Query 003292
Match_columns 833
No_of_seqs 235 out of 463
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 20:12:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003292.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003292hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qsf_A RAD4, DNA repair protei 100.0 6E-122 2E-126 1051.7 31.4 469 46-709 6-531 (533)
2 1x3z_A Peptide: N-glycanase; h 99.9 4.2E-26 1.4E-30 245.7 12.5 108 385-505 211-318 (335)
3 2f4m_A Peptide N-glycanase; gl 99.9 4.2E-21 1.4E-25 205.1 17.3 108 385-504 170-279 (295)
4 3isr_A Transglutaminase-like e 96.1 0.0042 1.4E-07 66.6 5.2 84 96-190 120-203 (293)
5 3kd4_A Putative protease; stru 94.4 0.037 1.3E-06 63.4 6.0 84 99-190 225-309 (506)
6 1ex0_A Coagulation factor XIII 85.2 0.79 2.7E-05 54.6 5.6 37 157-193 299-339 (731)
7 1g0d_A Protein-glutamine gamma 85.0 0.7 2.4E-05 54.7 5.0 37 157-193 256-297 (695)
8 1vjj_A Protein-glutamine gluta 84.8 0.72 2.4E-05 54.7 5.0 29 165-193 269-297 (692)
9 2q3z_A Transglutaminase 2; tra 83.5 0.77 2.6E-05 54.5 4.5 28 165-192 274-301 (687)
10 3isr_A Transglutaminase-like e 49.1 8.9 0.00031 40.8 3.1 23 383-410 213-235 (293)
11 1gh9_A 8.3 kDa protein (gene M 39.3 8.9 0.00031 32.7 0.9 19 815-833 17-35 (71)
12 1m45_B IQ2, IQ2 motif from MYO 25.1 78 0.0027 21.4 3.4 22 723-744 4-25 (26)
13 1yop_A KTI11P; zinc finger, me 21.3 40 0.0014 29.6 1.9 31 800-831 5-35 (83)
14 2jtx_A Transcription initiatio 20.7 69 0.0023 29.3 3.4 20 65-84 81-100 (106)
No 1
>2qsf_A RAD4, DNA repair protein RAD4; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_A* 2qsh_A*
Probab=100.00 E-value=6e-122 Score=1051.67 Aligned_cols=469 Identities=22% Similarity=0.378 Sum_probs=372.3
Q ss_pred CCCcceEEEEecCcc--ccc--ccccccChHHHHHHHHHHHHHHHHHHhhhHHHHhhcCcHHHHHHhhcccccccccccC
Q 003292 46 SDIKGVTIEFDAADS--VTK--KPVRRASAEDKELAELVHKVHLLCLLARGRLIDSVCDDPLIQASLLSLLPSYLLKISE 121 (833)
Q Consensus 46 ~~~~~v~Ie~~~~~~--~kk--k~~RR~t~~eKe~~~~~HKvHLLCLLAhg~~rN~~Cnd~~lqa~llSllp~~~~~~~~ 121 (833)
.+..+|+|+|+.... .++ ++.+.+|+.||++|+++||+||||||+|+++||+||||++||++|+|+||.++....+
T Consensus 6 ~~~~~l~itl~~~~~~~~~~~~~~kk~~S~~ER~~R~~~Hk~hvl~LL~H~~~RN~W~nD~~lq~~L~sllP~~i~~~l~ 85 (533)
T 2qsf_A 6 AGVEDISVEIKPSSKRNSDARRTSRNVCSNEERKRRKYFHMLYLVCLMVHGFIRNEWINSKRLSRKLSNLVPEKVFELLH 85 (533)
