BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003291
(833 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q76PD2|YJ01_SCHPO LIM domain and RING finger protein C1223.01 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC1223.01 PE=1 SV=2
Length = 732
Score = 173 bits (438), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 149/298 (50%), Gaps = 29/298 (9%)
Query: 5 CAVCADTLEWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTENNVVFVTKALGDYTRM 64
C +CA+ + + C HR +C C RLR + + + C CKTE + V +TK D+
Sbjct: 81 CFICAEGITYSCVLPCNHR-MCHVCALRLRALYKTKECTFCKTEWDTVLITK---DHEID 136
Query: 65 ISDFSVLPTELREGRVGSYWYHEDTQAFFDDVDHYKMIKAMCRLSCSVCDNMEGPNDGSK 124
I D + ++ ++G + E Q + + + + C ++C
Sbjct: 137 IHDVDLAKLPFQDEKLGIVYSDEHAQEESNLLLQFNCPEDACDITC-------------- 182
Query: 125 RRARFRNIEQLKGHLFHRHKLLMCSLCLEGRKVFICEQKLYTRAQLNQHINSGDSVVDGT 184
+ LK H +H C LC++ +KVF E L+++ L +H GD G+
Sbjct: 183 -----KGWFDLKLHAKVKHHKFFCDLCVKNKKVFTHEHTLFSKKGLTKHNEVGDQ---GS 234
Query: 185 ESERGGFMGHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQHPGQ--YEYYKNYDDLE 242
+ E GF GHP CEFC T FY D+EL+ H +H C+IC Q G+ ++Y+KNYD LE
Sbjct: 235 DLEITGFKGHPKCEFCNTHFYDDDELFKHCREKHERCYICD-QVAGRPTHQYFKNYDSLE 293
Query: 243 IHFRRDHFLCEDEACLAKKFVVFQSEAEMKRHNAIEHGGRMSRAKRNAALQIPICFRY 300
HF +DH++C + CL +KFVVF +E ++K H EH ++ + A +I F Y
Sbjct: 294 RHFEKDHYICRERECLERKFVVFGTEIDLKAHQLDEHPHNFTQRELREARRIIPQFSY 351
Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 549 PSISQPAPSVENIQAANRSLVERMRAAFEYDEDKYTAFKDITAQYRQGLIDTRKYLEYVK 608
P +P + QA ++ +++RM+ YD+ K FK + +R ++ R+ + +
Sbjct: 483 PPKGTKSPMASSEQAQHQQVIDRMQKLTNYDDHKINDFKFAVSSFRGNVMPAREAVARIT 542
Query: 609 QY------GLSHLVLELARLCPDALKQKELIETY 636
+ LS + ++A L + K +EL+E +
Sbjct: 543 KLVAKPHEQLSGVFNQIANLLENKEKSRELLEAW 576
>sp|Q05580|YD266_YEAST LIM domain and RING finger protein YDR266C OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YDR266C PE=1
SV=1
Length = 639
Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 138/286 (48%), Gaps = 39/286 (13%)
Query: 2 DDSCAVCADTLEWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTENN-VVFVTKALGD 60
++ C +CA L +V+ C H+ C C R R + + C IC+TEN V+F + GD
Sbjct: 61 NELCVICARKLTYVSLTPCHHK-TCHICGFRQRALYNKKSCLICRTENEEVMFTDRIDGD 119
Query: 61 YTRMISDFSVLPTELREGRVGSYWYHEDTQAFFDDVDHYKMIKAMCRLSC--SVCDNMEG 118
ISD + + G + E+ + ++K C LS VCD
Sbjct: 120 ----ISDKYNFCE--KNEKYGINFTSEEVA-----TETLNLLKFFCPLSKDEQVCD---- 164
Query: 119 PNDGSKRRARFRNIEQLKGHLFHRHKLLMCSLCLEGRKVFICEQKLYTRAQLNQHINSGD 178
F + ++ HL H ++C +C + F CE +++T+ QL H G+
Sbjct: 165 ----------FGSFKKYNEHLKSEHNRMICLICATHKHAFPCELEIFTQNQLRNHQTKGN 214
Query: 179 SVVDGTESERGGFMGHPMCEFCRTP-FYGDNELYTHMSTEHYTCHICQRQHPGQYEYYKN 237
S GF GHPMC FC FY D+ELY HM +H CHIC + +P +Y+K+
Sbjct: 215 S---------EGFKGHPMCAFCSGKRFYSDDELYIHMRNQHEKCHICDKMNPASPQYFKD 265
Query: 238 YDDLEIHFRRDHFLCEDEACLAKKFVVFQSEAEMKRHNAIEHGGRM 283
Y+ L HF+ H++C + CL KFVVF+ E E++ H EHG +
Sbjct: 266 YNQLFDHFKHSHYVCTVQTCLDNKFVVFKDELELQAHILQEHGNIL 311
