BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003293
(833 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 182 bits (462), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 92/160 (57%), Positives = 120/160 (75%), Gaps = 8/160 (5%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLH 64
LE G+ +R TG+T++N+ SSRSH +FT+TLEQ R +P L +P + L +K H
Sbjct: 193 LEMGNAARHTGATHLNHLSSRSHTVFTVTLEQ-RGRAPSRLPRPAPGQ-----LLVSKFH 246
Query: 65 LVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLT 124
VDLAGSER +TGS G R KE + IN LLALGNVISALGD ++R G H+PYRDSK+T
Sbjct: 247 FVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRR--GSHIPYRDSKIT 304
Query: 125 RLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRAR 164
R+L+DSLGGN++TVMIAC+SP+ + +ETLNTL YA+RA+
Sbjct: 305 RILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 182 bits (461), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 99/174 (56%), Positives = 118/174 (67%), Gaps = 17/174 (9%)
Query: 4 CLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYL-CAK 62
+ G+ +R+ G+TNMN SSRSHAIF IT+E S V L E ++ K
Sbjct: 206 VMNVGNQNRSVGATNMNEHSSRSHAIFVITIE----CSEVGLD--------GENHIRVGK 253
Query: 63 LHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSK 122
L+LVDLAGSER +TG+ G R KE IN L ALGNVISAL D K H+PYRDSK
Sbjct: 254 LNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKS----THIPYRDSK 309
Query: 123 LTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVNRDP 176
LTRLLQDSLGGN++TVM+A + PA N EETL TL+YANRA+NI+NKP VN DP
Sbjct: 310 LTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDP 363
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 172 bits (437), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 119/160 (74%), Gaps = 8/160 (5%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLH 64
LE G+ +R TG+T++N+ SSRSH +FT+TL+Q R +P L +P + L +K H
Sbjct: 193 LEMGNAARHTGATHLNHLSSRSHTVFTVTLKQ-RGRAPSRLPRPAPGQ-----LLVSKFH 246
Query: 65 LVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLT 124
VDLAGSER +TGS G KE + IN LLALGNVISALGD ++R G ++PYRDSK+T
Sbjct: 247 FVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRR--GSNIPYRDSKIT 304
Query: 125 RLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRAR 164
R+L+DSLGGN++TVMIAC+SP+ + +ETLNTL YA+RA+
Sbjct: 305 RILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/162 (52%), Positives = 114/162 (70%), Gaps = 13/162 (8%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLH 64
L+ G+ +R T+MN SSRSHA+F I L Q K + S+N+ AK+
Sbjct: 207 LDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTA-----------SINQNVRIAKMS 255
Query: 65 LVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLT 124
L+DLAGSERA +G+ G RF EG +INR LLALGNVI+AL D K++ + H+PYR+SKLT
Sbjct: 256 LIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQ--HIPYRNSKLT 313
Query: 125 RLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNI 166
RLL+DSLGGN +T+MIA +SP+ + ++T NTLKYANRA++I
Sbjct: 314 RLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/177 (48%), Positives = 114/177 (64%), Gaps = 19/177 (10%)
Query: 1 MAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYL- 59
++A +++G +R +T MN+ SSRSH+IF + +E + N+E +
Sbjct: 187 LSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIE-------------NKEVIR 233
Query: 60 CAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYR 119
KL+LVDLAGSER +TG+ G EG IN L ALG VIS L + H+PYR
Sbjct: 234 VGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEG-----ATHIPYR 288
Query: 120 DSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVNRDP 176
DSKLTRLLQDSLGGNS+T+M A ISPA N +ET++TL+YA+RA+ I+NKP +N DP
Sbjct: 289 DSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDP 345
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 21/186 (11%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESM-NEEYLCAKL 63
+E+G +R TNMN SSRSH++F I ++Q E++ N++ L KL
Sbjct: 190 IEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQ---------------ENLENQKKLSGKL 234
Query: 64 HLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKL 123
+LVDLAGSE+ +TG++G E +IN+ L ALGNVISAL D K H+PYRDSKL
Sbjct: 235 YLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNK----THIPYRDSKL 290
Query: 124 TRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVNRDPMSTEMLK 183
TR+LQ+SLGGN+RT ++ C SPA N ET +TL + RA+ ++N VN + ++ E K
Sbjct: 291 TRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEE-LTAEEWK 349
Query: 184 MRQQLE 189
R + E
Sbjct: 350 RRYEKE 355
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/201 (44%), Positives = 118/201 (58%), Gaps = 41/201 (20%)
Query: 4 CLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYL-CAK 62
+ G+ +RA GST+MN SSRSHAIF IT+E S S ++++ K
Sbjct: 206 VMNLGNQTRAVGSTHMNEVSSRSHAIFIITVE------------CSERGSDGQDHIRVGK 253
Query: 63 LHLVDLAGSERAKRTGSDGL------------------------RFKEGVHINRGLLALG 98
L+LVDLAGSER + G + R KE IN L ALG
Sbjct: 254 LNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSALG 313
Query: 99 NVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLK 158
NVI+AL ++ H+PYRDSKLTRLLQDSLGGN++T+M+A + PA + +E+L+TL+
Sbjct: 314 NVIAALAGNRS----THIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLR 369
Query: 159 YANRARNIQNKPIVNRDPMST 179
+ANRA+NI+NKP VN DP T
Sbjct: 370 FANRAKNIKNKPRVNEDPKDT 390
