Query 003295
Match_columns 833
No_of_seqs 856 out of 3811
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 20:47:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003295.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003295hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3.6E-87 7.8E-92 792.0 71.5 680 78-816 48-731 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 2.8E-81 6.1E-86 741.7 73.5 661 114-831 48-710 (857)
3 PLN03218 maturation of RBCL 1; 100.0 5.2E-72 1.1E-76 646.7 70.5 548 248-813 366-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 6.3E-72 1.4E-76 645.9 69.3 541 183-743 373-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 5.4E-64 1.2E-68 580.0 53.4 511 216-812 85-610 (697)
6 PLN03081 pentatricopeptide (PP 100.0 4.2E-63 9.2E-68 572.6 52.8 476 284-811 84-562 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.4E-39 9.6E-44 391.4 88.9 711 91-830 169-889 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-38 2.6E-43 387.6 87.0 688 91-805 203-899 (899)
9 PRK11447 cellulose synthase su 100.0 1.7E-27 3.7E-32 289.3 78.9 647 117-811 28-746 (1157)
10 PRK11447 cellulose synthase su 100.0 8.6E-27 1.9E-31 283.2 73.2 594 195-806 40-700 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 2.8E-23 6.1E-28 240.3 71.3 592 183-811 45-709 (987)
12 PRK09782 bacteriophage N4 rece 100.0 1.6E-22 3.5E-27 234.1 73.3 640 94-812 57-744 (987)
13 KOG2002 TPR-containing nuclear 99.9 3E-19 6.6E-24 192.6 65.5 664 117-816 41-755 (1018)
14 KOG4626 O-linked N-acetylgluco 99.9 3.5E-22 7.7E-27 203.7 39.5 430 326-770 52-484 (966)
15 KOG2002 TPR-containing nuclear 99.9 3.7E-19 8.1E-24 191.9 61.3 536 190-737 171-746 (1018)
16 KOG4626 O-linked N-acetylgluco 99.9 4E-21 8.7E-26 196.1 42.4 439 192-647 57-500 (966)
17 PRK11788 tetratricopeptide rep 99.9 5E-20 1.1E-24 200.1 36.4 303 504-813 42-354 (389)
18 PRK11788 tetratricopeptide rep 99.9 4.6E-20 1E-24 200.4 34.0 303 225-568 42-354 (389)
19 TIGR00990 3a0801s09 mitochondr 99.9 3.2E-18 6.8E-23 195.8 50.4 430 288-771 128-571 (615)
20 TIGR00990 3a0801s09 mitochondr 99.9 9.8E-18 2.1E-22 191.8 53.7 435 253-736 128-571 (615)
21 PRK15174 Vi polysaccharide exp 99.9 2.3E-17 5E-22 187.8 48.4 331 430-770 45-380 (656)
22 KOG2076 RNA polymerase III tra 99.9 3.5E-15 7.5E-20 160.7 60.6 363 193-559 149-553 (895)
23 PRK15174 Vi polysaccharide exp 99.9 2.4E-17 5.1E-22 187.7 47.1 330 223-560 47-380 (656)
24 KOG0495 HAT repeat protein [RN 99.9 1.3E-14 2.7E-19 150.1 61.4 584 199-819 267-858 (913)
25 PRK10049 pgaA outer membrane p 99.8 1.2E-16 2.5E-21 186.2 46.9 158 223-384 20-177 (765)
26 PRK14574 hmsH outer membrane p 99.8 2.1E-15 4.5E-20 171.8 52.8 431 332-811 44-516 (822)
27 PRK10049 pgaA outer membrane p 99.8 3.8E-16 8.3E-21 181.9 48.0 395 330-770 23-455 (765)
28 KOG0495 HAT repeat protein [RN 99.8 4.6E-13 9.9E-18 138.8 62.4 544 230-805 327-879 (913)
29 PRK14574 hmsH outer membrane p 99.8 1.1E-14 2.4E-19 165.9 54.5 443 194-666 45-513 (822)
30 KOG2076 RNA polymerase III tra 99.8 2.6E-14 5.6E-19 154.1 53.1 372 219-593 140-552 (895)
31 KOG4422 Uncharacterized conser 99.8 1.9E-14 4.2E-19 141.6 43.3 361 391-788 206-607 (625)
32 KOG4422 Uncharacterized conser 99.8 2.3E-14 4.9E-19 141.1 42.5 444 195-737 127-591 (625)
33 KOG1915 Cell cycle control pro 99.7 4.2E-12 9.2E-17 127.0 51.8 162 218-384 73-234 (677)
34 KOG2003 TPR repeat-containing 99.7 1E-13 2.2E-18 137.3 38.8 281 504-792 426-709 (840)
35 KOG2003 TPR repeat-containing 99.7 3.9E-14 8.4E-19 140.2 35.4 474 257-757 206-709 (840)
36 KOG1915 Cell cycle control pro 99.7 1.5E-11 3.2E-16 123.1 49.6 443 195-679 85-547 (677)
37 KOG4318 Bicoid mRNA stability 99.6 3.2E-12 7E-17 137.2 38.5 557 207-804 14-623 (1088)
38 KOG0547 Translocase of outer m 99.6 3.1E-12 6.7E-17 128.7 35.6 217 580-805 339-565 (606)
39 KOG1155 Anaphase-promoting com 99.6 9.7E-11 2.1E-15 117.4 42.2 329 389-734 161-493 (559)
40 KOG4318 Bicoid mRNA stability 99.6 2.5E-11 5.3E-16 130.6 38.2 531 241-810 13-598 (1088)
41 TIGR00540 hemY_coli hemY prote 99.6 7.7E-12 1.7E-16 135.3 35.4 291 509-805 96-398 (409)
42 KOG1155 Anaphase-promoting com 99.6 3.3E-10 7.2E-15 113.7 43.5 381 424-823 161-551 (559)
43 KOG2047 mRNA splicing factor [ 99.6 1.1E-08 2.3E-13 107.0 55.4 544 218-792 102-709 (835)
44 PRK10747 putative protoheme IX 99.6 1.4E-11 3E-16 132.5 35.9 286 510-805 97-389 (398)
45 TIGR00540 hemY_coli hemY prote 99.6 2.9E-11 6.3E-16 130.8 37.4 293 473-770 95-398 (409)
46 KOG1173 Anaphase-promoting com 99.6 2.5E-10 5.4E-15 117.6 40.9 284 531-822 243-532 (611)
47 PF13429 TPR_15: Tetratricopep 99.5 3.9E-14 8.5E-19 145.4 12.6 261 537-805 13-276 (280)
48 KOG2047 mRNA splicing factor [ 99.5 1.3E-08 2.8E-13 106.3 52.3 543 118-722 103-709 (835)
49 KOG0547 Translocase of outer m 99.5 8.7E-11 1.9E-15 118.5 35.0 423 223-700 120-565 (606)
50 KOG3785 Uncharacterized conser 99.5 9.5E-10 2.1E-14 106.4 40.2 450 225-710 29-497 (557)
51 PRK10747 putative protoheme IX 99.5 4.4E-11 9.5E-16 128.6 35.2 286 475-770 97-389 (398)
52 KOG1173 Anaphase-promoting com 99.5 3.2E-10 6.9E-15 116.8 38.4 508 250-787 14-532 (611)
53 PF13429 TPR_15: Tetratricopep 99.5 1E-13 2.3E-18 142.3 12.9 262 502-770 13-276 (280)
54 KOG4162 Predicted calmodulin-b 99.5 5.6E-09 1.2E-13 111.7 48.2 486 299-805 239-782 (799)
55 KOG3785 Uncharacterized conser 99.5 3.3E-09 7.1E-14 102.7 39.1 452 298-780 33-497 (557)
56 KOG1126 DNA-binding cell divis 99.5 2.6E-11 5.5E-16 127.5 25.9 282 478-770 335-619 (638)
57 KOG0985 Vesicle coat protein c 99.5 4.6E-08 1E-12 106.9 50.6 563 204-823 593-1260(1666)
58 KOG4162 Predicted calmodulin-b 99.4 2.4E-08 5.1E-13 107.1 47.0 285 478-771 460-783 (799)
59 KOG1126 DNA-binding cell divis 99.4 4.4E-11 9.4E-16 125.8 25.9 280 443-737 335-621 (638)
60 COG3071 HemY Uncharacterized e 99.4 1.1E-09 2.4E-14 108.6 33.7 286 510-805 97-389 (400)
61 COG2956 Predicted N-acetylgluc 99.4 4.2E-10 9.1E-15 107.9 29.5 293 509-808 47-349 (389)
62 COG2956 Predicted N-acetylgluc 99.4 8E-10 1.7E-14 106.0 31.4 288 476-770 49-346 (389)
63 COG3071 HemY Uncharacterized e 99.4 1.6E-09 3.4E-14 107.5 34.5 252 475-735 131-389 (400)
64 KOG2376 Signal recognition par 99.4 1.1E-08 2.4E-13 106.2 39.5 459 256-767 16-516 (652)
65 KOG1156 N-terminal acetyltrans 99.4 4.4E-08 9.5E-13 103.0 44.0 470 290-804 11-509 (700)
66 KOG0985 Vesicle coat protein c 99.4 5.9E-07 1.3E-11 98.5 53.1 243 94-372 589-887 (1666)
67 KOG1156 N-terminal acetyltrans 99.4 9.5E-08 2.1E-12 100.5 44.3 460 255-769 11-509 (700)
68 KOG2376 Signal recognition par 99.4 8.2E-08 1.8E-12 99.9 42.9 220 220-459 14-256 (652)
69 PRK12370 invasion protein regu 99.3 4E-10 8.6E-15 126.7 28.3 216 197-420 275-501 (553)
70 TIGR02521 type_IV_pilW type IV 99.3 1.3E-09 2.9E-14 108.9 26.9 200 602-805 31-231 (234)
71 TIGR02521 type_IV_pilW type IV 99.3 1.2E-09 2.6E-14 109.2 25.8 201 217-420 30-231 (234)
72 PF13041 PPR_2: PPR repeat fam 99.3 5.1E-12 1.1E-16 90.4 6.0 49 285-333 1-49 (50)
73 KOG3617 WD40 and TPR repeat-co 99.3 2.8E-07 6.2E-12 98.8 43.2 135 195-348 740-884 (1416)
74 KOG3617 WD40 and TPR repeat-co 99.3 8.3E-07 1.8E-11 95.4 46.2 404 115-620 755-1189(1416)
75 PF13041 PPR_2: PPR repeat fam 99.3 7.8E-12 1.7E-16 89.5 6.2 50 250-299 1-50 (50)
76 PRK12370 invasion protein regu 99.3 1.6E-09 3.4E-14 122.0 28.0 214 581-805 318-534 (553)
77 PF12569 NARP1: NMDA receptor- 99.3 1.2E-07 2.7E-12 102.8 39.5 306 258-595 10-333 (517)
78 KOG1127 TPR repeat-containing 99.2 2.6E-07 5.6E-12 101.6 41.1 581 199-805 474-1103(1238)
79 KOG1129 TPR repeat-containing 99.2 1.1E-09 2.4E-14 104.9 20.0 228 536-770 227-457 (478)
80 KOG1129 TPR repeat-containing 99.2 8.6E-10 1.9E-14 105.6 19.1 238 566-811 222-461 (478)
81 KOG1174 Anaphase-promoting com 99.2 5.1E-07 1.1E-11 89.8 37.9 293 474-777 208-504 (564)
82 PF12569 NARP1: NMDA receptor- 99.2 2.5E-07 5.3E-12 100.5 39.6 130 499-630 196-333 (517)
83 KOG1127 TPR repeat-containing 99.2 6E-07 1.3E-11 98.8 41.9 624 181-825 493-1193(1238)
84 KOG1174 Anaphase-promoting com 99.2 1.6E-06 3.4E-11 86.4 39.3 292 508-811 207-503 (564)
85 KOG1840 Kinesin light chain [C 99.2 1.6E-08 3.6E-13 108.0 27.9 253 567-819 199-498 (508)
86 KOG1840 Kinesin light chain [C 99.2 2E-08 4.4E-13 107.3 27.5 203 467-699 246-477 (508)
87 PRK11189 lipoprotein NlpI; Pro 99.1 2.8E-08 6E-13 102.3 25.8 218 198-423 41-267 (296)
88 COG3063 PilF Tfp pilus assembl 99.1 8.2E-08 1.8E-12 88.4 24.5 206 605-816 38-244 (250)
89 KOG3616 Selective LIM binding 99.1 2.1E-06 4.5E-11 91.1 37.7 193 539-765 739-931 (1636)
90 KOG3616 Selective LIM binding 99.1 1.3E-05 2.7E-10 85.4 41.9 492 224-801 621-1129(1636)
91 PRK11189 lipoprotein NlpI; Pro 99.1 1.1E-07 2.3E-12 98.0 26.6 217 545-770 39-264 (296)
92 KOG0548 Molecular co-chaperone 99.0 1.6E-06 3.4E-11 89.9 33.5 106 258-367 8-114 (539)
93 COG3063 PilF Tfp pilus assembl 99.0 3.8E-07 8.2E-12 84.2 24.6 209 569-783 37-246 (250)
94 KOG0548 Molecular co-chaperone 99.0 1.8E-06 4E-11 89.4 31.9 221 432-667 229-456 (539)
95 cd05804 StaR_like StaR_like; a 99.0 2.5E-06 5.4E-11 91.4 35.3 304 499-806 8-336 (355)
96 cd05804 StaR_like StaR_like; a 99.0 2.1E-06 4.6E-11 91.9 33.9 92 327-419 119-213 (355)
97 KOG4340 Uncharacterized conser 98.9 1.7E-06 3.8E-11 82.3 27.2 193 222-424 14-210 (459)
98 KOG2053 Mitochondrial inherita 98.9 0.00015 3.3E-09 79.9 45.7 137 228-368 19-155 (932)
99 KOG1914 mRNA cleavage and poly 98.9 0.00014 2.9E-09 75.7 42.2 428 211-666 14-501 (656)
100 PRK04841 transcriptional regul 98.9 1.9E-05 4.1E-10 96.1 41.8 303 469-771 416-760 (903)
101 KOG4340 Uncharacterized conser 98.9 1.2E-05 2.7E-10 76.7 29.8 317 254-593 12-336 (459)
102 KOG0624 dsRNA-activated protei 98.8 5.8E-05 1.3E-09 73.7 34.5 328 320-701 36-370 (504)
103 KOG0624 dsRNA-activated protei 98.8 3.7E-05 8E-10 75.1 31.5 325 221-596 41-370 (504)
104 PRK04841 transcriptional regul 98.8 2.5E-05 5.4E-10 95.0 38.1 371 364-737 348-761 (903)
105 PF12854 PPR_1: PPR repeat 98.8 7.1E-09 1.5E-13 66.3 3.7 32 282-313 2-33 (34)
106 KOG1125 TPR repeat-containing 98.8 7.1E-07 1.5E-11 93.1 19.9 256 540-829 293-559 (579)
107 PF04733 Coatomer_E: Coatomer 98.7 4.8E-07 1E-11 91.6 17.4 149 611-770 111-264 (290)
108 PF04733 Coatomer_E: Coatomer 98.7 4.8E-07 1E-11 91.6 16.3 248 542-805 11-264 (290)
109 KOG1914 mRNA cleavage and poly 98.7 0.00083 1.8E-08 70.1 43.6 429 245-700 13-500 (656)
110 PF12854 PPR_1: PPR repeat 98.7 2.3E-08 5E-13 63.9 3.9 34 246-279 1-34 (34)
111 KOG2053 Mitochondrial inherita 98.7 0.0014 3.1E-08 72.6 49.9 532 193-769 19-606 (932)
112 KOG1125 TPR repeat-containing 98.7 4.2E-06 9.1E-11 87.6 21.7 219 471-699 294-525 (579)
113 PLN02789 farnesyltranstransfer 98.6 2.3E-05 5E-10 80.5 25.7 203 231-438 50-266 (320)
114 KOG1128 Uncharacterized conser 98.6 1.3E-05 2.8E-10 86.1 22.4 217 568-805 399-615 (777)
115 PLN02789 farnesyltranstransfer 98.6 9.4E-05 2E-09 76.1 28.3 203 546-754 51-267 (320)
116 KOG1070 rRNA processing protei 98.6 2E-05 4.4E-10 90.1 25.0 215 204-425 1445-1667(1710)
117 KOG1070 rRNA processing protei 98.5 7.8E-05 1.7E-09 85.6 27.0 220 568-793 1459-1687(1710)
118 TIGR03302 OM_YfiO outer membra 98.5 1.8E-05 3.8E-10 79.1 20.0 185 217-421 32-232 (235)
119 PRK10370 formate-dependent nit 98.5 2.7E-05 6E-10 74.4 20.1 118 685-805 52-172 (198)
120 PRK14720 transcript cleavage f 98.4 0.008 1.7E-07 69.3 44.8 238 217-508 30-268 (906)
121 TIGR03302 OM_YfiO outer membra 98.4 2.9E-05 6.3E-10 77.5 19.9 188 250-457 31-233 (235)
122 KOG1128 Uncharacterized conser 98.4 7.1E-05 1.5E-09 80.7 23.1 216 464-700 400-615 (777)
123 PRK15359 type III secretion sy 98.4 1.1E-05 2.4E-10 72.8 14.7 91 713-805 30-120 (144)
124 COG5010 TadD Flp pilus assembl 98.4 6.3E-05 1.4E-09 71.5 19.9 160 222-384 70-229 (257)
