHHHHhhccC-C-CChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCH-
Q 003289 472 AALFCIRAISTYVSVVEAEVMPQVMALLPK-L-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE- 548 (833)
Q Consensus 472 aal~~l~~i~e~~~~~~~~~l~~l~~~l~~-l-~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~- 548 (833)
-.-|++..|+..-+ ..++.++.-+.+ + +.+..=+.+++.+|+..+. .++ ++..+.++-++.-+++.+
T Consensus 126 n~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe---n~~---~yv~PfLprL~aLL~D~de 195 (253)
T 2db0_A 126 NVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE---NSF---KYVNPFLPRIINLLHDGDE 195 (253)
T ss_dssp HHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT---TTH---HHHGGGHHHHHGGGGCSSH
T ss_pred cHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc---cCc---cccCcchHHHHHHHcCcch
Confidence 34456655555433 234444443321 1 2256678888899998763 222 366666667777777654
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhc
Q 003289 549 DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (833)
Q Consensus 549 ~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (833)
.|+..|..++.+++....+ +-+- +...++.+ + .-+...+..+-||++.++-.
T Consensus 196 iVRaSaVEtL~~lA~~npk-lRki---i~~kl~e~-~-----D~S~lv~~~V~egL~rl~l~ 247 (253)
T 2db0_A 196 IVRASAVEALVHLATLNDK-LRKV---VIKRLEEL-N-----DTSSLVNKTVKEGISRLLLL 247 (253)
T ss_dssp HHHHHHHHHHHHHHTSCHH-HHHH---HHHHHHHC-C-----CSCHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHcCHH-HHHH---HHHHHHHh-c-----CcHHHHHHHHHHHHHHHHHH
Confidence 5999999999999865433 3322 22333333 2 23466788899999887644
No 81
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=55.86 E-value=88 Score=34.37 Aligned_cols=85 Identities=15% Similarity=0.144 Sum_probs=53.0
Q ss_pred cchhhHHHHHHHHhhcccCccccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCC
Q 003289 467 WRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST 546 (833)
Q Consensus 467 w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~ 546 (833)
-.-+|+|-.+++++ ..++.+ ...+.+++..+.. + .=.+|...+.-+.=+.+.+. -++.+++.++.|+.+
T Consensus 242 APVRETaAQtLGaL-~hLp~e-~~IL~qLV~~l~~-~-~WEVRHGGLLGLKYL~DLL~-------~Ld~Vv~aVL~GL~D 310 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP-NDIIEQLVGFLDS-G-DWQVQFSGLIALGYLKEFVE-------DKDGLCRKLVSLLSS 310 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS-CCHHHHHTTGGGC-S-CHHHHHHHHHHHHHTGGGCC-------CHHHHHHHHHHHTTC
T ss_pred eehHHHHHHHHHHH-HhCChh-HHHHHHHHhhcCC-C-CeeehhhhHHHHHHHHHHHH-------HHHHHHHHHHhhcCC
Confidence 34579999999998 666654 3344444432211 1 12456555555442211111 278999999999988
Q ss_pred CH-HHHHHHHHHHHHHH
Q 003289 547 SE-DTAAAAALAFRHIC 562 (833)
Q Consensus 547 ~~-~v~~~A~~al~~l~ 562 (833)
++ +|+..||.++.-++
T Consensus 311 ~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 311 PDEDIKLLSAELLCHFP 327 (800)
T ss_dssp SSHHHHHHHHHHHTTSC
T ss_pred cccHHHHHHHHHhhhhc
Confidence 74 69999999877555
No 82
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=54.22 E-value=60 Score=33.59 Aligned_cols=142 Identities=11% Similarity=0.119 Sum_probs=81.4
Q ss_pred CCcchhhHHHHHHHHhhcccCcc------ccccHHHHHhhccCCCCh--HHHHHHHHHHHHhchHHHhhCCCChhhH--H
Q 003289 465 NEWRPAEAALFCIRAISTYVSVV------EAEVMPQVMALLPKLPQQ--PQLLQTVCLTIGAYSKWFDAASSDPSIL--A 534 (833)
Q Consensus 465 ~~w~~~Eaal~~l~~i~e~~~~~------~~~~l~~l~~~l~~l~~~--~~v~~t~~~~ig~y~~~l~~~p~~~~~l--~ 534 (833)
.+....|.++.++..++...++. ....++.+++.+..-... ..++..++.++...+.++..+++..+.+ .
T Consensus 183 ~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~ 262 (354)
T 3nmw_A 183 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 262 (354)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHc
Confidence 34566788888888887644322 234566677766432211 2577778888877775544333311111 1
Q ss_pred HHHHHHHhccCCC-HHHHHHHHHHHHHHHH---HhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhc
Q 003289 535 SVLSILTSGMSTS-EDTAAAAALAFRHICD---DCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (833)
Q Consensus 535 ~~l~~l~~~l~~~-~~v~~~A~~al~~l~~---~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (833)
..++.++.-+.++ ..++..|+.++.+++. +.+..+... ..+..+.+++..+ +...+.....++..+...
T Consensus 263 g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~--G~i~~Lv~LL~s~-----~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 263 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM--GAVSMLKNLIHSK-----HKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHT--THHHHHHTTTTCS-----SHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHC--CCHHHHHHHHhCC-----CHHHHHHHHHHHHHHHcC
Confidence 1334444445544 2599999999999983 233344321 1334444455432 356678888888888877
Q ss_pred CCh
Q 003289 611 LPQ 613 (833)
Q Consensus 611 ~~~ 613 (833)
-|.
