BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003292
(833 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P51612|XPC_MOUSE DNA repair protein complementing XP-C cells homolog OS=Mus musculus
GN=Xpc PE=1 SV=2
Length = 930
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 230/716 (32%), Positives = 335/716 (46%), Gaps = 86/716 (12%)
Query: 73 DKELAELVHKVHLLCLLARGRLIDSVCDDPLIQASLLSLLPSYLLKISEVSKLTANALSP 132
+KE+ E +HKVHLLCLLA G +S+C P + A LS++P K+ + A LS
Sbjct: 194 NKEVQENMHKVHLLCLLASGFYRNSICRQPDLLAIGLSIIPIRFTKVP-LQDRDAYYLSN 252
Query: 133 IVSWFHDNFHVRSSVSTRRSFHSDLAHALESREGT-----PEEIAALSVALFRALKLTTR 187
+V WF F V + +S S DL LE R EE+ + + + RAL+L TR
Sbjct: 253 LVKWFIGTFTVNADLSA--SEQDDLQTTLERRIAIYSARDNEELVHIFLLILRALQLLTR 310
Query: 188 FVSILDVASLKPEADKNVSSNQDSSRVGGG-----------IFNAPTL-MVAKPEEVLAS 235
V L LK K S++++S G G N PT K EE L+
Sbjct: 311 LVLSLQPIPLKSAVTKGRKSSKETSVEGPGGSSELSSNSPESHNKPTTSRRIKEEETLSE 370
Query: 236 PVKSFSCDKKENVCETSSKG--SPECKYSSPKSNNTQ----SKKSPVSCELS-------- 281
+ K S+ P C Q ++K V+ ++S
Sbjct: 371 GRGKATARGKRGTGTAGSRQRRKPSCSEGEEAEQKVQGRPHARKRRVAAKVSYKEESESD 430
Query: 282 ----SGNLDPSSSMACSDISEACHPKEKSQALKRKGDLEFEMQLEMALSATNVATSKSNI 337
+ +PSS E C P + Q KR Q A S + T + +
Sbjct: 431 GAGSGSDFEPSSGEGQHSSDEDCEPGPRKQ--KRAS----APQRTKAGSKSASKTQRGSQ 484
Query: 338 CSDVKDLNSNSSTVLPVKRLKKIESGESSTSCLGISTAVGSRKVGAPLYWAEVYCSGENL 397
C + SS+ KR KK+ SG + + RK W EVYC +
Sbjct: 485 C-EPSSFPEASSSSSGCKRGKKVSSG---------AEEMADRKPAGVDQWLEVYCEPQ-- 532
Query: 398 TGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCG-AKDVTRRYCMKWYRIASK 456
KWV VD + ++ Q V A K + Y+V G +DVT+RY W K
Sbjct: 533 -AKWVCVDCVHGVVG--QPVACYKYATK-PMTYVVGIDSDGWVRDVTQRYDPAWMTATRK 588
Query: 457 -RVNSAWWDAVLAPLRELESGATGDLNVESSAKDSFVADRNSLEDMELETRALTEPLPTN 515
RV++ WW L P R S + +R ED E + + L +PLPT+
Sbjct: 589 CRVDAEWWAETLRPYR------------------SLLTEREKKEDQEFQAKHLDQPLPTS 630
Query: 516 QQAYKNHQLYVIERWLNKYQILYPK-GPILGFCSGHAVYPRSCVQTLKTKERWLREALQV 574
YKNH LY ++R L K+Q +YP+ +LG+C G AVY R CV TL +++ WL++A V
Sbjct: 631 ISTYKNHPLYALKRHLLKFQAIYPETAAVLGYCRGEAVYSRDCVHTLHSRDTWLKQARVV 690
Query: 575 KANEVPVKVIKN-SSKSKKGQDFEPEDYDEVDARGNIELYGKWQLEPLRLPSAVNGIVPR 633
+ EVP K++K S++++K + EP+ +D D + LYG WQ E + P AV+G VPR
Sbjct: 691 RLGEVPYKMVKGFSNRARKARLSEPQLHDHND----LGLYGHWQTEEYQPPIAVDGKVPR 746
Query: 634 NERGQVDVWSEKCLPPGTVHLRLPRVYSVAKRLEIDSAPAMVGFEFRNGRSTPVFDGIVV 693
NE G V ++ +P G V + LP + VA++L ID A+ GF+F G PV DG +V
Sbjct: 747 NEFGNVYLFLPSMMPVGCVQMTLPNLNRVARKLGIDCVQAITGFDFHGGYCHPVTDGYIV 806
Query: 694 CAEFKDTILEAYAEEEEKREAEEKKRREAQATSRWYQLLSSIVTRQRLNNCYGNNS 749
C EF+D +L A+ E+ E +EK+++E +A W L+ ++ R+RL YG S
Sbjct: 807 CEEFRDVLLAAWENEQAIIEKKEKEKKEKRALGNWKLLVRGLLIRERLKLRYGAKS 862