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 149 bits (376), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 86/176 (48%), Positives = 116/176 (65%), Gaps = 17/176 (9%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLH 64
++ G+ +R +TNMN SSRSHA+F I Q R D+ N + + +K+
Sbjct: 196 MDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRH-------DAETNITTEK---VSKIS 245
Query: 65 LVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGD-------DKKRKEGVHVP 117
LVDLAGSERA TG+ G R KEG +IN+ L LG VISAL + +KK+K+ +P
Sbjct: 246 LVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIP 305
Query: 118 YRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVN 173
YRDS LT LL+++LGGNSRT M+A +SPADIN +ETL+TL+YA+RA+ I+N VN
Sbjct: 306 YRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 149 bits (376), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 86/176 (48%), Positives = 116/176 (65%), Gaps = 17/176 (9%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLH 64
++ G+ +R +TNMN SSRSHA+F I Q R D+ N + + +K+
Sbjct: 212 MDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRH-------DAETNITTEK---VSKIS 261
Query: 65 LVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGD-------DKKRKEGVHVP 117
LVDLAGSERA TG+ G R KEG +IN+ L LG VISAL + +KK+K+ +P
Sbjct: 262 LVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIP 321
Query: 118 YRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVN 173
YRDS LT LL+++LGGNSRT M+A +SPADIN +ETL+TL+YA+RA+ I+N VN
Sbjct: 322 YRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 377
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 149 bits (375), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 86/176 (48%), Positives = 116/176 (65%), Gaps = 17/176 (9%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLH 64
++ G+ +R +TNMN SSRSHA+F I Q R D+ N + + +K+
Sbjct: 196 MDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRH-------DAETNITTEK---VSKIS 245
Query: 65 LVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGD-------DKKRKEGVHVP 117
LVDLAGSERA TG+ G R KEG +IN+ L LG VISAL + +KK+K+ +P
Sbjct: 246 LVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIP 305
Query: 118 YRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVN 173
YRDS LT LL+++LGGNSRT M+A +SPADIN +ETL+TL+YA+RA+ I+N VN
Sbjct: 306 YRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/176 (48%), Positives = 115/176 (65%), Gaps = 17/176 (9%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLH 64
++ G+ R +TNMN SSRSHA+F I Q R D+ N + + +K+
Sbjct: 196 MDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRH-------DAETNITTEK---VSKIS 245
Query: 65 LVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGD-------DKKRKEGVHVP 117
LVDLAGSERA TG+ G R KEG +IN+ L LG VISAL + +KK+K+ +P
Sbjct: 246 LVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIP 305
Query: 118 YRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVN 173
YRDS LT LL+++LGGNSRT M+A +SPADIN +ETL+TL+YA+RA+ I+N VN
Sbjct: 306 YRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/173 (49%), Positives = 116/173 (67%), Gaps = 20/173 (11%)
Query: 4 CLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLC--A 61
LE+G+ R T +T MN SSRSH++F++T+ M++ +++ E L
Sbjct: 213 ILEKGAAKRTTAATLMNAYSSRSHSVFSVTI-HMKE------------TTIDGEELVKIG 259
Query: 62 KLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDS 121
KL+LVDLAGSE R+G+ R +E +IN+ LL LG VI+AL + HVPYR+S
Sbjct: 260 KLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP-----HVPYRES 314
Query: 122 KLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVNR 174
KLTR+LQDSLGG +RT +IA ISPA +N EETL+TL+YA+RA+NI NKP VN+
Sbjct: 315 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/172 (49%), Positives = 116/172 (67%), Gaps = 20/172 (11%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLC--AK 62
LE+G+ R T +T MN SSRSH++F++T+ M++ +++ E L K
Sbjct: 214 LEKGAAKRTTAATLMNAYSSRSHSVFSVTI-HMKE------------TTIDGEELVKIGK 260
Query: 63 LHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSK 122
L+LVDLAGSE R+G+ R +E +IN+ LL LG VI+AL + HVPYR+SK
Sbjct: 261 LNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP-----HVPYRESK 315
Query: 123 LTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVNR 174
LTR+LQDSLGG +RT +IA ISPA +N EETL+TL+YA+RA+NI NKP VN+
Sbjct: 316 LTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/172 (49%), Positives = 116/172 (67%), Gaps = 20/172 (11%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLC--AK 62
LE+G+ R T +T MN SSRSH++F++T+ M++ +++ E L K
Sbjct: 214 LEKGAAKRTTAATLMNAYSSRSHSVFSVTI-HMKE------------TTIDGEELVKIGK 260
Query: 63 LHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSK 122
L+LVDLAGSE R+G+ R +E +IN+ LL LG VI+AL + HVPYR+SK
Sbjct: 261 LNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP-----HVPYRESK 315
Query: 123 LTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVNR 174
LTR+LQDSLGG +RT +IA ISPA +N EETL+TL+YA+RA+NI NKP VN+
Sbjct: 316 LTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/172 (49%), Positives = 116/172 (67%), Gaps = 20/172 (11%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLC--AK 62
LE+G+ R T +T MN SSRSH++F++T+ M++ +++ E L K
Sbjct: 214 LEKGAAKRTTAATLMNAYSSRSHSVFSVTI-HMKE------------TTIDGEELVKIGK 260
Query: 63 LHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSK 122
L+LVDLAGSE R+G+ R +E +IN+ LL LG VI+AL + HVPYR+SK
Sbjct: 261 LNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP-----HVPYRESK 315
