Query 003291
Match_columns 833
No_of_seqs 431 out of 2174
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 20:42:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003291.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003291hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2231 Predicted E3 ubiquitin 100.0 2.6E-56 5.7E-61 512.1 15.5 650 3-777 1-669 (669)
2 COG5236 Uncharacterized conser 100.0 1.3E-46 2.8E-51 395.0 8.6 245 3-282 62-308 (493)
3 KOG2462 C2H2-type Zn-finger pr 99.6 3.6E-16 7.9E-21 163.7 6.0 125 105-277 128-265 (279)
4 KOG2462 C2H2-type Zn-finger pr 99.5 1.5E-14 3.2E-19 151.7 3.6 102 106-247 160-265 (279)
5 KOG2231 Predicted E3 ubiquitin 99.4 7.5E-14 1.6E-18 162.6 6.5 54 2-57 78-132 (669)
6 KOG3608 Zn finger proteins [Ge 99.3 9.2E-13 2E-17 141.1 2.5 131 105-281 205-347 (467)
7 KOG3576 Ovo and related transc 99.1 1.4E-11 3.1E-16 123.7 0.7 103 145-281 117-238 (267)
8 KOG3608 Zn finger proteins [Ge 99.1 4.4E-11 9.6E-16 128.3 2.4 132 106-282 236-379 (467)
9 KOG3576 Ovo and related transc 98.9 2.4E-10 5.3E-15 115.0 0.8 104 106-249 116-236 (267)
10 KOG1074 Transcriptional repres 98.9 6.2E-10 1.3E-14 130.4 2.6 51 219-282 880-934 (958)
11 KOG1074 Transcriptional repres 98.8 6.3E-10 1.4E-14 130.3 -0.1 80 193-285 604-698 (958)
12 KOG3623 Homeobox transcription 98.7 5E-09 1.1E-13 120.9 1.1 99 108-227 211-318 (1007)
13 KOG3623 Homeobox transcription 98.5 3.1E-08 6.8E-13 114.5 1.2 83 138-248 887-973 (1007)
14 PLN03086 PRLI-interacting fact 98.5 3.2E-07 6.9E-12 107.0 8.4 140 88-281 412-566 (567)
15 PLN03086 PRLI-interacting fact 98.4 1.6E-07 3.4E-12 109.5 5.0 97 108-248 454-563 (567)
16 KOG4172 Predicted E3 ubiquitin 98.4 2.8E-08 6.1E-13 80.3 -2.4 52 1-53 6-57 (62)
17 PF13920 zf-C3HC4_3: Zinc fing 98.3 6.3E-07 1.4E-11 72.3 3.3 49 2-52 2-50 (50)
18 PHA00733 hypothetical protein 98.3 6.7E-07 1.4E-11 86.4 3.9 53 193-252 72-126 (128)
19 PHA00733 hypothetical protein 98.0 3.7E-06 7.9E-11 81.3 4.3 76 193-281 39-125 (128)
20 KOG4265 Predicted E3 ubiquitin 97.8 5.8E-06 1.3E-10 90.6 1.7 47 3-51 291-337 (349)
21 COG5236 Uncharacterized conser 97.7 2E-05 4.4E-10 85.2 2.3 126 89-247 163-303 (493)
22 PHA02768 hypothetical protein; 97.4 3.9E-05 8.4E-10 63.2 0.6 37 105-153 3-39 (55)
23 PHA02768 hypothetical protein; 97.2 0.00021 4.5E-09 59.0 2.6 43 146-211 6-48 (55)
24 KOG3993 Transcription factor ( 97.0 0.00018 3.9E-09 80.1 0.5 151 105-282 265-485 (500)
25 PF12756 zf-C2H2_2: C2H2 type 96.9 0.00053 1.2E-08 61.7 2.7 74 196-282 1-77 (100)
26 PF13639 zf-RING_2: Ring finge 96.8 0.00077 1.7E-08 52.8 2.2 41 3-46 1-44 (44)
27 cd00162 RING RING-finger (Real 96.7 0.0016 3.4E-08 49.7 3.2 43 4-48 1-44 (45)
28 PHA02926 zinc finger-like prot 96.7 0.0011 2.4E-08 68.9 2.8 54 2-56 170-236 (242)
29 PF14634 zf-RING_5: zinc-RING 96.6 0.0013 2.8E-08 51.8 2.3 41 4-47 1-44 (44)
30 PF13465 zf-H2C2_2: Zinc-finge 96.5 0.00086 1.9E-08 47.0 0.6 25 169-205 1-25 (26)
31 PF00097 zf-C3HC4: Zinc finger 96.5 0.002 4.2E-08 49.5 2.6 40 5-45 1-41 (41)
32 PF13923 zf-C3HC4_2: Zinc fing 96.5 0.0016 3.4E-08 49.8 2.1 38 5-45 1-39 (39)
33 PHA00732 hypothetical protein 96.5 0.0016 3.6E-08 57.9 2.2 48 107-178 1-48 (79)
34 PF12756 zf-C2H2_2: C2H2 type 96.4 0.00088 1.9E-08 60.3 0.3 73 109-217 1-73 (100)
35 KOG3993 Transcription factor ( 96.4 0.00075 1.6E-08 75.3 -0.4 78 193-283 266-384 (500)
36 PLN03208 E3 ubiquitin-protein 96.3 0.0024 5.2E-08 65.6 2.9 46 4-50 20-79 (193)
37 PHA00732 hypothetical protein 96.2 0.0042 9E-08 55.3 3.1 43 195-247 2-46 (79)
38 KOG0823 Predicted E3 ubiquitin 96.0 0.0047 1E-07 64.7 2.9 46 4-50 49-95 (230)
39 PF05605 zf-Di19: Drought indu 95.9 0.0039 8.4E-08 51.3 1.7 23 195-218 3-25 (54)
40 KOG4692 Predicted E3 ubiquitin 95.9 0.0034 7.4E-08 68.7 1.6 51 2-55 422-472 (489)
41 KOG1785 Tyrosine kinase negati 95.6 0.0043 9.3E-08 68.9 0.7 51 4-55 371-424 (563)
42 TIGR00570 cdk7 CDK-activating 95.4 0.0091 2E-07 65.5 2.8 48 1-50 1-54 (309)
43 KOG2893 Zn finger protein [Gen 95.4 0.004 8.7E-08 65.0 -0.2 34 194-227 10-43 (341)
44 PF05605 zf-Di19: Drought indu 95.4 0.016 3.4E-07 47.7 3.3 47 218-280 2-54 (54)
45 smart00184 RING Ring finger. E 95.3 0.014 3.1E-07 42.7 2.6 39 5-45 1-39 (39)
46 KOG0824 Predicted E3 ubiquitin 95.1 0.0099 2.1E-07 64.3 1.6 55 1-57 6-61 (324)
47 KOG2164 Predicted E3 ubiquitin 94.9 0.014 3.1E-07 67.1 2.3 47 2-49 186-235 (513)
48 TIGR00599 rad18 DNA repair pro 94.7 0.017 3.7E-07 65.8 2.3 44 4-50 28-71 (397)
49 COG5432 RAD18 RING-finger-cont 94.5 0.018 3.9E-07 61.8 1.9 44 4-50 27-70 (391)
50 PF15227 zf-C3HC4_4: zinc fing 94.4 0.027 5.9E-07 44.0 2.2 40 5-45 1-42 (42)
51 KOG1039 Predicted E3 ubiquitin 94.4 0.021 4.6E-07 63.8 2.1 51 2-53 161-224 (344)
52 PF12678 zf-rbx1: RING-H2 zinc 94.2 0.042 9E-07 48.1 3.2 42 2-46 19-73 (73)
53 KOG4173 Alpha-SNAP protein [In 94.0 0.017 3.6E-07 59.4 0.2 112 158-280 43-171 (253)
54 PHA00616 hypothetical protein 94.0 0.034 7.3E-07 44.1 1.9 28 249-282 1-28 (44)
55 COG5189 SFP1 Putative transcri 93.9 0.022 4.7E-07 61.9 0.9 23 193-215 348-372 (423)
56 PHA00616 hypothetical protein 93.7 0.03 6.5E-07 44.4 1.2 27 145-180 1-27 (44)
57 PF13894 zf-C2H2_4: C2H2-type 93.4 0.023 5E-07 37.8 0.1 24 108-143 1-24 (24)
58 smart00504 Ubox Modified RING 93.1 0.098 2.1E-06 43.6 3.4 45 3-50 2-46 (63)
59 PF13894 zf-C2H2_4: C2H2-type 92.8 0.076 1.6E-06 35.2 2.0 24 250-279 1-24 (24)
60 PF00096 zf-C2H2: Zinc finger, 92.8 0.024 5.2E-07 38.0 -0.5 14 128-141 9-22 (23)
61 PF13465 zf-H2C2_2: Zinc-finge 92.3 0.052 1.1E-06 38.1 0.6 12 216-227 12-23 (26)
62 PF00096 zf-C2H2: Zinc finger, 91.8 0.11 2.4E-06 34.7 1.8 22 250-277 1-22 (23)
63 COG5189 SFP1 Putative transcri 91.5 0.05 1.1E-06 59.2 -0.3 48 216-276 347-419 (423)
64 KOG2879 Predicted E3 ubiquitin 91.1 0.13 2.9E-06 55.2 2.4 50 2-52 239-289 (298)
65 KOG2177 Predicted E3 ubiquitin 91.0 0.085 1.8E-06 55.6 0.9 40 4-46 15-54 (386)
66 KOG0287 Postreplication repair 90.6 0.12 2.6E-06 56.8 1.5 42 4-49 25-67 (442)
67 PF13912 zf-C2H2_6: C2H2-type 90.5 0.096 2.1E-06 36.5 0.5 24 108-143 2-25 (27)
68 KOG0825 PHD Zn-finger protein 89.8 0.11 2.4E-06 62.2 0.5 19 39-57 160-178 (1134)
69 COG5243 HRD1 HRD ubiquitin lig 89.0 0.23 5E-06 55.3 2.2 45 2-49 287-344 (491)
70 KOG0802 E3 ubiquitin ligase [P 88.7 0.2 4.4E-06 59.7 1.6 45 1-48 290-339 (543)
71 PF13912 zf-C2H2_6: C2H2-type 88.7 0.21 4.6E-06 34.8 1.1 25 250-280 2-26 (27)
72 PF12861 zf-Apc11: Anaphase-pr 88.3 0.34 7.4E-06 43.8 2.4 47 2-49 21-81 (85)
73 PF14835 zf-RING_6: zf-RING of 88.3 0.26 5.6E-06 42.2 1.5 41 4-49 9-50 (65)
74 PF13445 zf-RING_UBOX: RING-ty 88.0 0.37 8E-06 38.1 2.1 37 5-43 1-43 (43)
75 KOG2482 Predicted C2H2-type Zn 87.2 0.53 1.1E-05 52.1 3.5 76 195-278 280-357 (423)
76 KOG0297 TNF receptor-associate 86.3 1.6 3.4E-05 50.2 7.0 44 4-50 23-67 (391)
77 PF12171 zf-C2H2_jaz: Zinc-fin 85.5 0.47 1E-05 33.3 1.4 21 195-215 2-22 (27)
78 KOG4159 Predicted E3 ubiquitin 85.5 0.38 8.1E-06 55.1 1.4 45 4-51 86-130 (398)
79 COG5152 Uncharacterized conser 84.6 0.34 7.3E-06 49.8 0.4 44 4-50 198-241 (259)
80 KOG2893 Zn finger protein [Gen 83.4 0.28 6.2E-06 51.6 -0.7 53 220-285 12-64 (341)
81 PF14570 zf-RING_4: RING/Ubox 82.9 0.54 1.2E-05 38.1 0.9 42 5-48 1-46 (48)
82 smart00355 ZnF_C2H2 zinc finge 82.3 0.7 1.5E-05 30.7 1.1 20 196-215 2-21 (26)
83 COG5175 MOT2 Transcriptional r 82.0 0.65 1.4E-05 51.2 1.3 46 2-49 14-63 (480)
84 PF12874 zf-met: Zinc-finger o 81.8 0.42 9.2E-06 32.6 -0.1 21 219-246 1-21 (25)
85 PF12874 zf-met: Zinc-finger o 81.8 0.69 1.5E-05 31.5 1.0 13 265-277 10-22 (25)
86 KOG1813 Predicted E3 ubiquitin 81.8 0.56 1.2E-05 51.1 0.8 48 4-54 243-290 (313)
87 KOG1428 Inhibitor of type V ad 81.2 0.18 3.9E-06 63.6 -3.5 57 2-59 3486-3553(3738)
88 PHA02862 5L protein; Provision 80.9 0.88 1.9E-05 44.9 1.7 49 1-50 1-53 (156)
89 PF13909 zf-H2C2_5: C2H2-type 79.9 1.4 3E-05 29.8 2.0 24 250-280 1-24 (24)
90 PF02671 PAH: Paired amphipath 79.8 5.4 0.00012 31.6 5.6 44 581-624 2-47 (47)
91 PF12171 zf-C2H2_jaz: Zinc-fin 79.5 1.2 2.5E-05 31.3 1.5 22 108-141 2-23 (27)
92 KOG2482 Predicted C2H2-type Zn 79.1 0.89 1.9E-05 50.4 1.2 27 194-220 195-222 (423)
93 PF09237 GAGA: GAGA factor; I 77.2 1.1 2.3E-05 36.8 0.8 29 248-282 23-51 (54)
94 KOG1146 Homeobox protein [Gene 77.2 0.46 9.9E-06 60.5 -1.9 29 248-283 1328-1356(1406)
95 PF13909 zf-H2C2_5: C2H2-type 77.0 0.71 1.5E-05 31.3 -0.2 23 108-143 1-23 (24)
96 PF14447 Prok-RING_4: Prokaryo 76.7 1.4 2.9E-05 36.7 1.3 43 3-50 8-50 (55)
97 smart00355 ZnF_C2H2 zinc finge 76.2 2.4 5.2E-05 28.0 2.3 23 250-278 1-23 (26)
98 KOG1146 Homeobox protein [Gene 75.5 1.1 2.5E-05 57.1 0.9 66 196-275 1230-1304(1406)
99 KOG4628 Predicted E3 ubiquitin 74.7 2.2 4.8E-05 48.0 2.7 45 4-50 231-278 (348)
100 smart00451 ZnF_U1 U1-like zinc 73.7 1.8 3.9E-05 31.7 1.2 22 194-215 3-24 (35)
101 PF09237 GAGA: GAGA factor; I 73.5 1.9 4.1E-05 35.4 1.4 33 212-251 17-50 (54)
102 PHA02825 LAP/PHD finger-like p 72.6 3.2 6.9E-05 41.8 3.0 56 1-57 7-66 (162)
103 KOG0311 Predicted E3 ubiquitin 72.3 0.75 1.6E-05 51.3 -1.6 45 4-50 45-90 (381)
104 KOG1001 Helicase-like transcri 71.2 1.6 3.6E-05 53.3 0.8 46 3-50 455-500 (674)
105 KOG4204 Histone deacetylase co 68.0 19 0.00041 38.6 7.9 71 556-630 17-89 (231)
106 COG5602 SIN3 Histone deacetyla 67.4 62 0.0013 40.6 12.6 53 554-610 124-176 (1163)
107 KOG2932 E3 ubiquitin ligase in 66.3 3 6.5E-05 45.8 1.5 39 4-47 92-131 (389)
108 KOG1002 Nucleotide excision re 64.7 1.9 4.1E-05 50.2 -0.4 50 3-53 537-589 (791)
109 PF09538 FYDLN_acid: Protein o 63.5 5.4 0.00012 37.8 2.4 26 195-227 10-35 (108)
110 PRK04860 hypothetical protein; 61.9 3.8 8.2E-05 41.4 1.2 26 168-205 129-154 (160)
111 PF13913 zf-C2HC_2: zinc-finge 61.5 4.2 9.1E-05 28.4 1.0 20 195-215 3-22 (25)
112 smart00744 RINGv The RING-vari 61.3 6.5 0.00014 31.8 2.2 42 4-46 1-49 (49)
113 PLN02436 cellulose synthase A 60.5 5.9 0.00013 50.4 2.7 48 3-52 37-91 (1094)
114 PLN02189 cellulose synthase 59.9 6.3 0.00014 50.0 2.8 48 3-52 35-89 (1040)
115 KOG0827 Predicted E3 ubiquitin 58.1 6.3 0.00014 44.6 2.1 50 3-54 5-61 (465)
116 KOG2785 C2H2-type Zn-finger pr 57.1 5.7 0.00012 45.0 1.6 75 194-278 166-243 (390)
117 PHA02929 N1R/p28-like protein; 57.1 9 0.00019 41.2 3.0 22 35-56 212-233 (238)
118 KOG1734 Predicted RING-contain 54.4 4.5 9.8E-05 43.8 0.3 47 2-50 224-281 (328)
119 KOG3800 Predicted E3 ubiquitin 54.2 8.4 0.00018 42.2 2.2 45 4-50 2-51 (300)
120 PF04641 Rtf2: Rtf2 RING-finge 53.9 12 0.00026 40.6 3.4 43 4-50 115-161 (260)
121 smart00451 ZnF_U1 U1-like zinc 53.7 9.2 0.0002 27.9 1.8 22 218-246 3-24 (35)
122 smart00531 TFIIE Transcription 53.5 6.4 0.00014 39.0 1.2 34 193-227 98-132 (147)
123 KOG3039 Uncharacterized conser 52.5 12 0.00025 40.3 2.9 43 4-49 223-269 (303)
124 COG1198 PriA Primosomal protei 52.3 9.6 0.00021 47.2 2.6 53 188-260 429-484 (730)
125 PLN02400 cellulose synthase 52.3 8 0.00017 49.3 2.0 48 3-52 37-91 (1085)
126 PF04564 U-box: U-box domain; 51.4 14 0.0003 32.2 2.8 44 4-50 6-50 (73)
127 PF07800 DUF1644: Protein of u 50.8 54 0.0012 33.2 7.0 56 218-282 80-135 (162)
128 KOG2660 Locus-specific chromos 50.1 4.5 9.7E-05 45.0 -0.6 42 4-48 17-59 (331)
129 PF03854 zf-P11: P-11 zinc fin 50.0 6.2 0.00013 32.0 0.3 32 18-51 16-47 (50)
130 PRK06253 O-phosphoseryl-tRNA s 49.9 25 0.00055 41.8 5.4 61 569-629 112-184 (529)
131 KOG4204 Histone deacetylase co 47.7 46 0.001 35.7 6.6 62 566-627 131-194 (231)
132 KOG4362 Transcriptional regula 47.0 4.8 0.0001 48.9 -1.0 49 1-50 20-69 (684)
133 PLN02638 cellulose synthase A 45.6 15 0.00033 46.9 3.0 46 3-50 18-70 (1079)
134 PLN02915 cellulose synthase A 45.4 15 0.00033 46.8 2.8 46 3-50 16-68 (1044)
135 KOG4173 Alpha-SNAP protein [In 44.8 4.2 9E-05 42.4 -1.7 51 106-176 78-128 (253)
136 COG1198 PriA Primosomal protei 43.7 9.9 0.00022 47.1 0.9 24 193-227 461-484 (730)
137 KOG2785 C2H2-type Zn-finger pr 43.2 17 0.00037 41.3 2.5 76 105-217 164-243 (390)
138 KOG3002 Zn finger protein [Gen 42.6 13 0.00027 41.4 1.5 40 4-50 50-91 (299)
139 PF14569 zf-UDP: Zinc-binding 42.4 16 0.00034 32.7 1.7 46 3-50 10-62 (80)
140 KOG4185 Predicted E3 ubiquitin 42.4 12 0.00026 41.0 1.3 45 3-49 4-54 (296)
141 TIGR02300 FYDLN_acid conserved 41.3 18 0.0004 35.2 2.1 26 195-227 10-35 (129)
142 TIGR00470 sepS O-phosphoseryl- 40.5 38 0.00082 40.0 4.8 75 569-646 112-198 (533)
143 PF10581 Synapsin_N: Synapsin 39.6 15 0.00033 26.9 1.0 24 772-795 2-31 (32)
144 PF12013 DUF3505: Protein of u 39.6 19 0.00041 33.6 2.0 76 194-280 11-109 (109)
145 cd00350 rubredoxin_like Rubred 39.4 19 0.0004 26.7 1.5 25 195-227 2-26 (33)
146 PRK03564 formate dehydrogenase 38.9 20 0.00044 40.0 2.3 11 194-204 212-222 (309)
147 KOG0978 E3 ubiquitin ligase in 38.9 14 0.00031 45.2 1.2 21 194-214 678-698 (698)
148 PF09986 DUF2225: Uncharacteri 38.9 31 0.00066 36.5 3.6 18 38-55 4-21 (214)
149 COG2331 Uncharacterized protei 38.6 12 0.00027 33.1 0.5 18 240-259 23-41 (82)
150 PF05290 Baculo_IE-1: Baculovi 38.5 20 0.00043 35.2 1.8 46 4-50 82-132 (140)
151 PRK04860 hypothetical protein; 38.5 11 0.00025 38.0 0.3 30 194-227 119-152 (160)
152 PRK14873 primosome assembly pr 37.3 19 0.00042 44.3 2.0 59 187-266 376-437 (665)
153 KOG0804 Cytoplasmic Zn-finger 36.0 14 0.0003 42.8 0.5 41 4-49 177-221 (493)
154 COG5220 TFB3 Cdk activating ki 35.9 8.6 0.00019 41.0 -1.1 47 4-52 12-66 (314)
155 KOG1280 Uncharacterized conser 35.9 77 0.0017 35.9 6.1 9 107-115 79-87 (381)
156 COG5602 SIN3 Histone deacetyla 34.5 80 0.0017 39.7 6.4 61 567-627 274-336 (1163)
157 TIGR00595 priA primosomal prot 34.2 28 0.0006 41.5 2.6 58 188-265 207-267 (505)
158 PF04216 FdhE: Protein involve 34.2 9.2 0.0002 42.1 -1.3 33 193-235 196-228 (290)
159 PRK00464 nrdR transcriptional 33.5 14 0.0003 37.3 -0.0 38 196-241 2-44 (154)
160 COG5048 FOG: Zn-finger [Genera 33.1 18 0.00039 40.1 0.8 29 248-280 415-443 (467)
161 PRK06266 transcription initiat 32.0 19 0.00041 37.1 0.7 30 193-227 116-145 (178)
162 PF13821 DUF4187: Domain of un 32.0 26 0.00057 29.2 1.4 28 210-244 19-46 (55)
163 KOG2186 Cell growth-regulating 32.0 20 0.00044 38.6 0.9 46 146-215 4-49 (276)
164 PRK05580 primosome assembly pr 31.8 41 0.00089 41.6 3.6 62 188-269 375-439 (679)
165 KOG3002 Zn finger protein [Gen 31.6 53 0.0011 36.7 4.1 74 194-282 80-166 (299)
166 PF08044 DUF1707: Domain of un 31.6 1E+02 0.0023 25.5 4.8 48 578-625 4-51 (53)
167 TIGR00373 conserved hypothetic 31.2 22 0.00047 35.8 0.9 30 193-227 108-137 (158)
168 PF12174 RST: RCD1-SRO-TAF4 (R 30.8 1.9E+02 0.0041 25.4 6.5 52 567-621 13-65 (70)
169 KOG2593 Transcription initiati 29.3 41 0.0009 39.0 2.8 34 193-226 127-161 (436)
170 KOG2391 Vacuolar sorting prote 28.5 93 0.002 35.1 5.2 61 552-612 285-345 (365)
171 TIGR01562 FdhE formate dehydro 28.0 42 0.00091 37.5 2.5 25 193-227 209-233 (305)
172 PLN02195 cellulose synthase A 27.0 37 0.0008 43.3 2.1 45 4-50 8-59 (977)
173 PF09538 FYDLN_acid: Protein o 26.9 31 0.00067 32.8 1.1 29 24-52 10-39 (108)
174 KOG2113 Predicted RNA binding 26.3 30 0.00065 38.4 1.0 45 4-49 138-182 (394)
175 KOG3842 Adaptor protein Pellin 25.2 49 0.0011 36.8 2.4 46 2-49 341-413 (429)
176 KOG2932 E3 ubiquitin ligase in 24.8 42 0.00092 37.3 1.8 79 195-281 91-173 (389)
177 TIGR00595 priA primosomal prot 24.7 44 0.00096 39.8 2.1 24 193-227 239-262 (505)
178 KOG4445 Uncharacterized conser 23.9 24 0.00051 39.0 -0.3 29 4-33 120-148 (368)
179 KOG3408 U1-like Zn-finger-cont 23.6 31 0.00068 33.3 0.5 23 193-215 56-78 (129)
180 KOG2186 Cell growth-regulating 23.4 35 0.00075 36.9 0.8 44 219-277 4-50 (276)
181 PRK14873 primosome assembly pr 23.4 45 0.00097 41.2 1.8 23 193-227 409-431 (665)
182 PF02318 FYVE_2: FYVE-type zin 22.5 17 0.00037 34.7 -1.5 45 3-49 55-104 (118)
183 KOG4367 Predicted Zn-finger pr 22.5 42 0.0009 38.7 1.2 34 1-35 1-36 (699)
184 KOG2272 Focal adhesion protein 22.4 66 0.0014 34.8 2.6 60 193-259 220-288 (332)
185 cd00729 rubredoxin_SM Rubredox 22.0 49 0.0011 24.8 1.1 25 195-227 3-27 (34)
186 KOG1023 Natriuretic peptide re 22.0 91 0.002 37.1 4.0 135 564-711 195-338 (484)
187 COG4049 Uncharacterized protei 21.5 24 0.00052 29.6 -0.6 24 108-143 18-41 (65)
188 PF14353 CpXC: CpXC protein 20.4 24 0.00051 33.9 -1.1 33 195-227 2-47 (128)
189 COG4896 Uncharacterized protei 20.2 34 0.00074 29.2 -0.0 33 219-259 3-39 (68)
190 PF02891 zf-MIZ: MIZ/SP-RING z 20.2 88 0.0019 25.5 2.4 43 4-47 4-49 (50)
No 1
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-56 Score=512.14 Aligned_cols=650 Identities=31% Similarity=0.426 Sum_probs=427.2
Q ss_pred CcccccccccceeeeecCCCcccccchHhHHHhHhCCCccccccccCceEEEeccCCCccccccCCCCCCcccccCcccc
Q 003291 3 DSCAVCADTLEWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTENNVVFVTKALGDYTRMISDFSVLPTELREGRVGS 82 (833)
Q Consensus 3 ~~C~IC~e~~~~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~~V~~tk~l~d~~~~~~~fs~l~~~~~e~k~g~ 82 (833)
+.|+||+...+|.+++.|+|..+|..|++|||.++++..|.+|+.++..++.++.+++++..+..|. ++..+.
T Consensus 1 ~~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~s~~~~~~~~~t~~-------~~~~~~ 73 (669)
T KOG2231|consen 1 DSCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETKSNGDSSDAVGTFP-------EGRKCD 73 (669)
T ss_pred CCcceeecCccccccccccccccchhhhhhhhhhcccccccccCcccccceeeeccccccccccccc-------cccccc
Confidence 4699999999999999999998999999999999998888888888888888887777776655554 445567
Q ss_pred eeeeccccccc-cchHHHHHHHhhcccccccCCCCCC--CCCC--CcccccccChhhhhcccccccCccccCcccCCCcc
Q 003291 83 YWYHEDTQAFF-DDVDHYKMIKAMCRLSCSVCDNMEG--PNDG--SKRRARFRNIEQLKGHLFHRHKLLMCSLCLEGRKV 157 (833)
Q Consensus 83 ~~~~e~~~~~f-~d~~~~k~i~~l~~~~C~~C~k~~~--~~~g--~~~~~~F~s~~~Lk~Hlr~~H~~~~C~iC~k~~Kv 157 (833)
+|++++..++| +|..+|.+++.++.+.|.+|+.... .+++ ..+ ..|.++..|+.||+..|+.++|.+|..++|+
T Consensus 74 ~~~~e~~~~if~~d~~~y~~~~~~~~~~C~~C~~~~~~~~~~~~~~~c-~~~~s~~~Lk~H~~~~H~~~~c~lC~~~~ki 152 (669)
T KOG2231|consen 74 FDEHEDTCVIFFADKLTYTKLEACLHHSCHICDRRFRALYNKKECLHC-TEFKSVENLKNHMRDQHKLHLCSLCLQNLKI 152 (669)
T ss_pred cccccceeeeeeccccHHHHHHHHHhhhcCccccchhhhcccCCCccc-cchhHHHHHHHHHHHhhhhhcccccccccee
Confidence 78888876555 9999999999999999999998221 0011 012 4677999999999999999999999999999
Q ss_pred ccccccccCHHHHHHHHhcCCCCCCCCcccCCCCCCCCCCCCCCCccCCchhHhhhccCCcccCCCCCCccCCcccccCC
Q 003291 158 FICEQKLYTRAQLNQHINSGDSVVDGTESERGGFMGHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQHPGQYEYYKN 237 (833)
Q Consensus 158 F~~E~~fyt~~~L~~H~r~h~~e~~g~~~~~~g~~~h~~C~~C~k~F~~~~~L~~Hmrekhf~C~iC~k~~~~~~~yF~~ 237 (833)
|++|+++|++.+|.+|++.++.+ ..++++|++|+||..+|++.++|++||+..||.|++|++. +++++||.+
T Consensus 153 f~~e~k~Yt~~el~~h~~~gd~d-------~~s~rGhp~C~~C~~~fld~~el~rH~~~~h~~chfC~~~-~~~neyy~~ 224 (669)
T KOG2231|consen 153 FINERKLYTRAELNLHLMFGDPD-------DESCRGHPLCKFCHERFLDDDELYRHLRFDHEFCHFCDYK-TGQNEYYND 224 (669)
T ss_pred eeeeeehehHHHHHHHHhcCCCc-------cccccCCccchhhhhhhccHHHHHHhhccceeheeecCcc-cccchhccc
Confidence 99999999999999999998874 3567889999999999999999999999999999999984 799999999
Q ss_pred hhHHHhhhcCCCccCChhhhcccccccc-CChHHHHHHHHHhhCCCCChHhhhcccccCcccccccC-chhhcccCCCCC
Q 003291 238 YDDLEIHFRRDHFLCEDEACLAKKFVVF-QSEAEMKRHNAIEHGGRMSRAKRNAALQIPICFRYRRN-NEQEHRRGRGRT 315 (833)
Q Consensus 238 ~~~L~~H~r~kHy~C~~~~C~k~kfvvF-~s~~eLk~H~~~hHg~~~s~~~r~~~~~i~~~f~~~~~-~~~~~r~G~gr~ 315 (833)
|.+|+.|+|+.||.|++..|..++|++| ..+.+|++|. +++.+.|.|... .++++...++|+
T Consensus 225 ~~dLe~HfR~~HflCE~~~C~~~~f~~~~~~ei~lk~~~----------------~~~~~e~~~~~~~~r~Gr~s~~~r~ 288 (669)
T KOG2231|consen 225 YDDLEEHFRKGHFLCEEEFCRTKKFYVAFELEIELKAHN----------------RFIQHEKCYICRPSRPGRPSSRYRG 288 (669)
T ss_pred chHHHHHhhhcCccccccccccceeeehhHHHHHHHhhc----------------cccchheeccCCcccCCCCcccccC
Confidence 9999999999999999888999999877 8899999887 167778888765 343333333333
Q ss_pred CCCCCchHHHhHHHHHHhHhhhcCCCCCCCCCCcccccccCCCcccccccccccccccCCChhhhhH----HHHHhccCC
Q 003291 316 FHRESSDVNELSMAIQASLETVGADSTSYDPSSSRSLVSDHGDAEDIDTLIQPFESLATTDSELASR----YLQALGQNS 391 (833)
Q Consensus 316 ~~r~~~d~~~~s~ai~~~~~~a~~~~s~~~~s~s~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~----~~~~~~~~~ 391 (833)
.-+...+.+.++.. ......+.+....+. .....+...++...+++-.+.-...++ ..+.+...