T Consensus 336 ~~~ 338 (354)
T 3nmw_A 336 RPA 338 (354)
T ss_dssp CCG
T ss_pred CHH
Confidence 554
No 83
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=53.97 E-value=54 Score=35.98 Aligned_cols=166 Identities=13% Similarity=0.155 Sum_probs=93.9
Q ss_pred CCCcchhhHHHHHHHHhhcccCc-------cccccHHHHHhhcc--CCC---C---hHHHHHHHHHHHHhchHHHhhCCC
Q 003289 464 HNEWRPAEAALFCIRAISTYVSV-------VEAEVMPQVMALLP--KLP---Q---QPQLLQTVCLTIGAYSKWFDAASS 528 (833)
Q Consensus 464 ~~~w~~~Eaal~~l~~i~e~~~~-------~~~~~l~~l~~~l~--~l~---~---~~~v~~t~~~~ig~y~~~l~~~p~ 528 (833)
++.|+.+.+|-.++..+-..-.. .+.+...+++-.+. ++. + -.-||.|+..++|.. .++...
T Consensus 185 dp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e-- 261 (800)
T 3oc3_A 185 SYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP-- 261 (800)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS--
T ss_pred CcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh--
Confidence 57899999999999987655431 12234444444432 332 1 257999999999997 544433
Q ss_pred ChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHH
Q 003289 529 DPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (833)
Q Consensus 529 ~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~v 607 (833)
-.++..++..+..+. .|+-.+-.+++.+ ..+...++.+++.+..-+.. -+.+.|.-..+++.-+
T Consensus 262 -----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~Ld~Vv~aVL~GL~D-----~DDDVRAVAAetLiPI 326 (800)
T 3oc3_A 262 -----NDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVEDKDGLCRKLVSLLSS-----PDEDIKLLSAELLCHF 326 (800)
T ss_dssp -----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCCHHHHHHHHHHHTTC-----SSHHHHHHHHHHHTTS
T ss_pred -----HHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHHHHHHHHHHHhhcCC-----cccHHHHHHHHHhhhh
Confidence 133444444555553 5888888888888 33333377777777666553 2344554444444333
Q ss_pred HhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhc
Q 003289 608 ITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRY 663 (833)
Q Consensus 608 i~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 663 (833)
+ .| .-+..++..+..++.+... ........++.++++++.
T Consensus 327 A--~p---------~~l~~LL~iLWd~L~~LDD-----LSASTgSVMdLLAkL~s~ 366 (800)
T 3oc3_A 327 P--IT---------DSLDLVLEKCWKNIESEEL-----ISVSKTSNLSLLTKIYRE 366 (800)
T ss_dssp C--CS---------STHHHHHHHHHHHHHTCCS-----CCTTHHHHHHHHHHHHHH
T ss_pred c--ch---------hhHHHHHHHHHHHhhhhcc-----cchhhHHHHHHHHHHHcC
Confidence 2 11 1244445555666665421 111223356677776554
No 84
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=50.47 E-value=2.7e+02 Score=29.96 Aligned_cols=255 Identities=12% Similarity=0.071 Sum_probs=133.1
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhcC----------hhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCCCCChhhHH
Q 003289 12 NALYHHPDDAVRMQADRWLQDFQHT----------IDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVR 81 (833)
Q Consensus 12 ~~ly~~~d~~~r~~A~~~L~~~q~s----------~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~ 81 (833)
..+..+.|+..|..|-..|..+-.. +++......+|.+ +.+.+++..|+..|++.... ++.+.
T Consensus 23 v~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~-~~~~~~~~~a~~~L~~ls~~------~~~~~ 95 (529)
T 1jdh_A 23 TKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHH------REGLL 95 (529)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTS------HHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcC------chhHH
Confidence 3344577999999999999877543 3455556667764 45778999999999985331 22333
Q ss_pred HH-HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhccccccC---CccchHHHHHhcCCCC-CcHHHHHHHHhhchhhc
Q 003289 82 GL-QDSLNTLLKKFH-KGPPKVRTQISIAVAALAVHISAEDWG---GGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEV 155 (833)
Q Consensus 82 ~l-r~~Ll~~l~~~~-~~~~~v~~kL~~~la~l~~~~~~~~Wp---~~~~~~~l~~~~~~~~-~~~~~~L~iL~~l~Ee~ 155 (833)
.+ +...+..+.... .+...++...+.+|..+...... ... +.+.++.+++.+.+.. .........|..+...
T Consensus 96 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~- 173 (529)
T 1jdh_A 96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG- 173 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTT-HHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcc-hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC-
Confidence 22 223444444432 34567888888888888764321 110 0125677777776532 2233444455544321
Q ss_pred ccccccCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhccCCCCccccccchhHHHHHhccCCc--
Q 003289 156 FNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE-- 233 (833)
Q Consensus 156 ~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~~~~L~~~-- 233 (833)
.++.+..+.+. ...+.+++++...- .+.....+..++...... .-....+.....++.+...+.++
T Consensus 174 -------~~~~~~~i~~~--~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~~~~L~~ll~~~~~ 241 (529)
T 1jdh_A 174 -------NQESKLIILAS--GGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVC--SSNKPAIVEAGGMQALGLHLTDPSQ 241 (529)
T ss_dssp -------CHHHHHHHHHT--THHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTS--TTHHHHHHHTTHHHHHHTTTTSSCH
T ss_pred -------CHHHHHHHHHC--CCHHHHHHHHHhCC-hHHHHHHHHHHHHHHhcC--cccHHHHHHCCCHHHHHHHHhCCCh
Confidence 11122222111 22344455554321 123334444544433221 00011233456777888887653
Q ss_pred chHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhh
Q 003289 234 ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGD 301 (833)
Q Consensus 234 ~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~~ 301 (833)
++...++.+|..+....... . ....++|.++.+ + ...|.+.....+..+..++.