125 PRK14720 transcript cleavage f 98.4 0.0002 4.3E-09 82.0 27.6 240 248-543 27-268 (906)
126 COG5010 TadD Flp pilus assembl 98.4 8.9E-05 1.9E-09 70.5 20.3 125 637-764 100-224 (257)
127 PRK15179 Vi polysaccharide bio 98.4 0.00017 3.7E-09 81.9 26.3 132 601-735 85-216 (694)
128 PRK10370 formate-dependent nit 98.3 3.1E-05 6.7E-10 74.0 16.2 113 201-315 57-172 (198)
129 PRK15359 type III secretion sy 98.3 6.3E-05 1.4E-09 67.9 17.1 92 677-770 29-120 (144)
130 COG4783 Putative Zn-dependent 98.3 0.00026 5.7E-09 73.2 22.9 200 232-456 251-454 (484)
131 PRK15179 Vi polysaccharide bio 98.3 0.00028 6.1E-09 80.2 25.4 161 636-806 85-245 (694)
132 TIGR02552 LcrH_SycD type III s 98.2 3.4E-05 7.3E-10 69.3 14.5 96 708-805 18-113 (135)
133 KOG3081 Vesicle coat complex C 98.2 0.0005 1.1E-08 65.4 22.0 105 683-792 148-256 (299)
134 KOG3081 Vesicle coat complex C 98.2 0.00051 1.1E-08 65.3 22.1 139 504-653 115-257 (299)
135 COG4783 Putative Zn-dependent 98.2 0.00063 1.4E-08 70.5 23.2 110 614-727 318-428 (484)
136 KOG3060 Uncharacterized conser 98.2 0.001 2.2E-08 62.8 22.4 188 579-770 24-219 (289)
137 TIGR02552 LcrH_SycD type III s 98.1 8.3E-05 1.8E-09 66.7 15.0 116 659-779 5-120 (135)
138 KOG3060 Uncharacterized conser 98.1 0.0028 6.1E-08 60.0 23.8 189 544-737 24-221 (289)
139 TIGR00756 PPR pentatricopeptid 98.0 1E-05 2.2E-10 52.7 4.3 31 290-320 3-33 (35)
140 TIGR00756 PPR pentatricopeptid 98.0 1.2E-05 2.6E-10 52.3 4.3 35 253-287 1-35 (35)
141 PF07079 DUF1347: Protein of u 97.9 0.036 7.8E-07 57.2 43.8 443 333-817 17-530 (549)
142 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00033 7.2E-09 73.5 16.5 122 676-804 173-295 (395)
143 PF09976 TPR_21: Tetratricopep 97.9 0.0004 8.7E-09 63.0 14.3 125 675-803 15-144 (145)
144 PF07079 DUF1347: Protein of u 97.9 0.046 1E-06 56.4 46.4 88 689-783 438-531 (549)
145 PF09976 TPR_21: Tetratricopep 97.8 0.00078 1.7E-08 61.1 14.5 82 231-312 24-110 (145)
146 PF13812 PPR_3: Pentatricopept 97.8 3.8E-05 8.2E-10 49.5 4.2 28 255-282 4-31 (34)
147 PF13812 PPR_3: Pentatricopept 97.8 4.4E-05 9.5E-10 49.2 4.2 33 288-320 2-34 (34)
148 KOG2041 WD40 repeat protein [G 97.7 0.037 8E-07 59.8 26.8 214 198-451 678-902 (1189)
149 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.0011 2.5E-08 69.5 16.0 123 606-735 173-296 (395)
150 KOG0550 Molecular chaperone (D 97.7 0.011 2.3E-07 60.1 21.6 201 610-818 177-397 (486)
151 KOG0553 TPR repeat-containing 97.7 0.0005 1.1E-08 66.9 11.7 99 679-782 88-187 (304)
152 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.1 2.2E-06 53.8 38.3 458 217-717 41-545 (660)
153 PF01535 PPR: PPR repeat; Int 97.6 6.1E-05 1.3E-09 47.3 3.5 26 290-315 3-28 (31)
154 PRK10153 DNA-binding transcrip 97.6 0.0027 5.9E-08 70.0 18.6 72 741-816 419-490 (517)
155 PRK15363 pathogenicity island 97.6 0.00085 1.8E-08 59.6 11.6 94 710-805 38-131 (157)
156 cd00189 TPR Tetratricopeptide 97.6 0.00078 1.7E-08 55.6 11.3 93 711-805 4-96 (100)
157 PF01535 PPR: PPR repeat; Int 97.6 7.2E-05 1.6E-09 46.9 3.3 31 253-283 1-31 (31)
158 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.13 2.9E-06 52.9 33.9 130 672-805 397-530 (660)
159 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0021 4.5E-08 55.9 13.4 92 711-805 6-104 (119)
160 KOG0550 Molecular chaperone (D 97.6 0.0092 2E-07 60.5 18.9 299 499-826 51-371 (486)
161 cd00189 TPR Tetratricopeptide 97.5 0.0011 2.4E-08 54.6 11.1 91 223-314 5-95 (100)
162 PLN03088 SGT1, suppressor of 97.5 0.0018 4E-08 68.4 14.6 100 678-781 8-107 (356)
163 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0025 5.3E-08 55.5 13.2 96 221-316 5-105 (119)
164 PF10037 MRP-S27: Mitochondria 97.5 0.0017 3.8E-08 68.4 13.4 122 634-755 63-186 (429)
165 PLN03088 SGT1, suppressor of 97.4 0.0029 6.2E-08 66.9 14.9 98 643-744 8-105 (356)
166 PF08579 RPM2: Mitochondrial r 97.4 0.0015 3.2E-08 53.7 9.3 78 327-404 30-116 (120)
167 PF12895 Apc3: Anaphase-promot 97.4 0.00025 5.4E-09 57.3 4.9 80 720-802 2-83 (84)
168 KOG0553 TPR repeat-containing 97.4 0.002 4.4E-08 62.7 11.7 129 644-777 88-221 (304)
169 PF14938 SNAP: Soluble NSF att 97.4 0.035 7.7E-07 56.7 21.8 63 499-561 157-225 (282)
170 PF12895 Apc3: Anaphase-promot 97.4 0.0003 6.5E-09 56.8 5.3 81 685-767 2-83 (84)
171 PRK10866 outer membrane biogen 97.4 0.058 1.3E-06 53.4 22.5 182 218-418 32-238 (243)
172 COG4700 Uncharacterized protei 97.4 0.034 7.4E-07 50.1 18.2 131 669-803 86-219 (251)
173 PRK02603 photosystem I assembl 97.4 0.0066 1.4E-07 56.9 15.0 90 218-308 35-127 (172)
174 PF05843 Suf: Suppressor of fo 97.4 0.0034 7.3E-08 63.9 13.8 128 220-350 3-135 (280)
175 PF05843 Suf: Suppressor of fo 97.4 0.0027 5.8E-08 64.6 13.1 130 638-770 2-135 (280)
176 PF08579 RPM2: Mitochondrial r 97.3 0.0022 4.8E-08 52.7 9.4 42 258-299 31-73 (120)
177 PF10037 MRP-S27: Mitochondria 97.3 0.0034 7.5E-08 66.2 13.6 124 527-650 61-186 (429)
178 PRK15363 pathogenicity island 97.3 0.011 2.4E-07 52.7 14.6 96 499-596 37-132 (157)
179 PRK10866 outer membrane biogen 97.3 0.11 2.3E-06 51.6 23.3 60 503-563 38-100 (243)
180 PRK10153 DNA-binding transcrip 97.3 0.012 2.7E-07 64.9 18.2 89 689-781 401-490 (517)
181 KOG1130 Predicted G-alpha GTPa 97.3 0.0039 8.6E-08 62.8 12.7 132 674-805 197-343 (639)
182 PRK02603 photosystem I assembl 97.3 0.009 2E-07 56.0 14.9 82 675-757 38-121 (172)
183 PF14938 SNAP: Soluble NSF att 97.3 0.13 2.8E-06 52.6 24.4 64 464-527 157-226 (282)
184 KOG2280 Vacuolar assembly/sort 97.2 0.51 1.1E-05 52.2 28.7 344 421-801 426-794 (829)
185 KOG2041 WD40 repeat protein [G 97.2 0.48 1.1E-05 51.7 30.5 49 745-793 1024-1073(1189)
186 KOG1130 Predicted G-alpha GTPa 97.2 0.0056 1.2E-07 61.8 12.2 284 470-769 25-342 (639)
187 CHL00033 ycf3 photosystem I as 97.1 0.0079 1.7E-07 56.1 12.8 61 675-735 38-100 (168)
188 CHL00033 ycf3 photosystem I as 97.1 0.0085 1.8E-07 55.9 12.9 93 324-417 37-138 (168)
189 COG4700 Uncharacterized protei 97.1 0.073 1.6E-06 48.1 17.0 131 216-348 87-219 (251)
190 KOG1538 Uncharacterized conser 97.1 0.087 1.9E-06 56.6 20.4 103 356-487 555-657 (1081)
191 COG4235 Cytochrome c biogenesi 97.1 0.024 5.3E-07 55.8 15.4 99 705-805 154-255 (287)
192 PF13414 TPR_11: TPR repeat; P 97.0 0.0025 5.3E-08 49.1 6.9 63 741-805 2-66 (69)
193 PF06239 ECSIT: Evolutionarily 97.0 0.0097 2.1E-07 55.5 11.7 114 238-371 34-152 (228)
194 KOG1538 Uncharacterized conser 97.0 0.13 2.8E-06 55.4 21.0 56 531-595 746-801 (1081)
195 KOG2796 Uncharacterized conser 97.0 0.15 3.2E-06 48.8 19.3 141 638-781 178-323 (366)
196 PF04840 Vps16_C: Vps16, C-ter 97.0 0.54 1.2E-05 48.5 27.4 108 605-732 180-287 (319)
197 PF06239 ECSIT: Evolutionarily 97.0 0.016 3.5E-07 54.1 12.7 103 669-790 44-151 (228)
198 PF13414 TPR_11: TPR repeat; P 97.0 0.0023 5.1E-08 49.2 6.4 64 706-770 2-66 (69)
199 PF14559 TPR_19: Tetratricopep 97.0 0.0027 5.8E-08 48.7 6.7 51 754-805 3-53 (68)
200 PF13432 TPR_16: Tetratricopep 97.0 0.0029 6.2E-08 48.0 6.7 54 716-770 6-59 (65)
201 PF13432 TPR_16: Tetratricopep 96.9 0.004 8.7E-08 47.2 7.1 57 225-281 4-60 (65)
202 PF14559 TPR_19: Tetratricopep 96.9 0.0021 4.6E-08 49.3 5.6 52 230-281 3-54 (68)
203 COG3898 Uncharacterized membra 96.9 0.6 1.3E-05 47.5 32.9 300 500-811 85-397 (531)
204 COG4235 Cytochrome c biogenesi 96.9 0.047 1E-06 53.9 15.4 116 246-365 150-268 (287)
205 PF12688 TPR_5: Tetratrico pep 96.8 0.064 1.4E-06 46.1 14.2 55 716-770 10-66 (120)
206 PF12688 TPR_5: Tetratrico pep 96.8 0.058 1.3E-06 46.3 13.7 84 196-279 14-102 (120)
207 PF13525 YfiO: Outer membrane 96.7 0.15 3.2E-06 49.2 18.1 167 224-411 11-197 (203)
208 KOG2796 Uncharacterized conser 96.6 0.32 7E-06 46.6 18.5 131 535-666 180-315 (366)
209 KOG2114 Vacuolar assembly/sort 96.6 0.9 1.9E-05 51.0 24.1 117 222-347 338-456 (933)
210 PRK10803 tol-pal system protei 96.5 0.032 6.9E-07 55.7 12.1 84 718-805 154-245 (263)
211 PRK15331 chaperone protein Sic 96.5 0.11 2.4E-06 46.6 13.7 90 714-805 44-133 (165)
212 PF13525 YfiO: Outer membrane 96.4 0.31 6.6E-06 47.0 18.0 58 470-527 13-72 (203)
213 PRK10803 tol-pal system protei 96.2 0.06 1.3E-06 53.8 12.2 87 229-315 154-245 (263)
214 PF13371 TPR_9: Tetratricopept 96.2 0.027 5.9E-07 43.7 7.9 54 751-805 4-57 (73)
215 PF13371 TPR_9: Tetratricopept 96.2 0.027 5.8E-07 43.8 7.8 56 715-771 3-58 (73)
216 PF04840 Vps16_C: Vps16, C-ter 96.2 1.8 3.9E-05 44.7 30.5 110 639-768 179-288 (319)
217 COG3898 Uncharacterized membra 96.2 1.7 3.8E-05 44.4 32.8 219 473-701 165-392 (531)
218 PF03704 BTAD: Bacterial trans 96.2 0.15 3.3E-06 46.1 13.9 56 747-803 67-122 (146)
219 PF13424 TPR_12: Tetratricopep 96.1 0.024 5.2E-07 44.8 7.2 63 743-805 6-74 (78)
220 PRK15331 chaperone protein Sic 96.1 0.078 1.7E-06 47.6 10.8 88 192-280 46-133 (165)
221 PF13281 DUF4071: Domain of un 96.0 1.4 3.1E-05 45.9 20.9 28 744-771 307-334 (374)
222 PF03704 BTAD: Bacterial trans 96.0 0.16 3.4E-06 46.0 12.9 69 255-324 65-138 (146)
223 KOG2114 Vacuolar assembly/sort 96.0 2.7 5.8E-05 47.5 23.6 143 225-384 375-517 (933)
224 KOG1258 mRNA processing protei 95.9 3.4 7.4E-05 45.0 36.5 187 601-791 296-489 (577)
225 PRK11906 transcriptional regul 95.9 0.38 8.1E-06 50.9 16.1 145 652-802 273-432 (458)
226 COG0457 NrfG FOG: TPR repeat [ 95.8 2.1 4.6E-05 41.8 30.1 194 606-805 63-264 (291)
227 KOG1920 IkappaB kinase complex 95.8 2.8 6E-05 49.3 23.6 79 471-558 974-1052(1265)
228 PF13424 TPR_12: Tetratricopep 95.7 0.028 6.1E-07 44.4 6.0 63 708-770 6-74 (78)
229 PF13281 DUF4071: Domain of un 95.7 1.8 4E-05 45.1 20.3 31 776-806 304-334 (374)
230 KOG1258 mRNA processing protei 95.6 4.4 9.5E-05 44.2 37.2 186 566-757 296-490 (577)
231 KOG0543 FKBP-type peptidyl-pro 95.5 0.21 4.6E-06 51.3 12.2 95 708-805 258-354 (397)
232 PLN03098 LPA1 LOW PSII ACCUMUL 95.4 0.068 1.5E-06 56.2 9.0 100 705-810 73-178 (453)
233 PLN03098 LPA1 LOW PSII ACCUMUL 95.4 0.15 3.2E-06 53.7 11.3 66 669-736 72-141 (453)
234 KOG2610 Uncharacterized conser 95.3 0.38 8.2E-06 47.8 12.7 154 614-769 115-274 (491)
235 KOG2280 Vacuolar assembly/sort 95.2 7 0.00015 43.8 34.9 111 638-767 685-795 (829)
236 COG3118 Thioredoxin domain-con 95.1 1.9 4.1E-05 42.7 17.0 143 226-371 142-286 (304)
237 KOG4555 TPR repeat-containing 95.0 0.48 1E-05 40.2 10.8 91 227-317 52-145 (175)
238 COG3118 Thioredoxin domain-con 95.0 3.3 7.1E-05 41.1 18.2 148 646-796 143-291 (304)
239 COG1729 Uncharacterized protei 95.0 0.43 9.3E-06 46.7 12.2 87 195-281 153-244 (262)
240 COG0457 NrfG FOG: TPR repeat [ 95.0 3.9 8.5E-05 39.8 32.0 221 547-771 38-265 (291)
241 PF10300 DUF3808: Protein of u 94.8 1 2.2E-05 49.7 16.2 118 685-805 246-375 (468)
242 KOG4555 TPR repeat-containing 94.7 0.51 1.1E-05 40.1 10.3 91 681-772 52-145 (175)
243 PF12921 ATP13: Mitochondrial 94.6 0.46 1E-05 41.3 10.4 83 706-788 1-99 (126)
244 smart00299 CLH Clathrin heavy 94.5 2 4.4E-05 38.4 15.1 84 257-348 12-95 (140)
245 KOG1585 Protein required for f 94.5 3.7 8.1E-05 39.3 16.5 82 329-420 38-119 (308)
246 PF09205 DUF1955: Domain of un 94.4 2.9 6.2E-05 35.9 15.0 138 262-424 12-152 (161)
247 KOG1585 Protein required for f 94.4 3.1 6.7E-05 39.9 15.8 25 604-628 93-117 (308)
248 PRK11906 transcriptional regul 94.4 2.8 6.1E-05 44.6 17.3 148 617-770 273-435 (458)
249 KOG3941 Intermediate in Toll s 94.4 0.25 5.3E-06 47.9 8.8 105 249-372 64-173 (406)
250 PF08631 SPO22: Meiosis protei 94.3 6.8 0.00015 39.8 25.5 62 359-421 86-150 (278)
251 KOG1550 Extracellular protein 94.3 12 0.00026 42.4 26.5 179 617-806 343-538 (552)
252 PF13512 TPR_18: Tetratricopep 94.2 1.3 2.8E-05 39.0 12.3 79 222-300 14-95 (142)
253 KOG1920 IkappaB kinase complex 94.1 11 0.00023 44.8 22.2 28 498-525 791-820 (1265)
254 KOG0543 FKBP-type peptidyl-pro 94.0 0.86 1.9E-05 47.1 12.4 96 673-770 258-354 (397)
