Query 003294
Match_columns 833
No_of_seqs 191 out of 591
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 20:16:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003294.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003294hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qk1_A Protein STU2; STU2P, XM 91.2 0.45 1.5E-05 49.2 8.0 141 208-375 22-172 (249)
2 2qk2_A LP04448P; mini spindles 90.3 2.5 8.7E-05 42.4 12.6 125 180-338 75-206 (242)
3 1b3u_A Protein (protein phosph 89.2 20 0.00068 39.8 20.0 69 271-339 242-312 (588)
4 1ibr_B P95, importin beta-1 su 89.0 1.1 3.8E-05 48.4 9.3 114 203-339 129-248 (462)
5 2of3_A ZYG-9; multifunctional 87.7 4.2 0.00014 42.9 12.3 158 186-376 67-234 (266)
6 2qk2_A LP04448P; mini spindles 85.1 20 0.00067 35.7 15.4 143 202-376 56-203 (242)
7 2vgl_B AP-2 complex subunit be 85.1 59 0.002 37.2 22.7 112 195-340 79-192 (591)
8 2qk1_A Protein STU2; STU2P, XM 84.7 7 0.00024 40.1 12.0 132 203-338 61-221 (249)
9 2vgl_A Adaptor protein complex 84.5 7.4 0.00025 45.4 13.5 162 165-362 16-200 (621)
10 2bpt_A Importin beta-1 subunit 83.8 2.8 9.6E-05 49.3 9.6 117 203-340 135-256 (861)
11 4db8_A Armadillo-repeat protei 80.9 4 0.00014 40.5 8.1 110 203-339 97-211 (252)
12 4ffb_C Protein STU2; tubulin f 79.8 19 0.00064 37.0 13.1 145 207-376 60-210 (278)
13 1qgr_A Protein (importin beta 79.0 3.6 0.00012 48.5 8.3 114 203-339 129-248 (876)
14 4fdd_A Transportin-1; heat rep 78.6 4.1 0.00014 48.6 8.7 115 202-339 128-246 (852)
15 4hxt_A De novo protein OR329; 77.0 7.6 0.00026 37.9 8.8 163 187-376 24-197 (252)
16 1b3u_A Protein (protein phosph 76.6 8.5 0.00029 42.8 10.0 132 203-338 403-549 (588)
17 1u6g_C TIP120 protein, CAND1; 76.1 11 0.00039 46.8 11.9 111 203-339 7-117 (1230)
18 1xqr_A HSPBP1 protein; armadil 76.1 19 0.00066 38.0 12.1 95 282-376 138-236 (296)
19 4hxt_A De novo protein OR329; 75.3 6.3 0.00021 38.6 7.6 147 203-376 87-239 (252)
20 4db6_A Armadillo repeat protei 74.8 7.2 0.00025 37.5 7.8 110 202-338 54-168 (210)
21 1w63_A Adapter-related protein 73.4 27 0.00092 40.4 13.5 87 282-376 363-449 (618)
22 1w63_A Adapter-related protein 71.2 21 0.00072 41.4 11.8 56 281-340 119-174 (618)
23 3b2a_A TON_1937, putative unch 70.9 1E+02 0.0036 32.2 15.4 155 185-376 20-177 (265)
24 2vgl_B AP-2 complex subunit be 69.4 9 0.00031 44.1 8.1 139 204-376 123-266 (591)
25 1xqr_A HSPBP1 protein; armadil 62.8 45 0.0015 35.2 11.4 58 281-338 179-239 (296)
26 1wa5_B Importin alpha subunit; 56.8 21 0.00073 39.8 8.0 67 272-338 216-287 (530)
27 4db6_A Armadillo repeat protei 56.7 45 0.0015 31.7 9.4 107 203-336 97-208 (210)
28 1vsy_5 Proteasome activator BL 53.9 1.1E+02 0.0036 38.1 14.0 138 188-338 202-366 (997)
29 4ffb_C Protein STU2; tubulin f 51.9 20 0.00068 36.8 6.2 99 271-374 55-164 (278)
30 4db8_A Armadillo-repeat protei 51.3 13 0.00045 36.6 4.6 67 269-338 14-84 (252)
31 1wa5_B Importin alpha subunit; 51.2 26 0.00087 39.2 7.5 59 281-339 185-246 (530)
32 3ltj_A Alpharep-4; protein eng 51.1 1.4E+02 0.0046 28.2 11.8 44 284-335 122-165 (201)
33 3ltm_A Alpha-REP4; protein eng 50.6 1.3E+02 0.0043 28.7 11.6 86 273-376 114-201 (211)
34 1u6g_C TIP120 protein, CAND1; 49.9 1.1E+02 0.0038 37.9 13.6 106 202-338 48-164 (1230)
35 2jdq_A Importin alpha-1 subuni 49.8 32 0.0011 36.7 7.8 57 282-338 163-222 (450)
36 4b8j_A Importin subunit alpha- 48.4 58 0.002 36.0 9.8 67 272-338 203-274 (528)
37 3grl_A General vesicular trans 48.3 75 0.0026 37.5 10.9 81 256-339 109-197 (651)
38 1oyz_A Hypothetical protein YI 48.2 65 0.0022 32.3 9.4 98 203-335 55-155 (280)
39 3b2a_A TON_1937, putative unch 48.0 38 0.0013 35.5 7.3 107 265-373 27-139 (265)
40 1ibr_B P95, importin beta-1 su 47.4 2.3E+02 0.0077 30.0 14.0 55 283-338 342-396 (462)
41 2jdq_A Importin alpha-1 subuni 47.3 49 0.0017 35.3 8.7 68 272-339 108-181 (450)
42 1jdh_A Beta-catenin; beta-cate 45.8 81 0.0028 34.4 10.4 141 194-361 9-155 (529)
43 3now_A UNC-45 protein, SD10334 45.5 96 0.0033 37.6 11.6 152 183-337 512-694 (810)
44 2vgl_A Adaptor protein complex 45.1 4.1E+02 0.014 30.6 23.7 145 185-360 92-239 (621)
45 3ltj_A Alpharep-4; protein eng 42.0 1.3E+02 0.0044 28.4 10.0 117 202-335 14-134 (201)
46 4fdd_A Transportin-1; heat rep 41.3 5E+02 0.017 30.5 26.0 54 284-338 336-389 (852)
47 3ltm_A Alpha-REP4; protein eng 41.2 1.2E+02 0.0042 28.7 9.8 27 203-229 20-46 (211)
48 1upk_A MO25 protein; transfera 39.6 3.6E+02 0.012 29.3 13.8 86 264-354 202-295 (341)
49 4b8j_A Importin subunit alpha- 39.6 1.3E+02 0.0043 33.3 10.8 87 272-360 161-255 (528)
50 2bpt_A Importin beta-1 subunit 39.5 2.5E+02 0.0084 32.6 13.7 66 271-336 134-209 (861)
51 2z6h_A Catenin beta-1, beta-ca 37.9 37 0.0013 39.1 6.2 159 194-376 6-167 (644)
52 1qgr_A Protein (importin beta 36.5 2.4E+02 0.0082 32.8 13.0 67 271-338 408-480 (876)
53 2z6g_A B-catenin; FULL-length, 34.5 50 0.0017 39.4 6.7 140 198-362 146-289 (780)
54 3ldz_A STAM-1, signal transduc 32.7 1.3E+02 0.0043 28.3 8.0 56 303-365 84-139 (140)
55 1oyz_A Hypothetical protein YI 32.5 2.3E+02 0.0078 28.1 10.5 126 203-373 24-152 (280)
56 3tjz_B Coatomer subunit gamma; 29.3 54 0.0018 35.8 5.4 120 204-362 70-189 (355)
57 2of3_A ZYG-9; multifunctional 26.3 1.3E+02 0.0046 31.4 7.5 71 300-376 122-194 (266)
58 1x5b_A Signal transducing adap 24.1 1.9E+02 0.0066 27.8 7.7 94 269-367 33-152 (163)
59 3tpo_A Importin subunit alpha- 24.1 78 0.0027 35.5 5.6 54 286-339 226-282 (529)
60 1te4_A Conserved protein MTH18 23.5 2.3E+02 0.0078 25.1 7.7 86 204-335 44-131 (131)
61 3ul1_B Importin subunit alpha- 23.5 2.9E+02 0.01 30.6 10.3 123 189-338 125-262 (510)
62 3tpo_A Importin subunit alpha- 22.1 4E+02 0.014 29.6 11.0 57 283-339 391-451 (529)
63 3tj1_A RNA polymerase I-specif 21.4 1E+03 0.036 27.9 18.5 123 449-622 348-472 (649)
64 3ibv_A Exportin-T; karyopherin 21.4 9.1E+02 0.031 29.5 14.8 68 270-339 192-262 (980)
65 3ldz_A STAM-1, signal transduc 20.4 1.1E+02 0.0039 28.6 5.1 49 289-339 25-73 (140)
No 1
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=91.16 E-value=0.45 Score=49.18 Aligned_cols=141 Identities=10% Similarity=0.096 Sum_probs=87.8
Q ss_pred HHHhhccChhhHHHHHHHHHH-HHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcc-
Q 003294 208 LQIARDDNPSISKLGFLSLLA-VFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASE-KQPV- 284 (833)
Q Consensus 208 ~~m~~~~~~~vrkLAilSL~~-VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l~-~~~~- 284 (833)
..++.+.+-..|+-|+.+|.. +... .|. |-... ..|..+++.|.... +|++
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~-~~~--i~~~~-----------------------~~~~~~~~~L~~~l~~D~n~ 75 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQ-TKK--LKSTS-----------------------QNYSNLLGIYGHIIQKDANI 75 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGG-CCC--BCCTT-----------------------CCCHHHHHHHHHHHHHCSCH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhc-CCc--cccCc-----------------------ccHHHHHHHHHHHhccCCCH
Confidence 445566777778877777776 6543 222 22100 01334444444433 4553
Q ss_pred -hHHHHHHHHHHHhhcC--CCCc--hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccccCCCCccH-H-HHHHHHHHh
Q 003294 285 -FHQVVVRCICNLLDAV--PHFN--CCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVAT-V-EAVRLIANH 357 (833)
Q Consensus 285 -l~~~Avkclc~LL~~~--PhFN--f~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D~~~~Ge~s-l-eiVr~I~~~ 357 (833)
.+..|++|+..|.... |+|+ |...++..++.+++++...|+..+..++..++..-+. ....+ + .++..|...
T Consensus 76 ~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~ 154 (249)
T 2qk1_A 76 QAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEH 154 (249)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHH
Confidence 5788888988887755 6886 9999999999999999999999999999999875210 00000 2 355556666
Q ss_pred hhhcCCCCCHHHHHHhhc
Q 003294 358 VKVKNCQLHPDFVEVFMS 375 (833)
Q Consensus 358 vK~k~~~v~p~vl~~fL~ 375 (833)
++.++..+...++.++-.
T Consensus 155 l~~k~~~vk~~al~~l~~ 172 (249)
T 2qk1_A 155 MKHKTPQIRMECTQLFNA 172 (249)
T ss_dssp TTCSSHHHHHHHHHHHHH
T ss_pred HcCCChHHHHHHHHHHHH
Confidence 666655555444444333
No 2
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=90.30 E-value=2.5 Score=42.39 Aligned_cols=125 Identities=17% Similarity=0.209 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHhCH-HHhHHHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHH
Q 003294 180 ESKKCKLAELGMALLADP-ESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKM 258 (833)
Q Consensus 180 ~~~KdkIAaL~~~IledP-e~ni~~Lk~L~~m~~~~~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~l 258 (833)
...=.-++.|+..+...= .+.-.-+..|+..+.+++..||.-|..+|.+++...
T Consensus 75 ~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~------------------------- 129 (242)
T 2qk2_A 75 AMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST------------------------- 129 (242)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS-------------------------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-------------------------
Confidence 344555666665554321 122346777888888888889988888888886621
Q ss_pred HHHHHHHHHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHhhcC-CCC---chHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 003294 259 RFYESTLLSAYKAYLQKLIAS--EKQPVFHQVVVRCICNLLDAV-PHF---NCCEILLEVVVRNLGSQDVVVRKLCCATI 332 (833)
Q Consensus 259 r~fE~~Ll~~Y~~yLq~Le~l--~~~~~l~~~Avkclc~LL~~~-PhF---Nf~~nLL~~lV~kLg~~~~~Va~~c~~aL 332 (833)
.+..++..|... .+.+..+..++.++..++..+ |+. .+-..|+..++..|+|++..|+..+..+|
T Consensus 130 ---------~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l 200 (242)
T 2qk2_A 130 ---------SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEAL 200 (242)
T ss_dssp ---------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 012233333332 234567899999999988776 542 34568999999999999999999999999
Q ss_pred HHHhcc
Q 003294 333 KSLFTN 338 (833)
Q Consensus 333 ~~Lf~~ 338 (833)
..+...
T Consensus 201 ~~l~~~ 206 (242)
T 2qk2_A 201 GTLIKL 206 (242)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888754
No 3
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=89.21 E-value=20 Score=39.76 Aligned_cols=69 Identities=14% Similarity=0.069 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCc--chHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccc
Q 003294 271 AYLQKLIASEKQP--VFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNE 339 (833)
Q Consensus 271 ~yLq~Le~l~~~~--~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D 339 (833)
.++..+..+..++ ..+..|+.++..+....+.-.+...++..++..+.|++..|+..|+.+|..+...-
T Consensus 242 ~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 312 (588)
T 1b3u_A 242 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 312 (588)
T ss_dssp HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHh
Confidence 3455555555554 46888888888887755433456688999999999999999999999999888653
No 4
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=89.02 E-value=1.1 Score=48.38 Aligned_cols=114 Identities=12% Similarity=0.129 Sum_probs=73.4
Q ss_pred HHHHHHHHhhcc--ChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003294 203 SLKEMLQIARDD--NPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASE 280 (833)
Q Consensus 203 ~Lk~L~~m~~~~--~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l~ 280 (833)
.+..|+..+.+. +..++..|+..|..++.++.|.. +. .|=..++. .+++.|..-.
