Query 003293
Match_columns 833
No_of_seqs 385 out of 1821
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 20:45:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003293.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003293hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0244 Kinesin-like protein [ 100.0 3.7E-92 7.9E-97 816.8 41.6 655 1-711 168-854 (913)
2 KOG0243 Kinesin-like protein [ 100.0 7.3E-44 1.6E-48 420.6 63.0 181 2-198 242-423 (1041)
3 KOG0245 Kinesin-like protein [ 100.0 1.3E-48 2.8E-53 452.0 17.8 214 2-225 192-418 (1221)
4 KOG4280 Kinesin-like protein [ 100.0 1.6E-48 3.5E-53 443.6 14.1 183 1-198 186-368 (574)
5 KOG0240 Kinesin (SMY1 subfamil 100.0 9.5E-42 2E-46 378.6 26.5 161 1-179 184-344 (607)
6 PLN03188 kinesin-12 family pro 100.0 2.4E-42 5.2E-47 411.1 15.6 185 1-195 279-469 (1320)
7 KOG0241 Kinesin-like protein [ 100.0 1.1E-40 2.5E-45 379.0 19.3 187 2-198 196-383 (1714)
8 KOG0242 Kinesin-like protein [ 100.0 1.7E-40 3.7E-45 391.4 15.6 180 1-198 184-364 (675)
9 cd01373 KISc_KLP2_like Kinesin 100.0 7.7E-39 1.7E-43 354.0 13.0 153 1-166 185-337 (337)
10 cd01370 KISc_KIP3_like Kinesin 100.0 4.1E-38 8.8E-43 348.4 13.6 153 1-166 186-338 (338)
11 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1.5E-37 3.2E-42 346.0 13.7 158 2-175 195-352 (352)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 2.2E-37 4.7E-42 345.1 14.3 162 2-173 192-356 (356)
13 cd01368 KISc_KIF23_like Kinesi 100.0 2E-37 4.3E-42 343.7 12.7 157 2-164 188-345 (345)
14 KOG0247 Kinesin-like protein [ 100.0 1.1E-35 2.3E-40 337.5 20.5 163 2-176 284-446 (809)
15 cd01372 KISc_KIF4 Kinesin moto 100.0 9.6E-36 2.1E-40 330.1 14.0 160 2-167 182-341 (341)
16 cd01371 KISc_KIF3 Kinesin moto 100.0 1.8E-35 4E-40 326.8 13.4 150 2-166 184-333 (333)
17 cd01376 KISc_KID_like Kinesin 100.0 2.4E-35 5.1E-40 324.1 12.3 142 2-164 178-319 (319)
18 cd01369 KISc_KHC_KIF5 Kinesin 100.0 4.3E-35 9.4E-40 322.8 12.9 147 2-166 179-325 (325)
19 cd01367 KISc_KIF2_like Kinesin 100.0 3.5E-35 7.7E-40 323.0 12.1 141 2-164 181-322 (322)
20 cd01375 KISc_KIF9_like Kinesin 100.0 4.6E-35 1E-39 323.7 12.5 147 2-164 188-334 (334)
21 cd01374 KISc_CENP_E Kinesin mo 100.0 1E-34 2.3E-39 319.3 13.3 150 2-166 172-321 (321)
22 KOG0246 Kinesin-like protein [ 100.0 6.5E-35 1.4E-39 323.0 10.7 149 1-171 396-546 (676)
23 KOG0239 Kinesin (KAR3 subfamil 100.0 6.4E-35 1.4E-39 343.0 9.2 153 1-172 494-646 (670)
24 cd01366 KISc_C_terminal Kinesi 100.0 3.3E-34 7.1E-39 316.4 13.0 149 2-169 181-329 (329)
25 smart00129 KISc Kinesin motor, 100.0 7.5E-34 1.6E-38 314.2 12.8 157 2-173 179-335 (335)
26 PF00225 Kinesin: Kinesin moto 100.0 1.5E-33 3.3E-38 311.7 10.8 152 2-166 183-335 (335)
27 cd01363 Motor_domain Myosin an 100.0 1.9E-32 4.1E-37 278.8 10.0 128 2-145 59-186 (186)
28 COG5059 KIP1 Kinesin-like prot 100.0 7.8E-32 1.7E-36 315.2 14.7 157 1-174 188-344 (568)
29 cd00106 KISc Kinesin motor dom 100.0 1.8E-31 4E-36 294.2 12.9 148 2-164 181-328 (328)
30 KOG0612 Rho-associated, coiled 98.6 0.0041 8.9E-08 76.9 47.1 105 600-709 709-816 (1317)
31 KOG0161 Myosin class II heavy 98.2 0.088 1.9E-06 69.8 57.7 30 535-564 1189-1218(1930)
32 PF07888 CALCOCO1: Calcium bin 98.2 0.035 7.6E-07 65.0 48.6 52 654-705 406-457 (546)
33 KOG0161 Myosin class II heavy 98.0 0.2 4.4E-06 66.5 57.3 88 299-398 1158-1259(1930)
34 TIGR00606 rad50 rad50. This fa 97.9 0.25 5.5E-06 65.0 53.3 76 297-390 795-870 (1311)
35 PRK02224 chromosome segregatio 97.7 0.32 6.9E-06 61.3 55.2 40 647-686 649-688 (880)
36 PF00038 Filament: Intermediat 97.7 0.099 2.1E-06 57.7 32.5 229 324-612 44-280 (312)
37 KOG0977 Nuclear envelope prote 97.5 0.42 9E-06 56.3 36.3 43 658-700 342-384 (546)
38 PRK03918 chromosome segregatio 97.5 0.65 1.4E-05 58.5 56.6 30 330-359 303-332 (880)
39 KOG4643 Uncharacterized coiled 97.4 0.68 1.5E-05 57.1 46.6 300 330-708 260-568 (1195)
40 PRK02224 chromosome segregatio 97.4 0.8 1.7E-05 57.8 57.1 46 660-705 594-639 (880)
41 PF09726 Macoilin: Transmembra 97.3 0.13 2.8E-06 62.8 29.2 45 607-666 593-637 (697)
42 PF08826 DMPK_coil: DMPK coile 97.3 0.0017 3.7E-08 54.3 9.3 57 648-704 1-57 (61)
43 KOG0995 Centromere-associated 97.3 0.63 1.4E-05 54.5 36.0 147 523-675 423-570 (581)
44 TIGR02169 SMC_prok_A chromosom 97.2 1.3 2.8E-05 57.3 46.5 12 118-129 55-66 (1164)
45 COG1196 Smc Chromosome segrega 97.2 1.4 3E-05 57.5 51.5 16 776-791 637-652 (1163)
46 PRK11637 AmiB activator; Provi 97.1 0.61 1.3E-05 54.0 30.0 33 774-813 394-427 (428)
47 TIGR02168 SMC_prok_B chromosom 97.0 2.2 4.8E-05 55.1 46.3 35 665-699 993-1027(1179)
48 KOG0964 Structural maintenance 97.0 1.7 3.7E-05 53.6 39.7 229 297-564 187-426 (1200)
49 TIGR02168 SMC_prok_B chromosom 96.8 3.1 6.7E-05 53.7 43.0 11 118-128 55-65 (1179)
50 TIGR02169 SMC_prok_A chromosom 96.7 3.4 7.5E-05 53.4 50.0 14 673-686 1001-1014(1164)
51 KOG4674 Uncharacterized conser 96.7 4.2 9.1E-05 54.0 49.7 90 592-692 803-892 (1822)
52 TIGR00606 rad50 rad50. This fa 96.6 4.3 9.4E-05 53.7 52.6 30 594-623 970-999 (1311)
53 PF09755 DUF2046: Uncharacteri 96.6 1.5 3.4E-05 48.1 29.3 92 406-497 104-203 (310)
54 PF10174 Cast: RIM-binding pro 96.6 3.3 7.1E-05 51.3 48.4 219 410-709 289-509 (775)
55 COG1196 Smc Chromosome segrega 96.4 5.8 0.00012 51.9 46.9 51 646-696 448-498 (1163)
56 PF12128 DUF3584: Protein of u 96.3 6.5 0.00014 51.6 54.6 90 299-389 318-407 (1201)
57 KOG0977 Nuclear envelope prote 96.3 3.7 8E-05 48.6 31.1 107 300-442 41-147 (546)
58 PF00038 Filament: Intermediat 96.2 2.7 6E-05 46.3 42.2 53 331-390 15-67 (312)
59 PF09726 Macoilin: Transmembra 96.1 3 6.4E-05 51.3 28.1 55 647-708 604-658 (697)
60 KOG0250 DNA repair protein RAD 96.1 6.2 0.00013 49.8 40.2 63 646-708 663-725 (1074)
61 KOG2129 Uncharacterized conser 96.1 1.7 3.7E-05 48.9 23.1 81 373-453 204-298 (552)
62 PF10174 Cast: RIM-binding pro 95.8 7.6 0.00017 48.2 48.4 93 370-472 433-525 (775)
63 COG4942 Membrane-bound metallo 95.4 6.6 0.00014 45.1 25.7 34 413-446 148-181 (420)
64 COG1579 Zn-ribbon protein, pos 95.4 4.5 9.9E-05 43.2 23.2 125 298-457 35-159 (239)
65 PF09755 DUF2046: Uncharacteri 95.2 6.5 0.00014 43.4 32.2 41 523-563 256-296 (310)
66 KOG4673 Transcription factor T 95.2 10 0.00022 45.6 46.0 137 325-479 400-541 (961)
67 PRK03918 chromosome segregatio 95.2 13 0.00029 46.9 57.1 43 659-701 667-709 (880)
68 KOG0976 Rho/Rac1-interacting s 95.0 12 0.00026 45.6 39.8 30 592-621 328-357 (1265)
69 COG1579 Zn-ribbon protein, pos 94.9 4.2 9.1E-05 43.4 20.6 89 373-466 55-143 (239)
70 KOG0996 Structural maintenance 94.7 18 0.00039 46.1 39.1 43 522-564 487-529 (1293)
71 PF05667 DUF812: Protein of un 94.5 15 0.00033 44.4 34.6 41 524-564 487-527 (594)
72 COG3883 Uncharacterized protei 94.4 9.2 0.0002 41.4 22.2 60 408-467 158-217 (265)
73 PF12128 DUF3584: Protein of u 94.3 25 0.00054 46.3 54.0 145 524-692 721-868 (1201)
74 KOG1029 Endocytic adaptor prot 94.3 17 0.00037 44.3 32.2 24 658-681 563-586 (1118)
75 KOG4674 Uncharacterized conser 94.2 29 0.00063 46.6 55.0 162 334-495 689-860 (1822)
76 PF00261 Tropomyosin: Tropomyo 94.1 9.2 0.0002 40.8 21.5 97 331-431 131-227 (237)
77 PF12718 Tropomyosin_1: Tropom 94.1 6.6 0.00014 38.7 19.8 123 296-438 16-138 (143)
78 KOG4643 Uncharacterized coiled 94.0 23 0.0005 44.5 49.3 100 330-429 318-436 (1195)
79 KOG1029 Endocytic adaptor prot 93.7 22 0.00048 43.4 33.2 48 448-495 473-520 (1118)
80 PF12325 TMF_TATA_bd: TATA ele 93.7 1.7 3.6E-05 41.6 13.2 90 334-431 30-119 (120)
81 KOG0971 Microtubule-associated 93.4 27 0.00058 43.5 36.8 197 477-706 337-538 (1243)
82 KOG0996 Structural maintenance 93.3 32 0.00069 44.1 41.2 77 635-711 519-595 (1293)
83 PHA02562 46 endonuclease subun 93.3 23 0.00049 42.3 28.9 25 405-429 178-202 (562)
84 PF05701 WEMBL: Weak chloropla 93.0 25 0.00054 42.0 52.3 73 638-710 366-438 (522)
85 KOG0933 Structural maintenance 92.8 34 0.00074 43.1 40.3 41 525-565 896-936 (1174)
86 PRK09039 hypothetical protein; 92.7 16 0.00034 41.3 21.3 117 299-438 51-167 (343)
87 PF07888 CALCOCO1: Calcium bin 92.6 27 0.0006 41.6 48.8 8 24-31 3-10 (546)
88 PF01576 Myosin_tail_1: Myosin 92.3 0.04 8.7E-07 69.0 0.0 42 657-698 460-501 (859)
89 COG5185 HEC1 Protein involved 92.1 27 0.00059 40.4 30.6 37 647-683 583-619 (622)
90 PHA02562 46 endonuclease subun 92.0 33 0.00071 41.0 31.9 91 331-423 252-352 (562)
91 KOG0933 Structural maintenance 91.9 44 0.00096 42.2 40.3 126 334-462 677-802 (1174)
92 KOG0976 Rho/Rac1-interacting s 91.8 39 0.00086 41.5 48.6 33 398-430 281-313 (1265)
93 COG5059 KIP1 Kinesin-like prot 91.8 0.04 8.7E-07 65.9 -0.8 79 9-105 488-566 (568)
94 PF09787 Golgin_A5: Golgin sub 91.3 38 0.00082 40.4 33.2 202 330-564 210-428 (511)
95 PRK10929 putative mechanosensi 90.6 66 0.0014 41.9 32.1 42 523-564 260-301 (1109)
96 KOG0250 DNA repair protein RAD 90.5 62 0.0013 41.3 36.6 54 407-460 280-336 (1074)
97 PF05667 DUF812: Protein of un 90.1 52 0.0011 40.0 34.3 141 297-443 331-475 (594)
98 COG4942 Membrane-bound metallo 90.0 42 0.00091 38.8 26.9 71 301-391 38-108 (420)
99 PRK04863 mukB cell division pr 89.6 92 0.002 42.0 43.9 25 591-615 562-586 (1486)
100 PF04849 HAP1_N: HAP1 N-termin 89.5 38 0.00083 37.5 21.5 28 206-233 161-188 (306)
101 PF01576 Myosin_tail_1: Myosin 89.5 0.1 2.3E-06 65.4 0.0 30 535-564 616-645 (859)
102 TIGR03007 pepcterm_ChnLen poly 88.3 60 0.0013 38.2 22.2 98 298-395 165-272 (498)
103 PF15254 CCDC14: Coiled-coil d 88.3 41 0.00088 41.4 19.9 142 297-470 397-545 (861)
104 PF08317 Spc7: Spc7 kinetochor 88.2 37 0.00081 38.0 19.0 70 375-454 214-283 (325)
105 PRK04778 septation ring format 88.1 69 0.0015 38.7 39.0 104 594-704 404-508 (569)
106 PF15070 GOLGA2L5: Putative go 88.0 73 0.0016 38.9 43.0 388 210-721 2-409 (617)
107 KOG0946 ER-Golgi vesicle-tethe 87.7 81 0.0018 39.1 23.1 18 373-390 851-868 (970)
108 PF12718 Tropomyosin_1: Tropom 87.6 31 0.00067 34.1 20.2 68 378-445 43-110 (143)
109 KOG0612 Rho-associated, coiled 87.3 1.1E+02 0.0023 39.9 40.5 29 332-360 499-527 (1317)
110 PF12325 TMF_TATA_bd: TATA ele 86.9 21 0.00046 34.2 13.8 51 172-234 9-59 (120)
111 PF10481 CENP-F_N: Cenp-F N-te 86.8 51 0.0011 35.8 18.0 29 536-564 163-191 (307)
112 PRK04863 mukB cell division pr 86.6 1.4E+02 0.0029 40.5 42.5 16 608-623 513-528 (1486)
113 PRK11281 hypothetical protein; 86.4 1.2E+02 0.0026 39.7 34.3 42 523-564 280-321 (1113)
114 PF14662 CCDC155: Coiled-coil 85.1 50 0.0011 34.2 22.5 34 328-361 96-129 (193)
115 KOG0994 Extracellular matrix g 84.6 1.4E+02 0.0029 38.7 43.9 83 153-246 1177-1259(1758)
116 PF04111 APG6: Autophagy prote 84.3 21 0.00046 39.8 14.4 27 334-360 43-69 (314)
117 KOG1853 LIS1-interacting prote 83.9 66 0.0014 34.5 21.4 64 405-468 56-119 (333)
118 KOG0804 Cytoplasmic Zn-finger 83.9 41 0.0009 38.8 16.2 50 117-173 59-109 (493)
119 TIGR01005 eps_transp_fam exopo 82.8 84 0.0018 39.2 20.4 60 299-358 199-261 (754)
120 PF08232 Striatin: Striatin fa 82.8 19 0.0004 35.2 11.6 116 645-763 5-123 (134)
121 KOG0946 ER-Golgi vesicle-tethe 82.3 1.4E+02 0.0031 37.2 28.1 65 380-444 709-773 (970)
122 PF05557 MAD: Mitotic checkpoi 82.1 0.43 9.3E-06 59.0 0.0 18 547-564 262-279 (722)
123 COG1340 Uncharacterized archae 80.1 1E+02 0.0022 34.1 35.4 18 337-354 30-47 (294)
124 PF04111 APG6: Autophagy prote 80.1 32 0.00069 38.4 13.8 22 337-358 12-33 (314)
125 PF05557 MAD: Mitotic checkpoi 80.0 23 0.00051 44.0 14.1 28 332-359 508-535 (722)
126 KOG0995 Centromere-associated 80.0 1.4E+02 0.0031 35.7 35.4 28 441-468 288-315 (581)
127 PF14988 DUF4515: Domain of un 79.7 85 0.0018 33.0 24.9 79 327-410 40-123 (206)
128 COG2433 Uncharacterized conser 79.6 33 0.00071 41.1 14.0 23 332-354 420-442 (652)
129 KOG4809 Rab6 GTPase-interactin 79.1 1.5E+02 0.0032 35.4 28.2 36 325-360 419-454 (654)
130 PF08614 ATG16: Autophagy prot 78.7 35 0.00076 35.2 12.8 86 334-423 74-159 (194)
131 PF05622 HOOK: HOOK protein; 78.6 0.65 1.4E-05 57.3 0.0 25 330-354 263-287 (713)
132 KOG0994 Extracellular matrix g 78.3 2.2E+02 0.0048 37.0 34.2 40 457-496 1657-1696(1758)
133 PF15619 Lebercilin: Ciliary p 78.0 92 0.002 32.4 23.3 37 404-440 121-157 (194)
134 PF04849 HAP1_N: HAP1 N-termin 77.9 1.2E+02 0.0026 33.7 29.3 34 208-241 86-119 (306)
135 PF08581 Tup_N: Tup N-terminal 77.0 46 0.001 29.6 11.1 48 372-419 27-75 (79)
136 PF09728 Taxilin: Myosin-like 76.3 1.3E+02 0.0029 33.4 36.5 67 416-486 203-272 (309)
137 PRK09039 hypothetical protein; 76.2 1.4E+02 0.0031 33.7 22.6 52 295-351 40-91 (343)
138 PF11559 ADIP: Afadin- and alp 75.8 85 0.0018 30.9 15.7 29 330-358 48-76 (151)
139 PF10146 zf-C4H2: Zinc finger- 75.6 1E+02 0.0023 32.9 15.4 52 335-398 2-53 (230)
140 smart00787 Spc7 Spc7 kinetocho 75.2 1.4E+02 0.0031 33.3 18.5 49 407-455 231-279 (312)
141 KOG0980 Actin-binding protein 75.0 2.4E+02 0.0051 35.6 31.2 87 412-499 390-479 (980)
142 PF08317 Spc7: Spc7 kinetochor 74.8 1.5E+02 0.0032 33.2 20.7 51 337-395 152-202 (325)
143 KOG1899 LAR transmembrane tyro 74.5 1.6E+02 0.0034 35.7 17.4 99 383-488 180-290 (861)
144 KOG1853 LIS1-interacting prote 74.4 1.3E+02 0.0028 32.4 19.6 21 426-446 164-184 (333)
145 PF10146 zf-C4H2: Zinc finger- 73.6 1.3E+02 0.0029 32.1 15.9 42 334-390 32-73 (230)
146 KOG0963 Transcription factor/C 73.4 2.2E+02 0.0047 34.5 46.7 147 591-754 314-478 (629)
147 PF15066 CAGE1: Cancer-associa 73.3 1.9E+02 0.0042 33.8 28.8 49 414-462 459-507 (527)
148 KOG4807 F-actin binding protei 73.2 1.7E+02 0.0038 33.3 29.9 32 325-356 343-378 (593)
149 PRK01156 chromosome segregatio 73.0 2.7E+02 0.0059 35.5 58.3 16 376-391 415-430 (895)
150 PF07926 TPR_MLP1_2: TPR/MLP1/ 72.7 95 0.0021 30.0 17.0 20 413-432 71-90 (132)
151 PF09730 BicD: Microtubule-ass 72.4 2.6E+02 0.0056 34.9 37.6 60 296-360 29-88 (717)
152 PF08172 CASP_C: CASP C termin 71.9 63 0.0014 34.9 12.9 47 368-431 84-130 (248)
153 PRK13729 conjugal transfer pil 71.0 34 0.00074 40.0 11.2 61 648-709 60-120 (475)
154 PF05622 HOOK: HOOK protein; 70.5 1.4 3E-05 54.5 0.0 24 332-355 396-419 (713)
155 PF10473 CENP-F_leu_zip: Leuci 70.5 1.2E+02 0.0025 30.1 18.6 21 334-354 24-44 (140)
156 KOG0804 Cytoplasmic Zn-finger 70.0 1.4E+02 0.003 34.8 15.3 33 427-459 415-447 (493)
157 COG2433 Uncharacterized conser 69.5 83 0.0018 37.9 13.9 58 334-396 436-493 (652)
158 PF11932 DUF3450: Protein of u 68.2 1.8E+02 0.0038 31.3 15.8 80 332-440 40-119 (251)
159 PF14988 DUF4515: Domain of un 67.6 1.7E+02 0.0036 30.8 27.3 72 375-449 52-123 (206)
160 TIGR03017 EpsF chain length de 67.3 2.4E+02 0.0052 32.6 22.2 97 299-395 176-279 (444)
161 TIGR03185 DNA_S_dndD DNA sulfu 65.5 3.3E+02 0.0072 33.5 33.9 47 416-462 238-284 (650)
162 PRK04778 septation ring format 65.2 3.2E+02 0.0068 33.1 41.8 155 375-563 170-338 (569)
163 PF00769 ERM: Ezrin/radixin/mo 64.6 2.1E+02 0.0045 30.9 16.3 15 448-462 90-104 (246)
164 COG3074 Uncharacterized protei 63.3 75 0.0016 27.5 8.8 44 660-703 20-63 (79)
165 PF02841 GBP_C: Guanylate-bind 63.2 1E+02 0.0022 33.9 12.8 12 115-126 25-36 (297)
166 KOG0288 WD40 repeat protein Ti 63.0 1.8E+02 0.0038 33.6 14.3 28 760-791 390-418 (459)
167 KOG1265 Phospholipase C [Lipid 63.0 2.9E+02 0.0064 35.0 17.0 21 478-498 1127-1147(1189)
168 PF05010 TACC: Transforming ac 62.5 2.1E+02 0.0045 30.2 24.5 123 332-468 60-182 (207)
169 COG4372 Uncharacterized protei 62.1 2.9E+02 0.0063 31.7 33.4 83 92-196 7-91 (499)
170 PF08614 ATG16: Autophagy prot 62.1 79 0.0017 32.6 11.0 105 592-704 72-176 (194)
171 PF13870 DUF4201: Domain of un 61.4 1.9E+02 0.0041 29.3 16.5 118 291-433 10-130 (177)
172 PRK10884 SH3 domain-containing 60.6 1.4E+02 0.0029 31.5 12.4 24 334-357 125-148 (206)
173 PRK15422 septal ring assembly 60.2 66 0.0014 28.6 8.2 42 660-701 20-61 (79)
174 KOG0979 Structural maintenance 60.2 4.8E+02 0.01 33.6 31.7 46 654-699 755-800 (1072)
175 PF05700 BCAS2: Breast carcino 60.1 2.1E+02 0.0046 30.2 14.0 81 336-430 138-218 (221)
176 PF04156 IncA: IncA protein; 59.4 2.1E+02 0.0045 29.1 15.8 16 375-390 128-143 (191)
177 PF10168 Nup88: Nuclear pore c 58.5 1.9E+02 0.0041 36.2 15.0 21 474-494 691-711 (717)
178 PF10481 CENP-F_N: Cenp-F N-te 56.5 2.7E+02 0.0059 30.4 13.7 28 334-361 18-45 (307)
179 PF14662 CCDC155: Coiled-coil 56.4 2.5E+02 0.0055 29.2 25.3 47 385-431 44-90 (193)
180 PF10473 CENP-F_leu_zip: Leuci 56.2 2.1E+02 0.0046 28.3 19.3 62 333-402 51-112 (140)
181 PF15619 Lebercilin: Ciliary p 56.0 2.6E+02 0.0056 29.1 23.5 51 445-495 123-180 (194)
182 PF07106 TBPIP: Tat binding pr 56.0 1.1E+02 0.0025 30.6 10.7 25 336-360 81-105 (169)
183 KOG2991 Splicing regulator [RN 55.3 2.5E+02 0.0055 30.4 13.1 114 114-229 93-234 (330)
184 PRK00409 recombination and DNA 54.6 1.7E+02 0.0037 36.9 14.0 27 132-160 324-350 (782)
185 PF07926 TPR_MLP1_2: TPR/MLP1/ 53.7 2.2E+02 0.0047 27.6 17.8 38 524-561 94-131 (132)
186 TIGR01005 eps_transp_fam exopo 52.9 5.5E+02 0.012 32.1 23.3 50 377-433 352-401 (754)
187 TIGR03007 pepcterm_ChnLen poly 52.6 4.5E+02 0.0097 30.9 26.6 107 132-238 118-230 (498)
188 TIGR01069 mutS2 MutS2 family p 52.4 3E+02 0.0064 34.8 15.6 17 417-433 574-590 (771)
189 COG1382 GimC Prefoldin, chaper 51.8 2.3E+02 0.005 27.3 11.4 51 662-712 67-117 (119)
190 PF10186 Atg14: UV radiation r 51.8 3.4E+02 0.0073 29.2 19.4 25 336-360 22-46 (302)
191 PF14282 FlxA: FlxA-like prote 51.7 98 0.0021 28.9 8.7 55 333-391 18-72 (106)
192 COG1382 GimC Prefoldin, chaper 51.7 2.3E+02 0.005 27.3 12.1 40 371-420 71-110 (119)
193 smart00787 Spc7 Spc7 kinetocho 51.4 3.9E+02 0.0085 29.9 17.4 84 299-391 177-260 (312)
194 KOG0963 Transcription factor/C 51.1 5.4E+02 0.012 31.4 36.6 20 335-354 60-79 (629)
195 PF13851 GAS: Growth-arrest sp 50.6 3.2E+02 0.0069 28.6 23.9 138 297-464 30-167 (201)
196 PRK10884 SH3 domain-containing 50.5 2E+02 0.0044 30.2 11.7 20 376-395 92-111 (206)
197 PF00769 ERM: Ezrin/radixin/mo 50.1 3.6E+02 0.0078 29.1 16.6 46 303-353 7-52 (246)
198 PF03962 Mnd1: Mnd1 family; I 50.0 3.1E+02 0.0067 28.3 13.0 61 331-393 66-126 (188)
199 KOG4001 Axonemal dynein light 50.0 3.2E+02 0.0069 28.7 12.4 51 379-431 201-251 (259)
200 TIGR02338 gimC_beta prefoldin, 49.9 2.2E+02 0.0047 26.6 10.8 37 667-703 69-105 (110)
201 KOG0163 Myosin class VI heavy 49.7 6.2E+02 0.013 31.7 21.4 37 119-155 388-425 (1259)
202 PRK00409 recombination and DNA 49.0 3.8E+02 0.0082 33.9 15.8 20 414-433 576-595 (782)
203 KOG4360 Uncharacterized coiled 48.9 5.3E+02 0.012 30.7 17.4 18 378-395 269-286 (596)
204 KOG0964 Structural maintenance 48.8 7.1E+02 0.015 32.1 37.3 43 523-565 330-372 (1200)
205 TIGR03185 DNA_S_dndD DNA sulfu 48.1 6.1E+02 0.013 31.2 33.7 56 334-393 230-285 (650)
206 KOG1899 LAR transmembrane tyro 47.5 6.1E+02 0.013 31.0 20.7 36 406-441 172-207 (861)
207 PF10168 Nup88: Nuclear pore c 47.3 6.7E+02 0.015 31.4 22.0 6 63-68 173-178 (717)
208 PF06160 EzrA: Septation ring 46.4 6.1E+02 0.013 30.7 43.0 150 376-563 167-334 (560)
209 PRK09343 prefoldin subunit bet 46.1 2.7E+02 0.006 26.6 11.4 52 661-712 67-118 (121)
210 PF09789 DUF2353: Uncharacteri 45.7 4.9E+02 0.011 29.3 30.1 99 396-498 128-229 (319)
211 KOG4005 Transcription factor X 45.0 1.9E+02 0.004 31.0 10.1 64 331-395 87-150 (292)
212 PF08826 DMPK_coil: DMPK coile 44.5 98 0.0021 26.2 6.6 23 369-392 32-54 (61)
213 TIGR02338 gimC_beta prefoldin, 44.4 2.7E+02 0.0058 26.0 12.1 29 331-359 14-42 (110)
214 PF00261 Tropomyosin: Tropomyo 44.2 4.2E+02 0.0091 28.2 31.0 25 538-562 193-217 (237)
215 PF13779 DUF4175: Domain of un 43.3 6.7E+02 0.015 31.9 16.6 44 638-682 555-598 (820)
216 KOG3433 Protein involved in me 43.3 3.6E+02 0.0079 27.8 11.5 65 374-442 78-146 (203)
217 KOG4807 F-actin binding protei 43.2 5.7E+02 0.012 29.4 21.7 72 369-440 413-488 (593)
218 PF05266 DUF724: Protein of un 43.1 4E+02 0.0087 27.6 14.0 58 403-471 126-183 (190)
219 PF04012 PspA_IM30: PspA/IM30 43.1 4.1E+02 0.0088 27.7 16.8 17 375-391 56-72 (221)
220 PRK01156 chromosome segregatio 42.7 8.3E+02 0.018 31.2 59.3 40 660-699 683-722 (895)
221 PF10226 DUF2216: Uncharacteri 42.5 3.1E+02 0.0068 28.4 11.1 84 207-355 50-136 (195)
222 KOG0018 Structural maintenance 41.5 9.3E+02 0.02 31.4 39.0 41 128-168 89-129 (1141)
223 PF15294 Leu_zip: Leucine zipp 41.1 5.3E+02 0.012 28.4 15.3 50 375-430 188-237 (278)
224 KOG4657 Uncharacterized conser 40.8 4.8E+02 0.01 27.9 13.1 25 334-358 86-110 (246)
225 PF10498 IFT57: Intra-flagella 40.6 5.2E+02 0.011 29.5 13.9 53 381-433 267-319 (359)
226 KOG0962 DNA repair protein RAD 39.5 1.1E+03 0.023 31.6 40.7 129 298-435 241-373 (1294)
227 PF14992 TMCO5: TMCO5 family 39.4 5.6E+02 0.012 28.3 17.1 16 446-461 166-181 (280)
228 PF10267 Tmemb_cc2: Predicted 38.4 2.6E+02 0.0056 32.4 11.0 72 327-398 4-76 (395)
229 PF11932 DUF3450: Protein of u 36.9 2.7E+02 0.0058 29.8 10.5 42 522-563 43-84 (251)
230 PF15397 DUF4618: Domain of un 36.9 5.9E+02 0.013 27.8 27.8 29 429-457 189-217 (258)
231 PF14915 CCDC144C: CCDC144C pr 36.4 6.4E+02 0.014 28.1 29.3 66 382-453 4-69 (305)
232 KOG0999 Microtubule-associated 36.0 8.6E+02 0.019 29.4 45.8 62 287-360 100-161 (772)
233 KOG4403 Cell surface glycoprot 35.9 7.7E+02 0.017 28.8 16.7 38 520-557 334-372 (575)
234 PF02841 GBP_C: Guanylate-bind 35.7 6.3E+02 0.014 27.8 15.1 7 181-187 70-76 (297)
235 PF10267 Tmemb_cc2: Predicted 34.2 8E+02 0.017 28.5 16.1 28 213-240 56-83 (395)
236 KOG3990 Uncharacterized conser 33.8 2E+02 0.0044 31.0 8.5 18 378-395 226-243 (305)
237 PRK09841 cryptic autophosphory 33.5 9.3E+02 0.02 30.1 15.8 56 299-354 272-331 (726)
238 PRK11519 tyrosine kinase; Prov 33.4 9.5E+02 0.021 30.0 15.9 56 299-354 272-331 (719)
239 PF05010 TACC: Transforming ac 33.4 6E+02 0.013 26.8 28.4 67 373-449 79-145 (207)
240 PF06548 Kinesin-related: Kine 33.3 8.6E+02 0.019 28.6 27.2 28 521-548 281-308 (488)
241 COG2841 Uncharacterized protei 33.2 1.8E+02 0.0039 25.3 6.5 50 384-433 7-64 (72)
242 KOG1103 Predicted coiled-coil 33.2 7.6E+02 0.017 27.9 23.1 46 343-392 120-165 (561)
243 PF15290 Syntaphilin: Golgi-lo 33.1 3.6E+02 0.0079 29.6 10.3 71 373-453 57-130 (305)
244 cd00632 Prefoldin_beta Prefold 32.8 4E+02 0.0086 24.5 9.7 10 610-619 22-31 (105)
245 COG4026 Uncharacterized protei 32.5 3.9E+02 0.0084 28.5 10.1 70 635-704 126-195 (290)
246 KOG3859 Septins (P-loop GTPase 32.3 6.1E+02 0.013 28.2 11.9 23 328-350 342-364 (406)
247 TIGR03495 phage_LysB phage lys 32.2 5E+02 0.011 25.6 10.4 37 408-444 64-100 (135)
248 PF07139 DUF1387: Protein of u 32.1 3.9E+02 0.0085 29.7 10.7 40 524-563 196-235 (302)
249 KOG4603 TBP-1 interacting prot 31.7 5.8E+02 0.013 26.1 13.6 55 299-353 128-182 (201)
250 PRK13729 conjugal transfer pil 31.4 4.2E+02 0.009 31.4 11.3 39 664-702 82-120 (475)
251 TIGR00634 recN DNA repair prot 31.3 1E+03 0.022 28.8 24.4 29 332-360 264-292 (563)
252 KOG4673 Transcription factor T 31.2 1.1E+03 0.024 29.3 49.5 106 334-446 446-561 (961)
253 KOG0971 Microtubule-associated 30.6 1.3E+03 0.028 29.8 46.4 14 183-196 228-241 (1243)
254 PF14282 FlxA: FlxA-like prote 30.3 2.3E+02 0.005 26.5 7.5 27 407-433 50-76 (106)
255 KOG2129 Uncharacterized conser 29.8 9.5E+02 0.02 28.0 27.0 17 701-717 339-355 (552)
256 PF06156 DUF972: Protein of un 29.8 2.7E+02 0.0057 26.3 7.8 36 205-240 22-57 (107)
257 PF15456 Uds1: Up-regulated Du 29.3 5.1E+02 0.011 25.0 9.9 93 590-703 25-119 (124)
258 COG3883 Uncharacterized protei 29.3 7.9E+02 0.017 26.9 20.2 142 329-471 33-193 (265)
259 PF11559 ADIP: Afadin- and alp 29.0 5.6E+02 0.012 25.1 15.9 58 410-467 89-146 (151)
260 KOG4360 Uncharacterized coiled 29.0 1.1E+03 0.023 28.3 15.0 52 657-708 253-304 (596)
261 cd00632 Prefoldin_beta Prefold 28.5 4.7E+02 0.01 24.1 12.0 23 331-353 10-32 (105)
262 TIGR01843 type_I_hlyD type I s 28.4 9E+02 0.019 27.3 19.6 140 325-472 128-271 (423)
263 PF10212 TTKRSYEDQ: Predicted 28.2 1.1E+03 0.024 28.3 23.9 21 205-225 309-329 (518)
264 KOG0979 Structural maintenance 27.8 1.5E+03 0.032 29.6 26.7 29 591-619 867-895 (1072)
265 PRK12704 phosphodiesterase; Pr 27.4 1.1E+03 0.025 28.2 19.7 130 289-445 63-192 (520)
266 TIGR02231 conserved hypothetic 27.1 6E+02 0.013 30.3 12.2 26 592-617 76-101 (525)
267 PF10458 Val_tRNA-synt_C: Valy 27.1 3.3E+02 0.0072 23.0 7.4 59 333-393 3-62 (66)
268 PF09304 Cortex-I_coil: Cortex 26.7 5.5E+02 0.012 24.3 15.4 22 333-354 8-29 (107)
269 PF06785 UPF0242: Uncharacteri 26.5 9.8E+02 0.021 27.1 17.2 83 406-495 132-214 (401)
270 KOG2751 Beclin-like protein [S 26.5 1.1E+03 0.024 27.6 16.4 31 403-433 199-229 (447)
271 PF04102 SlyX: SlyX; InterPro 26.3 3.6E+02 0.0077 23.2 7.4 24 333-356 3-26 (69)
272 PF06705 SF-assemblin: SF-asse 26.2 8.2E+02 0.018 26.1 22.7 70 371-440 115-189 (247)
273 PF13815 Dzip-like_N: Iguana/D 26.0 3.5E+02 0.0076 25.6 8.1 55 639-693 61-115 (118)
274 KOG0239 Kinesin (KAR3 subfamil 25.9 1.4E+03 0.029 28.6 18.2 21 375-395 239-259 (670)
275 PRK11020 hypothetical protein; 25.5 4.5E+02 0.0097 25.1 8.3 48 300-347 4-51 (118)
276 PF12761 End3: Actin cytoskele 25.4 8E+02 0.017 25.7 11.0 84 297-384 99-192 (195)
277 PF05266 DUF724: Protein of un 25.2 7.8E+02 0.017 25.5 15.6 92 323-426 86-177 (190)
278 PF04420 CHD5: CHD5-like prote 25.2 2.3E+02 0.0051 28.4 7.1 54 338-394 37-90 (161)
279 PF07798 DUF1640: Protein of u 25.1 7.3E+02 0.016 25.1 17.1 17 442-458 133-149 (177)
280 PF09738 DUF2051: Double stran 24.4 1E+03 0.022 26.6 19.9 61 379-439 79-143 (302)
281 TIGR03017 EpsF chain length de 24.4 1.1E+03 0.024 27.0 23.2 26 132-157 128-153 (444)
282 TIGR03752 conj_TIGR03752 integ 24.3 2.6E+02 0.0057 33.0 8.1 82 528-618 59-140 (472)
283 PF12709 Kinetocho_Slk19: Cent 24.2 2E+02 0.0043 26.2 5.6 34 326-359 37-74 (87)
284 TIGR01010 BexC_CtrB_KpsE polys 24.2 1E+03 0.023 26.6 15.4 87 299-393 175-265 (362)
285 KOG1003 Actin filament-coating 24.1 8.5E+02 0.018 25.5 26.8 65 373-447 133-197 (205)
286 PF03962 Mnd1: Mnd1 family; I 23.8 8.2E+02 0.018 25.2 14.0 39 400-438 109-147 (188)
287 TIGR03545 conserved hypothetic 23.5 9.4E+02 0.02 29.2 12.9 10 123-132 33-42 (555)
288 KOG3990 Uncharacterized conser 23.5 3.4E+02 0.0075 29.3 8.0 70 291-361 222-294 (305)
289 PF10205 KLRAQ: Predicted coil 23.4 6.2E+02 0.014 23.7 9.4 51 380-430 8-62 (102)
290 PF10498 IFT57: Intra-flagella 23.4 1.1E+03 0.025 26.8 14.7 18 409-426 302-319 (359)
291 KOG4364 Chromatin assembly fac 23.3 1.5E+03 0.032 28.1 16.1 6 132-137 105-110 (811)
292 PF11068 YlqD: YlqD protein; 23.2 7.1E+02 0.015 24.3 10.4 60 328-390 21-80 (131)
293 PF15369 KIAA1328: Uncharacter 23.1 1.1E+03 0.024 26.6 12.3 30 327-356 33-62 (328)
294 KOG3859 Septins (P-loop GTPase 23.0 1.1E+03 0.023 26.4 12.0 80 325-425 317-401 (406)
295 PF05064 Nsp1_C: Nsp1-like C-t 23.0 74 0.0016 30.2 2.9 59 653-711 52-110 (116)
296 PF10458 Val_tRNA-synt_C: Valy 22.9 4.7E+02 0.01 22.1 8.2 16 341-356 4-19 (66)
297 KOG2189 Vacuolar H+-ATPase V0 22.8 2.3E+02 0.0051 35.3 7.5 85 665-749 92-182 (829)
298 KOG0163 Myosin class VI heavy 22.8 1.6E+03 0.035 28.3 20.4 18 17-34 197-214 (1259)
299 PTZ00419 valyl-tRNA synthetase 22.6 2.4E+02 0.0051 36.7 8.2 63 332-395 927-989 (995)
300 KOG1962 B-cell receptor-associ 22.4 9.6E+02 0.021 25.5 12.2 22 410-431 188-209 (216)
301 KOG4657 Uncharacterized conser 22.4 9.8E+02 0.021 25.6 17.0 37 386-422 64-100 (246)
302 PF11471 Sugarporin_N: Maltopo 22.3 1.4E+02 0.0031 25.1 4.1 26 663-688 30-55 (60)
303 PF14193 DUF4315: Domain of un 22.1 2.2E+02 0.0048 25.6 5.5 49 661-709 4-60 (83)
304 TIGR02132 phaR_Bmeg polyhydrox 21.9 8.9E+02 0.019 25.0 12.8 70 332-409 77-146 (189)
305 PF13863 DUF4200: Domain of un 21.7 6.7E+02 0.015 23.5 14.2 32 400-431 73-104 (126)
306 PF05130 FlgN: FlgN protein; 21.3 5.6E+02 0.012 23.9 8.7 90 617-706 20-125 (143)
307 PRK11546 zraP zinc resistance 21.0 7.3E+02 0.016 24.7 9.3 68 287-359 47-114 (143)
308 PF07106 TBPIP: Tat binding pr 20.8 8.4E+02 0.018 24.3 12.1 25 297-321 82-106 (169)
309 TIGR02231 conserved hypothetic 20.7 9.3E+02 0.02 28.7 12.2 30 779-808 431-460 (525)
310 PF11365 DUF3166: Protein of u 20.7 6.8E+02 0.015 23.2 8.8 79 304-394 4-86 (96)
311 COG1340 Uncharacterized archae 20.6 1.2E+03 0.026 26.0 32.1 55 332-394 46-100 (294)
312 PF15079 DUF4546: Domain of un 20.6 4.9E+02 0.011 26.5 7.9 58 298-360 51-108 (205)
313 TIGR03319 YmdA_YtgF conserved 20.2 1.5E+03 0.033 27.1 19.6 130 289-445 57-186 (514)
314 KOG3759 Uncharacterized RUN do 20.1 1.5E+03 0.032 26.9 16.6 87 329-415 84-195 (621)
No 1
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.7e-92 Score=816.75 Aligned_cols=655 Identities=41% Similarity=0.553 Sum_probs=571.2
Q ss_pred CHHHHHHHhhcCccccCCCCcccCcceeeeEEEEEeeeccCCCCCCCCCCCCCccchhhhceeeeeecCCCccccccCCc
Q 003293 1 MAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSD 80 (833)
Q Consensus 1 ~~~~l~~G~~~R~~~~T~~N~~SSRSHaIfti~i~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~~~ 80 (833)
+.++|..|...|++++|+||..|||||+||||++++..+... ..+.+|||||||||||||.++|+++
T Consensus 168 ~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~-------------~s~~~sKlhlVDLAGSER~kkT~a~ 234 (913)
T KOG0244|consen 168 LLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSK-------------RSSFCSKLHLVDLAGSERVKKTKAE 234 (913)
T ss_pred HHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhc-------------cchhhhhhheeeccccccccccccc
Confidence 467899999999999999999999999999999998765422 2267899999999999999999999
Q ss_pred ccccchhhhhhhhhhHHHHHHHHhccccCCCCCccccCCCcchhhhhcccCCCCcceeEEeecCCCCCCHHHHHHHHHHH
Q 003293 81 GLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYA 160 (833)
Q Consensus 81 g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkLTrLLqdsLgGns~t~mI~~VSP~~~~~~ETlsTL~fA 160 (833)
|+|++||++||.+|++|||||+||++.++ ++|||||||+|||||||+||||+.|+||+||||++.|+.||++||+||
T Consensus 235 gdrlKEgInIN~gLL~LgnVIsaLg~~kk---~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya 311 (913)
T KOG0244|consen 235 GDRLKEGININGGLLALGNVISALGEAKK---GGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYA 311 (913)
T ss_pred hhhhhhccCcchHHHHHHHHHHHHHhhhc---CCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHh
Confidence 99999999999999999999999999875 689999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccccccCCcchHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003293 161 NRARNIQNKPIVNRDPMSTEMLKMRQQLEFLQAELCARGGGSSSDEVQVLKERIAWLEAANEDLCRELHEYRSRCTDVEQ 240 (833)
Q Consensus 161 ~rar~I~n~p~vn~d~~~~~i~~l~~~i~~L~~el~~~~~g~~s~~~~~Lkeki~~Le~ene~L~~EL~e~r~rl~~leq 240 (833)
.||+.|+|+|+||.||...++..++.+|+.|+.++....|.....++..+..++..++..++.+..++++.+..|.....