T ss_dssp ---------------------CCCTTBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHGGGSCHHHHHHTS
T ss_pred CCCCCeEEEecCCccccchhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhCCHHHHHhhC
Confidence 345678888876521 221 2234489999999999999999999999999999999999999999999998865433
Q ss_pred cc----------cccccccchhhhhhccceeecccCc---cc-------------c---ch--hhHHHHHHHHhcCCHHH
Q 003292 122 VS----------KLTANALSPIVSWFHDNFHVRSSVS---TR-------------R---SF--HSDLAHALESREGTPEE 170 (833)
Q Consensus 122 ~~----------~~~~~~L~~lv~Wf~~~F~v~~~~~---~~-------------~---~~--~~~l~~~l~~~~Gs~de 170 (833)
+. +...++|+.|+.||+.+|.|+++.. .. . .+ ..+|..++++++|++|+
T Consensus 86 p~~~~~~~~~~~~~~~~~Lk~L~~ww~~~F~it~p~~~~g~~~~~w~e~~~~~~~~~~f~~~~~~~f~~~~~~~~Gs~d~ 165 (533)
T 2qsf_A 86 PQKDEELPLRSTRKLLDGLKKCMELWQKHWKITKKYDNEGLYMRTWKEIEMSANNKRKFKTLKRSDFLRAVSKGHGDPDI 165 (533)
T ss_dssp CCCCSSCTHHHHHHHHHHHHHHHHHHHHHCCEECCCSSCTTSCCCHHHHHHTTTTCCCEECCCHHHHHHHHHHTEECHHH
T ss_pred cCCCccccccchHHHHHHHHHHHHHHHhhEEEcCCccCCCccccCccccchhhccccccccccHHHHHHHHHhcCCChhH
Confidence 21 1124789999999999999987411 00 0 01 24688999999999999
Q ss_pred HHHHHHHHHHhcCCceEEEEeeccccCCcccccccCCCCCCCCcCCCccCCCCccccCccccccCCCccccccccccccc
Q 003292 171 IAALSVALFRALKLTTRFVSILDVASLKPEADKNVSSNQDSSRVGGGIFNAPTLMVAKPEEVLASPVKSFSCDKKENVCE 250 (833)
Q Consensus 171 ~a~LF~aLlRaLgl~~RLV~sLqp~pLkp~~~k~~~~~~~~~~~~~~~~~~~~p~~~k~~~~~~~~~k~~~~~~~~~~~~ 250 (833)
+||||||||||||+.||||+||||+++.... . . .++
T Consensus 166 ~AqlF~aLlRalG~~aRlV~SLqP~~f~~~k---------------------------~-~--~~~-------------- 201 (533)
T 2qsf_A 166 SVQGFVAMLRACNVNARLIMSCQPPDFTNMK---------------------------I-D--TSL-------------- 201 (533)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECCCCTTCCB---------------------------S-C--CCC--------------
T ss_pred HHHHHHHHHHHCCCceEEEeccccccccccc---------------------------c-c--cCc--------------
Confidence 9999999999999999999999998765310 0 0 000
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCcccCCCcccCCCccchhhhccCCChHHHHHHHHHhhcccc
Q 003292 251 TSSKGSPECKYSSPKSNNTQSKKSPVSCELSSGNLDPSSSMACSDISEACHPKEKSQALKRKGDLEFEMQLEMALSATNV 330 (833)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~g~~~~~~q~~~a~~~t~~ 330 (833)
. + ...