T Consensus 129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~----~~----------------~~~~~ll~---~l~~~l~~~~ 185 (462)
T 1ibr_B 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ----LQ----------------DKSNEILT---AIIQGMRKEE 185 (462)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGG----TG----------------GGHHHHHH---HHHHHHSTTC
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchh----hH----------------hHHHHHHH---HHHHHhCCCC
Confidence 567788888877 88889999999999988764321 00 00011222 2233322111
Q ss_pred CCcchHHHHHHHHHHHhhcCC----CCchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccc
Q 003294 281 KQPVFHQVVVRCICNLLDAVP----HFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNE 339 (833)
Q Consensus 281 ~~~~l~~~Avkclc~LL~~~P----hFNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D 339 (833)
.++..+..|++|++.++.-.. ...++..++..+...+.+.+..|+..+|++|..+....
T Consensus 186 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~ 248 (462)
T 1ibr_B 186 PSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 248 (462)
T ss_dssp CCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 134578889999998764211 11233456787877888899999999999999988765
No 5
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=87.69 E-value=4.2 Score=42.93 Aligned_cols=158 Identities=17% Similarity=0.196 Sum_probs=95.0
Q ss_pred HHHHHHHHHhCHHHhHHHHHHHHHHhh----ccChhhHHHHHHHHHHHHhhhc-CCCCCCCCchhhhhhhhhHHHHHHHH
Q 003294 186 LAELGMALLADPESNIKSLKEMLQIAR----DDNPSISKLGFLSLLAVFKDII-PGYRIRLPTEKELEMKVSKEVKKMRF 260 (833)
Q Consensus 186 IAaL~~~IledPe~ni~~Lk~L~~m~~----~~~~~vrkLAilSL~~VFkDIl-P~YrIR~lte~E~~~kvsKev~~lr~ 260 (833)
+..|...+-++|+.-+..++-|+..+. +.+..+...++..|..+|.=+. =+|++. +
T Consensus 67 le~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~---~---------------- 127 (266)
T 2of3_A 67 LDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS---Q---------------- 127 (266)
T ss_dssp HHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC---H----------------
T ss_pred HHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch---H----------------
Confidence 344555667788888888888887765 6677777766666666654332 244432 2
Q ss_pred HHHHHHHHHHHHHHH-HHHhcC-CcchHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcc
Q 003294 261 YESTLLSAYKAYLQK-LIASEK-QPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTN 338 (833)
Q Consensus 261 fE~~Ll~~Y~~yLq~-Le~l~~-~~~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~ 338 (833)
||-. .||=. ++++.. ...++..+-.++-.|..-.| -+.++..+++.+.+++.+++.-|+..+..++..
T Consensus 128 ~ea~------~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~----~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 128 EEVS------AFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG----PLKMTPMLLDALKSKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp HHHH------HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC----HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHH------HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 2211 12222 333321 12355444443333222122 125777788888888888888888888888888
Q ss_pred ccCCCCccHHHHH---HHHHHhhhhcCCCCCHHHHHHhhcc
Q 003294 339 EGKHGGVATVEAV---RLIANHVKVKNCQLHPDFVEVFMSL 376 (833)
Q Consensus 339 D~~~~Ge~sleiV---r~I~~~vK~k~~~v~p~vl~~fL~L 376 (833)
++. . ....+ ..|++++-.++-+|+..+++|+..+
T Consensus 198 ~G~-~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 198 AGI-S---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVAC 234 (266)
T ss_dssp HCS-G---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred cCC-C---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 752 2 22345 7788888777777888877776655
No 6
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=85.11 E-value=20 Score=35.74 Aligned_cols=143 Identities=12% Similarity=0.114 Sum_probs=95.7
Q ss_pred HHHHHHHHHh-hccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003294 202 KSLKEMLQIA-RDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASE 280 (833)
Q Consensus 202 ~~Lk~L~~m~-~~~~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l~ 280 (833)
.-+..|.... ++.+..++..|+..+..+...+- ..|+ .+...++..|....
T Consensus 56 ~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~------------------------~~~~----~~~~~ilp~ll~~l 107 (242)
T 2qk2_A 56 ALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA------------------------KRFS----NYASACVPSLLEKF 107 (242)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG------------------------GGGH----HHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh------------------------hhHH----HHHHHHHHHHHHHH
Confidence 3455566666 47888898888888888764221 1122 22334555555554
Q ss_pred CCc--chHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccccCC-CCccHH-HHHHHHHH
Q 003294 281 KQP--VFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKH-GGVATV-EAVRLIAN 356 (833)
Q Consensus 281 ~~~--~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D~~~-~Ge~sl-eiVr~I~~ 356 (833)
+++ ..+..|..++..+....+ + ..++..+...|.+++..|+..|+..|..++...+.. .+...+ .++-.+..
T Consensus 108 ~d~~~~vr~~a~~aL~~~~~~~~---~-~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~ 183 (242)
T 2qk2_A 108 KEKKPNVVTALREAIDAIYASTS---L-EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVK 183 (242)
T ss_dssp GCCCHHHHHHHHHHHHHHHTTSC---H-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHcCC---H-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH
Confidence 444 578888888888877543 3 578999999999999999999999999988764211 111111 36666777
Q ss_pred hhhhcCCCCCHHHHHHhhcc
Q 003294 357 HVKVKNCQLHPDFVEVFMSL 376 (833)
Q Consensus 357 ~vK~k~~~v~p~vl~~fL~L 376 (833)
.+...+..|+.....++-.+
T Consensus 184 ~l~D~~~~VR~~A~~~l~~l 203 (242)
T 2qk2_A 184 TLNEPDPTVRDSSAEALGTL 203 (242)
T ss_dssp HHTSSCHHHHHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHH
Confidence 77667777777777776554
No 7
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=85.10 E-value=59 Score=37.20 Aligned_cols=112 Identities=14% Similarity=0.248 Sum_probs=75.3
Q ss_pred hCHHHhHHHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003294 195 ADPESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQ 274 (833)
Q Consensus 195 edPe~ni~~Lk~L~~m~~~~~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq 274 (833)
++|+.-+-.+..|..-+.+.++.+|.+|+.+|..+- +. + +... | +.
T Consensus 79 ~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~------------~~-~----~~~~----------l-------~~ 124 (591)
T 2vgl_B 79 SQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR------------VD-K----ITEY----------L-------CE 124 (591)
T ss_dssp HSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC------------SG-G----GHHH----------H-------HH
T ss_pred cCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC------------hH-H----HHHH----------H-------HH
Confidence 356665555566666666677777777766665441 11 0 1011 1 12
Q ss_pred HHHHhc--CCcchHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccc
Q 003294 275 KLIASE--KQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEG 340 (833)
Q Consensus 275 ~Le~l~--~~~~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D~ 340 (833)
.+.++. .+|..+..|+.|+..+....|+.=-...++..+...|+|++..|...|..+|.++-..++
T Consensus 125 ~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 125 PLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence 333333 345789999999999998888743323688999999999999999999999999887654
No 8
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=84.72 E-value=7 Score=40.11 Aligned_cols=132 Identities=14% Similarity=0.174 Sum_probs=83.0
Q ss_pred HHHHHHHHh-hccChhhHHHHHHHHHHHHhhhc-CCCCCCCCchh------hhhhhhh-HHHHHHHHHHHHHHHHHHH--
Q 003294 203 SLKEMLQIA-RDDNPSISKLGFLSLLAVFKDII-PGYRIRLPTEK------ELEMKVS-KEVKKMRFYESTLLSAYKA-- 271 (833)
Q Consensus 203 ~Lk~L~~m~-~~~~~~vrkLAilSL~~VFkDIl-P~YrIR~lte~------E~~~kvs-Kev~~lr~fE~~Ll~~Y~~-- 271 (833)
.++.|.... .+.+..++..|+..+..+-..+- |++.- +.... +. .+.+ +.|. ..-...|...+..
T Consensus 61 ~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~-~y~~~llp~ll~~-l~dkk~~V~--~aa~~al~~i~~~~~ 136 (249)
T 2qk1_A 61 LLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK-DYVSLVFTPLLDR-TKEKKPSVI--EAIRKALLTICKYYD 136 (249)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH-HHHHHHHHHHHHG-GGCCCHHHH--HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH-HHHHHHHHHHHHH-HcCCCHHHH--HHHHHHHHHHHHHcc
Confidence 366666666 67788888999988888877675 55430 11110 00 0111 1221 1222233333332
Q ss_pred ----------HHHHHHH-hc-CCcchHHHHHHHHHHHhhcCCC----C-chH-HHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003294 272 ----------YLQKLIA-SE-KQPVFHQVVVRCICNLLDAVPH----F-NCC-EILLEVVVRNLGSQDVVVRKLCCATIK 333 (833)
Q Consensus 272 ----------yLq~Le~-l~-~~~~l~~~Avkclc~LL~~~Ph----F-Nf~-~nLL~~lV~kLg~~~~~Va~~c~~aL~ 333 (833)
.+..|.. +. +.+..+..++.++..++.+.+. | .+- ..|+..+++.|+|.+..|+..|++++.
T Consensus 137 ~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~ 216 (249)
T 2qk1_A 137 PLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFA 216 (249)
T ss_dssp TTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred ccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 2222222 22 3567899999999999998875 2 233 689999999999999999999999998
Q ss_pred HHhcc
Q 003294 334 SLFTN 338 (833)
Q Consensus 334 ~Lf~~ 338 (833)
.+-+.
T Consensus 217 ~i~~~ 221 (249)
T 2qk1_A 217 ILIKI 221 (249)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 9
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=84.48 E-value=7.4 Score=45.39 Aligned_cols=162 Identities=14% Similarity=0.200 Sum_probs=101.2
Q ss_pred HHHhhhhcCCHHHHHHHHHHHHHHHHHHHHh----CHHHhHHHHHHHHHHhh-----------------ccChhhHHHHH
Q 003294 165 VLAEVKEDLTAEELFESKKCKLAELGMALLA----DPESNIKSLKEMLQIAR-----------------DDNPSISKLGF 223 (833)
Q Consensus 165 ~~~~~~~~l~~~~~~~~~KdkIAaL~~~Ile----dPe~ni~~Lk~L~~m~~-----------------~~~~~vrkLAi 223 (833)
.+..++..-|.++.....+.+++.+=..+.+ ||......+..|+.+.. ..+...++++.
T Consensus 16 ~I~~ir~~~~~~~e~~~i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~~s~~~~~Krl~Y 95 (621)
T 2vgl_A 16 FISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGY 95 (621)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHhcCCCHHHHHHHH
Confidence 3444566666666666777777777777774 56666777777665543 34456677777
Q ss_pred HHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhcCCCC
Q 003294 224 LSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEKQPVFHQVVVRCICNLLDAVPHF 303 (833)
Q Consensus 224 lSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l~~~~~l~~~Avkclc~LL~~~PhF 303 (833)
+.+..++.. + .|+. .-.=..+.+.|. ..++..+..|+++||.+-. |+
T Consensus 96 L~l~~~~~~-----------~--------~e~~---------~L~iN~l~kDl~--~~n~~ir~lALr~L~~i~~--~e- 142 (621)
T 2vgl_A 96 LFISVLVNS-----------N--------SELI---------RLINNAIKNDLA--SRNPTFMGLALHCIANVGS--RE- 142 (621)
T ss_dssp HHHHHSCCC-----------C--------HHHH---------HHHHHHHHHHHH--SCCHHHHHHHHHHHHHHCC--HH-
T ss_pred HHHHHHccC-----------C--------cHHH---------HHHHHHHHHhcC--CCCHHHHHHHHHHhhccCC--HH-
Confidence 666665420 0 1111 111112222221 2345678999999999843 43
Q ss_pred chHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhccccCCCCccHHHHHHHHHHhhhhcC
Q 003294 304 NCCEILLEVVVRNL--GSQDVVVRKLCCATIKSLFTNEGKHGGVATVEAVRLIANHVKVKN 362 (833)
Q Consensus 304 Nf~~nLL~~lV~kL--g~~~~~Va~~c~~aL~~Lf~~D~~~~Ge~sleiVr~I~~~vK~k~ 362 (833)
+...|+..|...| +|+++.|+..++-++..+++.++..--. -..+..+.+++...+
T Consensus 143 -~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL~d~d 200 (621)
T 2vgl_A 143 -MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLLNDQH 200 (621)
T ss_dssp -HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHTTCSC
T ss_pred -HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHhCCCC
Confidence 6678999999999 9999999999999999999986522210 024455555554444
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=83.77 E-value=2.8 Score=49.34 Aligned_cols=117 Identities=13% Similarity=0.169 Sum_probs=75.8
Q ss_pred HHHHHHHHhhcc-ChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003294 203 SLKEMLQIARDD-NPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEK 281 (833)
Q Consensus 203 ~Lk~L~~m~~~~-~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l~~ 281 (833)
.+..|+..+... +..++..|+..+..++.++-|..+ .+.. +-..|+. .+++.|..-..