T Consensus 242 ~~~~~a~~~L~~l~~~~~~~------~---~~~~~i~~L~~l---l--~~~~~~v~~~a~~~L~~L~~ 295 (529)
T 1jdh_A 242 RLVQNCLWTLRNLSDAATKQ------E---GMEGLLGTLVQL---L--GSDDINVVTCAAGILSNLTC 295 (529)
T ss_dssp HHHHHHHHHHHHHHTTCTTC------S---CCHHHHHHHHHH---T--TCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCChhh------H---HHHhHHHHHHHH---H--cCCCHHHHHHHHHHHHHHhc
Confidence 56777888888777543211 1 112334443322 2 23455666666677776654
No 85
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=48.79 E-value=2.7e+02 Score=29.59 Aligned_cols=112 Identities=13% Similarity=0.173 Sum_probs=70.4
Q ss_pred CcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCCh-hhHHHHHHH
Q 003289 466 EWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDP-SILASVLSI 539 (833)
Q Consensus 466 ~w~~~Eaal~~l~~i~e~~~~~-----~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~-~~l~~~l~~ 539 (833)
+-.-.+.|.+++..++..-++. +...++.+++.|..-+ ++.++..++++++..+.. ++.. .....+++.
T Consensus 57 ~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~-~~~~~~~a~~aL~nLa~~----~~~~~~i~~g~i~~ 131 (457)
T 1xm9_A 57 NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTG-NAEIQKQLTGLLWNLSST----DELKEELIADALPV 131 (457)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTS----SSTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCC-CHHHHHHHHHHHHHHhcC----HHhHHHHHhccHHH
Confidence 3455688999999998742211 2356788888876323 688999999999988753 2221 233355555
Q ss_pred HHhcc--------CC---------CHHHHHHHHHHHHHHHHH--hhhhhh---cCHHHHHHHHHH
Q 003289 540 LTSGM--------ST---------SEDTAAAAALAFRHICDD--CRKKLC---GYLDGLYNVYRT 582 (833)
Q Consensus 540 l~~~l--------~~---------~~~v~~~A~~al~~l~~~--~~~~l~---~~l~~ll~~l~~ 582 (833)
|+..+ +. ...+...|+.++.++|.. ++..+. +-++.++..+..
T Consensus 132 Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~ 196 (457)
T 1xm9_A 132 LADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp HHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHH
T ss_pred HHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHh
Confidence 55555 11 113667999999999853 444454 346666666554
No 86
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=48.61 E-value=82 Score=30.32 Aligned_cols=136 Identities=15% Similarity=0.113 Sum_probs=79.3
Q ss_pred CCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHH
Q 003289 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSI 539 (833)
Q Consensus 465 ~~w~~~Eaal~~l~~i~e~~~~~-----~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~ 539 (833)
.+-.-.|.|.+++..++..-++. +...++.+++.|.+-+ ++.++..+..++...+..=...+ ......++.
T Consensus 64 ~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~-~~~~~e~a~~aL~nLS~~~~~k~---~i~~~~i~~ 139 (233)
T 3tt9_A 64 QNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTR-DLETKKQITGLLWNLSSNDKLKN---LMITEALLT 139 (233)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTSGGGHH---HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHcChhhHH---HHHhccHHH
Confidence 34456788999999998642221 2356778888775322 46677766655544432111001 233344444
Q ss_pred HHh-------ccCC----------CHHHHHHHHHHHHHHHH---Hhhhhhh--c-CHHHHHHHHHHHhcCcCCCCCCHhh
Q 003289 540 LTS-------GMST----------SEDTAAAAALAFRHICD---DCRKKLC--G-YLDGLYNVYRTAVNGEGSLKVSAED 596 (833)
Q Consensus 540 l~~-------~l~~----------~~~v~~~A~~al~~l~~---~~~~~l~--~-~l~~ll~~l~~~l~~~~~~~l~~~~ 596 (833)
|.. |..+ ...++..|+-++++++. +.|+.+. + -++.++..++.-.... +.+...
T Consensus 140 Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~---~~~~k~ 216 (233)
T 3tt9_A 140 LTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADY---QPDDKA 216 (233)
T ss_dssp HCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTT---CTTCHH
T ss_pred HHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcc---cchhHH
Confidence 433 2211 11499999999999974 5677775 2 3577777777655432 345556
Q ss_pred HHHHHHHHHHH
Q 003289 597 SLHLVEALSMV 607 (833)
Q Consensus 597 ~~~l~eai~~v 607 (833)
++..+.++-.+
T Consensus 217 ~En~v~~L~nL 227 (233)
T 3tt9_A 217 TENCVCILHNL 227 (233)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67766666544
No 87
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=48.11 E-value=63 Score=34.83 Aligned_cols=141 Identities=11% Similarity=0.114 Sum_probs=82.4
Q ss_pred CCcchhhHHHHHHHHhhcccCcc------ccccHHHHHhhccCCCC--hHHHHHHHHHHHHhchHHHhhCCCChhhH--H
Q 003289 465 NEWRPAEAALFCIRAISTYVSVV------EAEVMPQVMALLPKLPQ--QPQLLQTVCLTIGAYSKWFDAASSDPSIL--A 534 (833)
Q Consensus 465 ~~w~~~Eaal~~l~~i~e~~~~~------~~~~l~~l~~~l~~l~~--~~~v~~t~~~~ig~y~~~l~~~p~~~~~l--~ 534 (833)
.+....+.++.++..++...... ....++.+++.+..-.. ...++..++.++...+.++..+++..+.+ .
T Consensus 299 ~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~ 378 (458)
T 3nmz_A 299 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 378 (458)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHc
Confidence 45667788888888887643221 23456667776653221 12578888888887776554444311111 1
Q ss_pred HHHHHHHhccCCC-HHHHHHHHHHHHHHHH---HhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhc
Q 003289 535 SVLSILTSGMSTS-EDTAAAAALAFRHICD---DCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (833)
Q Consensus 535 ~~l~~l~~~l~~~-~~v~~~A~~al~~l~~---~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (833)
..++.++.-+.++ ..++..|+.++.+++. +.+..+.. ...+..+.+++..+ +.+.+.....++..+...