Query: 123 LTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVNR 174
LTR+LQDSLGG +RT +IA ISPA +N EETL+TL+YA+RA+NI NKP VN+
Sbjct: 316 LTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/161 (52%), Positives = 105/161 (65%), Gaps = 11/161 (6%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLH 64
+ +G+ SR +TNMN +SSRSHA+F ITL L V G S KL
Sbjct: 198 MSEGNKSRTVAATNMNEESSRSHAVFKITLTHT--LYDVKSGTSGEK--------VGKLS 247
Query: 65 LVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRK-EGVHVPYRDSKL 123
LVDLAGSERA +TG+ G R KEG +IN+ L LG VISAL D K + VPYRDS L
Sbjct: 248 LVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVL 307
Query: 124 TRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRAR 164
T LL+DSLGGNS+T M+A +SPA N +ETL+TL+YA+RA+
Sbjct: 308 TWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/172 (49%), Positives = 116/172 (67%), Gaps = 20/172 (11%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLC--AK 62
LE+G+ R T +T MN SSRSH++F++T+ M++ +++ E L K
Sbjct: 216 LEKGAAKRTTAATLMNAYSSRSHSVFSVTI-HMKE------------TTIDGEELVKIGK 262
Query: 63 LHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSK 122
L+LVDLAGSE R+G+ R +E +IN+ LL LG VI+AL + HVPYR+SK
Sbjct: 263 LNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP-----HVPYRESK 317
Query: 123 LTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVNR 174
LTR+LQDSLGG +RT +IA ISPA +N EETL+TL+YA+RA+NI NKP VN+
Sbjct: 318 LTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 369
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/172 (49%), Positives = 116/172 (67%), Gaps = 20/172 (11%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLC--AK 62
LE+G+ R T +T MN SSRSH++F++T+ M++ +++ E L K
Sbjct: 214 LEKGAAKRTTAATLMNAYSSRSHSVFSVTI-HMKE------------TTIDGEELVKIGK 260
Query: 63 LHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSK 122
L+LVDLAGSE R+G+ R +E +IN+ LL LG VI+AL + HVPYR+SK
Sbjct: 261 LNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP-----HVPYRESK 315
Query: 123 LTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVNR 174
LTR+LQDSLGG +RT +IA ISPA +N EETL+TL+YA+RA+NI NKP VN+
Sbjct: 316 LTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/172 (49%), Positives = 116/172 (67%), Gaps = 20/172 (11%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLC--AK 62
LE+G+ R T +T MN SSRSH++F++T+ M++ +++ E L K
Sbjct: 213 LEKGAAKRTTAATLMNAYSSRSHSVFSVTI-HMKE------------TTIDGEELVKIGK 259
Query: 63 LHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSK 122
L+LVDLAGSE R+G+ R +E +IN+ LL LG VI+AL + HVPYR+SK
Sbjct: 260 LNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP-----HVPYRESK 314
Query: 123 LTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVNR 174
LTR+LQDSLGG +RT +IA ISPA +N EETL+TL+YA+RA+NI NKP VN+
Sbjct: 315 LTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 366
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/172 (49%), Positives = 116/172 (67%), Gaps = 20/172 (11%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLC--AK 62
LE+G+ R T +T MN SSRSH++F++T+ M++ +++ E L K
Sbjct: 205 LEKGAAKRTTAATLMNAYSSRSHSVFSVTI-HMKE------------TTIDGEELVKIGK 251
Query: 63 LHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSK 122
L+LVDLAGSE R+G+ R +E +IN+ LL LG VI+AL + HVPYR+SK
Sbjct: 252 LNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP-----HVPYRESK 306
Query: 123 LTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVNR 174
LTR+LQDSLGG +RT +IA ISPA +N EETL+TL+YA+RA+NI NKP VN+
Sbjct: 307 LTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/172 (50%), Positives = 115/172 (66%), Gaps = 19/172 (11%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYL-CAKL 63
LE+G R T +T MN QSSRSH +F+I + +R+ N E+ L KL
Sbjct: 215 LEKGKERRKTATTLMNAQSSRSHTVFSIVV-HIRE-----------NGIEGEDMLKIGKL 262
Query: 64 HLVDLAGSERAKRTGSD-GLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSK 122
+LVDLAGSE + G++ G+R +E V+IN+ LL LG VI+AL D HVPYR+SK
Sbjct: 263 NLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVD-----RAPHVPYRESK 317
Query: 123 LTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVNR 174
LTRLLQ+SLGG ++T +IA ISP + EETL+TL+YA+RA+NIQNKP VN+
Sbjct: 318 LTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQ 369
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 113/168 (67%), Gaps = 20/168 (11%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLC--AK 62
LE+G+ R T +T MN SSRSH++F++T+ M++ +++ E L K
Sbjct: 199 LEKGAAKRTTAATLMNAYSSRSHSVFSVTI-HMKE------------TTIDGEELVKIGK 245
Query: 63 LHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSK 122
L+LVDLAGSE R+G+ R +E +IN+ LL LG VI+AL + HVPYR+SK
Sbjct: 246 LNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP-----HVPYRESK 300
Query: 123 LTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKP 170
LTR+LQDSLGG +RT +IA ISPA +N EETL+TL+YA+RA+NI NKP
Sbjct: 301 LTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKP 348
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 103/169 (60%), Gaps = 19/169 (11%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLH 64
+++G +R TNMN SSRSH+IF I ++Q + E+ L KL+
Sbjct: 183 IDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQ--------------ENTQTEQKLSGKLY 228
Query: 65 LVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLT 124
LVDLAGSE+ +TG++G E +IN+ L ALGNVISAL + +VPYRDSK+T