T Consensus 135 ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~--~~~~----------------~~~~ll~---~l~~~l~~~~~ 193 (861)
T 2bpt_A 135 LMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQ--ALVS----------------SSNNILI---AIVQGAQSTET 193 (861)
T ss_dssp HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSS--TTGG----------------GHHHHHH---HHHHHHSTTCC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhh--HHHH----------------HHHHHHH---HHHHhhcCCCC
Confidence 567788888777 888999999988888887655432 0100 0011111 22222221112
Q ss_pred CcchHHHHHHHHHHHhhcCC-CC---chHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccc
Q 003294 282 QPVFHQVVVRCICNLLDAVP-HF---NCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEG 340 (833)
Q Consensus 282 ~~~l~~~Avkclc~LL~~~P-hF---Nf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D~ 340 (833)
++..+..|++|++.++.-.. ++ .++..++..+...+.+.+..++..++.+|..+....+
T Consensus 194 ~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~ 256 (861)
T 2bpt_A 194 SKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYY 256 (861)
T ss_dssp CHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 34578899999998864321 11 2345688888888889999999999999998887653
No 11
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=80.86 E-value=4 Score=40.48 Aligned_cols=110 Identities=12% Similarity=0.089 Sum_probs=70.0
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 003294 203 SLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEK- 281 (833)
Q Consensus 203 ~Lk~L~~m~~~~~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l~~- 281 (833)
.+..|+.+....+..++..|+.+|..+-.+ .. .....-.+. ..+..|..+-.
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-----------~~---------~~~~~~~~~-------~~i~~L~~lL~~ 149 (252)
T 4db8_A 97 ALPALVQLLSSPNEQILQEALWALSNIASG-----------GN---------EQIQAVIDA-------GALPALVQLLSS 149 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-----------CH---------HHHHHHHHT-------THHHHHHHGGGC
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-----------Cc---------hHHHHHHHC-------CCHHHHHHHHhC
Confidence 566677777777777777777666666110 00 000111111 23455555443
Q ss_pred -CcchHHHHHHHHHHHhhcCCCCc---hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccc
Q 003294 282 -QPVFHQVVVRCICNLLDAVPHFN---CCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNE 339 (833)
Q Consensus 282 -~~~l~~~Avkclc~LL~~~PhFN---f~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D 339 (833)
++..+..|+.+++.|....++.- ....++..++..|.+++..++..|+.+|..+...+
T Consensus 150 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 211 (252)
T 4db8_A 150 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 211 (252)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC
Confidence 34578888999999886554321 11356889999999999999999999999998543
No 12
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=79.84 E-value=19 Score=36.97 Aligned_cols=145 Identities=9% Similarity=0.093 Sum_probs=87.5
Q ss_pred HHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHhc--CCc
Q 003294 207 MLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKL-IASE--KQP 283 (833)
Q Consensus 207 L~~m~~~~~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~L-e~l~--~~~ 283 (833)
+..++.+.|..+...|+..+..++.-..+.+..+..+ ......++..| +++- ..+
T Consensus 60 lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~----------------------~~~~~~~l~~lveK~l~~~k~ 117 (278)
T 4ffb_C 60 FAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHN----------------------ITLISTWTPLLVEKGLTSSRA 117 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHH----------------------HHHHHHHHHHHHHHTSSCCCH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchh----------------------HHHHHHHHHHHHHHHhcCccH
Confidence 3345567777777777776665543332222111100 11222334433 4532 344
Q ss_pred chHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccccCCCCccH--H-HHHHHHHHhhhh
Q 003294 284 VFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVAT--V-EAVRLIANHVKV 360 (833)
Q Consensus 284 ~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D~~~~Ge~s--l-eiVr~I~~~vK~ 360 (833)
..+..|+.|+..+...... . ..++..++..+++++++|+.-|+..|..++.+-+....... + .++..+...+-.
T Consensus 118 ~~~~~a~~~l~~~~~~~~~-~--~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d 194 (278)
T 4ffb_C 118 TTKTQSMSCILSLCGLDTS-I--TQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGH 194 (278)
T ss_dssp HHHHHHHHHHHHHHHTSSS-S--HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhcCc-H--HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhC
Confidence 5778889998888754321 2 36789999999999999999999999999988642111111 1 144455666667
Q ss_pred cCCCCCHHHHHHhhcc
Q 003294 361 KNCQLHPDFVEVFMSL 376 (833)
Q Consensus 361 k~~~v~p~vl~~fL~L 376 (833)
.+..|+...+.++..+
T Consensus 195 ~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 195 GDRNVRSQTMNLIVEI 210 (278)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH
Confidence 7777888777776555
No 13
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=78.97 E-value=3.6 Score=48.46 Aligned_cols=114 Identities=12% Similarity=0.152 Sum_probs=72.1
Q ss_pred HHHHHHHHhhcc--ChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003294 203 SLKEMLQIARDD--NPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASE 280 (833)
Q Consensus 203 ~Lk~L~~m~~~~--~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l~ 280 (833)
.+..|+..+... +..++..|+..+..++.++-|. . |+..+-.....+++.|..-.
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~------------------~-----~~~~~~~ll~~l~~~l~~~~ 185 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE------------------Q-----LQDKSNEILTAIIQGMRKEE 185 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHH------------------H-----HGGGHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHh------------------h-----HHhHHHHHHHHHHHhhcCCC
Confidence 456677777776 7788888888888887664221 0 11111111122222221111
Q ss_pred CCcchHHHHHHHHHHHhhcCC-CC---chHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccc
Q 003294 281 KQPVFHQVVVRCICNLLDAVP-HF---NCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNE 339 (833)
Q Consensus 281 ~~~~l~~~Avkclc~LL~~~P-hF---Nf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D 339 (833)
.++..+..|++|++.++...+ ++ .+++.++..+...+.+.+..++..|+.+|..++...
T Consensus 186 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~ 248 (876)
T 1qgr_A 186 PSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 248 (876)
T ss_dssp SCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 123568889999999876432 21 123457888888888889999999999999998765
No 14
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=78.63 E-value=4.1 Score=48.62 Aligned_cols=115 Identities=15% Similarity=0.223 Sum_probs=75.8
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003294 202 KSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEK 281 (833)
Q Consensus 202 ~~Lk~L~~m~~~~~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l~~ 281 (833)
..+..|+.++...+..++..|+..|..++.++-+...-..+. .. + ...+..|..+-.
T Consensus 128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~------~~-------------~----~~il~~l~~~l~ 184 (852)
T 4fdd_A 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLD------RP-------------L----NIMIPKFLQFFK 184 (852)
T ss_dssp THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSS------SC-------------H----HHHHHHHTTTTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhc------ch-------------H----HHHHHHHHHHhc
Confidence 467778888888888888999999999988763310000000 00 0 112222222222
Q ss_pred --CcchHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccc
Q 003294 282 --QPVFHQVVVRCICNLLDAVPH--FNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNE 339 (833)
Q Consensus 282 --~~~l~~~Avkclc~LL~~~Ph--FNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D 339 (833)
++..+..|++|++.++...+. ...-..++..++..+++.+..|+..+|.+|..+....
T Consensus 185 ~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~ 246 (852)
T 4fdd_A 185 HSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVR 246 (852)
T ss_dssp CSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC
Confidence 345788899999888765442 2233478888999999999999999999999887653
No 15
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=76.98 E-value=7.6 Score=37.93 Aligned_cols=163 Identities=10% Similarity=0.143 Sum_probs=91.3
Q ss_pred HHHHHHHHhCHHHh-----HHHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHH
Q 003294 187 AELGMALLADPESN-----IKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFY 261 (833)
Q Consensus 187 AaL~~~IledPe~n-----i~~Lk~L~~m~~~~~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~f 261 (833)
.+|+.....+|+.. -+.+..|+.++...+..++..|+..|..+-.+ .+. . ... -.
T Consensus 24 ~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~----------~~~-~----~~~-----~~ 83 (252)
T 4hxt_A 24 RDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG----------PDE-A----IKA-----IV 83 (252)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS----------CHH-H----HHH-----HH
T ss_pred HHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC----------ChH-H----HHH-----HH
Confidence 34444445555322 13577788888888888887777777666211 010 0 000 11
Q ss_pred HHHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHhhcCCCCc---hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Q 003294 262 ESTLLSAYKAYLQKLIASE--KQPVFHQVVVRCICNLLDAVPHFN---CCEILLEVVVRNLGSQDVVVRKLCCATIKSLF 336 (833)
Q Consensus 262 E~~Ll~~Y~~yLq~Le~l~--~~~~l~~~Avkclc~LL~~~PhFN---f~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf 336 (833)
+.+ .+..|..+- .++..+..|+.+++.|....|+.- .....+..++..|.+.+..++..|+.+|..+.
T Consensus 84 ~~~-------~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~ 156 (252)
T 4hxt_A 84 DAG-------GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 156 (252)
T ss_dssp HTT-------HHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HCC-------CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 222 233344433 344678888888888876544311 11246889999999999999999999999998
Q ss_pred ccccCCC-CccHHHHHHHHHHhhhhcCCCCCHHHHHHhhcc
Q 003294 337 TNEGKHG-GVATVEAVRLIANHVKVKNCQLHPDFVEVFMSL 376 (833)
Q Consensus 337 ~~D~~~~-Ge~sleiVr~I~~~vK~k~~~v~p~vl~~fL~L 376 (833)
..++... ......++..+.+++...+..+...++.++-.+
T Consensus 157 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 197 (252)
T 4hxt_A 157 SGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 197 (252)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 6432100 000112455566666544333333344444444
No 16
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=76.64 E-value=8.5 Score=42.81 Aligned_cols=132 Identities=12% Similarity=0.126 Sum_probs=81.6
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCC---C-----CCCchhhhhhhhhHHH-HHH----HHHHHHHHHHH
Q 003294 203 SLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYR---I-----RLPTEKELEMKVSKEV-KKM----RFYESTLLSAY 269 (833)
Q Consensus 203 ~Lk~L~~m~~~~~~~vrkLAilSL~~VFkDIlP~Yr---I-----R~lte~E~~~kvsKev-~~l----r~fE~~Ll~~Y 269 (833)
.+..|..++.+.+..+|..++..+..+...+=+.+- | +.+.+... .|.... ..+ ..|... ..+
T Consensus 403 ~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~--~Vr~~a~~~l~~l~~~~~~~--~~~ 478 (588)
T 1b3u_A 403 LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVY--AIREAATSNLKKLVEKFGKE--WAH 478 (588)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSH--HHHHHHHHHHHHHHHHHCHH--HHH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHHhCch--hHH
Confidence 577778888888888888877776665432211110 0 11122111 111111 111 112111 023
Q ss_pred HHHHHHHHHhcCCc--chHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcc
Q 003294 270 KAYLQKLIASEKQP--VFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTN 338 (833)
Q Consensus 270 ~~yLq~Le~l~~~~--~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~ 338 (833)
..++..|..+..++ ..+..|+.|+..|....+...|...++..+++.+.|++..|+..++.++..+...
T Consensus 479 ~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 479 ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp HHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHH
Confidence 45666666665554 4678888998888765544446678999999999999999999999999999875
No 17
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=76.14 E-value=11 Score=46.84 Aligned_cols=111 Identities=14% Similarity=0.283 Sum_probs=76.0
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 003294 203 SLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEKQ 282 (833)
Q Consensus 203 ~Lk~L~~m~~~~~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l~~~ 282 (833)
.|..|+.-+.+.|..+|.+|+..|...++. |...+ .+. ....++. ..++.|. ..+
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~--~~~~~---~~~---------------~~~~il~---~Ll~~L~--d~~ 61 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQK--DSIKL---DDD---------------SERKVVK---MILKLLE--DKN 61 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSS--SCCSC---CTT---------------HHHHHHH---HHHHHTT--CSS
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcc--cccCC---Chh---------------HHHHHHH---HHHHHhc--CCC
Confidence 466777777888999999998888776542 11111 110 0011111 1111121 344
Q ss_pred cchHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccc
Q 003294 283 PVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNE 339 (833)
Q Consensus 283 ~~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D 339 (833)
+..+..|+.|++.|....+. .+...|+..++..|++++..|+..|+.+|..+...-
T Consensus 62 ~~vR~~A~~~L~~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l 117 (1230)
T 1u6g_C 62 GEVQNLAVKCLGPLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGEL 117 (1230)
T ss_dssp HHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhC
Confidence 56789999999999987776 667889999999999999999999999999887654
No 18
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=76.11 E-value=19 Score=38.02 Aligned_cols=95 Identities=13% Similarity=0.137 Sum_probs=67.7
Q ss_pred CcchHHHHHHHHHHHhhcCCCC--chH-HHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccccCCC-CccHHHHHHHHHHh
Q 003294 282 QPVFHQVVVRCICNLLDAVPHF--NCC-EILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHG-GVATVEAVRLIANH 357 (833)
Q Consensus 282 ~~~l~~~Avkclc~LL~~~PhF--Nf~-~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D~~~~-Ge~sleiVr~I~~~ 357 (833)
++.++..|+.+++.|....|.. -|. .+.+..++..|.+.+..+...+|.+|..+...++... -.+...+|..+..+
T Consensus 138 ~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~L 217 (296)
T 1xqr_A 138 CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVAL 217 (296)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHH
Confidence 4567888999999988776541 122 3688899999999999999999999999987642110 01111266777777
Q ss_pred hhhcCCCCCHHHHHHhhcc
Q 003294 358 VKVKNCQLHPDFVEVFMSL 376 (833)
Q Consensus 358 vK~k~~~v~p~vl~~fL~L 376 (833)
+...+..|...++.++.+|
T Consensus 218 L~~~d~~v~~~al~aL~~l 236 (296)
T 1xqr_A 218 VRTEHSPFHEHVLGALCSL 236 (296)
T ss_dssp HTSCCSTHHHHHHHHHHHH
T ss_pred HcCCChhHHHHHHHHHHHH
Confidence 7777777777777777666
No 19
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=75.34 E-value=6.3 Score=38.57 Aligned_cols=147 Identities=10% Similarity=0.137 Sum_probs=83.0
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 003294 203 SLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEK- 281 (833)
Q Consensus 203 ~Lk~L~~m~~~~~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l~~- 281 (833)
.+..|+.++.+.+..++..|..+|..+.. .++ +. +..-.+. ..+..|..+..
