Query 003290
Match_columns 833
No_of_seqs 409 out of 3158
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 20:41:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003290.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003290hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0103 Molecular chaperones H 100.0 3E-125 6E-130 1035.1 62.6 704 1-774 1-727 (727)
2 KOG0100 Molecular chaperones G 100.0 1E-121 2E-126 941.9 58.1 581 2-682 37-644 (663)
3 KOG0104 Molecular chaperones G 100.0 8E-112 2E-116 928.3 68.9 758 2-776 23-838 (902)
4 PTZ00009 heat shock 70 kDa pro 100.0 2E-100 4E-105 903.2 71.4 583 1-681 4-614 (653)
5 PRK13410 molecular chaperone D 100.0 6.3E-99 1E-103 885.8 68.8 590 1-698 1-622 (668)
6 PTZ00400 DnaK-type molecular c 100.0 2.9E-97 6E-102 874.9 68.1 567 2-679 42-636 (663)
7 PRK13411 molecular chaperone D 100.0 1E-96 2E-101 870.0 71.2 570 1-680 1-600 (653)
8 PRK00290 dnaK molecular chaper 100.0 1.6E-95 3E-100 861.5 71.4 568 1-681 1-597 (627)
9 PLN03184 chloroplast Hsp70; Pr 100.0 5.4E-95 1.2E-99 855.7 70.3 568 2-680 40-635 (673)
10 PTZ00186 heat shock 70 kDa pre 100.0 1.5E-94 3.3E-99 844.5 70.5 568 2-678 28-622 (657)
11 CHL00094 dnaK heat shock prote 100.0 6.5E-94 1.4E-98 844.9 70.1 569 2-681 3-599 (621)
12 TIGR02350 prok_dnaK chaperone 100.0 8.3E-94 1.8E-98 844.5 70.3 565 2-679 1-593 (595)
13 KOG0101 Molecular chaperones H 100.0 1.2E-94 2.7E-99 805.1 49.2 583 1-682 7-615 (620)
14 TIGR01991 HscA Fe-S protein as 100.0 9.2E-91 2E-95 812.9 70.5 557 3-677 1-581 (599)
15 PF00012 HSP70: Hsp70 protein; 100.0 1E-90 2.2E-95 826.0 62.9 575 3-680 1-601 (602)
16 PRK05183 hscA chaperone protei 100.0 3E-89 6.5E-94 801.5 68.2 557 2-679 20-599 (616)
17 KOG0102 Molecular chaperones m 100.0 1.2E-86 2.5E-91 709.2 43.4 569 2-678 28-624 (640)
18 PRK01433 hscA chaperone protei 100.0 9.9E-84 2.1E-88 747.9 66.2 526 2-674 20-572 (595)
19 COG0443 DnaK Molecular chapero 100.0 5E-83 1.1E-87 737.6 57.8 547 2-680 6-577 (579)
20 PRK11678 putative chaperone; P 100.0 1.4E-55 2.9E-60 495.6 38.0 337 3-380 2-448 (450)
21 PRK13928 rod shape-determining 100.0 2.1E-38 4.5E-43 348.7 33.4 307 4-380 6-324 (336)
22 PRK13929 rod-share determining 100.0 6.7E-38 1.5E-42 343.6 31.1 305 3-377 6-324 (335)
23 PRK13927 rod shape-determining 100.0 3.6E-35 7.9E-40 323.3 30.3 305 3-379 7-324 (334)
24 TIGR00904 mreB cell shape dete 100.0 2.8E-34 6.1E-39 315.7 33.2 305 4-379 5-327 (333)
25 PRK13930 rod shape-determining 100.0 1.6E-33 3.6E-38 310.5 34.0 308 3-380 10-329 (335)
26 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 1.3E-30 2.8E-35 279.2 22.5 306 3-378 3-320 (326)
27 COG1077 MreB Actin-like ATPase 100.0 6.4E-28 1.4E-32 247.5 26.7 310 2-381 7-333 (342)
28 TIGR02529 EutJ ethanolamine ut 100.0 1.8E-28 4E-33 255.0 20.9 200 115-375 39-238 (239)
29 PRK15080 ethanolamine utilizat 100.0 2.7E-26 5.8E-31 243.0 27.9 202 115-377 66-267 (267)
30 TIGR01174 ftsA cell division p 99.9 5.5E-22 1.2E-26 221.4 27.0 194 151-376 158-371 (371)
31 PRK09472 ftsA cell division pr 99.9 1.1E-20 2.4E-25 213.4 26.6 195 154-379 169-388 (420)
32 COG0849 ftsA Cell division ATP 99.8 1.4E-16 3E-21 175.3 27.2 316 3-380 8-381 (418)
33 cd00012 ACTIN Actin; An ubiqui 99.6 4.6E-15 1E-19 166.0 17.4 236 117-379 76-347 (371)
34 COG4820 EutJ Ethanolamine util 99.6 5E-15 1.1E-19 141.3 8.8 196 120-376 76-271 (277)
35 PRK13917 plasmid segregation p 99.6 6.8E-13 1.5E-17 145.8 25.6 213 136-382 109-339 (344)
36 smart00268 ACTIN Actin. ACTIN 99.5 4.8E-14 1E-18 158.0 15.5 299 2-379 2-347 (373)
37 PTZ00280 Actin-related protein 99.3 2E-10 4.4E-15 130.2 26.1 206 138-356 103-337 (414)
38 TIGR01175 pilM type IV pilus a 99.3 3.7E-10 8.1E-15 125.4 22.9 183 150-377 142-347 (348)
39 PF00022 Actin: Actin; InterP 99.3 3.6E-11 7.8E-16 135.8 14.5 309 2-380 5-368 (393)
40 PF11104 PilM_2: Type IV pilus 99.2 2.7E-10 5.9E-15 125.7 18.1 182 151-377 136-339 (340)
41 TIGR03739 PRTRC_D PRTRC system 99.2 1.9E-09 4.2E-14 117.9 23.6 208 136-377 101-318 (320)
42 PTZ00452 actin; Provisional 99.2 1.5E-09 3.3E-14 121.0 20.5 217 137-378 100-348 (375)
43 PTZ00281 actin; Provisional 99.1 6.5E-10 1.4E-14 124.3 16.2 217 137-378 101-349 (376)
44 PTZ00004 actin-2; Provisional 99.1 1.4E-09 3.1E-14 121.7 18.3 217 137-378 101-351 (378)
45 PTZ00466 actin-like protein; P 99.1 4.5E-09 9.7E-14 117.4 19.2 216 137-378 106-353 (380)
46 COG4972 PilM Tfp pilus assembl 99.0 3.1E-07 6.8E-12 95.8 26.7 162 153-359 151-315 (354)
47 PF06406 StbA: StbA protein; 98.9 2E-08 4.3E-13 109.6 15.4 172 166-374 141-316 (318)
48 TIGR00241 CoA_E_activ CoA-subs 98.8 1.3E-07 2.7E-12 99.8 17.8 170 169-376 73-248 (248)
49 KOG0679 Actin-related protein 98.8 4.4E-07 9.6E-12 95.9 20.1 116 116-245 86-202 (426)
50 COG5277 Actin and related prot 98.6 1.6E-06 3.4E-11 97.8 17.4 98 137-245 106-204 (444)
51 TIGR03192 benz_CoA_bzdQ benzoy 98.6 2.6E-05 5.6E-10 82.4 25.0 70 306-379 218-288 (293)
52 PRK10719 eutA reactivating fac 98.4 7.2E-07 1.6E-11 98.7 9.5 163 138-344 89-268 (475)
53 PF07520 SrfB: Virulence facto 98.4 8.9E-05 1.9E-09 88.8 27.0 328 47-381 331-836 (1002)
54 TIGR03286 methan_mark_15 putat 98.3 9.4E-05 2E-09 81.2 23.2 180 169-378 220-402 (404)
55 COG1924 Activator of 2-hydroxy 98.3 0.00028 6E-09 75.6 24.8 179 169-379 211-390 (396)
56 TIGR02261 benz_CoA_red_D benzo 98.0 0.0022 4.8E-08 67.0 24.8 70 305-377 188-262 (262)
57 PF08841 DDR: Diol dehydratase 97.7 0.001 2.2E-08 68.3 14.4 189 161-377 106-329 (332)
58 COG4457 SrfB Uncharacterized p 97.6 0.01 2.3E-07 67.3 23.0 50 331-380 778-847 (1014)
59 KOG0676 Actin and related prot 97.6 0.0017 3.6E-08 71.1 15.8 191 138-356 100-315 (372)
60 TIGR02259 benz_CoA_red_A benzo 97.2 0.0091 2E-07 65.2 16.0 178 169-377 249-432 (432)
61 KOG0797 Actin-related protein 97.0 0.0048 1E-07 68.1 11.5 122 110-244 195-322 (618)
62 PF06277 EutA: Ethanolamine ut 96.9 0.0078 1.7E-07 67.3 11.6 88 140-234 88-178 (473)
63 PRK13317 pantothenate kinase; 96.7 0.047 1E-06 58.2 15.7 48 331-378 222-273 (277)
64 KOG0680 Actin-related protein 96.7 0.071 1.5E-06 56.1 16.1 102 137-243 93-198 (400)
65 COG1069 AraB Ribulose kinase [ 96.6 0.12 2.6E-06 58.6 18.3 215 154-383 232-482 (544)
66 PF02782 FGGY_C: FGGY family o 96.6 0.0023 4.9E-08 64.8 4.4 72 304-379 121-196 (198)
67 COG4819 EutA Ethanolamine util 96.5 0.016 3.4E-07 60.9 10.0 83 140-234 90-180 (473)
68 PF01869 BcrAD_BadFG: BadF/Bad 96.0 1.2 2.7E-05 47.4 21.7 69 306-377 198-271 (271)
69 PF14450 FtsA: Cell division p 95.9 0.015 3.4E-07 53.8 6.0 48 196-243 1-53 (120)
70 PRK15027 xylulokinase; Provisi 95.9 0.016 3.5E-07 67.4 7.6 83 298-384 356-439 (484)
71 PLN02669 xylulokinase 95.9 0.02 4.3E-07 67.6 8.2 72 306-379 421-492 (556)
72 TIGR01315 5C_CHO_kinase FGGY-f 95.9 0.023 5.1E-07 67.0 8.7 85 298-383 410-494 (541)
73 KOG0100 Molecular chaperones G 95.6 0.045 9.7E-07 59.0 8.3 106 628-775 538-643 (663)
74 KOG2517 Ribulose kinase and re 95.6 0.13 2.8E-06 58.6 12.5 54 330-384 413-466 (516)
75 PRK10854 exopolyphosphatase; P 95.4 0.43 9.3E-06 55.8 16.7 76 154-238 100-176 (513)
76 PRK00047 glpK glycerol kinase; 95.2 0.044 9.6E-07 64.0 7.9 52 331-383 403-454 (498)
77 PRK11031 guanosine pentaphosph 95.2 0.58 1.3E-05 54.5 17.0 77 153-238 94-171 (496)
78 TIGR01312 XylB D-xylulose kina 95.2 0.053 1.2E-06 63.1 8.4 53 331-384 390-442 (481)
79 KOG0677 Actin-related protein 95.2 0.58 1.3E-05 47.8 14.3 194 137-355 101-318 (389)
80 TIGR01311 glycerol_kin glycero 95.2 0.039 8.5E-07 64.3 7.2 53 331-384 399-451 (493)
81 TIGR01234 L-ribulokinase L-rib 95.0 0.057 1.2E-06 63.7 7.8 52 331-383 435-487 (536)
82 PRK04123 ribulokinase; Provisi 94.9 0.053 1.1E-06 64.2 7.4 74 306-383 413-490 (548)
83 PTZ00294 glycerol kinase-like 94.9 0.064 1.4E-06 62.8 8.0 52 331-383 406-457 (504)
84 COG1070 XylB Sugar (pentulose 94.8 0.68 1.5E-05 54.1 16.2 51 330-381 400-450 (502)
85 TIGR02628 fuculo_kin_coli L-fu 94.8 0.061 1.3E-06 62.3 7.5 52 331-383 393-444 (465)
86 PRK10331 L-fuculokinase; Provi 94.7 0.069 1.5E-06 61.9 7.6 83 298-384 358-441 (470)
87 PF14574 DUF4445: Domain of un 94.7 2.6 5.6E-05 47.5 19.5 60 292-352 289-348 (412)
88 TIGR03706 exo_poly_only exopol 94.6 0.59 1.3E-05 50.7 14.1 76 153-237 87-163 (300)
89 TIGR02627 rhamnulo_kin rhamnul 94.6 0.079 1.7E-06 61.1 7.6 52 331-384 387-438 (454)
90 KOG2531 Sugar (pentulose and h 94.6 0.086 1.9E-06 58.0 7.2 56 323-379 434-489 (545)
91 PLN02295 glycerol kinase 94.6 0.081 1.7E-06 62.0 7.7 52 331-383 412-463 (512)
92 TIGR01314 gntK_FGGY gluconate 94.4 0.085 1.8E-06 61.8 7.5 52 331-383 401-452 (505)
93 PRK09604 UGMP family protein; 94.1 3.9 8.6E-05 45.0 19.2 58 314-376 242-305 (332)
94 PRK10640 rhaB rhamnulokinase; 94.0 0.13 2.7E-06 59.7 7.7 52 331-384 375-426 (471)
95 PRK09557 fructokinase; Reviewe 94.0 2.8 6.1E-05 45.4 17.6 44 163-211 96-139 (301)
96 PRK10939 autoinducer-2 (AI-2) 94.0 0.12 2.6E-06 60.8 7.4 52 331-383 409-460 (520)
97 COG0248 GppA Exopolyphosphatas 93.9 0.97 2.1E-05 52.1 14.3 95 112-212 49-147 (492)
98 PF13941 MutL: MutL protein 93.6 0.35 7.7E-06 54.8 9.9 42 3-50 2-45 (457)
99 TIGR00555 panK_eukar pantothen 93.2 1.4 3E-05 47.0 13.1 46 330-375 229-278 (279)
100 PF01968 Hydantoinase_A: Hydan 93.2 0.26 5.6E-06 53.2 7.8 67 306-375 216-283 (290)
101 PRK09698 D-allose kinase; Prov 93.2 13 0.00028 40.2 21.2 43 163-211 104-146 (302)
102 KOG0681 Actin-related protein 93.1 0.64 1.4E-05 52.4 10.6 120 116-245 95-216 (645)
103 COG1548 Predicted transcriptio 92.5 0.65 1.4E-05 47.6 8.9 73 122-212 76-148 (330)
104 PF02541 Ppx-GppA: Ppx/GppA ph 92.4 0.87 1.9E-05 49.0 10.6 74 156-238 77-151 (285)
105 smart00842 FtsA Cell division 92.2 0.7 1.5E-05 46.3 8.9 28 152-179 158-185 (187)
106 TIGR00744 ROK_glcA_fam ROK fam 91.6 2.9 6.3E-05 45.6 13.8 93 114-211 33-140 (318)
107 PTZ00297 pantothenate kinase; 91.3 17 0.00037 47.8 22.0 73 304-377 1365-1444(1452)
108 PLN02666 5-oxoprolinase 91.3 2.3 5.1E-05 54.5 13.9 62 312-376 469-531 (1275)
109 PRK05082 N-acetylmannosamine k 90.9 26 0.00056 37.6 23.7 48 331-378 233-287 (291)
110 PTZ00288 glucokinase 1; Provis 90.2 7.6 0.00016 43.8 15.4 19 2-20 27-45 (405)
111 KOG0681 Actin-related protein 90.1 0.27 5.9E-06 55.2 3.8 66 314-379 539-614 (645)
112 PF07318 DUF1464: Protein of u 89.7 5.6 0.00012 43.3 13.2 53 330-383 259-319 (343)
113 PLN02914 hexokinase 88.6 54 0.0012 38.0 21.3 54 153-213 208-263 (490)
114 PRK00290 dnaK molecular chaper 88.5 1.4 3E-05 53.1 8.6 68 687-772 527-594 (627)
115 PRK09585 anmK anhydro-N-acetyl 88.5 4.8 0.0001 44.6 11.9 71 306-379 264-338 (365)
116 PTZ00009 heat shock 70 kDa pro 88.3 3.4 7.3E-05 50.0 11.7 77 685-774 537-613 (653)
117 TIGR03723 bact_gcp putative gl 87.5 25 0.00054 38.4 16.8 56 314-374 247-308 (314)
118 KOG0101 Molecular chaperones H 87.4 1.1 2.5E-05 52.2 6.6 80 681-775 535-614 (620)
119 PTZ00400 DnaK-type molecular c 87.4 2.3 5E-05 51.4 9.5 70 686-773 567-636 (663)
120 TIGR02350 prok_dnaK chaperone 87.1 2 4.3E-05 51.5 8.7 68 687-772 525-592 (595)
121 PRK09605 bifunctional UGMP fam 87.0 72 0.0016 37.6 25.4 63 314-381 233-301 (535)
122 COG2192 Predicted carbamoyl tr 86.9 67 0.0015 37.2 22.0 210 162-381 109-337 (555)
123 PLN03184 chloroplast Hsp70; Pr 85.9 4.3 9.4E-05 49.2 10.7 68 687-772 566-633 (673)
124 PRK13411 molecular chaperone D 84.8 3.7 8E-05 49.6 9.5 71 686-772 528-598 (653)
125 PF03702 UPF0075: Uncharacteri 84.1 2.6 5.6E-05 46.8 7.1 71 304-379 260-337 (364)
126 smart00732 YqgFc Likely ribonu 84.1 0.89 1.9E-05 40.1 2.9 21 1-21 1-21 (99)
127 PRK14878 UGMP family protein; 82.8 79 0.0017 34.6 19.3 40 332-371 242-287 (323)
128 CHL00094 dnaK heat shock prote 82.8 5.3 0.00011 48.1 9.6 68 687-772 529-596 (621)
129 COG0554 GlpK Glycerol kinase [ 82.6 4 8.7E-05 46.0 7.7 80 298-384 371-454 (499)
130 COG2377 Predicted molecular ch 81.4 15 0.00034 40.1 11.3 165 193-380 162-344 (371)
131 PF03652 UPF0081: Uncharacteri 81.1 1.6 3.4E-05 41.3 3.5 22 1-22 1-22 (135)
132 KOG0104 Molecular chaperones G 80.7 6.7 0.00015 46.3 8.8 60 675-736 649-709 (902)
133 PTZ00107 hexokinase; Provision 80.3 90 0.0019 36.0 17.8 80 300-381 370-461 (464)
134 PF08735 DUF1786: Putative pyr 80.3 14 0.00031 38.5 10.3 97 134-238 111-209 (254)
135 PLN02939 transferase, transfer 79.0 58 0.0013 40.7 16.5 180 579-762 237-426 (977)
136 PF12238 MSA-2c: Merozoite sur 78.7 7.8 0.00017 38.9 7.5 10 614-623 14-23 (205)
137 TIGR03281 methan_mark_12 putat 77.7 9.1 0.0002 40.8 8.0 173 171-383 129-315 (326)
138 PRK14101 bifunctional glucokin 75.7 90 0.002 37.7 17.1 50 306-355 244-296 (638)
139 PF00012 HSP70: Hsp70 protein; 74.6 11 0.00024 45.1 9.0 76 680-772 524-599 (602)
140 PRK07058 acetate kinase; Provi 74.4 20 0.00043 40.1 10.0 47 306-356 297-344 (396)
141 COG5026 Hexokinase [Carbohydra 74.1 15 0.00032 41.1 8.7 18 2-19 76-93 (466)
142 PTZ00340 O-sialoglycoprotein e 72.7 1.6E+02 0.0034 32.6 18.0 40 311-355 248-287 (345)
143 COG0145 HyuA N-methylhydantoin 72.6 4.8 0.0001 48.4 5.1 43 166-212 254-296 (674)
144 PLN02596 hexokinase-like 72.3 2E+02 0.0043 33.5 22.7 82 300-382 392-486 (490)
145 COG0533 QRI7 Metal-dependent p 72.2 1.5E+02 0.0033 32.5 15.7 51 300-355 231-285 (342)
146 KOG1385 Nucleoside phosphatase 72.0 15 0.00032 40.8 8.1 75 110-212 152-231 (453)
147 PRK01433 hscA chaperone protei 70.7 14 0.0003 44.2 8.4 74 688-772 510-584 (595)
148 PLN02920 pantothenate kinase 1 70.2 47 0.001 37.1 11.5 49 330-378 296-351 (398)
149 PF00370 FGGY_N: FGGY family o 68.9 4.4 9.4E-05 42.4 3.3 19 3-21 2-20 (245)
150 PRK00976 hypothetical protein; 68.6 17 0.00038 39.4 7.8 50 331-382 263-314 (326)
151 cd06007 R3H_DEXH_helicase R3H 68.1 14 0.00031 29.4 5.2 37 130-168 9-45 (59)
152 PLN02362 hexokinase 67.8 22 0.00047 41.4 8.9 31 153-183 208-240 (509)
153 PRK00109 Holliday junction res 67.7 5 0.00011 38.1 3.1 21 1-21 4-24 (138)
154 COG1940 NagC Transcriptional r 67.2 73 0.0016 34.5 12.7 38 163-204 106-143 (314)
155 COG0816 Predicted endonuclease 66.0 5.8 0.00013 37.6 3.2 22 1-22 2-23 (141)
156 COG4012 Uncharacterized protei 65.5 1.8E+02 0.0039 30.5 17.8 92 144-246 186-277 (342)
157 PRK03011 butyrate kinase; Prov 65.3 10 0.00023 42.1 5.5 45 331-375 295-343 (358)
158 PRK05183 hscA chaperone protei 65.0 32 0.00068 41.4 9.9 66 688-771 532-597 (616)
159 PRK02224 chromosome segregatio 64.7 1.2E+02 0.0025 38.3 15.5 71 578-649 145-215 (880)
160 PF11593 Med3: Mediator comple 64.5 1.6E+02 0.0034 32.4 13.7 84 641-743 9-92 (379)
161 cd02640 R3H_NRF R3H domain of 63.6 20 0.00044 28.6 5.4 42 126-168 5-46 (60)
162 PRK13410 molecular chaperone D 63.5 26 0.00055 42.6 8.8 71 685-770 527-598 (668)
163 PF02543 CmcH_NodU: Carbamoylt 62.2 61 0.0013 36.1 10.9 81 297-382 132-216 (360)
164 cd00529 RuvC_resolvase Hollida 61.6 1E+02 0.0022 29.7 11.0 30 195-224 1-30 (154)
165 PLN02405 hexokinase 60.7 50 0.0011 38.4 10.0 53 152-211 207-261 (497)
166 TIGR03722 arch_KAE1 universal 58.6 2.8E+02 0.006 30.3 20.5 41 332-372 243-289 (322)
167 PTZ00294 glycerol kinase-like 58.0 8.8 0.00019 44.9 3.5 22 1-22 1-23 (504)
168 PRK00180 acetate kinase A/prop 57.6 62 0.0013 36.5 9.8 48 306-356 301-349 (402)
169 COG1070 XylB Sugar (pentulose 56.4 12 0.00025 43.9 4.1 20 2-21 5-24 (502)
170 PRK10939 autoinducer-2 (AI-2) 56.3 9.8 0.00021 44.7 3.5 19 3-21 5-23 (520)
171 PF14450 FtsA: Cell division p 56.1 16 0.00034 33.7 4.2 20 3-22 1-20 (120)
172 TIGR00329 gcp_kae1 metallohydr 56.0 3E+02 0.0064 29.8 15.5 39 312-355 244-282 (305)
173 TIGR00143 hypF [NiFe] hydrogen 55.6 22 0.00049 43.2 6.4 48 331-378 658-711 (711)
174 PRK13318 pantothenate kinase; 55.4 12 0.00025 39.7 3.6 20 3-22 2-21 (258)
175 TIGR01991 HscA Fe-S protein as 55.1 60 0.0013 38.9 10.0 64 690-771 518-581 (599)
176 TIGR03123 one_C_unchar_1 proba 54.6 8.9 0.00019 41.7 2.6 52 299-358 246-301 (318)
177 PRK13310 N-acetyl-D-glucosamin 54.4 2.2E+02 0.0047 30.6 13.5 45 162-211 95-139 (303)
178 PRK13321 pantothenate kinase; 54.1 12 0.00027 39.4 3.5 19 3-21 2-20 (256)
179 PF00349 Hexokinase_1: Hexokin 53.7 38 0.00083 34.5 6.9 51 193-246 62-117 (206)
180 PRK10331 L-fuculokinase; Provi 53.6 10 0.00022 43.9 3.1 19 3-21 4-22 (470)
181 TIGR02628 fuculo_kin_coli L-fu 52.2 11 0.00024 43.6 3.1 20 2-21 2-21 (465)
182 PRK04863 mukB cell division pr 51.0 7.7E+02 0.017 33.1 20.0 116 635-770 364-483 (1486)
183 TIGR00016 ackA acetate kinase. 49.7 1.1E+02 0.0023 34.6 10.0 48 306-356 305-353 (404)
184 PRK15027 xylulokinase; Provisi 49.6 14 0.0003 43.1 3.3 19 3-21 2-20 (484)
185 PRK00039 ruvC Holliday junctio 49.4 13 0.00028 36.4 2.6 37 1-37 2-38 (164)
186 TIGR01314 gntK_FGGY gluconate 49.2 14 0.00031 43.2 3.4 19 3-21 2-20 (505)
187 PLN02377 3-ketoacyl-CoA syntha 48.6 40 0.00086 39.2 6.7 56 303-358 165-221 (502)
188 TIGR02259 benz_CoA_red_A benzo 48.0 17 0.00037 40.5 3.4 20 3-22 4-23 (432)
189 TIGR01315 5C_CHO_kinase FGGY-f 47.6 16 0.00035 43.2 3.5 19 3-21 2-20 (541)
190 PLN02295 glycerol kinase 47.3 16 0.00035 42.9 3.4 19 3-21 2-20 (512)
191 TIGR01234 L-ribulokinase L-rib 47.1 18 0.00038 42.8 3.7 18 2-19 2-19 (536)
192 PRK04123 ribulokinase; Provisi 46.5 18 0.00038 42.9 3.6 17 3-19 5-21 (548)
193 PF00480 ROK: ROK family; Int 44.9 1.2E+02 0.0026 29.5 8.9 89 112-211 30-134 (179)
194 TIGR01311 glycerol_kin glycero 44.7 18 0.0004 42.1 3.4 19 3-21 3-21 (493)
195 PRK00047 glpK glycerol kinase; 44.0 19 0.00042 42.0 3.4 19 3-21 7-25 (498)
196 cd02641 R3H_Smubp-2_like R3H d 43.8 60 0.0013 25.9 5.1 30 139-168 17-46 (60)
197 PRK13317 pantothenate kinase; 43.4 26 0.00057 37.4 4.0 20 2-21 3-22 (277)
198 PF07765 KIP1: KIP1-like prote 43.0 89 0.0019 26.0 6.0 54 646-704 13-71 (74)
199 PRK12440 acetate kinase; Revie 42.7 59 0.0013 36.5 6.6 47 306-356 299-346 (397)
200 cd00529 RuvC_resolvase Hollida 42.6 30 0.00065 33.4 3.9 17 3-19 2-18 (154)
201 cd02646 R3H_G-patch R3H domain 42.5 55 0.0012 25.8 4.7 40 125-167 4-43 (58)
202 KOG3958 Putative dynamitin [Cy 41.7 2.8E+02 0.006 29.5 10.7 100 653-769 270-369 (371)
203 PTZ00186 heat shock 70 kDa pre 41.1 1.8E+02 0.004 35.2 11.1 68 688-772 555-622 (657)
204 COG2441 Predicted butyrate kin 41.0 1.9E+02 0.0042 30.6 9.4 53 330-383 272-336 (374)
205 KOG4603 TBP-1 interacting prot 40.3 1.3E+02 0.0028 29.2 7.5 72 659-730 89-166 (201)
206 PF09763 Sec3_C: Exocyst compl 39.7 5.8E+02 0.013 31.2 15.3 118 636-766 40-164 (701)
207 KOG0517 Beta-spectrin [Cytoske 38.9 9.9E+02 0.022 32.4 16.6 133 634-768 852-1002(2473)
208 cd02639 R3H_RRM R3H domain of 38.8 53 0.0012 26.2 4.1 30 139-168 17-46 (60)
209 PLN02902 pantothenate kinase 38.5 3.1E+02 0.0067 34.0 12.1 49 330-379 345-401 (876)
210 COG4755 Uncharacterized protei 38.5 3.1E+02 0.0068 25.3 9.2 81 636-730 11-97 (151)
211 PRK07157 acetate kinase; Provi 38.1 1.7E+02 0.0037 32.9 9.3 48 306-356 298-346 (400)
212 PRK13331 pantothenate kinase; 37.4 34 0.00073 36.0 3.6 22 1-22 7-28 (251)
213 PF07462 MSP1_C: Merozoite sur 37.2 7.3E+02 0.016 28.9 21.3 61 713-775 207-267 (574)
214 PLN02854 3-ketoacyl-CoA syntha 37.1 1.4E+02 0.003 34.9 8.8 46 313-358 191-237 (521)
215 PF10168 Nup88: Nuclear pore c 37.0 6.5E+02 0.014 30.9 14.8 10 140-149 108-117 (717)
216 PF07106 TBPIP: Tat binding pr 36.9 1.3E+02 0.0028 29.5 7.5 45 688-732 117-161 (169)
217 PF02801 Ketoacyl-synt_C: Beta 36.7 43 0.00092 30.6 3.8 47 311-357 24-72 (119)
218 PLN03173 chalcone synthase; Pr 36.6 91 0.002 35.2 7.1 50 309-358 101-151 (391)
219 PF04848 Pox_A22: Poxvirus A22 36.5 50 0.0011 31.5 4.2 20 1-20 1-20 (143)
220 KOG2708 Predicted metalloprote 36.2 2.4E+02 0.0051 29.0 9.0 43 309-356 237-279 (336)
221 PF03962 Mnd1: Mnd1 family; I 35.7 4.6E+02 0.01 26.2 12.9 113 576-735 56-168 (188)
222 KOG0250 DNA repair protein RAD 35.6 1E+03 0.023 30.2 16.2 112 657-769 756-883 (1074)
223 PLN03170 chalcone synthase; Pr 35.5 1.7E+02 0.0037 33.1 9.1 52 307-358 103-155 (401)
224 KOG1369 Hexokinase [Carbohydra 35.5 1.2E+02 0.0027 34.8 7.8 63 145-214 186-251 (474)
225 PF06840 DUF1241: Protein of u 35.2 2.3E+02 0.0051 27.3 8.4 33 667-701 12-44 (154)
226 PF03630 Fumble: Fumble ; Int 35.1 3.8E+02 0.0081 29.7 11.4 46 331-376 287-339 (341)
227 KOG1029 Endocytic adaptor prot 35.0 7.3E+02 0.016 30.2 13.8 16 658-673 446-461 (1118)
228 COG3426 Butyrate kinase [Energ 34.8 1.1E+02 0.0024 32.5 6.6 48 328-375 293-344 (358)
229 COG1521 Pantothenate kinase ty 34.7 2.6E+02 0.0055 29.5 9.5 114 176-344 111-225 (251)
230 PRK13326 pantothenate kinase; 34.1 40 0.00087 35.7 3.6 21 2-22 7-27 (262)
231 COG4296 Uncharacterized protei 34.0 97 0.0021 28.8 5.3 23 644-666 90-112 (156)
232 PF06785 UPF0242: Uncharacteri 33.9 2.8E+02 0.006 30.0 9.4 56 715-771 161-222 (401)
233 PLN03172 chalcone synthase fam 33.5 1E+02 0.0022 34.9 6.8 53 306-358 98-151 (393)
234 PLN02669 xylulokinase 33.5 36 0.00078 40.3 3.5 20 2-21 9-28 (556)
235 cd00176 SPEC Spectrin repeats, 33.4 3.9E+02 0.0084 26.1 10.7 39 728-770 118-156 (213)
236 TIGR02169 SMC_prok_A chromosom 33.2 6.7E+02 0.014 32.5 15.4 45 578-622 149-193 (1164)
237 PRK13324 pantothenate kinase; 32.5 44 0.00096 35.3 3.6 20 3-22 2-21 (258)
238 TIGR00250 RNAse_H_YqgF RNAse H 32.2 29 0.00064 32.5 1.9 17 4-20 1-17 (130)
239 KOG0678 Actin-related protein 31.5 3.2E+02 0.007 29.7 9.5 102 138-244 107-209 (415)
240 KOG0797 Actin-related protein 31.4 15 0.00033 41.6 -0.1 51 331-381 526-591 (618)
241 PF02075 RuvC: Crossover junct 31.4 2.6E+02 0.0057 26.7 8.4 29 196-224 1-29 (149)
242 PRK00292 glk glucokinase; Prov 31.0 43 0.00094 36.4 3.4 50 161-211 88-144 (316)
243 KOG0103 Molecular chaperones H 30.8 1.7E+02 0.0036 35.0 8.0 64 606-678 652-725 (727)
244 TIGR03185 DNA_S_dndD DNA sulfu 30.3 4.5E+02 0.0098 31.8 12.2 14 760-773 509-522 (650)
245 PLN03168 chalcone synthase; Pr 30.3 1.1E+02 0.0025 34.4 6.6 56 303-358 94-150 (389)
246 PF08580 KAR9: Yeast cortical 29.7 2.9E+02 0.0064 33.6 10.2 68 691-759 106-174 (683)
247 KOG1369 Hexokinase [Carbohydra 29.4 2.5E+02 0.0055 32.3 9.0 31 187-217 78-109 (474)
248 KOG0996 Structural maintenance 29.3 1.3E+03 0.029 29.6 15.5 168 581-772 404-585 (1293)
249 PRK04863 mukB cell division pr 29.2 1.6E+03 0.034 30.4 19.9 17 579-595 276-292 (1486)
250 TIGR02707 butyr_kinase butyrat 29.2 73 0.0016 35.4 4.7 44 331-374 293-340 (351)
251 PRK13320 pantothenate kinase; 29.0 57 0.0012 34.2 3.7 21 2-22 3-23 (244)
252 PF00349 Hexokinase_1: Hexokin 28.7 52 0.0011 33.5 3.2 32 152-183 170-204 (206)
253 PF14574 DUF4445: Domain of un 28.5 2E+02 0.0043 32.7 8.0 54 303-356 55-108 (412)
254 PRK12704 phosphodiesterase; Pr 27.8 5E+02 0.011 30.5 11.5 61 660-720 97-157 (520)
255 PRK13310 N-acetyl-D-glucosamin 27.5 1.2E+02 0.0026 32.6 6.1 47 331-377 245-300 (303)
256 COG4012 Uncharacterized protei 27.2 1.6E+02 0.0035 30.9 6.2 72 195-273 2-96 (342)
257 COG1196 Smc Chromosome segrega 27.2 8.4E+02 0.018 31.9 14.5 74 578-651 151-231 (1163)
258 PF06160 EzrA: Septation ring 27.0 7.5E+02 0.016 29.4 12.9 180 581-772 225-429 (560)
259 KOG2150 CCR4-NOT transcription 26.9 6.1E+02 0.013 29.8 11.3 30 618-652 39-68 (575)
260 PF00871 Acetate_kinase: Aceto 26.8 1.4E+02 0.0029 33.7 6.3 48 306-356 298-346 (388)
261 PF01044 Vinculin: Vinculin fa 26.6 1.1E+03 0.023 30.2 14.9 155 578-768 313-480 (968)
262 PRK00404 tatB sec-independent 26.5 4.6E+02 0.01 24.9 8.7 24 682-705 22-45 (141)
263 PF06705 SF-assemblin: SF-asse 26.3 7.6E+02 0.016 25.7 13.0 46 680-725 168-213 (247)
264 COG5665 NOT5 CCR4-NOT transcri 26.1 6.4E+02 0.014 27.8 10.6 29 619-652 30-58 (548)
265 PHA02566 alt ADP-ribosyltransf 25.7 1.2E+03 0.025 28.2 13.5 54 709-768 421-476 (684)
266 PHA02557 22 prohead core prote 25.6 6.6E+02 0.014 26.5 10.3 86 579-674 135-221 (271)
267 PF04065 Not3: Not1 N-terminal 25.0 5.2E+02 0.011 26.9 9.6 37 723-775 118-154 (233)
268 COG5418 Predicted secreted pro 24.7 2E+02 0.0042 27.3 5.7 70 266-339 29-104 (164)
269 COG3894 Uncharacterized metal- 24.7 2.2E+02 0.0047 32.8 7.2 46 194-239 164-210 (614)
270 PRK00106 hypothetical protein; 24.6 6.5E+02 0.014 29.6 11.5 74 642-720 99-172 (535)
271 TIGR00671 baf pantothenate kin 24.0 69 0.0015 33.5 3.2 47 298-344 173-219 (243)
272 PRK04778 septation ring format 23.9 1.3E+03 0.027 27.5 15.8 41 611-651 232-274 (569)
273 PF03309 Pan_kinase: Type III 23.8 73 0.0016 32.3 3.3 20 3-22 1-20 (206)
274 COG5026 Hexokinase [Carbohydra 23.7 88 0.0019 35.2 4.0 30 192-221 73-103 (466)
275 PF02075 RuvC: Crossover junct 23.7 37 0.0008 32.6 1.0 17 3-19 1-17 (149)
276 PF08006 DUF1700: Protein of u 23.6 1.5E+02 0.0033 29.2 5.5 56 613-676 5-61 (181)
277 PRK07515 3-oxoacyl-(acyl carri 23.6 73 0.0016 35.6 3.5 47 308-356 267-313 (372)
278 PF01150 GDA1_CD39: GDA1/CD39 23.5 95 0.0021 35.5 4.5 45 167-213 129-183 (434)
279 TIGR02168 SMC_prok_B chromosom 23.4 1.1E+03 0.023 30.6 14.8 46 578-623 151-196 (1179)
280 PLN02192 3-ketoacyl-CoA syntha 23.3 2E+02 0.0042 33.7 6.9 55 304-358 170-225 (511)
281 KOG1924 RhoA GTPase effector D 22.9 1.5E+03 0.032 27.9 16.9 34 676-709 412-445 (1102)
282 TIGR00634 recN DNA repair prot 22.7 1.3E+03 0.029 27.3 20.3 21 683-703 297-317 (563)
283 COG1940 NagC Transcriptional r 22.5 3.3E+02 0.0071 29.4 8.3 53 192-244 4-56 (314)
284 PRK12879 3-oxoacyl-(acyl carri 22.1 1.8E+02 0.0038 31.6 6.1 47 309-358 222-268 (325)
285 PF09286 Pro-kuma_activ: Pro-k 22.0 1.2E+02 0.0027 28.5 4.3 47 608-654 26-76 (143)
286 TIGR00067 glut_race glutamate 21.9 1.8E+02 0.0038 30.6 5.8 41 331-374 172-212 (251)
287 PF12795 MscS_porin: Mechanose 21.8 8.8E+02 0.019 25.1 11.0 88 629-732 10-98 (240)
288 TIGR03185 DNA_S_dndD DNA sulfu 21.7 1.1E+03 0.023 28.7 13.2 43 718-775 478-520 (650)
289 PF08392 FAE1_CUT1_RppA: FAE1/ 21.3 2.2E+02 0.0048 30.6 6.2 45 313-357 86-131 (290)
290 TIGR03319 YmdA_YtgF conserved 21.1 1.4E+03 0.03 26.9 14.4 61 660-720 91-151 (514)
291 PF15469 Sec5: Exocyst complex 21.1 5.8E+02 0.013 25.0 9.1 47 657-703 41-87 (182)
292 PF03484 B5: tRNA synthetase B 20.9 2.5E+02 0.0054 23.0 5.3 59 64-123 8-66 (70)
293 PRK06840 hypothetical protein; 20.8 2.2E+02 0.0047 31.2 6.5 48 311-358 54-104 (339)
294 KOG2517 Ribulose kinase and re 20.8 83 0.0018 36.5 3.2 17 3-19 8-24 (516)
295 PRK03918 chromosome segregatio 20.7 8.7E+02 0.019 30.5 12.7 147 581-730 608-754 (880)
296 cd00327 cond_enzymes Condensin 20.7 4.1E+02 0.0089 27.3 8.4 44 314-357 11-56 (254)
297 COG4052 Uncharacterized protei 20.5 2.3E+02 0.0049 29.1 5.7 54 715-768 195-248 (310)
298 TIGR02627 rhamnulo_kin rhamnul 20.1 51 0.0011 37.9 1.4 17 4-20 1-17 (454)
299 TIGR01312 XylB D-xylulose kina 20.1 64 0.0014 37.4 2.2 18 4-21 1-18 (481)
No 1
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-125 Score=1035.09 Aligned_cols=704 Identities=58% Similarity=0.899 Sum_probs=660.6
Q ss_pred CeEEEEEcCccceEEEEEECCceEEEcCCCCCccceEEEEEcCCceEecHhhhhhhccCCCchHHHHHHhhCCCCCCHHH
Q 003290 1 MSVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (833)
Q Consensus 1 m~viGID~GTt~s~va~~~~~~~~ii~n~~~~r~tPs~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~~ 80 (833)
|+|+|||||+.+|.+|+++.+++++|.|+.|+|.||++|+|..++|++|.+|.++..+|+.|++..+||++|+.|+||.+
T Consensus 1 msvvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~ 80 (727)
T KOG0103|consen 1 MSVVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEV 80 (727)
T ss_pred CCceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCceeeeCCCCceEEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHHHHHHH
Q 003290 81 QRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (833)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~~Aa 160 (833)
+.+.+++|+.++..+||.+++.+.|.|+.+.|++++|+||+|.+|+..|+..+..++.+|||+||+||++.||+++++||
T Consensus 81 q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA 160 (727)
T KOG0103|consen 81 QREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAA 160 (727)
T ss_pred hhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccEEeechhHHHHHHHhhhcCCCCC--CCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHH
Q 003290 161 TIAGLHPLRLFHETTATALAYGIYKTDLPE--NDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVL 238 (833)
Q Consensus 161 ~~AGl~~~~li~EptAaAl~y~~~~~~~~~--~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l 238 (833)
++|||++++||||.+|+||+||++++++|. .++++|+++|||++++.+|++.|..|++.++++.+|.++||++||..|
T Consensus 161 ~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L 240 (727)
T KOG0103|consen 161 RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEAL 240 (727)
T ss_pred hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHH
Confidence 999999999999999999999999999984 357999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCceeEEEeccccCccceEEecHHHHHHHHHHHHHHHHHHH
Q 003290 239 FQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPL 318 (833)
Q Consensus 239 ~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i 318 (833)
.+||+++|+.+|++++..|+++..||+.+||++|+.||+|...+++|+|++++.|++..|+|++||++|.|+++|+..++
T Consensus 241 ~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~ 320 (727)
T KOG0103|consen 241 IDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVPL 320 (727)
T ss_pred HHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhhcCCCcccceEEEeecccc
Q 003290 319 EKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFS 398 (833)
Q Consensus 319 ~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ls~~~~~~~~~~~d~~~~~ 398 (833)
..+|+++++..+||+.|++|||+||||.|++.|.++||+++.+++|.|||||+|||++||++||.||+|+|.++|+.||+
T Consensus 321 ~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~frVRef~v~Di~pys 400 (727)
T KOG0103|consen 321 LKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPTFRVREFSVEDIVPYS 400 (727)
T ss_pred HHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCccccceecceeccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCcccCcCCCCCceEeeecCCCCcCcceEEEEeecCceEEEEEEeccCcc---------------------c
Q 003290 399 ISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGTFTVDVQYADVSEF---------------------E 457 (833)
Q Consensus 399 i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~~~i~~~~~~~~~l---------------------~ 457 (833)
|.+.|..... |......+||+|.++|.+|.+||++.++|++.++|++.+.| +
T Consensus 401 Is~~w~~~~e-------d~~~~~evF~~~~~~p~~K~lT~~Rk~~F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~ge 473 (727)
T KOG0103|consen 401 ISLRWVKQGE-------DGGSVTEVFPKGHPSPSVKLLTFNRKGPFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDGE 473 (727)
T ss_pred EEEEeccccc-------cCCCceeeecCCCCCCCceEEEEEecCceEEEEEeccccccCCCCCceeeEEecccccCcccc
Confidence 9999987621 22355889999999999999999999999999999875543 4
Q ss_pred cceEEEEEEEcCCceEEEEeceeeeeeeeccccCCCchhhhhcccCCCCCCCCCCCCCCccccccccccCCCCCCCCCCC
Q 003290 458 RAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQGTTDA 537 (833)
Q Consensus 458 ~~~i~v~~~~d~~Gi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (833)
..+|+|++++|.+||++|.+++++++.++++ ++.. .|+.+.++..
T Consensus 474 ~skVKvkvr~n~~Gi~~i~sA~~~e~~~vee-v~~~------~~e~~~~~~~---------------------------- 518 (727)
T KOG0103|consen 474 FSKVKVKVRLNEHGIDTIESATLIEDIEVEE-VPEE------PMEYDDAAKM---------------------------- 518 (727)
T ss_pred ccceeEEEEEcCccceeeecceeecccchhc-cccc------hhhhhcchhh----------------------------
Confidence 6799999999999999999999998877664 3321 1111110000
Q ss_pred CCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Q 003290 538 PGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYVYD 617 (833)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~ 617 (833)
. +.....+.|+++++.+|++....+++|+..+++..++++.+|..+|+...++.+++|+||+|||+
T Consensus 519 --~------------~~~~~~~~k~kvk~~~L~~~~~~~~~l~~~~l~~~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~ 584 (727)
T KOG0103|consen 519 --L------------ERIAPAENKKKVKKVDLPIEAYTKGALITDELELYIEKENKMILQDKLEKETVDAKNALEEYVYD 584 (727)
T ss_pred --h------------hhhccccccceeeeccccceeeeccccCHHHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHHHHH
Confidence 0 00000112667888999999888778999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhccchHHHHHHhhhcchHHHHHHHHHHH
Q 003290 618 MRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEFTDRSSVIDQLAYCIN 697 (833)
Q Consensus 618 ~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~ 697 (833)
||++|.+.|..|+++++|++|...|+++++|||++|++.++..|..||.+|+.+++ ..|+.+++.||++++.+.+.|+
T Consensus 585 ~R~kl~~~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~kl~elk~~g~--~~r~~e~~~r~k~~d~~~~~i~ 662 (727)
T KOG0103|consen 585 MRDKLSDKYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVAKLEELKKLGD--KKRFDENEERPKAFDELGKKIQ 662 (727)
T ss_pred HHHHhhhhhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHhhhh--hhhhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhHhhhcCCC
Q 003290 698 SYREAALSSDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCRPIMTKPK 774 (833)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~k~k 774 (833)
.++..+.+ ++.++...|++.++|+++++.+|.+++++.+| +..++++.+.++|+..|.+++++||
T Consensus 663 ~~r~~~~~-----------~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~~p-v~~~e~~~~~~~l~~~~~~i~~~~k 727 (727)
T KOG0103|consen 663 EIRKAIES-----------EMEKVLLEIEEAEKWLERKSNKQNKLSKTADP-VPSSEIESEAKELNNTCSDIISKPK 727 (727)
T ss_pred HHHHHHHH-----------HHHHHHHHHHHHHHHHhhhhhhhhcccCCCCC-CchHHHHHhhhhhccccccccccCC
Confidence 99988744 89999999999999999999999999999999 9999999999999999999999876
No 2
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-121 Score=941.94 Aligned_cols=581 Identities=31% Similarity=0.569 Sum_probs=551.8
Q ss_pred eEEEEEcCccceEEEEEECCceEEEcCCCCCccceEEEEEcCCceEecHhhhhhhccCCCchHHHHHHhhCCCCCCHHHH
Q 003290 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPELQ 81 (833)
Q Consensus 2 ~viGID~GTt~s~va~~~~~~~~ii~n~~~~r~tPs~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~~~ 81 (833)
+|||||||||||||+++++|+++||.|++|+|.|||+|+|.+++|++|++|++++..||.||+++.|||||+.++|+.+|
T Consensus 37 tvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~vq 116 (663)
T KOG0100|consen 37 TVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKSVQ 116 (663)
T ss_pred eEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCChhhh
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCceeeeCCCCceEEEEEEc-CceeeeCHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHHHHHHH
Q 003290 82 RDLKSLPFAVTEGPDGYPLIHARYL-GETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (833)
Q Consensus 82 ~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~~~eel~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~~Aa 160 (833)
.++++|||+++.. +|.++++|... |+.+.|+|+++++|+|.++++.|+.|+|.+++++|+|||+||++.||+++++|.
T Consensus 117 ~Dik~~Pfkvv~k-~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKDAG 195 (663)
T KOG0100|consen 117 KDIKFLPFKVVNK-DGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAG 195 (663)
T ss_pred hhhhcCceEEEcC-CCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhcccc
Confidence 9999999999876 78889998876 668999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHHH
Q 003290 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (833)
Q Consensus 161 ~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~ 240 (833)
.+|||+++|+||||||||++||+.+.+ ..+++||||+||||||||++.+.+|.|+|+++.||.+|||.|||+++++
T Consensus 196 tIAgLnV~RIiNePTaAAIAYGLDKk~----gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~ 271 (663)
T KOG0100|consen 196 TIAGLNVVRIINEPTAAAIAYGLDKKD----GEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVME 271 (663)
T ss_pred eeccceEEEeecCccHHHHHhcccccC----CcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHH
Confidence 999999999999999999999998875 4789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCceeEEEeccccCccceEEecHHHHHHHHHHHHHHHHHHHHH
Q 003290 241 HFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEK 320 (833)
Q Consensus 241 ~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~ 320 (833)
||.+.++++++.|++.+.|++.+|+++||++|+.||+..++.+.|++++++.||+-++||..||++.-++|.....|++.
T Consensus 272 ~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~k 351 (663)
T KOG0100|consen 272 YFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQK 351 (663)
T ss_pred HHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHh-CCCCCCCCCchhHHHhHHHHhchhhcCCCcccceEEEeecccce
Q 003290 321 ALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFF-GKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSI 399 (833)
Q Consensus 321 ~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~f-g~~~~~~~npdeava~Gaa~~aa~ls~~~~~~~~~~~d~~~~~i 399 (833)
+|+++++...+|+.|+||||++|||.||++|+++| |++.++.+|||||||+|||.+|..||+.....++++.|++|+++
T Consensus 352 vl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~t~divLLDv~pLtl 431 (663)
T KOG0100|consen 352 VLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEEDTGDIVLLDVNPLTL 431 (663)
T ss_pred HHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccCcCcEEEEeeccccc
Confidence 99999999999999999999999999999999999 79999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCcccCcCCCCCceEeeecCCCCcCcceEEEEeecCc----eEEEEEEeccCc------c-------------
Q 003290 400 SLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGT----FTVDVQYADVSE------F------------- 456 (833)
Q Consensus 400 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~~~~~~~------l------------- 456 (833)
||++.+| .|..|||||+.||++|+..|++..| ++|.+|+|+... |
T Consensus 432 GIETvGG------------VMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPR 499 (663)
T KOG0100|consen 432 GIETVGG------------VMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPR 499 (663)
T ss_pred eeeeecc------------eeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCC
Confidence 9999988 8999999999999999999998765 557788765422 1
Q ss_pred ccceEEEEEEEcCCceEEEEeceeeeeeeeccccCCCchhhhhcccCCCCCCCCCCCCCCccccccccccCCCCCCCCCC
Q 003290 457 ERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQGTTD 536 (833)
Q Consensus 457 ~~~~i~v~~~~d~~Gi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (833)
+.|.|.|+|.+|.||||+|++. |
T Consensus 500 GvpqIEVtFevDangiL~VsAe-------------------------D-------------------------------- 522 (663)
T KOG0100|consen 500 GVPQIEVTFEVDANGILQVSAE-------------------------D-------------------------------- 522 (663)
T ss_pred CCccEEEEEEEccCceEEEEee-------------------------c--------------------------------
Confidence 6899999999999999999883 1
Q ss_pred CCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 003290 537 APGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYVY 616 (833)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy 616 (833)
|.++++..|+|++.. +.|++++|++|+..+++|+.+|+..+++.++||.||+|.|
T Consensus 523 ------------------------Kgtg~~~kitItNd~-~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~Yay 577 (663)
T KOG0100|consen 523 ------------------------KGTGKKEKITITNDK-GRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAY 577 (663)
T ss_pred ------------------------cCCCCcceEEEecCC-CCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHH
Confidence 334455678888776 6899999999999999999999999999999999999999
Q ss_pred HHHHHHhh--hhhccCCHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhccchHHHHHHhh
Q 003290 617 DMRNKLCD--KYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEF 682 (833)
Q Consensus 617 ~~r~~L~~--~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~ 682 (833)
++++.+.+ .+...+++++++.+...+++..+||.++ .+|.+++|++|+++|..++.||..+++..
T Consensus 578 slKnqi~dkekLg~Kl~~edKe~~e~av~e~~eWL~~n-~~a~~Ee~~ek~kele~vv~PiisklY~~ 644 (663)
T KOG0100|consen 578 SLKNQIGDKEKLGGKLSDEDKETIEDAVEEALEWLESN-QDASKEEFKEKKKELEAVVQPIISKLYGG 644 (663)
T ss_pred HhhhccCchhHhcccCChhHHHHHHHHHHHHHHHHhhc-ccccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999963 5899999999999999999999999998 99999999999999999999999887653
No 3
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-112 Score=928.26 Aligned_cols=758 Identities=28% Similarity=0.451 Sum_probs=634.9
Q ss_pred eEEEEEcCccceEEEEEECC-ceEEEcCCCCCccceEEEEEcCCceEecHhhhhhhccCCCchHHHHHHhhCCCCCCHHH
Q 003290 2 SVVGFDLGNESCIVAVARQR-GIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (833)
Q Consensus 2 ~viGID~GTt~s~va~~~~~-~~~ii~n~~~~r~tPs~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~~ 80 (833)
+|++|||||.|++||++++| +++|++|..++|++|++|+|.+++|+||.+|.+++.++|++++.+++.|||+...++.+
T Consensus 23 AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~~v 102 (902)
T KOG0104|consen 23 AVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDPTV 102 (902)
T ss_pred hheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCcHH
Confidence 79999999999999999998 88999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCc-eeeeCC-CCceEEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHHHHH
Q 003290 81 QRDLKSLPF-AVTEGP-DGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVID 158 (833)
Q Consensus 81 ~~~~~~~~~-~~~~~~-~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~~ 158 (833)
..+.+++|| .++.++ ++++.|.+. + ...|++|+|+||+|.+.+..|+.+...+|.++|||||.||++.||+++++
T Consensus 103 ~ly~~~~p~~e~v~d~~rstV~F~i~--d-~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~ 179 (902)
T KOG0104|consen 103 DLYQKRFPFFELVEDPQRSTVVFKIS--D-QEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQ 179 (902)
T ss_pred HHHHhcCCceeecccCccceEEEEeC--C-ccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHH
Confidence 988887776 455554 677777654 3 46799999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeC----------CeEEEEEeeCCCC
Q 003290 159 AATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKK----------GQLKILGHSFDRS 228 (833)
Q Consensus 159 Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~----------~~~~vl~~~~d~~ 228 (833)
||++||++++.||||.+||||.||++++..+...+++++|||||+|+|.+++|.|.- ..+++++++||.+
T Consensus 180 Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~t 259 (902)
T KOG0104|consen 180 AAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRT 259 (902)
T ss_pred HHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCc
Confidence 999999999999999999999999998755556799999999999999999999861 4799999999999
Q ss_pred cccHHHHHHHHHHHHHHHHhhhc--cCccCCHHHHHHHHHHHHHHhhhcCCCCceeEEEeccccCccceEEecHHHHHHH
Q 003290 229 VGGRDFDEVLFQHFAAKFKEEYK--IDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQI 306 (833)
Q Consensus 229 lGG~~~D~~l~~~l~~~~~~k~~--~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~ie~l~~~~d~~~~itr~efe~l 306 (833)
|||..|..+|++||...|.++++ .+++.|||+|+||.++|+++|.+||+|.++.++|++|++|+||+.+|||++||++
T Consensus 260 LGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEel 339 (902)
T KOG0104|consen 260 LGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEEL 339 (902)
T ss_pred cchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHHH
Confidence 99999999999999999999886 4789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhC-CCCCCCCCchhHHHhHHHHhchhhcCCCc
Q 003290 307 SAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFG-KEPRRTMNASECVARGCALQCAILSPTFK 385 (833)
Q Consensus 307 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg-~~~~~~~npdeava~Gaa~~aa~ls~~~~ 385 (833)
|.+++.|+..||+++|..++++.++|+.|+|+||+||+|.||+.|.++.| .++.+++|+|||+++||+|+||.||..|+
T Consensus 340 c~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSksFK 419 (902)
T KOG0104|consen 340 CADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSKSFK 419 (902)
T ss_pred HHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999998 68999999999999999999999999999
Q ss_pred ccceEEEeecccceEEEEcCCCCcccCcCCCCCceEeeecCCCCcCcceEEEEee-cCceEEEEEEeccC-cc-------
Q 003290 386 VREFQVNESFPFSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYR-SGTFTVDVQYADVS-EF------- 456 (833)
Q Consensus 386 ~~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~-~~~~~i~~~~~~~~-~l------- 456 (833)
+++|.+.|.++|+|.+++.+. +.+ ...+.....+|++|.+||.+++++|+. +.||.+.+.|+.-. .+
T Consensus 420 vKpf~V~D~~~yp~~v~f~~~-~~i---~~~k~~~~~lf~~~~~yPnk~vi~~~~ysddf~~~~n~~~~~~nl~~velsg 495 (902)
T KOG0104|consen 420 VKPFNVVDASVYPYLVEFETE-PGI---HALKSVKRDLFARMSPYPNKKVITFTSYSDDFPFNINYGDLGQNLTTVELSG 495 (902)
T ss_pred ccceeeeecccccEEEEeccC-Ccc---cccchhHHHHHhcCCcCCCcceeeccccCCccccccchhhhccCccEEEEec
Confidence 999999999999999998764 111 112235678999999999999898876 45788888876542 21
Q ss_pred -------------ccceEEEEEEEcCCceEEEEeceeeeeeeeccccC-------CCchh-hhhcccCCCCCCCCCCCCC
Q 003290 457 -------------ERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVT-------KEPEK-EAAKMETDEVPSDAAPPSS 515 (833)
Q Consensus 457 -------------~~~~i~v~~~~d~~Gi~~v~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~d~~~~~~~~~~~ 515 (833)
....|+++|.+|.+|++.|+.++++++...+.... +.+.. +-+...+|..+.+..
T Consensus 496 V~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~~~e~a---- 571 (902)
T KOG0104|consen 496 VKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSVQEEDA---- 571 (902)
T ss_pred chHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhhhccccccccccccccccchhhh----
Confidence 36789999999999999999999887642221110 00000 000000010000000
Q ss_pred CccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCC-Cccc----ceeEeeeEeeccCCCCCHHHHHHHHHH
Q 003290 516 SETDVNMQDAKGTADAQGTTDAPGAENGVPESGDKPTQMETDKT-PKKK----VKKTNIPVSELVYGGMLPVDVQKAVEK 590 (833)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~----~~~~~l~i~~~~~~~ls~~ei~~~~~~ 590 (833)
+.......+.++...+ ....++.+.. ++ +.+.+..+.. ++.+ +....+..+...++.|+...++..+.+
T Consensus 572 -e~k~~ep~e~se~~ee-~~~d~s~e~k---~e-~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~k 645 (902)
T KOG0104|consen 572 -EEKGLEPSERSELEEE-AEEDASQEDK---TE-KETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAK 645 (902)
T ss_pred -hhhccCcccccccccc-cccccccccc---cc-ccchhccCcchhhcccCcceeEeeeeeecccccCCchhHHHHHHHH
Confidence 0000000000000000 0000000000 00 0000000000 1111 112222223333457999999999999
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhccCCHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 003290 591 EFEMALQDRVMEETKDRKNAVEAYVYDMRNKLC-DKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELK 669 (833)
Q Consensus 591 ~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~L~-~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~ 669 (833)
+..+.++|+.+.+|++|.|.||+|+|.+.++|+ ++|..|.+++|++.|++.|..+.+||++++.+.+++.|.+++.+|+
T Consensus 646 l~d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~a~L~ 725 (902)
T KOG0104|consen 646 LEDFVQKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKLAELK 725 (902)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 999999999999999999999999999999997 5799999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHhhhcchHHHHHHHHHHHHHHHHhhc------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 003290 670 KQGDPIEERYKEFTDRSSVIDQLAYCINSYREAALS------SDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQDALP 743 (833)
Q Consensus 670 ~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~------~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~ 743 (833)
+++..+.+|.++++.+|+.++.|...|+...+++.. +++...-++..++..|.+.+++...||+.....|.+++
T Consensus 726 ~l~~~~~~R~ee~kq~pe~l~~l~~~l~~s~~~l~~~~~~~~~~E~d~~ft~~e~~~L~k~i~~t~~W~~~~~~~~~k~~ 805 (902)
T KOG0104|consen 726 KLETSKNFREEERKQFPEELEALKNLLNRSFSFLKQARNLSTWEEKDTIFTKTEIDTLEKVIAKTTAWLNDRLDLFEKKA 805 (902)
T ss_pred HHHhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccccccchhccchhhhhHHHHHHHHHHhHHHhhhhHHHHHhhh
Confidence 999999999999999999999999999999888744 44555568899999999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHHHHHHhHhhhcCCCCC
Q 003290 744 KYAAPVLLLGDVRRKAEALDRFCRPIMTKPKPA 776 (833)
Q Consensus 744 ~~~dP~~~~~di~~k~~~l~~~~~~l~~k~kp~ 776 (833)
+++||+++++||..|++.|++++.++++|.|-+
T Consensus 806 k~edp~~k~kei~~K~k~Ldrev~~~lnK~k~~ 838 (902)
T KOG0104|consen 806 KTEDPVLKVKEIEEKAKSLDREVLYLLNKLKIR 838 (902)
T ss_pred cccCccccHHHHHHHHHhhHHHHHHHHHHhhcc
Confidence 999999999999999999999999999988774
No 4
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=1.8e-100 Score=903.20 Aligned_cols=583 Identities=32% Similarity=0.553 Sum_probs=535.8
Q ss_pred CeEEEEEcCccceEEEEEECCceEEEcCCCCCccceEEEEEcCCceEecHhhhhhhccCCCchHHHHHHhhCCCCCCHHH
Q 003290 1 MSVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (833)
Q Consensus 1 m~viGID~GTt~s~va~~~~~~~~ii~n~~~~r~tPs~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~~ 80 (833)
+++||||||||||+||++++|+++||.|..|+|.|||+|+|.+++++||..|..++.++|.++++++|||||+.++++.+
T Consensus 4 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 83 (653)
T PTZ00009 4 GPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSVV 83 (653)
T ss_pred ccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchhH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCceeeeCCCCceEEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHHHHHHH
Q 003290 81 QRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (833)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~~Aa 160 (833)
+...+++||.++..++|...+.+.+.++.+.|+|++|++++|++|++.|+.++|.++.++|||||+||++.||+++++||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa 163 (653)
T PTZ00009 84 QSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAG 163 (653)
T ss_pred hhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHHH
Confidence 99999999999988889899999888877899999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHHH
Q 003290 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (833)
Q Consensus 161 ~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~ 240 (833)
++|||++++||+||+|||++|++.+... .+.++|||||||||||+||+++.++.++|+++.|+.+|||++||.+|++
T Consensus 164 ~~AGl~v~~li~EptAAAl~y~~~~~~~---~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~ 240 (653)
T PTZ00009 164 TIAGLNVLRIINEPTAAAIAYGLDKKGD---GEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVE 240 (653)
T ss_pred HHcCCceeEEecchHHHHHHHhhhccCC---CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHH
Confidence 9999999999999999999999865321 3678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh-ccCccCCHHHHHHHHHHHHHHhhhcCCCCceeEEEeccccCccceEEecHHHHHHHHHHHHHHHHHHHH
Q 003290 241 HFAAKFKEEY-KIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLE 319 (833)
Q Consensus 241 ~l~~~~~~k~-~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~ 319 (833)
||+++|..++ +.++..+++++.||+.+||++|+.||.+.++.+.|++++++.+++++|||++||++|+|+++++..+|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~ 320 (653)
T PTZ00009 241 FCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVE 320 (653)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 9999998887 478888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhC-CCCCCCCCchhHHHhHHHHhchhhcCC--CcccceEEEeecc
Q 003290 320 KALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFG-KEPRRTMNASECVARGCALQCAILSPT--FKVREFQVNESFP 396 (833)
Q Consensus 320 ~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg-~~~~~~~npdeava~Gaa~~aa~ls~~--~~~~~~~~~d~~~ 396 (833)
++|+.++++..+|+.|+||||+||||+|+++|+++|+ ..+..++|||+|||+|||++|+++++. |+++++.+.|++|
T Consensus 321 ~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~p 400 (653)
T PTZ00009 321 KVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTP 400 (653)
T ss_pred HHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEeecc
Confidence 9999999999999999999999999999999999996 678899999999999999999999985 7889999999999
Q ss_pred cceEEEEcCCCCcccCcCCCCCceEeeecCCCCcCcceEEEEeecCc----eEEEEEEeccCc------c----------
Q 003290 397 FSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGT----FTVDVQYADVSE------F---------- 456 (833)
Q Consensus 397 ~~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~~~~~~~------l---------- 456 (833)
|+||++..++ .+.+||++|++||++++++|++..+ +.|.+++++... |
T Consensus 401 ~slgi~~~~~------------~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~ 468 (653)
T PTZ00009 401 LSLGLETAGG------------VMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPP 468 (653)
T ss_pred cccCccccCC------------ceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCC
Confidence 9999987655 6789999999999999999976543 788888876421 1
Q ss_pred ---ccceEEEEEEEcCCceEEEEeceeeeeeeeccccCCCchhhhhcccCCCCCCCCCCCCCCccccccccccCCCCCCC
Q 003290 457 ---ERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQG 533 (833)
Q Consensus 457 ---~~~~i~v~~~~d~~Gi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (833)
+.+.|+|+|.+|.+|+|+|++. +
T Consensus 469 ~~~g~~~i~v~f~id~~Gil~v~~~-------------------------~----------------------------- 494 (653)
T PTZ00009 469 APRGVPQIEVTFDIDANGILNVSAE-------------------------D----------------------------- 494 (653)
T ss_pred CCCCCceEEEEEEECCCCeEEEEEe-------------------------c-----------------------------
Confidence 3457999999999999999874 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 003290 534 TTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEA 613 (833)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs 613 (833)
+.+.+...++|.... .+|+.++++++++.+.+|..+|+.++++.+++|+||+
T Consensus 495 ---------------------------~~t~~~~~~~i~~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs 546 (653)
T PTZ00009 495 ---------------------------KSTGKSNKITITNDK-GRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLEN 546 (653)
T ss_pred ---------------------------ccCCceeeEEEeecc-ccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHH
Confidence 000112344554332 5799999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-hhhhccCCHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhccchHHHHHHh
Q 003290 614 YVYDMRNKLC-DKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKE 681 (833)
Q Consensus 614 ~iy~~r~~L~-~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e 681 (833)
|||++|++|. ++|..++++++|++|.+.|+++++|||+ +++++.++|++|+++|+++++||..|+..