>sp|Q01831|XPC_HUMAN DNA repair protein complementing XP-C cells OS=Homo sapiens GN=XPC
PE=1 SV=4
Length = 940
Score = 254 bits (650), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 230/738 (31%), Positives = 337/738 (45%), Gaps = 112/738 (15%)
Query: 66 VRRASAE-DKELAELVHKVHLLCLLARGRLIDSVCDDPLIQASLLSLLPSYLLKISEVSK 124
+RRA +K + E HKVHLLCLLA G +++C P + A LS++P+ ++
Sbjct: 190 LRRAMKRFNKGVHEDTHKVHLLCLLANGFYRNNICSQPDLHAIGLSIIPARFTRVLP-RD 248
Query: 125 LTANALSPIVSWFHDNFHVRSSVSTRRSFHSDLAHALESREGT-----PEEIAALSVALF 179
+ LS +V WF F V + +S S +L LE R EE+ + + +
Sbjct: 249 VDTYYLSNLVKWFIGTFTVNAELSA--SEQDNLQTTLERRFAIYSARDDEELVHIFLLIL 306
Query: 180 RALKLTTRFVSILDVASLKPEADKNV------------SSNQDSSRVGGGIFNAPTLMVA 227
RAL+L TR V L LK K S++ SS+V T
Sbjct: 307 RALQLLTRLVLSLQPIPLKSATAKGKKPSKERLTADPGGSSETSSQVLENHTKPKTSKGT 366
Query: 228 KPEEVLASPVKSFSCDKKENVCETSSKGSPECKYSSPKSNNTQSKK-------------- 273
K EE A S K N + P + Q K
Sbjct: 367 KQEETFAKGTCRPSAKGKRNKGGRKKRSKPSSSEEDEGPGDKQEKATQRRPHGRERRVAS 426
Query: 274 --------------SPVSCELSSGNL-DPSSSMACSDISEACHPKEKSQALKRKGDLEFE 318
S ELSSG DPS + SE PK++ ++
Sbjct: 427 RVSYKEESGSDEAGSGSDFELSSGEASDPSD-----EDSEPGPPKQRKAPAPQR------ 475
Query: 319 MQLEMALSATNVATSKSNICSDVKD--LNSNSSTVLPVKRLKKIES-GESSTSCLGISTA 375
A + + S+++ S KD L + SS+ KR KK+ S GE +
Sbjct: 476 ------TKAGSKSASRTHRGSHRKDPSLPAASSSSSSSKRGKKMCSDGEKAEK------- 522
Query: 376 VGSRKVGAPLYWAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFA 435
R + W EV+C E KWV VD + ++ Q + A K + Y+V
Sbjct: 523 ---RSIAGIDQWLEVFCEQEE---KWVCVDCVHGVVG--QPLTCYKYATK-PMTYVVGID 573
Query: 436 GCG-AKDVTRRYCMKWYRIASK-RVNSAWWDAVLAPLRELESGATGDLNVESSAKDSFVA 493
G +DVT+RY W + K RV++ WW L P + S
Sbjct: 574 SDGWVRDVTQRYDPVWMTVTRKCRVDAEWWAETLRPYQ------------------SPFM 615
Query: 494 DRNSLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPK-GPILGFCSGHAV 552
DR ED+E + + + +PLPT YKNH LY ++R L KY+ +YP+ ILG+C G AV
Sbjct: 616 DREKKEDLEFQAKHMDQPLPTAIGLYKNHPLYALKRHLLKYEAIYPETAAILGYCRGEAV 675
Query: 553 YPRSCVQTLKTKERWLREALQVKANEVPVKVIKN-SSKSKKGQDFEPEDYDEVDARGNIE 611
Y R CV TL +++ WL++A V+ EVP K++K S++++K + EP+ +E D +
Sbjct: 676 YSRDCVHTLHSRDTWLKKARVVRLGEVPYKMVKGFSNRARKARLAEPQLREEND----LG 731
Query: 612 LYGKWQLEPLRLPSAVNGIVPRNERGQVDVWSEKCLPPGTVHLRLPRVYSVAKRLEIDSA 671
L+G WQ E + P AV+G VPRNE G V ++ +P G V L LP ++ VA++L+ID
Sbjct: 732 LFGYWQTEEYQPPVAVDGKVPRNEFGNVYLFLPSMMPIGCVQLNLPNLHRVARKLDIDCV 791
Query: 672 PAMVGFEFRNGRSTPVFDGIVVCAEFKDTILEAYAEEEEKREAEEKKRREAQATSRWYQL 731
A+ GF+F G S PV DG +VC EFKD +L A+ E+ E +EK+++E +A W L
Sbjct: 792 QAITGFDFHGGYSHPVTDGYIVCEEFKDVLLTAWENEQAVIERKEKEKKEKRALGNWKLL 851
Query: 732 LSSIVTRQRLNNCYGNNS 749