T Consensus 87 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~----------~~~---------~~-~~~~~~~-------~~i~~L~~~l~~ 139 (252)
T 4hxt_A 87 GVEVLVKLLTSTDSEVQKEAARALANIAS----------GPD---------EA-IKAIVDA-------GGVEVLVKLLTS 139 (252)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTT----------SCH---------HH-HHHHHHT-------THHHHHHHHTTC
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHc----------CCH---------HH-HHHHHHC-------CCHHHHHHHHcC
Confidence 46666777776666666666666655521 000 00 0001111 34455555443
Q ss_pred -CcchHHHHHHHHHHHhhcCCCCc---hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccccCCCCc-cHHHHHHHHHH
Q 003294 282 -QPVFHQVVVRCICNLLDAVPHFN---CCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGV-ATVEAVRLIAN 356 (833)
Q Consensus 282 -~~~l~~~Avkclc~LL~~~PhFN---f~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D~~~~Ge-~sleiVr~I~~ 356 (833)
++..+..|+.+++.|....+..- ....++..++..|.+++..++..|+.+|..+...++..... ....++..+.+
T Consensus 140 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ 219 (252)
T 4hxt_A 140 TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQK 219 (252)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH
Confidence 34578889999999877544310 11247899999999999999999999999998643210000 00114455555
Q ss_pred hhhhcCCCCCHHHHHHhhcc
Q 003294 357 HVKVKNCQLHPDFVEVFMSL 376 (833)
Q Consensus 357 ~vK~k~~~v~p~vl~~fL~L 376 (833)
++...+..+...++.++-.|
T Consensus 220 ll~~~~~~v~~~a~~~L~~l 239 (252)
T 4hxt_A 220 LLTSTDSEVQKEAQRALENI 239 (252)
T ss_dssp GGGCSCHHHHHHHHHHHHHH
T ss_pred HHCCCcHHHHHHHHHHHHHH
Confidence 65544433444444444444
No 20
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=74.77 E-value=7.2 Score=37.46 Aligned_cols=110 Identities=13% Similarity=0.099 Sum_probs=72.8
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003294 202 KSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEK 281 (833)
Q Consensus 202 ~~Lk~L~~m~~~~~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l~~ 281 (833)
+.+..|+.+....+..++.-|+.+|..+-. ...+. +. .-++. ..+..|..+-.
T Consensus 54 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~-----------~~~~~-----~~----~i~~~-------g~i~~L~~lL~ 106 (210)
T 4db6_A 54 GALPALVQLLSSPNEQILQEALWALSNIAS-----------GGNEQ-----IQ----AVIDA-------GALPALVQLLS 106 (210)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTT-----------SCHHH-----HH----HHHHT-------TCHHHHHHHTT
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhc-----------CCcHH-----HH----HHHHC-------CCHHHHHHHHc
Confidence 357788888888888888888777776621 00000 00 01111 23344444433
Q ss_pred --CcchHHHHHHHHHHHhhcCCCCc---hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcc
Q 003294 282 --QPVFHQVVVRCICNLLDAVPHFN---CCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTN 338 (833)
Q Consensus 282 --~~~l~~~Avkclc~LL~~~PhFN---f~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~ 338 (833)
++..+..|+.+++.|....++.- ....++..++..|.+.+..++..|+.+|..+...
T Consensus 107 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 107 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 44678888999999886554321 1235789999999999999999999999999875
No 21
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=73.39 E-value=27 Score=40.43 Aligned_cols=87 Identities=11% Similarity=0.065 Sum_probs=61.7
Q ss_pred CcchHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccccCCCCccHHHHHHHHHHhhhhc
Q 003294 282 QPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVATVEAVRLIANHVKVK 361 (833)
Q Consensus 282 ~~~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D~~~~Ge~sleiVr~I~~~vK~k 361 (833)
++.++..|+.+++.|.. +-|. ..|+.-+...+.+.+..++..++.+|..+-..- .+.. -..|..+.++++..
T Consensus 363 d~~Ir~~alelL~~l~~---~~nv-~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~---~~~~-~~~v~~ll~lL~~~ 434 (618)
T 1w63_A 363 DVSIKRRAMELSFALVN---GNNI-RGMMKELLYFLDSCEPEFKADCASGIFLAAEKY---APSK-RWHIDTIMRVLTTA 434 (618)
T ss_dssp CHHHHHHHHHHHHHHCC---SSST-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSS---CCCH-HHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHcc---cccH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh---CccH-HHHHHHHHHHHHhc
Confidence 45688899999988865 3444 568888888888888889988999998887653 2333 23555566777666
Q ss_pred CCCCCHHHHHHhhcc
Q 003294 362 NCQLHPDFVEVFMSL 376 (833)
Q Consensus 362 ~~~v~p~vl~~fL~L 376 (833)
+..+..+++.++..+
T Consensus 435 ~~~v~~~~~~~l~~i 449 (618)
T 1w63_A 435 GSYVRDDAVPNLIQL 449 (618)
T ss_dssp GGGSCSSHHHHHHHH
T ss_pred cchhHHHHHHHHHHH
Confidence 656666676665554
No 22
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=71.16 E-value=21 Score=41.36 Aligned_cols=56 Identities=11% Similarity=0.108 Sum_probs=44.0
Q ss_pred CCcchHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccc
Q 003294 281 KQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEG 340 (833)
Q Consensus 281 ~~~~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D~ 340 (833)
.++..+..|+++||.+-. | +....++..|...|.++++.|+..++.++..+++.++
T Consensus 119 ~n~~vr~lAL~~L~~i~~--~--~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p 174 (618)
T 1w63_A 119 STQFVQGLALCTLGCMGS--S--EMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP 174 (618)
T ss_dssp SSSHHHHHHHHHHHHHCC--H--HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG
T ss_pred CCHhHHHHHHHHHHhcCC--H--HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh
Confidence 345678889999998863 2 3455778888889999999999999999988887653
No 23
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=70.87 E-value=1e+02 Score=32.22 Aligned_cols=155 Identities=17% Similarity=0.146 Sum_probs=104.2
Q ss_pred HHHHHHHHHHhCHHHhHHHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHH
Q 003294 185 KLAELGMALLADPESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYEST 264 (833)
Q Consensus 185 kIAaL~~~IledPe~ni~~Lk~L~~m~~~~~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~ 264 (833)
+|-.....++.+++ .|..|+.+..++|+.++--|+..+-++.++. ..++.++
T Consensus 20 kiK~a~ela~~~e~----~l~~L~~LL~dkD~~vk~raL~~LeellK~~-------------------~~~l~~~----- 71 (265)
T 3b2a_A 20 QILDAVSLALEDKR----ALFLILELAGEDDETTRLRAFVALGEILKRA-------------------DSDLRMM----- 71 (265)
T ss_dssp CHHHHHHHHHHCHH----HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-------------------CHHHHHH-----
T ss_pred hHHHHHHHHHhchh----HHHHHHHHHhccchHHHHHHHHHHHHHHHhc-------------------cccccHH-----
Confidence 45666677788887 5778888889999988887887777774431 0222233
Q ss_pred HHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccccC
Q 003294 265 LLSAYKAYLQKLIASEKQ--PVFHQVVVRCICNLLDAVPH-FNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGK 341 (833)
Q Consensus 265 Ll~~Y~~yLq~Le~l~~~--~~l~~~Avkclc~LL~~~Ph-FNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D~~ 341 (833)
.|..++..+..+.++ ....-.|++|+-.||.+.|- =|.-..++..++.-+-++++-.+..+.+.+..+ +-
T Consensus 72 ---~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv--- 144 (265)
T 3b2a_A 72 ---VLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QP--- 144 (265)
T ss_dssp ---HHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CB---
T ss_pred ---HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Cc---
Confidence 344566667666544 35778899999999998873 233356777777777777877777777777776 21
Q ss_pred CCCccHHHHHHHHHHhhhhcCCCCCHHHHHHhhcc
Q 003294 342 HGGVATVEAVRLIANHVKVKNCQLHPDFVEVFMSL 376 (833)
Q Consensus 342 ~~Ge~sleiVr~I~~~vK~k~~~v~p~vl~~fL~L 376 (833)
-..+-.++..|+.++++++-.+..-.+..|+.+
T Consensus 145 --~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~ei 177 (265)
T 3b2a_A 145 --LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNM 177 (265)
T ss_dssp --SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred --ccchHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 122345778888888777655555456666665
No 24
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=69.37 E-value=9 Score=44.07 Aligned_cols=139 Identities=12% Similarity=0.167 Sum_probs=84.1
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-
Q 003294 204 LKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEKQ- 282 (833)
Q Consensus 204 Lk~L~~m~~~~~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l~~~- 282 (833)
+..|..++.+.++.||+-|..++..+|. .-|+. + + ...++..|..+-.|
T Consensus 123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~-~~p~~-------------~----------~------~~~~~~~l~~lL~d~ 172 (591)
T 2vgl_B 123 CEPLRKCLKDEDPYVRKTAAVCVAKLHD-INAQM-------------V----------E------DQGFLDSLRDLIADS 172 (591)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHHH-SSCCC-------------H----------H------HHHHHHHHHHTTSCS
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHh-hChhh-------------c----------c------cccHHHHHHHHhCCC
Confidence 3446666677888999999999999876 22320 0 0 01456666666444
Q ss_pred -cchHHHHHHHHHHHhhcCC---CCchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccccCCCCccHHHHHHHHHHhh
Q 003294 283 -PVFHQVVVRCICNLLDAVP---HFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVATVEAVRLIANHV 358 (833)
Q Consensus 283 -~~l~~~Avkclc~LL~~~P---hFNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D~~~~Ge~sleiVr~I~~~v 358 (833)
+.....|+.+++++-...| .+......+..+++.+.+.++-+.-.++.++..+-..+ ....-.++..+...+
T Consensus 173 d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~----~~~~~~~l~~l~~~l 248 (591)
T 2vgl_B 173 NPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKD----DREAQSICERVTPRL 248 (591)
T ss_dssp CHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCS----HHHHHHHHHHHTTCS
T ss_pred ChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHHH
Confidence 4678889999999988887 45655566777777777766665555555554443221 111123444444445
Q ss_pred hhcCCCCCHHHHHHhhcc
Q 003294 359 KVKNCQLHPDFVEVFMSL 376 (833)
Q Consensus 359 K~k~~~v~p~vl~~fL~L 376 (833)
+..+..|.-+++.++..+
T Consensus 249 ~~~~~~V~~ea~~~i~~l 266 (591)
T 2vgl_B 249 SHANSAVVLSAVKVLMKF 266 (591)
T ss_dssp CSSTTHHHHHHHHHHHHS
T ss_pred cCCChHHHHHHHHHHHHH
Confidence 444444444455565554
No 25
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=62.85 E-value=45 Score=35.17 Aligned_cols=58 Identities=16% Similarity=0.186 Sum_probs=45.4
Q ss_pred CCcchHHHHHHHHHHHhhcCCCCc---hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcc
Q 003294 281 KQPVFHQVVVRCICNLLDAVPHFN---CCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTN 338 (833)
Q Consensus 281 ~~~~l~~~Avkclc~LL~~~PhFN---f~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~ 338 (833)
.++.++..|+.+++.|....|++- .....+..+|..|.+++..|...|+.+|..++..
T Consensus 179 ~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 179 QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 355678889999999988866531 1225778889999999999999999999999864
No 26
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=56.81 E-value=21 Score=39.82 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=50.4
Q ss_pred HHHHHHHhc--CCcchHHHHHHHHHHHhhcC-C--CCchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcc
Q 003294 272 YLQKLIASE--KQPVFHQVVVRCICNLLDAV-P--HFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTN 338 (833)
Q Consensus 272 yLq~Le~l~--~~~~l~~~Avkclc~LL~~~-P--hFNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~ 338 (833)
.+..|..+. .++.++..|+.+++.|.... | .+.....++..++..|.+.+..|+..+|.+|..|...
T Consensus 216 ~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 287 (530)
T 1wa5_B 216 AMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG 287 (530)
T ss_dssp CHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 344444443 33457788999999998654 3 3445567899999999999999999999999999864
No 27
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=56.67 E-value=45 Score=31.68 Aligned_cols=107 Identities=13% Similarity=0.140 Sum_probs=67.6
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 003294 203 SLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEK- 281 (833)
Q Consensus 203 ~Lk~L~~m~~~~~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l~~- 281 (833)
.+..|+.++...+..++.-|..+|..+-.+ + .+ ....+ .+. ..+..|..+..