T Consensus 547 ~Iy~~r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~~-~~~~~~~~~~~kl~eL~~~~~pi~~r~~~ 614 (653)
T PTZ00009 547 YCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEK-NQLAEKEEFEHKQKEVESVCNPIMTKMYQ 614 (653)
T ss_pred HHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999997 4599999999999999999999999995 58899999999999999999999998753
No 5
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=6.3e-99 Score=885.80 Aligned_cols=590 Identities=27% Similarity=0.466 Sum_probs=530.3
Q ss_pred Ce-EEEEEcCccceEEEEEECCceEEEcCCCCCccceEEEEEc-CCceEecHhhhhhhccCCCchHHHHHHhhCCCCCCH
Q 003290 1 MS-VVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFG-DKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDP 78 (833)
Q Consensus 1 m~-viGID~GTt~s~va~~~~~~~~ii~n~~~~r~tPs~V~~~-~~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~ 78 (833)
|. |||||||||||+||++.+|.+.+|.|..|.|.|||+|+|. ++++++|..|+.++.++|.++++++||+||+++.+
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~- 79 (668)
T PRK13410 1 MGRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE- 79 (668)
T ss_pred CCcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh-
Confidence 54 8999999999999999999999999999999999999997 46899999999999999999999999999999865
Q ss_pred HHHHhhccCCceeeeCCCCceEEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHHHHH
Q 003290 79 ELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVID 158 (833)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~~ 158 (833)
++...+++||.+..+++|.+.+.+...+ +.|+|++|++++|++|++.|+.++|.++.++|||||+||++.||+++++
T Consensus 80 -~~~~~~~~~~~v~~~~~g~~~i~~~~~~--~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 156 (668)
T PRK13410 80 -LDPESKRVPYTIRRNEQGNVRIKCPRLE--REFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRD 156 (668)
T ss_pred -hHHhhccCCeEEEECCCCcEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHH
Confidence 5556788999999988898888765433 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHH
Q 003290 159 AATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVL 238 (833)
Q Consensus 159 Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l 238 (833)
||++|||++++||+||+|||++|++.+. .+.++|||||||||||+||+++.++.++|+++.|+.+|||++||.+|
T Consensus 157 Aa~~AGl~v~~li~EPtAAAlayg~~~~-----~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l 231 (668)
T PRK13410 157 AGRIAGLEVERILNEPTAAALAYGLDRS-----SSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRI 231 (668)
T ss_pred HHHHcCCCeEEEecchHHHHHHhccccC-----CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHH
Confidence 9999999999999999999999997653 36799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCceeEEEeccccC----ccceEEecHHHHHHHHHHHHHHH
Q 003290 239 FQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEE----KDVRGFIKRDEFEQISAPILERV 314 (833)
Q Consensus 239 ~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~ie~l~~~----~d~~~~itr~efe~l~~~~~~~i 314 (833)
++||..+|..++++++..+++++.||+.+||++|+.||.+..+.+.+++++.+ .++...|||++||++|+++++++
T Consensus 232 ~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~ 311 (668)
T PRK13410 232 VDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRL 311 (668)
T ss_pred HHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987653 46889999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhhcCCCcccceEEEee
Q 003290 315 KRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNES 394 (833)
Q Consensus 315 ~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ls~~~~~~~~~~~d~ 394 (833)
..+|+++|+.+++.+.+|+.|+||||+||||+|+++|+++||..+..++|||+|||+|||++|+++++. ++++.+.|+
T Consensus 312 ~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~--~~~~~l~Dv 389 (668)
T PRK13410 312 LRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGE--LKDLLLLDV 389 (668)
T ss_pred HHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhccc--ccceeEEee
Confidence 999999999999999999999999999999999999999999888999999999999999999999985 678999999
Q ss_pred cccceEEEEcCCCCcccCcCCCCCceEeeecCCCCcCcceEEEEeecC----ceEEEEEEeccCc------c--------
Q 003290 395 FPFSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSG----TFTVDVQYADVSE------F-------- 456 (833)
Q Consensus 395 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~----~~~i~~~~~~~~~------l-------- 456 (833)
+||+||+++.++ .+.+|||+|++||++++.+|++.. .+.|.+++|+... |
T Consensus 390 ~p~slgie~~~g------------~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i 457 (668)
T PRK13410 390 TPLSLGLETIGG------------VMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGI 457 (668)
T ss_pred ccccccceecCC------------eeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCC
Confidence 999999999876 688999999999999999998764 3667777765321 1
Q ss_pred -----ccceEEEEEEEcCCceEEEEeceeeeeeeeccccCCCchhhhhcccCCCCCCCCCCCCCCccccccccccCCCCC
Q 003290 457 -----ERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADA 531 (833)
Q Consensus 457 -----~~~~i~v~~~~d~~Gi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (833)
+.++|+|+|.+|.||+|+|++..
T Consensus 458 ~~~~~g~~~I~v~f~id~nGiL~V~a~d---------------------------------------------------- 485 (668)
T PRK13410 458 PPAPRGVPQVQVAFDIDANGILQVSATD---------------------------------------------------- 485 (668)
T ss_pred CCCCCCCCeEEEEEEECCCcEEEEEEEE----------------------------------------------------
Confidence 45689999999999999998740
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHH
Q 003290 532 QGTTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAV 611 (833)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~L 611 (833)
+.++++..++|... .+|+.++++++++++.+|..+|+.++++.++||+|
T Consensus 486 -----------------------------~~tg~~~~~~i~~~--~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~ 534 (668)
T PRK13410 486 -----------------------------RTTGREQSVTIQGA--STLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRA 534 (668)
T ss_pred -----------------------------cCCCceeeeeeccc--ccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 00011224445432 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh---hhhccCCHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhccchHHHHHHhhhcchHH
Q 003290 612 EAYVYDMRNKLCD---KYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEFTDRSSV 688 (833)
Q Consensus 612 Es~iy~~r~~L~~---~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a 688 (833)
|+|||++|++|.+ .|..++++++|++|...|+++++|||+++.+...+.|.++++.|+.++.||..|+.| .-..-
T Consensus 535 e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~ 612 (668)
T PRK13410 535 LTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRELDLAVADLQEALYGLNREVRAEYKE--EDEGP 612 (668)
T ss_pred HHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccch
Confidence 9999999999964 588999999999999999999999999888888999999999999999999999999 22333
Q ss_pred HHHHHHHHHH
Q 003290 689 IDQLAYCINS 698 (833)
Q Consensus 689 ~~~l~~~l~~ 698 (833)
+..+++.+..
T Consensus 613 ~~~~~~~~~~ 622 (668)
T PRK13410 613 LQGIKNTFGS 622 (668)
T ss_pred hhhHHhhccc
Confidence 4444554443
No 6
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=2.9e-97 Score=874.90 Aligned_cols=567 Identities=28% Similarity=0.498 Sum_probs=519.6
Q ss_pred eEEEEEcCccceEEEEEECCceEEEcCCCCCccceEEEEEcC-CceEecHhhhhhhccCCCchHHHHHHhhCCCCCCHHH
Q 003290 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGD-KQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (833)
Q Consensus 2 ~viGID~GTt~s~va~~~~~~~~ii~n~~~~r~tPs~V~~~~-~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~~ 80 (833)
+|||||||||||+||++++|+++|+.|..|+|.|||+|+|.+ +++++|..|+.++.++|.++++++|||||+.++|+.+
T Consensus 42 ~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 121 (663)
T PTZ00400 42 DIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDAT 121 (663)
T ss_pred cEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHHH
Confidence 599999999999999999999999999999999999999974 5899999999999999999999999999999999999
Q ss_pred HHhhccCCceeeeCCCCceEEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHHHHHHH
Q 003290 81 QRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (833)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~~Aa 160 (833)
+...+++||.++..++|.+.+.+. + +.|+|++|++++|++|++.|+.++|.++.++|||||+||++.||+++++||
T Consensus 122 ~~~~~~~p~~~~~~~~~~~~~~~~--~--~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 197 (663)
T PTZ00400 122 KKEQKILPYKIVRASNGDAWIEAQ--G--KKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAG 197 (663)
T ss_pred HhhhccCCeEEEecCCCceEEEEC--C--EEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHH
Confidence 999999999999988888777653 3 689999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHHH
Q 003290 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (833)
Q Consensus 161 ~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~ 240 (833)
++|||++++||+||+|||++|++... .++++|||||||||||+||+++.++.++|+++.|+.++||++||.+|++
T Consensus 198 ~~AGl~v~~li~EptAAAlay~~~~~-----~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~ 272 (663)
T PTZ00400 198 KIAGLDVLRIINEPTAAALAFGMDKN-----DGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILN 272 (663)
T ss_pred HHcCCceEEEeCchHHHHHHhccccC-----CCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHH
Confidence 99999999999999999999997542 3689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCceeEEEeccccC----ccceEEecHHHHHHHHHHHHHHHHH
Q 003290 241 HFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEE----KDVRGFIKRDEFEQISAPILERVKR 316 (833)
Q Consensus 241 ~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~ie~l~~~----~d~~~~itr~efe~l~~~~~~~i~~ 316 (833)
||..+|..+++.++..+++++.||+.+||++|+.||.+.++.+.+++++.+ .++.+.|||++|+++|+|+++++..
T Consensus 273 ~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~ 352 (663)
T PTZ00400 273 YLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIE 352 (663)
T ss_pred HHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887654 4789999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhhcCCCcccceEEEeecc
Q 003290 317 PLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFP 396 (833)
Q Consensus 317 ~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ls~~~~~~~~~~~d~~~ 396 (833)
+|+++|+++++.+.+|+.|+||||+||||+|+++|+++||.++..++|||++||+|||++|+++++. ++++.+.|++|
T Consensus 353 ~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~--~~~~~~~dv~p 430 (663)
T PTZ00400 353 PCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGE--IKDLLLLDVTP 430 (663)
T ss_pred HHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCC--ccceEEEeccc
Confidence 9999999999999999999999999999999999999999888999999999999999999999985 67899999999
Q ss_pred cceEEEEcCCCCcccCcCCCCCceEeeecCCCCcCcceEEEEeecCc----eEEEEEEeccCc------c----------
Q 003290 397 FSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGT----FTVDVQYADVSE------F---------- 456 (833)
Q Consensus 397 ~~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~~~~~~~------l---------- 456 (833)
|+||+++.++ .+.+||++|++||++++.+|++..| +.|.+|+|+... +
T Consensus 431 ~slgi~~~~g------------~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~ 498 (663)
T PTZ00400 431 LSLGIETLGG------------VFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPP 498 (663)
T ss_pred cceEEEecCC------------eeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCC
Confidence 9999999876 6889999999999999999987654 668888875321 1
Q ss_pred ---ccceEEEEEEEcCCceEEEEeceeeeeeeeccccCCCchhhhhcccCCCCCCCCCCCCCCccccccccccCCCCCCC
Q 003290 457 ---ERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQG 533 (833)
Q Consensus 457 ---~~~~i~v~~~~d~~Gi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (833)
+.+.|+|+|.+|.||+|+|++..
T Consensus 499 ~~~g~~~i~v~f~id~~Gil~v~a~~------------------------------------------------------ 524 (663)
T PTZ00400 499 APRGVPQIEVTFDVDANGIMNISAVD------------------------------------------------------ 524 (663)
T ss_pred CCCCCceEEEEEEECCCCCEEEEEEe------------------------------------------------------
Confidence 34689999999999999998740
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 003290 534 TTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEA 613 (833)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs 613 (833)
+.++++..++|... .+|+.++++++++++.+|..+|+.++++.++||+||+
T Consensus 525 ---------------------------~~~~~~~~~~i~~~--~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs 575 (663)
T PTZ00400 525 ---------------------------KSTGKKQEITIQSS--GGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAET 575 (663)
T ss_pred ---------------------------ccCCcEEEEEeecc--ccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 01112234555533 3799999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhccchHHHHH
Q 003290 614 YVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERY 679 (833)
Q Consensus 614 ~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~ 679 (833)
|||.+|++|.+ +..++++++|++|.+.|+++++|||++ +.+.|++++++|++++.++..++
T Consensus 576 ~iy~~r~~l~e-~~~~~s~~ere~i~~~l~~~~~WL~~~----d~~~i~~k~~eL~~~l~~l~~k~ 636 (663)
T PTZ00400 576 LIYSVEKQLSD-LKDKISDADKDELKQKITKLRSTLSSE----DVDSIKDKTKQLQEASWKISQQA 636 (663)
T ss_pred HHHHHHHHHHH-HhhhCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999974 889999999999999999999999975 57899999999999999998753
No 7
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1e-96 Score=869.97 Aligned_cols=570 Identities=29% Similarity=0.500 Sum_probs=516.0
Q ss_pred Ce-EEEEEcCccceEEEEEECCceEEEcCCCCCccceEEEEEcC-CceEecHhhhhhhccCCCchHHHHHHhhCCCCCCH
Q 003290 1 MS-VVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGD-KQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDP 78 (833)
Q Consensus 1 m~-viGID~GTt~s~va~~~~~~~~ii~n~~~~r~tPs~V~~~~-~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~ 78 (833)
|+ |||||||||||+||++.+|.+.+|.|..|+|.|||+|+|.+ ++++||..|+.++.++|.++++++|||||+.+.++
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 80 (653)
T PRK13411 1 MGKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDT 80 (653)
T ss_pred CCcEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccch
Confidence 54 89999999999999999999999999999999999999975 58999999999999999999999999999999886
Q ss_pred HHHHhhccCCceeeeCCCCceEEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHHHHH
Q 003290 79 ELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVID 158 (833)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~~ 158 (833)
. .+.+++||.++...+|.+.+.+. + ..|+|++|++++|++|++.|+.++|.++.++|||||+||++.||+++++
T Consensus 81 ~--~~~~~~~~~~v~~~~~~~~~~i~--~--~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 154 (653)
T PRK13411 81 E--EERSRVPYTCVKGRDDTVNVQIR--G--RNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKD 154 (653)
T ss_pred h--HHhhcCCceEEecCCCceEEEEC--C--EEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHH
Confidence 4 45678999999888888777653 3 6799999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHH
Q 003290 159 AATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVL 238 (833)
Q Consensus 159 Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l 238 (833)
||++|||++++||+||+|||++|++.+.. .+.++|||||||||||+||+++.++.++|+++.|+.+|||++||.+|
T Consensus 155 Aa~~AGl~v~~li~EPtAAAl~y~~~~~~----~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l 230 (653)
T PRK13411 155 AGTIAGLEVLRIINEPTAAALAYGLDKQD----QEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCI 230 (653)
T ss_pred HHHHcCCCeEEEecchHHHHHHhcccccC----CCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHH
Confidence 99999999999999999999999986532 36789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCceeEEEeccccC----ccceEEecHHHHHHHHHHHHHHH
Q 003290 239 FQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEE----KDVRGFIKRDEFEQISAPILERV 314 (833)
Q Consensus 239 ~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~ie~l~~~----~d~~~~itr~efe~l~~~~~~~i 314 (833)
++||.++|..++++++..+++++.||+.+||++|+.||.+..+.+++++++.+ .++.+.|||++|+++|+|+++++
T Consensus 231 ~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~ 310 (653)
T PRK13411 231 VDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEAT 310 (653)
T ss_pred HHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887543 57899999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhC-CCCCCCCCchhHHHhHHHHhchhhcCCCcccceEEEe
Q 003290 315 KRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFG-KEPRRTMNASECVARGCALQCAILSPTFKVREFQVNE 393 (833)
Q Consensus 315 ~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg-~~~~~~~npdeava~Gaa~~aa~ls~~~~~~~~~~~d 393 (833)
..+|+++|+++++...+|+.|+||||+||||+|+++|+++|| ..+..++|||+|||+|||++|+++++. ++++.+.|
T Consensus 311 ~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~--~~~~~~~d 388 (653)
T PRK13411 311 IEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE--VKDLLLLD 388 (653)
T ss_pred HHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC--ccceeeee
Confidence 999999999999999999999999999999999999999997 678899999999999999999999986 78899999
Q ss_pred ecccceEEEEcCCCCcccCcCCCCCceEeeecCCCCcCcceEEEEeecCc----eEEEEEEeccCc------c-------
Q 003290 394 SFPFSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGT----FTVDVQYADVSE------F------- 456 (833)
Q Consensus 394 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~~~~~~~------l------- 456 (833)
++||+||+++.++ .+.+||++|++||++++.+|.+..| +.|.+++|+... +
T Consensus 389 v~p~slgi~~~~~------------~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~ 456 (653)
T PRK13411 389 VTPLSLGIETLGE------------VFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTG 456 (653)
T ss_pred cccceeeEEecCC------------ceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcC
Confidence 9999999999876 6889999999999999999987554 667777765421 1
Q ss_pred ------ccceEEEEEEEcCCceEEEEeceeeeeeeeccccCCCchhhhhcccCCCCCCCCCCCCCCccccccccccCCCC
Q 003290 457 ------ERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTAD 530 (833)
Q Consensus 457 ------~~~~i~v~~~~d~~Gi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (833)
+.+.|+|+|.+|.||+|+|++. |
T Consensus 457 i~~~~~g~~~i~v~f~id~~Gil~v~a~-------------------------d-------------------------- 485 (653)
T PRK13411 457 IPPAPRGVPQIEVSFEIDVNGILKVSAQ-------------------------D-------------------------- 485 (653)
T ss_pred CCCCCCCCccEEEEEEECCCCeEEEEEe-------------------------e--------------------------
Confidence 3468999999999999999874 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Q 003290 531 AQGTTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNA 610 (833)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~ 610 (833)
..+.++..+.|... .+|+.++++++++++.+|..+|+.++++.++||+
T Consensus 486 ------------------------------~~t~~~~~~~i~~~--~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~ 533 (653)
T PRK13411 486 ------------------------------QGTGREQSIRITNT--GGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQ 533 (653)
T ss_pred ------------------------------ccCCceEeeEEecc--ccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 00011223444432 3699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhccchHHHHHH
Q 003290 611 VEAYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYK 680 (833)
Q Consensus 611 LEs~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~ 680 (833)
||+|||.+|++|.+ +..++++++|++|...|+++++|||+ .+++.++|++++++|++.+.|+..+++
T Consensus 534 lEs~iy~~r~~l~~-~~~~~~~~er~~i~~~l~~~~~wL~~--~~~~~~~~~~~~~el~~~~~~i~~~~y 600 (653)
T PRK13411 534 ADSLLYSYESTLKE-NGELISEELKQRAEQKVEQLEAALTD--PNISLEELKQQLEEFQQALLAIGAEVY 600 (653)
T ss_pred HHHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999974 68899999999999999999999997 356899999999999999999998764
No 8
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.6e-95 Score=861.49 Aligned_cols=568 Identities=31% Similarity=0.523 Sum_probs=518.1
Q ss_pred Ce-EEEEEcCccceEEEEEECCceEEEcCCCCCccceEEEEEc-CCceEecHhhhhhhccCCCchHHHHHHhhCCCCCCH
Q 003290 1 MS-VVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFG-DKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDP 78 (833)
Q Consensus 1 m~-viGID~GTt~s~va~~~~~~~~ii~n~~~~r~tPs~V~~~-~~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~ 78 (833)
|+ |||||||||||+||++++|.++++.|..|+|.|||+|+|. +++++||..|+.++.++|.++++++|||||+. ++
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~ 78 (627)
T PRK00290 1 MGKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DE 78 (627)
T ss_pred CCcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--ch
Confidence 65 9999999999999999999999999999999999999997 67899999999999999999999999999998 67
Q ss_pred HHHHhhccCCceeeeCCCCceEEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHHHHH
Q 003290 79 ELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVID 158 (833)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~~ 158 (833)
.++.+.+++||.++..++|...+.+ .| +.++|++|++++|++|++.|+.++|.++.++|||||+||++.||+++++
T Consensus 79 ~~~~~~~~~p~~~~~~~~~~~~~~~--~~--~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~ 154 (627)
T PRK00290 79 EVQKDIKLVPYKIVKADNGDAWVEI--DG--KKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKD 154 (627)
T ss_pred HHHHHhhcCCeEEEEcCCCceEEEE--CC--EEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHH
Confidence 7888889999999998888777654 33 6799999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHH
Q 003290 159 AATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVL 238 (833)
Q Consensus 159 Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l 238 (833)
||++|||++++||+||+|||++|++.+. .+.++|||||||||||+|++++.++.++|+++.|+.++||++||.+|
T Consensus 155 Aa~~AGl~v~~li~EptAAAl~y~~~~~-----~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l 229 (627)
T PRK00290 155 AGKIAGLEVLRIINEPTAAALAYGLDKK-----GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRI 229 (627)
T ss_pred HHHHcCCceEEEecchHHHHHHhhhccC-----CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHH
Confidence 9999999999999999999999997652 36899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCceeEEEeccccC----ccceEEecHHHHHHHHHHHHHHH
Q 003290 239 FQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEE----KDVRGFIKRDEFEQISAPILERV 314 (833)
Q Consensus 239 ~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~ie~l~~~----~d~~~~itr~efe~l~~~~~~~i 314 (833)
++|+.++|..+++.++..+++++.||+.+||++|+.||.+..+.+.+++++.+ .++.+.|||++|+++|+++++++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~ 309 (627)
T PRK00290 230 IDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERT 309 (627)
T ss_pred HHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987653 67899999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhhcCCCcccceEEEee
Q 003290 315 KRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNES 394 (833)
Q Consensus 315 ~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ls~~~~~~~~~~~d~ 394 (833)
..+|+++|+.+++...+|+.|+||||+||||+|++.|+++||.++..++|||+|||+|||++|+++++. ++++.+.|+
T Consensus 310 ~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~~~--~~~~~~~d~ 387 (627)
T PRK00290 310 IEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLAGD--VKDVLLLDV 387 (627)
T ss_pred HHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhcCC--ccceeeeec
Confidence 999999999999999999999999999999999999999999889999999999999999999999984 678999999
Q ss_pred cccceEEEEcCCCCcccCcCCCCCceEeeecCCCCcCcceEEEEeecCc----eEEEEEEeccCc------c--------
Q 003290 395 FPFSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGT----FTVDVQYADVSE------F-------- 456 (833)
Q Consensus 395 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~~~~~~~------l-------- 456 (833)
+||+||+++.++ .+.+||++|++||++++++|.+..+ +.|.+++++... |
T Consensus 388 ~~~slgi~~~~~------------~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~ 455 (627)
T PRK00290 388 TPLSLGIETLGG------------VMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGI 455 (627)
T ss_pred cceEEEEEecCC------------eEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCC
Confidence 999999998765 6889999999999999999988765 568888875321 1
Q ss_pred -----ccceEEEEEEEcCCceEEEEeceeeeeeeeccccCCCchhhhhcccCCCCCCCCCCCCCCccccccccccCCCCC
Q 003290 457 -----ERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADA 531 (833)
Q Consensus 457 -----~~~~i~v~~~~d~~Gi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (833)
+.+.|+|+|.+|.||+|+|++..
T Consensus 456 ~~~~~g~~~i~v~f~~d~~gil~v~a~~---------------------------------------------------- 483 (627)
T PRK00290 456 PPAPRGVPQIEVTFDIDANGIVHVSAKD---------------------------------------------------- 483 (627)
T ss_pred CCCCCCCceEEEEEEECCCceEEEEEEE----------------------------------------------------
Confidence 34579999999999999998740
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHH
Q 003290 532 QGTTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAV 611 (833)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~L 611 (833)
..+.+...+.|... .+|+.++++++++++.+|..+|+..+++.+++|+|
T Consensus 484 -----------------------------~~~~~~~~~~i~~~--~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~l 532 (627)
T PRK00290 484 -----------------------------KGTGKEQSITITAS--SGLSDEEIERMVKDAEANAEEDKKRKELVEARNQA 532 (627)
T ss_pred -----------------------------ccCCceeEEEeccc--cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHH
Confidence 00111223444433 37999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhccchHHHHHHh
Q 003290 612 EAYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKE 681 (833)
Q Consensus 612 Es~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e 681 (833)
|+|||.+|++|+ ++..++++++|++|.+.|+++++|||++ +.+.|++++++|+++++|+..|+..
T Consensus 533 e~~i~~~~~~l~-~~~~~~~~~e~~~i~~~l~~~~~wL~~~----~~~~i~~k~~~L~~~~~~~~~~~~~ 597 (627)
T PRK00290 533 DSLIYQTEKTLK-ELGDKVPADEKEKIEAAIKELKEALKGE----DKEAIKAKTEELTQASQKLGEAMYQ 597 (627)
T ss_pred HHHHHHHHHHHH-HHhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999997 5888999999999999999999999975 6789999999999999999988654
No 9
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=5.4e-95 Score=855.73 Aligned_cols=568 Identities=28% Similarity=0.476 Sum_probs=510.6
Q ss_pred eEEEEEcCccceEEEEEECCceEEEcCCCCCccceEEEEEcC-CceEecHhhhhhhccCCCchHHHHHHhhCCCCCCHHH
Q 003290 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGD-KQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (833)
Q Consensus 2 ~viGID~GTt~s~va~~~~~~~~ii~n~~~~r~tPs~V~~~~-~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~~ 80 (833)
+|||||||||||+||++.+|.+.++.|..|+|.|||+|+|.+ +.+++|..|+.++.++|.++++++|||||+.+.+ +
T Consensus 40 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~ 117 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE--V 117 (673)
T ss_pred CEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch--h
Confidence 499999999999999999999999999999999999999974 5799999999999999999999999999999875 4
Q ss_pred HHhhccCCceeeeCCCCceEEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHHHHHHH
Q 003290 81 QRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (833)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~~Aa 160 (833)
+...+.+||.++..++|.+.+.+...+ ..|+|++|++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 118 ~~~~~~~~~~v~~~~~~~v~~~~~~~~--~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 195 (673)
T PLN03184 118 DEESKQVSYRVVRDENGNVKLDCPAIG--KQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAG 195 (673)
T ss_pred hhhhhcCCeEEEecCCCcEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 566788999999888898888776544 579999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHHH
Q 003290 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (833)
Q Consensus 161 ~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~ 240 (833)
++|||++++||+||+|||++|++.+. .+.++|||||||||||+||+++.++.++|+++.|+.+|||++||.+|++
T Consensus 196 ~~AGl~v~~li~EPtAAAlayg~~~~-----~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~ 270 (673)
T PLN03184 196 RIAGLEVLRIINEPTAASLAYGFEKK-----SNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVD 270 (673)
T ss_pred HHCCCCeEEEeCcHHHHHHHhhcccC-----CCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHH
Confidence 99999999999999999999997643 3578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCceeEEEecccc----CccceEEecHHHHHHHHHHHHHHHHH
Q 003290 241 HFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLME----EKDVRGFIKRDEFEQISAPILERVKR 316 (833)
Q Consensus 241 ~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~ie~l~~----~~d~~~~itr~efe~l~~~~~~~i~~ 316 (833)
||..+|..+++.++..+++++.||+.+||++|+.||.+..+.+.++++.. +.++.+.|||++|+++|.++++++..
T Consensus 271 ~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~ 350 (673)
T PLN03184 271 WLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKT 350 (673)
T ss_pred HHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987653 25789999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhhcCCCcccceEEEeecc
Q 003290 317 PLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFP 396 (833)
Q Consensus 317 ~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ls~~~~~~~~~~~d~~~ 396 (833)
+|+++|+.+++...+|+.|+||||+||||+|+++|+++||..+..++|||+|||+|||++|+++++. ++++.+.|++|
T Consensus 351 ~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~--~~~~~~~dv~p 428 (673)
T PLN03184 351 PVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGE--VSDIVLLDVTP 428 (673)
T ss_pred HHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHhccC--ccceEEEeccc
Confidence 9999999999999999999999999999999999999999888899999999999999999999984 67899999999
Q ss_pred cceEEEEcCCCCcccCcCCCCCceEeeecCCCCcCcceEEEEeecCc----eEEEEEEeccCc------c----------
Q 003290 397 FSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGT----FTVDVQYADVSE------F---------- 456 (833)
Q Consensus 397 ~~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~~~~~~~------l---------- 456 (833)
|+|||++.++ .+.+|||+|++||++++.+|.+..| +.|.+|+++... |
T Consensus 429 ~slgi~~~~~------------~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~ 496 (673)
T PLN03184 429 LSLGLETLGG------------VMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPP 496 (673)
T ss_pred ccceEEecCC------------eeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCC
Confidence 9999999876 6889999999999999999988654 345566654321 1
Q ss_pred ---ccceEEEEEEEcCCceEEEEeceeeeeeeeccccCCCchhhhhcccCCCCCCCCCCCCCCccccccccccCCCCCCC
Q 003290 457 ---ERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQG 533 (833)
Q Consensus 457 ---~~~~i~v~~~~d~~Gi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (833)
+.+.|+|+|.+|.+|+|+|++. +
T Consensus 497 ~~~g~~~i~v~f~id~~GiL~V~a~-------------------------~----------------------------- 522 (673)
T PLN03184 497 APRGVPQIEVKFDIDANGILSVSAT-------------------------D----------------------------- 522 (673)
T ss_pred CCCCCceEEEEEEeCCCCeEEEEEE-------------------------e-----------------------------
Confidence 3467999999999999999875 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 003290 534 TTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEA 613 (833)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs 613 (833)
+.+.++..++|... .+|+.++++++++++.+|..+|+.++++.++||+||+
T Consensus 523 ---------------------------~~t~~~~~~~i~~~--~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~ 573 (673)
T PLN03184 523 ---------------------------KGTGKKQDITITGA--STLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADS 573 (673)
T ss_pred ---------------------------cCCCeEEEEEeccc--ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHH
Confidence 01112334455432 3799999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhccchHHHHHH
Q 003290 614 YVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYK 680 (833)
Q Consensus 614 ~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~ 680 (833)
|||.+|++|. ++..++++++|++|.+.|+++++|||.+ ..+.+++++++|.+.+.++..+++
T Consensus 574 ~iy~~r~~l~-e~~~~~~~eer~~l~~~l~~~e~wL~~~----d~~~ik~~~~~l~~~l~~l~~~~~ 635 (673)
T PLN03184 574 VVYQTEKQLK-ELGDKVPADVKEKVEAKLKELKDAIASG----STQKMKDAMAALNQEVMQIGQSLY 635 (673)
T ss_pred HHHHHHHHHH-HHhhhCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999996 4888999999999999999999999976 456777888888887777776543
No 10
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=1.5e-94 Score=844.55 Aligned_cols=568 Identities=28% Similarity=0.463 Sum_probs=517.9
Q ss_pred eEEEEEcCccceEEEEEECCceEEEcCCCCCccceEEEEEcCCceEecHhhhhhhccCCCchHHHHHHhhCCCCCCHHHH
Q 003290 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPELQ 81 (833)
Q Consensus 2 ~viGID~GTt~s~va~~~~~~~~ii~n~~~~r~tPs~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~~~ 81 (833)
.+||||||||||+||++++++++++.|..|.|.|||+|+|.+++++||..|+.++..+|.++++++||+||+.+.++.++
T Consensus 28 ~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~v~ 107 (657)
T PTZ00186 28 DVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHIQ 107 (657)
T ss_pred eEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCceeeeCCCCceEEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHHHHHHHH
Q 003290 82 RDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAAT 161 (833)
Q Consensus 82 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~~Aa~ 161 (833)
...+.+||.++...+|...+.. +..+.|+|++|++++|++|+..|+.++|.++.++|||||+||++.||+++++||+
T Consensus 108 ~~~~~~p~~vv~~~~~~~~i~~---~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa~ 184 (657)
T PTZ00186 108 KDIKNVPYKIVRAGNGDAWVQD---GNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGT 184 (657)
T ss_pred HhhccCcEEEEEcCCCceEEEe---CCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHHH
Confidence 9999999999988888766553 2236899999999999999999999999999999999999999999999999999
Q ss_pred HcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHHHH
Q 003290 162 IAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQH 241 (833)
Q Consensus 162 ~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~ 241 (833)
+|||++++||+||+|||++|++... .+++||||||||||||+||+++.++.++|+++.|+.+|||++||.+|++|
T Consensus 185 ~AGl~v~rlInEPtAAAlayg~~~~-----~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~ 259 (657)
T PTZ00186 185 IAGLNVIRVVNEPTAAALAYGMDKT-----KDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDY 259 (657)
T ss_pred HcCCCeEEEEcChHHHHHHHhccCC-----CCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHH
Confidence 9999999999999999999997542 36799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCceeEEEeccccC----ccceEEecHHHHHHHHHHHHHHHHHH
Q 003290 242 FAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEE----KDVRGFIKRDEFEQISAPILERVKRP 317 (833)
Q Consensus 242 l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~ie~l~~~----~d~~~~itr~efe~l~~~~~~~i~~~ 317 (833)
|+++|..+++.++..+++++.||+.+||++|+.||.+..+.+.++++..+ .++.+.|||++|+++|+++++++..+
T Consensus 260 ~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~ 339 (657)
T PTZ00186 260 ILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAP 339 (657)
T ss_pred HHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999876543 45889999999999999999999999
Q ss_pred HHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhhcCCCcccceEEEeeccc
Q 003290 318 LEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPF 397 (833)
Q Consensus 318 i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ls~~~~~~~~~~~d~~~~ 397 (833)
++++|+++++...+|+.|+||||+||||.|+++|+++||..+...+|||+|||+|||++|+++++. ++++.+.|++||
T Consensus 340 v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~--~~~~~l~Dv~p~ 417 (657)
T PTZ00186 340 CKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGD--VKGLVLLDVTPL 417 (657)
T ss_pred HHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhccc--cCceEEEeeccc
Confidence 999999999999999999999999999999999999999888899999999999999999999985 578999999999
Q ss_pred ceEEEEcCCCCcccCcCCCCCceEeeecCCCCcCcceEEEEeecCc----eEEEEEEeccCc------c-----------
Q 003290 398 SISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGT----FTVDVQYADVSE------F----------- 456 (833)
Q Consensus 398 ~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~~~~~~~------l----------- 456 (833)
+|||++.++ .+.+||++|++||++++.+|++..| +.|.+|+|+... |
T Consensus 418 slgie~~~g------------~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~ 485 (657)
T PTZ00186 418 SLGIETLGG------------VFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPA 485 (657)
T ss_pred cccceecCC------------EEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCC
Confidence 999999876 6889999999999999999988654 678888876422 1
Q ss_pred --ccceEEEEEEEcCCceEEEEeceeeeeeeeccccCCCchhhhhcccCCCCCCCCCCCCCCccccccccccCCCCCCCC
Q 003290 457 --ERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQGT 534 (833)
Q Consensus 457 --~~~~i~v~~~~d~~Gi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (833)
+.+.|+|+|.+|.||+|+|++. |
T Consensus 486 ~~G~~~I~Vtf~iD~nGiL~V~a~-------------------------d------------------------------ 510 (657)
T PTZ00186 486 PRGVPQIEVTFDIDANGICHVTAK-------------------------D------------------------------ 510 (657)
T ss_pred CCCCCcEEEEEEEcCCCEEEEEEE-------------------------E------------------------------
Confidence 4578999999999999999884 1
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 003290 535 TDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAY 614 (833)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~ 614 (833)
+.+++...+.|.... .|+++++++|++++.++..+|+..+++.+++|.+|.+
T Consensus 511 --------------------------~~tg~~~~~~i~~~~--~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 562 (657)
T PTZ00186 511 --------------------------KATGKTQNITITANG--GLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQ 562 (657)
T ss_pred --------------------------ccCCcEEEEEeccCc--cCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 222334456665433 6999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhccchHHHH
Q 003290 615 VYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEER 678 (833)
Q Consensus 615 iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R 678 (833)
+|.++..|.+. ..+++++++.+...+...++||.. .+.+.+.|++++++|++.+.++..+
T Consensus 563 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~l~~~~~~~~~~ 622 (657)
T PTZ00186 563 LTTAERQLGEW--KYVSDAEKENVKTLVAELRKAMEN--PNVAKDDLAAATDKLQKAVMECGRT 622 (657)
T ss_pred HHHHHHHhhhh--ccCCHHHHHHHHHHHHHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999642 468999999999999999999974 3456789999999999999888763
No 11
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=6.5e-94 Score=844.87 Aligned_cols=569 Identities=28% Similarity=0.472 Sum_probs=513.8
Q ss_pred eEEEEEcCccceEEEEEECCceEEEcCCCCCccceEEEEEcC-CceEecHhhhhhhccCCCchHHHHHHhhCCCCCCHHH
Q 003290 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGD-KQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (833)
Q Consensus 2 ~viGID~GTt~s~va~~~~~~~~ii~n~~~~r~tPs~V~~~~-~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~~ 80 (833)
.|||||||||||+||++++|.+.++.|..|.|.|||+|+|.+ +++++|..|+.++..+|.++++++||+||+.+.+ +
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~--~ 80 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE--I 80 (621)
T ss_pred ceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--H
Confidence 599999999999999999999999999999999999999975 5799999999999999999999999999999865 5
Q ss_pred HHhhccCCceeeeCCCCceEEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHHHHHHH
Q 003290 81 QRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (833)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~~Aa 160 (833)
....+.+||.++..++|.+.+.+...+ ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 81 ~~~~~~~~~~v~~~~~g~i~~~~~~~~--~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa 158 (621)
T CHL00094 81 SEEAKQVSYKVKTDSNGNIKIECPALN--KDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAG 158 (621)
T ss_pred HhhhhcCCeEEEECCCCCEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 556678999999888888887765444 579999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHHH
Q 003290 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (833)
Q Consensus 161 ~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~ 240 (833)
++|||++++||+||+|||++|+.... .+.++|||||||||||+||+++.++.++|+++.|+.++||++||.+|++
T Consensus 159 ~~AGl~v~~li~EptAAAlay~~~~~-----~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~ 233 (621)
T CHL00094 159 KIAGLEVLRIINEPTAASLAYGLDKK-----NNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVN 233 (621)
T ss_pred HHcCCceEEEeccHHHHHHHhccccC-----CCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHH
Confidence 99999999999999999999987542 3578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCceeEEEeccccC----ccceEEecHHHHHHHHHHHHHHHHH
Q 003290 241 HFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEE----KDVRGFIKRDEFEQISAPILERVKR 316 (833)
Q Consensus 241 ~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~ie~l~~~----~d~~~~itr~efe~l~~~~~~~i~~ 316 (833)
|+.++|..++++++..+++++.||+.+||++|+.||.+..+.+.+++++.+ .++...|||++||++|+++++++..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~ 313 (621)
T CHL00094 234 WLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRI 313 (621)
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887542 4788899999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhhcCCCcccceEEEeecc
Q 003290 317 PLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFP 396 (833)
Q Consensus 317 ~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ls~~~~~~~~~~~d~~~ 396 (833)
+|+++|+.+++...+|+.|+||||+||||.|++.|+++||.++..++|||++||+|||++|+++++. ++++.+.|++|
T Consensus 314 ~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~--~~~~~~~d~~~ 391 (621)
T CHL00094 314 PVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGE--VKDILLLDVTP 391 (621)
T ss_pred HHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCC--ccceeeeeeec
Confidence 9999999999999999999999999999999999999999888999999999999999999999984 67899999999
Q ss_pred cceEEEEcCCCCcccCcCCCCCceEeeecCCCCcCcceEEEEeecC----ceEEEEEEeccCc------c----------
Q 003290 397 FSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSG----TFTVDVQYADVSE------F---------- 456 (833)
Q Consensus 397 ~~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~----~~~i~~~~~~~~~------l---------- 456 (833)
|+||+++.++ .+.+|||+|++||++++.+|++.. .+.|.+++|+... +
T Consensus 392 ~~lgi~~~~~------------~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~ 459 (621)
T CHL00094 392 LSLGVETLGG------------VMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPP 459 (621)
T ss_pred eeeeeeccCC------------EEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCC
Confidence 9999998765 688999999999999999998753 4667777765321 1
Q ss_pred ---ccceEEEEEEEcCCceEEEEeceeeeeeeeccccCCCchhhhhcccCCCCCCCCCCCCCCccccccccccCCCCCCC
Q 003290 457 ---ERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQG 533 (833)
Q Consensus 457 ---~~~~i~v~~~~d~~Gi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (833)
+.+.|+|+|.+|.+|+|+|++..
T Consensus 460 ~~~g~~~i~v~f~id~~Gil~v~~~~------------------------------------------------------ 485 (621)
T CHL00094 460 APRGVPQIEVTFDIDANGILSVTAKD------------------------------------------------------ 485 (621)
T ss_pred CCCCCCcEEEEEEECCCCeEEEEEee------------------------------------------------------
Confidence 34579999999999999998750
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 003290 534 TTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEA 613 (833)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs 613 (833)
+.+.+...++|... .+|+.++++++++++.+|..+|+..+++.+++|.||+
T Consensus 486 ---------------------------~~t~~~~~~~i~~~--~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~ 536 (621)
T CHL00094 486 ---------------------------KGTGKEQSITIQGA--STLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAES 536 (621)
T ss_pred ---------------------------ccCCceeeeeeccc--hhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHH
Confidence 00111223444422 3799999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhccchHHHHHHh
Q 003290 614 YVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKE 681 (833)
Q Consensus 614 ~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e 681 (833)
|||.+|++|.+ +..++++++|++|...|+++++|||++ ..+.|++++++|++.++|+..+++.
T Consensus 537 ~i~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~~wl~~~----~~~~~~~~~~~l~~~~~~~~~kl~~ 599 (621)
T CHL00094 537 LCYQAEKQLKE-LKDKISEEKKEKIENLIKKLRQALQND----NYESIKSLLEELQKALMEIGKEVYS 599 (621)
T ss_pred HHHHHHHHHHH-HhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999974 888999999999999999999999986 4479999999999999999975533
No 12
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=8.3e-94 Score=844.51 Aligned_cols=565 Identities=30% Similarity=0.507 Sum_probs=510.8
Q ss_pred eEEEEEcCccceEEEEEECCceEEEcCCCCCccceEEEEEcCC-ceEecHhhhhhhccCCCchHHHHHHhhCCCCCCHHH
Q 003290 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDK-QRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (833)
Q Consensus 2 ~viGID~GTt~s~va~~~~~~~~ii~n~~~~r~tPs~V~~~~~-~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~~ 80 (833)
.|||||||||||+||++++|.+.++.|..|+|.|||+|+|.++ .+++|..|+.++.++|.++++++|||||+.+. .+
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~~ 78 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD--EV 78 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch--HH
Confidence 3799999999999999999999999999999999999999855 89999999999999999999999999999983 46
Q ss_pred HHhhccCCceeeeCCCCceEEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHHHHHHH
Q 003290 81 QRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (833)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~~Aa 160 (833)
+...+++||. +..++|.+.+.+. + ..++|++|++++|++|+..|+.++|.++.++|||||+||++.||+++++||
T Consensus 79 ~~~~~~~~~~-v~~~~~~~~~~v~--~--~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa 153 (595)
T TIGR02350 79 TEEAKRVPYK-VVGDGGDVRVKVD--G--KEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAG 153 (595)
T ss_pred HHHhhcCCee-EEcCCCceEEEEC--C--EEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 7778899999 5566788777764 3 679999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHHH
Q 003290 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (833)
Q Consensus 161 ~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~ 240 (833)
++|||++++||+||+|||++|++.+.. .+.++|||||||||||+||+++.++.++|+++.|+.++||++||.+|++
T Consensus 154 ~~AGl~v~~li~EptAAAl~y~~~~~~----~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~ 229 (595)
T TIGR02350 154 KIAGLEVLRIINEPTAAALAYGLDKSK----KDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIID 229 (595)
T ss_pred HHcCCceEEEecchHHHHHHHhhcccC----CCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHH
Confidence 999999999999999999999976532 3689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCceeEEEeccccC----ccceEEecHHHHHHHHHHHHHHHHH
Q 003290 241 HFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEE----KDVRGFIKRDEFEQISAPILERVKR 316 (833)
Q Consensus 241 ~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~ie~l~~~----~d~~~~itr~efe~l~~~~~~~i~~ 316 (833)
||.++|..+++.++..+++++.||+.+||++|+.||.+..+.+.+++++.+ .++.+.|||++|+++|+|+++++..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~ 309 (595)
T TIGR02350 230 WLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKE 309 (595)
T ss_pred HHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887653 5788999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhhcCCCcccceEEEeecc
Q 003290 317 PLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFP 396 (833)
Q Consensus 317 ~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ls~~~~~~~~~~~d~~~ 396 (833)
+|+++|+.++++..+|+.|+||||+||||+|++.|+++||.++..++|||+|||+|||++|+++++. ++++.+.|++|
T Consensus 310 ~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~~--~~~~~~~d~~~ 387 (595)
T TIGR02350 310 PVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKGD--VKDVLLLDVTP 387 (595)
T ss_pred HHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcCC--cccceeeeccc
Confidence 9999999999999999999999999999999999999999888999999999999999999999986 67899999999
Q ss_pred cceEEEEcCCCCcccCcCCCCCceEeeecCCCCcCcceEEEEeecCc----eEEEEEEeccCc------c----------
Q 003290 397 FSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGT----FTVDVQYADVSE------F---------- 456 (833)
Q Consensus 397 ~~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~~~~~~~------l---------- 456 (833)
|+||+++.++ .+.+||++|++||++++.+|++..| +.|.+++++... |
T Consensus 388 ~~igi~~~~~------------~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~ 455 (595)
T TIGR02350 388 LSLGIETLGG------------VMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPP 455 (595)
T ss_pred ceeEEEecCC------------ceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCC
Confidence 9999998765 6789999999999999999988765 457777765321 1
Q ss_pred ---ccceEEEEEEEcCCceEEEEeceeeeeeeeccccCCCchhhhhcccCCCCCCCCCCCCCCccccccccccCCCCCCC
Q 003290 457 ---ERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQG 533 (833)
Q Consensus 457 ---~~~~i~v~~~~d~~Gi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (833)
+.++|+|+|.+|.+|+|+|++...
T Consensus 456 ~~~g~~~i~v~f~~d~~G~l~v~~~~~----------------------------------------------------- 482 (595)
T TIGR02350 456 APRGVPQIEVTFDIDANGILHVSAKDK----------------------------------------------------- 482 (595)
T ss_pred CCCCCceEEEEEEEcCCCeEEEEEEEc-----------------------------------------------------
Confidence 345799999999999999987410
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 003290 534 TTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEA 613 (833)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs 613 (833)
.+.++..+.|... .+|+.+++.++++++.+|..+|+.++++.+++|.||+
T Consensus 483 ----------------------------~~~~~~~~~i~~~--~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs 532 (595)
T TIGR02350 483 ----------------------------GTGKEQSITITAS--SGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADS 532 (595)
T ss_pred ----------------------------cCCceEEEEeccc--cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH
Confidence 0011224444433 3799999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhccchHHHHH
Q 003290 614 YVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERY 679 (833)
Q Consensus 614 ~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~ 679 (833)
|||.+|++|++ +..++++++|++|...|+++++|||++ +..+|++++++|+++++++..++
T Consensus 533 ~iy~~r~~l~~-~~~~~~~~e~~~l~~~l~~~~~wL~~~----d~~~i~~~~~~l~~~~~~~~~~~ 593 (595)
T TIGR02350 533 LAYQAEKTLKE-AGDKLPAEEKEKIEKAVAELKEALKGE----DVEEIKAKTEELQQALQKLAEAM 593 (595)
T ss_pred HHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999974 688999999999999999999999975 56799999999999999988654
No 13
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-94 Score=805.11 Aligned_cols=583 Identities=33% Similarity=0.555 Sum_probs=543.6
Q ss_pred CeEEEEEcCccceEEEEEECCceEEEcCCCCCccceEEEEEcCCceEecHhhhhhhccCCCchHHHHHHhhCCCCCCHHH
Q 003290 1 MSVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (833)
Q Consensus 1 m~viGID~GTt~s~va~~~~~~~~ii~n~~~~r~tPs~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~~ 80 (833)
|.+||||||||++||+++.++.++++.|+.|+|.|||+|+|.++++++|..|..+..+||.|+++++||++|+.++++.+
T Consensus 7 ~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d~~v 86 (620)
T KOG0101|consen 7 SVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDDPEV 86 (620)
T ss_pred cceeeEeccCccceeeeEcCCcceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCccccchhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCceeeeCCCCceEEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHHHHHHH
Q 003290 81 QRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (833)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~~Aa 160 (833)
+.++++|||.+....++.+.+.+.+.++.+.|+|+++.+|+|.+++..|+.++|..+.++|||||+||++.||+++.+|+
T Consensus 87 ~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~A~ 166 (620)
T KOG0101|consen 87 QSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKDAA 166 (620)
T ss_pred HhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHHHHH
Confidence 99999999999866677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHHH
Q 003290 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (833)
Q Consensus 161 ~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~ 240 (833)
.+|||+++++|+||+|||++|++.+. .....+|||+|+||||||+|++.+.+|.+.|+++.++.++||.+||+.|++
T Consensus 167 ~iaGl~vlrii~EPtAaalAygl~k~---~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~~ 243 (620)
T KOG0101|consen 167 LIAGLNVLRIINEPTAAALAYGLDKK---VLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLVN 243 (620)
T ss_pred HhcCCceeeeecchHHHHHHhhcccc---ccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHHH
Confidence 99999999999999999999997765 124788999999999999999999999889999999999999999999999
Q ss_pred HHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCceeEEEeccccCccceEEecHHHHHHHHHHHHHHHHHHHHH
Q 003290 241 HFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEK 320 (833)
Q Consensus 241 ~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~ 320 (833)
|++.+|+.+++.+++.|++++.||+.+||++|+.||....+.+.|++|+++.||...|+|.+||.+|.+++.++..++..
T Consensus 244 h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~v~~ 323 (620)
T KOG0101|consen 244 HFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEK 323 (620)
T ss_pred HHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHh-CCCCCCCCCchhHHHhHHHHhchhhcCC--CcccceEEEeeccc
Q 003290 321 ALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFF-GKEPRRTMNASECVARGCALQCAILSPT--FKVREFQVNESFPF 397 (833)
Q Consensus 321 ~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~f-g~~~~~~~npdeava~Gaa~~aa~ls~~--~~~~~~~~~d~~~~ 397 (833)
+|+++++...+|+.|+||||++|+|.+|..|+++| |+.+..++||||+||+|||++||.+++. ..+.++.+.|+.|+
T Consensus 324 ~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~~pl 403 (620)
T KOG0101|consen 324 ALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVAPL 403 (620)
T ss_pred HHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeecccc
Confidence 99999999999999999999999999999999999 4888999999999999999999999874 24588999999999
Q ss_pred ceEEEEcCCCCcccCcCCCCCceEeeecCCCCcCcceEEEEeecCce----EEEEEEecc-----Cc-c-----------
Q 003290 398 SISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGTF----TVDVQYADV-----SE-F----------- 456 (833)
Q Consensus 398 ~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~~----~i~~~~~~~-----~~-l----------- 456 (833)
++||+..++ .+.++|++|+++|++++.+|.+..|+ .|.+|+++. +. +
T Consensus 404 ~~gve~a~~------------~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippa 471 (620)
T KOG0101|consen 404 SLGVETAGG------------VFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPA 471 (620)
T ss_pred cccccccCC------------cceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCcc
Confidence 999999887 79999999999999999999987764 478888762 22 1
Q ss_pred --ccceEEEEEEEcCCceEEEEeceeeeeeeeccccCCCchhhhhcccCCCCCCCCCCCCCCccccccccccCCCCCCCC
Q 003290 457 --ERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQGT 534 (833)
Q Consensus 457 --~~~~i~v~~~~d~~Gi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (833)
+.+.|.++|.+|.+|+|.|++. |
T Consensus 472 prgvp~IevtfdiD~ngiL~Vta~-------------------------d------------------------------ 496 (620)
T KOG0101|consen 472 PRGVPQIEVTFDIDANGILNVTAV-------------------------D------------------------------ 496 (620)
T ss_pred ccCCcceeEEEecCCCcEEEEeec-------------------------c------------------------------
Confidence 7899999999999999999885 1
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 003290 535 TDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAY 614 (833)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~ 614 (833)
+.+++...+.|.+.. +.||.++|++|...++.+..+|...+.+..++|.||+|
T Consensus 497 --------------------------~stgK~~~i~i~n~~-grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~ 549 (620)
T KOG0101|consen 497 --------------------------KSTGKENKITITNDK-GRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESY 549 (620)
T ss_pred --------------------------ccCCccceEEEeccc-ceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHH
Confidence 223344456666555 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhccchHHHHHHhh
Q 003290 615 VYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEF 682 (833)
Q Consensus 615 iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~ 682 (833)
+|+++..+++.- +.++++++.++.++|+++..||+.+ ..+.+++|++|.++|+..|.||..+++..
T Consensus 550 ~f~~~~~~~~~~-~~i~~~~~~~~~~~~~~~i~wl~~~-~~~~~~e~e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 550 AFNMKATVEDEK-GKINEEDKQKILDKCNEVINWLDKN-QLAEKEEFEHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred HHhhhhhhhhhc-cccChhhhhhHHHHHHHHHHHhhhc-ccccccHHHHHHHHHHhhccHHHHhhhcc
Confidence 999999998544 8999999999999999999999987 66779999999999999999999987654
No 14
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=9.2e-91 Score=812.89 Aligned_cols=557 Identities=27% Similarity=0.454 Sum_probs=501.4
Q ss_pred EEEEEcCccceEEEEEECCceEEEcCCCCCccceEEEEEcCC-ceEecHhhhhhhccCCCchHHHHHHhhCCCCCCHHHH
Q 003290 3 VVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDK-QRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPELQ 81 (833)
Q Consensus 3 viGID~GTt~s~va~~~~~~~~ii~n~~~~r~tPs~V~~~~~-~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~~~ 81 (833)
+||||||||||+||++.+|.++++.|..|.|.|||+|+|.++ .++||..|+.++.++|.++++++|||||+.+.+..
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~-- 78 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIK-- 78 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchh--
Confidence 589999999999999999999999999999999999999755 78999999999999999999999999999987743
Q ss_pred HhhccCCceeeeCCCCceEEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHHHHHHHH
Q 003290 82 RDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAAT 161 (833)
Q Consensus 82 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~~Aa~ 161 (833)
. .+.+||.++..++|.+.+.+.. ..++|++|++++|++|+..|+.++|.++.++|||||+||++.||+++++||+
T Consensus 79 ~-~~~~~~~~~~~~~~~~~~~~~~----~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~ 153 (599)
T TIGR01991 79 T-FSILPYRFVDGPGEMVRLRTVQ----GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAAR 153 (599)
T ss_pred h-cccCCEEEEEcCCCceEEEeCC----CEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 2 5678999988888888887642 2699999999999999999999999999999999999999999999999999
Q ss_pred HcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHHHH
Q 003290 162 IAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQH 241 (833)
Q Consensus 162 ~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~ 241 (833)
+|||++++||+||+|||++|++.+. .+.++|||||||||||+||+++.++.++|++++|+.+|||++||.+|++|
T Consensus 154 ~AGl~v~~li~EPtAAAlay~~~~~-----~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~ 228 (599)
T TIGR01991 154 LAGLNVLRLLNEPTAAAVAYGLDKA-----SEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKW 228 (599)
T ss_pred HcCCCceEEecCHHHHHHHHhhccC-----CCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999997653 36789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCceeEEEeccccCccceEEecHHHHHHHHHHHHHHHHHHHHHH
Q 003290 242 FAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKA 321 (833)
Q Consensus 242 l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~ 321 (833)
|.++ +++++..+++++.+|+.+||++|+.||.+..+.+.++. ++.++.++|||++|+++|+|+++++..+|+++
T Consensus 229 l~~~----~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~ 302 (599)
T TIGR01991 229 ILKQ----LGISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQPLVQKTLSICRRA 302 (599)
T ss_pred HHHh----hCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHH
Confidence 9965 45666778999999999999999999999988888874 78899999999999999999999999999999
Q ss_pred HHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhhcCCCcccceEEEeecccceEE
Q 003290 322 LAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISL 401 (833)
Q Consensus 322 l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ls~~~~~~~~~~~d~~~~~i~i 401 (833)
|+++++...+|+.|+||||+||||+|+++|+++||..+..++|||+|||+|||++|+++++.++.+++.+.|++||+||+
T Consensus 303 L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~~~~~~~~~l~dv~p~slgi 382 (599)
T TIGR01991 303 LRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAGNRIGNDLLLLDVTPLSLGI 382 (599)
T ss_pred HHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhccccccCceEEEEeeeeeeEE
Confidence 99999999999999999999999999999999999888889999999999999999999999888899999999999999
Q ss_pred EEcCCCCcccCcCCCCCceEeeecCCCCcCcceEEEEeecCc----eEEEEEEeccCc------c-------------cc
Q 003290 402 SWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGT----FTVDVQYADVSE------F-------------ER 458 (833)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~~~~~~~------l-------------~~ 458 (833)
++.++ .+.+|||+|++||++++..|++..| +.|.+++|+... | +.
T Consensus 383 ~~~~g------------~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~ 450 (599)
T TIGR01991 383 ETMGG------------LVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGA 450 (599)
T ss_pred EecCC------------EEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCC
Confidence 99876 6889999999999999998887554 557777765421 1 45
Q ss_pred ceEEEEEEEcCCceEEEEeceeeeeeeeccccCCCchhhhhcccCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCC
Q 003290 459 AKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQGTTDAP 538 (833)
Q Consensus 459 ~~i~v~~~~d~~Gi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (833)
++|+|+|.+|.||+|+|++. +
T Consensus 451 ~~i~v~f~id~~gil~V~a~-------------------------~---------------------------------- 471 (599)
T TIGR01991 451 ARIRVTFQVDADGLLTVSAQ-------------------------E---------------------------------- 471 (599)
T ss_pred CcEEEEEEECCCCeEEEEEE-------------------------E----------------------------------
Confidence 68999999999999999884 0
Q ss_pred CCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Q 003290 539 GAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYVYDM 618 (833)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~ 618 (833)
+.++++..+.|... .+|+.++++++.+++.++..+|+..+++.+++|.+|+|+|.+
T Consensus 472 ----------------------~~t~~~~~~~i~~~--~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 527 (599)
T TIGR01991 472 ----------------------QSTGVEQSIQVKPS--YGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEAL 527 (599)
T ss_pred ----------------------CCCCcEEEEecccc--cCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 11111223444433 369999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccCCHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhccchHHH
Q 003290 619 RNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEE 677 (833)
Q Consensus 619 r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~ 677 (833)
+..+. ++..++++++|+++...+++.++||+++ ....+++++++|+..+.++..
T Consensus 528 ~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~l~~~----~~~~~~~~~~~l~~~~~~~~~ 581 (599)
T TIGR01991 528 QAALA-ADGDLLSEDERAAIDAAMEALQKALQGD----DADAIKAAIEALEEATDNFAA 581 (599)
T ss_pred HHHHH-HhhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHH
Confidence 98886 3556899999999999999999999975 567899999999999988875
No 15
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=1e-90 Score=825.97 Aligned_cols=575 Identities=41% Similarity=0.690 Sum_probs=519.2
Q ss_pred EEEEEcCccceEEEEEECCceEEEcCCCCCccceEEEEEcCCceEecHhhhhhhccCCCchHHHHHHhhCCCCCCHHHHH
Q 003290 3 VVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPELQR 82 (833)
Q Consensus 3 viGID~GTt~s~va~~~~~~~~ii~n~~~~r~tPs~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~~~~ 82 (833)
||||||||+||+||++.+++++++.|..|+|++||+|+|.+++++||..|..++.++|+++++++|||||+.++++.++.
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~~ 80 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQK 80 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccch
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCceeeeCCCCceEEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHHHHHHHHH
Q 003290 83 DLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATI 162 (833)
Q Consensus 83 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~~Aa~~ 162 (833)
+.+.+||.++.+++|.+.+.+.+.|....++|++|++++|++|++.++.+++..+.+||||||++|++.||++|++||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~~ 160 (602)
T PF00012_consen 81 EKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAEL 160 (602)
T ss_dssp HHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHHH
T ss_pred hhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhcccccccc
Confidence 99999999999989999999998888789999999999999999999999999999999999999999999999999999
Q ss_pred cCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHHHHH
Q 003290 163 AGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHF 242 (833)
Q Consensus 163 AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l 242 (833)
|||++++||+||+|||++|++.+.. .+.++|||||||||+|+|++++.++.++|+++.++..+||++||.+|++|+
T Consensus 161 agl~~~~li~Ep~Aaa~~y~~~~~~----~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~ 236 (602)
T PF00012_consen 161 AGLNVLRLINEPTAAALAYGLERSD----KGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYL 236 (602)
T ss_dssp TT-EEEEEEEHHHHHHHHTTTTSSS----SEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHH
T ss_pred cccccceeecccccccccccccccc----cccceeccccccceEeeeehhcccccccccccccccccccceecceeeccc
Confidence 9999999999999999999887653 478999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCC--CCceeEEEecccc-CccceEEecHHHHHHHHHHHHHHHHHHHH
Q 003290 243 AAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSA--NPEAPLNIECLME-EKDVRGFIKRDEFEQISAPILERVKRPLE 319 (833)
Q Consensus 243 ~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~--~~~~~~~ie~l~~-~~d~~~~itr~efe~l~~~~~~~i~~~i~ 319 (833)
.++|..++++++..+++++.||+.+|+++|+.||. +.+..+.++++++ |.++.+.|||++|+++|.|+++++..+|+
T Consensus 237 ~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~ 316 (602)
T PF00012_consen 237 LEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIE 316 (602)
T ss_dssp HHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceecccccccccccccccc
Confidence 99999999999999999999999999999999999 6777888888888 88999999999999999999999999999
Q ss_pred HHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhhcCCCcccceEEEeecccce
Q 003290 320 KALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSI 399 (833)
Q Consensus 320 ~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ls~~~~~~~~~~~d~~~~~i 399 (833)
++|+.++++..+|++|+||||+||+|+|++.|++.||..+..++||++|||+|||++|+++++.++++++.+.|++|++|
T Consensus 317 ~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~~~~~~~d~~~~~~ 396 (602)
T PF00012_consen 317 KALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGSFRVKDIKIIDVTPFSI 396 (602)
T ss_dssp HHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTSCSSTSSCESEBESSEE
T ss_pred cccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhccccccccccccccccccc
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCcccCcCCCCCceEeeecCCCCcCcceEEEEeecC----ceEEEEEEeccCcc-------------------
Q 003290 400 SLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSG----TFTVDVQYADVSEF------------------- 456 (833)
Q Consensus 400 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~----~~~i~~~~~~~~~l------------------- 456 (833)
||.+.++ .+..++++|+++|+.++..|.+.. +|.|.++|++....
T Consensus 397 ~i~~~~~------------~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~ 464 (602)
T PF00012_consen 397 GIEVSNG------------KFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPK 464 (602)
T ss_dssp EEEETTT------------EEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSST
T ss_pred ccccccc------------ccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccc
Confidence 9999876 688999999999999887776543 48899999875431
Q ss_pred ccceEEEEEEEcCCceEEEEeceeeeeeeeccccCCCchhhhhcccCCCCCCCCCCCCCCccccccccccCCCCCCCCCC
Q 003290 457 ERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQGTTD 536 (833)
Q Consensus 457 ~~~~i~v~~~~d~~Gi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (833)
+.++|+|+|.+|.+|+|+|+.+.+..