T Consensus 289 ~~~~~~~~~~~~~~-~~~~~t~pq~~~~~~----------~~~~~~~s~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~- 356 (669)
T KOG2231|consen 289 PYRRLESHFRVSDE-ARDGSTAPQGKGNNF----------GSRRDEGSPLAGNRQELPSTANGNPSRFTSPNSSRINAA- 356 (669)
T ss_pred Cccccccccccccc-ccCccccCccccccC----------CccccccCcccccccccccccCCCCCcccCCccchhccc-
Confidence 21111110111110 000111111000000 000111111111111111111111111 11111111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc-chhHHHhhhccCCcceecccCCCCCCCCCCCCCCCCCCCCccccccC
Q 003291 392 RTAPLEESSFPPLPMASSSSQQNPRSNSEGLP-NSMAAHLRRKNNRNVTVLHAGLGWPSASQRPVLSSNNSTQPRRAANI 470 (833)
Q Consensus 392 ~~~~~~ee~fP~L~~~s~~~~~~s~~~~~~~~-~t~a~~lr~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 470 (833)
.+......|..-+. -.+.+++.++. +.+..+++..+++.+..-...++|+..+.++...+......-+..+.
T Consensus 357 --sr~~~~a~~~~~~~-----~~S~~~s~S~~~~~~~~~~~~~t~r~a~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 429 (669)
T KOG2231|consen 357 --SRQIRKADPAVVGQ-----IISLAGSSSSSSTPGRSRISPVTNRSAAAPGAAAPYPAPNRGPGENSIKSLRRVPSSGR 429 (669)
T ss_pred --cccccccccccccc-----ccccCCCCcCcCccccccccccccccccCCccccCccccccCccccccccccccccccc
Confidence 12222333333211 11222222222 45555666666666555455567777776665533221111111111
Q ss_pred CCCCcCCCCCCCccccchhhhhhhhhhcccccccccCCCCCCcccccccCCCCCCCCCCCC--CCCCCCCCcc--cccCC
Q 003291 471 GSAVSQSSSGSRTVSCKAASAQAQVLAQSTAVSSASSRNSGNIRRITHSASAPNLANGSVE--PSVSDFPPVS--AMRTD 546 (833)
Q Consensus 471 ~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~p~~~~~~~~--~~~~~~p~~s--a~~~~ 546 (833)
.+.+.+.+.-........++.+.......+-++ ++++.|+..++.+. ++.++.|.++ ...++
T Consensus 430 s~~~~s~~~~rv~~~~p~a~~~~~~~~k~~e~~--------------~~ps~~~~ss~r~~~~~~ss~~~~~s~~~~~n~ 495 (669)
T KOG2231|consen 430 SAASQSLSSDRVEQTRPLASVVLQIARKAAETP--------------SSPSSPYNSSTRSTAQPSSSLGPQSSLPSLKNR 495 (669)
T ss_pred chhhccccccccccCCCcchhhhhhhhhccccC--------------CCCcchhhhhcccccCCccccCccccchhhcCc
Confidence 111111110000000111111111111011111 22233333222222 3455555554 22222
Q ss_pred C---CCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhccCCcChHHHHHHHHHhhhhhhHHHHHhhC
Q 003291 547 K---MPSISQPAPSVENIQAANRSLVERMRAAFEYDEDKYTAFKDITAQYRQGLIDTRKYLEYVKQYGLSHLVLELARLC 623 (833)
Q Consensus 547 ~---~~~~~~~~~~~~~~~~~nk~lvekir~~L~~d~~~f~~Fk~~s~~~r~G~i~~~~y~~~~~~~gl~~lv~ela~Ll 623 (833)
+ ++........+.++..+|++|+|+++..|+.+|+.|.+||..+..||.++|++..|++++.-+|+.++++++++|+
T Consensus 496 ~s~~~s~~~~~~~g~p~~~~~~~~~~e~~~~~~~~~e~~~~~~k~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 575 (669)
T KOG2231|consen 496 KSSSTSAPRGHSQGPPDVSSANKALGEKNIKNLGHKESPSAAPKNFSGKYRKNSIDARTNGAPVTPYGLSPLLLDGARLC 575 (669)
T ss_pred cccccCCCCCCCCCCCCcccchhhhhHHhhhccccccchhhCcCCCCCcccccccchhhccCcCCCcCCCccccCCCCCC
Confidence 1 1222223344568899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhhccCcccCCCccccccccccccCCCCCCCCccccccccCCCCCccccCCCChhhHhhhhhHHHH
Q 003291 624 PDALKQKELIETYNATLQGNNQLDNDWAHISVRAKDTNGSKKSKGKSVATEACKNDKGKSTVANDSNSKHAVANNFLSTV 703 (833)
Q Consensus 624 Pd~~K~~eL~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (833)
|++..+.+|.+.+++.+.. |-+++++.+ .++.++..++|..++
T Consensus 576 ppp~~~s~i~~~~~a~~~~----------------------k~~~~~~~~---------------~~~p~s~~~~~~~~~ 618 (669)
T KOG2231|consen 576 PPPGLVSNIIKSSNALLNS----------------------KNKPKPVKY---------------PDPPDSKPRNQILTV 618 (669)
T ss_pred CCchhccccccCccccccc----------------------ccccccccc---------------CCCCCcccccccchh
Confidence 9999999999888765541 334444543 578889999999999
Q ss_pred HHHhhcCCCCccccceeccCCCCCCCCCCCCcccccccCCCcccccCCCCCccccCCCCCCccccccccccccc
Q 003291 704 RELQSSFKPSEEDEEVLSKDGYRGAKGKSKPMVDEQLRGQNDLTSAGGGSSQTSVDRGGGGKQRKKTSKFHRVR 777 (833)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~s~~~~~~ 777 (833)
+.+|....++++. -+|.-|+.++|+.+... + .+. ....++.+|++||+++|
T Consensus 619 ~~~~~~~~~q~~~---k~~~~~~~~~~~~~~~~-----~------~~~---------~~k~q~~~~~~~~~~~~ 669 (669)
T KOG2231|consen 619 RRLQLLDPKQAGK---KDKFQDGSDSGNLYFLN-----L------FSE---------LDKQQELKKTHKFHRNR 669 (669)
T ss_pred hhhhhccchhhhc---ccccccccccccccccc-----c------ccc---------cccccccccccccccCC
Confidence 9999999999888 46778888888755111 0 000 02357889999999986
No 2
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=100.00 E-value=1.3e-46 Score=394.95 Aligned_cols=245 Identities=33% Similarity=0.687 Sum_probs=217.3
Q ss_pred CcccccccccceeeeecCCCcccccchHhHHHhHhCCCccccccccCceEEEeccCCCccccccCCCCCCcccccCcccc
Q 003291 3 DSCAVCADTLEWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTENNVVFVTKALGDYTRMISDFSVLPTELREGRVGS 82 (833)
Q Consensus 3 ~~C~IC~e~~~~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~~V~~tk~l~d~~~~~~~fs~l~~~~~e~k~g~ 82 (833)
+.|+||++.+.|.++.||+|+ +|+.|++|||+||+++.|++||+|.+.|+||+.. +..|.|-... ..++++
T Consensus 62 ~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V~fT~~~---~~DI~D~~~~--k~~~EK--- 132 (493)
T COG5236 62 MNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAVVFTASS---PADITDRRQW--KGREEK--- 132 (493)
T ss_pred ceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceEEEecCC---CCcchhHhhh--cccccc---
Confidence 469999999999999999997 9999999999999999999999999999999762 2222221111 113444
Q ss_pred eeeeccccccccchHHHHHHHhhccccccc--CCCCCCCCCCCcccccccChhhhhcccccccCccccCcccCCCccccc
Q 003291 83 YWYHEDTQAFFDDVDHYKMIKAMCRLSCSV--CDNMEGPNDGSKRRARFRNIEQLKGHLFHRHKLLMCSLCLEGRKVFIC 160 (833)
Q Consensus 83 ~~~~e~~~~~f~d~~~~k~i~~l~~~~C~~--C~k~~~~~~g~~~~~~F~s~~~Lk~Hlr~~H~~~~C~iC~k~~KvF~~ 160 (833)
+.++|.+++...+...|+.|.||. |+. +...|..|+.|.+..|+.+.|.+|..++|+|++
T Consensus 133 ------~GI~y~~E~v~~E~~~LL~F~CP~skc~~------------~C~~~k~lk~H~K~~H~~~~C~~C~~nKk~F~~ 194 (493)
T COG5236 133 ------VGIFYEGEDVRDEMEDLLSFKCPKSKCHR------------RCGSLKELKKHYKAQHGFVLCSECIGNKKDFWN 194 (493)
T ss_pred ------eeeeecchHHHHHHHHHHHhcCCchhhhh------------hhhhHHHHHHHHHhhcCcEEhHhhhcCcccCcc
Confidence 455667777788888999999994 665 445599999999999999999999999999999
Q ss_pred cccccCHHHHHHHHhcCCCCCCCCcccCCCCCCCCCCCCCCCccCCchhHhhhccCCcccCCCCCCccCCcccccCChhH
Q 003291 161 EQKLYTRAQLNQHINSGDSVVDGTESERGGFMGHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQHPGQYEYYKNYDD 240 (833)
Q Consensus 161 E~~fyt~~~L~~H~r~h~~e~~g~~~~~~g~~~h~~C~~C~k~F~~~~~L~~Hmrekhf~C~iC~k~~~~~~~yF~~~~~ 240 (833)
|+.+++...|..|...|+.+ .||++||+|.||.++||+.++|++|||++|..|+||++.++..++||++|.+
T Consensus 195 E~~lF~~~~Lr~H~~~G~~e--------~GFKGHP~C~FC~~~FYdDDEL~~HcR~~HE~ChICD~v~p~~~QYFK~Y~~ 266 (493)
T COG5236 195 EIRLFRSSTLRDHKNGGLEE--------EGFKGHPLCIFCKIYFYDDDELRRHCRLRHEACHICDMVGPIRYQYFKSYED 266 (493)
T ss_pred ceeeeecccccccccCCccc--------cCcCCCchhhhccceecChHHHHHHHHhhhhhhhhhhccCccchhhhhCHHH
Confidence 99999999999999887765 5999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCccCChhhhccccccccCChHHHHHHHHHhhCCC
Q 003291 241 LEIHFRRDHFLCEDEACLAKKFVVFQSEAEMKRHNAIEHGGR 282 (833)
Q Consensus 241 L~~H~r~kHy~C~~~~C~k~kfvvF~s~~eLk~H~~~hHg~~ 282 (833)
|+.||+..||.|..+.|...||+||....+|..|+...|+..
T Consensus 267 Le~HF~~~hy~ct~qtc~~~k~~vf~~~~el~~h~~~~h~~~ 308 (493)
T COG5236 267 LEAHFRNAHYCCTFQTCRVGKCYVFPYHTELLEHLTRFHKVN 308 (493)
T ss_pred HHHHhhcCceEEEEEEEecCcEEEeccHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999964
No 3
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.62 E-value=3.6e-16 Score=163.65 Aligned_cols=125 Identities=19% Similarity=0.448 Sum_probs=113.5
Q ss_pred hcccccccCCCCCCCCCCCcccccccChhhhhccccccc-----CccccCcccCCCccccccccccCHHHHHHHHhcCCC
Q 003291 105 MCRLSCSVCDNMEGPNDGSKRRARFRNIEQLKGHLFHRH-----KLLMCSLCLEGRKVFICEQKLYTRAQLNQHINSGDS 179 (833)
Q Consensus 105 l~~~~C~~C~k~~~~~~g~~~~~~F~s~~~Lk~Hlr~~H-----~~~~C~iC~k~~KvF~~E~~fyt~~~L~~H~r~h~~ 179 (833)
.-+|.|+.|++ .+.+...|-+|.++|- +.+.|..|++ .+.+...|..|+++|+-
T Consensus 128 ~~r~~c~eCgk------------~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K---------~YvSmpALkMHirTH~l 186 (279)
T KOG2462|consen 128 HPRYKCPECGK------------SYSTSSNLSRHKQTHRSLDSKKAFSCKYCGK---------VYVSMPALKMHIRTHTL 186 (279)
T ss_pred CCceecccccc------------ccccccccchhhcccccccccccccCCCCCc---------eeeehHHHhhHhhccCC
Confidence 45799999999 9999999999987543 3588999999 88999999999999973
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCccCCchhHhhhcc----CCcccCCCCCCccCCcccccCChhHHHhhhcC----CCcc
Q 003291 180 VVDGTESERGGFMGHPMCEFCRTPFYGDNELYTHMS----TEHYTCHICQRQHPGQYEYYKNYDDLEIHFRR----DHFL 251 (833)
Q Consensus 180 e~~g~~~~~~g~~~h~~C~~C~k~F~~~~~L~~Hmr----ekhf~C~iC~k~~~~~~~yF~~~~~L~~H~r~----kHy~ 251 (833)
+..|.+|||.|....-|.-|+| ||||.|.+|+|. |.++.+|+.|+.+ ++|.
T Consensus 187 --------------~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kA-------FADRSNLRAHmQTHS~~K~~q 245 (279)
T KOG2462|consen 187 --------------PCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKA-------FADRSNLRAHMQTHSDVKKHQ 245 (279)
T ss_pred --------------CcccccccccccchHHhhcccccccCCCCccCCcccch-------hcchHHHHHHHHhhcCCcccc
Confidence 4799999999999999999999 999999999999 9999999999986 8999
Q ss_pred CChhhhccccccccCChHHHHHHHHH
Q 003291 252 CEDEACLAKKFVVFQSEAEMKRHNAI 277 (833)
Q Consensus 252 C~~~~C~k~kfvvF~s~~eLk~H~~~ 277 (833)
|.. |.+. |...+.|.+|...
T Consensus 246 C~~--C~Ks----Fsl~SyLnKH~ES 265 (279)
T KOG2462|consen 246 CPR--CGKS----FALKSYLNKHSES 265 (279)
T ss_pred Ccc--hhhH----HHHHHHHHHhhhh
Confidence 999 9986 9999999999754
No 4
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.48 E-value=1.5e-14 Score=151.67 Aligned_cols=102 Identities=21% Similarity=0.382 Sum_probs=95.5
Q ss_pred cccccccCCCCCCCCCCCcccccccChhhhhcccccccCccccCcccCCCccccccccccCHHHHHHHHhcCCCCCCCCc
Q 003291 106 CRLSCSVCDNMEGPNDGSKRRARFRNIEQLKGHLFHRHKLLMCSLCLEGRKVFICEQKLYTRAQLNQHINSGDSVVDGTE 185 (833)
Q Consensus 106 ~~~~C~~C~k~~~~~~g~~~~~~F~s~~~Lk~Hlr~~H~~~~C~iC~k~~KvF~~E~~fyt~~~L~~H~r~h~~e~~g~~ 185 (833)
..+.|++|++ .|.+...|+.|+|+|--.+.|.+|++ .|....-|+-|+|+|+||
T Consensus 160 ka~~C~~C~K------------~YvSmpALkMHirTH~l~c~C~iCGK---------aFSRPWLLQGHiRTHTGE----- 213 (279)
T KOG2462|consen 160 KAFSCKYCGK------------VYVSMPALKMHIRTHTLPCECGICGK---------AFSRPWLLQGHIRTHTGE----- 213 (279)
T ss_pred ccccCCCCCc------------eeeehHHHhhHhhccCCCcccccccc---------cccchHHhhcccccccCC-----
Confidence 4689999999 99999999999997666899999999 999999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCccCCchhHhhhcc----CCcccCCCCCCccCCcccccCChhHHHhhhcC
Q 003291 186 SERGGFMGHPMCEFCRTPFYGDNELYTHMS----TEHYTCHICQRQHPGQYEYYKNYDDLEIHFRR 247 (833)
Q Consensus 186 ~~~~g~~~h~~C~~C~k~F~~~~~L~~Hmr----ekhf~C~iC~k~~~~~~~yF~~~~~L~~H~r~ 247 (833)
++|.|..|++.|.|...|+.||+ .++|+|..|+|. |.....|.+|...
T Consensus 214 -------KPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~Ks-------Fsl~SyLnKH~ES 265 (279)
T KOG2462|consen 214 -------KPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKS-------FALKSYLNKHSES 265 (279)
T ss_pred -------CCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhH-------HHHHHHHHHhhhh
Confidence 89999999999999999999999 689999999998 9999999999753
No 5
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=7.5e-14 Score=162.57 Aligned_cols=54 Identities=31% Similarity=0.651 Sum_probs=47.5
Q ss_pred CCccccc-ccccceeeeecCCCcccccchHhHHHhHhCCCccccccccCceEEEecc
Q 003291 2 DDSCAVC-ADTLEWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTENNVVFVTKA 57 (833)
Q Consensus 2 ~~~C~IC-~e~~~~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~~V~~tk~ 57 (833)
++.|+|| .+.+.|..+-+|.|. +|..|..+.|++|+++.|++| ++.+.|-.++.
T Consensus 78 e~~~~if~~d~~~y~~~~~~~~~-~C~~C~~~~~~~~~~~~~~~c-~~~~s~~~Lk~ 132 (669)
T KOG2231|consen 78 EDTCVIFFADKLTYTKLEACLHH-SCHICDRRFRALYNKKECLHC-TEFKSVENLKN 132 (669)
T ss_pred cceeeeeeccccHHHHHHHHHhh-hcCccccchhhhcccCCCccc-cchhHHHHHHH
Confidence 5679999 778899999999996 999999999999999999999 88877655543
No 6
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=99.29 E-value=9.2e-13 Score=141.06 Aligned_cols=131 Identities=23% Similarity=0.475 Sum_probs=114.3
Q ss_pred hcccccccCCCCCCCCCCCcccccccChhhhhccccccc----CccccCcccCCCccccccccccCHHHHHHHHhcCCCC
Q 003291 105 MCRLSCSVCDNMEGPNDGSKRRARFRNIEQLKGHLFHRH----KLLMCSLCLEGRKVFICEQKLYTRAQLNQHINSGDSV 180 (833)
Q Consensus 105 l~~~~C~~C~k~~~~~~g~~~~~~F~s~~~Lk~Hlr~~H----~~~~C~iC~k~~KvF~~E~~fyt~~~L~~H~r~h~~e 180 (833)
-....|+.|+. -|.+...|-.|++.+. +.|.|..|.+ .|.+...|..|++.|-
T Consensus 205 eKvvACp~Cg~------------~F~~~tkl~DH~rRqt~l~~n~fqC~~C~K---------rFaTeklL~~Hv~rHv-- 261 (467)
T KOG3608|consen 205 EKVVACPHCGE------------LFRTKTKLFDHLRRQTELNTNSFQCAQCFK---------RFATEKLLKSHVVRHV-- 261 (467)
T ss_pred CeEEecchHHH------------HhccccHHHHHHHhhhhhcCCchHHHHHHH---------HHhHHHHHHHHHHHhh--
Confidence 34467999988 8999999999988544 4799999998 9999999999999876
Q ss_pred CCCCcccCCCCCCCCCCCCCCCccCCchhHhhhcc-----CCcccCCCCCCccCCcccccCChhHHHhhhcC---CCccC
Q 003291 181 VDGTESERGGFMGHPMCEFCRTPFYGDNELYTHMS-----TEHYTCHICQRQHPGQYEYYKNYDDLEIHFRR---DHFLC 252 (833)
Q Consensus 181 ~~g~~~~~~g~~~h~~C~~C~k~F~~~~~L~~Hmr-----ekhf~C~iC~k~~~~~~~yF~~~~~L~~H~r~---kHy~C 252 (833)
.++.|+.|+.......+|.+||+ +++|+|+.|++. |.+..+|.+|... --|.|
T Consensus 262 ------------n~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~-------c~~esdL~kH~~~HS~~~y~C 322 (467)
T KOG3608|consen 262 ------------NCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTR-------CVRESDLAKHVQVHSKTVYQC 322 (467)
T ss_pred ------------hcccccccccCCCChHHHHHHHHhhhccCCCccccchhhh-------hccHHHHHHHHHhccccceec
Confidence 57999999999999999999998 788999999998 9999999999873 34999
Q ss_pred ChhhhccccccccCChHHHHHHHHHhhCC
Q 003291 253 EDEACLAKKFVVFQSEAEMKRHNAIEHGG 281 (833)
Q Consensus 253 ~~~~C~k~kfvvF~s~~eLk~H~~~hHg~ 281 (833)
+++.|..+ |++...|++|++.+|.+
T Consensus 323 ~h~~C~~s----~r~~~q~~~H~~evhEg 347 (467)
T KOG3608|consen 323 EHPDCHYS----VRTYTQMRRHFLEVHEG 347 (467)
T ss_pred CCCCCcHH----HHHHHHHHHHHHHhccC
Confidence 99999876 99999999999999943
No 7
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.11 E-value=1.4e-11 Score=123.72 Aligned_cols=103 Identities=24% Similarity=0.544 Sum_probs=87.1
Q ss_pred ccccCcccCCCccccccccccCHHHHHHHHhcCCCCCCCCcccCCCCCCCCCCCCCCCccCCchhHhhhcc----CCccc
Q 003291 145 LLMCSLCLEGRKVFICEQKLYTRAQLNQHINSGDSVVDGTESERGGFMGHPMCEFCRTPFYGDNELYTHMS----TEHYT 220 (833)
Q Consensus 145 ~~~C~iC~k~~KvF~~E~~fyt~~~L~~H~r~h~~e~~g~~~~~~g~~~h~~C~~C~k~F~~~~~L~~Hmr----ekhf~ 220 (833)
.|.|.+|++ .|.-...|.+||+.|... +.+.|.|||+.|.+.-.|++|+| -+||+
T Consensus 117 ~ftCrvCgK---------~F~lQRmlnrh~kch~~v------------kr~lct~cgkgfndtfdlkrh~rthtgvrpyk 175 (267)
T KOG3576|consen 117 SFTCRVCGK---------KFGLQRMLNRHLKCHSDV------------KRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYK 175 (267)
T ss_pred eeeeehhhh---------hhhHHHHHHHHhhhccHH------------HHHHHhhccCcccchhhhhhhhccccCccccc
Confidence 688999998 888888899999988765 56799999999999999999998 68999
Q ss_pred CCCCCCccCCcccccCChhHHHhhhcC---------------CCccCChhhhccccccccCChHHHHHHHHHhhCC
Q 003291 221 CHICQRQHPGQYEYYKNYDDLEIHFRR---------------DHFLCEDEACLAKKFVVFQSEAEMKRHNAIEHGG 281 (833)
Q Consensus 221 C~iC~k~~~~~~~yF~~~~~L~~H~r~---------------kHy~C~~~~C~k~kfvvF~s~~eLk~H~~~hHg~ 281 (833)
|..|++. |.....|+.|.++ +-|.|++ |+.. -.....+..|++.||..
T Consensus 176 c~~c~ka-------ftqrcsleshl~kvhgv~~~yaykerr~kl~vced--cg~t----~~~~e~~~~h~~~~hp~ 238 (267)
T KOG3576|consen 176 CSLCEKA-------FTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCED--CGYT----SERPEVYYLHLKLHHPF 238 (267)
T ss_pred hhhhhHH-------HHhhccHHHHHHHHcCchHHHHHHHhhhheeeecc--cCCC----CCChhHHHHHHHhcCCC
Confidence 9999998 9999999999875 4599999 9842 34556788999999986
No 8
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=99.07 E-value=4.4e-11 Score=128.33 Aligned_cols=132 Identities=25% Similarity=0.465 Sum_probs=117.9
Q ss_pred cccccccCCCCCCCCCCCcccccccChhhhhcccccccCccccCcccCCCccccccccccCHHHHHHHHhcCCCCCCCCc
Q 003291 106 CRLSCSVCDNMEGPNDGSKRRARFRNIEQLKGHLFHRHKLLMCSLCLEGRKVFICEQKLYTRAQLNQHINSGDSVVDGTE 185 (833)
Q Consensus 106 ~~~~C~~C~k~~~~~~g~~~~~~F~s~~~Lk~Hlr~~H~~~~C~iC~k~~KvF~~E~~fyt~~~L~~H~r~h~~e~~g~~ 185 (833)
..|.|..|.| .|.+.+.|+.|++.|-.-|.|.+|.. ....++.|..||+.-+..
T Consensus 236 n~fqC~~C~K------------rFaTeklL~~Hv~rHvn~ykCplCdm---------tc~~~ssL~~H~r~rHs~----- 289 (467)
T KOG3608|consen 236 NSFQCAQCFK------------RFATEKLLKSHVVRHVNCYKCPLCDM---------TCSSASSLTTHIRYRHSK----- 289 (467)
T ss_pred CchHHHHHHH------------HHhHHHHHHHHHHHhhhccccccccc---------CCCChHHHHHHHHhhhcc-----
Confidence 4799999999 99999999999988778999999998 899999999999975554
Q ss_pred ccCCCCCCCCCCCCCCCccCCchhHhhhcc---CCcccCCC--CCCccCCcccccCChhHHHhhhcCC-------CccCC
Q 003291 186 SERGGFMGHPMCEFCRTPFYGDNELYTHMS---TEHYTCHI--CQRQHPGQYEYYKNYDDLEIHFRRD-------HFLCE 253 (833)
Q Consensus 186 ~~~~g~~~h~~C~~C~k~F~~~~~L~~Hmr---ekhf~C~i--C~k~~~~~~~yF~~~~~L~~H~r~k-------Hy~C~ 253 (833)
.++++|+.|+++|....+|.+|.. +--|.|.. |... |+.+..|.+|+++. +|.|.
T Consensus 290 ------dkpfKCd~Cd~~c~~esdL~kH~~~HS~~~y~C~h~~C~~s-------~r~~~q~~~H~~evhEg~np~~Y~CH 356 (467)
T KOG3608|consen 290 ------DKPFKCDECDTRCVRESDLAKHVQVHSKTVYQCEHPDCHYS-------VRTYTQMRRHFLEVHEGNNPILYACH 356 (467)
T ss_pred ------CCCccccchhhhhccHHHHHHHHHhccccceecCCCCCcHH-------HHHHHHHHHHHHHhccCCCCCceeee
Confidence 278999999999999999999998 55599998 8887 99999999999974 49999
Q ss_pred hhhhccccccccCChHHHHHHHHHhhCCC
Q 003291 254 DEACLAKKFVVFQSEAEMKRHNAIEHGGR 282 (833)
Q Consensus 254 ~~~C~k~kfvvF~s~~eLk~H~~~hHg~~ 282 (833)
. |.+- |.+-..|-+|+.+.|+-+
T Consensus 357 ~--Cdr~----ft~G~~L~~HL~kkH~f~ 379 (467)
T KOG3608|consen 357 C--CDRF----FTSGKSLSAHLMKKHGFR 379 (467)
T ss_pred c--chhh----hccchhHHHHHHHhhccc
Confidence 8 8864 999999999999999864
No 9
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=98.92 E-value=2.4e-10 Score=115.01 Aligned_cols=104 Identities=22% Similarity=0.476 Sum_probs=87.5
Q ss_pred cccccccCCCCCCCCCCCcccccccChhhhhccccccc--CccccCcccCCCccccccccccCHHHHHHHHhcCCCCCCC
Q 003291 106 CRLSCSVCDNMEGPNDGSKRRARFRNIEQLKGHLFHRH--KLLMCSLCLEGRKVFICEQKLYTRAQLNQHINSGDSVVDG 183 (833)
Q Consensus 106 ~~~~C~~C~k~~~~~~g~~~~~~F~s~~~Lk~Hlr~~H--~~~~C~iC~k~~KvF~~E~~fyt~~~L~~H~r~h~~e~~g 183 (833)
..|.|.+|++ .|.-...|.+||+-|. +.|.|..|++ -|...-+|++|+++|++.
T Consensus 116 d~ftCrvCgK------------~F~lQRmlnrh~kch~~vkr~lct~cgk---------gfndtfdlkrh~rthtgv--- 171 (267)
T KOG3576|consen 116 DSFTCRVCGK------------KFGLQRMLNRHLKCHSDVKRHLCTFCGK---------GFNDTFDLKRHTRTHTGV--- 171 (267)
T ss_pred Ceeeeehhhh------------hhhHHHHHHHHhhhccHHHHHHHhhccC---------cccchhhhhhhhccccCc---
Confidence 4589999999 9999999999997543 4799999999 888899999999999987
Q ss_pred CcccCCCCCCCCCCCCCCCccCCchhHhhhcc---------------CCcccCCCCCCccCCcccccCChhHHHhhhcCC
Q 003291 184 TESERGGFMGHPMCEFCRTPFYGDNELYTHMS---------------TEHYTCHICQRQHPGQYEYYKNYDDLEIHFRRD 248 (833)
Q Consensus 184 ~~~~~~g~~~h~~C~~C~k~F~~~~~L~~Hmr---------------ekhf~C~iC~k~~~~~~~yF~~~~~L~~H~r~k 248 (833)
.+|.|..|++.|...-.|..|++ ++-|.|+.|+.+ -.....+..|.+..
T Consensus 172 ---------rpykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t-------~~~~e~~~~h~~~~ 235 (267)
T KOG3576|consen 172 ---------RPYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYT-------SERPEVYYLHLKLH 235 (267)
T ss_pred ---------cccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCC-------CCChhHHHHHHHhc
Confidence 79999999999999999999987 456999999987 33444455566543
Q ss_pred C
Q 003291 249 H 249 (833)
Q Consensus 249 H 249 (833)
|
T Consensus 236 h 236 (267)
T KOG3576|consen 236 H 236 (267)
T ss_pred C
Confidence 3
No 10
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=98.88 E-value=6.2e-10 Score=130.35 Aligned_cols=51 Identities=27% Similarity=0.603 Sum_probs=46.3
Q ss_pred ccCCCCCCccCCcccccCChhHHHhhhcC----CCccCChhhhccccccccCChHHHHHHHHHhhCCC
Q 003291 219 YTCHICQRQHPGQYEYYKNYDDLEIHFRR----DHFLCEDEACLAKKFVVFQSEAEMKRHNAIEHGGR 282 (833)
Q Consensus 219 f~C~iC~k~~~~~~~yF~~~~~L~~H~r~----kHy~C~~~~C~k~kfvvF~s~~eLk~H~~~hHg~~ 282 (833)
..|++|++. |....+|++|+|+ +||.|.+ |.+. |.+...||.||.+|+...
T Consensus 880 h~C~vCgk~-------FsSSsALqiH~rTHtg~KPF~C~f--C~~a----FttrgnLKvHMgtH~w~q 934 (958)
T KOG1074|consen 880 HVCNVCGKQ-------FSSSAALEIHMRTHTGPKPFFCHF--CEEA----FTTRGNLKVHMGTHMWVQ 934 (958)
T ss_pred hhhccchhc-------ccchHHHHHhhhcCCCCCCccchh--hhhh----hhhhhhhhhhhccccccC
Confidence 469999988 9999999999996 8999999 9986 999999999999988764
No 11
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=98.82 E-value=6.3e-10 Score=130.30 Aligned_cols=80 Identities=25% Similarity=0.544 Sum_probs=70.9
Q ss_pred CCCCCCCCCCccCCchhHhhhcc----CCcccCCCCCCccCCcccccCChhHHHhhhcC--------CCccCC---hhhh
Q 003291 193 GHPMCEFCRTPFYGDNELYTHMS----TEHYTCHICQRQHPGQYEYYKNYDDLEIHFRR--------DHFLCE---DEAC 257 (833)
Q Consensus 193 ~h~~C~~C~k~F~~~~~L~~Hmr----ekhf~C~iC~k~~~~~~~yF~~~~~L~~H~r~--------kHy~C~---~~~C 257 (833)
.+-+|-+|.+...-...|..|.| |+||+|.||++. |.++..|+.||.. -.|.|+ + |
T Consensus 604 dPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRA-------FtTkGNLkaH~~vHka~p~~R~q~ScP~~~i--c 674 (958)
T KOG1074|consen 604 DPNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRA-------FTTKGNLKAHMSVHKAKPPARVQFSCPSTFI--C 674 (958)
T ss_pred CccceeeeeecccchhhhhhhhhcccCcCccccccccch-------hccccchhhcccccccCccccccccCCchhh--h
Confidence 35689999999999999999999 999999999999 9999999999963 348999 7 9
Q ss_pred ccccccccCChHHHHHHHHHhhCCCCCh
Q 003291 258 LAKKFVVFQSEAEMKRHNAIEHGGRMSR 285 (833)
Q Consensus 258 ~k~kfvvF~s~~eLk~H~~~hHg~~~s~ 285 (833)
.++ |.+...|..|+++|.++..+.