255 smart00299 CLH Clathrin heavy 94.0 3.4 7.4E-05 36.9 15.4 43 607-650 12-54 (140)
256 PF12921 ATP13: Mitochondrial 93.9 1 2.3E-05 39.1 11.2 48 668-715 48-96 (126)
257 PF09205 DUF1955: Domain of un 93.9 3.2 6.9E-05 35.6 13.3 67 742-809 86-152 (161)
258 COG4105 ComL DNA uptake lipopr 93.9 6.9 0.00015 38.2 20.2 180 218-418 35-230 (254)
259 KOG2610 Uncharacterized conser 93.9 1.3 2.8E-05 44.2 12.8 155 578-734 114-274 (491)
260 PF10300 DUF3808: Protein of u 93.8 13 0.00028 41.1 23.4 118 615-735 246-375 (468)
261 PF08631 SPO22: Meiosis protei 93.8 8.6 0.00019 39.1 26.2 17 787-803 256-272 (278)
262 COG1729 Uncharacterized protei 93.8 1 2.2E-05 44.1 11.9 96 220-316 144-244 (262)
263 COG4649 Uncharacterized protei 93.8 5 0.00011 36.3 15.7 129 683-811 69-201 (221)
264 COG4105 ComL DNA uptake lipopr 93.7 7.3 0.00016 38.0 21.2 73 506-578 43-117 (254)
265 PF04053 Coatomer_WDAD: Coatom 93.6 1.7 3.6E-05 47.2 14.6 131 637-800 295-425 (443)
266 PF04184 ST7: ST7 protein; In 93.5 4.9 0.00011 42.9 17.0 59 677-735 264-323 (539)
267 COG3629 DnrI DNA-binding trans 93.2 1 2.2E-05 44.9 11.2 79 707-786 153-236 (280)
268 PF04053 Coatomer_WDAD: Coatom 93.2 1.3 2.9E-05 47.9 12.9 101 471-592 327-427 (443)
269 PF04184 ST7: ST7 protein; In 93.0 7.1 0.00015 41.8 17.2 78 706-784 258-338 (539)
270 KOG1550 Extracellular protein 92.9 7.3 0.00016 44.1 19.0 45 583-630 228-277 (552)
271 KOG3941 Intermediate in Toll s 92.4 0.96 2.1E-05 44.0 9.3 71 652-722 87-173 (406)
272 KOG1941 Acetylcholine receptor 92.3 5.6 0.00012 40.4 14.6 229 542-770 16-274 (518)
273 KOG2062 26S proteasome regulat 92.1 24 0.00053 39.6 37.1 255 542-805 367-634 (929)
274 PF13428 TPR_14: Tetratricopep 91.7 0.58 1.3E-05 31.8 5.3 26 745-770 4-29 (44)
275 PF13428 TPR_14: Tetratricopep 91.6 0.46 1E-05 32.3 4.7 36 221-256 4-39 (44)
276 PF07035 Mic1: Colon cancer-as 91.1 12 0.00026 34.3 14.5 32 378-409 15-46 (167)
277 COG4785 NlpI Lipoprotein NlpI, 91.1 14 0.0003 34.9 17.3 28 778-805 238-265 (297)
278 PF13512 TPR_18: Tetratricopep 90.9 7.6 0.00016 34.3 12.5 54 369-422 22-77 (142)
279 COG4785 NlpI Lipoprotein NlpI, 90.5 16 0.00034 34.6 16.3 158 218-386 99-266 (297)
280 COG2909 MalT ATP-dependent tra 90.5 40 0.00086 39.1 31.4 52 614-665 470-525 (894)
281 PF13176 TPR_7: Tetratricopept 90.4 0.54 1.2E-05 30.3 4.0 27 779-805 1-27 (36)
282 COG3629 DnrI DNA-binding trans 90.3 3 6.5E-05 41.6 10.7 78 672-750 153-235 (280)
283 PF10345 Cohesin_load: Cohesin 90.3 40 0.00087 38.8 42.0 182 202-384 40-252 (608)
284 PF10602 RPN7: 26S proteasome 90.2 3.2 6.9E-05 38.8 10.4 96 708-805 37-141 (177)
285 PF04097 Nic96: Nup93/Nic96; 89.9 32 0.00069 39.5 20.2 16 332-347 268-283 (613)
286 KOG2066 Vacuolar assembly/sort 89.7 42 0.00091 38.2 30.3 102 294-404 363-467 (846)
287 PF13176 TPR_7: Tetratricopept 89.6 0.76 1.7E-05 29.6 4.2 27 744-770 1-27 (36)
288 PF10602 RPN7: 26S proteasome 89.3 3.9 8.5E-05 38.1 10.3 60 289-348 38-99 (177)
289 PF09613 HrpB1_HrpK: Bacterial 89.3 12 0.00027 33.7 12.7 108 298-412 21-129 (160)
290 PF13170 DUF4003: Protein of u 89.1 29 0.00063 35.5 20.4 23 620-642 200-222 (297)
291 KOG2396 HAT (Half-A-TPR) repea 88.7 38 0.00083 36.4 39.9 238 553-805 303-558 (568)
292 PF00515 TPR_1: Tetratricopept 88.4 1 2.2E-05 28.4 4.1 27 744-770 3-29 (34)
293 PF00515 TPR_1: Tetratricopept 88.3 1.1 2.4E-05 28.2 4.3 28 778-805 2-29 (34)
294 COG4649 Uncharacterized protei 88.3 20 0.00043 32.7 15.4 124 473-596 69-196 (221)
295 KOG1941 Acetylcholine receptor 88.3 33 0.00071 35.2 20.2 225 475-699 19-273 (518)
296 KOG2066 Vacuolar assembly/sort 88.3 52 0.0011 37.5 28.3 102 225-334 363-467 (846)
297 PF13431 TPR_17: Tetratricopep 88.2 0.61 1.3E-05 29.6 2.8 21 776-796 12-32 (34)
298 PF07035 Mic1: Colon cancer-as 87.9 21 0.00046 32.6 15.3 101 273-383 15-115 (167)
299 PF07719 TPR_2: Tetratricopept 87.6 1.3 2.8E-05 27.7 4.3 26 745-770 4-29 (34)
300 PF07719 TPR_2: Tetratricopept 87.4 1.2 2.7E-05 27.9 4.1 28 778-805 2-29 (34)
301 COG1747 Uncharacterized N-term 87.4 46 0.001 35.9 25.5 92 533-629 67-158 (711)
302 PF04097 Nic96: Nup93/Nic96; 87.0 64 0.0014 37.1 22.2 47 322-370 112-158 (613)
303 COG0790 FOG: TPR repeat, SEL1 86.8 40 0.00086 34.5 23.3 128 687-821 128-281 (292)
304 PF13170 DUF4003: Protein of u 86.8 40 0.00086 34.5 20.8 25 760-784 200-224 (297)
305 PF13431 TPR_17: Tetratricopep 86.5 0.87 1.9E-05 28.9 2.8 23 249-271 10-32 (34)
306 PF09613 HrpB1_HrpK: Bacterial 86.4 22 0.00049 32.1 12.6 108 683-797 21-129 (160)
307 KOG4648 Uncharacterized conser 85.9 3.2 6.9E-05 41.7 7.6 94 678-776 103-197 (536)
308 PRK09687 putative lyase; Provi 85.9 43 0.00093 34.0 28.0 136 671-822 141-277 (280)
309 KOG4234 TPR repeat-containing 85.3 10 0.00022 35.3 10.0 89 681-771 104-197 (271)
310 COG2909 MalT ATP-dependent tra 85.1 83 0.0018 36.7 29.0 226 507-732 425-684 (894)
311 COG2976 Uncharacterized protei 84.6 35 0.00075 31.9 14.4 87 680-771 97-188 (207)
312 COG2976 Uncharacterized protei 84.4 36 0.00078 31.8 14.8 128 673-810 55-192 (207)
313 KOG4570 Uncharacterized conser 84.3 13 0.00029 37.1 10.9 49 652-700 115-163 (418)
314 KOG0276 Vesicle coat complex C 84.3 14 0.00031 40.4 11.9 44 334-383 649-692 (794)
315 KOG4648 Uncharacterized conser 84.3 5.2 0.00011 40.2 8.3 96 643-742 103-198 (536)
316 PF06552 TOM20_plant: Plant sp 84.0 5.4 0.00012 36.6 7.7 111 688-809 7-139 (186)
317 PF10345 Cohesin_load: Cohesin 84.0 88 0.0019 36.1 43.1 194 217-420 29-253 (608)
318 PF02284 COX5A: Cytochrome c o 83.4 11 0.00025 30.8 8.3 58 201-260 28-87 (108)
319 KOG4234 TPR repeat-containing 83.2 13 0.00029 34.5 9.8 89 715-806 103-197 (271)
320 PF02259 FAT: FAT domain; Int 83.1 66 0.0014 33.9 22.1 53 539-595 5-57 (352)
321 COG1747 Uncharacterized N-term 82.9 75 0.0016 34.4 25.3 180 494-681 63-248 (711)
322 TIGR02561 HrpB1_HrpK type III 82.0 31 0.00066 30.7 11.2 51 684-736 22-73 (153)
323 KOG2396 HAT (Half-A-TPR) repea 81.7 83 0.0018 34.1 41.3 79 237-316 90-169 (568)
324 PF06552 TOM20_plant: Plant sp 80.8 25 0.00054 32.4 10.6 112 653-775 7-140 (186)
325 cd00923 Cyt_c_Oxidase_Va Cytoc 80.8 12 0.00025 30.3 7.4 42 728-769 28-69 (103)
326 cd00923 Cyt_c_Oxidase_Va Cytoc 80.4 9.2 0.0002 30.9 6.8 60 201-260 25-84 (103)
327 PF13374 TPR_10: Tetratricopep 80.3 3.8 8.2E-05 27.0 4.3 28 778-805 3-30 (42)
328 PF07575 Nucleopor_Nup85: Nup8 79.8 83 0.0018 35.9 17.3 149 657-823 390-541 (566)
329 PF11207 DUF2989: Protein of u 79.7 16 0.00035 34.4 9.3 77 719-797 119-198 (203)
330 PF13181 TPR_8: Tetratricopept 79.5 3 6.4E-05 26.1 3.3 27 744-770 3-29 (34)
331 PF13374 TPR_10: Tetratricopep 79.5 4.6 9.9E-05 26.6 4.5 28 743-770 3-30 (42)
332 KOG0276 Vesicle coat complex C 78.6 28 0.0006 38.3 11.7 45 369-419 649-693 (794)
333 PF13181 TPR_8: Tetratricopept 78.4 3.5 7.5E-05 25.8 3.4 28 778-805 2-29 (34)
334 PF02284 COX5A: Cytochrome c o 77.6 11 0.00024 30.8 6.5 44 727-770 30-73 (108)
335 KOG4570 Uncharacterized conser 77.5 8.7 0.00019 38.3 7.2 102 213-316 59-164 (418)
336 PF02259 FAT: FAT domain; Int 77.4 1E+02 0.0022 32.5 25.4 62 604-665 148-212 (352)
337 PF11207 DUF2989: Protein of u 76.2 21 0.00046 33.6 9.0 79 682-762 117-198 (203)
338 PRK09687 putative lyase; Provi 76.0 95 0.0021 31.6 28.8 201 566-787 67-277 (280)
339 TIGR03504 FimV_Cterm FimV C-te 75.2 5.7 0.00012 26.9 3.8 23 748-770 5-27 (44)
340 COG5159 RPN6 26S proteasome re 74.8 94 0.002 30.9 16.1 52 538-589 9-67 (421)
341 KOG0687 26S proteasome regulat 74.6 1E+02 0.0023 31.3 14.7 93 640-734 107-208 (393)
342 COG3947 Response regulator con 73.8 1E+02 0.0022 30.9 16.8 68 711-779 283-355 (361)
343 PF00637 Clathrin: Region in C 73.7 1.6 3.5E-05 39.2 1.2 54 258-311 13-66 (143)
344 COG0790 FOG: TPR repeat, SEL1 73.6 1.1E+02 0.0024 31.2 22.6 83 689-778 172-273 (292)
345 TIGR02508 type_III_yscG type I 73.4 21 0.00046 29.1 7.0 51 261-317 48-98 (115)
346 KOG0687 26S proteasome regulat 73.3 1.1E+02 0.0024 31.1 14.3 96 708-805 105-209 (393)
347 PF00637 Clathrin: Region in C 73.0 1.8 3.8E-05 38.9 1.3 83 293-382 13-95 (143)
348 TIGR02561 HrpB1_HrpK type III 72.9 59 0.0013 29.0 10.4 17 229-245 55-71 (153)
349 PHA02875 ankyrin repeat protei 72.2 1.5E+02 0.0033 32.1 16.9 11 331-341 74-84 (413)
350 COG4455 ImpE Protein of avirul 72.0 21 0.00046 33.9 7.8 76 221-296 4-81 (273)
351 PF09986 DUF2225: Uncharacteri 71.2 35 0.00075 33.0 9.7 64 744-807 120-195 (214)
352 TIGR02508 type_III_yscG type I 71.0 32 0.0007 28.1 7.5 49 752-806 49-97 (115)
353 KOG2471 TPR repeat-containing 70.7 65 0.0014 34.6 11.8 41 334-374 29-69 (696)
354 PF13174 TPR_6: Tetratricopept 70.7 7.3 0.00016 23.9 3.4 24 258-281 6-29 (33)
355 KOG1464 COP9 signalosome, subu 70.5 1.1E+02 0.0025 30.0 23.5 50 475-524 40-92 (440)
356 COG4455 ImpE Protein of avirul 70.4 28 0.00062 33.0 8.3 77 674-751 3-81 (273)
357 KOG4642 Chaperone-dependent E3 69.4 77 0.0017 30.7 11.0 80 650-733 23-104 (284)
358 COG3947 Response regulator con 69.1 1.3E+02 0.0028 30.2 17.3 56 642-698 284-339 (361)
359 PRK11619 lytic murein transgly 67.6 2.4E+02 0.0052 32.7 38.4 334 253-630 35-374 (644)
360 PRK11619 lytic murein transgly 67.2 2.5E+02 0.0053 32.6 39.9 423 287-766 34-463 (644)
361 PF07721 TPR_4: Tetratricopept 66.9 7.1 0.00015 22.8 2.5 22 780-801 4-25 (26)
362 KOG2063 Vacuolar assembly/sort 66.4 2.8E+02 0.0061 33.0 18.0 38 471-508 600-637 (877)
363 KOG2063 Vacuolar assembly/sort 65.9 2.9E+02 0.0063 33.0 19.2 39 401-439 600-638 (877)
364 KOG1586 Protein required for f 65.9 1.3E+02 0.0029 29.1 22.5 23 472-494 164-186 (288)
365 PF13174 TPR_6: Tetratricopept 65.1 10 0.00023 23.2 3.3 23 748-770 6-28 (33)
366 PF04190 DUF410: Protein of un 64.7 1.6E+02 0.0034 29.5 19.8 25 566-590 89-113 (260)
367 COG5159 RPN6 26S proteasome re 63.8 1.6E+02 0.0035 29.3 18.3 52 327-378 8-66 (421)
368 KOG1308 Hsp70-interacting prot 63.5 4.2 9.1E-05 41.1 1.7 119 683-806 125-244 (377)
369 TIGR03504 FimV_Cterm FimV C-te 62.5 16 0.00035 24.8 3.8 23 363-385 5-27 (44)
370 KOG4507 Uncharacterized conser 62.3 50 0.0011 36.2 9.3 104 473-578 618-721 (886)
371 PF10579 Rapsyn_N: Rapsyn N-te 62.0 20 0.00043 27.9 4.7 46 754-799 18-65 (80)
372 PF07163 Pex26: Pex26 protein; 61.6 89 0.0019 31.1 10.1 87 574-660 90-181 (309)
373 KOG0376 Serine-threonine phosp 59.0 16 0.00034 39.0 5.0 105 679-789 11-117 (476)
374 PF14853 Fis1_TPR_C: Fis1 C-te 58.7 39 0.00084 24.1 5.4 30 747-778 6-35 (53)
375 KOG2297 Predicted translation 58.5 2.1E+02 0.0046 28.9 19.8 18 464-481 323-340 (412)
376 KOG4642 Chaperone-dependent E3 58.3 88 0.0019 30.4 9.2 119 681-803 19-143 (284)
377 PF04910 Tcf25: Transcriptiona 58.2 2.5E+02 0.0055 29.7 18.3 98 218-315 40-167 (360)
378 KOG1586 Protein required for f 58.2 1.9E+02 0.004 28.2 20.2 145 247-421 68-224 (288)
379 KOG4077 Cytochrome c oxidase, 58.1 64 0.0014 27.7 7.3 44 728-771 70-113 (149)
380 smart00028 TPR Tetratricopepti 57.4 21 0.00046 20.8 3.9 24 746-769 5-28 (34)
381 KOG4507 Uncharacterized conser 56.5 48 0.001 36.4 8.0 152 248-403 567-721 (886)
382 KOG0890 Protein kinase of the 56.2 6.3E+02 0.014 33.7 35.7 119 292-419 1388-1510(2382)
383 PF09477 Type_III_YscG: Bacter 55.8 1.2E+02 0.0025 25.4 8.2 79 198-282 21-99 (116)
384 PF13929 mRNA_stabil: mRNA sta 54.9 2.4E+02 0.0052 28.5 15.7 114 653-766 144-262 (292)
385 PF07575 Nucleopor_Nup85: Nup8 54.9 3.7E+02 0.0081 30.7 21.3 44 447-490 390-433 (566)
386 PF04190 DUF410: Protein of un 54.1 2.4E+02 0.0052 28.3 18.6 81 496-595 89-169 (260)
387 KOG4077 Cytochrome c oxidase, 53.3 82 0.0018 27.1 7.2 63 760-823 67-129 (149)
388 PHA03100 ankyrin repeat protei 53.2 3.4E+02 0.0075 30.0 15.2 15 204-218 49-63 (480)
389 KOG1464 COP9 signalosome, subu 52.5 2.5E+02 0.0053 27.8 23.3 69 422-490 21-93 (440)