++ R+RL YG S
Sbjct: 852 AKGLLIRERLKRRYGPKS 869
>sp|Q24595|XPC_DROME DNA repair protein complementing XP-C cells homolog OS=Drosophila
melanogaster GN=mus210 PE=1 SV=2
Length = 1293
Score = 212 bits (540), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 128/372 (34%), Positives = 189/372 (50%), Gaps = 36/372 (9%)
Query: 378 SRKVGAPLYWAEVYCSGENLTGKWVHVDAANAIIDGEQK-VEAAAAACKTSLRYIVAFAG 436
+RK A W EV+ E +W+ +D + G+ V+ L Y+ AF
Sbjct: 952 NRKTDASDMWVEVWSDVEE---QWICID----LFKGKLHCVDTIRKNATPGLAYVFAFQD 1004
Query: 437 CGA-KDVTRRYCMKWYRIASK-RVNSAWWDAVLAPLRELESGATGDLNVESSAKDSFVAD 494
+ KDVT RYC W K RV AW D +AP +
Sbjct: 1005 DQSLKDVTARYCASWSTTVRKARVEKAWLDETIAPYLGRRT------------------K 1046
Query: 495 RNSLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYP-KGPILGFCSGHAVY 553
R+ ED +L +PLP + +K+H LYV+ER L K+Q LYP P LGF G AVY
Sbjct: 1047 RDITEDDQLRRIHSDKPLPKSISEFKDHPLYVLERHLLKFQGLYPPDAPTLGFIRGEAVY 1106
Query: 554 PRSCVQTLKTKERWLREALQVKANEVPVKVIKNSSKSKKGQDFEPEDYDEVDARGNIELY 613
R CV L ++E WL+ A VK E P KV+K K + +D +E++
Sbjct: 1107 SRDCVHLLHSREIWLKSARVVKLGEQPYKVVKARPKWDRLTRTVIKDQP-------LEIF 1159
Query: 614 GKWQLEPLRLPSAVNGIVPRNERGQVDVWSEKCLPPGTVHLRLPRVYSVAKRLEIDSAPA 673
G WQ + P+A NGIVPRN G V+++ + LP TVHLRLP + + K+L ID A A
Sbjct: 1160 GYWQTQEYEPPTAENGIVPRNAYGNVELFKDCMLPKKTVHLRLPGLMRICKKLNIDCANA 1219
Query: 674 MVGFEFRNGRSTPVFDGIVVCAEFKDTILEAYAEEEEKREAEEKKRREAQATSRWYQLLS 733
+VGF+F G P++DG +VC EF++ + A+ E+++ + +E+++ E + W +L+
Sbjct: 1220 VVGFDFHQGACHPMYDGFIVCEEFREVVTAAWEEDQQVQVLKEQEKYETRVYGNWKKLIK 1279
Query: 734 SIVTRQRLNNCY 745
++ R+RL Y
Sbjct: 1280 GLLIRERLKKKY 1291
Score = 41.6 bits (96), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 27/170 (15%)
Query: 67 RRASAEDKELAELVHKVHLLCLLAR----GRLIDSVCDDPLIQASLLSLLPSYLLKISEV 122
RR + + K+ L+HKV L+C +AR RL+ D L+QA+ L LLPS +E
Sbjct: 370 RRLNRDIKDRQILLHKVSLMCQIARSLKYNRLLSE--SDSLMQAT-LKLLPSRNAYPTER 426
Query: 123 SKLTANALSPIVSWFHD-------NFHVRSSVSTRRSFHSDLAHALESREGT-PEEIAAL 174
L V+WF N + S +T+ + L ++ +E +++ +
Sbjct: 427 G-TELKYLQSFVTWFKTSIKLLSPNLYSAQSPATKEAILEALLEQVKRKEARCKQDMIFI 485
Query: 175 SVALFRALKLTTRFVSILDVASLKPEA-----------DKNVSSNQDSSR 213
+AL R + + R + L L+P A DKN S +S R
Sbjct: 486 FIALARGMGMHCRLIVNLQPMPLRPAASDLIPIKLRPDDKNKSQTVESER 535
>sp|Q10445|RHP41_SCHPO DNA repair protein rhp41 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rhp41 PE=3 SV=1
Length = 638
Score = 143 bits (360), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 111/376 (29%), Positives = 171/376 (45%), Gaps = 52/376 (13%)
Query: 384 PLYWAEVYCSGENLTGKWVHVDAAN--AIIDGEQKVEAAAAACKTSLRYIVAFAGCG-AK 440
P++W E + KWV VD ++I ++ E A++ + Y+ A G K
Sbjct: 302 PVFWVEAFNKA---MQKWVCVDPFGDASVIGKYRRFEPASSDHLNQMTYVFAIEANGYVK 358