T Consensus 675 ~~k----ftn~V~lpQhIriH~~~~~s~ 698 (958)
T KOG1074|consen 675 QKK----FTNAVTLPQHIRIHLGGQISN 698 (958)
T ss_pred ccc----ccccccccceEEeecCCCCCC
Confidence 887 999999999999998776554
No 12
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=98.67 E-value=5e-09 Score=120.92 Aligned_cols=99 Identities=24% Similarity=0.538 Sum_probs=64.2
Q ss_pred cccccCCCCCCCCCCCcccccccChhhhhcccccccC----ccccCcccCCCccccccccccCHHHHHHHHhcCCCCCCC
Q 003291 108 LSCSVCDNMEGPNDGSKRRARFRNIEQLKGHLFHRHK----LLMCSLCLEGRKVFICEQKLYTRAQLNQHINSGDSVVDG 183 (833)
Q Consensus 108 ~~C~~C~k~~~~~~g~~~~~~F~s~~~Lk~Hlr~~H~----~~~C~iC~k~~KvF~~E~~fyt~~~L~~H~r~h~~e~~g 183 (833)
..|+.|+. .+..+..|+.|++-.|. .|-|.+|.. .|..+.+|.+||..|....+.
T Consensus 211 ltcpycdr------------gykrltslkeHikyrhekne~nfsC~lCsy---------tFAyRtQLErhm~~hkpg~dq 269 (1007)
T KOG3623|consen 211 LTCPYCDR------------GYKRLTSLKEHIKYRHEKNEPNFSCMLCSY---------TFAYRTQLERHMQLHKPGGDQ 269 (1007)
T ss_pred hcchhHHH------------HHHHHHHHHHHHHHHHhhCCCCCcchhhhh---------hhhhHHHHHHHHHhhcCCCcc
Confidence 67999998 78889999999986664 588999998 999999999999998754221
Q ss_pred C-cccCCCCCCCCCCCCCCCccCCchhHhhhcc----CCcccCCCCCCc
Q 003291 184 T-ESERGGFMGHPMCEFCRTPFYGDNELYTHMS----TEHYTCHICQRQ 227 (833)
Q Consensus 184 ~-~~~~~g~~~h~~C~~C~k~F~~~~~L~~Hmr----ekhf~C~iC~k~ 227 (833)
. ....++..+.|+|..|+|.|.-+..|+.|+| ++||.|.-|.|+
T Consensus 270 a~sltqsa~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKR 318 (1007)
T KOG3623|consen 270 AISLTQSALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKR 318 (1007)
T ss_pred cccccchhhhccccccccchhhhhHHHHHhhheeecCCCCcCCcccccc
Confidence 0 1111122233444445444444444444444 444444444444
No 13
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=98.49 E-value=3.1e-08 Score=114.52 Aligned_cols=83 Identities=16% Similarity=0.409 Sum_probs=71.6
Q ss_pred ccccccCccccCcccCCCccccccccccCHHHHHHHHhcCCCCCCCCcccCCCCCCCCCCCCCCCccCCchhHhhhcc--
Q 003291 138 HLFHRHKLLMCSLCLEGRKVFICEQKLYTRAQLNQHINSGDSVVDGTESERGGFMGHPMCEFCRTPFYGDNELYTHMS-- 215 (833)
Q Consensus 138 Hlr~~H~~~~C~iC~k~~KvF~~E~~fyt~~~L~~H~r~h~~e~~g~~~~~~g~~~h~~C~~C~k~F~~~~~L~~Hmr-- 215 (833)
|.++..++|.|++|.+ .|.....|.+|.-.|+|. ++|+|.+|.|.|..+..|..|+|
T Consensus 887 ~~kte~gmyaCDqCDK---------~FqKqSSLaRHKYEHsGq------------RPyqC~iCkKAFKHKHHLtEHkRLH 945 (1007)
T KOG3623|consen 887 HAKTEDGMYACDQCDK---------AFQKQSSLARHKYEHSGQ------------RPYQCIICKKAFKHKHHLTEHKRLH 945 (1007)
T ss_pred cccCccccchHHHHHH---------HHHhhHHHHHhhhhhcCC------------CCcccchhhHhhhhhhhhhhhhhhc
Confidence 5556667899999998 888888999999999886 78899999999999999999998
Q ss_pred --CCcccCCCCCCccCCcccccCChhHHHhhhcCC
Q 003291 216 --TEHYTCHICQRQHPGQYEYYKNYDDLEIHFRRD 248 (833)
Q Consensus 216 --ekhf~C~iC~k~~~~~~~yF~~~~~L~~H~r~k 248 (833)
++||+|+-|+|+ |......-.||.-+
T Consensus 946 SGEKPfQCdKClKR-------FSHSGSYSQHMNHR 973 (1007)
T KOG3623|consen 946 SGEKPFQCDKCLKR-------FSHSGSYSQHMNHR 973 (1007)
T ss_pred cCCCcchhhhhhhh-------cccccchHhhhccc
Confidence 889999999998 88888888888753
No 14
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.46 E-value=3.2e-07 Score=107.02 Aligned_cols=140 Identities=16% Similarity=0.364 Sum_probs=97.5
Q ss_pred cccccccchHHHHHHHhhcccc---ccc--CCCCCCCCCCCcccccccChhhhhcccccccCccccCcccCCCccccccc
Q 003291 88 DTQAFFDDVDHYKMIKAMCRLS---CSV--CDNMEGPNDGSKRRARFRNIEQLKGHLFHRHKLLMCSLCLEGRKVFICEQ 162 (833)
Q Consensus 88 ~~~~~f~d~~~~k~i~~l~~~~---C~~--C~k~~~~~~g~~~~~~F~s~~~Lk~Hlr~~H~~~~C~iC~k~~KvF~~E~ 162 (833)
.+..+.. ...+.++...|.+. |+. |+. .| ....|..|. .|+.|++
T Consensus 412 NC~~~i~-l~~l~lHe~~C~r~~V~Cp~~~Cg~------------v~-~r~el~~H~-------~C~~Cgk--------- 461 (567)
T PLN03086 412 NCKHYIP-SRSIALHEAYCSRHNVVCPHDGCGI------------VL-RVEEAKNHV-------HCEKCGQ--------- 461 (567)
T ss_pred CCCCccc-hhHHHHHHhhCCCcceeCCcccccc------------ee-eccccccCc-------cCCCCCC---------
Confidence 3544444 23455666667654 664 554 56 455666664 7999987
Q ss_pred cccCHHHHHHHHhcCCCCCCCCcccCCCCCCCCCCCCCCCccCCchhHhhhcc----CCcccCCCCCCccCCc---cccc
Q 003291 163 KLYTRAQLNQHINSGDSVVDGTESERGGFMGHPMCEFCRTPFYGDNELYTHMS----TEHYTCHICQRQHPGQ---YEYY 235 (833)
Q Consensus 163 ~fyt~~~L~~H~r~h~~e~~g~~~~~~g~~~h~~C~~C~k~F~~~~~L~~Hmr----ekhf~C~iC~k~~~~~---~~yF 235 (833)
.| ....|..|++.|+ .++.|+ |++.| ....|..|++ ++++.|.+|++..... ..|=
T Consensus 462 ~f-~~s~LekH~~~~H--------------kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~ 524 (567)
T PLN03086 462 AF-QQGEMEKHMKVFH--------------EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVR 524 (567)
T ss_pred cc-chHHHHHHHHhcC--------------CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchh
Confidence 55 4688999999875 358999 99755 6789999987 7899999999971000 0011
Q ss_pred CChhHHHhhhcC---CCccCChhhhccccccccCChHHHHHHHHHhhCC
Q 003291 236 KNYDDLEIHFRR---DHFLCEDEACLAKKFVVFQSEAEMKRHNAIEHGG 281 (833)
Q Consensus 236 ~~~~~L~~H~r~---kHy~C~~~~C~k~kfvvF~s~~eLk~H~~~hHg~ 281 (833)
..+..|..|... +|+.|.. |++ .....+|..|+...|..
T Consensus 525 d~~s~Lt~HE~~CG~rt~~C~~--Cgk-----~Vrlrdm~~H~~~~h~~ 566 (567)
T PLN03086 525 DRLRGMSEHESICGSRTAPCDS--CGR-----SVMLKEMDIHQIAVHQK 566 (567)
T ss_pred hhhhhHHHHHHhcCCcceEccc--cCC-----eeeehhHHHHHHHhhcC
Confidence 134589999874 8999988 987 34566899999999864
No 15
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.44 E-value=1.6e-07 Score=109.53 Aligned_cols=97 Identities=24% Similarity=0.439 Sum_probs=79.2
Q ss_pred cccccCCCCCCCCCCCcccccccChhhhhcccccccCccccCcccCCCccccccccccCHHHHHHHHhcCCCCCCCCccc
Q 003291 108 LSCSVCDNMEGPNDGSKRRARFRNIEQLKGHLFHRHKLLMCSLCLEGRKVFICEQKLYTRAQLNQHINSGDSVVDGTESE 187 (833)
Q Consensus 108 ~~C~~C~k~~~~~~g~~~~~~F~s~~~Lk~Hlr~~H~~~~C~iC~k~~KvF~~E~~fyt~~~L~~H~r~h~~e~~g~~~~ 187 (833)
+.|+.|++ .|. ...|+.|++.+|.++.|. |+. .+ .+..|..|++.|.+.
T Consensus 454 ~~C~~Cgk------------~f~-~s~LekH~~~~Hkpv~Cp-Cg~---------~~-~R~~L~~H~~thCp~------- 502 (567)
T PLN03086 454 VHCEKCGQ------------AFQ-QGEMEKHMKVFHEPLQCP-CGV---------VL-EKEQMVQHQASTCPL------- 502 (567)
T ss_pred ccCCCCCC------------ccc-hHHHHHHHHhcCCCccCC-CCC---------Cc-chhHHHhhhhccCCC-------
Confidence 57999998 775 688999999989999999 986 43 678999999988776
Q ss_pred CCCCCCCCCCCCCCCccCC----------chhHhhhcc---CCcccCCCCCCccCCcccccCChhHHHhhhcCC
Q 003291 188 RGGFMGHPMCEFCRTPFYG----------DNELYTHMS---TEHYTCHICQRQHPGQYEYYKNYDDLEIHFRRD 248 (833)
Q Consensus 188 ~~g~~~h~~C~~C~k~F~~----------~~~L~~Hmr---ekhf~C~iC~k~~~~~~~yF~~~~~L~~H~r~k 248 (833)
+++.|.||++.|.. ...|..|+. .+|+.|+.|++. -...+|..|+..-
T Consensus 503 -----Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cgk~--------Vrlrdm~~H~~~~ 563 (567)
T PLN03086 503 -----RLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCGRS--------VMLKEMDIHQIAV 563 (567)
T ss_pred -----CceeCCCCCCccccCccccchhhhhhhHHHHHHhcCCcceEccccCCe--------eeehhHHHHHHHh
Confidence 68899999999942 247999988 899999999984 4456677887543
No 16
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.8e-08 Score=80.25 Aligned_cols=52 Identities=27% Similarity=0.534 Sum_probs=45.7
Q ss_pred CCCcccccccccceeeeecCCCcccccchHhHHHhHhCCCccccccccCceEE
Q 003291 1 MDDSCAVCADTLEWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTENNVVF 53 (833)
Q Consensus 1 m~~~C~IC~e~~~~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~~V~ 53 (833)
++++|.||+|......+..|+|+.+|+.|.+||..- -...|||||..+.-||
T Consensus 6 ~~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~-~~g~CPiCRapi~dvI 57 (62)
T KOG4172|consen 6 WSDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKA-LHGCCPICRAPIKDVI 57 (62)
T ss_pred cccceeeeccCcchHHHHHcchHHhHHHHHHHHHHc-cCCcCcchhhHHHHHH
Confidence 468999999999999999999999999999999765 5688999998876555
No 17
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.26 E-value=6.3e-07 Score=72.27 Aligned_cols=49 Identities=31% Similarity=0.712 Sum_probs=43.0
Q ss_pred CCcccccccccceeeeecCCCcccccchHhHHHhHhCCCccccccccCceE
Q 003291 2 DDSCAVCADTLEWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTENNVV 52 (833)
Q Consensus 2 ~~~C~IC~e~~~~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~~V 52 (833)
+..|.||.+......+.||+|..+|..|..++.. ....||+||+.+..|
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~--~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLK--RKKKCPICRQPIESV 50 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH--TTSBBTTTTBB-SEE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcc--cCCCCCcCChhhcCC
Confidence 4689999999999999999997799999999988 899999999998765
No 18
>PHA00733 hypothetical protein
Probab=98.26 E-value=6.7e-07 Score=86.37 Aligned_cols=53 Identities=25% Similarity=0.623 Sum_probs=40.7
Q ss_pred CCCCCCCCCCccCCchhHhhhcc--CCcccCCCCCCccCCcccccCChhHHHhhhcCCCccC
Q 003291 193 GHPMCEFCRTPFYGDNELYTHMS--TEHYTCHICQRQHPGQYEYYKNYDDLEIHFRRDHFLC 252 (833)
Q Consensus 193 ~h~~C~~C~k~F~~~~~L~~Hmr--ekhf~C~iC~k~~~~~~~yF~~~~~L~~H~r~kHy~C 252 (833)
.++.|+.|++.|.....|..|++ +.+|.|.+|++. |.....|..|+.++|-.|
T Consensus 72 kPy~C~~Cgk~Fss~s~L~~H~r~h~~~~~C~~CgK~-------F~~~~sL~~H~~~~h~~~ 126 (128)
T PHA00733 72 SPYVCPLCLMPFSSSVSLKQHIRYTEHSKVCPVCGKE-------FRNTDSTLDHVCKKHNIC 126 (128)
T ss_pred CCccCCCCCCcCCCHHHHHHHHhcCCcCccCCCCCCc-------cCCHHHHHHHHHHhcCcc
Confidence 46778888888888888888877 567788888777 777777777777777666
No 19
>PHA00733 hypothetical protein
Probab=98.05 E-value=3.7e-06 Score=81.29 Aligned_cols=76 Identities=18% Similarity=0.368 Sum_probs=66.8
Q ss_pred CCCCCCCCCCccCCchhHhhh------cc---CCcccCCCCCCccCCcccccCChhHHHhhhc--CCCccCChhhhcccc
Q 003291 193 GHPMCEFCRTPFYGDNELYTH------MS---TEHYTCHICQRQHPGQYEYYKNYDDLEIHFR--RDHFLCEDEACLAKK 261 (833)
Q Consensus 193 ~h~~C~~C~k~F~~~~~L~~H------mr---ekhf~C~iC~k~~~~~~~yF~~~~~L~~H~r--~kHy~C~~~~C~k~k 261 (833)
+...|.+|++.|+....|..| +. .++|.|.+|++. |.....|..|++ ..+|.|.. |++.
T Consensus 39 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~-------Fss~s~L~~H~r~h~~~~~C~~--CgK~- 108 (128)
T PHA00733 39 KRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMP-------FSSSVSLKQHIRYTEHSKVCPV--CGKE- 108 (128)
T ss_pred hhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCc-------CCCHHHHHHHHhcCCcCccCCC--CCCc-
Confidence 568999999999987776665 23 678999999998 999999999998 57899999 9985
Q ss_pred ccccCChHHHHHHHHHhhCC
Q 003291 262 FVVFQSEAEMKRHNAIEHGG 281 (833)
Q Consensus 262 fvvF~s~~eLk~H~~~hHg~ 281 (833)
|.....|+.|+...|+-
T Consensus 109 ---F~~~~sL~~H~~~~h~~ 125 (128)
T PHA00733 109 ---FRNTDSTLDHVCKKHNI 125 (128)
T ss_pred ---cCCHHHHHHHHHHhcCc
Confidence 99999999999999974
No 20
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=5.8e-06 Score=90.61 Aligned_cols=47 Identities=28% Similarity=0.587 Sum_probs=43.4
Q ss_pred CcccccccccceeeeecCCCcccccchHhHHHhHhCCCccccccccCce
Q 003291 3 DSCAVCADTLEWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTENNV 51 (833)
Q Consensus 3 ~~C~IC~e~~~~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~~ 51 (833)
.+|+||+.....+++.||.|.++|..|+--|| |..+.|||||+....
T Consensus 291 keCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr--~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 291 KECVICLSESRDTVVLPCRHLCLCSGCAKSLR--YQTNNCPICRQPIEE 337 (349)
T ss_pred CeeEEEecCCcceEEecchhhehhHhHHHHHH--HhhcCCCccccchHh
Confidence 47999999999999999999999999999999 678899999998754
No 21
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.66 E-value=2e-05 Score=85.20 Aligned_cols=126 Identities=22% Similarity=0.374 Sum_probs=90.4
Q ss_pred ccccccchHHHHHHHhhcccccccCCCCCC--CCCCCcccccccChhhhhccccccc------CccccCcccCCCccccc
Q 003291 89 TQAFFDDVDHYKMIKAMCRLSCSVCDNMEG--PNDGSKRRARFRNIEQLKGHLFHRH------KLLMCSLCLEGRKVFIC 160 (833)
Q Consensus 89 ~~~~f~d~~~~k~i~~l~~~~C~~C~k~~~--~~~g~~~~~~F~s~~~Lk~Hlr~~H------~~~~C~iC~k~~KvF~~ 160 (833)
++.||+-..|++. ..-.+-|.+|-..-. |++ ..-| +.+.|..|....- +.-+|..|..
T Consensus 163 C~~~k~lk~H~K~--~H~~~~C~~C~~nKk~F~~E----~~lF-~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~------- 228 (493)
T COG5236 163 CGSLKELKKHYKA--QHGFVLCSECIGNKKDFWNE----IRLF-RSSTLRDHKNGGLEEEGFKGHPLCIFCKI------- 228 (493)
T ss_pred hhhHHHHHHHHHh--hcCcEEhHhhhcCcccCccc----eeee-ecccccccccCCccccCcCCCchhhhccc-------
Confidence 4456665666653 244567998865211 221 1122 4567788864221 2357999988
Q ss_pred cccccCHHHHHHHHhcCCCCCCCCcccCCCCCCCCCCCCCCC-------ccCCchhHhhhccCCcccCCCCCCccCCccc
Q 003291 161 EQKLYTRAQLNQHINSGDSVVDGTESERGGFMGHPMCEFCRT-------PFYGDNELYTHMSTEHYTCHICQRQHPGQYE 233 (833)
Q Consensus 161 E~~fyt~~~L~~H~r~h~~e~~g~~~~~~g~~~h~~C~~C~k-------~F~~~~~L~~Hmrekhf~C~iC~k~~~~~~~ 233 (833)
.||...+|.+|++. .|..|.+|++ .|.+.+.|..|.+..||.|.+--.. .+++.
T Consensus 229 --~FYdDDEL~~HcR~----------------~HE~ChICD~v~p~~~QYFK~Y~~Le~HF~~~hy~ct~qtc~-~~k~~ 289 (493)
T COG5236 229 --YFYDDDELRRHCRL----------------RHEACHICDMVGPIRYQYFKSYEDLEAHFRNAHYCCTFQTCR-VGKCY 289 (493)
T ss_pred --eecChHHHHHHHHh----------------hhhhhhhhhccCccchhhhhCHHHHHHHhhcCceEEEEEEEe-cCcEE
Confidence 99999999999995 6788999984 6999999999999999999863333 46888
Q ss_pred ccCChhHHHhhhcC
Q 003291 234 YYKNYDDLEIHFRR 247 (833)
Q Consensus 234 yF~~~~~L~~H~r~ 247 (833)
+|.+...|..|+-.
T Consensus 290 vf~~~~el~~h~~~ 303 (493)
T COG5236 290 VFPYHTELLEHLTR 303 (493)
T ss_pred EeccHHHHHHHHHH
Confidence 99999999999864
No 22
>PHA02768 hypothetical protein; Provisional
Probab=97.43 E-value=3.9e-05 Score=63.19 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=34.6
Q ss_pred hcccccccCCCCCCCCCCCcccccccChhhhhcccccccCccccCcccC
Q 003291 105 MCRLSCSVCDNMEGPNDGSKRRARFRNIEQLKGHLFHRHKLLMCSLCLE 153 (833)
Q Consensus 105 l~~~~C~~C~k~~~~~~g~~~~~~F~s~~~Lk~Hlr~~H~~~~C~iC~k 153 (833)
++.|.|+.|++ .|.....|..|++.|++++.|..|++
T Consensus 3 ~~~y~C~~CGK------------~Fs~~~~L~~H~r~H~k~~kc~~C~k 39 (55)
T PHA02768 3 LLGYECPICGE------------IYIKRKSMITHLRKHNTNLKLSNCKR 39 (55)
T ss_pred ccccCcchhCC------------eeccHHHHHHHHHhcCCcccCCcccc
Confidence 67899999999 99999999999999778999999998
No 23
>PHA02768 hypothetical protein; Provisional
Probab=97.23 E-value=0.00021 Score=58.98 Aligned_cols=43 Identities=16% Similarity=0.297 Sum_probs=27.6
Q ss_pred cccCcccCCCccccccccccCHHHHHHHHhcCCCCCCCCcccCCCCCCCCCCCCCCCccCCchhHh
Q 003291 146 LMCSLCLEGRKVFICEQKLYTRAQLNQHINSGDSVVDGTESERGGFMGHPMCEFCRTPFYGDNELY 211 (833)
Q Consensus 146 ~~C~iC~k~~KvF~~E~~fyt~~~L~~H~r~h~~e~~g~~~~~~g~~~h~~C~~C~k~F~~~~~L~ 211 (833)
|.|+.|++ .|.....|..||++|+ .++.|..|++.|...++|.
T Consensus 6 y~C~~CGK---------~Fs~~~~L~~H~r~H~--------------k~~kc~~C~k~f~~~s~l~ 48 (55)
T PHA02768 6 YECPICGE---------IYIKRKSMITHLRKHN--------------TNLKLSNCKRISLRTGEYI 48 (55)
T ss_pred cCcchhCC---------eeccHHHHHHHHHhcC--------------CcccCCcccceecccceeE
Confidence 56777776 6666777777777665 1356667777666555543
No 24
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=97.02 E-value=0.00018 Score=80.12 Aligned_cols=151 Identities=20% Similarity=0.254 Sum_probs=99.5
Q ss_pred hcccccccCCCCCCCCCCCcccccccChhhhhccc--ccccCccccCcccCCCccccccccccCHHHHHHHHhcCCCCCC
Q 003291 105 MCRLSCSVCDNMEGPNDGSKRRARFRNIEQLKGHL--FHRHKLLMCSLCLEGRKVFICEQKLYTRAQLNQHINSGDSVVD 182 (833)
Q Consensus 105 l~~~~C~~C~k~~~~~~g~~~~~~F~s~~~Lk~Hl--r~~H~~~~C~iC~k~~KvF~~E~~fyt~~~L~~H~r~h~~e~~ 182 (833)
+-.|.|..|-. .|...-.|-+|. |..|-.|.|..|.+ .|.-..+|.-|+|+|.....
T Consensus 265 iGdyiCqLCK~------------kYeD~F~LAQHrC~RIV~vEYrCPEC~K---------VFsCPANLASHRRWHKPR~e 323 (500)
T KOG3993|consen 265 IGDYICQLCKE------------KYEDAFALAQHRCPRIVHVEYRCPECDK---------VFSCPANLASHRRWHKPRPE 323 (500)
T ss_pred HHHHHHHHHHH------------hhhhHHHHhhccCCeeEEeeecCCcccc---------cccCchhhhhhhcccCCchh
Confidence 45688999987 888888999995 46788999999998 77778999999999954211
Q ss_pred C-----C-------------cccCC---CCCCCCCCCCCCCccCCchhHhhhcc---------C------------Cccc
Q 003291 183 G-----T-------------ESERG---GFMGHPMCEFCRTPFYGDNELYTHMS---------T------------EHYT 220 (833)
Q Consensus 183 g-----~-------------~~~~~---g~~~h~~C~~C~k~F~~~~~L~~Hmr---------e------------khf~ 220 (833)
. . +.+++ ...+-|.|.+|+|.|.....|++|.- + --+.
T Consensus 324 aa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~ 403 (500)
T KOG3993|consen 324 AAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHF 403 (500)
T ss_pred hhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhccccccc
Confidence 0 0 11111 22356899999999999999999943 0 0033
Q ss_pred CCCCCCccC------Ccccc----------------cCChhHHHhhhc----CCCccCChhhhccccccccCChHHHHHH
Q 003291 221 CHICQRQHP------GQYEY----------------YKNYDDLEIHFR----RDHFLCEDEACLAKKFVVFQSEAEMKRH 274 (833)
Q Consensus 221 C~iC~k~~~------~~~~y----------------F~~~~~L~~H~r----~kHy~C~~~~C~k~kfvvF~s~~eLk~H 274 (833)
|+.|.-... ..-.| +.....-..|.+ ..-|.|.+ |... |.+.-.|.+|
T Consensus 404 ~~~~a~h~~a~~~~g~~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky--~~at----fyss~~ltrh 477 (500)
T KOG3993|consen 404 NQAVATHSSASDSHGDEVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKY--CPAT----FYSSPGLTRH 477 (500)
T ss_pred ccccccccccccccccceeeeeccccccCCCCCCCCcccCCCCCccccccchhhcccccc--chHh----hhcCcchHhH
Confidence 444433200 00011 111111111111 13488998 9875 9999999999
Q ss_pred HHHhhCCC
Q 003291 275 NAIEHGGR 282 (833)
Q Consensus 275 ~~~hHg~~ 282 (833)
+...|...
T Consensus 478 in~~Hpse 485 (500)
T KOG3993|consen 478 INKCHPSE 485 (500)
T ss_pred hhhcChHH
Confidence 99999754
No 25
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=96.93 E-value=0.00053 Score=61.74 Aligned_cols=74 Identities=24% Similarity=0.428 Sum_probs=23.2
Q ss_pred CCCCCCCccCCchhHhhhccCCcccCCCCCCccCCcccccCChhHHHhhhcC---CCccCChhhhccccccccCChHHHH
Q 003291 196 MCEFCRTPFYGDNELYTHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRR---DHFLCEDEACLAKKFVVFQSEAEMK 272 (833)
Q Consensus 196 ~C~~C~k~F~~~~~L~~Hmrekhf~C~iC~k~~~~~~~yF~~~~~L~~H~r~---kHy~C~~~~C~k~kfvvF~s~~eLk 272 (833)
+|.+|+..|.+.+.|..||...|-..-..... +.+...|..+.+. .++.|.. |.+. |.+...|+
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~-------l~~~~~~~~~~~~~~~~~~~C~~--C~~~----f~s~~~l~ 67 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKY-------LVDPNRLLNYLRKKVKESFRCPY--CNKT----FRSREALQ 67 (100)
T ss_dssp -------------------------------------------------------SSEEBSS--SS-E----ESSHHHHH
T ss_pred Cccccccccccccccccccccccccccccccc-------cccccccccccccccCCCCCCCc--cCCC----CcCHHHHH
Confidence 59999999999999999999877544332221 3344555555543 4699999 9985 99999999
Q ss_pred HHHHHhhCCC
Q 003291 273 RHNAIEHGGR 282 (833)
Q Consensus 273 ~H~~~hHg~~ 282 (833)
.||..++-..
T Consensus 68 ~Hm~~~~H~~ 77 (100)
T PF12756_consen 68 EHMRSKHHKK 77 (100)
T ss_dssp HHHHHTTTTC
T ss_pred HHHcCccCCC
Confidence 9999864433
No 26
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=96.79 E-value=0.00077 Score=52.80 Aligned_cols=41 Identities=27% Similarity=0.703 Sum_probs=32.2
Q ss_pred Cccccccccc---ceeeeecCCCcccccchHhHHHhHhCCCcccccc
Q 003291 3 DSCAVCADTL---EWVAYGGCGHREVCSTCVARLRFICQDRRCCICK 46 (833)
Q Consensus 3 ~~C~IC~e~~---~~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCr 46 (833)
|.|.||++++ +.+...+|+|. +|..|....... ...||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~--~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKR--NNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHH--SSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHh--CCcCCccC
Confidence 5899999998 35667789996 999998886544 57999997
No 27
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=96.69 E-value=0.0016 Score=49.70 Aligned_cols=43 Identities=28% Similarity=0.753 Sum_probs=34.5
Q ss_pred ccccccccc-ceeeeecCCCcccccchHhHHHhHhCCCcccccccc
Q 003291 4 SCAVCADTL-EWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTE 48 (833)
Q Consensus 4 ~C~IC~e~~-~~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte 48 (833)
.|.||.+.+ ..+.+.+|+|. +|..|..++... ....||+|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHh-CcCCCCCCCCc
Confidence 599999998 55566679996 999998876543 56789999875
No 28
>PHA02926 zinc finger-like protein; Provisional
Probab=96.65 E-value=0.0011 Score=68.86 Aligned_cols=54 Identities=22% Similarity=0.596 Sum_probs=40.9
Q ss_pred CCcccccccccc---------eeeeecCCCcccccchHhHHHhHhC----CCccccccccCceEEEec
Q 003291 2 DDSCAVCADTLE---------WVAYGGCGHREVCSTCVARLRFICQ----DRRCCICKTENNVVFVTK 56 (833)
Q Consensus 2 ~~~C~IC~e~~~---------~~a~~~C~H~~~C~~C~lRLR~L~~----~k~CpiCrte~~~V~~tk 56 (833)
|++|.||+|.+- +-.+.+|+|. +|..|.-+.|.--. .+.||+||+....|+-.+
T Consensus 170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSr 236 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNITMSK 236 (242)
T ss_pred CCCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeecccc
Confidence 678999999752 2345699995 99999998887421 456999999987665443
No 29
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=96.61 E-value=0.0013 Score=51.75 Aligned_cols=41 Identities=27% Similarity=0.854 Sum_probs=35.6
Q ss_pred ccccccccc---ceeeeecCCCcccccchHhHHHhHhCCCccccccc
Q 003291 4 SCAVCADTL---EWVAYGGCGHREVCSTCVARLRFICQDRRCCICKT 47 (833)
Q Consensus 4 ~C~IC~e~~---~~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrt 47 (833)
.|.||.+.. ....+++|+|. +|..|..++- .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHI-FCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCH-HHHHHHHhhc--CCCCCCcCCCC
Confidence 488999988 56788999996 9999999987 57899999985
No 30
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=96.51 E-value=0.00086 Score=47.01 Aligned_cols=25 Identities=20% Similarity=0.526 Sum_probs=21.2
Q ss_pred HHHHHHhcCCCCCCCCcccCCCCCCCCCCCCCCCccC
Q 003291 169 QLNQHINSGDSVVDGTESERGGFMGHPMCEFCRTPFY 205 (833)
Q Consensus 169 ~L~~H~r~h~~e~~g~~~~~~g~~~h~~C~~C~k~F~ 205 (833)
+|.+||+.|+++ ++|.|++|++.|.