T Consensus 465 g~~~i~v~f~ld~~Gil~V~~~~~~~------------------------------------------------------ 490 (602)
T PF00012_consen 465 GKPKIKVTFELDENGILSVEAAEVET------------------------------------------------------ 490 (602)
T ss_dssp TSSEEEEEEEEETTSEEEEEEEETTT------------------------------------------------------
T ss_pred cccceeeEEeeeeeeehhhhhccccc------------------------------------------------------
Confidence 45789999999999999999873211
Q ss_pred CCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 003290 537 APGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYVY 616 (833)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy 616 (833)
.....+.+.... .+++++++.+.+++.++..+|+.++++.+++|.||+|+|
T Consensus 491 ---------------------------~~~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~ 541 (602)
T PF00012_consen 491 ---------------------------GKEEEVTVKKKE--TLSKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIY 541 (602)
T ss_dssp ---------------------------TEEEEEEEESSS--SSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------cccccccccccc--ccccccccccccccchhhhhhhhhhhccccHHHHHHHHH
Confidence 011223343333 489999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhccchHHHHHH
Q 003290 617 DMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYK 680 (833)
Q Consensus 617 ~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~ 680 (833)
++|+.|++. ..+++++++ .++|++..+||++++.+++.++|++|+++|+++.+||..|++
T Consensus 542 ~~r~~l~~~-~~~~~~~~~---~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r~~ 601 (602)
T PF00012_consen 542 ELRDKLEED-KDFVSEEEK---KKKLKETSDWLEDNGEDADKEEYKEKLEELKKVIEPIKKRYM 601 (602)
T ss_dssp HHHHHHTCC-GGGSTHHHH---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhh-hccCCHHHH---HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999865 677887777 899999999999998889999999999999999999999985
No 16
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=3e-89 Score=801.53 Aligned_cols=557 Identities=25% Similarity=0.435 Sum_probs=497.3
Q ss_pred eEEEEEcCccceEEEEEECCceEEEcCCCCCccceEEEEEcCCceEecHhhhhhhccCCCchHHHHHHhhCCCCCCHHHH
Q 003290 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPELQ 81 (833)
Q Consensus 2 ~viGID~GTt~s~va~~~~~~~~ii~n~~~~r~tPs~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~~~ 81 (833)
.+||||||||||+||++.+|.++++.|..|+|.+||+|+|.+++++||..|+.++.++|.++++++|||||+.+.+ ++
T Consensus 20 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~~ 97 (616)
T PRK05183 20 LAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLAD--IQ 97 (616)
T ss_pred eEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh--hh
Confidence 4799999999999999999999999999999999999999988899999999999999999999999999999876 34
Q ss_pred HhhccCCceeeeCCCCceEEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHHHHHHHH
Q 003290 82 RDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAAT 161 (833)
Q Consensus 82 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~~Aa~ 161 (833)
.....+||.+...++|.+.+.+.. ..++|++|++++|++|++.|+.++|.++.++|||||+||++.||+++++||+
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~~~~~----~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~ 173 (616)
T PRK05183 98 QRYPHLPYQFVASENGMPLIRTAQ----GLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAAR 173 (616)
T ss_pred hhhhcCCeEEEecCCCceEEEecC----CeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 456778999988778888877642 3689999999999999999999999999999999999999999999999999
Q ss_pred HcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHHHH
Q 003290 162 IAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQH 241 (833)
Q Consensus 162 ~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~ 241 (833)
+|||++++||+||+|||++|++.+. .+.++||||+||||||+||+++.++.++|+++.|+.+|||++||.+|++|
T Consensus 174 ~AGl~v~~li~EPtAAAlay~~~~~-----~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~ 248 (616)
T PRK05183 174 LAGLNVLRLLNEPTAAAIAYGLDSG-----QEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADW 248 (616)
T ss_pred HcCCCeEEEecchHHHHHHhhcccC-----CCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 9999999999999999999997542 36789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCceeEEEeccccCccceEEecHHHHHHHHHHHHHHHHHHHHHH
Q 003290 242 FAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKA 321 (833)
Q Consensus 242 l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~ 321 (833)
+.++| +.+...+++++.+|+.+|+++|+.||.+..+.+.+.. +...|||++|+++|+|+++++..+|+++
T Consensus 249 ~~~~~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~------~~~~itr~efe~l~~~l~~~~~~~i~~~ 318 (616)
T PRK05183 249 ILEQA----GLSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVAL------WQGEITREQFNALIAPLVKRTLLACRRA 318 (616)
T ss_pred HHHHc----CCCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEec------CCCeEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99875 4455578999999999999999999999988888753 2335999999999999999999999999
Q ss_pred HHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhhcCCCcccceEEEeecccceEE
Q 003290 322 LAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISL 401 (833)
Q Consensus 322 l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ls~~~~~~~~~~~d~~~~~i~i 401 (833)
|+++++...+|+.|+||||+||||+|++.|+++||..+..++|||+|||+|||++|+++++.+.++++.+.|++||+|||
T Consensus 319 L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~~~l~dv~p~slgi 398 (616)
T PRK05183 319 LRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKPDSDMLLLDVIPLSLGL 398 (616)
T ss_pred HHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccccccCceEEEeeccccccc
Confidence 99999999999999999999999999999999999888889999999999999999999998888899999999999999
Q ss_pred EEcCCCCcccCcCCCCCceEeeecCCCCcCcceEEEEeecCc----eEEEEEEeccCc------c-------------cc
Q 003290 402 SWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGT----FTVDVQYADVSE------F-------------ER 458 (833)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~~~~~~~------l-------------~~ 458 (833)
++.++ .+.+|||+|++||++++..|++..| +.|.+++|+... | +.
T Consensus 399 ~~~~g------------~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~ 466 (616)
T PRK05183 399 ETMGG------------LVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGA 466 (616)
T ss_pred eecCC------------eEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCC
Confidence 98766 6889999999999999999887554 557777765421 1 45
Q ss_pred ceEEEEEEEcCCceEEEEeceeeeeeeeccccCCCchhhhhcccCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCC
Q 003290 459 AKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQGTTDAP 538 (833)
Q Consensus 459 ~~i~v~~~~d~~Gi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (833)
++|+|+|.+|.||+|+|++..
T Consensus 467 ~~i~v~f~~d~~Gil~V~a~~----------------------------------------------------------- 487 (616)
T PRK05183 467 ARIRVTFQVDADGLLSVTAME----------------------------------------------------------- 487 (616)
T ss_pred ccEEEEEEECCCCeEEEEEEE-----------------------------------------------------------
Confidence 689999999999999998740
Q ss_pred CCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Q 003290 539 GAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYVYDM 618 (833)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~ 618 (833)
+.+++...+.|... .+|+.++++++++++.++..+|+..+++.+++|++|+|+|.+
T Consensus 488 ----------------------~~~~~~~~~~i~~~--~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~~ 543 (616)
T PRK05183 488 ----------------------KSTGVEASIQVKPS--YGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEAL 543 (616)
T ss_pred ----------------------cCCCcEEEeccccc--ccCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 11122234444433 269999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccCCHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhccchHHHHH
Q 003290 619 RNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERY 679 (833)
Q Consensus 619 r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~ 679 (833)
+.+|.+ ....+++++|+++...+++.++||..+ +.+.|++++++|+..+.++..+.
T Consensus 544 ~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~~----d~~~~~~~~~~l~~~~~~~~~~~ 599 (616)
T PRK05183 544 QAALAA-DGDLLSAAERAAIDAAMAALREVAQGD----DADAIEAAIKALDKATQEFAARR 599 (616)
T ss_pred HHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHH
Confidence 999963 346889999999999999999999754 67899999999999999998633
No 17
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-86 Score=709.17 Aligned_cols=569 Identities=29% Similarity=0.500 Sum_probs=518.3
Q ss_pred eEEEEEcCccceEEEEEECCceEEEcCCCCCccceEEEEEc-CCceEecHhhhhhhccCCCchHHHHHHhhCCCCCCHHH
Q 003290 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFG-DKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (833)
Q Consensus 2 ~viGID~GTt~s~va~~~~~~~~ii~n~~~~r~tPs~V~~~-~~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~~ 80 (833)
+|+|||+|||+||+|++.++.+.++.|..|.|.|||+|+|. ++++++|..|+.++..||.|+++.-||+||++|.|+.+
T Consensus 28 ~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~ev 107 (640)
T KOG0102|consen 28 KVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDPEV 107 (640)
T ss_pred ceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccCHHH
Confidence 48999999999999999999999999999999999999995 45899999999999999999999999999999999999
Q ss_pred HHhhccCCceeeeCCCCceEEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHHHHHHH
Q 003290 81 QRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (833)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~~Aa 160 (833)
+.+++..||+++...+|...++. . ...|+|.++.+++|.+++..|+.+++.++..+|||||+||++.||+++++|.
T Consensus 108 q~~~k~vpyKiVk~~ngdaw~e~--~--G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag 183 (640)
T KOG0102|consen 108 QKDIKQVPYKIVKASNGDAWVEA--R--GKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAG 183 (640)
T ss_pred HHHHHhCCcceEEccCCcEEEEe--C--CeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhhh
Confidence 99999999999999899888776 3 4789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHHH
Q 003290 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (833)
Q Consensus 161 ~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~ 240 (833)
++|||+++++||||||||++|++.+.. ...++|||+||||||++|+.+.+|.|+|.++.||.++||.+||..+++
T Consensus 184 ~iagl~vlrvineptaaalaygld~k~-----~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~ 258 (640)
T KOG0102|consen 184 QIAGLNVLRVINEPTAAALAYGLDKKE-----DGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVR 258 (640)
T ss_pred hhccceeeccCCccchhHHhhcccccC-----CCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHH
Confidence 999999999999999999999997653 578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCceeEEEeccccC----ccceEEecHHHHHHHHHHHHHHHHH
Q 003290 241 HFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEE----KDVRGFIKRDEFEQISAPILERVKR 316 (833)
Q Consensus 241 ~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~ie~l~~~----~d~~~~itr~efe~l~~~~~~~i~~ 316 (833)
|+...|+...++++..+.++++||+..+|++|..||...++.++++.+..| ..+++++||.+||+++.+++.|.+.
T Consensus 259 ~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~ 338 (640)
T KOG0102|consen 259 FIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIE 338 (640)
T ss_pred HHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhh
Confidence 999999999999999999999999999999999999999999999988776 5789999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhhcCCCcccceEEEeecc
Q 003290 317 PLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFP 396 (833)
Q Consensus 317 ~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ls~~~~~~~~~~~d~~~ 396 (833)
+++++|+++++..+||+.|+||||.+|+|.|++.|++.||......+||||+||.|||++++.+++. |+++.+.|++|
T Consensus 339 p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~ge--VkdvlLLdVtp 416 (640)
T KOG0102|consen 339 PCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGE--VKDVLLLDVTP 416 (640)
T ss_pred HHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhcc--ccceeeeecch
Confidence 9999999999999999999999999999999999999999999999999999999999999999987 88999999999
Q ss_pred cceEEEEcCCCCcccCcCCCCCceEeeecCCCCcCcceEEEEeecCc----eEEEEEEeccCc-----c-----------
Q 003290 397 FSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGT----FTVDVQYADVSE-----F----------- 456 (833)
Q Consensus 397 ~~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~~~~~~~-----l----------- 456 (833)
+++||++.++ .+..|+++|+.||++++..|.+..| +.|.++++.... +
T Consensus 417 LsLgietlgg------------vft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp 484 (640)
T KOG0102|consen 417 LSLGIETLGG------------VFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPP 484 (640)
T ss_pred HHHHHHhhhh------------hheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCC
Confidence 9999999987 7899999999999999999998654 557777654321 1
Q ss_pred ---ccceEEEEEEEcCCceEEEEeceeeeeeeeccccCCCchhhhhcccCCCCCCCCCCCCCCccccccccccCCCCCCC
Q 003290 457 ---ERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQG 533 (833)
Q Consensus 457 ---~~~~i~v~~~~d~~Gi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (833)
+.|.|.|+|.+|.+||++|++. |
T Consensus 485 ~pRgvpqieVtfDIdanGI~~vsA~-------------------------d----------------------------- 510 (640)
T KOG0102|consen 485 APRGVPQIEVTFDIDANGIGTVSAK-------------------------D----------------------------- 510 (640)
T ss_pred CCCCCCceeEEEeecCCceeeeehh-------------------------h-----------------------------
Confidence 7899999999999999999885 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 003290 534 TTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEA 613 (833)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs 613 (833)
|.+.|..+++|.... +||.++++.|++.++.++..|+.++++.+..|..++
T Consensus 511 ---------------------------k~t~K~qsi~i~~sg--gLs~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s 561 (640)
T KOG0102|consen 511 ---------------------------KGTGKSQSITIASSG--GLSKDEIELMVGEAERLASTDKEKREAIETKNKADS 561 (640)
T ss_pred ---------------------------cccCCccceEEeecC--CCCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhh
Confidence 112233356665544 699999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhccchHHHH
Q 003290 614 YVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEER 678 (833)
Q Consensus 614 ~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R 678 (833)
++|+....+. .|.+.++.++..+|...+....+.+..- ...+.+.+..+...|+....|+..-
T Consensus 562 ~~~~te~~~~-~~~~~~~~~~~~~i~~~i~~l~~~~~~~-~~~~~~~~k~~~~~l~q~~lkl~es 624 (640)
T KOG0102|consen 562 IIYDTEKSLK-EFEEKIPAEECEKLEEKISDLRELVANK-DSGDMEEIKKAMSALQQASLKLFES 624 (640)
T ss_pred eecCchhhhh-hhhhhCcHHHHHHHHHHHHHHHHHHhhh-ccCChhhHHHHHHHHHHhhhHHHHH
Confidence 9999998886 5777888888889999999988888532 2233467777777777777666553
No 18
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=9.9e-84 Score=747.90 Aligned_cols=526 Identities=21% Similarity=0.332 Sum_probs=448.4
Q ss_pred eEEEEEcCccceEEEEEECCceEEEcCCCCCccceEEEEEcCCceEecHhhhhhhccCCCchHHHHHHhhCCCCCCH---
Q 003290 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDP--- 78 (833)
Q Consensus 2 ~viGID~GTt~s~va~~~~~~~~ii~n~~~~r~tPs~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~--- 78 (833)
.+||||||||||+||++.+|+++|+.|..|+|.|||+|+|.++++++|..| +++++||+||+.+++.
T Consensus 20 ~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~~ 89 (595)
T PRK01433 20 IAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILNT 89 (595)
T ss_pred eEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhccc
Confidence 389999999999999999999999999999999999999998889999987 7999999999998752
Q ss_pred -HHHHhhccCCceeeeCCCCceEEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHHHH
Q 003290 79 -ELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVI 157 (833)
Q Consensus 79 -~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~ 157 (833)
.+....+. .....++.+. +...+ +.|+|++|++++|++|++.|+.++|.++.++|||||+||++.||++++
T Consensus 90 ~~~~~~~k~----~~~~~~~~~~--~~~~~--~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~ 161 (595)
T PRK01433 90 PALFSLVKD----YLDVNSSELK--LNFAN--KQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVM 161 (595)
T ss_pred hhhHhhhhh----eeecCCCeeE--EEECC--EEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHH
Confidence 22211111 1112223323 33333 689999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHH
Q 003290 158 DAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEV 237 (833)
Q Consensus 158 ~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~ 237 (833)
+||++|||++++||+||+|||++|++.+. ...++|||||||||||+|++++.++.++|++++|+.+|||++||.+
T Consensus 162 ~Aa~~AGl~v~~li~EPtAAAlay~~~~~-----~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~ 236 (595)
T PRK01433 162 LAAKIAGFEVLRLIAEPTAAAYAYGLNKN-----QKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVV 236 (595)
T ss_pred HHHHHcCCCEEEEecCcHHHHHHHhcccC-----CCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHH
Confidence 99999999999999999999999997642 2568999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCceeEEEeccccCccceEEecHHHHHHHHHHHHHHHHHH
Q 003290 238 LFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRP 317 (833)
Q Consensus 238 l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~ 317 (833)
|++|++.+|. +..+.+. +..|+++|+.||.+..... ..++|||++|+++|+|+++++..+
T Consensus 237 l~~~~~~~~~------~~~~~~~----~~~~ekaK~~LS~~~~~~~----------~~~~itr~efe~l~~~l~~~~~~~ 296 (595)
T PRK01433 237 ITQYLCNKFD------LPNSIDT----LQLAKKAKETLTYKDSFNN----------DNISINKQTLEQLILPLVERTINI 296 (595)
T ss_pred HHHHHHHhcC------CCCCHHH----HHHHHHHHHhcCCCccccc----------ceEEEcHHHHHHHHHHHHHHHHHH
Confidence 9999998763 2223322 3459999999998764321 168899999999999999999999
Q ss_pred HHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhhcCCCcccceEEEeeccc
Q 003290 318 LEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPF 397 (833)
Q Consensus 318 i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ls~~~~~~~~~~~d~~~~ 397 (833)
|+++|++++ ..+|+.|+||||+||||+|+++|+++||.++..++|||++||+|||++|+++++.+ +++.+.|++||
T Consensus 297 i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~~~--~~~~l~Dv~p~ 372 (595)
T PRK01433 297 AQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPH--TNSLLIDVVPL 372 (595)
T ss_pred HHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhCCc--cceEEEEeccc
Confidence 999999998 57899999999999999999999999998888999999999999999999998753 57899999999
Q ss_pred ceEEEEcCCCCcccCcCCCCCceEeeecCCCCcCcceEEEEeecCc----eEEEEEEeccCc------c-----------
Q 003290 398 SISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGT----FTVDVQYADVSE------F----------- 456 (833)
Q Consensus 398 ~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~~~~~~~------l----------- 456 (833)
+|||++.++ .+.+||++|++||++++..|++..| +.|.+|+|+... |
T Consensus 373 slgi~~~~g------------~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~ 440 (595)
T PRK01433 373 SLGMELYGG------------IVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPM 440 (595)
T ss_pred ceEEEecCC------------EEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCC
Confidence 999999876 6889999999999999988887544 567778765421 1
Q ss_pred --ccceEEEEEEEcCCceEEEEeceeeeeeeeccccCCCchhhhhcccCCCCCCCCCCCCCCccccccccccCCCCCCCC
Q 003290 457 --ERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQGT 534 (833)
Q Consensus 457 --~~~~i~v~~~~d~~Gi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (833)
+.++|+|+|.+|.||+|+|++..
T Consensus 441 ~~g~~~i~vtf~id~~Gil~V~a~~------------------------------------------------------- 465 (595)
T PRK01433 441 KAGSIRAEVTFAIDADGILSVSAYE------------------------------------------------------- 465 (595)
T ss_pred CCCCccEEEEEEECCCCcEEEEEEE-------------------------------------------------------
Confidence 34689999999999999998851
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 003290 535 TDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAY 614 (833)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~ 614 (833)
+.++++..+.|.... .|+++++++++++++++..+|...+++.+++|.+|++
T Consensus 466 --------------------------~~t~~~~~~~i~~~~--~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 517 (595)
T PRK01433 466 --------------------------KISNTSHAIEVKPNH--GIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEAL 517 (595)
T ss_pred --------------------------cCCCcEEEEEecCCC--CCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 112233455665433 5999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhccch
Q 003290 615 VYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDP 674 (833)
Q Consensus 615 iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~p 674 (833)
+|.++..+.+ +...+++++|+.+...+++.++||..+ ....+.+++++|+..+.+
T Consensus 518 ~~~~~~~~~~-~~~~l~~~~~~~i~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~ 572 (595)
T PRK01433 518 IFNIERAIAE-LTTLLSESEISIINSLLDNIKEAVHAR----DIILINNSIKEFKSKIKK 572 (595)
T ss_pred HHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHH
Confidence 9999999974 666789999999999999999999753 456777777777777666
No 19
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-83 Score=737.59 Aligned_cols=547 Identities=32% Similarity=0.506 Sum_probs=496.8
Q ss_pred eEEEEEcCccceEEEEEECC-ceEEEcCCCCCccceEEEEEcCCc-eEecHhhhhhhccCCCchHHHHHHhhCCCCCCHH
Q 003290 2 SVVGFDLGNESCIVAVARQR-GIDVVLNDESKRETPSIVCFGDKQ-RFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPE 79 (833)
Q Consensus 2 ~viGID~GTt~s~va~~~~~-~~~ii~n~~~~r~tPs~V~~~~~~-~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~ 79 (833)
.+||||||||||+||+++++ .+.++.|..|.|.+||+|+|..++ +++|..|+.++..||.++++.+||++|+...
T Consensus 6 ~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~--- 82 (579)
T COG0443 6 KAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN--- 82 (579)
T ss_pred eEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC---
Confidence 38999999999999999988 799999999999999999998765 9999999999999999999999999998611
Q ss_pred HHHhhccCCceeeeCCCCceEEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHHHHHH
Q 003290 80 LQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDA 159 (833)
Q Consensus 80 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~~A 159 (833)
+ ..+.+...| +.++|++|++++|.+|++.|+.+++..+.++|||||+||++.||+++++|
T Consensus 83 -----------------~-~~~~~~~~~--~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A 142 (579)
T COG0443 83 -----------------G-LKISVEVDG--KKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDA 142 (579)
T ss_pred -----------------C-CcceeeeCC--eeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHH
Confidence 1 111222233 67999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHH
Q 003290 160 ATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLF 239 (833)
Q Consensus 160 a~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~ 239 (833)
+++|||++++|+|||+|||++|++.+. .+.+|||||+||||||+|++++..|.++|++++||.+|||.+||.+|+
T Consensus 143 ~~iaGl~vlrlinEPtAAAlayg~~~~-----~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~ 217 (579)
T COG0443 143 ARIAGLNVLRLINEPTAAALAYGLDKG-----KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALI 217 (579)
T ss_pred HHHcCCCeEEEecchHHHHHHhHhccC-----CCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHH
Confidence 999999999999999999999998765 378999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCceeEEEeccccCccceEEecHHHHHHHHHHHHHHHHHHHH
Q 003290 240 QHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLE 319 (833)
Q Consensus 240 ~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~ 319 (833)
+|+..+|..++++++..++++++||+..|+++|+.||.+.++.++++++..+.++...|||++||.++.+++.++..++.
T Consensus 218 ~~~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~ 297 (579)
T COG0443 218 DYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVE 297 (579)
T ss_pred HHHHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888899999999999999999999999999
Q ss_pred HHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhhcCCCcccceEEEeecccce
Q 003290 320 KALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSI 399 (833)
Q Consensus 320 ~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ls~~~~~~~~~~~d~~~~~i 399 (833)
++|.+++++..+|+.|+||||++|||.|++.|+++||.++.+++|||++||+|||++|+.+++... ++.+.|++|+++
T Consensus 298 ~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~--d~ll~Dv~plsl 375 (579)
T COG0443 298 QALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVP--DVLLLDVIPLSL 375 (579)
T ss_pred HHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCccc--CceEEeeeeecc
Confidence 999999999999999999999999999999999999999999999999999999999999998755 899999999999
Q ss_pred EEEEcCCCCcccCcCCCCCceEeeecCCCCcCcceEEEEeecCc----eEEEEEEeccCc------c-------------
Q 003290 400 SLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGT----FTVDVQYADVSE------F------------- 456 (833)
Q Consensus 400 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~~~~~~~------l------------- 456 (833)
|+++.++ .+..+|++|+.+|.++...|.+..| ..+.++.+.... +
T Consensus 376 gie~~~~------------~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~ 443 (579)
T COG0443 376 GIETLGG------------VRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPR 443 (579)
T ss_pred ccccCcc------------hhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCC
Confidence 9999876 6889999999999999999988766 335555544321 1
Q ss_pred ccceEEEEEEEcCCceEEEEeceeeeeeeeccccCCCchhhhhcccCCCCCCCCCCCCCCccccccccccCCCCCCCCCC
Q 003290 457 ERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQGTTD 536 (833)
Q Consensus 457 ~~~~i~v~~~~d~~Gi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (833)
+.+.|.++|.+|.||++.|++. |
T Consensus 444 g~~~i~v~f~iD~~gi~~v~a~-------------------------~-------------------------------- 466 (579)
T COG0443 444 GVPQIEVTFDIDANGILNVTAK-------------------------D-------------------------------- 466 (579)
T ss_pred CCCceEEEeccCCCcceEeeee-------------------------c--------------------------------
Confidence 6788999999999999998873 0
Q ss_pred CCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 003290 537 APGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYVY 616 (833)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy 616 (833)
+.+++...+.|.... + |++++++.|++.+..+.+.|+..++..+.+|.+++++|
T Consensus 467 ------------------------~~~~k~~~i~i~~~~-~-ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~ 520 (579)
T COG0443 467 ------------------------LGTGKEQSITIKASS-G-LSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIY 520 (579)
T ss_pred ------------------------ccCCceEEEEEecCC-C-CCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHH
Confidence 122344567776665 4 99999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhccchHHHHHH
Q 003290 617 DMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYK 680 (833)
Q Consensus 617 ~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~ 680 (833)
.++..|.+.. .+++++++++...+.++++||+. . ..+++.+.++|+....++..++.
T Consensus 521 ~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~--~---~~~~~~~~~~l~~~~~~~~~~~~ 577 (579)
T COG0443 521 SLEKALKEIV--KVSEEEKEKIEEAITDLEEALEG--E---KEEIKAKIEELQEVTQKLAEKKY 577 (579)
T ss_pred HHHHHHhhhc--cCCHHHHHHHHHHHHHHHHHHhc--c---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999997544 89999999999999999999997 2 88999999999999888877654
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=1.4e-55 Score=495.64 Aligned_cols=337 Identities=24% Similarity=0.341 Sum_probs=289.9
Q ss_pred EEEEEcCccceEEEEEECCceEEEcCCCCCccceEEEEEc----------------------------------------
Q 003290 3 VVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFG---------------------------------------- 42 (833)
Q Consensus 3 viGID~GTt~s~va~~~~~~~~ii~n~~~~r~tPs~V~~~---------------------------------------- 42 (833)
++|||||||||+||++.+|.++++.++.|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 5899999999999999999999999999999999999994
Q ss_pred -CCceEecHhhhhhhccCCCch--HHHHHHhhCCCCCCHHHHHhhccCCceeeeCCCCceEEEEEEcCceeeeCHHHHHH
Q 003290 43 -DKQRFIGTAGAASSTMNPKNS--ISQIKRLIGRQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLG 119 (833)
Q Consensus 43 -~~~~~~G~~A~~~~~~~p~~~--~~~~k~llG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a 119 (833)
++..+||..|+.+...+|.++ +..+|++||...-. .+ ....+++|++
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~------------------~~------------~~~~~e~l~a 131 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLK------------------PQ------------QVALFEDLVC 131 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCC------------------cc------------ceeCHHHHHH
Confidence 345689999999999999988 77999999964211 01 1234899999
Q ss_pred HHHHHHHHHHHHhcCCCcCcEEEEecCccC-----HHHHHH---HHHHHHHcCCccEEeechhHHHHHHHhhhcCCCCCC
Q 003290 120 MLLSNLKAIAESNLNAAVVDCCIGIPVYFT-----DLQRRA---VIDAATIAGLHPLRLFHETTATALAYGIYKTDLPEN 191 (833)
Q Consensus 120 ~~L~~l~~~ae~~~~~~~~~~VITVP~~f~-----~~qR~a---l~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~ 191 (833)
++|++|++.++.++|.++.++|||||+||+ +.||++ |++||++|||++++|++||+|||++|+....
T Consensus 132 ~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~----- 206 (450)
T PRK11678 132 AMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT----- 206 (450)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC-----
Confidence 999999999999999999999999999999 788876 7999999999999999999999999986432
Q ss_pred CCceEEEEEeCCceEEEEEEEEeCC-------eEEEEEeeCCCCcccHHHHHHHH-HHHHHHHHh----hhccCc-----
Q 003290 192 DQLNVAFVDIGHASLQVCIAGFKKG-------QLKILGHSFDRSVGGRDFDEVLF-QHFAAKFKE----EYKIDV----- 254 (833)
Q Consensus 192 ~~~~vlv~D~Gggt~dvsvv~~~~~-------~~~vl~~~~d~~lGG~~~D~~l~-~~l~~~~~~----k~~~~~----- 254 (833)
.++.+|||||||||+|+||+++.++ ..+|++++| .++||++||..|+ +++...|.. ++++++
T Consensus 207 ~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~ 285 (450)
T PRK11678 207 EEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPF 285 (450)
T ss_pred CCCeEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhh
Confidence 4688999999999999999999754 368999997 5899999999998 678877752 112110
Q ss_pred ------------------------------cCCHHHH------------HHHHHHHHHHhhhcCCCCceeEEEeccccCc
Q 003290 255 ------------------------------SQNARAS------------LRLRVACEKLKKVLSANPEAPLNIECLMEEK 292 (833)
Q Consensus 255 ------------------------------~~~~~~~------------~rL~~~aek~K~~LS~~~~~~~~ie~l~~~~ 292 (833)
..+|+.+ .+|+.+||++|+.||.+..+.+.++++. .
T Consensus 286 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~--~ 363 (450)
T PRK11678 286 WNAVAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS--D 363 (450)
T ss_pred hhhhhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC--C
Confidence 1234444 3788999999999999999999998764 4
Q ss_pred cceEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhH
Q 003290 293 DVRGFIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARG 372 (833)
Q Consensus 293 d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~G 372 (833)
++...|||++|+++|+++++++..+|+++|+.+++. ++.|+||||+||||.|++.|++.||.......+|.++||.|
T Consensus 364 ~~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~G 440 (450)
T PRK11678 364 GLATEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAG 440 (450)
T ss_pred CcceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHH
Confidence 578899999999999999999999999999999976 57999999999999999999999986556678999999999
Q ss_pred HHHhchhh
Q 003290 373 CALQCAIL 380 (833)
Q Consensus 373 aa~~aa~l 380 (833)
+|++|..+
T Consensus 441 la~~a~~~ 448 (450)
T PRK11678 441 LARWAQVV 448 (450)
T ss_pred HHHHHHhh
Confidence 99998753
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=2.1e-38 Score=348.71 Aligned_cols=307 Identities=21% Similarity=0.269 Sum_probs=234.9
Q ss_pred EEEEcCccceEEEEEECCceEEEcCCCCCccceEEEEEcCC--c-eEecHhhhhhhccCCCchHHHHHHhhCCCCCCHHH
Q 003290 4 VGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDK--Q-RFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (833)
Q Consensus 4 iGID~GTt~s~va~~~~~~~~ii~n~~~~r~tPs~V~~~~~--~-~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~~ 80 (833)
+||||||++++|+.. +...++. +||+|+|..+ . ..+|.+|..+..+.|.+... .
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~------~-------- 62 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVA------I-------- 62 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEE------E--------
Confidence 899999999999886 3323442 5999999853 2 36899997665555444321 0
Q ss_pred HHhhccCCceeeeCCCCceEEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHHHHHHH
Q 003290 81 QRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (833)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~~Aa 160 (833)
.|. .+|. +...++...+|+++.+.+..........+|||||++|+..||+++.+|+
T Consensus 63 ------~pi-----~~G~-------------i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~ 118 (336)
T PRK13928 63 ------RPL-----RDGV-------------IADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAA 118 (336)
T ss_pred ------ccC-----CCCe-------------EecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 111 1232 2223455666666665443222223447999999999999999999999
Q ss_pred HHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHHH
Q 003290 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (833)
Q Consensus 161 ~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~ 240 (833)
+.||++++.+++||+|||++|+.... .+..++|||+||||||++++++.. ++ ..++.++||++||..|++
T Consensus 119 ~~ag~~~~~li~ep~Aaa~~~g~~~~-----~~~~~lVvDiGggttdvsvv~~g~----~~-~~~~~~lGG~did~~i~~ 188 (336)
T PRK13928 119 EQAGAKKVYLIEEPLAAAIGAGLDIS-----QPSGNMVVDIGGGTTDIAVLSLGG----IV-TSSSIKVAGDKFDEAIIR 188 (336)
T ss_pred HHcCCCceEecccHHHHHHHcCCccc-----CCCeEEEEEeCCCeEEEEEEEeCC----EE-EeCCcCCHHHHHHHHHHH
Confidence 99999999999999999999986432 357799999999999999998753 22 345789999999999999
Q ss_pred HHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCC----ceeEEEe--ccccCccceEEecHHHHHHHHHHHHHHH
Q 003290 241 HFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANP----EAPLNIE--CLMEEKDVRGFIKRDEFEQISAPILERV 314 (833)
Q Consensus 241 ~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~----~~~~~ie--~l~~~~d~~~~itr~efe~l~~~~~~~i 314 (833)
++..+|. +.+. ...||++|+.++... ...+.+. .+..+.++.+.|+|++|++++.++++++
T Consensus 189 ~l~~~~~----~~~~---------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i 255 (336)
T PRK13928 189 YIRKKYK----LLIG---------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAI 255 (336)
T ss_pred HHHHHhc----hhcC---------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHH
Confidence 9987653 2221 257999999886431 1233332 2345567789999999999999999999
Q ss_pred HHHHHHHHHHcC--CCCCCcc-EEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhh
Q 003290 315 KRPLEKALAETG--LSVEDVH-MVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAIL 380 (833)
Q Consensus 315 ~~~i~~~l~~~~--~~~~~i~-~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~l 380 (833)
...|+++|+.++ +..+.++ .|+|+||+|++|.|+++|++.|+.++....||+++||+|||+++..+
T Consensus 256 ~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 256 VQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhch
Confidence 999999999986 4456677 79999999999999999999999998888999999999999998764
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=6.7e-38 Score=343.57 Aligned_cols=305 Identities=21% Similarity=0.285 Sum_probs=241.9
Q ss_pred EEEEEcCccceEEEEEECCceEEEcCCCCCccceEEEEEcCCc---eEecHhhhhhhccCCCchHHHHHHhhCCCCCCHH
Q 003290 3 VVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQ---RFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPE 79 (833)
Q Consensus 3 viGID~GTt~s~va~~~~~~~~ii~n~~~~r~tPs~V~~~~~~---~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~ 79 (833)
.|||||||++++| +.++.. ++.|. ||+|+|+.+. .++|.+|+.+..++|.++... +
T Consensus 6 ~~giDlGt~~~~i--~~~~~~-~~~~~------ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~------~------ 64 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNKG-IILNE------PSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV------R------ 64 (335)
T ss_pred eEEEEcccccEEE--EECCCc-EEecC------CcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE------e------
Confidence 5899999999985 444432 45564 9999998543 479999998888877665321 1
Q ss_pred HHHhhccCCceeeeCCCCceEEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHhcCCCcC--cEEEEecCccCHHHHHHHH
Q 003290 80 LQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVV--DCCIGIPVYFTDLQRRAVI 157 (833)
Q Consensus 80 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~ae~~~~~~~~--~~VITVP~~f~~~qR~al~ 157 (833)
|+ .+|. +.--++++++|++++..++..++..+. .+|||||++|+..||+++.
T Consensus 65 --------pi-----~~G~-------------I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~ 118 (335)
T PRK13929 65 --------PM-----KDGV-------------IADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAIS 118 (335)
T ss_pred --------cC-----CCCc-------------cCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHH
Confidence 11 1232 112268899999999988878776554 7999999999999999999
Q ss_pred HHHHHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHH
Q 003290 158 DAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEV 237 (833)
Q Consensus 158 ~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~ 237 (833)
+|++.||++++.|++||+|||++|++... .+..++|||+||||||++++.+.+ ++ ..++..+||++||..
T Consensus 119 ~a~~~ag~~~~~li~ep~Aaa~~~g~~~~-----~~~~~lvvDiG~gtt~v~vi~~~~----~~-~~~~~~~GG~~id~~ 188 (335)
T PRK13929 119 DAVKNCGAKNVHLIEEPVAAAIGADLPVD-----EPVANVVVDIGGGTTEVAIISFGG----VV-SCHSIRIGGDQLDED 188 (335)
T ss_pred HHHHHcCCCeeEeecCHHHHHHhcCCCcC-----CCceEEEEEeCCCeEEEEEEEeCC----EE-EecCcCCHHHHHHHH
Confidence 99999999999999999999999976422 367899999999999999998754 22 244678999999999
Q ss_pred HHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCC----ceeEEEe--ccccCccceEEecHHHHHHHHHHHH
Q 003290 238 LFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANP----EAPLNIE--CLMEEKDVRGFIKRDEFEQISAPIL 311 (833)
Q Consensus 238 l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~----~~~~~ie--~l~~~~d~~~~itr~efe~l~~~~~ 311 (833)
|+++|...+ +..+. ...||++|+.|+... ...+.+. .+..+....+.|+|++|+++|.+++
T Consensus 189 l~~~l~~~~----~~~~~---------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l 255 (335)
T PRK13929 189 IVSFVRKKY----NLLIG---------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESL 255 (335)
T ss_pred HHHHHHHHh----CcCcC---------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHHH
Confidence 999998654 33332 268999999997632 2223332 2334556788999999999999999
Q ss_pred HHHHHHHHHHHHHcCCC--CCCcc-EEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhc
Q 003290 312 ERVKRPLEKALAETGLS--VEDVH-MVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQC 377 (833)
Q Consensus 312 ~~i~~~i~~~l~~~~~~--~~~i~-~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~a 377 (833)
.++...|.++|+.++.. .+.++ .|+|+||+|++|.++++|++.||.++....||+++|++||+..-
T Consensus 256 ~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 256 LHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHH
Confidence 99999999999998643 35677 69999999999999999999999998888999999999999763
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=3.6e-35 Score=323.34 Aligned_cols=305 Identities=23% Similarity=0.332 Sum_probs=227.8
Q ss_pred EEEEEcCccceEEEEEECCceEEEcCCCCCccceEEEEEcCC-ce--EecHhhhhhhccCCCchHHHHHHhhCCCCCCHH
Q 003290 3 VVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDK-QR--FIGTAGAASSTMNPKNSISQIKRLIGRQFSDPE 79 (833)
Q Consensus 3 viGID~GTt~s~va~~~~~~~~ii~n~~~~r~tPs~V~~~~~-~~--~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~ 79 (833)
.|||||||++++++.. +.+. ++ .+||+|+|... +. ++|++|..+..+.|.++..
T Consensus 7 ~igIDlGt~~~~i~~~-~~~~-~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~-------------- 63 (334)
T PRK13927 7 DLGIDLGTANTLVYVK-GKGI-VL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVA-------------- 63 (334)
T ss_pred eeEEEcCcceEEEEEC-CCcE-EE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEE--------------
Confidence 4899999999998543 2232 33 26999999754 33 7999998776655544210
Q ss_pred HHHhhccCCceeeeCCCCceEEEEEEcCceeee-CHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHHHHH
Q 003290 80 LQRDLKSLPFAVTEGPDGYPLIHARYLGETRVF-TPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVID 158 (833)
Q Consensus 80 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~-~~eel~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~~ 158 (833)
.+|+ .+|.+ ..+ ..++++..+|.++... .. ....+|||||++|+..||++++.
T Consensus 64 ------~~pi-----~~G~i----------~d~~~~~~ll~~~~~~~~~~----~~-~~~~~vi~vP~~~~~~~r~~~~~ 117 (334)
T PRK13927 64 ------IRPM-----KDGVI----------ADFDVTEKMLKYFIKKVHKN----FR-PSPRVVICVPSGITEVERRAVRE 117 (334)
T ss_pred ------EecC-----CCCee----------cCHHHHHHHHHHHHHHHhhc----cC-CCCcEEEEeCCCCCHHHHHHHHH
Confidence 0111 12321 112 1244555554443322 21 12389999999999999999999
Q ss_pred HHHHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHH
Q 003290 159 AATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVL 238 (833)
Q Consensus 159 Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l 238 (833)
|++.||++.+.+++||+|||++|+.... .+..++|||+||||||++++++.+. . ..++.++||++||+.|
T Consensus 118 a~~~ag~~~~~li~ep~aaa~~~g~~~~-----~~~~~lvvDiGggttdvs~v~~~~~----~-~~~~~~lGG~~id~~l 187 (334)
T PRK13927 118 SALGAGAREVYLIEEPMAAAIGAGLPVT-----EPTGSMVVDIGGGTTEVAVISLGGI----V-YSKSVRVGGDKFDEAI 187 (334)
T ss_pred HHHHcCCCeeccCCChHHHHHHcCCccc-----CCCeEEEEEeCCCeEEEEEEecCCe----E-eeCCcCChHHHHHHHH
Confidence 9999999999999999999999986432 3567899999999999999987642 1 2346789999999999
Q ss_pred HHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCc----eeEEE--eccccCccceEEecHHHHHHHHHHHHH
Q 003290 239 FQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPE----APLNI--ECLMEEKDVRGFIKRDEFEQISAPILE 312 (833)
Q Consensus 239 ~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~----~~~~i--e~l~~~~d~~~~itr~efe~l~~~~~~ 312 (833)
++++.+.| +..+. ...|+++|+.++.... ..+.+ +.+..+.++.+.|+|++|++++.+.+.
T Consensus 188 ~~~l~~~~----~~~~~---------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~ 254 (334)
T PRK13927 188 INYVRRNY----NLLIG---------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPLS 254 (334)
T ss_pred HHHHHHHh----CcCcC---------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHH
Confidence 99998654 33221 2578999999875432 22333 234455667889999999999999999
Q ss_pred HHHHHHHHHHHHcCCCC-CC-cc-EEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchh
Q 003290 313 RVKRPLEKALAETGLSV-ED-VH-MVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAI 379 (833)
Q Consensus 313 ~i~~~i~~~l~~~~~~~-~~-i~-~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ 379 (833)
++...|.++|++++... .+ ++ .|+|+||+|++|.|+++|++.|+.++....||+++||+||++++..
T Consensus 255 ~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 255 AIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 99999999999986432 23 34 5999999999999999999999998988999999999999999765
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=2.8e-34 Score=315.72 Aligned_cols=305 Identities=21% Similarity=0.301 Sum_probs=224.7
Q ss_pred EEEEcCccceEEEEEECCceEEEcCCCCCccceEEEEEcCC-----c--eEecHhhhhhhccCCCchHHHHHHhhCCCCC
Q 003290 4 VGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDK-----Q--RFIGTAGAASSTMNPKNSISQIKRLIGRQFS 76 (833)
Q Consensus 4 iGID~GTt~s~va~~~~~~~~ii~n~~~~r~tPs~V~~~~~-----~--~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~ 76 (833)
|||||||+||+|++... ++ ++ .+||+|+|..+ + .++|++|+.+..+.|.+.- +++
T Consensus 5 ~giDlGt~~s~i~~~~~-~~-~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~------- 66 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGR-GI-VL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AIR------- 66 (333)
T ss_pred eEEecCcceEEEEECCC-CE-EE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EEe-------
Confidence 89999999999988533 32 33 36999999743 3 5699999766555444321 011
Q ss_pred CHHHHHhhccCCceeeeCCCCceEEEEEEcCceeee-CHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHH
Q 003290 77 DPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVF-TPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRA 155 (833)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~-~~eel~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~a 155 (833)
| ..+|.+ ..+ ..++++..+|..+... .+.....+|||||++|+..||++
T Consensus 67 -----------p-----i~~G~i----------~d~~~~~~~~~~~l~~~~~~----~~~~~~~~vitvP~~~~~~~r~~ 116 (333)
T TIGR00904 67 -----------P-----MKDGVI----------ADFEVTEKMIKYFIKQVHSR----KSFFKPRIVICVPSGITPVERRA 116 (333)
T ss_pred -----------c-----CCCCEE----------EcHHHHHHHHHHHHHHHhcc----cccCCCcEEEEeCCCCCHHHHHH
Confidence 1 112321 111 1234555555444322 12122389999999999999999
Q ss_pred HHHHHHHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHH
Q 003290 156 VIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFD 235 (833)
Q Consensus 156 l~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D 235 (833)
+.+|++.||++++.+++||+|||++|+.... .+..++|||+||||||++++++.+- . ..++.++||++||
T Consensus 117 ~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~-----~~~~~lVvDiG~gttdvs~v~~~~~----~-~~~~~~lGG~did 186 (333)
T TIGR00904 117 VKESALSAGAREVYLIEEPMAAAIGAGLPVE-----EPTGSMVVDIGGGTTEVAVISLGGI----V-VSRSIRVGGDEFD 186 (333)
T ss_pred HHHHHHHcCCCeEEEecCHHHHHHhcCCccc-----CCceEEEEEcCCCeEEEEEEEeCCE----E-ecCCccchHHHHH
Confidence 9999999999999999999999999975321 3578999999999999999987642 1 2346789999999
Q ss_pred HHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCc-----eeEEEec--cccCccceEEecHHHHHHHHH
Q 003290 236 EVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPE-----APLNIEC--LMEEKDVRGFIKRDEFEQISA 308 (833)
Q Consensus 236 ~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~-----~~~~ie~--l~~~~d~~~~itr~efe~l~~ 308 (833)
+.|++++..++ +..+. +..||++|+.|+.... ..+.+.. ...+......|++++|.+++.
T Consensus 187 ~~l~~~l~~~~----~~~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~ 253 (333)
T TIGR00904 187 EAIINYIRRTY----NLLIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQ 253 (333)
T ss_pred HHHHHHHHHHh----cccCC---------HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHHH
Confidence 99999998654 22221 2679999999975322 1222221 112334567899999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCC-CCc-c-EEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchh
Q 003290 309 PILERVKRPLEKALAETGLSV-EDV-H-MVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAI 379 (833)
Q Consensus 309 ~~~~~i~~~i~~~l~~~~~~~-~~i-~-~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ 379 (833)
+.+.++...|.++|+.++... .++ + .|+|+||+|++|.|+++|++.||.++....||+++||.||++++..
T Consensus 254 ~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 254 EPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 999999999999999976542 244 3 7999999999999999999999999999999999999999998643
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=1.6e-33 Score=310.53 Aligned_cols=308 Identities=23% Similarity=0.292 Sum_probs=230.1
Q ss_pred EEEEEcCccceEEEEEECCceEEEcCCCCCccceEEEEEcC-C--ceEecHhhhhhhccCCCchHHHHHHhhCCCCCCHH
Q 003290 3 VVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGD-K--QRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPE 79 (833)
Q Consensus 3 viGID~GTt~s~va~~~~~~~~ii~n~~~~r~tPs~V~~~~-~--~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~ 79 (833)
.+||||||++++++++.. ++ ++ .+||+|+|.. . ..++|++|.....+.|.+.- +
T Consensus 10 ~vgiDlGt~~t~i~~~~~-~~-~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~------------ 66 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGK-GI-VL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIE--A------------ 66 (335)
T ss_pred ceEEEcCCCcEEEEECCC-CE-EE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeE--E------------
Confidence 389999999999988633 32 32 2599999975 2 35799999766554443310 0
Q ss_pred HHHhhccCCceeeeCCCCceEEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHHHHHH
Q 003290 80 LQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDA 159 (833)
Q Consensus 80 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~~A 159 (833)
..|+ .+|.+ .. -+.+..+|+++.+.+..........+|||+|++|+..+|+++.++
T Consensus 67 ------~~pi-----~~G~i------------~d-~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~ 122 (335)
T PRK13930 67 ------IRPL-----KDGVI------------AD-FEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREA 122 (335)
T ss_pred ------eecC-----CCCeE------------cC-HHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 0121 13321 11 134555666666544333344467899999999999999999999
Q ss_pred HHHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHH
Q 003290 160 ATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLF 239 (833)
Q Consensus 160 a~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~ 239 (833)
++.+|++++.+++||+|||++|+.... .+..++|||+||||||++++.... ++. .+...+||++||+.|+
T Consensus 123 ~e~~g~~~~~lv~ep~AAa~a~g~~~~-----~~~~~lVvDiG~gttdvs~v~~g~----~~~-~~~~~lGG~~id~~l~ 192 (335)
T PRK13930 123 AEHAGAREVYLIEEPMAAAIGAGLPVT-----EPVGNMVVDIGGGTTEVAVISLGG----IVY-SESIRVAGDEMDEAIV 192 (335)
T ss_pred HHHcCCCeEEecccHHHHHHhcCCCcC-----CCCceEEEEeCCCeEEEEEEEeCC----EEe-ecCcCchhHHHHHHHH
Confidence 999999999999999999999875432 245689999999999999987653 222 4578999999999999
Q ss_pred HHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCc----eeEEEe--ccccCccceEEecHHHHHHHHHHHHHH
Q 003290 240 QHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPE----APLNIE--CLMEEKDVRGFIKRDEFEQISAPILER 313 (833)
Q Consensus 240 ~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~----~~~~ie--~l~~~~d~~~~itr~efe~l~~~~~~~ 313 (833)
+++..++ +.++. ...||++|+.++.... ..+.+. .+..+.+..+.|+|++|++++.+.+++
T Consensus 193 ~~l~~~~----~~~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~ 259 (335)
T PRK13930 193 QYVRRKY----NLLIG---------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQ 259 (335)
T ss_pred HHHHHHh----CCCCC---------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHH
Confidence 9998754 33322 1579999999975432 123332 223344567889999999999999999
Q ss_pred HHHHHHHHHHHcCCC--CCCcc-EEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhh
Q 003290 314 VKRPLEKALAETGLS--VEDVH-MVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAIL 380 (833)
Q Consensus 314 i~~~i~~~l~~~~~~--~~~i~-~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~l 380 (833)
+...|.++|+.++.. ...++ .|+|+||+|++|+++++|++.|+.++....||+++||+||++.+...
T Consensus 260 i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 260 IVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALENL 329 (335)
T ss_pred HHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhCh
Confidence 999999999987532 22345 49999999999999999999999888888899999999999987643
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.97 E-value=1.3e-30 Score=279.18 Aligned_cols=306 Identities=22% Similarity=0.335 Sum_probs=215.3
Q ss_pred EEEEEcCccceEEEEEECCceEEEcCCCCCccceEEEEEcCC-c--eEecHhhhhhhccCCCchHHHHHHhhCCCCCCHH
Q 003290 3 VVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDK-Q--RFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPE 79 (833)
Q Consensus 3 viGID~GTt~s~va~~~~~~~~ii~n~~~~r~tPs~V~~~~~-~--~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~ 79 (833)
-|||||||+++.|+. ++.+ ++.++ ||+|+|+.+ + ..+|++|..+..+.|.+. .
T Consensus 3 ~igIDLGT~~t~i~~-~~~G--iv~~e------pSvVA~~~~~~~i~avG~~A~~m~gktp~~i---------------~ 58 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYV-KGKG--IVLNE------PSVVAYDKDTGKILAVGDEAKAMLGKTPDNI---------------E 58 (326)
T ss_dssp EEEEEE-SSEEEEEE-TTTE--EEEEE------ES-EEEETTT--EEEESHHHHTTTTS-GTTE---------------E
T ss_pred ceEEecCcccEEEEE-CCCC--EEEec------CcEEEEECCCCeEEEEhHHHHHHhhcCCCcc---------------E
Confidence 589999999999854 3333 56555 999999864 2 358999965544444321 0
Q ss_pred HHHhhccCCceeeeCCCCceEEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHHHHHH
Q 003290 80 LQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDA 159 (833)
Q Consensus 80 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~~A 159 (833)
+ ..| ..+|.+ .=-++...+|+++.+.+.......-..++|+||+.-++.+|+++.+|
T Consensus 59 ~-----~~P-----l~~GvI-------------~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a 115 (326)
T PF06723_consen 59 V-----VRP-----LKDGVI-------------ADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDA 115 (326)
T ss_dssp E-----E-S-----EETTEE-------------SSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHH
T ss_pred E-----Ecc-----ccCCcc-------------cCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 0 111 123321 11245666666666655433223456799999999999999999999
Q ss_pred HHHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHH
Q 003290 160 ATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLF 239 (833)
Q Consensus 160 a~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~ 239 (833)
+..||.+-+.||.||.|||+..++.- ..+...||+|+||||||++++...+ + +.+. ...+||++||++|+
T Consensus 116 ~~~aGa~~V~li~ep~AaAiGaGl~i-----~~~~g~miVDIG~GtTdiavislgg--i-v~s~--si~~gG~~~DeaI~ 185 (326)
T PF06723_consen 116 ARQAGARKVYLIEEPIAAAIGAGLDI-----FEPRGSMIVDIGGGTTDIAVISLGG--I-VASR--SIRIGGDDIDEAII 185 (326)
T ss_dssp HHHTT-SEEEEEEHHHHHHHHTT--T-----TSSS-EEEEEE-SS-EEEEEEETTE--E-EEEE--EES-SHHHHHHHHH
T ss_pred HHHcCCCEEEEecchHHHHhcCCCCC-----CCCCceEEEEECCCeEEEEEEECCC--E-EEEE--EEEecCcchhHHHH
Confidence 99999999999999999999987643 2478899999999999999986553 2 2222 36899999999999
Q ss_pred HHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCc----eeEEEe--ccccCccceEEecHHHHHHHHHHHHHH
Q 003290 240 QHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPE----APLNIE--CLMEEKDVRGFIKRDEFEQISAPILER 313 (833)
Q Consensus 240 ~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~----~~~~ie--~l~~~~d~~~~itr~efe~l~~~~~~~ 313 (833)
+|+.+++ ++.+.. ..||++|+.++.... ..+.+. .+..+...++.|+.+++.+.|.+.+.+
T Consensus 186 ~~ir~~y----~l~Ig~---------~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~ 252 (326)
T PF06723_consen 186 RYIREKY----NLLIGE---------RTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQ 252 (326)
T ss_dssp HHHHHHH----SEE--H---------HHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHhh----CcccCH---------HHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHH
Confidence 9998764 455554 789999999865422 234443 356677789999999999999999999
Q ss_pred HHHHHHHHHHHcCCCC-CCc--cEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhch
Q 003290 314 VKRPLEKALAETGLSV-EDV--HMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCA 378 (833)
Q Consensus 314 i~~~i~~~l~~~~~~~-~~i--~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa 378 (833)
|...|+++|+...-.. .|| +.|+|+||+++++++.++|++.+|.++...-||..+|+.||.....
T Consensus 253 I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 253 IVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHHh
Confidence 9999999998753211 133 5799999999999999999999999999999999999999987654
No 27
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.96 E-value=6.4e-28 Score=247.48 Aligned_cols=310 Identities=24% Similarity=0.340 Sum_probs=240.3
Q ss_pred eEEEEEcCccceEEEEEECCceEEEcCCCCCccceEEEEEcC--Cc---eEecHhhhhhhccCCCchHHHHHHhhCCCCC
Q 003290 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGD--KQ---RFIGTAGAASSTMNPKNSISQIKRLIGRQFS 76 (833)
Q Consensus 2 ~viGID~GTt~s~va~~~~~~~~ii~n~~~~r~tPs~V~~~~--~~---~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~ 76 (833)
..|||||||.|+.|..- +.+ |++|+ ||+|++.. +. ..+|.+| |+++|+...
T Consensus 7 ~diGIDLGTanTlV~~k-~kg--IVl~e------PSVVAi~~~~~~~~v~aVG~eA---------------K~MlGrTP~ 62 (342)
T COG1077 7 NDIGIDLGTANTLVYVK-GKG--IVLNE------PSVVAIESEGKTKVVLAVGEEA---------------KQMLGRTPG 62 (342)
T ss_pred ccceeeecccceEEEEc-Cce--EEecC------ceEEEEeecCCCceEEEehHHH---------------HHHhccCCC
Confidence 36899999999999764 333 78887 99999976 22 3589999 667776654
Q ss_pred CHHHHHhhccCCceeeeCCCCceEEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHhcC-CCcCcEEEEecCccCHHHHHH
Q 003290 77 DPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLN-AAVVDCCIGIPVYFTDLQRRA 155 (833)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~ae~~~~-~~~~~~VITVP~~f~~~qR~a 155 (833)
+.. .+.+..+|.+ .--++...+|+|+.+......+ .....++|.||..-++-+|+|
T Consensus 63 ni~----------aiRPmkdGVI-------------Ad~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrA 119 (342)
T COG1077 63 NIV----------AIRPMKDGVI-------------ADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRA 119 (342)
T ss_pred Cce----------EEeecCCcEe-------------ecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHH
Confidence 421 1334444432 2224566667777665543222 344579999999999999999
Q ss_pred HHHHHHHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHH
Q 003290 156 VIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFD 235 (833)
Q Consensus 156 l~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D 235 (833)
+++|++.||.+.+.++.||.|||+..++ +...+..-+|||+||||||++++.+.+ +.... ...+||+.||
T Consensus 120 i~ea~~~aGa~~V~lieEp~aAAIGagl-----pi~ep~G~mvvDIGgGTTevaVISlgg----iv~~~-Sirv~GD~~D 189 (342)
T COG1077 120 IKEAAESAGAREVYLIEEPMAAAIGAGL-----PIMEPTGSMVVDIGGGTTEVAVISLGG----IVSSS-SVRVGGDKMD 189 (342)
T ss_pred HHHHHHhccCceEEEeccHHHHHhcCCC-----cccCCCCCEEEEeCCCceeEEEEEecC----EEEEe-eEEEecchhh
Confidence 9999999999999999999999997754 333567789999999999999999886 33333 4689999999
Q ss_pred HHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCC--------CceeEEEeccccCccceEEecHHHHHHHH
Q 003290 236 EVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSAN--------PEAPLNIECLMEEKDVRGFIKRDEFEQIS 307 (833)
Q Consensus 236 ~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~--------~~~~~~ie~l~~~~d~~~~itr~efe~l~ 307 (833)
+.|.+|+.+. |++-+.+ ..||++|+..... .+..+.-..+..+..-.++++-++..+.+
T Consensus 190 e~Ii~yvr~~----~nl~IGe---------~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal 256 (342)
T COG1077 190 EAIIVYVRKK----YNLLIGE---------RTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEAL 256 (342)
T ss_pred HHHHHHHHHH----hCeeecH---------HHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHH
Confidence 9999999865 4565655 6689999887432 12344445666777788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCC--CCCCcc-EEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhhc
Q 003290 308 APILERVKRPLEKALAETGL--SVEDVH-MVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILS 381 (833)
Q Consensus 308 ~~~~~~i~~~i~~~l~~~~~--~~~~i~-~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ls 381 (833)
++.+++|.+.++..|+...- ..+-++ .++|+||++.+..+.+.|++..+.++....+|-.|||.|+.+....+.
T Consensus 257 ~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 257 EEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred HHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchhhhhhH
Confidence 99999999999999998532 222234 499999999999999999999999999999999999999998776654
No 28
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.96 E-value=1.8e-28 Score=255.04 Aligned_cols=200 Identities=19% Similarity=0.288 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHHHHHHHHHcCCccEEeechhHHHHHHHhhhcCCCCCCCCc
Q 003290 115 TQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQL 194 (833)
Q Consensus 115 eel~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~ 194 (833)
-+..+++|+++++.++.+++.++.++|||||++|++.||+++.+|++.|||+++.+++||.|+|++|+..
T Consensus 39 ~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~---------- 108 (239)
T TIGR02529 39 FLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK---------- 108 (239)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC----------
Confidence 3578999999999999999999999999999999999999999999999999999999999999988531
Q ss_pred eEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhh
Q 003290 195 NVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKV 274 (833)
Q Consensus 195 ~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~ 274 (833)
..+|+|+||||||+++++ .|. ++.+ .+..+||++||+.|++++ +++. .+||++|+.
T Consensus 109 ~~~vvDiGggtt~i~i~~--~G~--i~~~-~~~~~GG~~it~~Ia~~~--------~i~~-----------~~AE~~K~~ 164 (239)
T TIGR02529 109 NGAVVDVGGGTTGISILK--KGK--VIYS-ADEPTGGTHMSLVLAGAY--------GISF-----------EEAEEYKRG 164 (239)
T ss_pred CcEEEEeCCCcEEEEEEE--CCe--EEEE-EeeecchHHHHHHHHHHh--------CCCH-----------HHHHHHHHh
Confidence 259999999999999965 343 3333 367899999999887543 3332 789999987
Q ss_pred cCCCCceeEEEeccccCccceEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHH
Q 003290 275 LSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEF 354 (833)
Q Consensus 275 LS~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~ 354 (833)
++. .+++.+++.++++++...+++.|+.. .++.|+|+||++++|++++.|++.
T Consensus 165 ~~~----------------------~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~~ 217 (239)
T TIGR02529 165 HKD----------------------EEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEKQ 217 (239)
T ss_pred cCC----------------------HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHHH
Confidence 541 45677899999999999999999864 457899999999999999999999
Q ss_pred hCCCCCCCCCchhHHHhHHHH
Q 003290 355 FGKEPRRTMNASECVARGCAL 375 (833)
Q Consensus 355 fg~~~~~~~npdeava~Gaa~ 375 (833)
||.++..+.||++++|.|||+
T Consensus 218 lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 218 LGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred hCCCcccCCCCCeehhheeec
Confidence 999999999999999999986
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.95 E-value=2.7e-26 Score=243.03 Aligned_cols=202 Identities=24% Similarity=0.337 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHHHHHHHHHcCCccEEeechhHHHHHHHhhhcCCCCCCCCc
Q 003290 115 TQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQL 194 (833)
Q Consensus 115 eel~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~ 194 (833)
-+.....|+++++.++.++|..+..++++||++|+..+|+++.++++.|||++..+++||.|++.+|.+.
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~---------- 135 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID---------- 135 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC----------
Confidence 3456778889999999988988999999999999999999999999999999999999999999877431
Q ss_pred eEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhh
Q 003290 195 NVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKV 274 (833)
Q Consensus 195 ~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~ 274 (833)
..+++|||||||+++++. ++.+ +.+ ++..+||++||+.|++++. ++ +.+||++|+.
T Consensus 136 ~~~vvDIGggtt~i~v~~--~g~~--~~~-~~~~~GG~~it~~Ia~~l~--------i~-----------~~eAE~lK~~ 191 (267)
T PRK15080 136 NGAVVDIGGGTTGISILK--DGKV--VYS-ADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEQYKRD 191 (267)
T ss_pred CcEEEEeCCCcEEEEEEE--CCeE--EEE-ecccCchHHHHHHHHHHhC--------CC-----------HHHHHHHHhc
Confidence 258999999999999964 4433 233 4789999999999987752 22 2688999987
Q ss_pred cCCCCceeEEEeccccCccceEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHH
Q 003290 275 LSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEF 354 (833)
Q Consensus 275 LS~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~ 354 (833)
++ +++++.++++++++++...+++.|+.. .++.|+|+||+|++|.+++.+++.