T Consensus 379 G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~--~G~I~~Lv~LL~s~-----~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 379 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWD--MGAVSMLKNLIHSK-----HKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp THHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHH--HTHHHHHHTTTTCS-----SHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHhCC-----CHHHHHHHHHHHHHHHcC
Confidence 2344455555544 3599999999999983 33333321 12344444455432 356678888888888766
Q ss_pred CC
Q 003289 611 LP 612 (833)
Q Consensus 611 ~~ 612 (833)
-|
T Consensus 452 ~p 453 (458)
T 3nmz_A 452 RP 453 (458)
T ss_dssp CS
T ss_pred CH
Confidence 54
No 88
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=44.14 E-value=1.6e+02 Score=28.87 Aligned_cols=136 Identities=10% Similarity=0.018 Sum_probs=83.9
Q ss_pred CCcchhhHHHHHHHHhhcccCccc------cccHHHHHhhcc-C-CC-ChHHHHHHHHHHHHhchHHHhhCCCChhhHHH
Q 003289 465 NEWRPAEAALFCIRAISTYVSVVE------AEVMPQVMALLP-K-LP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILAS 535 (833)
Q Consensus 465 ~~w~~~Eaal~~l~~i~e~~~~~~------~~~l~~l~~~l~-~-l~-~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~ 535 (833)
.+-.-.+.++-++..+++.+.... ...+..++..+. . +. ..+.++..++.++-.+..-. . ....
T Consensus 67 sN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~--~-----~~~~ 139 (278)
T 4ffb_C 67 SNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD--T-----SITQ 139 (278)
T ss_dssp SSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS--S-----SSHH
T ss_pred chHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc--C-----cHHH
Confidence 344556777777777776554321 112233333332 1 33 35788888888776654311 1 2456
Q ss_pred HHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhh---hcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcC
Q 003289 536 VLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKL---CGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 611 (833)
Q Consensus 536 ~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l---~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~ 611 (833)
++..+..++.+.. +++..+...+.++.+...... .+.++.++..+..++.. -+.+.|...++.++.+-..+
T Consensus 140 ~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d-----~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 140 SVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGH-----GDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTC-----SSHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhC-----CcHHHHHHHHHHHHHHHHHh
Confidence 6788888886643 488888888888887765432 24566777777777764 35788999999998887766
Q ss_pred C
Q 003289 612 P 612 (833)
Q Consensus 612 ~ 612 (833)
+
T Consensus 215 G 215 (278)
T 4ffb_C 215 G 215 (278)
T ss_dssp -
T ss_pred C
Confidence 5
No 89
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=42.12 E-value=2.1e+02 Score=26.39 Aligned_cols=198 Identities=12% Similarity=0.199 Sum_probs=121.2
Q ss_pred CCCcchhhHHHHHHHHhhcccCccccccHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhc
Q 003289 464 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 543 (833)
Q Consensus 464 ~~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~ 543 (833)
..-|.-.--|+..+..+++..++-..+.+..++-.+..-. -..+.+.....+|..+ .-+|+ .+.++++.++..
T Consensus 43 DDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksE-aIpltqeIa~a~G~la---~i~Pe---~v~~vVp~lfan 115 (253)
T 2db0_A 43 DDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSE-AIPLTQEIAKAFGQMA---KEKPE---LVKSMIPVLFAN 115 (253)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC-SHHHHHHHHHHHHHHH---HHCHH---HHHHHHHHHHHH
T ss_pred cHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcc-cCchHHHHHHHHhHHH---HhCHH---HHHhhHHHHHHH
Confidence 4568877888999999999887666677778877765322 1223444555666655 34676 899999999876
Q ss_pred c--CCCHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHH
Q 003289 544 M--STSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALE 621 (833)
Q Consensus 544 l--~~~~~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~ 621 (833)
. +++. .+..-+|++.++....+..+.. +..-+..++..+ +..++.-+.. .++++.... -
T Consensus 116 yrigd~k-ikIn~~yaLeeIaranP~l~~~----v~rdi~smltsk-----d~~Dkl~aLn----Fi~alGen~-----~ 176 (253)
T 2db0_A 116 YRIGDEK-TKINVSYALEEIAKANPMLMAS----IVRDFMSMLSSK-----NREDKLTALN----FIEAMGENS-----F 176 (253)
T ss_dssp SCCCSHH-HHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHTSCS-----SHHHHHHHHH----HHHTCCTTT-----H
T ss_pred HhcCCcc-ceecHHHHHHHHHHhChHHHHH----HHHHHHHHhcCC-----ChHHHHHHHH----HHHHHhccC-----c
Confidence 5 4555 8899999999999876665433 334444445432 2445554333 334443222 1
Q ss_pred HhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHhhcC-ChHHHHHHHH
Q 003289 622 MLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAW-DMRTMESLCR 700 (833)
Q Consensus 622 ~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~-~~~v~e~~~~ 700 (833)
.++.|.+.++..++...+. ..| ..+.+.+.++..- +| ++-+++...++.+.. +..|...+..