T Consensus 1 ~l~~H~~~H~~~------------k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 1 NLRRHMRTHTGE------------KPYKCPYCGKSFS 25 (26)
T ss_dssp HHHHHHHHHSSS------------SSEEESSSSEEES
T ss_pred CHHHHhhhcCCC------------CCCCCCCCcCeeC
Confidence 488999999887 6789999998885
No 31
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.50 E-value=0.002 Score=49.50 Aligned_cols=40 Identities=25% Similarity=0.707 Sum_probs=36.3
Q ss_pred ccccccccceee-eecCCCcccccchHhHHHhHhCCCccccc
Q 003291 5 CAVCADTLEWVA-YGGCGHREVCSTCVARLRFICQDRRCCIC 45 (833)
Q Consensus 5 C~IC~e~~~~~a-~~~C~H~~~C~~C~lRLR~L~~~k~CpiC 45 (833)
|.||.+.+.... +.+|+|. +|..|..++..-.+...||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence 889999998888 8999997 999999999887788889988
No 32
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=96.49 E-value=0.0016 Score=49.82 Aligned_cols=38 Identities=29% Similarity=0.834 Sum_probs=30.8
Q ss_pred cccccccccee-eeecCCCcccccchHhHHHhHhCCCccccc
Q 003291 5 CAVCADTLEWV-AYGGCGHREVCSTCVARLRFICQDRRCCIC 45 (833)
Q Consensus 5 C~IC~e~~~~~-a~~~C~H~~~C~~C~lRLR~L~~~k~CpiC 45 (833)
|.||.+.+... .+.+|+|. +|..|..++... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHC--cCCCcCC
Confidence 88999998776 57999996 999999887554 6899998
No 33
>PHA00732 hypothetical protein
Probab=96.46 E-value=0.0016 Score=57.87 Aligned_cols=48 Identities=29% Similarity=0.504 Sum_probs=40.7
Q ss_pred ccccccCCCCCCCCCCCcccccccChhhhhcccccccCccccCcccCCCccccccccccCHHHHHHHHhcCC
Q 003291 107 RLSCSVCDNMEGPNDGSKRRARFRNIEQLKGHLFHRHKLLMCSLCLEGRKVFICEQKLYTRAQLNQHINSGD 178 (833)
Q Consensus 107 ~~~C~~C~k~~~~~~g~~~~~~F~s~~~Lk~Hlr~~H~~~~C~iC~k~~KvF~~E~~fyt~~~L~~H~r~h~ 178 (833)
+|.|..|++ .|.+...|+.|++.+|..+.|+.|++ .|. .|..|++...
T Consensus 1 py~C~~Cgk------------~F~s~s~Lk~H~r~~H~~~~C~~CgK---------sF~---~l~~H~~~~~ 48 (79)
T PHA00732 1 MFKCPICGF------------TTVTLFALKQHARRNHTLTKCPVCNK---------SYR---RLNQHFYSQY 48 (79)
T ss_pred CccCCCCCC------------ccCCHHHHHHHhhcccCCCccCCCCC---------EeC---ChhhhhcccC
Confidence 478999999 99999999999987777889999998 665 5889987543
No 34
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=96.42 E-value=0.00088 Score=60.32 Aligned_cols=73 Identities=21% Similarity=0.415 Sum_probs=19.1
Q ss_pred ccccCCCCCCCCCCCcccccccChhhhhcccccccCccccCcccCCCccccccccccCHHHHHHHHhcCCCCCCCCcccC
Q 003291 109 SCSVCDNMEGPNDGSKRRARFRNIEQLKGHLFHRHKLLMCSLCLEGRKVFICEQKLYTRAQLNQHINSGDSVVDGTESER 188 (833)
Q Consensus 109 ~C~~C~k~~~~~~g~~~~~~F~s~~~Lk~Hlr~~H~~~~C~iC~k~~KvF~~E~~fyt~~~L~~H~r~h~~e~~g~~~~~ 188 (833)
+|..|+. .|.+...|..||...|+.... ... .+.....|..+.+.-.
T Consensus 1 ~C~~C~~------------~f~~~~~l~~H~~~~H~~~~~--~~~---------~l~~~~~~~~~~~~~~---------- 47 (100)
T PF12756_consen 1 QCLFCDE------------SFSSVDDLLQHMKKKHGFDIP--DQK---------YLVDPNRLLNYLRKKV---------- 47 (100)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Ccccccc------------ccccccccccccccccccccc--ccc---------cccccccccccccccc----------
Confidence 4888988 899999999999888864322 111 2223333444433211
Q ss_pred CCCCCCCCCCCCCCccCCchhHhhhccCC
Q 003291 189 GGFMGHPMCEFCRTPFYGDNELYTHMSTE 217 (833)
Q Consensus 189 ~g~~~h~~C~~C~k~F~~~~~L~~Hmrek 217 (833)
...+.|.+|++.|.+...|..||+..
T Consensus 48 ---~~~~~C~~C~~~f~s~~~l~~Hm~~~ 73 (100)
T PF12756_consen 48 ---KESFRCPYCNKTFRSREALQEHMRSK 73 (100)
T ss_dssp ----SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred ---CCCCCCCccCCCCcCHHHHHHHHcCc
Confidence 13578888888888888888888843
No 35
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=96.39 E-value=0.00075 Score=75.33 Aligned_cols=78 Identities=23% Similarity=0.545 Sum_probs=67.6
Q ss_pred CCCCCCCCCCccCCchhHhhhcc----CCcccCCCCCCccCCcccccCChhHHHhhhcC------------C--------
Q 003291 193 GHPMCEFCRTPFYGDNELYTHMS----TEHYTCHICQRQHPGQYEYYKNYDDLEIHFRR------------D-------- 248 (833)
Q Consensus 193 ~h~~C~~C~k~F~~~~~L~~Hmr----ekhf~C~iC~k~~~~~~~yF~~~~~L~~H~r~------------k-------- 248 (833)
+.|+|.+|...|-|.-.|.+|.= ..-|+|..|+|. |.--.+|-.|.|. .
T Consensus 266 GdyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KV-------FsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~ 338 (500)
T KOG3993|consen 266 GDYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKV-------FSCPANLASHRRWHKPRPEAAKAGSPPPKQAVET 338 (500)
T ss_pred HHHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCccccc-------ccCchhhhhhhcccCCchhhhhcCCCChhhhhhh
Confidence 56899999999999999999964 344999999998 9999999999873 0
Q ss_pred -----------------CccCChhhhccccccccCChHHHHHHHHHhhCCCC
Q 003291 249 -----------------HFLCEDEACLAKKFVVFQSEAEMKRHNAIEHGGRM 283 (833)
Q Consensus 249 -----------------Hy~C~~~~C~k~kfvvF~s~~eLk~H~~~hHg~~~ 283 (833)
-|.|.+ |+++ |..+..|+.|+.+||....
T Consensus 339 rae~~ea~rsg~dss~gi~~C~~--C~Kk----FrRqAYLrKHqlthq~~~~ 384 (500)
T KOG3993|consen 339 RAEVQEAERSGDDSSSGIFSCHT--CGKK----FRRQAYLRKHQLTHQRAPL 384 (500)
T ss_pred hhhhhhccccCCcccCceeecHH--hhhh----hHHHHHHHHhHHhhhcccc
Confidence 289999 9987 9999999999999997653
No 36
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=96.34 E-value=0.0024 Score=65.61 Aligned_cols=46 Identities=24% Similarity=0.713 Sum_probs=38.0
Q ss_pred cccccccccceeeeecCCCcccccchHhHHHhH--------------hCCCccccccccCc
Q 003291 4 SCAVCADTLEWVAYGGCGHREVCSTCVARLRFI--------------CQDRRCCICKTENN 50 (833)
Q Consensus 4 ~C~IC~e~~~~~a~~~C~H~~~C~~C~lRLR~L--------------~~~k~CpiCrte~~ 50 (833)
.|.||.+.+....+++|+|. .|+.|..+.... -+...||+|+..+.
T Consensus 20 ~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 20 DCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 69999999999999999995 999999864322 13468999999874
No 37
>PHA00732 hypothetical protein
Probab=96.15 E-value=0.0042 Score=55.33 Aligned_cols=43 Identities=23% Similarity=0.461 Sum_probs=35.5
Q ss_pred CCCCCCCCccCCchhHhhhcc--CCcccCCCCCCccCCcccccCChhHHHhhhcC
Q 003291 195 PMCEFCRTPFYGDNELYTHMS--TEHYTCHICQRQHPGQYEYYKNYDDLEIHFRR 247 (833)
Q Consensus 195 ~~C~~C~k~F~~~~~L~~Hmr--ekhf~C~iC~k~~~~~~~yF~~~~~L~~H~r~ 247 (833)
+.|..|++.|.+...|..|++ ...+.|.+|++. |. .|..|+..
T Consensus 2 y~C~~Cgk~F~s~s~Lk~H~r~~H~~~~C~~CgKs-------F~---~l~~H~~~ 46 (79)
T PHA00732 2 FKCPICGFTTVTLFALKQHARRNHTLTKCPVCNKS-------YR---RLNQHFYS 46 (79)
T ss_pred ccCCCCCCccCCHHHHHHHhhcccCCCccCCCCCE-------eC---Chhhhhcc
Confidence 679999999999999999987 356789999987 65 58888865
No 38
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.0047 Score=64.67 Aligned_cols=46 Identities=26% Similarity=0.598 Sum_probs=40.4
Q ss_pred cccccccccceeeeecCCCcccccchHhHHHhHh-CCCccccccccCc
Q 003291 4 SCAVCADTLEWVAYGGCGHREVCSTCVARLRFIC-QDRRCCICKTENN 50 (833)
Q Consensus 4 ~C~IC~e~~~~~a~~~C~H~~~C~~C~lRLR~L~-~~k~CpiCrte~~ 50 (833)
.|-||.|..+.-.++.|+| ..||-|..+.-..+ +.+.||+||.+..
T Consensus 49 dCNICLd~akdPVvTlCGH-LFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 49 DCNICLDLAKDPVVTLCGH-LFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred eeeeeccccCCCEEeeccc-ceehHHHHHHHhhcCCCeeCCccccccc
Confidence 5999999999999999999 59999998876665 4788899999885
No 39
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=95.93 E-value=0.0039 Score=51.27 Aligned_cols=23 Identities=26% Similarity=0.639 Sum_probs=16.0
Q ss_pred CCCCCCCCccCCchhHhhhccCCc
Q 003291 195 PMCEFCRTPFYGDNELYTHMSTEH 218 (833)
Q Consensus 195 ~~C~~C~k~F~~~~~L~~Hmrekh 218 (833)
|.|++|++ .++...|..|+.+.|
T Consensus 3 f~CP~C~~-~~~~~~L~~H~~~~H 25 (54)
T PF05605_consen 3 FTCPYCGK-GFSESSLVEHCEDEH 25 (54)
T ss_pred cCCCCCCC-ccCHHHHHHHHHhHC
Confidence 67888888 566777777776433
No 40
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.0034 Score=68.69 Aligned_cols=51 Identities=27% Similarity=0.679 Sum_probs=43.1
Q ss_pred CCcccccccccceeeeecCCCcccccchHhHHHhHhCCCccccccccCceEEEe
Q 003291 2 DDSCAVCADTLEWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTENNVVFVT 55 (833)
Q Consensus 2 ~~~C~IC~e~~~~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~~V~~t 55 (833)
|+.|.|||.......+.||+|+ -|+.|..+ .|+|.+.|-+|++....|+.-
T Consensus 422 d~lCpICyA~pi~Avf~PC~H~-SC~~CI~q--HlmN~k~CFfCktTv~~~~ld 472 (489)
T KOG4692|consen 422 DNLCPICYAGPINAVFAPCSHR-SCYGCITQ--HLMNCKRCFFCKTTVIDVILD 472 (489)
T ss_pred cccCcceecccchhhccCCCCc-hHHHHHHH--HHhcCCeeeEecceeeehhcc
Confidence 5689999998888889999998 89999865 578999999999987655543
No 41
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.55 E-value=0.0043 Score=68.85 Aligned_cols=51 Identities=27% Similarity=0.649 Sum_probs=43.3
Q ss_pred cccccccccceeeeecCCCcccccchHhHHHhHhCCCccccccccCc---eEEEe
Q 003291 4 SCAVCADTLEWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTENN---VVFVT 55 (833)
Q Consensus 4 ~C~IC~e~~~~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~---~V~~t 55 (833)
.|-||+|.-..+.+-||+|- +|..|..--..-.+-..||+||-|+. .|+|-
T Consensus 371 LCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte~viid 424 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVIID 424 (563)
T ss_pred HHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEeccccceeee
Confidence 69999999999999999994 99999887766666799999999984 45554
No 42
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.44 E-value=0.0091 Score=65.53 Aligned_cols=48 Identities=33% Similarity=0.676 Sum_probs=35.7
Q ss_pred CCC-ccccccccc----ce-eeeecCCCcccccchHhHHHhHhCCCccccccccCc
Q 003291 1 MDD-SCAVCADTL----EW-VAYGGCGHREVCSTCVARLRFICQDRRCCICKTENN 50 (833)
Q Consensus 1 m~~-~C~IC~e~~----~~-~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~ 50 (833)
||+ .|.||.... .. +-+.+|+|+ +|..|+.++-. .....||.|+..+.
T Consensus 1 md~~~CP~Ck~~~y~np~~kl~i~~CGH~-~C~sCv~~l~~-~~~~~CP~C~~~lr 54 (309)
T TIGR00570 1 MDDQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFV-RGSGSCPECDTPLR 54 (309)
T ss_pred CCCCCCCcCCCCCccCcccccccCCCCCc-ccHHHHHHHhc-CCCCCCCCCCCccc
Confidence 777 699999842 21 123489997 99999999843 35679999987764
No 43
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=95.38 E-value=0.004 Score=64.96 Aligned_cols=34 Identities=32% Similarity=0.936 Sum_probs=31.8
Q ss_pred CCCCCCCCCccCCchhHhhhccCCcccCCCCCCc
Q 003291 194 HPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQ 227 (833)
Q Consensus 194 h~~C~~C~k~F~~~~~L~~Hmrekhf~C~iC~k~ 227 (833)
.+.|=+|++.|-++..|..|.+.+||+|+||.+.
T Consensus 10 kpwcwycnrefddekiliqhqkakhfkchichkk 43 (341)
T KOG2893|consen 10 KPWCWYCNREFDDEKILIQHQKAKHFKCHICHKK 43 (341)
T ss_pred Cceeeecccccchhhhhhhhhhhccceeeeehhh
Confidence 4689999999999999999999999999999986
No 44
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=95.36 E-value=0.016 Score=47.66 Aligned_cols=47 Identities=21% Similarity=0.555 Sum_probs=37.2
Q ss_pred cccCCCCCCccCCcccccCChhHHHhhhcCC------CccCChhhhccccccccCChHHHHHHHHHhhC
Q 003291 218 HYTCHICQRQHPGQYEYYKNYDDLEIHFRRD------HFLCEDEACLAKKFVVFQSEAEMKRHNAIEHG 280 (833)
Q Consensus 218 hf~C~iC~k~~~~~~~yF~~~~~L~~H~r~k------Hy~C~~~~C~k~kfvvF~s~~eLk~H~~~hHg 280 (833)
-|.|.+|++. | +...|..|.... .+.|+. |... +. .+|..|+..+|+
T Consensus 2 ~f~CP~C~~~-------~-~~~~L~~H~~~~H~~~~~~v~CPi--C~~~----~~--~~l~~Hl~~~H~ 54 (54)
T PF05605_consen 2 SFTCPYCGKG-------F-SESSLVEHCEDEHRSESKNVVCPI--CSSR----VT--DNLIRHLNSQHR 54 (54)
T ss_pred CcCCCCCCCc-------c-CHHHHHHHHHhHCcCCCCCccCCC--chhh----hh--hHHHHHHHHhcC
Confidence 4899999993 4 467899998763 489999 9864 44 499999999985
No 45
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=95.30 E-value=0.014 Score=42.65 Aligned_cols=39 Identities=28% Similarity=0.783 Sum_probs=32.7
Q ss_pred ccccccccceeeeecCCCcccccchHhHHHhHhCCCccccc
Q 003291 5 CAVCADTLEWVAYGGCGHREVCSTCVARLRFICQDRRCCIC 45 (833)
Q Consensus 5 C~IC~e~~~~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiC 45 (833)
|.||.+......+.+|+|. +|..|..++.. .....||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCCh-HHHHHHHHHHH-hCcCCCCCC
Confidence 8899999888889999996 99999887654 356679987
No 46
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.0099 Score=64.31 Aligned_cols=55 Identities=16% Similarity=0.459 Sum_probs=41.8
Q ss_pred CCCcccccccccceeeeecCCCcccccchHhHHHhHhCCCccccccccCce-EEEecc
Q 003291 1 MDDSCAVCADTLEWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTENNV-VFVTKA 57 (833)
Q Consensus 1 m~~~C~IC~e~~~~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~~-V~~tk~ 57 (833)
|+++|.||......-...+|+|. +|+.|.-=- .-.+.+.|++||.+++. ||+...
T Consensus 6 ~~~eC~IC~nt~n~Pv~l~C~Hk-FCyiCiKGs-y~ndk~~CavCR~pids~i~~~ps 61 (324)
T KOG0824|consen 6 KKKECLICYNTGNCPVNLYCFHK-FCYICIKGS-YKNDKKTCAVCRFPIDSTIDFEPS 61 (324)
T ss_pred cCCcceeeeccCCcCccccccch-hhhhhhcch-hhcCCCCCceecCCCCcchhcchh
Confidence 67899999999888888999996 899986322 22245669999999985 444443
No 47
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.014 Score=67.15 Aligned_cols=47 Identities=23% Similarity=0.607 Sum_probs=40.8
Q ss_pred CCcccccccccceeeeecCCCcccccchHhHHHhHh---CCCccccccccC
Q 003291 2 DDSCAVCADTLEWVAYGGCGHREVCSTCVARLRFIC---QDRRCCICKTEN 49 (833)
Q Consensus 2 ~~~C~IC~e~~~~~a~~~C~H~~~C~~C~lRLR~L~---~~k~CpiCrte~ 49 (833)
+..|.||.++......+.|||. .|.-|.|.+.-.- .-..||+|+..+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I 235 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTI 235 (513)
T ss_pred CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhc
Confidence 4679999999999999999995 9999999997654 358999999765
No 48
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.70 E-value=0.017 Score=65.76 Aligned_cols=44 Identities=27% Similarity=0.856 Sum_probs=37.0
Q ss_pred cccccccccceeeeecCCCcccccchHhHHHhHhCCCccccccccCc
Q 003291 4 SCAVCADTLEWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTENN 50 (833)
Q Consensus 4 ~C~IC~e~~~~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~ 50 (833)
.|.||.+.+..-.+.+|+|. +|..|..+. +-....||+|+....
T Consensus 28 ~C~IC~d~~~~PvitpCgH~-FCs~CI~~~--l~~~~~CP~Cr~~~~ 71 (397)
T TIGR00599 28 RCHICKDFFDVPVLTSCSHT-FCSLCIRRC--LSNQPKCPLCRAEDQ 71 (397)
T ss_pred CCCcCchhhhCccCCCCCCc-hhHHHHHHH--HhCCCCCCCCCCccc
Confidence 69999999988888999996 999998764 445668999999864
No 49
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=94.52 E-value=0.018 Score=61.78 Aligned_cols=44 Identities=25% Similarity=0.718 Sum_probs=37.0
Q ss_pred cccccccccceeeeecCCCcccccchHhHHHhHhCCCccccccccCc
Q 003291 4 SCAVCADTLEWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTENN 50 (833)
Q Consensus 4 ~C~IC~e~~~~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~ 50 (833)
.|.||-+-+.+-.+++|+|. +|+.|.-+ .|-++..||+|+.+.-
T Consensus 27 rC~IC~~~i~ip~~TtCgHt-FCslCIR~--hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 27 RCRICDCRISIPCETTCGHT-FCSLCIRR--HLGTQPFCPVCREDPC 70 (391)
T ss_pred Hhhhhhheeecceecccccc-hhHHHHHH--HhcCCCCCccccccHH
Confidence 59999999999999999996 77777643 4667999999998753
No 50
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=94.40 E-value=0.027 Score=44.03 Aligned_cols=40 Identities=30% Similarity=0.660 Sum_probs=29.9
Q ss_pred ccccccccceeeeecCCCcccccchHhHHHhHhCC--Cccccc
Q 003291 5 CAVCADTLEWVAYGGCGHREVCSTCVARLRFICQD--RRCCIC 45 (833)
Q Consensus 5 C~IC~e~~~~~a~~~C~H~~~C~~C~lRLR~L~~~--k~CpiC 45 (833)
|.||.+-+..-...+|+|. +|..|..++..-... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence 8899999999899999996 999999888765444 479887
No 51
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.36 E-value=0.021 Score=63.83 Aligned_cols=51 Identities=25% Similarity=0.745 Sum_probs=42.8
Q ss_pred CCcccccccccceee-----e---ecCCCcccccchHhHHHhHhC-----CCccccccccCceEE
Q 003291 2 DDSCAVCADTLEWVA-----Y---GGCGHREVCSTCVARLRFICQ-----DRRCCICKTENNVVF 53 (833)
Q Consensus 2 ~~~C~IC~e~~~~~a-----~---~~C~H~~~C~~C~lRLR~L~~-----~k~CpiCrte~~~V~ 53 (833)
+.+|.||+|.+...+ . .+|+|. +|..|.-.-|-.-. .+.||+||.....|+
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 678999999987666 4 579995 99999998886655 599999999988776
No 52
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=94.21 E-value=0.042 Score=48.11 Aligned_cols=42 Identities=33% Similarity=0.901 Sum_probs=31.5
Q ss_pred CCccccccccc-------------ceeeeecCCCcccccchHhHHHhHhCCCcccccc
Q 003291 2 DDSCAVCADTL-------------EWVAYGGCGHREVCSTCVARLRFICQDRRCCICK 46 (833)
Q Consensus 2 ~~~C~IC~e~~-------------~~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCr 46 (833)
++.|.||.+++ -.++.++|+|. ....|..+. |.....||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~-FH~~Ci~~W--l~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHI-FHFHCISQW--LKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEE-EEHHHHHHH--HTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCC-EEHHHHHHH--HhcCCcCCCCC
Confidence 57899999998 34466899995 888888544 45566999997
No 53
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.97 E-value=0.017 Score=59.42 Aligned_cols=112 Identities=21% Similarity=0.400 Sum_probs=80.4
Q ss_pred ccccccccCHHHHHHHHhcCCCCCCCCcccCCCCCCCCCCCC--CCCccCCchhHhhhccCCc-ccCCCCCCccCCcccc
Q 003291 158 FICEQKLYTRAQLNQHINSGDSVVDGTESERGGFMGHPMCEF--CRTPFYGDNELYTHMSTEH-YTCHICQRQHPGQYEY 234 (833)
Q Consensus 158 F~~E~~fyt~~~L~~H~r~h~~e~~g~~~~~~g~~~h~~C~~--C~k~F~~~~~L~~Hmrekh-f~C~iC~k~~~~~~~y 234 (833)
|..|+.|+...+.++|+-..+--.|=...........+.|.. |-..|-.-+....|....| -.|.+|.+.
T Consensus 43 fp~~~pFf~~G~v~r~l~~~~V~~d~~d~~~~~~~~~~~cqvagc~~~~d~lD~~E~hY~~~h~~sCs~C~r~------- 115 (253)
T KOG4173|consen 43 FPREHPFFEDGDVQRHLYLQDVIMDVADVPEKPRVPAFACQVAGCCQVFDALDDYEHHYHTLHGNSCSFCKRA------- 115 (253)
T ss_pred CCCcCcchhcccHHHHHhHhhheeeccccccccccccccccccchHHHHhhhhhHHHhhhhcccchhHHHHHh-------
Confidence 788889998888888875432211100111111123466876 6678887777777766444 489999998
Q ss_pred cCChhHHHhhhcCC--------------CccCChhhhccccccccCChHHHHHHHHHhhC
Q 003291 235 YKNYDDLEIHFRRD--------------HFLCEDEACLAKKFVVFQSEAEMKRHNAIEHG 280 (833)
Q Consensus 235 F~~~~~L~~H~r~k--------------Hy~C~~~~C~k~kfvvF~s~~eLk~H~~~hHg 280 (833)
|.+-.-|..|+-+. -|.|-..+|..+ |.+..+-+.|+...|.
T Consensus 116 ~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~K----FkT~r~RkdH~I~~Hk 171 (253)
T KOG4173|consen 116 FPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEK----FKTSRDRKDHMIRMHK 171 (253)
T ss_pred CCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhh----hhhhhhhhhHHHHhcc
Confidence 88888888888753 399999999987 9999999999988875
No 54
>PHA00616 hypothetical protein
Probab=93.96 E-value=0.034 Score=44.05 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=25.3
Q ss_pred CccCChhhhccccccccCChHHHHHHHHHhhCCC
Q 003291 249 HFLCEDEACLAKKFVVFQSEAEMKRHNAIEHGGR 282 (833)
Q Consensus 249 Hy~C~~~~C~k~kfvvF~s~~eLk~H~~~hHg~~ 282 (833)
||.|+. |++. |....+|.+|++.|||..
T Consensus 1 pYqC~~--CG~~----F~~~s~l~~H~r~~hg~~ 28 (44)
T PHA00616 1 MYQCLR--CGGI----FRKKKEVIEHLLSVHKQN 28 (44)
T ss_pred CCccch--hhHH----HhhHHHHHHHHHHhcCCC
Confidence 688998 9985 999999999999999985
No 55
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=93.87 E-value=0.022 Score=61.91 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=19.4
Q ss_pred CCCCCCC--CCCccCCchhHhhhcc
Q 003291 193 GHPMCEF--CRTPFYGDNELYTHMS 215 (833)
Q Consensus 193 ~h~~C~~--C~k~F~~~~~L~~Hmr 215 (833)
++|.|++ |.|.|.....|+-||.
T Consensus 348 KpykCpV~gC~K~YknqnGLKYH~l 372 (423)
T COG5189 348 KPYKCPVEGCNKKYKNQNGLKYHML 372 (423)
T ss_pred ceecCCCCCchhhhccccchhhhhh
Confidence 5788876 8899998888888886
No 56
>PHA00616 hypothetical protein
Probab=93.70 E-value=0.03 Score=44.35 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=20.2
Q ss_pred ccccCcccCCCccccccccccCHHHHHHHHhcCCCC
Q 003291 145 LLMCSLCLEGRKVFICEQKLYTRAQLNQHINSGDSV 180 (833)
Q Consensus 145 ~~~C~iC~k~~KvF~~E~~fyt~~~L~~H~r~h~~e 180 (833)
+|.|..|++ .|....+|.+|++.|+++
T Consensus 1 pYqC~~CG~---------~F~~~s~l~~H~r~~hg~ 27 (44)
T PHA00616 1 MYQCLRCGG---------IFRKKKEVIEHLLSVHKQ 27 (44)
T ss_pred CCccchhhH---------HHhhHHHHHHHHHHhcCC
Confidence 367777777 777777788888777765
No 57
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=93.44 E-value=0.023 Score=37.77 Aligned_cols=24 Identities=29% Similarity=0.825 Sum_probs=14.4
Q ss_pred cccccCCCCCCCCCCCcccccccChhhhhccccccc
Q 003291 108 LSCSVCDNMEGPNDGSKRRARFRNIEQLKGHLFHRH 143 (833)
Q Consensus 108 ~~C~~C~k~~~~~~g~~~~~~F~s~~~Lk~Hlr~~H 143 (833)
|.|++|++ .|.+...|+.|++.+|
T Consensus 1 ~~C~~C~~------------~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGK------------SFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-------------EESSHHHHHHHHHHHS
T ss_pred CCCcCCCC------------cCCcHHHHHHHHHhhC
Confidence 45677766 6777777777766544
No 58
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=93.07 E-value=0.098 Score=43.56 Aligned_cols=45 Identities=4% Similarity=0.006 Sum_probs=38.4
Q ss_pred CcccccccccceeeeecCCCcccccchHhHHHhHhCCCccccccccCc
Q 003291 3 DSCAVCADTLEWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTENN 50 (833)
Q Consensus 3 ~~C~IC~e~~~~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~ 50 (833)
-.|.||.+.++.-.+.+|+|. +|..|...+-. +...||+|++.+.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~--~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQT-YERRAIEKWLL--SHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCE-EeHHHHHHHHH--HCCCCCCCcCCCC
Confidence 369999999999899999996 99999998754 3778999998763
No 59
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=92.85 E-value=0.076 Score=35.22 Aligned_cols=24 Identities=33% Similarity=0.722 Sum_probs=16.2
Q ss_pred ccCChhhhccccccccCChHHHHHHHHHhh
Q 003291 250 FLCEDEACLAKKFVVFQSEAEMKRHNAIEH 279 (833)
Q Consensus 250 y~C~~~~C~k~kfvvF~s~~eLk~H~~~hH 279 (833)
|.|+. |+.. |.+..+|+.|+.++|
T Consensus 1 ~~C~~--C~~~----~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPI--CGKS----FRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SS--TS-E----ESSHHHHHHHHHHHS
T ss_pred CCCcC--CCCc----CCcHHHHHHHHHhhC
Confidence 56777 7764 788888888887776
No 60
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=92.84 E-value=0.024 Score=38.02 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=8.7
Q ss_pred cccChhhhhccccc
Q 003291 128 RFRNIEQLKGHLFH 141 (833)
Q Consensus 128 ~F~s~~~Lk~Hlr~ 141 (833)
.|.+...|+.|++.
T Consensus 9 ~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 9 SFSSKSNLKRHMRR 22 (23)
T ss_dssp EESSHHHHHHHHHH
T ss_pred ccCCHHHHHHHHhH
Confidence 66666666666653
No 61
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=92.27 E-value=0.052 Score=38.05 Aligned_cols=12 Identities=25% Similarity=0.861 Sum_probs=8.2
Q ss_pred CCcccCCCCCCc
Q 003291 216 TEHYTCHICQRQ 227 (833)
Q Consensus 216 ekhf~C~iC~k~ 227 (833)
+++|.|.+|++.
T Consensus 12 ~k~~~C~~C~k~ 23 (26)
T PF13465_consen 12 EKPYKCPYCGKS 23 (26)
T ss_dssp SSSEEESSSSEE
T ss_pred CCCCCCCCCcCe
Confidence 666777777665
No 62
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=91.76 E-value=0.11 Score=34.71 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=15.4
Q ss_pred ccCChhhhccccccccCChHHHHHHHHH
Q 003291 250 FLCEDEACLAKKFVVFQSEAEMKRHNAI 277 (833)
Q Consensus 250 y~C~~~~C~k~kfvvF~s~~eLk~H~~~ 277 (833)
|.|+. |++. |.+...|+.|++.