T Consensus 192 ~~----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~ 244 (267)
T PRK15080 192 PK----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQ 244 (267)
T ss_pred cC----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHH
Confidence 53 357889999999999999999999863 678999999999999999999999
Q ss_pred hCCCCCCCCCchhHHHhHHHHhc
Q 003290 355 FGKEPRRTMNASECVARGCALQC 377 (833)
Q Consensus 355 fg~~~~~~~npdeava~Gaa~~a 377 (833)
||.++....||+.++|.|||++|
T Consensus 245 lg~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 245 TGLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred hCCCcccCCCchHHHHHHHHhhC
Confidence 99999999999999999999875
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.90 E-value=5.5e-22 Score=221.41 Aligned_cols=194 Identities=17% Similarity=0.286 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcc
Q 003290 151 LQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVG 230 (833)
Q Consensus 151 ~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lG 230 (833)
...+.+.+|++.|||++..++.||.|+|++|.... .....++++|+||||||++++. .+.+.. .....+|
T Consensus 158 ~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~-----~~~~~~~vvDiG~gtt~i~i~~--~g~~~~---~~~i~~G 227 (371)
T TIGR01174 158 TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTED-----EKELGVCLIDIGGGTTDIAVYT--GGSIRY---TKVIPIG 227 (371)
T ss_pred HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcc-----hhcCCEEEEEeCCCcEEEEEEE--CCEEEE---Eeeecch
Confidence 34577888999999999999999999999885322 1356799999999999999975 343322 2356899
Q ss_pred cHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCC------CceeEEEeccccCccceEEecHHHHH
Q 003290 231 GRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSAN------PEAPLNIECLMEEKDVRGFIKRDEFE 304 (833)
Q Consensus 231 G~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~------~~~~~~ie~l~~~~d~~~~itr~efe 304 (833)
|++||+.|.+.+. + .+.+||++|+.++.. ....+.+..+ +.+....|+|++|+
T Consensus 228 G~~it~~i~~~l~--------~-----------~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~is~~~l~ 286 (371)
T TIGR01174 228 GNHITKDIAKALR--------T-----------PLEEAERIKIKYGCASIPLEGPDENIEIPSV--GERPPRSLSRKELA 286 (371)
T ss_pred HHHHHHHHHHHhC--------C-----------CHHHHHHHHHHeeEecccCCCCCCEEEeccC--CCCCCeEEcHHHHH
Confidence 9999999876531 1 247899999999753 2345666554 34667899999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHcCCCCCCccE-EEEeCCCCChHHHHHHHHHHhCCCCCC------------CCCchhHHH
Q 003290 305 QISAPILERVKRPLE-KALAETGLSVEDVHM-VEVVGSSSRVPAIIKILTEFFGKEPRR------------TMNASECVA 370 (833)
Q Consensus 305 ~l~~~~~~~i~~~i~-~~l~~~~~~~~~i~~-ViLvGG~sriP~v~~~l~~~fg~~~~~------------~~npdeava 370 (833)
+++.+.++++...|+ +.|+.++.. .+++. |+|+||+|++|.|++++++.||.++.. .-+|..++|
T Consensus 287 ~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~~~~~~~p~~~~a 365 (371)
T TIGR01174 287 EIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGLTEDVNDPEYSTA 365 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCchhhcCCcHHHHH
Confidence 999999999999997 999998876 67776 999999999999999999999854311 126888999
Q ss_pred hHHHHh
Q 003290 371 RGCALQ 376 (833)
Q Consensus 371 ~Gaa~~ 376 (833)
.|.++|
T Consensus 366 ~Gl~~~ 371 (371)
T TIGR01174 366 VGLLLY 371 (371)
T ss_pred HHHHhC
Confidence 998764
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.87 E-value=1.1e-20 Score=213.38 Aligned_cols=195 Identities=14% Similarity=0.199 Sum_probs=147.8
Q ss_pred HHHHHHHHHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHH
Q 003290 154 RAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRD 233 (833)
Q Consensus 154 ~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~ 233 (833)
+.+..|++.|||++..++.||.|+|+++.... .....++++||||||||++++. +|.+. +.....+||++
T Consensus 169 ~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~-----e~~~gv~vvDiGggtTdisv~~--~G~l~---~~~~i~~GG~~ 238 (420)
T PRK09472 169 KNIVKAVERCGLKVDQLIFAGLASSYAVLTED-----ERELGVCVVDIGGGTMDIAVYT--GGALR---HTKVIPYAGNV 238 (420)
T ss_pred HHHHHHHHHcCCeEeeEEehhhHHHHHhcChh-----hhhcCeEEEEeCCCceEEEEEE--CCEEE---EEeeeechHHH
Confidence 33457999999999999999999999885332 1357799999999999999985 44432 22357899999
Q ss_pred HHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCC------CceeEEEeccccCccceEEecHHHHHHHH
Q 003290 234 FDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSAN------PEAPLNIECLMEEKDVRGFIKRDEFEQIS 307 (833)
Q Consensus 234 ~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~------~~~~~~ie~l~~~~d~~~~itr~efe~l~ 307 (833)
|++.|++.|. +. +.+||++|+.+... ....+.++.+... ....++|.+|.+++
T Consensus 239 it~dIa~~l~--------i~-----------~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~--~~~~i~~~~l~~ii 297 (420)
T PRK09472 239 VTSDIAYAFG--------TP-----------PSDAEAIKVRHGCALGSIVGKDESVEVPSVGGR--PPRSLQRQTLAEVI 297 (420)
T ss_pred HHHHHHHHhC--------cC-----------HHHHHHHHHhcceeccccCCCCceeEecCCCCC--CCeEEcHHHHHHHH
Confidence 9999986542 21 27899999765421 2345666554322 23489999999999
Q ss_pred HHHHHHHHHHHHH-------HHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCCCCCC------------CCCchhH
Q 003290 308 APILERVKRPLEK-------ALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRR------------TMNASEC 368 (833)
Q Consensus 308 ~~~~~~i~~~i~~-------~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~------------~~npdea 368 (833)
.+.+++|...|++ .|..+++....++.|+|+||++++|.|++++++.|+.++.. ..+|..+
T Consensus 298 ~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~~~~~~~P~~a 377 (420)
T PRK09472 298 EPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYS 377 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCChhhcCCcHHH
Confidence 9976666666654 55667887778999999999999999999999999854421 2489999
Q ss_pred HHhHHHHhchh
Q 003290 369 VARGCALQCAI 379 (833)
Q Consensus 369 va~Gaa~~aa~ 379 (833)
+|.|.++++..
T Consensus 378 ta~Gl~~~~~~ 388 (420)
T PRK09472 378 TAVGLLHYGKE 388 (420)
T ss_pred HHHHHHHHhhh
Confidence 99999999763
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.76 E-value=1.4e-16 Score=175.31 Aligned_cols=316 Identities=20% Similarity=0.257 Sum_probs=213.0
Q ss_pred EEEEEcCccceEEEEE--ECCc-eEEEcCCCCCccceEEEEEcCCceEecHhhhhhhccCCCchHHHHHHhhCCCCCCHH
Q 003290 3 VVGFDLGNESCIVAVA--RQRG-IDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPE 79 (833)
Q Consensus 3 viGID~GTt~s~va~~--~~~~-~~ii~n~~~~r~tPs~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~ 79 (833)
++|+|+||+.+++.+. .+++ ++++--. ..||--- .++.+.--++..++.+ .++....++.|....+..
T Consensus 8 iv~LDIGTskV~~lVge~~~~g~i~iig~g----~~~SrGi--k~G~I~di~~~~~sI~---~av~~AE~mag~~i~~v~ 78 (418)
T COG0849 8 IVGLDIGTSKVKALVGELRPDGRLNIIGVG----SHPSRGI--KKGVIVDLDAAAQSIK---KAVEAAERMAGCEIKSVI 78 (418)
T ss_pred EEEEEccCcEEEEEEEEEcCCCeEEEEeee----cccCccc--ccceEEcHHHHHHHHH---HHHHHHHHhcCCCcceEE
Confidence 8999999999987665 3443 5555210 1111100 1344555555444443 566677777777665321
Q ss_pred HHHhhccCCceeeeCCCCceE-----EEEEEcCceeeeCHHHHHHHHHHHHHHHHHHhcCCCcCc---------------
Q 003290 80 LQRDLKSLPFAVTEGPDGYPL-----IHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVD--------------- 139 (833)
Q Consensus 80 ~~~~~~~~~~~~~~~~~g~~~-----~~v~~~~~~~~~~~eel~a~~L~~l~~~ae~~~~~~~~~--------------- 139 (833)
+ ....+.+. ..+...++ +.++.+++-. +.+.|......+-..
T Consensus 79 v------------s~sG~~i~s~~~~g~v~i~~~-~eIt~~DI~r-----vl~~A~~~~~~~~~~ilh~~p~~y~vD~~~ 140 (418)
T COG0849 79 V------------SLSGNHIKSQNVNGEVSISEE-KEITQEDIER-----VLEAAKAVAIPPEREILHVIPQEYIVDGQE 140 (418)
T ss_pred E------------EeccceeEEEeeEEEEEcCCC-CccCHHHHHH-----HHHHHHhhccCCCceEEEEeeeEEEECCcc
Confidence 1 11111111 11222232 5677777653 333332222212222
Q ss_pred -----------------EEEEecCccCHHHHHHHHHHHHHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeC
Q 003290 140 -----------------CCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIG 202 (833)
Q Consensus 140 -----------------~VITVP~~f~~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~G 202 (833)
.+||+|..+ -+.|.+|++.+||++..++-+|.|+|.+..... .+.-+++++|||
T Consensus 141 ~I~dP~gm~G~rL~v~vhvit~~~~~----~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~d-----EkelGv~lIDiG 211 (418)
T COG0849 141 GIKDPLGMSGVRLEVEVHVITGPKNI----LENLEKCVERAGLKVDNIVLEPLASALAVLTED-----EKELGVALIDIG 211 (418)
T ss_pred ccCCccccccceEEEEEEEEEcchHH----HHHHHHHHHHhCCCeeeEEEehhhhhhhccCcc-----cHhcCeEEEEeC
Confidence 345555444 356788889999999999999999998664322 136789999999
Q ss_pred CceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCC----
Q 003290 203 HASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSAN---- 278 (833)
Q Consensus 203 ggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~---- 278 (833)
|||||+++++ +|.+ .+.+..++||++++..|+.-|.-.| ..||++|..+...
T Consensus 212 ~GTTdIai~~--~G~l---~~~~~ipvgG~~vT~DIa~~l~t~~-------------------~~AE~iK~~~g~a~~~~ 267 (418)
T COG0849 212 GGTTDIAIYK--NGAL---RYTGVIPVGGDHVTKDIAKGLKTPF-------------------EEAERIKIKYGSALISL 267 (418)
T ss_pred CCcEEEEEEE--CCEE---EEEeeEeeCccHHHHHHHHHhCCCH-------------------HHHHHHHHHcCccccCc
Confidence 9999999965 4433 3334579999999999987654322 7899999988433
Q ss_pred --CceeEEEeccccCccceEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhC
Q 003290 279 --PEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFG 356 (833)
Q Consensus 279 --~~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg 356 (833)
.+..+.++...++ ....++|..+-+++++.+.++..+++..|+++++...-...|+|+||++.+|++.++.++.|+
T Consensus 268 ~~~~~~i~v~~vg~~--~~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~ 345 (418)
T COG0849 268 ADDEETIEVPSVGSD--IPRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFG 345 (418)
T ss_pred CCCcceEecccCCCc--ccchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcC
Confidence 2345666665443 367899999999999999999999999999999986777999999999999999999999997
Q ss_pred CCC--CC----------CCCchhHHHhHHHHhchhh
Q 003290 357 KEP--RR----------TMNASECVARGCALQCAIL 380 (833)
Q Consensus 357 ~~~--~~----------~~npdeava~Gaa~~aa~l 380 (833)
.++ .. ..+|..+.|.|..++++..
T Consensus 346 ~~vRig~P~~~~Gl~d~~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 346 RPVRLGVPLNIVGLTDIARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred CceEeCCCccccCchhhccCchhhhhHHHHHHHhhc
Confidence 543 11 2368899999999988754
No 33
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.63 E-value=4.6e-15 Score=166.04 Aligned_cols=236 Identities=13% Similarity=0.088 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHHHHHH-HHHcCCccEEeechhHHHHHHHhhhcCCCCCCCCce
Q 003290 117 VLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDA-ATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLN 195 (833)
Q Consensus 117 l~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~~A-a~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~ 195 (833)
.+..+++++....- .....-..++|++|.+++..+|+.+.+. ++..|++.+.++.++.+|+++|+. .+
T Consensus 76 ~~e~~~~~~~~~~l-~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~----------~~ 144 (371)
T cd00012 76 DMEKIWDHLFFNEL-KVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGR----------TT 144 (371)
T ss_pred HHHHHHHHHHHHhc-CCCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCC----------Ce
Confidence 34455555543210 0112346799999999998888888774 677999999999999999988752 57
Q ss_pred EEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhc
Q 003290 196 VAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVL 275 (833)
Q Consensus 196 vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~L 275 (833)
.+|+|+|+++|+++.+. +|.+ +.......++||+++|+.|.++|..... ..+.. .-...++.+|+.+
T Consensus 145 ~lVVDiG~~~t~i~pv~--~G~~-~~~~~~~~~~GG~~l~~~l~~~l~~~~~---~~~~~-------~~~~~~~~iKe~~ 211 (371)
T cd00012 145 GLVVDSGDGVTHVVPVY--DGYV-LPHAIKRLDLAGRDLTRYLKELLRERGY---ELNSS-------DEREIVRDIKEKL 211 (371)
T ss_pred EEEEECCCCeeEEEEEE--CCEE-chhhheeccccHHHHHHHHHHHHHhcCC---Cccch-------hHHHHHHHHHHhh
Confidence 89999999999988864 3332 2223335689999999999998865421 11111 1124466666665
Q ss_pred CCCCce-------------eEE-EeccccCccceEEecHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCC--CC
Q 003290 276 SANPEA-------------PLN-IECLMEEKDVRGFIKRDEFEQISAPILE---------RVKRPLEKALAETGLS--VE 330 (833)
Q Consensus 276 S~~~~~-------------~~~-ie~l~~~~d~~~~itr~efe~l~~~~~~---------~i~~~i~~~l~~~~~~--~~ 330 (833)
..-... ... .-.+.++ ..+.++.+.| .+++.+++ .+...|.++|.....+ ..
T Consensus 212 ~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~--~~i~~~~er~-~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~ 288 (371)
T cd00012 212 CYVALDIEEEQDKSAKETSLLEKTYELPDG--RTIKVGNERF-RAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKD 288 (371)
T ss_pred eeecCCHHHHHHhhhccCCccceeEECCCC--eEEEEChHHh-hChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHH
Confidence 321100 000 0111122 2345555443 33443443 6778888888775332 22
Q ss_pred CccEEEEeCCCCChHHHHHHHHHHhCC----------CCCCCCCchhHHHhHHHHhchh
Q 003290 331 DVHMVEVVGSSSRVPAIIKILTEFFGK----------EPRRTMNASECVARGCALQCAI 379 (833)
Q Consensus 331 ~i~~ViLvGG~sriP~v~~~l~~~fg~----------~~~~~~npdeava~Gaa~~aa~ 379 (833)
-++.|+|+||+|++|.+.+.|.+.++. .+....+|..++-+||+++|..
T Consensus 289 l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 289 LYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 367899999999999999999988851 1234567888999999998864
No 34
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.57 E-value=5e-15 Score=141.33 Aligned_cols=196 Identities=20% Similarity=0.277 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHHHHHHHHHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEE
Q 003290 120 MLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFV 199 (833)
Q Consensus 120 ~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~ 199 (833)
.+.+++++.+|.++|..+++..-++|+.--+...+...+..+.||+.++..++||||||.-.++ ..-.|+
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l----------~dg~VV 145 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQL----------DDGGVV 145 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhcc----------CCCcEE
Confidence 3567889999999999999999999999888888888899999999999999999999854332 234789
Q ss_pred EeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCC
Q 003290 200 DIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANP 279 (833)
Q Consensus 200 D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~ 279 (833)
|+|||||-+|+++-.+ |+.+. |...||.++...|+-+ |++++ .+||..|..--...
T Consensus 146 DiGGGTTGIsi~kkGk----Viy~A-DEpTGGtHmtLvlAG~--------ygi~~-----------EeAE~~Kr~~k~~~ 201 (277)
T COG4820 146 DIGGGTTGISIVKKGK----VIYSA-DEPTGGTHMTLVLAGN--------YGISL-----------EEAEQYKRGHKKGE 201 (277)
T ss_pred EeCCCcceeEEEEcCc----EEEec-cCCCCceeEEEEEecc--------cCcCH-----------hHHHHhhhccccch
Confidence 9999999999977554 55555 8899999888776532 55554 66777775321111
Q ss_pred ceeEEEeccccCccceEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCCCC
Q 003290 280 EAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEP 359 (833)
Q Consensus 280 ~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~ 359 (833)
+.=..+.|+++++...+.+-|+..+ |..+.|+||+|.-|.+.+..++.|+.++
T Consensus 202 ----------------------Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l~l~v 254 (277)
T COG4820 202 ----------------------EIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQLALQV 254 (277)
T ss_pred ----------------------hcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHhcccc
Confidence 1112467999999999999888755 5679999999999999999999999888
Q ss_pred CCCCCchhHHHhHHHHh
Q 003290 360 RRTMNASECVARGCALQ 376 (833)
Q Consensus 360 ~~~~npdeava~Gaa~~ 376 (833)
..+..|....-.|.|+.
T Consensus 255 ~~P~~p~y~TPLgIA~s 271 (277)
T COG4820 255 HLPQHPLYMTPLGIASS 271 (277)
T ss_pred ccCCCcceechhhhhhc
Confidence 88887777666666543
No 35
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.56 E-value=6.8e-13 Score=145.84 Aligned_cols=213 Identities=14% Similarity=0.185 Sum_probs=141.5
Q ss_pred CcCcEE--EEecCccCHHHH-HHHHHHHHH------------cCCccEEeechhHHHHHHHhhhcCCC---CCCCCceEE
Q 003290 136 AVVDCC--IGIPVYFTDLQR-RAVIDAATI------------AGLHPLRLFHETTATALAYGIYKTDL---PENDQLNVA 197 (833)
Q Consensus 136 ~~~~~V--ITVP~~f~~~qR-~al~~Aa~~------------AGl~~~~li~EptAaAl~y~~~~~~~---~~~~~~~vl 197 (833)
.+.+++ ...|..+-..++ ..+.+.... .-+..+.++.+|.+|.+.+....... .......++
T Consensus 109 ~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~il 188 (344)
T PRK13917 109 EVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVS 188 (344)
T ss_pred CcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEE
Confidence 344444 589998865554 666655432 11234678999999988777643211 111345789
Q ss_pred EEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCC
Q 003290 198 FVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSA 277 (833)
Q Consensus 198 v~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~ 277 (833)
|+|+|+||||++++. ++.+ +...++....|..++.+.|.+++..+. ++..+. + .++.+ + |..
T Consensus 189 vIDIG~~TtD~~v~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~---~~~~~~--~---~~ie~----~---l~~ 250 (344)
T PRK13917 189 VIDFGSGTTDLDTIQ--NLKR-VEEESFVIPKGTIDVYKRIASHISKKE---EGASIT--P---YMLEK----G---LEY 250 (344)
T ss_pred EEEcCCCcEEEEEEe--CcEE-cccccccccchHHHHHHHHHHHHHhhC---CCCCCC--H---HHHHH----H---HHc
Confidence 999999999999975 4444 344455678999999999998885432 233332 1 11111 1 211
Q ss_pred CCceeEEEeccccCccceEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCC
Q 003290 278 NPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGK 357 (833)
Q Consensus 278 ~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~ 357 (833)
. .+.+. .... +.+ ++++.++++.+++++...|...+.. ..+++.|+|+||++++ +++.|++.|+.
T Consensus 251 g---~i~~~---~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~ 315 (344)
T PRK13917 251 G---ACKLN---QKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSD 315 (344)
T ss_pred C---cEEeC---CCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCC
Confidence 1 11111 1111 122 5668889999999999988887753 3579999999999987 88999999984
Q ss_pred CCCCCCCchhHHHhHHHHhchhhcC
Q 003290 358 EPRRTMNASECVARGCALQCAILSP 382 (833)
Q Consensus 358 ~~~~~~npdeava~Gaa~~aa~ls~ 382 (833)
+....||..|.|+|...+|..+..
T Consensus 316 -~~~~~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 316 -VEKADESQFANVRGYYKYGELLKN 339 (344)
T ss_pred -eEEcCChHHHHHHHHHHHHHHHhc
Confidence 356679999999999998875543
No 36
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.55 E-value=4.8e-14 Score=158.04 Aligned_cols=299 Identities=15% Similarity=0.175 Sum_probs=179.7
Q ss_pred eEEEEEcCccceEEEEEECCceEEEcCCCCCccceEEEEEcCC---------ceEecHhhhhhhccCCCchHHHHHHhhC
Q 003290 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDK---------QRFIGTAGAASSTMNPKNSISQIKRLIG 72 (833)
Q Consensus 2 ~viGID~GTt~s~va~~~~~~~~ii~n~~~~r~tPs~V~~~~~---------~~~~G~~A~~~~~~~p~~~~~~~k~llG 72 (833)
++|+||+||.++++++..+..+.++ +||+|+...+ ..++|++|.... +
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~---------------~ 58 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVV--------FPSIVGRPKDGKGMVGDAKDTFVGDEAQEKR---------------G 58 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEE--------ccceeeEecccccccCCCcceEecchhhhcC---------------C
Confidence 4799999999999998765543333 3888877532 135677662211 0
Q ss_pred CCCCCHHHHHhhccCCceeeeCCCCceEEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHhcCC--CcCcEEEEecCccCH
Q 003290 73 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNA--AVVDCCIGIPVYFTD 150 (833)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~ae~~~~~--~~~~~VITVP~~f~~ 150 (833)
.. .-.+|+ .+|.+ .--+.+..+++++... .++. .-..++||+|...+.
T Consensus 59 ~~---------~~~~P~-----~~G~i-------------~d~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~ 108 (373)
T smart00268 59 GL---------ELKYPI-----EHGIV-------------ENWDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPK 108 (373)
T ss_pred Cc---------eecCCC-----cCCEE-------------eCHHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCH
Confidence 00 011222 13321 1123455666666542 2222 235799999999999
Q ss_pred HHHHHHHHHH-HHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCc
Q 003290 151 LQRRAVIDAA-TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSV 229 (833)
Q Consensus 151 ~qR~al~~Aa-~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~l 229 (833)
.+|+.+.+.+ +..|++-+.++.++.+|+++++ ..+.||+|+|+++|+++.+. +|.. +........+
T Consensus 109 ~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g----------~~~~lVVDiG~~~t~v~pv~--~G~~-~~~~~~~~~~ 175 (373)
T smart00268 109 SNREKILEIMFETFNFPALYIAIQAVLSLYASG----------RTTGLVIDSGDGVTHVVPVV--DGYV-LPHAIKRIDI 175 (373)
T ss_pred HHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC----------CCEEEEEecCCCcceEEEEE--CCEE-chhhheeccC
Confidence 9999998886 6789999999999999998775 35789999999999999875 3332 3332334689
Q ss_pred ccHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCc---------------eeEEEe-ccccCcc
Q 003290 230 GGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPE---------------APLNIE-CLMEEKD 293 (833)
Q Consensus 230 GG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~---------------~~~~ie-~l~~~~d 293 (833)
||.++|+.|.++|...- ...+.. .-...++.+|+.+..-.. ...... .+.++..
T Consensus 176 GG~~l~~~l~~~l~~~~---~~~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lpdg~~ 245 (373)
T smart00268 176 AGRDLTDYLKELLSERG---YQFNSS-------AEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELPDGNT 245 (373)
T ss_pred cHHHHHHHHHHHHHhcC---CCCCcH-------HHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEECCCCCE
Confidence 99999999998876510 011111 112345555555421100 000000 1122322
Q ss_pred ceEEecHHHHHHHHHHHH---------HHHHHHHHHHHHHcCCCC--CCccEEEEeCCCCChHHHHHHHHHHhC------
Q 003290 294 VRGFIKRDEFEQISAPIL---------ERVKRPLEKALAETGLSV--EDVHMVEVVGSSSRVPAIIKILTEFFG------ 356 (833)
Q Consensus 294 ~~~~itr~efe~l~~~~~---------~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~sriP~v~~~l~~~fg------ 356 (833)
+ .+..+.| .+++.++ ..|.+.|.++|..+.... .-.+.|+|+||+|++|++.++|.+.+.
T Consensus 246 ~--~~~~er~-~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~ 322 (373)
T smart00268 246 I--KVGNERF-RIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKK 322 (373)
T ss_pred E--EEChHHe-eCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCC
Confidence 2 3332222 2233333 356777777777653221 113679999999999999999988873
Q ss_pred C--CCCCCCCchhHHHhHHHHhchh
Q 003290 357 K--EPRRTMNASECVARGCALQCAI 379 (833)
Q Consensus 357 ~--~~~~~~npdeava~Gaa~~aa~ 379 (833)
. .+....++..++=+||+++|..
T Consensus 323 ~~v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 323 LKVKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred ceeEEecCCCCccceEeCcccccCc
Confidence 1 1233345556677787777653
No 37
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.35 E-value=2e-10 Score=130.19 Aligned_cols=206 Identities=12% Similarity=0.067 Sum_probs=129.7
Q ss_pred CcEEEEecCccCHHHHHHHHHHH-HHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCC
Q 003290 138 VDCCIGIPVYFTDLQRRAVIDAA-TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKG 216 (833)
Q Consensus 138 ~~~VITVP~~f~~~qR~al~~Aa-~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~ 216 (833)
..++||.|..++..+|+.+.+.+ +..|++-+.+..++.+++++++............+-||+|+|+|+|+++.+. +|
T Consensus 103 ~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~--~G 180 (414)
T PTZ00280 103 HYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVV--DG 180 (414)
T ss_pred CceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEE--CC
Confidence 46899999999999999887765 6669999999999999988763321110000134569999999999988753 33
Q ss_pred eEEEEEeeCCCCcccHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCc----------------
Q 003290 217 QLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPE---------------- 280 (833)
Q Consensus 217 ~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~---------------- 280 (833)
.. +........+||++++..|.++|... +..+... ..+..++.+|+.+.....
T Consensus 181 ~~-l~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~ 249 (414)
T PTZ00280 181 YV-IGSSIKHIPLAGRDITNFIQQMLRER-----GEPIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNH 249 (414)
T ss_pred EE-cccceEEecCcHHHHHHHHHHHHHHc-----CCCCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccc
Confidence 32 22222245799999999999988643 1122211 112346666766532110
Q ss_pred -eeEEEeccccCccceEEecHHHHHH---HHHHHH------HHHHHHHHHHHHHcCCCC--CCccEEEEeCCCCChHHHH
Q 003290 281 -APLNIECLMEEKDVRGFIKRDEFEQ---ISAPIL------ERVKRPLEKALAETGLSV--EDVHMVEVVGSSSRVPAII 348 (833)
Q Consensus 281 -~~~~ie~l~~~~d~~~~itr~efe~---l~~~~~------~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~sriP~v~ 348 (833)
..+..+....+....+.|..+.|.- ++.|-+ ..+.+.|.++|..+.... .-.+.|+|+||+|.+|++.
T Consensus 250 ~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~ 329 (414)
T PTZ00280 250 FKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFD 329 (414)
T ss_pred cceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHH
Confidence 0111211112333466777766642 233321 145677777777654321 2246899999999999999
Q ss_pred HHHHHHhC
Q 003290 349 KILTEFFG 356 (833)
Q Consensus 349 ~~l~~~fg 356 (833)
++|.+.+.
T Consensus 330 eRL~~El~ 337 (414)
T PTZ00280 330 KRLQRDVR 337 (414)
T ss_pred HHHHHHHH
Confidence 99998885
No 38
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.28 E-value=3.7e-10 Score=125.40 Aligned_cols=183 Identities=15% Similarity=0.165 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHcCCccEEeechhHHHHHHHhhhcCCCC-CCCCc-eEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCC
Q 003290 150 DLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLP-ENDQL-NVAFVDIGHASLQVCIAGFKKGQLKILGHSFDR 227 (833)
Q Consensus 150 ~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~-~~~~~-~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~ 227 (833)
....+.+.++++.||+++..+.-+|.|.+-.+.+....+. ..... .++++|+|+++|+++++. +|.+.. ....
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~--~g~~~~---~r~i 216 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLH--PGRMLF---TREV 216 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEE--CCeEEE---EEEe
Confidence 3556778899999999999999899888765531111111 11233 499999999999999964 443322 2356
Q ss_pred CcccHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCceeEEEeccccCccceEEecHHHHHHHH
Q 003290 228 SVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQIS 307 (833)
Q Consensus 228 ~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~ie~l~~~~d~~~~itr~efe~l~ 307 (833)
.+||.+|++.|.+.+ +++ +..||+.|....... . . -.+++
T Consensus 217 ~~G~~~i~~~i~~~~--------~~~-----------~~~Ae~~k~~~~~~~-----------~--~--------~~~~~ 256 (348)
T TIGR01175 217 PFGTRQLTSELSRAY--------GLN-----------PEEAGEAKQQGGLPL-----------L--Y--------DPEVL 256 (348)
T ss_pred echHHHHHHHHHHHc--------CCC-----------HHHHHHHHhcCCCCC-----------c--h--------hHHHH
Confidence 899999999887432 332 267888876532111 0 0 02345
Q ss_pred HHHHHHHHHHHHHHHHHc--CCCCCCccEEEEeCCCCChHHHHHHHHHHhCCCCCC-------------------CCCch
Q 003290 308 APILERVKRPLEKALAET--GLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRR-------------------TMNAS 366 (833)
Q Consensus 308 ~~~~~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~-------------------~~npd 366 (833)
++.++++..-|.+.|+-. ......++.|+|+||+++++.+.+.+++.||.++.. ..+|.
T Consensus 257 ~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P~~~~~~~~~~~~~~~~~~~~~ 336 (348)
T TIGR01175 257 RRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMALDAKVDAGRLAVDAPA 336 (348)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecChHHhcccCccCCHHHHHhhhHH
Confidence 566666666666666432 223346899999999999999999999999854321 12456
Q ss_pred hHHHhHHHHhc
Q 003290 367 ECVARGCALQC 377 (833)
Q Consensus 367 eava~Gaa~~a 377 (833)
.++|.|+|+++
T Consensus 337 ~~~a~Glalr~ 347 (348)
T TIGR01175 337 LMTALGLALRG 347 (348)
T ss_pred HHHHhhHhhcC
Confidence 67888888764
No 39
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.27 E-value=3.6e-11 Score=135.84 Aligned_cols=309 Identities=15% Similarity=0.188 Sum_probs=174.8
Q ss_pred eEEEEEcCccceEEEEEECCceEEEcCCCCCccceEEEEEcCC-----ceEecHhhhhhhccCCCchHHHHHHhhCCCCC
Q 003290 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDK-----QRFIGTAGAASSTMNPKNSISQIKRLIGRQFS 76 (833)
Q Consensus 2 ~viGID~GTt~s~va~~~~~~~~ii~n~~~~r~tPs~V~~~~~-----~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~ 76 (833)
.+|-||+|+.++++++..+..+.+ .+||+++.... ..++|..+... .+..
T Consensus 5 ~~vViD~Gs~~~k~G~age~~P~~--------v~ps~~~~~~~~~~~~~~~~g~~~~~~---~~~~-------------- 59 (393)
T PF00022_consen 5 KPVVIDNGSSTIKAGFAGEDLPRV--------VIPSVVGRPRDKNSSNDYYVGDEALSP---RSNL-------------- 59 (393)
T ss_dssp SEEEEEECSSEEEEEETTSSS-SE--------EEESEEEEESSSSSSSSCEETHHHHHT---GTGE--------------
T ss_pred CEEEEECCCceEEEEECCCCCCCC--------cCCCccccccccccceeEEeecccccc---hhhe--------------
Confidence 578999999999999974443332 24888776433 23567663220 0000
Q ss_pred CHHHHHhhccCCceeeeCCCCceEEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHHH
Q 003290 77 DPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAV 156 (833)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al 156 (833)
.-+.|+ .+|. +.--+.+..+++++.... -.....-..++++.|.+++..+|+.+
T Consensus 60 -------~~~~p~-----~~g~-------------i~~~~~~e~i~~~~~~~~-l~~~~~~~~vll~~~~~~~~~~r~~l 113 (393)
T PF00022_consen 60 -------ELRSPI-----ENGV-------------IVDWDALEEIWDYIFSNL-LKVDPSDHPVLLTEPPFNPRSQREKL 113 (393)
T ss_dssp -------EEEESE-----ETTE-------------ESSHHHHHHHHHHHHHTT-T-SSGGGSEEEEEESTT--HHHHHHH
T ss_pred -------eeeeec-----cccc-------------cccccccccccccccccc-cccccccceeeeeccccCCchhhhhh
Confidence 000111 1221 111234455566555421 11122345799999999999999887
Q ss_pred HHHH-HHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHH
Q 003290 157 IDAA-TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFD 235 (833)
Q Consensus 157 ~~Aa-~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D 235 (833)
.+.+ +..|++-+.++.++.+|+++++. .+-||+|+|++.|.|+-| .+|.. +........+||++++
T Consensus 114 ~e~lfE~~~~~~v~~~~~~~~a~~~~g~----------~tglVVD~G~~~t~v~pV--~dG~~-~~~~~~~~~~GG~~lt 180 (393)
T PF00022_consen 114 AEILFEKFGVPSVYFIPSPLLALYASGR----------TTGLVVDIGYSSTSVVPV--VDGYV-LPHSIKRSPIGGDDLT 180 (393)
T ss_dssp HHHHHHTS--SEEEEEEHHHHHHHHTTB----------SSEEEEEESSS-EEEEEE--ETTEE--GGGBEEES-SHHHHH
T ss_pred hhhhhcccccceeeeeeccccccccccc----------ccccccccceeeeeeeee--eeccc-cccccccccccHHHHH
Confidence 7664 67899999999999999877753 356999999999988775 33432 2222224679999999
Q ss_pred HHHHHHHHHH-HHh--hhccCcc----CCHHHHHHHHHHHHHHhhhc---C------------CCCceeEEEeccccCcc
Q 003290 236 EVLFQHFAAK-FKE--EYKIDVS----QNARASLRLRVACEKLKKVL---S------------ANPEAPLNIECLMEEKD 293 (833)
Q Consensus 236 ~~l~~~l~~~-~~~--k~~~~~~----~~~~~~~rL~~~aek~K~~L---S------------~~~~~~~~ie~l~~~~d 293 (833)
..|.++|..+ +.- .+...-. ...-....-...++.+|+.+ + ......+.+ .++.
T Consensus 181 ~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~l---Pdg~- 256 (393)
T PF00022_consen 181 EYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYEL---PDGQ- 256 (393)
T ss_dssp HHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE----TTSS-
T ss_pred HHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceeccc---cccc-
Confidence 9999988873 100 0000000 00000011112233333332 1 111122222 2333
Q ss_pred ceEEecHHHHHHHHHHHHH----------------HHHHHHHHHHHHcCCCCCC--ccEEEEeCCCCChHHHHHHHHHHh
Q 003290 294 VRGFIKRDEFEQISAPILE----------------RVKRPLEKALAETGLSVED--VHMVEVVGSSSRVPAIIKILTEFF 355 (833)
Q Consensus 294 ~~~~itr~efe~l~~~~~~----------------~i~~~i~~~l~~~~~~~~~--i~~ViLvGG~sriP~v~~~l~~~f 355 (833)
.+.+..+.| .+.+.+|+ .+...|.+++..+...... ...|+|+||+|++|++.++|.+.+
T Consensus 257 -~i~~~~er~-~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL 334 (393)
T PF00022_consen 257 -TIILGKERF-RIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQEL 334 (393)
T ss_dssp -EEEESTHHH-HHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHH
T ss_pred -ccccccccc-cccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHh
Confidence 455555554 33444433 5777888888776533221 478999999999999999998877
Q ss_pred CC--------CCCCCC-CchhHHHhHHHHhchhh
Q 003290 356 GK--------EPRRTM-NASECVARGCALQCAIL 380 (833)
Q Consensus 356 g~--------~~~~~~-npdeava~Gaa~~aa~l 380 (833)
.. ++.... ++..++=+||+++|..-
T Consensus 335 ~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 335 RSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp HHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred hhhhhccccceeccCchhhhhcccccceeeeccc
Confidence 31 223334 78999999999998754
No 40
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.23 E-value=2.7e-10 Score=125.75 Aligned_cols=182 Identities=26% Similarity=0.347 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHcCCccEEeechhHHHHHHHhhhcCCCCCC-CCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCc
Q 003290 151 LQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPEN-DQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSV 229 (833)
Q Consensus 151 ~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~-~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~l 229 (833)
..-..+.++++.|||++..+--++.|.+-.|......++.. ....++++|+|+.++.++++ .+|.+.. .....+
T Consensus 136 ~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~--~~g~~~f---~R~i~~ 210 (340)
T PF11104_consen 136 EIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIF--QNGKPIF---SRSIPI 210 (340)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEE--ETTEEEE---EEEES-
T ss_pred HHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEE--ECCEEEE---EEEEee
Confidence 34566788899999998877666666554444322233321 34679999999999999995 4554422 224689
Q ss_pred ccHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCceeEEEeccccCccceEEecHHHHHHHHHH
Q 003290 230 GGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAP 309 (833)
Q Consensus 230 GG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~ 309 (833)
||.+|++.|++.+- ++. .+|+..|..-+... +...+.+.+
T Consensus 211 G~~~l~~~i~~~~~--------i~~-----------~~Ae~~k~~~~l~~---------------------~~~~~~l~~ 250 (340)
T PF11104_consen 211 GGNDLTEAIARELG--------IDF-----------EEAEELKRSGGLPE---------------------EYDQDALRP 250 (340)
T ss_dssp SHHHHHHHHHHHTT----------H-----------HHHHHHHHHT---------------------------HHHHHHH
T ss_pred CHHHHHHHHHHhcC--------CCH-----------HHHHHHHhcCCCCc---------------------chHHHHHHH
Confidence 99999999987642 221 55666665421100 223345566
Q ss_pred HHHHHHHHHHHHHHH--cCCCCCCccEEEEeCCCCChHHHHHHHHHHhCCCCC---------CCC----------CchhH
Q 003290 310 ILERVKRPLEKALAE--TGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPR---------RTM----------NASEC 368 (833)
Q Consensus 310 ~~~~i~~~i~~~l~~--~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~---------~~~----------npdea 368 (833)
+++++..-|.+.|+- +......|+.|+|+||++++|.+.+.|++.||.++. ... .|..+
T Consensus 251 ~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~a 330 (340)
T PF11104_consen 251 FLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDPKINSEYLQEDAPQFA 330 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--TTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccCcccChhhhhhhhhHHH
Confidence 666666666666653 223345799999999999999999999999985431 111 26678
Q ss_pred HHhHHHHhc
Q 003290 369 VARGCALQC 377 (833)
Q Consensus 369 va~Gaa~~a 377 (833)
+|.|.|+..
T Consensus 331 vA~GLAlR~ 339 (340)
T PF11104_consen 331 VALGLALRG 339 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhcC
Confidence 999998763
No 41
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.21 E-value=1.9e-09 Score=117.86 Aligned_cols=208 Identities=14% Similarity=0.150 Sum_probs=129.3
Q ss_pred CcCcEEEEecCccCHHHHHHHHHHHHHc---------CCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceE
Q 003290 136 AVVDCCIGIPVYFTDLQRRAVIDAATIA---------GLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASL 206 (833)
Q Consensus 136 ~~~~~VITVP~~f~~~qR~al~~Aa~~A---------Gl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~ 206 (833)
.+..+|+..|..+...||..+++...-. -+..+.++.+|.+|.+.|........ .....++|+|+|++|+
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~-~~~~~~lVIDIG~~Tt 179 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLL-TGKEQSLIIDPGYFTF 179 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcc-cCcCcEEEEecCCCee
Confidence 4567999999999999999998886531 33457889999999888765432111 1356789999999999
Q ss_pred EEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCceeEEEe
Q 003290 207 QVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIE 286 (833)
Q Consensus 207 dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~ie 286 (833)
|+.++ .++.+ +...++....|-.++-+.|.+.|.+++ +.+...+...+.. + |..... +.+
T Consensus 180 D~~~~--~~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~----g~~~~~~~~~i~~----~------l~~g~~--~~~- 239 (320)
T TIGR03739 180 DWLVA--RGMRL-VQKRSGSVNGGMSDIYRLLAAEISKDI----GTPAYRDIDRIDL----A------LRTGKQ--PRI- 239 (320)
T ss_pred eeehc--cCCEE-cccccCCchhHHHHHHHHHHHHHHhhc----CCCCccCHHHHHH----H------HHhCCc--eee-
Confidence 99776 34444 555566778998888888887776654 4431111111111 1 111100 000
Q ss_pred ccccCccceEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCC-CCCCCCCc
Q 003290 287 CLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGK-EPRRTMNA 365 (833)
Q Consensus 287 ~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~-~~~~~~np 365 (833)
.....| |+ +.++ .....++++..-|...+ + ...+++.|+|+||++. .+++.|++.|+. .+....||
T Consensus 240 -~gk~~d----i~-~~~~-~~~~~~~~~v~~i~~~~---~-~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp 306 (320)
T TIGR03739 240 -YQKPVD----IK-RCLE-LAETVAQQAVSTMMTWI---G-APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEP 306 (320)
T ss_pred -cceecC----ch-HHHH-HHHHHHHHHHHHHHHhc---c-cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCc
Confidence 001112 21 1122 22333333333333333 1 1246899999999987 568899999975 34456789
Q ss_pred hhHHHhHHHHhc
Q 003290 366 SECVARGCALQC 377 (833)
Q Consensus 366 deava~Gaa~~a 377 (833)
..|.|+|-..++
T Consensus 307 ~~ANarG~~~~g 318 (320)
T TIGR03739 307 MFANVRGFQIAG 318 (320)
T ss_pred HHHHHHHHHHhh
Confidence 999999987765
No 42
>PTZ00452 actin; Provisional
Probab=99.17 E-value=1.5e-09 Score=121.05 Aligned_cols=217 Identities=14% Similarity=0.127 Sum_probs=133.2
Q ss_pred cCcEEEEecCccCHHHHHHHHHHH-HHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeC
Q 003290 137 VVDCCIGIPVYFTDLQRRAVIDAA-TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKK 215 (833)
Q Consensus 137 ~~~~VITVP~~f~~~qR~al~~Aa-~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~ 215 (833)
-..++||-|.+.+..+|+.|.+.+ +..+.+.+.+.+.+.+++++++ ..+-||+|+|.|.+.++-|. +
T Consensus 100 ~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g----------~~tglVVDiG~~~t~v~PV~--d 167 (375)
T PTZ00452 100 DQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSG----------KTIGLVVDSGEGVTHCVPVF--E 167 (375)
T ss_pred cCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCC----------CceeeeecCCCCcceEEEEE--C
Confidence 457999999999999998887664 6778888888999888887654 24679999999999987653 3
Q ss_pred CeEEEEEeeCCCCcccHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCc------------eeE
Q 003290 216 GQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPE------------APL 283 (833)
Q Consensus 216 ~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~------------~~~ 283 (833)
|.. +.......++||.+++..|.+.|... +..+.... . +..++.+|+.+..... ...
T Consensus 168 G~~-l~~~~~r~~~gG~~lt~~L~~lL~~~-----~~~~~~~~-~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~ 236 (375)
T PTZ00452 168 GHQ-IPQAITKINLAGRLCTDYLTQILQEL-----GYSLTEPH-Q----RIIVKNIKERLCYTALDPQDEKRIYKESNSQ 236 (375)
T ss_pred CEE-eccceEEeeccchHHHHHHHHHHHhc-----CCCCCCHH-H----HHHHHHHHHHhccccCcHHHHHHHhhccCCc
Confidence 333 22222345799999999998887532 22222110 0 1224445555431110 000
Q ss_pred EEe-ccccCccceEEecHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCCC--CCCccEEEEeCCCCChHHHHHHHH
Q 003290 284 NIE-CLMEEKDVRGFIKRDEFE---QISAPIL-----ERVKRPLEKALAETGLS--VEDVHMVEVVGSSSRVPAIIKILT 352 (833)
Q Consensus 284 ~ie-~l~~~~d~~~~itr~efe---~l~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~sriP~v~~~l~ 352 (833)
... .|.++. .+.|..+.|. -+++|-+ ..|.+.|.+++..+... ..-...|+|+||+|.+|.+.++|.
T Consensus 237 ~~~y~LPDg~--~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~ 314 (375)
T PTZ00452 237 DSPYKLPDGN--ILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLS 314 (375)
T ss_pred CceEECCCCC--EEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHH
Confidence 001 122332 3456666551 2222321 23566777777665332 222479999999999999999998
Q ss_pred HHhCC------C--CCCCCCchhHHHhHHHHhch
Q 003290 353 EFFGK------E--PRRTMNASECVARGCALQCA 378 (833)
Q Consensus 353 ~~fg~------~--~~~~~npdeava~Gaa~~aa 378 (833)
..+.. + +..+.+...++=+|++++|.
T Consensus 315 ~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 315 NELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred HHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 87731 1 22233455566678877775
No 43
>PTZ00281 actin; Provisional
Probab=99.14 E-value=6.5e-10 Score=124.28 Aligned_cols=217 Identities=12% Similarity=0.133 Sum_probs=135.2
Q ss_pred cCcEEEEecCccCHHHHHHHHHH-HHHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeC
Q 003290 137 VVDCCIGIPVYFTDLQRRAVIDA-ATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKK 215 (833)
Q Consensus 137 ~~~~VITVP~~f~~~qR~al~~A-a~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~ 215 (833)
-..++||-|.++...+|+.|.+. .+..++.-+.+...+.+++++++ ..+-||+|+|++.|.++-|. +
T Consensus 101 ~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g----------~~tglVVDiG~~~t~v~PV~--d 168 (376)
T PTZ00281 101 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG----------RTTGIVMDSGDGVSHTVPIY--E 168 (376)
T ss_pred cCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcC----------CceEEEEECCCceEEEEEEE--e
Confidence 45788999999999999988774 57789998899999999887654 24679999999999977542 2
Q ss_pred CeEEEEEeeCCCCcccHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCC------------ceeE
Q 003290 216 GQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANP------------EAPL 283 (833)
Q Consensus 216 ~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~------------~~~~ 283 (833)
|.. +.......++||.++++.|.+.|... +..+.. . .- +..++.+|+.+.-.. ....
T Consensus 169 G~~-~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~-~-~~---~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~ 237 (376)
T PTZ00281 169 GYA-LPHAILRLDLAGRDLTDYMMKILTER-----GYSFTT-T-AE---REIVRDIKEKLAYVALDFEAEMQTAASSSAL 237 (376)
T ss_pred ccc-chhheeeccCcHHHHHHHHHHHHHhc-----CCCCCc-H-HH---HHHHHHHHHhcEEecCCchHHHHhhhcCccc
Confidence 222 33333346899999999999887542 112211 0 00 133555666543111 0011
Q ss_pred EEec-cccCccceEEecHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCCC--CCccEEEEeCCCCChHHHHHHHH
Q 003290 284 NIEC-LMEEKDVRGFIKRDEF---EQISAPIL-----ERVKRPLEKALAETGLSV--EDVHMVEVVGSSSRVPAIIKILT 352 (833)
Q Consensus 284 ~ie~-l~~~~d~~~~itr~ef---e~l~~~~~-----~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~sriP~v~~~l~ 352 (833)
.... |.++. .+.|..+.| |-+++|-+ ..|.+.|.+++..+.... .-.+.|+|+||+|.+|.+.++|.
T Consensus 238 ~~~y~LPdg~--~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~ 315 (376)
T PTZ00281 238 EKSYELPDGQ--VITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMN 315 (376)
T ss_pred ceeEECCCCC--EEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHH
Confidence 1111 22232 344555444 22333321 145667777776653321 12468999999999999999998
Q ss_pred HHhCC--------CCCCCCCchhHHHhHHHHhch
Q 003290 353 EFFGK--------EPRRTMNASECVARGCALQCA 378 (833)
Q Consensus 353 ~~fg~--------~~~~~~npdeava~Gaa~~aa 378 (833)
..+.. ++..+.++..++=+|++++|.
T Consensus 316 ~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 316 KELTALAPSTMKIKIIAPPERKYSVWIGGSILAS 349 (376)
T ss_pred HHHHHhCCCCcceEEecCCCCceeEEECcccccC
Confidence 87731 123334566777788888775
No 44
>PTZ00004 actin-2; Provisional
Probab=99.13 E-value=1.4e-09 Score=121.74 Aligned_cols=217 Identities=10% Similarity=0.083 Sum_probs=134.6
Q ss_pred cCcEEEEecCccCHHHHHHHHHH-HHHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeC
Q 003290 137 VVDCCIGIPVYFTDLQRRAVIDA-ATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKK 215 (833)
Q Consensus 137 ~~~~VITVP~~f~~~qR~al~~A-a~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~ 215 (833)
-..+++|-|.++...+|+.+.+. .+..|++.+.++.++.+++++++ ..+-||+|+|++.|+++-+. +
T Consensus 101 ~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g----------~~tglVVDiG~~~t~v~pV~--d 168 (378)
T PTZ00004 101 EHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASG----------RTTGIVLDSGDGVSHTVPIY--E 168 (378)
T ss_pred cCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcC----------CceEEEEECCCCcEEEEEEE--C
Confidence 45688999999999999877665 47789999999999999887654 24669999999999987753 3
Q ss_pred CeEEEEEeeCCCCcccHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCC------------c-ee
Q 003290 216 GQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANP------------E-AP 282 (833)
Q Consensus 216 ~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~------------~-~~ 282 (833)
|.. +.......++||++++..|.+.|... +..+.. .. -...++.+|+.+.... . ..
T Consensus 169 G~~-l~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~--~~---~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~ 237 (378)
T PTZ00004 169 GYS-LPHAIHRLDVAGRDLTEYMMKILHER-----GTTFTT--TA---EKEIVRDIKEKLCYIALDFDEEMGNSAGSSDK 237 (378)
T ss_pred CEE-eecceeeecccHHHHHHHHHHHHHhc-----CCCCCc--HH---HHHHHHHHhhcceeecCCHHHHHhhhhcCccc
Confidence 333 22333346899999999999987542 111111 11 1123445555442110 0 00
Q ss_pred EEEec-cccCccceEEecHHHHH---HHHHHH------HHHHHHHHHHHHHHcCCCC--CCccEEEEeCCCCChHHHHHH
Q 003290 283 LNIEC-LMEEKDVRGFIKRDEFE---QISAPI------LERVKRPLEKALAETGLSV--EDVHMVEVVGSSSRVPAIIKI 350 (833)
Q Consensus 283 ~~ie~-l~~~~d~~~~itr~efe---~l~~~~------~~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~sriP~v~~~ 350 (833)
..... |.++. .+.|..+.|. -++.|- ...|.+.|.+++..+.... .-...|+|+||+|.+|.+.++
T Consensus 238 ~~~~y~lPdg~--~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~R 315 (378)
T PTZ00004 238 YEESYELPDGT--IITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPER 315 (378)
T ss_pred cceEEECCCCC--EEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHH
Confidence 01111 22333 2345554442 233332 2345667777777654321 124789999999999999999
Q ss_pred HHHHhCC--------CCCCCCCchhHHHhHHHHhch
Q 003290 351 LTEFFGK--------EPRRTMNASECVARGCALQCA 378 (833)
Q Consensus 351 l~~~fg~--------~~~~~~npdeava~Gaa~~aa 378 (833)
|...+.. .+....++..++=+||+++|.
T Consensus 316 L~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 316 LTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred HHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 9887731 122334566666778777765
No 45
>PTZ00466 actin-like protein; Provisional
Probab=99.08 E-value=4.5e-09 Score=117.44 Aligned_cols=216 Identities=9% Similarity=0.062 Sum_probs=133.8
Q ss_pred cCcEEEEecCccCHHHHHHHHHH-HHHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeC
Q 003290 137 VVDCCIGIPVYFTDLQRRAVIDA-ATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKK 215 (833)
Q Consensus 137 ~~~~VITVP~~f~~~qR~al~~A-a~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~ 215 (833)
-..+++|-|+++...+|+.|.+. .+..|++-+.+.+.+.+++++++ ..+-+|+|+|.+.|.++-+. +
T Consensus 106 ~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g----------~~tglVVD~G~~~t~v~PV~--~ 173 (380)
T PTZ00466 106 EHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCG----------KTNGTVLDCGDGVCHCVSIY--E 173 (380)
T ss_pred cCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcC----------CceEEEEeCCCCceEEEEEE--C
Confidence 45688999999999999987665 47778888889999988887664 24679999999999987643 3
Q ss_pred CeEEEEEeeCCCCcccHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCC-----------ceeEE
Q 003290 216 GQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANP-----------EAPLN 284 (833)
Q Consensus 216 ~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~-----------~~~~~ 284 (833)
|.. +.......++||++++..|.+.|... +..... . .-+..++.+|+.+.... .....
T Consensus 174 G~~-~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~--~---~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~ 242 (380)
T PTZ00466 174 GYS-ITNTITRTDVAGRDITTYLGYLLRKN-----GHLFNT--S---AEMEVVKNMKENCCYVSFNMNKEKNSSEKALTT 242 (380)
T ss_pred CEE-eecceeEecCchhHHHHHHHHHHHhc-----CCCCCc--H---HHHHHHHHHHHhCeEecCChHHHHhhccccccc
Confidence 333 22233346899999999999887532 111111 0 11233445555542110 00001
Q ss_pred Eec-cccCccceEEecHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCCC--CCccEEEEeCCCCChHHHHHHHH
Q 003290 285 IEC-LMEEKDVRGFIKRDEFEQISAPILE---------RVKRPLEKALAETGLSV--EDVHMVEVVGSSSRVPAIIKILT 352 (833)
Q Consensus 285 ie~-l~~~~d~~~~itr~efe~l~~~~~~---------~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~sriP~v~~~l~ 352 (833)
... |.++. .+.|..+.|. +.+.+|+ .+.+.|.+++..+..+. .-...|+|+||+|.+|.+.++|.
T Consensus 243 ~~y~LPdg~--~i~l~~er~~-~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~ 319 (380)
T PTZ00466 243 LPYILPDGS--QILIGSERYR-APEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLL 319 (380)
T ss_pred eeEECCCCc--EEEEchHHhc-CcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHH
Confidence 111 22332 3445655552 2333332 45666777776654321 12478999999999999999998
Q ss_pred HHhCC--------CCCCCCCchhHHHhHHHHhch
Q 003290 353 EFFGK--------EPRRTMNASECVARGCALQCA 378 (833)
Q Consensus 353 ~~fg~--------~~~~~~npdeava~Gaa~~aa 378 (833)
..+.. .+....++..++=+|++++|.
T Consensus 320 ~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 320 NEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred HHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 88731 122333555566678877775
No 46
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.99 E-value=3.1e-07 Score=95.82 Aligned_cols=162 Identities=21% Similarity=0.298 Sum_probs=108.5
Q ss_pred HHHHHHHHHHcCCccEEeechhHHHHHHHhhhcCCC-CCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCccc
Q 003290 153 RRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDL-PENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGG 231 (833)
Q Consensus 153 R~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~-~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG 231 (833)
-....+|++.|||...-+--+..|.--+|...-..+ +......|+|+|+|+.++.++++.-.. ++.+ .+..+||
T Consensus 151 v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk----~ly~-r~~~~g~ 225 (354)
T COG4972 151 VESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGK----ILYT-REVPVGT 225 (354)
T ss_pred hHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCe----eeeE-eeccCcH
Confidence 355678999999998877777777766665221122 222234589999999999999975442 3333 3789999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCceeEEEeccccCccceEEecHHHHHHHHHHHH
Q 003290 232 RDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPIL 311 (833)
Q Consensus 232 ~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~ 311 (833)
+++++.|.+. |+++. ..++.+|....--. +--.++..+++
T Consensus 226 ~Qlt~~i~r~--------~~L~~-----------~~a~~~k~~~~~P~---------------------~y~~~vl~~f~ 265 (354)
T COG4972 226 DQLTQEIQRA--------YSLTE-----------EKAEEIKRGGTLPT---------------------DYGSEVLRPFL 265 (354)
T ss_pred HHHHHHHHHH--------hCCCh-----------hHhHHHHhCCCCCC---------------------chhHHHHHHHH
Confidence 9999998754 34443 44566665443211 11234455566
Q ss_pred HHHHHHHHHHHHH--cCCCCCCccEEEEeCCCCChHHHHHHHHHHhCCCC
Q 003290 312 ERVKRPLEKALAE--TGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEP 359 (833)
Q Consensus 312 ~~i~~~i~~~l~~--~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~ 359 (833)
+.+..-|.+.|+- +.-...+|++|+|.||+.++-.+.+.|.+.++.+.
T Consensus 266 ~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~~~t 315 (354)
T COG4972 266 GELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLSIPT 315 (354)
T ss_pred HHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhCCCe
Confidence 6655556555554 22244589999999999999999999999998543
No 47
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.91 E-value=2e-08 Score=109.61 Aligned_cols=172 Identities=16% Similarity=0.229 Sum_probs=97.2
Q ss_pred ccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHHHHHHHH
Q 003290 166 HPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAK 245 (833)
Q Consensus 166 ~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~ 245 (833)
..+.++.|+.||.+.+... +. ....+||+|+||+|+|++++. ++.-.+-...+...+|-..+-..|.+.|...
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~---~~--~~~~~lVVDIGG~T~Dv~~v~--~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~ 213 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMD---LD--EDESVLVVDIGGRTTDVAVVR--GGLPDISKCSGTPEIGVSDLYDAIAQALRSA 213 (318)
T ss_dssp EEEEEEESSHHHHHHHHHT---S---TTSEEEEEEE-SS-EEEEEEE--GGG--EEEEEEETTSSTHHHHHHHHHHTT--
T ss_pred eeEEEEcccHHHHHHHHHh---hc--ccCcEEEEEcCCCeEEeeeec--CCccccchhccCCchhHHHHHHHHHHHHHHh
Confidence 4678899999999887654 21 246799999999999999875 2222233444567899988888887776541
Q ss_pred HHhhhccCccCCHHHHHHHHHHHHHH-hhhcCCCCceeEEEeccccCccceEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003290 246 FKEEYKIDVSQNARASLRLRVACEKL-KKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALAE 324 (833)
Q Consensus 246 ~~~k~~~~~~~~~~~~~rL~~~aek~-K~~LS~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~ 324 (833)
+...+. ..++.+ +... ....+ .....+. -.++++.++++..++++..-|.+.+.
T Consensus 214 -----~~~~s~---------~~~~~ii~~~~---~~~~~--~~~i~~~-----~~~~~v~~~i~~~~~~l~~~i~~~~~- 268 (318)
T PF06406_consen 214 -----GIDTSE---------LQIDDIIRNRK---DKGYL--RQVINDE-----DVIDDVSEVIEEAVEELINRILRELG- 268 (318)
T ss_dssp -----SBHHHH---------HHHHHHHHTTT----HHHH--HHHSSSH-----HHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred -----cCCCcH---------HHHHHHHHhhh---cccee--cccccch-----hhHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 111110 011111 1000 00000 0000010 01334444555555555554444443
Q ss_pred cCCCCCCccEEEEeCCCCChHHHHHHHHHHhC---CCCCCCCCchhHHHhHHH
Q 003290 325 TGLSVEDVHMVEVVGSSSRVPAIIKILTEFFG---KEPRRTMNASECVARGCA 374 (833)
Q Consensus 325 ~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg---~~~~~~~npdeava~Gaa 374 (833)
...+++.|+|+||++ ..+.+.|++.|+ ..+...-||..|.|+|-+
T Consensus 269 ---~~~~~~~I~~vGGGA--~ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 269 ---DFSDIDRIFFVGGGA--ILLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp ---TS-S-SEEEEESTTH--HHHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred ---hhccCCeEEEECCcH--HHHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 235789999999997 567899999987 356677899999999964
No 48
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.83 E-value=1.3e-07 Score=99.75 Aligned_cols=170 Identities=18% Similarity=0.212 Sum_probs=106.8
Q ss_pred EeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHHHHHHHHHHh
Q 003290 169 RLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKE 248 (833)
Q Consensus 169 ~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~ 248 (833)
..++|.+|-+.+..+.. | ..=.|+|+||..+-+.+++ +|.+.-......+..|+..|.+.+++.|
T Consensus 73 ~~~~ei~~~~~g~~~~~---~----~~~~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l------ 137 (248)
T TIGR00241 73 KIVTEISCHGKGANYLA---P----EARGVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRL------ 137 (248)
T ss_pred CceEEhhHHHHHHHHHC---C----CCCEEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHc------
Confidence 36788888776543322 2 2235999999988877766 5655433455567888888888887654
Q ss_pred hhccCccCCHHHHHHHHHHHHHHhhh----cCCCCceeEEEec-cccCccceEEecHHHHHHHHHHHHHHHHHHHHHHHH
Q 003290 249 EYKIDVSQNARASLRLRVACEKLKKV----LSANPEAPLNIEC-LMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALA 323 (833)
Q Consensus 249 k~~~~~~~~~~~~~rL~~~aek~K~~----LS~~~~~~~~ie~-l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~ 323 (833)
++++ ++++.++.. ..-+....+..+. +... +..-.++ ++++..+++.+...+.+.+.
T Consensus 138 --~~~~-----------~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~--l~~g~~~---~di~~~~~~~va~~i~~~~~ 199 (248)
T TIGR00241 138 --GVSV-----------EELGSLAEKADRKAKISSMCTVFAESELISL--LAAGVKK---EDILAGVYESIAERVAEMLQ 199 (248)
T ss_pred --CCCH-----------HHHHHHHhcCCCCCCcCCEeEEEechhHHHH--HHCCCCH---HHHHHHHHHHHHHHHHHHHh
Confidence 3332 233333222 1111111222110 1000 0011222 45666677777666666665
Q ss_pred HcCCCCCCcc-EEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHh
Q 003290 324 ETGLSVEDVH-MVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQ 376 (833)
Q Consensus 324 ~~~~~~~~i~-~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~ 376 (833)
..+ ++ .|+|+||.++.|.+.+.+.+.++.++..+.+|..+.|+|||++
T Consensus 200 ~~~-----~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 200 RLK-----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred hcC-----CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHhC
Confidence 433 44 7999999999999999999999999989999999999999973
No 49
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=98.80 E-value=4.4e-07 Score=95.93 Aligned_cols=116 Identities=18% Similarity=0.175 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHHHHHH-HHHcCCccEEeechhHHHHHHHhhhcCCCCCCCCc
Q 003290 116 QVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDA-ATIAGLHPLRLFHETTATALAYGIYKTDLPENDQL 194 (833)
Q Consensus 116 el~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~~A-a~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~ 194 (833)
++..++++|..+.- -.....-.-++||-|++=+...|+.+... .+...++...|.-+++++|++-| ..
T Consensus 86 D~~~~~w~~~~~~~-Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G----------rs 154 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQ-LKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANG----------RS 154 (426)
T ss_pred HHHHHHHHHHHhhh-hhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcC----------CC
Confidence 46667777766421 12222345689999999999999877665 57777888888888888887643 34
Q ss_pred eEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHHHHHHHH
Q 003290 195 NVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAK 245 (833)
Q Consensus 195 ~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~ 245 (833)
+.||+|+|++++.|+-+ .+|.+--.+.. -.+|||+.++..+.++|..+
T Consensus 155 talVvDiGa~~~svsPV--~DG~Vlqk~vv-ks~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 155 TALVVDIGATHTSVSPV--HDGYVLQKGVV-KSPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred ceEEEEecCCCceeeee--ecceEeeeeeE-ecccchHHHHHHHHHHHhhc
Confidence 68999999999998874 34444334443 46899999999999998876
No 50
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=98.57 E-value=1.6e-06 Score=97.75 Aligned_cols=98 Identities=16% Similarity=0.158 Sum_probs=69.0
Q ss_pred cCcEEEEecCccCHHHHHHHHHH-HHHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeC
Q 003290 137 VVDCCIGIPVYFTDLQRRAVIDA-ATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKK 215 (833)
Q Consensus 137 ~~~~VITVP~~f~~~qR~al~~A-a~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~ 215 (833)
-..+++|-|..+...+|..+... ++...++.+.+...+.+++++.+ .. ..+.+|+|+|.+.|+++=|- +
T Consensus 106 ~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g--~~------~~~g~ViD~G~~~t~v~PV~--D 175 (444)
T COG5277 106 EHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASG--SS------DETGLVIDSGDSVTHVIPVV--D 175 (444)
T ss_pred CCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcC--CC------CCceEEEEcCCCceeeEeee--c
Confidence 44799999999999998877665 46666666666666555554433 21 14789999999999987653 2
Q ss_pred CeEEEEEeeCCCCcccHHHHHHHHHHHHHH
Q 003290 216 GQLKILGHSFDRSVGGRDFDEVLFQHFAAK 245 (833)
Q Consensus 216 ~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~ 245 (833)
|.. +.....-..+||++++..|.+.|...
T Consensus 176 G~~-l~~a~~ri~~gG~~it~~l~~lL~~~ 204 (444)
T COG5277 176 GIV-LPKAVKRIDIGGRDITDYLKKLLREK 204 (444)
T ss_pred ccc-ccccceeeecCcHHHHHHHHHHHhhc
Confidence 221 22333346799999999999988874
No 51
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.56 E-value=2.6e-05 Score=82.36 Aligned_cols=70 Identities=16% Similarity=0.238 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCCCCC-CCCCchhHHHhHHHHhchh
Q 003290 306 ISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPR-RTMNASECVARGCALQCAI 379 (833)
Q Consensus 306 l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~-~~~npdeava~Gaa~~aa~ 379 (833)
++..++..+..-+...+.+.++. ..|+|+||.++.|.+++.+++.+|.++. .+.+|..+-|+|||++|.-
T Consensus 218 I~aGl~~sia~rv~~~~~~~~i~----~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 218 VIAAYCQAMAERVVSLLERIGVE----EGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred HHHHHHHHHHHHHHHHhcccCCC----CCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 34444444444444444433322 4589999999999999999999998776 5678999999999999853
No 52
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.43 E-value=7.2e-07 Score=98.72 Aligned_cols=163 Identities=13% Similarity=0.122 Sum_probs=91.5
Q ss_pred CcEEEEecCccCHHHHHHHHHHHH--------HcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEE
Q 003290 138 VDCCIGIPVYFTDLQRRAVIDAAT--------IAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVC 209 (833)
Q Consensus 138 ~~~VITVP~~f~~~qR~al~~Aa~--------~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvs 209 (833)
.-.+||.+...-.+-++.+..+.. .||+++-.++. |.|++.+... . + ....++++|+|||||+++
T Consensus 89 ~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLs-e-E----ke~gVa~IDIGgGTT~ia 161 (475)
T PRK10719 89 GAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLS-E-E----RNTRVLNIDIGGGTANYA 161 (475)
T ss_pred cEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhh-h-h----ccCceEEEEeCCCceEEE
Confidence 346788877655544444443221 26777766666 8887765442 2 1 467899999999999999
Q ss_pred EEEEeCCeEEEEEeeCCCCcccHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCceeEEEeccc
Q 003290 210 IAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLM 289 (833)
Q Consensus 210 vv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~ie~l~ 289 (833)
++. +|. ++.+. ..++||+.++.. -+ ..+. .-.| ...+|.+. +-..+
T Consensus 162 Vf~--~G~--l~~T~-~l~vGG~~IT~D-~~---------~~i~-yis~-~~~~l~~~---~~~~~-------------- 207 (475)
T PRK10719 162 LFD--AGK--VIDTA-CLNVGGRLIETD-SQ---------GRVT-YISP-PGQMILDE---LGLAI-------------- 207 (475)
T ss_pred EEE--CCE--EEEEE-EEecccceEEEC-CC---------CCEE-EECh-HHHHHHHH---cCCCc--------------
Confidence 954 443 33333 578999977543 10 0000 0011 11222111 11011
Q ss_pred cCccceEEecHHHHHHHHHHHHHHHHHHHHH-------HHHH-cCCC-CCCccEEEEeCCCCCh
Q 003290 290 EEKDVRGFIKRDEFEQISAPILERVKRPLEK-------ALAE-TGLS-VEDVHMVEVVGSSSRV 344 (833)
Q Consensus 290 ~~~d~~~~itr~efe~l~~~~~~~i~~~i~~-------~l~~-~~~~-~~~i~~ViLvGG~sri 344 (833)
..--.++.+++..+|+.+.+-+.+.+.. .|-. ..++ ...++.|.+.||-+..