Sbjct: 229 LVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGS-----TYVPYRDSKMT 283
Query: 125 RLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVN 173
R+LQDSLGGN RT ++ C SP+ N ET +TL + RA+ I+N VN
Sbjct: 284 RILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVN 332
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/181 (45%), Positives = 111/181 (61%), Gaps = 18/181 (9%)
Query: 4 CLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKL 63
+ +G +RA +TNMN +SSRSH+IF IT+ Q V G + +L
Sbjct: 186 VMRRGGNARAVAATNMNQESSRSHSIFVITITQKN----VETGSAK----------SGQL 231
Query: 64 HLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKL 123
LVDLAGSE+ +TG+ G +E IN+ L ALG VI+AL D K HVPYRDSKL
Sbjct: 232 FLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSS----HVPYRDSKL 287
Query: 124 TRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVNRDPMSTEMLK 183
TR+LQ+SLGGNSRT +I SP+ N ETL+TL++ RA++I+NK VN + E+ +
Sbjct: 288 TRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAELKQ 347
Query: 184 M 184
M
Sbjct: 348 M 348
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 103/169 (60%), Gaps = 19/169 (11%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLH 64
+++G +R TNMN SSRSH+IF I ++Q + E+ L KL+
Sbjct: 183 IDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQ--------------ENTQTEQKLSGKLY 228
Query: 65 LVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLT 124
LVDLAGSE+ +TG++G E +IN+ L ALGNVISAL + +VPYRDSK+T
Sbjct: 229 LVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGS-----TYVPYRDSKMT 283
Query: 125 RLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVN 173
R+LQDSLGGN RT ++ C SP+ N ET +TL + RA+ I+N VN
Sbjct: 284 RILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVN 332
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 142 bits (357), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/183 (46%), Positives = 111/183 (60%), Gaps = 29/183 (15%)
Query: 8 GSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVD 67
G SR ST MN+ SSRSHA+FTI L+Q+ + D++ S ++ LVD
Sbjct: 250 GDGSRTVASTKMNDTSSRSHAVFTIMLKQIHH--DLETDDTTERSS--------RIRLVD 299
Query: 68 LAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKK--------------RKEG 113
LAGSERAK T + G R +EG +IN+ L LG VI+AL D K R G
Sbjct: 300 LAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPG 359
Query: 114 VH---VPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKP 170
VPYRDS LT LL+DSLGGNS+T MIACISP D +ETL+TL+YA++A+ I+ +
Sbjct: 360 PANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPTDY--DETLSTLRYADQAKRIRTRA 417
Query: 171 IVN 173
+VN
Sbjct: 418 VVN 420
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 99/162 (61%), Gaps = 19/162 (11%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLH 64
+++G +R TNMN SSRSH+IF I ++Q + E+ L KL+
Sbjct: 183 IDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQ--------------ENTQTEQKLSGKLY 228
Query: 65 LVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLT 124
LVDLAGSE+ +TG++G E +IN+ L ALGNVISAL + +VPYRDSK+T
Sbjct: 229 LVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGS-----TYVPYRDSKMT 283
Query: 125 RLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNI 166
R+LQDSLGGN RT ++ C SP+ N ET +TL + RA+ I
Sbjct: 284 RILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 114/196 (58%), Gaps = 21/196 (10%)
Query: 4 CLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKL 63
LE+GS R TNMN +SSRSH I ++ +E + + + KL
Sbjct: 192 ILERGSERRHVSGTNMNEESSRSHLILSVVIESI--------------DLQTQSAARGKL 237
Query: 64 HLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKL 123
VDLAGSER K++GS G + KE IN+ L ALG+VI AL + H+PYR+ KL
Sbjct: 238 SFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQ-----HIPYRNHKL 292
Query: 124 TRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVNRDPMSTEMLK 183
T L+ DSLGGN++T+M +SPA+ N +ET N+L YA+R R I N P ++ S EM++
Sbjct: 293 TMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIVNDP--SKHISSKEMVR 350
Query: 184 MRQQLEFLQAELCARG 199
+++ + + + + +G
Sbjct: 351 LKKLVAYWKEQAGKKG 366
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 105/169 (62%), Gaps = 14/169 (8%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLH 64
+ +G SR G T MN +SSRSH IF + LE K P + S + L+
Sbjct: 181 ITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVK---------VSHLN 231
Query: 65 LVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLT 124
LVDLAGSERA +TG+ G+R KEG +INR L LG VI L D + G + YRDSKLT
Sbjct: 232 LVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQV---GGFINYRDSKLT 288
Query: 125 RLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVN 173
R+LQ+SLGGN++T +I I+P ++ +ETL L++A+ A+ ++N P VN
Sbjct: 289 RILQNSLGGNAKTRIICTITP--VSFDETLTALQFASTAKYMKNTPYVN 335
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 122/209 (58%), Gaps = 23/209 (11%)
Query: 1 MAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMR-KLSPVSLGDSSPNESMNEEYL 59
+ +++GS R T T MN QSSRSH I ++ +E + ++ G
Sbjct: 181 LKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARG------------- 227
Query: 60 CAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYR 119
KL VDLAGSER K++GS G + KE IN+ L ALG+VISAL + H+PYR
Sbjct: 228 --KLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQ-----HIPYR 280
Query: 120 DSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVNRDPMST 179