T Consensus 1 y~C~~--C~~~----f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPI--CGKS----FSSKSNLKRHMRR 22 (23)
T ss_dssp EEETT--TTEE----ESSHHHHHHHHHH
T ss_pred CCCCC--CCCc----cCCHHHHHHHHhH
Confidence 56666 7664 7777777777766
No 63
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=91.47 E-value=0.05 Score=59.19 Aligned_cols=48 Identities=27% Similarity=0.699 Sum_probs=39.5
Q ss_pred CCcccCCC--CCCccCCcccccCChhHHHhhhcC-----------------------CCccCChhhhccccccccCChHH
Q 003291 216 TEHYTCHI--CQRQHPGQYEYYKNYDDLEIHFRR-----------------------DHFLCEDEACLAKKFVVFQSEAE 270 (833)
Q Consensus 216 ekhf~C~i--C~k~~~~~~~yF~~~~~L~~H~r~-----------------------kHy~C~~~~C~k~kfvvF~s~~e 270 (833)
++||+|.+ |+|. |++...|+-|+.. +||.|+. |.++ |.+-.-
T Consensus 347 ~KpykCpV~gC~K~-------YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCev--C~KR----YKNlNG 413 (423)
T COG5189 347 GKPYKCPVEGCNKK-------YKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEV--CDKR----YKNLNG 413 (423)
T ss_pred CceecCCCCCchhh-------hccccchhhhhhccccCcccCCCCCccccccccccCCceeccc--cchh----hccCcc
Confidence 59999997 8887 7777777766541 7899999 9987 999999
Q ss_pred HHHHHH
Q 003291 271 MKRHNA 276 (833)
Q Consensus 271 Lk~H~~ 276 (833)
||.|..
T Consensus 414 LKYHr~ 419 (423)
T COG5189 414 LKYHRK 419 (423)
T ss_pred ceeccc
Confidence 999874
No 64
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.12 E-value=0.13 Score=55.17 Aligned_cols=50 Identities=28% Similarity=0.604 Sum_probs=40.4
Q ss_pred CCccccccccc-ceeeeecCCCcccccchHhHHHhHhCCCccccccccCceE
Q 003291 2 DDSCAVCADTL-EWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTENNVV 52 (833)
Q Consensus 2 ~~~C~IC~e~~-~~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~~V 52 (833)
+-+|.+|-++. -....++|+|. -||.|...-+...-...||-|-+....+
T Consensus 239 ~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~~l 289 (298)
T KOG2879|consen 239 DTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVEPL 289 (298)
T ss_pred CceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCcch
Confidence 34799999975 45667889996 8999998887766678999999887543
No 65
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.01 E-value=0.085 Score=55.56 Aligned_cols=40 Identities=25% Similarity=0.724 Sum_probs=36.6
Q ss_pred cccccccccceeeeecCCCcccccchHhHHHhHhCCCcccccc
Q 003291 4 SCAVCADTLEWVAYGGCGHREVCSTCVARLRFICQDRRCCICK 46 (833)
Q Consensus 4 ~C~IC~e~~~~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCr 46 (833)
.|.||.+.+..-.+.+|+|. +|..|.-.+.. ....||.|+
T Consensus 15 ~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~--~~~~Cp~cr 54 (386)
T KOG2177|consen 15 TCPICLEYFREPVLLPCGHN-FCRACLTRSWE--GPLSCPVCR 54 (386)
T ss_pred cChhhHHHhhcCccccccch-HhHHHHHHhcC--CCcCCcccC
Confidence 69999999988899999996 99999999988 668999999
No 66
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=90.60 E-value=0.12 Score=56.83 Aligned_cols=42 Identities=19% Similarity=0.522 Sum_probs=33.7
Q ss_pred cccccccccceeeeecCCCcccccchHhHHHh-HhCCCccccccccC
Q 003291 4 SCAVCADTLEWVAYGGCGHREVCSTCVARLRF-ICQDRRCCICKTEN 49 (833)
Q Consensus 4 ~C~IC~e~~~~~a~~~C~H~~~C~~C~lRLR~-L~~~k~CpiCrte~ 49 (833)
-|.||.|=+.+-.++||+|. + |++.+|. |.++..||.|..+.
T Consensus 25 RC~IC~eyf~ip~itpCsHt-f---CSlCIR~~L~~~p~CP~C~~~~ 67 (442)
T KOG0287|consen 25 RCGICFEYFNIPMITPCSHT-F---CSLCIRKFLSYKPQCPTCCVTV 67 (442)
T ss_pred HHhHHHHHhcCceeccccch-H---HHHHHHHHhccCCCCCceeccc
Confidence 39999999999999999996 4 5555664 45689999998654
No 67
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=90.52 E-value=0.096 Score=36.49 Aligned_cols=24 Identities=21% Similarity=0.566 Sum_probs=16.3
Q ss_pred cccccCCCCCCCCCCCcccccccChhhhhccccccc
Q 003291 108 LSCSVCDNMEGPNDGSKRRARFRNIEQLKGHLFHRH 143 (833)
Q Consensus 108 ~~C~~C~k~~~~~~g~~~~~~F~s~~~Lk~Hlr~~H 143 (833)
|.|.+|++ .|.+...|..|++.+|
T Consensus 2 ~~C~~C~~------------~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 2 FECDECGK------------TFSSLSALREHKRSHC 25 (27)
T ss_dssp EEETTTTE------------EESSHHHHHHHHCTTT
T ss_pred CCCCccCC------------ccCChhHHHHHhHHhc
Confidence 56777766 7777777777776544
No 68
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=89.80 E-value=0.11 Score=62.21 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=15.5
Q ss_pred CCccccccccCceEEEecc
Q 003291 39 DRRCCICKTENNVVFVTKA 57 (833)
Q Consensus 39 ~k~CpiCrte~~~V~~tk~ 57 (833)
-..||+|+.|+..|++...
T Consensus 160 aqTCPiDR~EF~~v~V~eS 178 (1134)
T KOG0825|consen 160 AQTCPVDRGEFGEVKVLES 178 (1134)
T ss_pred cccCchhhhhhheeeeecc
Confidence 4789999999998887654
No 69
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=89.03 E-value=0.23 Score=55.31 Aligned_cols=45 Identities=22% Similarity=0.515 Sum_probs=29.8
Q ss_pred CCccccccccccee-------------eeecCCCcccccchHhHHHhHhCCCccccccccC
Q 003291 2 DDSCAVCADTLEWV-------------AYGGCGHREVCSTCVARLRFICQDRRCCICKTEN 49 (833)
Q Consensus 2 ~~~C~IC~e~~~~~-------------a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~ 49 (833)
|..|.||+|++-.. ...||+|. . +.=.+|+. +-.+..|||||...
T Consensus 287 D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-l-Hl~CLknW-~ERqQTCPICr~p~ 344 (491)
T COG5243 287 DRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-L-HLHCLKNW-LERQQTCPICRRPV 344 (491)
T ss_pred CCeEEEecccccCCCCccCcccccCCcccccccce-e-eHHHHHHH-HHhccCCCcccCcc
Confidence 56899999994322 34699993 2 33234443 33689999999763
No 70
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.68 E-value=0.2 Score=59.75 Aligned_cols=45 Identities=24% Similarity=0.595 Sum_probs=36.5
Q ss_pred CCCcccccccccce-----eeeecCCCcccccchHhHHHhHhCCCcccccccc
Q 003291 1 MDDSCAVCADTLEW-----VAYGGCGHREVCSTCVARLRFICQDRRCCICKTE 48 (833)
Q Consensus 1 m~~~C~IC~e~~~~-----~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte 48 (833)
+++.|+||.|.+.. ....+|+|- .|..|.-+- +-.+..||+||..
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W--~er~qtCP~CR~~ 339 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSW--FERQQTCPTCRTV 339 (543)
T ss_pred cCCeeeeechhhccccccccceeecccc-hHHHHHHHH--HHHhCcCCcchhh
Confidence 47889999999998 788999995 788886543 2238999999993
No 71
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=88.67 E-value=0.21 Score=34.75 Aligned_cols=25 Identities=24% Similarity=0.606 Sum_probs=14.5
Q ss_pred ccCChhhhccccccccCChHHHHHHHHHhhC
Q 003291 250 FLCEDEACLAKKFVVFQSEAEMKRHNAIEHG 280 (833)
Q Consensus 250 y~C~~~~C~k~kfvvF~s~~eLk~H~~~hHg 280 (833)
|.|.. |.+. |.+...|..|++.|++
T Consensus 2 ~~C~~--C~~~----F~~~~~l~~H~~~h~~ 26 (27)
T PF13912_consen 2 FECDE--CGKT----FSSLSALREHKRSHCS 26 (27)
T ss_dssp EEETT--TTEE----ESSHHHHHHHHCTTTT
T ss_pred CCCCc--cCCc----cCChhHHHHHhHHhcC
Confidence 55555 5553 6666666666655543
No 72
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=88.32 E-value=0.34 Score=43.78 Aligned_cols=47 Identities=21% Similarity=0.622 Sum_probs=35.0
Q ss_pred CCcccccccccc-------------eeeeecCCCcccccchHhHHHhHh-CCCccccccccC
Q 003291 2 DDSCAVCADTLE-------------WVAYGGCGHREVCSTCVARLRFIC-QDRRCCICKTEN 49 (833)
Q Consensus 2 ~~~C~IC~e~~~-------------~~a~~~C~H~~~C~~C~lRLR~L~-~~k~CpiCrte~ 49 (833)
|+.|.||..+++ .++.|.|+|. +-.-|.++-..-- .+..||+||++.
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~-FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHN-FHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccH-HHHHHHHHHHccccCCCCCCCcCCee
Confidence 577888877766 3456899995 8888887764432 368999999875
No 73
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=88.27 E-value=0.26 Score=42.20 Aligned_cols=41 Identities=34% Similarity=0.871 Sum_probs=19.4
Q ss_pred ccccccccccee-eeecCCCcccccchHhHHHhHhCCCccccccccC
Q 003291 4 SCAVCADTLEWV-AYGGCGHREVCSTCVARLRFICQDRRCCICKTEN 49 (833)
Q Consensus 4 ~C~IC~e~~~~~-a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~ 49 (833)
.|.+|.+-+..- .+|.|.|. .|..|+-. ... ..||+|.+..
T Consensus 9 rCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~---~~~-~~CPvC~~Pa 50 (65)
T PF14835_consen 9 RCSICFDILKEPVCLGGCEHI-FCSSCIRD---CIG-SECPVCHTPA 50 (65)
T ss_dssp S-SSS-S--SS-B---SSS---B-TTTGGG---GTT-TB-SSS--B-
T ss_pred CCcHHHHHhcCCceeccCccH-HHHHHhHH---hcC-CCCCCcCChH
Confidence 499999998655 57999996 99999833 323 4599998764
No 74
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=88.03 E-value=0.37 Score=38.09 Aligned_cols=37 Identities=24% Similarity=0.669 Sum_probs=20.2
Q ss_pred ccccccccce----eeeecCCCcccccchHhHHHhHh--CCCccc
Q 003291 5 CAVCADTLEW----VAYGGCGHREVCSTCVARLRFIC--QDRRCC 43 (833)
Q Consensus 5 C~IC~e~~~~----~a~~~C~H~~~C~~C~lRLR~L~--~~k~Cp 43 (833)
|.||.| ... -.+.+|+|. +|..|.-+|..-. +...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-E-EEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHHHhcCCCCeeeCc
Confidence 889999 544 455679996 9999999997754 355565
No 75
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=87.20 E-value=0.53 Score=52.06 Aligned_cols=76 Identities=18% Similarity=0.295 Sum_probs=42.1
Q ss_pred CCCCCCCCccCCchhHhhhccCCcccCCCCCCccCCcccccCChhHHHhhhcC--CCccCChhhhccccccccCChHHHH
Q 003291 195 PMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRR--DHFLCEDEACLAKKFVVFQSEAEMK 272 (833)
Q Consensus 195 ~~C~~C~k~F~~~~~L~~Hmrekhf~C~iC~k~~~~~~~yF~~~~~L~~H~r~--kHy~C~~~~C~k~kfvvF~s~~eLk 272 (833)
..|-||....-....|+.||..-|..=-.=-.. +..-.+|. .-.|..=.|+ ++-.|-. |.-. |..+..|.
T Consensus 280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~s-d~~Ln~Yq-rvrviNyiRkq~~~~~c~~--cd~~----F~~e~~l~ 351 (423)
T KOG2482|consen 280 VVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQS-DYSLNFYQ-RVRVINYIRKQKKKSRCAE--CDLS----FWKEPGLL 351 (423)
T ss_pred eEEEeeccchhhHHHHHHHHHHHHHhhHHhhcc-ccccchhh-hhhHHHHHHHHhhcccccc--cccc----ccCcchhh
Confidence 589999987777999999998544210000000 00011111 1112222222 3455555 7633 99999999
Q ss_pred HHHHHh
Q 003291 273 RHNAIE 278 (833)
Q Consensus 273 ~H~~~h 278 (833)
.||..+
T Consensus 352 ~hm~e~ 357 (423)
T KOG2482|consen 352 IHMVED 357 (423)
T ss_pred hhcccc
Confidence 999765
No 76
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=86.33 E-value=1.6 Score=50.18 Aligned_cols=44 Identities=27% Similarity=0.698 Sum_probs=37.8
Q ss_pred cccccccccceeee-ecCCCcccccchHhHHHhHhCCCccccccccCc
Q 003291 4 SCAVCADTLEWVAY-GGCGHREVCSTCVARLRFICQDRRCCICKTENN 50 (833)
Q Consensus 4 ~C~IC~e~~~~~a~-~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~ 50 (833)
.|.||+..+..-.. ..|+|. .|..|....... ...||.|+++..
T Consensus 23 ~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~--~~~cp~~~~~~~ 67 (391)
T KOG0297|consen 23 LCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSN--HQKCPVCRQELT 67 (391)
T ss_pred cCccccccccCCCCCCCCCCc-ccccccchhhcc--CcCCcccccccc
Confidence 69999999988777 499996 999999888776 889999988763
No 77
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=85.55 E-value=0.47 Score=33.30 Aligned_cols=21 Identities=33% Similarity=0.668 Sum_probs=15.0
Q ss_pred CCCCCCCCccCCchhHhhhcc
Q 003291 195 PMCEFCRTPFYGDNELYTHMS 215 (833)
Q Consensus 195 ~~C~~C~k~F~~~~~L~~Hmr 215 (833)
+.|..|++.|.+...|..||+
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~ 22 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMK 22 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTT
T ss_pred CCcccCCCCcCCHHHHHHHHc
Confidence 467777777777777777766
No 78
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.48 E-value=0.38 Score=55.13 Aligned_cols=45 Identities=31% Similarity=0.701 Sum_probs=39.9
Q ss_pred cccccccccceeeeecCCCcccccchHhHHHhHhCCCccccccccCce
Q 003291 4 SCAVCADTLEWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTENNV 51 (833)
Q Consensus 4 ~C~IC~e~~~~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~~ 51 (833)
.|.||+..+.-.+++||+|. .|..|..| .+.....||.||.++..
T Consensus 86 ~c~vc~~~l~~pv~tpcghs-~c~~Cl~r--~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 86 ECCVCSRALYPPVVTPCGHS-FCLECLDR--SLDQETECPLCRDELVE 130 (398)
T ss_pred hhhhhHhhcCCCcccccccc-ccHHHHHH--HhccCCCCccccccccc
Confidence 69999999999999999996 99999888 56688999999998864
No 79
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=84.64 E-value=0.34 Score=49.83 Aligned_cols=44 Identities=27% Similarity=0.680 Sum_probs=37.2
Q ss_pred cccccccccceeeeecCCCcccccchHhHHHhHhCCCccccccccCc
Q 003291 4 SCAVCADTLEWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTENN 50 (833)
Q Consensus 4 ~C~IC~e~~~~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~ 50 (833)
.|.||-+..+--.++.|+|. +|..|++|-. -+-..|-+|-.+.-
T Consensus 198 ~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y--~kg~~C~~Cgk~t~ 241 (259)
T COG5152 198 LCGICKKDYESPVVTECGHS-FCSLCAIRKY--QKGDECGVCGKATY 241 (259)
T ss_pred eehhchhhccchhhhhcchh-HHHHHHHHHh--ccCCcceecchhhc
Confidence 69999999999999999996 9999998753 35788999976654
No 80
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=83.39 E-value=0.28 Score=51.60 Aligned_cols=53 Identities=26% Similarity=0.524 Sum_probs=42.3
Q ss_pred cCCCCCCccCCcccccCChhHHHhhhcCCCccCChhhhccccccccCChHHHHHHHHHhhCCCCCh
Q 003291 220 TCHICQRQHPGQYEYYKNYDDLEIHFRRDHFLCEDEACLAKKFVVFQSEAEMKRHNAIEHGGRMSR 285 (833)
Q Consensus 220 ~C~iC~k~~~~~~~yF~~~~~L~~H~r~kHy~C~~~~C~k~kfvvF~s~~eLk~H~~~hHg~~~s~ 285 (833)
.|=.|.+. |.+..-|..|++.+||.|.+ |-++ .| +---|..|-..+|.+...+
T Consensus 12 wcwycnre-------fddekiliqhqkakhfkchi--chkk---l~-sgpglsihcmqvhketid~ 64 (341)
T KOG2893|consen 12 WCWYCNRE-------FDDEKILIQHQKAKHFKCHI--CHKK---LF-SGPGLSIHCMQVHKETIDK 64 (341)
T ss_pred eeeecccc-------cchhhhhhhhhhhccceeee--ehhh---hc-cCCCceeehhhhhhhhhhc
Confidence 59999998 99999999999999999999 9886 34 4445777776777665443
No 81
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=82.93 E-value=0.54 Score=38.06 Aligned_cols=42 Identities=24% Similarity=0.663 Sum_probs=23.3
Q ss_pred ccccccccceeee----ecCCCcccccchHhHHHhHhCCCcccccccc
Q 003291 5 CAVCADTLEWVAY----GGCGHREVCSTCVARLRFICQDRRCCICKTE 48 (833)
Q Consensus 5 C~IC~e~~~~~a~----~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte 48 (833)
|.+|.++++..-. =+|+.. +|.-|..+++. .....||-||+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~-IC~~C~~~i~~-~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQ-ICRFCYHDILE-NEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS-----HHHHHHHTT-SS-SB-TTT--B
T ss_pred CCCcccccccCCCccccCcCCCc-HHHHHHHHHHh-ccCCCCCCCCCC
Confidence 7899999854433 288996 99999999876 358999999975
No 82
>smart00355 ZnF_C2H2 zinc finger.
Probab=82.31 E-value=0.7 Score=30.74 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=10.5
Q ss_pred CCCCCCCccCCchhHhhhcc
Q 003291 196 MCEFCRTPFYGDNELYTHMS 215 (833)
Q Consensus 196 ~C~~C~k~F~~~~~L~~Hmr 215 (833)
.|..|++.|.....|..|++
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~ 21 (26)
T smart00355 2 RCPECGKVFKSKSALKEHMR 21 (26)
T ss_pred CCCCCcchhCCHHHHHHHHH
Confidence 45555555555555555543
No 83
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=81.96 E-value=0.65 Score=51.23 Aligned_cols=46 Identities=24% Similarity=0.715 Sum_probs=37.4
Q ss_pred CCcccccccccceeee----ecCCCcccccchHhHHHhHhCCCccccccccC
Q 003291 2 DDSCAVCADTLEWVAY----GGCGHREVCSTCVARLRFICQDRRCCICKTEN 49 (833)
Q Consensus 2 ~~~C~IC~e~~~~~a~----~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~ 49 (833)
||.|.+|+|++++.-- -+|+-. +|-.|.-.+|.-+ ..+||-||..-
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~l-ngrcpacrr~y 63 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNL-NGRCPACRRKY 63 (480)
T ss_pred cccCcccccccccccCCcccCCcccH-HHHHHHHHHHhhc-cCCChHhhhhc
Confidence 4569999999986553 488986 9999999998864 47899999754
No 84
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=81.83 E-value=0.42 Score=32.57 Aligned_cols=21 Identities=29% Similarity=0.880 Sum_probs=10.6
Q ss_pred ccCCCCCCccCCcccccCChhHHHhhhc
Q 003291 219 YTCHICQRQHPGQYEYYKNYDDLEIHFR 246 (833)
Q Consensus 219 f~C~iC~k~~~~~~~yF~~~~~L~~H~r 246 (833)
|.|.+|++. |.+...|+.|++
T Consensus 1 ~~C~~C~~~-------f~s~~~~~~H~~ 21 (25)
T PF12874_consen 1 FYCDICNKS-------FSSENSLRQHLR 21 (25)
T ss_dssp EEETTTTEE-------ESSHHHHHHHHT
T ss_pred CCCCCCCCC-------cCCHHHHHHHHC
Confidence 345555554 555555555544
No 85
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=81.81 E-value=0.69 Score=31.51 Aligned_cols=13 Identities=31% Similarity=0.526 Sum_probs=7.3
Q ss_pred cCChHHHHHHHHH
Q 003291 265 FQSEAEMKRHNAI 277 (833)
Q Consensus 265 F~s~~eLk~H~~~ 277 (833)
|.++..|+.|++.
T Consensus 10 f~s~~~~~~H~~s 22 (25)
T PF12874_consen 10 FSSENSLRQHLRS 22 (25)
T ss_dssp ESSHHHHHHHHTT
T ss_pred cCCHHHHHHHHCc
Confidence 5555555555543
No 86
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.76 E-value=0.56 Score=51.08 Aligned_cols=48 Identities=21% Similarity=0.630 Sum_probs=40.5
Q ss_pred cccccccccceeeeecCCCcccccchHhHHHhHhCCCccccccccCceEEE
Q 003291 4 SCAVCADTLEWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTENNVVFV 54 (833)
Q Consensus 4 ~C~IC~e~~~~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~~V~~ 54 (833)
-|.||-+....-.++.|+|. +|..|+++- +-+...|.||.++...+|-
T Consensus 243 ~c~icr~~f~~pVvt~c~h~-fc~~ca~~~--~qk~~~c~vC~~~t~g~~~ 290 (313)
T KOG1813|consen 243 KCFICRKYFYRPVVTKCGHY-FCEVCALKP--YQKGEKCYVCSQQTHGSFN 290 (313)
T ss_pred cccccccccccchhhcCCce-eehhhhccc--cccCCcceecccccccccc
Confidence 49999999999999999997 999999865 3355899999988876653
No 87
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=81.22 E-value=0.18 Score=63.60 Aligned_cols=57 Identities=28% Similarity=0.482 Sum_probs=37.9
Q ss_pred CCcccccccccceee---eecCCCcccccchHhH---HHhHh-----CCCccccccccCceEEEeccCC
Q 003291 2 DDSCAVCADTLEWVA---YGGCGHREVCSTCVAR---LRFIC-----QDRRCCICKTENNVVFVTKALG 59 (833)
Q Consensus 2 ~~~C~IC~e~~~~~a---~~~C~H~~~C~~C~lR---LR~L~-----~~k~CpiCrte~~~V~~tk~l~ 59 (833)
||.|+||+.+---.| ..-|.|. +=..|.-| -|.+- .-..||||+..++.+.+.+.+.
T Consensus 3486 DDmCmICFTE~L~AAP~IqL~C~Hi-FHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~LkDLld 3553 (3738)
T KOG1428|consen 3486 DDMCMICFTEALSAAPAIQLDCSHI-FHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIVLKDLLD 3553 (3738)
T ss_pred CceEEEEehhhhCCCcceecCCccc-hhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHHHHHHHH
Confidence 689999998643322 3589995 54555433 34442 3478999999998877665443
No 88
>PHA02862 5L protein; Provisional
Probab=80.91 E-value=0.88 Score=44.86 Aligned_cols=49 Identities=29% Similarity=0.554 Sum_probs=34.2
Q ss_pred CCCcccccccccceeeeecCCCccc----ccchHhHHHhHhCCCccccccccCc
Q 003291 1 MDDSCAVCADTLEWVAYGGCGHREV----CSTCVARLRFICQDRRCCICKTENN 50 (833)
Q Consensus 1 m~~~C~IC~e~~~~~a~~~C~H~~~----C~~C~lRLR~L~~~k~CpiCrte~~ 50 (833)
|++.|+||.++-+.. +.||.=+.. =-.|..+--...+...|++|+++-.
T Consensus 1 ~~diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 1 MSDICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CCCEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 899999999986433 567653211 1256666555567899999999873
No 89
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=79.89 E-value=1.4 Score=29.84 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=16.7
Q ss_pred ccCChhhhccccccccCChHHHHHHHHHhhC
Q 003291 250 FLCEDEACLAKKFVVFQSEAEMKRHNAIEHG 280 (833)
Q Consensus 250 y~C~~~~C~k~kfvvF~s~~eLk~H~~~hHg 280 (833)
|.|.. |... .. +..|+.|++.+|+
T Consensus 1 y~C~~--C~y~----t~-~~~l~~H~~~~H~ 24 (24)
T PF13909_consen 1 YKCPH--CSYS----TS-KSNLKRHLKRHHP 24 (24)
T ss_dssp EE-SS--SS-E----ES-HHHHHHHHHHHHS
T ss_pred CCCCC--CCCc----CC-HHHHHHHHHhhCc
Confidence 56777 8742 34 7889999999885
No 90
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=79.82 E-value=5.4 Score=31.64 Aligned_cols=44 Identities=30% Similarity=0.519 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHhhccCCcChHHHHHHHHHhhhhh--hHHHHHhhCC
Q 003291 581 DKYTAFKDITAQYRQGLIDTRKYLEYVKQYGLSH--LVLELARLCP 624 (833)
Q Consensus 581 ~~f~~Fk~~s~~~r~G~i~~~~y~~~~~~~gl~~--lv~ela~LlP 624 (833)
+.|.+|-++...|+++.|+..+-++.|..|--.| |+-|..+.+|
T Consensus 2 ~~Y~~FL~il~~y~~~~~~~~~v~~~v~~Ll~~hpdLl~~F~~FlP 47 (47)
T PF02671_consen 2 EVYNEFLKILNDYKKGRISRSEVIEEVSELLRGHPDLLEEFNRFLP 47 (47)
T ss_dssp HHHHHHHHHHHHHHCTCSCHHHHHHHHHHHTTT-HHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCHHHHHHHHhhCc
Confidence 6799999999999999999999999998885554 8888888777
No 91
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=79.48 E-value=1.2 Score=31.28 Aligned_cols=22 Identities=36% Similarity=0.720 Sum_probs=16.3
Q ss_pred cccccCCCCCCCCCCCcccccccChhhhhccccc
Q 003291 108 LSCSVCDNMEGPNDGSKRRARFRNIEQLKGHLFH 141 (833)
Q Consensus 108 ~~C~~C~k~~~~~~g~~~~~~F~s~~~Lk~Hlr~ 141 (833)
|.|..|++ .|.+...|..|++.
T Consensus 2 ~~C~~C~k------------~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDK------------YFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTB------------BBSSHHHHHCCTTS
T ss_pred CCcccCCC------------CcCCHHHHHHHHcc
Confidence 56777777 77777777777763
No 92
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=79.12 E-value=0.89 Score=50.35 Aligned_cols=27 Identities=30% Similarity=0.565 Sum_probs=22.9
Q ss_pred CCCCCCCCCccCCchhHhhhcc-CCccc
Q 003291 194 HPMCEFCRTPFYGDNELYTHMS-TEHYT 220 (833)
Q Consensus 194 h~~C~~C~k~F~~~~~L~~Hmr-ekhf~ 220 (833)
..+|-+|.+.|.++..|+.||| +.|++
T Consensus 195 r~~CLyCekifrdkntLkeHMrkK~Hrr 222 (423)
T KOG2482|consen 195 RLRCLYCEKIFRDKNTLKEHMRKKRHRR 222 (423)
T ss_pred hheeeeeccccCCcHHHHHHHHhccCcc
Confidence 4789999999999999999999 44543
No 93
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=77.23 E-value=1.1 Score=36.79 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=18.9
Q ss_pred CCccCChhhhccccccccCChHHHHHHHHHhhCCC
Q 003291 248 DHFLCEDEACLAKKFVVFQSEAEMKRHNAIEHGGR 282 (833)
Q Consensus 248 kHy~C~~~~C~k~kfvvF~s~~eLk~H~~~hHg~~ 282 (833)
.|..|+. |.. ++....+|++|+...|+.+
T Consensus 23 ~PatCP~--C~a----~~~~srnLrRHle~~H~~k 51 (54)
T PF09237_consen 23 QPATCPI--CGA----VIRQSRNLRRHLEIRHFKK 51 (54)
T ss_dssp --EE-TT--T------EESSHHHHHHHHHHHTTTS
T ss_pred CCCCCCc--chh----hccchhhHHHHHHHHhccc
Confidence 5677777 775 3888888888888888764
No 94
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=77.17 E-value=0.46 Score=60.49 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=23.3
Q ss_pred CCccCChhhhccccccccCChHHHHHHHHHhhCCCC
Q 003291 248 DHFLCEDEACLAKKFVVFQSEAEMKRHNAIEHGGRM 283 (833)
Q Consensus 248 kHy~C~~~~C~k~kfvvF~s~~eLk~H~~~hHg~~~ 283 (833)
+.| |.. |. |.|.....|..||++.|+.+.
T Consensus 1328 ~~~-c~~--c~----~~~~~~~alqihm~~~~~~~k 1356 (1406)
T KOG1146|consen 1328 TYH-CLA--CE----VLLSGREALQIHMRSSAHRRK 1356 (1406)
T ss_pred ccc-chH--HH----hhcchhHHHHHHHHHhhhccc
Confidence 445 877 75 569999999999999888763
No 95
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=77.01 E-value=0.71 Score=31.30 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=14.3
Q ss_pred cccccCCCCCCCCCCCcccccccChhhhhccccccc
Q 003291 108 LSCSVCDNMEGPNDGSKRRARFRNIEQLKGHLFHRH 143 (833)
Q Consensus 108 ~~C~~C~k~~~~~~g~~~~~~F~s~~~Lk~Hlr~~H 143 (833)
|.|+.|+. ... ...|..|++.+|
T Consensus 1 y~C~~C~y------------~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPHCSY------------STS-KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SSSS-------------EES-HHHHHHHHHHHH
T ss_pred CCCCCCCC------------cCC-HHHHHHHHHhhC
Confidence 46778876 444 667888877655
No 96
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=76.68 E-value=1.4 Score=36.73 Aligned_cols=43 Identities=23% Similarity=0.512 Sum_probs=33.8
Q ss_pred CcccccccccceeeeecCCCcccccchHhHHHhHhCCCccccccccCc
Q 003291 3 DSCAVCADTLEWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTENN 50 (833)
Q Consensus 3 ~~C~IC~e~~~~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~ 50 (833)
..|+.|...-..-.+.+|+|. +|..|-==- +-.-||+|-+.++
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~----rYngCPfC~~~~~ 50 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHL-ICDNCFPGE----RYNGCPFCGTPFE 50 (55)
T ss_pred eeEEEccccccccccccccce-eeccccChh----hccCCCCCCCccc
Confidence 358888888777888999996 999996433 3478999987664
No 97
>smart00355 ZnF_C2H2 zinc finger.
Probab=76.23 E-value=2.4 Score=28.04 Aligned_cols=23 Identities=26% Similarity=0.638 Sum_probs=15.0
Q ss_pred ccCChhhhccccccccCChHHHHHHHHHh
Q 003291 250 FLCEDEACLAKKFVVFQSEAEMKRHNAIE 278 (833)
Q Consensus 250 y~C~~~~C~k~kfvvF~s~~eLk~H~~~h 278 (833)
|.|.. |.+. |.+...|..|+..|
T Consensus 1 ~~C~~--C~~~----f~~~~~l~~H~~~H 23 (26)
T smart00355 1 YRCPE--CGKV----FKSKSALKEHMRTH 23 (26)
T ss_pred CCCCC--Ccch----hCCHHHHHHHHHHh
Confidence 45666 6654 77777777777643
No 98
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=75.55 E-value=1.1 Score=57.12 Aligned_cols=66 Identities=17% Similarity=0.338 Sum_probs=31.8
Q ss_pred CCCCCCCccCCchhHhhhccCC--------cccCCCCCCccCCcccccCChhHHHhhhc-CCCccCChhhhccccccccC
Q 003291 196 MCEFCRTPFYGDNELYTHMSTE--------HYTCHICQRQHPGQYEYYKNYDDLEIHFR-RDHFLCEDEACLAKKFVVFQ 266 (833)
Q Consensus 196 ~C~~C~k~F~~~~~L~~Hmrek--------hf~C~iC~k~~~~~~~yF~~~~~L~~H~r-~kHy~C~~~~C~k~kfvvF~ 266 (833)
.|..|..+|....++..|-+.+ -+.|.+|+.. |.....+. |+- ..||.|.. |... |.