T Consensus 177 ~yv~PfLprL~aLL~D~de-----iVR--aSaVEtL~~lA~~----np------klRkii~~kl~e~~D~S~lv~~~V~e 239 (253)
T 2db0_A 177 KYVNPFLPRIINLLHDGDE-----IVR--ASAVEALVHLATL----ND------KLRKVVIKRLEELNDTSSLVNKTVKE 239 (253)
T ss_dssp HHHGGGHHHHHGGGGCSSH-----HHH--HHHHHHHHHHHTS----CH------HHHHHHHHHHHHCCCSCHHHHHHHHH
T ss_pred cccCcchHHHHHHHcCcch-----hhh--HHHHHHHHHHHHc----CH------HHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 5788888888887764321 122 2356667665442 22 234566666776654 3444555555
Q ss_pred HHHH
Q 003289 701 ACKY 704 (833)
Q Consensus 701 ~~~~ 704 (833)
.+.+
T Consensus 240 gL~r 243 (253)
T 2db0_A 240 GISR 243 (253)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 90
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=39.61 E-value=35 Score=35.39 Aligned_cols=104 Identities=10% Similarity=0.132 Sum_probs=68.8
Q ss_pred CCCcchhhHHHHHHHHhhcccCccccccH---HHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhHHHHHHHH
Q 003289 464 HNEWRPAEAALFCIRAISTYVSVVEAEVM---PQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 540 (833)
Q Consensus 464 ~~~w~~~Eaal~~l~~i~e~~~~~~~~~l---~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l 540 (833)
+.+...+--+...+..+++. + ++.+ +.+.+-+.. .+|.+|..++.++++.. .|+ .++.+...+
T Consensus 79 s~d~~lKrLvYLyl~~~~~~-~---~e~iLv~Nsl~kDl~~--~N~~iR~lALRtL~~I~-----~~~---m~~~l~~~l 144 (355)
T 3tjz_B 79 SNDPTLRRMCYLTIKEMSCI-A---EDVIIVTSSLTKDMTG--KEDSYRGPAVRALCQIT-----DST---MLQAIERYM 144 (355)
T ss_dssp CCCHHHHHHHHHHHHHHTTT-S---SCGGGGHHHHHHHHHS--SCHHHHHHHHHHHHHHC-----CTT---THHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCC-H---HHHHHHHHHHHhhcCC--CcHhHHHHHHHHHhcCC-----CHH---HHHHHHHHH
Confidence 34555555555555556665 1 2222 222222222 36899999999999874 465 888999999
Q ss_pred HhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhc
Q 003289 541 TSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 585 (833)
Q Consensus 541 ~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~ 585 (833)
-+++.+++ .|+..|+.+..+++...++.+..+ ++.+.+++.
T Consensus 145 k~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~----~~~l~~ll~ 186 (355)
T 3tjz_B 145 KQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRW----VNEAQEAAS 186 (355)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTT----HHHHHHHTT
T ss_pred HHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHH----HHHHHHHhc
Confidence 99987754 499999999999987776655444 445555554
No 91
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=38.29 E-value=86 Score=26.57 Aligned_cols=51 Identities=20% Similarity=0.084 Sum_probs=34.4
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHHHH
Q 003289 13 ALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRS 66 (833)
Q Consensus 13 ~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ 66 (833)
.+...+|+..|..|-..|-.+. .+++......+|.+ .++.||..++..|.+
T Consensus 49 ~~L~d~~~~vR~~A~~aL~~~~-~~~a~~~L~~~L~d--~~~~VR~~A~~aL~~ 99 (131)
T 1te4_A 49 ESLSNEDWRIRGAAAWIIGNFQ-DERAVEPLIKLLED--DSGFVRSGAARSLEQ 99 (131)
T ss_dssp HGGGCSCHHHHHHHHHHHGGGC-SHHHHHHHHHHHHH--CCTHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHcC--CCHHHHHHHHHHHHH
Confidence 3335667777877777777765 45666666667754 456778888777764
No 92
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=37.74 E-value=2.5e+02 Score=26.01 Aligned_cols=131 Identities=7% Similarity=0.033 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHh----hcc--CCCChHHHHHHHHHHH
Q 003289 443 DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMA----LLP--KLPQQPQLLQTVCLTI 516 (833)
Q Consensus 443 ~~~l~~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~----~l~--~l~~~~~v~~t~~~~i 516 (833)
.+++.++.+.+.+.+... ..++..+...+..+.++.+.=.-.-+.++.+++. .+. ++... .+|.-+..++
T Consensus 39 ~~LlPyf~~fI~~~v~~n---l~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~-~LRd~AA~lL 114 (196)
T 4atg_A 39 QQLVPYFIQHISELILKS---FKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDD-DVRKMSADIV 114 (196)
T ss_dssp TTTHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCH-HHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHH-HHHHHHHHHH
Confidence 346666666665554432 3467777777777777765433223445555554 432 45433 8999999999
Q ss_pred HhchHHHhh-CCCChhhHHHHHHHHHhccCCCH---HHHHHHHHHHHHHHHHh-hhhhhcCHHHHHHHH
Q 003289 517 GAYSKWFDA-ASSDPSILASVLSILTSGMSTSE---DTAAAAALAFRHICDDC-RKKLCGYLDGLYNVY 580 (833)
Q Consensus 517 g~y~~~l~~-~p~~~~~l~~~l~~l~~~l~~~~---~v~~~A~~al~~l~~~~-~~~l~~~l~~ll~~l 580 (833)
+..++-+.. +|. +-+.+...+.+.+.+|. ....-|-.++..+-.+. +.-+.|.++.+.+.+
T Consensus 115 ~~I~~~~~~~y~~---L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~~~vr~~llP~l~~~~~~~ 180 (196)
T 4atg_A 115 KYIYDTYSRSYKT---LAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSKNVVNTVIREHAEEYKRTI 180 (196)
T ss_dssp HHHHHHHTTTSTT---HHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCHHHHHTHHHHHHHHHHHHT
T ss_pred HHHHHHhCccCch---HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHHHHHHHhhhcCHHHHHHHH
Confidence 998886554 354 78888888888887653 46667777777775544 444558877766543
No 93
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=37.01 E-value=1.3e+02 Score=35.41 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCCh
Q 003289 550 TAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ 613 (833)
Q Consensus 550 v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~ 613 (833)
||..|+.|+..+|.... ...+++.+..+... -+...|...+.|+|.|....++
T Consensus 628 VR~gAalALGli~aGn~------~~~aid~L~~L~~D-----~d~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 628 VRCGTAFALGIACAGKG------LQSAIDVLDPLTKD-----PVDFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp HHHHHHHHHHHHTSSSC------CHHHHHHHHHHHTC-----SSHHHHHHHHHHHHHHSTTCCT
T ss_pred HHHHHHHHHHHhccCCC------cHHHHHHHHHHccC-----CCHHHHHHHHHHHHHHhcCCcc
Confidence 55555555555442211 13344455554432 2456677777777766655443
No 94
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=36.63 E-value=4.9e+02 Score=29.07 Aligned_cols=109 Identities=9% Similarity=0.098 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcc-ccccHHHHHhhccCCCChHHHHHHHHHHHHh----
Q 003289 444 ATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPKLPQQPQLLQTVCLTIGA---- 518 (833)
Q Consensus 444 ~~l~~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~-~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~---- 518 (833)
+.++.+.+.+.. +.--.++.+|+.++.+++...+.. .+..++.+++.|..-..+..+.+.+++++..