>sp|Q80YR4|ZN598_MOUSE Zinc finger protein 598 OS=Mus musculus GN=Znf598 PE=2 SV=1
Length = 908
Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 143/306 (46%), Gaps = 37/306 (12%)
Query: 4 SCAVCADTLEWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTE-NNVVFVTKALGDYT 62
SC +C LE A G C H VC C ++R +C+ R C +C+ E VVF K
Sbjct: 26 SCVLCCGDLEATALGRCDH-PVCYRCSTKMRVLCEQRYCAVCREELRQVVFGKK------ 78
Query: 63 RMISDFSVLPTELREGRVGSYWYHEDTQAFFDDVDHYKMIKAMCRLSCSVCDNMEGPNDG 122
+ F+++P + + + +F D + + + + + C C ++
Sbjct: 79 --LPAFALIP-------IHQLQHEKKYDIYFADGKVFALYRQLLQHECPRCPHL------ 123
Query: 123 SKRRARFRNIEQLKGHLFHRHKLLMCSLCLEGRKVFICEQKLYTRAQLNQHINSGDSVVD 182
F L+ H+ +H+L C LCL+ K+F E+K Y+R L +H GD D
Sbjct: 124 ----PPFSLFGDLEQHMRKQHELFCCKLCLKHLKIFTYERKWYSRKDLARHRMQGDP--D 177
Query: 183 GTESERGGFMGHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQHPGQYEYYKNYDDLE 242
T S RG HP+C+FC + ++EL H+ +HY CH C G +YY +Y L
Sbjct: 178 DT-SHRG----HPLCKFCDERYLDNDELLKHLRRDHYFCHFCDSD--GAQDYYSDYAYLR 230
Query: 243 IHFRRDHFLCEDEACLAKKFV-VFQSEAEMKRHNAIEHGGRMSRAKRNAALQIPICFRYR 301
HFR HFLCE+ C ++F F++E ++K H H + A++N + + F R
Sbjct: 231 EHFREKHFLCEEGRCSTEQFTHAFRTEIDLKAHKTACHSRSRAEARQNRQIDLQFSFAPR 290
Query: 302 RNNEQE 307
+ E
Sbjct: 291 HSRRSE 296
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 559 ENIQAANRSLVERMRAAFEYDEDKYTAFKDITAQYRQGLIDTRKYLEYVKQY---GLSHL 615
EN + N L++ ++ + DE ++ FK + ++RQG+I +Y + + +
Sbjct: 755 ENFRERNLQLIQSIKDFLQSDEACFSKFKSHSGEFRQGMISAAQYYKSCRDLLGESFQKI 814
Query: 616 VLELARLCPDALKQKELIETYN 637
EL L PD KQ+EL+ +
Sbjct: 815 FSELLALLPDTAKQQELLSAHT 836
>sp|Q86UK7|ZN598_HUMAN Zinc finger protein 598 OS=Homo sapiens GN=ZNF598 PE=1 SV=1
Length = 904
Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/306 (30%), Positives = 142/306 (46%), Gaps = 39/306 (12%)
Query: 4 SCAVCADTLEWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTE-NNVVFVTKALGDYT 62
SC +C LE A G C H VC C ++R +C+ R C +C+ E VVF K
Sbjct: 28 SCVLCCGDLEATALGRCDH-PVCYRCSTKMRVLCEQRYCAVCREELRQVVFGKK------ 80
Query: 63 RMISDFSVLPTELREGRVGSYWYHEDTQAFFDDVDHYKMIKAMCRLSCSVCDNMEGPNDG 122
+ F+ +P + + + +F D Y + + + + C C +
Sbjct: 81 --LPAFATIP-------IHQLQHEKKYDIYFADGKVYALYRQLLQHECPRCPEL------ 125
Query: 123 SKRRARFRNIEQLKGHLFHRHKLLMCSLCLEGRKVFICEQKLYTRAQLNQHINSGDSVVD 182
F L+ H+ +H+L C LCL+ ++F E+K Y+R L +H GD D
Sbjct: 126 ----PPFSLFGDLEQHMRRQHELFCCRLCLQHLQIFTYERKWYSRKDLARHRMQGDP--D 179
Query: 183 GTESERGGFMGHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQHPGQYEYYKNYDDLE 242
T S RG HP+C+FC + ++EL H+ +HY CH C G +YY +Y L
Sbjct: 180 DT-SHRG----HPLCKFCDERYLDNDELLKHLRRDHYFCHFCDSD--GAQDYYSDYAYLR 232
Query: 243 IHFRRDHFLCEDEACLAKKFV-VFQSEAEMKRHNAIEHGGRMSRAKRN--AALQIPICFR 299
HFR HFLCE+ C ++F F++E ++K H H + A++N LQ R
Sbjct: 233 EHFREKHFLCEEGRCSTEQFTHAFRTEIDLKAHRTACHSRSRAEARQNRHIDLQFSYAPR 292
Query: 300 YRRNNE 305
+ R NE
Sbjct: 293 HSRRNE 298
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 519 SASAPNLANGSVEPSVSDFPPVSAMRTDKMPSISQPAPSV----ENIQAANRSLVERMRA 574