T Consensus 312 ~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~~~~~~~ei~sl~~e~~~l~~~~d~~~~e~~e~~s~~s~~~~ 391 (913)
T KOG0244|consen 312 DRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKAGDELDAEINSLPFENVTLEETLDALLQEKGEERSTLSSKSL 391 (913)
T ss_pred hHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhccccchhHHhhhhhhhhhhhhhHHHHhcchhhhhhhhhHHHH
Confidence 99999999999999999999999999999999999888766667899999999999999999999999999887755443
Q ss_pred HHHHhhcCC------------------CC--CCcchhhhhhhhhhccccccccccCC--CCchhHHHHHHHHHHHHHHhH
Q 003293 241 RETDAQDGS------------------PC--PLKSDGLKRSLNSIEQTDYQMGENIT--GDSREIDEVAKEWEHTLLQNS 298 (833)
Q Consensus 241 ~~~d~q~~~------------------~~--~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ake~E~~~~Q~~ 298 (833)
+...+.... .. .-+...|.+.++.+.+...++..... ++...-....+.++|+..|..
T Consensus 392 ~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~v~~~~~e~~~~~~~~~~e~~~~~~~~~~~~~~~q~~ 471 (913)
T KOG0244|consen 392 KLTGAEKEKDKLRRRTDSCMNLLSEDSNEDASDKSASLPKPLEPVDSGTEEIGMNTDTSGDEAAEKELSETIGHPQKQGS 471 (913)
T ss_pred hcchhhhhHHHHHHHHHHHHHHHHHhHhHHhhhccccCCccccccccccccccccccCCCchhhhcccccCccchHHHhh
Confidence 322221100 00 00001122222222211111111111 111111122456889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHH
Q 003293 299 MDKELNELNRRLEEKESEMKLVGG--SDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHA 376 (833)
Q Consensus 299 l~~EL~eLnkqLe~KE~e~k~~~~--~~~~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~e 376 (833)
|..++.+++++|++|+.+++.+.. .....++++|+.++..|+.++..++.|+++|..+|..... ...++.++|.
T Consensus 472 ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~----~~~kl~eer~ 547 (913)
T KOG0244|consen 472 LSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNR----LAAKLGEERV 547 (913)
T ss_pred hhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhH----HHHHhhhHHH
Confidence 999999999999999999998875 4567899999999999999999999999999999987732 7899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003293 377 HKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEG 456 (833)
Q Consensus 377 kkLqeLE~ei~~LkkK~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~eKEi~qLKke~ 456 (833)
++|+.||.++..|++++.+|..+++.+.+.+....+|..||..||.++|+|+++|++++++|+.||+..+||++|+++++
T Consensus 548 qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~~~~~d~ekfr~~K~~~~Ke~~qlk~~~ 627 (913)
T KOG0244|consen 548 QKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLRVMKEDAEKFRQWKDRTEKEWNQLKGQE 627 (913)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHhhhhh-ccccccccCCCCCCCCcchHHHHHHHHHHHHHHH
Q 003293 457 RRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESRKSS-ARENSAVTNGNLTNGQSNEKSFQRWLDHELEVMV 535 (833)
Q Consensus 457 rK~~~e~~kLe~~~~kQ~~VLkRKtEEa~aa~kRLK~~le~rK~~-~r~~~~~~~~~~~~~~~~~~~~~~Wle~e~ev~~ 535 (833)
|++++++.+++..+.+|..||+|+|+|++++++||++++.+|+.+ +.......+| ....+...|+++++++++
T Consensus 628 rk~~~~~~~~~~l~~~q~~vl~~kt~eas~~~krlk~a~~~r~~~~s~~~~~~~~~------~~~~~~~~~~~~e~ei~~ 701 (913)
T KOG0244|consen 628 RKSEGEHPKLEVLVKKQNYVLQRKTEEASAANKRLKEALCIRALTSSGQVTLGDNG------ASTSRTVAWPSNEIEINQ 701 (913)
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhcC------chhHHHHHHhccchHHHH
Confidence 999999999999999999999999999999999999999999977 3343333443 234567999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhcCCCCCCCCCcccccccCChhhHHHHHHHHHHHHhhchHHHHHHHH
Q 003293 536 NVHEVRFDYEKQSQVRAALAEELAVLKQVDEFASKGLSPPRGKNGFARVSSMSPNARMARISSLENMLSISSNSLVAMAS 615 (833)
Q Consensus 536 ~~~e~~~~le~l~~~R~~L~~el~~Lk~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~aqI~~Le~~~~~~~~~l~~l~~ 615 (833)
.+.+++.+|+.++++|+.+..++..++... ..+|.+|+.+++..+.+|.+|++
T Consensus 702 ~~~~~~~~l~~~~~~ra~~~~d~~~~r~~~---------------------------~k~l~~L~~~~~~~~~~i~s~~~ 754 (913)
T KOG0244|consen 702 IALNPRGTLLYAAEERAVRMWDLKRLRSEG---------------------------KKLLGSLEPVMELTSDQISSMQD 754 (913)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHhhhHHHHHHHHHHHHhHHh
Confidence 999999999999999999999999998742 45799999999999999999999
Q ss_pred HhHHHhhhhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHh-------HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 616 QLSEAEERDRLFTNRGRWNQLRSMADAKNLLQYMFNSLADARCQLW-------EKDIEIKEMKEQLKELVGLLRQSEVRR 688 (833)
Q Consensus 616 kl~e~ee~~r~~~~~~rw~~irs~~eAk~~l~~L~~~~~~~r~~~~-------~~~~el~e~k~~~~~l~~~l~~~e~q~ 688 (833)
++.+++.+.+... +|+++.|+.+||+.+.|+|+.++..|+..+ ++...+.++.+++...+..|+..+.+.
T Consensus 755 ~i~~a~~d~~~~~---~w~~v~t~~~ak~~~~~~~~~~~~~r~~~~~~~~~~re~~~~~~~l~~kl~~~q~~~rk~e~~~ 831 (913)
T KOG0244|consen 755 LIITASKDERIKM---RWEAVGTLSEAKNFEPYLYDGIVALRIQGDNLFSGSREKGIKKWDLTQKLLDEQVNLRKDEVQA 831 (913)
T ss_pred hhcccccchhHHH---HHhcccccccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988877433 999999999999999999999999999888 566778889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 003293 689 KEVEEELKLREQAVAITLARSAS 711 (833)
Q Consensus 689 ~~l~~~~~~~~~~~~~~l~~~~~ 711 (833)
++++++...+.+.+.+++++...
T Consensus 832 ~~~v~e~~~~~~~~~~~~~~~~~ 854 (913)
T KOG0244|consen 832 LGVVPEHPVLLSGCKGGILKVWQ 854 (913)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999998754
No 2
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.3e-44 Score=420.63 Aligned_cols=181 Identities=51% Similarity=0.690 Sum_probs=166.0
Q ss_pred HHHHHHHhhcCccccCCCCcccCcceeeeEEEEEeeeccCCCCCCCCCCCCCccchhhhceeeeeecCCCccccccCCcc
Q 003293 2 AACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDG 81 (833)
Q Consensus 2 ~~~l~~G~~~R~~~~T~~N~~SSRSHaIfti~i~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~~~g 81 (833)
+.+|+.|...|+|++|.||..|||||+||+|+|+.... ...+.+.+.+|||+||||||||.++++|+.+
T Consensus 242 ~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~-----------t~~geelvK~GKLNLVDLAGSENI~RSGA~~ 310 (1041)
T KOG0243|consen 242 YKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKEN-----------TPEGEELVKIGKLNLVDLAGSENISRSGARN 310 (1041)
T ss_pred HHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecC-----------CCcchhhHhhcccceeecccccccccccccc
Confidence 67999999999999999999999999999999986431 1113456788999999999999999999999
Q ss_pred cccchhhhhhhhhhHHHHHHHHhccccCCCCCccccCCCcchhhhhcccCCCCcceeEEeecCCCCCCHHHHHHHHHHHH
Q 003293 82 LRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYAN 161 (833)
Q Consensus 82 ~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkLTrLLqdsLgGns~t~mI~~VSP~~~~~~ETlsTL~fA~ 161 (833)
.|.+|++.||+||++||+||+||++.. +|||||+|||||||||||||..+|+|||||||+..+++||++||.||.
T Consensus 311 ~RArEAG~INqSLLTLGRVInALVe~s-----~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~ 385 (1041)
T KOG0243|consen 311 GRAREAGEINQSLLTLGRVINALVEHS-----GHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAH 385 (1041)
T ss_pred chhHHhhhhhHHHHHHHHHHHHHHccC-----CCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHH
Confidence 999999999999999999999999975 499999999999999999999999999999999999999999999999
Q ss_pred HhhcccccccccCCcc-hHHHHHHHHHHHHHHHHHhhc
Q 003293 162 RARNIQNKPIVNRDPM-STEMLKMRQQLEFLQAELCAR 198 (833)
Q Consensus 162 rar~I~n~p~vn~d~~-~~~i~~l~~~i~~L~~el~~~ 198 (833)
||++|+|+|.+|+-.+ .+.+..|-.+|+.|+.+|.+.
T Consensus 386 RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~Aa 423 (1041)
T KOG0243|consen 386 RAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAA 423 (1041)
T ss_pred HhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998765 566889999999999999643
No 3
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-48 Score=452.00 Aligned_cols=214 Identities=46% Similarity=0.687 Sum_probs=183.3
Q ss_pred HHHHHHHhhcCccccCCCCcccCcceeeeEEEEEeeeccCCCCCCCCCCCCCccchhhhceeeeeecCCCccccccCCcc
Q 003293 2 AACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDG 81 (833)
Q Consensus 2 ~~~l~~G~~~R~~~~T~~N~~SSRSHaIfti~i~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~~~g 81 (833)
.+++..|++.|+|++|+||+.|||||+||||++.|..-.. .+ ......+||++|||||||||+..+|+.|
T Consensus 192 ~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~------~~----~l~sek~SKIsLVDLAGSERasstGa~G 261 (1221)
T KOG0245|consen 192 QDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQ------DT----GLDSEKVSKISLVDLAGSERASSTGANG 261 (1221)
T ss_pred HHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccc------cC----CCcceeeeeeeEEeccCcccccccCCCc
Confidence 4789999999999999999999999999999999964311 11 1234578999999999999999999999
Q ss_pred cccchhhhhhhhhhHHHHHHHHhccccC--CCCCccccCCCcchhhhhcccCCCCcceeEEeecCCCCCCHHHHHHHHHH
Q 003293 82 LRFKEGVHINRGLLALGNVISALGDDKK--RKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKY 159 (833)
Q Consensus 82 ~r~kE~~~IN~SL~aLg~vI~aL~~~~~--~~~~~~iPyRdSkLTrLLqdsLgGns~t~mI~~VSP~~~~~~ETlsTL~f 159 (833)
+|+|||.+||+||++||.||+||++..+ .++..+||||||-||.||+++|||||+|.|||++||++.||+|||+||||
T Consensus 262 ~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRY 341 (1221)
T KOG0245|consen 262 DRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAMIAALSPADINYEETLSTLRY 341 (1221)
T ss_pred cchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhhhhccChhhcChHHHHHHHHH
Confidence 9999999999999999999999998653 34557999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccccccCCcchHHHHHHHHHHHHHHHHHhhcCCCCC-----------hHHHHHHHHHHHHHHHHHHHHH
Q 003293 160 ANRARNIQNKPIVNRDPMSTEMLKMRQQLEFLQAELCARGGGSS-----------SDEVQVLKERIAWLEAANEDLC 225 (833)
Q Consensus 160 A~rar~I~n~p~vn~d~~~~~i~~l~~~i~~L~~el~~~~~g~~-----------s~~~~~Lkeki~~Le~ene~L~ 225 (833)
|+|||.|+|.++||.||....|+.|++++.+|+..+...+.+.. ..++..+.+++..-+....++.
T Consensus 342 AdRAK~Iv~~avVNEdpnaKLIRELreEv~rLksll~~~~~~~~~~~~~p~~~~~~~~~e~~~~~L~E~Ek~mael~ 418 (1221)
T KOG0245|consen 342 ADRAKQIVNNAVVNEDPNAKLIRELREEVARLKSLLRAQGLGDIAVEGSPSALLSQPEIEELRERLQETEKIMAELN 418 (1221)
T ss_pred hhHhhhhhccceeCCCccHHHHHHHHHHHHHHHHHHhccccccccccCCcccccccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876654421 2345555555554444444443
No 4
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-48 Score=443.58 Aligned_cols=183 Identities=53% Similarity=0.735 Sum_probs=169.5
Q ss_pred CHHHHHHHhhcCccccCCCCcccCcceeeeEEEEEeeeccCCCCCCCCCCCCCccchhhhceeeeeecCCCccccccCCc
Q 003293 1 MAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSD 80 (833)
Q Consensus 1 ~~~~l~~G~~~R~~~~T~~N~~SSRSHaIfti~i~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~~~ 80 (833)
+..+|..|..+|++|+|+||..|||||+||||+|++..... .....+.+|+|+|||||||||..+|++.
T Consensus 186 ~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~-----------~~~~~~~~~rlnlvDLagsEr~~~tga~ 254 (574)
T KOG4280|consen 186 AQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSD-----------GGLMSGRSSKLNLVDLAGSERQSKTGAE 254 (574)
T ss_pred HHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccC-----------CCccccccceeeeeeccchhhhcccCcc
Confidence 35789999999999999999999999999999999832211 1123467899999999999999999999
Q ss_pred ccccchhhhhhhhhhHHHHHHHHhccccCCCCCccccCCCcchhhhhcccCCCCcceeEEeecCCCCCCHHHHHHHHHHH
Q 003293 81 GLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYA 160 (833)
Q Consensus 81 g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkLTrLLqdsLgGns~t~mI~~VSP~~~~~~ETlsTL~fA 160 (833)
|+|++|+.+||+||++||+||++|+++++ +||||||||||+||||||||||+|+|||||||+..+++||++||+||
T Consensus 255 G~rlkEa~~IN~SLs~LG~vI~aLvd~~~----~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTLrfA 330 (574)
T KOG4280|consen 255 GERLKEATNINLSLSALGNVISALVDGSK----THIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTLRFA 330 (574)
T ss_pred chhhhhhcccchhHHHHHHHHHHHhcccc----CCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHHHHH
Confidence 99999999999999999999999999875 39999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccccccCCcchHHHHHHHHHHHHHHHHHhhc
Q 003293 161 NRARNIQNKPIVNRDPMSTEMLKMRQQLEFLQAELCAR 198 (833)
Q Consensus 161 ~rar~I~n~p~vn~d~~~~~i~~l~~~i~~L~~el~~~ 198 (833)
+||+.|+|+|+||.||..+.+..|+.+|+.|+.++...
T Consensus 331 ~Rak~I~nk~~ined~~~~~~~~lq~ei~~Lk~~l~~~ 368 (574)
T KOG4280|consen 331 QRAKAIKNKPVINEDPKDALLRELQEEIERLKKELDPG 368 (574)
T ss_pred HHHHHhhccccccCCcchhhHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999654
No 5
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=9.5e-42 Score=378.65 Aligned_cols=161 Identities=49% Similarity=0.750 Sum_probs=149.8
Q ss_pred CHHHHHHHhhcCccccCCCCcccCcceeeeEEEEEeeeccCCCCCCCCCCCCCccchhhhceeeeeecCCCccccccCCc
Q 003293 1 MAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSD 80 (833)
Q Consensus 1 ~~~~l~~G~~~R~~~~T~~N~~SSRSHaIfti~i~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~~~ 80 (833)
+++++..|..+|+++.|+||.+|||||+||+|+|.|.+. .+...++|+|+||||||||++.++|+.
T Consensus 184 v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~--------------e~~~~~~gkLyLVDLaGSEkvsKtga~ 249 (607)
T KOG0240|consen 184 VLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENV--------------EDKRKLSGKLYLVDLAGSEKVSKTGAE 249 (607)
T ss_pred HHHHHhcccccchhhhccccccccccceEEEEEEEeccc--------------cchhhccccEEEEEcccccccCCCCcc
Confidence 467889999999999999999999999999999999543 134578899999999999999999999
Q ss_pred ccccchhhhhhhhhhHHHHHHHHhccccCCCCCccccCCCcchhhhhcccCCCCcceeEEeecCCCCCCHHHHHHHHHHH
Q 003293 81 GLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYA 160 (833)
Q Consensus 81 g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkLTrLLqdsLgGns~t~mI~~VSP~~~~~~ETlsTL~fA 160 (833)
|.-+.|+.+||+||.|||+||+||+++.+ .|||||||||||+|+|||||||+|++|.|+||+..|..||.+||+|+
T Consensus 250 g~vleEaK~INkSLsaLgnvI~aLa~g~~----shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl~fg 325 (607)
T KOG0240|consen 250 GAVLEEAKNINKSLSALGNVINALAEGPK----SHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTLRFG 325 (607)
T ss_pred chhHHHHhhhhhhHHHHHHHHHHHhcCCC----CCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccccccccchhhc
Confidence 99999999999999999999999999853 69999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccccccCCcchH
Q 003293 161 NRARNIQNKPIVNRDPMST 179 (833)
Q Consensus 161 ~rar~I~n~p~vn~d~~~~ 179 (833)
.||+.|+|.+.+|......
T Consensus 326 ~rak~ikN~v~~n~e~~~e 344 (607)
T KOG0240|consen 326 NRAKTIKNTVWVNLELTAE 344 (607)
T ss_pred cccccccchhhhhhHhhHH
Confidence 9999999999999866543
No 6
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=2.4e-42 Score=411.10 Aligned_cols=185 Identities=41% Similarity=0.606 Sum_probs=159.2
Q ss_pred CHHHHHHHhhcCccccCCCCcccCcceeeeEEEEEeeeccCCCCCCCCCCCCCccchhhhceeeeeecCCCccccccCCc
Q 003293 1 MAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSD 80 (833)
Q Consensus 1 ~~~~l~~G~~~R~~~~T~~N~~SSRSHaIfti~i~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~~~ 80 (833)
+..+|..|..+|++++|.||..|||||+||+|+|++...... +....+.+|+|+|||||||||.+++++.
T Consensus 279 ~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~----------dg~ss~r~SkLnLVDLAGSER~kkTga~ 348 (1320)
T PLN03188 279 VTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVA----------DGLSSFKTSRINLVDLAGSERQKLTGAA 348 (1320)
T ss_pred HHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccC----------CCCcceEEEEEEEEECCCchhccccCcc
Confidence 357899999999999999999999999999999987543110 1112346799999999999999999999
Q ss_pred ccccchhhhhhhhhhHHHHHHHHhccccCCCCCccccCCCcchhhhhcccCCCCcceeEEeecCCCCCCHHHHHHHHHHH
Q 003293 81 GLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYA 160 (833)
Q Consensus 81 g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkLTrLLqdsLgGns~t~mI~~VSP~~~~~~ETlsTL~fA 160 (833)
|.+++|+++||+||++||+||.+|++....++..||||||||||+||+|+|||||+|+|||||||+..++.||++||+||
T Consensus 349 G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFA 428 (1320)
T PLN03188 349 GDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFA 428 (1320)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999997554445679999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccccccCCcch------HHHHHHHHHHHHHHHHH
Q 003293 161 NRARNIQNKPIVNRDPMS------TEMLKMRQQLEFLQAEL 195 (833)
Q Consensus 161 ~rar~I~n~p~vn~d~~~------~~i~~l~~~i~~L~~el 195 (833)
.||+.|+|+|++|..... ..|.+|+.+|..|+...
T Consensus 429 sRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL~rLK~~~ 469 (1320)
T PLN03188 429 QRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQRVKANG 469 (1320)
T ss_pred HHHhhcCccceeccchhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999986432 24555666666666553
No 7
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-40 Score=378.97 Aligned_cols=187 Identities=50% Similarity=0.710 Sum_probs=168.8
Q ss_pred HHHHHHHhhcCccccCCCCcccCcceeeeEEEEEeeeccCCCCCCCCCCCCCccchhhhceeeeeecCCCccccccCCcc
Q 003293 2 AACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDG 81 (833)
Q Consensus 2 ~~~l~~G~~~R~~~~T~~N~~SSRSHaIfti~i~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~~~g 81 (833)
.+++..|+++|++++|+||..|||||+||.|.|.|.-- +. ..+ ...-.+|+|.|||||||||+.++|+.|
T Consensus 196 d~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~-D~-ktg--------~SgeKvsklslVDLAgserasktga~g 265 (1714)
T KOG0241|consen 196 DSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLY-DL-KTG--------HSGEKVSKLSLVDLAGSERASKTGAAG 265 (1714)
T ss_pred HHHHHhccccceeeeecccccccccceeEEEEEeeEEe-cc-ccC--------cchhheeeeeEEEeccccccccccchh
Confidence 46889999999999999999999999999999998522 11 011 112357999999999999999999999
Q ss_pred cccchhhhhhhhhhHHHHHHHHhccccCC-CCCccccCCCcchhhhhcccCCCCcceeEEeecCCCCCCHHHHHHHHHHH
Q 003293 82 LRFKEGVHINRGLLALGNVISALGDDKKR-KEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYA 160 (833)
Q Consensus 82 ~r~kE~~~IN~SL~aLg~vI~aL~~~~~~-~~~~~iPyRdSkLTrLLqdsLgGns~t~mI~~VSP~~~~~~ETlsTL~fA 160 (833)
.|++||.+||+||++||.||++|++.+.. +++.+||||||-||.||+|+|||||+|+||+||||+.+||+||++|||||
T Consensus 266 ~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYa 345 (1714)
T KOG0241|consen 266 SRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYA 345 (1714)
T ss_pred hhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHH
Confidence 99999999999999999999999986542 34679999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccccccCCcchHHHHHHHHHHHHHHHHHhhc
Q 003293 161 NRARNIQNKPIVNRDPMSTEMLKMRQQLEFLQAELCAR 198 (833)
Q Consensus 161 ~rar~I~n~p~vn~d~~~~~i~~l~~~i~~L~~el~~~ 198 (833)
.||++|+|..+||.||....|+.+|.+++.|+.+|...
T Consensus 346 drAkrIvN~avvNedpnarvirElReEve~lr~qL~~a 383 (1714)
T KOG0241|consen 346 DRAKRIVNHAVVNEDPNARVIRELREEVEKLREQLEQA 383 (1714)
T ss_pred HHHHHhhccccccCCchHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999653
No 8
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-40 Score=391.37 Aligned_cols=180 Identities=54% Similarity=0.770 Sum_probs=161.1
Q ss_pred CHHHHHHHhhcCccccCCCCcccCcceeeeEEEEEeeeccCCCCCCCCCCCCCccchhhhceeeeeecCCCccccccCCc
Q 003293 1 MAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSD 80 (833)
Q Consensus 1 ~~~~l~~G~~~R~~~~T~~N~~SSRSHaIfti~i~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~~~ 80 (833)
+..+|..|+.+|++|.|+||..|||||+||+|+|.+..... + . ..|+|+|||||||||+.+|++.
T Consensus 184 ~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~-----------~---~-~~s~L~lIDLAGSERas~T~~~ 248 (675)
T KOG0242|consen 184 LLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREA-----------S---S-RVSKLNLIDLAGSERASRTGNE 248 (675)
T ss_pred HHHHHHHhhccCcccccccccccchhhheeeEEEEeccccc-----------c---c-hhheehhhhhhhhhhhhhhhcc
Confidence 35789999999999999999999999999999999854311 0 1 6789999999999999999999
Q ss_pred ccccchhhhhhhhhhHHHHHHHHhccccCCCCCccccCCCcchhhhhcccCCCCcceeEEeecCCCCCCHHHHHHHHHHH
Q 003293 81 GLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYA 160 (833)
Q Consensus 81 g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkLTrLLqdsLgGns~t~mI~~VSP~~~~~~ETlsTL~fA 160 (833)
|.|++||.+||+||++||+||++|+++.. ..|||||||||||||||+|||||+|+|||||+|+..+|+||.+||+||
T Consensus 249 G~RlkEG~~INrSLlaLgtVI~~Ls~~~~---~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fA 325 (675)
T KOG0242|consen 249 GVRLKEGAHINRSLLALGTVINKLSEGKR---PRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFA 325 (675)
T ss_pred ceeccccchhhHHHHHHHHHHHHHccccc---cCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999854 349999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccccccCCcchHHHH-HHHHHHHHHHHHHhhc
Q 003293 161 NRARNIQNKPIVNRDPMSTEML-KMRQQLEFLQAELCAR 198 (833)
Q Consensus 161 ~rar~I~n~p~vn~d~~~~~i~-~l~~~i~~L~~el~~~ 198 (833)
+||++|++++.+|.-.....+. .++.++..|+.++...
T Consensus 326 srak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~ 364 (675)
T KOG0242|consen 326 SRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERL 364 (675)
T ss_pred HHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhh
Confidence 9999999999999876655444 4458888888888553
No 9
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=7.7e-39 Score=354.04 Aligned_cols=153 Identities=50% Similarity=0.697 Sum_probs=138.0
Q ss_pred CHHHHHHHhhcCccccCCCCcccCcceeeeEEEEEeeeccCCCCCCCCCCCCCccchhhhceeeeeecCCCccccccCCc
Q 003293 1 MAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSD 80 (833)
Q Consensus 1 ~~~~l~~G~~~R~~~~T~~N~~SSRSHaIfti~i~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~~~ 80 (833)
+.++|..|..+|++++|.+|..|||||+||+|+|.+...... ......|+|+|||||||||..+++++
T Consensus 185 ~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~------------~~~~~~s~l~~VDLAGSEr~~~~~~~ 252 (337)
T cd01373 185 VYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKAS------------STNIRTSRLNLVDLAGSERQKDDGAE 252 (337)
T ss_pred HHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCC------------CCcEEEEEEEEEECCCCCcccccCCc
Confidence 357899999999999999999999999999999987543211 11345799999999999999999999
Q ss_pred ccccchhhhhhhhhhHHHHHHHHhccccCCCCCccccCCCcchhhhhcccCCCCcceeEEeecCCCCCCHHHHHHHHHHH
Q 003293 81 GLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYA 160 (833)
Q Consensus 81 g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkLTrLLqdsLgGns~t~mI~~VSP~~~~~~ETlsTL~fA 160 (833)
|.+++|+.+||+||++||+||.+|++... ....||||||||||+||+|+|||||+|+|||||||+..+++||++||+||
T Consensus 253 g~~~~E~~~IN~SL~~L~~vi~aL~~~~~-~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa 331 (337)
T cd01373 253 GVRLKEAKNINKSLSTLGHVIMALVDVAH-GKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFA 331 (337)
T ss_pred cHhhhhhccccHHHHHHHHHHHHHHhhcc-CCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCCcccHHHHHHHHHHH
Confidence 99999999999999999999999987543 23579999999999999999999999999999999999999999999999
Q ss_pred HHhhcc
Q 003293 161 NRARNI 166 (833)
Q Consensus 161 ~rar~I 166 (833)
.||+.|
T Consensus 332 ~rak~I 337 (337)
T cd01373 332 QRAKLI 337 (337)
T ss_pred HHhhcC
Confidence 999987
No 10
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=4.1e-38 Score=348.42 Aligned_cols=153 Identities=58% Similarity=0.800 Sum_probs=139.6
Q ss_pred CHHHHHHHhhcCccccCCCCcccCcceeeeEEEEEeeeccCCCCCCCCCCCCCccchhhhceeeeeecCCCccccccCCc
Q 003293 1 MAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSD 80 (833)
Q Consensus 1 ~~~~l~~G~~~R~~~~T~~N~~SSRSHaIfti~i~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~~~ 80 (833)
++.+|..|..+|++++|.||..|||||+||+|+|.+..... +.+.....|+|+|||||||||..++++.
T Consensus 186 ~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~-----------~~~~~~~~s~l~~VDLAGsEr~~~~~~~ 254 (338)
T cd01370 186 ILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTA-----------SINQQVRIGKLSLIDLAGSERASATNNR 254 (338)
T ss_pred HHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCC-----------CCCCcEEEEEEEEEECCCCccccccCCC
Confidence 36789999999999999999999999999999999865421 1123467799999999999999999999
Q ss_pred ccccchhhhhhhhhhHHHHHHHHhccccCCCCCccccCCCcchhhhhcccCCCCcceeEEeecCCCCCCHHHHHHHHHHH
Q 003293 81 GLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYA 160 (833)
Q Consensus 81 g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkLTrLLqdsLgGns~t~mI~~VSP~~~~~~ETlsTL~fA 160 (833)
|.+++|+.+||+||++|++||.+|+.+.. ...||||||||||+||+|+|||||+|+|||||||+..+++||++||+||
T Consensus 255 g~~~~E~~~IN~SL~~L~~vi~~L~~~~~--~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa 332 (338)
T cd01370 255 GQRLKEGANINRSLLALGNCINALVDGKK--KNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYA 332 (338)
T ss_pred CccccccchhhHHHHHHHHHHHHHHhccC--CCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999998763 3469999999999999999999999999999999999999999999999
Q ss_pred HHhhcc
Q 003293 161 NRARNI 166 (833)
Q Consensus 161 ~rar~I 166 (833)
+||++|
T Consensus 333 ~ra~~I 338 (338)
T cd01370 333 NRAKNI 338 (338)
T ss_pred HHhccC
Confidence 999987
No 11
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1.5e-37 Score=346.04 Aligned_cols=158 Identities=55% Similarity=0.761 Sum_probs=144.6
Q ss_pred HHHHHHHhhcCccccCCCCcccCcceeeeEEEEEeeeccCCCCCCCCCCCCCccchhhhceeeeeecCCCccccccCCcc
Q 003293 2 AACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDG 81 (833)
Q Consensus 2 ~~~l~~G~~~R~~~~T~~N~~SSRSHaIfti~i~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~~~g 81 (833)
.++|..|..+|++++|.+|..|||||+||+|+|.+...... .......|+|+||||||||+.+++++.|
T Consensus 195 ~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~-----------~~~~~~~s~l~~VDLAGsE~~~~~~~~~ 263 (352)
T cd01364 195 LKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTIS-----------GEELVKIGKLNLVDLAGSENIGRSGAEN 263 (352)
T ss_pred HHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCC-----------CCccEEEEEEEEEECCCccccccccCcc
Confidence 57899999999999999999999999999999998543110 1122456999999999999999999999
Q ss_pred cccchhhhhhhhhhHHHHHHHHhccccCCCCCccccCCCcchhhhhcccCCCCcceeEEeecCCCCCCHHHHHHHHHHHH
Q 003293 82 LRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYAN 161 (833)
Q Consensus 82 ~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkLTrLLqdsLgGns~t~mI~~VSP~~~~~~ETlsTL~fA~ 161 (833)
.+++|+..||+||++|++||.+|+.+. .|||||+|+||+||+|+|||||+|+||+||||+..+++||++||+||.
T Consensus 264 ~~~~e~~~iN~SL~~L~~vi~al~~~~-----~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~ 338 (352)
T cd01364 264 KRAREAGNINQSLLTLGRVINALVEKS-----PHIPYRESKLTRLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAH 338 (352)
T ss_pred hhhHHHhhhhHHHHHHHHHHHHHHcCC-----CCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHH
Confidence 999999999999999999999998765 499999999999999999999999999999999999999999999999
Q ss_pred HhhcccccccccCC
Q 003293 162 RARNIQNKPIVNRD 175 (833)
Q Consensus 162 rar~I~n~p~vn~d 175 (833)
+|++|+|+|++|.|
T Consensus 339 ~~~~i~n~P~~n~~ 352 (352)
T cd01364 339 RAKNIKNKPEVNQK 352 (352)
T ss_pred HHhhccCccccCCC
Confidence 99999999999975
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=2.2e-37 Score=345.07 Aligned_cols=162 Identities=56% Similarity=0.775 Sum_probs=146.5
Q ss_pred HHHHHHHhhcCccccCCCCcccCcceeeeEEEEEeeeccCCCCCCCCCCCCCccchhhhceeeeeecCCCccccccCCcc
Q 003293 2 AACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDG 81 (833)
Q Consensus 2 ~~~l~~G~~~R~~~~T~~N~~SSRSHaIfti~i~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~~~g 81 (833)
..+|..|..+|++++|.+|..|||||+||+|+|.+...... ........|+|+|||||||||..+++..|
T Consensus 192 ~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~----------~~~~~~~~s~l~~VDLAGsEr~~~~~~~~ 261 (356)
T cd01365 192 QNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKE----------TDLTTEKVSKISLVDLAGSERASSTGAEG 261 (356)
T ss_pred HHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccC----------CCCCceEEEEEEeeecccccccccccccc
Confidence 57899999999999999999999999999999998543210 11234567999999999999999999999
Q ss_pred cccchhhhhhhhhhHHHHHHHHhccccCC---CCCccccCCCcchhhhhcccCCCCcceeEEeecCCCCCCHHHHHHHHH
Q 003293 82 LRFKEGVHINRGLLALGNVISALGDDKKR---KEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLK 158 (833)
Q Consensus 82 ~r~kE~~~IN~SL~aLg~vI~aL~~~~~~---~~~~~iPyRdSkLTrLLqdsLgGns~t~mI~~VSP~~~~~~ETlsTL~ 158 (833)
.+++|+.+||+||++|++||.+|+..... +...||||||||||+||+|+|||||+|+||+||||+..+++||++||+
T Consensus 262 ~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~ 341 (356)
T cd01365 262 DRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLR 341 (356)
T ss_pred hhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHH
Confidence 99999999999999999999999886532 246899999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccccccc
Q 003293 159 YANRARNIQNKPIVN 173 (833)
Q Consensus 159 fA~rar~I~n~p~vn 173 (833)
||+++++|+|.|++|
T Consensus 342 fa~~~~~i~~~~~~~ 356 (356)
T cd01365 342 YADRAKKIVNVAVVN 356 (356)
T ss_pred HHHHHhhccCccccC
Confidence 999999999999987
No 13
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=2e-37 Score=343.73 Aligned_cols=157 Identities=38% Similarity=0.571 Sum_probs=138.8
Q ss_pred HHHHHHHhhcCccccCCCCcccCcceeeeEEEEEeeeccCCCCCCCCCCCCCccchhhhceeeeeecCCCccccccCCcc
Q 003293 2 AACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDG 81 (833)
Q Consensus 2 ~~~l~~G~~~R~~~~T~~N~~SSRSHaIfti~i~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~~~g 81 (833)
.++|..|..+|++++|.+|..|||||+||+|+|.+.....+. . .......+..|+|+|||||||||..++++.|
T Consensus 188 ~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~---~---~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g 261 (345)
T cd01368 188 REVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDG---D---VDQDKDQITVSQLSLVDLAGSERTSRTQNTG 261 (345)
T ss_pred HHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCccc---c---cccCCCceEEEEEEEEecccccccccccccc
Confidence 578999999999999999999999999999999986432110 0 0111234667999999999999999999999
Q ss_pred cccchhhhhhhhhhHHHHHHHHhccccCCC-CCccccCCCcchhhhhcccCCCCcceeEEeecCCCCCCHHHHHHHHHHH
Q 003293 82 LRFKEGVHINRGLLALGNVISALGDDKKRK-EGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYA 160 (833)
Q Consensus 82 ~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~-~~~~iPyRdSkLTrLLqdsLgGns~t~mI~~VSP~~~~~~ETlsTL~fA 160 (833)
.+++|+.+||+||++||+||.+|+++.... ...||||||||||+||+|+|||||+|+||+||||+..+++||++||+||
T Consensus 262 ~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa 341 (345)
T cd01368 262 ERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFS 341 (345)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHH
Confidence 999999999999999999999999865433 5689999999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 003293 161 NRAR 164 (833)
Q Consensus 161 ~rar 164 (833)
.+|+
T Consensus 342 ~~a~ 345 (345)
T cd01368 342 AIAQ 345 (345)
T ss_pred HhcC
Confidence 9985
No 14
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-35 Score=337.55 Aligned_cols=163 Identities=37% Similarity=0.574 Sum_probs=150.5
Q ss_pred HHHHHHHhhcCccccCCCCcccCcceeeeEEEEEeeeccCCCCCCCCCCCCCccchhhhceeeeeecCCCccccccCCcc
Q 003293 2 AACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDG 81 (833)
Q Consensus 2 ~~~l~~G~~~R~~~~T~~N~~SSRSHaIfti~i~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~~~g 81 (833)
+.+|..|..+|++++|.+|..|||||+||+|.|.+.... .....+..|.|.|||||||||..+|+++|
T Consensus 284 ~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~------------~~s~~i~vSqlsLvDLAGSERt~rtq~sG 351 (809)
T KOG0247|consen 284 LELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRS------------QDSNQITVSQLSLVDLAGSERTNRTQNSG 351 (809)
T ss_pred HHHHHHHHhhhhhhheeccccccccceeEEEEeeecccc------------cccCceeEEeeeeeecccchhcccccchh
Confidence 468999999999999999999999999999999985321 12345778999999999999999999999
Q ss_pred cccchhhhhhhhhhHHHHHHHHhccccCCCCCccccCCCcchhhhhcccCCCCcceeEEeecCCCCCCHHHHHHHHHHHH
Q 003293 82 LRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYAN 161 (833)
Q Consensus 82 ~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkLTrLLqdsLgGns~t~mI~~VSP~~~~~~ETlsTL~fA~ 161 (833)
.|++||++||.||++||.||.+|..++..+...+|||||||||++++.+|.|+.+.+||+||+|.+.+|+|+++.|+||+
T Consensus 352 ~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEnl~vlkFae 431 (809)
T KOG0247|consen 352 ERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDENLNVLKFAE 431 (809)
T ss_pred HHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHHHHHHHHHH
Confidence 99999999999999999999999998887788999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccccccCCc
Q 003293 162 RARNIQNKPIVNRDP 176 (833)
Q Consensus 162 rar~I~n~p~vn~d~ 176 (833)
.+..|.+.+.++..+
T Consensus 432 iaq~v~v~~~~~~~~ 446 (809)
T KOG0247|consen 432 IAQEVEVARPVIKKQ 446 (809)
T ss_pred hcccccccCcccccC
Confidence 999999988876543
No 15
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=9.6e-36 Score=330.12 Aligned_cols=160 Identities=73% Similarity=1.027 Sum_probs=142.0
Q ss_pred HHHHHHHhhcCccccCCCCcccCcceeeeEEEEEeeeccCCCCCCCCCCCCCccchhhhceeeeeecCCCccccccCCcc
Q 003293 2 AACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDG 81 (833)
Q Consensus 2 ~~~l~~G~~~R~~~~T~~N~~SSRSHaIfti~i~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~~~g 81 (833)
..+|..|..+|++++|.+|..|||||+||+|+|.+.....+.. .+..+.......|+|+||||||||+..+++++|
T Consensus 182 ~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~----~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~ 257 (341)
T cd01372 182 MSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIA----PMSGDDKNSTLTSKFHFVDLAGSERLKKTGATG 257 (341)
T ss_pred HHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccc----cccccCCCceeeEEEEEEECCCCcccccccCch
Confidence 5789999999999999999999999999999999976532110 011112344677999999999999999999999
Q ss_pred cccchhhhhhhhhhHHHHHHHHhccccCCCCCccccCCCcchhhhhcccCCCCcceeEEeecCCCCCCHHHHHHHHHHHH
Q 003293 82 LRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYAN 161 (833)
Q Consensus 82 ~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkLTrLLqdsLgGns~t~mI~~VSP~~~~~~ETlsTL~fA~ 161 (833)
.+++|+..||+||++|++||.+|+.+++ +..|||||||+||+||+|+|||||+|+||+||||+..++.||++||+||+
T Consensus 258 ~~~~e~~~in~sl~aL~~vi~al~~~~~--~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~ 335 (341)
T cd01372 258 DRLKEGISINSGLLALGNVISALGDESK--KGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYAN 335 (341)
T ss_pred hHhHHHHHHhHHHHHHHHHHHHHHhcCC--CCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHH
Confidence 9999999999999999999999998764 35799999999999999999999999999999999999999999999999
Q ss_pred Hhhccc
Q 003293 162 RARNIQ 167 (833)
Q Consensus 162 rar~I~ 167 (833)
+|++|+
T Consensus 336 ~~~~ik 341 (341)
T cd01372 336 RARNIK 341 (341)
T ss_pred HhccCC
Confidence 999986
No 16
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=1.8e-35 Score=326.77 Aligned_cols=150 Identities=61% Similarity=0.822 Sum_probs=137.2
Q ss_pred HHHHHHHhhcCccccCCCCcccCcceeeeEEEEEeeeccCCCCCCCCCCCCCccchhhhceeeeeecCCCccccccCCcc
Q 003293 2 AACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDG 81 (833)
Q Consensus 2 ~~~l~~G~~~R~~~~T~~N~~SSRSHaIfti~i~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~~~g 81 (833)
..+|..|..+|++++|.+|..|||||+||+|+|++..... .....+..|+|+|||||||||..++++.|
T Consensus 184 ~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~-----------~~~~~~~~s~L~~VDLAGsEr~~~~~~~~ 252 (333)
T cd01371 184 DKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGE-----------DGENHIRVGKLNLVDLAGSERQSKTGATG 252 (333)
T ss_pred HHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccC-----------CCCCcEEEEEEEEEECCCCCcccccCCch
Confidence 5789999999999999999999999999999999865421 01233567999999999999999999999
Q ss_pred cccchhhhhhhhhhHHHHHHHHhccccCCCCCccccCCCcchhhhhcccCCCCcceeEEeecCCCCCCHHHHHHHHHHHH
Q 003293 82 LRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYAN 161 (833)
Q Consensus 82 ~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkLTrLLqdsLgGns~t~mI~~VSP~~~~~~ETlsTL~fA~ 161 (833)
.+++|+.+||+||++|++||.+|++++ ..||||||||||+||+|+|||||+|+||+||||...++.||++||+||+
T Consensus 253 ~~~~E~~~iN~sL~~L~~vi~al~~~~----~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eTl~TL~fa~ 328 (333)
T cd01371 253 DRLKEATKINLSLSALGNVISALVDGK----STHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYAN 328 (333)
T ss_pred hhhHhHhhhhhHHHHHHHHHHHHHhCC----CCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHH
Confidence 999999999999999999999998764 3599999999999999999999999999999999999999999999999
Q ss_pred Hhhcc
Q 003293 162 RARNI 166 (833)
Q Consensus 162 rar~I 166 (833)
|||.|
T Consensus 329 r~r~I 333 (333)
T cd01371 329 RAKNI 333 (333)
T ss_pred HhhcC
Confidence 99987
No 17
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=2.4e-35 Score=324.08 Aligned_cols=142 Identities=45% Similarity=0.693 Sum_probs=132.6
Q ss_pred HHHHHHHhhcCccccCCCCcccCcceeeeEEEEEeeeccCCCCCCCCCCCCCccchhhhceeeeeecCCCccccccCCcc
Q 003293 2 AACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDG 81 (833)
Q Consensus 2 ~~~l~~G~~~R~~~~T~~N~~SSRSHaIfti~i~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~~~g 81 (833)
..+|..|..+|.+++|.+|..|||||+||+|+|.+... .....|+|+||||||||+..++++.|
T Consensus 178 ~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~----------------~~~~~s~l~~VDLAGsE~~~~~~~~g 241 (319)
T cd01376 178 EEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS----------------NIQLEGKLNLIDLAGSEDNRRTGNEG 241 (319)
T ss_pred HHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECC----------------CceEEEEEEEEECCCCCcccccCCcc
Confidence 56889999999999999999999999999999988532 11467999999999999999999999
Q ss_pred cccchhhhhhhhhhHHHHHHHHhccccCCCCCccccCCCcchhhhhcccCCCCcceeEEeecCCCCCCHHHHHHHHHHHH
Q 003293 82 LRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYAN 161 (833)
Q Consensus 82 ~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkLTrLLqdsLgGns~t~mI~~VSP~~~~~~ETlsTL~fA~ 161 (833)
.+++|+.+||+||++||+||.+|+.+. .|||||||+||+||+|+|||||+|+||+||||...+++||++||+||+
T Consensus 242 ~~~~e~~~iN~Sl~~L~~vi~aL~~~~-----~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~ 316 (319)
T cd01376 242 IRLKESAAINSSLFVLSKVVDALNKGL-----PRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFAS 316 (319)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHhcCC-----CcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHH
Confidence 999999999999999999999998764 599999999999999999999999999999999999999999999999
Q ss_pred Hhh
Q 003293 162 RAR 164 (833)
Q Consensus 162 rar 164 (833)
||+
T Consensus 317 r~~ 319 (319)
T cd01376 317 RSK 319 (319)
T ss_pred hhC
Confidence 986
No 18
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=4.3e-35 Score=322.85 Aligned_cols=147 Identities=54% Similarity=0.802 Sum_probs=136.3
Q ss_pred HHHHHHHhhcCccccCCCCcccCcceeeeEEEEEeeeccCCCCCCCCCCCCCccchhhhceeeeeecCCCccccccCCcc
Q 003293 2 AACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDG 81 (833)
Q Consensus 2 ~~~l~~G~~~R~~~~T~~N~~SSRSHaIfti~i~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~~~g 81 (833)
..+|..|..+|++++|.+|..|||||+||+|+|.+.+.. ......|+|+||||||||+..++++.|
T Consensus 179 ~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~--------------~~~~~~s~l~~VDLAGsE~~~~~~~~~ 244 (325)
T cd01369 179 LEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVE--------------TGSKKRGKLFLVDLAGSEKVSKTGAEG 244 (325)
T ss_pred HHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecC--------------CCCEEEEEEEEEECCCCCcccccCCcc
Confidence 578999999999999999999999999999999985431 122467999999999999999999999
Q ss_pred cccchhhhhhhhhhHHHHHHHHhccccCCCCCccccCCCcchhhhhcccCCCCcceeEEeecCCCCCCHHHHHHHHHHHH
Q 003293 82 LRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYAN 161 (833)
Q Consensus 82 ~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkLTrLLqdsLgGns~t~mI~~VSP~~~~~~ETlsTL~fA~ 161 (833)
.+++|+..||+||++|++||.+|+++++ .|||||||+||+||+|+|||||+|+||+||||+..+++||++||+||+
T Consensus 245 ~~~~e~~~in~sl~~L~~vi~aL~~~~~----~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a~ 320 (325)
T cd01369 245 QTLEEAKKINKSLSALGNVINALTDGKS----THIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGA 320 (325)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHcCCC----CcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHHH
Confidence 9999999999999999999999998653 599999999999999999999999999999999999999999999999
Q ss_pred Hhhcc
Q 003293 162 RARNI 166 (833)
Q Consensus 162 rar~I 166 (833)
||+.|
T Consensus 321 r~~~i 325 (325)
T cd01369 321 RAKTI 325 (325)
T ss_pred HhhcC
Confidence 99986
No 19
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=3.5e-35 Score=323.05 Aligned_cols=141 Identities=52% Similarity=0.730 Sum_probs=130.8
Q ss_pred HHHHHHHhhcCccccCCCCcccCcceeeeEEEEEeeeccCCCCCCCCCCCCCccchhhhceeeeeecCCCccccccC-Cc
Q 003293 2 AACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTG-SD 80 (833)
Q Consensus 2 ~~~l~~G~~~R~~~~T~~N~~SSRSHaIfti~i~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~-~~ 80 (833)
.++|..|..+|++++|.||..|||||+||+|+|.+... ....|+|+||||||||+...++ .+
T Consensus 181 ~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~-----------------~~~~s~l~~vDLAGsE~~~~~~~~~ 243 (322)
T cd01367 181 LELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL-----------------NKLLGKLSFIDLAGSERGADTSEHD 243 (322)
T ss_pred HHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC-----------------CeeEEEEEEeecCCccccccccccc
Confidence 57899999999999999999999999999999997431 2457899999999999998765 57
Q ss_pred ccccchhhhhhhhhhHHHHHHHHhccccCCCCCccccCCCcchhhhhcccCCCCcceeEEeecCCCCCCHHHHHHHHHHH
Q 003293 81 GLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYA 160 (833)
Q Consensus 81 g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkLTrLLqdsLgGns~t~mI~~VSP~~~~~~ETlsTL~fA 160 (833)
|.+++|+.+||+||++|++||.+|+.++ .||||||||||+||+|+|||||+|+|||||||+..+++||++||+||
T Consensus 244 ~~~~~e~~~IN~SL~~L~~vi~al~~~~-----~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~fa 318 (322)
T cd01367 244 RQTRKEGAEINKSLLALKECIRALASNK-----AHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRYA 318 (322)
T ss_pred hhhHHhHhHHhHHHHHHHHHHHHHhcCC-----CcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHH
Confidence 8999999999999999999999999865 49999999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 003293 161 NRAR 164 (833)
Q Consensus 161 ~rar 164 (833)
+|++
T Consensus 319 ~r~k 322 (322)
T cd01367 319 DRVK 322 (322)
T ss_pred HhhC
Confidence 9985
No 20
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=4.6e-35 Score=323.67 Aligned_cols=147 Identities=48% Similarity=0.643 Sum_probs=134.9
Q ss_pred HHHHHHHhhcCccccCCCCcccCcceeeeEEEEEeeeccCCCCCCCCCCCCCccchhhhceeeeeecCCCccccccCCcc
Q 003293 2 AACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDG 81 (833)
Q Consensus 2 ~~~l~~G~~~R~~~~T~~N~~SSRSHaIfti~i~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~~~g 81 (833)
+.+|..|..+|++++|.+|..|||||+||+|+|.+..... .......|+|+||||||||+..+++++|
T Consensus 188 ~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~------------~~~~~~~s~l~~VDLAGsEr~~~~~~~~ 255 (334)
T cd01375 188 LNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREA------------GSEVVRLSKLNLVDLAGSERVSKTGVSG 255 (334)
T ss_pred HHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCC------------CCCceEEEEEEEEECCCCCccccccCch
Confidence 5689999999999999999999999999999999864321 1234567999999999999999999999
Q ss_pred cccchhhhhhhhhhHHHHHHHHhccccCCCCCccccCCCcchhhhhcccCCCCcceeEEeecCCCCCCHHHHHHHHHHHH
Q 003293 82 LRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYAN 161 (833)
Q Consensus 82 ~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkLTrLLqdsLgGns~t~mI~~VSP~~~~~~ETlsTL~fA~ 161 (833)
..++|+.+||+||++|++||.+|+.+. ..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+
T Consensus 256 ~~~~e~~~iN~SL~~L~~vi~~l~~~~----~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~ 331 (334)
T cd01375 256 QVLKEAKYINKSLSFLEQVINALSEKA----RTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQ 331 (334)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHhCC----CCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHH
Confidence 999999999999999999999999765 3599999999999999999999999999999999999999999999999
Q ss_pred Hhh
Q 003293 162 RAR 164 (833)
Q Consensus 162 rar 164 (833)
|++
T Consensus 332 r~~ 334 (334)
T cd01375 332 RVA 334 (334)
T ss_pred hcC
Confidence 984
No 21
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=1e-34 Score=319.32 Aligned_cols=150 Identities=51% Similarity=0.757 Sum_probs=136.6
Q ss_pred HHHHHHHhhcCccccCCCCcccCcceeeeEEEEEeeeccCCCCCCCCCCCCCccchhhhceeeeeecCCCccccccCCcc
Q 003293 2 AACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDG 81 (833)
Q Consensus 2 ~~~l~~G~~~R~~~~T~~N~~SSRSHaIfti~i~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~~~g 81 (833)
.++|..|..+|++++|.+|..|||||+||+|+|.+.....+ .......|+|+||||||||+..+.+ .|
T Consensus 172 ~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~-----------~~~~~~~s~l~~vDLAGsE~~~~~~-~~ 239 (321)
T cd01374 172 LQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDS-----------ESGTVRVSTLNLIDLAGSERASQTG-AG 239 (321)
T ss_pred HHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCC-----------CCCcEEEEEEEEEECCCCCccccCC-CC
Confidence 57899999999999999999999999999999998643210 1234567999999999999999998 99
Q ss_pred cccchhhhhhhhhhHHHHHHHHhccccCCCCCccccCCCcchhhhhcccCCCCcceeEEeecCCCCCCHHHHHHHHHHHH
Q 003293 82 LRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYAN 161 (833)
Q Consensus 82 ~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkLTrLLqdsLgGns~t~mI~~VSP~~~~~~ETlsTL~fA~ 161 (833)
.+++|+.+||+||++|++||.+|+.+.. ..|||||||+||+||+|+|||||+|+|||||||...+++||++||+||+
T Consensus 240 ~~~~e~~~iN~Sl~~L~~vi~al~~~~~---~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~ 316 (321)
T cd01374 240 ERRKEGSFINKSLLTLGTVISKLSEGKN---SGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFAS 316 (321)
T ss_pred ccccccchhhhHHHHHHHHHHHHHhcCC---CCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHH
Confidence 9999999999999999999999998752 4699999999999999999999999999999999999999999999999
Q ss_pred Hhhcc
Q 003293 162 RARNI 166 (833)
Q Consensus 162 rar~I 166 (833)
++++|
T Consensus 317 r~~~i 321 (321)
T cd01374 317 RAKKV 321 (321)
T ss_pred HHhcC
Confidence 99986
No 22
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.5e-35 Score=323.01 Aligned_cols=149 Identities=46% Similarity=0.666 Sum_probs=135.0
Q ss_pred CHHHHHHHhhcCccccCCCCcccCcceeeeEEEEEeeeccCCCCCCCCCCCCCccchhhhceeeeeecCCCccccc-cCC
Q 003293 1 MAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKR-TGS 79 (833)
Q Consensus 1 ~~~~l~~G~~~R~~~~T~~N~~SSRSHaIfti~i~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~k-t~~ 79 (833)
|+.+++.|++.|++|.|..|+.||||||||.|.+.... +..+++||+||||||+||... +.+
T Consensus 396 Vl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~-----------------~~k~hGKfSlIDLAGnERGaDts~a 458 (676)
T KOG0246|consen 396 VLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG-----------------EFKLHGKFSLIDLAGNERGADTSSA 458 (676)
T ss_pred HHHHHHhcccccccCcccCcccccccceeEeeeeecCC-----------------cceeEeEEEEEEccCCccCCccccc
Confidence 47899999999999999999999999999999997521 134679999999999999655 457
Q ss_pred cccccchhhhhhhhhhHHHHHHHHhccccCCCCCccccCCCcchhhhhcccCCC-CcceeEEeecCCCCCCHHHHHHHHH
Q 003293 80 DGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGG-NSRTVMIACISPADINAEETLNTLK 158 (833)
Q Consensus 80 ~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkLTrLLqdsLgG-ns~t~mI~~VSP~~~~~~ETlsTL~ 158 (833)
+.+.-.||..||+||+||..||.||+.++. |+|||.||||.+|+|||=| ||+|+||+||||+..+++.||||||
T Consensus 459 dRqtRlEGAEINKSLLALKECIRaLg~nk~-----H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLR 533 (676)
T KOG0246|consen 459 DRQTRLEGAEINKSLLALKECIRALGRNKS-----HLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLR 533 (676)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHhcCCCC-----CCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHH
Confidence 888889999999999999999999998764 9999999999999999977 9999999999999999999999999
Q ss_pred HHHHhhccccccc
Q 003293 159 YANRARNIQNKPI 171 (833)
Q Consensus 159 fA~rar~I~n~p~ 171 (833)
||+|++.....+.