Query: 441 DVTRRYCMKWYRIASKRV-----NSAWWDAVLAPLRELESGATGDLNVESSAKDSFVADR 495
DVTR+YC+ +Y+I RV AW + + + + G D F D
Sbjct: 359 DVTRKYCLHYYKILKNRVEIFPFGKAWMNRIFSKI-----GKPRD----------FYNDM 403
Query: 496 NSLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPK---GPILGFCSGHAV 552
+++ED EL +E +P N Q K+H L+V+ER L K Q + G I V
Sbjct: 404 DAIEDAELLRLEQSEGIPRNIQDLKDHPLFVLERHLKKNQAIKTGKSCGRINTKNGVELV 463
Query: 553 YPRSCVQTLKTKERWLREALQVKANEVPVKVIKNSSKSKKGQDFEPEDYDEVDARGNIEL 612
YPR V + E W R+ +K P+K +KN K + L
Sbjct: 464 YPRKYVSNGFSAEHWYRKGRIIKPGAQPLKHVKNGDKV-------------------LPL 504
Query: 613 YGKWQLEPLRLPSAVNGIVPRNERGQVDVWSEKCLPPGTVHLRLPRVYSVAKRLEIDSAP 672
Y + + V IVP+N G +D++ LP G H R + AK LEID A
Sbjct: 505 YDEEATQLYTPKPVVANIVPKNAYGNIDLYVPSMLPYGAYHCRKRCALAAAKFLEIDYAK 564
Query: 673 AMVGFEFRNGRSTPVFDGIVVCAEFKDTILEAYAEE--EEKREAEEKKRREAQATSRWYQ 730
A+VGF+F+ S P +G+VV +++ I + AEE +E++EAE + R+ W +
Sbjct: 565 AVVGFDFQRKYSKPKLEGVVVSKRYEEAI-DLIAEEIDQEEKEAEARNVRKT-CLLLWKR 622
Query: 731 LLSSIVTRQRLNNCYG 746
L++ + RQR+ YG
Sbjct: 623 LITGLRIRQRVFEEYG 638
>sp|P87235|RHP42_SCHPO DNA repair protein rhp42 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rhp42 PE=3 SV=1
Length = 686
Score = 117 bits (292), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 108/387 (27%), Positives = 172/387 (44%), Gaps = 47/387 (12%)
Query: 384 PLYWAEVYCSGENLTGKWVHVDAA--NAIIDGEQ---KVEAAAAACKTSLRYIVAFAG-- 436
P++W E+Y E KW+ VDA N + + + + A A K IVA
Sbjct: 323 PIFWTEIYDQSEK---KWIAVDAVVLNGVYTNDMTWFEPKGAYAESKHLRMGIVAAYDND 379
Query: 437 CGAKDVTRRYC----MKWYRIASKRVNSAWWDAVLAPLRELESGATGDLNVESSAKDSFV 492
AKDVT RY + +I ++D A +L A+D +
Sbjct: 380 LYAKDVTLRYTDYQSSRLKKIRHVSFADKYFDFYKAIFGQLAKR-------NKDAEDIY- 431
Query: 493 ADRNSLEDMELETRALTEPL--PTNQQAYKNHQLYVIERWLNKYQILYPKG-PILGFCSG 549
E+ ELE++ P+ P + +KNH +V+ R L + + L P P+ G
Sbjct: 432 ------EEKELESKV---PIREPKSFADFKNHPEFVLIRHLRREEALLPNAKPVKTATFG 482
Query: 550 HA-------VYPRSCVQTLKTKERWLREALQVKANEVPVKVIKNSSKS---KKGQDFEPE 599
+ VY R V KT E + +E +K E P K++K + + K+ +F
Sbjct: 483 NGKKATSEEVYLRKDVVICKTPENYHKEGRVIKEGEQPRKMVKARAVTISRKREHEFRVA 542
Query: 600 DYDEVDARGNIELYGKWQLEPLRLPSAVNGIVPRNERGQVDVWSEKCLPPGTVHLRLPRV 659
+ +E +G LY Q E P +GI+P+N G +D + E +P G HL +
Sbjct: 543 ETNEPVLQG---LYSSDQTELYVPPPIKDGIIPKNGYGNMDCFVESMIPKGAAHLPYRGI 599
Query: 660 YSVAKRLEIDSAPAMVGFEFRNGRSTPVFDGIVVCAEFKDTILEAYAEEEEKREAEEKKR 719
+AK+L ID A A+ GFEFR R+ PV GI+V E + E + E E+ R +++ +
Sbjct: 600 AKIAKKLNIDYADAVTGFEFRKHRAIPVTTGIIVPEESAQMVYEEFLECEKIRIEKQQMK 659
Query: 720 REAQATSRWYQLLSSIVTRQRLNNCYG 746
+W LL+++ R+R+ Y
Sbjct: 660 ERKIIYGQWKHLLNALRIRKRIEEQYA 686