T Consensus 208 ---~~G~~~~~~~L~~i~~~Ma~~l~~~i~~~~~~~~~~l~~~~~l~~~~~~~~i~fSGGVad~ 268 (475)
T PRK10719 208 ---TDGRSLTGEQLQQVTRRMAELLVEVIGGALSPLAQALMTTKLLPAGVPPEIITFSGGVGDC 268 (475)
T ss_pred ---cccccCCHHHHHHHHHHHHHHHHHHhCCCCChhHHhhccCCCCCCCCCCCEEEEecchHhh
Confidence 1112466788888888777666665541 1111 1222 3568999999998754
No 53
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.41 E-value=8.9e-05 Score=88.75 Aligned_cols=328 Identities=19% Similarity=0.259 Sum_probs=180.8
Q ss_pred EecHhhhhhhcc----CCCchHHHHHHhh--------CCCCCCHHHHHh----hccCCceeeeCCCCceEEEE-EEcC--
Q 003290 47 FIGTAGAASSTM----NPKNSISQIKRLI--------GRQFSDPELQRD----LKSLPFAVTEGPDGYPLIHA-RYLG-- 107 (833)
Q Consensus 47 ~~G~~A~~~~~~----~p~~~~~~~k~ll--------G~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~v-~~~~-- 107 (833)
-+|.+|..++.. .....+...||+| |.+|+....... ....|+...-++.|.+.+.+ ....
T Consensus 331 RVG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~~~q~WRFn~~~~~~~~eP~ata~p~~~liN~~G~~L~~l~~~~~r~ 410 (1002)
T PF07520_consen 331 RVGPEAARLASQRRGTEGSTGLSSPKRYLWDERPYEQGWRFNSAYVKSQNEPLATAAPFTNLINDDGQPLYQLDPEDERL 410 (1002)
T ss_pred eecHHHHHHHHHhcCCccccCCCCchhhccCCCccCCCcccCCCCCCCccCchhhhHHHHHhhcccCcchhhhcCccccC
Confidence 378888776653 2233466777777 233322111000 11122222223455554433 1111
Q ss_pred --ceeeeCHHHHHHHHHHHHHHHHHHhcCC--------------CcCcEEEEecCccCHHHHHHHHHHHHHc--------
Q 003290 108 --ETRVFTPTQVLGMLLSNLKAIAESNLNA--------------AVVDCCIGIPVYFTDLQRRAVIDAATIA-------- 163 (833)
Q Consensus 108 --~~~~~~~eel~a~~L~~l~~~ae~~~~~--------------~~~~~VITVP~~f~~~qR~al~~Aa~~A-------- 163 (833)
-.-.||=.-|+.++|..+.-.|--+.+. ....+++|||+--...+|+.+++.++-|
T Consensus 411 pvf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~l 490 (1002)
T PF07520_consen 411 PVFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKAL 490 (1002)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 1124555677777777776666444332 3568999999999999998888877654
Q ss_pred CCc---------------------cEEeechhHHHHHHHhhh------------------cCCCC------CCCCceEEE
Q 003290 164 GLH---------------------PLRLFHETTATALAYGIY------------------KTDLP------ENDQLNVAF 198 (833)
Q Consensus 164 Gl~---------------------~~~li~EptAaAl~y~~~------------------~~~~~------~~~~~~vlv 198 (833)
|+. +.-=-+|.||.=+-|... +.+.. ....-.|.-
T Consensus 491 Gw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriAS 570 (1002)
T PF07520_consen 491 GWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIAS 570 (1002)
T ss_pred CCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEE
Confidence 432 111124444443322211 11111 112346899
Q ss_pred EEeCCceEEEEEEEEe----CC-eEEEEEe---eCCCCcccHHHHHHHH-HHHHHHHHhhhcc-CccCCHHH--------
Q 003290 199 VDIGHASLQVCIAGFK----KG-QLKILGH---SFDRSVGGRDFDEVLF-QHFAAKFKEEYKI-DVSQNARA-------- 260 (833)
Q Consensus 199 ~D~Gggt~dvsvv~~~----~~-~~~vl~~---~~d~~lGG~~~D~~l~-~~l~~~~~~k~~~-~~~~~~~~-------- 260 (833)
+|+||||||+.|-.+. .| ...+.-. .-+..+.|.||=..++ .+++..+.+.... -+. ++++
T Consensus 571 IDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReGFkvAGDDiLldVI~~~VlPal~~aL~~aG~~-~~~~ll~~LfG~ 649 (1002)
T PF07520_consen 571 IDIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREGFKVAGDDILLDVIQRIVLPALQQALKKAGVA-DPRALLSRLFGG 649 (1002)
T ss_pred EecCCCcceeeEEEEEeccCCcceeEECcchhhhhhcccccHHHHHHHHHHHhHHHHHHHHHHhccc-CHHHHHHHHhCC
Confidence 9999999999998887 22 2222221 2235688888877755 4555555543210 011 0111
Q ss_pred ----------------------HHHHHHHHHHHhhhcCCCCceeEEEecc---------------------------ccC
Q 003290 261 ----------------------SLRLRVACEKLKKVLSANPEAPLNIECL---------------------------MEE 291 (833)
Q Consensus 261 ----------------------~~rL~~~aek~K~~LS~~~~~~~~ie~l---------------------------~~~ 291 (833)
..+++.++|..=..- ........+..+ ++=
T Consensus 650 dg~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~~-~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdi 728 (1002)
T PF07520_consen 650 DGQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPLD-PSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDI 728 (1002)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-cCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCcce
Confidence 123444444422100 000011111111 111
Q ss_pred ccceEEecHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCCCCC--------
Q 003290 292 KDVRGFIKRDEFEQISA---PILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPR-------- 360 (833)
Q Consensus 292 ~d~~~~itr~efe~l~~---~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~-------- 360 (833)
.|+.+.|....+...+. -.|..++..+-+++...+ -|.++|+|=-||+|.||.++++....++.
T Consensus 729 ldv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~-----CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y 803 (1002)
T PF07520_consen 729 LDVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHYD-----CDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGY 803 (1002)
T ss_pred ecceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHhC-----CCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCe
Confidence 34567899999888774 555566666666665543 47799999999999999999999864432
Q ss_pred ------------CCCCchhHHHhHHHHhchhhc
Q 003290 361 ------------RTMNASECVARGCALQCAILS 381 (833)
Q Consensus 361 ------------~~~npdeava~Gaa~~aa~ls 381 (833)
+--||...||+||.+++....
T Consensus 804 ~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 804 RTGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred eecccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 223899999999988765544
No 54
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.34 E-value=9.4e-05 Score=81.19 Aligned_cols=180 Identities=17% Similarity=0.104 Sum_probs=96.7
Q ss_pred EeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHHHHHHHHHHh
Q 003290 169 RLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKE 248 (833)
Q Consensus 169 ~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~ 248 (833)
..++|-+|-|....+.... .+..-.|+|+||- |.-++++.+|.+.-..-.+-+--|+-.|=+.+++.|
T Consensus 220 ~iv~EItaha~GA~~L~p~----~~~v~TIIDIGGQ--DsK~I~l~~G~v~dF~MNdkCAAGTGrFLE~~A~~L------ 287 (404)
T TIGR03286 220 LIQEELTVNSKGAVYLADK----QEGPATVIDIGGM--DNKAISVWDGIPDNFTMGGICAGASGRFLEMTAKRL------ 287 (404)
T ss_pred ceEEEEhhHHHHHHHhccc----CCCCcEEEEeCCC--ceEEEEEcCCceeeEEEcCcccccCcHHHHHHHHHh------
Confidence 3478888876543322111 1245689999995 555666666655433334334444434433343333
Q ss_pred hhccCccCCHHHHHHHHHHHHHHh-hhcCCCCceeEEEec-cccCccceEEecHHHHHHHHHHHHHHHHHHHH-HHHHHc
Q 003290 249 EYKIDVSQNARASLRLRVACEKLK-KVLSANPEAPLNIEC-LMEEKDVRGFIKRDEFEQISAPILERVKRPLE-KALAET 325 (833)
Q Consensus 249 k~~~~~~~~~~~~~rL~~~aek~K-~~LS~~~~~~~~ie~-l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~-~~l~~~ 325 (833)
++++. .|-..+.+.+ ....-+....+.-+. +.. -...-.++ ++++..+...+..-+. .+++..
T Consensus 288 --gi~ie-------El~~lA~~~~~~pv~IsS~CtVFaeSevIs--ll~~G~~~---eDIaAGl~~SIa~rv~~~l~~~~ 353 (404)
T TIGR03286 288 --GVDIT-------ELGKLALKGMPEKVRMNSYCIVFGIQDLVT--ALAEGASP---EDVAAAACHSVAEQVYEQQLQEI 353 (404)
T ss_pred --CCCHH-------HHHHHHHhCCCCCCCccCcccccccHhHHH--HHHCCCCH---HHHHHHHHHHHHHHHHHHHhhcC
Confidence 23321 1222232322 111111111111110 000 00011233 3344444444444443 234433
Q ss_pred CCCCCCccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhch
Q 003290 326 GLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCA 378 (833)
Q Consensus 326 ~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa 378 (833)
++. +.|+++||.++.+.+.+.+++.+|.++..+.+|..+-|+|||++|.
T Consensus 354 ~i~----~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 354 DVR----EPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CCC----CcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHhc
Confidence 322 4599999999999999999999999999999999999999999884
No 55
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.30 E-value=0.00028 Score=75.62 Aligned_cols=179 Identities=17% Similarity=0.212 Sum_probs=102.2
Q ss_pred EeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHHHHHHHHHHh
Q 003290 169 RLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKE 248 (833)
Q Consensus 169 ~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~ 248 (833)
..++|.+|-+.+..... | ..=.|+|+||- |.=++.+.+|.+.-..-..-+.-|.-.|=+.+++
T Consensus 211 ~~~~Ei~ah~kgA~~f~---p----~~dtIiDIGGQ--D~K~i~i~dG~v~df~mN~~CAAGtGrFLE~~A~-------- 273 (396)
T COG1924 211 KVVVEISAHAKGARYFA---P----DVDTVIDIGGQ--DSKVIKLEDGKVDDFTMNDKCAAGTGRFLEVIAR-------- 273 (396)
T ss_pred cceeeeehhHHHHHHhC---C----CCcEEEEecCc--ceeEEEEeCCeeeeeEeccccccccchHHHHHHH--------
Confidence 45667776655443221 1 12289999996 5555566677665444433333343333333332
Q ss_pred hhccCccCCHHHHHHHHHHHHHHhhhcCCCCceeEEEeccccCccceEEecHHHHHHHHHHHHHHHHHHHHH-HHHHcCC
Q 003290 249 EYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEK-ALAETGL 327 (833)
Q Consensus 249 k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~-~l~~~~~ 327 (833)
..++++.+ |-+.|.+.+.--.-++...+..++-. ++..=.-...|+++..+...+...+-. +++.-.+
T Consensus 274 ~Lgv~v~E-------~~~~A~~~~~~v~i~S~CaVF~eSev----i~~~~~G~~~EdI~AGl~~Sv~~~v~~~~~~~~~i 342 (396)
T COG1924 274 RLGVDVEE-------LGKLALKATPPVKINSRCAVFAESEV----ISALAEGASPEDILAGLAYSVAENVAEKVIKRVDI 342 (396)
T ss_pred HhCCCHHH-------HHHHHhcCCCCcccCCeeEEEehHHH----HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 23444322 33344444442222333332222100 000000112456666666666555544 5555433
Q ss_pred CCCCccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchh
Q 003290 328 SVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAI 379 (833)
Q Consensus 328 ~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ 379 (833)
. +. |+|+||.+....+.+++++.+|.++..+.+|...-|+|||++|..
T Consensus 343 ~--~~--iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 343 E--EP--IVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred C--CC--EEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHhh
Confidence 2 22 999999999999999999999999999999999999999999853
No 56
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.04 E-value=0.0022 Score=66.99 Aligned_cols=70 Identities=21% Similarity=0.150 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhC-CC----CCCCCCchhHHHhHHHHhc
Q 003290 305 QISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFG-KE----PRRTMNASECVARGCALQC 377 (833)
Q Consensus 305 ~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg-~~----~~~~~npdeava~Gaa~~a 377 (833)
+++..+.+.+..-+...+++.+.. -..|+|.||.++.+.+.+.|++.++ .. +..+.+|+.+-|+|||++|
T Consensus 188 dI~aGl~~sia~r~~~~~~~~~~~---~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 188 NILKGIHESMADRLAKLLKSLGAL---DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCC---CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 344444554444444444443211 1359999999999999999999984 23 4456688899999999875
No 57
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=97.66 E-value=0.001 Score=68.31 Aligned_cols=189 Identities=17% Similarity=0.172 Sum_probs=98.0
Q ss_pred HHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHHH
Q 003290 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (833)
Q Consensus 161 ~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~ 240 (833)
+..|.++.-.=.|+.+|.+....... .+..+.++||||||||++++.-.+ . |.+.+ ..-.|+-++..|..
T Consensus 106 ~~lgv~V~igGvEAemAi~GALTTPG-----t~~PlaIlDmG~GSTDAsii~~~g-~--v~~iH--lAGAG~mVTmlI~s 175 (332)
T PF08841_consen 106 EELGVPVEIGGVEAEMAILGALTTPG-----TDKPLAILDMGGGSTDASIINRDG-E--VTAIH--LAGAGNMVTMLINS 175 (332)
T ss_dssp HHHTSEEEEECEHHHHHHHHHTTSTT-------SSEEEEEE-SSEEEEEEE-TTS----EEEEE--EE-SHHHHHHHHHH
T ss_pred HHHCCceEEccccHHHHHhcccCCCC-----CCCCeEEEecCCCcccHHHhCCCC-c--EEEEE--ecCCchhhHHHHHH
Confidence 45688887777899998887653321 256799999999999999987655 2 33332 12236666665543
Q ss_pred HHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCceeEEEe---------------------ccccC---ccceE
Q 003290 241 HFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIE---------------------CLMEE---KDVRG 296 (833)
Q Consensus 241 ~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~ie---------------------~l~~~---~d~~~ 296 (833)
. .+++- +.-||.+|+---+.-+..++|. ++..+ ..+..
T Consensus 176 E--------LGl~d----------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~ 237 (332)
T PF08841_consen 176 E--------LGLED----------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPG 237 (332)
T ss_dssp H--------CT-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESS
T ss_pred h--------hCCCC----------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCC
Confidence 2 23321 1456667653211111111110 00000 01111
Q ss_pred EecHHHHHHHHHHHHHH-HHHHHHHHHHHc--CCCCCCccEEEEeCCCCChHHHHHHHHHHhC--------CCCCCCCCc
Q 003290 297 FIKRDEFEQISAPILER-VKRPLEKALAET--GLSVEDVHMVEVVGSSSRVPAIIKILTEFFG--------KEPRRTMNA 365 (833)
Q Consensus 297 ~itr~efe~l~~~~~~~-i~~~i~~~l~~~--~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg--------~~~~~~~np 365 (833)
.++-+.+..+=...=++ +....-++|+.. .-+..+|+.|+|||||+.=.-|-++|.+.+. -++.-.--|
T Consensus 238 ~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGP 317 (332)
T PF08841_consen 238 DLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGP 317 (332)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTT
T ss_pred CccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCc
Confidence 22333333222221111 222334455442 3345789999999999986667777777663 244555679
Q ss_pred hhHHHhHHHHhc
Q 003290 366 SECVARGCALQC 377 (833)
Q Consensus 366 deava~Gaa~~a 377 (833)
..|||.|.++..
T Consensus 318 RNAVATGLvlsy 329 (332)
T PF08841_consen 318 RNAVATGLVLSY 329 (332)
T ss_dssp STHHHHHHHHHH
T ss_pred hHHHHHHHHHhh
Confidence 999999998753
No 58
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.64 E-value=0.01 Score=67.28 Aligned_cols=50 Identities=20% Similarity=0.287 Sum_probs=39.4
Q ss_pred CccEEEEeCCCCChHHHHHHHHHHhCCCC--------------------CCCCCchhHHHhHHHHhchhh
Q 003290 331 DVHMVEVVGSSSRVPAIIKILTEFFGKEP--------------------RRTMNASECVARGCALQCAIL 380 (833)
Q Consensus 331 ~i~~ViLvGG~sriP~v~~~l~~~fg~~~--------------------~~~~npdeava~Gaa~~aa~l 380 (833)
+-|-++|+|--||+|.||.+++.....++ .+-.||...+|.||.+++..+
T Consensus 778 ~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg~WYPF~k~grIddPKtTAaVGAMLC~Lsl 847 (1014)
T COG4457 778 DCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVGTWYPFRKQGRIDDPKTTAAVGAMLCALSL 847 (1014)
T ss_pred cccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceeccceecccccCcCCCcchHHHHHHHHHHHHh
Confidence 45779999999999999999998775433 222389999999998877554
No 59
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=97.59 E-value=0.0017 Score=71.10 Aligned_cols=191 Identities=14% Similarity=0.171 Sum_probs=101.1
Q ss_pred CcEEEEecCccCHHHHHHHHHHH-HHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEE-EEEEEeC
Q 003290 138 VDCCIGIPVYFTDLQRRAVIDAA-TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQV-CIAGFKK 215 (833)
Q Consensus 138 ~~~VITVP~~f~~~qR~al~~Aa-~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dv-svv~~~~ 215 (833)
..+++|-|+.+...-|+.|.+.. +..+.+-+ .-.. .|.+ |+..+ .+-+|+|+|.|-+.+ -++.
T Consensus 100 ~pvllte~pl~p~~nREk~tqi~FE~fnvpa~--yva~-qavl-ya~g~--------ttG~VvD~G~gvt~~vPI~e--- 164 (372)
T KOG0676|consen 100 HPVLLTEPPLNPKANREKLTQIMFETFNVPAL--YVAI-QAVL-YASGR--------TTGLVVDSGDGVTHVVPIYE--- 164 (372)
T ss_pred CceEeecCCCCchHhHHHHHHHhhhhcCccHh--HHHH-HHHH-HHcCC--------eeEEEEEcCCCceeeeeccc---
Confidence 57999999999999998887653 44444433 3222 3333 55432 457999999997753 3432
Q ss_pred CeEEEEEeeCCCCcccHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCC------------CceeE
Q 003290 216 GQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSAN------------PEAPL 283 (833)
Q Consensus 216 ~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~------------~~~~~ 283 (833)
| +.+...-....+||++++..|...|.+ .+....... -+..++.+|+.++.. ....+
T Consensus 165 G-~~lp~ai~~ldl~G~dlt~~l~~~L~~-----~g~s~~~~~-----~~eIv~diKeklCyvald~~~e~~~~~~~~~l 233 (372)
T KOG0676|consen 165 G-YALPHAILRLDLAGRDLTDYLLKQLRK-----RGYSFTTSA-----EFEIVRDIKEKLCYVALDFEEEEETANTSSSL 233 (372)
T ss_pred c-cccchhhheecccchhhHHHHHHHHHh-----ccccccccc-----HHHHHHHhHhhhcccccccchhhhcccccccc
Confidence 2 223333445779999999977777765 122222111 012233444444211 11111
Q ss_pred EEec-cccCccceEEecHHHHH---HHHHHH-----HHHHHHHHHHHHHHc--CCCCCCccEEEEeCCCCChHHHHHHHH
Q 003290 284 NIEC-LMEEKDVRGFIKRDEFE---QISAPI-----LERVKRPLEKALAET--GLSVEDVHMVEVVGSSSRVPAIIKILT 352 (833)
Q Consensus 284 ~ie~-l~~~~d~~~~itr~efe---~l~~~~-----~~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~sriP~v~~~l~ 352 (833)
.... +.++ .. +.+.-+.|. -+++|- ...|...+-..+-++ ++...-...|+|+||++-+|++.+++.
T Consensus 234 ~~~y~lPDg-~~-i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~ 311 (372)
T KOG0676|consen 234 ESSYELPDG-QK-ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQ 311 (372)
T ss_pred cccccCCCC-CE-EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHH
Confidence 1111 2222 22 333332221 122211 122333333333333 223333578999999999999999888
Q ss_pred HHhC
Q 003290 353 EFFG 356 (833)
Q Consensus 353 ~~fg 356 (833)
+.+.
T Consensus 312 kEl~ 315 (372)
T KOG0676|consen 312 KELQ 315 (372)
T ss_pred HHHh
Confidence 7663
No 60
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=97.24 E-value=0.0091 Score=65.18 Aligned_cols=178 Identities=12% Similarity=0.075 Sum_probs=96.4
Q ss_pred EeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEe-CCeEEEEEeeCCCCcccHHHHHHHHHHHHHHHH
Q 003290 169 RLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFK-KGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFK 247 (833)
Q Consensus 169 ~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~-~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~ 247 (833)
.+++|.+|-|....+.. |..=.|+|+||--+- ++++. +|.+.-..-..-+.-|.-.|=+.+++.
T Consensus 249 ~vitEItcHA~GA~~l~-------P~vrTIIDIGGQDsK--~I~ld~~G~V~dF~MNDKCAAGTGrFLE~mA~~------ 313 (432)
T TIGR02259 249 HIRSEILCHGLGAHLMY-------PGTRTVLDIGGQDTK--GIQIDDHGIVENFQMNDRCAAGCGRYLGYIADE------ 313 (432)
T ss_pred ceeeeHHHHHHHHHHHC-------CCCCEEEEeCCCceE--EEEEcCCCcEeeeeecCcccccchHHHHHHHHH------
Confidence 35688888776543322 334479999997555 55665 354432233323344433443333332
Q ss_pred hhhccCccCCHHHHHHHHHHHHHHhhhcCCCCceeEEEeccccCccceEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 003290 248 EEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALAETGL 327 (833)
Q Consensus 248 ~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~ 327 (833)
.++++.+ |-..+.+.+....-++...+.-++-.-. -+.--++|+ +++..+...+..-+...+.+.+
T Consensus 314 --Lgi~leE-------l~~lA~~a~~pv~ISS~CtVFAESEVIs-lla~G~~re---DIaAGL~~SIA~Rv~s~l~r~~- 379 (432)
T TIGR02259 314 --MNMGLHE-------LGPLAMKSSKPARINSTCTVFAGAELRD-RLALGDKRE---DILAGLHRAIILRAISIISRSG- 379 (432)
T ss_pred --cCCCHHH-------HHHHHhcCCCCCCcCCcceEEehHHHHH-HHHCCCCHH---HHHHHHHHHHHHHHHHHHhccc-
Confidence 2333321 2222334443333333333332210000 001113333 3344455444444444444331
Q ss_pred CCCCccEEEEeCCCCChHHHHHHHHHHhC-----CCCCCCCCchhHHHhHHHHhc
Q 003290 328 SVEDVHMVEVVGSSSRVPAIIKILTEFFG-----KEPRRTMNASECVARGCALQC 377 (833)
Q Consensus 328 ~~~~i~~ViLvGG~sriP~v~~~l~~~fg-----~~~~~~~npdeava~Gaa~~a 377 (833)
.--..|+|+||.++.+.+.+.|++.++ .++..+.+|..+-|+|||++|
T Consensus 380 --~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 380 --GITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred --CCCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 112469999999999999999999994 557788899999999999975
No 61
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=97.04 E-value=0.0048 Score=68.14 Aligned_cols=122 Identities=13% Similarity=0.164 Sum_probs=86.5
Q ss_pred eeeCHHHHHHHHHHHHHHHHHHhcCCCcC-----cEEEEecCccCHHHHHHHHHH-HHHcCCccEEeechhHHHHHHHhh
Q 003290 110 RVFTPTQVLGMLLSNLKAIAESNLNAAVV-----DCCIGIPVYFTDLQRRAVIDA-ATIAGLHPLRLFHETTATALAYGI 183 (833)
Q Consensus 110 ~~~~~eel~a~~L~~l~~~ae~~~~~~~~-----~~VITVP~~f~~~qR~al~~A-a~~AGl~~~~li~EptAaAl~y~~ 183 (833)
..+|..++++.+-+-+.-...+.++.+.+ .+|+.||-.|.....+.++.. ....||+-..++-|+.|+.+..|+
T Consensus 195 ~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGl 274 (618)
T KOG0797|consen 195 PYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGL 274 (618)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCc
Confidence 45677777666555444444555555443 689999999998776655554 567899999999999999866654
Q ss_pred hcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHHHHHHH
Q 003290 184 YKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAA 244 (833)
Q Consensus 184 ~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~ 244 (833)
. .-.|+|+|+-+|.++.|+-. . .+..+.--...||.||++.|+-++..
T Consensus 275 s----------s~CVVdiGAQkTsIaCVEdG--v-s~~ntri~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 275 S----------SACVVDIGAQKTSIACVEDG--V-SLPNTRIILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred c----------ceeEEEccCcceeEEEeecC--c-cccCceEEeccCCchHHHHHHHHHHh
Confidence 2 45899999999998887533 2 12222223568999999999877654
No 62
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=96.88 E-value=0.0078 Score=67.30 Aligned_cols=88 Identities=17% Similarity=0.175 Sum_probs=52.0
Q ss_pred EEEEecCccCHHHHHHHHHHHHHcCCccEEee---chhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCC
Q 003290 140 CCIGIPVYFTDLQRRAVIDAATIAGLHPLRLF---HETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKG 216 (833)
Q Consensus 140 ~VITVP~~f~~~qR~al~~Aa~~AGl~~~~li---~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~ 216 (833)
++||==+--..+.|..+..-+..||==|+.-- -|+.=|+-..|.. .+.......|+=+|+||||+.+++++-.
T Consensus 88 VIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~--~~S~~~~~~V~NiDIGGGTtN~avf~~G-- 163 (473)
T PF06277_consen 88 VIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAA--ALSKEHHTVVANIDIGGGTTNIAVFDNG-- 163 (473)
T ss_pred EEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHH--HHhhhhCCeEEEEEeCCCceeEEEEECC--
Confidence 55665555556677777777777774333211 2333332222111 1111236789999999999999996544
Q ss_pred eEEEEEeeCCCCcccHHH
Q 003290 217 QLKILGHSFDRSVGGRDF 234 (833)
Q Consensus 217 ~~~vl~~~~d~~lGG~~~ 234 (833)
++++++ -.++|||-|
T Consensus 164 --~v~~T~-cl~IGGRLi 178 (473)
T PF06277_consen 164 --EVIDTA-CLDIGGRLI 178 (473)
T ss_pred --EEEEEE-EEeeccEEE
Confidence 356665 368999854
No 63
>PRK13317 pantothenate kinase; Provisional
Probab=96.71 E-value=0.047 Score=58.20 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=42.2
Q ss_pred CccEEEEeC-CCCChHHHHHHHHHHh---CCCCCCCCCchhHHHhHHHHhch
Q 003290 331 DVHMVEVVG-SSSRVPAIIKILTEFF---GKEPRRTMNASECVARGCALQCA 378 (833)
Q Consensus 331 ~i~~ViLvG-G~sriP~v~~~l~~~f---g~~~~~~~npdeava~Gaa~~aa 378 (833)
.+..|+++| |.++.|.+++.+.+.+ +.++..+.+|..+.|+|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 457899999 7999999999999988 56777888999999999999875
No 64
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=96.70 E-value=0.071 Score=56.06 Aligned_cols=102 Identities=14% Similarity=0.117 Sum_probs=59.4
Q ss_pred cCcEEEEecCccCH-HHHHHHHHHHHHcCCccEEeechhHHHHHHHhhhcCCCC---CCCCceEEEEEeCCceEEEEEEE
Q 003290 137 VVDCCIGIPVYFTD-LQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLP---ENDQLNVAFVDIGHASLQVCIAG 212 (833)
Q Consensus 137 ~~~~VITVP~~f~~-~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~---~~~~~~vlv~D~Gggt~dvsvv~ 212 (833)
-..+|+|=|.+--+ .|.....-..+--++.-+ ..-+.|+.+++-.+..+.+ ......+||+|.|.+-|-+.=
T Consensus 93 ~~~ivlTep~~~~psi~~~t~eilFEey~fd~v--~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip-- 168 (400)
T KOG0680|consen 93 DHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAV--LKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIP-- 168 (400)
T ss_pred cceEEEecccccccchhhhHHHHHHHHhccceE--eecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEeh--
Confidence 45799999987554 455555555677777643 3333333333331211111 112568999999998776442
Q ss_pred EeCCeEEEEEeeCCCCcccHHHHHHHHHHHH
Q 003290 213 FKKGQLKILGHSFDRSVGGRDFDEVLFQHFA 243 (833)
Q Consensus 213 ~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~ 243 (833)
+-.|...-.+.. -..+||..++..|.+.+-
T Consensus 169 ~v~g~~~~qaV~-RiDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 169 VVKGIPYYQAVK-RIDVGGKALTNLLKETIS 198 (400)
T ss_pred hhcCcchhhceE-EeecchHHHHHHHHHHhh
Confidence 333322222222 356999999999988764
No 65
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=96.60 E-value=0.12 Score=58.60 Aligned_cols=215 Identities=13% Similarity=0.151 Sum_probs=119.9
Q ss_pred HHHHHHHHHcCCcc----EEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeC---C----eEEEEE
Q 003290 154 RAVIDAATIAGLHP----LRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKK---G----QLKILG 222 (833)
Q Consensus 154 ~al~~Aa~~AGl~~----~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~---~----~~~vl~ 222 (833)
.....+|+..||.. ..-+=+.-|.+++-+.- ..+-|++=+|-+||.+.+-.-.. | ....+-
T Consensus 232 ~Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~--------~~~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~ 303 (544)
T COG1069 232 GLTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGA--------QPGSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVL 303 (544)
T ss_pred ccCHHHHHHhCCCCCcEEeccceeccccccccccC--------CCCeEEEEeccceEEEEecCCceecCccccccccccC
Confidence 34567888889862 22222334444333211 12345555788888877654331 1 112222
Q ss_pred eeCCCCcccHHHHHHHHHHHHHHHH---------hhhccCccCCHHHHHHHHHHHHHHhhhcCCCCceeEEEeccc----
Q 003290 223 HSFDRSVGGRDFDEVLFQHFAAKFK---------EEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLM---- 289 (833)
Q Consensus 223 ~~~d~~lGG~~~D~~l~~~l~~~~~---------~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~ie~l~---- 289 (833)
-++-..=||..-.=.|.+||.+... .+++.++. .....++..-+++.+...+....- +-++.+.
T Consensus 304 Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~l~~~l-~~l~~f~GNRs 380 (544)
T COG1069 304 PGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIY--ESLAQRLELLTEAAAAIPPLASGL-HVLDWFNGNRS 380 (544)
T ss_pred cchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHH--HHHHHHHHHHHhhHhccCcccCCc-EecccccCCcC
Confidence 2333456788888888888876521 11111111 123445555556666655332211 1111111
Q ss_pred --cCccc-------eEEecHHHHHHHHHHHHHHH---HHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCC
Q 003290 290 --EEKDV-------RGFIKRDEFEQISAPILERV---KRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGK 357 (833)
Q Consensus 290 --~~~d~-------~~~itr~efe~l~~~~~~~i---~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~ 357 (833)
-|-+. ++.=+.+.+-.+..-.+.-+ ...|-+++++.|+ .|+.|+.+||..+.|.+.+++....|+
T Consensus 381 P~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~---~Id~l~~sGG~~KN~llmql~aDvtg~ 457 (544)
T COG1069 381 PLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQGI---AIDTLFASGGIRKNPLLMQLYADVTGR 457 (544)
T ss_pred CCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCC---eeeEEEecCCcccCHHHHHHHHHhcCC
Confidence 11111 22223333334433444333 2334455666665 489999999999999999999999998
Q ss_pred CCCCCCCchhHHHhHHHHhchhhcCC
Q 003290 358 EPRRTMNASECVARGCALQCAILSPT 383 (833)
Q Consensus 358 ~~~~~~npdeava~Gaa~~aa~ls~~ 383 (833)
++... ..++++++|+|+.|+--.+.
T Consensus 458 ~v~i~-~s~~a~llGsAm~~avAag~ 482 (544)
T COG1069 458 PVVIP-ASDQAVLLGAAMFAAVAAGV 482 (544)
T ss_pred eEEee-cccchhhhHHHHHHHHHhcc
Confidence 87665 67899999999998865543
No 66
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=96.56 E-value=0.0023 Score=64.84 Aligned_cols=72 Identities=26% Similarity=0.464 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHc----CCCCCCccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchh
Q 003290 304 EQISAPILERVKRPLEKALAET----GLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAI 379 (833)
Q Consensus 304 e~l~~~~~~~i~~~i~~~l~~~----~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ 379 (833)
.+++.-+++.+.-.++..++.. +. .++.|+++||.++.|.+.+++.+.||.++....+ .++.|.|||+.|+.
T Consensus 121 ~~~~rAv~Egia~~~~~~~~~l~~~~~~---~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 121 ADLARAVLEGIAFSLRQILEELEELTGI---PIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS---CESEEEEESGGGGSHHHHHHHHHHHTSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHhhhhccccccc---cceeeEeccccccChHHHHHHHHHhCCceEeCCC-CchHHHHHHHHHHh
Confidence 3444445555544444444442 44 4899999999999999999999999988866544 89999999999864
No 67
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=96.50 E-value=0.016 Score=60.88 Aligned_cols=83 Identities=18% Similarity=0.168 Sum_probs=46.1
Q ss_pred EEEEecCccCHHHHHHHHHHHHHcCCccEE--------eechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEE
Q 003290 140 CCIGIPVYFTDLQRRAVIDAATIAGLHPLR--------LFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIA 211 (833)
Q Consensus 140 ~VITVP~~f~~~qR~al~~Aa~~AGl~~~~--------li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv 211 (833)
++||=-.--....|.++......||==++. +|--.-|-|..| .......|+=+|+||||+..|++
T Consensus 90 vIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~-------Seqr~t~v~NlDIGGGTtN~slF 162 (473)
T COG4819 90 VIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTL-------SEQRLTRVLNLDIGGGTTNYSLF 162 (473)
T ss_pred EEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccch-------hhhhceEEEEEeccCCccceeee
Confidence 555555545555666665555555533322 222222222222 22235678889999999999995
Q ss_pred EEeCCeEEEEEeeCCCCcccHHH
Q 003290 212 GFKKGQLKILGHSFDRSVGGRDF 234 (833)
Q Consensus 212 ~~~~~~~~vl~~~~d~~lGG~~~ 234 (833)
. .|+ +..+. -..+||+-+
T Consensus 163 D--~Gk--v~dTa-CLdiGGRLi 180 (473)
T COG4819 163 D--AGK--VSDTA-CLDIGGRLI 180 (473)
T ss_pred c--ccc--cccce-eeecCcEEE
Confidence 4 433 44444 256888743
No 68
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=95.96 E-value=1.2 Score=47.38 Aligned_cols=69 Identities=19% Similarity=0.173 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHh-----CCCCCCCCCchhHHHhHHHHhc
Q 003290 306 ISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFF-----GKEPRRTMNASECVARGCALQC 377 (833)
Q Consensus 306 l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~f-----g~~~~~~~npdeava~Gaa~~a 377 (833)
++....+.+...+..++.+.+..... |+|+||..+...+++.+.+.+ ..++.....|....+.||+++|
T Consensus 198 Il~~a~~~la~~i~~~~~~~~~~~~~---v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 198 ILAEAADELAELIKAVLKRLGPEKEP---VVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTCCCCS---EEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCe---EEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 34444555555556666554433222 999999999977776664444 2445667789999999999876
No 69
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=95.94 E-value=0.015 Score=53.78 Aligned_cols=48 Identities=27% Similarity=0.405 Sum_probs=27.6
Q ss_pred EEEEEeCCceEEEEEEEEe-CCeEEEEEeeCCCCcc--cHHHH--HHHHHHHH
Q 003290 196 VAFVDIGHASLQVCIAGFK-KGQLKILGHSFDRSVG--GRDFD--EVLFQHFA 243 (833)
Q Consensus 196 vlv~D~Gggt~dvsvv~~~-~~~~~vl~~~~d~~lG--G~~~D--~~l~~~l~ 243 (833)
|+++|+|++++.+.+++.. .+.+.+++.+.-...| |..|. ..+..-|.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~ 53 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIK 53 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHHT
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHHH
Confidence 6899999999999998873 4456666554333332 66666 55554443
No 70
>PRK15027 xylulokinase; Provisional
Probab=95.93 E-value=0.016 Score=67.41 Aligned_cols=83 Identities=13% Similarity=0.146 Sum_probs=58.5
Q ss_pred ecHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHh
Q 003290 298 IKRDEFEQISA-PILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQ 376 (833)
Q Consensus 298 itr~efe~l~~-~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~ 376 (833)
-+|.+|-..+- .+.-.+...+ +.|+..+. .++.|+++||+++.+...+++.+.||.++....+.+++.++|||+.
T Consensus 356 ~~~~~l~rAvlEgia~~~~~~~-~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~l 431 (484)
T PRK15027 356 HGPNELARAVLEGVGYALADGM-DVVHACGI---KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARL 431 (484)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHH
Confidence 35666544332 2222222223 33444443 4788999999999999999999999999866667777889999999
Q ss_pred chhhcCCC
Q 003290 377 CAILSPTF 384 (833)
Q Consensus 377 aa~ls~~~ 384 (833)
|+.-.+.+
T Consensus 432 A~~~~G~~ 439 (484)
T PRK15027 432 AQIAANPE 439 (484)
T ss_pred HHHhcCCc
Confidence 98766543
No 71
>PLN02669 xylulokinase
Probab=95.90 E-value=0.02 Score=67.55 Aligned_cols=72 Identities=18% Similarity=0.257 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchh
Q 003290 306 ISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAI 379 (833)
Q Consensus 306 l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ 379 (833)
++.-+++.+.-.++..++..+.. ..++.|+++||+|+.+.+.+.+.+.||.++.+.-.+ ++.++|||+.|+.
T Consensus 421 ~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 421 EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIFGCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecCCC-CchHHHHHHHHHH
Confidence 34555555555555555544432 357899999999999999999999999988665554 7889999999975
No 72
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=95.87 E-value=0.023 Score=66.96 Aligned_cols=85 Identities=12% Similarity=0.154 Sum_probs=63.9
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhc
Q 003290 298 IKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQC 377 (833)
Q Consensus 298 itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~a 377 (833)
=+|..+..++.-+++.+.-.++.+++...-....++.|.++||+++.+...+++.+.||.++.+..+ .|+.++|||+.|
T Consensus 410 ~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-~e~~alGaA~lA 488 (541)
T TIGR01315 410 RSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADACDMPVLIPYV-NEAVLHGAAMLG 488 (541)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHHCCeeEecCh-hHHHHHHHHHHH
Confidence 3566677777777777766666555543211124788999999999999999999999999876654 468899999999
Q ss_pred hhhcCC
Q 003290 378 AILSPT 383 (833)
Q Consensus 378 a~ls~~ 383 (833)
+.-.+.
T Consensus 489 ~~~~G~ 494 (541)
T TIGR01315 489 AKAAGT 494 (541)
T ss_pred HHhcCc
Confidence 866554
No 73
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.045 Score=58.97 Aligned_cols=106 Identities=16% Similarity=0.278 Sum_probs=72.0
Q ss_pred ccCCHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhccchHHHHHHhhhcchHHHHHHHHHHHHHHHHhhcCC
Q 003290 628 DFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEFTDRSSVIDQLAYCINSYREAALSSD 707 (833)
Q Consensus 628 ~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~ 707 (833)
..+++ +.|..++++++.+-.+| ...++|-++-+.|.+...+.+.-+....
T Consensus 538 ~rLt~---EdIerMv~eAekFAeeD---------------------------k~~KekieaRN~LE~YayslKnqi~dke 587 (663)
T KOG0100|consen 538 GRLTP---EDIERMVNEAEKFAEED---------------------------KKLKEKIEARNELESYAYSLKNQIGDKE 587 (663)
T ss_pred CCCCH---HHHHHHHHHHHHHhhhh---------------------------HHHHHHHHhHHHHHHHHHHhhhccCchh
Confidence 34555 45677888888888776 1112223333444444444444443322
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhHhhhcCCCC
Q 003290 708 PKFDHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCRPIMTKPKP 775 (833)
Q Consensus 708 ~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~k~kp 775 (833)
.--..++.++++.+.+.+++...||+++..+-. .|.+.|.++|+..|+||++|.=-
T Consensus 588 kLg~Kl~~edKe~~e~av~e~~eWL~~n~~a~~------------Ee~~ek~kele~vv~PiisklY~ 643 (663)
T KOG0100|consen 588 KLGGKLSDEDKETIEDAVEEALEWLESNQDASK------------EEFKEKKKELEAVVQPIISKLYG 643 (663)
T ss_pred HhcccCChhHHHHHHHHHHHHHHHHhhcccccH------------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 233568999999999999999999998744333 58999999999999999986543
No 74
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=95.56 E-value=0.13 Score=58.61 Aligned_cols=54 Identities=20% Similarity=0.372 Sum_probs=49.3
Q ss_pred CCccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhhcCCC
Q 003290 330 EDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTF 384 (833)
Q Consensus 330 ~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ls~~~ 384 (833)
..|+.+.+.||.|+.|.+-+.+.+.+|.++.++.+.|- ++.|||+.|+..++.+
T Consensus 413 ~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~GaA~l~~~a~~~~ 466 (516)
T KOG2517|consen 413 HPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VALGAAMLAGAASGKW 466 (516)
T ss_pred CCcceeeeccccccCHHHHHHHHHHhCCccccccchhH-HHHHHHHHHHhhcCCc
Confidence 46788999999999999999999999999999988887 9999999999888763
No 75
>PRK10854 exopolyphosphatase; Provisional
Probab=95.41 E-value=0.43 Score=55.84 Aligned_cols=76 Identities=18% Similarity=0.287 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCccEEeechhHHHHHHH-hhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccH
Q 003290 154 RAVIDAATIAGLHPLRLFHETTATALAY-GIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGR 232 (833)
Q Consensus 154 ~al~~Aa~~AGl~~~~li~EptAaAl~y-~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~ 232 (833)
..+..+-+..|+++ ++|+...=|-+.| |+.. .++. ....+|+|+|||+|.+++++ ++.+... .+ ..+|.-
T Consensus 100 ~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~-~l~~--~~~~lvvDIGGGStEl~~~~--~~~~~~~-~S--~~lG~v 170 (513)
T PRK10854 100 DFLKRAEKVIPYPI-EIISGNEEARLIFMGVEH-TQPE--KGRKLVIDIGGGSTELVIGE--NFEPILV-ES--RRMGCV 170 (513)
T ss_pred HHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhc-ccCC--CCCeEEEEeCCCeEEEEEec--CCCeeEe-EE--Eeccee
Confidence 33444556679996 7777776666666 4433 3332 35689999999999999965 3333222 22 267776
Q ss_pred HHHHHH
Q 003290 233 DFDEVL 238 (833)
Q Consensus 233 ~~D~~l 238 (833)
.+.+.+
T Consensus 171 rl~e~f 176 (513)
T PRK10854 171 SFAQLY 176 (513)
T ss_pred eHHhhh
Confidence 655543
No 76
>PRK00047 glpK glycerol kinase; Provisional
Probab=95.24 E-value=0.044 Score=64.02 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=44.5
Q ss_pred CccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhhcCC
Q 003290 331 DVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPT 383 (833)
Q Consensus 331 ~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ls~~ 383 (833)
.++.|.++||++|.+.+.+++.+.||.++... +..|+.++|||+.|+.-.+.
T Consensus 403 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~-~~~e~~a~GaA~~A~~~~G~ 454 (498)
T PRK00047 403 RLKELRVDGGAVANNFLMQFQADILGVPVERP-VVAETTALGAAYLAGLAVGF 454 (498)
T ss_pred CCceEEEecCcccCHHHHHHHHHhhCCeeEec-CcccchHHHHHHHHhhhcCc
Confidence 47889999999999999999999999988654 45578899999999866554
No 77
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=95.24 E-value=0.58 Score=54.50 Aligned_cols=77 Identities=23% Similarity=0.241 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCCccEEeechhHHHHHHH-hhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCccc
Q 003290 153 RRAVIDAATIAGLHPLRLFHETTATALAY-GIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGG 231 (833)
Q Consensus 153 R~al~~Aa~~AGl~~~~li~EptAaAl~y-~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG 231 (833)
...+..+-+..|+++ ++|+...=|-+.| |+... ++. ....+|+|+|||+|.+++++ ++.+. .....++|.
T Consensus 94 ~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~-l~~--~~~~lviDIGGGStEl~~~~--~~~~~---~~~Sl~lG~ 164 (496)
T PRK11031 94 DEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHT-TGG--ADQRLVVDIGGASTELVTGT--GAQAT---SLFSLSMGC 164 (496)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhc-cCC--CCCEEEEEecCCeeeEEEec--CCcee---eeeEEeccc
Confidence 344555556779996 6777766666665 44432 332 34689999999999999864 43331 122467888
Q ss_pred HHHHHHH
Q 003290 232 RDFDEVL 238 (833)
Q Consensus 232 ~~~D~~l 238 (833)
-.+.+.+
T Consensus 165 vrl~e~f 171 (496)
T PRK11031 165 VTWLERY 171 (496)
T ss_pred hHHHHHh
Confidence 7665444
No 78
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.20 E-value=0.053 Score=63.06 Aligned_cols=53 Identities=21% Similarity=0.318 Sum_probs=45.6
Q ss_pred CccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhhcCCC
Q 003290 331 DVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTF 384 (833)
Q Consensus 331 ~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ls~~~ 384 (833)
.++.|.++||++|.+.+.+++.+.||.++.... ..++.++|||+.|+.-.+.+
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~~-~~e~~a~GaA~~a~~~~g~~ 442 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIFGTPVDVPE-GEEGPALGAAILAAWALGEK 442 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHhCCceeecC-CCcchHHHHHHHHHHhcCCC
Confidence 478999999999999999999999999886654 66788999999998766543
No 79
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=95.19 E-value=0.58 Score=47.81 Aligned_cols=194 Identities=18% Similarity=0.204 Sum_probs=110.8
Q ss_pred cCcEEEEecCccCHHHHHHHHHH-HHHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeC
Q 003290 137 VVDCCIGIPVYFTDLQRRAVIDA-ATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKK 215 (833)
Q Consensus 137 ~~~~VITVP~~f~~~qR~al~~A-a~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~ 215 (833)
-..+.+|-|+--....|+.|... .+.-||.-+.+. --|+..-|+. .+ -.-+|+|-|.|-|-++-+. .+
T Consensus 101 ~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyva--iQAVLtLYAQ---GL-----~tGvVvDSGDGVTHi~PVy-e~ 169 (389)
T KOG0677|consen 101 NCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVA--IQAVLTLYAQ---GL-----LTGVVVDSGDGVTHIVPVY-EG 169 (389)
T ss_pred cCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEeh--HHHHHHHHHh---cc-----cceEEEecCCCeeEEeeee-cc
Confidence 44788999998888888777665 577888865443 2344434543 22 2348999999999876542 21
Q ss_pred CeEEEEEeeCCCCcccHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHhhhcCCC-----------CceeEE
Q 003290 216 GQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSAN-----------PEAPLN 284 (833)
Q Consensus 216 ~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~-----------~~~~~~ 284 (833)
-.+.-+ .....+.|+++++-|.+.|..+ -|..+-+.+ .......|+.|.-. -++.+-
T Consensus 170 ~~l~HL--trRldvAGRdiTryLi~LLl~r---GYafN~tAD-------FETVR~iKEKLCYisYd~e~e~kLalETTvL 237 (389)
T KOG0677|consen 170 FVLPHL--TRRLDVAGRDITRYLIKLLLRR---GYAFNHTAD-------FETVREIKEKLCYISYDLELEQKLALETTVL 237 (389)
T ss_pred eehhhh--hhhccccchhHHHHHHHHHHhh---ccccccccc-------hHHHHHHHhhheeEeechhhhhHhhhhheee
Confidence 111111 2335688999999999988765 122221111 13344455555311 112222
Q ss_pred Eec--cccCccceEEecHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCCCC--CCccEEEEeCCCCChHHHHHHHH
Q 003290 285 IEC--LMEEKDVRGFIKRDEFE---QISAPIL-----ERVKRPLEKALAETGLSV--EDVHMVEVVGSSSRVPAIIKILT 352 (833)
Q Consensus 285 ie~--l~~~~d~~~~itr~efe---~l~~~~~-----~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~sriP~v~~~l~ 352 (833)
+++ |.++. .+++--+.|| .+++|-+ ..+.+++=.+++.+.++. .-..+|+|.||++--|++-..|+
T Consensus 238 v~~YtLPDGR--vIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLE 315 (389)
T KOG0677|consen 238 VESYTLPDGR--VIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLE 315 (389)
T ss_pred eeeeecCCCc--EEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHH
Confidence 222 22332 2345555554 4555433 234455556666654432 12469999999999998887776
Q ss_pred HHh
Q 003290 353 EFF 355 (833)
Q Consensus 353 ~~f 355 (833)
+.+
T Consensus 316 kEl 318 (389)
T KOG0677|consen 316 KEL 318 (389)
T ss_pred HHH
Confidence 654
No 80
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=95.19 E-value=0.039 Score=64.34 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=45.1
Q ss_pred CccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhhcCCC
Q 003290 331 DVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTF 384 (833)
Q Consensus 331 ~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ls~~~ 384 (833)
.++.|.++||++|.+...+++.+.||.++... +..|+.|+|||+.|+.-.+.+
T Consensus 399 ~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~~-~~~e~~alGaA~~a~~~~G~~ 451 (493)
T TIGR01311 399 EITKLRVDGGMTNNNLLMQFQADILGVPVVRP-KVTETTALGAAYAAGLAVGYW 451 (493)
T ss_pred CCceEEEecccccCHHHHHHHHHhcCCeeEec-CCCcchHHHHHHHHHhhcCcC
Confidence 47899999999999999999999999988654 456788999999998665543
No 81
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=94.95 E-value=0.057 Score=63.65 Aligned_cols=52 Identities=17% Similarity=0.267 Sum_probs=45.1
Q ss_pred CccEEEEeCCC-CChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhhcCC
Q 003290 331 DVHMVEVVGSS-SRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPT 383 (833)
Q Consensus 331 ~i~~ViLvGG~-sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ls~~ 383 (833)
.++.|+++||+ ++.+.+.+++.+.||.++...-++ |+.++|||+.|+.-.+.
T Consensus 435 ~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~-e~~a~GaA~lA~~~~G~ 487 (536)
T TIGR01234 435 PVEELMAAGGIARKNPVIMQIYADVTNRPLQIVASD-QAPALGAAIFAAVAAGV 487 (536)
T ss_pred CcceEEEeCCccccCHHHHHHHHHhhCCeeEeccCC-cchhHHHHHHHHHHcCC
Confidence 47899999999 999999999999999998766554 68899999999876654
No 82
>PRK04123 ribulokinase; Provisional
Probab=94.92 E-value=0.053 Score=64.17 Aligned_cols=74 Identities=18% Similarity=0.336 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHH---HHHcCCCCCCccEEEEeCCC-CChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhhc
Q 003290 306 ISAPILERVKRPLEKA---LAETGLSVEDVHMVEVVGSS-SRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILS 381 (833)
Q Consensus 306 l~~~~~~~i~~~i~~~---l~~~~~~~~~i~~ViLvGG~-sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ls 381 (833)
++.-+++.+.-.++.+ |++.+. .++.|.++||+ ++.+.+.+++.+.||.++.+.- ..|+.++|||+.|+.-.
T Consensus 413 l~RAvlEgia~~~~~~~e~l~~~g~---~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~-~~e~~alGaA~lA~~~~ 488 (548)
T PRK04123 413 IYRALIEATAFGTRAIMECFEDQGV---PVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVA-SDQCPALGAAIFAAVAA 488 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC---CcceEEEeCCCcccCHHHHHHHHHhcCCceEecC-ccccchHHHHHHHHHHh
Confidence 3444444444333333 333343 47889999999 9999999999999999885554 56788999999998655
Q ss_pred CC
Q 003290 382 PT 383 (833)
Q Consensus 382 ~~ 383 (833)
+.
T Consensus 489 G~ 490 (548)
T PRK04123 489 GA 490 (548)
T ss_pred cc
Confidence 43
No 83
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=94.91 E-value=0.064 Score=62.75 Aligned_cols=52 Identities=17% Similarity=0.285 Sum_probs=44.5
Q ss_pred CccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhhcCC
Q 003290 331 DVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPT 383 (833)
Q Consensus 331 ~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ls~~ 383 (833)
.++.|.++||+++.+.+.+++.+.||.++...- ..|+.++|||+.|+.-.+.
T Consensus 406 ~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~-~~e~~alGaAl~aa~a~G~ 457 (504)
T PTZ00294 406 ELNSLRVDGGLTKNKLLMQFQADILGKDIVVPE-MAETTALGAALLAGLAVGV 457 (504)
T ss_pred CcceEEEecccccCHHHHHHHHHHhCCceEecC-cccchHHHHHHHHHhhcCc
Confidence 378899999999999999999999999986554 5568899999999866554
No 84
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=94.85 E-value=0.68 Score=54.13 Aligned_cols=51 Identities=27% Similarity=0.249 Sum_probs=38.5
Q ss_pred CCccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhhc
Q 003290 330 EDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILS 381 (833)
Q Consensus 330 ~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ls 381 (833)
..++.|.++||++|.+...+++.+.||.++..... .|+.+.|+|..++...
T Consensus 400 ~~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~-~e~~a~g~A~~~~~~~ 450 (502)
T COG1070 400 KPPSRVRVVGGGARSPLWLQILADALGLPVVVPEV-EEAGALGGAALAAAAL 450 (502)
T ss_pred CCccEEEEECCcccCHHHHHHHHHHcCCeeEecCc-ccchHHHHHHHHHHHh
Confidence 35679999999999999999999999998875544 4555555555554443
No 85
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=94.84 E-value=0.061 Score=62.25 Aligned_cols=52 Identities=13% Similarity=0.081 Sum_probs=44.5
Q ss_pred CccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhhcCC
Q 003290 331 DVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPT 383 (833)
Q Consensus 331 ~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ls~~ 383 (833)
.++.|.++||+++.|...+++.+.||.++...-+ .++.++|||+.|+.-.+.
T Consensus 393 ~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~-~e~~~lGaA~~a~~a~G~ 444 (465)
T TIGR02628 393 KASELLLVGGGSKNTLWNQIRANMLDIPVKVVDD-AETTVAGAAMFGFYGVGE 444 (465)
T ss_pred CcceEEEecCccCCHHHHHHhhhhcCCeeEeccC-CcchHHHHHHHHHHhcCc
Confidence 4788999999999999999999999998866555 478899999999865543
No 86
>PRK10331 L-fuculokinase; Provisional
Probab=94.74 E-value=0.069 Score=61.93 Aligned_cols=83 Identities=18% Similarity=0.150 Sum_probs=56.5
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCCccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHh
Q 003290 298 IKRDEFEQISAPILERVKRPLEKALAETG-LSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQ 376 (833)
Q Consensus 298 itr~efe~l~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~ 376 (833)
-+|.+| +.-+++.+.-.++..++... .....++.|.++||+++.+...+++.+.||.++...- ..|+.++|||+.
T Consensus 358 ~~~~~l---~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~a~GaA~l 433 (470)
T PRK10331 358 TTRGHF---YRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANMLDIPIKVLD-DAETTVAGAAMF 433 (470)
T ss_pred cCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhcCCeeEecC-cccchHHHHHHH
Confidence 345554 34444444433333333321 1122478999999999999999999999999986554 456889999999
Q ss_pred chhhcCCC
Q 003290 377 CAILSPTF 384 (833)
Q Consensus 377 aa~ls~~~ 384 (833)
|+.-.+.+
T Consensus 434 a~~~~G~~ 441 (470)
T PRK10331 434 GWYGVGEF 441 (470)
T ss_pred HHHhcCCC
Confidence 98665543
No 87
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=94.71 E-value=2.6 Score=47.47 Aligned_cols=60 Identities=17% Similarity=0.218 Sum_probs=40.0
Q ss_pred ccceEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHH
Q 003290 292 KDVRGFIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILT 352 (833)
Q Consensus 292 ~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~ 352 (833)
..-.+.||..++.++.. --.-|..-++-.|+++|++.+||+.|+|.||+.+-=-+.+.+.
T Consensus 289 ~~~~i~itq~DIr~~ql-AKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~ 348 (412)
T PF14574_consen 289 IGDDIYITQKDIREFQL-AKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIR 348 (412)
T ss_dssp SSS-EEEEHHHHHHHHH-HHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHH
T ss_pred CCCCEEEeHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhh
Confidence 34457899999876632 2233455567788999999999999999999998777776663
No 88
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=94.64 E-value=0.59 Score=50.74 Aligned_cols=76 Identities=20% Similarity=0.189 Sum_probs=46.1
Q ss_pred HHHHHHHH-HHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCccc
Q 003290 153 RRAVIDAA-TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGG 231 (833)
Q Consensus 153 R~al~~Aa-~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG 231 (833)
+..+.+.. +..|+++ ++|+...=|.+.|.--...++. ...+++|+|||+|.++++. ++.+ . .....++|.
T Consensus 87 ~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~---~~~~v~DiGGGSte~~~~~--~~~~--~-~~~Sl~lG~ 157 (300)
T TIGR03706 87 GPEFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPI---ADGLVVDIGGGSTELILGK--DFEP--G-EGVSLPLGC 157 (300)
T ss_pred HHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCC---CCcEEEEecCCeEEEEEec--CCCE--e-EEEEEccce
Confidence 33444444 5679986 7888887777777422223331 2349999999999999864 3322 1 122356666
Q ss_pred HHHHHH
Q 003290 232 RDFDEV 237 (833)
Q Consensus 232 ~~~D~~ 237 (833)
..+.+.
T Consensus 158 vrl~e~ 163 (300)
T TIGR03706 158 VRLTEQ 163 (300)
T ss_pred EEhHHh
Confidence 655544
No 89
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=94.60 E-value=0.079 Score=61.11 Aligned_cols=52 Identities=12% Similarity=0.089 Sum_probs=44.4
Q ss_pred CccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhhcCCC
Q 003290 331 DVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTF 384 (833)
Q Consensus 331 ~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ls~~~ 384 (833)
.++.|.++||++|.+...+++.+.+|.++... +.|+.++|||+.|+.-.+.+
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~--~~e~~a~GaA~~a~~~~G~~ 438 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADACGIRVIAG--PVEASTLGNIGVQLMALDEI 438 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHhCCceEcC--CchHHHHHHHHHHHHhcCCc
Confidence 47889999999999999999999999998643 36789999999998765543
No 90
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=94.59 E-value=0.086 Score=57.99 Aligned_cols=56 Identities=25% Similarity=0.366 Sum_probs=48.5
Q ss_pred HHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchh
Q 003290 323 AETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAI 379 (833)
Q Consensus 323 ~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ 379 (833)
+..|........|+++||.||.-.|-+.|.+.||.++..- ...++++.|+|+.|+.
T Consensus 434 ~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 434 EPLGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred ccccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEee-cCCchhhHHHHHHHHH
Confidence 3456666778999999999999999999999999988765 8888999999999763
No 91
>PLN02295 glycerol kinase
Probab=94.57 E-value=0.081 Score=62.04 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=44.6
Q ss_pred CccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhhcCC
Q 003290 331 DVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPT 383 (833)
Q Consensus 331 ~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ls~~ 383 (833)
.++.|.++||+++.+.+.+++.+.||.++... +..|+.++|||+.|+.-.+.
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~-~~~e~~alGaA~~A~~~~G~ 463 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLLGSPVVRP-ADIETTALGAAYAAGLAVGL 463 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhcCCceEec-CccccHHHHHHHHHHhhcCc
Confidence 57889999999999999999999999998554 45578899999998766654
No 92
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=94.43 E-value=0.085 Score=61.76 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=44.8
Q ss_pred CccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhhcCC
Q 003290 331 DVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPT 383 (833)
Q Consensus 331 ~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ls~~ 383 (833)
.++.|.++||+++.+...+++.+.||.++...-++ |+.++|||+.|+.-.+.
T Consensus 401 ~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~-e~~a~GaA~la~~~~G~ 452 (505)
T TIGR01314 401 PLNMIQATGGFASSEVWRQMMSDIFEQEIVVPESY-ESSCLGACILGLKALGL 452 (505)
T ss_pred CCcEEEEecCcccCHHHHHHHHHHcCCeeEecCCC-CcchHHHHHHHHHhcCc
Confidence 48899999999999999999999999998665544 68899999999866554
No 93
>PRK09604 UGMP family protein; Validated
Probab=94.11 E-value=3.9 Score=44.98 Aligned_cols=58 Identities=19% Similarity=0.131 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHh---CCCCCCCC---CchhHHHhHHHHh
Q 003290 314 VKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFF---GKEPRRTM---NASECVARGCALQ 376 (833)
Q Consensus 314 i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~f---g~~~~~~~---npdeava~Gaa~~ 376 (833)
+...++.+++.. .++.|+|.||......+++.|.+.+ |.++..+. -.|.++++|+|=+
T Consensus 242 l~~~~~~~~~~~-----~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~ 305 (332)
T PRK09604 242 LVIKTKRALKQT-----GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGY 305 (332)
T ss_pred HHHHHHHHHHHh-----CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHH
Confidence 334444444443 4678999999999999999999988 44433322 4688999998743
No 94
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=94.04 E-value=0.13 Score=59.69 Aligned_cols=52 Identities=10% Similarity=0.049 Sum_probs=44.2
Q ss_pred CccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhhcCCC
Q 003290 331 DVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTF 384 (833)
Q Consensus 331 ~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ls~~~ 384 (833)
.++.|.++||++|.+...+++.+.+|.++.... .++.++|||+.|+.-.+.+
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~--~ea~alGaa~~a~~a~G~~ 426 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADACGIRVIAGP--VEASTLGNIGIQLMTLDEL 426 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHhCCCeeeCC--hhHHHHHHHHHHHHHcCCc
Confidence 478899999999999999999999999986543 3799999999988766543
No 95
>PRK09557 fructokinase; Reviewed
Probab=93.96 E-value=2.8 Score=45.40 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=28.9
Q ss_pred cCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEE
Q 003290 163 AGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIA 211 (833)
Q Consensus 163 AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv 211 (833)
.|++ +.+.|+..|+|++-.+..... ..++++++.+|.| +-.+++
T Consensus 96 ~~~p-v~~~NDa~aaA~aE~~~g~~~---~~~~~~~l~igtG-iG~giv 139 (301)
T PRK09557 96 LNRE-VRLANDANCLAVSEAVDGAAA---GKQTVFAVIIGTG-CGAGVA 139 (301)
T ss_pred HCCC-EEEccchhHHHHHHHHhcccC---CCCcEEEEEEccc-eEEEEE
Confidence 4786 579999999998765432211 2467888888854 344444
No 96
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=93.96 E-value=0.12 Score=60.78 Aligned_cols=52 Identities=19% Similarity=0.223 Sum_probs=44.5
Q ss_pred CccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhhcCC
Q 003290 331 DVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPT 383 (833)
Q Consensus 331 ~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ls~~ 383 (833)
.++.|.++||++|.+...+++.+.||.++....++ ++.++|||+.|+.-.+.
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~alGaA~lA~~~~G~ 460 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVVK-EATALGCAIAAGVGAGI 460 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhcCCeeEEeccc-CchHHHHHHHHHHHhCC
Confidence 47899999999999999999999999998766544 67899999998866553
No 97
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.90 E-value=0.97 Score=52.08 Aligned_cols=95 Identities=18% Similarity=0.192 Sum_probs=54.3
Q ss_pred eCHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCccC---HHHHHHHHHHHHHcCCccEEeechhHHHHHHH-hhhcCC
Q 003290 112 FTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFT---DLQRRAVIDAATIAGLHPLRLFHETTATALAY-GIYKTD 187 (833)
Q Consensus 112 ~~~eel~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~---~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y-~~~~~~ 187 (833)
++++ .+...+..|+..++..-+.++..+. .|=.... .+.-..+..+-+..|+++ .+|+.-+=|-+.| |+-. .