T Consensus 202 -----------------------------------------------------~-----k--~~~--------------- 206 (533)
T 2qsf_A 202 -----------------------------------------------------N-----G--NNA--------------- 206 (533)
T ss_dssp -----------------------------------------------------C----------C---------------
T ss_pred -----------------------------------------------------c-----c--CCc---------------
Confidence 0 0 000
Q ss_pred ccCCCCccccccccCCCCCCccccccccccccCCCCCccCCcccccCCccCCCCceEEEEEecCCCCCCceEEEecccc-
Q 003292 331 ATSKSNICSDVKDLNSNSSTVLPVKRLKKIESGESSTSCLGISTAVGSRKVGAPLYWAEVYCSGENLTGKWVHVDAANA- 409 (833)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~~~s~~~~~~~s~~~~~~~~~~P~fWvEV~~~~~~~~~kWI~VDPv~~- 409 (833)
.+.++.+|+||+|||++. +++||||||+++
T Consensus 207 ----------------------------------------------~~~~~~~P~~W~EV~s~~---~~rWi~VDp~~~~ 237 (533)
T 2qsf_A 207 ----------------------------------------------YKDMVKYPIFWCEVWDKF---SKKWITVDPVNLK 237 (533)
T ss_dssp ----------------------------------------------HHHHTTSCSEEEEEEETT---TTEEEEEESSSSC
T ss_pred ----------------------------------------------cccccCCCeEEEEEEEcC---CCeEEEEeccccc
Confidence 001234899999999975 599999999985
Q ss_pred ccc---cchhhhHhH--hhcCCCeeEEEEEcCCC-cccchhhhHhhHhh-hcccccC-----HHHHHHHHhhhhhcccCC
Q 003292 410 IID---GEQKVEAAA--AACKTSLRYIVAFAGCG-AKDVTRRYCMKWYR-IASKRVN-----SAWWDAVLAPLRELESGA 477 (833)
Q Consensus 410 ~Vd---~~~~~Ep~~--~~~~~~msYVVAfd~dG-akDVTrRY~~~~~~-~~rkRv~-----~~Ww~~~L~~~~~~~~~~ 477 (833)
+++ .+..|||.. .++.++|+|||||+.|| |+|||+||+.+|.. +++.|+. ++||+.+|+.|+++
T Consensus 238 ~id~~~~~~~~Ep~~~~~~~~~~m~YViAf~~d~~~kDVT~RY~~~~~~k~rr~Ri~~~~~~~~W~~~~L~~~~~~---- 313 (533)
T 2qsf_A 238 TIEQVRLHSKLAPKGVACCERNMLRYVIAYDRKYGCRDVTRRYAQWMNSKVRKRRITKDDFGEKWFRKVITALHHR---- 313 (533)
T ss_dssp EEECCSSCCTTSCCSTTTTSSCCCCEEEEECTTCCEEECHHHHCTTCCCCCGGGSGGGSHHHHHHHHHHHHHHCCS----
T ss_pred cccccccccccccccccccccCceeEEEEEcCCCceEecchhhhhchhhhhheeeecCCcchHHHHHHHHHHHhcC----
Confidence 444 567899853 25779999999999986 99999999998874 4556764 78999999999853
Q ss_pred CCCCcccccccCcccccCCchHHHHHHHHhccCCCCcChHhhhcCCchhhhhhhccccccCCCCCcceeecc-------e
Q 003292 478 TGDLNVESSAKDSFVADRNSLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPKGPILGFCSG-------H 550 (833)
Q Consensus 478 ~g~~~i~a~~~~~~~~~rd~~Ed~El~~~~~~e~mP~si~~fKnHP~YvLerhL~k~EvI~P~a~~~G~~~g-------E 550 (833)
....+|..||+||+.+..+||||+|+++|||||+|||||||++||+|||+++++|+|+| |
T Consensus 314 -------------~~~~~d~~Ed~el~~~~~~e~~P~s~~~fK~HP~yvLer~L~k~E~i~P~a~~~g~~~~~~k~~~~E 380 (533)
T 2qsf_A 314 -------------KRTKIDDYEDQYFFQRDESEGIPDSVQDLKNHPYYVLEQDIKQTQIVKPGCKECGYLKVHGKVGKVL 380 (533)