390 PF08424 NRDE-2: NRDE-2, neces 52.2 3E+02 0.0064 28.7 18.6 122 688-811 47-189 (321)
391 PF07163 Pex26: Pex26 protein; 52.2 1.4E+02 0.003 29.8 9.7 87 504-590 90-181 (309)
392 PF14853 Fis1_TPR_C: Fis1 C-te 50.6 69 0.0015 22.8 5.6 27 783-811 7-33 (53)
393 PHA02875 ankyrin repeat protei 50.2 3.6E+02 0.0078 29.1 18.6 32 206-237 18-51 (413)
394 PRK15180 Vi polysaccharide bio 50.1 3.6E+02 0.0079 29.1 33.2 18 789-806 788-805 (831)
395 PF09477 Type_III_YscG: Bacter 49.5 1.6E+02 0.0034 24.7 10.4 78 233-317 21-99 (116)
396 PF14689 SPOB_a: Sensor_kinase 49.3 37 0.00081 25.1 4.4 22 363-384 29-50 (62)
397 PF11846 DUF3366: Domain of un 49.1 49 0.0011 31.4 6.4 55 93-147 120-174 (193)
398 PF11663 Toxin_YhaV: Toxin wit 48.9 18 0.00038 31.4 2.9 28 791-820 109-136 (140)
399 PF00244 14-3-3: 14-3-3 protei 47.9 2.1E+02 0.0045 28.2 10.7 18 753-770 180-197 (236)
400 PF13929 mRNA_stabil: mRNA sta 47.8 3.1E+02 0.0068 27.7 15.6 123 290-415 134-261 (292)
401 PF10579 Rapsyn_N: Rapsyn N-te 47.8 73 0.0016 24.9 5.7 49 719-767 18-68 (80)
402 PF12862 Apc5: Anaphase-promot 47.5 97 0.0021 25.2 7.1 23 783-805 47-69 (94)
403 PF13934 ELYS: Nuclear pore co 47.1 2.7E+02 0.0059 27.2 11.3 105 183-298 79-183 (226)
404 PF10366 Vps39_1: Vacuolar sor 46.9 1.8E+02 0.0038 24.6 9.2 26 430-455 42-67 (108)
405 cd00280 TRFH Telomeric Repeat 46.3 2.5E+02 0.0055 26.2 13.9 42 293-337 117-158 (200)
406 PF08311 Mad3_BUB1_I: Mad3/BUB 46.1 1.4E+02 0.003 26.0 8.2 43 760-802 81-124 (126)
407 PF09670 Cas_Cas02710: CRISPR- 45.8 1.5E+02 0.0033 31.7 10.1 54 331-385 140-197 (379)
408 PF10366 Vps39_1: Vacuolar sor 45.0 1.6E+02 0.0034 24.9 8.0 26 360-385 42-67 (108)
409 KOG2297 Predicted translation 44.8 3.5E+02 0.0076 27.4 20.5 212 180-447 111-341 (412)
410 KOG2908 26S proteasome regulat 44.6 2.1E+02 0.0045 29.5 9.9 76 643-718 81-167 (380)
411 COG5187 RPN7 26S proteasome re 44.3 3.5E+02 0.0075 27.2 13.0 98 496-595 114-220 (412)
412 KOG3364 Membrane protein invol 44.0 2.3E+02 0.0049 25.0 10.1 66 704-770 29-99 (149)
413 KOG2034 Vacuolar sorting prote 43.0 6.3E+02 0.014 29.9 25.6 129 506-653 513-644 (911)
414 KOG0376 Serine-threonine phosp 43.0 42 0.0009 36.0 5.1 105 644-754 11-117 (476)
415 PF09986 DUF2225: Uncharacteri 42.3 3.3E+02 0.0071 26.4 11.1 25 747-771 170-194 (214)
416 PRK13342 recombination factor 42.0 4.9E+02 0.011 28.3 19.2 43 535-577 230-275 (413)
417 PF14689 SPOB_a: Sensor_kinase 42.0 53 0.0011 24.3 4.2 23 782-804 28-50 (62)
418 PRK10941 hypothetical protein; 41.3 2.7E+02 0.0058 28.1 10.4 74 748-823 187-262 (269)
419 KOG0403 Neoplastic transformat 41.2 4.9E+02 0.011 28.0 27.9 26 360-385 217-242 (645)
420 KOG1308 Hsp70-interacting prot 41.2 36 0.00078 34.8 4.1 118 648-770 125-243 (377)
421 PRK13800 putative oxidoreducta 40.5 7.7E+02 0.017 30.1 28.3 261 530-822 633-894 (897)
422 PF09670 Cas_Cas02710: CRISPR- 40.4 2.7E+02 0.0059 29.8 11.0 55 646-701 140-198 (379)
423 PF11846 DUF3366: Domain of un 40.4 1.2E+02 0.0026 28.7 7.7 32 774-805 141-172 (193)
424 COG2178 Predicted RNA-binding 40.1 3.1E+02 0.0068 25.8 9.5 17 369-385 133-149 (204)
425 KOG0890 Protein kinase of the 40.0 1.1E+03 0.024 31.8 34.1 151 327-486 1388-1542(2382)
426 smart00386 HAT HAT (Half-A-TPR 39.1 51 0.0011 19.7 3.4 12 234-245 3-14 (33)
427 PF11663 Toxin_YhaV: Toxin wit 39.0 32 0.00069 29.9 2.9 21 232-252 109-130 (140)
428 PF12862 Apc5: Anaphase-promot 38.8 2.1E+02 0.0046 23.2 8.1 53 193-245 8-68 (94)
429 PF08424 NRDE-2: NRDE-2, neces 38.4 4.8E+02 0.01 27.1 18.3 117 620-738 49-185 (321)
430 PRK14956 DNA polymerase III su 38.0 4.8E+02 0.01 28.8 12.3 37 741-777 247-283 (484)
431 PF14669 Asp_Glu_race_2: Putat 37.7 3.5E+02 0.0077 25.4 16.0 25 502-526 137-161 (233)
432 PF04910 Tcf25: Transcriptiona 37.0 5.4E+02 0.012 27.3 17.3 135 95-244 24-165 (360)
433 KOG0991 Replication factor C, 36.5 4.2E+02 0.009 25.9 13.1 91 693-787 180-282 (333)
434 PHA03100 ankyrin repeat protei 36.0 6.4E+02 0.014 27.9 15.2 17 225-241 39-55 (480)
435 PF11848 DUF3368: Domain of un 36.0 1.1E+02 0.0025 21.1 4.9 32 263-294 13-44 (48)
436 PRK15180 Vi polysaccharide bio 35.7 6.1E+02 0.013 27.6 32.5 121 229-351 300-420 (831)
437 PF11848 DUF3368: Domain of un 35.5 1.3E+02 0.0028 20.9 5.1 28 369-396 14-41 (48)
438 COG5187 RPN7 26S proteasome re 35.3 4.8E+02 0.01 26.3 13.9 97 636-734 114-219 (412)
439 KOG1114 Tripeptidyl peptidase 35.0 8.4E+02 0.018 29.3 13.6 52 741-792 1230-1282(1304)
440 KOG2908 26S proteasome regulat 34.8 4.3E+02 0.0093 27.4 10.3 77 606-682 79-166 (380)
441 PF11838 ERAP1_C: ERAP1-like C 34.4 5.4E+02 0.012 26.5 17.7 81 338-421 146-230 (324)
442 KOG4521 Nuclear pore complex, 34.1 6.4E+02 0.014 30.9 12.8 79 289-374 985-1071(1480)
443 PF10255 Paf67: RNA polymerase 34.1 1.8E+02 0.0038 31.2 8.1 62 253-314 123-191 (404)
444 PRK10941 hypothetical protein; 34.1 4E+02 0.0087 26.9 10.3 59 222-280 185-243 (269)
445 cd08819 CARD_MDA5_2 Caspase ac 33.8 2.5E+02 0.0054 22.5 7.2 14 546-559 50-63 (88)
446 KOG4521 Nuclear pore complex, 32.9 1E+03 0.022 29.3 15.4 53 640-693 986-1042(1480)
447 COG5108 RPO41 Mitochondrial DN 31.7 1.9E+02 0.0042 32.5 7.9 46 223-268 33-81 (1117)
448 PF11768 DUF3312: Protein of u 31.3 5.1E+02 0.011 28.9 11.0 60 222-281 412-473 (545)
449 COG5108 RPO41 Mitochondrial DN 30.8 3.1E+02 0.0068 31.0 9.3 73 642-717 33-113 (1117)
450 PRK09857 putative transposase; 30.3 3.1E+02 0.0067 28.1 9.0 30 782-811 245-274 (292)
451 PF14561 TPR_20: Tetratricopep 30.2 2.9E+02 0.0064 22.3 8.1 54 739-792 19-73 (90)
452 smart00777 Mad3_BUB1_I Mad3/BU 30.1 3.7E+02 0.008 23.4 9.2 43 759-801 80-123 (125)
453 KOG4279 Serine/threonine prote 30.0 9.3E+02 0.02 28.0 12.9 47 549-595 180-229 (1226)
454 PF14561 TPR_20: Tetratricopep 30.0 3E+02 0.0064 22.2 8.3 33 249-281 19-51 (90)
455 KOG3636 Uncharacterized conser 29.9 7.2E+02 0.016 26.7 12.9 86 702-788 178-271 (669)
456 KOG3364 Membrane protein invol 29.9 3.9E+02 0.0085 23.6 10.2 67 669-736 29-100 (149)
457 KOG2471 TPR repeat-containing 29.6 7.8E+02 0.017 27.0 24.2 107 471-579 249-381 (696)
458 KOG0991 Replication factor C, 29.4 5.5E+02 0.012 25.1 12.7 135 608-752 136-282 (333)
459 PF11817 Foie-gras_1: Foie gra 28.9 2.7E+02 0.0058 27.6 8.3 58 747-804 183-245 (247)
460 cd08819 CARD_MDA5_2 Caspase ac 27.9 3.2E+02 0.007 21.9 7.1 36 369-409 48-83 (88)
461 KOG0403 Neoplastic transformat 27.7 8E+02 0.017 26.5 29.2 60 746-808 513-574 (645)
462 KOG1114 Tripeptidyl peptidase 27.7 1.1E+03 0.025 28.2 15.0 71 688-758 1212-1283(1304)
463 KOG2659 LisH motif-containing 27.7 4.6E+02 0.01 25.4 8.9 21 364-384 71-91 (228)
464 PRK10564 maltose regulon perip 27.6 1.1E+02 0.0025 30.9 5.1 30 745-774 260-289 (303)
465 PRK10564 maltose regulon perip 27.6 1E+02 0.0023 31.1 4.9 28 326-353 261-288 (303)
466 TIGR01228 hutU urocanate hydra 27.4 3.4E+02 0.0073 29.6 8.6 22 787-808 403-424 (545)
467 TIGR02710 CRISPR-associated pr 27.1 7.9E+02 0.017 26.2 11.4 19 334-352 142-160 (380)
468 KOG2582 COP9 signalosome, subu 26.3 7.8E+02 0.017 25.9 15.8 55 683-737 288-346 (422)
469 PF09454 Vps23_core: Vps23 cor 25.9 2.2E+02 0.0047 21.4 5.2 49 495-544 6-54 (65)
470 PRK09857 putative transposase; 25.8 4.8E+02 0.01 26.7 9.5 64 712-776 211-274 (292)
471 PF15297 CKAP2_C: Cytoskeleton 25.0 5.4E+02 0.012 26.8 9.4 63 339-403 120-186 (353)
472 PF03745 DUF309: Domain of unk 25.0 2.2E+02 0.0047 21.1 5.0 14 265-278 12-25 (62)
473 COG4259 Uncharacterized protei 24.7 3.9E+02 0.0084 22.0 6.5 20 748-767 78-97 (121)
474 PF11817 Foie-gras_1: Foie gra 24.5 3E+02 0.0065 27.3 7.7 57 677-733 183-244 (247)
475 PF05944 Phage_term_smal: Phag 23.7 5.1E+02 0.011 22.8 10.2 32 741-773 48-79 (132)
476 COG0735 Fur Fe2+/Zn2+ uptake r 23.5 3.4E+02 0.0074 24.3 7.0 32 398-429 26-57 (145)
477 PRK13342 recombination factor 23.4 9.7E+02 0.021 26.0 19.8 23 651-673 244-266 (413)
478 cd00280 TRFH Telomeric Repeat 23.4 4.8E+02 0.01 24.5 7.7 21 715-735 119-139 (200)
479 PF14669 Asp_Glu_race_2: Putat 23.0 6.5E+02 0.014 23.8 14.9 23 398-420 138-160 (233)
480 KOG0551 Hsp90 co-chaperone CNS 22.9 5.2E+02 0.011 26.8 8.6 95 673-769 82-180 (390)
481 COG0735 Fur Fe2+/Zn2+ uptake r 22.8 4.6E+02 0.01 23.4 7.7 58 522-580 11-68 (145)
482 COG2178 Predicted RNA-binding 22.7 6.6E+02 0.014 23.8 10.2 19 403-421 132-150 (204)
483 PRK13800 putative oxidoreducta 22.5 1.5E+03 0.032 27.7 30.2 247 495-770 633-880 (897)
484 KOG2034 Vacuolar sorting prote 22.2 1.4E+03 0.03 27.3 30.5 50 226-280 366-417 (911)
485 KOG4567 GTPase-activating prot 21.4 8.9E+02 0.019 24.8 10.2 43 693-735 264-306 (370)
486 PF07720 TPR_3: Tetratricopept 21.4 2.1E+02 0.0046 18.4 3.8 18 747-764 6-23 (36)
487 PF06957 COPI_C: Coatomer (COP 21.1 6.8E+02 0.015 27.1 9.6 22 224-245 124-145 (422)
488 PRK08691 DNA polymerase III su 20.9 1.3E+03 0.028 27.1 12.3 84 688-774 180-277 (709)
489 PRK08691 DNA polymerase III su 20.7 1.1E+03 0.025 27.5 11.8 86 653-741 180-279 (709)
490 KOG0128 RNA-binding protein SA 20.7 1.4E+03 0.031 26.9 37.8 96 217-314 112-217 (881)
491 TIGR02710 CRISPR-associated pr 20.6 1E+03 0.023 25.3 11.6 53 365-417 138-196 (380)
492 PHA02989 ankyrin repeat protei 20.6 1.2E+03 0.026 26.0 15.0 15 274-288 18-32 (494)
493 PF04762 IKI3: IKI3 family; I 20.2 1.6E+03 0.036 27.4 17.3 51 615-666 791-843 (928)
494 KOG4279 Serine/threonine prote 20.2 1.4E+03 0.031 26.6 12.6 17 510-526 379-395 (1226)
495 PF15297 CKAP2_C: Cytoskeleton 20.0 9.2E+02 0.02 25.2 9.8 63 723-787 119-185 (353)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.6e-87 Score=791.98 Aligned_cols=680 Identities=19% Similarity=0.270 Sum_probs=638.8
Q ss_pred CCChhhHHHHHHhhhcCCChHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHHcCCCCccccCCCc
Q 003295 78 NLSPQEFDTLFFSIRSNVNPKTALKFFYFASQSCNFRFTVRSYCLLIRLLLFSNLLSPARLLLIRLIDGKMPVLYASNPS 157 (833)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~a~~ff~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 157 (833)
..+++....++..+...+.+..|+.+|..+.. .++.++..+|..+++.+.+.+.+..|..++.++++.+.
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------- 117 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQE-LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHP--------- 117 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHh-cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCC---------
Confidence 33445556666667777889999999998865 36778889999999999999999999999999887651
Q ss_pred chHHHHHHHHhhhhcccCCcchhhhHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 003295 158 IRHIEIASQMVDLNVTSEPALGVQIADLLVHVYCTQFKNLGFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKG 237 (833)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A 237 (833)
.......+.|+..|+ +.|+++.|.++|+.|.+ ||+++||.+|.+|++.|++++|
T Consensus 118 -------------------~~~~~~~n~li~~~~---~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A 171 (857)
T PLN03077 118 -------------------SLGVRLGNAMLSMFV---RFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEA 171 (857)
T ss_pred -------------------CCCchHHHHHHHHHH---hCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHH
Confidence 123345788899888 78999999999999964 6899999999999999999999
Q ss_pred HHHHHHhh-cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003295 238 IEVFETMC-RGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLR 316 (833)
Q Consensus 238 ~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (833)
+.+|++|. .|+.||.+||+.++++|++.++++.+.+++..|.+.|+.||+.+||+||.+|++.|++++|.++|++|.
T Consensus 172 ~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-- 249 (857)
T PLN03077 172 LCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP-- 249 (857)
T ss_pred HHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC--
Confidence 99999999 799999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHH
Q 003295 317 EVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFN 396 (833)
Q Consensus 317 ~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 396 (833)
.||.++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.++++.|+++.|.+++..|.+.|+.||..+|+
T Consensus 250 --~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n 327 (857)
T PLN03077 250 --RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN 327 (857)
T ss_pred --CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHH
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 003295 397 SLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNG 476 (833)
Q Consensus 397 ~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 476 (833)
+||.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|...|+.||..+|+.++.+|++.|
T Consensus 328 ~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g 403 (857)
T PLN03077 328 SLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG 403 (857)
T ss_pred HHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccc
Confidence 99999999999999999999996 46899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 003295 477 KQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKE 556 (833)
Q Consensus 477 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 556 (833)
++++|.++++.+.+.|+.++..+||.|+++|++.|++++|.++|++|.+. |..+|+++|.+|++.|+.++|+.+|+
T Consensus 404 ~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----d~vs~~~mi~~~~~~g~~~eA~~lf~ 479 (857)
T PLN03077 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFR 479 (857)
T ss_pred hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC----CeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999764 88999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC
Q 003295 557 DMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELN 636 (833)
Q Consensus 557 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 636 (833)
+|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+.|+.+|..++++|+++|++.|++++|.++|+++ .+|
T Consensus 480 ~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d 553 (857)
T PLN03077 480 QMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKD 553 (857)
T ss_pred HHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCC
Confidence 9986 5999999999999999999999999999999999999999999999999999999999999999987 569
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCChhHHHHHHH
Q 003295 637 PVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMR-KEGLLPNVACYTALIG 715 (833)
Q Consensus 637 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~li~ 715 (833)
..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|++|. +.|+.|+..+|+++++
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 5699999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCCHH
Q 003295 716 GYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISP-DSITYNVFMDGHCKGGNVE 794 (833)
Q Consensus 716 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~ 794 (833)
+|++.|++++|.+++++|. +.||..+|++|+.+|..+|+.+.|....+++.+ +.| +...|..|.+.|...|+|+
T Consensus 634 ~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~ 708 (857)
T PLN03077 634 LLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWD 708 (857)
T ss_pred HHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChH
Confidence 9999999999999999985 799999999999999999999999999999988 456 5677888899999999999
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHH
Q 003295 795 EAFKVCDRMLSEGLSLDE-ITYT 816 (833)
Q Consensus 795 ~A~~~~~~m~~~g~~p~~-~~~~ 816 (833)
+|.++.+.|.+.|++++. .+|.
T Consensus 709 ~a~~vr~~M~~~g~~k~~g~s~i 731 (857)
T PLN03077 709 EVARVRKTMRENGLTVDPGCSWV 731 (857)
T ss_pred HHHHHHHHHHHcCCCCCCCccEE
Confidence 999999999999999884 3443
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.8e-81 Score=741.74 Aligned_cols=661 Identities=18% Similarity=0.233 Sum_probs=625.2
Q ss_pred CCCHHHHHHHHHHHHhCCCchhHHHHHHHHHcCCCCccccCCCcchHHHHHHHHhhhhcccCCcchhhhHHHHHHHHHHh
Q 003295 114 RFTVRSYCLLIRLLLFSNLLSPARLLLIRLIDGKMPVLYASNPSIRHIEIASQMVDLNVTSEPALGVQIADLLVHVYCTQ 193 (833)
Q Consensus 114 ~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (833)
.++..+++.+++.|++.|.+.+|..++.+|.+.+.+ +....+..+++.+.
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~----------------------------~~~~~~~~ll~~~~-- 97 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVP----------------------------VDEDAYVALFRLCE-- 97 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC----------------------------CChhHHHHHHHHHh--
Confidence 457788999999999999999999999999876521 12233555666554
Q ss_pred hhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 003295 194 FKNLGFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIG 273 (833)
Q Consensus 194 ~~~~~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 273 (833)
+.+.+..|.+++..+.+.|..++...+|.|+.+|++.|+++.|+++|++|. +||+++||.+|.+|++.|++++|.+
T Consensus 98 -~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~A~~ 173 (857)
T PLN03077 98 -WKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP---ERDLFSWNVLVGGYAKAGYFDEALC 173 (857)
T ss_pred -hCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC---CCCeeEHHHHHHHHHhCCCHHHHHH
Confidence 457789999999999999999999999999999999999999999999995 5899999999999999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 003295 274 LFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGF 353 (833)
Q Consensus 274 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 353 (833)
+|++|...|+.||.+||++++++|++.++++.+.+++..|.+.|+.||+.+|++||.+|++.|++++|..+|++|.
T Consensus 174 ~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~---- 249 (857)
T PLN03077 174 LYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP---- 249 (857)
T ss_pred HHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHH
Q 003295 354 VPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSV 433 (833)
Q Consensus 354 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~l 433 (833)
.||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.++++.|+++.|.+++..|.+.|+.||..+|+++
T Consensus 250 ~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~L 329 (857)
T PLN03077 250 RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSL 329 (857)
T ss_pred CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003295 434 IKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNL 513 (833)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 513 (833)
+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++
T Consensus 330 i~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~ 405 (857)
T PLN03077 330 IQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL 405 (857)
T ss_pred HHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchH
Confidence 999999999999999999985 4688899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003295 514 KEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEEC 593 (833)
Q Consensus 514 ~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 593 (833)
++|.++++.|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+ +|..+|++++.+|++.|+.++|..+|++|
T Consensus 406 ~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m 481 (857)
T PLN03077 406 DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQM 481 (857)
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999964 58899999999999999999999999999
Q ss_pred hhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 003295 594 KRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSV 673 (833)
Q Consensus 594 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 673 (833)
.. ++.||..||+.++.+|++.|.++.+.+++..+.+.|..+|..++|++|++|++.|++++|.++|+.+ .||..
T Consensus 482 ~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~ 555 (857)
T PLN03077 482 LL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVV 555 (857)
T ss_pred Hh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChh
Confidence 86 5899999999999999999999999999999999999999999999999999999999999999987 57999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHH-hCCCCCCHHHHHHHHHHH
Q 003295 674 TYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMA-SINIHPNKITYTIMIGGY 752 (833)
Q Consensus 674 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~ 752 (833)
+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.++.+|
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 689999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHhhccCCCCccc
Q 003295 753 CKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSLD-EITYTTLIDGWQSSTITNQD 831 (833)
Q Consensus 753 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~~ 831 (833)
++.|++++|.+++++|. +.||..+|.+|+.+|...|+.+.|....+++.+ +.|+ ...|..|.+.|...+.++++
T Consensus 636 ~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a 710 (857)
T PLN03077 636 GRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEV 710 (857)
T ss_pred HhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHH
Confidence 99999999999999983 789999999999999999999999999998887 6777 67777888888887776653
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.2e-72 Score=646.67 Aligned_cols=548 Identities=20% Similarity=0.268 Sum_probs=503.9
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHH
Q 003295 248 VSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGI-APNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYS 326 (833)
Q Consensus 248 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 326 (833)
..++...|..++..|++.|++++|+++|++|.+.|+ .++..+++.++.+|++.|.+++|..+|+.|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 456778899999999999999999999999999986 46788889999999999999999999999874 8999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcC
Q 003295 327 ILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSG 406 (833)
Q Consensus 327 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 406 (833)
.++.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 003295 407 QMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLL--RNLRPGDGLLTLLVSGLCKNGKQAEATEL 484 (833)
Q Consensus 407 ~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 484 (833)
++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++.+|.. .++.||..+|+.++.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 67899999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC
Q 003295 485 CFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQ 564 (833)
Q Consensus 485 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 564 (833)
|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHH
Q 003295 565 PDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLI 644 (833)
Q Consensus 565 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 644 (833)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChh
Q 003295 645 RAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMD 724 (833)
Q Consensus 645 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 724 (833)
.+|++.|++++|.+++++|.+.|+.||..+|++++..|. +++++|.++.+.+..-. + .......+..+
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~--~--------g~~~~~n~w~~ 829 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD--S--------GRPQIENKWTS 829 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh--c--------cccccccchHH
Confidence 999999999999999999999999999999999986654 24666666655444321 0 01111223446
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003295 725 EAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRML 804 (833)
Q Consensus 725 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 804 (833)
+|..+|++|.+.|+.||..||+.++.++++.+..+.+..+++.|...+..|+..+|+.|++++.+. .++|..++++|.