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~----------~-~~-------~~~~~--~~~-------~~i~~L~~ll~~ 149 (210)
T 4db6_A 97 ALPALVQLLSSPNEQILQEALWALSNIASG----------G-NE-------QIQAV--IDA-------GALPALVQLLSS 149 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHTTS----------C-HH-------HHHHH--HHT-------THHHHHHHHTTC
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHHHcC----------C-HH-------HHHHH--HHc-------CcHHHHHHHHcC
Confidence 456677777777777777777666655210 0 00 00001 111 34555555433
Q ss_pred -CcchHHHHHHHHHHHhhcCCCCc---hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Q 003294 282 -QPVFHQVVVRCICNLLDAVPHFN---CCEILLEVVVRNLGSQDVVVRKLCCATIKSLF 336 (833)
Q Consensus 282 -~~~l~~~Avkclc~LL~~~PhFN---f~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf 336 (833)
++..+..|+.+++.|....++.- .....+..+++.+.+.+..|+..|+.+|..|-
T Consensus 150 ~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 150 PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 44578889999999987644321 11256788999999999999999999998774
No 28
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=53.89 E-value=1.1e+02 Score=38.10 Aligned_cols=138 Identities=15% Similarity=0.232 Sum_probs=84.5
Q ss_pred HHHHHHHhCHHHhHHHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCC---------------CCCchhhhhhhhh
Q 003294 188 ELGMALLADPESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRI---------------RLPTEKELEMKVS 252 (833)
Q Consensus 188 aL~~~IledPe~ni~~Lk~L~~m~~~~~~~vrkLAilSL~~VFkDIlP~YrI---------------R~lte~E~~~kvs 252 (833)
.++..+..|+..--+.+..|+..+....+.|.+|+. .++.+|+.++++ ++..+ -+.
T Consensus 202 ~~~~~~~~d~~~~~~~~~ali~~~~~dKpsI~~l~~----~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~-----~i~ 272 (997)
T 1vsy_5 202 KIHRKLMTDYKDIGRLIFLLIECCRVNELEIGMYAD----KILTDIVIGIKIPSSVCVISDQAFLPLAPPDG-----TIN 272 (997)
T ss_dssp HHHHHGGGCHHHHHHHHHHHHHTCSCSSSSTTTHHH----HHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCS-----STT
T ss_pred hhhhHHhcChHHHHHHHHHHHHhCcCCCHHHHHHHH----HHHHHHHhcccCchHHHHHHHHHHhccCCCcH-----HHH
Confidence 445667788888777888888877777778887766 333455544432 22211 111
Q ss_pred HHH--------HHHHHHHHHHHHHHHHHHHHHHHhcCCcc----hHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCCC
Q 003294 253 KEV--------KKMRFYESTLLSAYKAYLQKLIASEKQPV----FHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQ 320 (833)
Q Consensus 253 Kev--------~~lr~fE~~Ll~~Y~~yLq~Le~l~~~~~----l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~ 320 (833)
+.+ .+...|++.+-......+..+ ..+.. ....|++++..|+. .++--+..+++.++++.+.+.
T Consensus 273 ~~~~~~~~~~~~~r~~~~~~~~~L~~~l~~~~---~~~~h~~Wk~~~~~~~~l~~l~~-r~d~~~~~~~v~~~~~~l~~d 348 (997)
T 1vsy_5 273 LQVEAVKLAKKKKREYYLSLLVDLQDKLLDKL---DNEKDMGWKIRMFILRFVTQIQS-NLESKPDKRAVFSIISQISTK 348 (997)
T ss_dssp SHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH---HSSTTCCSCHHHHHHHHHHHHTC-CSSCCCCHHHHHHHHGGGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCCChhHHHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHhhcCC
Confidence 121 122233333322222222222 22233 45666777777665 444556679999999999999
Q ss_pred cHHHHHHHHHHHHHHhcc
Q 003294 321 DVVVRKLCCATIKSLFTN 338 (833)
Q Consensus 321 ~~~Va~~c~~aL~~Lf~~ 338 (833)
.+.++..|+.++..+|..
T Consensus 349 hp~~R~~a~~~l~~il~~ 366 (997)
T 1vsy_5 349 HPEIIHLVVKSLLSTCNK 366 (997)
T ss_dssp CHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999888876
No 29
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=51.86 E-value=20 Score=36.78 Aligned_cols=99 Identities=13% Similarity=0.068 Sum_probs=60.8
Q ss_pred HHHHHHHHhcCCcc--hHHHHHHHHHHHhhcCC-CCc-------hHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHHhccc
Q 003294 271 AYLQKLIASEKQPV--FHQVVVRCICNLLDAVP-HFN-------CCEILLEVVVRN-LGSQDVVVRKLCCATIKSLFTNE 339 (833)
Q Consensus 271 ~yLq~Le~l~~~~~--l~~~Avkclc~LL~~~P-hFN-------f~~nLL~~lV~k-Lg~~~~~Va~~c~~aL~~Lf~~D 339 (833)
.++..+.+...|++ ....|+.|++.++.... .+. +...++..+|.+ +|+....++..+..++..++...
T Consensus 55 ~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~ 134 (278)
T 4ffb_C 55 RDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD 134 (278)
T ss_dssp SCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc
Confidence 33444444556664 45778999999887542 221 123456667767 79999999988999998887654
Q ss_pred cCCCCccHHHHHHHHHHhhhhcCCCCCHHHHHHhh
Q 003294 340 GKHGGVATVEAVRLIANHVKVKNCQLHPDFVEVFM 374 (833)
Q Consensus 340 ~~~~Ge~sleiVr~I~~~vK~k~~~v~p~vl~~fL 374 (833)
..+. .++..|...++.++..+....+.++-
T Consensus 135 --~~~~---~~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 135 --TSIT---QSVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp --SSSH---HHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred --CcHH---HHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 2232 35566666666665444444444433
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=51.33 E-value=13 Score=36.63 Aligned_cols=67 Identities=12% Similarity=0.040 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhhcCCCCc----hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcc
Q 003294 269 YKAYLQKLIASEKQPVFHQVVVRCICNLLDAVPHFN----CCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTN 338 (833)
Q Consensus 269 Y~~yLq~Le~l~~~~~l~~~Avkclc~LL~~~PhFN----f~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~ 338 (833)
|..|+..|. +.++..+..|+.+++.++...++ + .....+..+|..|.+.+..++..++.+|..+-..
T Consensus 14 ~~~~~~~L~--s~~~~~~~~a~~~L~~~l~~~~~-~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 84 (252)
T 4db8_A 14 LPQMTQQLN--SDDMQEQLSATRKFSQILSDGNE-QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 84 (252)
T ss_dssp HHHHHHHHH--SSCSSHHHHHHHHHHHHHHHHHH-HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCCc-hHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 344455443 34567888999999888876221 1 1124668899999999999999999999999864
No 31
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=51.16 E-value=26 Score=39.15 Aligned_cols=59 Identities=8% Similarity=0.081 Sum_probs=46.2
Q ss_pred CCcchHHHHHHHHHHHhhcCCCCc---hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccc
Q 003294 281 KQPVFHQVVVRCICNLLDAVPHFN---CCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNE 339 (833)
Q Consensus 281 ~~~~l~~~Avkclc~LL~~~PhFN---f~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D 339 (833)
.++.++..|+.+++.|....|++- ....++..++..|.+.+..++..|+.+|..|...+
T Consensus 185 ~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 185 GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 456788999999999986654311 12257888999999989999999999999999765
No 32
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=51.10 E-value=1.4e+02 Score=28.21 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=29.4
Q ss_pred chHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 003294 284 VFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSL 335 (833)
Q Consensus 284 ~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~L 335 (833)
..+..|+.++..+=. ...+..++..+.+++..|+..++.+|..+
T Consensus 122 ~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 122 FVRIAAAFALGEIGD--------ERAVEPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp HHHHHHHHHHHHHTC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 456666666666521 24566677777777777777777777766
No 33
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=50.57 E-value=1.3e+02 Score=28.66 Aligned_cols=86 Identities=13% Similarity=0.097 Sum_probs=50.3
Q ss_pred HHHHHHhcCCc--chHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccccCCCCccHHHH
Q 003294 273 LQKLIASEKQP--VFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVATVEA 350 (833)
Q Consensus 273 Lq~Le~l~~~~--~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D~~~~Ge~slei 350 (833)
+..|..+..++ ..+..|+.++..+-. ...+..++..+.|++..|+..++.+|..+=. -++
T Consensus 114 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~ 175 (211)
T 3ltm_A 114 VEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERV 175 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhH
Confidence 34444443333 466777777776621 2466777788888888888888888877621 134
Q ss_pred HHHHHHhhhhcCCCCCHHHHHHhhcc
Q 003294 351 VRLIANHVKVKNCQLHPDFVEVFMSL 376 (833)
Q Consensus 351 Vr~I~~~vK~k~~~v~p~vl~~fL~L 376 (833)
+..+.+++...+..|...++..|-.+
T Consensus 176 ~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 176 RAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 55555555555444444445554443
No 34
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=49.93 E-value=1.1e+02 Score=37.94 Aligned_cols=106 Identities=14% Similarity=0.278 Sum_probs=72.0
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 003294 202 KSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIAS-- 279 (833)
Q Consensus 202 ~~Lk~L~~m~~~~~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l-- 279 (833)
..+..|+..+.+.+..+|..|+.+|..+..-+ | + . +....++.|...
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~-~--------~---------~-------------~~~~i~~~Ll~~l~ 96 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKV-K--------E---------Y-------------QVETIVDTLCTNML 96 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTS-C--------H---------H-------------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC-C--------H---------H-------------HHHHHHHHHHHHhc
Confidence 45666777777888899999999887775321 1 0 0 112333444333
Q ss_pred cCCcchHHHHHHHHHHHhhcCCCC--------chHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhcc
Q 003294 280 EKQPVFHQVVVRCICNLLDAVPHF--------NCCEILLEVVVRNLG-SQDVVVRKLCCATIKSLFTN 338 (833)
Q Consensus 280 ~~~~~l~~~Avkclc~LL~~~PhF--------Nf~~nLL~~lV~kLg-~~~~~Va~~c~~aL~~Lf~~ 338 (833)
..++..+..|..++..+....+.. ++...|+..++..+. +.+..++..++.++.++...
T Consensus 97 d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 97 SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 223456788888888888777654 267889999999998 47888888888888888754
No 35
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=49.83 E-value=32 Score=36.69 Aligned_cols=57 Identities=21% Similarity=0.181 Sum_probs=46.8
Q ss_pred CcchHHHHHHHHHHHhhcC-C--CCchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcc
Q 003294 282 QPVFHQVVVRCICNLLDAV-P--HFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTN 338 (833)
Q Consensus 282 ~~~l~~~Avkclc~LL~~~-P--hFNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~ 338 (833)
++.++..|+.+++.|.... | .+.+-..++..++..+.+.+..++..++.+|..+...
T Consensus 163 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 222 (450)
T 2jdq_A 163 RLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDG 222 (450)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence 3467899999999998654 3 3444468899999999999999999999999999864
No 36
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=48.45 E-value=58 Score=36.05 Aligned_cols=67 Identities=19% Similarity=0.194 Sum_probs=50.4
Q ss_pred HHHHHHHhc-C--CcchHHHHHHHHHHHhhcCC--CCchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcc
Q 003294 272 YLQKLIASE-K--QPVFHQVVVRCICNLLDAVP--HFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTN 338 (833)
Q Consensus 272 yLq~Le~l~-~--~~~l~~~Avkclc~LL~~~P--hFNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~ 338 (833)
.+..|..+. . ++.....|+.+++.|....| .+.....++..++..|.+.+..|...||.+|..+...
T Consensus 203 ~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 274 (528)
T 4b8j_A 203 ALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG 274 (528)
T ss_dssp CHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC
Confidence 344444443 2 34577888999999987654 3444457899999999999999999999999998754
No 37
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=48.31 E-value=75 Score=37.53 Aligned_cols=81 Identities=14% Similarity=0.114 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHhhcCCCCchHHHH------HHHHHHHhCCCcHHHHHH
Q 003294 256 KKMRFYESTLLSAYKAYLQKLIASEKQP--VFHQVVVRCICNLLDAVPHFNCCEIL------LEVVVRNLGSQDVVVRKL 327 (833)
Q Consensus 256 ~~lr~fE~~Ll~~Y~~yLq~Le~l~~~~--~l~~~Avkclc~LL~~~PhFNf~~nL------L~~lV~kLg~~~~~Va~~ 327 (833)
..+|.=|.-+.+ ...+..|..+-... ..+--|++|+..|+.+.|+-+. +-| +..+|..|.|+.+.|+..