T Consensus 1230 ~~~~~e~~f~~~~~~~~~a~~~~~~~~~sGe~~c~~~~~~-------~~~~~~~~-~l~~~~~~~~~~--~~~~----~~ 1295 (1406)
T KOG1146|consen 1230 LPNALEQPFPQEPEPTATAPPKPPELPASGEGECGAVDEL-------LTPSFGIS-TLDVTHRYLCRQ--CKMA----FD 1295 (1406)
T ss_pred cHHhhhcCccCcccccccCCCCCCcCcCCCcchhhhcccc-------ccCcccee-ecccchhHHHHH--HHhh----hc
Confidence 3445555555555555554411 1455555554 44444444 332 24455555 5443 55
Q ss_pred ChHHHHHHH
Q 003291 267 SEAEMKRHN 275 (833)
Q Consensus 267 s~~eLk~H~ 275 (833)
.+..|..|.
T Consensus 1296 ~~~~l~~~~ 1304 (1406)
T KOG1146|consen 1296 GEAPLTAHQ 1304 (1406)
T ss_pred chhHHHHHH
Confidence 555555554
No 99
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.70 E-value=2.2 Score=48.05 Aligned_cols=45 Identities=20% Similarity=0.581 Sum_probs=30.3
Q ss_pred ccccccccc---ceeeeecCCCcccccchHhHHHhHhCCCccccccccCc
Q 003291 4 SCAVCADTL---EWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTENN 50 (833)
Q Consensus 4 ~C~IC~e~~---~~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~ 50 (833)
.|+||.|.. +-+-+.||.|. .=..|+=.= .+-..+.||+||+...
T Consensus 231 ~CaIClEdY~~GdklRiLPC~H~-FH~~CIDpW-L~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 231 TCAICLEDYEKGDKLRILPCSHK-FHVNCIDPW-LTQTRTFCPVCKRDIR 278 (348)
T ss_pred eEEEeecccccCCeeeEecCCCc-hhhccchhh-HhhcCccCCCCCCcCC
Confidence 899999985 34455799995 544555332 2223466999999664
No 100
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=73.67 E-value=1.8 Score=31.75 Aligned_cols=22 Identities=18% Similarity=0.532 Sum_probs=17.0
Q ss_pred CCCCCCCCCccCCchhHhhhcc
Q 003291 194 HPMCEFCRTPFYGDNELYTHMS 215 (833)
Q Consensus 194 h~~C~~C~k~F~~~~~L~~Hmr 215 (833)
.+.|++|++.|.+...+..|++
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~ 24 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLK 24 (35)
T ss_pred CeEccccCCccCCHHHHHHHHC
Confidence 4668888888887777888876
No 101
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=73.49 E-value=1.9 Score=35.38 Aligned_cols=33 Identities=24% Similarity=0.464 Sum_probs=23.1
Q ss_pred hhcc-CCcccCCCCCCccCCcccccCChhHHHhhhcCCCcc
Q 003291 212 THMS-TEHYTCHICQRQHPGQYEYYKNYDDLEIHFRRDHFL 251 (833)
Q Consensus 212 ~Hmr-ekhf~C~iC~k~~~~~~~yF~~~~~L~~H~r~kHy~ 251 (833)
.|++ +.|-.|.+|+.. +....+|++|+...|+.
T Consensus 17 ~~~~S~~PatCP~C~a~-------~~~srnLrRHle~~H~~ 50 (54)
T PF09237_consen 17 SKSQSEQPATCPICGAV-------IRQSRNLRRHLEIRHFK 50 (54)
T ss_dssp CCCTTS--EE-TTT--E-------ESSHHHHHHHHHHHTTT
T ss_pred HhhccCCCCCCCcchhh-------ccchhhHHHHHHHHhcc
Confidence 3444 778999999998 99999999999877764
No 102
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=72.60 E-value=3.2 Score=41.76 Aligned_cols=56 Identities=21% Similarity=0.464 Sum_probs=37.6
Q ss_pred CCCcccccccccceeeeecCCCccc----ccchHhHHHhHhCCCccccccccCceEEEecc
Q 003291 1 MDDSCAVCADTLEWVAYGGCGHREV----CSTCVARLRFICQDRRCCICKTENNVVFVTKA 57 (833)
Q Consensus 1 m~~~C~IC~e~~~~~a~~~C~H~~~----C~~C~lRLR~L~~~k~CpiCrte~~~V~~tk~ 57 (833)
|+..|+||.++... ...||.=+.. =..|..|--.-.+...|++|+++...+...+.
T Consensus 7 ~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~~~kp 66 (162)
T PHA02825 7 MDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKKNYKK 66 (162)
T ss_pred CCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEEecCC
Confidence 45689999998653 3467753210 12566666666678999999999876655544
No 103
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.29 E-value=0.75 Score=51.26 Aligned_cols=45 Identities=22% Similarity=0.532 Sum_probs=36.3
Q ss_pred cccccccccceee-eecCCCcccccchHhHHHhHhCCCccccccccCc
Q 003291 4 SCAVCADTLEWVA-YGGCGHREVCSTCVARLRFICQDRRCCICKTENN 50 (833)
Q Consensus 4 ~C~IC~e~~~~~a-~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~ 50 (833)
.|.||.+=|.-.- .-.|.|+ +|..|.+.-.-+ ..+.||-||+-+.
T Consensus 45 ~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~-gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 45 ICPICLSLLKKTMTTKECLHR-FCFDCIWKALRS-GNNECPTCRKKLV 90 (381)
T ss_pred ccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHh-cCCCCchHHhhcc
Confidence 6999999876544 3489998 999999876555 5699999999874
No 104
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=71.16 E-value=1.6 Score=53.34 Aligned_cols=46 Identities=24% Similarity=0.661 Sum_probs=40.4
Q ss_pred CcccccccccceeeeecCCCcccccchHhHHHhHhCCCccccccccCc
Q 003291 3 DSCAVCADTLEWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTENN 50 (833)
Q Consensus 3 ~~C~IC~e~~~~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~ 50 (833)
..|.||++ .+...+++|+|. .|..|....-...+...||+|+..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHH
Confidence 36999999 999999999996 99999988877777789999998774
No 105
>KOG4204 consensus Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=67.99 E-value=19 Score=38.61 Aligned_cols=71 Identities=23% Similarity=0.417 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhccCCcChHHHHHHHHHhhhhh--hHHHHHhhCCChHHHH
Q 003291 556 PSVENIQAANRSLVERMRAAFEYDEDKYTAFKDITAQYRQGLIDTRKYLEYVKQYGLSH--LVLELARLCPDALKQK 630 (833)
Q Consensus 556 ~~~~~~~~~nk~lvekir~~L~~d~~~f~~Fk~~s~~~r~G~i~~~~y~~~~~~~gl~~--lv~ela~LlPd~~K~~ 630 (833)
+.++|.. +-|..|+..+..+.+.|.+|-+|-.+|+-.-|++.+-++.|+.|-..| |+..+-..||...|-.
T Consensus 17 ~t~~DAl----sYl~~VK~~f~d~p~kY~~FL~im~d~ka~~iD~~~vi~rv~eLfK~h~~Ll~gfN~fLP~~~~i~ 89 (231)
T KOG4204|consen 17 LTLDDAL----AYLKAVKEAFQDEPEKYDEFLEIMKDFKAQRIDTPGVIARVKELLKGHPDLLLGFNTFLPPGYKIT 89 (231)
T ss_pred CChHHHH----HHHHHHHHHHhcChHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHccCHHHHHHHHhhCcccceec
Confidence 5565553 447889999998888999999999999999999999999999997664 7777877888665544
No 106
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=67.43 E-value=62 Score=40.62 Aligned_cols=53 Identities=25% Similarity=0.394 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhccCCcChHHHHHHHHHh
Q 003291 554 PAPSVENIQAANRSLVERMRAAFEYDEDKYTAFKDITAQYRQGLIDTRKYLEYVKQY 610 (833)
Q Consensus 554 ~~~~~~~~~~~nk~lvekir~~L~~d~~~f~~Fk~~s~~~r~G~i~~~~y~~~~~~~ 610 (833)
.+|.|-|. .+-+|+|+..+..+.+-|+.|=+|-.+|+.+.|++.+.++.|..|
T Consensus 124 r~Ldv~DA----lsyLe~vK~~f~~rp~iYn~FLdiMkdFKsqaiDtpgVI~RVS~L 176 (1163)
T COG5602 124 RPLDVSDA----LSYLEKVKEQFSNRPEIYNNFLDIMKDFKSQAIDTPGVIERVSVL 176 (1163)
T ss_pred CCCChHHH----HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH
Confidence 45555443 467999999999999999999999999999999999999888765
No 107
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=66.34 E-value=3 Score=45.80 Aligned_cols=39 Identities=23% Similarity=0.547 Sum_probs=30.5
Q ss_pred cccccccccceeee-ecCCCcccccchHhHHHhHhCCCccccccc
Q 003291 4 SCAVCADTLEWVAY-GGCGHREVCSTCVARLRFICQDRRCCICKT 47 (833)
Q Consensus 4 ~C~IC~e~~~~~a~-~~C~H~~~C~~C~lRLR~L~~~k~CpiCrt 47 (833)
.|+-|--+|.++.. -||.|. +|+.|+. +-.++.||.|-.
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHv-FCl~CAr----~~~dK~Cp~C~d 131 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHV-FCLECAR----SDSDKICPLCDD 131 (389)
T ss_pred eecccCCcceeeecccccchh-hhhhhhh----cCccccCcCccc
Confidence 48888888876665 599995 9999985 335899999943
No 108
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=64.66 E-value=1.9 Score=50.22 Aligned_cols=50 Identities=20% Similarity=0.514 Sum_probs=38.0
Q ss_pred CcccccccccceeeeecCCCcccccchHhHHHhH---hCCCccccccccCceEE
Q 003291 3 DSCAVCADTLEWVAYGGCGHREVCSTCVARLRFI---CQDRRCCICKTENNVVF 53 (833)
Q Consensus 3 ~~C~IC~e~~~~~a~~~C~H~~~C~~C~lRLR~L---~~~k~CpiCrte~~~V~ 53 (833)
.+|-+|-++.+.+..+.|-|. +|..|..-.--- .+.-.||.|-.-+..-.
T Consensus 537 ~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 537 VECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred eeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 379999999999999999996 999998433211 13489999977665443
No 109
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=63.45 E-value=5.4 Score=37.83 Aligned_cols=26 Identities=23% Similarity=0.645 Sum_probs=19.5
Q ss_pred CCCCCCCCccCCchhHhhhccCCcccCCCCCCc
Q 003291 195 PMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQ 227 (833)
Q Consensus 195 ~~C~~C~k~F~~~~~L~~Hmrekhf~C~iC~k~ 227 (833)
..|.-||++||+. ++.|-.|..|+..
T Consensus 10 R~Cp~CG~kFYDL-------nk~PivCP~CG~~ 35 (108)
T PF09538_consen 10 RTCPSCGAKFYDL-------NKDPIVCPKCGTE 35 (108)
T ss_pred ccCCCCcchhccC-------CCCCccCCCCCCc
Confidence 5899999999974 3466777777765
No 110
>PRK04860 hypothetical protein; Provisional
Probab=61.90 E-value=3.8 Score=41.44 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=16.1
Q ss_pred HHHHHHHhcCCCCCCCCcccCCCCCCCCCCCCCCCccC
Q 003291 168 AQLNQHINSGDSVVDGTESERGGFMGHPMCEFCRTPFY 205 (833)
Q Consensus 168 ~~L~~H~r~h~~e~~g~~~~~~g~~~h~~C~~C~k~F~ 205 (833)
..+.+|.++|.++ ..+.|..|+..|.
T Consensus 129 ~~~rrH~ri~~g~------------~~YrC~~C~~~l~ 154 (160)
T PRK04860 129 LTVRRHNRVVRGE------------AVYRCRRCGETLV 154 (160)
T ss_pred CHHHHHHHHhcCC------------ccEECCCCCceeE
Confidence 3466676666655 4566766666654
No 111
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=61.51 E-value=4.2 Score=28.36 Aligned_cols=20 Identities=25% Similarity=0.539 Sum_probs=14.0
Q ss_pred CCCCCCCCccCCchhHhhhcc
Q 003291 195 PMCEFCRTPFYGDNELYTHMS 215 (833)
Q Consensus 195 ~~C~~C~k~F~~~~~L~~Hmr 215 (833)
..|.+|++.| ..+.|.+|+.
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEK 22 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHH
Confidence 3577788777 6667777764
No 112
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=61.34 E-value=6.5 Score=31.83 Aligned_cols=42 Identities=26% Similarity=0.517 Sum_probs=29.0
Q ss_pred ccccccc--ccceeeeecCC-----CcccccchHhHHHhHhCCCcccccc
Q 003291 4 SCAVCAD--TLEWVAYGGCG-----HREVCSTCVARLRFICQDRRCCICK 46 (833)
Q Consensus 4 ~C~IC~e--~~~~~a~~~C~-----H~~~C~~C~lRLR~L~~~k~CpiCr 46 (833)
.|.||.+ ..+...+.||. |. +=..|..+-........|++|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~-vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKY-VHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhH-HHHHHHHHHHHHcCCCcCCCCC
Confidence 5999997 33444578885 21 2237887777777788999995
No 113
>PLN02436 cellulose synthase A
Probab=60.54 E-value=5.9 Score=50.36 Aligned_cols=48 Identities=29% Similarity=0.706 Sum_probs=38.0
Q ss_pred Cccccccccc-------ceeeeecCCCcccccchHhHHHhHhCCCccccccccCceE
Q 003291 3 DSCAVCADTL-------EWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTENNVV 52 (833)
Q Consensus 3 ~~C~IC~e~~-------~~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~~V 52 (833)
.+|.||-|.+ -++|...|+- +||..|.-.-|.- ....||-|++--.++
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~f-pvCr~Cyeyer~e-g~~~Cpqckt~Y~r~ 91 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAF-PVCRPCYEYERRE-GNQACPQCKTRYKRI 91 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCC-ccccchhhhhhhc-CCccCcccCCchhhc
Confidence 4799999998 4566778888 5999999665553 579999999987644
No 114
>PLN02189 cellulose synthase
Probab=59.91 E-value=6.3 Score=50.03 Aligned_cols=48 Identities=31% Similarity=0.713 Sum_probs=38.0
Q ss_pred Ccccccccccc-------eeeeecCCCcccccchHhHHHhHhCCCccccccccCceE
Q 003291 3 DSCAVCADTLE-------WVAYGGCGHREVCSTCVARLRFICQDRRCCICKTENNVV 52 (833)
Q Consensus 3 ~~C~IC~e~~~-------~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~~V 52 (833)
..|.||-+.+. ++|...|+- +||..|.-.=|.- ....||-|++--.++
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~f-pvCr~Cyeyer~e-g~q~CpqCkt~Y~r~ 89 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGF-PVCRPCYEYERRE-GTQNCPQCKTRYKRL 89 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCC-ccccchhhhhhhc-CCccCcccCCchhhc
Confidence 47999999976 566678888 5999999666554 579999999977643
No 115
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.06 E-value=6.3 Score=44.63 Aligned_cols=50 Identities=30% Similarity=0.613 Sum_probs=31.3
Q ss_pred Ccccccccc----cceeeeecCCCcccccchHhHHHhHhC--CCcccccc-ccCceEEE
Q 003291 3 DSCAVCADT----LEWVAYGGCGHREVCSTCVARLRFICQ--DRRCCICK-TENNVVFV 54 (833)
Q Consensus 3 ~~C~IC~e~----~~~~a~~~C~H~~~C~~C~lRLR~L~~--~k~CpiCr-te~~~V~~ 54 (833)
.+|.||.+- -+..+++.|+|. +=..| +.+.+-+. .+.||||+ +.....++
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhi-fh~~c-l~qwfe~~Ps~R~cpic~ik~~~r~~~ 61 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHI-FHTTC-LTQWFEGDPSNRGCPICQIKLQERHVA 61 (465)
T ss_pred ceeeEeccCCccccccccccchhhH-HHHHH-HHHHHccCCccCCCCceeecccceeee
Confidence 479999542 244567899994 44455 44555543 37999999 43344444
No 116
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=57.11 E-value=5.7 Score=44.98 Aligned_cols=75 Identities=24% Similarity=0.263 Sum_probs=54.4
Q ss_pred CCCCCCCCCccCCchhHhhhccCCcccCCCCCCccCCcccccCChhHHHhhhcC---CCccCChhhhccccccccCChHH
Q 003291 194 HPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRR---DHFLCEDEACLAKKFVVFQSEAE 270 (833)
Q Consensus 194 h~~C~~C~k~F~~~~~L~~Hmrekhf~C~iC~k~~~~~~~yF~~~~~L~~H~r~---kHy~C~~~~C~k~kfvvF~s~~e 270 (833)
+-.|-||++.|.+-..-.+||...|- =.|= ..+|..+...|..=+.+ .-|.|.. |...+ .-|.+-..
T Consensus 166 Pt~CLfC~~~~k~~e~~~~HM~~~Hg-ffIP------dreYL~D~~GLl~YLgeKV~~~~~CL~--CN~~~-~~f~slea 235 (390)
T KOG2785|consen 166 PTDCLFCDKKSKSLEENLKHMFKEHG-FFIP------DREYLTDEKGLLKYLGEKVGIGFICLF--CNELG-RPFSSLEA 235 (390)
T ss_pred CcceeecCCCcccHHHHHHHHhhccC-CcCC------chHhhhchhHHHHHHHHHhccCceEEE--ecccc-CcccccHH
Confidence 46799999999999999999986551 1121 23467777777776665 4588988 87432 24888889
Q ss_pred HHHHHHHh
Q 003291 271 MKRHNAIE 278 (833)
Q Consensus 271 Lk~H~~~h 278 (833)
.++||...
T Consensus 236 vr~HM~~K 243 (390)
T KOG2785|consen 236 VRAHMRDK 243 (390)
T ss_pred HHHHHhhc
Confidence 99999764
No 117
>PHA02929 N1R/p28-like protein; Provisional
Probab=57.10 E-value=9 Score=41.23 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=16.5
Q ss_pred hHhCCCccccccccCceEEEec
Q 003291 35 FICQDRRCCICKTENNVVFVTK 56 (833)
Q Consensus 35 ~L~~~k~CpiCrte~~~V~~tk 56 (833)
.+-....||+||+.+..|+-.+
T Consensus 212 Wl~~~~tCPlCR~~~~~v~~~r 233 (238)
T PHA02929 212 WKKEKNTCPVCRTPFISVIKSR 233 (238)
T ss_pred HHhcCCCCCCCCCEeeEEeeee
Confidence 4556889999999887766443
No 118
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.37 E-value=4.5 Score=43.76 Aligned_cols=47 Identities=26% Similarity=0.531 Sum_probs=32.8
Q ss_pred CCcccccccccceee----------eecCCCcccccchHhHHHh-HhCCCccccccccCc
Q 003291 2 DDSCAVCADTLEWVA----------YGGCGHREVCSTCVARLRF-ICQDRRCCICKTENN 50 (833)
Q Consensus 2 ~~~C~IC~e~~~~~a----------~~~C~H~~~C~~C~lRLR~-L~~~k~CpiCrte~~ 50 (833)
|.+|.||-..+.... ...||| +=+.-.+|=.- +-++..||+||+-.+
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~LsCnH--vFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNH--VFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeeeccc--chHHHhhhhheeecCCCCCchHHHHhh
Confidence 568999999876544 258999 44444444433 347899999998765
No 119
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=54.23 E-value=8.4 Score=42.23 Aligned_cols=45 Identities=27% Similarity=0.614 Sum_probs=32.3
Q ss_pred cccccccccc-----eeeeecCCCcccccchHhHHHhHhCCCccccccccCc
Q 003291 4 SCAVCADTLE-----WVAYGGCGHREVCSTCVARLRFICQDRRCCICKTENN 50 (833)
Q Consensus 4 ~C~IC~e~~~-----~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~ 50 (833)
.|.+|-.... ..-+.+|+|+ +|-.|+-||= .++...||-|.+.+-
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~-lCEsCvd~iF-~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHR-LCESCVDRIF-SLGPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccch-HHHHHHHHHH-hcCCCCCCcccchhh
Confidence 4777755421 2223599997 9999999994 459999998876653
No 120
>PF04641 Rtf2: Rtf2 RING-finger
Probab=53.86 E-value=12 Score=40.61 Aligned_cols=43 Identities=19% Similarity=0.542 Sum_probs=34.1
Q ss_pred ccccccccc----ceeeeecCCCcccccchHhHHHhHhCCCccccccccCc
Q 003291 4 SCAVCADTL----EWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTENN 50 (833)
Q Consensus 4 ~C~IC~e~~----~~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~ 50 (833)
.|.|....+ .++++-+|||. ++..+.-.+. +...||+|-+.+.
T Consensus 115 ~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k---~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 115 ICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELK---KSKKCPVCGKPFT 161 (260)
T ss_pred ECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhc---ccccccccCCccc
Confidence 488887776 57788899995 8888887774 5778999998873
No 121
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=53.75 E-value=9.2 Score=27.93 Aligned_cols=22 Identities=18% Similarity=0.661 Sum_probs=14.0
Q ss_pred cccCCCCCCccCCcccccCChhHHHhhhc
Q 003291 218 HYTCHICQRQHPGQYEYYKNYDDLEIHFR 246 (833)
Q Consensus 218 hf~C~iC~k~~~~~~~yF~~~~~L~~H~r 246 (833)
.|.|.+|++. |.+...+..|+.
T Consensus 3 ~~~C~~C~~~-------~~~~~~~~~H~~ 24 (35)
T smart00451 3 GFYCKLCNVT-------FTDEISVEAHLK 24 (35)
T ss_pred CeEccccCCc-------cCCHHHHHHHHC
Confidence 3567777765 666666666654
No 122
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=53.45 E-value=6.4 Score=39.01 Aligned_cols=34 Identities=18% Similarity=0.357 Sum_probs=25.3
Q ss_pred CCCCCCCCCCccCCchhHhh-hccCCcccCCCCCCc
Q 003291 193 GHPMCEFCRTPFYGDNELYT-HMSTEHYTCHICQRQ 227 (833)
Q Consensus 193 ~h~~C~~C~k~F~~~~~L~~-Hmrekhf~C~iC~k~ 227 (833)
.-|.|+.|+..|...+.+.. ++ ...|.|+.|+..
T Consensus 98 ~~Y~Cp~C~~~y~~~ea~~~~d~-~~~f~Cp~Cg~~ 132 (147)
T smart00531 98 AYYKCPNCQSKYTFLEANQLLDM-DGTFTCPRCGEE 132 (147)
T ss_pred cEEECcCCCCEeeHHHHHHhcCC-CCcEECCCCCCE
Confidence 35889999998887666554 44 555899999875
No 123
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.51 E-value=12 Score=40.26 Aligned_cols=43 Identities=30% Similarity=0.411 Sum_probs=36.1
Q ss_pred cccccccccc----eeeeecCCCcccccchHhHHHhHhCCCccccccccC
Q 003291 4 SCAVCADTLE----WVAYGGCGHREVCSTCVARLRFICQDRRCCICKTEN 49 (833)
Q Consensus 4 ~C~IC~e~~~----~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~ 49 (833)
.|.||-+.|. .+++-+|+|. ||+.|+-+| +-+|..||+|-..+
T Consensus 223 iCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEkl--ir~D~v~pv~d~pl 269 (303)
T KOG3039|consen 223 ICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKL--IRKDMVDPVTDKPL 269 (303)
T ss_pred ecccchhhhcCccceEEeccCCcE-eeHHHHHHh--ccccccccCCCCcC
Confidence 5999988764 4567899996 999999988 45899999999887
No 124
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=52.34 E-value=9.6 Score=47.20 Aligned_cols=53 Identities=26% Similarity=0.464 Sum_probs=39.6
Q ss_pred CCCCCCCCCCCCCCCccCC---chhHhhhccCCcccCCCCCCccCCcccccCChhHHHhhhcCCCccCChhhhccc
Q 003291 188 RGGFMGHPMCEFCRTPFYG---DNELYTHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRRDHFLCEDEACLAK 260 (833)
Q Consensus 188 ~~g~~~h~~C~~C~k~F~~---~~~L~~Hmrekhf~C~iC~k~~~~~~~yF~~~~~L~~H~r~kHy~C~~~~C~k~ 260 (833)
+.|+-.-..|.-||..|.- ...|.-|.......||.|+.. ...|..|+. |+..
T Consensus 429 RRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~------------------~~~p~~Cp~--Cgs~ 484 (730)
T COG1198 429 RRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQ------------------EPIPQSCPE--CGSE 484 (730)
T ss_pred cCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCC------------------CCCCCCCCC--CCCC
Confidence 5666656678888866543 345778888888899999874 356899999 9975
No 125
>PLN02400 cellulose synthase
Probab=52.29 E-value=8 Score=49.34 Aligned_cols=48 Identities=29% Similarity=0.614 Sum_probs=35.6
Q ss_pred Ccccccccccc-------eeeeecCCCcccccchHhHHHhHhCCCccccccccCceE
Q 003291 3 DSCAVCADTLE-------WVAYGGCGHREVCSTCVARLRFICQDRRCCICKTENNVV 52 (833)
Q Consensus 3 ~~C~IC~e~~~-------~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~~V 52 (833)
.+|.||-|.+. ++|...|+- +||..|.-.=| --....||-|||--.+.
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaF-PVCRpCYEYER-keGnq~CPQCkTrYkR~ 91 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAF-PVCRPCYEYER-KDGTQCCPQCKTRYRRH 91 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCC-ccccchhheec-ccCCccCcccCCccccc
Confidence 47999999975 456678888 59999983322 23579999999877643
No 126
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=51.44 E-value=14 Score=32.16 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=31.8
Q ss_pred cccccccccceeeeecCCCcccccchHhHHHhHhC-CCccccccccCc
Q 003291 4 SCAVCADTLEWVAYGGCGHREVCSTCVARLRFICQ-DRRCCICKTENN 50 (833)
Q Consensus 4 ~C~IC~e~~~~~a~~~C~H~~~C~~C~lRLR~L~~-~k~CpiCrte~~ 50 (833)
.|.||.+-+..-++.+|+|. .+..|..+- |-. ...||+|+..+.
T Consensus 6 ~CpIt~~lM~dPVi~~~G~t-yer~~I~~~--l~~~~~~~P~t~~~l~ 50 (73)
T PF04564_consen 6 LCPITGELMRDPVILPSGHT-YERSAIERW--LEQNGGTDPFTRQPLS 50 (73)
T ss_dssp B-TTTSSB-SSEEEETTSEE-EEHHHHHHH--HCTTSSB-TTT-SB-S
T ss_pred CCcCcCcHhhCceeCCcCCE-EcHHHHHHH--HHcCCCCCCCCCCcCC
Confidence 59999999999999999995 888888544 434 799999987664
No 127
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=50.77 E-value=54 Score=33.22 Aligned_cols=56 Identities=16% Similarity=0.367 Sum_probs=37.1
Q ss_pred cccCCCCCCccCCcccccCChhHHHhhhcCCCccCChhhhccccccccCChHHHHHHHHHhhCCC
Q 003291 218 HYTCHICQRQHPGQYEYYKNYDDLEIHFRRDHFLCEDEACLAKKFVVFQSEAEMKRHNAIEHGGR 282 (833)
Q Consensus 218 hf~C~iC~k~~~~~~~yF~~~~~L~~H~r~kHy~C~~~~C~k~kfvvF~s~~eLk~H~~~hHg~~ 282 (833)
...|.+|--. =..|..- ..-++|+..|.=.|....|.- -.+-.+|++|.+..|...
T Consensus 80 ~L~CPLCRG~---V~GWtvv-e~AR~~LN~K~RsC~~e~C~F-----~GtY~eLrKHar~~HP~~ 135 (162)
T PF07800_consen 80 ELACPLCRGE---VKGWTVV-EPARRFLNAKKRSCSQESCSF-----SGTYSELRKHARSEHPSA 135 (162)
T ss_pred cccCccccCc---eeceEEc-hHHHHHhccCCccCccccccc-----ccCHHHHHHHHHhhCCCC
Confidence 3567777543 1122222 335667777888888878872 347789999999999864
No 128
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=50.06 E-value=4.5 Score=45.00 Aligned_cols=42 Identities=19% Similarity=0.698 Sum_probs=33.5
Q ss_pred cccccccc-cceeeeecCCCcccccchHhHHHhHhCCCcccccccc
Q 003291 4 SCAVCADT-LEWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTE 48 (833)
Q Consensus 4 ~C~IC~e~-~~~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte 48 (833)
+|.+|-.= ++...+..|-|. +|..|.++- |...++||.|...
T Consensus 17 tC~LC~GYliDATTI~eCLHT-FCkSCivk~--l~~~~~CP~C~i~ 59 (331)
T KOG2660|consen 17 TCRLCGGYLIDATTITECLHT-FCKSCIVKY--LEESKYCPTCDIV 59 (331)
T ss_pred ehhhccceeecchhHHHHHHH-HHHHHHHHH--HHHhccCCcccee
Confidence 58888875 466778899996 999999875 5558999999643
No 129
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=50.02 E-value=6.2 Score=31.98 Aligned_cols=32 Identities=22% Similarity=0.611 Sum_probs=20.7
Q ss_pred ecCCCcccccchHhHHHhHhCCCccccccccCce
Q 003291 18 GGCGHREVCSTCVARLRFICQDRRCCICKTENNV 51 (833)
Q Consensus 18 ~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~~ 51 (833)
-.|...-.|..|...| |.....|+||..++++
T Consensus 16 i~C~dHYLCl~CLt~m--l~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 16 IKCSDHYLCLNCLTLM--LSRSDRCPICGKPLPT 47 (50)
T ss_dssp EE-SS-EEEHHHHHHT---SSSSEETTTTEE---
T ss_pred eeecchhHHHHHHHHH--hccccCCCcccCcCcc
Confidence 3564334899998887 4468899999998875
No 130
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=49.87 E-value=25 Score=41.83 Aligned_cols=61 Identities=21% Similarity=0.447 Sum_probs=48.6
Q ss_pred HHHHHHhhc--CChhHHHHHHHHHHhhccCCcChHHHH-HHHHHhh---------hhhhHHHHHhhCCChHHH
Q 003291 569 VERMRAAFE--YDEDKYTAFKDITAQYRQGLIDTRKYL-EYVKQYG---------LSHLVLELARLCPDALKQ 629 (833)
Q Consensus 569 vekir~~L~--~d~~~f~~Fk~~s~~~r~G~i~~~~y~-~~~~~~g---------l~~lv~ela~LlPd~~K~ 629 (833)
|+.|.++|+ .+++.--..+.+.+.|+.|+|+..+.. +-...|+ |+++|||+-.|.|.+...
T Consensus 112 ~~~i~~~~~~~~~~~~~e~l~~~lh~ykkg~~~gddl~~e~~~~l~~~~~~~~~~l~~vfpe~k~l~p~~~~s 184 (529)
T PRK06253 112 IEQIEEILGRDLSEEKIESLREVLHSYKKGEIDGDDLVLEISKALEVSDEMVLKILDEVFPEFKELKPESSRL 184 (529)
T ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHhhcCCCccchhHHHHHHhcCCChHHHHHHHHHhChHhhhcCCccccC
Confidence 566777776 456677789999999999999999987 5555555 558999999999998643
No 131
>KOG4204 consensus Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=47.66 E-value=46 Score=35.70 Aligned_cols=62 Identities=21% Similarity=0.376 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHhhccCCcChHHHHHHHHHhhhh--hhHHHHHhhCCChH
Q 003291 566 RSLVERMRAAFEYDEDKYTAFKDITAQYRQGLIDTRKYLEYVKQYGLS--HLVLELARLCPDAL 627 (833)
Q Consensus 566 k~lvekir~~L~~d~~~f~~Fk~~s~~~r~G~i~~~~y~~~~~~~gl~--~lv~ela~LlPd~~ 627 (833)
...|.+|+.....|...|..|.++..-|+.|..+-.+-|..|..|-.. .|+-|+-+.+|+..