T ss_dssp -------------CCCHHHHHHHHHHHHHHHHSCCCSSTGGGTTCSSEEEGGGSCTTEEECTTCCCSEEEECCSTTCCEE
T ss_pred -------------CccccchhHHHHHHHHHhcCCCCccHHHHcCCcHhhhhhhhccceeeCCCCceeeEEecCcCCCccc
Confidence 23467889999999999999999999999999999999999999999999999999987 9
Q ss_pred eeeecCCccccccHHHHHHhcccccCCCcccceeccCCCCCCCCCCCCCCccccccccccccccccccccCCCCCC-CCC
Q 003292 551 AVYPRSCVQTLKTKERWLREALQVKANEVPVKVIKNSSKSKKGQDFEPEDYDEVDARGNIELYGKWQLEPLRLPSA-VNG 629 (833)
Q Consensus 551 ~VY~R~dV~~LkS~e~W~r~GR~VK~gE~P~K~vk~~~~~~k~~~~~~~~~~~~~~~~~~~LYg~wQTe~y~pPp~-vdG 629 (833)
|||+|+||++|||+++|+++||+||+||+|+|+||.++.+.. .+++ ...++|||+||||+|+|||+ +||
T Consensus 381 ~VY~R~~V~~l~S~e~W~~~gR~vk~ge~P~K~v~~r~~~~~----~~~~------~~~~~Ly~~~QTe~y~Pp~~~~dG 450 (533)
T 2qsf_A 381 KVYAKRDIADLKSARQWYMNGRILKTGSRCKKVIKRTVGRPK----GEAE------EEDERLYSFEDTELYIPPLASASG 450 (533)
T ss_dssp EEEEGGGEEECBCHHHHHTTTEEECSSCCCSEEECC----------------------CEEEBCGGGEEECCCCCCCTTC
T ss_pred ceeehhhhheeecHHHHHHcCCccCCCCeeeeEEecccCCcc----cccc------cccccccCHHhCccccCCCCccCC
Confidence 999999999999999999999999999999999998764321 1111 25689999999999999999 999
Q ss_pred CccCCCCCceEeecCCCCCCCeeeecCccHHHHHHHcCCCeeeceeceeecCC-eeeeeEceEEEccccHHHHHHHHHHH
Q 003292 630 IVPRNERGQVDVWSEKCLPPGTVHLRLPRVYSVAKRLEIDSAPAMVGFEFRNG-RSTPVFDGIVVCAEFKDTILEAYAEE 708 (833)
Q Consensus 630 ~VPkN~yGNVdlf~p~MlP~G~vHi~~~~~~rvAkkLgIDyA~AVtGFeF~~g-~a~PvidGIVV~ee~~e~l~~a~~~~ 708 (833)
+||||+|||||||+|+|||+|||||++++++++||+||||||+|||||+|++| +++|||+|||||+||+++|++||++.
T Consensus 451 ~VPkN~yGNvd~~~p~m~P~G~vhi~~~~~~~~ar~L~Idya~Av~GFef~~g~~~~Pv~~GiVV~~e~~~~l~~a~~~~ 530 (533)
T 2qsf_A 451 EITKNTFGNIEVFAPTMIPGNCCLVENPVAIKAARFLGVEFAPAVTSFKFERGSTVKPVLSGIVVAKWLREAIETAIDGI 530 (533)
T ss_dssp CCCCCTTSCEECSSGGGSCTTEEEEECTTHHHHHHHTTCCCEEEEEEECC------CEEEEEEEEETTSHHHHHHHHHTG
T ss_pred cccccCCCCEEeccCCCCCCCcEEecCccHHHHHHHhCCCeeeeeeceeeCCCCcceEEeCeEEEehHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999976 57999999999999999999999764
Q ss_pred H
Q 003292 709 E 709 (833)
Q Consensus 709 ~ 709 (833)
+
T Consensus 531 ~ 531 (533)
T 2qsf_A 531 E 531 (533)
T ss_dssp G
T ss_pred h
Confidence 3
No 2
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=99.93 E-value=4.2e-26 Score=245.71 Aligned_cols=108 Identities=19% Similarity=0.320 Sum_probs=88.0
Q ss_pred ceEEEEEecCCCCCCceEEEeccccccccchhhhHhHhhcCCCeeEEEEEcCCCcccchhhhHhhHhhhcccccCHHHHH
Q 003292 385 LYWAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRYCMKWYRIASKRVNSAWWD 464 (833)
Q Consensus 385 ~fWvEV~~~~~~~~~kWI~VDPv~~~Vd~~~~~Ep~~~~~~~~msYVVAfd~dGakDVTrRY~~~~~~~~rkRv~~~Ww~ 464 (833)
++|+|||+++. ++||||||+++++++|..||. .|+++|+|||||+.|||+|||+||+.+ ..++|.|+++.||.