T Consensus 21 etI~~L~~Rl~~--------~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~ 92 (651)
T 3grl_A 21 ETIQKLCDRVAS--------STLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISN 92 (651)
T ss_dssp HHHHHHHHHHHH--------CCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHhh--------ccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 344445555543 233567888999999888776654 2345677777766444444444455554422
Q ss_pred --------------------chHHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhh
Q 003289 519 --------------------YSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRK 567 (833)
Q Consensus 519 --------------------y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~ 567 (833)
+++.|-.+++ .++.++ ..+...+ .++..|...+..+|...++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~---~i~~Ll----~lL~~~df~vR~~alqlL~~L~~~r~~ 155 (651)
T 3grl_A 93 DEEEEVEENSTRQSEDLGSQFTEIFIKQQE---NVTLLL----SLLEEFDFHVRWPGVKLLTSLLKQLGP 155 (651)
T ss_dssp C--------------CHHHHHHHHHHHSTH---HHHHHH----HHTTCCCHHHHHHHHHHHHHHHHHSHH
T ss_pred CCcccccccccccchHHHHHHHHHHHcCCc---cHHHHH----HHhcCccHHHHHHHHHHHHHHHhcCcH
Confidence 1222222232 344444 4445443 5899999999999976544
No 95
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=32.21 E-value=5.5e+02 Score=28.34 Aligned_cols=327 Identities=11% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhccCCCChHHHHHHHHHHHHhch
Q 003289 446 LKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYS 520 (833)
Q Consensus 446 l~~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~-----~~~~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~ 520 (833)
++.+.+.|. +.+-...+.|..++..++..-.+. +...++.+++.|.+ .++.++..+++.++..+
T Consensus 50 i~~LV~~L~---------s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s--~~~~vq~~Aa~AL~nLa 118 (584)
T 3l6x_A 50 LPEVIAMLG---------FRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH--PKKEVHLGACGALKNIS 118 (584)
T ss_dssp HHHHHHHTT---------CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC--SSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHC---------CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC--CCHHHHHHHHHHHHHHH
Q ss_pred HH--------HhhCCCChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH--HHhhhhhh-cCHHHHHHHHHHHhcCcCC
Q 003289 521 KW--------FDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHIC--DDCRKKLC-GYLDGLYNVYRTAVNGEGS 589 (833)
Q Consensus 521 ~~--------l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~--~~~~~~l~-~~l~~ll~~l~~~l~~~~~ 589 (833)
.. +.... -++.++.++-++ .+.. ++..|+.++.+++ .+.+..+. .-++.|++.+..-..+-..
T Consensus 119 ~~~~~~nk~~I~~~G----aIp~LV~LL~s~-~~~~-~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~ 192 (584)
T 3l6x_A 119 FGRDQDNKIAIKNCD----GVPALVRLLRKA-RDMD-LTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWER 192 (584)
T ss_dssp SSSCHHHHHHHHHTT----HHHHHHHHHHHC-CSHH-HHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC-
T ss_pred ccCCHHHHHHHHHcC----CHHHHHHHHcCC-CCHH-HHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccc
Q ss_pred CCC---------CHhhHHHHHHHHHHHHhcCChHHHH-HHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHH
Q 003289 590 LKV---------SAEDSLHLVEALSMVITELPQVDAK-KALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAY 659 (833)
Q Consensus 590 ~~l---------~~~~~~~l~eai~~vi~~~~~~~~~-~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 659 (833)
... +.+.+.....++..+...-++.+.. .-...++.+++.-++..+..... +.......+..|..|+.
T Consensus 193 ~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~--~~~~~enav~aL~NLs~ 270 (584)
T 3l6x_A 193 EPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDS--DSKLVENCVCLLRNLSY 270 (584)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCC--SCHHHHHHHHHHHHHHT
T ss_pred cccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCc--cHHHHHHHHHHHHHhhc
Q ss_pred hhh--------------------ccCCcccHHHHHH-HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhhhhh-----
Q 003289 660 IFR--------------------YVNHPEAVADAIQ-RLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFM----- 713 (833)
Q Consensus 660 ~~~--------------------~~~~~~~~~~~~~-~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~~~~~~----- 713 (833)
-.. ....++.+...++ ...+.+..++.. ..++.+.|+++.++......-++..
T Consensus 271 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~-s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~ 349 (584)
T 3l6x_A 271 QVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKE-SKTPAILEASAGAIQNLCAGRWTYGRYIRS 349 (584)
T ss_dssp THHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHSSCSHHHHHHHH
T ss_pred cccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHcCCccccHHHHH
Q ss_pred ----hhhHHHHHHHHHHHHhhcCCccHhhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhhcccccCCc---CCchHH
Q 003289 714 ----GITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTS---RPDVAD 786 (833)
Q Consensus 714 ----~~~l~~l~~~l~~~~~~~~~~~~L~~~~~li~~fg~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~---~pd~~~ 786 (833)
..-+|.+++++ .++....+.-+...+.....++.....+. ...+...+.+|........ ..+++.