T Consensus 131 ~~fv~klk~rf~~~~~v~~s~l~il~~y~~~~ks~~e~~~eV~~L~~~~~DL~~ef~~~lp~~~ 194 (231)
T KOG4204|consen 131 ISFVNKLKTRFQGDDHVYKSFLEILRMYQEGNKSVSEVYQEVEALLQGHEDLLEEFSHFLPTDP 194 (231)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHccCHHHHHHHHhhccCCc
Confidence 366999999999999999999999999999999999999888777544 58999888888764
No 132
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=47.05 E-value=4.8 Score=48.91 Aligned_cols=49 Identities=18% Similarity=0.459 Sum_probs=39.1
Q ss_pred CCCcccccccccceeeeecCCCcccccchHhHHHhHhC-CCccccccccCc
Q 003291 1 MDDSCAVCADTLEWVAYGGCGHREVCSTCVARLRFICQ-DRRCCICKTENN 50 (833)
Q Consensus 1 m~~~C~IC~e~~~~~a~~~C~H~~~C~~C~lRLR~L~~-~k~CpiCrte~~ 50 (833)
|+-+|.||++.+..-....|+| .+|..|.+.+-..-+ ...|++|+...+
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~-~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDH-IFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hhccCCceeEEeeccchhhhhH-HHHhhhhhceeeccCccccchhhhhhhh
Confidence 4568999999988778899999 599999987644434 789999986553
No 133
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=45.61 E-value=15 Score=46.89 Aligned_cols=46 Identities=30% Similarity=0.686 Sum_probs=35.4
Q ss_pred Ccccccccccc-------eeeeecCCCcccccchHhHHHhHhCCCccccccccCc
Q 003291 3 DSCAVCADTLE-------WVAYGGCGHREVCSTCVARLRFICQDRRCCICKTENN 50 (833)
Q Consensus 3 ~~C~IC~e~~~-------~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~ 50 (833)
.+|.||-+.+. ++|...|+- +||.-|.-.=|.- ....||-|+|--.
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~F-PVCrpCYEYEr~e-G~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAF-PVCRPCYEYERKD-GNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCC-ccccchhhhhhhc-CCccCCccCCchh
Confidence 47999999975 456678888 5999998544443 5799999998765
No 134
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=45.41 E-value=15 Score=46.83 Aligned_cols=46 Identities=33% Similarity=0.703 Sum_probs=34.8
Q ss_pred Ccccccccccc-------eeeeecCCCcccccchHhHHHhHhCCCccccccccCc
Q 003291 3 DSCAVCADTLE-------WVAYGGCGHREVCSTCVARLRFICQDRRCCICKTENN 50 (833)
Q Consensus 3 ~~C~IC~e~~~-------~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~ 50 (833)
.+|.||-|.+. ++|...|+- +||..|.--=|. -....||.|++--.
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~f-pvCr~cyeye~~-~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGF-PVCKPCYEYERS-EGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCC-ccccchhhhhhh-cCCccCCccCCchh
Confidence 47999999975 456678888 599999843333 35789999998765
No 135
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.85 E-value=4.2 Score=42.39 Aligned_cols=51 Identities=24% Similarity=0.404 Sum_probs=34.8
Q ss_pred cccccccCCCCCCCCCCCcccccccChhhhhcccccccCccccCcccCCCccccccccccCHHHHHHHHhc
Q 003291 106 CRLSCSVCDNMEGPNDGSKRRARFRNIEQLKGHLFHRHKLLMCSLCLEGRKVFICEQKLYTRAQLNQHINS 176 (833)
Q Consensus 106 ~~~~C~~C~k~~~~~~g~~~~~~F~s~~~Lk~Hlr~~H~~~~C~iC~k~~KvF~~E~~fyt~~~L~~H~r~ 176 (833)
..+.|++-+. .+.|.+..+.+.|..+-|. ..|..|.+ .|-+...|..|+..
T Consensus 78 ~~~~cqvagc----------~~~~d~lD~~E~hY~~~h~-~sCs~C~r---------~~Pt~hLLd~HI~E 128 (253)
T KOG4173|consen 78 PAFACQVAGC----------CQVFDALDDYEHHYHTLHG-NSCSFCKR---------AFPTGHLLDAHILE 128 (253)
T ss_pred ccccccccch----------HHHHhhhhhHHHhhhhccc-chhHHHHH---------hCCchhhhhHHHHH
Confidence 3566776333 3388888888888765554 36888877 77777778888763
No 136
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=43.72 E-value=9.9 Score=47.07 Aligned_cols=24 Identities=21% Similarity=0.628 Sum_probs=18.4
Q ss_pred CCCCCCCCCCccCCchhHhhhccCCcccCCCCCCc
Q 003291 193 GHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQ 227 (833)
Q Consensus 193 ~h~~C~~C~k~F~~~~~L~~Hmrekhf~C~iC~k~ 227 (833)
+...|.+|+.. ...|+.|..|+..
T Consensus 461 ~~L~CH~Cg~~-----------~~~p~~Cp~Cgs~ 484 (730)
T COG1198 461 GQLRCHYCGYQ-----------EPIPQSCPECGSE 484 (730)
T ss_pred CeeEeCCCCCC-----------CCCCCCCCCCCCC
Confidence 45789999844 3578899999975
No 137
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=43.22 E-value=17 Score=41.33 Aligned_cols=76 Identities=20% Similarity=0.421 Sum_probs=49.1
Q ss_pred hcccccccCCCCCCCCCCCcccccccChhhhhcccccccCccccCcccCCCccccccccc-cCHHHHHHHHhcCCCCCCC
Q 003291 105 MCRLSCSVCDNMEGPNDGSKRRARFRNIEQLKGHLFHRHKLLMCSLCLEGRKVFICEQKL-YTRAQLNQHINSGDSVVDG 183 (833)
Q Consensus 105 l~~~~C~~C~k~~~~~~g~~~~~~F~s~~~Lk~Hlr~~H~~~~C~iC~k~~KvF~~E~~f-yt~~~L~~H~r~h~~e~~g 183 (833)
+.+-.|-.|++ .|.+...-..||..+|+.|.=++ .+ .....|..-+..--+
T Consensus 164 ~~Pt~CLfC~~------------~~k~~e~~~~HM~~~HgffIPdr------------eYL~D~~GLl~YLgeKV~---- 215 (390)
T KOG2785|consen 164 LIPTDCLFCDK------------KSKSLEENLKHMFKEHGFFIPDR------------EYLTDEKGLLKYLGEKVG---- 215 (390)
T ss_pred cCCcceeecCC------------CcccHHHHHHHHhhccCCcCCch------------HhhhchhHHHHHHHHHhc----
Confidence 34577889998 78888889999988888654322 21 222334333332111
Q ss_pred CcccCCCCCCCCCCCCCC---CccCCchhHhhhccCC
Q 003291 184 TESERGGFMGHPMCEFCR---TPFYGDNELYTHMSTE 217 (833)
Q Consensus 184 ~~~~~~g~~~h~~C~~C~---k~F~~~~~L~~Hmrek 217 (833)
.-+.|-+|. +.|++-.....||..+
T Consensus 216 ---------~~~~CL~CN~~~~~f~sleavr~HM~~K 243 (390)
T KOG2785|consen 216 ---------IGFICLFCNELGRPFSSLEAVRAHMRDK 243 (390)
T ss_pred ---------cCceEEEeccccCcccccHHHHHHHhhc
Confidence 236788888 8888888888888743
No 138
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=42.59 E-value=13 Score=41.42 Aligned_cols=40 Identities=30% Similarity=0.835 Sum_probs=31.3
Q ss_pred cccccccccceeeeecC--CCcccccchHhHHHhHhCCCccccccccCc
Q 003291 4 SCAVCADTLEWVAYGGC--GHREVCSTCVARLRFICQDRRCCICKTENN 50 (833)
Q Consensus 4 ~C~IC~e~~~~~a~~~C--~H~~~C~~C~lRLR~L~~~k~CpiCrte~~ 50 (833)
.|.||++.+..-.. .| +|. +|..|-.+++ ..||.|+-++.
T Consensus 50 eCPvC~~~l~~Pi~-QC~nGHl-aCssC~~~~~-----~~CP~Cr~~~g 91 (299)
T KOG3002|consen 50 DCPVCFNPLSPPIF-QCDNGHL-ACSSCRTKVS-----NKCPTCRLPIG 91 (299)
T ss_pred cCchhhccCcccce-ecCCCcE-ehhhhhhhhc-----ccCCccccccc
Confidence 59999999975544 45 585 8999998664 56999998775
No 139
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=42.40 E-value=16 Score=32.68 Aligned_cols=46 Identities=28% Similarity=0.615 Sum_probs=19.7
Q ss_pred Cccccccccccee-------eeecCCCcccccchHhHHHhHhCCCccccccccCc
Q 003291 3 DSCAVCADTLEWV-------AYGGCGHREVCSTCVARLRFICQDRRCCICKTENN 50 (833)
Q Consensus 3 ~~C~IC~e~~~~~-------a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~ 50 (833)
.+|-||-+.+... |...|+- ++|..|.-.=|. -....||-|++.-.
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~f-PvCr~CyEYErk-eg~q~CpqCkt~yk 62 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAF-PVCRPCYEYERK-EGNQVCPQCKTRYK 62 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS------HHHHHHHHH-TS-SB-TTT--B--
T ss_pred cccccccCccccCCCCCEEEEEcccCC-ccchhHHHHHhh-cCcccccccCCCcc
Confidence 4799999997654 4457877 588888754443 36799999996543
No 140
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.35 E-value=12 Score=40.96 Aligned_cols=45 Identities=22% Similarity=0.631 Sum_probs=35.7
Q ss_pred Cccccccccccee------eeecCCCcccccchHhHHHhHhCCCccccccccC
Q 003291 3 DSCAVCADTLEWV------AYGGCGHREVCSTCVARLRFICQDRRCCICKTEN 49 (833)
Q Consensus 3 ~~C~IC~e~~~~~------a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~ 49 (833)
..|.||-++..+. .+..|+|. +|..|+.+|-.-+. ..||+||..-
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~-~c~~c~~~l~~~~~-i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHT-ICQNCASKLLGNSR-ILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCce-ehHhHHHHHhcCce-eeccCCCCcc
Confidence 3699999988776 23479996 99999999976544 5569999885
No 141
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=41.28 E-value=18 Score=35.20 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=19.7
Q ss_pred CCCCCCCCccCCchhHhhhccCCcccCCCCCCc
Q 003291 195 PMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQ 227 (833)
Q Consensus 195 ~~C~~C~k~F~~~~~L~~Hmrekhf~C~iC~k~ 227 (833)
..|.-|+++||+. ++.|..|..|+..
T Consensus 10 r~Cp~cg~kFYDL-------nk~p~vcP~cg~~ 35 (129)
T TIGR02300 10 RICPNTGSKFYDL-------NRRPAVSPYTGEQ 35 (129)
T ss_pred ccCCCcCcccccc-------CCCCccCCCcCCc
Confidence 5899999999863 3467777777765
No 142
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=40.47 E-value=38 Score=40.03 Aligned_cols=75 Identities=17% Similarity=0.260 Sum_probs=54.8
Q ss_pred HHHHHHhhc--CChhHHHHHHHHHHhhccCCcChHHHH-HHHHHhh---------hhhhHHHHHhhCCChHHHHHHHHHH
Q 003291 569 VERMRAAFE--YDEDKYTAFKDITAQYRQGLIDTRKYL-EYVKQYG---------LSHLVLELARLCPDALKQKELIETY 636 (833)
Q Consensus 569 vekir~~L~--~d~~~f~~Fk~~s~~~r~G~i~~~~y~-~~~~~~g---------l~~lv~ela~LlPd~~K~~eL~~~~ 636 (833)
|+.|.. |+ .+++.--..+.+.+.|+.|+|+..+.. +-...|+ |+++|||+-.|.|...+. ||.+|
T Consensus 112 ~~~i~~-~g~~~~~~~~e~lr~~lh~ykkg~idgddl~~eia~~l~~~d~~~~~ild~vfpefk~l~p~s~~~--lLRTH 188 (533)
T TIGR00470 112 IEIIEN-LGIDIDDEKKERLREVFHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETVFPEFKDLKPESTTL--TLRSH 188 (533)
T ss_pred HHHHHH-hCCCCChhHHHHHHHHHHHhhcCCCccchhHHHHHHhhCCchHHHHHHHHHhChhhhhcChHhhCc--ccccC
Confidence 444445 44 356667788899999999999999987 5444454 558999999999998765 78888
Q ss_pred HhhhccCccc
Q 003291 637 NATLQGNNQL 646 (833)
Q Consensus 637 ~~~~~~~~~~ 646 (833)
-+...+..+.
T Consensus 189 TTpgqirtL~ 198 (533)
T TIGR00470 189 MTSGWFITLS 198 (533)
T ss_pred ChhHHHHHHH
Confidence 7664443333
No 143
>PF10581 Synapsin_N: Synapsin N-terminal; InterPro: IPR019736 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represents a conserved octapeptide in the immediate N-terminal domain, which contains the phosphorylated serine residue.
Probab=39.64 E-value=15 Score=26.86 Aligned_cols=24 Identities=42% Similarity=0.585 Sum_probs=17.2
Q ss_pred cccccccCCchhhhhh------ccCCCCCC
Q 003291 772 KFHRVRLGDGSMAALL------DLKNSDTG 795 (833)
Q Consensus 772 ~~~~~~~g~~s~~~~~------~~~~~~~~ 795 (833)
.|||.||-|.+..+.| ||+.|++.
T Consensus 2 n~LrRRlSDs~f~~nLPnGYm~dl~rp~p~ 31 (32)
T PF10581_consen 2 NFLRRRLSDSNFMANLPNGYMSDLQRPDPP 31 (32)
T ss_pred cHHHhhhcchhhhhcCCcchhcccCCCCCC
Confidence 3899999999876654 55555543
No 144
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=39.59 E-value=19 Score=33.64 Aligned_cols=76 Identities=25% Similarity=0.396 Sum_probs=44.8
Q ss_pred CCCCCCCCCccCCchhHhhhccCCccc-CCC-CCCccCCcccccCChhHHHhhhc-----C------------CCccC--
Q 003291 194 HPMCEFCRTPFYGDNELYTHMSTEHYT-CHI-CQRQHPGQYEYYKNYDDLEIHFR-----R------------DHFLC-- 252 (833)
Q Consensus 194 h~~C~~C~k~F~~~~~L~~Hmrekhf~-C~i-C~k~~~~~~~yF~~~~~L~~H~r-----~------------kHy~C-- 252 (833)
-..|..|+....- .++..|++.+|.. ... .... .+++.....|..-.. . .=|.|
T Consensus 11 vlIC~~C~~av~~-~~v~~HL~~~H~~~~~~~~~~i----~~~~~~~~~l~~~~~~~~~p~~~~~Pi~gLp~~~G~~C~~ 85 (109)
T PF12013_consen 11 VLICRQCQYAVQP-SEVESHLRKRHHILKSQERQRI----VEAIRQWPDLLPDPDDLQIPPDPSPPIPGLPVYDGYRCQC 85 (109)
T ss_pred EEEeCCCCcccCc-hHHHHHHHHhcccccHHHHHHH----HHHHHhhhhcccCccccCCCCCCCCcCCCCCCCCCeeeec
Confidence 3579999887765 8899999966532 111 1100 111222222211110 0 22899
Q ss_pred --ChhhhccccccccCChHHHHHHHHHhhC
Q 003291 253 --EDEACLAKKFVVFQSEAEMKRHNAIEHG 280 (833)
Q Consensus 253 --~~~~C~k~kfvvF~s~~eLk~H~~~hHg 280 (833)
.. |.. ++.+...++.|...+||
T Consensus 86 ~~~~--C~y----~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 86 DPPH--CGY----ITRSKKTMRKHWRKEHG 109 (109)
T ss_pred CCCC--CCc----EeccHHHHHHHHHHhcC
Confidence 55 875 58999999999999997
No 145
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=39.39 E-value=19 Score=26.72 Aligned_cols=25 Identities=20% Similarity=0.711 Sum_probs=14.8
Q ss_pred CCCCCCCCccCCchhHhhhccCCcccCCCCCCc
Q 003291 195 PMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQ 227 (833)
Q Consensus 195 ~~C~~C~k~F~~~~~L~~Hmrekhf~C~iC~k~ 227 (833)
++|..||..+... +.++.|.+|+..
T Consensus 2 ~~C~~CGy~y~~~--------~~~~~CP~Cg~~ 26 (33)
T cd00350 2 YVCPVCGYIYDGE--------EAPWVCPVCGAP 26 (33)
T ss_pred EECCCCCCEECCC--------cCCCcCcCCCCc
Confidence 4677777555332 256677777653
No 146
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=38.92 E-value=20 Score=40.01 Aligned_cols=11 Identities=18% Similarity=0.760 Sum_probs=5.4
Q ss_pred CCCCCCCCCcc
Q 003291 194 HPMCEFCRTPF 204 (833)
Q Consensus 194 h~~C~~C~k~F 204 (833)
+..|.+|+..+
T Consensus 212 yL~CslC~teW 222 (309)
T PRK03564 212 YLHCNLCESEW 222 (309)
T ss_pred EEEcCCCCCcc
Confidence 44555555433
No 147
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=38.90 E-value=14 Score=45.22 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=17.1
Q ss_pred CCCCCCCCCccCCchhHhhhc
Q 003291 194 HPMCEFCRTPFYGDNELYTHM 214 (833)
Q Consensus 194 h~~C~~C~k~F~~~~~L~~Hm 214 (833)
+-.|+.|+..|.-.|-+..|+
T Consensus 678 qRKCP~Cn~aFganDv~~I~l 698 (698)
T KOG0978|consen 678 QRKCPKCNAAFGANDVHRIHL 698 (698)
T ss_pred cCCCCCCCCCCCcccccccCC
Confidence 458999999999888777664
No 148
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=38.86 E-value=31 Score=36.48 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=13.7
Q ss_pred CCCccccccccCceEEEe
Q 003291 38 QDRRCCICKTENNVVFVT 55 (833)
Q Consensus 38 ~~k~CpiCrte~~~V~~t 55 (833)
++..||+|.+++.+--|.
T Consensus 4 k~~~CPvC~~~F~~~~vr 21 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVR 21 (214)
T ss_pred CceECCCCCCeeeeeEEE
Confidence 467899999999754443
No 149
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.62 E-value=12 Score=33.12 Aligned_cols=18 Identities=33% Similarity=0.641 Sum_probs=9.5
Q ss_pred HHHhhhcCCCc-cCChhhhcc
Q 003291 240 DLEIHFRRDHF-LCEDEACLA 259 (833)
Q Consensus 240 ~L~~H~r~kHy-~C~~~~C~k 259 (833)
++..||...|+ .|+. |+.
T Consensus 23 dvvq~~~ddplt~ce~--c~a 41 (82)
T COG2331 23 DVVQAMTDDPLTTCEE--CGA 41 (82)
T ss_pred HHHHhcccCccccChh--hCh
Confidence 45555555553 3555 654
No 150
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=38.47 E-value=20 Score=35.25 Aligned_cols=46 Identities=30% Similarity=0.744 Sum_probs=34.9
Q ss_pred cccccccccceeee----ecCCCcccccchHhHHHhHhC-CCccccccccCc
Q 003291 4 SCAVCADTLEWVAY----GGCGHREVCSTCVARLRFICQ-DRRCCICKTENN 50 (833)
Q Consensus 4 ~C~IC~e~~~~~a~----~~C~H~~~C~~C~lRLR~L~~-~k~CpiCrte~~ 50 (833)
+|-||-|.....-. --|+- .+|..|...|.-.++ -..||+|+|...
T Consensus 82 eCnIC~etS~ee~FLKPneCCgY-~iCn~Cya~LWK~~~~ypvCPvCkTSFK 132 (140)
T PF05290_consen 82 ECNICKETSAEERFLKPNECCGY-SICNACYANLWKFCNLYPVCPVCKTSFK 132 (140)
T ss_pred eccCcccccchhhcCCcccccch-HHHHHHHHHHHHHcccCCCCCccccccc
Confidence 69999987533322 24665 599999999998877 578999999764
No 151
>PRK04860 hypothetical protein; Provisional
Probab=38.47 E-value=11 Score=38.03 Aligned_cols=30 Identities=20% Similarity=0.507 Sum_probs=15.4
Q ss_pred CCCCCCCCCccCCchhHhhhcc----CCcccCCCCCCc
Q 003291 194 HPMCEFCRTPFYGDNELYTHMS----TEHYTCHICQRQ 227 (833)
Q Consensus 194 h~~C~~C~k~F~~~~~L~~Hmr----ekhf~C~iC~k~ 227 (833)
+|.|. |++ ....+.+|++ +++|.|..|+..
T Consensus 119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~ 152 (160)
T PRK04860 119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGET 152 (160)
T ss_pred EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCce
Confidence 35565 655 3334445543 455666666554
No 152
>PRK14873 primosome assembly protein PriA; Provisional
Probab=37.29 E-value=19 Score=44.29 Aligned_cols=59 Identities=22% Similarity=0.444 Sum_probs=42.1
Q ss_pred cCCCCCCCCCCCCCCCccCC---chhHhhhccCCcccCCCCCCccCCcccccCChhHHHhhhcCCCccCChhhhcccccc
Q 003291 187 ERGGFMGHPMCEFCRTPFYG---DNELYTHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRRDHFLCEDEACLAKKFV 263 (833)
Q Consensus 187 ~~~g~~~h~~C~~C~k~F~~---~~~L~~Hmrekhf~C~iC~k~~~~~~~yF~~~~~L~~H~r~kHy~C~~~~C~k~kfv 263 (833)
.+.|+.....|.-|+..+.- ...|..|.......||.|+.. ..++.|+. |+...+.
T Consensus 376 nRrGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~-------------------~~p~~Cp~--Cgs~~l~ 434 (665)
T PRK14873 376 PRRGYVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRA-------------------APDWRCPR--CGSDRLR 434 (665)
T ss_pred cCCCCCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCC-------------------CcCccCCC--CcCCcce
Confidence 36777767789999876543 346777877777889999874 24789999 9876555
Q ss_pred ccC
Q 003291 264 VFQ 266 (833)
Q Consensus 264 vF~ 266 (833)
.+.
T Consensus 435 ~~g 437 (665)
T PRK14873 435 AVV 437 (665)
T ss_pred eee
Confidence 443
No 153
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=36.04 E-value=14 Score=42.77 Aligned_cols=41 Identities=22% Similarity=0.618 Sum_probs=29.3
Q ss_pred cccccccccceee----eecCCCcccccchHhHHHhHhCCCccccccccC
Q 003291 4 SCAVCADTLEWVA----YGGCGHREVCSTCVARLRFICQDRRCCICKTEN 49 (833)
Q Consensus 4 ~C~IC~e~~~~~a----~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~ 49 (833)
.|.||.|.++--. -..|+|. .=..|..+ ..+..||+||-..
T Consensus 177 TCpVCLERMD~s~~gi~t~~c~Hs-fh~~cl~~----w~~~scpvcR~~q 221 (493)
T KOG0804|consen 177 TCPVCLERMDSSTTGILTILCNHS-FHCSCLMK----WWDSSCPVCRYCQ 221 (493)
T ss_pred CcchhHhhcCccccceeeeecccc-cchHHHhh----cccCcChhhhhhc
Confidence 6999999987655 3499995 43345443 3688999998544
No 154
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=35.92 E-value=8.6 Score=40.97 Aligned_cols=47 Identities=26% Similarity=0.584 Sum_probs=34.9
Q ss_pred cccccccc------cceeeeecCCCcccccchHhHHHhHhCCCccc--cccccCceE
Q 003291 4 SCAVCADT------LEWVAYGGCGHREVCSTCVARLRFICQDRRCC--ICKTENNVV 52 (833)
Q Consensus 4 ~C~IC~e~------~~~~a~~~C~H~~~C~~C~lRLR~L~~~k~Cp--iCrte~~~V 52 (833)
-|.||-.. +.....-.|-|+ +|-.|+-|+=.+ ....|| -|.+.+-++
T Consensus 12 ~CPvCksDrYLnPdik~linPECyHr-mCESCvdRIFs~-GpAqCP~~gC~kILRK~ 66 (314)
T COG5220 12 RCPVCKSDRYLNPDIKILINPECYHR-MCESCVDRIFSR-GPAQCPYKGCGKILRKI 66 (314)
T ss_pred cCCccccccccCCCeEEEECHHHHHH-HHHHHHHHHhcC-CCCCCCCccHHHHHHHh
Confidence 69999765 233333349998 999999999655 678999 787777544
No 155
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=35.91 E-value=77 Score=35.86 Aligned_cols=9 Identities=22% Similarity=0.848 Sum_probs=5.8
Q ss_pred ccccccCCC
Q 003291 107 RLSCSVCDN 115 (833)
Q Consensus 107 ~~~C~~C~k 115 (833)
.|.|+.|+.
T Consensus 79 SftCPyC~~ 87 (381)
T KOG1280|consen 79 SFTCPYCGI 87 (381)
T ss_pred cccCCcccc
Confidence 566666665
No 156
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=34.52 E-value=80 Score=39.72 Aligned_cols=61 Identities=18% Similarity=0.297 Sum_probs=56.2
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhhccCCcChHHHHHHHHHhhhhh--hHHHHHhhCCChH
Q 003291 567 SLVERMRAAFEYDEDKYTAFKDITAQYRQGLIDTRKYLEYVKQYGLSH--LVLELARLCPDAL 627 (833)
Q Consensus 567 ~lvekir~~L~~d~~~f~~Fk~~s~~~r~G~i~~~~y~~~~~~~gl~~--lv~ela~LlPd~~ 627 (833)
..|.+|+..+..+.+.|..|.++...|+.-.-+..|.+.-|.++-.++ |.-|...+|||-.
T Consensus 274 ~~vnkVK~r~~~~pe~y~~fl~~Lrtyq~~qr~i~ev~~~Vt~lfa~~PdLleeFk~FLPd~~ 336 (1163)
T COG5602 274 IFVNKVKVRFQNNPEMYYDFLDSLRTYQMKQRSIQEVYARVTKLFAEAPDLLEEFKEFLPDSS 336 (1163)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhChHHHHHHHHhCcccc
Confidence 468999999999999999999999999999999999999999998874 8888999999854
No 157
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.18 E-value=28 Score=41.49 Aligned_cols=58 Identities=24% Similarity=0.445 Sum_probs=39.9
Q ss_pred CCCCCCCCCCCCCCCccC---CchhHhhhccCCcccCCCCCCccCCcccccCChhHHHhhhcCCCccCChhhhccccccc
Q 003291 188 RGGFMGHPMCEFCRTPFY---GDNELYTHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRRDHFLCEDEACLAKKFVV 264 (833)
Q Consensus 188 ~~g~~~h~~C~~C~k~F~---~~~~L~~Hmrekhf~C~iC~k~~~~~~~yF~~~~~L~~H~r~kHy~C~~~~C~k~kfvv 264 (833)
+.|+.....|..||.... -...|..|.......||.|+.. ..-+..|+. |+...+..
T Consensus 207 rrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~------------------~~~~~~Cp~--C~s~~l~~ 266 (505)
T TIGR00595 207 RRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQ------------------EPIPKTCPQ--CGSEDLVY 266 (505)
T ss_pred CCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCc------------------CCCCCCCCC--CCCCeeEe
Confidence 455555667888876543 2456777887788899999975 234678999 98764443
Q ss_pred c
Q 003291 265 F 265 (833)
Q Consensus 265 F 265 (833)
+
T Consensus 267 ~ 267 (505)
T TIGR00595 267 K 267 (505)
T ss_pred e
Confidence 3
No 158
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=34.17 E-value=9.2 Score=42.06 Aligned_cols=33 Identities=21% Similarity=0.585 Sum_probs=11.5
Q ss_pred CCCCCCCCCCccCCchhHhhhccCCcccCCCCCCccCCccccc
Q 003291 193 GHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQHPGQYEYY 235 (833)
Q Consensus 193 ~h~~C~~C~k~F~~~~~L~~Hmrekhf~C~iC~k~~~~~~~yF 235 (833)
++..|.+|+..+. . ....|..|+.....+..||
T Consensus 196 R~L~Cs~C~t~W~--------~--~R~~Cp~Cg~~~~~~l~~~ 228 (290)
T PF04216_consen 196 RYLHCSLCGTEWR--------F--VRIKCPYCGNTDHEKLEYF 228 (290)
T ss_dssp EEEEETTT--EEE------------TTS-TTT---SS-EEE--
T ss_pred EEEEcCCCCCeee--------e--cCCCCcCCCCCCCcceeeE
Confidence 3455666665441 1 1245777766644444444
No 159
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=33.54 E-value=14 Score=37.25 Aligned_cols=38 Identities=16% Similarity=0.566 Sum_probs=22.0
Q ss_pred CCCCCCCcc---CCchhHhh--hccCCcccCCCCCCccCCcccccCChhHH
Q 003291 196 MCEFCRTPF---YGDNELYT--HMSTEHYTCHICQRQHPGQYEYYKNYDDL 241 (833)
Q Consensus 196 ~C~~C~k~F---~~~~~L~~--Hmrekhf~C~iC~k~~~~~~~yF~~~~~L 241 (833)
.|++|+..+ .+...+.. +++ ++++|.-|+++ |..+..+
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~-~~~~c~~c~~~-------f~~~e~~ 44 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIR-RRRECLACGKR-------FTTFERV 44 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCcee-eeeeccccCCc-------ceEeEec
Confidence 688888655 22222222 333 34888888887 6665544
No 160
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=33.11 E-value=18 Score=40.06 Aligned_cols=29 Identities=17% Similarity=0.481 Sum_probs=15.4
Q ss_pred CCccCChhhhccccccccCChHHHHHHHHHhhC
Q 003291 248 DHFLCEDEACLAKKFVVFQSEAEMKRHNAIEHG 280 (833)
Q Consensus 248 kHy~C~~~~C~k~kfvvF~s~~eLk~H~~~hHg 280 (833)
.++.|....|... |.....|..|++.|..
T Consensus 415 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 443 (467)
T COG5048 415 RPYNCKNPPCSKS----FNRHYNLIPHKKIHTN 443 (467)
T ss_pred CCcCCCCCcchhh----ccCccccccccccccc
Confidence 3333333336543 6666666666665544
No 161
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=32.02 E-value=19 Score=37.07 Aligned_cols=30 Identities=20% Similarity=0.418 Sum_probs=22.1
Q ss_pred CCCCCCCCCCccCCchhHhhhccCCcccCCCCCCc
Q 003291 193 GHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQ 227 (833)
Q Consensus 193 ~h~~C~~C~k~F~~~~~L~~Hmrekhf~C~iC~k~ 227 (833)
.-|.|+.|+.+|.-.+.+. .-|.|+.|+..