T Consensus 534 YAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 534 YADRVKELSVDGG 546 (676)
T ss_pred HHHHHHhhcCCCC
Confidence 9999999866554
No 23
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=6.4e-35 Score=343.03 Aligned_cols=153 Identities=45% Similarity=0.675 Sum_probs=141.1
Q ss_pred CHHHHHHHhhcCccccCCCCcccCcceeeeEEEEEeeeccCCCCCCCCCCCCCccchhhhceeeeeecCCCccccccCCc
Q 003293 1 MAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSD 80 (833)
Q Consensus 1 ~~~~l~~G~~~R~~~~T~~N~~SSRSHaIfti~i~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~~~ 80 (833)
+..+|..|..+|++++|.+|.+|||||+||+|+|...+. .......+.|+|||||||||+.+++++
T Consensus 494 v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~--------------~t~~~~~g~l~LVDLAGSER~~~s~~t 559 (670)
T KOG0239|consen 494 VDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINE--------------LTGIRVTGVLNLVDLAGSERVSKSGVT 559 (670)
T ss_pred HHHHHHHhhccccccccccchhhhccceEEEEEEecccc--------------CcccccccceeEeecccCcccCcCCCc
Confidence 357899999999999999999999999999999976321 234467789999999999999999999
Q ss_pred ccccchhhhhhhhhhHHHHHHHHhccccCCCCCccccCCCcchhhhhcccCCCCcceeEEeecCCCCCCHHHHHHHHHHH
Q 003293 81 GLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYA 160 (833)
Q Consensus 81 g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkLTrLLqdsLgGns~t~mI~~VSP~~~~~~ETlsTL~fA 160 (833)
|+|++|+.+||+||++||+||.||+... .||||||||||+||+|+|||+++|+|+++|||...++.||+++|+||
T Consensus 560 G~RlkE~Q~INkSLS~LgdVi~AL~~k~-----~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA 634 (670)
T KOG0239|consen 560 GERLKEAQNINKSLSALGDVISALASKR-----SHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFA 634 (670)
T ss_pred hhhhHHHHHhchhhhhhHHHHHHHhhcC-----CCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchH
Confidence 9999999999999999999999998743 59999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccccc
Q 003293 161 NRARNIQNKPIV 172 (833)
Q Consensus 161 ~rar~I~n~p~v 172 (833)
.|++.+...+..
T Consensus 635 ~rv~~~~lG~a~ 646 (670)
T KOG0239|consen 635 TRVRSVELGSAR 646 (670)
T ss_pred HHhhceeccccc
Confidence 999999887764
No 24
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=3.3e-34 Score=316.38 Aligned_cols=149 Identities=52% Similarity=0.727 Sum_probs=138.2
Q ss_pred HHHHHHHhhcCccccCCCCcccCcceeeeEEEEEeeeccCCCCCCCCCCCCCccchhhhceeeeeecCCCccccccCCcc
Q 003293 2 AACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDG 81 (833)
Q Consensus 2 ~~~l~~G~~~R~~~~T~~N~~SSRSHaIfti~i~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~~~g 81 (833)
..+|..|..+|.+++|.+|..|||||+||+|+|.+.+.. +.....|+|+||||||||+..++++.|
T Consensus 181 ~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~--------------~~~~~~s~l~~VDLaGsE~~~~~~~~~ 246 (329)
T cd01366 181 TRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ--------------TGEQTRGKLNLVDLAGSERLKKSGATG 246 (329)
T ss_pred HHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC--------------CCcEEEEEEEEEECCCCcccccccccc
Confidence 578999999999999999999999999999999985431 123567999999999999999999999
Q ss_pred cccchhhhhhhhhhHHHHHHHHhccccCCCCCccccCCCcchhhhhcccCCCCcceeEEeecCCCCCCHHHHHHHHHHHH
Q 003293 82 LRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYAN 161 (833)
Q Consensus 82 ~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkLTrLLqdsLgGns~t~mI~~VSP~~~~~~ETlsTL~fA~ 161 (833)
.+++|+..||+||++|++||.+|+.+. .|||||||+||+||+|+|||||+|+||+||||...+++||++||+||+
T Consensus 247 ~~~~e~~~in~Sl~~L~~vl~~l~~~~-----~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~a~ 321 (329)
T cd01366 247 DRLKEAQAINKSLSALGDVISALRSKD-----SHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRFAS 321 (329)
T ss_pred hhhHhHhhhhhHHHHHHHHHHHHhcCC-----CcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHH
Confidence 999999999999999999999998763 599999999999999999999999999999999999999999999999
Q ss_pred Hhhccccc
Q 003293 162 RARNIQNK 169 (833)
Q Consensus 162 rar~I~n~ 169 (833)
+++.|+|.
T Consensus 322 ~~~~i~~~ 329 (329)
T cd01366 322 RVRSVELG 329 (329)
T ss_pred HhhcccCC
Confidence 99999873
No 25
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=7.5e-34 Score=314.20 Aligned_cols=157 Identities=59% Similarity=0.813 Sum_probs=143.9
Q ss_pred HHHHHHHhhcCccccCCCCcccCcceeeeEEEEEeeeccCCCCCCCCCCCCCccchhhhceeeeeecCCCccccccCCcc
Q 003293 2 AACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDG 81 (833)
Q Consensus 2 ~~~l~~G~~~R~~~~T~~N~~SSRSHaIfti~i~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~~~g 81 (833)
..+|..|..+|.+++|.+|..|||||+||+|+|.+.... ........|+|+||||||||+..++++.|
T Consensus 179 ~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~------------~~~~~~~~s~l~~VDLaGse~~~~~~~~~ 246 (335)
T smart00129 179 YNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKN------------SSSGSGKASKLNLVDLAGSERASKTGAEG 246 (335)
T ss_pred HHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecC------------CCCCCEEEEEEEEEECCCCCccccccChh
Confidence 578999999999999999999999999999999975321 11234678999999999999999999999
Q ss_pred cccchhhhhhhhhhHHHHHHHHhccccCCCCCccccCCCcchhhhhcccCCCCcceeEEeecCCCCCCHHHHHHHHHHHH
Q 003293 82 LRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYAN 161 (833)
Q Consensus 82 ~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkLTrLLqdsLgGns~t~mI~~VSP~~~~~~ETlsTL~fA~ 161 (833)
.+++|+..||+||.+|++||.+|+++. +..|||||+|+||+||+|+|||+|+|+||+||||...+++||++||+||+
T Consensus 247 ~~~~e~~~in~sl~~L~~~l~~l~~~~---~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~~a~ 323 (335)
T smart00129 247 DRLKEAGNINKSLSALGNVINALADGQ---KSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTLRFAS 323 (335)
T ss_pred HHHHhhchhhhHHHHHHHHHHHHHhcC---CCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHHHHHH
Confidence 999999999999999999999999853 25699999999999999999999999999999999999999999999999
Q ss_pred Hhhccccccccc
Q 003293 162 RARNIQNKPIVN 173 (833)
Q Consensus 162 rar~I~n~p~vn 173 (833)
++++|+|+|++|
T Consensus 324 ~~~~i~~~p~~~ 335 (335)
T smart00129 324 RAKEIKNKAIVN 335 (335)
T ss_pred HHhhcccCCCcC
Confidence 999999999875
No 26
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=1.5e-33 Score=311.68 Aligned_cols=152 Identities=55% Similarity=0.816 Sum_probs=135.7
Q ss_pred HHHHHHHhhcCccccCCCCcccCcceeeeEEEEEeeeccCCCCCCCCCCCCCccchhhhceeeeeecCCCccccccCC-c
Q 003293 2 AACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGS-D 80 (833)
Q Consensus 2 ~~~l~~G~~~R~~~~T~~N~~SSRSHaIfti~i~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~~-~ 80 (833)
..+|..|..+|++++|.+|..|||||+||+|+|.+...... ........|+|+||||||||+..++++ .
T Consensus 183 ~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~----------~~~~~~~~s~l~~vDLaGsE~~~~~~~~~ 252 (335)
T PF00225_consen 183 LQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPS----------DDEESVKHSRLTFVDLAGSERLKKSGASD 252 (335)
T ss_dssp HHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTT----------TEEEEEEEEEEEEEEEEESTGGCGCSSSS
T ss_pred cccccchhhcccccccccccccccccccccccccccccccc----------ccccceeecceeeeecccccccccccccc
Confidence 57899999999999999999999999999999999754211 011125779999999999999999886 4
Q ss_pred ccccchhhhhhhhhhHHHHHHHHhccccCCCCCccccCCCcchhhhhcccCCCCcceeEEeecCCCCCCHHHHHHHHHHH
Q 003293 81 GLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYA 160 (833)
Q Consensus 81 g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkLTrLLqdsLgGns~t~mI~~VSP~~~~~~ETlsTL~fA 160 (833)
+.+++|+..||+||.+|++||.+|+.+ ....||||||||||+||+|+|||||+|+||+||||...+++||++||+||
T Consensus 253 ~~~~~e~~~in~Sl~~L~~vi~~L~~~---~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa 329 (335)
T PF00225_consen 253 GQRLKESSNINKSLSALGNVIRALAQG---SKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYEETLSTLRFA 329 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCT---TSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHHHHHHHHHHH
T ss_pred cccccccceecchhhhhhhhHhhhhcc---ccchhhhhhcccccceecccccccccceeEEEcCCccccHHHHHHHHHHH
Confidence 888999999999999999999999987 23569999999999999999999999999999999999999999999999
Q ss_pred HHhhcc
Q 003293 161 NRARNI 166 (833)
Q Consensus 161 ~rar~I 166 (833)
+++++|
T Consensus 330 ~~~~~I 335 (335)
T PF00225_consen 330 SRAREI 335 (335)
T ss_dssp HHHTTE
T ss_pred HHHcCC
Confidence 999987
No 27
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=99.97 E-value=1.9e-32 Score=278.76 Aligned_cols=128 Identities=53% Similarity=0.823 Sum_probs=116.5
Q ss_pred HHHHHHHhhcCccccCCCCcccCcceeeeEEEEEeeeccCCCCCCCCCCCCCccchhhhceeeeeecCCCccccccCCcc
Q 003293 2 AACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDG 81 (833)
Q Consensus 2 ~~~l~~G~~~R~~~~T~~N~~SSRSHaIfti~i~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~~~g 81 (833)
.++|..|..+|++++|.+|..|||||+||+|+|.+.....+ .......|+|+||||||||+..++++.+
T Consensus 59 ~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~-----------~~~~~~~s~l~lVDLAGsE~~~~~~~~~ 127 (186)
T cd01363 59 IDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALAS-----------ATEQPKVGKINLVDLAGSERIDFSGAEG 127 (186)
T ss_pred HHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCC-----------CccceeeeeEEEEEccccccccccCCch
Confidence 57899999999999999999999999999999998654211 1233567999999999999999999999
Q ss_pred cccchhhhhhhhhhHHHHHHHHhccccCCCCCccccCCCcchhhhhcccCCCCcceeEEeecCC
Q 003293 82 LRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISP 145 (833)
Q Consensus 82 ~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkLTrLLqdsLgGns~t~mI~~VSP 145 (833)
.+++|+..||+||++|++||.+|+++. .||||||||||+||+|+|||||+|+||+||||
T Consensus 128 ~~~~e~~~in~sl~~L~~~i~~l~~~~-----~~vpyr~SkLT~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 128 SRLTETANINKSLSTLGNVISALAERD-----SHVPYRESKLTRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHHhcCC-----CCCCCcccHHHHHHHHhcCCCCeEEEEEEeCc
Confidence 999999999999999999999998764 49999999999999999999999999999999
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=99.97 E-value=7.8e-32 Score=315.19 Aligned_cols=157 Identities=57% Similarity=0.815 Sum_probs=144.4
Q ss_pred CHHHHHHHhhcCccccCCCCcccCcceeeeEEEEEeeeccCCCCCCCCCCCCCccchhhhceeeeeecCCCccccccCCc
Q 003293 1 MAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSD 80 (833)
Q Consensus 1 ~~~~l~~G~~~R~~~~T~~N~~SSRSHaIfti~i~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~~~ 80 (833)
++.+|..|..+|++++|.+|..|||||+||+|++.+..+..+ ....++|+||||||||++..+++.
T Consensus 188 ~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~--------------~~~~~~l~lvDLagSE~~~~~~~~ 253 (568)
T COG5059 188 ILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSG--------------TSETSKLSLVDLAGSERAARTGNR 253 (568)
T ss_pred HHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCcc--------------ceecceEEEEeeccccccchhhcc
Confidence 467899999999999999999999999999999998654321 112279999999999999999999
Q ss_pred ccccchhhhhhhhhhHHHHHHHHhccccCCCCCccccCCCcchhhhhcccCCCCcceeEEeecCCCCCCHHHHHHHHHHH
Q 003293 81 GLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYA 160 (833)
Q Consensus 81 g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkLTrLLqdsLgGns~t~mI~~VSP~~~~~~ETlsTL~fA 160 (833)
+.+++||..||+||++||+||++|.+.+ +..|||||+|||||+|+|+|||+|+|+|||||+|...+++||.+||+||
T Consensus 254 ~~r~~E~~~iN~sLl~Lg~vI~~L~~~~---~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a 330 (568)
T COG5059 254 GTRLKEGASINKSLLTLGNVINALGDKK---KSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFA 330 (568)
T ss_pred cchhhhhhhhHhhHHHHHHHHHHHhccc---cCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHH
Confidence 9999999999999999999999999853 3579999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccccccC
Q 003293 161 NRARNIQNKPIVNR 174 (833)
Q Consensus 161 ~rar~I~n~p~vn~ 174 (833)
++|+.|+|++++|.
T Consensus 331 ~rak~I~~~~~~~~ 344 (568)
T COG5059 331 SRAKSIKNKIQVNS 344 (568)
T ss_pred HHHhhcCCcccccC
Confidence 99999999999996
No 29
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=99.97 E-value=1.8e-31 Score=294.21 Aligned_cols=148 Identities=59% Similarity=0.825 Sum_probs=135.1
Q ss_pred HHHHHHHhhcCccccCCCCcccCcceeeeEEEEEeeeccCCCCCCCCCCCCCccchhhhceeeeeecCCCccccccCCcc
Q 003293 2 AACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDG 81 (833)
Q Consensus 2 ~~~l~~G~~~R~~~~T~~N~~SSRSHaIfti~i~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~~~g 81 (833)
..+|..|..+|.+++|.+|..|||||+||+|+|.+...... ......|+|+||||||||+..+++..|
T Consensus 181 ~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~------------~~~~~~s~l~~VDLaGse~~~~~~~~~ 248 (328)
T cd00106 181 LSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTND------------GRSIKSSKLNLVDLAGSERAKKTGAEG 248 (328)
T ss_pred HHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCC------------CccEEEEEEEEEECCCCCcccccCCch
Confidence 57899999999999999999999999999999998643210 113567999999999999999999999
Q ss_pred cccchhhhhhhhhhHHHHHHHHhccccCCCCCccccCCCcchhhhhcccCCCCcceeEEeecCCCCCCHHHHHHHHHHHH
Q 003293 82 LRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYAN 161 (833)
Q Consensus 82 ~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~iPyRdSkLTrLLqdsLgGns~t~mI~~VSP~~~~~~ETlsTL~fA~ 161 (833)
.++.|+..||+||.+|++||.+|+.+.. ..|||||+||||+||+|+|||+|+|+||+||||...+++||++||+||+
T Consensus 249 ~~~~e~~~in~sl~~L~~vl~~l~~~~~---~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~ 325 (328)
T cd00106 249 DRLKEAKNINKSLSALGNVISALSSGQK---KKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFAS 325 (328)
T ss_pred hhhHhHHhhhhhHHHHHHHHHHHHhcCC---CCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHH
Confidence 9999999999999999999999998752 3699999999999999999999999999999999999999999999999
Q ss_pred Hhh
Q 003293 162 RAR 164 (833)
Q Consensus 162 rar 164 (833)
||+
T Consensus 326 r~~ 328 (328)
T cd00106 326 RAK 328 (328)
T ss_pred hcC
Confidence 985
No 30
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.57 E-value=0.0041 Score=76.90 Aligned_cols=105 Identities=12% Similarity=-0.020 Sum_probs=83.8
Q ss_pred HHHHhhchHHHHHHHHHhHHHhhhhhc---cccccccccccCHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 003293 600 ENMLSISSNSLVAMASQLSEAEERDRL---FTNRGRWNQLRSMADAKNLLQYMFNSLADARCQLWEKDIEIKEMKEQLKE 676 (833)
Q Consensus 600 e~~~~~~~~~l~~l~~kl~e~ee~~r~---~~~~~rw~~irs~~eAk~~l~~L~~~~~~~r~~~~~~~~el~e~k~~~~~ 676 (833)
.++...++++++.+..+|.+..+.+++ ++....|...++..........|..++.....+..-.+.+|+ .+++...
T Consensus 709 lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLs-sq~~~~~ 787 (1317)
T KOG0612|consen 709 LSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELK-SQEQEVN 787 (1317)
T ss_pred hcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhh-hHHHhhc
Confidence 456667788899999999998888765 333456999999999999999999999999999999999999 7777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003293 677 LVGLLRQSEVRRKEVEEELKLREQAVAITLARS 709 (833)
Q Consensus 677 l~~~l~~~e~q~~~l~~~~~~~~~~~~~~l~~~ 709 (833)
. +-+|.|++.+.+.+......+-.-.++.
T Consensus 788 t----~~~Ekq~~~~~~~l~~~K~~~e~~~~q~ 816 (1317)
T KOG0612|consen 788 T----KMLEKQLKKLLDELAELKKQLEEENAQL 816 (1317)
T ss_pred c----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6 6777888887777776655555544444
No 31
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.16 E-value=0.088 Score=69.75 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=21.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003293 535 VNVHEVRFDYEKQSQVRAALAEELAVLKQV 564 (833)
Q Consensus 535 ~~~~e~~~~le~l~~~R~~L~~el~~Lk~~ 564 (833)
.++.++...++.+....+.+..+-..|...
T Consensus 1189 ~~~~el~~qle~l~~~k~~lekek~~lq~e 1218 (1930)
T KOG0161|consen 1189 DSLAELQEQLEQLQKDKAKLEKEKSDLQRE 1218 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777888877777777777766543
No 32
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.16 E-value=0.035 Score=64.97 Aligned_cols=52 Identities=25% Similarity=0.217 Sum_probs=39.8
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 654 ADARCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAIT 705 (833)
Q Consensus 654 ~~~r~~~~~~~~el~e~k~~~~~l~~~l~~~e~q~~~l~~~~~~~~~~~~~~ 705 (833)
...|+++.+...+|.|++..+.-++..=-+.-..+|+|.+-++.++..+-++
T Consensus 406 D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 406 DCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556788999999999999776666655566777888888888887776655
No 33
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.96 E-value=0.2 Score=66.50 Aligned_cols=88 Identities=33% Similarity=0.446 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhccCc
Q 003293 299 MDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAEL--------------EDEKRTVQKERDHLLTEIENLASNS 364 (833)
Q Consensus 299 l~~EL~eLnkqLe~KE~e~k~~~~~~~~~lkq~yekKi~eL--------------E~ei~~LqkErdeLl~eL~~~~~~~ 364 (833)
...++.+|.+.++......... ...+++.+...+.+| +.+...++.+.+++..++......
T Consensus 1158 ~e~e~~~l~~~leee~~~~e~~----~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~- 1232 (1930)
T KOG0161|consen 1158 REAEVQKLRRDLEEETLDHEAQ----IEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSE- 1232 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-
Confidence 3455566666555554332211 123344444444444 444445555555555555544321
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 365 DGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQ 398 (833)
Q Consensus 365 ~~~~~KL~e~~ekkLqeLE~ei~~LkkK~~~q~~ 398 (833)
+...+++.+.+|.++.+++.+..+..+
T Consensus 1233 -------k~~~e~~~k~~E~~l~elq~k~~~~~~ 1259 (1930)
T KOG0161|consen 1233 -------KKDLEKKDKKLEAQLSELQLKLDEQER 1259 (1930)
T ss_pred -------hccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333334455555555544444333
No 34
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.88 E-value=0.25 Score=64.99 Aligned_cols=76 Identities=20% Similarity=0.382 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHH
Q 003293 297 NSMDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHA 376 (833)
Q Consensus 297 ~~l~~EL~eLnkqLe~KE~e~k~~~~~~~~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~e 376 (833)
..+..++..+.++|+..+.++...... ..+.+++.++..++.+.+.+...+... ....+...
T Consensus 795 ~r~~~ei~~l~~qie~l~~~l~~~~~~----------~s~~ele~ei~~~~~el~~l~~~~e~l--------~~e~e~~~ 856 (1311)
T TIGR00606 795 ERFQMELKDVERKIAQQAAKLQGSDLD----------RTVQQVNQEKQEKQHELDTVVSKIELN--------RKLIQDQQ 856 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccc----------CCHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Confidence 345777888888888777776644321 245556666666666666665554433 11222344
Q ss_pred HHHHHHHHHHHHHH
Q 003293 377 HKLKSLEAQILDLK 390 (833)
Q Consensus 377 kkLqeLE~ei~~Lk 390 (833)
..++.|+.++..++
T Consensus 857 ~eI~~Lq~ki~el~ 870 (1311)
T TIGR00606 857 EQIQHLKSKTNELK 870 (1311)
T ss_pred HHHHHHHHHHHHHH
Confidence 55566655555554
No 35
>PRK02224 chromosome segregation protein; Provisional
Probab=97.71 E-value=0.32 Score=61.33 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003293 647 QYMFNSLADARCQLWEKDIEIKEMKEQLKELVGLLRQSEV 686 (833)
Q Consensus 647 ~~L~~~~~~~r~~~~~~~~el~e~k~~~~~l~~~l~~~e~ 686 (833)
..+...+.........+...+.++++.+..+...+...+.
T Consensus 649 e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~ 688 (880)
T PRK02224 649 EEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVEN 688 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555544555555555555544443333
No 36
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.71 E-value=0.099 Score=57.68 Aligned_cols=229 Identities=19% Similarity=0.283 Sum_probs=128.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 324 DTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQK 403 (833)
Q Consensus 324 ~~~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLqeLE~ei~~LkkK~~~q~~llk~K 403 (833)
....++..|+..|..|...|..+..++..+..++.++....++...++.+ -......++.++..|++-... ....+
T Consensus 44 ~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~-e~~~~~~le~el~~lrk~ld~---~~~~r 119 (312)
T PF00038_consen 44 EVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEE-ELAERKDLEEELESLRKDLDE---ETLAR 119 (312)
T ss_dssp --HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred cCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhhhh---hhhhH
Confidence 34568999999999999999999999999988887764333333344433 245566778888888755443 23344
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH--Hh
Q 003293 404 QKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAE-----QFR-QWKASREKELLQLRKEGRRNEYERHKLQALNQRQ--KL 475 (833)
Q Consensus 404 ~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~e-----k~r-~~k~~~eKEi~qLKke~rK~~~e~~kLe~~~~kQ--~~ 475 (833)
...+.++..|+.||..++..+.+-+..++.... ..+ .+......-|..++ .+|+-. +...++ ..
T Consensus 120 ~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR-----~~ye~~---~~~~~~e~e~ 191 (312)
T PF00038_consen 120 VDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIR-----AQYEEI---AQKNREELEE 191 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHH-----HHHHHH---HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHH-----HHHHHH---Hhhhhhhhhh
Confidence 456667778888888888777776666655442 000 11111111111122 112100 000011 11
Q ss_pred HhhhhhHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003293 476 VLQRKTEEAAMATKRLKELLESRKSSARENSAVTNGNLTNGQSNEKSFQRWLDHELEVMVNVHEVRFDYEKQSQVRAALA 555 (833)
Q Consensus 476 VLkRKtEEa~aa~kRLK~~le~rK~~~r~~~~~~~~~~~~~~~~~~~~~~Wle~e~ev~~~~~e~~~~le~l~~~R~~L~ 555 (833)
.++.++++......+-...+ ..-=+.-.++...+..++..++.+....+.|.
T Consensus 192 ~y~~k~~~l~~~~~~~~~~~----------------------------~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le 243 (312)
T PF00038_consen 192 WYQSKLEELRQQSEKSSEEL----------------------------ESAKEELKELRRQIQSLQAELESLRAKNASLE 243 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccccccccccccc----------------------------chhHhHHHHHHhhhhHhhhhhhccccchhhhh
Confidence 24444444333222211111 11113334556678888888888888899999
Q ss_pred HHHHHHHhhhHhhhcCCCCCCCCCcccccccCChhhHHHHHHHHHHHHhhchHHHHH
Q 003293 556 EELAVLKQVDEFASKGLSPPRGKNGFARVSSMSPNARMARISSLENMLSISSNSLVA 612 (833)
Q Consensus 556 ~el~~Lk~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~aqI~~Le~~~~~~~~~l~~ 612 (833)
..+..|........ ....+.|..++..+......|..
T Consensus 244 ~~l~~le~~~~~~~--------------------~~~~~~i~~le~el~~l~~~~~~ 280 (312)
T PF00038_consen 244 RQLRELEQRLDEER--------------------EEYQAEIAELEEELAELREEMAR 280 (312)
T ss_dssp HHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH--------------------HHHHHhhhccchhHHHHHHHHHH
Confidence 99888876533211 23567777777777665554433
No 37
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.47 E-value=0.42 Score=56.29 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=27.5
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 658 CQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQ 700 (833)
Q Consensus 658 ~~~~~~~~el~e~k~~~~~l~~~l~~~e~q~~~l~~~~~~~~~ 700 (833)
..+.+++.+|..|++.|..+...|+.+=--...|..++..|..
T Consensus 342 ~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRk 384 (546)
T KOG0977|consen 342 QALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYRK 384 (546)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHH
Confidence 3566788888888888888776665443333345555555543
No 38
>PRK03918 chromosome segregation protein; Provisional
Probab=97.47 E-value=0.65 Score=58.52 Aligned_cols=30 Identities=13% Similarity=0.315 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 330 QHFGKKIAELEDEKRTVQKERDHLLTEIEN 359 (833)
Q Consensus 330 q~yekKi~eLE~ei~~LqkErdeLl~eL~~ 359 (833)
..|.+.+..++.++..++.+...+...+..
T Consensus 303 ~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 332 (880)
T PRK03918 303 EEYLDELREIEKRLSRLEEEINGIEERIKE 332 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666555555443
No 39
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.39 E-value=0.68 Score=57.07 Aligned_cols=300 Identities=20% Similarity=0.232 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003293 330 QHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEA 409 (833)
Q Consensus 330 q~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLqeLE~ei~~LkkK~~~q~~llk~K~k~E~~ 409 (833)
..|...+.+|.+..+.|..++.-|..+|+.+.+.++. -.+|++|..++++..... -..--...+
T Consensus 260 ~fykdRveelkedN~vLleekeMLeeQLq~lrarse~-------------~tleseiiqlkqkl~dm~---~erdtdr~k 323 (1195)
T KOG4643|consen 260 DFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-------------ATLESEIIQLKQKLDDMR---SERDTDRHK 323 (1195)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc-------------CChHHHHHHHHHHHHHHH---HhhhhHHHH
Confidence 3577889999999999999999888888765332211 356667777766655421 111222345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHhhhhhHHHHH
Q 003293 410 AKRLQDEIQFIKAQKVQLQHRIKQEAE---QFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAM 486 (833)
Q Consensus 410 ik~L~~EIq~mK~qKv~L~kkmkeE~e---k~r~~k~~~eKEi~qLKke~rK~~~e~~kLe~~~~kQ~~VLkRKtEEa~a 486 (833)
+..|..|+..|.-++.+|--+|--... .-........+|..+|.. +|-...+ .
T Consensus 324 teeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts-~ralkll-----------------------L 379 (1195)
T KOG4643|consen 324 TEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTS-DRALKLL-----------------------L 379 (1195)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhh-HHHHHHH-----------------------H
Confidence 567888888888888887766643222 112233444455555554 1111111 1
Q ss_pred HHHHHHHHHHhhhhhccccccccCCCCCCCCcchHHHHHHHH--H-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003293 487 ATKRLKELLESRKSSARENSAVTNGNLTNGQSNEKSFQRWLD--H-ELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQ 563 (833)
Q Consensus 487 a~kRLK~~le~rK~~~r~~~~~~~~~~~~~~~~~~~~~~Wle--~-e~ev~~~~~e~~~~le~l~~~R~~L~~el~~Lk~ 563 (833)
-++|+=..++-++++.-. ..+.+-++ . ...+.+.+..++..+.++.+.-+.+......|..
T Consensus 380 Enrrlt~tleelqsss~E----------------e~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~ 443 (1195)
T KOG4643|consen 380 ENRRLTGTLEELQSSSYE----------------ELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQF 443 (1195)
T ss_pred HhHHHHHHHHHHhhhhHH----------------HHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122332333322222100 00111111 1 1224455566666666666666666655555544
Q ss_pred hhHhhhcCCCCCCCCCcccccccCChhhHHHHHHHHHHHHhhchHHHHHHHHHhHHHhhhhhccccccccccc-cCHHHH
Q 003293 564 VDEFASKGLSPPRGKNGFARVSSMSPNARMARISSLENMLSISSNSLVAMASQLSEAEERDRLFTNRGRWNQL-RSMADA 642 (833)
Q Consensus 564 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~aqI~~Le~~~~~~~~~l~~l~~kl~e~ee~~r~~~~~~rw~~i-rs~~eA 642 (833)
.++.......- ...+++ + ++.+....+++..++.++...-+.+++ +..+. .++.++
T Consensus 444 E~ekl~~e~~t--------~~~s~~---r-------q~~e~e~~~q~ls~~~Q~~~et~el~~-----~iknlnk~L~~r 500 (1195)
T KOG4643|consen 444 ELEKLLEETST--------VTRSLS---R-------QSLENEELDQLLSLQDQLEAETEELLN-----QIKNLNKSLNNR 500 (1195)
T ss_pred HHHHHHHHHHH--------HHHhHH---H-------HHHHhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 43332210000 000000 1 122222233555555555554443321 11111 244555
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhh
Q 003293 643 KNLLQYMFNSLADARCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQ--AVAITLAR 708 (833)
Q Consensus 643 k~~l~~L~~~~~~~r~~~~~~~~el~e~k~~~~~l~~~l~~~e~q~~~l~~~~~~~~~--~~~~~l~~ 708 (833)
.-.+..|.........+....+..++.+..++..|+.++-..|..+..|..++..+.+ ...++|-.
T Consensus 501 ~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq 568 (1195)
T KOG4643|consen 501 DLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQ 568 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5666666666666777777778888888888888888888888888888777777666 44444433
No 40
>PRK02224 chromosome segregation protein; Provisional
Probab=97.39 E-value=0.8 Score=57.80 Aligned_cols=46 Identities=11% Similarity=0.047 Sum_probs=31.9
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 660 LWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAIT 705 (833)
Q Consensus 660 ~~~~~~el~e~k~~~~~l~~~l~~~e~q~~~l~~~~~~~~~~~~~~ 705 (833)
..+.+.+|.++...+..++..+...+....++..++..+.+.+.-+
T Consensus 594 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 594 IRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666777777777777777777777777777777777766664
No 41
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.35 E-value=0.13 Score=62.84 Aligned_cols=45 Identities=24% Similarity=0.223 Sum_probs=26.5
Q ss_pred hHHHHHHHHHhHHHhhhhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Q 003293 607 SNSLVAMASQLSEAEERDRLFTNRGRWNQLRSMADAKNLLQYMFNSLADARCQLWEKDIE 666 (833)
Q Consensus 607 ~~~l~~l~~kl~e~ee~~r~~~~~~rw~~irs~~eAk~~l~~L~~~~~~~r~~~~~~~~e 666 (833)
-..|.+|+.|=.-.|+.+. ..+| +-..||+++-++|+++-..+..
T Consensus 593 ~~aL~amqdk~~~LE~sLs---aEtr------------iKldLfsaLg~akrq~ei~~~~ 637 (697)
T PF09726_consen 593 MSALSAMQDKNQHLENSLS---AETR------------IKLDLFSALGDAKRQLEIAQGQ 637 (697)
T ss_pred HHHHHHHHHHHHHHHHhhh---HHHH------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777776666666542 1111 2356788888777776664443
No 42
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=97.34 E-value=0.0017 Score=54.27 Aligned_cols=57 Identities=16% Similarity=0.171 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 648 YMFNSLADARCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAI 704 (833)
Q Consensus 648 ~L~~~~~~~r~~~~~~~~el~e~k~~~~~l~~~l~~~e~q~~~l~~~~~~~~~~~~~ 704 (833)
.|++++.+++++++.+..+|+.+++.+..++++|++++.++.+|..++..+++++--
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999988743
No 43
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.29 E-value=0.63 Score=54.49 Aligned_cols=147 Identities=12% Similarity=0.097 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhcCCCCCCCCCcccccccCChhhHHHHHHHHHHH
Q 003293 523 FQRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQVDEFASKGLSPPRGKNGFARVSSMSPNARMARISSLENM 602 (833)
Q Consensus 523 ~~~Wle~e~ev~~~~~e~~~~le~l~~~R~~L~~el~~Lk~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~aqI~~Le~~ 602 (833)
+..|++ ++.-.++++...+..|.+.+..++..+..+.+......-....... -+........+.|.+.=.+++..