+ KLT L+ DSLGGN++T+M ISPA+ N +ET N+L YA+R R+I N P +++ S
Sbjct: 281 NHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDP--SKNVSSK 338
Query: 180 EMLKMRQQLEFLQAELCARGGGSSSDEVQ 208
E+ ++++ + + + + +G +E+Q
Sbjct: 339 EVARLKKLVSYWKEQAGRKGDDEELEEIQ 367
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 103/164 (62%), Gaps = 19/164 (11%)
Query: 4 CLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKL 63
E G +R T TN+N SSRSHA+ +T+ + D S KL
Sbjct: 185 VFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGV---------DCSTGLRTT-----GKL 230
Query: 64 HLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKL 123
+LVDLAGSER ++G++G R +E HIN+ L ALG+VI+AL + ++G HVP+R+SKL
Sbjct: 231 NLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAAL----RSRQG-HVPFRNSKL 285
Query: 124 TRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQ 167
T LLQDSL G+S+T+M+ +SP + N ETL +LK+A R R+++
Sbjct: 286 TYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVE 329
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 99/165 (60%), Gaps = 18/165 (10%)
Query: 9 SLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDL 68
S +R G+T +N +SSRSHA+ + ++Q +L+P + KL+L+DL
Sbjct: 208 SRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQRE-------------GKLYLIDL 254
Query: 69 AGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQ 128
AGSE +RTG+ GLR KE IN L LG V+ AL R VPYRDSKLTRLLQ
Sbjct: 255 AGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPR-----VPYRDSKLTRLLQ 309
Query: 129 DSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVN 173
DSLGG++ +++IA I+P +T++ L +A R++ + N+P N
Sbjct: 310 DSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTN 354
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 95/163 (58%), Gaps = 18/163 (11%)
Query: 3 ACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAK 62
L Q + R+T +T N+ SSRSH+IF I L+ S+ +E
Sbjct: 566 TILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYN--------------SLTKESSYGT 611
Query: 63 LHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSK 122
L+L+DLAGSER + ++G R KE IN+ L LG+VI +L K+G HVPYR+SK
Sbjct: 612 LNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSL----NLKDGSHVPYRNSK 667
Query: 123 LTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARN 165
LT LL+ SLGGNS+T+M ISP + ET+N+L++A + N
Sbjct: 668 LTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNN 710
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 94/163 (57%), Gaps = 18/163 (11%)
Query: 3 ACLEQGSLSRATGSTNMNNQSSRSHAIFTITLE-QMRKLSPVSLGDSSPNESMNEEYLCA 61
+ L +G +R S MN SSRSH IFTI LE R LS E+Y+ +
Sbjct: 212 SLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLS-------------EEKYITS 258
Query: 62 KLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDS 121
K++LVDLAGSER ++GS+G KE +IN+ L L I ALGD K+ H+P+R
Sbjct: 259 KINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRD----HIPFRQC 314
Query: 122 KLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRAR 164
KLT L+DSLGGN V++ I EETL++L++A+R +
Sbjct: 315 KLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMK 357
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 92/164 (56%), Gaps = 26/164 (15%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLH 64
++ G+ R +G T+ N SSRSHA+F I L + KL K
Sbjct: 281 IDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKLH-------------------GKFS 321
Query: 65 LVDLAGSERAKRTGSDGLRFK-EGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKL 123
L+DLAG+ER T S + + EG IN+ LLAL I ALG +K H P+R SKL
Sbjct: 322 LIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKP-----HTPFRASKL 376
Query: 124 TRLLQDS-LGGNSRTVMIACISPADINAEETLNTLKYANRARNI 166
T++L+DS +G NSRT MIA ISP + E TLNTL+YANR + +
Sbjct: 377 TQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 110 bits (274), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 89/164 (54%), Gaps = 26/164 (15%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLH 64
+ GS R +G T N+ SSRSHA F I L +L K
Sbjct: 263 INMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLH-------------------GKFS 303
Query: 65 LVDLAGSERAKRTGS-DGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKL 123
LVDLAG+ER T S D EG IN+ LLAL I ALG +K H P+R+SKL
Sbjct: 304 LVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-----AHTPFRESKL 358
Query: 124 TRLLQDS-LGGNSRTVMIACISPADINAEETLNTLKYANRARNI 166
T++L+DS +G NSRT MIA ISP + E TLNTL+YA+R + +
Sbjct: 359 TQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 402
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 108 bits (271), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 90/164 (54%), Gaps = 26/164 (15%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLH 64
++ GS R +G T N+ SSRSHA F I L ++ K
Sbjct: 243 IDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRMH-------------------GKFS 283
Query: 65 LVDLAGSERAKRTGS-DGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKL 123
LVDLAG+ER T S D EG IN+ LLAL I ALG +K H P+R+SKL
Sbjct: 284 LVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-----AHTPFRESKL 338
Query: 124 TRLLQDS-LGGNSRTVMIACISPADINAEETLNTLKYANRARNI 166
T++L+DS +G NSRT MIA ISP + E TLNTL+YA+R + +
Sbjct: 339 TQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKEL 382
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 98/172 (56%), Gaps = 28/172 (16%)
Query: 8 GSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVD 67