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 799999999999999999999999988889999999999999998888889999999999998432 368999999999
Q ss_pred HCCCCCCHH
Q 003295 805 SEGLSLDEI 813 (833)
Q Consensus 805 ~~g~~p~~~ 813 (833)
..|+.|+..
T Consensus 908 ~~Gi~p~~~ 916 (1060)
T PLN03218 908 SLGVVPSVS 916 (1060)
T ss_pred HcCCCCCcc
Confidence 999999964
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.3e-72 Score=645.93 Aligned_cols=541 Identities=18% Similarity=0.262 Sum_probs=449.7
Q ss_pred HHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 003295 183 ADLLVHVYCTQFKNLGFGYAIDVFSIFSSKGIF-PSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINA 261 (833)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~A~~~f~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 261 (833)
+..+++.++ +.|++++|+++|+.|.+.|+. ++..+++.++.+|.+.|.+++|..+|+.|.. ||..+|+.++.+
T Consensus 373 ~~~~y~~l~---r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~LL~a 446 (1060)
T PLN03218 373 YIDAYNRLL---RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNMLMSV 446 (1060)
T ss_pred HHHHHHHHH---HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHHHHH
Confidence 444444444 678888888888888888854 5677777888888888888888888888853 888888888888
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHH
Q 003295 262 FCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDA 341 (833)
Q Consensus 262 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A 341 (833)
|++.|++++|.++|++|.+.|+.||.++||+||.+|++.|++++|.++|++|.+.|+.||.+||+.+|.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHh--CCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003295 342 NFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVS--KGMSPNSVTFNSLIHGFCKSGQMDNAENALEEML 419 (833)
Q Consensus 342 ~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~ 419 (833)
.++|++|.+.|+.||.++|++||.+|++.|++++|.++|++|.. .|+.||.++|+++|.+|++.|++++|.++|++|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888876 5788888888888888888888888888888888
Q ss_pred HCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003295 420 SRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVT 499 (833)
Q Consensus 420 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 499 (833)
+.|+.|+..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003295 500 SNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCS 579 (833)
Q Consensus 500 ~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 579 (833)
|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHH
Q 003295 580 LGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRL 659 (833)
Q Consensus 580 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 659 (833)
.|++++|.++|++|.+.|+.||..+|+.++..|. +++++|..+.+.+..- +. .......+..++|+.+
T Consensus 767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f---------~~-g~~~~~n~w~~~Al~l 834 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSF---------DS-GRPQIENKWTSWALMV 834 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhh---------hc-cccccccchHHHHHHH
Confidence 8888888888888888888888888888886543 2455555554433321 10 0111122334668888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 003295 660 SNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIH 739 (833)
Q Consensus 660 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 739 (833)
|++|.+.|+.||..||+.++.++++.+..+.+..++++|...+..|+..+|+++|+++++. .++|..++++|.+.|+.
T Consensus 835 f~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~ 912 (1060)
T PLN03218 835 YRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVV 912 (1060)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCC
Confidence 9999888888998899888888888888888888888888777888888899998887432 36788999999888888
Q ss_pred CCHH
Q 003295 740 PNKI 743 (833)
Q Consensus 740 p~~~ 743 (833)
|+..
T Consensus 913 p~~~ 916 (1060)
T PLN03218 913 PSVS 916 (1060)
T ss_pred CCcc
Confidence 8875
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.4e-64 Score=580.02 Aligned_cols=511 Identities=18% Similarity=0.288 Sum_probs=458.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhh-c-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 003295 216 PSLKTCNFLLNSLVKANEVQKGIEVFETMC-R-GVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNI 293 (833)
Q Consensus 216 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 293 (833)
++..+|+.++.+|.+.|++++|.++|+.|. . +..||..+|+.++.+|++.|+++.|.+++..|.+.|+.||+.+||.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 466789999999999999999999999998 3 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCh
Q 003295 294 IHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNI 373 (833)
Q Consensus 294 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~ 373 (833)
+++|++.|++++|.++|++|. .||.++||++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 999999999999999999996 4799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 003295 374 SEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEM 453 (833)
Q Consensus 374 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 453 (833)
+++.+++..+.+.|+.||..+|++||++|++.|++++|.++|++|.+
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--------------------------------- 287 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE--------------------------------- 287 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---------------------------------
Confidence 99999999999999999999999999999999999999998887642
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 003295 454 LLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKV 533 (833)
Q Consensus 454 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~ 533 (833)
+|+++||+++.+|++.|+.++|.++|++|.+.|+.||..
T Consensus 288 -----------------------------------------~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~ 326 (697)
T PLN03081 288 -----------------------------------------KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326 (697)
T ss_pred -----------------------------------------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 377889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 003295 534 TYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFC 613 (833)
Q Consensus 534 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 613 (833)
||++++.+|++.|++++|.+++..|.+.|+.||..++++++++|++.|++++|.++|++|.+ ||..+||.+|.+|+
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~ 402 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYG 402 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999864 78999999999999
Q ss_pred ccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003295 614 KADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKS-RGILPTSVTYSSLIHGLCNIGLIEDAK 692 (833)
Q Consensus 614 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~ 692 (833)
+.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999986 589999999999999999999999999
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003295 693 CLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKG 772 (833)
Q Consensus 693 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 772 (833)
+++++| ++.|+..+|++|+.+|+..|+++.|..+++++.+.+ +.+..+|..|+.+|++.|++++|.+++++|.++|
T Consensus 483 ~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 483 AMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 998866 468999999999999999999999999999997643 3356799999999999999999999999999998
Q ss_pred CCCCH-HHHHHHH---HHHh--------cCCCHHHHHHHHHHHHHCCCCCCH
Q 003295 773 ISPDS-ITYNVFM---DGHC--------KGGNVEEAFKVCDRMLSEGLSLDE 812 (833)
Q Consensus 773 ~~p~~-~~~~~l~---~~~~--------~~g~~~~A~~~~~~m~~~g~~p~~ 812 (833)
+...+ .+|..+. ..+. ...-+++..++..+|.+.|+.||.
T Consensus 559 ~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~ 610 (697)
T PLN03081 559 LSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEE 610 (697)
T ss_pred CccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 75432 2221110 0000 011245567788899999999983
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.2e-63 Score=572.58 Aligned_cols=476 Identities=22% Similarity=0.334 Sum_probs=434.6
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHH
Q 003295 284 APNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLRE-VEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNT 362 (833)
Q Consensus 284 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~ 362 (833)
..+.++|+.+|.+|++.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4577889999999999999999999999998764 678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC
Q 003295 363 LIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSR 442 (833)
Q Consensus 363 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~ 442 (833)
|+.+|++.|++++|.++|++|.+ ||.++|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~----------- 228 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFV----------- 228 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHH-----------
Confidence 99999999999999999999864 688899999999998888888888888888777665555554
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003295 443 FNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLME 522 (833)
Q Consensus 443 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~ 522 (833)
.++.++++.|..+.+.+++..+.+.|+.+|..+||+|+++|++.|++++|.++|++
T Consensus 229 ------------------------~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 284 (697)
T PLN03081 229 ------------------------VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDG 284 (697)
T ss_pred ------------------------HHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45555556666666666777777778888999999999999999999999999999
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 003295 523 MLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDI 602 (833)
Q Consensus 523 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 602 (833)
|.+. |.++|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.||.
T Consensus 285 m~~~----~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~ 360 (697)
T PLN03081 285 MPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360 (697)
T ss_pred CCCC----ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe
Confidence 9754 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003295 603 YTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGL 682 (833)
Q Consensus 603 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 682 (833)
.+|+.|+++|++.|++++|.++|++|.+ ||..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999964 699999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHH-CCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003295 683 CNIGLIEDAKCLFDEMRK-EGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEA 761 (833)
Q Consensus 683 ~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 761 (833)
++.|.+++|.++|++|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++|+.+|+..|+++.|
T Consensus 437 ~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a 513 (697)
T PLN03081 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELG 513 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHH
Confidence 999999999999999986 599999999999999999999999999999876 4789999999999999999999999
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC
Q 003295 762 AKLLNVMAEKGISP-DSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSLD 811 (833)
Q Consensus 762 ~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 811 (833)
..+++++.+ +.| +..+|..|+..|++.|++++|.+++++|.+.|+++.
T Consensus 514 ~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 514 RLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 999999976 556 467999999999999999999999999999998643
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.4e-39 Score=391.41 Aligned_cols=711 Identities=13% Similarity=0.029 Sum_probs=528.3
Q ss_pred hhcCCChHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHHcCCCCccccCCCcchHHHHHHHH---
Q 003295 91 IRSNVNPKTALKFFYFASQSCNFRFTVRSYCLLIRLLLFSNLLSPARLLLIRLIDGKMPVLYASNPSIRHIEIASQM--- 167 (833)
Q Consensus 91 ~~~~~~~~~a~~ff~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 167 (833)
....+++..|+..+.-+.... +.+..++..+..++...|.+++|...+.+++...... ..........+
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~~~~~~~~~ 240 (899)
T TIGR02917 169 ALAENRFDEARALIDEVLTAD--PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN------PAVLLALATILIEA 240 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc
Confidence 444667888888888664432 3466778888888888888888888888887654110 00000001100
Q ss_pred -------hhhhcccCCcchhhhHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 003295 168 -------VDLNVTSEPALGVQIADLLVHVYCTQFKNLGFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEV 240 (833)
Q Consensus 168 -------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 240 (833)
..+....+..+... .......++ .+..|++++|+..|+.+.+.++. ....+..+...+.+.|++++|...
T Consensus 241 g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~ 317 (899)
T TIGR02917 241 GEFEEAEKHADALLKKAPNSP-LAHYLKALV-DFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQY 317 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCCc-hHHHHHHHH-HHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHH
Confidence 00000000000000 011111221 23567888888888888776543 234455566677788888888888
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 003295 241 FETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEP 320 (833)
Q Consensus 241 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 320 (833)
|+++....+.+...+..+...+.+.|++++|...++++.+... .+...++.+...+.+.|++++|.++|+++.+.. +.
T Consensus 318 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 395 (899)
T TIGR02917 318 LNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PE 395 (899)
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC
Confidence 8888855566777788888888888888888888888887643 356778888888888888888888888887753 34
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 003295 321 SLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIH 400 (833)
Q Consensus 321 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 400 (833)
+...+..+...+...|++++|...++++.+.... +...+..++..+.+.|++++|.++++++.... +++..++..+..
T Consensus 396 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 473 (899)
T TIGR02917 396 NAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGA 473 (899)
T ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHH
Confidence 5667777888888888888888888888776432 34456667778888888888888888887653 346678888888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 003295 401 GFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAE 480 (833)
Q Consensus 401 ~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 480 (833)
.+.+.|++++|.+.|+++.+.. +.+...+..++..+...|++++|.+.++.+...++. +..++..+...+.+.|+.++
T Consensus 474 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 551 (899)
T TIGR02917 474 IYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEE 551 (899)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888887753 335566777888888888888888888888876543 55677778888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 003295 481 ATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIK 560 (833)
Q Consensus 481 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 560 (833)
|...++++.+.+. .+...+..++..|.+.|++++|..+++++.+..+. +...|..+..++.+.|++++|...++.+.+
T Consensus 552 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 629 (899)
T TIGR02917 552 AVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAAPD-SPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629 (899)
T ss_pred HHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888877643 36677778888888888888888888888776543 777888888888888888888888888887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHH
Q 003295 561 RGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVY 640 (833)
Q Consensus 561 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 640 (833)
... .+...+..+...+.+.|++++|...++++.+.. +.+..++..++..+...|++++|..+++.+.+..+. +...+
T Consensus 630 ~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 706 (899)
T TIGR02917 630 LQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGF 706 (899)
T ss_pred hCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHH
Confidence 643 366777888888888888888888888887753 445778888888888888888888888888877644 67778
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc
Q 003295 641 NTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKL 720 (833)
Q Consensus 641 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 720 (833)
..+...+.+.|++++|.+.++++...+ |+..++..++..+.+.|++++|.+.++++.+.. +.+...+..+...|.+.
T Consensus 707 ~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~ 783 (899)
T TIGR02917 707 ELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQ 783 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 888888888888888888888888764 444667778888888888888888888888763 45677888888888888
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 003295 721 GQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVC 800 (833)
Q Consensus 721 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 800 (833)
|+.++|.+.|+++.+.. +++..+++.++..+...|+ .+|+.+++++.+.. +.+..++..++..+...|++++|.+++
T Consensus 784 g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~ 860 (899)
T TIGR02917 784 KDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLL 860 (899)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888888764 6677888888888888888 77888888888742 235567778888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHhhccCCCCcc
Q 003295 801 DRMLSEGLSLDEITYTTLIDGWQSSTITNQ 830 (833)
Q Consensus 801 ~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~ 830 (833)
+++++.+.. +..++..+...+...+-.++
T Consensus 861 ~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~ 889 (899)
T TIGR02917 861 RKAVNIAPE-AAAIRYHLALALLATGRKAE 889 (899)
T ss_pred HHHHhhCCC-ChHHHHHHHHHHHHcCCHHH
Confidence 888886543 67777778888776665544
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.2e-38 Score=387.62 Aligned_cols=688 Identities=14% Similarity=0.028 Sum_probs=575.7
Q ss_pred hhcCCChHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHHcCCCCccccCCCcch-H-------HH
Q 003295 91 IRSNVNPKTALKFFYFASQSCNFRFTVRSYCLLIRLLLFSNLLSPARLLLIRLIDGKMPVLYASNPSIR-H-------IE 162 (833)
Q Consensus 91 ~~~~~~~~~a~~ff~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~-~-------~~ 162 (833)
....++...|...|..+.... +.++.++..++.++...|.+++|...+.++++..... +.... . ..
T Consensus 203 ~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 276 (899)
T TIGR02917 203 LLSLGNIELALAAYRKAIALR--PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNS----PLAHYLKALVDFQKKN 276 (899)
T ss_pred HHhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----chHHHHHHHHHHHhcC
Confidence 344679999999999876543 4578889999999999999999999999998754211 00000 0 00
Q ss_pred HHHHHhhhhcccCCcch-hhhHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 003295 163 IASQMVDLNVTSEPALG-VQIADLLVHVYCTQFKNLGFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVF 241 (833)
Q Consensus 163 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 241 (833)
...++..+....+..+. ......+... .+..|++++|...|+.+.+..+. +...+..+...+.+.|++++|...+
T Consensus 277 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~---~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~ 352 (899)
T TIGR02917 277 YEDARETLQDALKSAPEYLPALLLAGAS---EYQLGNLEQAYQYLNQILKYAPN-SHQARRLLASIQLRLGRVDEAIATL 352 (899)
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHH---HHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 01111111111111111 1111122222 23679999999999998877654 6778888999999999999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 003295 242 ETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPS 321 (833)
Q Consensus 242 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 321 (833)
+.+....+.+...++.+..++.+.|++++|.++|+++.+... .+...+..+...+...|++++|.+.++++.+.. +..