T Consensus 350 ~v~~~~glp~Lv~LL-----~s~~~~v~~~A~~aL~nLs~~~~~~~~I~---~g~ip~LV~LL~~~~~~~~~~~s~~v~~ 421 (584)
T 3l6x_A 350 ALRQEKALSAIADLL-----TNEHERVVKAASGALRNLAVDARNKELIG---KHAIPNLVKNLPGGQQNSSWNFSEDTVI 421 (584)
T ss_dssp HHTSHHHHHHHHHGG-----GCSCHHHHHHHHHHHHHHHTTCSCHHHHH---HHHHHHHHHTSSSSSCSGGGTCCHHHHH
T ss_pred HHHHcCcHHHHHHHH-----cCCCHHHHHHHHHHHHHHhCChhHHHHHH---hCCHHHHHHHhcCCcccccccchHHHHH
Q ss_pred HHHHHHHHHHhhCC
Q 003289 787 DCFLLASRCIRYCP 800 (833)
Q Consensus 787 ~~f~l~~~~~~~~p 800 (833)
.....+..++...|
T Consensus 422 ~a~~tL~NL~a~~~ 435 (584)
T 3l6x_A 422 SILNTINEVIAENL 435 (584)
T ss_dssp HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcCCH
No 96
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=31.17 E-value=2.1e+02 Score=25.67 Aligned_cols=68 Identities=12% Similarity=0.113 Sum_probs=39.8
Q ss_pred HHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCH--HHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHH
Q 003289 534 ASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYL--DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALS 605 (833)
Q Consensus 534 ~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l--~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~ 605 (833)
..++..+..-+.+++ .++.+|-..+..+++.|...+...+ ..+++.+..++.. +.....+.++.+-+-
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~----~~~~~Vk~kil~li~ 121 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKN----KAHPKVCEKLKSLMV 121 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHT----TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHcc----CCCHHHHHHHHHHHH
Confidence 444555554454432 3889999999999999987665332 2355555555542 233455555555443
No 97
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=30.64 E-value=2.7e+02 Score=24.26 Aligned_cols=84 Identities=14% Similarity=0.146 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhhcCC---ccHhhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHH
Q 003289 718 GAILEEIQGLYQQHQQ---PCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASR 794 (833)
Q Consensus 718 ~~l~~~l~~~~~~~~~---~~~L~~~~~li~~fg~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~ 794 (833)
..+++.+...+..++- -..||++.+|+...|.. +...|...+..++..++.. -+++......+++..
T Consensus 42 ~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~--y~~~F~~~l~~~f~~~~~~--------~d~~~r~k~~rL~~~ 111 (144)
T 1sz9_A 42 QYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSP--YTIYFSRNLFNLYKRTYLL--------VDNTTRTKLINMFKL 111 (144)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTT--HHHHHHTTHHHHHHHHHHT--------SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHHh--------CCHHHHHHHHHHHHH
Confidence 3444444444544332 27799999999998864 6666666555555554421 246677777777776
Q ss_pred HHhhCCC--ccCCcCCcHH
Q 003289 795 CIRYCPQ--LFIPSSVFPS 811 (833)
Q Consensus 795 ~~~~~p~--~~~~~~~l~~ 811 (833)
=-+..|. .+++++.+..
T Consensus 112 W~~~~~~~~~vF~~~~l~~ 130 (144)
T 1sz9_A 112 WLNPNDTGLPLFEGSALEK 130 (144)
T ss_dssp HTSGGGCSSCSSCHHHHHH
T ss_pred HhCcccCCCCCCCHHHHHH
Confidence 5555443 3455444444
No 98
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=27.52 E-value=4.4e+02 Score=25.70 Aligned_cols=167 Identities=11% Similarity=0.124 Sum_probs=95.3
Q ss_pred CchHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHhhccccccCCc-----c
Q 003289 52 SNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLK-KFHKGPPKVRTQISIAVAALAVHISAEDWGGG-----G 125 (833)
Q Consensus 52 ~~~~vrffaa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~-~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~-----~ 125 (833)
.+..-+.-|...|...+.. .++.....-+.++.|+. ++...+..|..+....|..++.+....++.-. .