T Consensus 109 ~~~~~~d~f~~~--~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q-~~Il~~p~gi~~Lv~lL~d~rE~iRne 185 (651)
T 3grl_A 109 LGSQFTEIFIKQ--QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQ-QIILVSPMGVSRLMDLLADSREVIRND 185 (651)
T ss_dssp HHHHHHHHHHHS--THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHH-HHHHHSTTHHHHHHGGGGCSSHHHHHH
T ss_pred HHHHHHHHHHcC--CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHH-HHHHhCcccHHHHHHHHhCchHHHHHH
Confidence 346666554333 46666666654433 4577899999999999998443 234 456889999999999988
Q ss_pred HHHHHHHHhccc
Q 003294 328 CCATIKSLFTNE 339 (833)
Q Consensus 328 c~~aL~~Lf~~D 339 (833)
++-.|..|-+.+
T Consensus 186 allLL~~Lt~~n 197 (651)
T 3grl_A 186 GVLLLQALTRSN 197 (651)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHhcCC
Confidence 887777776654
No 38
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=48.23 E-value=65 Score=32.31 Aligned_cols=98 Identities=11% Similarity=0.113 Sum_probs=64.6
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---h
Q 003294 203 SLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIA---S 279 (833)
Q Consensus 203 ~Lk~L~~m~~~~~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~---l 279 (833)
.+..|+.++.+.+..+|..|+.+|..+..+ .+. + ...+..|.. -
T Consensus 55 ~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~----------~~~-----~------------------~~l~~~L~~~~~~ 101 (280)
T 1oyz_A 55 AVRLAIEFCSDKNYIRRDIGAFILGQIKIC----------KKC-----E------------------DNVFNILNNMALN 101 (280)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHSCCC----------TTT-----H------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhccc----------ccc-----c------------------hHHHHHHHHHHhc
Confidence 467778888888889999888887654210 000 0 012222221 1
Q ss_pred cCCcchHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 003294 280 EKQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSL 335 (833)
Q Consensus 280 ~~~~~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~L 335 (833)
..++..+..|+.++..+-...|.+ ...++..++..|.+++..|+..++.+|..+
T Consensus 102 d~~~~vr~~a~~aL~~l~~~~~~~--~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 102 DKSACVRATAIESTAQRCKKNPIY--SPKIVEQSQITAFDKSTNVRRATAFAISVI 155 (280)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCGGG--HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHhccCCcc--cHHHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence 234557788888888876555543 447888889999999999988888888754
No 39
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=47.98 E-value=38 Score=35.50 Aligned_cols=107 Identities=13% Similarity=0.119 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHhhcCCCCc---hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccc
Q 003294 265 LLSAYKAYLQKLIASE--KQPVFHQVVVRCICNLLDAVPHFN---CCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNE 339 (833)
Q Consensus 265 Ll~~Y~~yLq~Le~l~--~~~~l~~~Avkclc~LL~~~PhFN---f~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D 339 (833)
+.+.|..++..|..+- +|+.++.-|+..+=++|...|--- --++++-.+|+-+-+.|++|+-.+..||+.|+.+-
T Consensus 27 la~~~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~v 106 (265)
T 3b2a_A 27 LALEDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDV 106 (265)
T ss_dssp HHHHCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTC
T ss_pred HHHhchhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC
Confidence 6778888999999885 456788888889999998864321 12478888999999999999999999999999987
Q ss_pred cCCCCccHH-HHHHHHHHhhhhcCCCCCHHHHHHh
Q 003294 340 GKHGGVATV-EAVRLIANHVKVKNCQLHPDFVEVF 373 (833)
Q Consensus 340 ~~~~Ge~sl-eiVr~I~~~vK~k~~~v~p~vl~~f 373 (833)
+- +.-++ .++..+..++++++--+...+.+.+
T Consensus 107 pL--~~~~y~Kl~~aL~dlik~~~~il~~eaae~L 139 (265)
T 3b2a_A 107 PM--GSKTFLKAAKTLVSLLESPDDMMRIETIDVL 139 (265)
T ss_dssp CB--CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred CC--CHHHHHHHHHHHHHHhcCCCchHHHHHHHHh
Confidence 52 23333 3667777777765543333333333
No 40
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=47.44 E-value=2.3e+02 Score=29.96 Aligned_cols=55 Identities=9% Similarity=0.096 Sum_probs=46.0
Q ss_pred cchHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcc
Q 003294 283 PVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTN 338 (833)
Q Consensus 283 ~~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~ 338 (833)
...+..|..|+..|....+. ..-..++..+...+++++..++..++.+|..+...
T Consensus 342 ~~~r~~a~~~L~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~ 396 (462)
T 1ibr_B 342 WNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG 396 (462)
T ss_dssp CSHHHHHHHHHHHHHHHTTT-THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred chHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 36788999999999888774 44467888888899999999999999999999863
No 41
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=47.29 E-value=49 Score=35.27 Aligned_cols=68 Identities=7% Similarity=0.039 Sum_probs=49.0
Q ss_pred HHHHHHHhcC--CcchHHHHHHHHHHHhhcCCCCc---hHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhccc
Q 003294 272 YLQKLIASEK--QPVFHQVVVRCICNLLDAVPHFN---CCEILLEVVVRNLGS-QDVVVRKLCCATIKSLFTNE 339 (833)
Q Consensus 272 yLq~Le~l~~--~~~l~~~Avkclc~LL~~~PhFN---f~~nLL~~lV~kLg~-~~~~Va~~c~~aL~~Lf~~D 339 (833)
.+..|..+-. ++.++..|+.+++.|....|++- ....++..++..|.+ .+..++..|+.+|..+...+
T Consensus 108 ~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 108 AVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 3444444433 45688999999999987654311 112568889999985 78999999999999999764
No 42
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=45.79 E-value=81 Score=34.41 Aligned_cols=141 Identities=11% Similarity=0.098 Sum_probs=79.5
Q ss_pred HhCHHHhHHHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 003294 194 LADPESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYL 273 (833)
Q Consensus 194 ledPe~ni~~Lk~L~~m~~~~~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yL 273 (833)
+++|+...+.+..|+.++...+..++..|..+|..+-.+ +.. ... +.. +.+ .....+
T Consensus 9 ~~~~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~-----------~~~-----~~~---~~~-~~~---~i~~Lv 65 (529)
T 1jdh_A 9 QDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-----------EAS-----RHA---IMR-SPQ---MVSAIV 65 (529)
T ss_dssp --------CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-----------HHH-----HHH---HHT-CHH---HHHHHH
T ss_pred CchhhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcC-----------Ccc-----HHH---HHh-Ccc---hHHHHH
Confidence 466777778899999999988999999998888777321 000 000 000 001 112223
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHhhcCCCCchHH-----HHHHHHHHHhCCCcHHHHHHHHHHHHHHhccccCCCCcc-H
Q 003294 274 QKLIASEKQPVFHQVVVRCICNLLDAVPHFNCCE-----ILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVA-T 347 (833)
Q Consensus 274 q~Le~l~~~~~l~~~Avkclc~LL~~~PhFNf~~-----nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D~~~~Ge~-s 347 (833)
+.|.. ..++..+..|+.+++.|-.. ++ .+. ..+..++..|.+++..+...++.+|..+...++.....+ .
T Consensus 66 ~~L~~-~~~~~~~~~a~~~L~~ls~~-~~--~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 141 (529)
T 1jdh_A 66 RTMQN-TNDVETARCTAGTLHNLSHH-RE--GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL 141 (529)
T ss_dssp HHHHH-CCCHHHHHHHHHHHHHHTTS-HH--HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHhc-CCCHHHHHHHHHHHHHHHcC-ch--hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 33221 22455677888888886432 22 222 356789999999999999999999999987653111000 1
Q ss_pred HHHHHHHHHhhhhc
Q 003294 348 VEAVRLIANHVKVK 361 (833)
Q Consensus 348 leiVr~I~~~vK~k 361 (833)
..+|..+.++++..
T Consensus 142 ~g~i~~L~~ll~~~ 155 (529)
T 1jdh_A 142 AGGLQKMVALLNKT 155 (529)
T ss_dssp HTHHHHHHHGGGCC
T ss_pred cCCHHHHHHHHhcC
Confidence 22455566666543
No 43
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=45.54 E-value=96 Score=37.58 Aligned_cols=152 Identities=14% Similarity=0.150 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhCHHHhH-----HHHHHHHHHhhccChhhHHHHHHHHHHHHhh-----hcCCCC----CCC----Cch
Q 003294 183 KCKLAELGMALLADPESNI-----KSLKEMLQIARDDNPSISKLGFLSLLAVFKD-----IIPGYR----IRL----PTE 244 (833)
Q Consensus 183 KdkIAaL~~~IledPe~ni-----~~Lk~L~~m~~~~~~~vrkLAilSL~~VFkD-----IlP~Yr----IR~----lte 244 (833)
+.+.+..-..|-.+++..- +.+..|+.+..+.+...++.|..+|..+-.+ +++++. |++ ++.
T Consensus 512 qe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~ 591 (810)
T 3now_A 512 QELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQ 591 (810)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCC
Confidence 3344444444445665331 2467788888877777777777777665432 233322 111 110
Q ss_pred hhhhhhhhHH-HHHHHHH----HH---HHHHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHhhcCCCCch---HHHHHH
Q 003294 245 KELEMKVSKE-VKKMRFY----ES---TLLSAYKAYLQKLIAS--EKQPVFHQVVVRCICNLLDAVPHFNC---CEILLE 311 (833)
Q Consensus 245 ~E~~~kvsKe-v~~lr~f----E~---~Ll~~Y~~yLq~Le~l--~~~~~l~~~Avkclc~LL~~~PhFNf---~~nLL~ 311 (833)
. ...-...+ ...+.+. |. .+.. ...+..|+.+ ..++..+..|+.|+|.|..+.+.+.. ....+.
T Consensus 592 ~-~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~--aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~ 668 (810)
T 3now_A 592 D-CTALENFESLMALTNLASMNESVRQRIIK--EQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVK 668 (810)
T ss_dssp T-SCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHH
T ss_pred C-CcHHHHHHHHHHHHHHhcCCHHHHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHH
Confidence 0 00000000 1111111 11 1111 1345566654 34457889999999999865332211 125788
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHhc
Q 003294 312 VVVRNLGSQDVVVRKLCCATIKSLFT 337 (833)
Q Consensus 312 ~lV~kLg~~~~~Va~~c~~aL~~Lf~ 337 (833)
.+|..+++.+..++..+|.+|..|-.
T Consensus 669 ~Lv~LL~s~d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 669 FLALLCEDEDEETATACAGALAIITS 694 (810)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999876
No 44
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=45.10 E-value=4.1e+02 Score=30.60 Aligned_cols=145 Identities=17% Similarity=0.173 Sum_probs=88.1
Q ss_pred HHHHHHHHHH--hCHHHhHHHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHH
Q 003294 185 KLAELGMALL--ADPESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYE 262 (833)
Q Consensus 185 kIAaL~~~Il--edPe~ni~~Lk~L~~m~~~~~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE 262 (833)
|++-|+..+. ++|+.-+-.+..+..=+.+.++.+|.+|+.+|..+- + .+
T Consensus 92 rl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~-~--------------------~e-------- 142 (621)
T 2vgl_A 92 QIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVG-S--------------------RE-------- 142 (621)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC-C--------------------HH--------
T ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC-C--------------------HH--------
Confidence 3455555443 556665666666666667778888888888877761 0 11
Q ss_pred HHHHHHHHHHHHHHH-HhcCCcchHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccccC
Q 003294 263 STLLSAYKAYLQKLI-ASEKQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGK 341 (833)
Q Consensus 263 ~~Ll~~Y~~yLq~Le-~l~~~~~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D~~ 341 (833)
+.......|..+. .-..+|..+..|+-|+..+....|+.=-...++..+...|+|++..|..-|+.++.++...++.
T Consensus 143 --~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~ 220 (621)
T 2vgl_A 143 --MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE 220 (621)
T ss_dssp --HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH
T ss_pred --HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH
Confidence 1111111222221 1234567889999999999887765321125778888889999999999999999998876631
Q ss_pred CCCccHHHHHHHHHHhhhh
Q 003294 342 HGGVATVEAVRLIANHVKV 360 (833)
Q Consensus 342 ~~Ge~sleiVr~I~~~vK~ 360 (833)
.-....-.+++.+.+++-.
T Consensus 221 ~~~~~~~~~~~~L~~ll~~ 239 (621)
T 2vgl_A 221 EFKTSVSLAVSRLSRIVTS 239 (621)
T ss_dssp HHTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 0000111255666666533
No 45
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=41.96 E-value=1.3e+02 Score=28.39 Aligned_cols=117 Identities=14% Similarity=0.168 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHHHHHh-hhcCCCCCCCCchhhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 003294 202 KSLKEMLQIARDDNPSISKLGFLSLLAVFK-DIIPGYRIRLPTEKELEMKVSKE-VKKMRFYESTLLSAYKAYLQKLIAS 279 (833)
Q Consensus 202 ~~Lk~L~~m~~~~~~~vrkLAilSL~~VFk-DIlP~YrIR~lte~E~~~kvsKe-v~~lr~fE~~Ll~~Y~~yLq~Le~l 279 (833)
.....++.+..+.+..+|..|+..|..+-. +.+|.- ++.+.+.. ..+... +..+..+ .....+..|..+
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L-~~~l~~~~--~~vr~~a~~~L~~~------~~~~~~~~L~~~ 84 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPL-IKALKDED--AWVRRAAADALGQI------GDERAVEPLIKA 84 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHH-HHHTTCSS--HHHHHHHHHHHHHH------CCGGGHHHHHHH
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHH-HHHHcCCC--HHHHHHHHHHHHhh------CCHHHHHHHHHH
Confidence 456677777777888888777777766522 111110 00011110 011111 0111111 011234444444
Q ss_pred cCC--cchHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 003294 280 EKQ--PVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSL 335 (833)
Q Consensus 280 ~~~--~~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~L 335 (833)
-.+ +..+..|+.++..+-. ...+..++..|.+++..|+..++.+|..+
T Consensus 85 l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 134 (201)
T 3ltj_A 85 LKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEI 134 (201)
T ss_dssp TTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 333 4577888888877621 24677888889999999999999998876
No 46
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=41.32 E-value=5e+02 Score=30.51 Aligned_cols=54 Identities=9% Similarity=0.037 Sum_probs=42.8
Q ss_pred chHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcc
Q 003294 284 VFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTN 338 (833)
Q Consensus 284 ~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~ 338 (833)
..+..|..|+-.|....|.. .-..++..++..+.+++..++..++.+|..+...