T Consensus 49 L~~e-ai~R~~~aL~~f~e~~~~~~~~~v~-~vATsA~R~A~N~~eFl~rv~~~~G~~i-evIsGeeEArl~~lGv~~-~ 124 (492)
T COG0248 49 LSEE-AIERALSALKRFAELLDGFGAEEVR-VVATSALRDAPNGDEFLARVEKELGLPI-EVISGEEEARLIYLGVAS-T 124 (492)
T ss_pred cCHH-HHHHHHHHHHHHHHHHhhCCCCEEE-EehhHHHHcCCCHHHHHHHHHHHhCCce-EEeccHHHHHHHHHHHHh-c
Confidence 3443 3444455555555444454555522 2211111 122345777778889996 5665554444444 4443 2
Q ss_pred CCCCCCceEEEEEeCCceEEEEEEE
Q 003290 188 LPENDQLNVAFVDIGHASLQVCIAG 212 (833)
Q Consensus 188 ~~~~~~~~vlv~D~Gggt~dvsvv~ 212 (833)
++. ....+|+|+|||+|.+++..
T Consensus 125 ~~~--~~~~lv~DIGGGStEl~~g~ 147 (492)
T COG0248 125 LPR--KGDGLVIDIGGGSTELVLGD 147 (492)
T ss_pred CCC--CCCEEEEEecCCeEEEEEec
Confidence 332 56799999999999999986
No 98
>PF13941 MutL: MutL protein
Probab=93.58 E-value=0.35 Score=54.85 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=30.1
Q ss_pred EEEEEcCccceEEEEEE--CCceEEEcCCCCCccceEEEEEcCCceEecH
Q 003290 3 VVGFDLGNESCIVAVAR--QRGIDVVLNDESKRETPSIVCFGDKQRFIGT 50 (833)
Q Consensus 3 viGID~GTt~s~va~~~--~~~~~ii~n~~~~r~tPs~V~~~~~~~~~G~ 50 (833)
++.+||||||+++..+. .+...++- .-..||.| -. +...+|-
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig----~a~apTTv-~~-~Dv~~G~ 45 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIG----QAEAPTTV-EP-GDVTIGL 45 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEE----EEeCCCCc-Cc-ccHHHHH
Confidence 78999999999999988 66667763 33557777 22 4455563
No 99
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=93.25 E-value=1.4 Score=47.00 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=38.5
Q ss_pred CCccEEEEeCC-CCChHHHHHHHHHHhC---CCCCCCCCchhHHHhHHHH
Q 003290 330 EDVHMVEVVGS-SSRVPAIIKILTEFFG---KEPRRTMNASECVARGCAL 375 (833)
Q Consensus 330 ~~i~~ViLvGG-~sriP~v~~~l~~~fg---~~~~~~~npdeava~Gaa~ 375 (833)
..+..|+++|| .+..|.+++.+...+. .+...+-|....+|+||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 35788999999 6778999999988874 5566777899999999986
No 100
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=93.20 E-value=0.26 Score=53.16 Aligned_cols=67 Identities=21% Similarity=0.191 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCC-CCCCCCCchhHHHhHHHH
Q 003290 306 ISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGK-EPRRTMNASECVARGCAL 375 (833)
Q Consensus 306 l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~-~~~~~~npdeava~Gaa~ 375 (833)
+++-..+++...|+.+....+..+.+ -.++.+||.+ |++...|.+.+|. .+..+..+.-+.|+||++
T Consensus 216 i~~~~~~~m~~~i~~~~~~~g~~~~~-~~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 216 IVRIANENMADAIREVSVERGYDPRD-FPLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--EEE-E-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCccc-cccccccccc--cccccccccccccccccccccccccccccccc
Confidence 33344455555555554444554333 2344556665 7788888888885 455555678889999975
No 101
>PRK09698 D-allose kinase; Provisional
Probab=93.17 E-value=13 Score=40.22 Aligned_cols=43 Identities=12% Similarity=-0.040 Sum_probs=28.6
Q ss_pred cCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEE
Q 003290 163 AGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIA 211 (833)
Q Consensus 163 AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv 211 (833)
.|++ +.+.|+..|+|++-..... . ...+++++.+|.| .-.+++
T Consensus 104 ~~~p-v~v~NDa~aaa~~E~~~~~-~---~~~~~~~v~lgtG-IG~giv 146 (302)
T PRK09698 104 LNCP-VFFSRDVNLQLLWDVKENN-L---TQQLVLGAYLGTG-MGFAVW 146 (302)
T ss_pred hCCC-EEEcchHhHHHHHHHHhcC-C---CCceEEEEEecCc-eEEEEE
Confidence 4776 5799999999886543321 1 2457888899866 444444
No 102
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=93.14 E-value=0.64 Score=52.44 Aligned_cols=120 Identities=13% Similarity=0.171 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHhcCC-CcCcEEEEecCccCHHHHHHHHHH-HHHcCCccEEeechhHHHHHHHhhhcCCCCCCCC
Q 003290 116 QVLGMLLSNLKAIAESNLNA-AVVDCCIGIPVYFTDLQRRAVIDA-ATIAGLHPLRLFHETTATALAYGIYKTDLPENDQ 193 (833)
Q Consensus 116 el~a~~L~~l~~~ae~~~~~-~~~~~VITVP~~f~~~qR~al~~A-a~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~ 193 (833)
++.-.+|.|+....--. +. -...+++|=+..=-..+|..|... .+.-|++-+.+=-+.. |..+. +......
T Consensus 95 el~E~ilDY~F~~LG~~-~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDsl-----fS~~h-N~~~~~~ 167 (645)
T KOG0681|consen 95 ELMEQILDYIFGKLGVD-GQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSL-----FSFYH-NYGKSSN 167 (645)
T ss_pred HHHHHHHHHHHHhcCCC-ccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhH-----HHHhh-ccCcccC
Confidence 45555555554422111 11 134578888877777888888766 4666887654322211 22221 1111123
Q ss_pred ceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHHHHHHHH
Q 003290 194 LNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAK 245 (833)
Q Consensus 194 ~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~ 245 (833)
...||+++|..+|-|-.| -+|.. ++....-.++||...-.-|.+++.-+
T Consensus 168 ~~~liis~g~~~T~vipv--ldG~~-il~~~kRiN~GG~qa~dYL~~Lmq~K 216 (645)
T KOG0681|consen 168 KSGLIISMGHSATHVIPV--LDGRL-ILKDVKRINWGGYQAGDYLSRLMQLK 216 (645)
T ss_pred cceEEEecCCCcceeEEE--ecCch-hhhcceeeccCcchHHHHHHHHHhcc
Confidence 468999999999986654 44444 33444468899998876666665543
No 103
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=92.51 E-value=0.65 Score=47.59 Aligned_cols=73 Identities=16% Similarity=0.221 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHHHHHHHHHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEe
Q 003290 122 LSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDI 201 (833)
Q Consensus 122 L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~ 201 (833)
+.++++..+..++.++ .|+++-..|... .++.+--+.| || +|...-+-+....++.++++||
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ss--Ea~~~~~~vA-------------Aa-NW~Ata~~~~e~~~dsci~VD~ 137 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSS--EALKNPREVA-------------AA-NWVATARFLAEEIKDSCILVDM 137 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcCh--hHhcCHHHHH-------------Hh-hhHHHHHHHHHhcCCceEEEec
Confidence 4566677777777666 888998888764 3322221111 11 1111110001112577999999
Q ss_pred CCceEEEEEEE
Q 003290 202 GHASLQVCIAG 212 (833)
Q Consensus 202 Gggt~dvsvv~ 212 (833)
|+.|+|+-=+.
T Consensus 138 GSTTtDIIPi~ 148 (330)
T COG1548 138 GSTTTDIIPIK 148 (330)
T ss_pred CCcccceEeec
Confidence 99999976543
No 104
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=92.41 E-value=0.87 Score=48.99 Aligned_cols=74 Identities=18% Similarity=0.350 Sum_probs=43.4
Q ss_pred HHHHHHHcCCccEEeechhHHHHHHH-hhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHH
Q 003290 156 VIDAATIAGLHPLRLFHETTATALAY-GIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDF 234 (833)
Q Consensus 156 l~~Aa~~AGl~~~~li~EptAaAl~y-~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~ 234 (833)
+...-+..|+++ .+|+...=|.+.| |... .++ .....+++|+|||+|.+++++ ++.+.- .. ..++|.-.+
T Consensus 77 ~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~-~l~--~~~~~lviDIGGGStEl~~~~--~~~~~~-~~--Sl~lG~vrl 147 (285)
T PF02541_consen 77 LDRIKKETGIDI-EIISGEEEARLSFLGVLS-SLP--PDKNGLVIDIGGGSTELILFE--NGKVVF-SQ--SLPLGAVRL 147 (285)
T ss_dssp HHHHHHHHSS-E-EEE-HHHHHHHHHHHHHH-HST--TTSSEEEEEEESSEEEEEEEE--TTEEEE-EE--EES--HHHH
T ss_pred HHHHHHHhCCce-EEecHHHHHHHHHHHHHh-hcc--ccCCEEEEEECCCceEEEEEE--CCeeeE-ee--eeehHHHHH
Confidence 444445679996 6666666555555 3332 231 356799999999999988854 443322 12 367998877
Q ss_pred HHHH
Q 003290 235 DEVL 238 (833)
Q Consensus 235 D~~l 238 (833)
.+.+
T Consensus 148 ~e~~ 151 (285)
T PF02541_consen 148 TERF 151 (285)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6555
No 105
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=92.17 E-value=0.7 Score=46.32 Aligned_cols=28 Identities=21% Similarity=0.119 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCccEEeechhHHHHH
Q 003290 152 QRRAVIDAATIAGLHPLRLFHETTATAL 179 (833)
Q Consensus 152 qR~al~~Aa~~AGl~~~~li~EptAaAl 179 (833)
..+.+..+++.|||++..++.+|.|++.
T Consensus 158 ~v~n~~~~v~~agl~v~~i~~~~~A~~~ 185 (187)
T smart00842 158 AIQNLEKCVERAGLEVDGIVLEPLASAE 185 (187)
T ss_pred HHHHHHHHHHHcCCchhhEEehhhhhEe
Confidence 4677888999999999999999999874
No 106
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=91.64 E-value=2.9 Score=45.63 Aligned_cols=93 Identities=15% Similarity=0.195 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHh--cCCCcCcEEEEecCccCHHH------------HHHHHHHH-HHcCCccEEeechhHHHH
Q 003290 114 PTQVLGMLLSNLKAIAESN--LNAAVVDCCIGIPVYFTDLQ------------RRAVIDAA-TIAGLHPLRLFHETTATA 178 (833)
Q Consensus 114 ~eel~a~~L~~l~~~ae~~--~~~~~~~~VITVP~~f~~~q------------R~al~~Aa-~~AGl~~~~li~EptAaA 178 (833)
+++++..+...+.+..+.. ...++..+.|++|..++... .-.+.+.. +..|++ +.+.|+..|+|
T Consensus 33 ~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~~~a 111 (318)
T TIGR00744 33 PETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLP-VVVENDANAAA 111 (318)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCC-EEEechHHHHH
Confidence 3444444444444433322 12346677888887554221 11233332 344776 57999999999
Q ss_pred HHHhhhcCCCCCCCCceEEEEEeCCceEEEEEE
Q 003290 179 LAYGIYKTDLPENDQLNVAFVDIGHASLQVCIA 211 (833)
Q Consensus 179 l~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv 211 (833)
++-.+..... ..++++++.+|.|- -.+++
T Consensus 112 laE~~~g~~~---~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 112 LGEYKKGAGK---GARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHHHHhcccC---CCCcEEEEEeCCcc-EEEEE
Confidence 8765443211 24689999999875 55554
No 107
>PTZ00297 pantothenate kinase; Provisional
Probab=91.31 E-value=17 Score=47.77 Aligned_cols=73 Identities=16% Similarity=0.117 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCC-CChHHHHHHHHHHh-----C-CCCCCCCCchhHHHhHHHHh
Q 003290 304 EQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSS-SRVPAIIKILTEFF-----G-KEPRRTMNASECVARGCALQ 376 (833)
Q Consensus 304 e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-sriP~v~~~l~~~f-----g-~~~~~~~npdeava~Gaa~~ 376 (833)
++++.-++.-|...|-++--- .-...+|+.|+++|++ ..-|...+.|...+ | ......-+.-..-|+||++.
T Consensus 1365 ~Di~~sll~~is~nIgqia~l-~a~~~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga~~~ 1443 (1452)
T PTZ00297 1365 IDIVRSLLNMISSNVTQLAYL-HSRVQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALGCATL 1443 (1452)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHcCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhhhhhc
Confidence 344555555544444332111 1123468999999995 55888888887664 2 23333345667788998875
Q ss_pred c
Q 003290 377 C 377 (833)
Q Consensus 377 a 377 (833)
.
T Consensus 1444 ~ 1444 (1452)
T PTZ00297 1444 D 1444 (1452)
T ss_pred C
Confidence 4
No 108
>PLN02666 5-oxoprolinase
Probab=91.26 E-value=2.3 Score=54.55 Aligned_cols=62 Identities=16% Similarity=0.199 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCCC-CCCCCCchhHHHhHHHHh
Q 003290 312 ERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKE-PRRTMNASECVARGCALQ 376 (833)
Q Consensus 312 ~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~-~~~~~npdeava~Gaa~~ 376 (833)
..+...|+.+....|.++.+. .++..||+. |...-.|.+.+|.+ +..+.+|.-..|+|+++.
T Consensus 469 ~~m~~air~i~~~~G~dpr~~-~l~afGGag--p~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~a 531 (1275)
T PLN02666 469 EAMCRPIRQLTEMKGYETANH-ALACFGGAG--PQHACAIARALGMSEVFVHRYCGILSAYGMGLA 531 (1275)
T ss_pred HHHHHHHHHHHHHcCCCCCCc-eEEEecCcH--HHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhh
Confidence 444555666666667766543 334455554 77888899999965 777889999999998753
No 109
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=90.89 E-value=26 Score=37.64 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=30.9
Q ss_pred CccEEEEeCCCCChHHHHHHHHHHhCC-------CCCCCCCchhHHHhHHHHhch
Q 003290 331 DVHMVEVVGSSSRVPAIIKILTEFFGK-------EPRRTMNASECVARGCALQCA 378 (833)
Q Consensus 331 ~i~~ViLvGG~sriP~v~~~l~~~fg~-------~~~~~~npdeava~Gaa~~aa 378 (833)
+++.|+|-||.+..+.+.+.|++.+.. ++......+.+.++|||.++.
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 467888888877666655666665531 122233456788999998763
No 110
>PTZ00288 glucokinase 1; Provisional
Probab=90.19 E-value=7.6 Score=43.83 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=16.9
Q ss_pred eEEEEEcCccceEEEEEEC
Q 003290 2 SVVGFDLGNESCIVAVARQ 20 (833)
Q Consensus 2 ~viGID~GTt~s~va~~~~ 20 (833)
-++|+|+|.|++++++++.
T Consensus 27 ~~~~~DiGgt~~R~~~~~~ 45 (405)
T PTZ00288 27 IFVGCDVGGTNARVGFARE 45 (405)
T ss_pred eEEEEEecCCceEEEEEec
Confidence 4899999999999999864
No 111
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=90.15 E-value=0.27 Score=55.24 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCCCCCC--ccEEEEeCCCCChHHHHHHHHHHh-C-------CCCCCCCCchhHHHhHHHHhchh
Q 003290 314 VKRPLEKALAETGLSVED--VHMVEVVGSSSRVPAIIKILTEFF-G-------KEPRRTMNASECVARGCALQCAI 379 (833)
Q Consensus 314 i~~~i~~~l~~~~~~~~~--i~~ViLvGG~sriP~v~~~l~~~f-g-------~~~~~~~npdeava~Gaa~~aa~ 379 (833)
|..++..+|.+.-..... +..|+|+||+|.+|++.+.|...+ + ..|.+..||-..+=+||+.+|+.
T Consensus 539 l~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 539 LAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred HHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 445555666554222222 889999999999999999998876 2 23556779999999999999986
No 112
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=89.75 E-value=5.6 Score=43.31 Aligned_cols=53 Identities=23% Similarity=0.305 Sum_probs=38.6
Q ss_pred CCccEEEEeCCCCChHHHHHHHHHHhCC----CCCCCCCc----hhHHHhHHHHhchhhcCC
Q 003290 330 EDVHMVEVVGSSSRVPAIIKILTEFFGK----EPRRTMNA----SECVARGCALQCAILSPT 383 (833)
Q Consensus 330 ~~i~~ViLvGG~sriP~v~~~l~~~fg~----~~~~~~np----deava~Gaa~~aa~ls~~ 383 (833)
.+.+.|+|.|-.+|+|-+.+.+++.|+. ++ ..+.+ -...|+|+|+.|.-+.+.
T Consensus 259 ~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v-~~l~~~~~~aKeaA~GaAiIA~glaGG 319 (343)
T PF07318_consen 259 PDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKV-RKLEGLARKAKEAAQGAAIIANGLAGG 319 (343)
T ss_pred CCCCEEEEeccccccHHHHHHHHHHHHhhcccce-eecccccccchhhhhhHHHHhhhhhcc
Confidence 4678999999999999998888888742 22 12222 134799999998777654
No 113
>PLN02914 hexokinase
Probab=88.61 E-value=54 Score=38.02 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=31.6
Q ss_pred HHHHHHHHHHcC--CccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEE
Q 003290 153 RRAVIDAATIAG--LHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGF 213 (833)
Q Consensus 153 R~al~~Aa~~AG--l~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~ 213 (833)
.+.|.+|.+.-| +++..|||+.+|..++.++.. +...+-+=+|-||=-+.+-++
T Consensus 208 v~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~-------~~~~iGlIlGTGtNacY~E~~ 263 (490)
T PLN02914 208 VACLNEAMERQGLDMRVSALVNDTVGTLAGARYWD-------DDVMVAVILGTGTNACYVERT 263 (490)
T ss_pred HHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCC-------CCceEEEEEECCeeeEEEeec
Confidence 344455554444 457889999999887665432 223333336777655554443
No 114
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=88.54 E-value=1.4 Score=53.13 Aligned_cols=68 Identities=13% Similarity=0.099 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHh
Q 003290 687 SVIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFC 766 (833)
Q Consensus 687 ~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~ 766 (833)
++.+.|...+..++..+.. -...+++++++++.+.+++++.||+.. ...+++.|+++|+..+
T Consensus 527 eakN~le~~i~~~~~~l~~---~~~~~~~~e~~~i~~~l~~~~~wL~~~---------------~~~~i~~k~~~L~~~~ 588 (627)
T PRK00290 527 EARNQADSLIYQTEKTLKE---LGDKVPADEKEKIEAAIKELKEALKGE---------------DKEAIKAKTEELTQAS 588 (627)
T ss_pred HHHHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHHH
Confidence 3555677777777776642 224689999999999999999999853 2478999999999999
Q ss_pred HhhhcC
Q 003290 767 RPIMTK 772 (833)
Q Consensus 767 ~~l~~k 772 (833)
++++.|
T Consensus 589 ~~~~~~ 594 (627)
T PRK00290 589 QKLGEA 594 (627)
T ss_pred HHHHHH
Confidence 999964
No 115
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=88.45 E-value=4.8 Score=44.61 Aligned_cols=71 Identities=15% Similarity=0.203 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCCCCCC----CCCchhHHHhHHHHhchh
Q 003290 306 ISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRR----TMNASECVARGCALQCAI 379 (833)
Q Consensus 306 l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~----~~npdeava~Gaa~~aa~ 379 (833)
++.-+..=+...|.+.+.... ..++.|+++||+++.|.+.+.|++.++.++.. .+++|--=|+.-|++|..
T Consensus 264 ~~aTlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da~EA~aFA~La~~ 338 (365)
T PRK09585 264 VQATLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDAKEALAFAWLAVR 338 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhHHHHHHHHHHHHH
Confidence 333344444444555554432 23568999999999999999999998633321 244554445555666643
No 116
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=88.25 E-value=3.4 Score=49.99 Aligned_cols=77 Identities=17% Similarity=0.289 Sum_probs=58.3
Q ss_pred chHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHH
Q 003290 685 RSSVIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDR 764 (833)
Q Consensus 685 rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~ 764 (833)
|-++.+.|...|..++..+... +-...+++++++.+.+.+++++.||++.- .-+..+++.|+++|..
T Consensus 537 ~~eakN~lEs~Iy~~r~~L~~~-~~~~~~t~ee~~~l~~~l~~~~~wL~~~~------------~~~~~~~~~kl~eL~~ 603 (653)
T PTZ00009 537 RVEAKNGLENYCYSMKNTLQDE-KVKGKLSDSDKATIEKAIDEALEWLEKNQ------------LAEKEEFEHKQKEVES 603 (653)
T ss_pred HHHHHhhhHHHHHHHHHHHhhh-hhhccCCHHHHHHHHHHHHHHHHHHhcCC------------chhHHHHHHHHHHHHH
Confidence 3346677777788888777431 12245899999999999999999997421 1245799999999999
Q ss_pred HhHhhhcCCC
Q 003290 765 FCRPIMTKPK 774 (833)
Q Consensus 765 ~~~~l~~k~k 774 (833)
.+.+++.+..
T Consensus 604 ~~~pi~~r~~ 613 (653)
T PTZ00009 604 VCNPIMTKMY 613 (653)
T ss_pred HHHHHHHHHH
Confidence 9999987643
No 117
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=87.47 E-value=25 Score=38.38 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHh---CCCCCCC---CCchhHHHhHHH
Q 003290 314 VKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFF---GKEPRRT---MNASECVARGCA 374 (833)
Q Consensus 314 i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~f---g~~~~~~---~npdeava~Gaa 374 (833)
+...+..+++.. .++.|+|.||......+++.|.+.+ +.++..+ .-.|.++++|++
T Consensus 247 l~~~~~~~~~~~-----~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 247 LVEKTKRALKKT-----GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred HHHHHHHHHHHh-----CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 334444455443 4678999999999999999999987 4333322 246788888876
No 118
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=87.42 E-value=1.1 Score=52.23 Aligned_cols=80 Identities=19% Similarity=0.414 Sum_probs=60.4
Q ss_pred hhhcchHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHH
Q 003290 681 EFTDRSSVIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAE 760 (833)
Q Consensus 681 e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~ 760 (833)
....|-++-.+|.+.+.+++..++... ..+.++++.++.+.|+++..||+...... ..+++.|++
T Consensus 535 ~~~~~v~~~~~le~~~f~~~~~~~~~~---~~i~~~~~~~~~~~~~~~i~wl~~~~~~~------------~~e~e~k~~ 599 (620)
T KOG0101|consen 535 KQKDKVAAKNSLESYAFNMKATVEDEK---GKINEEDKQKILDKCNEVINWLDKNQLAE------------KEEFEHKQK 599 (620)
T ss_pred HHHHHHHHHhhHHHHHHhhhhhhhhhc---cccChhhhhhHHHHHHHHHHHhhhccccc------------ccHHHHHHH
Confidence 334445555566666666666654433 57899999999999999999998655433 368999999
Q ss_pred HHHHHhHhhhcCCCC
Q 003290 761 ALDRFCRPIMTKPKP 775 (833)
Q Consensus 761 ~l~~~~~~l~~k~kp 775 (833)
+|+..|++++.+..-
T Consensus 600 el~~~~~p~~~~~~~ 614 (620)
T KOG0101|consen 600 ELELVCNPIISKLYQ 614 (620)
T ss_pred HHHhhccHHHHhhhc
Confidence 999999999987553
No 119
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=87.36 E-value=2.3 Score=51.43 Aligned_cols=70 Identities=13% Similarity=0.124 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHH
Q 003290 686 SSVIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRF 765 (833)
Q Consensus 686 p~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~ 765 (833)
-++.+.|...|..++..+.. -...+++++++.+.+.+++++.||.+. ...+++.+.++|+..
T Consensus 567 ~eakN~lEs~iy~~r~~l~e---~~~~~s~~ere~i~~~l~~~~~WL~~~---------------d~~~i~~k~~eL~~~ 628 (663)
T PTZ00400 567 VDAKNEAETLIYSVEKQLSD---LKDKISDADKDELKQKITKLRSTLSSE---------------DVDSIKDKTKQLQEA 628 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHH
Confidence 34566666667777666642 224589999999999999999999752 147899999999999
Q ss_pred hHhhhcCC
Q 003290 766 CRPIMTKP 773 (833)
Q Consensus 766 ~~~l~~k~ 773 (833)
+.+++.|.
T Consensus 629 l~~l~~k~ 636 (663)
T PTZ00400 629 SWKISQQA 636 (663)
T ss_pred HHHHHHHH
Confidence 99999753
No 120
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=87.12 E-value=2 Score=51.48 Aligned_cols=68 Identities=12% Similarity=0.149 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHh
Q 003290 687 SVIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFC 766 (833)
Q Consensus 687 ~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~ 766 (833)
++.+.|...|..++..+... ...+++++++++.+.+++++.||+.. ...+++.+.++|+..+
T Consensus 525 e~kn~lEs~iy~~r~~l~~~---~~~~~~~e~~~l~~~l~~~~~wL~~~---------------d~~~i~~~~~~l~~~~ 586 (595)
T TIGR02350 525 EARNNADSLAYQAEKTLKEA---GDKLPAEEKEKIEKAVAELKEALKGE---------------DVEEIKAKTEELQQAL 586 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHh---hccCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHHH
Confidence 45667777777777777431 34589999999999999999999853 1258999999999999
Q ss_pred HhhhcC
Q 003290 767 RPIMTK 772 (833)
Q Consensus 767 ~~l~~k 772 (833)
++++.|
T Consensus 587 ~~~~~~ 592 (595)
T TIGR02350 587 QKLAEA 592 (595)
T ss_pred HHHHHH
Confidence 998764
No 121
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=86.96 E-value=72 Score=37.64 Aligned_cols=63 Identities=19% Similarity=0.132 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHh---CCCCCCCC---CchhHHHhHHHHhchhhc
Q 003290 314 VKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFF---GKEPRRTM---NASECVARGCALQCAILS 381 (833)
Q Consensus 314 i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~f---g~~~~~~~---npdeava~Gaa~~aa~ls 381 (833)
+...+.++++..+ +..|+|+||.....++++.|.+.+ |.++..+. -.|.++++|++.+....+
T Consensus 233 l~~~~~~~~~~~g-----~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~ 301 (535)
T PRK09605 233 LTEVTERALAHTG-----KDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKA 301 (535)
T ss_pred HHHHHHHHHHHhC-----CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHc
Confidence 3344444444433 567999999999999999999665 43443332 578899999887654443
No 122
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=86.85 E-value=67 Score=37.22 Aligned_cols=210 Identities=17% Similarity=0.103 Sum_probs=104.3
Q ss_pred HcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCC-cccHHHHHHHHH
Q 003290 162 IAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRS-VGGRDFDEVLFQ 240 (833)
Q Consensus 162 ~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~-lGG~~~D~~l~~ 240 (833)
.-++++--+..|...+=.+++.+.+.+ ...-|+++|-.|--...++....++.+.++....+.. ||.- .. .|..
T Consensus 109 ~~~~~~kv~~~eHH~aHAasAf~~SpF---~~a~vl~iDg~Gd~~s~~~~~~~~~~~~~i~~~~~~~SLG~f-Y~-~~T~ 183 (555)
T COG2192 109 GKGLPVKVLFVEHHLAHAASAFFTSPF---EEALVLTIDGAGDGLSTSVWHGRNGQLTPIAQSRGIDSLGLF-YA-AFTE 183 (555)
T ss_pred cccCccceeechHHHHHHHHHhcCCCc---ccceEEEEeccCCceEEEEEeccCCeeEEEEeecCcchHHHH-HH-HHHH
Confidence 345663334444433322333333333 2478999998887777777777778887777655444 4422 21 4433
Q ss_pred HHHHHHH-hhhc---cCccCCHHHHHHHHHHHHHHhhh-cCC-CC-----ceeEEEeccccC-----ccceEEecHHHHH
Q 003290 241 HFAAKFK-EEYK---IDVSQNARASLRLRVACEKLKKV-LSA-NP-----EAPLNIECLMEE-----KDVRGFIKRDEFE 304 (833)
Q Consensus 241 ~l~~~~~-~k~~---~~~~~~~~~~~rL~~~aek~K~~-LS~-~~-----~~~~~ie~l~~~-----~d~~~~itr~efe 304 (833)
++--+-. ..++ +-.-..|.....++..... |.. +.. +. ...+..-++... ..-..+..-.+|-
T Consensus 184 ~lGf~~n~~EgKvMgLAaYG~p~y~~~~~d~l~~-~~~~~~~i~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~diA 262 (555)
T COG2192 184 LLGFKPNSDEGKVMGLAAYGDPNYDLSLLDLLRE-KEDGLFVINGELLKRLARLGTFSLLGALKRRLPESPSTERAADIA 262 (555)
T ss_pred HhCCCCCCCCccEEEeeccCCcccchHHHHHHhh-ccccceeccHHHHHhccccceeccccccccccccccccccHHHHH
Confidence 3321100 0111 1111222211222222222 100 000 00 000000001111 0112334455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHH-HHHHHHhCCCCCCCCC-chhHHHhHHHHhchhhc
Q 003290 305 QISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAII-KILTEFFGKEPRRTMN-ASECVARGCALQCAILS 381 (833)
Q Consensus 305 ~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~-~~l~~~fg~~~~~~~n-pdeava~Gaa~~aa~ls 381 (833)
..++..++++.-.+-+-+.+... ...+.+.||....-..- .+|.+.+..++..... .|.-.|.|||+++....
T Consensus 263 asaQ~~lE~l~l~~~~~~~~~~g----~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~AvGAAl~~~~~~ 337 (555)
T COG2192 263 ASAQAYLEELVLEMLRYLREETG----EDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAVGAALAVKREL 337 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC----ccceEEccceeeeeeehHhHhhcccCceeEecCCCCCcchHHHHHHHHHHHh
Confidence 67777777776666665555321 56799999998766655 6777766666655444 45668999999886543
No 123
>PLN03184 chloroplast Hsp70; Provisional
Probab=85.85 E-value=4.3 Score=49.20 Aligned_cols=68 Identities=12% Similarity=0.055 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHh
Q 003290 687 SVIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFC 766 (833)
Q Consensus 687 ~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~ 766 (833)
++.+.+...|..++..+.. -...+++++++.+.+.+++++.||... + ..+++.+.++|...+
T Consensus 566 eakN~lE~~iy~~r~~l~e---~~~~~~~eer~~l~~~l~~~e~wL~~~-----------d----~~~ik~~~~~l~~~l 627 (673)
T PLN03184 566 DTKNQADSVVYQTEKQLKE---LGDKVPADVKEKVEAKLKELKDAIASG-----------S----TQKMKDAMAALNQEV 627 (673)
T ss_pred HHHHhHHHHHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHHhcC-----------C----HHHHHHHHHHHHHHH
Confidence 3555566666666666631 223579999999999999999999742 1 257888888888888
Q ss_pred HhhhcC
Q 003290 767 RPIMTK 772 (833)
Q Consensus 767 ~~l~~k 772 (833)
+++..+
T Consensus 628 ~~l~~~ 633 (673)
T PLN03184 628 MQIGQS 633 (673)
T ss_pred HHHHHH
Confidence 888764
No 124
>PRK13411 molecular chaperone DnaK; Provisional
Probab=84.81 E-value=3.7 Score=49.63 Aligned_cols=71 Identities=15% Similarity=0.175 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHH
Q 003290 686 SSVIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRF 765 (833)
Q Consensus 686 p~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~ 765 (833)
-++.+.+...|..++..+... ...++++++..+.+.+++++.||.+ +. ....+++.++++|+..
T Consensus 528 ~eakN~lEs~iy~~r~~l~~~---~~~~~~~er~~i~~~l~~~~~wL~~----~~---------~~~~~~~~~~~el~~~ 591 (653)
T PRK13411 528 IELKNQADSLLYSYESTLKEN---GELISEELKQRAEQKVEQLEAALTD----PN---------ISLEELKQQLEEFQQA 591 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---hccCCHHHHHHHHHHHHHHHHHHhc----CC---------CCHHHHHHHHHHHHHH
Confidence 346677777777777777531 3568999999999999999999974 11 2447899999999999
Q ss_pred hHhhhcC
Q 003290 766 CRPIMTK 772 (833)
Q Consensus 766 ~~~l~~k 772 (833)
+.++..+
T Consensus 592 ~~~i~~~ 598 (653)
T PRK13411 592 LLAIGAE 598 (653)
T ss_pred HHHHHHH
Confidence 9998864
No 125
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=84.13 E-value=2.6 Score=46.76 Aligned_cols=71 Identities=23% Similarity=0.199 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCC-CC------CCCCCchhHHHhHHHHh
Q 003290 304 EQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGK-EP------RRTMNASECVARGCALQ 376 (833)
Q Consensus 304 e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~-~~------~~~~npdeava~Gaa~~ 376 (833)
++++.-+..-+...|.+.++... .+++.|+++||+.+-|.+-+.|++.++. ++ ..+.+.-||++ -|++
T Consensus 260 ~D~~aTlt~~TA~sI~~~i~~~~---~~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~a--FA~L 334 (364)
T PF03702_consen 260 EDILATLTEFTAQSIADAIRRFP---PQPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMA--FAWL 334 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----TT-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC---CCCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHH--HHHH
Confidence 44445555555555556666543 2388999999999999999999999963 33 23334555554 4555
Q ss_pred chh
Q 003290 377 CAI 379 (833)
Q Consensus 377 aa~ 379 (833)
|..
T Consensus 335 a~~ 337 (364)
T PF03702_consen 335 AYR 337 (364)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 126
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=84.12 E-value=0.89 Score=40.05 Aligned_cols=21 Identities=33% Similarity=0.445 Sum_probs=18.5
Q ss_pred CeEEEEEcCccceEEEEEECC
Q 003290 1 MSVVGFDLGNESCIVAVARQR 21 (833)
Q Consensus 1 m~viGID~GTt~s~va~~~~~ 21 (833)
|.++|||+|.|++++|++...
T Consensus 1 ~~ilgiD~Ggt~i~~a~~d~~ 21 (99)
T smart00732 1 KRVLGLDPGRKGIGVAVVDET 21 (99)
T ss_pred CcEEEEccCCCeEEEEEECCC
Confidence 789999999999999998643
No 127
>PRK14878 UGMP family protein; Provisional
Probab=82.80 E-value=79 Score=34.62 Aligned_cols=40 Identities=13% Similarity=-0.002 Sum_probs=29.1
Q ss_pred ccEEEEeCCCCChHHHHHHHHHHh---CCCCCCCC---CchhHHHh
Q 003290 332 VHMVEVVGSSSRVPAIIKILTEFF---GKEPRRTM---NASECVAR 371 (833)
Q Consensus 332 i~~ViLvGG~sriP~v~~~l~~~f---g~~~~~~~---npdeava~ 371 (833)
+..|+|+||.....++++.|.+.+ |.++..+. -.|.++.+
T Consensus 242 ~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~~~~D~GimI 287 (323)
T PRK14878 242 KKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVPPEYAGDNGAMI 287 (323)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCchHHHHH
Confidence 678999999999999999999977 44333222 34555555
No 128
>CHL00094 dnaK heat shock protein 70
Probab=82.75 E-value=5.3 Score=48.07 Aligned_cols=68 Identities=13% Similarity=0.085 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHh
Q 003290 687 SVIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFC 766 (833)
Q Consensus 687 ~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~ 766 (833)
++.+.+...|..++..+.. -...+++++++++.+.+++++.||.+. . ..+++.+.++|+..+
T Consensus 529 ~~kn~le~~i~~~~~~l~~---~~~~~~~~~~~~~~~~l~~~~~wl~~~----~-----------~~~~~~~~~~l~~~~ 590 (621)
T CHL00094 529 DLKNQAESLCYQAEKQLKE---LKDKISEEKKEKIENLIKKLRQALQND----N-----------YESIKSLLEELQKAL 590 (621)
T ss_pred HHHHHhHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHhcC----C-----------HHHHHHHHHHHHHHH
Confidence 3555666667666666642 224578999999999999999999852 1 168999999999999
Q ss_pred HhhhcC
Q 003290 767 RPIMTK 772 (833)
Q Consensus 767 ~~l~~k 772 (833)
++++.|
T Consensus 591 ~~~~~k 596 (621)
T CHL00094 591 MEIGKE 596 (621)
T ss_pred HHHHHH
Confidence 999864
No 129
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=82.55 E-value=4 Score=46.01 Aligned_cols=80 Identities=18% Similarity=0.300 Sum_probs=57.5
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHH----HcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHH
Q 003290 298 IKRDEFEQISAPILERVKRPLEKALA----ETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGC 373 (833)
Q Consensus 298 itr~efe~l~~~~~~~i~~~i~~~l~----~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Ga 373 (833)
.++++| ++..++.|.-...++++ +++. .+..+-+=||.++..++-+.+.+.+|.++.++.+ .|..|+||
T Consensus 371 t~~~hi---~RA~LEsiayQ~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~-~EtTAlGa 443 (499)
T COG0554 371 TTKAHI---ARATLESIAYQTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADILGVPVERPVV-LETTALGA 443 (499)
T ss_pred CCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCC---CceeEEEcCccccchhHHHHHHHHhCCeeecccc-chhhHHHH
Confidence 345444 44444444444444443 3443 5788889999999999999999999999988765 56789999
Q ss_pred HHhchhhcCCC
Q 003290 374 ALQCAILSPTF 384 (833)
Q Consensus 374 a~~aa~ls~~~ 384 (833)
|+.|..-.+..
T Consensus 444 A~lAGla~G~w 454 (499)
T COG0554 444 AYLAGLAVGFW 454 (499)
T ss_pred HHHHhhhhCcC
Confidence 99998776643
No 130
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=81.35 E-value=15 Score=40.13 Aligned_cols=165 Identities=13% Similarity=0.118 Sum_probs=88.3
Q ss_pred CceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHHHHHHHHHHhhhccCc--cCCHHHHHHHHHHHHH
Q 003290 193 QLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDV--SQNARASLRLRVACEK 270 (833)
Q Consensus 193 ~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~--~~~~~~~~rL~~~aek 270 (833)
+...+|+++|| ++-+.+-...-.|++. |.--|-.-+|..+..+..+.|.+.-..-- .-+.....+|+
T Consensus 162 ~~~r~vlNiGG----IaNlt~l~~~~~v~g~--DtGPgN~llD~wi~~~~g~~yD~~g~~A~~G~v~~~ll~~ll----- 230 (371)
T COG2377 162 RERRAVLNIGG----IANLTYLPPGGPVLGF--DTGPGNMLLDAWIQAHGGKPYDKDGAWAASGKVDEALLARLL----- 230 (371)
T ss_pred CCCeEEEeccc----eEEEEecCCCCceeee--ecCCcchHHHHHHHHhhCCCcCcCcchhhcCCcCHHHHHHHh-----
Confidence 57899999998 3433333322256655 56678888888888777655432110000 01122223332
Q ss_pred HhhhcCCCCceeEEEeccccCccceEE-----------ecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeC
Q 003290 271 LKKVLSANPEAPLNIECLMEEKDVRGF-----------IKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVG 339 (833)
Q Consensus 271 ~K~~LS~~~~~~~~ie~l~~~~d~~~~-----------itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvG 339 (833)
...-|+...- ...+-.+|... ++.+++......+. . ..+++....-..+.+..+++|
T Consensus 231 ~~p~F~~~~P------kStgRe~F~~~wl~~~~~~~~~l~a~Dv~aTL~elt---A---~tIv~s~~~~~~~p~~l~vcG 298 (371)
T COG2377 231 AHPYFALPAP------KSTGRELFNLQWLEQHLDDTQLLNAEDVQATLVELT---A---ATIVKSVATLQGDPRRLVVCG 298 (371)
T ss_pred hCCcccCCCc------ccCCccccchhhHHHHHhhccCCCHHHHHHHHHHHH---H---HHHHHHHhhccCCCceeEeec
Confidence 2233322211 11111222221 23333322222221 1 122233333445678999999
Q ss_pred CCCChHHHHHHHHHHh-CCCCC----CCCCchhHHHhHHHHhchhh
Q 003290 340 SSSRVPAIIKILTEFF-GKEPR----RTMNASECVARGCALQCAIL 380 (833)
Q Consensus 340 G~sriP~v~~~l~~~f-g~~~~----~~~npdeava~Gaa~~aa~l 380 (833)
|+.+.|.+.+.|...+ |..|. -.+++|..=|.+-|+.|...
T Consensus 299 GG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 299 GGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred CCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 9999999999999999 54443 25677777777778777643
No 131
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=81.11 E-value=1.6 Score=41.26 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=19.1
Q ss_pred CeEEEEEcCccceEEEEEECCc
Q 003290 1 MSVVGFDLGNESCIVAVARQRG 22 (833)
Q Consensus 1 m~viGID~GTt~s~va~~~~~~ 22 (833)
|.++|||+|+..+.+|+.++..
T Consensus 1 mriL~lD~G~kriGiAvsd~~~ 22 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSDPLG 22 (135)
T ss_dssp -EEEEEEECSSEEEEEEEETTT
T ss_pred CeEEEEEeCCCeEEEEEecCCC
Confidence 8999999999999999988653
No 132
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=80.69 E-value=6.7 Score=46.34 Aligned_cols=60 Identities=13% Similarity=0.218 Sum_probs=48.6
Q ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHhhcCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHH
Q 003290 675 IEERYKEFTDRSSVIDQLAYCINSYREAALSSDPKFDH-IDIAEKQKVLNECADAEAWVREKK 736 (833)
Q Consensus 675 i~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~~-~~~~e~~~v~~~~~~~~~Wl~~~~ 736 (833)
+..+=.+..+|.+|.+.|...|..++..+.. +.|.. -+++|+..|.+.+.....||.+-.
T Consensus 649 ~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d--~ey~e~at~EEk~~L~~~~~~~~~Wleed~ 709 (902)
T KOG0104|consen 649 FVQKEKEKSEREEASNELEAFLFELQDKLDD--DEYAEVATEEEKKILKKKVSLLMDWLEEDG 709 (902)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC--chHhhhcCHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445567778899999999999888877755 44543 679999999999999999999877
No 133
>PTZ00107 hexokinase; Provisional
Probab=80.32 E-value=90 Score=36.02 Aligned_cols=80 Identities=14% Similarity=0.170 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHcCCCCCCccEEEEeCCC--CChHHHHHHHHHHhC----CC--CCCCCCchh
Q 003290 300 RDEFEQISAPILERVKRPLEK----ALAETGLSVEDVHMVEVVGSS--SRVPAIIKILTEFFG----KE--PRRTMNASE 367 (833)
Q Consensus 300 r~efe~l~~~~~~~i~~~i~~----~l~~~~~~~~~i~~ViLvGG~--sriP~v~~~l~~~fg----~~--~~~~~npde 367 (833)
+.-+..+|.-+..|...++.- ++.+.+.. .-..+|-+-|+ -..|.+++.+.+.+. .. ...-.-.+.
T Consensus 370 ~~~lr~i~~~V~~RAA~L~Aa~iaail~k~~~~--~~~~~VgvDGSv~~~~p~f~~~~~~~l~~ll~~~~~~v~l~~a~D 447 (464)
T PTZ00107 370 LYTIRKICELVRGRAAQLAAAFIAAPAKKTRTV--QGKATVAIDGSVYVKNPWFRRLLQEYINSILGPDAGNVVFYLADD 447 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCceEEEEeCcceecCccHHHHHHHHHHHHhCCCCCcEEEEEccC
Confidence 444556666666666555433 33333321 12244444454 347777777777663 22 112224566
Q ss_pred HHHhHHHHhchhhc
Q 003290 368 CVARGCALQCAILS 381 (833)
Q Consensus 368 ava~Gaa~~aa~ls 381 (833)
..-+|||+.||...
T Consensus 448 GSg~GAAl~AA~~~ 461 (464)
T PTZ00107 448 GSGKGAAIIAAMVA 461 (464)
T ss_pred chHHHHHHHHHHhc
Confidence 78899999998764
No 134
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=80.30 E-value=14 Score=38.48 Aligned_cols=97 Identities=19% Similarity=0.276 Sum_probs=58.4
Q ss_pred CCCcCcEEE--EecCccCHHHHHHHHHHHHHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEE
Q 003290 134 NAAVVDCCI--GIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIA 211 (833)
Q Consensus 134 ~~~~~~~VI--TVP~~f~~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv 211 (833)
+..+...+. .+|.+|+.. +++++++.-.|.+. ++-++-+||+.=++..... .....++++|+|-|+|-+.++
T Consensus 111 g~~~~~~~y~~~~P~~~TRm--~av~~~~~~~~~~~--~vmDTg~AAvlGal~d~~v--~~~~~~~~vniGN~HTlaa~v 184 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTRM--RAVRESLGGAGYDE--VVMDTGPAAVLGALCDPEV--SSREGIIVVNIGNGHTLAALV 184 (254)
T ss_pred CCCHHHeeecCCCcHHHHHH--HHHHHHhccCCCCc--eEecCHHHHHhhhhcChhh--hccCCeEEEEeCCccEEEEEE
Confidence 556778888 899998744 45666666666665 4444445554322221111 135789999999999988887
Q ss_pred EEeCCeEEEEEeeCCCCcccHHHHHHH
Q 003290 212 GFKKGQLKILGHSFDRSVGGRDFDEVL 238 (833)
Q Consensus 212 ~~~~~~~~vl~~~~d~~lGG~~~D~~l 238 (833)
.++.+.=+.......+-...+...|
T Consensus 185 --~~~rI~GvfEHHT~~l~~~kL~~~l 209 (254)
T PF08735_consen 185 --KDGRIYGVFEHHTGMLTPEKLEEYL 209 (254)
T ss_pred --eCCEEEEEEecccCCCCHHHHHHHH
Confidence 4444444444444555555444444
No 135
>PLN02939 transferase, transferring glycosyl groups
Probab=78.95 E-value=58 Score=40.68 Aligned_cols=180 Identities=12% Similarity=0.120 Sum_probs=114.5
Q ss_pred CCHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccCCHHHHHHHHHHHHHHHHHhhhcCCCC
Q 003290 579 MLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYVYDMRNKLCD--KYQDFVTDSERELFTSKLQETEDWLYEDGEDE 656 (833)
Q Consensus 579 ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~L~~--~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a 656 (833)
+-+++++.++.++.+.+.-|+.....+.-+.-|++++-++..++.. .-...+++-+.+.+-++++.+..-|+.-...+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (977)
T PLN02939 237 LLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQV 316 (977)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888899999999999999999999999999999988842 11223344444456666666666665321111
Q ss_pred C-HHHHHHHHHHHHhccchHH---HHHHhhhcchHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 003290 657 T-KGVYVAKLEELKKQGDPIE---ERYKEFTDRSSVIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWV 732 (833)
Q Consensus 657 ~-~~~~~~kl~~L~~~~~pi~---~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl 732 (833)
+ .-..-++-++|++.++.+. .+..-++.|+..++.+++.+...+..+...+... ...++--...++++++-|
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 392 (977)
T PLN02939 317 EKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEI----HSYIQLYQESIKEFQDTL 392 (977)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHHHHHHHHH
Confidence 1 1112233344444444443 4455667888999888888887777664433221 344555566677777778
Q ss_pred HHHHHHhhc----CCCCCCCcccHHHHHHHHHHH
Q 003290 733 REKKQQQDA----LPKYAAPVLLLGDVRRKAEAL 762 (833)
Q Consensus 733 ~~~~~~q~~----~~~~~dP~~~~~di~~k~~~l 762 (833)
+....++.+ .|.++.|.-.|++|.-+++.+
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~lll~id~~ 426 (977)
T PLN02939 393 SKLKEESKKRSLEHPADDMPSEFWSRILLLIDGW 426 (977)
T ss_pred HHHHhhhhcccccCchhhCCHHHHHHHHHHHHHH
Confidence 777777766 345666766677777666554
No 136
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=78.71 E-value=7.8 Score=38.93 Aligned_cols=10 Identities=0% Similarity=-0.081 Sum_probs=6.8
Q ss_pred HHHHHHHHHh
Q 003290 614 YVYDMRNKLC 623 (833)
Q Consensus 614 ~iy~~r~~L~ 623 (833)
++|.+++.|.
T Consensus 14 ~l~~v~~~iK 23 (205)
T PF12238_consen 14 ALKKVLDLIK 23 (205)
T ss_pred HHHHHHHHHc
Confidence 3477777775
No 137
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=77.74 E-value=9.1 Score=40.80 Aligned_cols=173 Identities=16% Similarity=0.148 Sum_probs=93.4
Q ss_pred echhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEE-----EEEeeCCCCcccHHHHHHHHHHHHHH
Q 003290 171 FHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLK-----ILGHSFDRSVGGRDFDEVLFQHFAAK 245 (833)
Q Consensus 171 i~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~-----vl~~~~d~~lGG~~~D~~l~~~l~~~ 245 (833)
+..|+=..++|..+... .-.+++|.|+-+-|..+.|- +|++. .++..|-.+ | .+|..++..+-..
T Consensus 129 ~aSpEKi~iay~a~~~~----~~~~~ivsDiSSNTVtlaVk---~GKIVggidaciGAPG~lh-G--pLDlE~ir~Id~g 198 (326)
T TIGR03281 129 IASPEKVSIAYNAYCLT----GFKDFIVSDISSNTVTLLIK---DGKIIGGFDACVGAPGVLH-G--PLDLEAIRNIDAG 198 (326)
T ss_pred cCCHHHHHHHHHHHHHc----CCCCEEEEecCCCeEEEEEE---CCEEEccccccccCccccc-C--cccHHHHHhcccC
Confidence 45677778888766532 13689999999888877663 33320 111111122 2 3444444332210
Q ss_pred HHhhhccCccCCHHHHHHHHHHHHHHhhhcCCCCceeEEEeccccCccceEEecHHHHHHHHHH---HHHHHHHHHHHHH
Q 003290 246 FKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAP---ILERVKRPLEKAL 322 (833)
Q Consensus 246 ~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~---~~~~i~~~i~~~l 322 (833)
.++ +-..||...- +.|-+++.+ ...+++||.+.+.. ....+..++.-+.
T Consensus 199 -------~~t---------------an~aFs~aGa--~kIa~~~~~----~~~~~eE~~~~~~~~e~~~lA~dal~~~va 250 (326)
T TIGR03281 199 -------KKT---------------ANEAFSHAGA--VKIACADKG----VENAKEEILNNYNGDEPGRLALDSLAMSVA 250 (326)
T ss_pred -------ccc---------------HHHHHhhcCe--eEEeccccc----ccCCHHHHHHHhccChhHHHHHHHHHHHHH
Confidence 010 1112322221 122222222 24678888776632 2222222222222
Q ss_pred HH-cCCCC--CCccEEEEeCC--CCChH-HHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhhcCC
Q 003290 323 AE-TGLSV--EDVHMVEVVGS--SSRVP-AIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPT 383 (833)
Q Consensus 323 ~~-~~~~~--~~i~~ViLvGG--~sriP-~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ls~~ 383 (833)
.. +.+.. .....|+|.|- ++|.| .|++.|++.|..++. .+.. .+.|.|+|+.|.-+.+.
T Consensus 251 meIasLl~l~~~~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~-~L~~-ksAA~G~AiIA~dI~gG 315 (326)
T TIGR03281 251 MEIASLGLLDCKEAGVVLAGSGGTLREPINFSGKIKRVLSCKVL-VLDS-ESAAIGLALIAEDIFSG 315 (326)
T ss_pred HHHHhheeccCCCCcEEEeCcchhccCchHHHHHHHHHhCCCeE-Eecc-hhhhhhHHHHHHHHhCC
Confidence 21 12211 23458999988 99999 999999999986543 2333 78899999999877664
No 138
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=75.68 E-value=90 Score=37.75 Aligned_cols=50 Identities=10% Similarity=0.116 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCC-Ch-HHHHH-HHHHHh
Q 003290 306 ISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSS-RV-PAIIK-ILTEFF 355 (833)
Q Consensus 306 l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-ri-P~v~~-~l~~~f 355 (833)
++...++.+...+-..+...-....+.+.|+|-||-+ ++ +++.+ .+.+.|
T Consensus 244 ~A~~~~~~~~~~lg~~~~nl~~~~~~p~~vvigGGIs~~~~~~l~~~~f~~~f 296 (638)
T PRK14101 244 LALEAVECFCAILGTFAGNLALTLGALGGIYIGGGVVPKLGELFTRSSFRARF 296 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEeCcHHHHHHHHcChHHHHHHH
Confidence 3445555555555555544322333467888888887 32 55553 566666
No 139
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=74.61 E-value=11 Score=45.15 Aligned_cols=76 Identities=20% Similarity=0.366 Sum_probs=57.6
Q ss_pred HhhhcchHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHH
Q 003290 680 KEFTDRSSVIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKA 759 (833)
Q Consensus 680 ~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~ 759 (833)
.+...+-++.+.+.+.+...+..+... +..+++++. .+.+++...||.+....-. ..+++.|+
T Consensus 524 ~~~~~~~e~kn~lE~~i~~~r~~l~~~---~~~~~~~~~---~~~l~~~~~wl~~~~~~~~-----------~~e~~~kl 586 (602)
T PF00012_consen 524 EERRERAEAKNELESYIYELRDKLEED---KDFVSEEEK---KKKLKETSDWLEDNGEDAD-----------KEEYKEKL 586 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC---GGGSTHHHH---HHHHHHHHHHHHHHTTTSH-----------HHHHHHHH
T ss_pred hhhhhccccHHHHHHHHHHHHHHHHhh---hccCCHHHH---HHHHHHHHHHHHhhccCCC-----------HHHHHHHH
Confidence 334455566777888888888877554 556777777 7888888999998764322 57999999
Q ss_pred HHHHHHhHhhhcC
Q 003290 760 EALDRFCRPIMTK 772 (833)
Q Consensus 760 ~~l~~~~~~l~~k 772 (833)
++|++.++++..+
T Consensus 587 ~~L~~~~~~i~~r 599 (602)
T PF00012_consen 587 EELKKVIEPIKKR 599 (602)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998865
No 140
>PRK07058 acetate kinase; Provisional
Probab=74.45 E-value=20 Score=40.07 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCC-ChHHHHHHHHHHhC
Q 003290 306 ISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSS-RVPAIIKILTEFFG 356 (833)
Q Consensus 306 l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-riP~v~~~l~~~fg 356 (833)
.++-++.++.+.|-...... ..+|.|+++||-. ..+.|++.|.+.++
T Consensus 297 A~d~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 297 ALDLFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhhh
Confidence 44456666666665554443 3699999999999 99999999998764
No 141
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=74.14 E-value=15 Score=41.11 Aligned_cols=18 Identities=33% Similarity=0.469 Sum_probs=16.2
Q ss_pred eEEEEEcCccceEEEEEE
Q 003290 2 SVVGFDLGNESCIVAVAR 19 (833)
Q Consensus 2 ~viGID~GTt~s~va~~~ 19 (833)
.++.||||.||.++|++.
T Consensus 76 ~~LaiD~GGTnlRvc~V~ 93 (466)
T COG5026 76 SVLAIDLGGTNLRVCLVV 93 (466)
T ss_pred CEEEEecCCceEEEEEEE
Confidence 489999999999999875
No 142
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=72.73 E-value=1.6e+02 Score=32.59 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHh
Q 003290 311 LERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFF 355 (833)
Q Consensus 311 ~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~f 355 (833)
++-+.+.+.++++.. .+..|+++||-+...++|+.|++.+
T Consensus 248 ~~~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~~LR~~l~~~~ 287 (345)
T PTZ00340 248 FAMLVEVTERAMSHC-----GSNEVLIVGGVGCNLRLQEMMQQMA 287 (345)
T ss_pred HHHHHHHHHHHHHHh-----CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 344444445555543 4678999999999999999999987
No 143
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=72.64 E-value=4.8 Score=48.36 Aligned_cols=43 Identities=14% Similarity=0.099 Sum_probs=29.9
Q ss_pred ccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEE
Q 003290 166 HPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAG 212 (833)
Q Consensus 166 ~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~ 212 (833)
++..+.+-|.|-.+..+..... . .+ +++++||||.|||++++.
T Consensus 254 pv~tI~SGPAagvvGAa~ltg~-~--~g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 254 PVETILSGPAAGVVGAAYLTGL-K--AG-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred CeeeEeeccHHHHHHHHHhccc-c--cC-CEEEEEcCCcceeeeeee
Confidence 3445677777777666543111 1 13 599999999999999986
No 144
>PLN02596 hexokinase-like
Probab=72.28 E-value=2e+02 Score=33.50 Aligned_cols=82 Identities=17% Similarity=0.189 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHcCCCCCCccEEEEeCCCC--ChHHHHHHHH----HHhCCCCCCCC---Cch
Q 003290 300 RDEFEQISAPILERVKRPLE----KALAETGLSVEDVHMVEVVGSSS--RVPAIIKILT----EFFGKEPRRTM---NAS 366 (833)
Q Consensus 300 r~efe~l~~~~~~~i~~~i~----~~l~~~~~~~~~i~~ViLvGG~s--riP~v~~~l~----~~fg~~~~~~~---npd 366 (833)
+.-+..+|.-+..|...++- .+|...+-. ..-..+|-|-|+- ..|.+++.+. +.+|......+ -.+
T Consensus 392 ~~~lr~i~~~V~~RAArL~Aa~iaail~k~g~~-~~~~~~VavDGSvye~~p~f~~~l~~al~ellg~~~~~~i~~~~s~ 470 (490)
T PLN02596 392 REVVAEVCDIVAERGARLAGAGIVGIIKKLGRI-ENKKSVVTVEGGLYEHYRVFRNYLHSSVWEMLGSELSDNVVIEHSH 470 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCceEEEEeCcceeeCcCHHHHHHHHHHHHhCcccCCcEEEEEcc
Confidence 34445555555555544433 333443311 1123566666664 3555555554 44553221111 234
Q ss_pred hHHHhHHHHhchhhcC
Q 003290 367 ECVARGCALQCAILSP 382 (833)
Q Consensus 367 eava~Gaa~~aa~ls~ 382 (833)
.--.+|||+.||..|.
T Consensus 471 DGSG~GAAl~AA~~~~ 486 (490)
T PLN02596 471 GGSGAGALFLAACQTG 486 (490)
T ss_pred CchhHHHHHHHHhhcc
Confidence 4568999999998875
No 145
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=72.24 E-value=1.5e+02 Score=32.46 Aligned_cols=51 Identities=22% Similarity=0.379 Sum_probs=37.8
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHh
Q 003290 300 RDEFEQISA----PILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFF 355 (833)
Q Consensus 300 r~efe~l~~----~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~f 355 (833)
.++.+++|. -.++-+....+++|+..+ ++.++++||-+....+|+++.+..
T Consensus 231 ~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~ 285 (342)
T COG0533 231 EEDKEDIAASFQEAVFDMLVEKTERALKHTG-----KKELVIAGGVAANSRLREMLEEMC 285 (342)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHH
Confidence 444555554 345666666677777755 466999999999999999998876
No 146
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=71.97 E-value=15 Score=40.79 Aligned_cols=75 Identities=16% Similarity=0.236 Sum_probs=44.1
Q ss_pred eeeCHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCccCHHHHHHHHHHHHHcCCccEEeec---hhHH--HHHHHhhh
Q 003290 110 RVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFH---ETTA--TALAYGIY 184 (833)
Q Consensus 110 ~~~~~eel~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~~Aa~~AGl~~~~li~---EptA--aAl~y~~~ 184 (833)
..+.+.+-...+|+.+++..+...--++.. +.+.+|+ |..- ..++|.+.
T Consensus 152 LRlL~~~ka~~IL~aVre~l~~~s~f~v~~--------------------------d~VsIm~GtdEGv~aWiTiN~Llg 205 (453)
T KOG1385|consen 152 LRLLPGSKADNILQAVRELLKNDSPFPVVE--------------------------DAVSIMDGTDEGVYAWITINYLLG 205 (453)
T ss_pred cccCChhHHHHHHHHHHHHHhccCCccccC--------------------------CceeeccCcccceeeeeehhhhhc
Confidence 457778888999999988765322212111 1122222 2111 13556554
Q ss_pred cCCCCCCCCceEEEEEeCCceEEEEEEE
Q 003290 185 KTDLPENDQLNVAFVDIGHASLQVCIAG 212 (833)
Q Consensus 185 ~~~~~~~~~~~vlv~D~Gggt~dvsvv~ 212 (833)
.. .......|.++|+|||+|+++..-
T Consensus 206 ~L--~~~~~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 206 TL--GAPGHRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred cc--CCCCCCceEEEEcCCceEEEEEec
Confidence 32 212357899999999999999764
No 147
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=70.74 E-value=14 Score=44.19 Aligned_cols=74 Identities=9% Similarity=-0.007 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHH-HHHHh
Q 003290 688 VIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEA-LDRFC 766 (833)
Q Consensus 688 a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~-l~~~~ 766 (833)
+..++...+..++..+.. .-.+++.++++.+...+++++.||+..-...- -=...+++..++. |++.|
T Consensus 510 ~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 578 (595)
T PRK01433 510 AVIEAEALIFNIERAIAE---LTTLLSESEISIINSLLDNIKEAVHARDIILI--------NNSIKEFKSKIKKSMDTKL 578 (595)
T ss_pred HHHHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhcCCHHHH--------HHHHHHHHHHHHHHHHHHh
Confidence 344455566666655533 12357899999999999999999963210000 0012355555555 66666
Q ss_pred HhhhcC
Q 003290 767 RPIMTK 772 (833)
Q Consensus 767 ~~l~~k 772 (833)
+++++|
T Consensus 579 ~~~~~k 584 (595)
T PRK01433 579 NIIIND 584 (595)
T ss_pred hHHHHH
Confidence 666654
No 148
>PLN02920 pantothenate kinase 1
Probab=70.16 E-value=47 Score=37.08 Aligned_cols=49 Identities=8% Similarity=-0.067 Sum_probs=35.2
Q ss_pred CCccEEEEeCCCCChH-HHHHHHHHH---hC---CCCCCCCCchhHHHhHHHHhch
Q 003290 330 EDVHMVEVVGSSSRVP-AIIKILTEF---FG---KEPRRTMNASECVARGCALQCA 378 (833)
Q Consensus 330 ~~i~~ViLvGG~sriP-~v~~~l~~~---fg---~~~~~~~npdeava~Gaa~~aa 378 (833)
..++.|+++|+..|.+ ...+.|.-. +. .+....-+....-|+||.+...
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~~ 351 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSYE 351 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhcc
Confidence 4688999999999998 666644433 32 3445555777899999987654
No 149
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=68.86 E-value=4.4 Score=42.39 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=16.9
Q ss_pred EEEEEcCccceEEEEEECC
Q 003290 3 VVGFDLGNESCIVAVARQR 21 (833)
Q Consensus 3 viGID~GTt~s~va~~~~~ 21 (833)
++|||+|||++++++++..
T Consensus 2 ~lgiDiGTts~K~~l~d~~ 20 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDED 20 (245)
T ss_dssp EEEEEECSSEEEEEEEETT
T ss_pred EEEEEEcccceEEEEEeCC
Confidence 7999999999999998743
No 150
>PRK00976 hypothetical protein; Provisional
Probab=68.57 E-value=17 Score=39.42 Aligned_cols=50 Identities=20% Similarity=0.189 Sum_probs=38.6
Q ss_pred CccEEEEeCCCCChH--HHHHHHHHHhCCCCCCCCCchhHHHhHHHHhchhhcC
Q 003290 331 DVHMVEVVGSSSRVP--AIIKILTEFFGKEPRRTMNASECVARGCALQCAILSP 382 (833)
Q Consensus 331 ~i~~ViLvGG~sriP--~v~~~l~~~fg~~~~~~~npdeava~Gaa~~aa~ls~ 382 (833)
+++.|+|-||.++.+ .+.+.|++.+...+ ..-...+.++|||+.|..+.+
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~~~--a~LG~dAGaiGAA~iA~~i~~ 314 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDKKV--LVLGKESAAIGLALIARDIFN 314 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhcccc--cccCCchHHHHHHHHHHHHhC
Confidence 578899999999998 78888888885432 223458999999998876644
No 151
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=68.06 E-value=14 Score=29.40 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=30.5
Q ss_pred HHhcCCCcCcEEEEecCccCHHHHHHHHHHHHHcCCccE
Q 003290 130 ESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPL 168 (833)
Q Consensus 130 e~~~~~~~~~~VITVP~~f~~~qR~al~~Aa~~AGl~~~ 168 (833)
+.+.... ...++.|+.++..+|..+.+.|...||..-
T Consensus 9 ~~F~~~~--~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s~ 45 (59)
T cd06007 9 EDFRASD--NEEYEFPSSLTNHERAVIHRLCRKLGLKSK 45 (59)
T ss_pred HHHHcCc--ccEEEcCCCCCHHHHHHHHHHHHHcCCCce
Confidence 3444433 688999999999999999999999999753
No 152
>PLN02362 hexokinase
Probab=67.80 E-value=22 Score=41.40 Aligned_cols=31 Identities=16% Similarity=0.101 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcC--CccEEeechhHHHHHHHhh
Q 003290 153 RRAVIDAATIAG--LHPLRLFHETTATALAYGI 183 (833)
Q Consensus 153 R~al~~Aa~~AG--l~~~~li~EptAaAl~y~~ 183 (833)
.+.|.+|...-| ++++.|||+.++..++.++
T Consensus 208 v~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY 240 (509)
T PLN02362 208 AECLQGALNRRGLDMRVAALVNDTVGTLALGHY 240 (509)
T ss_pred HHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhc
Confidence 444455554445 4578899999998877544
No 153
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=67.70 E-value=5 Score=38.07 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.6
Q ss_pred CeEEEEEcCccceEEEEEECC
Q 003290 1 MSVVGFDLGNESCIVAVARQR 21 (833)
Q Consensus 1 m~viGID~GTt~s~va~~~~~ 21 (833)
|.++|||+|+..+.+|+.++.