T Consensus 211 H~W~EV~~~~~---~rWv~vDp~~~~id~P~~ye~---gw~k~msYVIAFs~dgv~DVT~RY~~~-~~lrR~rv~e~wl~ 283 (335)
T 1x3z_A 211 HVWCEYFSNFL---NRWVHVDSCEQSFDQPYIYSI---NWNKKMSYCIAFGKDGVVDVSKRYILQ-NELPRDQIKEEDLK 283 (335)
T ss_dssp EEEEEEEETTT---TEEEEEETTTTEESCTHHHHT---TSCCCBCCEEEEETTEEEECHHHHCSS-SBCCCCSSCHHHHH
T ss_pred cEEEEEEECCC---CCEEEECCCCCccCCCceeec---CCCCceEEEEEEcCCCCEECHHHhCcC-CccccccCCHHHHH
Confidence 59999999753 799999999999999999875 478999999999999999999999998 66677899999999
Q ss_pred HHHhhhhhcccCCCCCCcccccccCcccccCCchHHHHHHH
Q 003292 465 AVLAPLRELESGATGDLNVESSAKDSFVADRNSLEDMELET 505 (833)
Q Consensus 465 ~~L~~~~~~~~~~~g~~~i~a~~~~~~~~~rd~~Ed~El~~ 505 (833)
.+|.+|++..+.. + +...+.....||..|+.||..
T Consensus 284 ~~L~~l~~~~r~~-----~-s~~e~~~L~~Rd~~E~~EL~~ 318 (335)
T 1x3z_A 284 FLCQFITKRLRYS-----L-NDDEIYQLACRDEQEQIELIR 318 (335)
T ss_dssp HHHHHHHHHHHTT-----S-CHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc-----C-CHHHHHHHHHhHHHHHHHhhc
Confidence 9999998542111 1 011123457788889999873
No 3
>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A*
Probab=99.86 E-value=4.2e-21 Score=205.08 Aligned_cols=108 Identities=25% Similarity=0.394 Sum_probs=83.4
Q ss_pred ceEEEEEecCCCCCCceEEEeccccccccchhhhHhHhhcCCCeeEEEEEcCCCcccchhhhHhhHhhh--cccccCHHH
Q 003292 385 LYWAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRYCMKWYRI--ASKRVNSAW 462 (833)
Q Consensus 385 ~fWvEV~~~~~~~~~kWI~VDPv~~~Vd~~~~~Ep~~~~~~~~msYVVAfd~dGakDVTrRY~~~~~~~--~rkRv~~~W 462 (833)
+.|+|||+++. ++||+|||++++++.|..++. .+.+.|+|||||+.||++|||+||+.+|..+ +|.|+++.|
T Consensus 170 HaW~Evy~~g~---~gWv~~Dpt~~~~~~p~~~e~---gwgr~lsYViAf~~D~a~DVT~RY~~~~~~~~~rR~~v~e~w 243 (295)
T 2f4m_A 170 HVWTEVYSPSQ---QRWLHCDACEDVCDKPLLYEI---GWGKKLSYIIAFSKDEVVDVTWRYSCKHDEVMSRRTKVKEEL 243 (295)
T ss_dssp EEEEEEEETTT---TEEEEEETTTTEESCGGGTTT---TSCCCCCCEEEECSSCEEECGGGGCSCHHHHHHHCCSSCHHH
T ss_pred EEEEEEEECCC---CeEEEEeCCcCccCCCceEee---ccCCCceEEEEECCccCccchhhcccchHHHHhhccCCCHHH
Confidence 59999999752 699999999999999988765 3789999999999999999999999999875 456789999
Q ss_pred HHHHHhhhhhcccCCCCCCcccccccCcccccCCchHHHHHH
Q 003292 463 WDAVLAPLRELESGATGDLNVESSAKDSFVADRNSLEDMELE 504 (833)
Q Consensus 463 w~~~L~~~~~~~~~~~g~~~i~a~~~~~~~~~rd~~Ed~El~ 504 (833)
|..+|..|+...+.. + +...+.+...||..|..||.