>sp|P14736|RAD4_YEAST DNA repair protein RAD4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD4 PE=1 SV=3
Length = 754
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 106/410 (25%), Positives = 174/410 (42%), Gaps = 55/410 (13%)
Query: 381 VGAPLYWAEVYCSGENLTGKWVHVDAANAI----IDGEQKVEAAAAAC--KTSLRYIVAF 434
V P++W EV+ + + KW+ VD N + K+ AC + LRY++A+
Sbjct: 310 VKYPIFWCEVW---DKFSKKWITVDPVNLKTIEQVRLHSKLAPKGVACCERNMLRYVIAY 366
Query: 435 -AGCGAKDVTRRYCMKWY-------RIASKRVNSAWWDAVLAPLRELESGATGDLNVESS 486
G +DVTRRY +W RI W+ V+ L + D
Sbjct: 367 DRKYGCRDVTRRYA-QWMNSKVRKRRITKDDFGEKWFRKVITALHHRKRTKIDDY----- 420
Query: 487 AKDSFVADRNSLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPKGPILGF 546
ED R +E +P + Q KNH YV+E+ + + QI+ P G+
Sbjct: 421 ------------EDQYFFQRDESEGIPDSVQDLKNHPYYVLEQDIKQTQIVKPGCKECGY 468
Query: 547 CSGHA-------VYPRSCVQTLKTKERWLREALQVKANEVPVKVIKNSSKSKKGQDFEPE 599
H VY + + LK+ +W +K KVIK + KG E E
Sbjct: 469 LKVHGKVGKVLKVYAKRDIADLKSARQWYMNGRILKTGSRCKKVIKRTVGRPKG---EAE 525
Query: 600 DYDE-VDARGNIELYGKWQLEPLRLPSAVNGIVPRNERGQVDVWSEKCLPPGTVHLRLPR 658
+ DE + + + ELY + PL ++ +G + +N G ++V++ +P + P
Sbjct: 526 EEDERLYSFEDTELY----IPPL---ASASGEITKNTFGNIEVFAPTMIPGNCCLVENPV 578
Query: 659 VYSVAKRLEIDSAPAMVGFEFRNGRST-PVFDGIVVCAEFKDTILEAYAEEEEKREAEEK 717
A+ L ++ APA+ F+F G + PV GIVV ++ I A E +E + +
Sbjct: 579 AIKAARFLGVEFAPAVTSFKFERGSTVKPVLSGIVVAKWLREAIETAIDGIEFIQEDDNR 638
Query: 718 KRREAQATSRWYQLLSSIVTRQRLNNCYGNNSTSQSS-SNFQNVKKTNSN 766
K A W LL + R +LN+ YG + + + + QN+ + N
Sbjct: 639 KEHLLGALESWNTLLLKLRIRSKLNSTYGKIAEEEPNVTKEQNIADNHDN 688
>sp|Q7F0R1|PNG1_ORYSJ Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Oryza sativa subsp. japonica GN=PNG1 PE=2 SV=1
Length = 447
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 387 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 446
W E + NL G+W+H+D + D E L Y++A + G +DVT+RY
Sbjct: 296 WTECF---SNLYGRWMHLDPCEGVYDNPLLYEKG---WNKKLDYVIAISKDGVRDVTKRY 349
Query: 447 CMKWYRIASKRV 458
KW+ + S+R+
Sbjct: 350 TRKWHEVLSRRI 361
>sp|Q9FGY9|PNG1_ARATH Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Arabidopsis thaliana GN=PNG1 PE=2 SV=1
Length = 721
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 387 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 446
W E Y +W+H+D + D E L Y++A + G DVT+RY
Sbjct: 280 WTECYSHS---LKRWIHLDPCEGVYDKPMLYEKG---WNKKLNYVIAISKDGVCDVTKRY 333
Query: 447 CMKWYRIASKRV 458
KW+ + S+R
Sbjct: 334 TKKWHEVLSRRT 345
>sp|Q8J2R3|PNG1_GIBMO Protein PNG1 OS=Gibberella moniliformis GN=PNG1 PE=3 SV=1
Length = 450
Score = 41.6 bits (96), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 387 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 446
W EVY + +WVHVDA D + + A + Y +AF+ GA DVTRRY