T Consensus 423 l~el~~---ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~--~~~~~k~e~eee~~k~~~E~e~l 497 (581)
T KOG0995|consen 423 LKELLD---EISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAES--KYELKKEEAEEEWKKCRKEIEKL 497 (581)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554 3455667777777777777766666666554432211100000000 00011112234455554444443
Q ss_pred HhhchHHHHHHHHHhHHHhhhhhccccccccccccCHHHHHHHH-HHHHHHHHHHHHHHhHHhHHHHHHHHHHH
Q 003293 603 LSISSNSLVAMASQLSEAEERDRLFTNRGRWNQLRSMADAKNLL-QYMFNSLADARCQLWEKDIEIKEMKEQLK 675 (833)
Q Consensus 603 ~~~~~~~l~~l~~kl~e~ee~~r~~~~~~rw~~irs~~eAk~~l-~~L~~~~~~~r~~~~~~~~el~e~k~~~~ 675 (833)
...-..---.|-++|.++++...+... --=..+.+..+-+..+ +.||..+....-.+...+..|.+++..+.
T Consensus 498 e~~l~~l~l~~~~~m~~a~~~v~s~e~-el~~~~~~~~eer~ki~~ql~~~i~~i~~~k~~iqs~le~~k~~~~ 570 (581)
T KOG0995|consen 498 EEELLNLKLVLNTSMKEAEELVKSIEL-ELDRMVATGEEERQKIAKQLFAVIDQISDFKVSIQSSLENLKADLH 570 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222223344566666654422110 0013445666666666 77777777777777777777777766543
No 44
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.25 E-value=1.3 Score=57.27 Aligned_cols=12 Identities=25% Similarity=0.598 Sum_probs=7.5
Q ss_pred CCCcchhhhhcc
Q 003293 118 YRDSKLTRLLQD 129 (833)
Q Consensus 118 yRdSkLTrLLqd 129 (833)
+|.+++..++.+
T Consensus 55 ~r~~~~~~~i~~ 66 (1164)
T TIGR02169 55 MRAERLSDLISN 66 (1164)
T ss_pred hhhhhHHHhhcc
Confidence 466666666665
No 45
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.24 E-value=1.4 Score=57.52 Aligned_cols=16 Identities=19% Similarity=0.019 Sum_probs=11.5
Q ss_pred hhccCCCccceecccc
Q 003293 776 AALGQGGKLWRWKRSH 791 (833)
Q Consensus 776 ~~~~~~~~~~~~~~~~ 791 (833)
-+|--.|.+|.|..+-
T Consensus 637 riVTl~G~~~~~~G~~ 652 (1163)
T COG1196 637 RIVTLDGDLVEPSGSI 652 (1163)
T ss_pred eEEecCCcEEeCCeee
Confidence 4566788999887653
No 46
>PRK11637 AmiB activator; Provisional
Probab=97.07 E-value=0.61 Score=54.03 Aligned_cols=33 Identities=18% Similarity=0.382 Sum_probs=17.2
Q ss_pred HhhhccCCCccceeccccccceeece-ecccCcchhhHhhh
Q 003293 774 KLAALGQGGKLWRWKRSHHQWLLQFK-WKWQKPWRLSEWIR 813 (833)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 813 (833)
.++.+|.+|- ....| |+|. |+.-+|-.-..|++
T Consensus 394 ~ig~~g~~g~----~~~~~---l~fei~~~~~~vnP~~~l~ 427 (428)
T PRK11637 394 PIALVGSSGG----QGRPS---LYFEIRRQGQAVNPQPWLG 427 (428)
T ss_pred eEEeecCCCC----CCCCe---EEEEEEECCEEeChHHHhC
Confidence 3556777762 22122 4444 34445666667774
No 47
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.98 E-value=2.2 Score=55.09 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 665 IEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLRE 699 (833)
Q Consensus 665 ~el~e~k~~~~~l~~~l~~~e~q~~~l~~~~~~~~ 699 (833)
.++..+.+++..|.....+++.-..+|....+.+.
T Consensus 993 er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f 1027 (1179)
T TIGR02168 993 EEYEELKERYDFLTAQKEDLTEAKETLEEAIEEID 1027 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555544
No 48
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.96 E-value=1.7 Score=53.63 Aligned_cols=229 Identities=17% Similarity=0.245 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCC------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhH
Q 003293 297 NSMDKELNELNRRLEEKESEMKLVGGS------DTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQK 370 (833)
Q Consensus 297 ~~l~~EL~eLnkqLe~KE~e~k~~~~~------~~~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~K 370 (833)
.+++..|..++..|...|++-+.+... .-..--.-|++.+.+...++..++..+-.....=.+... .-+....
T Consensus 187 ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~-~~~~~~d 265 (1200)
T KOG0964|consen 187 EKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYID-ALDKVED 265 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHH-HHHHHHH
Confidence 345566666666665555443332211 111122346666666666666665555333222111100 0001111
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 371 LQDVHAHKLKSLEAQILDLKK-KQ---ENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASRE 446 (833)
Q Consensus 371 L~e~~ekkLqeLE~ei~~Lkk-K~---~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~e 446 (833)
-.+.....+.+|+..+.-|.. |+ ....++.+.|.+.+-+++.|+.+|..-++++....+.+.
T Consensus 266 ~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~-------------- 331 (1200)
T KOG0964|consen 266 ESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQ-------------- 331 (1200)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHH--------------
Confidence 122344556666666666653 11 123455666777777777777777766666655444432
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCCCc-chHHHHH
Q 003293 447 KELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESRKSSARENSAVTNGNLTNGQS-NEKSFQR 525 (833)
Q Consensus 447 KEi~qLKke~rK~~~e~~kLe~~~~kQ~~VLkRKtEEa~aa~kRLK~~le~rK~~~r~~~~~~~~~~~~~~~-~~~~~~~ 525 (833)
.++.+-...+.++.+++..++...--=.+-..-.+.+..+.++++.++ |+++|. +....+.
T Consensus 332 ----~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kq--------------gr~sqFssk~eRDk 393 (1200)
T KOG0964|consen 332 ----KVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQ--------------GRYSQFSSKEERDK 393 (1200)
T ss_pred ----HHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh--------------ccccccCcHHHHHH
Confidence 234444444445555444433221111111111223344444555432 333443 3345799
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003293 526 WLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQV 564 (833)
Q Consensus 526 Wle~e~ev~~~~~e~~~~le~l~~~R~~L~~el~~Lk~~ 564 (833)
||..+++-. ...+....+.+..|..++..++..
T Consensus 394 wir~ei~~l------~~~i~~~ke~e~~lq~e~~~~e~~ 426 (1200)
T KOG0964|consen 394 WIRSEIEKL------KRGINDTKEQENILQKEIEDLESE 426 (1200)
T ss_pred HHHHHHHHH------HHHHhhhhhHHHHHHHHHHHHHHH
Confidence 999987654 445555666677777777777553
No 49
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.77 E-value=3.1 Score=53.73 Aligned_cols=11 Identities=18% Similarity=0.389 Sum_probs=5.0
Q ss_pred CCCcchhhhhc
Q 003293 118 YRDSKLTRLLQ 128 (833)
Q Consensus 118 yRdSkLTrLLq 128 (833)
+|.+++..++.
T Consensus 55 ~r~~~~~~~i~ 65 (1179)
T TIGR02168 55 LRGGKMEDVIF 65 (1179)
T ss_pred hhhccchhhhc
Confidence 34444444443
No 50
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.72 E-value=3.4 Score=53.44 Aligned_cols=14 Identities=14% Similarity=0.221 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 003293 673 QLKELVGLLRQSEV 686 (833)
Q Consensus 673 ~~~~l~~~l~~~e~ 686 (833)
....+...+...+.
T Consensus 1001 ~~~~l~~~i~~l~~ 1014 (1164)
T TIGR02169 1001 ERKAILERIEEYEK 1014 (1164)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 51
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.68 E-value=4.2 Score=54.01 Aligned_cols=90 Identities=21% Similarity=0.245 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHhHHHhhhhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Q 003293 592 RMARISSLENMLSISSNSLVAMASQLSEAEERDRLFTNRGRWNQLRSMADAKNLLQYMFNSLADARCQLWEKDIEIKEMK 671 (833)
Q Consensus 592 ~~aqI~~Le~~~~~~~~~l~~l~~kl~e~ee~~r~~~~~~rw~~irs~~eAk~~l~~L~~~~~~~r~~~~~~~~el~e~k 671 (833)
.+.+|.+|++.+......++.+-+.+-+... +.=.++..|.+.+..+...+.+..-.+..++..+..++
T Consensus 803 ~e~~i~eL~~el~~lk~klq~~~~~~r~l~~-----------~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le 871 (1822)
T KOG4674|consen 803 CESRIKELERELQKLKKKLQEKSSDLRELTN-----------SLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLE 871 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888877665554443333322222211 22245566666666666666666666777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003293 672 EQLKELVGLLRQSEVRRKEVE 692 (833)
Q Consensus 672 ~~~~~l~~~l~~~e~q~~~l~ 692 (833)
.++.+|++.|+..+.+...|.
T Consensus 872 ~k~~eL~k~l~~~~~~~~~l~ 892 (1822)
T KOG4674|consen 872 IKLSELEKRLKSAKTQLLNLD 892 (1822)
T ss_pred HHHHHHHHHHHHhHHHHhhcc
Confidence 777777777777776665554
No 52
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.65 E-value=4.3 Score=53.71 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHhHHHhhh
Q 003293 594 ARISSLENMLSISSNSLVAMASQLSEAEER 623 (833)
Q Consensus 594 aqI~~Le~~~~~~~~~l~~l~~kl~e~ee~ 623 (833)
.+|..++..+....+.+..++..+......
T Consensus 970 ~qL~~~e~el~~~~~~ie~le~e~~~l~~~ 999 (1311)
T TIGR00606 970 DYLKQKETELNTVNAQLEECEKHQEKINED 999 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666655556666666655555443
No 53
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=96.61 E-value=1.5 Score=48.07 Aligned_cols=92 Identities=24% Similarity=0.318 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHh-H--h
Q 003293 406 SDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQF----RQWKASREKELLQLRKEGRRNEYERHKLQALNQ-RQKL-V--L 477 (833)
Q Consensus 406 ~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~----r~~k~~~eKEi~qLKke~rK~~~e~~kLe~~~~-kQ~~-V--L 477 (833)
.|.-...|...|..+...|+.|-+.|..|.+-+ +..=...+++.........+-..+...|+..-+ -|.. | |
T Consensus 104 EE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L 183 (310)
T PF09755_consen 104 EEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRL 183 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344445666666666666666666666555432 111111222222222222333333333333322 2222 2 7
Q ss_pred hhhhHHHHHHHHHHHHHHHh
Q 003293 478 QRKTEEAAMATKRLKELLES 497 (833)
Q Consensus 478 kRKtEEa~aa~kRLK~~le~ 497 (833)
...++..++-.+.|+..|+.
T Consensus 184 ~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 184 WKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 77888888888888888874
No 54
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.57 E-value=3.3 Score=51.33 Aligned_cols=219 Identities=21% Similarity=0.201 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHhhhhhHHHHHHHH
Q 003293 410 AKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATK 489 (833)
Q Consensus 410 ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~eKEi~qLKke~rK~~~e~~kLe~~~~kQ~~VLkRKtEEa~aa~k 489 (833)
+-.+..+|..-+.....++.+|..-.+.+-..+ ..|.-|+...+..+.+...|+.. +.+..-
T Consensus 289 ~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r----~hi~~lkesl~~ke~~~~~Lqsd--------------ve~Lr~ 350 (775)
T PF10174_consen 289 MDRLKLELSRKKSELEALQTRLETLEEQDSDMR----QHIEVLKESLRAKEQEAEMLQSD--------------VEALRF 350 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHh--------------HHHHHH
Confidence 556677777777777778888877666666543 23444777777777665555443 233333
Q ss_pred HHHHHHHhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh
Q 003293 490 RLKELLESRKSSARENSAVTNGNLTNGQSNEKSFQRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQVDEFAS 569 (833)
Q Consensus 490 RLK~~le~rK~~~r~~~~~~~~~~~~~~~~~~~~~~Wle~e~ev~~~~~e~~~~le~l~~~R~~L~~el~~Lk~~~e~~~ 569 (833)
||... ...++.....++.+.++...+..++.+|+...+..
T Consensus 351 rle~k---------------------------------------~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~- 390 (775)
T PF10174_consen 351 RLEEK---------------------------------------NSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKK- 390 (775)
T ss_pred HHHHH---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 32100 11233445566777788888888888887754432
Q ss_pred cCCCCCCCCCcccccccCChhhHHHHHHHHHHHHhhchHHHHHHHHHhHHHhhhhhccccccc-cccccCHHHHHHHHHH
Q 003293 570 KGLSPPRGKNGFARVSSMSPNARMARISSLENMLSISSNSLVAMASQLSEAEERDRLFTNRGR-WNQLRSMADAKNLLQY 648 (833)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~aqI~~Le~~~~~~~~~l~~l~~kl~e~ee~~r~~~~~~r-w~~irs~~eAk~~l~~ 648 (833)
...|.-|+..+.....++..=..++.++.++..+...... =..+-++.+|-.....
T Consensus 391 -----------------------e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker 447 (775)
T PF10174_consen 391 -----------------------ERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKER 447 (775)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHH
Confidence 2233333333333333444444555555555442111111 1234666777777777
Q ss_pred HHHHHHHHHHHHh-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003293 649 MFNSLADARCQLW-EKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARS 709 (833)
Q Consensus 649 L~~~~~~~r~~~~-~~~~el~e~k~~~~~l~~~l~~~e~q~~~l~~~~~~~~~~~~~~l~~~ 709 (833)
+...+...|.... +...++.-.+..+..+...+..++...-+-.-++....++++.+.++.
T Consensus 448 ~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~ 509 (775)
T PF10174_consen 448 LQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQ 509 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhcc
Confidence 7777655543222 333334333444433333333333333333333444455555555544
No 55
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.37 E-value=5.8 Score=51.92 Aligned_cols=51 Identities=29% Similarity=0.369 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 646 LQYMFNSLADARCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELK 696 (833)
Q Consensus 646 l~~L~~~~~~~r~~~~~~~~el~e~k~~~~~l~~~l~~~e~q~~~l~~~~~ 696 (833)
+..|.......+-...+.+.++..++..+..+...++..+.+...|..+..
T Consensus 448 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 498 (1163)
T COG1196 448 LEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQR 498 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333334444444455555555555555555555555555555444443
No 56
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.28 E-value=6.5 Score=51.62 Aligned_cols=90 Identities=21% Similarity=0.334 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHH
Q 003293 299 MDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHK 378 (833)
Q Consensus 299 l~~EL~eLnkqLe~KE~e~k~~~~~~~~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekk 378 (833)
++.++..++..|...+.....+...+.+.+.... .++.++..++..++.+.+.|......+..+-+....++.......
T Consensus 318 ~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~-~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~ 396 (1201)
T PF12128_consen 318 LNADLARIKSELDEIEQQKKDYEDADIEQLIARV-DQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNRQ 396 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433 455666666666666666666665555444444445555555555
Q ss_pred HHHHHHHHHHH
Q 003293 379 LKSLEAQILDL 389 (833)
Q Consensus 379 LqeLE~ei~~L 389 (833)
+..++.++..+
T Consensus 397 ~~~~~~~~~~~ 407 (1201)
T PF12128_consen 397 QERLQAQQDEI 407 (1201)
T ss_pred HHHHHHHHHHH
Confidence 55555554444
No 57
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.27 E-value=3.7 Score=48.63 Aligned_cols=107 Identities=20% Similarity=0.315 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHH
Q 003293 300 DKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKL 379 (833)
Q Consensus 300 ~~EL~eLnkqLe~KE~e~k~~~~~~~~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkL 379 (833)
.+||++||.+|+ .|=+|+.-||.+.+.|+.+.+.|......- ...++.-|
T Consensus 41 K~El~~LNDRLA-------------------~YIekVR~LEaqN~~L~~di~~lr~~~~~~-------ts~ik~~y---- 90 (546)
T KOG0977|consen 41 KKELQELNDRLA-------------------VYIEKVRFLEAQNRKLEHDINLLRGVVGRE-------TSGIKAKY---- 90 (546)
T ss_pred HHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHhhccCC-------CcchhHHh----
Confidence 367778886555 577999999999999999998887554321 12344445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 380 KSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWK 442 (833)
Q Consensus 380 qeLE~ei~~LkkK~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k 442 (833)
|.+|..+++-..+ ..+.+.+-+..+.+|+.|+..++..-.+..+-....-++.+.|-
T Consensus 91 ---e~El~~ar~~l~e---~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~ 147 (546)
T KOG0977|consen 91 ---EAELATARKLLDE---TARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYL 147 (546)
T ss_pred ---hhhHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 4555555544443 23455666777777777777777666665555555555555443
No 58
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.17 E-value=2.7 Score=46.28 Aligned_cols=53 Identities=23% Similarity=0.389 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 003293 331 HFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLK 390 (833)
Q Consensus 331 ~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLqeLE~ei~~Lk 390 (833)
.|=.++..||.+...|+.+++.+.... ......+...|+..|.++..+|..+.
T Consensus 15 ~YIekVr~LE~~N~~Le~~i~~~~~~~-------~~~~~~~~~~ye~el~~lr~~id~~~ 67 (312)
T PF00038_consen 15 SYIEKVRFLEQENKRLESEIEELREKK-------GEEVSRIKEMYEEELRELRRQIDDLS 67 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhcc-------cccCcccccchhhHHHHhHHhhhhHH
Confidence 466777777777777777666664331 23335567778777777777777665
No 59
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.12 E-value=3 Score=51.31 Aligned_cols=55 Identities=24% Similarity=0.185 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003293 647 QYMFNSLADARCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLAR 708 (833)
Q Consensus 647 ~~L~~~~~~~r~~~~~~~~el~e~k~~~~~l~~~l~~~e~q~~~l~~~~~~~~~~~~~~l~~ 708 (833)
.+|=+.|..+-+-+.++=.-|.+.+.++.-+++.|+.=|.+ +..+..+++-+++-
T Consensus 604 ~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~e-------i~~lk~ki~~~~av 658 (697)
T PF09726_consen 604 QHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKE-------IEELKAKIAQLLAV 658 (697)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhc
Confidence 35667888999999999999999999998888766644443 34445555555554
No 60
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.11 E-value=6.2 Score=49.77 Aligned_cols=63 Identities=11% Similarity=0.181 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003293 646 LQYMFNSLADARCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLAR 708 (833)
Q Consensus 646 l~~L~~~~~~~r~~~~~~~~el~e~k~~~~~l~~~l~~~e~q~~~l~~~~~~~~~~~~~~l~~ 708 (833)
+..|-..+.....+....+.+..+.+..+.++++.+++...+...+..+++...-+|.-+=.+
T Consensus 663 ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~ 725 (1074)
T KOG0250|consen 663 IEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNT 725 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444444444566667777778888888888888888888888888888887777665443
No 61
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=96.06 E-value=1.7 Score=48.92 Aligned_cols=81 Identities=17% Similarity=0.230 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 373 DVHAHKLKSLEAQILDLKKKQENQ-------VQLLK-------QKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQF 438 (833)
Q Consensus 373 e~~ekkLqeLE~ei~~LkkK~~~q-------~~llk-------~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~ 438 (833)
...=+|+..||.+..-|++|+..- ..+.+ .-...-.-|.+|+.||.+++..-..-++...++..++
T Consensus 204 N~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy 283 (552)
T KOG2129|consen 204 NSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQY 283 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335678888888888888887541 11110 1112223466788888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 003293 439 RQWKASREKELLQLR 453 (833)
Q Consensus 439 r~~k~~~eKEi~qLK 453 (833)
+..+-....|..+|.
T Consensus 284 ~~Ee~~~reen~rlQ 298 (552)
T KOG2129|consen 284 RAEEVDHREENERLQ 298 (552)
T ss_pred HHHHhhHHHHHHHHH
Confidence 887776666666554
No 62
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.79 E-value=7.6 Score=48.22 Aligned_cols=93 Identities=18% Similarity=0.225 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 370 KLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKEL 449 (833)
Q Consensus 370 KL~e~~ekkLqeLE~ei~~LkkK~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~eKEi 449 (833)
.....++.-+.+.+.-+..+.... -...+ ..-+.+..++.++..++.....|+..+-+-.-.+-..+ -++
T Consensus 433 ~~~~~lEea~~eker~~e~l~e~r-----~~~e~-e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~k----ee~ 502 (775)
T PF10174_consen 433 EALETLEEALREKERLQERLEEQR-----ERAEK-ERQEELETYQKELKELKAKLESLQKELSEKELQLEDAK----EEA 502 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh----hHH
Confidence 444556666666666666665221 11112 22345678999999999999999998887776555433 344
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHH
Q 003293 450 LQLRKEGRRNEYERHKLQALNQR 472 (833)
Q Consensus 450 ~qLKke~rK~~~e~~kLe~~~~k 472 (833)
..|-....|...+|.+|+-..++
T Consensus 503 s~l~s~~~K~~s~i~~l~I~lEk 525 (775)
T PF10174_consen 503 SKLASSQEKKDSEIERLEIELEK 525 (775)
T ss_pred HHHhhccchhhhHHHHHHHHHHH
Confidence 55777777777777776554433
No 63
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.44 E-value=6.6 Score=45.09 Aligned_cols=34 Identities=12% Similarity=0.072 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 413 LQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASRE 446 (833)
Q Consensus 413 L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~e 446 (833)
+-.-+..|-..+.+.+..+..........++...
T Consensus 148 ~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~ia 181 (420)
T COG4942 148 LAIYYGALNPARAERIDALKATLKQLAAVRAEIA 181 (420)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444555555544444444444433
No 64
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.43 E-value=4.5 Score=43.18 Aligned_cols=125 Identities=21% Similarity=0.376 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHH
Q 003293 298 SMDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAH 377 (833)
Q Consensus 298 ~l~~EL~eLnkqLe~KE~e~k~~~~~~~~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ek 377 (833)
++..++..+|+.+..++.+++. ++.++..++.+|..+..-++.+...+... . -.+
T Consensus 35 k~~~e~e~~~~~~~~~~~e~e~------------le~qv~~~e~ei~~~r~r~~~~e~kl~~v--------~-----~~~ 89 (239)
T COG1579 35 KAKAELEALNKALEALEIELED------------LENQVSQLESEIQEIRERIKRAEEKLSAV--------K-----DER 89 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------c-----cHH
Confidence 4556666667666666655433 33566666666666666666665555222 1 133
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003293 378 KLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGR 457 (833)
Q Consensus 378 kLqeLE~ei~~LkkK~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~eKEi~qLKke~r 457 (833)
.+..|+.++..++..... .+.++..|..++..+..+...+..++......|...+...+-++.-++.++.
T Consensus 90 e~~aL~~E~~~ak~r~~~----------le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~ 159 (239)
T COG1579 90 ELRALNIEIQIAKERINS----------LEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQ 159 (239)
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666543332 2334445555555555555555555555555566666666666655555443
No 65
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.16 E-value=6.5 Score=43.38 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003293 523 FQRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQ 563 (833)
Q Consensus 523 ~~~Wle~e~ev~~~~~e~~~~le~l~~~R~~L~~el~~Lk~ 563 (833)
+...+..+..+.-.-..++..|...++.|.+||..+..-.-
T Consensus 256 ~~~~~~eek~ireEN~rLqr~L~~E~erreal~R~lsesEs 296 (310)
T PF09755_consen 256 MAQYLQEEKEIREENRRLQRKLQREVERREALCRHLSESES 296 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888889999999999999999999999876543
No 66
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.16 E-value=10 Score=45.57 Aligned_cols=137 Identities=24% Similarity=0.288 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 325 TAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQ-DV---HAHKLKSLEAQILDLKKKQENQVQLL 400 (833)
Q Consensus 325 ~~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~-e~---~ekkLqeLE~ei~~LkkK~~~q~~ll 400 (833)
...++..|.++|..||.++-.+-+|||-|..++.++. ++.+.+|- +. ...-+.+|-.+=.+|-|++-.+..++
T Consensus 400 ~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk---~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iI 476 (961)
T KOG4673|consen 400 VSSLREEYHQRVATLEKKVQALTKERDALRREQKSLK---KELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAII 476 (961)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3558899999999999999999999999998887662 22222221 11 33455666666666666666555554
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHhHhhh
Q 003293 401 KQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYE-RHKLQALNQRQKLVLQR 479 (833)
Q Consensus 401 k~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~eKEi~qLKke~rK~~~e-~~kLe~~~~kQ~~VLkR 479 (833)
|.-...++. -..|-+.+..++.++..|.+++......++ +..|...+ |.++++...+|+.-+-+
T Consensus 477 kKLRAk~ke-------~etl~~K~ge~i~~L~sE~~~lk~il~~Ke--------e~Ek~~~E~I~k~~ae~~rq~~~~~~ 541 (961)
T KOG4673|consen 477 KKLRAKIKE-------AETLEEKKGELITKLQSEENKLKSILRDKE--------ETEKLLQETIEKHQAELTRQKDYYSN 541 (961)
T ss_pred HHHHHHhhh-------hhHHHHHhhhHHHHHHHHHHHHHHHhhhHH--------HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 322111111 122444555566677676666665433332 22222222 45555555555544333
No 67
>PRK03918 chromosome segregation protein; Provisional
Probab=95.15 E-value=13 Score=46.90 Aligned_cols=43 Identities=26% Similarity=0.335 Sum_probs=23.0
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 659 QLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQA 701 (833)
Q Consensus 659 ~~~~~~~el~e~k~~~~~l~~~l~~~e~q~~~l~~~~~~~~~~ 701 (833)
....++.++.++...+..++..+...+.+.+.+...+..+++.
T Consensus 667 ~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~~~~~l~~~ 709 (880)
T PRK03918 667 EYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKA 709 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555444444433
No 68
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.98 E-value=12 Score=45.58 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHhHHHh
Q 003293 592 RMARISSLENMLSISSNSLVAMASQLSEAE 621 (833)
Q Consensus 592 ~~aqI~~Le~~~~~~~~~l~~l~~kl~e~e 621 (833)
..+||++|...+..++.....+-.++.|.|
T Consensus 328 ltrqkadirc~LlEarrk~egfddk~~eLE 357 (1265)
T KOG0976|consen 328 LTRQKADIRCALLEARRKAEGFDDKLNELE 357 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 456677776666665555555555555443
No 69
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.91 E-value=4.2 Score=43.42 Aligned_cols=89 Identities=19% Similarity=0.255 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 373 DVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQL 452 (833)
Q Consensus 373 e~~ekkLqeLE~ei~~LkkK~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~eKEi~qL 452 (833)
+.++....+++.+|.++.++...-...+ ...+.+.+...|..||+..+.+.+.|...|.+ ........++++.-+
T Consensus 55 e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~----l~~~~~~l~~~i~~l 129 (239)
T COG1579 55 EDLENQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRALNIEIQIAKERINSLEDELAE----LMEEIEKLEKEIEDL 129 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3356666677777777765555433333 55667777788888888888888877766543 223333344445445
Q ss_pred HHHhhhhHHHHHHH
Q 003293 453 RKEGRRNEYERHKL 466 (833)
Q Consensus 453 Kke~rK~~~e~~kL 466 (833)
+....+.+..+.-.
T Consensus 130 ~~~~~~~e~~~~e~ 143 (239)
T COG1579 130 KERLERLEKNLAEA 143 (239)
T ss_pred HHHHHHHHHHHHHH
Confidence 55544444444333
No 70
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.66 E-value=18 Score=46.09 Aligned_cols=43 Identities=9% Similarity=0.006 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003293 522 SFQRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQV 564 (833)
Q Consensus 522 ~~~~Wle~e~ev~~~~~e~~~~le~l~~~R~~L~~el~~Lk~~ 564 (833)
.+..|+..-.++.-.+.-++++|+.|..--......+..|+..
T Consensus 487 el~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~ 529 (1293)
T KOG0996|consen 487 ELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGK 529 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666777777777776666666666666554
No 71
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.49 E-value=15 Score=44.45 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003293 524 QRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQV 564 (833)
Q Consensus 524 ~~Wle~e~ev~~~~~e~~~~le~l~~~R~~L~~el~~Lk~~ 564 (833)
..++..=++++-.+..-..++++.+.|=+.|-+++..|..+
T Consensus 487 s~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gk 527 (594)
T PF05667_consen 487 SAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGK 527 (594)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888888888888888888888888888887654
No 72
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.37 E-value=9.2 Score=41.42 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 003293 408 EAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQ 467 (833)
Q Consensus 408 ~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~eKEi~qLKke~rK~~~e~~kLe 467 (833)
..+..-+.-+..-..+-+-++..+......+...+..++.=++.++.+.-+...++.-|+
T Consensus 158 ~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 158 KSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333333333333334444455555555555666666666666667777666666666655
No 73
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.33 E-value=25 Score=46.31 Aligned_cols=145 Identities=21% Similarity=0.298 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--hhhcCCCCCCCCCcccccccCChhhHHHHHHHHHH
Q 003293 524 QRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQVDE--FASKGLSPPRGKNGFARVSSMSPNARMARISSLEN 601 (833)
Q Consensus 524 ~~Wle~e~ev~~~~~e~~~~le~l~~~R~~L~~el~~Lk~~~e--~~~~~~~~~~~~~~~~~~~~~~~~~~~aqI~~Le~ 601 (833)
..|-+-+-++...+..+...++ +.+.....++..|++... ....|.+|. .......+|..|+.
T Consensus 721 ~~~~~~~~~~d~~i~~i~~~i~---~~~~~~~~~~~~le~~~~~eL~~~GvD~~------------~I~~l~~~i~~L~~ 785 (1201)
T PF12128_consen 721 AQWQELEAELDEQIEQIKQEIA---AAKQEAKEQLKELEQQYNQELAGKGVDPE------------RIQQLKQEIEQLEK 785 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhCCCCHH------------HHHHHHHHHHHHHH
Confidence 3444444444444444444333 235555666666655433 222222221 12334556666655
Q ss_pred HHhhchHHHHHHHHHhHHHhhhhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHhH-HhHHHHHHHHHHHHHHHH
Q 003293 602 MLSISSNSLVAMASQLSEAEERDRLFTNRGRWNQLRSMADAKNLLQYMFNSLADARCQLWE-KDIEIKEMKEQLKELVGL 680 (833)
Q Consensus 602 ~~~~~~~~l~~l~~kl~e~ee~~r~~~~~~rw~~irs~~eAk~~l~~L~~~~~~~r~~~~~-~~~el~e~k~~~~~l~~~ 680 (833)
.+... ..-...+.+-+.-. ...|..+..+.+.+-.+..-...+...+..+.. ......+++....+++..
T Consensus 786 ~l~~i----e~~r~~V~eY~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~ 856 (1201)
T PF12128_consen 786 ELKRI----EERRAEVIEYEDWL-----QEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEE 856 (1201)
T ss_pred HHHHH----HHhHHHHHHHHHHH-----HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55322 22233333322211 456888777777776665544444333322222 222233444444444444
Q ss_pred HHHHHHHHHHHH
Q 003293 681 LRQSEVRRKEVE 692 (833)
Q Consensus 681 l~~~e~q~~~l~ 692 (833)
+...+.+...+.
T Consensus 857 ~~~~~~~~~~~~ 868 (1201)
T PF12128_consen 857 LKALEEQLEQLE 868 (1201)
T ss_pred HHHHHHHHHHHH
Confidence 444444443333
No 74
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.29 E-value=17 Score=44.27 Aligned_cols=24 Identities=17% Similarity=0.068 Sum_probs=15.1
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHH
Q 003293 658 CQLWEKDIEIKEMKEQLKELVGLL 681 (833)
Q Consensus 658 ~~~~~~~~el~e~k~~~~~l~~~l 681 (833)
-.......+++++++.+....-..
T Consensus 563 ~eidi~n~qlkelk~~~~~q~lak 586 (1118)
T KOG1029|consen 563 NEIDIFNNQLKELKEDVNSQQLAK 586 (1118)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344446678888888776654333
No 75
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.21 E-value=29 Score=46.61 Aligned_cols=162 Identities=22% Similarity=0.242 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCchhhhhHHHHHH---HHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q 003293 334 KKIAELEDEKRTVQKERDHLLTEIENL---ASNSDGQTQKLQDVH---AHKLKSLEAQILDLKKKQE----NQVQLLKQK 403 (833)
Q Consensus 334 kKi~eLE~ei~~LqkErdeLl~eL~~~---~~~~~~~~~KL~e~~---ekkLqeLE~ei~~LkkK~~----~q~~llk~K 403 (833)
.++.-|+..|..+..|.+.|...-..+ -...+...+.+.+++ ..++..++.++..|++... ...+|....
T Consensus 689 ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~ 768 (1822)
T KOG4674|consen 689 EKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQEL 768 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666554332221 111222333444443 3578888888888875332 256666677
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHhhhhhHH
Q 003293 404 QKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEE 483 (833)
Q Consensus 404 ~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~eKEi~qLKke~rK~~~e~~kLe~~~~kQ~~VLkRKtEE 483 (833)
.+...+...|+.-+-.|..++..+..---+...++......+..++..||++.......++.+......|-.=++..+++
T Consensus 769 ~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~ 848 (1822)
T KOG4674|consen 769 EKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDE 848 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 77777777777777777777777776666666777777778888899999999888888888888887777777766666
Q ss_pred HHHHHHHHHHHH
Q 003293 484 AAMATKRLKELL 495 (833)
Q Consensus 484 a~aa~kRLK~~l 495 (833)
...-..-+...+
T Consensus 849 ~~~~~~~~~~~l 860 (1822)
T KOG4674|consen 849 LESELKSLLTSL 860 (1822)
T ss_pred HHHHHHHHHHHH
Confidence 555555554444
No 76
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.14 E-value=9.2 Score=40.77 Aligned_cols=97 Identities=15% Similarity=0.294 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003293 331 HFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAA 410 (833)
Q Consensus 331 ~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLqeLE~ei~~LkkK~~~q~~llk~K~k~E~~i 410 (833)
..+.++..++..+..|+.+...+...|.++... ......-.+.|+.+|..|..++......... ..+.-.+.+..+
T Consensus 131 ~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~-~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~---aE~~v~~Le~~i 206 (237)
T PF00261_consen 131 RAEERAEAAESKIKELEEELKSVGNNLKSLEAS-EEKASEREDEYEEKIRDLEEKLKEAENRAEF---AERRVKKLEKEI 206 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 345777777777788777777777777665431 2222222233444444444444444322221 112222334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003293 411 KRLQDEIQFIKAQKVQLQHRI 431 (833)
Q Consensus 411 k~L~~EIq~mK~qKv~L~kkm 431 (833)
..|..+|...|.....+...|
T Consensus 207 d~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 207 DRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444333
No 77
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.10 E-value=6.6 Score=38.74 Aligned_cols=123 Identities=16% Similarity=0.339 Sum_probs=72.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHH
Q 003293 296 QNSMDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVH 375 (833)
Q Consensus 296 Q~~l~~EL~eLnkqLe~KE~e~k~~~~~~~~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ 375 (833)
...+...+..++.....++.++..+. .|+..|+.++..++.....+...+.... ....-.+.+
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~------------~K~~~lE~eld~~~~~l~~~k~~lee~~-----~~~~~~E~l 78 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQ------------KKNQQLEEELDKLEEQLKEAKEKLEESE-----KRKSNAEQL 78 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHhHHHH
Confidence 34556677777777777777766555 6777777777777777766666655432 222233578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 376 AHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQF 438 (833)
Q Consensus 376 ekkLqeLE~ei~~LkkK~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~ 438 (833)
.++++.||.++....+++.+-..-++. .+.+.-.+..-++.+..+.-..-+++-+-..++
T Consensus 79 ~rriq~LEeele~ae~~L~e~~ekl~e---~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 79 NRRIQLLEEELEEAEKKLKETTEKLRE---ADVKAEHFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 899999999999998777664332221 222233333334444444444444444433333
No 78
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=93.95 E-value=23 Score=44.49 Aligned_cols=100 Identities=19% Similarity=0.207 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------CchhhhhHHHHHHHH------------HHHHHH-HHHHHHH
Q 003293 330 QHFGKKIAELEDEKRTVQKERDHLLTEIENLAS------NSDGQTQKLQDVHAH------------KLKSLE-AQILDLK 390 (833)
Q Consensus 330 q~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~------~~~~~~~KL~e~~ek------------kLqeLE-~ei~~Lk 390 (833)
..-..++.+|..|+..|+.+...|..+++-... ..........++... ++..++ .+-....
T Consensus 318 dtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqsss~E 397 (1195)
T KOG4643|consen 318 DTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQSSSYE 397 (1195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHH
Confidence 334477888888888888887777554332211 011111222221111 111111 0111222
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 391 KKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQH 429 (833)
Q Consensus 391 kK~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~k 429 (833)
....-+..+.+.+.+.+.++..|.++|+++.+++++|..
T Consensus 398 e~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled 436 (1195)
T KOG4643|consen 398 ELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELED 436 (1195)
T ss_pred HHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 233336677777788899999999999999999998764
No 79
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.71 E-value=22 Score=43.43 Aligned_cols=48 Identities=23% Similarity=0.153 Sum_probs=36.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHH
Q 003293 448 ELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELL 495 (833)
Q Consensus 448 Ei~qLKke~rK~~~e~~kLe~~~~kQ~~VLkRKtEEa~aa~kRLK~~l 495 (833)
+|.-+.+.-.....+|..|++.-.-+..-|.+-+-|....+.+||...
T Consensus 473 ~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q 520 (1118)
T KOG1029|consen 473 EIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQ 520 (1118)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Confidence 556677777777778888877777677777888888888888887443
No 80
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.71 E-value=1.7 Score=41.64 Aligned_cols=90 Identities=21% Similarity=0.358 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 003293 334 KKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRL 413 (833)
Q Consensus 334 kKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLqeLE~ei~~LkkK~~~q~~llk~K~k~E~~ik~L 413 (833)
-.+..+..++..++.+||.+..+|-.+... . ..+ .....++..|+.++.+|+.++..- +.+-=++.+++..|
T Consensus 30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~-~---e~~-~~~~~~~~~L~~el~~l~~ry~t~---LellGEK~E~veEL 101 (120)
T PF12325_consen 30 GELASLQEELARLEAERDELREEIVKLMEE-N---EEL-RALKKEVEELEQELEELQQRYQTL---LELLGEKSEEVEEL 101 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHH-HHHHHHHHHHHHHHHHHHHHHHHH---HHHhcchHHHHHHH
Confidence 445566677777777777777776654321 1 111 224577889999999999887765 44444455667788
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003293 414 QDEIQFIKAQKVQLQHRI 431 (833)
Q Consensus 414 ~~EIq~mK~qKv~L~kkm 431 (833)
+..|..||......+..|
T Consensus 102 ~~Dv~DlK~myr~Qi~~l 119 (120)
T PF12325_consen 102 RADVQDLKEMYREQIDQL 119 (120)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999998877766554
No 81
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.42 E-value=27 Score=43.47 Aligned_cols=197 Identities=17% Similarity=0.141 Sum_probs=90.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003293 477 LQRKTEEAAMATKRLKELLESRKSSARENSAVTNGNLTNGQSNEKSFQRWLDHELEVMVNVHEVRFDYEKQSQVRAALAE 556 (833)
Q Consensus 477 LkRKtEEa~aa~kRLK~~le~rK~~~r~~~~~~~~~~~~~~~~~~~~~~Wle~e~ev~~~~~e~~~~le~l~~~R~~L~~ 556 (833)
++-+.+|...-.-=||.-.+.. ++.+. ..+.-.++..-..+..+-=.+..++.-.-.-.+++..+.+
T Consensus 337 lkEr~deletdlEILKaEmeek------G~~~~-------~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~k 403 (1243)
T KOG0971|consen 337 LKERVDELETDLEILKAEMEEK------GSDGQ-------AASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQK 403 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc------CCCCc-------ccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 6667777766655555444311 11110 1122345666666666666666777666666667777777
Q ss_pred HHHHHHhhhHhhhcCCCCCCCCCcccccccCChhhHHHHHHHHHHHHhhchHHHHHHHHHhHH----Hhhhhhccccccc
Q 003293 557 ELAVLKQVDEFASKGLSPPRGKNGFARVSSMSPNARMARISSLENMLSISSNSLVAMASQLSE----AEERDRLFTNRGR 632 (833)
Q Consensus 557 el~~Lk~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~aqI~~Le~~~~~~~~~l~~l~~kl~e----~ee~~r~~~~~~r 632 (833)
++...+...+-... .+...+-..+-.+++|++|+..+-.+=|. .+|-.+|++ .|++.+-.
T Consensus 404 elE~k~sE~~eL~r----------~kE~Lsr~~d~aEs~iadlkEQVDAAlGA-E~MV~qLtdknlnlEekVklL----- 467 (1243)
T KOG0971|consen 404 ELEKKNSELEELRR----------QKERLSRELDQAESTIADLKEQVDAALGA-EEMVEQLTDKNLNLEEKVKLL----- 467 (1243)
T ss_pred HHHHHhhHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhhcH-HHHHHHHHhhccCHHHHHHHH-----
Confidence 76665543221110 00000111233456777775544443322 333333333 34432100
Q ss_pred cccccCHHHHHHHHHHHHHHHHH-HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 633 WNQLRSMADAKNLLQYMFNSLAD-ARCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITL 706 (833)
Q Consensus 633 w~~irs~~eAk~~l~~L~~~~~~-~r~~~~~~~~el~e~k~~~~~l~~~l~~~e~q~~~l~~~~~~~~~~~~~~l 706 (833)
=+.|.. --++..+...++. .+-..-++..||-.++....+++++....-.-.-++..-+..+++-|+-|=
T Consensus 468 eetv~d----lEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lq 538 (1243)
T KOG0971|consen 468 EETVGD----LEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQ 538 (1243)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 011222 2233344433332 333444555556555555555554443332222234444455666555543
No 82
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.33 E-value=32 Score=44.08 Aligned_cols=77 Identities=21% Similarity=0.217 Sum_probs=51.8
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 003293 635 QLRSMADAKNLLQYMFNSLADARCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSAS 711 (833)
Q Consensus 635 ~irs~~eAk~~l~~L~~~~~~~r~~~~~~~~el~e~k~~~~~l~~~l~~~e~q~~~l~~~~~~~~~~~~~~l~~~~~ 711 (833)
.++-+.+++..|..+...+...+-.+..+..+|..++..+.+.++.|..+-.....+..++-.+.++|.-+=++.++
T Consensus 519 ~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~ 595 (1293)
T KOG0996|consen 519 GLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSS 595 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666666666666666666777777777777777777777666666666666676777777776665444
No 83
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.28 E-value=23 Score=42.28 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 405 KSDEAAKRLQDEIQFIKAQKVQLQH 429 (833)
Q Consensus 405 k~E~~ik~L~~EIq~mK~qKv~L~k 429 (833)
..+.++..+..+|..+..+...+..
T Consensus 178 e~~~~i~~l~~~i~~l~~~i~~~~~ 202 (562)
T PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYNK 202 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555555443333
No 84
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.00 E-value=25 Score=42.00 Aligned_cols=73 Identities=19% Similarity=0.239 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003293 638 SMADAKNLLQYMFNSLADARCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSA 710 (833)
Q Consensus 638 s~~eAk~~l~~L~~~~~~~r~~~~~~~~el~e~k~~~~~l~~~l~~~e~q~~~l~~~~~~~~~~~~~~l~~~~ 710 (833)
.+.+--..|+.+...+...+........++..++..+.++...+..++.+.+....+...-...-+.+|...-
T Consensus 366 ~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik 438 (522)
T PF05701_consen 366 AMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIK 438 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556668889999999999999999999999999999999999999999999999999888888888887763
No 85
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.82 E-value=34 Score=43.11 Aligned_cols=41 Identities=12% Similarity=0.159 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003293 525 RWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQVD 565 (833)
Q Consensus 525 ~Wle~e~ev~~~~~e~~~~le~l~~~R~~L~~el~~Lk~~~ 565 (833)
..+...-........+..++.++..+-+....++..|.++.