T Consensus 116 ~~Y~Cp~C~~rytf~eA~~-----~~F~Cp~Cg~~ 145 (178)
T PRK06266 116 MFFFCPNCHIRFTFDEAME-----YGFRCPQCGEM 145 (178)
T ss_pred CEEECCCCCcEEeHHHHhh-----cCCcCCCCCCC
Confidence 3478888888887776653 35888888865
No 162
>PF13821 DUF4187: Domain of unknown function (DUF4187)
Probab=31.97 E-value=26 Score=29.24 Aligned_cols=28 Identities=32% Similarity=0.656 Sum_probs=15.0
Q ss_pred HhhhccCCcccCCCCCCccCCcccccCChhHHHhh
Q 003291 210 LYTHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIH 244 (833)
Q Consensus 210 L~~Hmrekhf~C~iC~k~~~~~~~yF~~~~~L~~H 244 (833)
|..++|..|+-|-.|+.. |.+..+|..|
T Consensus 19 l~~YLR~~~~YC~~Cg~~-------Y~d~~dL~~~ 46 (55)
T PF13821_consen 19 LLSYLREEHNYCFWCGTK-------YDDEEDLERN 46 (55)
T ss_pred HHHHHHhhCceeeeeCCc-------cCCHHHHHhC
Confidence 444555555555555555 5555555443
No 163
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=31.97 E-value=20 Score=38.64 Aligned_cols=46 Identities=20% Similarity=0.407 Sum_probs=34.1
Q ss_pred cccCcccCCCccccccccccCHHHHHHHHhcCCCCCCCCcccCCCCCCCCCCCCCCCccCCchhHhhhcc
Q 003291 146 LMCSLCLEGRKVFICEQKLYTRAQLNQHINSGDSVVDGTESERGGFMGHPMCEFCRTPFYGDNELYTHMS 215 (833)
Q Consensus 146 ~~C~iC~k~~KvF~~E~~fyt~~~L~~H~r~h~~e~~g~~~~~~g~~~h~~C~~C~k~F~~~~~L~~Hmr 215 (833)
|.|.+|+. . .-+..|.+|+.+-++. -|.|--|++.|.+ ..+..|..
T Consensus 4 FtCnvCgE---------s-vKKp~vekH~srCrn~-------------~fSCIDC~k~F~~-~sYknH~k 49 (276)
T KOG2186|consen 4 FTCNVCGE---------S-VKKPQVEKHMSRCRNA-------------YFSCIDCGKTFER-VSYKNHTK 49 (276)
T ss_pred Eehhhhhh---------h-ccccchHHHHHhccCC-------------eeEEeeccccccc-chhhhhhh
Confidence 67999986 2 3356788898875542 4789999999988 66777765
No 164
>PRK05580 primosome assembly protein PriA; Validated
Probab=31.76 E-value=41 Score=41.57 Aligned_cols=62 Identities=23% Similarity=0.372 Sum_probs=40.9
Q ss_pred CCCCCCCCCCCCCCCccC---CchhHhhhccCCcccCCCCCCccCCcccccCChhHHHhhhcCCCccCChhhhccccccc
Q 003291 188 RGGFMGHPMCEFCRTPFY---GDNELYTHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRRDHFLCEDEACLAKKFVV 264 (833)
Q Consensus 188 ~~g~~~h~~C~~C~k~F~---~~~~L~~Hmrekhf~C~iC~k~~~~~~~yF~~~~~L~~H~r~kHy~C~~~~C~k~kfvv 264 (833)
+.|+.....|..|+..+. -...|..|.......||.|+.. ...+..|+. |+...+..
T Consensus 375 rrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~------------------~~~~~~Cp~--Cg~~~l~~ 434 (679)
T PRK05580 375 RRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQ------------------EPIPKACPE--CGSTDLVP 434 (679)
T ss_pred CCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCC------------------CCCCCCCCC--CcCCeeEE
Confidence 455566677888886543 2346777777777889999875 234678999 98765444
Q ss_pred cCChH
Q 003291 265 FQSEA 269 (833)
Q Consensus 265 F~s~~ 269 (833)
+....
T Consensus 435 ~g~G~ 439 (679)
T PRK05580 435 VGPGT 439 (679)
T ss_pred eeccH
Confidence 44333
No 165
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=31.63 E-value=53 Score=36.66 Aligned_cols=74 Identities=18% Similarity=0.267 Sum_probs=46.4
Q ss_pred CCCCCCCCCccCCchhHhhhcc----CCcccCCC----CCCccCCcccccCChhHHHhhhcC---CCccCChh--hhccc
Q 003291 194 HPMCEFCRTPFYGDNELYTHMS----TEHYTCHI----CQRQHPGQYEYYKNYDDLEIHFRR---DHFLCEDE--ACLAK 260 (833)
Q Consensus 194 h~~C~~C~k~F~~~~~L~~Hmr----ekhf~C~i----C~k~~~~~~~yF~~~~~L~~H~r~---kHy~C~~~--~C~k~ 260 (833)
+..|++|...+... .-.+|. ...+.|.. |.+. |..... ..|.+. .+|.|+.+ .|..
T Consensus 80 ~~~CP~Cr~~~g~~--R~~amEkV~e~~~vpC~~~~~GC~~~-------~~Y~~~-~~HE~~C~f~~~~CP~p~~~C~~- 148 (299)
T KOG3002|consen 80 SNKCPTCRLPIGNI--RCRAMEKVAEAVLVPCKNAKLGCTKS-------FPYGEK-SKHEKVCEFRPCSCPVPGAECKY- 148 (299)
T ss_pred cccCCccccccccH--HHHHHHHHHHhceecccccccCCcee-------eccccc-cccccccccCCcCCCCCcccCCc-
Confidence 45788888777643 333333 33455553 5544 333333 667765 78999988 7863
Q ss_pred cccccCChHHHHHHHHHhhCCC
Q 003291 261 KFVVFQSEAEMKRHNAIEHGGR 282 (833)
Q Consensus 261 kfvvF~s~~eLk~H~~~hHg~~ 282 (833)
-..-.+|..|....|...
T Consensus 149 ----~G~~~~l~~H~~~~hk~~ 166 (299)
T KOG3002|consen 149 ----TGSYKDLYAHLNDTHKSD 166 (299)
T ss_pred ----cCcHHHHHHHHHhhChhh
Confidence 355678999998887764
No 166
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=31.57 E-value=1e+02 Score=25.48 Aligned_cols=48 Identities=21% Similarity=0.218 Sum_probs=40.0
Q ss_pred CChhHHHHHHHHHHhhccCCcChHHHHHHHHHhhhhhhHHHHHhhCCC
Q 003291 578 YDEDKYTAFKDITAQYRQGLIDTRKYLEYVKQYGLSHLVLELARLCPD 625 (833)
Q Consensus 578 ~d~~~f~~Fk~~s~~~r~G~i~~~~y~~~~~~~gl~~lv~ela~LlPd 625 (833)
+|.++-.....+..-|-+|.|+..||-+.+...--..-.-||..|+-|
T Consensus 4 sd~dR~~~~~~L~~a~a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~~D 51 (53)
T PF08044_consen 4 SDADRERAVDLLRAAFAEGRLSLDEFDERLDAAYAARTRGELDALFAD 51 (53)
T ss_pred cHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCcHHHHHHHHcc
Confidence 366777888889999999999999999999888877777777777644
No 167
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=31.15 E-value=22 Score=35.84 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=23.8
Q ss_pred CCCCCCCCCCccCCchhHhhhccCCcccCCCCCCc
Q 003291 193 GHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQ 227 (833)
Q Consensus 193 ~h~~C~~C~k~F~~~~~L~~Hmrekhf~C~iC~k~ 227 (833)
.-|.|+.|+.+|...+.+. .-|.|+.|+..
T Consensus 108 ~~Y~Cp~c~~r~tf~eA~~-----~~F~Cp~Cg~~ 137 (158)
T TIGR00373 108 MFFICPNMCVRFTFNEAME-----LNFTCPRCGAM 137 (158)
T ss_pred CeEECCCCCcEeeHHHHHH-----cCCcCCCCCCE
Confidence 3588999999988877775 36899999875
No 168
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=30.80 E-value=1.9e+02 Score=25.42 Aligned_cols=52 Identities=12% Similarity=0.291 Sum_probs=39.6
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhhccCCcChHHHHHHHHHh-hhhhhHHHHHh
Q 003291 567 SLVERMRAAFEYDEDKYTAFKDITAQYRQGLIDTRKYLEYVKQY-GLSHLVLELAR 621 (833)
Q Consensus 567 ~lvekir~~L~~d~~~f~~Fk~~s~~~r~G~i~~~~y~~~~~~~-gl~~lv~ela~ 621 (833)
.|+..|+..|. .+.....-..-.+||.++|+-.+++..+.++ | +.|.-+.+.
T Consensus 13 ~L~~~l~~~l~--~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG-D~lL~s~I~ 65 (70)
T PF12174_consen 13 MLFSALSKHLP--PSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG-DQLLRSAIK 65 (70)
T ss_pred HHHHHHHHHCC--HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHH
Confidence 46888888995 5556666667788999999999999999888 7 655555443
No 169
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=29.30 E-value=41 Score=38.96 Aligned_cols=34 Identities=18% Similarity=0.403 Sum_probs=19.8
Q ss_pred CCCCCCCCCCccCCchhHhhhcc-CCcccCCCCCC
Q 003291 193 GHPMCEFCRTPFYGDNELYTHMS-TEHYTCHICQR 226 (833)
Q Consensus 193 ~h~~C~~C~k~F~~~~~L~~Hmr-ekhf~C~iC~k 226 (833)
.+|.|++|.+.|.+-+.|.---. .--|.|..|+-
T Consensus 127 ~~Y~Cp~C~kkyt~Lea~~L~~~~~~~F~C~~C~g 161 (436)
T KOG2593|consen 127 AGYVCPNCQKKYTSLEALQLLDNETGEFHCENCGG 161 (436)
T ss_pred ccccCCccccchhhhHHHHhhcccCceEEEecCCC
Confidence 45777777777766655543322 34466666654
No 170
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.50 E-value=93 Score=35.14 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=49.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhccCCcChHHHHHHHHHhhh
Q 003291 552 SQPAPSVENIQAANRSLVERMRAAFEYDEDKYTAFKDITAQYRQGLIDTRKYLEYVKQYGL 612 (833)
Q Consensus 552 ~~~~~~~~~~~~~nk~lvekir~~L~~d~~~f~~Fk~~s~~~r~G~i~~~~y~~~~~~~gl 612 (833)
+-..+++|+....-..|++-|-+.+-.|-.--.+...+-..||+|.|+-.+||..|..|.=
T Consensus 285 n~~~~~~D~~~~~~~~l~kq~l~~~A~d~aieD~i~~L~~~~r~G~i~l~~yLr~VR~lsR 345 (365)
T KOG2391|consen 285 NLEALDIDEAIECTAPLYKQILECYALDLAIEDAIYSLGKSLRDGVIDLDQYLRHVRLLSR 345 (365)
T ss_pred cCcCCCchhhhhccchHHHHHHHhhhhhhHHHHHHHHHHHHHhcCeeeHHHHHHHHHHHHH
Confidence 3567788888888888888888888777677777778888999999999999999976643
No 171
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=27.97 E-value=42 Score=37.51 Aligned_cols=25 Identities=24% Similarity=0.675 Sum_probs=14.0
Q ss_pred CCCCCCCCCCccCCchhHhhhccCCcccCCCCCCc
Q 003291 193 GHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQ 227 (833)
Q Consensus 193 ~h~~C~~C~k~F~~~~~L~~Hmrekhf~C~iC~k~ 227 (833)
+...|.+|+..+ |+. .-+|..|+..
T Consensus 209 RyL~CslC~teW--------~~~--R~~C~~Cg~~ 233 (305)
T TIGR01562 209 RYLSCSLCATEW--------HYV--RVKCSHCEES 233 (305)
T ss_pred eEEEcCCCCCcc--------ccc--CccCCCCCCC
Confidence 355677776544 211 3467777764
No 172
>PLN02195 cellulose synthase A
Probab=27.00 E-value=37 Score=43.25 Aligned_cols=45 Identities=22% Similarity=0.552 Sum_probs=35.0
Q ss_pred cccccccccc-------eeeeecCCCcccccchHhHHHhHhCCCccccccccCc
Q 003291 4 SCAVCADTLE-------WVAYGGCGHREVCSTCVARLRFICQDRRCCICKTENN 50 (833)
Q Consensus 4 ~C~IC~e~~~-------~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~~ 50 (833)
.|.||-+.+. ++|...|+- +||..|.-.=|.- ....||-|++.-.
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~-pvCrpCyeyer~e-g~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSY-PLCKACLEYEIKE-GRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCC-ccccchhhhhhhc-CCccCCccCCccc
Confidence 7999999654 466778988 5999998544443 5799999998765
No 173
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=26.85 E-value=31 Score=32.77 Aligned_cols=29 Identities=28% Similarity=0.481 Sum_probs=24.8
Q ss_pred ccccchHhHHHhHhCCCc-cccccccCceE
Q 003291 24 EVCSTCVARLRFICQDRR-CCICKTENNVV 52 (833)
Q Consensus 24 ~~C~~C~lRLR~L~~~k~-CpiCrte~~~V 52 (833)
-+|..|..|+-.|.++.. ||+|-++.+.-
T Consensus 10 R~Cp~CG~kFYDLnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 10 RTCPSCGAKFYDLNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCcchhccCCCCCccCCCCCCccCcc
Confidence 389999999999988655 99999998754
No 174
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=26.26 E-value=30 Score=38.42 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=34.8
Q ss_pred cccccccccceeeeecCCCcccccchHhHHHhHhCCCccccccccC
Q 003291 4 SCAVCADTLEWVAYGGCGHREVCSTCVARLRFICQDRRCCICKTEN 49 (833)
Q Consensus 4 ~C~IC~e~~~~~a~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~ 49 (833)
-|++|++.-.+.++.+|+|..+|.+|.-..=+ -+...|+||.+..
T Consensus 138 ~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~-kra~s~eie~ta~ 182 (394)
T KOG2113|consen 138 KRIQQFTNTYIATPVRCGEPVFCVTGAPKNCV-KRARSCEIEQTAV 182 (394)
T ss_pred chheecccceEeeeccCCCceEEEecCCcchh-hhccccchhhhhh
Confidence 49999999999999999999889999544321 1234599998765
No 175
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=25.20 E-value=49 Score=36.79 Aligned_cols=46 Identities=28% Similarity=0.633 Sum_probs=31.8
Q ss_pred CCccccccccccee-------------------eeecCCCcccccchHhHHHhHhC--------CCccccccccC
Q 003291 2 DDSCAVCADTLEWV-------------------AYGGCGHREVCSTCVARLRFICQ--------DRRCCICKTEN 49 (833)
Q Consensus 2 ~~~C~IC~e~~~~~-------------------a~~~C~H~~~C~~C~lRLR~L~~--------~k~CpiCrte~ 49 (833)
+..|.+|-..-.++ ++.||+| ||..=.++...--. +..||+|-+.+
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGH--v~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L 413 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGH--VCSEKTVKYWSQIPLPHGTHAFHAACPFCATQL 413 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCccc--ccchhhhhHhhcCcCCCccccccccCcchhhhh
Confidence 34688887643333 3359999 78887777654332 57899998776
No 176
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=24.82 E-value=42 Score=37.25 Aligned_cols=79 Identities=23% Similarity=0.484 Sum_probs=50.7
Q ss_pred CCCCCCCCccCCchhHhhhcc-CCcccCCCCCCccCCcccccCChhHHHh--hhcCCCccCChhh-hccccccccCChHH
Q 003291 195 PMCEFCRTPFYGDNELYTHMS-TEHYTCHICQRQHPGQYEYYKNYDDLEI--HFRRDHFLCEDEA-CLAKKFVVFQSEAE 270 (833)
Q Consensus 195 ~~C~~C~k~F~~~~~L~~Hmr-ekhf~C~iC~k~~~~~~~yF~~~~~L~~--H~r~kHy~C~~~~-C~k~kfvvF~s~~e 270 (833)
+-|..|++-.. .|--|. =+|-.|-.|-+.++.+.-+..+..-++. -++..-|.|.... |.+. |-++.+
T Consensus 91 HfCd~Cd~PI~----IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~VqrIeq~~~g~iFmC~~~~GC~RT----yLsqrD 162 (389)
T KOG2932|consen 91 HFCDRCDFPIA----IYGRMIPCKHVFCLECARSDSDKICPLCDDRVQRIEQIMMGGIFMCAAPHGCLRT----YLSQRD 162 (389)
T ss_pred EeecccCCcce----eeecccccchhhhhhhhhcCccccCcCcccHHHHHHHhcccceEEeecchhHHHH----HhhHHH
Confidence 46888886532 122232 5677788787765444444444333333 2344679999854 9875 999999
Q ss_pred HHHHHHHhhCC
Q 003291 271 MKRHNAIEHGG 281 (833)
Q Consensus 271 Lk~H~~~hHg~ 281 (833)
|++|+.-.|+.
T Consensus 163 lqAHInhrH~~ 173 (389)
T KOG2932|consen 163 LQAHINHRHGS 173 (389)
T ss_pred HHHHhhhhhcc
Confidence 99999887874
No 177
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.70 E-value=44 Score=39.82 Aligned_cols=24 Identities=25% Similarity=0.582 Sum_probs=17.9
Q ss_pred CCCCCCCCCCccCCchhHhhhccCCcccCCCCCCc
Q 003291 193 GHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQ 227 (833)
Q Consensus 193 ~h~~C~~C~k~F~~~~~L~~Hmrekhf~C~iC~k~ 227 (833)
....|.+||... ..+..|..|+..
T Consensus 239 ~~l~Ch~Cg~~~-----------~~~~~Cp~C~s~ 262 (505)
T TIGR00595 239 GKLRCHYCGYQE-----------PIPKTCPQCGSE 262 (505)
T ss_pred CeEEcCCCcCcC-----------CCCCCCCCCCCC
Confidence 456899998554 456789999874
No 178
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=23.90 E-value=24 Score=39.03 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=21.9
Q ss_pred cccccccccceeeeecCCCcccccchHhHH
Q 003291 4 SCAVCADTLEWVAYGGCGHREVCSTCVARL 33 (833)
Q Consensus 4 ~C~IC~e~~~~~a~~~C~H~~~C~~C~lRL 33 (833)
+|.+|+..-..+.+++|.|. +=..|..|.
T Consensus 120 ICLygfa~~~~ft~T~C~Hy-~H~~ClaRy 148 (368)
T KOG4445|consen 120 ICLYGFASSPAFTVTACDHY-MHFACLARY 148 (368)
T ss_pred EEEEeecCCCceeeehhHHH-HHHHHHHHH
Confidence 36666778888999999997 655676664
No 179
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]
Probab=23.55 E-value=31 Score=33.32 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=13.2
Q ss_pred CCCCCCCCCCccCCchhHhhhcc
Q 003291 193 GHPMCEFCRTPFYGDNELYTHMS 215 (833)
Q Consensus 193 ~h~~C~~C~k~F~~~~~L~~Hmr 215 (833)
++|.|-.|.+.|.+...|..|.+
T Consensus 56 GqfyCi~CaRyFi~~~~l~~H~k 78 (129)
T KOG3408|consen 56 GQFYCIECARYFIDAKALKTHFK 78 (129)
T ss_pred ceeehhhhhhhhcchHHHHHHHh
Confidence 45556666666655555555544
No 180
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=23.42 E-value=35 Score=36.94 Aligned_cols=44 Identities=30% Similarity=0.637 Sum_probs=30.8
Q ss_pred ccCCCCCCccCCcccccCChhHHHhhhcCC---CccCChhhhccccccccCChHHHHHHHHH
Q 003291 219 YTCHICQRQHPGQYEYYKNYDDLEIHFRRD---HFLCEDEACLAKKFVVFQSEAEMKRHNAI 277 (833)
Q Consensus 219 f~C~iC~k~~~~~~~yF~~~~~L~~H~r~k---Hy~C~~~~C~k~kfvvF~s~~eLk~H~~~ 277 (833)
|.|.+|+-. .-...|++|+-.. -|.|-+ |+.. |.. .+++.|..-
T Consensus 4 FtCnvCgEs--------vKKp~vekH~srCrn~~fSCID--C~k~----F~~-~sYknH~kC 50 (276)
T KOG2186|consen 4 FTCNVCGES--------VKKPQVEKHMSRCRNAYFSCID--CGKT----FER-VSYKNHTKC 50 (276)
T ss_pred Eehhhhhhh--------ccccchHHHHHhccCCeeEEee--cccc----ccc-chhhhhhhh
Confidence 678888874 3455677787653 488888 8874 776 677777644
No 181
>PRK14873 primosome assembly protein PriA; Provisional
Probab=23.36 E-value=45 Score=41.22 Aligned_cols=23 Identities=26% Similarity=0.897 Sum_probs=17.1
Q ss_pred CCCCCCCCCCccCCchhHhhhccCCcccCCCCCCc
Q 003291 193 GHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQ 227 (833)
Q Consensus 193 ~h~~C~~C~k~F~~~~~L~~Hmrekhf~C~iC~k~ 227 (833)
+...|.+||.. ..++.|..|+..
T Consensus 409 ~~l~Ch~CG~~------------~~p~~Cp~Cgs~ 431 (665)
T PRK14873 409 GTPRCRWCGRA------------APDWRCPRCGSD 431 (665)
T ss_pred CeeECCCCcCC------------CcCccCCCCcCC
Confidence 45789999853 136799999875
No 182
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=22.54 E-value=17 Score=34.67 Aligned_cols=45 Identities=24% Similarity=0.563 Sum_probs=27.3
Q ss_pred Ccccccccccceee-----eecCCCcccccchHhHHHhHhCCCccccccccC
Q 003291 3 DSCAVCADTLEWVA-----YGGCGHREVCSTCVARLRFICQDRRCCICKTEN 49 (833)
Q Consensus 3 ~~C~IC~e~~~~~a-----~~~C~H~~~C~~C~lRLR~L~~~k~CpiCrte~ 49 (833)
..|.+|..++.... ...|.|+ ||..|.... .--..-.|.+|...-
T Consensus 55 ~~C~~C~~~fg~l~~~~~~C~~C~~~-VC~~C~~~~-~~~~~WlC~vC~k~r 104 (118)
T PF02318_consen 55 RHCARCGKPFGFLFNRGRVCVDCKHR-VCKKCGVYS-KKEPIWLCKVCQKQR 104 (118)
T ss_dssp SB-TTTS-BCSCTSTTCEEETTTTEE-EETTSEEET-SSSCCEEEHHHHHHH
T ss_pred cchhhhCCcccccCCCCCcCCcCCcc-ccCccCCcC-CCCCCEEChhhHHHH
Confidence 47999999865443 2478886 888888871 001234688886544
No 183
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=22.48 E-value=42 Score=38.74 Aligned_cols=34 Identities=24% Similarity=0.652 Sum_probs=27.8
Q ss_pred CCCc--ccccccccceeeeecCCCcccccchHhHHHh
Q 003291 1 MDDS--CAVCADTLEWVAYGGCGHREVCSTCVARLRF 35 (833)
Q Consensus 1 m~~~--C~IC~e~~~~~a~~~C~H~~~C~~C~lRLR~ 35 (833)
|+++ |.||..=.+.-.+.+|+|. .|-.|++.+-+
T Consensus 1 meeelkc~vc~~f~~epiil~c~h~-lc~~ca~~~~~ 36 (699)
T KOG4367|consen 1 MEEELKCPVCGSFYREPIILPCSHN-LCQACARNILV 36 (699)
T ss_pred CcccccCceehhhccCceEeecccH-HHHHHHHhhcc
Confidence 6665 9999988888888999995 99999985543
No 184
>KOG2272 consensus Focal adhesion protein PINCH-1, contains LIM domains [Signal transduction mechanisms; Cytoskeleton]
Probab=22.40 E-value=66 Score=34.84 Aligned_cols=60 Identities=27% Similarity=0.562 Sum_probs=33.7
Q ss_pred CCCCCCCCCCccCCchhHhhhcc---CCcc------cCCCCCCccCCcccccCChhHHHhhhcCCCccCChhhhcc
Q 003291 193 GHPMCEFCRTPFYGDNELYTHMS---TEHY------TCHICQRQHPGQYEYYKNYDDLEIHFRRDHFLCEDEACLA 259 (833)
Q Consensus 193 ~h~~C~~C~k~F~~~~~L~~Hmr---ekhf------~C~iC~k~~~~~~~yF~~~~~L~~H~r~kHy~C~~~~C~k 259 (833)
.|+.|..|.+.|..-..+.+-=. +.|| .|.+|++.- --.. -..|.+-+-...|.|.. |.+
T Consensus 220 eHFvCa~CekPFlGHrHYEkkGlaYCe~h~~qLfG~~CF~C~~~i--~G~v---v~al~KawCv~cf~Cs~--Cdk 288 (332)
T KOG2272|consen 220 EHFVCAKCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCFICNRVI--GGDV---VSALNKAWCVECFSCST--CDK 288 (332)
T ss_pred hheeehhcCCcccchhhhhhcCchhHHHHHHHHhhhhheecCCcc--CccH---HHHhhhhhccccccccc--ccc
Confidence 68999999999976543332111 3333 577777641 1011 13444444456777777 754
No 185
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=22.05 E-value=49 Score=24.83 Aligned_cols=25 Identities=24% Similarity=0.541 Sum_probs=15.8
Q ss_pred CCCCCCCCccCCchhHhhhccCCcccCCCCCCc
Q 003291 195 PMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQ 227 (833)
Q Consensus 195 ~~C~~C~k~F~~~~~L~~Hmrekhf~C~iC~k~ 227 (833)
++|..||..+... +.+..|.+|+..
T Consensus 3 ~~C~~CG~i~~g~--------~~p~~CP~Cg~~ 27 (34)
T cd00729 3 WVCPVCGYIHEGE--------EAPEKCPICGAP 27 (34)
T ss_pred EECCCCCCEeECC--------cCCCcCcCCCCc
Confidence 5788887655332 246678888763
No 186
>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]
Probab=22.03 E-value=91 Score=37.10 Aligned_cols=135 Identities=15% Similarity=0.151 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHhhccCCcChHHHH----HHHHHh--hhhhhHHH-HHhhCCChHHHHHHHHHH
Q 003291 564 ANRSLVERMRAAFEYDEDKYTAFKDITAQYRQGLIDTRKYL----EYVKQY--GLSHLVLE-LARLCPDALKQKELIETY 636 (833)
Q Consensus 564 ~nk~lvekir~~L~~d~~~f~~Fk~~s~~~r~G~i~~~~y~----~~~~~~--gl~~lv~e-la~LlPd~~K~~eL~~~~ 636 (833)
....||+..+.-...+.+.+..-+........+..+...+. ..+++| .|+.+|.| .+.|.=+..|...||
T Consensus 195 ~l~~l~~~cw~e~P~~rPs~~~i~~~~~~~~~~~~~~~nl~D~m~~~le~Y~~nLe~~v~eRt~~l~~e~~k~d~LL--- 271 (484)
T KOG1023|consen 195 ELLLLVARCWEEIPEKRPSIEQIRSKLLTINKGGSSKGNLMDSLFRMLESYADNLEKLVDERTAELEEEKKKTDTLL--- 271 (484)
T ss_pred HHHHHHHHhcccChhhCccHHHHHhhhhhhcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---
Confidence 44556666666665666666666654444444443322333 466666 47789999 777777777777777
Q ss_pred HhhhccCcccCCCccccccccccccCCCCCCCCccccccccCCCCCccccCCCChhh--HhhhhhHHHHHHHhhcCC
Q 003291 637 NATLQGNNQLDNDWAHISVRAKDTNGSKKSKGKSVATEACKNDKGKSTVANDSNSKH--AVANNFLSTVRELQSSFK 711 (833)
Q Consensus 637 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 711 (833)
+.++. ...+...|.|.. --++.-.....+|++.+||+.++..+++.. .+.+.++.++..+.+.+.
T Consensus 272 ~~mLP---------~~VA~~lk~G~~-v~pe~~~~vti~fsDiv~fT~l~~~~~P~~vv~~lNdlyt~Fd~ii~~~d 338 (484)
T KOG1023|consen 272 GQMLP---------KSVAESLKLGKT-VDPESFDSVTIYFSDIVGFTVLSSNSTPIQVVTLLNDLYTTFDRIIDKHD 338 (484)
T ss_pred HHhcC---------HHHhhHhhcCCc-CCccccCceeeeeHHHHHHHHHHhcCCCceeeeeccchHHhhhhcccccC
Confidence 55664 122222233322 111111223347899999999999998877 788889999988888654
No 187
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=21.54 E-value=24 Score=29.61 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=0.0
Q ss_pred cccccCCCCCCCCCCCcccccccChhhhhccccccc
Q 003291 108 LSCSVCDNMEGPNDGSKRRARFRNIEQLKGHLFHRH 143 (833)
Q Consensus 108 ~~C~~C~k~~~~~~g~~~~~~F~s~~~Lk~Hlr~~H 143 (833)
+.||-|+. .|...++..+|+...|
T Consensus 18 lrCPRC~~------------~FR~~K~Y~RHVNKaH 41 (65)
T COG4049 18 LRCPRCGM------------VFRRRKDYIRHVNKAH 41 (65)
T ss_pred eeCCchhH------------HHHHhHHHHHHhhHHh
No 188
>PF14353 CpXC: CpXC protein
Probab=20.36 E-value=24 Score=33.92 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=19.6
Q ss_pred CCCCCCCCccCCchhH----------hhhcc---CCcccCCCCCCc
Q 003291 195 PMCEFCRTPFYGDNEL----------YTHMS---TEHYTCHICQRQ 227 (833)
Q Consensus 195 ~~C~~C~k~F~~~~~L----------~~Hmr---ekhf~C~iC~k~ 227 (833)
..|+.|+..|.-.-.. ..-+. -.-|.|+.|+..
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~ 47 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHK 47 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCc
Confidence 4699999877533221 21111 123789999987
No 189
>COG4896 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.16 E-value=34 Score=29.24 Aligned_cols=33 Identities=21% Similarity=0.568 Sum_probs=18.8
Q ss_pred ccCCCCCCccCCcccccCChhH-HHhhhcCCC---ccCChhhhcc
Q 003291 219 YTCHICQRQHPGQYEYYKNYDD-LEIHFRRDH---FLCEDEACLA 259 (833)
Q Consensus 219 f~C~iC~k~~~~~~~yF~~~~~-L~~H~r~kH---y~C~~~~C~k 259 (833)
-+|-+|++.. +-+... -.+.++.+| |.|++ |..
T Consensus 3 vkCiiCd~v~------~iD~rt~~tKrLrN~PIrtymC~e--C~~ 39 (68)
T COG4896 3 VKCIICDRVD------EIDNRTFKTKRLRNKPIRTYMCPE--CEH 39 (68)
T ss_pred ceEEEeccee------eecchhHHHHHhhCCCceeEechh--hHh
Confidence 3678888752 333333 333445544 88988 864
No 190
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=20.16 E-value=88 Score=25.46 Aligned_cols=43 Identities=19% Similarity=0.427 Sum_probs=21.6
Q ss_pred cccccccccceeeee-cCCCcccccch--HhHHHhHhCCCccccccc
Q 003291 4 SCAVCADTLEWVAYG-GCGHREVCSTC--VARLRFICQDRRCCICKT 47 (833)
Q Consensus 4 ~C~IC~e~~~~~a~~-~C~H~~~C~~C--~lRLR~L~~~k~CpiCrt 47 (833)
.|.|....+++-+.| .|.|. .|.-= .|.+....+.-.||+|.+
T Consensus 4 ~CPls~~~i~~P~Rg~~C~H~-~CFDl~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 4 RCPLSFQRIRIPVRGKNCKHL-QCFDLESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp B-TTTSSB-SSEEEETT--SS---EEHHHHHHHHHHS---B-TTT--
T ss_pred eCCCCCCEEEeCccCCcCccc-ceECHHHHHHHhhccCCeECcCCcC
Confidence 588999999888887 89996 55432 233444444567999975
Done!