Sbjct: 272 WTEVYSDHQK---RWVHVDACEEAWDNPRLL---AEGWGKKMSYCIAFSIDGATDVTRRY 325
Query: 447 CMK 449
K
Sbjct: 326 VRK 328
>sp|Q4IR87|PNG1_GIBZE Protein PNG1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC
9075 / NRRL 31084) GN=PNG1 PE=3 SV=1
Length = 451
Score = 41.2 bits (95), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 387 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 446
W EVY + +WVHVDA D + A + Y +AF+ GA DVTRRY
Sbjct: 272 WTEVYSDHQK---RWVHVDACEEAWDNPRLY---AEGWGKKMSYCIAFSIDGATDVTRRY 325
Query: 447 CMK 449
K
Sbjct: 326 VRK 328
>sp|Q2UPS5|PNG1_ASPOR Protein png1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=png1 PE=3 SV=1
Length = 457
Score = 40.8 bits (94), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 387 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 446
W E+Y + +WVHVDA D + ++ A K S Y +AF+ GA DVTRRY
Sbjct: 290 WTEIYSEHQR---RWVHVDACEGAWD-QPRLYAEGWGRKMS--YCIAFSIDGATDVTRRY 343
>sp|Q4WHW1|PNG1_ASPFU Protein png1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293
/ CBS 101355 / FGSC A1100) GN=png1 PE=3 SV=1
Length = 455
Score = 40.4 bits (93), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 387 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 446
W EVY + +WVHVDA D + L Y +AF+ GA DVTRRY
Sbjct: 288 WTEVYSEHQR---RWVHVDACEGAWD---QPRLYTEGWGRKLSYCIAFSIDGATDVTRRY 341
>sp|Q5B6P3|PNG1_EMENI Protein PNG1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=png1 PE=3 SV=1
Length = 441
Score = 40.0 bits (92), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 387 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 446
W EVY + +W+HVDA D + ++ A K S Y +AF+ GA DVTRRY
Sbjct: 275 WTEVYSEHQK---RWIHVDACEETWD-QPRLYAEGWGRKIS--YCIAFSIDGATDVTRRY 328
>sp|Q75D29|PNG1_ASHGO Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=PNG1 PE=3 SV=1
Length = 350
Score = 37.7 bits (86), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 387 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 446
W EVY N +WVHVD+ D + + ++ Y++AF+ KDV+RRY
Sbjct: 212 WCEVY---SNALKRWVHVDSCEKSFD---EPHIYSVNWNKAMSYVIAFSNRSVKDVSRRY 265
Query: 447 CMK 449
++
Sbjct: 266 IVR 268
>sp|Q7SI01|PNG1_NEUCR Protein png-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A
/ CBS 708.71 / DSM 1257 / FGSC 987) GN=png-1 PE=3 SV=1
Length = 382
Score = 37.0 bits (84), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 387 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 446
W E+Y + +WVHVD+ D + Y++AF+ GA DVTRRY
Sbjct: 207 WTEIYSEHQQ---RWVHVDSCEEAWDMPHMYYKNWG---KKMSYVIAFSREGAVDVTRRY 260
>sp|Q5XI55|NGLY1_RAT Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Rattus norvegicus GN=Ngly1 PE=2 SV=2
Length = 651