T Consensus 244 l~~~l~~l~~~~r~~-----~-s~~e~~~l~~Rd~~E~~el~ 279 (295)
T 2f4m_A 244 LRETINGLNKQRQLS-----L-SESRRKELLQRIIVELVEFI 279 (295)
T ss_dssp HHHHHHHHHHHHHTT-----S-CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcc-----C-CHHHHHHHHHhHHHHHHHhc
Confidence 999999998542111 1 01112334556666666664
No 4
>3isr_A Transglutaminase-like enzymes, putative cysteine; protease, hutchinsoni MCSG, structural genomics; 1.90A {Cytophaga hutchinsonii}
Probab=96.13 E-value=0.0042 Score=66.62 Aligned_cols=84 Identities=19% Similarity=0.340 Sum_probs=60.1
Q ss_pred HhhcCcHHHHHHhhcccccccccccCcccccccccchhhhhhccceeecccCccccchhhHHHHHHHHhcCCHHHHHHHH
Q 003292 96 DSVCDDPLIQASLLSLLPSYLLKISEVSKLTANALSPIVSWFHDNFHVRSSVSTRRSFHSDLAHALESREGTPEEIAALS 175 (833)
Q Consensus 96 N~~Cnd~~lqa~llSllp~~~~~~~~~~~~~~~~L~~lv~Wf~~~F~v~~~~~~~~~~~~~l~~~l~~~~Gs~de~a~LF 175 (833)
...|..+.|++++.+++... .-....+..|..|++++|.-....... ......+|+.+.|.=...|+||
T Consensus 120 s~~~~~d~i~~~A~~~~~~~--------~~~~~~~~ai~~~v~~~~~Y~~~~~~~---~~~a~~~l~~~~G~C~d~A~l~ 188 (293)
T 3isr_A 120 SRYCQSDKLQKLAYKEFGKI--------ENVYSKVLAITDWIYNNVEYISGSTNS---QTSAFDTITERAGVCRDFAHLG 188 (293)
T ss_dssp BTTBCGGGSHHHHHHHHTTC--------CSHHHHHHHHHHHHHHHSEECTTSCCT---TCCHHHHHHHCEECHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHhccC--------CCHHHHHHHHHHHHHhhcEEeccCCCC---CCCHHHhhcCCcEehHHHHHHH
Confidence 34566667888877765421 111245678999999988765432211 1123468888999999999999
Q ss_pred HHHHHhcCCceEEEE
Q 003292 176 VALFRALKLTTRFVS 190 (833)
Q Consensus 176 ~aLlRaLgl~~RLV~ 190 (833)
++|||++||+||+|.
T Consensus 189 val~Ra~GIPAR~Vs 203 (293)
T 3isr_A 189 IALCRALSIPARYFT 203 (293)
T ss_dssp HHHHHHTTCCEEEEE
T ss_pred HHHHHHCCCCEEEEE
Confidence 999999999999995
No 5
>3kd4_A Putative protease; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503}
Probab=94.41 E-value=0.037 Score=63.44 Aligned_cols=84 Identities=17% Similarity=0.124 Sum_probs=60.3
Q ss_pred cCcHHHHHHhhcccccccccccCcccccccccchhhhhhccceeecccCccccch-hhHHHHHHHHhcCCHHHHHHHHHH
Q 003292 99 CDDPLIQASLLSLLPSYLLKISEVSKLTANALSPIVSWFHDNFHVRSSVSTRRSF-HSDLAHALESREGTPEEIAALSVA 177 (833)
Q Consensus 99 Cnd~~lqa~llSllp~~~~~~~~~~~~~~~~L~~lv~Wf~~~F~v~~~~~~~~~~-~~~l~~~l~~~~Gs~de~a~LF~a 177 (833)
..++.+++++..|+-... -....+..+..|.+++++-..-.....++ ......+|+.+.|+=-..++||+|
T Consensus 225 ~~~~~i~~~a~~l~~~~~--------~~~ek~~~iy~~V~~~i~y~~~~~~~~g~~~~~a~~vl~~~~G~C~d~a~Ll~A 296 (506)
T 3kd4_A 225 SQGYESKTFAQFLTDKSG--------NEQEKVNIIRDHILNNLSTCPIPMAMTGYTVRDIDTVLRSAYGTPLEIAQLLNV 296 (506)
T ss_dssp SCCHHHHHHHHHHHSSCS--------SHHHHHHHHHHHHHHHCEECCCCGGGGTTCCCCHHHHHHHTEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHhccEecceecccCCCCCCCHHHHHHhCCcchHHHHHHHHH