S P + P + P + T K P + PAP EN + N L++ +R
Sbjct: 708 SKPPPGFSGLLPSPHPACVPSPATTTTTKAPRLL-PAPRAYLVPENFRERNLQLIQSIRD 766
Query: 575 AFEYDEDKYTAFKDITAQYRQGLIDTRKYLEYVKQY---GLSHLVLELARLCPDALKQKE 631
+ DE +++ FK + ++RQGLI +Y + + + EL L PD KQ+E
Sbjct: 767 FLQSDEARFSEFKSHSGEFRQGLISAAQYYKSCRDLLGENFQKVFNELLVLLPDTAKQQE 826
Query: 632 LIETYN 637
L+ +
Sbjct: 827 LLSAHT 832
>sp|Q6PFK1|ZN598_DANRE Zinc finger protein 598 OS=Danio rerio GN=znf598 PE=1 SV=2
Length = 953
Score = 147 bits (371), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 143/310 (46%), Gaps = 44/310 (14%)
Query: 2 DDSCAVCADTLEWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTE-NNVVFVTKALGD 60
+ +C +C ++ A G C H VC C ++R +C+ + C +C+ + + VVF+ K
Sbjct: 54 ESTCVLCCQDIDLFAVGKCDH-PVCYRCSTKMRVLCEQKYCAVCREQLDKVVFLRKPEA- 111
Query: 61 YTRMISDFSVLPTELREGRVGSYWYHEDTQAFFDDVDHYKMIKAMCRLSCSVCDNMEGPN 120
F+ L + Y + +F D + + + C C +
Sbjct: 112 -------FATL-------NIHHYQCEKKYDIYFGDGKVHAQFRKILLNECPHCPEPKV-- 155
Query: 121 DGSKRRARFRNIEQLKGHLFHRHKLLMCSLCLEGRKVFICEQKLYTRAQLNQHINSGDSV 180
F E+L+ H+ +H+L C LCL+ K+F E+K Y+R L +H GD
Sbjct: 156 --------FSKFEELEQHMRKQHELFCCKLCLKHLKIFSYERKWYSRKDLARHRMQGDP- 206
Query: 181 VDGTESERGGFMGHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQHPGQYEYYKNYDD 240
D T GHP+C+FC + ++EL H+ +HY CH C G EYY +Y
Sbjct: 207 -DDT-----SHRGHPLCKFCDDRYLDNDELLKHLRRDHYFCHFCDAD--GAQEYYSDYQY 258
Query: 241 LEIHFRRDHFLCEDEACLAKKFV-VFQSEAEMKRHNAIEHGGRMSRAKRNAALQIPICFR 299
L HFR H+LCE+ C ++F F++E + K H A H + A++N QI I F
Sbjct: 259 LSEHFRESHYLCEEGRCSTEQFTHAFRTEIDYKAHKAAAHSKNRAEARQNR--QIDIQFN 316
Query: 300 Y-----RRNN 304
Y RRN+
Sbjct: 317 YAPRQQRRND 326
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 57/114 (50%), Gaps = 9/114 (7%)
Query: 532 PSVSDFPPVSAMRTDKMPSISQPAPSV------ENIQAANRSLVERMRAAFEYDEDKYTA 585
P + P S + + ++++P P++ ++ Q N L++ ++ + DE K+
Sbjct: 764 PGFTGVPLNSNVEDSSVSAVNRPTPAIGSYLIPDHFQQRNMDLIQSIKNFLQNDETKFNE 823
Query: 586 FKDITAQYRQGLIDTRKYLEYVKQY---GLSHLVLELARLCPDALKQKELIETY 636
FK+ + Q+RQG + +Y + ++ + + EL L PD KQ+EL+ +
Sbjct: 824 FKNYSGQFRQGALPAVQYYKSCQELLGENFNRVFNELLVLLPDTRKQQELLTAH 877
>sp|Q7SY21|TADA3_DANRE Transcriptional adapter 3 OS=Danio rerio GN=tada3 PE=2 SV=1
Length = 429
Score = 35.8 bits (81), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 358 DAEDIDTLIQPFESLATTDSE------LASRYLQALGQNSRTAPLEESSFPPLPMASSSS 411
DA+D+D L++ ES + L+ R LQAL + + +P+E+S P +P +
Sbjct: 231 DAKDVDALLKKSESQHEPPEDGCPFGPLSQRLLQALVEENIISPMEDSPIPDIPGKDDGA 290
Query: 412 QQNPRSNSEGL 422
+PRS +
Sbjct: 291 GTSPRSQGKAF 301
>sp|Q9VUX2|MIB_DROME E3 ubiquitin-protein ligase mind-bomb OS=Drosophila melanogaster
GN=mib1 PE=1 SV=3
Length = 1226
Score = 35.4 bits (80), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 10/61 (16%)
Query: 3 DSCAVCADTLEWVAYGGCGHREVCSTCVARLR--FICQDR--------RCCICKTENNVV 52
D C VC+D + CGH C TC R++ IC++ C +C V
Sbjct: 968 DECLVCSDAKRDTVFKPCGHVSCCETCAPRVKKCLICRETVSSREKIDECLVCSDRRAAV 1027
Query: 53 F 53
F
Sbjct: 1028 F 1028