T Consensus 353 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 430 (899)
T TIGR02917 353 SPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PEL 430 (899)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-Ccc
Confidence 999865677888999999999999999999999999988643 256778889999999999999999999998764 234
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 003295 322 LITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHG 401 (833)
Q Consensus 322 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 401 (833)
...+..++..+.+.|++++|..+++++.... ..+..+|..+...|...|++++|.+.|+++.+.... +...+..++..
T Consensus 431 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 508 (899)
T TIGR02917 431 GRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARI 508 (899)
T ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHH
Confidence 4566778889999999999999999998753 346788999999999999999999999999886433 56678889999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 003295 402 FCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEA 481 (833)
Q Consensus 402 ~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 481 (833)
+.+.|++++|.+.++++.+.+ +.+..++..+...+...|+.++|...+.++...+.. +...+..++..+.+.|++++|
T Consensus 509 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 586 (899)
T TIGR02917 509 DIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKA 586 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHH
Confidence 999999999999999998864 346788999999999999999999999999877543 456677889999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 003295 482 TELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKR 561 (833)
Q Consensus 482 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 561 (833)
.++++++.+.. +.+...|..++..+...|++++|...|+++.+.++. +...+..+...+.+.|++++|...++++.+.
T Consensus 587 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 664 (899)
T TIGR02917 587 LAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALEL 664 (899)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999998763 457889999999999999999999999999987654 7788999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHH
Q 003295 562 GIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYN 641 (833)
Q Consensus 562 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 641 (833)
.. .+..++..++..+...|++++|.++++.+.+.. +.+...+..+...+.+.|++++|.+.|+++...++ +..++.
T Consensus 665 ~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~ 740 (899)
T TIGR02917 665 KP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAI 740 (899)
T ss_pred CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHH
Confidence 43 368889999999999999999999999998875 45677888899999999999999999999998754 447788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC
Q 003295 642 TLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLG 721 (833)
Q Consensus 642 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 721 (833)
.++.++.+.|++++|.+.++++.+.. +.+...+..+...|...|+.++|.+.|+++.+.. +++...++.+...+...|
T Consensus 741 ~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 741 KLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 89999999999999999999999874 5578889999999999999999999999999874 567889999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 003295 722 QMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCD 801 (833)
Q Consensus 722 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 801 (833)
+ ++|+.+++++.+.. +.+..++..++..+...|++++|.++++++++.+ +.+..++..++.++.+.|++++|.++++
T Consensus 819 ~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 895 (899)
T TIGR02917 819 D-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELD 895 (899)
T ss_pred c-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9 88999999999863 5567788899999999999999999999999975 3388999999999999999999999999
Q ss_pred HHHH
Q 003295 802 RMLS 805 (833)
Q Consensus 802 ~m~~ 805 (833)
+|++
T Consensus 896 ~~~~ 899 (899)
T TIGR02917 896 KLLN 899 (899)
T ss_pred HHhC
Confidence 9863
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.7e-27 Score=289.33 Aligned_cols=647 Identities=13% Similarity=0.041 Sum_probs=473.0
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHcCCCCccccCCCcchHHHHHHHHhhhhcccCCcchhhhHHHHHHHHHHhhhc
Q 003295 117 VRSYCLLIRLLLFSNLLSPARLLLIRLIDGKMPVLYASNPSIRHIEIASQMVDLNVTSEPALGVQIADLLVHVYCTQFKN 196 (833)
Q Consensus 117 ~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (833)
.......+++....++.+.|++.|.++..-. |- .+.....++..+ ...
T Consensus 28 ~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-------p~----------------------~p~~~~~~~~~~---l~~ 75 (1157)
T PRK11447 28 QQQLLEQVRLGEATHREDLVRQSLYRLELID-------PN----------------------NPDVIAARFRLL---LRQ 75 (1157)
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHccC-------CC----------------------CHHHHHHHHHHH---HhC
Confidence 3445666777778888999999998887543 11 122233333333 367
Q ss_pred cCHHHHHHHHHHHHhCCCCCCHHH----------------HHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHH-HHHHH
Q 003295 197 LGFGYAIDVFSIFSSKGIFPSLKT----------------CNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFL-FSTAI 259 (833)
Q Consensus 197 ~~~~~A~~~f~~~~~~~~~p~~~~----------------~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~li 259 (833)
|+.++|.+.+++..+..+. +... ...+...+.+.|++++|...|+.+..+.+|+... .....
T Consensus 76 g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~ 154 (1157)
T PRK11447 76 GDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWR 154 (1157)
T ss_pred CCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHH
Confidence 8999999999998887654 2222 2334456888999999999999999766666432 11112
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--hhh-------------
Q 003295 260 NAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPS--LIT------------- 324 (833)
Q Consensus 260 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t------------- 324 (833)
......|+.++|++.|+++.+..+. +...+..+...+.+.|+.++|+..++++........ ...
T Consensus 155 ~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~ 233 (1157)
T PRK11447 155 LVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDA 233 (1157)
T ss_pred HHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChh
Confidence 2223469999999999999987533 566788899999999999999999999876421000 011
Q ss_pred ----HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 003295 325 ----YSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIH 400 (833)
Q Consensus 325 ----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 400 (833)
+...+..+-.....++|...+.++......|+... ......+...|++++|+..|++..+.... +...+..+..
T Consensus 234 ~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~ 311 (1157)
T PRK11447 234 SVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQ 311 (1157)
T ss_pred hHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 11111111122234456666666554422333221 23456677899999999999999986433 7788899999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCc-ccH------------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHH
Q 003295 401 GFCKSGQMDNAENALEEMLSRGLSINQ-GAY------------TSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTL 467 (833)
Q Consensus 401 ~~~~~g~~~~A~~~l~~~~~~g~~~~~-~~~------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 467 (833)
.+.+.|++++|+..|++..+....... ..| ......+.+.|++++|++.+++++...+. +...+..
T Consensus 312 ~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~ 390 (1157)
T PRK11447 312 AYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLG 390 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 999999999999999999886432211 112 12345677899999999999999987653 4566778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--------CCHHHHHHHH
Q 003295 468 LVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLI--------LDKVTYNTLI 539 (833)
Q Consensus 468 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~--------~~~~~~~~li 539 (833)
+...+...|++++|.+.|+++++... .+...+..+...|. .++.++|...++.+...... .....+..+.
T Consensus 391 Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a 468 (1157)
T PRK11447 391 LGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQA 468 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHH
Confidence 89999999999999999999998643 35667777777775 46789999988775433110 0123455677
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHH
Q 003295 540 LGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIE 619 (833)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 619 (833)
..+...|++++|++.+++.++..+. +...+..+...+.+.|++++|...++++.+.. +.+...+..+...+.+.++.+
T Consensus 469 ~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~ 546 (1157)
T PRK11447 469 EALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDR 546 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHH
Confidence 7888999999999999999987544 67778889999999999999999999998753 334555555556677899999
Q ss_pred HHHHHHHHHHHCCCccCHH---------HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003295 620 EGETLFNEMISKKMELNPV---------VYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIED 690 (833)
Q Consensus 620 ~A~~~~~~~~~~~~~~~~~---------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 690 (833)
+|...++.+......++.. .+......+...|+.++|.++++. .+.+...+..+...+.+.|++++
T Consensus 547 ~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~ 621 (1157)
T PRK11447 547 AALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAA 621 (1157)
T ss_pred HHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHH
Confidence 9999998865432222221 233456778899999999999872 24566677888999999999999
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 691 AKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 691 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
|+..|+++++.. +.+...+..++..|...|++++|++.++...+.. +.+..++..+..++...|++++|.+++++++.
T Consensus 622 A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 622 ARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 999999999863 4467888999999999999999999999988753 44567788889999999999999999999987
Q ss_pred cCC--CC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-CCCCCC
Q 003295 771 KGI--SP---DSITYNVFMDGHCKGGNVEEAFKVCDRMLS-EGLSLD 811 (833)
Q Consensus 771 ~g~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~p~ 811 (833)
..- .| +...+..+...+...|++++|+..|++.+. .|+.|+
T Consensus 700 ~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 700 QAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPT 746 (1157)
T ss_pred hCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence 421 22 235677788999999999999999999975 356544
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=8.6e-27 Score=283.23 Aligned_cols=594 Identities=12% Similarity=0.035 Sum_probs=450.6
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHH----------------HHH
Q 003295 195 KNLGFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLF----------------STA 258 (833)
Q Consensus 195 ~~~~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------~~l 258 (833)
..++.+.|.+.++++....+. ++.++..++..+.+.|+.++|.+.+++..+..|.+.... ...
T Consensus 40 ~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (1157)
T PRK11447 40 ATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQ 118 (1157)
T ss_pred hhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHH
Confidence 567889999999998887665 788889999999999999999999999985445554432 334
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 003295 259 INAFCKRGRIEDAIGLFTKMEELGIAPNVV-TYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEK 337 (833)
Q Consensus 259 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 337 (833)
...+.+.|++++|.+.|+++.+.+. |+.. ....+.......|+.++|++.++++.+.. +.+...+..+...+...|+
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCC
Confidence 5578899999999999999987643 2321 11111122224699999999999999874 4466778889999999999
Q ss_pred hhHHHHHHHHHHHCCCCCC--hhh-----------------HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHH
Q 003295 338 FDDANFVLKEMSVRGFVPN--YVV-----------------YNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSL 398 (833)
Q Consensus 338 ~~~A~~~~~~m~~~g~~p~--~~~-----------------y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 398 (833)
.++|+..++++........ ... +...+..+-.....++|...++++......|+... ...
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~ 275 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQ 275 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHH
Confidence 9999999999976421100 001 11111111122234556666666554433344322 234
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh-hh------------H
Q 003295 399 IHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGD-GL------------L 465 (833)
Q Consensus 399 i~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~------------~ 465 (833)
...+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..+++.++....... .. .
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 567788999999999999999864 346788999999999999999999999999887654322 11 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 003295 466 TLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKD 545 (833)
Q Consensus 466 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~ 545 (833)
......+.+.|++++|...++++++... .+...+..+...+...|++++|++.|+++.+..+. +...+..+...+. .
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-h
Confidence 2234567899999999999999998743 46778888999999999999999999999987654 5667777777764 5
Q ss_pred CChhhHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCC
Q 003295 546 GKPEEGFKLKEDMIKRGIQ--------PDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADK 617 (833)
Q Consensus 546 g~~~~A~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 617 (833)
++.++|..+++.+...... .....+..+...+...|++++|++.|++..+.. +.+...+..+...|.+.|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 6789999888765433110 012245567778889999999999999998864 3356677889999999999
Q ss_pred HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHhcCCH
Q 003295 618 IEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSV---------TYSSLIHGLCNIGLI 688 (833)
Q Consensus 618 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---------~~~~li~~~~~~g~~ 688 (833)
+++|...++++.+..+. ++..+..+...+.+.|+.++|+..++.+......++.. .+..+...+...|+.
T Consensus 511 ~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 99999999999887554 55666666666788999999999998865432222221 233456778899999
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003295 689 EDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVM 768 (833)
Q Consensus 689 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 768 (833)
++|.++++. .+.+...+..+...+.+.|++++|++.|++..+.. +.+...+..++..|...|++++|++.++++
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999872 24566777889999999999999999999999864 567889999999999999999999999998
Q ss_pred HHcCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Q 003295 769 AEKGISP-DSITYNVFMDGHCKGGNVEEAFKVCDRMLSE 806 (833)
Q Consensus 769 ~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 806 (833)
.+. .| +..++..+..++...|++++|.+++++++..
T Consensus 664 l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 664 PAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred hcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 874 44 5567788899999999999999999999874
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=2.8e-23 Score=240.34 Aligned_cols=592 Identities=14% Similarity=0.077 Sum_probs=425.1
Q ss_pred HHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 003295 183 ADLLVHVYCTQFKNLGFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAF 262 (833)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 262 (833)
...+..++. ....|++++|++.|+...+..+. +..++..|...|.+.|+.++|+..+++..+..|.|...+..+...
T Consensus 45 ~~~f~~a~~-~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i- 121 (987)
T PRK09782 45 YPRLDKALK-AQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI- 121 (987)
T ss_pred HHHHHHHHH-HHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh-
Confidence 344444443 23569999999999999998877 588899999999999999999999999997777777776665222
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH--------HHhcCChhHHHHHHHHHHhCCCCCChhhHHH-HHHHHH
Q 003295 263 CKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHG--------LCRNGRLYEAFHLKEKMVLREVEPSLITYSI-LINGLI 333 (833)
Q Consensus 263 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-li~~~~ 333 (833)
+++++|..+++++.+..+. +..++..+... |.+. ++|.+.++ .......|+..+... +...|.
T Consensus 122 ---~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~ 193 (987)
T PRK09782 122 ---PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAI 193 (987)
T ss_pred ---ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHH
Confidence 9999999999999987543 45555555554 6555 55555554 333223334444444 489999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHH-cCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHH
Q 003295 334 KLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCK-KGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAE 412 (833)
Q Consensus 334 ~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 412 (833)
+.|++++|+.+++++.+.+.. +..-...|...|.. .++ +++..+++.. ++-+...+..++..|.+.|+.++|.
T Consensus 194 ~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~ 267 (987)
T PRK09782 194 YLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQ 267 (987)
T ss_pred HHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999998643 45556777778888 477 8888886642 3347888999999999999999999
Q ss_pred HHHHHHHHCCCC-CCcccHH------------------------------HHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 003295 413 NALEEMLSRGLS-INQGAYT------------------------------SVIKWLCINSRFNSALHFTKEMLLRNLRPG 461 (833)
Q Consensus 413 ~~l~~~~~~g~~-~~~~~~~------------------------------~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 461 (833)
++++++...... |...+|. .++..+.+++.++.+.++. .+.|.
T Consensus 268 ~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 341 (987)
T PRK09782 268 HYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPA 341 (987)
T ss_pred HHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCc
Confidence 999987654222 2222211 2245556666666554441 23444
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-C-CCCCHHHHHHHH
Q 003295 462 DGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQR-G-LILDKVTYNTLI 539 (833)
Q Consensus 462 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~-g-~~~~~~~~~~li 539 (833)
......-..+....+...++.+.++.+.... +-+....-.+.-...+.|+.++|..+|...... + -.++.....-|+
T Consensus 342 ~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~ 420 (987)
T PRK09782 342 NEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLA 420 (987)
T ss_pred chHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHH
Confidence 3332111112234467777777777777652 224555555555667889999999999998773 1 222344445777
Q ss_pred HHHHhcCC---hhhHHHH----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 003295 540 LGCCKDGK---PEEGFKL----------------------KEDMIKR-GI-QP--DNYTYNLLLHGLCSLGKMEEAIELW 590 (833)
Q Consensus 540 ~~~~~~g~---~~~A~~~----------------------~~~m~~~-g~-~p--~~~~~~~li~~~~~~g~~~~A~~~~ 590 (833)
..|.+.+. ..++..+ .+..... +. ++ +...|..+..++.. ++.++|...+
T Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~ 499 (987)
T PRK09782 421 SLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAW 499 (987)
T ss_pred HHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHH
Confidence 77777766 2333222 1111111 11 23 56677778877776 8888999988
Q ss_pred HHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 003295 591 EECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILP 670 (833)
Q Consensus 591 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 670 (833)
.+.... .|+......+...+...|++++|...|+++... .|+...+..+...+.+.|+.++|...+++..+.. +.