T Consensus 336 ~vr~~a~~~L~~la~~~~~~-~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~ 389 (852)
T 4fdd_A 336 NLRKCSAAALDVLANVYRDE-LLPHILPLLKELLFHHEWVVKESGILVLGAIAEG 389 (852)
T ss_dssp CHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 46778888888877766643 3356888888899999999999999999998753
No 47
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=41.15 E-value=1.2e+02 Score=28.74 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=21.0
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHH
Q 003294 203 SLKEMLQIARDDNPSISKLGFLSLLAV 229 (833)
Q Consensus 203 ~Lk~L~~m~~~~~~~vrkLAilSL~~V 229 (833)
.+..|+.++.+.+..+|..|+..|..+
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~ 46 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKI 46 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 366677777788889998888888765
No 48
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=39.64 E-value=3.6e+02 Score=29.28 Aligned_cols=86 Identities=10% Similarity=0.121 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHhhcCCCCchHH------HHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 003294 264 TLLSAYKAYLQKLIASEKQPV--FHQVVVRCICNLLDAVPHFNCCE------ILLEVVVRNLGSQDVVVRKLCCATIKSL 335 (833)
Q Consensus 264 ~Ll~~Y~~yLq~Le~l~~~~~--l~~~Avkclc~LL~~~PhFNf~~------nLL~~lV~kLg~~~~~Va~~c~~aL~~L 335 (833)
.|...|..|.....++...++ .+.++++.+.+||...+.|++.. +-|.++.+.|.|+++.|..-+-+.+ .+
T Consensus 202 fL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVF-Kv 280 (341)
T 1upk_A 202 FLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVF-KV 280 (341)
T ss_dssp HHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHH-HH
T ss_pred HHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhhe-ee
Confidence 455678888888887766554 58999999999999999887643 3467889999999998865554444 56
Q ss_pred hccccCCCCccHHHHHHHH
Q 003294 336 FTNEGKHGGVATVEAVRLI 354 (833)
Q Consensus 336 f~~D~~~~Ge~sleiVr~I 354 (833)
|-..|+ .+-.|+..+
T Consensus 281 FVANP~----K~~~I~~IL 295 (341)
T 1upk_A 281 FVANPN----KTQPILDIL 295 (341)
T ss_dssp HHHCSS----CCHHHHHHH
T ss_pred eeeCCC----CChHHHHHH
Confidence 655442 334455444
No 49
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=39.57 E-value=1.3e+02 Score=33.30 Aligned_cols=87 Identities=11% Similarity=0.104 Sum_probs=55.5
Q ss_pred HHHHHHHhcC--CcchHHHHHHHHHHHhhcCCCCchHH-----HHHHHHHHHh-CCCcHHHHHHHHHHHHHHhccccCCC
Q 003294 272 YLQKLIASEK--QPVFHQVVVRCICNLLDAVPHFNCCE-----ILLEVVVRNL-GSQDVVVRKLCCATIKSLFTNEGKHG 343 (833)
Q Consensus 272 yLq~Le~l~~--~~~l~~~Avkclc~LL~~~PhFNf~~-----nLL~~lV~kL-g~~~~~Va~~c~~aL~~Lf~~D~~~~ 343 (833)
.+..|..+-. ++.++..|+.+++.|....|+ ++. ..+..++..| .+.+..+...|+.+|..|....+...
T Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~--~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~ 238 (528)
T 4b8j_A 161 AVPIFVKLLGSSSDDVREQAVWALGNVAGDSPK--CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPS 238 (528)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHH--HHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCC
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChh--hHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCc
Confidence 3444444433 446788999999998765553 222 3567888888 67788999999999999998753222
Q ss_pred CccHHHHHHHHHHhhhh
Q 003294 344 GVATVEAVRLIANHVKV 360 (833)
Q Consensus 344 Ge~sleiVr~I~~~vK~ 360 (833)
-...-.++..+.+++..
T Consensus 239 ~~~~~~~l~~L~~lL~~ 255 (528)
T 4b8j_A 239 FEQTRPALPALARLIHS 255 (528)
T ss_dssp HHHHTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHCC
Confidence 11111245555555543
No 50
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=39.46 E-value=2.5e+02 Score=32.64 Aligned_cols=66 Identities=8% Similarity=0.136 Sum_probs=48.7
Q ss_pred HHHHHHHHhcC---CcchHHHHHHHHHHHhhcCCC-----CchHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHh
Q 003294 271 AYLQKLIASEK---QPVFHQVVVRCICNLLDAVPH-----FNCCEILLEVVVRNLGSQ--DVVVRKLCCATIKSLF 336 (833)
Q Consensus 271 ~yLq~Le~l~~---~~~l~~~Avkclc~LL~~~Ph-----FNf~~nLL~~lV~kLg~~--~~~Va~~c~~aL~~Lf 336 (833)
.++..|..... ++..+..|+.++..+....+. ..+...|+..++..+.+. +..|+..++.++..++
T Consensus 134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~ 209 (861)
T 2bpt_A 134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSL 209 (861)
T ss_dssp HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence 34444544432 456788899999998876543 246778999999999997 7889988888888764
No 51
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=37.94 E-value=37 Score=39.14 Aligned_cols=159 Identities=10% Similarity=0.086 Sum_probs=0.0
Q ss_pred HhCHHHhHHHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 003294 194 LADPESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYL 273 (833)
Q Consensus 194 ledPe~ni~~Lk~L~~m~~~~~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yL 273 (833)
+.+++...+.+..|+.++...+..++..|..+|..+ .........+...+..+ ..|
T Consensus 6 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~L-------------------a~~~~~~~~i~~~~~~i-----~~L 61 (644)
T 2z6h_A 6 QDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQL-------------------SKKEASRHAIMRSPQMV-----SAI 61 (644)
T ss_dssp ------CTTTHHHHHHHHTCSCHHHHHHHHHHHHHH-------------------HTSTTHHHHHTTCHHHH-----HHH
T ss_pred cchhhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHH-------------------HCCChhHHHHHhccChH-----HHH
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHhhcCCCCchHHH--HHHHHHHHhCCCcHHHHHHHHHHHHHHhccccCCCCccH-HHH
Q 003294 274 QKLIASEKQPVFHQVVVRCICNLLDAVPHFNCCEI--LLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVAT-VEA 350 (833)
Q Consensus 274 q~Le~l~~~~~l~~~Avkclc~LL~~~PhFNf~~n--LL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D~~~~Ge~s-lei 350 (833)
-.+.....++..+..|+.+++.|-........-.. .+..+|..|.+++..+...|+.+|..+...+......+. ..+
T Consensus 62 v~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~ 141 (644)
T 2z6h_A 62 VRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGG 141 (644)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCC
Q ss_pred HHHHHHhhhhcCCCCCHHHHHHhhcc
Q 003294 351 VRLIANHVKVKNCQLHPDFVEVFMSL 376 (833)
Q Consensus 351 Vr~I~~~vK~k~~~v~p~vl~~fL~L 376 (833)
|..+.++++..+..+...+..+|-.|
T Consensus 142 i~~Lv~lL~~~~~~~~~~a~~~L~~L 167 (644)
T 2z6h_A 142 LQKMVALLNKTNVKFLAITTDCLQIL 167 (644)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHCcCCHHHHHHHHHHHHHH
No 52
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=36.45 E-value=2.4e+02 Score=32.82 Aligned_cols=67 Identities=19% Similarity=0.268 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCCc--chHHHHHHHHHHHhhcCCC----CchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcc
Q 003294 271 AYLQKLIASEKQP--VFHQVVVRCICNLLDAVPH----FNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTN 338 (833)
Q Consensus 271 ~yLq~Le~l~~~~--~l~~~Avkclc~LL~~~Ph----FNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~ 338 (833)
..+..|...-.++ ..+..|+.++..+....+. -.|-..++..+++.|.+. ..|+..|+.+|..+...
T Consensus 408 ~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 3444444444444 4678888888887776542 356679999999999985 88899999999988865
No 53
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=34.47 E-value=50 Score=39.40 Aligned_cols=140 Identities=11% Similarity=0.060 Sum_probs=80.6
Q ss_pred HHhHHHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003294 198 ESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLI 277 (833)
Q Consensus 198 e~ni~~Lk~L~~m~~~~~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le 277 (833)
+-..+.+..|+.+....+..++..|+.+|..+-.+- ... . .+.... ..+ ...++.|.
T Consensus 146 ~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~-----------~~~------~--~i~~~~-~~i---~~Lv~~L~ 202 (780)
T 2z6g_A 146 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-----------ASR------H--AIMRSP-QMV---SAIVRTMQ 202 (780)
T ss_dssp HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSH-----------HHH------H--HHTTCH-HHH---HHHHHHHH
T ss_pred HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCC-----------hhH------H--HHHhcc-ChH---HHHHHHHc
Confidence 333567777888877888889988888888774321 000 0 000000 111 11222222
Q ss_pred HhcCCcchHHHHHHHHHHHhhcCCCC---chHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccccCCCCcc-HHHHHHH
Q 003294 278 ASEKQPVFHQVVVRCICNLLDAVPHF---NCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVA-TVEAVRL 353 (833)
Q Consensus 278 ~l~~~~~l~~~Avkclc~LL~~~PhF---Nf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D~~~~Ge~-sleiVr~ 353 (833)
. ..++..+..|+.+++.|-. .++. -.....+..+|..|.+.+..+...|+.+|..|-..+......+ ...+|..
T Consensus 203 ~-~~d~~vr~~Aa~aL~~Ls~-~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~ 280 (780)
T 2z6g_A 203 N-TNDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQK 280 (780)
T ss_dssp H-CCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHH
T ss_pred C-CCCHHHHHHHHHHHHHHhC-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHH
Confidence 1 1255678888888888533 2221 0122577889999999999999999999999987642111000 1124556
Q ss_pred HHHhhhhcC
Q 003294 354 IANHVKVKN 362 (833)
Q Consensus 354 I~~~vK~k~ 362 (833)
+.++++..+
T Consensus 281 Lv~lL~~~~ 289 (780)
T 2z6g_A 281 MVALLNKTN 289 (780)
T ss_dssp HHHGGGCCC
T ss_pred HHHHHhcCC
Confidence 666665543
No 54
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=32.71 E-value=1.3e+02 Score=28.28 Aligned_cols=56 Identities=7% Similarity=0.027 Sum_probs=34.4
Q ss_pred CchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccccCCCCccHHHHHHHHHHhhhhcCCCC
Q 003294 303 FNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVATVEAVRLIANHVKVKNCQL 365 (833)
Q Consensus 303 FNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D~~~~Ge~sleiVr~I~~~vK~k~~~v 365 (833)
+.|-+.|..++ + ..+..|..+|...|...=.. .+++..+..|..+.+.+|++|+.+
T Consensus 84 ~~Fl~el~~l~-~---~~~~~Vk~kil~li~~W~~~---f~~~~~l~~i~~~Y~~Lk~~G~~F 139 (140)
T 3ldz_A 84 RDFASEVSNVL-N---KGHPKVCEKLKALMVEWTDE---FKNDPQLSLISAMIKNLKEQGVTF 139 (140)
T ss_dssp HHHHHHHHHHH-H---HSCHHHHHHHHHHHHHHHHH---HTTCGGGTHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHh-c---cCCHHHHHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHccCcC
Confidence 34545544433 3 35678888888877754221 123344557888888888888765
No 55
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=32.51 E-value=2.3e+02 Score=28.15 Aligned_cols=126 Identities=10% Similarity=0.023 Sum_probs=74.9
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Q 003294 203 SLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASE-- 280 (833)
Q Consensus 203 ~Lk~L~~m~~~~~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l~-- 280 (833)
.+..|+..+.+.+..+|..|+.+|..+- + . ..+..|..+-
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~------------~---------~-----------------~~~~~L~~~l~d 65 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRG------------G---------Q-----------------DAVRLAIEFCSD 65 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHC------------C---------H-----------------HHHHHHHHHHTC
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccC------------C---------c-----------------hHHHHHHHHHcC
Confidence 4567777788888888888888877651 0 0 1122222222
Q ss_pred CCcchHHHHHHHHHHHhhcCCCCchHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHhccccCCCCccHHHHHHHHHHhhh
Q 003294 281 KQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVR-NLGSQDVVVRKLCCATIKSLFTNEGKHGGVATVEAVRLIANHVK 359 (833)
Q Consensus 281 ~~~~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~-kLg~~~~~Va~~c~~aL~~Lf~~D~~~~Ge~sleiVr~I~~~vK 359 (833)
.++..+..|+.++..+-.... .-..++.++.. .+++++..|+..++.+|..+-..++ ...-.++..+...+.