Score = 33.5 bits (75), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 3 DSCAVCADTLEWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTENNVVF 53
D C VC+D V + CGH C C A + ++C +C+T+ + +
Sbjct: 1015 DECLVCSDRRAAVFFRPCGHMVACEHCSALM------KKCVLCRTQIDEIL 1059
>sp|Q804S5|MIB1_DANRE E3 ubiquitin-protein ligase mib1 OS=Danio rerio GN=mib1 PE=1 SV=1
Length = 1030
Score = 35.0 bits (79), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 3 DSCAVCADTLEWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTE 48
+ C VC+D +G CGH CS C R+ ++C ICK +
Sbjct: 815 EECMVCSDMKRDTLFGPCGHIATCSLCSPRV------KKCLICKEQ 854
>sp|Q80SY4|MIB1_MOUSE E3 ubiquitin-protein ligase MIB1 OS=Mus musculus GN=Mib1 PE=1 SV=1
Length = 1006
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 3 DSCAVCADTLEWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTE 48
+ C VC+D +G CGH CS C R+ ++C ICK +
Sbjct: 817 EECMVCSDMKRDTLFGPCGHIATCSLCSPRV------KKCLICKEQ 856
>sp|Q86YT6|MIB1_HUMAN E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens GN=MIB1 PE=1 SV=1
Length = 1006
Score = 35.0 bits (79), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 3 DSCAVCADTLEWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTE 48
+ C VC+D +G CGH CS C R+ ++C ICK +
Sbjct: 817 EECMVCSDMKRDTLFGPCGHIATCSLCSPRV------KKCLICKEQ 856
>sp|Q24478|CP190_DROME Centrosome-associated zinc finger protein CP190 OS=Drosophila
melanogaster GN=Cp190 PE=1 SV=2
Length = 1096
Score = 34.3 bits (77), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 33/138 (23%)
Query: 147 MCSLC-LEGRKVFICEQKLYTRAQLNQHINSGDSVVDGTESERGGFMGHPMCEFCRTPFY 205
+C C + GR + I + + R +N H + D +CE C
Sbjct: 471 LCLRCGVNGRPISIPSYRGFRRHLINTHKETIDPA---------------LCEHCGWRSV 515
Query: 206 GDNELYTHMSTEHYT---------CHICQRQHPGQYEYYKNYDDLEIHFRRDHFLCEDEA 256
+ EL+ HM EH T C +C + Y+ +LE H H +
Sbjct: 516 NNRELHFHMYMEHQTKSLLYTFAECALCNQS-------YRTKGELEAHINEVHTDDNKQQ 568
Query: 257 CLAKKFVVFQSEAEMKRH 274
C+ VF+ E ++ RH
Sbjct: 569 CIYCN-KVFEQELQLYRH 585
>sp|Q6GNY1|MIB1_XENLA E3 ubiquitin-protein ligase mib1 OS=Xenopus laevis GN=mib1 PE=2
SV=1
Length = 1011
Score = 33.5 bits (75), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 3 DSCAVCADTLEWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTE 48
+ C VC+D +G CGH CS C R+ ++C +CK +
Sbjct: 818 EECMVCSDLKRDTLFGPCGHIATCSLCSPRV------KKCLLCKEQ 857
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.129 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 314,410,120
Number of Sequences: 539616
Number of extensions: 13595105
Number of successful extensions: 44849
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 309
Number of HSP's that attempted gapping in prelim test: 42702
Number of HSP's gapped (non-prelim): 1485
length of query: 833
length of database: 191,569,459
effective HSP length: 126
effective length of query: 707
effective length of database: 123,577,843
effective search space: 87369535001
effective search space used: 87369535001
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)