Score = 36.6 bits (83), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 387 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 446
W EVY + +W+H DA + D E L YI+AF+ DVT RY
Sbjct: 335 WTEVYSPSQQ---RWLHCDACEDVCDKPLLYEIGWGK---KLSYIIAFSKDEVVDVTWRY 388
Query: 447 CMKWYRIASKRV 458
K + S+R
Sbjct: 389 SCKHEEVMSRRT 400
>sp|Q6CAX5|PNG1_YARLI Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PNG1
PE=3 SV=1
Length = 356
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 387 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 446
W+EVY +W+H D+ + + + Y+V F+G G DVTRRY
Sbjct: 218 WSEVYSERRK---EWIHTDSCEEAWNSPT---IYSQGWGKKMSYVVGFSGDGVTDVTRRY 271
Query: 447 CMK 449
K
Sbjct: 272 VRK 274
>sp|Q0VDD8|DYH14_HUMAN Dynein heavy chain 14, axonemal OS=Homo sapiens GN=DNAH14 PE=2 SV=3
Length = 3507
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 41/181 (22%)
Query: 430 YIVAFAGCGAKDVTRRYCM----KWYRI-ASKRVNSAWWDAVLAPLRELESGATG----- 479
+ + GCG K C K YR+ S + + V + + +G G
Sbjct: 2010 FQIGIDGCGKKTCATLACYLTDNKLYRVPISHKCAYIEFKEVFKKVF-IHAGLKGKPTVL 2068
Query: 480 ---DLNVESSAKDSFVADRNSL----------EDMELETRALTEPLPTNQQAYKNHQLYV 526
+LN+E +DSF+ D N + E++EL++ A+ T Q + +++ +
Sbjct: 2069 MVPNLNIE---QDSFLEDLNYIISSGRIPDLFENVELDSIAMKIRYLTEQSGHMDNRQSL 2125
Query: 527 IERW-------LNKYQILYPKGPILGFCSGHAVYPR---SCVQTLKTKERWLREALQVKA 576
+ + L+ + I+ P+GP F VYP SC T+ ERW EAL + A
Sbjct: 2126 LSFFQKRIYKNLHIFVIMSPEGP--SFRQNCRVYPSMISSC--TIDWYERWPEEALLIVA 2181
Query: 577 N 577
N
Sbjct: 2182 N 2182
>sp|Q9JI78|NGLY1_MOUSE Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Mus
musculus GN=Ngly1 PE=1 SV=2
Length = 651
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 387 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 446
W EVY + +W+H DA + D E L YI+AF+ DVT RY
Sbjct: 335 WTEVYSPSQQ---RWLHCDACEDVCDKPLLYEIGWGK---KLSYIIAFSKDEVVDVTWRY 388
Query: 447 CMKWYRIASKRV 458
K + S+R
Sbjct: 389 SCKHDEVMSRRT 400
>sp|Q4R6F3|NGLY1_MACFA Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Macaca fascicularis GN=NGLY1 PE=2 SV=1
Length = 654
Score = 34.7 bits (78), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 387 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 446
W EVY + +W+H DA + D E L Y++AF+ DVT RY
Sbjct: 338 WTEVYSPSQQ---RWLHCDACEDVCDKPLLYEIGWGK---KLSYVIAFSKDEVVDVTWRY 391
Query: 447 CMKWYRIASKRV 458
K + ++R
Sbjct: 392 SCKHEEVIARRT 403
>sp|Q7KRR5|NGLY1_DROME Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Drosophila melanogaster GN=Pngl PE=1 SV=1
Length = 631
Score = 34.7 bits (78), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 387 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 446
W EVY + +W+HVD + +ID + K + YI+A++ +DVT RY