T Consensus 896 ~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~ 936 (1174)
T KOG0933|consen 896 KCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKH 936 (1174)
T ss_pred HHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhc
Confidence 33344444445566666677777777777777776665543
No 86
>PRK09039 hypothetical protein; Validated
Probab=92.70 E-value=16 Score=41.33 Aligned_cols=117 Identities=17% Similarity=0.217 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHH
Q 003293 299 MDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHK 378 (833)
Q Consensus 299 l~~EL~eLnkqLe~KE~e~k~~~~~~~~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekk 378 (833)
++++|.+|+.+|...-..+.. . .......+..+.+++.++..++.+|+.|...+..... .....+.+
T Consensus 51 ~~~eL~~L~~qIa~L~e~L~l-e----~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~--------~~~~~~~~ 117 (343)
T PRK09039 51 KDSALDRLNSQIAELADLLSL-E----RQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAG--------AGAAAEGR 117 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-H----HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------hcchHHHH
Confidence 455555565555543222111 1 1123556678888888888888888888776542210 00123344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 379 LKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQF 438 (833)
Q Consensus 379 LqeLE~ei~~LkkK~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~ 438 (833)
+..++.++..++..+.+ .--++..|+.+|..++.|...|.-.+..-..+-
T Consensus 118 ~~~l~~~L~~~k~~~se----------~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 118 AGELAQELDSEKQVSAR----------ALAQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555543332 334567788888888888666666655444433
No 87
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=92.65 E-value=27 Score=41.56 Aligned_cols=8 Identities=38% Similarity=0.692 Sum_probs=4.6
Q ss_pred CcceeeeE
Q 003293 24 SRSHAIFT 31 (833)
Q Consensus 24 SRSHaIft 31 (833)
+++|.||.
T Consensus 3 ~~~~ViF~ 10 (546)
T PF07888_consen 3 KQSQVIFN 10 (546)
T ss_pred CCCeEEEe
Confidence 34666664
No 88
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=92.26 E-value=0.04 Score=69.02 Aligned_cols=42 Identities=24% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 657 RCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLR 698 (833)
Q Consensus 657 r~~~~~~~~el~e~k~~~~~l~~~l~~~e~q~~~l~~~~~~~ 698 (833)
-.++..++.++.+++..+.++++.|+..+....-|...+..+
T Consensus 460 ek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~ 501 (859)
T PF01576_consen 460 EKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQL 501 (859)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555666666666666666666665555444444444333
No 89
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=92.14 E-value=27 Score=40.38 Aligned_cols=37 Identities=8% Similarity=0.170 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 003293 647 QYMFNSLADARCQLWEKDIEIKEMKEQLKELVGLLRQ 683 (833)
Q Consensus 647 ~~L~~~~~~~r~~~~~~~~el~e~k~~~~~l~~~l~~ 683 (833)
+.+|..+.....=+..++..|.+++..+...-..|+.
T Consensus 583 k~V~~v~~~~~~fk~~IQssledl~~~l~k~~~~l~~ 619 (622)
T COG5185 583 KQVIHVIDITSKFKINIQSSLEDLENELGKVIEELRN 619 (622)
T ss_pred HHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHh
Confidence 5566666666666667777777777766655544443
No 90
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.01 E-value=33 Score=40.97 Aligned_cols=91 Identities=13% Similarity=0.225 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 331 HFGKKIAELEDEKRTVQKERDHLLTEIENLAS----------NSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLL 400 (833)
Q Consensus 331 ~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~----------~~~~~~~KL~e~~ekkLqeLE~ei~~LkkK~~~q~~ll 400 (833)
.|+..+..++.++..++.+.+.+...+..... -.+. ..++ ......+..++.++..+.....+.....
T Consensus 252 ~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~-~~~~-~~l~d~i~~l~~~l~~l~~~i~~~~~~~ 329 (562)
T PHA02562 252 DPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEG-PDRI-TKIKDKLKELQHSLEKLDTAIDELEEIM 329 (562)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCc-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666676666666666655443311 0011 1111 2233455555555555555444443333
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Q 003293 401 KQKQKSDEAAKRLQDEIQFIKAQ 423 (833)
Q Consensus 401 k~K~k~E~~ik~L~~EIq~mK~q 423 (833)
....+...++..++..|...+..
T Consensus 330 ~~~~~~~~~i~el~~~i~~~~~~ 352 (562)
T PHA02562 330 DEFNEQSKKLLELKNKISTNKQS 352 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444
No 91
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.88 E-value=44 Score=42.20 Aligned_cols=126 Identities=21% Similarity=0.268 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 003293 334 KKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRL 413 (833)
Q Consensus 334 kKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLqeLE~ei~~LkkK~~~q~~llk~K~k~E~~ik~L 413 (833)
+++.+.+.+++..++|.+.+..+|+.+.+ ...+-..++.++.-++-.|---.. +..+.++.+++..-.+..+.+..+
T Consensus 677 ~~l~~~~~~~~~~q~el~~le~eL~~le~-~~~kf~~l~~ql~l~~~~l~l~~~--r~~~~e~~~~~~~~~~~~e~v~e~ 753 (1174)
T KOG0933|consen 677 QKLKQAQKELRAIQKELEALERELKSLEA-QSQKFRDLKQQLELKLHELALLEK--RLEQNEFHKLLDDLKELLEEVEES 753 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH--HHhcChHhhHHHHHHHHHHHHHHH
Confidence 56778888999999999999988887754 233344454444433333222111 223444555555555555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 003293 414 QDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYE 462 (833)
Q Consensus 414 ~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~eKEi~qLKke~rK~~~e 462 (833)
+.+|..-.....+-+.++..=......|+..+++++..|.++-.....+
T Consensus 754 ~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~ 802 (1174)
T KOG0933|consen 754 EQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQR 802 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHH
Confidence 6666555544444444444444455566666776666666655544444
No 92
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=91.80 E-value=39 Score=41.48 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=21.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 398 QLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHR 430 (833)
Q Consensus 398 ~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kk 430 (833)
.|-+++...++.++.++.+++.+|+.+.+-...
T Consensus 281 ~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gd 313 (1265)
T KOG0976|consen 281 VLGDELSQKEELVKELQEELDTLKQTRTRADGD 313 (1265)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345566666777777777777777766655443
No 93
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=91.75 E-value=0.04 Score=65.93 Aligned_cols=79 Identities=43% Similarity=0.537 Sum_probs=65.4
Q ss_pred hhcCccccCCCCcccCcceeeeEEEEEeeeccCCCCCCCCCCCCCccchhhhceeeeeecCCCccccccCCcccccchhh
Q 003293 9 SLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGV 88 (833)
Q Consensus 9 ~~~R~~~~T~~N~~SSRSHaIfti~i~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~~~g~r~kE~~ 88 (833)
...+..+++.+|..++++|++|+.+...... .....+ ++.|||||+||. -+.+-|.++++..
T Consensus 488 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~---------------~~~~~~--~n~~~~~~~e~~-~s~~~~~~l~~~~ 549 (568)
T COG5059 488 SKLRSSASTKLNLRSSRSHSKFRDHLNGSNS---------------STKELS--LNQVDLAGSERK-VSQSVGELLRETQ 549 (568)
T ss_pred ccchhhcccchhhhhcccchhhhhcccchhh---------------hhHHHH--hhhhhccccccc-hhhhhHHHHHhhH
Confidence 5567788899999999999999988743111 011122 899999999999 8999999999999
Q ss_pred hhhhhhhHHHHHHHHhc
Q 003293 89 HINRGLLALGNVISALG 105 (833)
Q Consensus 89 ~IN~SL~aLg~vI~aL~ 105 (833)
.+|++|..+|.+|.++.
T Consensus 550 ~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 550 SLNKSLSSLGDVIHALG 566 (568)
T ss_pred hhhhccccchhhhhhcc
Confidence 99999999999999875
No 94
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=91.34 E-value=38 Score=40.38 Aligned_cols=202 Identities=21% Similarity=0.230 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH
Q 003293 330 QHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQEN-----------QVQ 398 (833)
Q Consensus 330 q~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLqeLE~ei~~LkkK~~~-----------q~~ 398 (833)
.+|-++..++...+..+..+-.....++.... ....+-|+.-|.-|..||..... ...
T Consensus 210 ~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk-----------~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~ 278 (511)
T PF09787_consen 210 IEYLRESGELQEQLELLKAEGESEEAELQQYK-----------QKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEE 278 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------HHHHHHhcCHHHHHHHHHhcccccccccccchhcchh
Confidence 34556666666666666555555555554331 11123345555566666652222 122
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHh
Q 003293 399 LLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQL---RKEGRRNEYERHKLQALNQRQKL 475 (833)
Q Consensus 399 llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~eKEi~qL---Kke~rK~~~e~~kLe~~~~kQ~~ 475 (833)
+-.+..-..+.+..|+..|..++.+-..+.-++..+.+.|+.......--+..+ ..+.+....++..++....++..
T Consensus 279 l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~~s 358 (511)
T PF09787_consen 279 LKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSRQKS 358 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 222333333444444444444444445555555555555555444433333222 55666777778888888889999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHH
Q 003293 476 VLQRKTEEAAMATKRLKELLESRKSSARENSAVTNGNLTNGQSNEKSFQRWLDHELEVMV---NVHEVRFDYEKQSQVRA 552 (833)
Q Consensus 476 VLkRKtEEa~aa~kRLK~~le~rK~~~r~~~~~~~~~~~~~~~~~~~~~~Wle~e~ev~~---~~~e~~~~le~l~~~R~ 552 (833)
++..++.+...-.-+|+.++..+.. ...|-|-|-.+.. .+..-...||.+.-+|.
T Consensus 359 ~~~~k~~~ke~E~q~lr~~l~~~~~----------------------~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~ 416 (511)
T PF09787_consen 359 PLQLKLKEKESEIQKLRNQLSARAS----------------------SSSWNELESRLTQLTESLIQKQTQLESLGSEKN 416 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc----------------------cCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhh
Confidence 9999988888888888877754320 1234444433332 34555678888889999
Q ss_pred HHHHHHHHHHhh
Q 003293 553 ALAEELAVLKQV 564 (833)
Q Consensus 553 ~L~~el~~Lk~~ 564 (833)
.|.=.|..+...
T Consensus 417 al~lqlErl~~~ 428 (511)
T PF09787_consen 417 ALRLQLERLETQ 428 (511)
T ss_pred hccccHHHHHHH
Confidence 998888887643
No 95
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=90.58 E-value=66 Score=41.87 Aligned_cols=42 Identities=7% Similarity=0.022 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003293 523 FQRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQV 564 (833)
Q Consensus 523 ~~~Wle~e~ev~~~~~e~~~~le~l~~~R~~L~~el~~Lk~~ 564 (833)
+..-++.+..+.-.+......++.+.++.......+..+.+.
T Consensus 260 i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~ 301 (1109)
T PRK10929 260 IVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQA 301 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577778888888888888888888888877777777666553
No 96
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=90.45 E-value=62 Score=41.34 Aligned_cols=54 Identities=15% Similarity=0.256 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhH
Q 003293 407 DEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWK---ASREKELLQLRKEGRRNE 460 (833)
Q Consensus 407 E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k---~~~eKEi~qLKke~rK~~ 460 (833)
+.++..+..+|...+...-.+..+|++...+.+... ...+..+..++.+..-+.
T Consensus 280 ~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d 336 (1074)
T KOG0250|consen 280 ERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQD 336 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhh
Confidence 444555555666666666666777766666666555 333444444444443333
No 97
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=90.12 E-value=52 Score=39.96 Aligned_cols=141 Identities=21% Similarity=0.350 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHH---H
Q 003293 297 NSMDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQ---D 373 (833)
Q Consensus 297 ~~l~~EL~eLnkqLe~KE~e~k~~~~~~~~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~---e 373 (833)
..+..++.+|..+++..+.+++.+... ..+....+.+.+.+...++.+..-. ..+..+....+.+..||+ +
T Consensus 331 ~~l~~~l~~l~~~i~~~~~~~~~l~~~-----~~q~~~e~~~~~~~~~~le~~~~l~-~k~~~lL~d~e~ni~kL~~~v~ 404 (594)
T PF05667_consen 331 EELQEQLDELESQIEELEAEIKMLKSS-----LKQLEEELEEKEAENEELEEELKLK-KKTVELLPDAEENIAKLQALVE 404 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCcHHHHHHHHHHHH
Confidence 456677777887777777777665511 1122233334444444444444322 222222333445555544 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 374 VHAHKLKSLEAQILDLKKKQENQVQLLK-QKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKA 443 (833)
Q Consensus 374 ~~ekkLqeLE~ei~~LkkK~~~q~~llk-~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~ 443 (833)
....++..|..+-...+....+.-+.++ .....+.+.++.-.+|+.++.....+...++...+.+.+...
T Consensus 405 ~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~ 475 (594)
T PF05667_consen 405 ASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVK 475 (594)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777777765555444443 333345555566677777777766666666666666665444
No 98
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=90.05 E-value=42 Score=38.77 Aligned_cols=71 Identities=18% Similarity=0.329 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHH
Q 003293 301 KELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLK 380 (833)
Q Consensus 301 ~EL~eLnkqLe~KE~e~k~~~~~~~~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLq 380 (833)
+.+..+.++|+.++..+.... ++...|+.+|..++.+...+..+|..... .+.+ .+++|.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~------------~~~~kL~~~lk~~e~~i~~~~~ql~~s~~-------~l~~-~~~~I~ 97 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQ------------DQRAKLEKQLKSLETEIASLEAQLIETAD-------DLKK-LRKQIA 97 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHH-HHhhHH
Confidence 344445555555555443322 55556666666666666666666554321 1111 345555
Q ss_pred HHHHHHHHHHH
Q 003293 381 SLEAQILDLKK 391 (833)
Q Consensus 381 eLE~ei~~Lkk 391 (833)
.++..|..|..
T Consensus 98 ~~~~~l~~l~~ 108 (420)
T COG4942 98 DLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 99
>PRK04863 mukB cell division protein MukB; Provisional
Probab=89.59 E-value=92 Score=42.00 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHhhchHHHHHHHH
Q 003293 591 ARMARISSLENMLSISSNSLVAMAS 615 (833)
Q Consensus 591 ~~~aqI~~Le~~~~~~~~~l~~l~~ 615 (833)
...+++.++..........-..+.+
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~r~ 586 (1486)
T PRK04863 562 ELEARLESLSESVSEARERRMALRQ 586 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777775444333333333333
No 100
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=89.55 E-value=38 Score=37.55 Aligned_cols=28 Identities=29% Similarity=0.498 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 206 EVQVLKERIAWLEAANEDLCRELHEYRS 233 (833)
Q Consensus 206 ~~~~Lkeki~~Le~ene~L~~EL~e~r~ 233 (833)
.+..|.+++..|+.+|..|+.|-..+..
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~ 188 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKT 188 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4577888999999999999988765543
No 101
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=89.54 E-value=0.1 Score=65.41 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003293 535 VNVHEVRFDYEKQSQVRAALAEELAVLKQV 564 (833)
Q Consensus 535 ~~~~e~~~~le~l~~~R~~L~~el~~Lk~~ 564 (833)
..+.+++..++.....|+.+..++..+...
T Consensus 616 ~elee~~~~~~~a~r~rk~aE~el~e~~~~ 645 (859)
T PF01576_consen 616 AELEELREALEQAERARKQAESELDELQER 645 (859)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777788888887776554
No 102
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=88.33 E-value=60 Score=38.25 Aligned_cols=98 Identities=14% Similarity=0.247 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-Cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----chhh---
Q 003293 298 SMDKELNELNRRLEEKESEMKLVGG-SD--TAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASN----SDGQ--- 367 (833)
Q Consensus 298 ~l~~EL~eLnkqLe~KE~e~k~~~~-~~--~~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~----~~~~--- 367 (833)
-++.++.++..+++..+..+..|.. +. .......+..++..+++++..++.++..+...+..+... ....
T Consensus 165 fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~ 244 (498)
T TIGR03007 165 FIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAG 244 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcc
Confidence 3566777777777777776665532 11 111122344566666666666666665555444332210 0000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 368 TQKLQDVHAHKLKSLEAQILDLKKKQEN 395 (833)
Q Consensus 368 ~~KL~e~~ekkLqeLE~ei~~LkkK~~~ 395 (833)
....-...+.+|.+++.++..+...+.+
T Consensus 245 ~~~~~~~l~~~l~~l~~~l~~l~~~y~~ 272 (498)
T TIGR03007 245 SSVANSELDGRIEALEKQLDALRLRYTD 272 (498)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHHhcc
Confidence 0001123567899999999999877765
No 103
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=88.32 E-value=41 Score=41.38 Aligned_cols=142 Identities=23% Similarity=0.326 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhh
Q 003293 297 NSMDKELNELNRRLEEKESEMKLVGGSD-------TAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQ 369 (833)
Q Consensus 297 ~~l~~EL~eLnkqLe~KE~e~k~~~~~~-------~~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~ 369 (833)
++|+..|+-||.+|.++|.-.+.....+ ++.+.-.++.++.+.......|+.--++|+..+++.. +++ +
T Consensus 397 aqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~---~En-k 472 (861)
T PF15254_consen 397 AQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQK---EEN-K 472 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH---HHH-H
Confidence 4678899999999998887655433221 3456667788888888888888888888888777652 111 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 370 KLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKEL 449 (833)
Q Consensus 370 KL~e~~ekkLqeLE~ei~~LkkK~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~eKEi 449 (833)
+ +..-+++-+.++.+.++.+.. +..+.|.+-++.+. .+|.- +|+. ...++|.
T Consensus 473 ~----~~~~~~ekd~~l~~~kq~~d~--e~~rik~ev~eal~-------~~k~~-------------q~kL--e~sekEN 524 (861)
T PF15254_consen 473 R----LRKMFQEKDQELLENKQQFDI--ETTRIKIEVEEALV-------NVKSL-------------QFKL--EASEKEN 524 (861)
T ss_pred H----HHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHH-------HHHHH-------------hhhH--HHHHhhh
Confidence 2 333444445555554443332 22223222222221 11111 2222 2345666
Q ss_pred HHHHHHhhhhHHHHHHHHHHH
Q 003293 450 LQLRKEGRRNEYERHKLQALN 470 (833)
Q Consensus 450 ~qLKke~rK~~~e~~kLe~~~ 470 (833)
.-|.-..|.++.||.+|..+.
T Consensus 525 ~iL~itlrQrDaEi~RL~eLt 545 (861)
T PF15254_consen 525 QILGITLRQRDAEIERLRELT 545 (861)
T ss_pred hHhhhHHHHHHHHHHHHHHHH
Confidence 667778888888888776543
No 104
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.18 E-value=37 Score=37.96 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 375 HAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRK 454 (833)
Q Consensus 375 ~ekkLqeLE~ei~~LkkK~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~eKEi~qLKk 454 (833)
.+..|..+..+|...+++.. ..+.++..+..+|..+..++.++...|.+-.......+.--..||..|+.
T Consensus 214 lr~eL~~~~~~i~~~k~~l~----------el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~ 283 (325)
T PF08317_consen 214 LRQELAEQKEEIEAKKKELA----------ELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKA 283 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 44555555555555544333 23444556666677777777776666654333332222223344444443
No 105
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=88.13 E-value=69 Score=38.72 Aligned_cols=104 Identities=13% Similarity=0.089 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHhHHHhhhhhccccccc-cccccCHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 003293 594 ARISSLENMLSISSNSLVAMASQLSEAEERDRLFTNRGR-WNQLRSMADAKNLLQYMFNSLADARCQLWEKDIEIKEMKE 672 (833)
Q Consensus 594 aqI~~Le~~~~~~~~~l~~l~~kl~e~ee~~r~~~~~~r-w~~irs~~eAk~~l~~L~~~~~~~r~~~~~~~~el~e~k~ 672 (833)
..|..|..++..++..|..+..++.+.....+....++. =+.+--...+..-+..|-..+......+..++.++.++.
T Consensus 404 e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~- 482 (569)
T PRK04778 404 EMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEAT- 482 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHH-
Confidence 345566666666666777777777765443321111111 000111112222223333333322223333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 673 QLKELVGLLRQSEVRRKEVEEELKLREQAVAI 704 (833)
Q Consensus 673 ~~~~l~~~l~~~e~q~~~l~~~~~~~~~~~~~ 704 (833)
.++.....+..+|.......++.+.+
T Consensus 483 ------~~~~~L~~q~~dL~~~a~~lE~~Iqy 508 (569)
T PRK04778 483 ------EDVETLEEETEELVENATLTEQLIQY 508 (569)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444456666666666666666666
No 106
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=88.05 E-value=73 Score=38.92 Aligned_cols=388 Identities=18% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCCCcchhhhhhhhhhccccccccccCCCCchhHHHHHHH
Q 003293 210 LKERIAWLEAANEDLCRELHEYRSRCTDVEQRETDAQDGSPCPLKSDGLKRSLNSIEQTDYQMGENITGDSREIDEVAKE 289 (833)
Q Consensus 210 Lkeki~~Le~ene~L~~EL~e~r~rl~~leq~~~d~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake 289 (833)
|.+.+..|..+.+.+-..|........+.-..+. ..-
T Consensus 2 l~e~l~qlq~Erd~ya~~lk~e~a~~qqr~~qms-------------------------------------------eev 38 (617)
T PF15070_consen 2 LMESLKQLQAERDQYAQQLKEESAQWQQRMQQMS-------------------------------------------EEV 38 (617)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------HHH
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhh
Q 003293 290 WEHTLLQNSMDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQ 369 (833)
Q Consensus 290 ~E~~~~Q~~l~~EL~eLnkqLe~KE~e~k~~~~~~~~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~ 369 (833)
.............+.+|.+.|......+..........--...+ ..|+.++..|++|++.|..++..... ......
T Consensus 39 ~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E---~~Lq~E~~~L~kElE~L~~qlqaqv~-~ne~Ls 114 (617)
T PF15070_consen 39 RTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVE---QQLQAEAEHLRKELESLEEQLQAQVE-NNEQLS 114 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 370 KLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKEL 449 (833)
Q Consensus 370 KL~e~~ekkLqeLE~ei~~LkkK~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~eKEi 449 (833)
.+..+.+.+|.+||..+..++....+..+++..-+..-..+.+--.--..+|.+-..|+...-.=++.-......+.-|
T Consensus 115 ~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~E- 193 (617)
T PF15070_consen 115 RLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSE- 193 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHH-
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCCCcchHHHHHHHHH
Q 003293 450 LQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESRKSSARENSAVTNGNLTNGQSNEKSFQRWLDH 529 (833)
Q Consensus 450 ~qLKke~rK~~~e~~kLe~~~~kQ~~VLkRKtEEa~aa~kRLK~~le~rK~~~r~~~~~~~~~~~~~~~~~~~~~~Wle~ 529 (833)
...+++..+. +..++..-..-+..+..|.+|+ ..|-..
T Consensus 194 q~~~keL~~k---l~~l~~~l~~~~e~le~K~qE~---------------------------------------~~Lq~q 231 (617)
T PF15070_consen 194 QHVKKELQKK---LGELQEKLHNLKEKLELKSQEA---------------------------------------QSLQEQ 231 (617)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHH---------------------------------------HHHHHH
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhHhhhcCCCCCCCCCcccccccCChhhHHHHHHHHHHHHhh
Q 003293 530 ELEVMVNVHEVRFDYEKQSQVRAALAEEL----AVLKQVDEFASKGLSPPRGKNGFARVSSMSPNARMARISSLENMLSI 605 (833)
Q Consensus 530 e~ev~~~~~e~~~~le~l~~~R~~L~~el----~~Lk~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~aqI~~Le~~~~~ 605 (833)
.-...-.+.....+|..+..++..|..++ ..+.+-+....+ -..++.-....+..
T Consensus 232 ~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q---------------------~~~~~E~~~~ELq~ 290 (617)
T PF15070_consen 232 RDQYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQ---------------------GKVQLEMAHQELQE 290 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------------hHHHHHHHHHHHHH
Q ss_pred chHHHHHHHHHhHHHhhhhhccccccccccccCHHH----------------HHHHHHHHHHHHHHHHHHHhHHhHHHHH
Q 003293 606 SSNSLVAMASQLSEAEERDRLFTNRGRWNQLRSMAD----------------AKNLLQYMFNSLADARCQLWEKDIEIKE 669 (833)
Q Consensus 606 ~~~~l~~l~~kl~e~ee~~r~~~~~~rw~~irs~~e----------------Ak~~l~~L~~~~~~~r~~~~~~~~el~e 669 (833)
+...|.++.+.--............+-|+++.+-.+ .+-++..+|+.+...
T Consensus 291 ~qe~Lea~~qqNqqL~~qls~~~~~~eg~~~~~~~~~ee~~~~~~~ipEd~es~E~m~~f~~~a~~~------------- 357 (617)
T PF15070_consen 291 AQEHLEALSQQNQQLQAQLSLMALPGEGDGLESESEEEEAPQPMPSIPEDLESREAMVEFFNSALAQ------------- 357 (617)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhcCCCCCcccccccccccccCcCcccccccccHHHHHHHHHHHHhh-------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcccchhc
Q 003293 670 MKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSASGNLHNSLEHF 721 (833)
Q Consensus 670 ~k~~~~~l~~~l~~~e~q~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 721 (833)
+.+.-..+...|.+-..+++.|.|.+....++......++.+++..++...+
T Consensus 358 ~eeEr~~L~~qL~eqk~~~q~L~h~va~~q~e~e~~a~~~~~~~dsV~~E~h 409 (617)
T PF15070_consen 358 AEEERARLRRQLEEQKVQCQHLAHQVASAQKEPEAEAPAPGTGGDSVPGETH 409 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccCcccCCCCCCccch
No 107
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.73 E-value=81 Score=39.10 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003293 373 DVHAHKLKSLEAQILDLK 390 (833)
Q Consensus 373 e~~ekkLqeLE~ei~~Lk 390 (833)
...+++|..|..++..+.
T Consensus 851 ~~ieq~ls~l~~~~k~~~ 868 (970)
T KOG0946|consen 851 KLIEQKLSNLQEKIKFGN 868 (970)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 335566666665555444
No 108
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=87.59 E-value=31 Score=34.07 Aligned_cols=68 Identities=19% Similarity=0.358 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 378 KLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASR 445 (833)
Q Consensus 378 kLqeLE~ei~~LkkK~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~ 445 (833)
+++.+|.++..+..+.......+....+.-.....|+..|+.|..+-...-.++++-.++++......
T Consensus 43 K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~a 110 (143)
T PF12718_consen 43 KNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKA 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444443333333333333332233336666677777777777777777777777644433
No 109
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=87.27 E-value=1.1e+02 Score=39.86 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003293 332 FGKKIAELEDEKRTVQKERDHLLTEIENL 360 (833)
Q Consensus 332 yekKi~eLE~ei~~LqkErdeLl~eL~~~ 360 (833)
+..++.+.+++++.+..+...+..+|+.+
T Consensus 499 ~~ek~~~~~~~~~~l~~~~~~~~eele~~ 527 (1317)
T KOG0612|consen 499 VEEKLSEEEAKKRKLEALVRQLEEELEDA 527 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554444443
No 110
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=86.95 E-value=21 Score=34.20 Aligned_cols=51 Identities=27% Similarity=0.390 Sum_probs=29.5
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 172 VNRDPMSTEMLKMRQQLEFLQAELCARGGGSSSDEVQVLKERIAWLEAANEDLCRELHEYRSR 234 (833)
Q Consensus 172 vn~d~~~~~i~~l~~~i~~L~~el~~~~~g~~s~~~~~Lkeki~~Le~ene~L~~EL~e~r~r 234 (833)
++-.|....+.+|..+|..+..++ ..++.++..++...+.+..|+..+...
T Consensus 9 ~~~~~~~~~ve~L~s~lr~~E~E~------------~~l~~el~~l~~~r~~l~~Eiv~l~~~ 59 (120)
T PF12325_consen 9 SSGGPSVQLVERLQSQLRRLEGEL------------ASLQEELARLEAERDELREEIVKLMEE 59 (120)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666665554 335556666666666666666554433
No 111
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=86.85 E-value=51 Score=35.80 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003293 536 NVHEVRFDYEKQSQVRAALAEELAVLKQV 564 (833)
Q Consensus 536 ~~~e~~~~le~l~~~R~~L~~el~~Lk~~ 564 (833)
..+++...|.+..++|+.|..++..|..+
T Consensus 163 k~e~L~ekynkeveerkrle~e~k~lq~k 191 (307)
T PF10481_consen 163 KYEELQEKYNKEVEERKRLEAEVKALQAK 191 (307)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 46788999999999999999999998754
No 112
>PRK04863 mukB cell division protein MukB; Provisional
Probab=86.61 E-value=1.4e+02 Score=40.48 Aligned_cols=16 Identities=38% Similarity=0.507 Sum_probs=10.1
Q ss_pred HHHHHHHHHhHHHhhh
Q 003293 608 NSLVAMASQLSEAEER 623 (833)
Q Consensus 608 ~~l~~l~~kl~e~ee~ 623 (833)
+++..+..++.+++-+
T Consensus 513 ~~~~~~~~~~~~l~~~ 528 (1486)
T PRK04863 513 EQLQQLRMRLSELEQR 528 (1486)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 4566666777776553
No 113
>PRK11281 hypothetical protein; Provisional
Probab=86.35 E-value=1.2e+02 Score=39.66 Aligned_cols=42 Identities=14% Similarity=0.091 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003293 523 FQRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQV 564 (833)
Q Consensus 523 ~~~Wle~e~ev~~~~~e~~~~le~l~~~R~~L~~el~~Lk~~ 564 (833)
++.-++.+..+.-.+......++.+.++.......+..+.+.
T Consensus 280 i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~ 321 (1113)
T PRK11281 280 VAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQS 321 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577778888888888888888888888888887777776653
No 114
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=85.13 E-value=50 Score=34.16 Aligned_cols=34 Identities=29% Similarity=0.364 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003293 328 LKQHFGKKIAELEDEKRTVQKERDHLLTEIENLA 361 (833)
Q Consensus 328 lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~ 361 (833)
-.++...+|..|+.+...+..++|.+......+.
T Consensus 96 E~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~ 129 (193)
T PF14662_consen 96 EQQSLVAEIETLQEENGKLLAERDGLKKRSKELA 129 (193)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHH
Confidence 3556667777777777777777777766655553
No 115
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=84.60 E-value=1.4e+02 Score=38.70 Aligned_cols=83 Identities=28% Similarity=0.404 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhcccccccccCCcchHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 153 TLNTLKYANRARNIQNKPIVNRDPMSTEMLKMRQQLEFLQAELCARGGGSSSDEVQVLKERIAWLEAANEDLCRELHEYR 232 (833)
Q Consensus 153 TlsTL~fA~rar~I~n~p~vn~d~~~~~i~~l~~~i~~L~~el~~~~~g~~s~~~~~Lkeki~~Le~ene~L~~EL~e~r 232 (833)
+..|=+|-.+|+.|+-.+++- +....+..+...|...+.-|... .++.. .++.+-...+.|+++|....
T Consensus 1177 ~~rt~rl~~~A~~l~~tGv~g--ay~s~f~~me~kl~~ir~il~~~--svs~~-------~i~~l~~~~~~lr~~l~~~~ 1245 (1758)
T KOG0994|consen 1177 ALRTHRLINRAKELKQTGVLG--AYASRFLDMEEKLEEIRAILSAP--SVSAE-------DIAQLASATESLRRQLQALT 1245 (1758)
T ss_pred HHHHHHHHHHHHHhhhccCch--hhHhHHHHHHHHHHHHHHHhcCC--CccHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 345557888888888877765 33444556666666555544222 12223 33444455566777777777
Q ss_pred HHhHHHHHHHHHhh
Q 003293 233 SRCTDVEQRETDAQ 246 (833)
Q Consensus 233 ~rl~~leq~~~d~q 246 (833)
+++.+.+..+.|..
T Consensus 1246 e~L~~~E~~Lsdi~ 1259 (1758)
T KOG0994|consen 1246 EDLPQEEETLSDIT 1259 (1758)
T ss_pred hhhhhhhhhhhhhh
Confidence 77776666555544
No 116
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=84.28 E-value=21 Score=39.76 Aligned_cols=27 Identities=41% Similarity=0.699 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003293 334 KKIAELEDEKRTVQKERDHLLTEIENL 360 (833)
Q Consensus 334 kKi~eLE~ei~~LqkErdeLl~eL~~~ 360 (833)
..+.+++.++..++.|.+++..+|..+
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~L 69 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEEL 69 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666665555444
No 117
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=83.91 E-value=66 Score=34.52 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 003293 405 KSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQA 468 (833)
Q Consensus 405 k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~eKEi~qLKke~rK~~~e~~kLe~ 468 (833)
..+.+.+.|..+.++|+.....+-.+....-.+|-+....++.++.|++........-|++|+.
T Consensus 56 q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQ 119 (333)
T KOG1853|consen 56 QLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQ 119 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666666666677777777777777766554444444444443
No 118
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=83.88 E-value=41 Score=38.85 Aligned_cols=50 Identities=22% Similarity=0.335 Sum_probs=25.8
Q ss_pred cCCCcchhhhhcccCCCCcceeEEeecCCCCCCHHHHHHHHHHH-HHhhccccccccc
Q 003293 117 PYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYA-NRARNIQNKPIVN 173 (833)
Q Consensus 117 PyRdSkLTrLLqdsLgGns~t~mI~~VSP~~~~~~ETlsTL~fA-~rar~I~n~p~vn 173 (833)
-||.+.-+.+..++= +.++.|..| |+ |.....-|+|. ...+.|.+-.+|.
T Consensus 59 Lyk~n~~~s~~~~~~---~~mLcilaV-P~---~mt~~Dll~F~~~~~~~I~~irivR 109 (493)
T KOG0804|consen 59 LYKKNSHSSLKNASS---STMLCILAV-PA---YMTSHDLLRFCASFIKQISDIRIVR 109 (493)
T ss_pred EEecCcccccccCCC---CcEEEEEec-cc---cccHHHHHHHHHHHhhhhheeEEee
Confidence 477777666655543 334444333 44 33444555553 4445555555555
No 119
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=82.84 E-value=84 Score=39.22 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCc-h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 299 MDKELNELNRRLEEKESEMKLVGGSD-T--AALKQHFGKKIAELEDEKRTVQKERDHLLTEIE 358 (833)
Q Consensus 299 l~~EL~eLnkqLe~KE~e~k~~~~~~-~--~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~ 358 (833)
+..++.++..+++..|..+..|.... . .....-.++++.+++.++...+.++......+.
T Consensus 199 L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~ 261 (754)
T TIGR01005 199 LAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTAD 261 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777776666553210 0 000112336777777777777776666544433
No 120
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=82.75 E-value=19 Score=35.22 Aligned_cols=116 Identities=18% Similarity=0.198 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---CCCcccchhc
Q 003293 645 LLQYMFNSLADARCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSAS---GNLHNSLEHF 721 (833)
Q Consensus 645 ~l~~L~~~~~~~r~~~~~~~~el~e~k~~~~~l~~~l~~~e~q~~~l~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~ 721 (833)
+|.||+..-..-=+....=+.|-.||++++..|++..+-.+.-+..|..-++++|-++---=+.... |...+. .
T Consensus 5 Vl~fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~~~~~~~---~ 81 (134)
T PF08232_consen 5 VLHFLQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKYGTDLNQ---S 81 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc---c
Confidence 6788888877766666666677789999999999999999999999999999988776543333211 111110 0
Q ss_pred cccCCCCCCCCccccccccccccCccCCCcchhhHHhhhhcc
Q 003293 722 ADDTSGPPSPMSVPAQKQLKYTPGIANGSIRESAAFINQNRK 763 (833)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (833)
..+.+........+..+...=.|++.+...+.+-.|+++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~L~~~l~ 123 (134)
T PF08232_consen 82 QKKKSSSSDEELEEDSDEESSSPEIDESKWKKSRQLLRKYLQ 123 (134)
T ss_pred cccccccccccccCCcccccCCCcccHHHHHHHHHHHHHHHH
Confidence 000000111111233333333456666677788888887443
No 121
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.33 E-value=1.4e+02 Score=37.17 Aligned_cols=65 Identities=15% Similarity=0.210 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 380 KSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKAS 444 (833)
Q Consensus 380 qeLE~ei~~LkkK~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~ 444 (833)
.-|+.++.....++.+..+....-.-..+.+..+..|.+.+......+.+++.+...-...|++.
T Consensus 709 ~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~ 773 (970)
T KOG0946|consen 709 DLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKAT 773 (970)
T ss_pred HHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33344443333344443333333334555666666677777766666666664444444444433
No 122
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=82.07 E-value=0.43 Score=59.01 Aligned_cols=18 Identities=33% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 003293 547 QSQVRAALAEELAVLKQV 564 (833)
Q Consensus 547 l~~~R~~L~~el~~Lk~~ 564 (833)
|...-..+..++..|++.
T Consensus 262 LE~en~~l~~Elk~Lr~~ 279 (722)
T PF05557_consen 262 LEKENRRLREELKHLRQS 279 (722)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444455555555553
No 123
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=80.13 E-value=1e+02 Score=34.10 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003293 337 AELEDEKRTVQKERDHLL 354 (833)
Q Consensus 337 ~eLE~ei~~LqkErdeLl 354 (833)
.+|.+++..+-.+||+|.
T Consensus 30 ~El~~~~~~~~ekRdeln 47 (294)
T COG1340 30 DELRKEASELAEKRDELN 47 (294)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 124
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=80.07 E-value=32 Score=38.42 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003293 337 AELEDEKRTVQKERDHLLTEIE 358 (833)
Q Consensus 337 ~eLE~ei~~LqkErdeLl~eL~ 358 (833)
..|+.++..+++|+|....=|.
T Consensus 12 ~~l~~~~~~~~~E~~~Y~~fL~ 33 (314)
T PF04111_consen 12 EQLDKQLEQAEKERDTYQEFLK 33 (314)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555544433
No 125
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=80.05 E-value=23 Score=43.95 Aligned_cols=28 Identities=36% Similarity=0.568 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 332 FGKKIAELEDEKRTVQKERDHLLTEIEN 359 (833)
Q Consensus 332 yekKi~eLE~ei~~LqkErdeLl~eL~~ 359 (833)
+..++..|+.++..++.+.+.|..+|..
T Consensus 508 L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 508 LQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777777777777777765
No 126
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=80.02 E-value=1.4e+02 Score=35.73 Aligned_cols=28 Identities=39% Similarity=0.303 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 003293 441 WKASREKELLQLRKEGRRNEYERHKLQA 468 (833)
Q Consensus 441 ~k~~~eKEi~qLKke~rK~~~e~~kLe~ 468 (833)
-++..++.+.+|+++..+.+.|+.+|+.
T Consensus 288 k~~~~~~~l~~l~~Eie~kEeE~e~lq~ 315 (581)
T KOG0995|consen 288 KKQHMEKKLEMLKSEIEEKEEEIEKLQK 315 (581)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777788887777777766544
No 127
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=79.69 E-value=85 Score=32.96 Aligned_cols=79 Identities=23% Similarity=0.465 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Q 003293 327 ALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQ-----ENQVQLLK 401 (833)
Q Consensus 327 ~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLqeLE~ei~~LkkK~-----~~q~~llk 401 (833)
.+-..|..++.+|+..+..-+++...+..+|..+. ....+++..+..|+.|+.++...+... ..+.+.+.
T Consensus 40 ~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~-----~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~ 114 (206)
T PF14988_consen 40 ELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALK-----EFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQ 114 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888888888888887663 346677777888888888888776432 22555566
Q ss_pred HHHhHHHHH
Q 003293 402 QKQKSDEAA 410 (833)
Q Consensus 402 ~K~k~E~~i 410 (833)
.|...+.++
T Consensus 115 EK~~LEke~ 123 (206)
T PF14988_consen 115 EKARLEKEA 123 (206)
T ss_pred HHHHHHHHH
Confidence 665555544
No 128
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=79.58 E-value=33 Score=41.11 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003293 332 FGKKIAELEDEKRTVQKERDHLL 354 (833)
Q Consensus 332 yekKi~eLE~ei~~LqkErdeLl 354 (833)
|.+.+..++..+..++.|...|.
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~ 442 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELK 442 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 129
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.10 E-value=1.5e+02 Score=35.37 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003293 325 TAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENL 360 (833)
Q Consensus 325 ~~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~ 360 (833)
+....++.+..+...+.+....+.+.|+|+.-+...
T Consensus 419 ~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkev 454 (654)
T KOG4809|consen 419 FADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEV 454 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778888888888899999999999987655544
No 130
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=78.74 E-value=35 Score=35.23 Aligned_cols=86 Identities=27% Similarity=0.434 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 003293 334 KKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRL 413 (833)
Q Consensus 334 kKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLqeLE~ei~~LkkK~~~q~~llk~K~k~E~~ik~L 413 (833)
.++..++.++..+.+.+.++...|-.+...-.....++.+ ....|..|+.++..|+.++......++.+.+. +..|
T Consensus 74 ~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~-~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~---~e~l 149 (194)
T PF08614_consen 74 QKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSE-KERRLAELEAELAQLEEKIKDLEEELKEKNKA---NEIL 149 (194)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred cccccccccccccccccccccccccccccccchhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 4445555555555555555554444332211111122222 34555555666665555555443333333332 2234
Q ss_pred HHHHHHHHHH
Q 003293 414 QDEIQFIKAQ 423 (833)
Q Consensus 414 ~~EIq~mK~q 423 (833)
+.|+..+.-+
T Consensus 150 ~DE~~~L~l~ 159 (194)
T PF08614_consen 150 QDELQALQLQ 159 (194)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 131
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=78.58 E-value=0.65 Score=57.33 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 330 QHFGKKIAELEDEKRTVQKERDHLL 354 (833)
Q Consensus 330 q~yekKi~eLE~ei~~LqkErdeLl 354 (833)
..|..++..++.++..|+.+.++|.
T Consensus 263 ~d~~~~~e~le~ei~~L~q~~~eL~ 287 (713)
T PF05622_consen 263 DDLKIELEELEKEIDELRQENEELQ 287 (713)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555554443
No 132
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=78.27 E-value=2.2e+02 Score=36.96 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHH
Q 003293 457 RRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLE 496 (833)
Q Consensus 457 rK~~~e~~kLe~~~~kQ~~VLkRKtEEa~aa~kRLK~~le 496 (833)
-..+.....|+...++-...|.+++++..++..|-+.+.+
T Consensus 1657 ~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~ 1696 (1758)
T KOG0994|consen 1657 LSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRT 1696 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 3333444467777778888888999988888877654443
No 133
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=78.01 E-value=92 Score=32.41 Aligned_cols=37 Identities=16% Similarity=0.343 Sum_probs=19.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 404 QKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQ 440 (833)
Q Consensus 404 ~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~ 440 (833)
.+...++..+...++.-...-..|.+++.-...-|+.
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~r 157 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRR 157 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3444445555555555555555555555555555543
No 134
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=77.87 E-value=1.2e+02 Score=33.73 Aligned_cols=34 Identities=24% Similarity=0.186 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003293 208 QVLKERIAWLEAANEDLCRELHEYRSRCTDVEQR 241 (833)
Q Consensus 208 ~~Lkeki~~Le~ene~L~~EL~e~r~rl~~leq~ 241 (833)
+.|..++..|...|+.+..+|....+.+.++...
T Consensus 86 qsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHe 119 (306)
T PF04849_consen 86 QSLLEQNQDLSERNEALEEQLGAALEQVEQLRHE 119 (306)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777788888888888777777766654
No 135
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=76.99 E-value=46 Score=29.60 Aligned_cols=48 Identities=25% Similarity=0.329 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHH
Q 003293 372 QDVHAHKLKSLEAQILDLKKKQEN-QVQLLKQKQKSDEAAKRLQDEIQF 419 (833)
Q Consensus 372 ~e~~ekkLqeLE~ei~~LkkK~~~-q~~llk~K~k~E~~ik~L~~EIq~ 419 (833)
.++|+.+++.--.++..++.+.-+ ...-.++|.+.|++|.+|+.+|..
T Consensus 27 ~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 27 KDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566655555555555544443 223345666667777777776654
No 136
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=76.28 E-value=1.3e+02 Score=33.44 Aligned_cols=67 Identities=19% Similarity=0.306 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHhhhhHHHHHHHHHHHHHHHhHhhhhhHHHHH
Q 003293 416 EIQFIKAQKVQLQHRIKQEAEQFRQWKASREK--EL-LQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAM 486 (833)
Q Consensus 416 EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~eK--Ei-~qLKke~rK~~~e~~kLe~~~~kQ~~VLkRKtEEa~a 486 (833)
.+..+..+-..|-.++.-=.++|........+ ++ ...|.+..+.-..+.+|+.. ...+++|.|....