Confidence 678999999988875311 11233456888988888754321111111 124568999999999999999999
Q ss_pred HHHhcCCceEEEE
Q 003292 178 LFRALKLTTRFVS 190 (833)
Q Consensus 178 LlRaLgl~~RLV~ 190 (833)
||||+||+||+|+
T Consensus 297 llRa~GIpA~~v~ 309 (506)
T 3kd4_A 297 MLNAAGIPSEVLA 309 (506)
T ss_dssp HHHHTTCCEEEEE
T ss_pred HHHHCCCCcEEEE
Confidence 9999999999996
No 6
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=85.19 E-value=0.79 Score=54.59 Aligned_cols=37 Identities=22% Similarity=0.182 Sum_probs=29.7
Q ss_pred HHHHHHHhc----CCHHHHHHHHHHHHHhcCCceEEEEeec
Q 003292 157 LAHALESRE----GTPEEIAALSVALFRALKLTTRFVSILD 193 (833)
Q Consensus 157 l~~~l~~~~----Gs~de~a~LF~aLlRaLgl~~RLV~sLq 193 (833)
|..-+..++ |-=+..|++||+|||+|||+||+|...+
T Consensus 299 l~~~~~~~~PV~~G~C~~fA~v~~~~lR~lGIPaRvVtgy~ 339 (731)
T 1ex0_A 299 LLEYRSSENPVRYGQCWVFAGVFNTFLRCLGIPARIVTNYF 339 (731)
T ss_dssp HHHHHHHTSCEEEECHHHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred HHHHHhcCCccceeeehhHHHHHHHHHHhCCCCeeEEcccc
Confidence 444445455 8889999999999999999999997443
No 7
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=84.97 E-value=0.7 Score=54.70 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=29.6
Q ss_pred HHHHHHHh-----cCCHHHHHHHHHHHHHhcCCceEEEEeec
Q 003292 157 LAHALESR-----EGTPEEIAALSVALFRALKLTTRFVSILD 193 (833)
Q Consensus 157 l~~~l~~~-----~Gs~de~a~LF~aLlRaLgl~~RLV~sLq 193 (833)
|..-++++ .|-=+..|++||+|||+|||+||+|..++
T Consensus 256 l~~~~~~~~~PV~~G~C~~fA~v~~t~lR~lGIPaR~Vtgy~ 297 (695)
T 1g0d_A 256 LQQWSKAGVRPVKYGQCWVFAAVACTVLRCLGIPTRPITNFA 297 (695)
T ss_dssp HHHHHHTTSCCEEEECHHHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred HHHHHHcCCCcccceeeHHHHHHHHHHHHhCCCCeeEEcccc
Confidence 44445544 38889999999999999999999997444
No 8
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=84.82 E-value=0.72 Score=54.69 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=25.7
Q ss_pred cCCHHHHHHHHHHHHHhcCCceEEEEeec
Q 003292 165 EGTPEEIAALSVALFRALKLTTRFVSILD 193 (833)
Q Consensus 165 ~Gs~de~a~LF~aLlRaLgl~~RLV~sLq 193 (833)
.|-=+..|+++|+|||+|||+||+|...+
T Consensus 269 ~G~C~~fA~~~~~~lR~lGIPaR~Vtgy~ 297 (692)
T 1vjj_A 269 YGQCWVFAGTLNTALRSLGIPSRVITNFN 297 (692)
T ss_dssp EECHHHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred ceeeHHHHHHHHHHHHhCCCCeeEEcccc
Confidence 37788999999999999999999997554
No 9
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=83.53 E-value=0.77 Score=54.47 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=25.3
Q ss_pred cCCHHHHHHHHHHHHHhcCCceEEEEee
Q 003292 165 EGTPEEIAALSVALFRALKLTTRFVSIL 192 (833)
Q Consensus 165 ~Gs~de~a~LF~aLlRaLgl~~RLV~sL 192 (833)
.|.=+..|++||+|||+|||+||+|...