Sbjct: 325 WTEVYSEAQ---MRWLHVDPSENVIDSPLMYQ---HGWKRHIDYILAYSRDDIQDVTWRY 378
>sp|Q96IV0|NGLY1_HUMAN Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Homo
sapiens GN=NGLY1 PE=1 SV=1
Length = 654
Score = 34.7 bits (78), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 387 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 446
W EVY + +W+H DA + D E L Y++AF+ DVT RY
Sbjct: 338 WTEVYSPSQQ---RWLHCDACEDVCDKPLLYEIGWGK---KLSYVIAFSKDEVVDVTWRY 391
Query: 447 CMKWYRIASKRV 458
K + ++R
Sbjct: 392 SCKHEEVIARRT 403
>sp|Q503I8|NGLY1_DANRE Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Danio rerio GN=ngly1 PE=2 SV=1
Length = 644
Score = 33.9 bits (76), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 387 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 446
W EVY + +W+H D D E L YI+AF+ DVT RY
Sbjct: 323 WTEVYSQSQR---RWIHCDPCENACDKPLLYEVGWGK---KLSYILAFSKDQVADVTWRY 376
Query: 447 CMKWYRIASKR--VNSAW 462
K + S+R V W
Sbjct: 377 SCKHPEVLSRRTQVQETW 394
>sp|Q30NS7|PYRG_SULDN CTP synthase OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM
1251) GN=pyrG PE=3 SV=1
Length = 542
Score = 33.1 bits (74), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 7/124 (5%)
Query: 186 TRFVSILDVASLKPEADKNVSSNQDSSRVGGGIFNAPTLMVAKPEEVLASPVK---SFSC 242
T FV + + +K + Q S + I P +++A+ E L K + SC
Sbjct: 168 TFFVHVTLIPFIKAAGELKSKPTQHSVQELRRIGITPQMIIARSENALPKTFKKKLAMSC 227
Query: 243 D-KKENVCETSSKGSPECKYSSPKSNNTQSKKSPVSCELSSGNLDPSSSMACSDISEACH 301
D ++V E S Y P S Q+ P+S ELS G L+P+ S + +
Sbjct: 228 DVSSDSVIEALDAAS---IYDVPISFLRQNILKPISKELSLGELNPNMEKWDSLVKKIVQ 284
Query: 302 PKEK 305
P+ +
Sbjct: 285 PQNR 288
>sp|Q5ZJM3|NGLY1_CHICK Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Gallus gallus GN=NGLY1 PE=2 SV=1
Length = 651
Score = 33.1 bits (74), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 387 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 446
W EVY + + +W+H D + D E L Y++AF+ DVT RY
Sbjct: 334 WTEVYSASQK---RWLHCDPCENVCDKPLLYEIGWGK---KLSYVIAFSKDEVVDVTWRY 387
Query: 447 CMKWYRIASKRV 458
K + ++R
Sbjct: 388 SCKHQEVLTRRT 399
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 304,204,466
Number of Sequences: 539616
Number of extensions: 12853612
Number of successful extensions: 49013
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 99
Number of HSP's that attempted gapping in prelim test: 47962
Number of HSP's gapped (non-prelim): 1006
length of query: 833
length of database: 191,569,459
effective HSP length: 126
effective length of query: 707
effective length of database: 123,577,843
effective search space: 87369535001
effective search space used: 87369535001
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)