T Consensus 66 ~~~~vR~~A~~aL~~l~~~~~---~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~ 138 (280)
T 1oyz_A 66 KNYIRRDIGAFILGQIKICKK---CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAF 138 (280)
T ss_dssp SSHHHHHHHHHHHHHSCCCTT---THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhccccc---cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhh
Confidence 234567788888877632211 22356666663 4688999999999999998865431 223346666666665
Q ss_pred hcCCCCCHHHHHHh
Q 003294 360 VKNCQLHPDFVEVF 373 (833)
Q Consensus 360 ~k~~~v~p~vl~~f 373 (833)
..+..|.-.++..+
T Consensus 139 d~~~~vR~~a~~aL 152 (280)
T 1oyz_A 139 DKSTNVRRATAFAI 152 (280)
T ss_dssp CSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 54433433334443
No 56
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=29.34 E-value=54 Score=35.79 Aligned_cols=120 Identities=13% Similarity=0.188 Sum_probs=77.6
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 003294 204 LKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEKQP 283 (833)
Q Consensus 204 Lk~L~~m~~~~~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l~~~~ 283 (833)
+-.++.++..+|...++|..+.+..+-+. |.--| ..+ ..+.|+ | -...+
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~--~~e~i-Lv~-----Nsl~kD---------------------l--~~~N~ 118 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCI--AEDVI-IVT-----SSLTKD---------------------M--TGKED 118 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTT--SSCGG-GGH-----HHHHHH---------------------H--HSSCH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCC--HHHHH-HHH-----HHHHhh---------------------c--CCCcH
Confidence 44456677888999999999988776332 11111 000 001111 1 12345
Q ss_pred chHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccccCCCCccHHHHHHHHHHhhhhcC
Q 003294 284 VFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVATVEAVRLIANHVKVKN 362 (833)
Q Consensus 284 ~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D~~~~Ge~sleiVr~I~~~vK~k~ 362 (833)
.++-.|+|+||.+.... .-..|...+...|.|+++.|++.++=++..|+..++ +.--..+..+..++..++
T Consensus 119 ~iR~lALRtL~~I~~~~----m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p----e~v~~~~~~l~~ll~d~n 189 (355)
T 3tjz_B 119 SYRGPAVRALCQITDST----MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF----DVVKRWVNEAQEAASSDN 189 (355)
T ss_dssp HHHHHHHHHHHHHCCTT----THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH----HHHHTTHHHHHHHTTCSS
T ss_pred hHHHHHHHHHhcCCCHH----HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH----HHHHHHHHHHHHHhcCCC
Confidence 67899999999996543 456899999999999999999999999999997653 221223444555555544
No 57
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=26.29 E-value=1.3e+02 Score=31.41 Aligned_cols=71 Identities=11% Similarity=0.132 Sum_probs=51.2
Q ss_pred CCCCch--HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccccCCCCccHHHHHHHHHHhhhhcCCCCCHHHHHHhhcc
Q 003294 300 VPHFNC--CEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVATVEAVRLIANHVKVKNCQLHPDFVEVFMSL 376 (833)
Q Consensus 300 ~PhFNf--~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D~~~~Ge~sleiVr~I~~~vK~k~~~v~p~vl~~fL~L 376 (833)
.++|+. ..-++-.+|-++||+.+.|++.+...++.+..-- + .+ .++..+..-++.+|..+..+.++++.++
T Consensus 122 ~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~---~--~~-~v~~~l~~g~ksKN~R~R~e~l~~l~~l 194 (266)
T 2of3_A 122 ETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV---G--PL-KMTPMLLDALKSKNARQRSECLLVIEYY 194 (266)
T ss_dssp TCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH---C--HH-HHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC---C--HH-HHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 355554 2578888999999999999998888887776432 1 22 2666666677888877777777777666
No 58
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=24.14 E-value=1.9e+02 Score=27.80 Aligned_cols=94 Identities=7% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhhcC--------------------CCCc-----hHHHHHHHHHHHhCC-CcH
Q 003294 269 YKAYLQKLIASEKQPVFHQVVVRCICNLLDAV--------------------PHFN-----CCEILLEVVVRNLGS-QDV 322 (833)
Q Consensus 269 Y~~yLq~Le~l~~~~~l~~~Avkclc~LL~~~--------------------PhFN-----f~~nLL~~lV~kLg~-~~~ 322 (833)
+...++.+.....++.-..-|++++-.-|.+. ++|- + ..+.-++..+.. .+.
T Consensus 33 w~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~--~Fl~el~~l~~~~~~~ 110 (163)
T 1x5b_A 33 WSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSR--DFATEVRAVIKNKAHP 110 (163)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSH--HHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhH--HHHHHHHHHHccCCCH
Q ss_pred HHHHHHHHHHHHHhccccCCCCccHHHHHHHHHHhhhhcCCCCCH
Q 003294 323 VVRKLCCATIKSLFTNEGKHGGVATVEAVRLIANHVKVKNCQLHP 367 (833)
Q Consensus 323 ~Va~~c~~aL~~Lf~~D~~~~Ge~sleiVr~I~~~vK~k~~~v~p 367 (833)
.|..+|+..|...=.. ..++..+..|+.+.+.+|.+++.+++
T Consensus 111 ~Vk~kil~li~~W~~~---f~~~~~l~~i~~~Y~~Lk~~G~~FP~ 152 (163)
T 1x5b_A 111 KVCEKLKSLMVEWSEE---FQKDPQFSLISATIKSMKEEGITFPP 152 (163)
T ss_dssp HHHHHHHHHHHHHHHH---TTTCSTTHHHHHHHHHHHTTTCCCCC
T ss_pred HHHHHHHHHHHHHHHH---hcCCcccHHHHHHHHHHHHcCCCCCC
No 59
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=24.12 E-value=78 Score=35.49 Aligned_cols=54 Identities=24% Similarity=0.270 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhhcC---CCCchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccc
Q 003294 286 HQVVVRCICNLLDAV---PHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNE 339 (833)
Q Consensus 286 ~~~Avkclc~LL~~~---PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D 339 (833)
...|+.+++.|.... +.+..-..++..++..|.+.+..|..-+|.+|..+....
T Consensus 226 ~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~ 282 (529)
T 3tpo_A 226 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP 282 (529)
T ss_dssp HHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhh
Confidence 445666676666543 344444578889999999999999999999999988643
No 60
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=23.53 E-value=2.3e+02 Score=25.05 Aligned_cols=86 Identities=10% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cC
Q 003294 204 LKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIAS--EK 281 (833)
Q Consensus 204 Lk~L~~m~~~~~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l--~~ 281 (833)
+..|+.++.+.+..||..|+.+|..+ .+ ...+..|..+ ..
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~-~~-------------------------------------~~a~~~L~~~L~d~ 85 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNF-QD-------------------------------------ERAVEPLIKLLEDD 85 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGG-CS-------------------------------------HHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhc-CC-------------------------------------HHHHHHHHHHHcCC
Q ss_pred CcchHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 003294 282 QPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSL 335 (833)
Q Consensus 282 ~~~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~L 335 (833)
++..+..|+.++..+= ....+..++..|.+++..|+..++.+|..+
T Consensus 86 ~~~VR~~A~~aL~~~~--------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 86 SGFVRSGAARSLEQIG--------GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp CTHHHHHHHHHHHHHC--------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred CHHHHHHHHHHHHHhC--------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
No 61
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=23.46 E-value=2.9e+02 Score=30.61 Aligned_cols=123 Identities=18% Similarity=0.200 Sum_probs=72.1
Q ss_pred HHHHHHhCHHHhH-----HHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHH
Q 003294 189 LGMALLADPESNI-----KSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYES 263 (833)
Q Consensus 189 L~~~IledPe~ni-----~~Lk~L~~m~~~~~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~ 263 (833)
|+...-.+|++.- +.+..|+.++.+.+..++..|+.+|..+-.| +.+.+ -.-.+.
T Consensus 125 L~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d-------------------~~~~r-~~v~~~ 184 (510)
T 3ul1_B 125 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD-------------------GSAFR-DLVIKH 184 (510)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-------------------CHHHH-HHHHHT
T ss_pred HHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-------------------CHHHH-HHHHHc
Confidence 3333344565532 3566778888777778877777777666322 00000 000111
Q ss_pred HHHHHHHHHHHHHHHhcCCc-------chHHHHHHHHHHHhhcC---CCCchHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003294 264 TLLSAYKAYLQKLIASEKQP-------VFHQVVVRCICNLLDAV---PHFNCCEILLEVVVRNLGSQDVVVRKLCCATIK 333 (833)
Q Consensus 264 ~Ll~~Y~~yLq~Le~l~~~~-------~l~~~Avkclc~LL~~~---PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~ 333 (833)
+ -+..|..+...+ .+...|+.+++.+.... +.+..-..++..++..|.+.+..|...+|.+|.
T Consensus 185 G-------~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~ 257 (510)
T 3ul1_B 185 G-------AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 257 (510)
T ss_dssp T-------CHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred C-------ChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1 122333332221 23445666777776543 334444578889999999999999999999999
Q ss_pred HHhcc
Q 003294 334 SLFTN 338 (833)
Q Consensus 334 ~Lf~~ 338 (833)
.|-..
T Consensus 258 ~L~~~ 262 (510)
T 3ul1_B 258 YLTDG 262 (510)
T ss_dssp HHTSS
T ss_pred HHhhc
Confidence 98754
No 62
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=22.11 E-value=4e+02 Score=29.59 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=42.5
Q ss_pred cchHHHHHHHHHHHhhcCCCCch----HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccc
Q 003294 283 PVFHQVVVRCICNLLDAVPHFNC----CEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNE 339 (833)
Q Consensus 283 ~~l~~~Avkclc~LL~~~PhFNf----~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D 339 (833)
...+..|+.++|.|.......+. ....+..+++.|.++|.++...|+++|..+|+..
T Consensus 391 ~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 451 (529)
T 3tpo_A 391 FKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 451 (529)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 34677788888888765432111 1245778999999999999999999999999754
No 63
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=21.42 E-value=1e+03 Score=27.92 Aligned_cols=123 Identities=11% Similarity=0.175 Sum_probs=68.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhhccccccccccccccCCCCCCCccchHHHHh-hhhhccccCChhhHHHHHHHHHHHhcCC
Q 003294 449 RMQTETISAVFETYFRILKHTMMFTAVSSEANASSIGGASGAHPLLAPCLK-GLGKFSHLIDLDYIGDLMNYLKRLAGGG 527 (833)
Q Consensus 449 K~qteiL~~vF~iYFRILK~~~~~~~~~~~~~~~a~p~a~~~s~LL~~vLe-GL~KfaHlIN~df~~DLl~vL~~Li~~~ 527 (833)
+--.+.|..+..+.|..++..... .-++ |= -.++|.+|+.++..+|-..
T Consensus 348 ~~~~~KLD~im~llf~~~~~~~~~-----------------------~~l~~~~-------~~~lf~~Ll~~F~~~ILpT 397 (649)
T 3tj1_A 348 KELSTKLDSILTLVSTHVEEQVTP-----------------------ESLESGE-------GVGVFNTLTTLFKTHVLPT 397 (649)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCH-----------------------HHHHSST-------HHHHHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCC-----------------------Cccccch-------HHHHHHHHHHHHHHhcccc
Confidence 455778888888888888765210 0010 10 0368999999999977431
Q ss_pred CCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccCChHHHHHHHHHhhhccCCC-CChHHHHHHHHHHHhhcccCC
Q 003294 528 SSNDGPSQKNSNHLTVTERLRCCIVAFRVMRNNLDALNVDLQDFFVQLYNLILEYRPG-RDQGEVLAEALKIMLCDDRQH 606 (833)
Q Consensus 528 ~~~~~~~~~~~~~ls~~~~L~ci~taf~LL~~~g~alnvD~~rFY~~LY~~L~~~~~~-~~~~~~ll~~L~~~L~~~~~~ 606 (833)
+. +-..+ ...|.+.+-..+ + ...|...|...++++.-. ..+.. -..-|-.++.+.+.+
T Consensus 398 ~~------------sr~vQ----Fl~Fy~cs~~~~-~---~~~Fl~~L~~~~~~~~~~~~~Rqa-AaaYLaSflARAk~v 456 (649)
T 3tj1_A 398 YY------------TRSIQ----YIMFHVSQQQLE-L---MDSFLVTLIDISFAVNEAAEKKIK-SLQYLGSYIARAKKL 456 (649)
T ss_dssp CS------------CSSTT----HHHHHHHTTSHH-H---HHHHHHHHHHHHHCSSSCHHHHHH-HHHHHHHHHHHBTTC
T ss_pred cc------------CccHH----HHHHHHHhCCHH-H---HHHHHHHHHHHHhCCCCcHHHHHH-HHHHHHHHHHHHhcC
Confidence 11 11111 233555543221 1 468888888888764321 11110 112233445555678
Q ss_pred cHHHHHHHHHHHHHHH
Q 003294 607 DMQKAAAFVKRLATFS 622 (833)
Q Consensus 607 ~~~RVAAFiKRLl~~s 622 (833)
+..-|..-+.+|++.+
T Consensus 457 ~~~~v~~vl~~L~~wl 472 (649)
T 3tj1_A 457 SRTQIIFVASYLTSWL 472 (649)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8888888888877755
No 64
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=21.42 E-value=9.1e+02 Score=29.53 Aligned_cols=68 Identities=10% Similarity=0.107 Sum_probs=46.5
Q ss_pred HHHHHHHHHh--cCCcchHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccc
Q 003294 270 KAYLQKLIAS--EKQPVFHQVVVRCICNLLDAVPH-FNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNE 339 (833)
Q Consensus 270 ~~yLq~Le~l--~~~~~l~~~Avkclc~LL~~~Ph-FNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D 339 (833)
...++.|... ...+.+...+++|+...+.--|- .=+.++++..+...|++ +.++..||+||..++..-
T Consensus 192 ~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~ 262 (980)
T 3ibv_A 192 SFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKK 262 (980)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcC
Confidence 3334444443 23556778899999988874331 11225889999988886 678889999999988763
No 65
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=20.37 E-value=1.1e+02 Score=28.62 Aligned_cols=49 Identities=14% Similarity=0.170 Sum_probs=42.1
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccc
Q 003294 289 VVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNE 339 (833)
Q Consensus 289 Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~aL~~Lf~~D 339 (833)
.+--+|+++.+.|. -...-+..+..+|+++++.+...++..|..+.+|=
T Consensus 25 ~ileicD~I~~~~~--~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNc 73 (140)
T 3ldz_A 25 LILDICDKVGQSRT--GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNC 73 (140)
T ss_dssp HHHHHHHHHTTSTT--HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCc--CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhc
Confidence 56679999999884 45689999999999999999988999998998883
Done!