T Consensus 274 ~G~C~dfA~~~~~llRalGIPAR~VsGy 301 (687)
T 2q3z_A 274 YGQCWVFAAVACTVLRCLGIPTRVVTNY 301 (687)
T ss_dssp EECHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred eeehHHHHHHHHHHHHhCCCCcEEEeec
Confidence 5888899999999999999999999643
No 10
>3isr_A Transglutaminase-like enzymes, putative cysteine; protease, hutchinsoni MCSG, structural genomics; 1.90A {Cytophaga hutchinsonii}
Probab=49.09 E-value=8.9 Score=40.84 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=19.2
Q ss_pred CCceEEEEEecCCCCCCceEEEeccccc
Q 003292 383 APLYWAEVYCSGENLTGKWVHVDAANAI 410 (833)
Q Consensus 383 ~P~fWvEV~~~~~~~~~kWI~VDPv~~~ 410 (833)
..+-|+|||.+ +.|+.+||.++.
T Consensus 213 ~~HAW~Evyl~-----ggWv~~DpT~~~ 235 (293)
T 3isr_A 213 DFHACFEAYIG-----GNWIIFDATRLV 235 (293)
T ss_dssp CEEEEEEEEET-----TEEEEECTTCCS
T ss_pred CeEEEEEEEEC-----CcEEEEECCCCC
Confidence 35899999985 589999999753
No 11
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=39.29 E-value=8.9 Score=32.74 Aligned_cols=19 Identities=32% Similarity=0.793 Sum_probs=16.2
Q ss_pred cceeecccCCCceEEEeeC
Q 003292 815 NSVTTKRCHCGFTIQVEEL 833 (833)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~ 833 (833)
....|+.|+||-.|+|+.+
T Consensus 17 ~~~kT~~C~CG~~~~~~k~ 35 (71)
T 1gh9_A 17 EGAKTRKCVCGRTVNVKDR 35 (71)
T ss_dssp TTCSEEEETTTEEEECCSS
T ss_pred CCCcEEECCCCCeeeeceE
Confidence 3678999999999999764
No 12
>1m45_B IQ2, IQ2 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae}
Probab=25.10 E-value=78 Score=21.37 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 003292 723 QATSRWYQLLSSIVTRQRLNNC 744 (833)
Q Consensus 723 ~aL~~Wk~Ll~~L~IreRL~~~ 744 (833)
+|++.-..-++|..||+|++++
T Consensus 4 qaikylqnnikgfiirqrvnde 25 (26)
T 1m45_B 4 QAIKYLQNNIKGFIIRQRVNDE 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccceEEEeeecccC
Confidence 4556666778999999999875
No 13
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=21.26 E-value=40 Score=29.59 Aligned_cols=31 Identities=32% Similarity=0.608 Sum_probs=23.0
Q ss_pred ccccccccccCcccccceeecccCCCceEEEe
Q 003292 800 HEHVYLIEDQSFDEENSVTTKRCHCGFTIQVE 831 (833)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (833)
|+.+-+ ||-.||+++.+-+..|+||=..+|.
T Consensus 5 ~dev~l-eDm~~de~~~~y~ypCrCGd~F~it 35 (83)
T 1yop_A 5 YDEIEI-EDMTFEPENQMFTYPCPCGDRFQIY 35 (83)
T ss_dssp SBCCBG-GGSEEETTTTEEEEEETTTEEEEEE
T ss_pred eeEEEH-HHcEEcCCCCEEEEeCCCCCeEEEC
Confidence 344444 4588999999999999999666654
No 14
>2jtx_A Transcription initiation factor IIE subunit alpha; TFIIE, TFIIH, activation domains, transcription regulation; NMR {Homo sapiens} PDB: 2rnq_A 2rnr_A
Probab=20.73 E-value=69 Score=29.33 Aligned_cols=20 Identities=20% Similarity=0.124 Sum_probs=16.0
Q ss_pred cccccChHHHHHHHHHHHHH
Q 003292 65 PVRRASAEDKELAELVHKVH 84 (833)
Q Consensus 65 ~~RR~t~~eKe~~~~~HKvH 84 (833)
-+.+||..||+.-+.+++-|
T Consensus 81 lv~~MTp~EKEaYi~v~Q~~ 100 (106)
T 2jtx_A 81 LVAQMTPEEKEAYIAMGQRM 100 (106)
T ss_dssp HHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHH
Confidence 36789999999988877644
Done!