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE----~~~~k~k~e~~n~ 272 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKE----NQTWKSKWEKSNK 272 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhH
Confidence 88999999999999999999999999887765 33 34777777777777766543 4567777775544
No 137
>PRK09039 hypothetical protein; Validated
Probab=76.18 E-value=1.4e+02 Score=33.71 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=25.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 295 LQNSMDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERD 351 (833)
Q Consensus 295 ~Q~~l~~EL~eLnkqLe~KE~e~k~~~~~~~~~lkq~yekKi~eLE~ei~~LqkErd 351 (833)
.|-=|..++..++.+|...+.++.. +..+-.........|+.++..++.+.+
T Consensus 40 ~q~fLs~~i~~~~~eL~~L~~qIa~-----L~e~L~le~~~~~~l~~~l~~l~~~l~ 91 (343)
T PRK09039 40 AQFFLSREISGKDSALDRLNSQIAE-----LADLLSLERQGNQDLQDSVANLRASLS 91 (343)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444566666666666666665533 222333333444444444444444333
No 138
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=75.84 E-value=85 Score=30.89 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 330 QHFGKKIAELEDEKRTVQKERDHLLTEIE 358 (833)
Q Consensus 330 q~yekKi~eLE~ei~~LqkErdeLl~eL~ 358 (833)
+..-.....|..++..+..+.+.|...+.
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~ 76 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDIERLQNDVE 76 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33334455556666666666666654443
No 139
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=75.58 E-value=1e+02 Score=32.88 Aligned_cols=52 Identities=21% Similarity=0.416 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 335 KIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQ 398 (833)
Q Consensus 335 Ki~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLqeLE~ei~~LkkK~~~q~~ 398 (833)
+|.++..+...+++-+.+|..+++.... -++.|.++..++..|......|..
T Consensus 2 ~i~~ir~K~~~lek~k~~i~~e~~~~e~------------ee~~L~e~~kE~~~L~~Er~~h~e 53 (230)
T PF10146_consen 2 KIKEIRNKTLELEKLKNEILQEVESLEN------------EEKCLEEYRKEMEELLQERMAHVE 53 (230)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777788777765521 245666777777766655444433
No 140
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=75.25 E-value=1.4e+02 Score=33.29 Aligned_cols=49 Identities=20% Similarity=0.373 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 407 DEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKE 455 (833)
Q Consensus 407 E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~eKEi~qLKke 455 (833)
+.++..+...|.....++..+..++.+-.......+.--.+||..|+.+
T Consensus 231 ~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~ 279 (312)
T smart00787 231 EEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQ 279 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4456667777777777777777777766665555555555666666654
No 141
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=74.98 E-value=2.4e+02 Score=35.63 Aligned_cols=87 Identities=17% Similarity=0.170 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHhhhhhHHHHHHH
Q 003293 412 RLQDEIQFIKAQKVQLQHRI---KQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMAT 488 (833)
Q Consensus 412 ~L~~EIq~mK~qKv~L~kkm---keE~ek~r~~k~~~eKEi~qLKke~rK~~~e~~kLe~~~~kQ~~VLkRKtEEa~aa~ 488 (833)
+|+.|+..+.+.+.++.+-. .+-..++-.|+..-++ +...=.+.+....++.+-=.+-.+|..+-.--+.++...+
T Consensus 390 qLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~k-lkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~ 468 (980)
T KOG0980|consen 390 QLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEK-LKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEEN 468 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 77888888888888877766 3333333333333332 1111112222222222211222344444444455666666
Q ss_pred HHHHHHHHhhh
Q 003293 489 KRLKELLESRK 499 (833)
Q Consensus 489 kRLK~~le~rK 499 (833)
.-|-+.++...
T Consensus 469 ~~L~d~le~~~ 479 (980)
T KOG0980|consen 469 TNLNDQLEELQ 479 (980)
T ss_pred HHHHHHHHHHH
Confidence 66666666544
No 142
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=74.84 E-value=1.5e+02 Score=33.22 Aligned_cols=51 Identities=24% Similarity=0.320 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 337 AELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQEN 395 (833)
Q Consensus 337 ~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLqeLE~ei~~LkkK~~~ 395 (833)
..|+.....++.+...|...++.+ ..+......+...|+.++..|+....+
T Consensus 152 ~~L~~~~~~L~~D~~~L~~~~~~l--------~~~~~~l~~~~~~L~~e~~~Lk~~~~e 202 (325)
T PF08317_consen 152 EGLEENLELLQEDYAKLDKQLEQL--------DELLPKLRERKAELEEELENLKQLVEE 202 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444433322 334444566677777777777765443
No 143
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=74.51 E-value=1.6e+02 Score=35.71 Aligned_cols=99 Identities=20% Similarity=0.211 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhHH
Q 003293 383 EAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREK-ELLQLRKEGRRNEY 461 (833)
Q Consensus 383 E~ei~~LkkK~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~eK-Ei~qLKke~rK~~~ 461 (833)
=.++.+||-|+. .+.+.+-..|++.+.-+++|+.+.+-+|..+-+-+- ++ .|+..-.| |+++|+.+......
T Consensus 180 maevSeLKLklt---alEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erl---qy-e~klkstk~e~a~L~Eq~~eK~~ 252 (861)
T KOG1899|consen 180 MAEVSELKLKLT---ALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERL---QY-ETKLKSTKGEMAPLREQRSEKND 252 (861)
T ss_pred HHHHHHhHHHHH---HHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HH-HhhcccccchhhhHHHHHhhhhh
Confidence 344445554433 466777778888888889999888777776544332 22 23333343 78888877776666
Q ss_pred HHHHHHHHH-----------HHHHhHhhhhhHHHHHHH
Q 003293 462 ERHKLQALN-----------QRQKLVLQRKTEEAAMAT 488 (833)
Q Consensus 462 e~~kLe~~~-----------~kQ~~VLkRKtEEa~aa~ 488 (833)
++.+|...- -.+.+-||.-.|+...+|
T Consensus 253 e~~rl~~~lv~~~~~d~e~~~~rd~~lk~a~eslm~an 290 (861)
T KOG1899|consen 253 EEMRLLRTLVQRLMADGEHKSLRDNTLKNALESLMRAN 290 (861)
T ss_pred HHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHhhc
Confidence 665554332 123334555555555554
No 144
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=74.42 E-value=1.3e+02 Score=32.38 Aligned_cols=21 Identities=38% Similarity=0.433 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003293 426 QLQHRIKQEAEQFRQWKASRE 446 (833)
Q Consensus 426 ~L~kkmkeE~ek~r~~k~~~e 446 (833)
.-++++|+|...+|+.-+-++
T Consensus 164 esvqRLkdEardlrqelavr~ 184 (333)
T KOG1853|consen 164 ESVQRLKDEARDLRQELAVRT 184 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888877544444
No 145
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=73.61 E-value=1.3e+02 Score=32.11 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 003293 334 KKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLK 390 (833)
Q Consensus 334 kKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLqeLE~ei~~Lk 390 (833)
.-|.++..++..|..||.....+|..+ ...++.||.-|...+
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI---------------~~DIn~lE~iIkqa~ 73 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQI---------------NQDINTLENIIKQAE 73 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHH
Confidence 556777777777777777777777654 234455666666655
No 146
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=73.44 E-value=2.2e+02 Score=34.54 Aligned_cols=147 Identities=20% Similarity=0.199 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHhHHHhhh---------hhc--cc---cccccc-cccCH---HHHHHHHHHHHHH
Q 003293 591 ARMARISSLENMLSISSNSLVAMASQLSEAEER---------DRL--FT---NRGRWN-QLRSM---ADAKNLLQYMFNS 652 (833)
Q Consensus 591 ~~~aqI~~Le~~~~~~~~~l~~l~~kl~e~ee~---------~r~--~~---~~~rw~-~irs~---~eAk~~l~~L~~~ 652 (833)
.|.+||..|++.++...+.|..|-.++-.--+. ++. |+ ..+.|+ +..++ --+|+ ..|.+.
T Consensus 314 ~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~kn--r~lq~e 391 (629)
T KOG0963|consen 314 KHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKN--RKLQNE 391 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhhcCCcccccccccccchHHHHHHHHH--hhhhHH
Confidence 356666666666666666666655554432111 111 22 233474 22222 11111 456666
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcccchhccccCCCCCCCC
Q 003293 653 LADARCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSASGNLHNSLEHFADDTSGPPSPM 732 (833)
Q Consensus 653 ~~~~r~~~~~~~~el~e~k~~~~~l~~~l~~~e~q~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (833)
...-|.+......++.++..+..++. ++-.+...-...+++-+. .. +. ++---.+.+.-.+.++-
T Consensus 392 ~a~Lr~~n~~~~~~~~~~~~~~~el~-------~~~~~~ke~i~klE~dl~----~~---~~-~~~~~~~~~~~~~~~~~ 456 (629)
T KOG0963|consen 392 NASLRVANSGLSGRITELSKKGEELE-------AKATEQKELIAKLEQDLL----KV---QV-SPPAEGATARREEGSGQ 456 (629)
T ss_pred HHHHhccccccchhHHHHHhhhhhhH-------HHHHHHHHHHHHHHhhHh----hc---cc-CCCCCcchhhhcccCCc
Confidence 66667666666666666665555544 222222222222222222 11 10 11112233334456677
Q ss_pred ccccccccccccCccCCCcchh
Q 003293 733 SVPAQKQLKYTPGIANGSIRES 754 (833)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~ 754 (833)
++|.+...+++|-..++.+-..
T Consensus 457 ~v~e~s~~~~~p~~~~~~~~s~ 478 (629)
T KOG0963|consen 457 PVPESSIMGGGPSLPNGGVLSR 478 (629)
T ss_pred CCCcccccCCCCCccccccccc
Confidence 7888888888887777766544
No 147
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=73.31 E-value=1.9e+02 Score=33.81 Aligned_cols=49 Identities=24% Similarity=0.415 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 003293 414 QDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYE 462 (833)
Q Consensus 414 ~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~eKEi~qLKke~rK~~~e 462 (833)
..||++|..-|..|-+....-...+...|..++.|.+.|..+-.|++.+
T Consensus 459 eeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~eke 507 (527)
T PF15066_consen 459 EEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKE 507 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555555555556666666666666555554433
No 148
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=73.17 E-value=1.7e+02 Score=33.29 Aligned_cols=32 Identities=38% Similarity=0.581 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 003293 325 TAALKQHFGKKIAEL----EDEKRTVQKERDHLLTE 356 (833)
Q Consensus 325 ~~~lkq~yekKi~eL----E~ei~~LqkErdeLl~e 356 (833)
...|-..+.++|.+| +.++..|+.|+|.|+++
T Consensus 343 fAaMEetHQkkiEdLQRqHqRELekLreEKdrLLAE 378 (593)
T KOG4807|consen 343 FAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAE 378 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 466778888899888 45788899999999876
No 149
>PRK01156 chromosome segregation protein; Provisional
Probab=72.95 E-value=2.7e+02 Score=35.45 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 003293 376 AHKLKSLEAQILDLKK 391 (833)
Q Consensus 376 ekkLqeLE~ei~~Lkk 391 (833)
..++..++.++..|+.
T Consensus 415 ~~~~~~l~~~i~~l~~ 430 (895)
T PRK01156 415 NVKLQDISSKVSSLNQ 430 (895)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 150
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=72.71 E-value=95 Score=30.03 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003293 413 LQDEIQFIKAQKVQLQHRIK 432 (833)
Q Consensus 413 L~~EIq~mK~qKv~L~kkmk 432 (833)
++.+|..++.........+.
T Consensus 71 ~~~~~~~l~~~~~~a~~~l~ 90 (132)
T PF07926_consen 71 LQQEINELKAEAESAKAELE 90 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334433333333333
No 151
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=72.42 E-value=2.6e+02 Score=34.90 Aligned_cols=60 Identities=22% Similarity=0.314 Sum_probs=31.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003293 296 QNSMDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENL 360 (833)
Q Consensus 296 Q~~l~~EL~eLnkqLe~KE~e~k~~~~~~~~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~ 360 (833)
...|...+.+|.-++.+...++.. +..-.........+|......++.+|..|..++..+
T Consensus 29 E~~~~~~i~~l~~elk~~~~~~~~-----~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~ 88 (717)
T PF09730_consen 29 EAYLQQRILELENELKQLRQELSN-----VQAENERLSQLNQELRKECEDLELERKRLREEIKEY 88 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444554444444433322 223344555666666666666777776666666544
No 152
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=71.90 E-value=63 Score=34.89 Aligned_cols=47 Identities=19% Similarity=0.348 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 368 TQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRI 431 (833)
Q Consensus 368 ~~KL~e~~ekkLqeLE~ei~~LkkK~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkm 431 (833)
....++.+++|..+||.++..++. .+..|+.||..+++--++|-.|+
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~-----------------~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQ-----------------TISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788899999999999988774 34578889999999999988776
No 153
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=71.00 E-value=34 Score=40.04 Aligned_cols=61 Identities=15% Similarity=0.130 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003293 648 YMFNSLADARCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARS 709 (833)
Q Consensus 648 ~L~~~~~~~r~~~~~~~~el~e~k~~~~~l~~~l~~~e~q~~~l~~~~~~~~~~~~~~l~~~ 709 (833)
.+|+..+ ...++.+-+....|++.++..+...+..+..+.+++++.++.++.++.-|-...
T Consensus 60 ~~FddkV-nqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 60 TTFDDKV-RQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred chhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344333 333444455556666667766665555555666666666666666666655443
No 154
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=70.52 E-value=1.4 Score=54.49 Aligned_cols=24 Identities=42% Similarity=0.638 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 332 FGKKIAELEDEKRTVQKERDHLLT 355 (833)
Q Consensus 332 yekKi~eLE~ei~~LqkErdeLl~ 355 (833)
...++..|+.+...+..+++.|..
T Consensus 396 L~ek~~~l~~eke~l~~e~~~L~e 419 (713)
T PF05622_consen 396 LEEKLEALEEEKERLQEERDSLRE 419 (713)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666665543
No 155
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=70.49 E-value=1.2e+02 Score=30.09 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003293 334 KKIAELEDEKRTVQKERDHLL 354 (833)
Q Consensus 334 kKi~eLE~ei~~LqkErdeLl 354 (833)
.+|..|+.++..++.++..+.
T Consensus 24 ~~v~~LEreLe~~q~~~e~~~ 44 (140)
T PF10473_consen 24 DHVESLERELEMSQENKECLI 44 (140)
T ss_pred HHHHHHHHHHHHHHHhHHHHH
Confidence 344444444444444444333
No 156
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=69.98 E-value=1.4e+02 Score=34.81 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003293 427 LQHRIKQEAEQFRQWKASREKELLQLRKEGRRN 459 (833)
Q Consensus 427 L~kkmkeE~ek~r~~k~~~eKEi~qLKke~rK~ 459 (833)
...++++..++........+..|..|+.+.|--
T Consensus 415 w~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 415 WRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 334444444455555555555565666555543
No 157
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=69.53 E-value=83 Score=37.90 Aligned_cols=58 Identities=19% Similarity=0.294 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 334 KKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQ 396 (833)
Q Consensus 334 kKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLqeLE~ei~~LkkK~~~q 396 (833)
..+.+|+.++..++.++..|..+|..... ... .+....+.+..++.+|..|++++.++
T Consensus 436 ~e~~~L~~~~ee~k~eie~L~~~l~~~~r---~~~--~~~~~~rei~~~~~~I~~L~~~L~e~ 493 (652)
T COG2433 436 EENSELKRELEELKREIEKLESELERFRR---EVR--DKVRKDREIRARDRRIERLEKELEEK 493 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH--HHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443311 111 12223566777777777777766654
No 158
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=68.18 E-value=1.8e+02 Score=31.27 Aligned_cols=80 Identities=29% Similarity=0.394 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003293 332 FGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAK 411 (833)
Q Consensus 332 yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLqeLE~ei~~LkkK~~~q~~llk~K~k~E~~ik 411 (833)
..+++..+..+...+..+.+.|..+++.+. ...++++..+..++.++..|+....
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~--------~~~~~l~~~v~~q~~el~~L~~qi~----------------- 94 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLE--------VYNEQLERQVASQEQELASLEQQIE----------------- 94 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 345555555555555555555555554441 1122234444444455554443222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 412 RLQDEIQFIKAQKVQLQHRIKQEAEQFRQ 440 (833)
Q Consensus 412 ~L~~EIq~mK~qKv~L~kkmkeE~ek~r~ 440 (833)
+|...+..-+-++.+|-+..+.|=.
T Consensus 95 ----~~~~~~~~l~p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 95 ----QIEETRQELVPLMEQMIDELEQFVE 119 (251)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2334555566677777777766554
No 159
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=67.61 E-value=1.7e+02 Score=30.80 Aligned_cols=72 Identities=21% Similarity=0.285 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 375 HAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKEL 449 (833)
Q Consensus 375 ~ekkLqeLE~ei~~LkkK~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~eKEi 449 (833)
....|-+.+..+..++.....-......+...+.+|..|+.++..+...+....+.|+. +|=..|+..++++
T Consensus 52 Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~---qfl~EK~~LEke~ 123 (206)
T PF14988_consen 52 LQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAES---QFLQEKARLEKEA 123 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 33445555555556666666666677778888888888888888888888777777654 5666666666554
No 160
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=67.28 E-value=2.4e+02 Score=32.56 Aligned_cols=97 Identities=8% Similarity=0.096 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---chhhhhHH
Q 003293 299 MDKELNELNRRLEEKESEMKLVGGS----DTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASN---SDGQTQKL 371 (833)
Q Consensus 299 l~~EL~eLnkqLe~KE~e~k~~~~~----~~~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~---~~~~~~KL 371 (833)
++.++.++..+++..|..+..|... +...-...-..++.+|+.++..++.++.++...+...... ..-.....
T Consensus 176 l~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (444)
T TIGR03017 176 FVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSGKDALPEVIANPI 255 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhhcChH
Confidence 5566667777777766666554321 1110011112577888888888888776665554322110 00001111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 372 QDVHAHKLKSLEAQILDLKKKQEN 395 (833)
Q Consensus 372 ~e~~ekkLqeLE~ei~~LkkK~~~ 395 (833)
-..++.++.+++.++..+...+.+
T Consensus 256 i~~l~~~l~~le~~l~~l~~~y~~ 279 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQRLGP 279 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 234678888888888888776655
No 161
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=65.52 E-value=3.3e+02 Score=33.49 Aligned_cols=47 Identities=13% Similarity=0.242 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 003293 416 EIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYE 462 (833)
Q Consensus 416 EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~eKEi~qLKke~rK~~~e 462 (833)
++.........+...++.+...+-..+...++++..++.+.......
T Consensus 238 ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~ 284 (650)
T TIGR03185 238 ELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQ 284 (650)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444333333333334444444444443333333
No 162
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=65.25 E-value=3.2e+02 Score=33.15 Aligned_cols=155 Identities=18% Similarity=0.194 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH------
Q 003293 375 HAHKLKSLEAQILDLKK--KQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRI----KQEAEQFRQWK------ 442 (833)
Q Consensus 375 ~ekkLqeLE~ei~~Lkk--K~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkm----keE~ek~r~~k------ 442 (833)
.+++|..+|.+...-.. ..+++.+.-..-.+.+..+..|..-+..++.--..+..-+ .+=..-++...
T Consensus 170 le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~ 249 (569)
T PRK04778 170 LEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHL 249 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCC
Confidence 34444555544444432 2222444444444555555666666666655444444322 22222233322
Q ss_pred --HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCCCcch
Q 003293 443 --ASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESRKSSARENSAVTNGNLTNGQSNE 520 (833)
Q Consensus 443 --~~~eKEi~qLKke~rK~~~e~~kLe~~~~kQ~~VLkRKtEEa~aa~kRLK~~le~rK~~~r~~~~~~~~~~~~~~~~~ 520 (833)
...+.+|..++++.......+..+ ..+++.+.+..+.+.++.=...
T Consensus 250 ~~~~i~~~i~~l~~~i~~~~~~l~~l-------------~l~~~~~~~~~i~~~Id~Lyd~------------------- 297 (569)
T PRK04778 250 DHLDIEKEIQDLKEQIDENLALLEEL-------------DLDEAEEKNEEIQERIDQLYDI------------------- 297 (569)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhc-------------ChHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 234566666666665555554444 3344444444443333211100
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003293 521 KSFQRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQ 563 (833)
Q Consensus 521 ~~~~~Wle~e~ev~~~~~e~~~~le~l~~~R~~L~~el~~Lk~ 563 (833)
+.+=+.-...|--....+...++...+.-..|..++..|++
T Consensus 298 --lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~ 338 (569)
T PRK04778 298 --LEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQ 338 (569)
T ss_pred --HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111111122234455666677777777777777777765
No 163
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=64.64 E-value=2.1e+02 Score=30.86 Aligned_cols=15 Identities=40% Similarity=0.594 Sum_probs=5.9
Q ss_pred HHHHHHHHhhhhHHH
Q 003293 448 ELLQLRKEGRRNEYE 462 (833)
Q Consensus 448 Ei~qLKke~rK~~~e 462 (833)
+|.+|.....+...+
T Consensus 90 ~i~~l~ee~~~ke~E 104 (246)
T PF00769_consen 90 EIARLEEESERKEEE 104 (246)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444333
No 164
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.29 E-value=75 Score=27.49 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=35.1
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 660 LWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVA 703 (833)
Q Consensus 660 ~~~~~~el~e~k~~~~~l~~~l~~~e~q~~~l~~~~~~~~~~~~ 703 (833)
..-++++|.|+|++.+.|....+.+.-+++.|..+...+.++-+
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~ 63 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQN 63 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588999999999999998888777777778887777666543
No 165
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=63.19 E-value=1e+02 Score=33.94 Aligned_cols=12 Identities=25% Similarity=0.360 Sum_probs=4.3
Q ss_pred cccCCCcchhhh
Q 003293 115 HVPYRDSKLTRL 126 (833)
Q Consensus 115 ~iPyRdSkLTrL 126 (833)
.||-=.|..+.+
T Consensus 25 ~vP~iesa~~~~ 36 (297)
T PF02841_consen 25 SVPCIESAWQAV 36 (297)
T ss_dssp S--BHHHHHHHH
T ss_pred CCCCchHHHHHH
Confidence 355444444443
No 166
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=63.01 E-value=1.8e+02 Score=33.60 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=16.7
Q ss_pred hhcccccCCchhhHHhhhcc-CCCccceecccc
Q 003293 760 QNRKRVPLGQLSMKKLAALG-QGGKLWRWKRSH 791 (833)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 791 (833)
-++-.+.|| ..+++.| ..|.+.-|-...
T Consensus 390 wtrvvfSpd----~~YvaAGS~dgsv~iW~v~t 418 (459)
T KOG0288|consen 390 WTRVVFSPD----GSYVAAGSADGSVYIWSVFT 418 (459)
T ss_pred cceeEECCC----CceeeeccCCCcEEEEEccC
Confidence 344444444 4455555 788888886654
No 167
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=63.00 E-value=2.9e+02 Score=34.96 Aligned_cols=21 Identities=29% Similarity=0.272 Sum_probs=12.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhh
Q 003293 478 QRKTEEAAMATKRLKELLESR 498 (833)
Q Consensus 478 kRKtEEa~aa~kRLK~~le~r 498 (833)
..-+.+..+..+||.+..+++
T Consensus 1127 ~s~i~~~V~e~krL~~~~~k~ 1147 (1189)
T KOG1265|consen 1127 SSNIKEFVEERKRLAEKQSKR 1147 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334556666677776666543
No 168
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=62.55 E-value=2.1e+02 Score=30.16 Aligned_cols=123 Identities=22% Similarity=0.299 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003293 332 FGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAK 411 (833)
Q Consensus 332 yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLqeLE~ei~~LkkK~~~q~~llk~K~k~E~~ik 411 (833)
.++.......++..+..|+|.+...|.++...-. .|-..|++- ..-|..+++ .-..|-+.-......+.
T Consensus 60 ~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfs----dl~~ryek~----K~vi~~~k~---NEE~Lkk~~~ey~~~l~ 128 (207)
T PF05010_consen 60 KQKQKELSEAEIQKLLKERDQAYADLNSLEKSFS----DLHKRYEKQ----KEVIEGYKK---NEETLKKCIEEYEERLK 128 (207)
T ss_pred HHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHH----HHHHHHHHH----HHHHHHHHH---hHHHHHHHHHHHHHHHH
Confidence 3344444566777888888888887776643222 122212111 111111111 00111112222233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 003293 412 RLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQA 468 (833)
Q Consensus 412 ~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~eKEi~qLKke~rK~~~e~~kLe~ 468 (833)
......+.|| ..-..+|..-.+.....+....-|+..|+-..||.+..+..|+.
T Consensus 129 ~~eqry~aLK---~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~ 182 (207)
T PF05010_consen 129 KEEQRYQALK---AHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEE 182 (207)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333 33334454555555555566667777788888888777777654
No 169
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=62.09 E-value=2.9e+02 Score=31.67 Aligned_cols=83 Identities=27% Similarity=0.307 Sum_probs=44.2
Q ss_pred hhhhHHHHHHHHhccccCCCCC-ccccCCCcchhhhhcccCCCC-cceeEEeecCCCCCCHHHHHHHHHHHHHhhccccc
Q 003293 92 RGLLALGNVISALGDDKKRKEG-VHVPYRDSKLTRLLQDSLGGN-SRTVMIACISPADINAEETLNTLKYANRARNIQNK 169 (833)
Q Consensus 92 ~SL~aLg~vI~aL~~~~~~~~~-~~iPyRdSkLTrLLqdsLgGn-s~t~mI~~VSP~~~~~~ETlsTL~fA~rar~I~n~ 169 (833)
.+.+.||-||..++|.-..+-+ .|. ..||=. -.|.+|++|-.+.--..-||..|=.+++--
T Consensus 7 ~~vlvLgGVIA~~gD~ig~kvGkarL------------rlF~LRPkqTAvlvtvltG~liSA~tLailf~~~~~l----- 69 (499)
T COG4372 7 PFVLVLGGVIAYAGDTIGKKVGKARL------------RLFGLRPKQTAVLVTVLTGMLISAATLAILFLLNRNL----- 69 (499)
T ss_pred HHHHHHHhHHHHHhhHHHhhhhHHHH------------hHhccCcccceeehhhhhcchhhHHHHHHHHHhhhhH-----
Confidence 4578899999999884321111 111 112222 367788888766554455665554443311
Q ss_pred ccccCCcchHHHHHHHHHHHHHHHHHh
Q 003293 170 PIVNRDPMSTEMLKMRQQLEFLQAELC 196 (833)
Q Consensus 170 p~vn~d~~~~~i~~l~~~i~~L~~el~ 196 (833)
-.....+..++.+|..++.+|.
T Consensus 70 -----r~gVfqlddi~~qlr~~rtel~ 91 (499)
T COG4372 70 -----RSGVFQLDDIRPQLRALRTELG 91 (499)
T ss_pred -----HhhhhhHHHHHHHHHHHHHHHH
Confidence 1112334455666666666653
No 170
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=62.06 E-value=79 Score=32.60 Aligned_cols=105 Identities=18% Similarity=0.159 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHhHHHhhhhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Q 003293 592 RMARISSLENMLSISSNSLVAMASQLSEAEERDRLFTNRGRWNQLRSMADAKNLLQYMFNSLADARCQLWEKDIEIKEMK 671 (833)
Q Consensus 592 ~~aqI~~Le~~~~~~~~~l~~l~~kl~e~ee~~r~~~~~~rw~~irs~~eAk~~l~~L~~~~~~~r~~~~~~~~el~e~k 671 (833)
....+..+..++....-.-..+++++.+....... --..+.+....+..|-.........+..++.+|++..
T Consensus 72 le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~--------l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~ 143 (194)
T PF08614_consen 72 LEQKLAKLQEELAELYRSKGELAQQLVELNDELQE--------LEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKN 143 (194)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccch--------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444444555555554332211 1112222333333333333333444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 672 EQLKELVGLLRQSEVRRKEVEEELKLREQAVAI 704 (833)
Q Consensus 672 ~~~~~l~~~l~~~e~q~~~l~~~~~~~~~~~~~ 704 (833)
..+..+.+.+.-+..++-.++..+..++++..-
T Consensus 144 k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~ 176 (194)
T PF08614_consen 144 KANEILQDELQALQLQLNMLEEKLRKLEEENRE 176 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444333
No 171
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=61.36 E-value=1.9e+02 Score=29.26 Aligned_cols=118 Identities=22% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhh
Q 003293 291 EHTLLQNSMDKELNELNRRLEEKESEMKLVGGSDTAALK---QHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQ 367 (833)
Q Consensus 291 E~~~~Q~~l~~EL~eLnkqLe~KE~e~k~~~~~~~~~lk---q~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~ 367 (833)
+....-..+...+..+..+|..++..-..+.-.|+..++ ++|..+|.+-..++..+..-.-...+.|...
T Consensus 10 ~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~------- 82 (177)
T PF13870_consen 10 KLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHV------- 82 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 368 TQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQ 433 (833)
Q Consensus 368 ~~KL~e~~ekkLqeLE~ei~~LkkK~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmke 433 (833)
+.++..+..++..++..+... +..+.+++.++...+.++..+.+....
T Consensus 83 --------keKl~~~~~~~~~l~~~l~~~----------~~~~~~~r~~l~~~k~~r~k~~~~~~~ 130 (177)
T PF13870_consen 83 --------KEKLHFLSEELERLKQELKDR----------EEELAKLREELYRVKKERDKLRKQNKK 130 (177)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 172
>PRK10884 SH3 domain-containing protein; Provisional
Probab=60.59 E-value=1.4e+02 Score=31.49 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 334 KKIAELEDEKRTVQKERDHLLTEI 357 (833)
Q Consensus 334 kKi~eLE~ei~~LqkErdeLl~eL 357 (833)
+++.+..+.+..|+.+.++|..++
T Consensus 125 ~~~~~~~~~~~~L~~~n~~L~~~l 148 (206)
T PRK10884 125 QKVAQSDSVINGLKEENQKLKNQL 148 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444333
No 173
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=60.25 E-value=66 Score=28.57 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=29.8
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 660 LWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQA 701 (833)
Q Consensus 660 ~~~~~~el~e~k~~~~~l~~~l~~~e~q~~~l~~~~~~~~~~ 701 (833)
..-++++|.|+|++...+......+...+.+|.++...+.++
T Consensus 20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E 61 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344889999999999999987777555555555555554443
No 174
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=60.17 E-value=4.8e+02 Score=33.58 Aligned_cols=46 Identities=11% Similarity=0.097 Sum_probs=23.1
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 654 ADARCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLRE 699 (833)
Q Consensus 654 ~~~r~~~~~~~~el~e~k~~~~~l~~~l~~~e~q~~~l~~~~~~~~ 699 (833)
....|...+.+..+..++..+..++.....++.+.+..........
T Consensus 755 ~~s~~~~iea~~~i~~~e~~i~~~~~~~~~lk~a~~~~k~~a~~~~ 800 (1072)
T KOG0979|consen 755 ARSNKNNIEAERKIEKLEDNISFLEAREDLLKTALEDKKKEAAEKR 800 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444455555555555555555555555555555555444444333
No 175
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=60.14 E-value=2.1e+02 Score=30.22 Aligned_cols=81 Identities=25% Similarity=0.354 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 003293 336 IAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQD 415 (833)
Q Consensus 336 i~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLqeLE~ei~~LkkK~~~q~~llk~K~k~E~~ik~L~~ 415 (833)
...|+..+..++++...+..+++.+. -.-+..+.....+|..||.+-.++-.+. -..+..+..|+.
T Consensus 138 n~~Le~~~~~le~~l~~~k~~ie~vN----~~RK~~Q~~~~~~L~~Le~~W~~~v~kn----------~eie~a~~~Le~ 203 (221)
T PF05700_consen 138 NEQLEAMLKRLEKELAKLKKEIEEVN----RERKRRQEEAGEELRYLEQRWKELVSKN----------LEIEVACEELEQ 203 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 34445555555555555555544431 1112223334556666666666554333 345677788888
Q ss_pred HHHHHHHHHHHHHHH
Q 003293 416 EIQFIKAQKVQLQHR 430 (833)
Q Consensus 416 EIq~mK~qKv~L~kk 430 (833)
||..++.+..++..+
T Consensus 204 ei~~l~~~~~~~~~~ 218 (221)
T PF05700_consen 204 EIEQLKRKAAELKEN 218 (221)
T ss_pred HHHHHHHHHHHHhcc
Confidence 888888877766543
No 176
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=59.40 E-value=2.1e+02 Score=29.10 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 003293 375 HAHKLKSLEAQILDLK 390 (833)
Q Consensus 375 ~ekkLqeLE~ei~~Lk 390 (833)
+..++..++..+..+.
T Consensus 128 ~~~~l~~l~~~~~~~~ 143 (191)
T PF04156_consen 128 VEERLDSLDESIKELE 143 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 177
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=58.49 E-value=1.9e+02 Score=36.16 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=14.4
Q ss_pred HhHhhhhhHHHHHHHHHHHHH
Q 003293 474 KLVLQRKTEEAAMATKRLKEL 494 (833)
Q Consensus 474 ~~VLkRKtEEa~aa~kRLK~~ 494 (833)
..+|+.-.++.....+.+|..
T Consensus 691 ~~iL~~~~~~I~~~v~~ik~i 711 (717)
T PF10168_consen 691 KEILKQQGEEIDELVKQIKNI 711 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777776643
No 178
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=56.53 E-value=2.7e+02 Score=30.45 Aligned_cols=28 Identities=36% Similarity=0.523 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003293 334 KKIAELEDEKRTVQKERDHLLTEIENLA 361 (833)
Q Consensus 334 kKi~eLE~ei~~LqkErdeLl~eL~~~~ 361 (833)
+||.+||.++..|.+|+..=.-+|++++
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlE 45 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLE 45 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 6788888888888888866665665553
No 179
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=56.37 E-value=2.5e+02 Score=29.17 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 385 QILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRI 431 (833)
Q Consensus 385 ei~~LkkK~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkm 431 (833)
+|.+|++....-.+++..-.--++++..|+..+..+..+...|+.+-
T Consensus 44 e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~ 90 (193)
T PF14662_consen 44 EITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQA 90 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443333333333334555555666666666666655543
No 180
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=56.25 E-value=2.1e+02 Score=28.26 Aligned_cols=62 Identities=19% Similarity=0.313 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 333 GKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQ 402 (833)
Q Consensus 333 ekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLqeLE~ei~~LkkK~~~q~~llk~ 402 (833)
...+..|+.++..+-.++..|..+|.++. .-++...+.|+.+..+|.+|..-..+..++++.
T Consensus 51 k~eie~L~~el~~lt~el~~L~~EL~~l~--------sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~ 112 (140)
T PF10473_consen 51 KAEIETLEEELEELTSELNQLELELDTLR--------SEKENLDKELQKKQEKVSELESLNSSLENLLQE 112 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 35566677777777777777777776652 223445566666666677666555554444443
No 181
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=56.03 E-value=2.6e+02 Score=29.14 Aligned_cols=51 Identities=25% Similarity=0.277 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHH-------HHHHHHHhHhhhhhHHHHHHHHHHHHHH
Q 003293 445 REKELLQLRKEGRRNEYERHKLQ-------ALNQRQKLVLQRKTEEAAMATKRLKELL 495 (833)
Q Consensus 445 ~eKEi~qLKke~rK~~~e~~kLe-------~~~~kQ~~VLkRKtEEa~aa~kRLK~~l 495 (833)
+.+.+..+..+.......+..|+ ..+.+|-.+.++|+.++......|.+-+
T Consensus 123 L~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei 180 (194)
T PF15619_consen 123 LQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEI 180 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555544444 3346677777788887777666655444
No 182
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=56.00 E-value=1.1e+02 Score=30.63 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 003293 336 IAELEDEKRTVQKERDHLLTEIENL 360 (833)
Q Consensus 336 i~eLE~ei~~LqkErdeLl~eL~~~ 360 (833)
|.+|+.++..+..+...|..+|.++
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443
No 183
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=55.26 E-value=2.5e+02 Score=30.38 Aligned_cols=114 Identities=25% Similarity=0.301 Sum_probs=60.6
Q ss_pred ccccCCCcchhhhhcccCCCC--cceeEEeecCCCCCCHHHHHHHHHHHHHhhcccc------------ccccc------
Q 003293 114 VHVPYRDSKLTRLLQDSLGGN--SRTVMIACISPADINAEETLNTLKYANRARNIQN------------KPIVN------ 173 (833)
Q Consensus 114 ~~iPyRdSkLTrLLqdsLgGn--s~t~mI~~VSP~~~~~~ETlsTL~fA~rar~I~n------------~p~vn------ 173 (833)
.+||--.++-||||-|.+.|= +-..|---+ ....--|.+...+||.+-..+.- .|.+-
T Consensus 93 ~~v~a~e~~~~rll~d~i~nLk~se~~lkqQ~--~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~l 170 (330)
T KOG2991|consen 93 AYVQALEGKYTRLLSDDITNLKESEEKLKQQQ--QEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTL 170 (330)
T ss_pred HHHHHhcCcccchhHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHh
Confidence 477878889999999987541 110000000 00123456667777766544422 22211
Q ss_pred CCcchHH-HHHHHHH-------HHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 174 RDPMSTE-MLKMRQQ-------LEFLQAELCARGGGSSSDEVQVLKERIAWLEAANEDLCRELH 229 (833)
Q Consensus 174 ~d~~~~~-i~~l~~~-------i~~L~~el~~~~~g~~s~~~~~Lkeki~~Le~ene~L~~EL~ 229 (833)
.||...+ ..+|+.+ |+.++.+|..-...+.+..-..|..++..|.++|++|-+...
T Consensus 171 lDPAinl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s 234 (330)
T KOG2991|consen 171 LDPAINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQAS 234 (330)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhh
Confidence 2443322 2234444 444445554333344445556677888888888888877554
No 184
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=54.58 E-value=1.7e+02 Score=36.88 Aligned_cols=27 Identities=30% Similarity=0.330 Sum_probs=13.6
Q ss_pred CCCcceeEEeecCCCCCCHHHHHHHHHHH
Q 003293 132 GGNSRTVMIACISPADINAEETLNTLKYA 160 (833)
Q Consensus 132 gGns~t~mI~~VSP~~~~~~ETlsTL~fA 160 (833)
|++.++++| ..|+...=.-++-|+-.+
T Consensus 324 ~~~~~~~iI--TGpN~gGKTt~lktigl~ 350 (782)
T PRK00409 324 GFDKTVLVI--TGPNTGGKTVTLKTLGLA 350 (782)
T ss_pred CCCceEEEE--ECCCCCCcHHHHHHHHHH
Confidence 455455554 455555444455555433
No 185
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=53.74 E-value=2.2e+02 Score=27.56 Aligned_cols=38 Identities=16% Similarity=0.306 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 524 QRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVL 561 (833)
Q Consensus 524 ~~Wle~e~ev~~~~~e~~~~le~l~~~R~~L~~el~~L 561 (833)
..|-..+-.+--.+.++...++.|..+...|-.+|..|
T Consensus 94 ~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 94 ASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 78999999999999999999999999999998887653
No 186
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=52.93 E-value=5.5e+02 Score=32.06 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 377 HKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQ 433 (833)
Q Consensus 377 kkLqeLE~ei~~LkkK~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmke 433 (833)
.+...|+.++..++.+... --..+.+...|+.+...-+.....|+.+..+
T Consensus 352 ~~~~~L~~~l~~~~~~~~~-------~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e 401 (754)
T TIGR01005 352 ARESQLVSDVNQLKAASAQ-------AGEQQVDLDALQRDAAAKRQLYESYLTNYRQ 401 (754)
T ss_pred HHHHHHHHHHHHHHHHHHh-------CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555433222 1223445556666666666666666665533
No 187
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=52.63 E-value=4.5e+02 Score=30.93 Aligned_cols=107 Identities=16% Similarity=0.146 Sum_probs=43.7
Q ss_pred CCCcceeEEeecCCCCCCHHHHHHHHH--HHHHhhcccccccc-cCCcchHHHHHHHHHHHHHHHHHhh---cCCCCChH
Q 003293 132 GGNSRTVMIACISPADINAEETLNTLK--YANRARNIQNKPIV-NRDPMSTEMLKMRQQLEFLQAELCA---RGGGSSSD 205 (833)
Q Consensus 132 gGns~t~mI~~VSP~~~~~~ETlsTL~--fA~rar~I~n~p~v-n~d~~~~~i~~l~~~i~~L~~el~~---~~~g~~s~ 205 (833)
.|++..+=|..-+|...-.....+++- |-..-...+....- -.......+..++.++...+..+.. ..+....+
T Consensus 118 ~~~s~vi~Is~~~~dP~~Aa~i~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~ 197 (498)
T TIGR03007 118 AGRDNLFTISYEDKDPELAKDVVQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPD 197 (498)
T ss_pred cCCCCeEEEEeeCCCHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence 455555555555665554555555542 22111111110000 0011123345556666655555532 22222122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003293 206 EVQVLKERIAWLEAANEDLCRELHEYRSRCTDV 238 (833)
Q Consensus 206 ~~~~Lkeki~~Le~ene~L~~EL~e~r~rl~~l 238 (833)
....+.+++..++........++.....++..+
T Consensus 198 ~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l 230 (498)
T TIGR03007 198 QEGDYYSEISEAQEELEAARLELNEAIAQRDAL 230 (498)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222334445555555555555555544444433
No 188
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=52.36 E-value=3e+02 Score=34.78 Aligned_cols=17 Identities=12% Similarity=0.305 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003293 417 IQFIKAQKVQLQHRIKQ 433 (833)
Q Consensus 417 Iq~mK~qKv~L~kkmke 433 (833)
|...+.+-..+++++++
T Consensus 574 ~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 574 LKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33333333444444443
No 189
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=51.80 E-value=2.3e+02 Score=27.29 Aligned_cols=51 Identities=20% Similarity=0.328 Sum_probs=44.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 003293 662 EKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSASG 712 (833)
Q Consensus 662 ~~~~el~e~k~~~~~l~~~l~~~e~q~~~l~~~~~~~~~~~~~~l~~~~~~ 712 (833)
.++.-+.+++++..-++.++.-.+.|-+.+..+++.+..++--+|+.++.+
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~~~~ 117 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGDAANG 117 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 566677888889999999999999999999999999999999999887554
No 190
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=51.79 E-value=3.4e+02 Score=29.24 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 003293 336 IAELEDEKRTVQKERDHLLTEIENL 360 (833)
Q Consensus 336 i~eLE~ei~~LqkErdeLl~eL~~~ 360 (833)
+..+..++..+..+++.|...+...
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEI 46 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666666666665555443
No 191
>PF14282 FlxA: FlxA-like protein
Probab=51.68 E-value=98 Score=28.91 Aligned_cols=55 Identities=20% Similarity=0.331 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003293 333 GKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKK 391 (833)
Q Consensus 333 ekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLqeLE~ei~~Lkk 391 (833)
...|..|+.+|..|+.++..|... ..-+.+........+...|..|+.+|..+..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~----~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~ 72 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQD----SDLDAEQKQQQIQLLQAQIQQLQAQIAQLQS 72 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777666666432 0001112222223345555555555555543
No 192
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=51.66 E-value=2.3e+02 Score=27.28 Aligned_cols=40 Identities=33% Similarity=0.362 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 003293 371 LQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFI 420 (833)
Q Consensus 371 L~e~~ekkLqeLE~ei~~LkkK~~~q~~llk~K~k~E~~ik~L~~EIq~m 420 (833)
+.++.+.++..||.+|..|.+. -.+.++++..|+.+|+.+
T Consensus 71 ~~~eL~er~E~Le~ri~tLekQ----------e~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 71 AVDELEERKETLELRIKTLEKQ----------EEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 3334444444455444444422 223344555555555543
No 193
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=51.35 E-value=3.9e+02 Score=29.89 Aligned_cols=84 Identities=20% Similarity=0.285 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHH
Q 003293 299 MDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHK 378 (833)
Q Consensus 299 l~~EL~eLnkqLe~KE~e~k~~~~~~~~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekk 378 (833)
+......|..++....+....+...|...+..-. .+|.++..++.....+..++..++.... .++.+ ...+
T Consensus 177 l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk-~~l~~~~~ei~~~~~~l~e~~~~l~~l~-------~~I~~-~~~~ 247 (312)
T smart00787 177 LRDRKDALEEELRQLKQLEDELEDCDPTELDRAK-EKLKKLLQEIMIKVKKLEELEEELQELE-------SKIED-LTNK 247 (312)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH-HHHH
Confidence 4444555555555555444444444444444333 6666666666666666666665555442 12222 3344
Q ss_pred HHHHHHHHHHHHH
Q 003293 379 LKSLEAQILDLKK 391 (833)
Q Consensus 379 LqeLE~ei~~Lkk 391 (833)
..+++.+|.++++
T Consensus 248 k~e~~~~I~~ae~ 260 (312)
T smart00787 248 KSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555554
No 194
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=51.05 E-value=5.4e+02 Score=31.38 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003293 335 KIAELEDEKRTVQKERDHLL 354 (833)
Q Consensus 335 Ki~eLE~ei~~LqkErdeLl 354 (833)
++.....-++..|.|.|-|.