T Consensus 58 ~d~k~~~~ale~L~~~l~~-----~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~ 132 (266)
T 2of3_A 58 KDFKQHLAALDSLVRLADT-----SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSA 132 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHH-----CHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhh-----ChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 3556677788888887653 23333444444688776 34445666777877888777654432233210 1
Q ss_pred chHHHHHhcCCCCC-cHHHHHHHHhhchhhcccccccCChhHHHHHHHHHHHHHH-HHHHHHHhhhhh--hHHHHHHHHH
Q 003289 126 IVNWLRDEMNSHPE-FVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQME-VALSTLTACLHI--NELKEQVLEA 201 (833)
Q Consensus 126 ~~~~l~~~~~~~~~-~~~~~L~iL~~l~Ee~~~~~~~~~~~~r~~l~~~l~~~~~-~vl~~l~~~l~~--~~~~~~~l~~ 201 (833)
+++.+++.++.+.+ ..+..-.+++.+++ -+.+ .+++.+...+.+ ...+..++.+
T Consensus 133 ~lP~LveKlGd~k~~vR~~~r~il~~l~~----------------------v~~~~~v~~~l~~g~ksKN~R~R~e~l~~ 190 (266)
T 2of3_A 133 FVPYLLLKTGEAKDNMRTSVRDIVNVLSD----------------------VVGPLKMTPMLLDALKSKNARQRSECLLV 190 (266)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHH----------------------HHCHHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHH----------------------HCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 44555555543221 11222222222211 1112 366666666654 2567778888
Q ss_pred HHHHhhccCCCCccccccchhH---HHHHhccCCc--chHHHHHHHHHHHHhhhc
Q 003289 202 FASWLRLKHRIPGSVLASHPLV---LTALSSLHSE--ILSEASVNVISELIHYSA 251 (833)
Q Consensus 202 ~~~Wi~~~~~i~~~~~~~~~ll---~~~~~~L~~~--~~~~~a~~~l~~ii~~~~ 251 (833)
+.+-++-. +++. ...+ +.+...++++ +++++|+.|+.++....+
T Consensus 191 l~~li~~~-G~~~-----~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 191 IEYYITNA-GISP-----LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp HHHHHHHH-CSGG-----GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhc-CCCc-----cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 88877753 3432 2345 7777888764 689999999999996553
No 99
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=26.72 E-value=2.7e+02 Score=24.12 Aligned_cols=49 Identities=10% Similarity=0.106 Sum_probs=28.9
Q ss_pred HHHHHHHhccCC--CHHHHHHHHHHHHHHHHHhhhhhhcCH--HHHHHHHHHHh
Q 003289 535 SVLSILTSGMST--SEDTAAAAALAFRHICDDCRKKLCGYL--DGLYNVYRTAV 584 (833)
Q Consensus 535 ~~l~~l~~~l~~--~~~v~~~A~~al~~l~~~~~~~l~~~l--~~ll~~l~~~l 584 (833)
.++..+..-+.+ |. ++.+|...+..+++.|+..+...+ ..+++.+..++
T Consensus 42 ~a~rai~Krl~~~n~~-~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~ 94 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPH-VAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVL 94 (140)
T ss_dssp HHHHHHHHHHTCSSHH-HHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChH-HHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHh
Confidence 334444444443 34 888888888888899987665322 33444444444
No 100
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=24.87 E-value=2.9e+02 Score=26.21 Aligned_cols=77 Identities=5% Similarity=0.074 Sum_probs=47.4
Q ss_pred HHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcC--HHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhc
Q 003289 534 ASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGY--LDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (833)
Q Consensus 534 ~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~--l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (833)
..++..+..-+.+++ .++.+|...+..+++.|...+... -..+++.+..++.. ..+...+.++++-+-.-..+
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~----~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKR----QVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhcc----CCCHHHHHHHHHHHHHHHHH
Confidence 344444544444432 399999999999999998755422 22345555555532 24567788888777766666
Q ss_pred CChH
Q 003289 611 LPQV 614 (833)
Q Consensus 611 ~~~~ 614 (833)
.+.+
T Consensus 120 f~~~ 123 (226)
T 3zyq_A 120 FRNE 123 (226)
T ss_dssp TTTC
T ss_pred hCCC
Confidence 5543
No 101
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=24.04 E-value=1.3e+02 Score=25.40 Aligned_cols=47 Identities=15% Similarity=0.046 Sum_probs=37.7
Q ss_pred cCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHHH
Q 003289 16 HHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLR 65 (833)
Q Consensus 16 ~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L~ 65 (833)
..+|+..|..|-..|..+. .+++......++.+ .+..||..|+..|.
T Consensus 83 ~d~~~~VR~~A~~aL~~~~-~~~a~~~L~~~l~d--~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 83 EDDSGFVRSGAARSLEQIG-GERVRAAMEKLAET--GTGFARKVAVNYLE 129 (131)
T ss_dssp HHCCTHHHHHHHHHHHHHC-SHHHHHHHHHHTTS--CCTHHHHHHHHHGG
T ss_pred cCCCHHHHHHHHHHHHHhC-cHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 5678899999999999887 67788888888864 56789998887764
No 102
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=22.32 E-value=3.4e+02 Score=31.12 Aligned_cols=141 Identities=13% Similarity=0.095 Sum_probs=0.0
Q ss_pred cHHHHHhhccCCCChHHHHHHHHHHHHhchHHHhhCCCChhhH-HHH-----------HHHHHhccCCCH-HHHHHHHHH
Q 003289 491 VMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASV-----------LSILTSGMSTSE-DTAAAAALA 557 (833)
Q Consensus 491 ~l~~l~~~l~~l~~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l-~~~-----------l~~l~~~l~~~~-~v~~~A~~a 557 (833)
.++.+.+.+.+ .|..+++.++++++.++. +|+ -+ ..+ ++.++.-++..+ +++.+|+.|
T Consensus 607 a~~~L~~LL~s--~n~~VrrAA~elI~NL~~----~~e---~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagA 677 (778)
T 3opb_A 607 YWSTIENLMLD--ENVPLQRSTLELISNMMS----HPL---TIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAI 677 (778)
T ss_dssp HHHHHHHGGGC--SSHHHHHHHHHHHHHHHT----SGG---GTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHHHhC----CcH---HHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHH
Q ss_pred HHHHHHHhhh--hhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhh--hhhHHHHHH
Q 003289 558 FRHICDDCRK--KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLC--LPVVTPLQE 633 (833)
Q Consensus 558 l~~l~~~~~~--~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~--~p~~~~l~~ 633 (833)
|..++..... ...-.....++.+..++... .-+.+-+.+.+-.+..++...|.+.-...+..+. .++...+.+
T Consensus 678 LAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~---~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 754 (778)
T 3opb_A 678 FANIATTIPLIAKELLTKKELIENAIQVFADQ---IDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNM 754 (778)
T ss_dssp HHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHccccHHHHHHHHhcc---CCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHH
Q ss_pred HHhcCCCccc
Q 003289 634 IINQGPEILQ 643 (833)
Q Consensus 634 ~~~~~~~~~~ 643 (833)
++......++
T Consensus 755 ~lk~~~~~~e 764 (778)
T 3opb_A 755 SLKRGDSGPE 764 (778)
T ss_dssp HHSSSSSCSS
T ss_pred HHhCCCchHH
Done!