T Consensus 4 ~~iLalD~G~kriGvAv~d~~ 24 (138)
T PRK00109 4 GRILGLDVGTKRIGVAVSDPL 24 (138)
T ss_pred CcEEEEEeCCCEEEEEEecCC
Confidence 679999999999999997653
No 154
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=67.16 E-value=73 Score=34.52 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=27.1
Q ss_pred cCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCc
Q 003290 163 AGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHA 204 (833)
Q Consensus 163 AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Ggg 204 (833)
.|++ +.+-|+..|+|++..+.... ....+++++-+|-|
T Consensus 106 ~~~P-v~veNDan~aalaE~~~g~~---~~~~~~~~i~~gtG 143 (314)
T COG1940 106 LGLP-VFVENDANAAALAEAWFGAG---RGIDDVVYITLGTG 143 (314)
T ss_pred HCCC-EEEecHHHHHHHHHHHhCCC---CCCCCEEEEEEccc
Confidence 4666 58999999999988765432 12457888888765
No 155
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=66.02 E-value=5.8 Score=37.61 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.1
Q ss_pred CeEEEEEcCccceEEEEEECCc
Q 003290 1 MSVVGFDLGNESCIVAVARQRG 22 (833)
Q Consensus 1 m~viGID~GTt~s~va~~~~~~ 22 (833)
|.++|||||+-.+.||+....+
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~~ 23 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDILG 23 (141)
T ss_pred ceEEEEecCCceEEEEEecCCC
Confidence 7899999999999999976543
No 156
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=65.51 E-value=1.8e+02 Score=30.50 Aligned_cols=92 Identities=14% Similarity=0.204 Sum_probs=55.8
Q ss_pred ecCccCHHHHHHHHHHHHHcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEe
Q 003290 144 IPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGH 223 (833)
Q Consensus 144 VP~~f~~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~ 223 (833)
+|.+|+.. |.+...| ..+|-. .-+++.-.||+....+.-. ....||+|+|-|++..+++ ..+.+.-+..
T Consensus 186 iPe~FtRM-raaa~sa-l~~~t~-av~mDskfaav~gal~dpa------a~palvVd~GngHttaalv--dedRI~gv~E 254 (342)
T COG4012 186 IPESFTRM-RAAAMSA-LSAGTD-AVAMDSKFAAVMGALVDPA------ADPALVVDYGNGHTTAALV--DEDRIVGVYE 254 (342)
T ss_pred CchhHHHH-HHHHHHH-HhcCce-EEEEcchhHhhhhcccCcc------cCceEEEEccCCceEEEEe--cCCeEEEEee
Confidence 67777632 2222222 233433 3456666666655554332 3479999999999999885 4455655555
Q ss_pred eCCCCcccHHHHHHHHHHHHHHH
Q 003290 224 SFDRSVGGRDFDEVLFQHFAAKF 246 (833)
Q Consensus 224 ~~d~~lGG~~~D~~l~~~l~~~~ 246 (833)
.....+.-..|-..|.+++.-++
T Consensus 255 HHT~~Lspekled~I~rf~~GeL 277 (342)
T COG4012 255 HHTIRLSPEKLEDQIIRFVEGEL 277 (342)
T ss_pred cccccCCHHHHHHHHHHHHhccc
Confidence 55677777777666666655444
No 157
>PRK03011 butyrate kinase; Provisional
Probab=65.31 E-value=10 Score=42.05 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=36.5
Q ss_pred CccEEEEeCCCCChHHHHHHHHHHhC----CCCCCCCCchhHHHhHHHH
Q 003290 331 DVHMVEVVGSSSRVPAIIKILTEFFG----KEPRRTMNASECVARGCAL 375 (833)
Q Consensus 331 ~i~~ViLvGG~sriP~v~~~l~~~fg----~~~~~~~npdeava~Gaa~ 375 (833)
+++.|+|.||.+..+.+++.|.+.+. ..+....+-.+|.+.||+.
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~r 343 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALR 343 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHH
Confidence 68999999999999999999988774 3345555677899999874
No 158
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=64.95 E-value=32 Score=41.41 Aligned_cols=66 Identities=12% Similarity=0.113 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhH
Q 003290 688 VIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCR 767 (833)
Q Consensus 688 a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~ 767 (833)
+...+...+..++..+.... ..++.++++.+...+++++.||+.. ...+++.+.++|+..+.
T Consensus 532 ~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~l~~~---------------d~~~~~~~~~~l~~~~~ 593 (616)
T PRK05183 532 QKVEAERVLEALQAALAADG---DLLSAAERAAIDAAMAALREVAQGD---------------DADAIEAAIKALDKATQ 593 (616)
T ss_pred HHHHHHHHHHHHHHHHHHhh---ccCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHHHH
Confidence 34445555666655553211 4588999999999999999999742 12689999999999999
Q ss_pred hhhc
Q 003290 768 PIMT 771 (833)
Q Consensus 768 ~l~~ 771 (833)
+++.
T Consensus 594 ~~~~ 597 (616)
T PRK05183 594 EFAA 597 (616)
T ss_pred HHHH
Confidence 9885
No 159
>PRK02224 chromosome segregation protein; Provisional
Probab=64.72 E-value=1.2e+02 Score=38.34 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHh
Q 003290 578 GMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWL 649 (833)
Q Consensus 578 ~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL 649 (833)
.+++.+...++.++..+..-+.......+++..++...-.++..+. .+...+...++..+...|..++.=+
T Consensus 145 ~~~p~~R~~ii~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~l~~~~~~l 215 (880)
T PRK02224 145 NATPSDRQDMIDDLLQLGKLEEYRERASDARLGVERVLSDQRGSLD-QLKAQIEEKEEKDLHERLNGLESEL 215 (880)
T ss_pred cCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999988888766555555555555556666666666554 2333333344444444444444444
No 160
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=64.50 E-value=1.6e+02 Score=32.44 Aligned_cols=84 Identities=17% Similarity=0.236 Sum_probs=53.5
Q ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHhccchHHHHHHhhhcchHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHH
Q 003290 641 KLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEFTDRSSVIDQLAYCINSYREAALSSDPKFDHIDIAEKQK 720 (833)
Q Consensus 641 ~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~ 720 (833)
+|+++++||.++ +. ++..+.+++.+-++.+-||.-++.|+-.-=..|+.+ .+ .-..|-..-
T Consensus 9 ~LeeLe~kLa~~-d~-~Kd~V~~~I~ea~~sILPlRL~FNeFi~tma~Ie~~--------------~~---~s~qeKFl~ 69 (379)
T PF11593_consen 9 KLEELEEKLASN-DN-SKDSVMDKISEAQDSILPLRLQFNEFIQTMANIEEM--------------NN---KSPQEKFLL 69 (379)
T ss_pred cHHHHHHHHhcC-Cc-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcc--------------cc---cCHHHHHHH
Confidence 578999999854 44 999999999999999999999877654332222111 11 112344455
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC
Q 003290 721 VLNECADAEAWVREKKQQQDALP 743 (833)
Q Consensus 721 v~~~~~~~~~Wl~~~~~~q~~~~ 743 (833)
|++++-++..-|.+......+|.
T Consensus 70 IR~KlleL~~~lQ~lS~df~~Lq 92 (379)
T PF11593_consen 70 IRSKLLELYNKLQELSSDFQKLQ 92 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 55555555555555555555443
No 161
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=63.65 E-value=20 Score=28.60 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=32.7
Q ss_pred HHHHHHhcCCCcCcEEEEecCccCHHHHHHHHHHHHHcCCccE
Q 003290 126 KAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPL 168 (833)
Q Consensus 126 ~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~~Aa~~AGl~~~ 168 (833)
.+..+.+.... ....++.|+.++..+|..+.+.|+..||...
T Consensus 5 ~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s~ 46 (60)
T cd02640 5 RQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKSR 46 (60)
T ss_pred HHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCcee
Confidence 33444454433 4678999999999999999999999999853
No 162
>PRK13410 molecular chaperone DnaK; Provisional
Probab=63.49 E-value=26 Score=42.57 Aligned_cols=71 Identities=8% Similarity=0.051 Sum_probs=46.8
Q ss_pred chHHHHHHHHHHHHHHHHhhcCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHH
Q 003290 685 RSSVIDQLAYCINSYREAALSSDPKF-DHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALD 763 (833)
Q Consensus 685 rp~a~~~l~~~l~~~~~~~~~~~~~~-~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~ 763 (833)
+-++.+.+...+..++..+......| ..++++++..+...+++++.||.+.-. .+++.+..++.
T Consensus 527 ~~e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~~~---------------~~~~~~~~~~~ 591 (668)
T PRK13410 527 RIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDD---------------RELDLAVADLQ 591 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCH---------------HHHHHHHHHHH
Confidence 33466667777777777664322223 568999999999999999999975311 34555555555
Q ss_pred HHhHhhh
Q 003290 764 RFCRPIM 770 (833)
Q Consensus 764 ~~~~~l~ 770 (833)
..+..+.
T Consensus 592 ~~l~~~~ 598 (668)
T PRK13410 592 EALYGLN 598 (668)
T ss_pred HHHHHHH
Confidence 5555544
No 163
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=62.25 E-value=61 Score=36.09 Aligned_cols=81 Identities=16% Similarity=0.093 Sum_probs=55.0
Q ss_pred EecHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCCCccE-EEEeCCCCChHHHHHHHHHHhC-CCCC-CCCCchhHHHhH
Q 003290 297 FIKRDEFEQISAPILERV-KRPLEKALAETGLSVEDVHM-VEVVGSSSRVPAIIKILTEFFG-KEPR-RTMNASECVARG 372 (833)
Q Consensus 297 ~itr~efe~l~~~~~~~i-~~~i~~~l~~~~~~~~~i~~-ViLvGG~sriP~v~~~l~~~fg-~~~~-~~~npdeava~G 372 (833)
.-.+.++-..++..++++ ...++.++++.+ ++. |.|.||..-.-..-..|.+..+ .++. .+.-.|.-+|+|
T Consensus 132 ~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiG 206 (360)
T PF02543_consen 132 TQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIG 206 (360)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHH
Confidence 456777777778777665 455667777766 445 9999999888777777877754 2333 344567889999
Q ss_pred HHHhchhhcC
Q 003290 373 CALQCAILSP 382 (833)
Q Consensus 373 aa~~aa~ls~ 382 (833)
||+++.....
T Consensus 207 aA~~~~~~~~ 216 (360)
T PF02543_consen 207 AALYAWHELG 216 (360)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 9999885543
No 164
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=61.57 E-value=1e+02 Score=29.70 Aligned_cols=30 Identities=13% Similarity=0.101 Sum_probs=25.2
Q ss_pred eEEEEEeCCceEEEEEEEEeCCeEEEEEee
Q 003290 195 NVAFVDIGHASLQVCIAGFKKGQLKILGHS 224 (833)
Q Consensus 195 ~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~ 224 (833)
.||-+|-|-.+|=.++++..++.+.++..+
T Consensus 1 rILGIDPGl~~~G~av~~~~~~~~~~~~~g 30 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQEGRKLIYLASG 30 (154)
T ss_pred CEEEEccCcCceEEEEEEeeCCeEEEEEee
Confidence 378899999999999999888887777654
No 165
>PLN02405 hexokinase
Probab=60.73 E-value=50 Score=38.38 Aligned_cols=53 Identities=21% Similarity=0.155 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHcCC--ccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEE
Q 003290 152 QRRAVIDAATIAGL--HPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIA 211 (833)
Q Consensus 152 qR~al~~Aa~~AGl--~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv 211 (833)
-.+.|.+|++.-|+ +++.|||+.++..++.++.. +...+-+=+|-||=-+.+-
T Consensus 207 Vv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~-------~~~~iG~IlGTGtNacY~E 261 (497)
T PLN02405 207 VVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYN-------PDVVAAVILGTGTNAAYVE 261 (497)
T ss_pred HHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCC-------CCceEEEEEeCCeeeEEEe
Confidence 34555555555555 57889999999887765432 2333444467776554443
No 166
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=58.62 E-value=2.8e+02 Score=30.32 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=30.8
Q ss_pred ccEEEEeCCCCChHHHHHHHHHHh---CCCCCCC---CCchhHHHhH
Q 003290 332 VHMVEVVGSSSRVPAIIKILTEFF---GKEPRRT---MNASECVARG 372 (833)
Q Consensus 332 i~~ViLvGG~sriP~v~~~l~~~f---g~~~~~~---~npdeava~G 372 (833)
+..|+|.||......+++.|.+.+ |.++..+ +-.|..+++|
T Consensus 243 ~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 243 KKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 667999999999999999999965 3333322 2457778887
No 167
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=58.01 E-value=8.8 Score=44.92 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=18.4
Q ss_pred Ce-EEEEEcCccceEEEEEECCc
Q 003290 1 MS-VVGFDLGNESCIVAVARQRG 22 (833)
Q Consensus 1 m~-viGID~GTt~s~va~~~~~~ 22 (833)
|. ++|||+|||++++++++..+
T Consensus 1 ~~~~lgiDiGTts~Ka~l~d~~G 23 (504)
T PTZ00294 1 MKYIGSIDQGTTSTRFIIFDEKG 23 (504)
T ss_pred CcEEEEEecCCCceEEEEECCCC
Confidence 44 89999999999999987543
No 168
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=57.56 E-value=62 Score=36.47 Aligned_cols=48 Identities=6% Similarity=-0.012 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCC-ChHHHHHHHHHHhC
Q 003290 306 ISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSS-RVPAIIKILTEFFG 356 (833)
Q Consensus 306 l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-riP~v~~~l~~~fg 356 (833)
.++-++.++.+.|-...... ...||.|+++||.+ ..+.|++.|.+.++
T Consensus 301 A~d~f~yri~k~Iga~~a~L---~g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 301 ALDVFVYRLAKYIGSYAAAL---NGRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHh---cCCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 34455666666665554443 13699999999999 99999999998764
No 169
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=56.38 E-value=12 Score=43.93 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=17.9
Q ss_pred eEEEEEcCccceEEEEEECC
Q 003290 2 SVVGFDLGNESCIVAVARQR 21 (833)
Q Consensus 2 ~viGID~GTt~s~va~~~~~ 21 (833)
.++|||+|||++++.+++..
T Consensus 5 ~~lgIDiGTt~~Kavl~d~~ 24 (502)
T COG1070 5 YVLGIDIGTTSVKAVLFDED 24 (502)
T ss_pred EEEEEEcCCCcEEEEEEeCC
Confidence 68999999999999988755
No 170
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=56.30 E-value=9.8 Score=44.73 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=17.1
Q ss_pred EEEEEcCccceEEEEEECC
Q 003290 3 VVGFDLGNESCIVAVARQR 21 (833)
Q Consensus 3 viGID~GTt~s~va~~~~~ 21 (833)
++|||+|||++++++++..
T Consensus 5 ~lgID~GTts~Ka~l~d~~ 23 (520)
T PRK10939 5 LMALDAGTGSIRAVIFDLN 23 (520)
T ss_pred EEEEecCCCceEEEEECCC
Confidence 8999999999999998744
No 171
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=56.08 E-value=16 Score=33.66 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=16.8
Q ss_pred EEEEEcCccceEEEEEECCc
Q 003290 3 VVGFDLGNESCIVAVARQRG 22 (833)
Q Consensus 3 viGID~GTt~s~va~~~~~~ 22 (833)
|++||+|++.++++++..+.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~ 20 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGS 20 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTE
T ss_pred CEEEEcCCCcEEEEEEEeCC
Confidence 68999999999999998753
No 172
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=55.99 E-value=3e+02 Score=29.84 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHh
Q 003290 312 ERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFF 355 (833)
Q Consensus 312 ~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~f 355 (833)
+-+...++++++.. .++.|+|.||......+++.|.+.+
T Consensus 244 ~~l~~~~~~~~~~~-----g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 244 DHLIEKTKRALKDT-----GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred HHHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 33444445555543 4678999999999999999998887
No 173
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=55.58 E-value=22 Score=43.23 Aligned_cols=48 Identities=13% Similarity=0.143 Sum_probs=37.9
Q ss_pred CccEEEEeCCCCChHHHHHHHHHHhC---CCCCC---CCCchhHHHhHHHHhch
Q 003290 331 DVHMVEVVGSSSRVPAIIKILTEFFG---KEPRR---TMNASECVARGCALQCA 378 (833)
Q Consensus 331 ~i~~ViLvGG~sriP~v~~~l~~~fg---~~~~~---~~npdeava~Gaa~~aa 378 (833)
.++.|+|+||......+++.|.+.++ .++.. ..-.|.++++|.|+.|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998774 33322 23568999999988774
No 174
>PRK13318 pantothenate kinase; Reviewed
Probab=55.38 E-value=12 Score=39.68 Aligned_cols=20 Identities=15% Similarity=0.383 Sum_probs=17.5
Q ss_pred EEEEEcCccceEEEEEECCc
Q 003290 3 VVGFDLGNESCIVAVARQRG 22 (833)
Q Consensus 3 viGID~GTt~s~va~~~~~~ 22 (833)
+++||+|+|+++++++.++.
T Consensus 2 iL~IDIGnT~iK~al~d~g~ 21 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGK 21 (258)
T ss_pred EEEEEECCCcEEEEEEECCE
Confidence 68999999999999998543
No 175
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=55.09 E-value=60 Score=38.89 Aligned_cols=64 Identities=9% Similarity=0.111 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhHhh
Q 003290 690 DQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCRPI 769 (833)
Q Consensus 690 ~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l 769 (833)
..+...+..++..+.... .+++.+++..+...+++++.||... | ..+++.+.++|...+..+
T Consensus 518 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~l~~~-----------~----~~~~~~~~~~l~~~~~~~ 579 (599)
T TIGR01991 518 VEAERILEALQAALAADG---DLLSEDERAAIDAAMEALQKALQGD-----------D----ADAIKAAIEALEEATDNF 579 (599)
T ss_pred HHHHHHHHHHHHHHHHhh---ccCCHHHHHHHHHHHHHHHHHHhcC-----------C----HHHHHHHHHHHHHHHHHH
Confidence 344555555554442211 2588999999999999999999742 1 157889999999988887
Q ss_pred hc
Q 003290 770 MT 771 (833)
Q Consensus 770 ~~ 771 (833)
+.
T Consensus 580 ~~ 581 (599)
T TIGR01991 580 AA 581 (599)
T ss_pred HH
Confidence 75
No 176
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=54.62 E-value=8.9 Score=41.68 Aligned_cols=52 Identities=17% Similarity=0.302 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHHHHH----HHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCCC
Q 003290 299 KRDEFEQISAPILER----VKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKE 358 (833)
Q Consensus 299 tr~efe~l~~~~~~~----i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~ 358 (833)
+-++.+++...+++. +...|+.++.+.|+++ +..||.. |++-..+.+.+|.+
T Consensus 246 ~~~~~~~~A~~i~~~~~~~m~~ai~~v~~~~G~Dp------v~~gGaG--~~~a~~lA~~lg~~ 301 (318)
T TIGR03123 246 GEEDVRNLAKYYYEAQLEQLTEAIEEVLERYGLKT------VVAAGAG--EFLAKEAAARLGRE 301 (318)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------eEEecch--HHHHHHHHHHcCCC
Confidence 344566666655544 4444555555555543 5555555 88888888888754
No 177
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=54.41 E-value=2.2e+02 Score=30.61 Aligned_cols=45 Identities=16% Similarity=0.026 Sum_probs=29.6
Q ss_pred HcCCccEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEE
Q 003290 162 IAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIA 211 (833)
Q Consensus 162 ~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv 211 (833)
..|++ +.+-|+..|+|++-.+..... ..++++++.+|.| +-.+++
T Consensus 95 ~~~~p-V~ieNDa~aaalaE~~~g~~~---~~~~~~~l~~gtG-iG~giv 139 (303)
T PRK13310 95 RLGRD-VRLDNDANCFALSEAWDDEFT---QYPLVMGLILGTG-VGGGLV 139 (303)
T ss_pred HHCCC-eEEeccHhHHHHHHhhhcccc---CCCcEEEEEecCc-eEEEEE
Confidence 35886 579999999998754432211 2468899899865 344443
No 178
>PRK13321 pantothenate kinase; Reviewed
Probab=54.08 E-value=12 Score=39.45 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=17.3
Q ss_pred EEEEEcCccceEEEEEECC
Q 003290 3 VVGFDLGNESCIVAVARQR 21 (833)
Q Consensus 3 viGID~GTt~s~va~~~~~ 21 (833)
+++||+|+|++++|++.++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 6899999999999999855
No 179
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=53.70 E-value=38 Score=34.46 Aligned_cols=51 Identities=20% Similarity=0.346 Sum_probs=32.6
Q ss_pred CceEEEEEeCCceEEEEEEEEeCC-eEEEEEeeCCCC----cccHHHHHHHHHHHHHHH
Q 003290 193 QLNVAFVDIGHASLQVCIAGFKKG-QLKILGHSFDRS----VGGRDFDEVLFQHFAAKF 246 (833)
Q Consensus 193 ~~~vlv~D~Gggt~dvsvv~~~~~-~~~vl~~~~d~~----lGG~~~D~~l~~~l~~~~ 246 (833)
...+|++|+||.++-+++|++.++ .+.+....+..+ .| .. ..|.+|+++.+
T Consensus 62 ~G~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~ip~~~~~~-~~--~~lFd~ia~~i 117 (206)
T PF00349_consen 62 KGDFLALDLGGTNLRVALVELSGNGKVEIEQEKYKIPEELMNG-SG--EELFDFIADCI 117 (206)
T ss_dssp EEEEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE--HHHHTS-BH--HHHHHHHHHHH
T ss_pred CceEEEEeecCcEEEEEEEEEcCCCCceeeeccccCChHHhcC-Cc--ccHHHHHHHHH
Confidence 457999999999999999999976 444433322221 12 11 45566666544
No 180
>PRK10331 L-fuculokinase; Provisional
Probab=53.61 E-value=10 Score=43.93 Aligned_cols=19 Identities=11% Similarity=0.242 Sum_probs=16.8
Q ss_pred EEEEEcCccceEEEEEECC
Q 003290 3 VVGFDLGNESCIVAVARQR 21 (833)
Q Consensus 3 viGID~GTt~s~va~~~~~ 21 (833)
++|||+|||+++++++...
T Consensus 4 ~lgID~GTt~~Ka~l~d~~ 22 (470)
T PRK10331 4 ILVLDCGATNVRAIAVDRQ 22 (470)
T ss_pred EEEEecCCCceEEEEEcCC
Confidence 7999999999999998643
No 181
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=52.15 E-value=11 Score=43.56 Aligned_cols=20 Identities=10% Similarity=0.184 Sum_probs=17.4
Q ss_pred eEEEEEcCccceEEEEEECC
Q 003290 2 SVVGFDLGNESCIVAVARQR 21 (833)
Q Consensus 2 ~viGID~GTt~s~va~~~~~ 21 (833)
.++|||+|||++++++++..
T Consensus 2 ~ilgiD~GTss~K~~l~d~~ 21 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQ 21 (465)
T ss_pred eEEEEecCCCcEEEEEEcCC
Confidence 37999999999999998754
No 182
>PRK04863 mukB cell division protein MukB; Provisional
Probab=50.95 E-value=7.7e+02 Score=33.13 Aligned_cols=116 Identities=11% Similarity=0.095 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhccchHHHHHHhhhcchHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 003290 635 RELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEFTDRSSVIDQLAYCINSYREAALSSDPKFDHID 714 (833)
Q Consensus 635 r~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~ 714 (833)
.+++...+.+..+.+.+- ....+...+++..|+.-.......+.+...+-.........+..++.++. .+.++
T Consensus 364 Lee~eeeLeeleeeleel--eeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~-----~~~~S 436 (1486)
T PRK04863 364 LEEQNEVVEEADEQQEEN--EARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCG-----LPDLT 436 (1486)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCC
Confidence 344444444444444431 12333444555555544444455555555555555555555666666552 24577
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhHhhh
Q 003290 715 IAEKQKVLNE----CADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCRPIM 770 (833)
Q Consensus 715 ~~e~~~v~~~----~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~ 770 (833)
.+++....+. +.+...++.+...+.. +++...+.+......+.
T Consensus 437 dEeLe~~LenF~aklee~e~qL~elE~kL~-------------~lea~leql~~~~~~l~ 483 (1486)
T PRK04863 437 ADNAEDWLEEFQAKEQEATEELLSLEQKLS-------------VAQAAHSQFEQAYQLVR 483 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHH
Confidence 7776655444 4444555554444332 34555555555555443
No 183
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=49.71 E-value=1.1e+02 Score=34.57 Aligned_cols=48 Identities=8% Similarity=0.176 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCC-ChHHHHHHHHHHhC
Q 003290 306 ISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSS-RVPAIIKILTEFFG 356 (833)
Q Consensus 306 l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-riP~v~~~l~~~fg 356 (833)
.++-++.++.+.|-......+ ..+|.|+++||.. ..+.|++.|.+.++
T Consensus 305 A~~~f~yri~k~Iga~~a~L~---G~vDaiVFTGGIGEns~~vr~~i~~~l~ 353 (404)
T TIGR00016 305 AIKMYVHRIAKYIGSYIASLE---GNLDAIVFTGGIGENAATVRELVLEALE 353 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhC---CCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 344555666666655444322 1489999999999 99999999998764
No 184
>PRK15027 xylulokinase; Provisional
Probab=49.61 E-value=14 Score=43.07 Aligned_cols=19 Identities=26% Similarity=0.538 Sum_probs=16.9
Q ss_pred EEEEEcCccceEEEEEECC
Q 003290 3 VVGFDLGNESCIVAVARQR 21 (833)
Q Consensus 3 viGID~GTt~s~va~~~~~ 21 (833)
+||||+|||++++++++..
T Consensus 2 ~lgID~GTts~Ka~l~d~~ 20 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNEQ 20 (484)
T ss_pred EEEEEecccceEEEEEcCC
Confidence 6999999999999998743
No 185
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=49.41 E-value=13 Score=36.38 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=0.0
Q ss_pred CeEEEEEcCccceEEEEEECCceEEEcCCCCCccceE
Q 003290 1 MSVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPS 37 (833)
Q Consensus 1 m~viGID~GTt~s~va~~~~~~~~ii~n~~~~r~tPs 37 (833)
|-|+|||-|++++..|++...+-.+..-..|.-++++
T Consensus 2 m~iLGIDPgl~~tG~avi~~~~~~~~~~~~G~i~t~~ 38 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIEVEGRRLSYVASGVIRTPS 38 (164)
T ss_pred CEEEEEccccCceeEEEEEecCCeEEEEEeeEEECCC
No 186
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=49.19 E-value=14 Score=43.19 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=16.9
Q ss_pred EEEEEcCccceEEEEEECC
Q 003290 3 VVGFDLGNESCIVAVARQR 21 (833)
Q Consensus 3 viGID~GTt~s~va~~~~~ 21 (833)
+||||+|||+++++++...
T Consensus 2 ~lgiDiGtt~~K~~l~d~~ 20 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFEEN 20 (505)
T ss_pred EEEEeccccceEEEEEcCC
Confidence 7999999999999998654
No 187
>PLN02377 3-ketoacyl-CoA synthase
Probab=48.63 E-value=40 Score=39.23 Aligned_cols=56 Identities=11% Similarity=0.195 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEE-eCCCCChHHHHHHHHHHhCCC
Q 003290 303 FEQISAPILERVKRPLEKALAETGLSVEDVHMVEV-VGSSSRVPAIIKILTEFFGKE 358 (833)
Q Consensus 303 fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViL-vGG~sriP~v~~~l~~~fg~~ 358 (833)
++...++...-+...++++|+++|++++||+.|++ +.|....|.+-.+|.+.+|.+
T Consensus 165 ~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LGlr 221 (502)
T PLN02377 165 MAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYKLR 221 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhCCC
Confidence 44444555555677788899999999999999987 445556899999999999954
No 188
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=48.02 E-value=17 Score=40.48 Aligned_cols=20 Identities=30% Similarity=0.622 Sum_probs=17.9
Q ss_pred EEEEEcCccceEEEEEECCc
Q 003290 3 VVGFDLGNESCIVAVARQRG 22 (833)
Q Consensus 3 viGID~GTt~s~va~~~~~~ 22 (833)
++|||+|++.+++.++++++
T Consensus 4 ~lGIDIGSTsTKaVVmd~~g 23 (432)
T TIGR02259 4 FVGIDLGSTTTKAVLMDDKG 23 (432)
T ss_pred EEEEEcCchhEEEEEEcCCC
Confidence 79999999999999988664
No 189
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=47.56 E-value=16 Score=43.20 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=16.8
Q ss_pred EEEEEcCccceEEEEEECC
Q 003290 3 VVGFDLGNESCIVAVARQR 21 (833)
Q Consensus 3 viGID~GTt~s~va~~~~~ 21 (833)
++|||+|||++++++++..
T Consensus 2 ~lgID~GTts~Ka~l~d~~ 20 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDST 20 (541)
T ss_pred EEEEEecCcCEEEEEEcCC
Confidence 7999999999999998643
No 190
>PLN02295 glycerol kinase
Probab=47.28 E-value=16 Score=42.87 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=16.9
Q ss_pred EEEEEcCccceEEEEEECC
Q 003290 3 VVGFDLGNESCIVAVARQR 21 (833)
Q Consensus 3 viGID~GTt~s~va~~~~~ 21 (833)
++|||+|||++++++++..
T Consensus 2 vlgID~GTts~Ka~l~d~~ 20 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYDRD 20 (512)
T ss_pred EEEEecCCCceEEEEECCC
Confidence 7999999999999998643
No 191
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=47.13 E-value=18 Score=42.77 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=16.7
Q ss_pred eEEEEEcCccceEEEEEE
Q 003290 2 SVVGFDLGNESCIVAVAR 19 (833)
Q Consensus 2 ~viGID~GTt~s~va~~~ 19 (833)
-++|||+||+++++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d 19 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVD 19 (536)
T ss_pred eEEEEecCCCceEEEEEE
Confidence 379999999999999988
No 192
>PRK04123 ribulokinase; Provisional
Probab=46.46 E-value=18 Score=42.90 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=16.2
Q ss_pred EEEEEcCccceEEEEEE
Q 003290 3 VVGFDLGNESCIVAVAR 19 (833)
Q Consensus 3 viGID~GTt~s~va~~~ 19 (833)
++|||+|||++++++++
T Consensus 5 ~lgiD~GTts~Ka~l~d 21 (548)
T PRK04123 5 VIGLDFGTDSVRALLVD 21 (548)
T ss_pred EEEEecCCCceEEEEEE
Confidence 79999999999999987
No 193
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=44.90 E-value=1.2e+02 Score=29.54 Aligned_cols=89 Identities=17% Similarity=0.232 Sum_probs=54.6
Q ss_pred eCHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEecCccCHHH----------------HHHHHHHHHHcCCccEEeechhH
Q 003290 112 FTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQ----------------RRAVIDAATIAGLHPLRLFHETT 175 (833)
Q Consensus 112 ~~~eel~a~~L~~l~~~ae~~~~~~~~~~VITVP~~f~~~q----------------R~al~~Aa~~AGl~~~~li~Ept 175 (833)
.++++++..+...+.+..... +.. .+.|++|..++... .+.+.+ ..+++ +.+.|+..
T Consensus 30 ~~~~~~~~~l~~~i~~~~~~~-~~~--gIgi~~pG~v~~~~g~i~~~~~~~~~~~~l~~~l~~---~~~~p-v~i~Nd~~ 102 (179)
T PF00480_consen 30 TSPEELLDALAELIERLLADY-GRS--GIGISVPGIVDSEKGRIISSPNPGWENIPLKEELEE---RFGVP-VIIENDAN 102 (179)
T ss_dssp SSHHHHHHHHHHHHHHHHHHH-TCE--EEEEEESSEEETTTTEEEECSSGTGTTCEHHHHHHH---HHTSE-EEEEEHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhc-ccc--cEEEeccccCcCCCCeEEecCCCCcccCCHHHHhhc---ccceE-EEEecCCC
Confidence 456677777666666655443 222 66666666655432 223332 34665 47999999
Q ss_pred HHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEE
Q 003290 176 ATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIA 211 (833)
Q Consensus 176 AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv 211 (833)
|+|+++....... ..++++++-+|.| +-.+++
T Consensus 103 ~~a~ae~~~~~~~---~~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 103 AAALAEYWFGAAK---DCDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp HHHHHHHHHSTTT---TTSSEEEEEESSS-EEEEEE
T ss_pred cceeehhhcCccC---CcceEEEEEeecC-CCccee
Confidence 9999886654321 2468888899876 455554
No 194
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=44.73 E-value=18 Score=42.11 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=16.9
Q ss_pred EEEEEcCccceEEEEEECC
Q 003290 3 VVGFDLGNESCIVAVARQR 21 (833)
Q Consensus 3 viGID~GTt~s~va~~~~~ 21 (833)
+||||+|||++++++++..
T Consensus 3 ~lgiDiGtt~iKa~l~d~~ 21 (493)
T TIGR01311 3 ILAIDQGTTSSRAIVFDKD 21 (493)
T ss_pred EEEEecCCCceEEEEECCC
Confidence 7999999999999998644
No 195
>PRK00047 glpK glycerol kinase; Provisional
Probab=44.02 E-value=19 Score=42.01 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=16.9
Q ss_pred EEEEEcCccceEEEEEECC
Q 003290 3 VVGFDLGNESCIVAVARQR 21 (833)
Q Consensus 3 viGID~GTt~s~va~~~~~ 21 (833)
+||||+|||++++++++..
T Consensus 7 ~lgiD~GTts~Ka~l~d~~ 25 (498)
T PRK00047 7 ILALDQGTTSSRAIIFDHD 25 (498)
T ss_pred EEEEecCCCceEEEEECCC
Confidence 7999999999999998643
No 196
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=43.79 E-value=60 Score=25.89 Aligned_cols=30 Identities=20% Similarity=0.178 Sum_probs=26.8
Q ss_pred cEEEEecCccCHHHHHHHHHHHHHcCCccE
Q 003290 139 DCCIGIPVYFTDLQRRAVIDAATIAGLHPL 168 (833)
Q Consensus 139 ~~VITVP~~f~~~qR~al~~Aa~~AGl~~~ 168 (833)
...+..|+.++..||..+.+.|+..||...
T Consensus 17 ~~~l~F~p~ls~~eR~~vH~lA~~~gL~s~ 46 (60)
T cd02641 17 ATELEFPPTLSSHDRLLVHELAEELGLRHE 46 (60)
T ss_pred cCcEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 367899999999999999999999998753
No 197
>PRK13317 pantothenate kinase; Provisional
Probab=43.36 E-value=26 Score=37.45 Aligned_cols=20 Identities=15% Similarity=0.318 Sum_probs=17.3
Q ss_pred eEEEEEcCccceEEEEEECC
Q 003290 2 SVVGFDLGNESCIVAVARQR 21 (833)
Q Consensus 2 ~viGID~GTt~s~va~~~~~ 21 (833)
..||||+|+|.+++++..++
T Consensus 3 ~~iGIDiGstt~K~v~~~~~ 22 (277)
T PRK13317 3 MKIGIDAGGTLTKIVYLEEK 22 (277)
T ss_pred ceEEEEeCcccEEEEEEcCC
Confidence 47899999999999997654
No 198
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=42.95 E-value=89 Score=26.05 Aligned_cols=54 Identities=26% Similarity=0.422 Sum_probs=34.8
Q ss_pred HHHhhhcCCCCCHHHHHHHHHHHHh----ccchHHHHHH-hhhcchHHHHHHHHHHHHHHHHhh
Q 003290 646 EDWLYEDGEDETKGVYVAKLEELKK----QGDPIEERYK-EFTDRSSVIDQLAYCINSYREAAL 704 (833)
Q Consensus 646 ~~WL~~~g~~a~~~~~~~kl~~L~~----~~~pi~~R~~-e~~~rp~a~~~l~~~l~~~~~~~~ 704 (833)
+.||.++ ..++.+|.+.+-+ -++.+..|.. -+..||+.|.-+...-+.++.+++
T Consensus 13 skWL~~~-----l~dmd~kvk~mlklieedgdSfakrAEmyy~kRp~Li~~vee~yr~YrsLAe 71 (74)
T PF07765_consen 13 SKWLQEN-----LSDMDEKVKAMLKLIEEDGDSFAKRAEMYYKKRPELISLVEEFYRSYRSLAE 71 (74)
T ss_pred CHHHHHH-----HHHHHHHHHHHHHHhccCcchHHHhhHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 3466553 4444444444333 3444555554 578999999999998888888774
No 199
>PRK12440 acetate kinase; Reviewed
Probab=42.66 E-value=59 Score=36.48 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHH-HHHHHHHHhC
Q 003290 306 ISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPA-IIKILTEFFG 356 (833)
Q Consensus 306 l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~-v~~~l~~~fg 356 (833)
.++-++.++.+.|-......+ .+|.|+++||-..... |++.|.+.++
T Consensus 299 A~d~f~yri~k~Ig~~~a~l~----gvDaiVFTgGIGen~~~vr~~i~~~l~ 346 (397)
T PRK12440 299 AFEVFTYRVAKYIASYLAALD----SLDGIIFTGGIGENSLPIRREILKNLK 346 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhC----CCCEEEECCccccCcHHHHHHHHhhhh
Confidence 344556666666665554433 5999999999988776 9999988764
No 200
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=42.64 E-value=30 Score=33.41 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=15.7
Q ss_pred EEEEEcCccceEEEEEE
Q 003290 3 VVGFDLGNESCIVAVAR 19 (833)
Q Consensus 3 viGID~GTt~s~va~~~ 19 (833)
|+|||.|++++..|++.
T Consensus 2 ILGIDPGl~~~G~av~~ 18 (154)
T cd00529 2 ILGIDPGSRNTGYGVIE 18 (154)
T ss_pred EEEEccCcCceEEEEEE
Confidence 79999999999999875
No 201
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=42.46 E-value=55 Score=25.84 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCCcCcEEEEecCccCHHHHHHHHHHHHHcCCcc
Q 003290 125 LKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHP 167 (833)
Q Consensus 125 l~~~ae~~~~~~~~~~VITVP~~f~~~qR~al~~Aa~~AGl~~ 167 (833)
+++..+.++... .-.++.|+ ++..+|..+.+.|...||..
T Consensus 4 i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 4 IKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 444444554433 45679999 89999999999999999874
No 202
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=41.73 E-value=2.8e+02 Score=29.52 Aligned_cols=100 Identities=19% Similarity=0.223 Sum_probs=60.4
Q ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHhhhcchHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 003290 653 GEDETKGVYVAKLEELKKQGDPIEERYKEFTDRSSVIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWV 732 (833)
Q Consensus 653 g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl 732 (833)
.+|+...-=.+.|=++-+.++||..-+-+.-.|-.+++.|....+++-..+. |+. ...+.+.+.+..-..-|
T Consensus 270 ~~Da~~d~KV~elye~~qrw~pi~stLP~~V~rl~al~~LHeqa~~Fa~~lt-------hl~-t~q~~i~~sl~~n~ell 341 (371)
T KOG3958|consen 270 VEDADTDSKVHELYETIQRWSPIASTLPELVQRLVALKQLHEQAMQFAQLLT-------HLD-TTQQMIANSLKDNTELL 341 (371)
T ss_pred cccchhhhhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH-HHHHHHHHHHhcchHHH
Confidence 3566666656666777778889988888888899999999888877766552 221 23334444433333333
Q ss_pred HHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhHhh
Q 003290 733 REKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCRPI 769 (833)
Q Consensus 733 ~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l 769 (833)
-+....... ...-|+.|+..|+..+..|
T Consensus 342 ~~vqtt~~q---------nl~tV~~k~a~ie~rva~l 369 (371)
T KOG3958|consen 342 TQVQTTMRQ---------NLATVEGKFASIEERVAKL 369 (371)
T ss_pred HHHHHHHHH---------HHHHHHHHHHHHHHHHHHh
Confidence 322221110 1235777777777776655
No 203
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=41.08 E-value=1.8e+02 Score=35.22 Aligned_cols=68 Identities=12% Similarity=0.051 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhH
Q 003290 688 VIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCR 767 (833)
Q Consensus 688 a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~ 767 (833)
+...+...|..++..+... ..++.+++..+.+.+..++.||+. ++ . ...+|+.+.++|...+.
T Consensus 555 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~----~~-----~----~~~~~~~~~~~l~~~~~ 617 (657)
T PTZ00186 555 VRNNAETQLTTAERQLGEW----KYVSDAEKENVKTLVAELRKAMEN----PN-----V----AKDDLAAATDKLQKAVM 617 (657)
T ss_pred HHHHHHHHHHHHHHHhhhh----ccCCHHHHHHHHHHHHHHHHHHhc----CC-----c----CHHHHHHHHHHHHHHHH
Confidence 5555566666666666331 368999999999999999999962 11 1 22689999999999999
Q ss_pred hhhcC
Q 003290 768 PIMTK 772 (833)
Q Consensus 768 ~l~~k 772 (833)
.+..+
T Consensus 618 ~~~~~ 622 (657)
T PTZ00186 618 ECGRT 622 (657)
T ss_pred HHHHH
Confidence 98864
No 204
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=41.00 E-value=1.9e+02 Score=30.58 Aligned_cols=53 Identities=25% Similarity=0.344 Sum_probs=34.1
Q ss_pred CCccEEEEeCCCCChHH----HHHHHHHHh---C--CCCC--CC-CCchhHHHhHHHHhchhhcCC
Q 003290 330 EDVHMVEVVGSSSRVPA----IIKILTEFF---G--KEPR--RT-MNASECVARGCALQCAILSPT 383 (833)
Q Consensus 330 ~~i~~ViLvGG~sriP~----v~~~l~~~f---g--~~~~--~~-~npdeava~Gaa~~aa~ls~~ 383 (833)
...+.|+|.|-.+|+|. |++.|++.| | ..+. .. .-.. -.|.|||+.|..+++.
T Consensus 272 ~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~K-eaA~GaAiiAnaiAGG 336 (374)
T COG2441 272 TYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAK-EAAEGAAIIANAIAGG 336 (374)
T ss_pred cCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhh-hhccchhhhhhhhcch
Confidence 45688999999999875 566666666 2 2221 11 1223 3588999888776654
No 205
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=40.26 E-value=1.3e+02 Score=29.18 Aligned_cols=72 Identities=19% Similarity=0.273 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhccchHHHHHHhhh------cchHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHH
Q 003290 659 GVYVAKLEELKKQGDPIEERYKEFT------DRSSVIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEA 730 (833)
Q Consensus 659 ~~~~~kl~~L~~~~~pi~~R~~e~~------~rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~ 730 (833)
..|.+|++.|++.|.-+..-..+.. +-.+.+..|++.+..++..+.+...--.|++.+|+..|.+.....-.
T Consensus 89 ~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~ 166 (201)
T KOG4603|consen 89 VALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCK 166 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 3455666666666665554433322 22334555555555666666665566779999999999988765533
No 206
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=39.67 E-value=5.8e+02 Score=31.25 Aligned_cols=118 Identities=14% Similarity=0.180 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhccchHHHHHHhhhcchHHHHHHHHHHHHHHHHhhcCC-----CCC
Q 003290 636 ELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEFTDRSSVIDQLAYCINSYREAALSSD-----PKF 710 (833)
Q Consensus 636 ~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~-----~~~ 710 (833)
+.....|++++.||.. |..+|..++.-+.-|..+-.-.+---..-..|.+.|+.....+.-.. -..
T Consensus 40 d~a~~e~d~le~~l~~---------y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~l~i~~~~l~~L~~ 110 (701)
T PF09763_consen 40 DEALAECDELESWLSL---------YDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLDTLSIPEEHLEALRN 110 (701)
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhc
Confidence 5677788888888864 45666666666666665554444444444444444444333221000 000
Q ss_pred CCCCHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcc-cHHHHHHHHHHHHHHh
Q 003290 711 DHIDIAE-KQKVLNECADAEAWVREKKQQQDALPKYAAPVL-LLGDVRRKAEALDRFC 766 (833)
Q Consensus 711 ~~~~~~e-~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~-~~~di~~k~~~l~~~~ 766 (833)
..++..+ +..+ .+.-.||...+..-.......+|-+ .+..+..+.+.+++..
T Consensus 111 ~~l~~~~~l~~~----e~a~~~L~~Al~~i~~~~~~~~~~~~~M~Av~er~~~~~~~~ 164 (701)
T PF09763_consen 111 ASLSSPDGLEKI----EEAAEALYKALKAIRPDLEKLDPGLGQMRAVKERREEYEKVS 164 (701)
T ss_pred CCCCCcccHHHH----HHHHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 1232222 4444 3344666655555333322455555 6667777777666553
No 207
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=38.87 E-value=9.9e+02 Score=32.44 Aligned_cols=133 Identities=18% Similarity=0.256 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHhhhc---CCCCCHHHHHHHHHHHHhccchHHHHHHhhhcchH-----------HHHHHHHHHH--
Q 003290 634 ERELFTSKLQETEDWLYED---GEDETKGVYVAKLEELKKQGDPIEERYKEFTDRSS-----------VIDQLAYCIN-- 697 (833)
Q Consensus 634 er~~i~~~l~e~~~WL~~~---g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~-----------a~~~l~~~l~-- 697 (833)
+...+..=+.+-+.||.+- ..-.+.++++.|.+.|..-++-...|+.+...-.. -|..-+..||
T Consensus 852 e~d~~ElWi~Eke~~L~~m~~~~~~E~vev~q~rFe~l~~eM~~~~~~v~~Vn~~a~qL~~~ghp~sd~I~~~Q~~Ln~r 931 (2473)
T KOG0517|consen 852 ECDACELWIKEKEKWLATMSPPDSLEDVEVMQHRFEKLEQEMNTLAGRVAEVNDIARQLLEVGHPNSDEILARQDKLNQR 931 (2473)
T ss_pred hccHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 3456666677777888752 13355677788887777665555444443221111 1111122222
Q ss_pred --HHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhHh
Q 003290 698 --SYREAALSSDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCRP 768 (833)
Q Consensus 698 --~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~ 768 (833)
.++..+....... -....+..+.-.|.++..|+.++...+..++.-..-.-.+-.+..++..+++-+.+
T Consensus 932 W~~l~~l~~qk~~~L--~~a~~V~~f~~eC~et~~wi~dK~~~~e~t~~~~~Dl~gv~alqrrL~~lErdl~a 1002 (2473)
T KOG0517|consen 932 WQQLRELVDQKKVAL--ESALRVETFHLECEETRVWIRDKTRVLESTDRLGNDLAGVMALQRRLQGLERDLAA 1002 (2473)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccCcchHHHHHHHHHHhhhhhHHHH
Confidence 1222211100000 12345677778899999999999776665555444433444444444444444333
No 208
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=38.84 E-value=53 Score=26.25 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=26.8
Q ss_pred cEEEEecCccCHHHHHHHHHHHHHcCCccE
Q 003290 139 DCCIGIPVYFTDLQRRAVIDAATIAGLHPL 168 (833)
Q Consensus 139 ~~VITVP~~f~~~qR~al~~Aa~~AGl~~~ 168 (833)
.-.++.|+.++..||+.+...|...||...
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~~~ 46 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNHV 46 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCceE
Confidence 566778999999999999999999999764
No 209
>PLN02902 pantothenate kinase
Probab=38.52 E-value=3.1e+02 Score=34.03 Aligned_cols=49 Identities=12% Similarity=-0.025 Sum_probs=30.1
Q ss_pred CCccEEEEeCCCCCh-----HHHHHHHHHHhC---CCCCCCCCchhHHHhHHHHhchh
Q 003290 330 EDVHMVEVVGSSSRV-----PAIIKILTEFFG---KEPRRTMNASECVARGCALQCAI 379 (833)
Q Consensus 330 ~~i~~ViLvGG~sri-----P~v~~~l~~~fg---~~~~~~~npdeava~Gaa~~aa~ 379 (833)
..++.|+++|+.-|- ..|...+. ++. .+....-+--..-|+||.+...-
T Consensus 345 ~~ikrIvF~G~fIr~h~~tm~~ls~Ai~-fwSkg~~~a~FlrHeGylGAlGafl~~~~ 401 (876)
T PLN02902 345 FGLKRIFFGGFFIRGHAYTMDTISFAVH-FWSKGEAQAMFLRHEGFLGALGAFMSYEK 401 (876)
T ss_pred cCCCEEEEecceecCCcchHHHHHHHHH-HhcCCceEEEEecccchhHHHHHHhcCCc
Confidence 468899999998763 33444444 443 23333345556788999876643
No 210
>COG4755 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.47 E-value=3.1e+02 Score=25.35 Aligned_cols=81 Identities=17% Similarity=0.194 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhccchHHHHHHhhhcchHHHHHHHHHHHHHHHHhh---cC---CCC
Q 003290 636 ELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEFTDRSSVIDQLAYCINSYREAAL---SS---DPK 709 (833)
Q Consensus 636 ~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~---~~---~~~ 709 (833)
+-+......++.|.-.. +..|++|++....... ..|-..|-..+.++++....+. +| +-.
T Consensus 11 ~~~~sf~~~Le~WvklQ---------k~~l~~lk~~~~~~k~-----~DRLdLi~~~r~af~hm~rtLKaFd~WLqdP~v 76 (151)
T COG4755 11 EYLESFMERLEQWVKLQ---------KRQLKELKSHGEHMKV-----ADRLDLIYSARAAFGHMARTLKAFDSWLQDPVV 76 (151)
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHhHHHHhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH
Confidence 44555666777888754 5677788877765433 2555556555666665443332 22 112
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 003290 710 FDHIDIAEKQKVLNECADAEA 730 (833)
Q Consensus 710 ~~~~~~~e~~~v~~~~~~~~~ 730 (833)
-.+++.+=+..|.+..-++..
T Consensus 77 ~s~mPremL~dv~~t~~e~~~ 97 (151)
T COG4755 77 TSVMPREMLRDVESTLREVAI 97 (151)
T ss_pred hhhCcHHHHHHHHHHHHHHHH
Confidence 246777777777766644433
No 211
>PRK07157 acetate kinase; Provisional
Probab=38.08 E-value=1.7e+02 Score=32.94 Aligned_cols=48 Identities=6% Similarity=0.136 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHH-HHHHHHHHhC
Q 003290 306 ISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPA-IIKILTEFFG 356 (833)
Q Consensus 306 l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~-v~~~l~~~fg 356 (833)
.++-++.++.+.|-......+ ..||.|+++||-+.... |++.|.+.++
T Consensus 298 A~d~f~yri~k~Ig~~~a~L~---G~vDaiVFTgGIGen~~~vr~~i~~~l~ 346 (400)
T PRK07157 298 ALDLYAQKIVDYLANYINKIG---KKIDAIVFTAGVGENSAFVRELVINKIN 346 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhC---CCCCEEEECCccccCcHHHHHHHHhhcc
Confidence 344556666666655544322 14899999999988776 9999988764
No 212
>PRK13331 pantothenate kinase; Reviewed
Probab=37.37 E-value=34 Score=35.98 Aligned_cols=22 Identities=9% Similarity=-0.016 Sum_probs=19.1
Q ss_pred CeEEEEEcCccceEEEEEECCc
Q 003290 1 MSVVGFDLGNESCIVAVARQRG 22 (833)
Q Consensus 1 m~viGID~GTt~s~va~~~~~~ 22 (833)
|-++.||.|+|++++|+++++.
T Consensus 7 ~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 7 NEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CcEEEEEeCCCcEEEEEEECCE
Confidence 5689999999999999998654
No 213
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=37.17 E-value=7.3e+02 Score=28.94 Aligned_cols=61 Identities=7% Similarity=0.012 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhHhhhcCCCC
Q 003290 713 IDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCRPIMTKPKP 775 (833)
Q Consensus 713 ~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~k~kp 775 (833)
+..+-+.-|..-+..+-.-|.+.+.. +.=.-.++.-...++..-++.-+.++-++.+.+.+
T Consensus 207 LeKenIsYlSsgLhHv~tElKeii~n--K~YtG~~~~~n~~~Vk~ALq~YqELLPKvtTQeAa 267 (574)
T PF07462_consen 207 LEKENISYLSSGLHHVFTELKEIIKN--KKYTGNDHAKNIAEVKEALQAYQELLPKVTTQEAA 267 (574)
T ss_pred cchhhhhhhhhhHHHHHHHHHHHHhc--CCCCCCChhhhHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 44455555555555555555544441 22233566677778888777777776666655544
No 214
>PLN02854 3-ketoacyl-CoA synthase
Probab=37.06 E-value=1.4e+02 Score=34.94 Aligned_cols=46 Identities=13% Similarity=0.289 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEE-eCCCCChHHHHHHHHHHhCCC
Q 003290 313 RVKRPLEKALAETGLSVEDVHMVEV-VGSSSRVPAIIKILTEFFGKE 358 (833)
Q Consensus 313 ~i~~~i~~~l~~~~~~~~~i~~ViL-vGG~sriP~v~~~l~~~fg~~ 358 (833)
-+...++++|+++|+++++|+.||+ +.+....|.+-.+|.+.+|.+
T Consensus 191 v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LGlr 237 (521)
T PLN02854 191 VMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYKLR 237 (521)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhCCC
Confidence 3455667889999999999999987 444445899999999999854
No 215
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=37.03 E-value=6.5e+02 Score=30.89 Aligned_cols=10 Identities=10% Similarity=0.371 Sum_probs=6.6
Q ss_pred EEEEecCccC
Q 003290 140 CCIGIPVYFT 149 (833)
Q Consensus 140 ~VITVP~~f~ 149 (833)
+|+-+|..|+
T Consensus 108 ~V~~LP~r~g 117 (717)
T PF10168_consen 108 VVLELPRRWG 117 (717)
T ss_pred EEEEeccccC
Confidence 5666777665
No 216
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=36.87 E-value=1.3e+02 Score=29.46 Aligned_cols=45 Identities=18% Similarity=0.064 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 003290 688 VIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWV 732 (833)
Q Consensus 688 a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl 732 (833)
.+..|...+......+.........+++++++++..........|
T Consensus 117 ~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w 161 (169)
T PF07106_consen 117 EIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKEW 161 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333444589999999998776554444
No 217
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=36.72 E-value=43 Score=30.63 Aligned_cols=47 Identities=28% Similarity=0.513 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChH--HHHHHHHHHhCC
Q 003290 311 LERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVP--AIIKILTEFFGK 357 (833)
Q Consensus 311 ~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP--~v~~~l~~~fg~ 357 (833)
-..+...|+++|+++++++.+|+.|...|-++..- .=.+.|.+.|+.
T Consensus 24 ~~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~ 72 (119)
T PF02801_consen 24 GAALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGD 72 (119)
T ss_dssp HHHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhcc
Confidence 34556779999999999999999999999888763 334567788863
No 218
>PLN03173 chalcone synthase; Provisional
Probab=36.56 E-value=91 Score=35.18 Aligned_cols=50 Identities=20% Similarity=0.222 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCC-ChHHHHHHHHHHhCCC
Q 003290 309 PILERVKRPLEKALAETGLSVEDVHMVEVVGSSS-RVPAIIKILTEFFGKE 358 (833)
Q Consensus 309 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-riP~v~~~l~~~fg~~ 358 (833)
.-.+-....++++|+++|+..++|++|+++..+. ..|.+--.|.+.+|.+
T Consensus 101 ~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LGl~ 151 (391)
T PLN03173 101 EVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLR 151 (391)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhCCC
Confidence 4445556678899999999999999998887554 5899999999999854
No 219
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=36.48 E-value=50 Score=31.45 Aligned_cols=20 Identities=15% Similarity=0.325 Sum_probs=18.2
Q ss_pred CeEEEEEcCccceEEEEEEC
Q 003290 1 MSVVGFDLGNESCIVAVARQ 20 (833)
Q Consensus 1 m~viGID~GTt~s~va~~~~ 20 (833)
|.|++||.|+-|...++...
T Consensus 1 mii~sIDiGikNlA~~iie~ 20 (143)
T PF04848_consen 1 MIILSIDIGIKNLAYCIIEF 20 (143)
T ss_pred CeEEEEecCCCceeEEEEEc
Confidence 88999999999999998863
No 220
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=36.20 E-value=2.4e+02 Score=28.98 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhC
Q 003290 309 PILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFG 356 (833)
Q Consensus 309 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg 356 (833)
.+|.-+.+.-++++..++ -+.|++|||...--.+|++......
T Consensus 237 tvFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~ 279 (336)
T KOG2708|consen 237 TVFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCS 279 (336)
T ss_pred HHHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHH
Confidence 455555666667766654 3679999999999999999988773
No 221
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=35.66 E-value=4.6e+02 Score=26.20 Aligned_cols=113 Identities=21% Similarity=0.230 Sum_probs=58.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhhhcCCC
Q 003290 576 YGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGED 655 (833)
Q Consensus 576 ~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~ 655 (833)
|..++.+...........+.. ....++.-+-.++..|...-...-..++|..+...+.+++.
T Consensus 56 YWsFps~~~~~~~~~~~~l~~----------~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~-------- 117 (188)
T PF03962_consen 56 YWSFPSQAKQKRQNKLEKLQK----------EIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKK-------- 117 (188)
T ss_pred EEecChHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH--------
Confidence 345777776665555544433 22223333333344443222222233677777766665543
Q ss_pred CCHHHHHHHHHHHHhccchHHHHHHhhhcchHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 003290 656 ETKGVYVAKLEELKKQGDPIEERYKEFTDRSSVIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWVREK 735 (833)
Q Consensus 656 a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~ 735 (833)
++.+|++-.. .-...=|..++.++..+..++..+..|.++. .-+..|+..+
T Consensus 118 --------~~~~l~~el~------~~~~~Dp~~i~~~~~~~~~~~~~anrwTDNI---------------~~l~~~~~~k 168 (188)
T PF03962_consen 118 --------ELKELKKELE------KYSENDPEKIEKLKEEIKIAKEAANRWTDNI---------------FSLKSYLKKK 168 (188)
T ss_pred --------HHHHHHHHHH------HHHhcCHHHHHHHHHHHHHHHHHHHHHHhhH---------------HHHHHHHHHh
Confidence 2222222221 1112357888888888888887776655443 5557777654
No 222
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=35.61 E-value=1e+03 Score=30.25 Aligned_cols=112 Identities=17% Similarity=0.217 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHhccchHHHHHHhhhcchH----HHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHH-
Q 003290 657 TKGVYVAKLEELKKQGDPIEERYKEFTDRSS----VIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAW- 731 (833)
Q Consensus 657 ~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~----a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~W- 731 (833)
..+.+.+++..++....|+..-+.....+-+ .+..+..-|+.....+.+...-.-|+.+-.+. ..+.++..+.-
T Consensus 756 ~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s~e~~~~HyE~~~K~-~l~~l~~~E~~~ 834 (1074)
T KOG0250|consen 756 PLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLRSAEDEKRHYEDKLKS-RLEELKQKEVEK 834 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHH-hhHHHHHHHHHH
Confidence 3444555555555555555443333322211 22222223332222233322233355333332 55555444433
Q ss_pred --HHHHHHHhhcCCCCCCCcc---------cHHHHHHHHHHHHHHhHhh
Q 003290 732 --VREKKQQQDALPKYAAPVL---------LLGDVRRKAEALDRFCRPI 769 (833)
Q Consensus 732 --l~~~~~~q~~~~~~~dP~~---------~~~di~~k~~~l~~~~~~l 769 (833)
+.+....+...+.+..|-. ++++|...++.|.+.|...
T Consensus 835 ~~~e~~~~e~~~ka~~~cp~~~~ei~~~~~~~~eik~ei~rlk~~i~~~ 883 (1074)
T KOG0250|consen 835 VNLEEPRAEEDQKARTECPEEGIEIEALGKTVAEIKREIKRLKRQIQMC 883 (1074)
T ss_pred HhhhcchhhhCchhhhhCccccchhhcccchHHHHHHHHHHHHHHHHHH
Confidence 4444556666667777777 3688888888888877653
No 223
>PLN03170 chalcone synthase; Provisional
Probab=35.51 E-value=1.7e+02 Score=33.12 Aligned_cols=52 Identities=19% Similarity=0.210 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCC-ChHHHHHHHHHHhCCC
Q 003290 307 SAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSS-RVPAIIKILTEFFGKE 358 (833)
Q Consensus 307 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-riP~v~~~l~~~fg~~ 358 (833)
.+...+-....++++|+++|++.++|++|+++-.+. .+|.+.-.|.+.+|.+
T Consensus 103 ~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~ 155 (401)
T PLN03170 103 VVEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLR 155 (401)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhCcC
Confidence 334455566778899999999999999998877544 6999999999999854
No 224
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=35.50 E-value=1.2e+02 Score=34.78 Aligned_cols=63 Identities=13% Similarity=0.060 Sum_probs=44.0
Q ss_pred cCccCHHHHHHHHHHHHHcCCc---cEEeechhHHHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEe
Q 003290 145 PVYFTDLQRRAVIDAATIAGLH---PLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFK 214 (833)
Q Consensus 145 P~~f~~~qR~al~~Aa~~AGl~---~~~li~EptAaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~ 214 (833)
+.-....--+.+..|.+.-|+. ++.++|+.++..++..+.. ++.++-+=+|.||--+-+.+..
T Consensus 186 ~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~-------~~~~igvI~GTGtNacY~e~~~ 251 (474)
T KOG1369|consen 186 TDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYED-------PNCEIGVIFGTGTNACYMEDMR 251 (474)
T ss_pred hhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecC-------CCcEEEEEECCCccceeeeecc
Confidence 3333444557777888877775 7889999999877654322 4667777789988777666655
No 225
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=35.19 E-value=2.3e+02 Score=27.31 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=28.0
Q ss_pred HHHhccchHHHHHHhhhcchHHHHHHHHHHHHHHH
Q 003290 667 ELKKQGDPIEERYKEFTDRSSVIDQLAYCINSYRE 701 (833)
Q Consensus 667 ~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~ 701 (833)
-|.-+..|++.++.+ .++.|++.|+.++..+.+
T Consensus 12 ~L~~li~Pvl~eL~~--~d~~A~q~Lr~Af~kAE~ 44 (154)
T PF06840_consen 12 ALQCLIRPVLDELEQ--KDSDAIQTLRAAFTKAEK 44 (154)
T ss_dssp HHHHTHHHHHHHHHT--THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHH
Confidence 477888999999888 677799999999988775
No 226
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=35.07 E-value=3.8e+02 Score=29.65 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=32.7
Q ss_pred CccEEEEeCCCCCh-HHHHHHHH---HHhC---CCCCCCCCchhHHHhHHHHh
Q 003290 331 DVHMVEVVGSSSRV-PAIIKILT---EFFG---KEPRRTMNASECVARGCALQ 376 (833)
Q Consensus 331 ~i~~ViLvGG~sri-P~v~~~l~---~~fg---~~~~~~~npdeava~Gaa~~ 376 (833)
.++.|+++|+..|. |...+.|. .++. .+....-+...+-|+||.+.
T Consensus 287 ~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~ 339 (341)
T PF03630_consen 287 GVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLK 339 (341)
T ss_dssp T--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHT
T ss_pred CCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHh
Confidence 57899999999875 67788887 5553 23344557888999999875
No 227
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.98 E-value=7.3e+02 Score=30.22 Aligned_cols=16 Identities=19% Similarity=0.090 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhccc
Q 003290 658 KGVYVAKLEELKKQGD 673 (833)
Q Consensus 658 ~~~~~~kl~~L~~~~~ 673 (833)
.+.++.|+++|.....
T Consensus 446 letLn~k~qqls~kl~ 461 (1118)
T KOG1029|consen 446 LETLNFKLQQLSGKLQ 461 (1118)
T ss_pred HHHHHHHHHHHhhhhh
Confidence 3444555555544433
No 228
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=34.79 E-value=1.1e+02 Score=32.45 Aligned_cols=48 Identities=10% Similarity=0.095 Sum_probs=37.0
Q ss_pred CCCCccEEEEeCCCCChHHHHHHHHHHhC--CC--CCCCCCchhHHHhHHHH
Q 003290 328 SVEDVHMVEVVGSSSRVPAIIKILTEFFG--KE--PRRTMNASECVARGCAL 375 (833)
Q Consensus 328 ~~~~i~~ViLvGG~sriP~v~~~l~~~fg--~~--~~~~~npdeava~Gaa~ 375 (833)
-...+|.|+|+||..+...+-++|.++.. .+ +.-.-|-.+|.|.|+..