T Consensus 60 k~k~~~~llK~yQ~EiD~Lt 79 (629)
T KOG0963|consen 60 KLKMVNPLLKSYQSEIDNLT 79 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444556666666554
No 195
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=50.56 E-value=3.2e+02 Score=28.55 Aligned_cols=138 Identities=21% Similarity=0.280 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHH
Q 003293 297 NSMDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHA 376 (833)
Q Consensus 297 ~~l~~EL~eLnkqLe~KE~e~k~~~~~~~~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~e 376 (833)
..|..++.++.+..+..+..|..+. .....|-.-+..++.|+++|...|..... ++ ..|. ...
T Consensus 30 ksLKeei~emkk~e~~~~k~m~ei~------------~eN~~L~epL~~a~~e~~eL~k~L~~y~k---dK-~~L~-~~k 92 (201)
T PF13851_consen 30 KSLKEEIAEMKKKEERNEKLMAEIS------------QENKRLSEPLKKAEEEVEELRKQLKNYEK---DK-QSLQ-NLK 92 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HH-HHHH-HHH
Confidence 3455555555554444444443322 45556666677777777777777766521 11 1122 245
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003293 377 HKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEG 456 (833)
Q Consensus 377 kkLqeLE~ei~~LkkK~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~eKEi~qLKke~ 456 (833)
.++..++.++..|+-.... .+.+..++..|-..+...-...+..+.. +...-...+++-+..|....
T Consensus 93 ~rl~~~ek~l~~Lk~e~ev----------L~qr~~kle~ErdeL~~kf~~~i~evqQ---k~~~kn~lLEkKl~~l~~~l 159 (201)
T PF13851_consen 93 ARLKELEKELKDLKWEHEV----------LEQRFEKLEQERDELYRKFESAIQEVQQ---KTGLKNLLLEKKLQALSEQL 159 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 6666777777777643322 2223333333333333333333333322 33333445556666666666
Q ss_pred hhhHHHHH
Q 003293 457 RRNEYERH 464 (833)
Q Consensus 457 rK~~~e~~ 464 (833)
.+.+.++.
T Consensus 160 E~keaqL~ 167 (201)
T PF13851_consen 160 EKKEAQLN 167 (201)
T ss_pred HHHHHHHH
Confidence 66655543
No 196
>PRK10884 SH3 domain-containing protein; Provisional
Probab=50.52 E-value=2e+02 Score=30.16 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003293 376 AHKLKSLEAQILDLKKKQEN 395 (833)
Q Consensus 376 ekkLqeLE~ei~~LkkK~~~ 395 (833)
+.+|.++|.|+.+++.+..+
T Consensus 92 ~~rlp~le~el~~l~~~l~~ 111 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777765554
No 197
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=50.06 E-value=3.6e+02 Score=29.05 Aligned_cols=46 Identities=26% Similarity=0.383 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 303 LNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHL 353 (833)
Q Consensus 303 L~eLnkqLe~KE~e~k~~~~~~~~~lkq~yekKi~eLE~ei~~LqkErdeL 353 (833)
..+|..+|.+.+++++... .--..++..+..|+.+.+..+.++..|
T Consensus 7 k~Ele~rL~q~eee~~~a~-----~~L~e~e~~a~~Leek~k~aeeea~~L 52 (246)
T PF00769_consen 7 KQELEERLRQMEEEMRRAQ-----EALEESEETAEELEEKLKQAEEEAEEL 52 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555443322 112234455666666666665555554
No 198
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=50.03 E-value=3.1e+02 Score=28.32 Aligned_cols=61 Identities=20% Similarity=0.315 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 331 HFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQ 393 (833)
Q Consensus 331 ~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLqeLE~ei~~LkkK~ 393 (833)
.-..++..|..++..++.++..|...++..... .... .-+...-.++.+|+.++..|++.+
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~-r~~~-~eR~~~l~~l~~l~~~~~~l~~el 126 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKG-REES-EEREELLEELEELKKELKELKKEL 126 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccc-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566667777777777777777666654321 1111 112223445555555555555433
No 199
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=50.03 E-value=3.2e+02 Score=28.66 Aligned_cols=51 Identities=31% Similarity=0.492 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 379 LKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRI 431 (833)
Q Consensus 379 LqeLE~ei~~LkkK~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkm 431 (833)
-.+|+.+|.++++|+..-..........+ -++..+||+.+|....+|-.++
T Consensus 201 k~~Le~~ia~~k~K~e~~e~r~~E~r~ie--Ekk~~eei~fLk~tN~qLKaQL 251 (259)
T KOG4001|consen 201 KKELELKIAQLKKKLETDEIRSEEEREIE--EKKMKEEIEFLKETNRQLKAQL 251 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777765443333322222 2466777777777776665554
No 200
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=49.86 E-value=2.2e+02 Score=26.58 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 667 IKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVA 703 (833)
Q Consensus 667 l~e~k~~~~~l~~~l~~~e~q~~~l~~~~~~~~~~~~ 703 (833)
+.+++.++..++..+...+.+...+...+...+..+-
T Consensus 69 ~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 69 IQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444443
No 201
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=49.71 E-value=6.2e+02 Score=31.69 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=24.4
Q ss_pred CCcchhhhhcccCCCCcceeEEeecCCC-CCCHHHHHH
Q 003293 119 RDSKLTRLLQDSLGGNSRTVMIACISPA-DINAEETLN 155 (833)
Q Consensus 119 RdSkLTrLLqdsLgGns~t~mI~~VSP~-~~~~~ETls 155 (833)
|-+--+|+++..=||---|++-+.+-|. .++....|.
T Consensus 388 r~~L~aRvMqtt~GG~kGTvIrVPLK~~eA~n~RDALa 425 (1259)
T KOG0163|consen 388 RTGLCARVMQTTKGGFKGTVIRVPLKIHEASNARDALA 425 (1259)
T ss_pred HHHHHHHHHHhccCCccceEEEeeccHHhhcchHHHHH
Confidence 3444578888888888888888887764 333444443
No 202
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=49.00 E-value=3.8e+02 Score=33.92 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003293 414 QDEIQFIKAQKVQLQHRIKQ 433 (833)
Q Consensus 414 ~~EIq~mK~qKv~L~kkmke 433 (833)
+.-|...+.+-.++++++|+
T Consensus 576 ~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 576 QQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555554
No 203
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=48.92 E-value=5.3e+02 Score=30.72 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003293 378 KLKSLEAQILDLKKKQEN 395 (833)
Q Consensus 378 kLqeLE~ei~~LkkK~~~ 395 (833)
.-.+|+.++.+++-|+.+
T Consensus 269 a~~ql~aE~~EleDkyAE 286 (596)
T KOG4360|consen 269 AQRQLTAELEELEDKYAE 286 (596)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 334566666666666554
No 204
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=48.81 E-value=7.1e+02 Score=32.13 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003293 523 FQRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQVD 565 (833)
Q Consensus 523 ~~~Wle~e~ev~~~~~e~~~~le~l~~~R~~L~~el~~Lk~~~ 565 (833)
++...+...+.--++.++.-.|..+...-..+...|..|+++.
T Consensus 330 l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~ 372 (1200)
T KOG0964|consen 330 LQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQ 372 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4555555555666788888899999999999999999997743
No 205
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=48.13 E-value=6.1e+02 Score=31.18 Aligned_cols=56 Identities=20% Similarity=0.250 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 334 KKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQ 393 (833)
Q Consensus 334 kKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLqeLE~ei~~LkkK~ 393 (833)
+++..++.++..++..++.+...+.... ......++..+.++.+++.++.+.++..
T Consensus 230 ~~i~~l~~ele~a~~~l~~l~~~~~~~G----G~~~~~r~~Le~ei~~le~e~~e~~~~l 285 (650)
T TIGR03185 230 QEIAHLRNELEEAQRSLESLEKKFRSEG----GDLFEEREQLERQLKEIEAARKANRAQL 285 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc----chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555544321 1112223334455555555555444433
No 206
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=47.50 E-value=6.1e+02 Score=31.00 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 406 SDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQW 441 (833)
Q Consensus 406 ~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~ 441 (833)
.|.+-..|-.||..+|=..+-|-+.-.+-.++||.-
T Consensus 172 LETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~s 207 (861)
T KOG1899|consen 172 LETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLS 207 (861)
T ss_pred HHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhH
Confidence 334444556677777777777766666666666653
No 207
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=47.30 E-value=6.7e+02 Score=31.42 Aligned_cols=6 Identities=50% Similarity=0.833 Sum_probs=2.5
Q ss_pred eeeeec
Q 003293 63 LHLVDL 68 (833)
Q Consensus 63 L~lVDL 68 (833)
|-+-|+
T Consensus 173 lR~y~~ 178 (717)
T PF10168_consen 173 LRLYDI 178 (717)
T ss_pred EEEEec
Confidence 444444
No 208
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=46.36 E-value=6.1e+02 Score=30.68 Aligned_cols=150 Identities=17% Similarity=0.245 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH------
Q 003293 376 AHKLKSLEAQILDLKK--KQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQW----KA------ 443 (833)
Q Consensus 376 ekkLqeLE~ei~~Lkk--K~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~----k~------ 443 (833)
+++|..+|.+...-.. ..+++...-..-.+.+..+..|...|..+..--..+...+-...+..+.- ..
T Consensus 167 e~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~ 246 (560)
T PF06160_consen 167 EKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLE 246 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCC
Confidence 3444444444444332 12224444455555666677777777777777766665555544444331 11
Q ss_pred --HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCCCcchH
Q 003293 444 --SREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESRKSSARENSAVTNGNLTNGQSNEK 521 (833)
Q Consensus 444 --~~eKEi~qLKke~rK~~~e~~kLe~~~~kQ~~VLkRKtEEa~aa~kRLK~~le~rK~~~r~~~~~~~~~~~~~~~~~~ 521 (833)
...+++.+++.+.......+..| .++++...+..+.+.++.
T Consensus 247 ~~~i~~~i~~i~~~l~~~~~~L~~l-------------~l~~~~~~~~~i~~~Id~------------------------ 289 (560)
T PF06160_consen 247 HLDIEEEIEQIEEQLEEALALLKNL-------------ELDEVEEENEEIEERIDQ------------------------ 289 (560)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHHHHHH------------------------
Confidence 23355555555555554444333 344444444444333321
Q ss_pred HHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003293 522 SFQRWLDHEL----EVMVNVHEVRFDYEKQSQVRAALAEELAVLKQ 563 (833)
Q Consensus 522 ~~~~Wle~e~----ev~~~~~e~~~~le~l~~~R~~L~~el~~Lk~ 563 (833)
+-.-++.|. .|.-.+..+...++.....-..|..++..|++
T Consensus 290 -lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~ 334 (560)
T PF06160_consen 290 -LYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQ 334 (560)
T ss_pred -HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222222 23334566677778888888888888888876
No 209
>PRK09343 prefoldin subunit beta; Provisional
Probab=46.06 E-value=2.7e+02 Score=26.56 Aligned_cols=52 Identities=25% Similarity=0.181 Sum_probs=40.0
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 003293 661 WEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSASG 712 (833)
Q Consensus 661 ~~~~~el~e~k~~~~~l~~~l~~~e~q~~~l~~~~~~~~~~~~~~l~~~~~~ 712 (833)
.++++-..+++.++.-++..+...+.+...|...+...+..+--+|.....+
T Consensus 67 qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~~ 118 (121)
T PRK09343 67 VDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYYPQ 118 (121)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3566666777777777788888888888888888888888888888875443
No 210
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=45.70 E-value=4.9e+02 Score=29.32 Aligned_cols=99 Identities=20% Similarity=0.220 Sum_probs=55.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 003293 396 QVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKL 475 (833)
Q Consensus 396 q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~eKEi~qLKke~rK~~~e~~kLe~~~~kQ~~ 475 (833)
...++..-++..+++..|+.+++.+--.+..++ .|-.-|+.--..++.|+..+=..+..+-..|-.|=+.+.-...
T Consensus 128 re~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~----~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~e 203 (319)
T PF09789_consen 128 REDLVEQLEKLREQIEQLERDLQSLLDEKEELV----TERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKE 203 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHH
Confidence 456666666777777777777777766665554 3444455545555667766444444443344444444443333
Q ss_pred HhhhhhHH---HHHHHHHHHHHHHhh
Q 003293 476 VLQRKTEE---AAMATKRLKELLESR 498 (833)
Q Consensus 476 VLkRKtEE---a~aa~kRLK~~le~r 498 (833)
-|.--.+| +-....+-|-+++++
T Consensus 204 rl~q~qeE~~l~k~~i~KYK~~le~k 229 (319)
T PF09789_consen 204 RLKQLQEEKELLKQTINKYKSALERK 229 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333 334556778888853
No 211
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=44.97 E-value=1.9e+02 Score=30.98 Aligned_cols=64 Identities=20% Similarity=0.299 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 331 HFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQEN 395 (833)
Q Consensus 331 ~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLqeLE~ei~~LkkK~~~ 395 (833)
.-...+.+++.+|++|..|-..|..+-+.+-....+...+-. +...+|-.+..++.+++..+..
T Consensus 87 rKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~-el~~~le~~~~~l~~~~~~~~~ 150 (292)
T KOG4005|consen 87 RKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNH-ELDSELELLRQELAELKQQQQH 150 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHhhHHHHHH
Confidence 333455556666666655555555443322111111112211 2445555666666666654443
No 212
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=44.49 E-value=98 Score=26.22 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 369 QKLQDVHAHKLKSLEAQILDLKKK 392 (833)
Q Consensus 369 ~KL~e~~ekkLqeLE~ei~~LkkK 392 (833)
++|++ .+.+-.+|+.+|..|++.
T Consensus 32 ~kLqe-aE~rn~eL~~ei~~L~~e 54 (61)
T PF08826_consen 32 SKLQE-AEKRNRELEQEIERLKKE 54 (61)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHH
Confidence 44444 445555555555555543
No 213
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=44.40 E-value=2.7e+02 Score=25.98 Aligned_cols=29 Identities=10% Similarity=0.283 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 331 HFGKKIAELEDEKRTVQKERDHLLTEIEN 359 (833)
Q Consensus 331 ~yekKi~eLE~ei~~LqkErdeLl~eL~~ 359 (833)
.|.+++..+..++..++.+..+....++.
T Consensus 14 ~~q~~~~~l~~q~~~le~~~~E~~~v~~e 42 (110)
T TIGR02338 14 QLQQQLQAVATQKQQVEAQLKEAEKALEE 42 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555443333
No 214
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=44.18 E-value=4.2e+02 Score=28.17 Aligned_cols=25 Identities=20% Similarity=0.065 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 538 HEVRFDYEKQSQVRAALAEELAVLK 562 (833)
Q Consensus 538 ~e~~~~le~l~~~R~~L~~el~~Lk 562 (833)
..++..+.+|...-..|..+|...+
T Consensus 193 e~aE~~v~~Le~~id~le~eL~~~k 217 (237)
T PF00261_consen 193 EFAERRVKKLEKEIDRLEDELEKEK 217 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 215
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=43.32 E-value=6.7e+02 Score=31.94 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 003293 638 SMADAKNLLQYMFNSLADARCQLWEKDIEIKEMKEQLKELVGLLR 682 (833)
Q Consensus 638 s~~eAk~~l~~L~~~~~~~r~~~~~~~~el~e~k~~~~~l~~~l~ 682 (833)
++.+|.-+|..|.+++.+-+..... +..-.++++.+..|...++
T Consensus 555 ~~~~A~q~L~qlq~mmenmq~~~~q-~~~~~~~~q~m~~L~dl~r 598 (820)
T PF13779_consen 555 RMDEARQLLEQLQQMMENMQNAQPQ-QQQQQEMQQAMEELGDLLR 598 (820)
T ss_pred CHHHHHHHHHHHHHHHHhccccCCC-chhhHHHHHHHHHHHHHHH
Confidence 5788999999999999988876655 4455667777777765554
No 216
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=43.32 E-value=3.6e+02 Score=27.84 Aligned_cols=65 Identities=14% Similarity=0.225 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 374 VHAHKLKSLEAQILDLKKKQENQ----VQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWK 442 (833)
Q Consensus 374 ~~ekkLqeLE~ei~~LkkK~~~q----~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k 442 (833)
.++..+++|++++..+.++..+- .+....+...|+....|..++..++. ..+.||.+..+++...
T Consensus 78 ~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk----~~e~lr~el~k~~e~d 146 (203)
T KOG3433|consen 78 DRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKK----ILESLRWELAKIQETD 146 (203)
T ss_pred HHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhcC
Confidence 36778899999999997654442 11222344444444455555555554 4455666666666543
No 217
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=43.19 E-value=5.7e+02 Score=29.40 Aligned_cols=72 Identities=21% Similarity=0.286 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 369 QKLQDVHAHKLKSLEAQILDLKK----KQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQ 440 (833)
Q Consensus 369 ~KL~e~~ekkLqeLE~ei~~Lkk----K~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~ 440 (833)
.-|+.+|-..|+.+..++..|.. |+-+-..|.+.-+..+..+..-+.|-+.+.+....|-.++-.|..++|.
T Consensus 413 eaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRt 488 (593)
T KOG4807|consen 413 EALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRT 488 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34566677778888888888854 5555566666667777777777788888877777777777666666654
No 218
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=43.13 E-value=4e+02 Score=27.63 Aligned_cols=58 Identities=21% Similarity=0.246 Sum_probs=35.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 003293 403 KQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQ 471 (833)
Q Consensus 403 K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~eKEi~qLKke~rK~~~e~~kLe~~~~ 471 (833)
..+.|..+..|+..|..++.+...+ ...+....+||.+++.....-..++...+..++
T Consensus 126 ~~~~e~~i~~Le~ki~el~~~~~~~-----------~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 126 LKELESEIKELEMKILELQRQAAKL-----------KEKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666665555544433 333444558888888888777777766655543
No 219
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=43.11 E-value=4.1e+02 Score=27.69 Aligned_cols=17 Identities=24% Similarity=0.224 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003293 375 HAHKLKSLEAQILDLKK 391 (833)
Q Consensus 375 ~ekkLqeLE~ei~~Lkk 391 (833)
.++++.+++.++.++..
T Consensus 56 le~~~~~~~~~~~~~~~ 72 (221)
T PF04012_consen 56 LERKLDEAEEEAEKWEK 72 (221)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555566666665554
No 220
>PRK01156 chromosome segregation protein; Provisional
Probab=42.67 E-value=8.3e+02 Score=31.15 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=21.2
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 660 LWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLRE 699 (833)
Q Consensus 660 ~~~~~~el~e~k~~~~~l~~~l~~~e~q~~~l~~~~~~~~ 699 (833)
...+..++..++..+..+++.+.+.+.+...+..++..+.
T Consensus 683 ~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~ 722 (895)
T PRK01156 683 LKKSRKALDDAKANRARLESTIEILRTRINELSDRINDIN 722 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344455555555666666666666555444444443333
No 221
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=42.50 E-value=3.1e+02 Score=28.45 Aligned_cols=84 Identities=25% Similarity=0.397 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCCCcchhhhhhhhhhccccccccccCCCCchhHHHH
Q 003293 207 VQVLKERIAWLEAANEDLCRELHEYRSRCTDVEQRETDAQDGSPCPLKSDGLKRSLNSIEQTDYQMGENITGDSREIDEV 286 (833)
Q Consensus 207 ~~~Lkeki~~Le~ene~L~~EL~e~r~rl~~leq~~~d~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (833)
++.....|..|...|..|+.+..+++.-| |++.++
T Consensus 50 lQ~hl~EIR~LKe~NqkLqedNqELRdLC---------------CFLDdd------------------------------ 84 (195)
T PF10226_consen 50 LQQHLNEIRGLKEVNQKLQEDNQELRDLC---------------CFLDDD------------------------------ 84 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------cccchh------------------------------
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 287 AKEWEHTLLQNSMDKELNELNRRLEEKESEMKLVGGSDTAALKQH---FGKKIAELEDEKRTVQKERDHLLT 355 (833)
Q Consensus 287 ake~E~~~~Q~~l~~EL~eLnkqLe~KE~e~k~~~~~~~~~lkq~---yekKi~eLE~ei~~LqkErdeLl~ 355 (833)
...-.....+-..|+.+...+|++. |.+||.+||.....+-.|-.+|..
T Consensus 85 --------------------RqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKE 136 (195)
T PF10226_consen 85 --------------------RQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIRENLELKE 136 (195)
T ss_pred --------------------HHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
No 222
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=41.46 E-value=9.3e+02 Score=31.39 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=25.4
Q ss_pred cccCCCCcceeEEeecCCCCCCHHHHHHHHHHHHHhhcccc
Q 003293 128 QDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQN 168 (833)
Q Consensus 128 qdsLgGns~t~mI~~VSP~~~~~~ETlsTL~fA~rar~I~n 168 (833)
+-+.+|.+-+.||-.-.-+...|.+.|..+.+--+||++-.
T Consensus 89 ~R~I~~G~seY~IDne~VT~eeY~~eLekinIlVkARNFLV 129 (1141)
T KOG0018|consen 89 TRAINGGTSEYMIDNEIVTREEYLEELEKINILVKARNFLV 129 (1141)
T ss_pred hhhhcCCceeEEEcceeccHHHHHHHHhhcceeeeeeeEEE
Confidence 33344556677776665555567777777777666665543
No 223
>PF15294 Leu_zip: Leucine zipper
Probab=41.07 E-value=5.3e+02 Score=28.44 Aligned_cols=50 Identities=28% Similarity=0.399 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 375 HAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHR 430 (833)
Q Consensus 375 ~ekkLqeLE~ei~~LkkK~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kk 430 (833)
..+.+..||.++..++-. +.+.-...+...+.|...+..-|..-...+.+
T Consensus 188 ~~q~l~dLE~k~a~lK~e------~ek~~~d~~~~~k~L~e~L~~~KhelL~~Qeq 237 (278)
T PF15294_consen 188 KAQDLSDLENKMAALKSE------LEKALQDKESQQKALEETLQSCKHELLRVQEQ 237 (278)
T ss_pred cccchhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 356677788888888633 33333344445666777777766665555544
No 224
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.79 E-value=4.8e+02 Score=27.86 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 334 KKIAELEDEKRTVQKERDHLLTEIE 358 (833)
Q Consensus 334 kKi~eLE~ei~~LqkErdeLl~eL~ 358 (833)
....-++++|..++.|.+-+...++
T Consensus 86 ~~q~~ieqeik~~q~elEvl~~n~Q 110 (246)
T KOG4657|consen 86 ARQMGIEQEIKATQSELEVLRRNLQ 110 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566677777766665554443
No 225
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=40.59 E-value=5.2e+02 Score=29.55 Aligned_cols=53 Identities=15% Similarity=0.279 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 381 SLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQ 433 (833)
Q Consensus 381 eLE~ei~~LkkK~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmke 433 (833)
+++.-+.+.+..+.....+...-.....-+..+..++..+-.+-.+...+|.+
T Consensus 267 qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 267 QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333333333333333344444445555544444444444443
No 226
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=39.51 E-value=1.1e+03 Score=31.59 Aligned_cols=129 Identities=22% Similarity=0.355 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHH
Q 003293 298 SMDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAH 377 (833)
Q Consensus 298 ~l~~EL~eLnkqLe~KE~e~k~~~~~~~~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ek 377 (833)
.+..++.++.+.+.........+ .++..++..|+.+...+.++...+...+......++....++-....+
T Consensus 241 e~e~e~~~~~~~i~ei~~~~~el---------~k~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~ 311 (1294)
T KOG0962|consen 241 ELENELGPIEAKIEEIEKSLKEL---------EKLLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEE 311 (1294)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHH
Confidence 34455555555555544433322 234455666666666666666666555543333334444444444445
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 378 KLKSLEAQILDLKKKQ----ENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEA 435 (833)
Q Consensus 378 kLqeLE~ei~~LkkK~----~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ 435 (833)
++-+++.++..++.+. .++..+...|.+.+-....++.++...+.-+...-..+.+..
T Consensus 312 ~~~~~~~~~~~~e~~~~~l~~e~~~l~~~k~~~~~~~~~lq~e~~~~~~l~~~~~~~~~~~~ 373 (1294)
T KOG0962|consen 312 RLEEMGEKLRELEREISDLNEERSSLIQLKTELDLEQSELQAEAEFHQELKRQRDSLIQELA 373 (1294)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444444444322 334556667777888888888887777776666644444333
No 227
>PF14992 TMCO5: TMCO5 family
Probab=39.38 E-value=5.6e+02 Score=28.26 Aligned_cols=16 Identities=44% Similarity=0.522 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhhhhHH
Q 003293 446 EKELLQLRKEGRRNEY 461 (833)
Q Consensus 446 eKEi~qLKke~rK~~~ 461 (833)
+||+..|.++.++.+.
T Consensus 166 ekE~~lLe~el~k~q~ 181 (280)
T PF14992_consen 166 EKEMLLLEKELSKYQM 181 (280)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5666666666555554
No 228
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=38.43 E-value=2.6e+02 Score=32.39 Aligned_cols=72 Identities=28% Similarity=0.352 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 327 ALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLAS-NSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQ 398 (833)
Q Consensus 327 ~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~-~~~~~~~KL~e~~ekkLqeLE~ei~~LkkK~~~q~~ 398 (833)
....++..||-.+-++|+..+..||+-..+-=.+.. ....+..+++..++++=+---..|..|++|+....+
T Consensus 4 ~~~~~l~~Ki~~~~eqi~~e~~~rd~nv~eyLkl~~~aDk~Q~~rIkq~FekkNqksa~~i~~lqkkL~~y~~ 76 (395)
T PF10267_consen 4 AAIDHLQQKILKLKEQIKVEQTARDENVAEYLKLASNADKQQAARIKQVFEKKNQKSAQTIAQLQKKLEQYHK 76 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999988776222222 233456677777877777777777777777666433
No 229
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=36.92 E-value=2.7e+02 Score=29.84 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003293 522 SFQRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQ 563 (833)
Q Consensus 522 ~~~~Wle~e~ev~~~~~e~~~~le~l~~~R~~L~~el~~Lk~ 563 (833)
++..|-+...++.-.+..+..+++.+....+.+...+..+.+
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~ 84 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQ 84 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666666666666666666555544
No 230
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=36.92 E-value=5.9e+02 Score=27.79 Aligned_cols=29 Identities=34% Similarity=0.388 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003293 429 HRIKQEAEQFRQWKASREKELLQLRKEGR 457 (833)
Q Consensus 429 kkmkeE~ek~r~~k~~~eKEi~qLKke~r 457 (833)
..|..+...||..-...+.+|-+|+.+-.
T Consensus 189 ~~m~kei~~~re~i~el~e~I~~L~~eV~ 217 (258)
T PF15397_consen 189 QVMQKEIVQFREEIDELEEEIPQLRAEVE 217 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777766666666666665433
No 231
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=36.39 E-value=6.4e+02 Score=28.05 Aligned_cols=66 Identities=21% Similarity=0.316 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 382 LEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLR 453 (833)
Q Consensus 382 LE~ei~~LkkK~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~eKEi~qLK 453 (833)
|..+|+.|+-... ..|-..-++-++|-.+|.-+|..-..|++.+|-..+-+...--.-...+.-|+
T Consensus 4 Lq~eia~LrlEid------tik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~ 69 (305)
T PF14915_consen 4 LQDEIAMLRLEID------TIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLK 69 (305)
T ss_pred HHHHHHHHHHHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 5566666664333 33444445556788888888888888888887776666654444444444444
No 232
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.97 E-value=8.6e+02 Score=29.38 Aligned_cols=62 Identities=23% Similarity=0.291 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003293 287 AKEWEHTLLQNSMDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENL 360 (833)
Q Consensus 287 ake~E~~~~Q~~l~~EL~eLnkqLe~KE~e~k~~~~~~~~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~ 360 (833)
+++..+-..-..|..+|..+...+..+.++...+. +....+-.-...++-+|-.|..+|...
T Consensus 100 akE~~yl~kI~eleneLKq~r~el~~~q~E~erl~------------~~~sd~~e~~~~~E~qR~rlr~elKe~ 161 (772)
T KOG0999|consen 100 AKEEYYLQKILELENELKQLRQELTNVQEENERLE------------KVHSDLKESNAAVEDQRRRLRDELKEY 161 (772)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHhhhcchhhHHHHHHHHHHHHHH
Confidence 44444444445566666666666666666555443 233333333445555555565555443
No 233
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=35.85 E-value=7.7e+02 Score=28.81 Aligned_cols=38 Identities=32% Similarity=0.389 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHH
Q 003293 520 EKSFQRWLDHELEVMVNVHEV-RFDYEKQSQVRAALAEE 557 (833)
Q Consensus 520 ~~~~~~Wle~e~ev~~~~~e~-~~~le~l~~~R~~L~~e 557 (833)
.-.++.||..--|+-+.-... +...|+++..=+..++.
T Consensus 334 P~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~ek 372 (575)
T KOG4403|consen 334 PLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEK 372 (575)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 346899987655555443333 33455665555444444
No 234
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=35.71 E-value=6.3e+02 Score=27.76 Aligned_cols=7 Identities=29% Similarity=0.752 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 003293 181 MLKMRQQ 187 (833)
Q Consensus 181 i~~l~~~ 187 (833)
+......
T Consensus 70 L~~~H~~ 76 (297)
T PF02841_consen 70 LLELHEQ 76 (297)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4443333
No 235
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=34.21 E-value=8e+02 Score=28.49 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003293 213 RIAWLEAANEDLCRELHEYRSRCTDVEQ 240 (833)
Q Consensus 213 ki~~Le~ene~L~~EL~e~r~rl~~leq 240 (833)
++......+..|++.|..+..++.+++.
T Consensus 56 kNqksa~~i~~lqkkL~~y~~~l~ele~ 83 (395)
T PF10267_consen 56 KNQKSAQTIAQLQKKLEQYHKRLKELEQ 83 (395)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455666777778888777776664
No 236
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.85 E-value=2e+02 Score=30.97 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003293 378 KLKSLEAQILDLKKKQEN 395 (833)
Q Consensus 378 kLqeLE~ei~~LkkK~~~ 395 (833)
+++.|+.+|+.|++-+..
T Consensus 226 ~i~~lkeeia~Lkk~L~q 243 (305)
T KOG3990|consen 226 KIQKLKEEIARLKKLLHQ 243 (305)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 344445555555544443
No 237
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=33.49 E-value=9.3e+02 Score=30.10 Aligned_cols=56 Identities=11% Similarity=0.252 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 299 MDKELNELNRRLEEKESEMKLVGGS----DTAALKQHFGKKIAELEDEKRTVQKERDHLL 354 (833)
Q Consensus 299 l~~EL~eLnkqLe~KE~e~k~~~~~----~~~~lkq~yekKi~eLE~ei~~LqkErdeLl 354 (833)
+++++.++..+++..|..+..|... +...--+.+-.++.+|+.++..++....++.
T Consensus 272 L~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~ 331 (726)
T PRK09841 272 LQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEIS 331 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777766655421 2221123333567777777777766655553
No 238
>PRK11519 tyrosine kinase; Provisional
Probab=33.44 E-value=9.5e+02 Score=29.95 Aligned_cols=56 Identities=11% Similarity=0.215 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 299 MDKELNELNRRLEEKESEMKLVGGS----DTAALKQHFGKKIAELEDEKRTVQKERDHLL 354 (833)
Q Consensus 299 l~~EL~eLnkqLe~KE~e~k~~~~~----~~~~lkq~yekKi~eLE~ei~~LqkErdeLl 354 (833)
+++++.++..+|+..|..+..|... +...-.+..-+.+.+++.++..++.+..+|.
T Consensus 272 L~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~ 331 (719)
T PRK11519 272 LAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEIS 331 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777766655421 2222222233456666666666655555543
No 239
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=33.43 E-value=6e+02 Score=26.81 Aligned_cols=67 Identities=27% Similarity=0.385 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 373 DVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKEL 449 (833)
Q Consensus 373 e~~ekkLqeLE~ei~~LkkK~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~eKEi 449 (833)
+....-|..+|.-..+|-+++.-.... +..|...-..+|..-...+.+++.+..+|..++.-.+..|
T Consensus 79 dq~~~dL~s~E~sfsdl~~ryek~K~v----------i~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL 145 (207)
T PF05010_consen 79 DQAYADLNSLEKSFSDLHKRYEKQKEV----------IEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKL 145 (207)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666777777776655544333 3344444445667777788888888889988887666433
No 240
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=33.35 E-value=8.6e+02 Score=28.63 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003293 521 KSFQRWLDHELEVMVNVHEVRFDYEKQS 548 (833)
Q Consensus 521 ~~~~~Wle~e~ev~~~~~e~~~~le~l~ 548 (833)
....+|.+-|-+-+.-+++++..||.--
T Consensus 281 ~er~~wtE~ES~WIsLteeLR~dle~~r 308 (488)
T PF06548_consen 281 QERQRWTEAESKWISLTEELRVDLESSR 308 (488)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 3457899999888888888888887543
No 241
>COG2841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.19 E-value=1.8e+02 Score=25.34 Aligned_cols=50 Identities=28% Similarity=0.412 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Q 003293 384 AQILDLKKKQENQVQLLKQKQKSDEAAKRLQ--------DEIQFIKAQKVQLQHRIKQ 433 (833)
Q Consensus 384 ~ei~~LkkK~~~q~~llk~K~k~E~~ik~L~--------~EIq~mK~qKv~L~kkmke 433 (833)
..|..|+.+-..-.++....-+.+..|+... .||..||+||++|-..|-.
T Consensus 7 ~~is~Lk~~dahF~rLfd~hn~LDd~I~~~E~n~~~~s~~ev~~LKKqkL~LKDEi~~ 64 (72)
T COG2841 7 DLISKLKANDAHFARLFDKHNELDDRIKRAEGNRQPGSDAEVSNLKKQKLQLKDEIAS 64 (72)
T ss_pred HHHHHHhccchHHHHHHHHHhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHH
Confidence 4455555555555666666666677777765 5999999999998777643
No 242
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=33.16 E-value=7.6e+02 Score=27.95 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 343 KRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKK 392 (833)
Q Consensus 343 i~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLqeLE~ei~~LkkK 392 (833)
|..|+.+|+.-... .+ ..|+...-|..++++--+++|-+|.+-++-
T Consensus 120 i~dLE~dRe~haqd---aa-eGDDlt~~LEKEReqL~QQiEFe~~e~kK~ 165 (561)
T KOG1103|consen 120 IKDLEADREAHAQD---AA-EGDDLTAHLEKEREQLQQQIEFEIEEKKKA 165 (561)
T ss_pred HHHHHHHHHHHhhh---hh-ccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555443322 11 345566667666777777777777766643
No 243
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=33.13 E-value=3.6e+02 Score=29.63 Aligned_cols=71 Identities=25% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--HHH
Q 003293 373 DVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQ-HRIKQEAEQFRQWKASRE--KEL 449 (833)
Q Consensus 373 e~~ekkLqeLE~ei~~LkkK~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~-kkmkeE~ek~r~~k~~~e--KEi 449 (833)
|+|-.=||+.|--|.+|+.|+.+- +.++..-..||..+|.|-.+++ .=|.||=.+-...=+-++ |||
T Consensus 57 EQYLTPLQQKEV~iRHLkakLkes----------~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEI 126 (305)
T PF15290_consen 57 EQYLTPLQQKEVCIRHLKAKLKES----------ENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEI 126 (305)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHH----------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 003293 450 LQLR 453 (833)
Q Consensus 450 ~qLK 453 (833)
.|||
T Consensus 127 kQLk 130 (305)
T PF15290_consen 127 KQLK 130 (305)
T ss_pred HHHH
No 244
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=32.75 E-value=4e+02 Score=24.55 Aligned_cols=10 Identities=30% Similarity=0.328 Sum_probs=3.7
Q ss_pred HHHHHHHhHH
Q 003293 610 LVAMASQLSE 619 (833)
Q Consensus 610 l~~l~~kl~e 619 (833)
+..+.+.+.|
T Consensus 22 ~~~l~~~~~E 31 (105)
T cd00632 22 RQKVEAQLNE 31 (105)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 245
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=32.47 E-value=3.9e+02 Score=28.46 Aligned_cols=70 Identities=21% Similarity=0.187 Sum_probs=43.3
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 635 QLRSMADAKNLLQYMFNSLADARCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAI 704 (833)
Q Consensus 635 ~irs~~eAk~~l~~L~~~~~~~r~~~~~~~~el~e~k~~~~~l~~~l~~~e~q~~~l~~~~~~~~~~~~~ 704 (833)
.|++..|-|-.+..+-.-+......+-.+-.++.+++..+.++..+|+..+..+-.|..+++.+.-++.-
T Consensus 126 ~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~ 195 (290)
T COG4026 126 RVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYD 195 (290)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHH
Confidence 4555555555555554444444445555556667777777777777777777777777777666655443
No 246
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=32.27 E-value=6.1e+02 Score=28.20 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003293 328 LKQHFGKKIAELEDEKRTVQKER 350 (833)
Q Consensus 328 lkq~yekKi~eLE~ei~~LqkEr 350 (833)
|++.|-+++.+-|.+.+..++|.
T Consensus 342 ~rqmFvqrvkekE~elke~Ekel 364 (406)
T KOG3859|consen 342 MRQMFVQRVKEKEAELKEAEKEL 364 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777665554
No 247
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=32.20 E-value=5e+02 Score=25.56 Aligned_cols=37 Identities=24% Similarity=0.435 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 408 EAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKAS 444 (833)
Q Consensus 408 ~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~ 444 (833)
.++.....-+...-.++.+-+..++.|.+.||.|-..
T Consensus 64 ~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~t 100 (135)
T TIGR03495 64 AQLRQQLAQARALLAQREQRIERLKRENEDLRRWADT 100 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhcC
Confidence 3334444445556667777778888888888888643
No 248
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=32.14 E-value=3.9e+02 Score=29.74 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003293 524 QRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQ 563 (833)
Q Consensus 524 ~~Wle~e~ev~~~~~e~~~~le~l~~~R~~L~~el~~Lk~ 563 (833)
...+|.|+.++.++..|..+-=.++..|..-+++|..|-.
T Consensus 196 ~cL~dREvaLl~EmdkVK~EAmeiL~aRqkkAeeLkrltd 235 (302)
T PF07139_consen 196 SCLMDREVALLAEMDKVKAEAMEILDARQKKAEELKRLTD 235 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999988899999999999887754
No 249
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=31.68 E-value=5.8e+02 Score=26.14 Aligned_cols=55 Identities=22% Similarity=0.300 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 299 MDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHL 353 (833)
Q Consensus 299 l~~EL~eLnkqLe~KE~e~k~~~~~~~~~lkq~yekKi~eLE~ei~~LqkErdeL 353 (833)
|+++.......|....+-...+...|.......|++.+.+.....+....=.|.+
T Consensus 128 L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk~krmf~ei~d~~ 182 (201)
T KOG4603|consen 128 LKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKEWRKRKRMFREIIDKL 182 (201)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444555666777888888887766665443333333
No 250
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=31.41 E-value=4.2e+02 Score=31.40 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 664 DIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAV 702 (833)
Q Consensus 664 ~~el~e~k~~~~~l~~~l~~~e~q~~~l~~~~~~~~~~~ 702 (833)
+.+|..++..+..+...+.+.+.+.++|..+++.++.++
T Consensus 82 EKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 82 QKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333444444444344444444444445555555555554
No 251
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=31.32 E-value=1e+03 Score=28.77 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003293 332 FGKKIAELEDEKRTVQKERDHLLTEIENL 360 (833)
Q Consensus 332 yekKi~eLE~ei~~LqkErdeLl~eL~~~ 360 (833)
|...+.++.+.+.....+.+++..++...
T Consensus 264 ~d~~~~~~~~~l~~~~~~l~d~~~~l~~~ 292 (563)
T TIGR00634 264 IDGSLRELAEQVGNALTEVEEATRELQNY 292 (563)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777777766654
No 252
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=31.21 E-value=1.1e+03 Score=29.26 Aligned_cols=106 Identities=15% Similarity=0.108 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 334 KKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQ----------DVHAHKLKSLEAQILDLKKKQENQVQLLKQK 403 (833)
Q Consensus 334 kKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~----------e~~ekkLqeLE~ei~~LkkK~~~q~~llk~K 403 (833)
+.+.+....|..|..|-++|-.+.-.. ...++||+ +..-.++..|+.+..+|+.-........+..
T Consensus 446 DeLaEkdE~I~~lm~EGEkLSK~ql~q----s~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~ 521 (961)
T KOG4673|consen 446 DELAEKDEIINQLMAEGEKLSKKQLAQ----SAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLL 521 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 345555566666666666664432111 11223322 1122355666666666665444443333332
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 404 QKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASRE 446 (833)
Q Consensus 404 ~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~e 446 (833)
.+.|.+++.++.+-+.....+.-.|-+-..+.+...+..+
T Consensus 522 ---~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d 561 (961)
T KOG4673|consen 522 ---QETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATND 561 (961)
T ss_pred ---HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 2345566666666665555555555555555554444443
No 253
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=30.56 E-value=1.3e+03 Score=29.76 Aligned_cols=14 Identities=29% Similarity=0.361 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHh
Q 003293 183 KMRQQLEFLQAELC 196 (833)
Q Consensus 183 ~l~~~i~~L~~el~ 196 (833)
.|+.++..|...|.
T Consensus 228 eLr~QvrdLtEkLe 241 (1243)
T KOG0971|consen 228 ELRAQVRDLTEKLE 241 (1243)
T ss_pred HHHHHHHHHHHHHH
Confidence 37777777776663
No 254
>PF14282 FlxA: FlxA-like protein
Probab=30.32 E-value=2.3e+02 Score=26.46 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 407 DEAAKRLQDEIQFIKAQKVQLQHRIKQ 433 (833)
Q Consensus 407 E~~ik~L~~EIq~mK~qKv~L~kkmke 433 (833)
..++.-|+..|..|..+..+|+.+..+
T Consensus 50 ~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 50 QQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777766666555433
No 255
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=29.81 E-value=9.5e+02 Score=27.99 Aligned_cols=17 Identities=35% Similarity=0.417 Sum_probs=10.8
Q ss_pred HHHHHHhhhhcCCCccc
Q 003293 701 AVAITLARSASGNLHNS 717 (833)
Q Consensus 701 ~~~~~l~~~~~~~~~~~ 717 (833)
-+.|+++.++++..++|
T Consensus 339 s~~Va~~asas~~~~~s 355 (552)
T KOG2129|consen 339 SVEVALHASASQKYNGS 355 (552)
T ss_pred ceeeecccchhhhCCCC
Confidence 35567777777655555
No 256
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=29.78 E-value=2.7e+02 Score=26.27 Aligned_cols=36 Identities=31% Similarity=0.375 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003293 205 DEVQVLKERIAWLEAANEDLCRELHEYRSRCTDVEQ 240 (833)
Q Consensus 205 ~~~~~Lkeki~~Le~ene~L~~EL~e~r~rl~~leq 240 (833)
.++..|+..+..|-.+|..|.-|...++.++....+
T Consensus 22 ~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 22 EELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456678888888888999999999888888876654
No 257
>PF15456 Uds1: Up-regulated During Septation
Probab=29.35 E-value=5.1e+02 Score=25.04 Aligned_cols=93 Identities=22% Similarity=0.218 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHhHHHhhhhhc-cc-cccccccccCHHHHHHHHHHHHHHHHHHHHHHhHHhHHH
Q 003293 590 NARMARISSLENMLSISSNSLVAMASQLSEAEERDRL-FT-NRGRWNQLRSMADAKNLLQYMFNSLADARCQLWEKDIEI 667 (833)
Q Consensus 590 ~~~~aqI~~Le~~~~~~~~~l~~l~~kl~e~ee~~r~-~~-~~~rw~~irs~~eAk~~l~~L~~~~~~~r~~~~~~~~el 667 (833)
+.+..++..|.+-+...+..+. +.+|+-++-.+... +. ++.+ ....+-.....++++
T Consensus 25 e~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~--------------------~~~~~~~~~~~eeel 83 (124)
T PF15456_consen 25 EELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRR--------------------ARFSRESSLKAEEEL 83 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccc--------------------cCCCcchHHHHHHHH
Confidence 4466677777776666666665 66676665443211 11 1111 233445566677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 668 KEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVA 703 (833)
Q Consensus 668 ~e~k~~~~~l~~~l~~~e~q~~~l~~~~~~~~~~~~ 703 (833)
.+...++.++...|...|.+..++...+-.+--+|+
T Consensus 84 ~~~~rk~ee~~~eL~~le~R~~~~~~rLLeH~AavL 119 (124)
T PF15456_consen 84 AESDRKCEELAQELWKLENRLAEVRQRLLEHTAAVL 119 (124)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888777755555444443
No 258
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.25 E-value=7.9e+02 Score=26.93 Aligned_cols=142 Identities=22% Similarity=0.323 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003293 329 KQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDE 408 (833)
Q Consensus 329 kq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLqeLE~ei~~LkkK~~~q~~llk~K~k~E~ 408 (833)
.+.-+.++.+++.+...++.+++.|..++..+..+-++...++. +....++.|+.+|..++....+...+++.+.+.-.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~-~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq 111 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEID-QSKAEIKKLQKEIAELKENIVERQELLKKRARAMQ 111 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667777777777777777776666665443333333332 25566777777777777666666555554443211
Q ss_pred -------------HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 003293 409 -------------AAKRLQDEIQFIK------AQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQAL 469 (833)
Q Consensus 409 -------------~ik~L~~EIq~mK------~qKv~L~kkmkeE~ek~r~~k~~~eKEi~qLKke~rK~~~e~~kLe~~ 469 (833)
.-+.+.+-|.+.- ..-..++...+++......-+...+.++.+|..-.-..+..+..|+..