G L R G + N++SSRSHAI I L+ + K N S+ K+ +D
Sbjct: 194 GVLLRKIGVNSQNDESSRSHAILNIDLKDINK-----------NTSL------GKIAFID 236
Query: 68 LAGSERAKRTGSDGLRFK-EGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRL 126
LAGSER T S + + +G +INR LLAL I A+ DK H+P+RDS+LT++
Sbjct: 237 LAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKN-----HIPFRDSELTKV 291
Query: 127 LQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARN-----IQNKPIVN 173
L+D G S+++MIA ISP E+TLNTL+Y++R +N ++ KPI N
Sbjct: 292 LRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKGNSKLEGKPIPN 343
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 89/164 (54%), Gaps = 26/164 (15%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLH 64
+ GS R +G T N+ SSRSHA F I L +L K
Sbjct: 191 INMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLH-------------------GKFS 231
Query: 65 LVDLAGSERAKRTGS-DGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKL 123
LVDLAG+ER T S D EG IN+ LLAL I ALG +K H P+R+SKL
Sbjct: 232 LVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-----AHTPFRESKL 286
Query: 124 TRLLQDS-LGGNSRTVMIACISPADINAEETLNTLKYANRARNI 166
T++L+DS +G NSRT MIA ISP + E TLNTL+YA+R + +
Sbjct: 287 TQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 330
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 95/162 (58%), Gaps = 20/162 (12%)
Query: 4 CLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKL 63
L++ + R+T ST N SSRSH+IF I L S + + + L
Sbjct: 251 ILKKANKLRSTASTASNEHSSRSHSIFIIHL--------------SGSNAKTGAHSYGTL 296
Query: 64 HLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALG--DDKKRKEGVHVPYRDS 121
+LVDLAGSER + G R +E +IN+ L ALG+VI ALG D KR H+P+R+S
Sbjct: 297 NLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKR----HIPFRNS 352
Query: 122 KLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRA 163
KLT LLQ SL G+S+T+M ISP+ + ETLN+L++A++
Sbjct: 353 KLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 394
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 92/156 (58%), Gaps = 20/156 (12%)
Query: 12 RATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGS 71
R+T ST N SSRSH+IF I LE NE E+ L+LVDLAGS
Sbjct: 227 RSTASTAANEHSSRSHSIFIIHLE-------------GKNEGTGEKSQ-GILNLVDLAGS 272
Query: 72 ERAKRTGSDGLRFKEGVHINRGLLALGNVISALG--DDKKRKEGVHVPYRDSKLTRLLQD 129
ER + G R +E IN+ L LG+VI AL D +KR H+P+R+SKLT LLQ
Sbjct: 273 ERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDGQKR----HIPFRNSKLTYLLQY 328
Query: 130 SLGGNSRTVMIACISPADINAEETLNTLKYANRARN 165
SL G+S+T+M ISPA ++ ET+N+L++A++ N
Sbjct: 329 SLIGSSKTLMFVNISPAALHLNETINSLRFASKVNN 364
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 90/154 (58%), Gaps = 20/154 (12%)
Query: 12 RATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGS 71
R+T ST N SSRSH+IF I L S + + + L+LVDLAGS
Sbjct: 214 RSTASTASNEHSSRSHSIFIIHL--------------SGSNAKTGAHSYGTLNLVDLAGS 259
Query: 72 ERAKRTGSDGLRFKEGVHINRGLLALGNVISALG--DDKKRKEGVHVPYRDSKLTRLLQD 129
ER + G R +E +IN+ L LG+VI ALG D KR H+P+R+SKLT LLQ
Sbjct: 260 ERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKR----HIPFRNSKLTYLLQY 315
Query: 130 SLGGNSRTVMIACISPADINAEETLNTLKYANRA 163
SL G+S+T+M ISP+ + ETLN+L++A++
Sbjct: 316 SLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 349
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 90/154 (58%), Gaps = 20/154 (12%)
Query: 12 RATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGS 71
R+T ST N SSRSH+IF I L S + + + L+LVDLAGS
Sbjct: 202 RSTASTASNEHSSRSHSIFIIHL--------------SGSNAKTGAHSYGTLNLVDLAGS 247
Query: 72 ERAKRTGSDGLRFKEGVHINRGLLALGNVISALG--DDKKRKEGVHVPYRDSKLTRLLQD 129
ER + G R +E +IN+ L LG+VI ALG D KR H+P+R+SKLT LLQ
Sbjct: 248 ERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKR----HIPFRNSKLTYLLQY 303
Query: 130 SLGGNSRTVMIACISPADINAEETLNTLKYANRA 163
SL G+S+T+M ISP+ + ETLN+L++A++
Sbjct: 304 SLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 337
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 90/163 (55%), Gaps = 25/163 (15%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLH 64
LE G+ +R TNMN+ SSRSHAI TI ++ S +++
Sbjct: 199 LELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKTHHS--------------------RMN 238
Query: 65 LVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLT 124
+VDLAGSE +RTG +G+ +EGV+IN GLL++ V+ ++ +PYRDS LT
Sbjct: 239 IVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTV-----IPYRDSVLT 293
Query: 125 RLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQ 167
+LQ SL S +ACISP + ETL+TL++ A+ ++
Sbjct: 294 TVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKLR 336
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 88/160 (55%), Gaps = 25/160 (15%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLH 64
LE G+ +R TNMN+ SSRSHAI TI ++ S +++
Sbjct: 199 LELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKTHHS--------------------RMN 238
Query: 65 LVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLT 124
+VDLAGSE +RTG +G+ +EGV+IN GLL++ V+ ++ +PYRDS LT
Sbjct: 239 IVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTV-----IPYRDSVLT 293
Query: 125 RLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRAR 164
+LQ SL S +ACISP + ETL+TL++ A+
Sbjct: 294 TVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAK 333
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 89/154 (57%), Gaps = 20/154 (12%)