T Consensus 293 L~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 293 LKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred cCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 34679999999999999999999998874 23 33444666789999853
No 229
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=34.71 E-value=2.6e+02 Score=29.47 Aligned_cols=114 Identities=17% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCC-CcccHHHHHHHHHHHHHHHHhhhccCc
Q 003290 176 ATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDR-SVGGRDFDEVLFQHFAAKFKEEYKIDV 254 (833)
Q Consensus 176 AaAl~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~-~lGG~~~D~~l~~~l~~~~~~k~~~~~ 254 (833)
++|++..... +..++|+|+|--+|=..| ..+. ++||. +
T Consensus 111 ~n~vaA~~~~-------~~~~vVVD~GTA~Tid~v-------------~~~~~~lGG~---------------------I 149 (251)
T COG1521 111 ANAVAAYHKY-------GKAVVVVDFGTATTIDLV-------------DEGGRYLGGA---------------------I 149 (251)
T ss_pred HHHHHHHHHc-------CCcEEEEEcCCeEEEEEE-------------cCCCcEeeeE---------------------e
Q ss_pred cCCHHHHHHHHHHHHHHhhhcCCCCceeEEEeccccCccceEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccE
Q 003290 255 SQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHM 334 (833)
Q Consensus 255 ~~~~~~~~rL~~~aek~K~~LS~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ 334 (833)
.--...+.+-+. ...+|.-...-.....-+. ++..+.+...++-.....|+..+++.......=..
T Consensus 150 ~PGi~l~~~aL~-~~aa~lp~~~~~~~~~~~g-------------k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~~~ 215 (251)
T COG1521 150 LPGITLSFEALF-ARAAKLPRVEIARPESVPG-------------KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKGGDA 215 (251)
T ss_pred ccCHHHHHHHHH-HHHhcCCcccccCccccCC-------------cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCe
Q ss_pred EEEeCCCCCh
Q 003290 335 VEVVGSSSRV 344 (833)
Q Consensus 335 ViLvGG~sri 344 (833)
++++||..++
T Consensus 216 ~vltGg~~~~ 225 (251)
T COG1521 216 VVLTGGLAKL 225 (251)
T ss_pred EEEeCCchHh
No 230
>PRK13326 pantothenate kinase; Reviewed
Probab=34.13 E-value=40 Score=35.73 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=18.4
Q ss_pred eEEEEEcCccceEEEEEECCc
Q 003290 2 SVVGFDLGNESCIVAVARQRG 22 (833)
Q Consensus 2 ~viGID~GTt~s~va~~~~~~ 22 (833)
.++.||.|+|+++++++.+++
T Consensus 7 ~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 7 SQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred EEEEEEeCCCeEEEEEEECCE
Confidence 478999999999999998654
No 231
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.96 E-value=97 Score=28.77 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=19.1
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHH
Q 003290 644 ETEDWLYEDGEDETKGVYVAKLE 666 (833)
Q Consensus 644 e~~~WL~~~g~~a~~~~~~~kl~ 666 (833)
..++||++|++..|.+.|++|..
T Consensus 90 knE~WleEDe~~iTpE~fk~Rm~ 112 (156)
T COG4296 90 KNEDWLEEDEQPITPESFKERMA 112 (156)
T ss_pred chhhhhhccCCccCHHHHHHHhh
Confidence 45789999999999999987653
No 232
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=33.89 E-value=2.8e+02 Score=30.03 Aligned_cols=56 Identities=23% Similarity=0.266 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-Ccc-----cHHHHHHHHHHHHHHhHhhhc
Q 003290 715 IAEKQKVLNECADAEAWVREKKQQQDALPKYAA-PVL-----LLGDVRRKAEALDRFCRPIMT 771 (833)
Q Consensus 715 ~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~d-P~~-----~~~di~~k~~~l~~~~~~l~~ 771 (833)
+++-+.+..++.|+...-...-+.+.. +..+. -++ -+..+++|.++|.-+++.++.
T Consensus 161 eeesq~LnrELaE~layqq~L~~eyQa-tf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQ 222 (401)
T PF06785_consen 161 EEESQTLNRELAEALAYQQELNDEYQA-TFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQ 222 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666665554443333322 11111 112 234678889888888888773
No 233
>PLN03172 chalcone synthase family protein; Provisional
Probab=33.52 E-value=1e+02 Score=34.89 Aligned_cols=53 Identities=19% Similarity=0.229 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCC-ChHHHHHHHHHHhCCC
Q 003290 306 ISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSS-RVPAIIKILTEFFGKE 358 (833)
Q Consensus 306 l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-riP~v~~~l~~~fg~~ 358 (833)
..+...+-....++++|+++|+..++|++|+++..+. .+|.+--.|.+.+|.+
T Consensus 98 ~~~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LGl~ 151 (393)
T PLN03172 98 VVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLK 151 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhCCC
Confidence 3344455566678899999999999999998777655 6999999999999854
No 234
>PLN02669 xylulokinase
Probab=33.50 E-value=36 Score=40.35 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=17.2
Q ss_pred eEEEEEcCccceEEEEEECC
Q 003290 2 SVVGFDLGNESCIVAVARQR 21 (833)
Q Consensus 2 ~viGID~GTt~s~va~~~~~ 21 (833)
-+||||+||+.+++++++..
T Consensus 9 ~~LGiD~GT~s~Ka~l~d~~ 28 (556)
T PLN02669 9 LFLGFDSSTQSLKATVLDSN 28 (556)
T ss_pred eEEEEecccCCeEEEEEcCC
Confidence 37999999999999988643
No 235
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=33.38 E-value=3.9e+02 Score=26.14 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhHhhh
Q 003290 728 AEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCRPIM 770 (833)
Q Consensus 728 ~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~ 770 (833)
...|+++....-...+... ...++...+..++.+...+.
T Consensus 118 l~~wl~~~e~~l~~~~~~~----~~~~~~~~l~~~~~~~~~~~ 156 (213)
T cd00176 118 LEQWLEEKEAALASEDLGK----DLESVEELLKKHKELEEELE 156 (213)
T ss_pred HHHHHHHHHHHhcCcccCC----CHHHHHHHHHHHHHHHHHHH
Confidence 7899988776555433322 56677766666666655554
No 236
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=33.23 E-value=6.7e+02 Score=32.54 Aligned_cols=45 Identities=22% Similarity=0.264 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003290 578 GMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYVYDMRNKL 622 (833)
Q Consensus 578 ~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~L 622 (833)
.+++.+...+.+.+......+....+..+....++.-+..+++.+
T Consensus 149 ~~~~~~r~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~ 193 (1164)
T TIGR02169 149 SMSPVERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLII 193 (1164)
T ss_pred CCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888777777665555555555554555555555555555555
No 237
>PRK13324 pantothenate kinase; Reviewed
Probab=32.46 E-value=44 Score=35.29 Aligned_cols=20 Identities=20% Similarity=0.312 Sum_probs=17.6
Q ss_pred EEEEEcCccceEEEEEECCc
Q 003290 3 VVGFDLGNESCIVAVARQRG 22 (833)
Q Consensus 3 viGID~GTt~s~va~~~~~~ 22 (833)
++.||.|+|+++.+++.+++
T Consensus 2 iL~iDiGNT~ik~gl~~~~~ 21 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGDR 21 (258)
T ss_pred EEEEEeCCCceEEEEEECCE
Confidence 78999999999999998543
No 238
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=32.18 E-value=29 Score=32.47 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=15.0
Q ss_pred EEEEcCccceEEEEEEC
Q 003290 4 VGFDLGNESCIVAVARQ 20 (833)
Q Consensus 4 iGID~GTt~s~va~~~~ 20 (833)
+|||||+..+.+|+.++
T Consensus 1 laiD~G~kriGvA~~d~ 17 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI 17 (130)
T ss_pred CeEccCCCeEEEEEECC
Confidence 69999999999998754
No 239
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=31.51 E-value=3.2e+02 Score=29.69 Aligned_cols=102 Identities=18% Similarity=0.124 Sum_probs=57.3
Q ss_pred CcEEEEecCccCHHHHHHHHHHHHHcCCccEEeechhHHH-HHHHhhhcCCCCCCCCceEEEEEeCCceEEEEEEEEeCC
Q 003290 138 VDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTAT-ALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKG 216 (833)
Q Consensus 138 ~~~VITVP~~f~~~qR~al~~Aa~~AGl~~~~li~EptAa-Al~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~ 216 (833)
....+|-|.--....|..+....- --++|..|.----|+ ||+..+....... ..-.-+|+|-|.|-+-|-.+. .|
T Consensus 107 h~fLlteppln~penreytaeImf-EsfnvpglyiAVqavLALaaswts~~v~e-r~ltG~VidsGdgvThvipva--Eg 182 (415)
T KOG0678|consen 107 HYFLLTEPPLNQPENREYTAEIMF-ESFNVPGLYIAVQAVLALAASWTSRQVGE-RFLTGIVIDSGDGVTHVIPVA--EG 182 (415)
T ss_pred ceEEecCCCCCCchhhHHHHHhhh-hhccCchHHHHHHHHHHHHHHHHHhhhhh-heeeeEEEecCCCeeEEEEee--cc
Confidence 356788888877887877654421 124444443211111 2222333222211 123457999999988765543 33
Q ss_pred eEEEEEeeCCCCcccHHHHHHHHHHHHH
Q 003290 217 QLKILGHSFDRSVGGRDFDEVLFQHFAA 244 (833)
Q Consensus 217 ~~~vl~~~~d~~lGG~~~D~~l~~~l~~ 244 (833)
+-+.++-....+.|++++.-+...+.+
T Consensus 183 -yVigScik~iPiagrdiT~fiQ~llRe 209 (415)
T KOG0678|consen 183 -YVIGSCIKHIPIAGRDITYFIQQLLRE 209 (415)
T ss_pred -eEEeeeeccccccCCchhHHHHHHhhC
Confidence 224444556889999999887776643
No 240
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=31.43 E-value=15 Score=41.59 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=39.8
Q ss_pred CccEEEEeCCCCChHHHHHHHHHHhC------CC---------CCCCCCchhHHHhHHHHhchhhc
Q 003290 331 DVHMVEVVGSSSRVPAIIKILTEFFG------KE---------PRRTMNASECVARGCALQCAILS 381 (833)
Q Consensus 331 ~i~~ViLvGG~sriP~v~~~l~~~fg------~~---------~~~~~npdeava~Gaa~~aa~ls 381 (833)
-.++|.+|||+...|++...|++..- .. .-+..||...+=.|||++|.+-.
T Consensus 526 l~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~ 591 (618)
T KOG0797|consen 526 LFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDF 591 (618)
T ss_pred hhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHH
Confidence 35789999999999999999998763 11 12446888888899999987644
No 241
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=31.39 E-value=2.6e+02 Score=26.72 Aligned_cols=29 Identities=14% Similarity=0.248 Sum_probs=23.8
Q ss_pred EEEEEeCCceEEEEEEEEeCCeEEEEEee
Q 003290 196 VAFVDIGHASLQVCIAGFKKGQLKILGHS 224 (833)
Q Consensus 196 vlv~D~Gggt~dvsvv~~~~~~~~vl~~~ 224 (833)
||-+|-|-.++=.+|++..++.++.+.++
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i~~G 29 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLIDYG 29 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEEEeC
Confidence 57899999999999999998888888775
No 242
>PRK00292 glk glucokinase; Provisional
Probab=31.02 E-value=43 Score=36.42 Aligned_cols=50 Identities=26% Similarity=0.158 Sum_probs=29.8
Q ss_pred HHcCCccEEeechhHHHHHHHhhhcC------CCCCC-CCceEEEEEeCCceEEEEEE
Q 003290 161 TIAGLHPLRLFHETTATALAYGIYKT------DLPEN-DQLNVAFVDIGHASLQVCIA 211 (833)
Q Consensus 161 ~~AGl~~~~li~EptAaAl~y~~~~~------~~~~~-~~~~vlv~D~Gggt~dvsvv 211 (833)
+..|++.+.+.|+-.|+|++-..... .-... ....++++-+|.|- -.+++
T Consensus 88 ~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTGi-G~giv 144 (316)
T PRK00292 88 QELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTGL-GVAGL 144 (316)
T ss_pred HHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCcc-eEEEE
Confidence 34588767899999999987433100 00100 12578888888663 34443
No 243
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=30.81 E-value=1.7e+02 Score=34.97 Aligned_cols=64 Identities=17% Similarity=0.275 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhhhcCC-------CC---CHHHHHHHHHHHHhccchH
Q 003290 606 DRKNAVEAYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGE-------DE---TKGVYVAKLEELKKQGDPI 675 (833)
Q Consensus 606 ~akN~LEs~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~-------~a---~~~~~~~kl~~L~~~~~pi 675 (833)
.+..+|+..|-.+|..+. ++.++....+.+.+.||...-. .+ ..++...+-++|.+.+.||
T Consensus 652 k~~d~~~~~i~~~r~~~~---------~~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~~pv~~~e~~~~~~~l~~~~~~i 722 (727)
T KOG0103|consen 652 KAFDELGKKIQEIRKAIE---------SEMEKVLLEIEEAEKWLERKSNKQNKLSKTADPVPSSEIESEAKELNNTCSDI 722 (727)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCchHHHHHhhhhhccccccc
Confidence 344445555544444443 2788899999999999987411 12 2378888999999999998
Q ss_pred HHH
Q 003290 676 EER 678 (833)
Q Consensus 676 ~~R 678 (833)
..+
T Consensus 723 ~~~ 725 (727)
T KOG0103|consen 723 ISK 725 (727)
T ss_pred ccc
Confidence 764
No 244
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=30.32 E-value=4.5e+02 Score=31.84 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=8.3
Q ss_pred HHHHHHhHhhhcCC
Q 003290 760 EALDRFCRPIMTKP 773 (833)
Q Consensus 760 ~~l~~~~~~l~~k~ 773 (833)
+.+...+++++.|.
T Consensus 509 ~~~~~~f~~l~~k~ 522 (650)
T TIGR03185 509 EEITKSFKKLMRKH 522 (650)
T ss_pred HHHHHHHHHHhccc
Confidence 45566666676653
No 245
>PLN03168 chalcone synthase; Provisional
Probab=30.30 E-value=1.1e+02 Score=34.38 Aligned_cols=56 Identities=16% Similarity=0.251 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCC-CChHHHHHHHHHHhCCC
Q 003290 303 FEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSS-SRVPAIIKILTEFFGKE 358 (833)
Q Consensus 303 fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-sriP~v~~~l~~~fg~~ 358 (833)
.+-..+...+-..+..+++|+++|++.++|++|+++-.+ -.+|.+--.|.+.+|.+
T Consensus 94 ~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~ 150 (389)
T PLN03168 94 HDIVVVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLGLK 150 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhCcC
Confidence 333344555556777899999999999999999877433 35899999999999854
No 246
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=29.66 E-value=2.9e+02 Score=33.58 Aligned_cols=68 Identities=12% Similarity=0.143 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCcccHHHHHHHH
Q 003290 691 QLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQDALP-KYAAPVLLLGDVRRKA 759 (833)
Q Consensus 691 ~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~-~~~dP~~~~~di~~k~ 759 (833)
.++..|..++..++- .-.|..|-..-+..|..++++...++-+..+.--+.+ .|.-|.|+...|-.++
T Consensus 106 ~vK~~L~~vK~qvei-AmE~~EL~~~vlg~l~~EIe~~~~~vfemeE~R~~Sp~~~~lp~~~Le~Ive~~ 174 (683)
T PF08580_consen 106 DVKKTLISVKKQVEI-AMEWEELWNDVLGDLDNEIEECIRLVFEMEEKRHSSPVRHGLPIFELETIVEEM 174 (683)
T ss_pred HHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccCCCcccHHHHHHhc
Confidence 344445444443321 1233345567778888888888888888877666666 6668888888777666
No 247
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=29.41 E-value=2.5e+02 Score=32.33 Aligned_cols=31 Identities=23% Similarity=0.514 Sum_probs=25.0
Q ss_pred CCCCC-CCceEEEEEeCCceEEEEEEEEeCCe
Q 003290 187 DLPEN-DQLNVAFVDIGHASLQVCIAGFKKGQ 217 (833)
Q Consensus 187 ~~~~~-~~~~vlv~D~Gggt~dvsvv~~~~~~ 217 (833)
++|.. +...++.+|+||..+-|..+.+.++.
T Consensus 78 ~lP~G~E~G~~lalDLGGTn~Rv~~v~L~g~~ 109 (474)
T KOG1369|consen 78 DLPDGTEKGKFLALDLGGTNFRVLLVKLGGGR 109 (474)
T ss_pred cCCCCCcCCCEEEEecCCCceEEEEEEecCCc
Confidence 34542 35679999999999999999999873
No 248
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=29.32 E-value=1.3e+03 Score=29.62 Aligned_cols=168 Identities=14% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhH-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhhhc--CCCCC
Q 003290 581 PVDVQKAVEKEFEMAL-QDRVMEETKDRKNAVEAYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYED--GEDET 657 (833)
Q Consensus 581 ~~ei~~~~~~~~~~~~-~D~~~~~~~~akN~LEs~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~--g~~a~ 657 (833)
.+.+.....++.++.. .++.++++.++.+.+|.+=-.....-. +-+.|...+...+.-|++. ..+-.
T Consensus 404 ~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~----------ei~~L~~~~~~~~~~l~e~~~~l~~~ 473 (1293)
T KOG0996|consen 404 EEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQT----------EIEQLEELLEKEERELDEILDSLKQE 473 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred HHHHHHHHHHHHhccchHHHHHHhhhcchHHHH-----------HHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHH
Q 003290 658 KGVYVAKLEELKKQGDPIEERYKEFTDRSSVID-----------QLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECA 726 (833)
Q Consensus 658 ~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~-----------~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~ 726 (833)
.+.+.+++..+++-..|...+..++..+-+..+ .+...+..++..+......+ .+....|.+.-.
T Consensus 474 t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~----~e~~~~l~~~k~ 549 (1293)
T KOG0996|consen 474 TEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESL----KEKKTELDDLKE 549 (1293)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhHhhhcC
Q 003290 727 DAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCRPIMTK 772 (833)
Q Consensus 727 ~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~k 772 (833)
++.+|-.+....-+.++ .+......+...+..+..+
T Consensus 550 ~l~~~k~e~~~~~k~l~----------~~~~e~~~~~~~~~~~rqr 585 (1293)
T KOG0996|consen 550 ELPSLKQELKEKEKELP----------KLRKEERNLKSQLNKLRQR 585 (1293)
T ss_pred hhhhHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHH
No 249
>PRK04863 mukB cell division protein MukB; Provisional
Probab=29.23 E-value=1.6e+03 Score=30.35 Aligned_cols=17 Identities=12% Similarity=0.171 Sum_probs=11.7
Q ss_pred CCHHHHHHHHHHHHHHh
Q 003290 579 MLPVDVQKAVEKEFEMA 595 (833)
Q Consensus 579 ls~~ei~~~~~~~~~~~ 595 (833)
-..+++..+++++..++
T Consensus 276 r~~eERR~liEEAag~r 292 (1486)
T PRK04863 276 RHANERRVHLEEALELR 292 (1486)
T ss_pred hCHHHHHHHHHHHHHHH
Confidence 45677777777776555
No 250
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=29.19 E-value=73 Score=35.36 Aligned_cols=44 Identities=11% Similarity=0.124 Sum_probs=33.6
Q ss_pred CccEEEEeCCCCChHHHHHHHHHHhC--CCC--CCCCCchhHHHhHHH
Q 003290 331 DVHMVEVVGSSSRVPAIIKILTEFFG--KEP--RRTMNASECVARGCA 374 (833)
Q Consensus 331 ~i~~ViLvGG~sriP~v~~~l~~~fg--~~~--~~~~npdeava~Gaa 374 (833)
+++.|+|.||.+..+.+.+.|.+.+. .++ ...-+-.++.|.||.
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~ 340 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGAL 340 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHH
Confidence 58999999999999999999998885 333 233345678888885
No 251
>PRK13320 pantothenate kinase; Reviewed
Probab=29.00 E-value=57 Score=34.17 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.2
Q ss_pred eEEEEEcCccceEEEEEECCc
Q 003290 2 SVVGFDLGNESCIVAVARQRG 22 (833)
Q Consensus 2 ~viGID~GTt~s~va~~~~~~ 22 (833)
-++.||.|+|+++.+++.++.
T Consensus 3 M~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred eEEEEEeCCCcEEEEEEECCE
Confidence 378999999999999998653
No 252
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=28.72 E-value=52 Score=33.47 Aligned_cols=32 Identities=25% Similarity=0.218 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCCc---cEEeechhHHHHHHHhh
Q 003290 152 QRRAVIDAATIAGLH---PLRLFHETTATALAYGI 183 (833)
Q Consensus 152 qR~al~~Aa~~AGl~---~~~li~EptAaAl~y~~ 183 (833)
-.+.+.+|....|++ ++.++|+.+|..++.++
T Consensus 170 v~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y 204 (206)
T PF00349_consen 170 VVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAY 204 (206)
T ss_dssp HHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHT
T ss_pred cchhHHHHHHHhcccCcceEEEEECCHHHhhhhhc
Confidence 345566666666665 77899999999887653
No 253
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=28.49 E-value=2e+02 Score=32.70 Aligned_cols=54 Identities=24% Similarity=0.434 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhC
Q 003290 303 FEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFG 356 (833)
Q Consensus 303 fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg 356 (833)
++++-+-+++.+..++.+++.++++..++|..|+++|-.+-.-.+.-.=-+.++
T Consensus 55 ~~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllGl~~~~L~ 108 (412)
T PF14574_consen 55 LEELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLGLDPEGLG 108 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT---GGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcCCChHHhc
Confidence 455666677888889999999999999999999999987655554433333333
No 254
>PRK12704 phosphodiesterase; Provisional
Probab=27.83 E-value=5e+02 Score=30.52 Aligned_cols=61 Identities=18% Similarity=0.257 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhccchHHHHHHhhhcchHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHH
Q 003290 660 VYVAKLEELKKQGDPIEERYKEFTDRSSVIDQLAYCINSYREAALSSDPKFDHIDIAEKQK 720 (833)
Q Consensus 660 ~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~ 720 (833)
.+.++.+.|.+.-..+..|..+...+-+.++.....+..........-+..+.+|.++-+.
T Consensus 97 ~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea~~ 157 (520)
T PRK12704 97 NLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKE 157 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 3455555555555555555555555555555555544443332222223445566665443
No 255
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=27.49 E-value=1.2e+02 Score=32.58 Aligned_cols=47 Identities=23% Similarity=0.277 Sum_probs=29.6
Q ss_pred CccEEEEeCCCCChHHHHHHHHHHhCC---------CCCCCCCchhHHHhHHHHhc
Q 003290 331 DVHMVEVVGSSSRVPAIIKILTEFFGK---------EPRRTMNASECVARGCALQC 377 (833)
Q Consensus 331 ~i~~ViLvGG~sriP~v~~~l~~~fg~---------~~~~~~npdeava~Gaa~~a 377 (833)
+++.|+|-||.+..+.+.+.|++.+.. .+......+.+.++|||..+
T Consensus 245 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 245 DPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred CCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 467788877767656555555555421 12233455678999999765
No 256
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.24 E-value=1.6e+02 Score=30.89 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=44.9
Q ss_pred eEEEEEeCCceEEEEEEEEeC-CeE----------------------EEEEeeCCCCcccHHHHHHHHHHHHHHHHhhhc
Q 003290 195 NVAFVDIGHASLQVCIAGFKK-GQL----------------------KILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYK 251 (833)
Q Consensus 195 ~vlv~D~Gggt~dvsvv~~~~-~~~----------------------~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~ 251 (833)
++|++|+|.||.|+-.+.-.. +.+ .-+... +...||--.+.++.+||.. +
T Consensus 2 kila~DvG~GTqDi~~~d~~~EnSl~mVmPspt~~~A~R~R~~~~~g~~l~l~-G~~MGGGp~travrrhlk~------G 74 (342)
T COG4012 2 KILAIDVGVGTQDIVAYDGDPENSLRMVMPSPTSTLAQRLRFMLREGPYLALI-GVPMGGGPTTRAVRRHLKK------G 74 (342)
T ss_pred ceEEEEecCCceeEEEecCCcccceeEeecCchHHHHHHHHHHhccCCcEEEE-eeecCCChhhHHHHHHHhc------C
Confidence 589999999999988764321 000 011222 3568899999999999864 2
Q ss_pred cCccCCHHHHHHHHHHHHHHhh
Q 003290 252 IDVSQNARASLRLRVACEKLKK 273 (833)
Q Consensus 252 ~~~~~~~~~~~rL~~~aek~K~ 273 (833)
..+-..+++-.-|....|+++.
T Consensus 75 ~rVyatedAAlT~hddleRv~e 96 (342)
T COG4012 75 TRVYATEDAALTLHDDLERVEE 96 (342)
T ss_pred CeeEechhhhhhhhcCHHHHHh
Confidence 2333344555555566666664
No 257
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=27.23 E-value=8.4e+02 Score=31.93 Aligned_cols=74 Identities=15% Similarity=0.151 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHHHHhHhhHHHHHH-------HHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhh
Q 003290 578 GMLPVDVQKAVEKEFEMALQDRVMEET-------KDRKNAVEAYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLY 650 (833)
Q Consensus 578 ~ls~~ei~~~~~~~~~~~~~D~~~~~~-------~~akN~LEs~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~ 650 (833)
.+.+.++..+++++.-...-+..+.+. .+-.+.++..++.++..|+.--...-.......+.+.+..++.|++
T Consensus 151 ~~kp~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~ 230 (1163)
T COG1196 151 NAKPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALL 230 (1163)
T ss_pred cCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888888888776655544443332 2334445555666666664211223334555667777777777776
Q ss_pred h
Q 003290 651 E 651 (833)
Q Consensus 651 ~ 651 (833)
-
T Consensus 231 ~ 231 (1163)
T COG1196 231 L 231 (1163)
T ss_pred H
Confidence 4
No 258
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=27.01 E-value=7.5e+02 Score=29.39 Aligned_cols=180 Identities=19% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHH--HHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhhh--cCCCC
Q 003290 581 PVDVQKAVEKEFEMALQDRVMEE--TKDRKNAVEAYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYE--DGEDE 656 (833)
Q Consensus 581 ~~ei~~~~~~~~~~~~~D~~~~~--~~~akN~LEs~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~--~g~~a 656 (833)
+.+++.+...-.+|..+.-.... -....+.++.-+-.....|. .+.-++-+.....+.+-.++||+ ..+-.
T Consensus 225 P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~-----~l~l~~~~~~~~~i~~~Id~lYd~le~E~~ 299 (560)
T PF06160_consen 225 PDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLK-----NLELDEVEEENEEIEERIDQLYDILEKEVE 299 (560)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CHHHHHHHHHHHHhccchHHHHHHhhhcchHHHH---------------------HHHHHHHHHHHHhhcCCCCCCCCCH
Q 003290 657 TKGVYVAKLEELKKQGDPIEERYKEFTDRSSVID---------------------QLAYCINSYREAALSSDPKFDHIDI 715 (833)
Q Consensus 657 ~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~---------------------~l~~~l~~~~~~~~~~~~~~~~~~~ 715 (833)
.+..+.+.+..+.....-+.....+....=..+. .+...+......+.+....|+.+-
T Consensus 300 Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~- 378 (560)
T PF06160_consen 300 AKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQ- 378 (560)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHH-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhHhhhcC
Q 003290 716 AEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCRPIMTK 772 (833)
Q Consensus 716 ~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~k 772 (833)
+.+..+...+.++..+..+....-..+...+ .+.+.++..+...+..+.++
T Consensus 379 ~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE------~~Ar~~l~~~~~~l~~ikR~ 429 (560)
T PF06160_consen 379 EELEEIEEQLEEIEEEQEEINESLQSLRKDE------KEAREKLQKLKQKLREIKRR 429 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
No 259
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=26.90 E-value=6.1e+02 Score=29.78 Aligned_cols=30 Identities=13% Similarity=0.244 Sum_probs=19.3
Q ss_pred HHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhhhc
Q 003290 618 MRNKLCDKYQDFVTDSERELFTSKLQETEDWLYED 652 (833)
Q Consensus 618 ~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~ 652 (833)
-|++|+.+++ .|.++|...-+.+..|+..+
T Consensus 39 qkeK~e~DLK-----kEIKKLQRlRdQIKtW~ss~ 68 (575)
T KOG2150|consen 39 QKEKLESDLK-----KEIKKLQRLRDQIKTWQSSS 68 (575)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHhhhccc
Confidence 3556654442 34566777778888999754
No 260
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=26.81 E-value=1.4e+02 Score=33.74 Aligned_cols=48 Identities=6% Similarity=-0.002 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCC-hHHHHHHHHHHhC
Q 003290 306 ISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSR-VPAIIKILTEFFG 356 (833)
Q Consensus 306 l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr-iP~v~~~l~~~fg 356 (833)
.++-++.++.+.|-....... ..+|.|+++||.+. .+.|++.+.+.+.
T Consensus 298 a~d~~~y~i~k~Ig~~~a~l~---G~vDaivfTGGige~~~~vr~~~~~~l~ 346 (388)
T PF00871_consen 298 ALDAFAYQIAKYIGAYAAVLE---GGVDAIVFTGGIGENSALVRERICRKLW 346 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---SS-SEEEEEHHHHHHTHHHHHHHHCTGG
T ss_pred HHHHHHHHHHHHHHHHHHhhc---cCCCEEEEccccccchHHHHHHHHhhcC
Confidence 344556666666655554431 36899999999997 5789998887764
No 261
>PF01044 Vinculin: Vinculin family; InterPro: IPR006077 Vinculin is a eukaryotic protein that seems to be involved in the attachment of the actin-based microfilaments to the plasma membrane. Vinculin is located at the cytoplasmic side of focal contacts or adhesion plaques []. In addition to actin, vinculin interacts with other structural proteins such as talin and alpha-actinins. Vinculin is a large protein of 116 kDa (about a 1000 residues). Structurally the protein consists of an acidic N-terminal domain of about 90 kDa separated from a basic C-terminal domain of about 25 kDa by a proline-rich region of about 50 residues. The central part of the N-terminal domain consists of a variable number (3 in vertebrates, 2 in Caenorhabditis elegans) of repeats of a 110 amino acids domain. Alpha-catenins are evolutionary related to vinculin IPR001033 from INTERPRO []. Catenins are proteins that associate with the cytoplasmic domain of a variety of cadherins. The association of catenins to cadherins produces a complex which is linked to the actin filament network, and which seems to be of primary importance for cadherins cell-adhesion properties. Three different types of catenins seem to exist: alpha, beta, and gamma. Alpha-catenins are proteins of about 100 kDa which are evolutionary related to vinculin. In terms of their structure the most significant differences are the absence, in alpha-catenin, of the repeated domain and of the proline-rich segment.; GO: 0005198 structural molecule activity, 0007155 cell adhesion, 0015629 actin cytoskeleton; PDB: 3S90_B 1TR2_B 2IBF_A 1RKC_A 3TJ5_A 3RF3_B 4DJ9_A 2GWW_A 2HSQ_A 3TJ6_A ....
Probab=26.62 E-value=1.1e+03 Score=30.24 Aligned_cols=155 Identities=15% Similarity=0.171 Sum_probs=72.3
Q ss_pred CCCHHHHHHHHHHHHHHhHhhHHHHHHHH-----H---HHHHHHHHHHHHHHHhh---hhhccCCHHHHHHHHHHHHHHH
Q 003290 578 GMLPVDVQKAVEKEFEMALQDRVMEETKD-----R---KNAVEAYVYDMRNKLCD---KYQDFVTDSERELFTSKLQETE 646 (833)
Q Consensus 578 ~ls~~ei~~~~~~~~~~~~~D~~~~~~~~-----a---kN~LEs~iy~~r~~L~~---~~~~~~~~~er~~i~~~l~e~~ 646 (833)
|-..+.|.+.+..+..|....-..+.+.+ + -+.|-..+-.++..+.+ .+.......-...+..+|+.+.
T Consensus 313 p~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~a~~l~e~~~~l~~~v~~al~~~~~~~~~~~~~~~~~kl~qA~ 392 (968)
T PF01044_consen 313 PSLEERLERIISGAALMADSLCTRRERGEGASPQAIVLARQLAECNGELSQLVEQALQNVEKSGGAQAAHTVAGKLEQAQ 392 (968)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHCHHCHGGSHHHHHCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45566788888887777766554443333 1 11111111112222211 1111111222567888999999
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHhccchHHHHHHhhhcchHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHH
Q 003290 647 DWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEFTDRSSVIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECA 726 (833)
Q Consensus 647 ~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~ 726 (833)
.||.+-+-+ .++.....|+..+.+++.++.... .+++..+...|+
T Consensus 393 ~wl~~p~~d----------------------------d~g~g~~AL~~lv~e~~~~A~~~~-------~~~R~~Il~lc~ 437 (968)
T PF01044_consen 393 RWLANPGVD----------------------------DGGAGRQALRDLVEEARKLADSSD-------PEEREEILELCD 437 (968)
T ss_dssp HHHCSTSS------------------------------SCHHHHHHHHHHHHHHHHHHTSS-------HHHHHHHHHHHH
T ss_pred ccccccccc----------------------------cHHHHHHHHHHHHHHHHHHHhccc-------cchHHhHHHHHH
Confidence 999864211 133344455555566665554322 345556666666
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCccc--HHHHHHHHHHHHHHhHh
Q 003290 727 DAEAWVREKKQQQDALPKYAAPVLL--LGDVRRKAEALDRFCRP 768 (833)
Q Consensus 727 ~~~~Wl~~~~~~q~~~~~~~dP~~~--~~di~~k~~~l~~~~~~ 768 (833)
++..=+++ +...........|-.. ...+..+++.|.+.++.
T Consensus 438 ~i~~l~~q-L~dL~~~~~~~spea~~la~~L~~~l~~L~~~l~~ 480 (968)
T PF01044_consen 438 EIEQLTNQ-LADLEMRGEGDSPEAKALAEQLSQKLDDLRQQLQK 480 (968)
T ss_dssp HHHHHHHH-HHHHCHCSCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcch-hhhhhhccCCCcccccccccchhhhHHHHHHHHHH
Confidence 65553322 2222233333333322 12445555555555444
No 262
>PRK00404 tatB sec-independent translocase; Provisional
Probab=26.46 E-value=4.6e+02 Score=24.90 Aligned_cols=24 Identities=4% Similarity=-0.054 Sum_probs=17.5
Q ss_pred hhcchHHHHHHHHHHHHHHHHhhc
Q 003290 682 FTDRSSVIDQLAYCINSYREAALS 705 (833)
Q Consensus 682 ~~~rp~a~~~l~~~l~~~~~~~~~ 705 (833)
-+..|.+...+...+..++..+.+
T Consensus 22 PkkLP~laR~lG~~i~~~rr~~~~ 45 (141)
T PRK00404 22 PERLPGAARTAGLWIGRLKRSFNA 45 (141)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888765533
No 263
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=26.25 E-value=7.6e+02 Score=25.71 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=27.7
Q ss_pred HhhhcchHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHH
Q 003290 680 KEFTDRSSVIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNEC 725 (833)
Q Consensus 680 ~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~ 725 (833)
.|...|-..+..|...|..+.......++.|-.+.-+|+..|.+.+
T Consensus 168 ~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l 213 (247)
T PF06705_consen 168 KEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNAL 213 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 4666777778888877777766555555555444444444444444
No 264
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=26.12 E-value=6.4e+02 Score=27.80 Aligned_cols=29 Identities=21% Similarity=0.418 Sum_probs=18.0
Q ss_pred HHHHhhhhhccCCHHHHHHHHHHHHHHHHHhhhc
Q 003290 619 RNKLCDKYQDFVTDSERELFTSKLQETEDWLYED 652 (833)
Q Consensus 619 r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~ 652 (833)
|.+|+++++ .+.++|...-+.+..|+..+
T Consensus 30 ~ekle~dlk-----~~ikklq~~rdqiktw~s~~ 58 (548)
T COG5665 30 REKLESDLK-----REIKKLQKHRDQIKTWLSKE 58 (548)
T ss_pred HHHHhhHHH-----HHHHHHHHHHHHHHHhhccc
Confidence 455554432 23456666677888899765
No 265
>PHA02566 alt ADP-ribosyltransferase; Provisional
Probab=25.69 E-value=1.2e+03 Score=28.16 Aligned_cols=54 Identities=13% Similarity=0.127 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCc--ccHHHHHHHHHHHHHHhHh
Q 003290 709 KFDHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPV--LLLGDVRRKAEALDRFCRP 768 (833)
Q Consensus 709 ~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~--~~~~di~~k~~~l~~~~~~ 768 (833)
...++|.+|+..|.+-|..--.|.++.+.... +|. ..-.+++..++.|+..+..
T Consensus 421 ~~k~LT~~E~~AI~dY~~sgY~~IN~yLrG~~------~s~~~~~~~ei~k~Ik~IDsAf~k 476 (684)
T PHA02566 421 DPKKLTPAESRAIREYCASGYIDINNFLLGRY------KPEFYMDEEEAEKAIDNLDSAFKN 476 (684)
T ss_pred CcccCCHHHHHHHHHHHHhhHHHHHHHHhcCC------CcccccChHHHHHHHHHHHHHHhc
Confidence 56689999999999999999999999885322 233 3335788888888877765
No 266
>PHA02557 22 prohead core protein; Provisional
Probab=25.56 E-value=6.6e+02 Score=26.50 Aligned_cols=86 Identities=19% Similarity=0.182 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 003290 579 MLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYV-YDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDET 657 (833)
Q Consensus 579 ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~i-y~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~ 657 (833)
.+.+.++-.-.-..+++....+.....+..+.|+.+| |..|+.+-.+...-+++.+++++...+ +|-..
T Consensus 135 vpee~vdvV~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r~~i~~e~t~gLtdsQkeKv~~L~---------Egvef- 204 (271)
T PHA02557 135 VPEEKVDVVAEMEEELDEMEEELNELFEENVALEEYINEVKREVILSEVTKDLTESQKEKVASLA---------EGLEF- 204 (271)
T ss_pred CcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHH---------hccch-
Q ss_pred HHHHHHHHHHHHhccch
Q 003290 658 KGVYVAKLEELKKQGDP 674 (833)
Q Consensus 658 ~~~~~~kl~~L~~~~~p 674 (833)
-+.|..||..|...+.+
T Consensus 205 ~e~F~~kl~~i~E~v~~ 221 (271)
T PHA02557 205 SETFSKKLTAIVEMVFK 221 (271)
T ss_pred hhHHHHHHHHHHHHHHh
No 267
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.99 E-value=5.2e+02 Score=26.85 Aligned_cols=37 Identities=19% Similarity=0.443 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhHhhhcCCCC
Q 003290 723 NECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCRPIMTKPKP 775 (833)
Q Consensus 723 ~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~k~kp 775 (833)
..-.++..||...+. +|..+...++..+..|..+.+-
T Consensus 118 ~ek~e~~~wl~~~Id----------------~L~~QiE~~E~E~E~L~~~~kK 154 (233)
T PF04065_consen 118 KEKEEARDWLKDSID----------------ELNRQIEQLEAEIESLSSQKKK 154 (233)
T ss_pred HHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHhhcc
Confidence 445677899998776 7888899999999988875544
No 268
>COG5418 Predicted secreted protein [Function unknown]
Probab=24.71 E-value=2e+02 Score=27.33 Aligned_cols=70 Identities=16% Similarity=0.355 Sum_probs=43.2
Q ss_pred HHHHHHhhhcCCCC--ceeEEEecc---ccCccceEEecHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeC
Q 003290 266 VACEKLKKVLSANP--EAPLNIECL---MEEKDVRGFIKRDEFEQI-SAPILERVKRPLEKALAETGLSVEDVHMVEVVG 339 (833)
Q Consensus 266 ~~aek~K~~LS~~~--~~~~~ie~l---~~~~d~~~~itr~efe~l-~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvG 339 (833)
+.+..+++.|..|. ..-+.++|- +=+.+ +-.+||++|+.. +..++++|..+|-++|.+-. .+.| .++++|
T Consensus 29 ~~~~ev~~~l~~npk~~~IiqlPCPE~~yLg~~-R~~~tke~~d~~~yRr~c~ki~~pi~~~l~e~k--~d~~-kii~IG 104 (164)
T COG5418 29 DTAKEVRKALPSNPKDWNIIQLPCPEFEYLGWP-RPPMTKEVFDHPGYRRVCRKIADPIGRVLEEEK--PDGI-KIIFIG 104 (164)
T ss_pred HHHHHHHHhhccCCCCCceEeccCchHHhhCCC-CCCcCHHHhcchhHHHHHHHHHHHHHHHHHHhC--cCCc-eEEEEe
Confidence 35667888888874 334555542 11111 235899999865 56788888888888888743 2223 455665
No 269
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=24.70 E-value=2.2e+02 Score=32.77 Aligned_cols=46 Identities=22% Similarity=0.300 Sum_probs=34.6
Q ss_pred ceEEEEEeCCceEEEEEEEEeCCeE-EEEEeeCCCCcccHHHHHHHH
Q 003290 194 LNVAFVDIGHASLQVCIAGFKKGQL-KILGHSFDRSVGGRDFDEVLF 239 (833)
Q Consensus 194 ~~vlv~D~Gggt~dvsvv~~~~~~~-~vl~~~~d~~lGG~~~D~~l~ 239 (833)
.+=+-+|+|.+++-+-++.+..+.+ ....+....--||+++|.+..
T Consensus 164 ~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ql~~Ge~m~sr~~ 210 (614)
T COG3894 164 AYGVAVDLGTSGIRAQLVDLKSGEVVATVITSNPQLPGGEVMDSRDF 210 (614)
T ss_pred eeeeEEecccceeeeEEEeccCCcEEEeeeccCCCCCCchhhHHHHH
Confidence 4457899999999999999988754 334444455689999987763
No 270
>PRK00106 hypothetical protein; Provisional
Probab=24.59 E-value=6.5e+02 Score=29.65 Aligned_cols=74 Identities=22% Similarity=0.249 Sum_probs=40.3
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHhccchHHHHHHhhhcchHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHH
Q 003290 642 LQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEFTDRSSVIDQLAYCINSYREAALSSDPKFDHIDIAEKQK 720 (833)
Q Consensus 642 l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~ 720 (833)
|..-+++|..- .+.+.++.+.|.+.-..+..|..+...+-+.++.....+..........-+..+.+|.++-+.
T Consensus 99 L~qrE~rL~qR-----EE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~eak~ 172 (535)
T PRK00106 99 LKQIESRLTER-----ATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAEARE 172 (535)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 44445566432 234566666666666666666666666666666665555544333322233455667666543
No 271
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=23.99 E-value=69 Score=33.50 Aligned_cols=47 Identities=11% Similarity=0.113 Sum_probs=28.0
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCCh
Q 003290 298 IKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRV 344 (833)
Q Consensus 298 itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sri 344 (833)
+-++.-+.+-..++......|+.++++..-....--.|+++||.++.
T Consensus 173 ~g~~T~~ai~sG~~~g~~~~i~~~i~~~~~~~~~~~~vi~TGG~a~~ 219 (243)
T TIGR00671 173 LGKSTREAVQSGAVYGVLGLIQGLLKDWKKYFKRKFAVVITGGDGKY 219 (243)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCchHh
Confidence 33455566666666666666666665532111112369999999877
No 272
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=23.91 E-value=1.3e+03 Score=27.50 Aligned_cols=41 Identities=12% Similarity=0.145 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhh--hhccCCHHHHHHHHHHHHHHHHHhhh
Q 003290 611 VEAYVYDMRNKLCDK--YQDFVTDSERELFTSKLQETEDWLYE 651 (833)
Q Consensus 611 LEs~iy~~r~~L~~~--~~~~~~~~er~~i~~~l~e~~~WL~~ 651 (833)
|+..-+-+|...... |...--+.+-+.|.+.+.++..-|..
T Consensus 232 l~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~ 274 (569)
T PRK04778 232 LQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEE 274 (569)
T ss_pred HHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence 333334444444432 23333466667777777776666653
No 273
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=23.84 E-value=73 Score=32.31 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=16.7
Q ss_pred EEEEEcCccceEEEEEECCc
Q 003290 3 VVGFDLGNESCIVAVARQRG 22 (833)
Q Consensus 3 viGID~GTt~s~va~~~~~~ 22 (833)
++-||+|+|+++++++.++.
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~ 20 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDK 20 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTE
T ss_pred CEEEEECCCeEEEEEEECCE
Confidence 57899999999999998764
No 274
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=23.75 E-value=88 Score=35.25 Aligned_cols=30 Identities=27% Similarity=0.520 Sum_probs=24.4
Q ss_pred CCceEEEEEeCCceEEEEEEEEeC-CeEEEE
Q 003290 192 DQLNVAFVDIGHASLQVCIAGFKK-GQLKIL 221 (833)
Q Consensus 192 ~~~~vlv~D~Gggt~dvsvv~~~~-~~~~vl 221 (833)
..+.+|++|+||..+-+++|++.+ |.+.+.
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~~ 103 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFDIE 103 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCcccc
Confidence 367899999999999999999984 455443
No 275
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=23.74 E-value=37 Score=32.62 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=13.7
Q ss_pred EEEEEcCccceEEEEEE
Q 003290 3 VVGFDLGNESCIVAVAR 19 (833)
Q Consensus 3 viGID~GTt~s~va~~~ 19 (833)
|+|||-|++++..|++.
T Consensus 1 ILGIDPgl~~tG~avi~ 17 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIE 17 (149)
T ss_dssp EEEEE--SSEEEEEEEE
T ss_pred CEEECCCCCCeeEEEEE
Confidence 79999999999999975
No 276
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=23.62 E-value=1.5e+02 Score=29.23 Aligned_cols=56 Identities=21% Similarity=0.362 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhhhcCCC-CCHHHHHHHHHHHHhccchHH
Q 003290 613 AYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGED-ETKGVYVAKLEELKKQGDPIE 676 (833)
Q Consensus 613 s~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~-a~~~~~~~kl~~L~~~~~pi~ 676 (833)
.|+-+.|..|. .++++||+++ ++.+++++++.+++ .+-++..+.|..-+.++..+.
T Consensus 5 efL~~L~~~L~-----~lp~~e~~e~---l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~ 61 (181)
T PF08006_consen 5 EFLNELEKYLK-----KLPEEEREEI---LEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREIL 61 (181)
T ss_pred HHHHHHHHHHH-----cCCHHHHHHH---HHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHH
Confidence 45555555554 4677777665 56667777764432 355566555555555554444
No 277
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=23.61 E-value=73 Score=35.58 Aligned_cols=47 Identities=21% Similarity=0.236 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhC
Q 003290 308 APILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFG 356 (833)
Q Consensus 308 ~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg 356 (833)
+..+..+...|+++|+++|++..||++|++.+++.++-- ..+++.||
T Consensus 267 ~~~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~~~~~~d--~~~~~llg 313 (372)
T PRK07515 267 KEVCPMVAEHIVEHLAENGLTPADVKRFWLHQANINMNQ--LIGKKVLG 313 (372)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHHHH--HHHHHhcc
Confidence 455666778899999999999999999999999987542 22344465
No 278
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=23.54 E-value=95 Score=35.52 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=25.4
Q ss_pred cEEeechhHHH-----HHHHhhhcCCCCCC-----CCceEEEEEeCCceEEEEEEEE
Q 003290 167 PLRLFHETTAT-----ALAYGIYKTDLPEN-----DQLNVAFVDIGHASLQVCIAGF 213 (833)
Q Consensus 167 ~~~li~EptAa-----Al~y~~~~~~~~~~-----~~~~vlv~D~Gggt~dvsvv~~ 213 (833)
-+++|+-..=+ +++|.+.+- ... ....+-++||||++++++..--
T Consensus 129 ~v~visG~eEg~y~WvtvNyl~g~l--~~~~~~~~~~~t~g~lDlGGaStQIaf~~~ 183 (434)
T PF01150_consen 129 WVRVISGEEEGIYGWVTVNYLLGRL--DSSGASKSPSNTVGALDLGGASTQIAFEPS 183 (434)
T ss_dssp TCEE--HHHHHHHHHHHHHHHTTTS--SSSTEEEEESS-EEEEEE-SSEEEEEEEET
T ss_pred ceEecCHHHhhHhHHHHHHHHhCcc--ccccccCCCCceEEEEecCCcceeeeeccC
Confidence 35677655443 445554332 211 2478999999999999996544
No 279
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=23.38 E-value=1.1e+03 Score=30.59 Aligned_cols=46 Identities=11% Similarity=0.105 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003290 578 GMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYVYDMRNKLC 623 (833)
Q Consensus 578 ~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~L~ 623 (833)
.+++.++-.+.+........+.......+-...++..++.++..|.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~nL~r~~d~l~el~~ql~ 196 (1179)
T TIGR02168 151 EAKPEERRAIFEEAAGISKYKERRKETERKLERTRENLDRLEDILN 196 (1179)
T ss_pred cCCHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666665555555555555555555556666655553
No 280
>PLN02192 3-ketoacyl-CoA synthase
Probab=23.33 E-value=2e+02 Score=33.69 Aligned_cols=55 Identities=13% Similarity=0.200 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCC-CChHHHHHHHHHHhCCC
Q 003290 304 EQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSS-SRVPAIIKILTEFFGKE 358 (833)
Q Consensus 304 e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-sriP~v~~~l~~~fg~~ 358 (833)
++..++...-+...++++|+++|++++||+.|++.... ...|.+-.+|.+.+|.+
T Consensus 170 ~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lGlr 225 (511)
T PLN02192 170 AEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLR 225 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhCCC
Confidence 33344444445667788999999999999988765322 35899999999999854
No 281
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=22.86 E-value=1.5e+03 Score=27.90 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=21.0
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHhhcCCCC
Q 003290 676 EERYKEFTDRSSVIDQLAYCINSYREAALSSDPK 709 (833)
Q Consensus 676 ~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~ 709 (833)
..-.+.|..||+-..-+..+|....---...++.
T Consensus 412 llirnDy~~rpqYykLIEecISqIvlHr~~~DPd 445 (1102)
T KOG1924|consen 412 LLIRNDYYIRPQYYKLIEECISQIVLHRTGMDPD 445 (1102)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 3444778888888877777776654322334443
No 282
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=22.71 E-value=1.3e+03 Score=27.27 Aligned_cols=21 Identities=0% Similarity=0.031 Sum_probs=13.8
Q ss_pred hcchHHHHHHHHHHHHHHHHh
Q 003290 683 TDRSSVIDQLAYCINSYREAA 703 (833)
Q Consensus 683 ~~rp~a~~~l~~~l~~~~~~~ 703 (833)
..=|..++.++..|.......
T Consensus 297 ~~dp~~L~ele~RL~~l~~Lk 317 (563)
T TIGR00634 297 EFDPERLNEIEERLAQIKRLK 317 (563)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 344777777777777665544
No 283
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=22.46 E-value=3.3e+02 Score=29.37 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=35.6
Q ss_pred CCceEEEEEeCCceEEEEEEEEeCCeEEEEEeeCCCCcccHHHHHHHHHHHHH
Q 003290 192 DQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAA 244 (833)
Q Consensus 192 ~~~~vlv~D~Gggt~dvsvv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~ 244 (833)
...+++-+|+|+.++.++++...+..+..........-....+-..|.+.+.+
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~~~~~~~~~~i~~~i~~ 56 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTPDPEEAILEAILALVAE 56 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCCCCchhHHHHHHHHHHHH
Confidence 35789999999999999999888776544444433333334555555555443
No 284
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=22.05 E-value=1.8e+02 Score=31.58 Aligned_cols=47 Identities=21% Similarity=0.267 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHHHhCCC
Q 003290 309 PILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKE 358 (833)
Q Consensus 309 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sriP~v~~~l~~~fg~~ 358 (833)
..+..+...++++|++++++.++|+.+++..++ +.+.+.+.+.+|.+
T Consensus 222 ~~~~~~~~~i~~~L~~~g~~~~did~~~~h~~~---~~~~~~~~~~lg~~ 268 (325)
T PRK12879 222 WAVRTMPKGARQVLEKAGLTKDDIDWVIPHQAN---LRIIESLCEKLGIP 268 (325)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCC---HHHHHHHHHHcCCC
Confidence 345667788899999999999999999999887 44456788888753
No 285
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=22.04 E-value=1.2e+02 Score=28.54 Aligned_cols=47 Identities=19% Similarity=0.400 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCHHHHHHHH----HHHHHHHHHhhhcCC
Q 003290 608 KNAVEAYVYDMRNKLCDKYQDFVTDSERELFT----SKLQETEDWLYEDGE 654 (833)
Q Consensus 608 kN~LEs~iy~~r~~L~~~~~~~~~~~er~~i~----~~l~e~~~WL~~~g~ 654 (833)
.+.||.+++++.+--...|..+++.+|-.++- +.++.+..||...|-
T Consensus 26 ~~~L~~~l~~vsdP~s~~Ygk~Lt~~e~~~~~~p~~~~v~~V~~wL~~~G~ 76 (143)
T PF09286_consen 26 LDALEQYLAEVSDPGSPNYGKYLTPEEFAALFAPSPEDVAAVKSWLKSHGL 76 (143)
T ss_dssp HHHHHHHHHHHHTTTSTTTT----HHHHHHHHS--HHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHhCcCCCCcccccCCCHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 46788999888776666788999998887764 468899999998763
No 286
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=21.94 E-value=1.8e+02 Score=30.64 Aligned_cols=41 Identities=15% Similarity=0.236 Sum_probs=32.5
Q ss_pred CccEEEEeCCCCChHHHHHHHHHHhCCCCCCCCCchhHHHhHHH
Q 003290 331 DVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCA 374 (833)
Q Consensus 331 ~i~~ViLvGG~sriP~v~~~l~~~fg~~~~~~~npdeava~Gaa 374 (833)
.++.|+| |+|-.|++.+.+++.||.++ .-+||.+++|+=+.
T Consensus 172 ~~d~lIL--GCTh~P~l~~~i~~~~~~~v-~~IDp~~~la~~~~ 212 (251)
T TIGR00067 172 LPDTVVL--GCTHFPLLKEEIEQYLPEHV-RLVDSGVHTARRTA 212 (251)
T ss_pred CCCEEEE--CcCChHHHHHHHHHHcCCCc-EEECCHHHHHHHHH
Confidence 4666644 99999999999999998654 56789888887664
No 287
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=21.80 E-value=8.8e+02 Score=25.06 Aligned_cols=88 Identities=16% Similarity=0.192 Sum_probs=60.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhccchHHHHHHhhhcchHHHHHHHHHHHHHHHHhhcCCC
Q 003290 629 FVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEFTDRSSVIDQLAYCINSYREAALSSDP 708 (833)
Q Consensus 629 ~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~ 708 (833)
.....+...+...+..+.+||.+ ...+..+..++++.. ..-|..+..++..|...........+
T Consensus 10 ~~~~~~~~~~i~~l~~al~~L~~------~~~~~~~~~~~~~~i----------~~aP~~~~~l~~~l~~l~~~~~~~~~ 73 (240)
T PF12795_consen 10 KLDEPEQKALIQDLQQALSFLDE------IKKQKKRAAEYQKQI----------DQAPKEIRELQKELEALKSQDAPSKE 73 (240)
T ss_pred CCCChhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH----------HHhHHHHHHHHHHHHhhhcccccccc
Confidence 44556788999999999999986 456777777777654 45688888888888887554223455
Q ss_pred CCCCCCHHHHHHHHHH-HHHHHHHH
Q 003290 709 KFDHIDIAEKQKVLNE-CADAEAWV 732 (833)
Q Consensus 709 ~~~~~~~~e~~~v~~~-~~~~~~Wl 732 (833)
.|..++.+++..-+.. ......|=
T Consensus 74 ~~~~~s~~eLeq~l~~~~~~L~~~q 98 (240)
T PF12795_consen 74 ILANLSLEELEQRLSQEQAQLQELQ 98 (240)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHH
Confidence 6777887777654443 33344443
No 288
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=21.73 E-value=1.1e+03 Score=28.66 Aligned_cols=43 Identities=14% Similarity=0.178 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhHhhhcCCCC
Q 003290 718 KQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCRPIMTKPKP 775 (833)
Q Consensus 718 ~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~k~kp 775 (833)
.....+.++.+..||.+..... ...+...|++.++.++++.-.
T Consensus 478 ~~~~~~~~~~~~~~l~~~~~~l---------------~~~~~~~le~~~~~~f~~l~~ 520 (650)
T TIGR03185 478 LERAITIADKAKKTLKEFREKL---------------LERKLQQLEEEITKSFKKLMR 520 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHhc
Confidence 3445555666677776544432 345677788888888877776
No 289
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=21.27 E-value=2.2e+02 Score=30.56 Aligned_cols=45 Identities=16% Similarity=0.330 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEE-EeCCCCChHHHHHHHHHHhCC
Q 003290 313 RVKRPLEKALAETGLSVEDVHMVE-VVGSSSRVPAIIKILTEFFGK 357 (833)
Q Consensus 313 ~i~~~i~~~l~~~~~~~~~i~~Vi-LvGG~sriP~v~~~l~~~fg~ 357 (833)
-+...|+++|+++|+++.+|+.++ -+..++-.|.+-.+|.+.||.
T Consensus 86 v~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~m 131 (290)
T PF08392_consen 86 VIFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYGM 131 (290)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhCC
Confidence 345677888999999999999664 456678899999999999984
No 290
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=21.12 E-value=1.4e+03 Score=26.88 Aligned_cols=61 Identities=15% Similarity=0.239 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhccchHHHHHHhhhcchHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHH
Q 003290 660 VYVAKLEELKKQGDPIEERYKEFTDRSSVIDQLAYCINSYREAALSSDPKFDHIDIAEKQK 720 (833)
Q Consensus 660 ~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~ 720 (833)
.+.++.+.|.+.-.-+..|..+...+-+.++.+...+..........-+..+.+|.++-+.
T Consensus 91 ~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~eak~ 151 (514)
T TIGR03319 91 TLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKE 151 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 3555555555555555555555556656555555554443332222223445566665443
No 291
>PF15469 Sec5: Exocyst complex component Sec5
Probab=21.11 E-value=5.8e+02 Score=25.02 Aligned_cols=47 Identities=9% Similarity=0.046 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHhccchHHHHHHhhhcchHHHHHHHHHHHHHHHHh
Q 003290 657 TKGVYVAKLEELKKQGDPIEERYKEFTDRSSVIDQLAYCINSYREAA 703 (833)
Q Consensus 657 ~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~ 703 (833)
..+.+...+.++.....-+..-+-+...|-..+......|...+.+.
T Consensus 41 ~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~r~~flF 87 (182)
T PF15469_consen 41 GTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQRNRFLF 87 (182)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666665555555555555555555555555555443
No 292
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=20.93 E-value=2.5e+02 Score=22.96 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=38.0
Q ss_pred HHHHHHhhCCCCCCHHHHHhhccCCceeeeCCCCceEEEEEEcCceeeeCHHHHHHHHHH
Q 003290 64 ISQIKRLIGRQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLS 123 (833)
Q Consensus 64 ~~~~k~llG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~ 123 (833)
+..+++++|..++...+...++.+.|.+....++.+.+.+...-. -.....+|+..+++
T Consensus 8 ~~~i~~~lG~~i~~~~i~~~L~~lg~~~~~~~~~~~~v~vP~~R~-Di~~~~DliEEiaR 66 (70)
T PF03484_consen 8 LDKINKLLGIDISPEEIIKILKRLGFKVEKIDGDTLEVTVPSYRF-DIEHEEDLIEEIAR 66 (70)
T ss_dssp HHHHHHHHTS---HHHHHHHHHHTT-EEEE-CTTEEEEEEETTST-T-SSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHCCCEEEECCCCEEEEEcCCCcC-CcCcccHHHHHHHH
Confidence 556799999999888898999999999988656666676654331 23566666665543
No 293
>PRK06840 hypothetical protein; Validated
Probab=20.84 E-value=2.2e+02 Score=31.22 Aligned_cols=48 Identities=17% Similarity=0.201 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccEEEEeCCCC---ChHHHHHHHHHHhCCC
Q 003290 311 LERVKRPLEKALAETGLSVEDVHMVEVVGSSS---RVPAIIKILTEFFGKE 358 (833)
Q Consensus 311 ~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s---riP~v~~~l~~~fg~~ 358 (833)
.+-....++++|+++++++.+|+.|+.++-.+ ..|..-..|...+|.+
T Consensus 54 ~~la~~Aa~~aL~~ag~~~~dId~li~~~~~~~~~~~p~~a~~l~~~lGl~ 104 (339)
T PRK06840 54 SDMAIAAAKPALKQAGVDPAAIDVVIYIGSEHKDYPVWSSAPKIQHEIGAK 104 (339)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEeccCCCCCCCCchHHHHHHHhCCC
Confidence 34445677889999999999999998765322 3676677788888843
No 294
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=20.77 E-value=83 Score=36.49 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=16.1
Q ss_pred EEEEEcCccceEEEEEE
Q 003290 3 VVGFDLGNESCIVAVAR 19 (833)
Q Consensus 3 viGID~GTt~s~va~~~ 19 (833)
++|||.|||.+++++++
T Consensus 8 ~~gIDvGTtSaR~~v~~ 24 (516)
T KOG2517|consen 8 VLGIDVGTTSARALVFN 24 (516)
T ss_pred EEEEEcCCCceEEEEEe
Confidence 79999999999999987
No 295
>PRK03918 chromosome segregation protein; Provisional
Probab=20.71 E-value=8.7e+02 Score=30.48 Aligned_cols=147 Identities=13% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhhhcCCCCCHHH
Q 003290 581 PVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGV 660 (833)
Q Consensus 581 ~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~ 660 (833)
...+........++..............+.|+.-+-.++..+. .+....++++.+.+...+..++..+.+ -....+.
T Consensus 608 ~~~~~~l~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~~~-~l~~~~~~~~~~~l~~~~~~l~~~l~~--l~~~~~~ 684 (880)
T PRK03918 608 KDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELE-ELEKKYSEEEYEELREEYLELSRELAG--LRAELEE 684 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q ss_pred HHHHHHHHHhccchHHHHHHhhhcchHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHH
Q 003290 661 YVAKLEELKKQGDPIEERYKEFTDRSSVIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEA 730 (833)
Q Consensus 661 ~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~ 730 (833)
+..++..|+.-..-+..........-..+..+...+..+.........-.+.+...-+..|...++....
T Consensus 685 l~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~l~~lr~~~~~~~~~l~~~~~~~l~~~~~~if~ 754 (880)
T PRK03918 685 LEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERALSKVGEIASEIFE 754 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 296
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=20.70 E-value=4.1e+02 Score=27.27 Aligned_cols=44 Identities=23% Similarity=0.173 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEEeCCCCC--hHHHHHHHHHHhCC
Q 003290 314 VKRPLEKALAETGLSVEDVHMVEVVGSSSR--VPAIIKILTEFFGK 357 (833)
Q Consensus 314 i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr--iP~v~~~l~~~fg~ 357 (833)
....++++|++++++.++|+.|++.....- .|.+...|...+|.
T Consensus 11 ~~~A~~~al~~ag~~~~~i~~li~~~~~~~~~~~~~a~~i~~~lg~ 56 (254)
T cd00327 11 GFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGI 56 (254)
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEEECCCCccccHHHHHHHHHhCC
Confidence 456678889999999999999987765443 68888889999985
No 297
>COG4052 Uncharacterized protein related to methyl coenzyme M reductase subunit C [General function prediction only]
Probab=20.54 E-value=2.3e+02 Score=29.08 Aligned_cols=54 Identities=11% Similarity=0.214 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhHh
Q 003290 715 IAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCRP 768 (833)
Q Consensus 715 ~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~ 768 (833)
-+|+..+....+-+..-+++...++.+-|+-..|++-.++|+.+..++++...+
T Consensus 195 geeI~aL~klvevvs~ii~errrela~DPp~Vpp~~Vk~eIe~qv~~i~~v~SP 248 (310)
T COG4052 195 GEEIRALDKLVEVVSKIISERRRELAKDPPAVPPAVVKDEIENQVPEIQRVLSP 248 (310)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHhhhhHHHhhcCC
Confidence 466777777777777888888889999999999999999999999998887653
No 298
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=20.13 E-value=51 Score=37.94 Aligned_cols=17 Identities=41% Similarity=0.432 Sum_probs=15.0
Q ss_pred EEEEcCccceEEEEEEC
Q 003290 4 VGFDLGNESCIVAVARQ 20 (833)
Q Consensus 4 iGID~GTt~s~va~~~~ 20 (833)
+|||+|||+++++++..
T Consensus 1 ~aiD~Gtt~~k~~l~~~ 17 (454)
T TIGR02627 1 VAVDLGASSGRVMLASY 17 (454)
T ss_pred CcEeccCCchheEEEEE
Confidence 58999999999998863
No 299
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=20.10 E-value=64 Score=37.37 Aligned_cols=18 Identities=22% Similarity=0.508 Sum_probs=15.7
Q ss_pred EEEEcCccceEEEEEECC
Q 003290 4 VGFDLGNESCIVAVARQR 21 (833)
Q Consensus 4 iGID~GTt~s~va~~~~~ 21 (833)
||||+||+++++++++..
T Consensus 1 lgIDiGtt~ik~~l~d~~ 18 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQ 18 (481)
T ss_pred CceeecCcceEEEEECCC
Confidence 699999999999998643
Done!