T Consensus 112 ~nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~q 191 (265)
T COG3883 112 VNGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQ 191 (265)
T ss_pred HcCChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122333333332 233457777777777777777777777666655555555555555444
Q ss_pred HH
Q 003293 470 NQ 471 (833)
Q Consensus 470 ~~ 471 (833)
..
T Consensus 192 k~ 193 (265)
T COG3883 192 KA 193 (265)
T ss_pred HH
Confidence 33
No 259
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=28.99 E-value=5.6e+02 Score=25.07 Aligned_cols=58 Identities=24% Similarity=0.319 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 003293 410 AKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQ 467 (833)
Q Consensus 410 ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~eKEi~qLKke~rK~~~e~~kLe 467 (833)
+.........+..+-..+...++.+.+.+...+.....--.+..-+.||.+.++.+|+
T Consensus 89 ~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk 146 (151)
T PF11559_consen 89 LASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444555555555555444444444434445555555555555543
No 260
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=28.95 E-value=1.1e+03 Score=28.35 Aligned_cols=52 Identities=19% Similarity=0.166 Sum_probs=40.0
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003293 657 RCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLAR 708 (833)
Q Consensus 657 r~~~~~~~~el~e~k~~~~~l~~~l~~~e~q~~~l~~~~~~~~~~~~~~l~~ 708 (833)
+.++-+...-|...+....+++..+++.+-++.|...++..-++++-.|=+.
T Consensus 253 ~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~ 304 (596)
T KOG4360|consen 253 RHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRSC 304 (596)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 4455556666777778888888888888888888888888888888776544
No 261
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=28.53 E-value=4.7e+02 Score=24.06 Aligned_cols=23 Identities=4% Similarity=0.176 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003293 331 HFGKKIAELEDEKRTVQKERDHL 353 (833)
Q Consensus 331 ~yekKi~eLE~ei~~LqkErdeL 353 (833)
.|.+.+..+..++..++.++.+.
T Consensus 10 ~l~~~~~~l~~~~~~l~~~~~E~ 32 (105)
T cd00632 10 QLQQQLQAYIVQRQKVEAQLNEN 32 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555444333
No 262
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=28.42 E-value=9e+02 Score=27.28 Aligned_cols=140 Identities=14% Similarity=0.119 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 325 TAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQ 404 (833)
Q Consensus 325 ~~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLqeLE~ei~~LkkK~~~q~~llk~K~ 404 (833)
.....+.|......+..++..++.+++.+..++... ...-+..+..+..++.++...+.-.....-....-.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~--------~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~ 199 (423)
T TIGR01843 128 IKGQQSLFESRKSTLRAQLELILAQIKQLEAELAGL--------QAQLQALRQQLEVISEELEARRKLKEKGLVSRLELL 199 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhHHHHHHHHHHHHH
Q 003293 405 KSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKEL----LQLRKEGRRNEYERHKLQALNQR 472 (833)
Q Consensus 405 k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~eKEi----~qLKke~rK~~~e~~kLe~~~~k 472 (833)
..+.++..++.++...+.+...+..++.+-...+.........++ ..++.+....+..+..++..-..
T Consensus 200 ~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 200 ELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 263
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=28.18 E-value=1.1e+03 Score=28.28 Aligned_cols=21 Identities=38% Similarity=0.420 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003293 205 DEVQVLKERIAWLEAANEDLC 225 (833)
Q Consensus 205 ~~~~~Lkeki~~Le~ene~L~ 225 (833)
..++...++|..|+.+.+...
T Consensus 309 qqV~qs~EKIa~LEqEKEHw~ 329 (518)
T PF10212_consen 309 QQVQQSQEKIAKLEQEKEHWM 329 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777643
No 264
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=27.82 E-value=1.5e+03 Score=29.55 Aligned_cols=29 Identities=28% Similarity=0.352 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHhHH
Q 003293 591 ARMARISSLENMLSISSNSLVAMASQLSE 619 (833)
Q Consensus 591 ~~~aqI~~Le~~~~~~~~~l~~l~~kl~e 619 (833)
.++++|..|+..++.-+..+..+..+|.+
T Consensus 867 ~r~~el~~l~~~~~~~~~~le~i~~kl~~ 895 (1072)
T KOG0979|consen 867 VREDELRELETKLEKLSEDLERIKDKLSD 895 (1072)
T ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHhh
Confidence 34455555555554444444444444444
No 265
>PRK12704 phosphodiesterase; Provisional
Probab=27.44 E-value=1.1e+03 Score=28.20 Aligned_cols=130 Identities=19% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhh
Q 003293 289 EWEHTLLQNSMDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQT 368 (833)
Q Consensus 289 e~E~~~~Q~~l~~EL~eLnkqLe~KE~e~k~~~~~~~~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~ 368 (833)
+.|......++..++.+...++.++|..+. ++...|+.+...+++...+|...-..+
T Consensus 63 eeE~~~~R~Ele~e~~~~e~~L~qrE~rL~---------------~Ree~Le~r~e~Lekke~eL~~re~~L-------- 119 (520)
T PRK12704 63 KEEIHKLRNEFEKELRERRNELQKLEKRLL---------------QKEENLDRKLELLEKREEELEKKEKEL-------- 119 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 369 QKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASR 445 (833)
Q Consensus 369 ~KL~e~~ekkLqeLE~ei~~LkkK~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~ 445 (833)
+..++.|..++.++..+..++...-.-..--...+.+-.-+..==...+.....+++++.++.+.--.-++..
T Consensus 120 ----e~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~ 192 (520)
T PRK12704 120 ----EQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADKKAKE 192 (520)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 266
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=27.12 E-value=6e+02 Score=30.33 Aligned_cols=26 Identities=19% Similarity=0.033 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHh
Q 003293 592 RMARISSLENMLSISSNSLVAMASQL 617 (833)
Q Consensus 592 ~~aqI~~Le~~~~~~~~~l~~l~~kl 617 (833)
+.++|..|+..+....+.+.+++.++
T Consensus 76 l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 76 LRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666555555555555555544
No 267
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=27.07 E-value=3.3e+02 Score=22.98 Aligned_cols=59 Identities=22% Similarity=0.298 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 333 GKKIAELEDEKRTVQKERDHLLTEIENLASNSDG-QTQKLQDVHAHKLKSLEAQILDLKKKQ 393 (833)
Q Consensus 333 ekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~-~~~KL~e~~ekkLqeLE~ei~~LkkK~ 393 (833)
+..+..|+.++..++.+++.+...|.+-. --+ --..+-+.-+.++..++.++..+....
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n~~--F~~kAP~eVve~er~kl~~~~~~~~~l~~~l 62 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSNEN--FVEKAPEEVVEKEREKLEELEEELEKLEEAL 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSTT--HHHHS-CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcc--ccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666554310 000 001244445677777777777776543
No 268
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=26.66 E-value=5.5e+02 Score=24.27 Aligned_cols=22 Identities=9% Similarity=0.151 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003293 333 GKKIAELEDEKRTVQKERDHLL 354 (833)
Q Consensus 333 ekKi~eLE~ei~~LqkErdeLl 354 (833)
+..-.+++..+..++.+++...
T Consensus 8 ~as~~el~n~La~Le~slE~~K 29 (107)
T PF09304_consen 8 EASQNELQNRLASLERSLEDEK 29 (107)
T ss_dssp ------HHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666555555443
No 269
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=26.50 E-value=9.8e+02 Score=27.10 Aligned_cols=83 Identities=17% Similarity=0.202 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHhhhhhHHHH
Q 003293 406 SDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAA 485 (833)
Q Consensus 406 ~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~eKEi~qLKke~rK~~~e~~kLe~~~~kQ~~VLkRKtEEa~ 485 (833)
.|.-+.++.+|-+.++-+-..+++..+|..++... +.+|++. ..+..+---..-++.+..|..+|+.+..-..
T Consensus 132 LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~----LnrELaE---~layqq~L~~eyQatf~eq~~ml~kRQ~yI~ 204 (401)
T PF06785_consen 132 LEGLIRHLREENQCLQLQLDALQQECGEKEEESQT----LNRELAE---ALAYQQELNDEYQATFVEQHSMLDKRQAYIG 204 (401)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHH----HHHHHHH---HHHHHHHHHHHhhcccccchhhhHHHHHHHH
Confidence 34444455555555555555555555555444433 3333221 1111111112233445567777777777777
Q ss_pred HHHHHHHHHH
Q 003293 486 MATKRLKELL 495 (833)
Q Consensus 486 aa~kRLK~~l 495 (833)
....+..|+.
T Consensus 205 ~LEsKVqDLm 214 (401)
T PF06785_consen 205 KLESKVQDLM 214 (401)
T ss_pred HHHHHHHHHH
Confidence 6666666533
No 270
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=26.45 E-value=1.1e+03 Score=27.64 Aligned_cols=31 Identities=10% Similarity=0.200 Sum_probs=14.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 403 KQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQ 433 (833)
Q Consensus 403 K~k~E~~ik~L~~EIq~mK~qKv~L~kkmke 433 (833)
..+.+++-..+...+......++++-.++-+
T Consensus 199 lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~ 229 (447)
T KOG2751|consen 199 LEELEKEEAELDHQLKELEFKAERLNEEEDQ 229 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344445555555555555444433
No 271
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=26.30 E-value=3.6e+02 Score=23.16 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 333 GKKIAELEDEKRTVQKERDHLLTE 356 (833)
Q Consensus 333 ekKi~eLE~ei~~LqkErdeLl~e 356 (833)
+..|.+||.++.-.+.-+++|...
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~ 26 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDV 26 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555433
No 272
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=26.17 E-value=8.2e+02 Score=26.08 Aligned_cols=70 Identities=17% Similarity=0.202 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 371 LQDVHAHKLKSLEAQILDLKKKQEN-----QVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQ 440 (833)
Q Consensus 371 L~e~~ekkLqeLE~ei~~LkkK~~~-----q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~ 440 (833)
.....+.....|..+|..|...... ..+-...-.+.+.-...+...|..-+..+..-...++.+.+....
T Consensus 115 r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~ 189 (247)
T PF06705_consen 115 RPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKR 189 (247)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555666666666543333 111222233344444555555555555555555555555554444
No 273
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=25.95 E-value=3.5e+02 Score=25.62 Aligned_cols=55 Identities=15% Similarity=0.276 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 639 MADAKNLLQYMFNSLADARCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEE 693 (833)
Q Consensus 639 ~~eAk~~l~~L~~~~~~~r~~~~~~~~el~e~k~~~~~l~~~l~~~e~q~~~l~~ 693 (833)
...|-.++.||+..=...-......+.++..+...+..+...+++...+...|.+
T Consensus 61 frLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 61 FRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666665544444445556666666666666666555554444444433
No 274
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=25.93 E-value=1.4e+03 Score=28.57 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003293 375 HAHKLKSLEAQILDLKKKQEN 395 (833)
Q Consensus 375 ~ekkLqeLE~ei~~LkkK~~~ 395 (833)
..+++..|..++..|+++...
T Consensus 239 ~~~~i~~l~~~l~~l~~~~~~ 259 (670)
T KOG0239|consen 239 IKKKIQALQQELEELKAELKE 259 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344466666666666554443
No 275
>PRK11020 hypothetical protein; Provisional
Probab=25.51 E-value=4.5e+02 Score=25.10 Aligned_cols=48 Identities=23% Similarity=0.298 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHH
Q 003293 300 DKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQ 347 (833)
Q Consensus 300 ~~EL~eLnkqLe~KE~e~k~~~~~~~~~lkq~yekKi~eLE~ei~~Lq 347 (833)
..|++.|+..|+.-...+..........+-.+|.+.+..|+.+|..+.
T Consensus 4 K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk 51 (118)
T PRK11020 4 KNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLK 51 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666655444333322222333344444555555544444443
No 276
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=25.38 E-value=8e+02 Score=25.69 Aligned_cols=84 Identities=20% Similarity=0.314 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH---hcCCchHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccCchh
Q 003293 297 NSMDKELNELNRRLEEKESEMKL---VGGSDTAALKQHFGKKIAELEDEKRTVQ-------KERDHLLTEIENLASNSDG 366 (833)
Q Consensus 297 ~~l~~EL~eLnkqLe~KE~e~k~---~~~~~~~~lkq~yekKi~eLE~ei~~Lq-------kErdeLl~eL~~~~~~~~~ 366 (833)
..|..||.+|+..|...+..... ........++.+|++-+.=.+.++..++ .-...+...|..+ .+
T Consensus 99 vrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~i----e~ 174 (195)
T PF12761_consen 99 VRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTI----EE 174 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHH----HH
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 003293 367 QTQKLQDVHAHKLKSLEA 384 (833)
Q Consensus 367 ~~~KL~e~~ekkLqeLE~ 384 (833)
+..-|......|=++|+.
T Consensus 175 QV~~Le~~L~~k~~eL~~ 192 (195)
T PF12761_consen 175 QVDGLESHLSSKKQELQQ 192 (195)
T ss_pred HHHHHHHHHHHHHHHHHH
No 277
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=25.21 E-value=7.8e+02 Score=25.52 Aligned_cols=92 Identities=24% Similarity=0.395 Sum_probs=46.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 323 SDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQ 402 (833)
Q Consensus 323 ~~~~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLqeLE~ei~~LkkK~~~q~~llk~ 402 (833)
.+...++.... ++-.+...-..+..+++.+...+... .-.....+..+.+||..|.+|+... ..+-..
T Consensus 86 FnV~~l~~RL~-kLL~lk~~~~~~~e~~k~le~~~~~~--------~~~~~~~e~~i~~Le~ki~el~~~~---~~~~~~ 153 (190)
T PF05266_consen 86 FNVKFLRSRLN-KLLSLKDDQEKLLEERKKLEKKIEEK--------EAELKELESEIKELEMKILELQRQA---AKLKEK 153 (190)
T ss_pred CccHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHH--------HHhhhhHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 44444444432 24444455555555555555544332 0012224555666666666655321 123345
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q 003293 403 KQKSDEAAKRLQDEIQFIKAQKVQ 426 (833)
Q Consensus 403 K~k~E~~ik~L~~EIq~mK~qKv~ 426 (833)
++..+.++.+|+.++..++..-+.
T Consensus 154 ke~~~~ei~~lks~~~~l~~~~~~ 177 (190)
T PF05266_consen 154 KEAKDKEISRLKSEAEALKEEIEN 177 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666677666666666655444
No 278
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=25.17 E-value=2.3e+02 Score=28.40 Aligned_cols=54 Identities=24% Similarity=0.318 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 338 ELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQE 394 (833)
Q Consensus 338 eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLqeLE~ei~~LkkK~~ 394 (833)
..-.+.+.++.|++++..++...++ .|+-++=.+ .++++..++.|+.++++...
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~-qDeFAkwaK--l~Rk~~kl~~el~~~~~~~~ 90 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISA-QDEFAKWAK--LNRKLDKLEEELEKLNKSLS 90 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-T-TTSHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCc-HHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3445667788888888888887754 344433222 46777777777777765433
No 279
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=25.09 E-value=7.3e+02 Score=25.13 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHhhh
Q 003293 442 KASREKELLQLRKEGRR 458 (833)
Q Consensus 442 k~~~eKEi~qLKke~rK 458 (833)
....+.+|..||.+-..
T Consensus 133 ~~ki~~ei~~lr~~iE~ 149 (177)
T PF07798_consen 133 NNKIDTEIANLRTEIES 149 (177)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344455555554443
No 280
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=24.42 E-value=1e+03 Score=26.58 Aligned_cols=61 Identities=18% Similarity=0.308 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 379 LKSLEAQILDLKKKQE----NQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFR 439 (833)
Q Consensus 379 LqeLE~ei~~LkkK~~----~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r 439 (833)
+.+|-.++.++..|+. ..++|-..|...--++..|...|..|...-.++++..++....|.
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elE 143 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELE 143 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555544444 356677777777778888888888888888888888865444333
No 281
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=24.39 E-value=1.1e+03 Score=27.04 Aligned_cols=26 Identities=15% Similarity=0.067 Sum_probs=15.0
Q ss_pred CCCcceeEEeecCCCCCCHHHHHHHH
Q 003293 132 GGNSRTVMIACISPADINAEETLNTL 157 (833)
Q Consensus 132 gGns~t~mI~~VSP~~~~~~ETlsTL 157 (833)
.+++.++-|..-+|...-.....+++
T Consensus 128 ~~~s~ii~is~~~~dp~~A~~i~n~~ 153 (444)
T TIGR03017 128 SRESSVISIEFSGVDPRFAATVANAF 153 (444)
T ss_pred cCCceEEEEEEeCCCHHHHHHHHHHH
Confidence 45666666666666655444445544
No 282
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=24.30 E-value=2.6e+02 Score=32.97 Aligned_cols=82 Identities=17% Similarity=0.155 Sum_probs=52.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhcCCCCCCCCCcccccccCChhhHHHHHHHHHHHHhhch
Q 003293 528 DHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQVDEFASKGLSPPRGKNGFARVSSMSPNARMARISSLENMLSISS 607 (833)
Q Consensus 528 e~e~ev~~~~~e~~~~le~l~~~R~~L~~el~~Lk~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~aqI~~Le~~~~~~~ 607 (833)
|.=..+...+.+++..++.+..+.+.|..|.+.|+++......... ..+.+. ......++..|.+......
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~--------~av~~~-~~~~~~~~~ql~~~~~~~~ 129 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQ--------QAVQSE-TQELTKEIEQLKSERQQLQ 129 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--------HHHHhh-hHHHHHHHHHHHHHHHHHH
Confidence 4455677789999999999999999999999999886443322000 000011 1123446666666666666
Q ss_pred HHHHHHHHHhH
Q 003293 608 NSLVAMASQLS 618 (833)
Q Consensus 608 ~~l~~l~~kl~ 618 (833)
+.|.+|+.++.
T Consensus 130 ~~l~~l~~~l~ 140 (472)
T TIGR03752 130 GLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHh
Confidence 77777777663
No 283
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=24.24 E-value=2e+02 Score=26.18 Aligned_cols=34 Identities=32% Similarity=0.645 Sum_probs=0.0
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 326 AALK----QHFGKKIAELEDEKRTVQKERDHLLTEIEN 359 (833)
Q Consensus 326 ~~lk----q~yekKi~eLE~ei~~LqkErdeLl~eL~~ 359 (833)
..|+ ..|+++|.+|+.++..+..|.+.|..+|..
T Consensus 37 ~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~ 74 (87)
T PF12709_consen 37 KALKKSYEARWEKKVDELENENKALKRENEQLKKKLDT 74 (87)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 284
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=24.16 E-value=1e+03 Score=26.63 Aligned_cols=87 Identities=23% Similarity=0.218 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHH
Q 003293 299 MDKELNELNRRLEEKESEMKLVGG----SDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDV 374 (833)
Q Consensus 299 l~~EL~eLnkqLe~KE~e~k~~~~----~~~~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~ 374 (833)
+++++.++..++...+..+..|.. .+...-.......+.+|+.++..++.+...+.... .+..-.+..
T Consensus 175 l~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~-------~~~~P~v~~- 246 (362)
T TIGR01010 175 AENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSIT-------PEQNPQVPS- 246 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-------CCCCCchHH-
Confidence 456666666666666666655542 12222222344556777777766666665543221 111222222
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003293 375 HAHKLKSLEAQILDLKKKQ 393 (833)
Q Consensus 375 ~ekkLqeLE~ei~~LkkK~ 393 (833)
.+.++..++.+|....++.
T Consensus 247 l~~~i~~l~~~i~~e~~~i 265 (362)
T TIGR01010 247 LQARIKSLRKQIDEQRNQL 265 (362)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3456667777776665544
No 285
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=24.08 E-value=8.5e+02 Score=25.54 Aligned_cols=65 Identities=12% Similarity=0.290 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 373 DVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREK 447 (833)
Q Consensus 373 e~~ekkLqeLE~ei~~LkkK~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~eK 447 (833)
+.|.+++-.++.+|..+.-|+.+ .+........-|+.+..+.-.|..++-...+++...+..+..
T Consensus 133 e~~~q~~d~~e~~ik~ltdKLkE----------aE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~ 197 (205)
T KOG1003|consen 133 EKLEQKEEKYEEELKELTDKLKE----------AETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDE 197 (205)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhh----------hhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34555555666666665544332 233344444555566666666666666666666665555444
No 286
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=23.80 E-value=8.2e+02 Score=25.24 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=15.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 400 LKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQF 438 (833)
Q Consensus 400 lk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~ 438 (833)
+........++..|+.++.....-=-..+.+|+++....
T Consensus 109 l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~ 147 (188)
T PF03962_consen 109 LEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIA 147 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 333333334444444444433333333344444443333
No 287
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=23.51 E-value=9.4e+02 Score=29.19 Aligned_cols=10 Identities=30% Similarity=0.707 Sum_probs=4.1
Q ss_pred hhhhhcccCC
Q 003293 123 LTRLLQDSLG 132 (833)
Q Consensus 123 LTrLLqdsLg 132 (833)
+++.+...+|
T Consensus 33 ie~~~seatG 42 (555)
T TIGR03545 33 IERSLEKAFG 42 (555)
T ss_pred HHHHHHHHHC
Confidence 3344444444
No 288
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.46 E-value=3.4e+02 Score=29.31 Aligned_cols=70 Identities=19% Similarity=0.352 Sum_probs=40.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Q 003293 291 EHTLLQNSMDKELNELNRRLEEKESEMKLVGGSDTAAL--KQHFGKKIAELEDE-KRTVQKERDHLLTEIENLA 361 (833)
Q Consensus 291 E~~~~Q~~l~~EL~eLnkqLe~KE~e~k~~~~~~~~~l--kq~yekKi~eLE~e-i~~LqkErdeLl~eL~~~~ 361 (833)
+|...+..|..|+.-|.+.|.+|..++-.-... ...| .+.|...+..+..+ +..|++++++++.++..+.
T Consensus 222 dh~V~i~~lkeeia~Lkk~L~qkdq~ileKdkq-isnLKad~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~ 294 (305)
T KOG3990|consen 222 DHMVKIQKLKEEIARLKKLLHQKDQLILEKDKQ-ISNLKADKEYQKELEKKHKERVQQLQKKKEESLKAIAQLR 294 (305)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhh-hhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455567778888888888888777655322110 0001 14555555555544 6666777777766666553
No 289
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=23.38 E-value=6.2e+02 Score=23.74 Aligned_cols=51 Identities=29% Similarity=0.328 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHH-HH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 380 KSLEAQILDLKKKQE-NQ---VQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHR 430 (833)
Q Consensus 380 qeLE~ei~~LkkK~~-~q---~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kk 430 (833)
..|..+...|++..- +| ..|...-...|..+.++..|+..+.-..-+|.++
T Consensus 8 sKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kR 62 (102)
T PF10205_consen 8 SKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKR 62 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666665322 22 2233333445666666666666665555554444
No 290
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=23.37 E-value=1.1e+03 Score=26.81 Aligned_cols=18 Identities=11% Similarity=0.302 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003293 409 AAKRLQDEIQFIKAQKVQ 426 (833)
Q Consensus 409 ~ik~L~~EIq~mK~qKv~ 426 (833)
.+..+..++..+|.+-..
T Consensus 302 ~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 302 ELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 291
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=23.30 E-value=1.5e+03 Score=28.11 Aligned_cols=6 Identities=17% Similarity=0.041 Sum_probs=2.3
Q ss_pred CCCcce
Q 003293 132 GGNSRT 137 (833)
Q Consensus 132 gGns~t 137 (833)
||..++
T Consensus 105 ~~K~k~ 110 (811)
T KOG4364|consen 105 KLKEKT 110 (811)
T ss_pred cCcccc
Confidence 443333
No 292
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=23.20 E-value=7.1e+02 Score=24.32 Aligned_cols=60 Identities=20% Similarity=0.264 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 003293 328 LKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLK 390 (833)
Q Consensus 328 lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLqeLE~ei~~Lk 390 (833)
+...|...+..++.+...|+-+..+++.+.... +.....-++..+++..+.+..++..+.
T Consensus 21 l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~---~~~~~~~i~~q~~~e~~~r~e~k~~l~ 80 (131)
T PF11068_consen 21 LLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQ---NAQQIQSIQQQFEQEKQERLEQKNQLL 80 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---SSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777766666665422 112333444444444444444444433
No 293
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=23.09 E-value=1.1e+03 Score=26.55 Aligned_cols=30 Identities=37% Similarity=0.580 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 327 ALKQHFGKKIAELEDEKRTVQKERDHLLTE 356 (833)
Q Consensus 327 ~lkq~yekKi~eLE~ei~~LqkErdeLl~e 356 (833)
.....|++||..|+++..-+-+||+.|..+
T Consensus 33 ~~~~~~e~~~~~l~~~~~~~~~~~~~~~~q 62 (328)
T PF15369_consen 33 AEQESFEKKIRQLEEQNELIIKEREDLQQQ 62 (328)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456789999999999988888888887643
No 294
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.04 E-value=1.1e+03 Score=26.37 Aligned_cols=80 Identities=20% Similarity=0.365 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 003293 325 TAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQL----- 399 (833)
Q Consensus 325 ~~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLqeLE~ei~~LkkK~~~q~~l----- 399 (833)
.-.+.+.|+.|-.+...+...-+.| +++..-+|+++-|.++.+-.+.....-..
T Consensus 317 p~s~qet~eaKr~e~~~e~qrkEee---------------------~rqmFvqrvkekE~elke~Ekel~~kf~~lkr~h 375 (406)
T KOG3859|consen 317 PFSLQETYEAKRNEFLGELQRKEEE---------------------MRQMFVQRVKEKEAELKEAEKELHEKFDRLKRLH 375 (406)
T ss_pred CccHHHHHHHHHHHHHHHHHHhHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777766654443332222 22334455555555555444433322111
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003293 400 LKQKQKSDEAAKRLQDEIQFIKAQKV 425 (833)
Q Consensus 400 lk~K~k~E~~ik~L~~EIq~mK~qKv 425 (833)
..++.+.|++.+.|.+|+....+.+.
T Consensus 376 ~eEk~kle~~rr~Leee~~~f~~rk~ 401 (406)
T KOG3859|consen 376 QEEKKKLEEKRKQLEEEVNAFQRRKT 401 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22455566666666666655554443
No 295
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=23.04 E-value=74 Score=30.20 Aligned_cols=59 Identities=25% Similarity=0.238 Sum_probs=40.1
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 003293 653 LADARCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSAS 711 (833)
Q Consensus 653 ~~~~r~~~~~~~~el~e~k~~~~~l~~~l~~~e~q~~~l~~~~~~~~~~~~~~l~~~~~ 711 (833)
++........+..++..++.....++..|...+.|..+|...+..++.++.-+++....
T Consensus 52 Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE~~~~~l~~~~~~ 110 (116)
T PF05064_consen 52 LVENGEKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLEKQVEKLLSNQSS 110 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCTT---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666667777778888888888888888888888888888888888888777766533
No 296
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=22.94 E-value=4.7e+02 Score=22.10 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 003293 341 DEKRTVQKERDHLLTE 356 (833)
Q Consensus 341 ~ei~~LqkErdeLl~e 356 (833)
.++..|+++++.+...
T Consensus 4 ~E~~rL~Kel~kl~~~ 19 (66)
T PF10458_consen 4 AEIERLEKELEKLEKE 19 (66)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 297
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=22.83 E-value=2.3e+02 Score=35.26 Aligned_cols=85 Identities=18% Similarity=0.154 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcccchh----ccccCCCCCCC--Ccccccc
Q 003293 665 IEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSASGNLHNSLEH----FADDTSGPPSP--MSVPAQK 738 (833)
Q Consensus 665 ~el~e~k~~~~~l~~~l~~~e~q~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~ 738 (833)
.++-++++++..++.+|++...-.+.|....-.+.|-..++=.+..--....+..+ .+++.++++.. ...-.+.
T Consensus 92 ~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL~E~~~vl~~t~~Ff~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (829)
T KOG2189|consen 92 REIIDLEEQLEKLESELRELNANKEALKANYNELLELKYVLEKTDEFFSTSVQESFEDDETADLGEGPLESAEKGPFDGL 171 (829)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhcchhhhhhcccccchhccCCCCcc
Confidence 44555666666666666666665555555554444444443333211111011111 12222333321 2122234
Q ss_pred ccccccCccCC
Q 003293 739 QLKYTPGIANG 749 (833)
Q Consensus 739 ~~~~~~~~~~~ 749 (833)
+|+|..||+|-
T Consensus 172 ~l~FvaGvI~r 182 (829)
T KOG2189|consen 172 KLGFVAGVINR 182 (829)
T ss_pred cceeEEeeech
Confidence 89999999883
No 298
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=22.83 E-value=1.6e+03 Score=28.34 Aligned_cols=18 Identities=39% Similarity=0.322 Sum_probs=11.0
Q ss_pred CCCCcccCcceeeeEEEE
Q 003293 17 TNMNNQSSRSHAIFTITL 34 (833)
Q Consensus 17 T~~N~~SSRSHaIfti~i 34 (833)
|--|..|||---++.||.
T Consensus 197 T~RNNNSSRFGKFveiHf 214 (1259)
T KOG0163|consen 197 TLRNNNSSRFGKFVEIHF 214 (1259)
T ss_pred hhccCChhhccceEEEEE
Confidence 555666666666666655
No 299
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=22.64 E-value=2.4e+02 Score=36.69 Aligned_cols=63 Identities=22% Similarity=0.347 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 332 FGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQEN 395 (833)
Q Consensus 332 yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLqeLE~ei~~LkkK~~~ 395 (833)
+++.+..|+.++..+++|.+.+...|.+-.= ....-..+.+.-+.|+.+++.++..+++....
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F-~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~~ 989 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKISIPNY-EDKVPEDVRKLNDEKIDELNEEIKQLEQAIEE 989 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchh-hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777888888888888888777765310 00011234444567888888888888765554
No 300
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=22.41 E-value=9.6e+02 Score=25.53 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003293 410 AKRLQDEIQFIKAQKVQLQHRI 431 (833)
Q Consensus 410 ik~L~~EIq~mK~qKv~L~kkm 431 (833)
...++.|..++......|+.++
T Consensus 188 ~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 188 SEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHcccHHHHHHHHHHHHHHHH
Confidence 3345555555555555555554
No 301
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.39 E-value=9.8e+02 Score=25.64 Aligned_cols=37 Identities=16% Similarity=0.297 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003293 386 ILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKA 422 (833)
Q Consensus 386 i~~LkkK~~~q~~llk~K~k~E~~ik~L~~EIq~mK~ 422 (833)
+..+..-..+..+...++.+.+.....+.+||...++
T Consensus 64 ~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~ 100 (246)
T KOG4657|consen 64 KADLRETENELVKVNELKTEKEARQMGIEQEIKATQS 100 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444433
No 302
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=22.26 E-value=1.4e+02 Score=25.10 Aligned_cols=26 Identities=12% Similarity=0.218 Sum_probs=12.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 663 KDIEIKEMKEQLKELVGLLRQSEVRR 688 (833)
Q Consensus 663 ~~~el~e~k~~~~~l~~~l~~~e~q~ 688 (833)
+|.+|..|+.++.+.+.+++..|.+-
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~ 55 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARA 55 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433
No 303
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=22.10 E-value=2.2e+02 Score=25.65 Aligned_cols=49 Identities=27% Similarity=0.337 Sum_probs=34.8
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H---HHHHHHHHHHHhhh
Q 003293 661 WEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEE-----L---KLREQAVAITLARS 709 (833)
Q Consensus 661 ~~~~~el~e~k~~~~~l~~~l~~~e~q~~~l~~~-----~---~~~~~~~~~~l~~~ 709 (833)
..+..+|..+++++.+++.+|+.++.|..+++.- . ..--++++.+|...
T Consensus 4 eKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~EIv~~VR~~~mtp~eL~~~L~~~ 60 (83)
T PF14193_consen 4 EKIRAEIEKTKEKIAELQARLKELEAQKTEAENLEIVQMVRSMKMTPEELAAFLRAM 60 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3466778888899999999998888888775432 2 22346777777765
No 304
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=21.93 E-value=8.9e+02 Score=25.00 Aligned_cols=70 Identities=21% Similarity=0.326 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003293 332 FGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEA 409 (833)
Q Consensus 332 yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLqeLE~ei~~LkkK~~~q~~llk~K~k~E~~ 409 (833)
+..-+..+|.++..++...+++-..+..... . .-.....+..|+..|..|..|...--+++.-..+...+
T Consensus 77 vA~lvinlE~kvD~lee~fdd~~d~l~~q~e----q----~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~ 146 (189)
T TIGR02132 77 VASLVINLEEKVDLIEEFFDDKFDELEAQQE----Q----APALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQDE 146 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----h----CchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhH
Confidence 3455666677777776666666655542111 0 11134566777777777777776655555544444333
No 305
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=21.66 E-value=6.7e+02 Score=23.47 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=22.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 400 LKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRI 431 (833)
Q Consensus 400 lk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkm 431 (833)
.+.+...+.+|+.|..+|..|+..+.++...+
T Consensus 73 ~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l 104 (126)
T PF13863_consen 73 KKKKEEKEAEIKKLKAELEELKSEISKLEEKL 104 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777888888888887777766654
No 306
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=21.32 E-value=5.6e+02 Score=23.87 Aligned_cols=90 Identities=23% Similarity=0.240 Sum_probs=55.7
Q ss_pred hHHHhhhhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHhH----------------HhHHHHHHHHHHHHHHHH
Q 003293 617 LSEAEERDRLFTNRGRWNQLRSMADAKNLLQYMFNSLADARCQLWE----------------KDIEIKEMKEQLKELVGL 680 (833)
Q Consensus 617 l~e~ee~~r~~~~~~rw~~irs~~eAk~~l~~L~~~~~~~r~~~~~----------------~~~el~e~k~~~~~l~~~ 680 (833)
|.+..+.++.+-....|+.+..+...|..+-.-+..+...|..... ...++..+...+..+-..
T Consensus 20 L~~ll~~e~~~l~~~d~~~l~~~~~~k~~l~~~l~~le~~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~ 99 (143)
T PF05130_consen 20 LLELLEEEREALISGDIDELEELVEEKQELLEELRELEKQRQQLLAKLGAEPEEATLSELIEEREELQALWRELRELLEE 99 (143)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3444443333333456888888888888888888888887776555 345666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 681 LRQSEVRRKEVEEELKLREQAVAITL 706 (833)
Q Consensus 681 l~~~e~q~~~l~~~~~~~~~~~~~~l 706 (833)
++.....+..+.......-..+.-.+
T Consensus 100 ~~~~n~~N~~ll~~~~~~~~~~l~~l 125 (143)
T PF05130_consen 100 LQELNERNQQLLEQALEFVQQLLNLL 125 (143)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666665544444444433333
No 307
>PRK11546 zraP zinc resistance protein; Provisional
Probab=21.03 E-value=7.3e+02 Score=24.68 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 287 AKEWEHTLLQNSMDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIEN 359 (833)
Q Consensus 287 ake~E~~~~Q~~l~~EL~eLnkqLe~KE~e~k~~~~~~~~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~ 359 (833)
++......+..++..+...|..+|-.|..|+..+.......- ++|..|..||.+|+...+++.-++..
T Consensus 47 EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~-----~kI~aL~kEI~~Lr~kL~e~r~~~~~ 114 (143)
T PRK11546 47 EQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDS-----SKINAVAKEMENLRQSLDELRVKRDI 114 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
No 308
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=20.85 E-value=8.4e+02 Score=24.31 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Q 003293 297 NSMDKELNELNRRLEEKESEMKLVG 321 (833)
Q Consensus 297 ~~l~~EL~eLnkqLe~KE~e~k~~~ 321 (833)
..+..++.+|..++...++++..+.
T Consensus 82 ~~L~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 82 KELREELAELKKEVKSLEAELASLS 106 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666666666666665554
No 309
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=20.74 E-value=9.3e+02 Score=28.70 Aligned_cols=30 Identities=20% Similarity=0.312 Sum_probs=15.3
Q ss_pred cCCCccceeccccccceeeceecccCcchh
Q 003293 779 GQGGKLWRWKRSHHQWLLQFKWKWQKPWRL 808 (833)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 (833)
|.+|-+.++...-+.|-+..+=.=..||.+
T Consensus 431 ~~~G~~~~~~~~~~~~~i~v~N~~~~~v~v 460 (525)
T TIGR02231 431 DEGGLIGNTSRTEYAYRITLKNLRKEPERV 460 (525)
T ss_pred ccCceecccEEEEEEEEEEEEcCCCCceEE
Confidence 445555555444444544444444556655
No 310
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=20.74 E-value=6.8e+02 Score=23.21 Aligned_cols=79 Identities=30% Similarity=0.405 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--C-chh-hhhHHHHHHHHHH
Q 003293 304 NELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLAS--N-SDG-QTQKLQDVHAHKL 379 (833)
Q Consensus 304 ~eLnkqLe~KE~e~k~~~~~~~~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~--~-~~~-~~~KL~e~~ekkL 379 (833)
.+|.++|.--+++..++. ++|.+++.+.+.+..|..+.........+ . +.. .-.-........|
T Consensus 4 aeLR~qLqFvEEEa~LlR------------Rkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eL 71 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLR------------RKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEEL 71 (96)
T ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHH
Confidence 356667776776665555 78888888888888887777654422210 0 000 0011112345566
Q ss_pred HHHHHHHHHHHHHHH
Q 003293 380 KSLEAQILDLKKKQE 394 (833)
Q Consensus 380 qeLE~ei~~LkkK~~ 394 (833)
+..+.+|..|..|..
T Consensus 72 k~a~~qi~~Ls~kv~ 86 (96)
T PF11365_consen 72 KLAREQINELSGKVM 86 (96)
T ss_pred HHHHHHHHHHhhHHH
Confidence 777777777765543
No 311
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=20.60 E-value=1.2e+03 Score=25.98 Aligned_cols=55 Identities=27% Similarity=0.483 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 332 FGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQE 394 (833)
Q Consensus 332 yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~~KL~e~~ekkLqeLE~ei~~LkkK~~ 394 (833)
--.++.+|.+++..+-.++|++..++..+- .-..+...++++|-.++..+..+..
T Consensus 46 ln~kvrE~~e~~~elr~~rdeineev~elK--------~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 46 LNAKVRELREKAQELREERDEINEEVQELK--------EKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 335666666666666666666666655442 1122334455555555555554444
No 312
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=20.57 E-value=4.9e+02 Score=26.49 Aligned_cols=58 Identities=26% Similarity=0.457 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003293 298 SMDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENL 360 (833)
Q Consensus 298 ~l~~EL~eLnkqLe~KE~e~k~~~~~~~~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~ 360 (833)
+|..||+|...+|.+|=+|++.+. ..|...| .|+.+.-+-.+.+|+..|+-+.-|-++
T Consensus 51 eLkNeLREVREELkEKmeEIKQIK----diMDKDF-DKL~EFVEIMKeMQkDMDEKMDvLiNi 108 (205)
T PF15079_consen 51 ELKNELREVREELKEKMEEIKQIK----DIMDKDF-DKLHEFVEIMKEMQKDMDEKMDVLINI 108 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhH-HHHHHHHHHHHHHHHhHHHhhhHHhhc
Confidence 467888888888888888887765 3455566 567788777888888888887776555
No 313
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=20.16 E-value=1.5e+03 Score=27.08 Aligned_cols=130 Identities=17% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhh
Q 003293 289 EWEHTLLQNSMDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQT 368 (833)
Q Consensus 289 e~E~~~~Q~~l~~EL~eLnkqLe~KE~e~k~~~~~~~~~lkq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~~~~~~~~ 368 (833)
+.|.......+..++.+...+|.++|..+. ++...|+.+...+++....|...-..+
T Consensus 57 eeE~~~~R~Ele~el~~~e~rL~qrE~rL~---------------qRee~Lekr~e~Lekre~~Le~ke~~L-------- 113 (514)
T TIGR03319 57 KEEVHKLRAELERELKERRNELQRLERRLL---------------QREETLDRKMESLDKKEENLEKKEKEL-------- 113 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003293 369 QKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASR 445 (833)
Q Consensus 369 ~KL~e~~ekkLqeLE~ei~~LkkK~~~q~~llk~K~k~E~~ik~L~~EIq~mK~qKv~L~kkmkeE~ek~r~~k~~~ 445 (833)
+.++..|.+++.++..+..++...-.-..--...+.+-.-|..=-...+.....+++++.++.+.--.-++..
T Consensus 114 ----~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~eak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~ 186 (514)
T TIGR03319 114 ----SNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEAKEEADKKAKE 186 (514)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 314
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=20.07 E-value=1.5e+03 Score=26.85 Aligned_cols=87 Identities=30% Similarity=0.375 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------cCchh---hhhHHHHHHHHHHHHHHHHHHHHHH
Q 003293 329 KQHFGKKIAELEDEKRTVQKERDHLLTEIENLA--------------SNSDG---QTQKLQDVHAHKLKSLEAQILDLKK 391 (833)
Q Consensus 329 kq~yekKi~eLE~ei~~LqkErdeLl~eL~~~~--------------~~~~~---~~~KL~e~~ekkLqeLE~ei~~Lkk 391 (833)
..||-+---.+.+-++.--.||++|+..|+.-+ +.++. -..|-.+.-..-|++|..|+.+|..
T Consensus 84 sSHFAqVQfRirQ~vea~p~er~~LLrdLedFAF~Gcpd~~~lq~~~s~~~~~~~~lekq~e~qkeLi~QLk~Ql~dLE~ 163 (621)
T KOG3759|consen 84 SSHFAQVQFRIRQMVEADPSERLKLLRDLEDFAFKGCPDMNELQRLRSESESGNDVLEKQNERQKELIKQLKEQLEDLER 163 (621)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCcccccccccccccccchhhhhhcchHHHHHHHHHHHHHHHHH
Confidence 334433323333445555678888888777633 11111 1122233334568889999999975
Q ss_pred -HHHH-------HHHHHHHHHhHHHHHHHHHH
Q 003293 392 -KQEN-------QVQLLKQKQKSDEAAKRLQD 415 (833)
Q Consensus 392 -K~~~-------q~~llk~K~k~E~~ik~L~~ 415 (833)
.+.+ +.-|.|+|.-.++-+++|.-
T Consensus 164 ~AYe~Geg~LPq~viLekQk~ilDeLr~Kl~l 195 (621)
T KOG3759|consen 164 TAYENGEGELPQTVILEKQKAILDELREKLEL 195 (621)
T ss_pred HHHhcCCCcCchHHHHHHHHHHHHHHHHHhhc
Confidence 3332 45566677666666666543
Done!