Query: 12 RATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGS 71
R+T ST N SSRSH+IF I L S + + + L+LVDLAGS
Sbjct: 203 RSTASTASNEHSSRSHSIFIIHL--------------SGSNAKTGAHSYGTLNLVDLAGS 248
Query: 72 ERAKRTGSDGLRFKEGVHINRGLLALGNVISALG--DDKKRKEGVHVPYRDSKLTRLLQD 129
R + G R +E +IN+ L LG+VI ALG D KR H+P+R+SKLT LLQ
Sbjct: 249 ARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKR----HIPFRNSKLTYLLQY 304
Query: 130 SLGGNSRTVMIACISPADINAEETLNTLKYANRA 163
SL G+S+T+M ISP+ + ETLN+L++A++
Sbjct: 305 SLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 89/154 (57%), Gaps = 20/154 (12%)
Query: 12 RATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGS 71
R+T ST N SSRSH+IF I L S + + + L+LVDLAGS
Sbjct: 203 RSTASTASNEHSSRSHSIFIIHL--------------SGSNAKTGAHSYGTLNLVDLAGS 248
Query: 72 ERAKRTGSDGLRFKEGVHINRGLLALGNVISALG--DDKKRKEGVHVPYRDSKLTRLLQD 129
ER + G R +E +I + L LG+VI ALG D KR H+P+R+SKLT LLQ
Sbjct: 249 ERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKR----HIPFRNSKLTYLLQY 304
Query: 130 SLGGNSRTVMIACISPADINAEETLNTLKYANRA 163
SL G+S+T+M ISP+ + ETLN+L++A++
Sbjct: 305 SLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 89/154 (57%), Gaps = 20/154 (12%)
Query: 12 RATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGS 71
R+T ST N SS SH+IF I L S + + + L+LVDLAGS
Sbjct: 203 RSTASTASNEHSSASHSIFIIHL--------------SGSNAKTGAHSYGTLNLVDLAGS 248
Query: 72 ERAKRTGSDGLRFKEGVHINRGLLALGNVISALG--DDKKRKEGVHVPYRDSKLTRLLQD 129
ER + G R +E +IN+ L LG+VI ALG D KR H+P+R+SKLT LLQ
Sbjct: 249 ERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKR----HIPFRNSKLTYLLQY 304
Query: 130 SLGGNSRTVMIACISPADINAEETLNTLKYANRA 163
SL G+S+T+M ISP+ + ETLN+L++A++
Sbjct: 305 SLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 95/163 (58%), Gaps = 20/163 (12%)
Query: 3 ACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAK 62
L++ S R+T +T N +SSRSH++F + + R L G++S K
Sbjct: 197 TILKKASKMRSTAATRSNERSSRSHSVFMVHING-RNLHT---GETSQ----------GK 242
Query: 63 LHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALG--DDKKRKEGVHVPYRD 120
L+LVDLAGSER + G R +E +IN+ L LG+VI AL D KR ++P+R+
Sbjct: 243 LNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKR----YIPFRN 298
Query: 121 SKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRA 163
SKLT LLQ SL G+S+T+M I P + ETLN+L++A++
Sbjct: 299 SKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKV 341
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 57/83 (68%), Gaps = 4/83 (4%)
Query: 91 NRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINA 150
N+ L ALGNVISAL + K HVPYRDSK+TR+LQDSLGGN RT ++ C SP+ N
Sbjct: 1 NKSLSALGNVISALAEGTK----THVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNE 56
Query: 151 EETLNTLKYANRARNIQNKPIVN 173
ET +TL + RA+ I+N VN
Sbjct: 57 AETKSTLMFGQRAKTIKNTVSVN 79
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 88.2 bits (217), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/85 (54%), Positives = 58/85 (68%), Gaps = 4/85 (4%)
Query: 89 HINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADI 148
+IN+ L ALGNVISAL + K HVPYRDSK+TR+LQDSL GN RT ++ C SP+
Sbjct: 3 NINKSLSALGNVISALAEGTK----THVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVF 58
Query: 149 NAEETLNTLKYANRARNIQNKPIVN 173
N ET +TL + RA+ I+N VN
Sbjct: 59 NEAETKSTLMFGQRAKTIKNTVSVN 83
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 84/157 (53%), Gaps = 25/157 (15%)
Query: 12 RATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLC-AKLHLVDLAG 70
RA T N +SSRSH++F + + E + C A L LVDLAG
Sbjct: 237 RAVARTAQNERSSRSHSVFQLQIS---------------GEHSSRGLQCGAPLSLVDLAG 281
Query: 71 SERAKRTGSDGL----RFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRL 126
SER + G R +E IN L LG VI AL + + HVPYR+SKLT L
Sbjct: 282 SERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKES-----HVPYRNSKLTYL 336
Query: 127 LQDSLGGNSRTVMIACISPADINAEETLNTLKYANRA 163
LQ+SLGG+++ +M ISP + N E+LN+L++A++
Sbjct: 337 LQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKV 373
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 84/156 (53%), Gaps = 23/156 (14%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLH 64
+ ++RAT ST N +SSRSHA+ + L +G + +E ++
Sbjct: 252 MHTAKMNRATASTAGNERSSRSHAVTKLEL----------IG----RHAEKQEISVGSIN 297
Query: 65 LVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLT 124
LVDLAGSE K + R E +INR L L NVI AL + H+PYR+SKLT
Sbjct: 298 LVDLAGSESPKTST----RMTETKNINRSLSELTNVILALLQKQD-----HIPYRNSKLT 348
Query: 125 RLLQDSLGGNSRTVMIACISPADINAEETLNTLKYA 160
LL SLGGNS+T+M +SP +E++ +L++A
Sbjct: 349 HLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 384
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 84/156 (53%), Gaps = 23/156 (14%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLH 64
+ ++RAT ST N +SSRSHA+ + L +G + +E ++
Sbjct: 244 MHTAKMNRATASTAGNERSSRSHAVTKLEL----------IG----RHAEKQEISVGSIN 289
Query: 65 LVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLT 124
LVDLAGSE K + R E +INR L L NVI AL + H+PYR+SKLT
Sbjct: 290 LVDLAGSESPKTST----RMTETKNINRSLSELTNVILALLQKQD-----HIPYRNSKLT 340
Query: 125 RLLQDSLGGNSRTVMIACISPADINAEETLNTLKYA 160
LL SLGGNS+T+M +SP +E++ +L++A
Sbjct: 341 HLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 376
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 84/156 (53%), Gaps = 23/156 (14%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLH 64
+ ++RAT ST N +SSRSHA+ + L +G + +E ++
Sbjct: 238 MHTAKMNRATASTAGNERSSRSHAVTKLEL----------IG----RHAEKQEISVGSIN 283
Query: 65 LVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLT 124
LVDLAGSE K + R E +INR L L NVI AL + H+PYR+SKLT
Sbjct: 284 LVDLAGSESPKTST----RMTETKNINRSLSELTNVILALLQKQD-----HIPYRNSKLT 334
Query: 125 RLLQDSLGGNSRTVMIACISPADINAEETLNTLKYA 160
LL SLGGNS+T+M +SP +E++ +L++A
Sbjct: 335 HLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 370
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 84/156 (53%), Gaps = 23/156 (14%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLH 64
+ ++RAT ST N +SSRSHA+ + L +G + +E ++
Sbjct: 241 MHTAKMNRATASTAGNERSSRSHAVTKLEL----------IG----RHAEKQEISVGSIN 286
Query: 65 LVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLT 124
LVDLAGSE K + R E +INR L L NVI AL + H+PYR+SKLT
Sbjct: 287 LVDLAGSESPKTST----RMTETKNINRSLSELTNVILALLQKQD-----HIPYRNSKLT 337
Query: 125 RLLQDSLGGNSRTVMIACISPADINAEETLNTLKYA 160
LL SLGGNS+T+M +SP +E++ +L++A
Sbjct: 338 HLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 373
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 83/156 (53%), Gaps = 23/156 (14%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLH 64
+ ++RAT ST N +SSRSHA+ + L +G + +E ++
Sbjct: 241 MHTAKMNRATASTAGNERSSRSHAVTKLEL----------IG----RHAEKQEISVGSIN 286
Query: 65 LVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLT 124
LVDLAGSE K + R E +I R L L NVI AL + H+PYR+SKLT
Sbjct: 287 LVDLAGSESPKTST----RMTETKNIKRSLSELTNVILALLQKQD-----HIPYRNSKLT 337
Query: 125 RLLQDSLGGNSRTVMIACISPADINAEETLNTLKYA 160
LL SLGGNS+T+M +SP +E++ +L++A
Sbjct: 338 HLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 373
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 14/69 (20%)
Query: 5 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLH 64
+++G +R TNMN SSRSH+IF I ++Q E+ L KL+
Sbjct: 183 IDEGKANRHVAVTNMNEHSSRSHSIFLINIKQ--------------ENVETEKKLSGKLY 228
Query: 65 LVDLAGSER 73
LVDLAGSE+
Sbjct: 229 LVDLAGSEK 237
>pdb|3LMM|A Chain A, Crystal Structure Of The Dip2311 Protein From
Corynebacterium Diphtheriae, Northeast Structural
Genomics Consortium Target Cdr35
pdb|3LMM|B Chain B, Crystal Structure Of The Dip2311 Protein From
Corynebacterium Diphtheriae, Northeast Structural
Genomics Consortium Target Cdr35
pdb|3LMM|C Chain C, Crystal Structure Of The Dip2311 Protein From
Corynebacterium Diphtheriae, Northeast Structural
Genomics Consortium Target Cdr35
pdb|3LMM|D Chain D, Crystal Structure Of The Dip2311 Protein From
Corynebacterium Diphtheriae, Northeast Structural
Genomics Consortium Target Cdr35
Length = 583
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 13/71 (18%)
Query: 350 RDHLLTEIEN-LASNSDGQTQKLQDVHAHKLKSLEAQILDLKKK--QENQVQLLKQKQKS 406
R+ L+ ++E+ LAS +DG+ QK + E Q +D K++ + N Q+ K ++
Sbjct: 12 REQLIAQVESILASAADGRVQKTK----------ETQSVDFKEEAGRRNGPQIEPGKPEN 61
Query: 407 DEAAKRLQDEI 417
EAA +L DE+
Sbjct: 62 PEAADKLADEV 72
>pdb|2ZUS|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase
pdb|2ZUS|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase
pdb|2ZUS|C Chain C, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase
pdb|2ZUS|D Chain D, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase
pdb|2ZUT|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Galnac
pdb|2ZUT|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Galnac
pdb|2ZUT|C Chain C, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Galnac
pdb|2ZUT|D Chain D, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Galnac
pdb|2ZUU|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac
pdb|2ZUU|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac
pdb|2ZUU|C Chain C, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac
pdb|2ZUU|D Chain D, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac
pdb|2ZUV|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac, Ethylene Glycol,
And Nitrate
pdb|2ZUV|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac, Ethylene Glycol,
And Nitrate
pdb|2ZUW|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac And Sulfate
pdb|2ZUW|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac And Sulfate
pdb|2ZUW|C Chain C, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac And Sulfate
pdb|2ZUW|D Chain D, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac And Sulfate
Length = 759
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 72 ERAKRTGSDGLRFKEGVHINRGLLALG-NVISALGDDKKRKEGVHVPYRDSKLTRLLQDS 130
E A+ G+D +R +G H++ +LALG + +A + E + + ++ LL D
Sbjct: 21 ELAELWGADAIRNSDGTHLDEAVLALGKKIYNAYFPTRAHNEWITLHMDETPQVYLLTDR 80
Query: 131 LGGNSRTVMIACI 143
+ S TV I +
Sbjct: 81 ILAESDTVDIPLM 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.127 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,727,152
Number of Sequences: 62578
Number of extensions: 809010
Number of successful extensions: 2302
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 2084
Number of HSP's gapped (non-prelim): 131
length of query: 833
length of database: 14,973,337
effective HSP length: 107
effective length of query: 726
effective length of database: 8,277,491
effective search space: 6009458466
effective search space used: 6009458466
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)