T Consensus 500 ~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~ 574 (987)
T PRK09782 500 LQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LG 574 (987)
T ss_pred HHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-Cc
Confidence 887765 366544444455557899999999999998665 3444556777888899999999999999998874 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003295 671 TSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIG 750 (833)
Q Consensus 671 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 750 (833)
+...+..+.......|++++|...+++.++. .|+...|..+...+.+.|+.++|+..+++..+.. +.+...++.+..
T Consensus 575 ~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~ 651 (987)
T PRK09782 575 DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGY 651 (987)
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3333444444555669999999999999985 5788889999999999999999999999999864 556778899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC
Q 003295 751 GYCKLGDMKEAAKLLNVMAEKGISP-DSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSLD 811 (833)
Q Consensus 751 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 811 (833)
++...|++++|+..++++++. .| +...+..+..++...|++++|...+++.++ +.|+
T Consensus 652 aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~ 709 (987)
T PRK09782 652 ALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDN 709 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCC
Confidence 999999999999999999984 45 678899999999999999999999999998 5565
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=1.6e-22 Score=234.08 Aligned_cols=640 Identities=12% Similarity=0.045 Sum_probs=438.3
Q ss_pred CCChHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHHcCCCCccccCCCcchHHHHHHHHhhhhcc
Q 003295 94 NVNPKTALKFFYFASQSCNFRFTVRSYCLLIRLLLFSNLLSPARLLLIRLIDGKMPVLYASNPSIRHIEIASQMVDLNVT 173 (833)
Q Consensus 94 ~~~~~~a~~ff~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (833)
.+|++.|+..|+-+-+.. +.++.++..|++.+...|.+++|+..+.+.++.. |
T Consensus 57 ~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-------P------------------ 109 (987)
T PRK09782 57 NNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-------P------------------ 109 (987)
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------c------------------
Confidence 478888888888876644 7778888888899999999999988888887654 1
Q ss_pred cCCcchhhhHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--------HHhcCChhHHHHHHHHhh
Q 003295 174 SEPALGVQIADLLVHVYCTQFKNLGFGYAIDVFSIFSSKGIFPSLKTCNFLLNS--------LVKANEVQKGIEVFETMC 245 (833)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~--------~~~~g~~~~A~~~~~~~~ 245 (833)
........|. . -+.+.+|..+|+++.+..+. +..++..+... |.+.+...+++. ...
T Consensus 110 ----~n~~~~~~La-----~--i~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~- 174 (987)
T PRK09782 110 ----GDARLERSLA-----A--IPVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DAT- 174 (987)
T ss_pred ----ccHHHHHHHH-----H--hccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH--Hhh-
Confidence 0111122221 1 15677888889888877655 44555555554 555544444444 111
Q ss_pred cCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCChh
Q 003295 246 RGVSPDVFLFST-AINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCR-NGRLYEAFHLKEKMVLREVEPSLI 323 (833)
Q Consensus 246 ~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~ 323 (833)
....|+..+... +.+.|.+.|++++|++.+.++.+.++. +..-...|..+|.. .++ +++..+++. .+..|..
T Consensus 175 ~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~ 248 (987)
T PRK09782 175 FAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQ 248 (987)
T ss_pred hCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHH
Confidence 222333443333 488888899999999999999887643 44556677778877 466 777777553 2235778
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CChhhHHHHHHHHHHcCChH-HHHHHHHHHHhCCCCCCh-hHHHHHHH
Q 003295 324 TYSILINGLIKLEKFDDANFVLKEMSVRGFV-PNYVVYNTLIDGYCKKGNIS-EALKIRDDMVSKGMSPNS-VTFNSLIH 400 (833)
Q Consensus 324 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~y~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~-~~~~~li~ 400 (833)
.+..++..|.+.|+.++|..+++++...-.. |+..+|.-+ +.+.+... .|..-|.+ ...++. .....++.
T Consensus 249 l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 321 (987)
T PRK09782 249 SRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYL---LSKYSANPVQALANYTV----QFADNRQYVVGATLP 321 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHH---HHhccCchhhhccchhh----hhHHHHHHHHHHHHH
Confidence 8888888899999999999888887654222 444443333 34444432 11111111 011111 12233477
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 003295 401 GFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWL--CINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQ 478 (833)
Q Consensus 401 ~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 478 (833)
.+.+.++++.+.++.. ..|.... ...+.. ...+...++.+.+..|.+.... +......+.-...+.|+.
T Consensus 322 ~~~~~~~~~~~~~~~~------~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~ 392 (987)
T PRK09782 322 VLLKEGQYDAAQKLLA------TLPANEM--LEERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQS 392 (987)
T ss_pred HHHhccHHHHHHHHhc------CCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccH
Confidence 7888888886665522 2222222 222222 2336677777777777665332 333444445556788899
Q ss_pred HHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcCC---HHHHHHH-------------------------HHHHhhCCC
Q 003295 479 AEATELCFRLFEK-G-FTVNTVTSNALIHGMCEAGN---LKEAGKL-------------------------LMEMLQRGL 528 (833)
Q Consensus 479 ~~A~~~~~~~~~~-g-~~~~~~~~~~li~~~~~~g~---~~~A~~~-------------------------l~~m~~~g~ 528 (833)
++|..++++.... + ...+....+-++..|.+.+. ..++..+ +...... .
T Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~ 471 (987)
T PRK09782 393 REAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-M 471 (987)
T ss_pred HHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-C
Confidence 9999999988773 1 22244555577777777765 3333222 1122211 1
Q ss_pred CC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHH
Q 003295 529 IL--DKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYG 606 (833)
Q Consensus 529 ~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 606 (833)
++ +...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...|+++... +|+...+.
T Consensus 472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~ 546 (987)
T PRK09782 472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLL 546 (987)
T ss_pred CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHH
Confidence 23 56778888877776 8899999988888876 356554444555667899999999999998664 45555566
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003295 607 VMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIG 686 (833)
Q Consensus 607 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 686 (833)
.+...+.+.|+.++|...+++.++..+. +...+..+.....+.|++++|...+++..+. .|+...+..+...+.+.|
T Consensus 547 ~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG 623 (987)
T PRK09782 547 AAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCC
Confidence 7778889999999999999999987533 3344444444555669999999999999987 457888999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003295 687 LIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLN 766 (833)
Q Consensus 687 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 766 (833)
+.++|+..+++..+.. +.+...++.+...+...|+.++|+..+++..+.. +-+...+..+..++...|++++|+..++
T Consensus 624 ~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 624 NVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999863 4466788888899999999999999999999864 5567899999999999999999999999
Q ss_pred HHHHcCCCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH
Q 003295 767 VMAEKGISPDS-ITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSLDE 812 (833)
Q Consensus 767 ~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 812 (833)
++++ +.|+. .+.....+...+..+++.|.+.+.+... +.|+.
T Consensus 702 ~Al~--l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~--~~~~~ 744 (987)
T PRK09782 702 LVID--DIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT--FSFDS 744 (987)
T ss_pred HHHh--cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cCccc
Confidence 9998 55754 6666777888888888888888877766 44443
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=3e-19 Score=192.58 Aligned_cols=664 Identities=12% Similarity=0.082 Sum_probs=461.2
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHcCCCCccccCCCcchHHHHHHHHhhhhcccCCcchhhhHHHHHHHHHHh-h-
Q 003295 117 VRSYCLLIRLLLFSNLLSPARLLLIRLIDGKMPVLYASNPSIRHIEIASQMVDLNVTSEPALGVQIADLLVHVYCTQ-F- 194 (833)
Q Consensus 117 ~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~- 194 (833)
...|...+.-+.+.|+.++...+|..-+..... .+..+ .... ....+.|..-|... +
T Consensus 41 le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~-~y~d~----~~~~----------------~~a~~~laay~s~~a~k 99 (1018)
T KOG2002|consen 41 LEAWIEIALEYYKQGKTEEFIKILESGLIDANE-EYADV----KSDQ----------------MKALDILAAYYSQLAMK 99 (1018)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHhhhhcccc-hhcch----HHHH----------------HHHHHHHHHHHHHHHHH
Confidence 457888889999999999999998776522100 00010 0010 11122222211100 0
Q ss_pred ------hccCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCC--hhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 003295 195 ------KNLGFGYAIDVFSIFSSKGIF-PSLKTCNFLLNSLVKANE--VQKGIEVFETMCRGVSPDVFLFSTAINAFCKR 265 (833)
Q Consensus 195 ------~~~~~~~A~~~f~~~~~~~~~-p~~~~~~~ll~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (833)
+...+..|.-.|+..-..... ++..+.... .|...|. ++.|...|..+++..++|+-.+..-.......
T Consensus 100 ek~~~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~--~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynk 177 (1018)
T KOG2002|consen 100 EKKKDEKDELFDKATLLFDLADKIDMYEDSHLLVQRG--FLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNK 177 (1018)
T ss_pred HHhcchhHHHHHHHHHHhhHHHHhhccCcchhhhhhh--hhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhcc
Confidence 111133455555544332211 111111111 1223333 58899999888866677877765555566678
Q ss_pred CChhHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHH---hcCChh
Q 003295 266 GRIEDAIGLFTKMEELG--IAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSL-ITYSILINGLI---KLEKFD 339 (833)
Q Consensus 266 g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~li~~~~---~~g~~~ 339 (833)
|++..|+.+|....... +.||+. -.+...+.+.|+.+.|+..|++..+. .|+. .++-.|.-.-. ....+.
T Consensus 178 kdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~ 253 (1018)
T KOG2002|consen 178 KDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEVDLNFNDSDSYK 253 (1018)
T ss_pred ccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHHHHHccchHHHH
Confidence 89999999999976543 334443 23345556889999999999999876 3433 23322222111 223456
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC--ChhHHHHHHHHHHhcCChhHHHHHHHH
Q 003295 340 DANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSP--NSVTFNSLIHGFCKSGQMDNAENALEE 417 (833)
Q Consensus 340 ~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~l~~ 417 (833)
.+..++...-.... -|++..+.|...|.-.|++..+..+...+......- -...|--+.++|-..|++++|...|.+
T Consensus 254 ~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~ 332 (1018)
T KOG2002|consen 254 KGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME 332 (1018)
T ss_pred HHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 67777766655432 267788888999999999999999998888753211 123466788899999999999999988
Q ss_pred HHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC----CHHHHHHHHHHHHHCCC
Q 003295 418 MLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNG----KQAEATELCFRLFEKGF 493 (833)
Q Consensus 418 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~g~ 493 (833)
..+....-....+.-+...+.+.|+++.+...|.......+. +..+...|...|...+ ..+.|..++.+..+..
T Consensus 333 s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~- 410 (1018)
T KOG2002|consen 333 SLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT- 410 (1018)
T ss_pred HHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-
Confidence 877543333455677888899999999999999888876433 5567777777777765 5677888887777763
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----hhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC---CCCCC
Q 003295 494 TVNTVTSNALIHGMCEAGNLKEAGKLLMEM----LQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKR---GIQPD 566 (833)
Q Consensus 494 ~~~~~~~~~li~~~~~~g~~~~A~~~l~~m----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~ 566 (833)
+.|...|-.+...+-...-+.. +..|..+ ...+-.+.+...|.+.......|++++|...|...... ...+|
T Consensus 411 ~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d 489 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD 489 (1018)
T ss_pred cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence 4578888888887766554444 6666544 34455578889999999999999999999999998765 12223
Q ss_pred H------HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHH
Q 003295 567 N------YTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPD-IYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVV 639 (833)
Q Consensus 567 ~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 639 (833)
. .+-..+....-..++.+.|.+.|..+.+.. |+ +..|..+.-+....+...+|...+.+.....- .++..
T Consensus 490 e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~a 566 (1018)
T KOG2002|consen 490 EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNA 566 (1018)
T ss_pred ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHH
Confidence 2 234446666777789999999999998863 44 34454444344445788899999999887654 37888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCC
Q 003295 640 YNTLIRAYCKIGNTTAAFRLSNDMKSR-GILPTSVTYSSLIHGLCN------------IGLIEDAKCLFDEMRKEGLLPN 706 (833)
Q Consensus 640 ~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~g~~p~ 706 (833)
+..+...+.+...+..|.+-|+...+. ...+|..+..+|.+.|.+ .+..++|+++|.+.++.. +-|
T Consensus 567 rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN 645 (1018)
T KOG2002|consen 567 RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKN 645 (1018)
T ss_pred HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cch
Confidence 888888999999998898877776654 223677777777776642 345788999999999863 458
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHH
Q 003295 707 VACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGI-SPDSITYNVFMD 785 (833)
Q Consensus 707 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~ 785 (833)
...-|.+.-.++..|++.+|..+|.+..+.. ..+..+|-.+.++|...|+|..|+++|+....+-. .-+..+...|.+
T Consensus 646 ~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lar 724 (1018)
T KOG2002|consen 646 MYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLAR 724 (1018)
T ss_pred hhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 8888999999999999999999999999864 44667899999999999999999999999887533 347788999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003295 786 GHCKGGNVEEAFKVCDRMLSEGLSLDEITYT 816 (833)
Q Consensus 786 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 816 (833)
++.+.|++.+|.+++.........-...-++
T Consensus 725 a~y~~~~~~eak~~ll~a~~~~p~~~~v~FN 755 (1018)
T KOG2002|consen 725 AWYEAGKLQEAKEALLKARHLAPSNTSVKFN 755 (1018)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCccchHHhH
Confidence 9999999999999998888743332344444
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=3.5e-22 Score=203.69 Aligned_cols=430 Identities=14% Similarity=0.065 Sum_probs=199.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Q 003295 326 SILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKS 405 (833)
Q Consensus 326 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 405 (833)
..|.+-..+.|++++|++.-...-..+. .+....-.+-.++.+..+++.....-....+...+ -..+|..+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q-~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ-GAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhccch-HHHHHHHHHHHHHHh
Confidence 3455555666666666665544433311 11222222333455555555544443333333222 345666666666666
Q ss_pred CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 003295 406 GQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELC 485 (833)
Q Consensus 406 g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 485 (833)
|++++|+++++.+++... -....|..+..++...|+.+.|.+.|.+.++.++. .....+.+...+...|++++|..-+
T Consensus 130 g~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alqlnP~-l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD-LYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred chHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc-hhhhhcchhHHHHhhcccchhHHHH
Confidence 666777666666666532 24555666666666666666666666555543321 0112223333334445555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCC
Q 003295 486 FRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQP 565 (833)
Q Consensus 486 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 565 (833)
.+.++... .-.+.|+.|...+-.+|+...|+..|++..+..+. =...|-.|...|...+.++.|+..+.+.......
T Consensus 208 lkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn- 284 (966)
T KOG4626|consen 208 LKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN- 284 (966)
T ss_pred HHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-
Confidence 44444321 12334455555555555555555555554444322 2234444444444444555555444444443211
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHH
Q 003295 566 DNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPD-IYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLI 644 (833)
Q Consensus 566 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 644 (833)
..+.+..+...|...|.++.|+..|++.++. .|+ ...|+.|..++-..|++.+|+..+.+.+...+. -..+.+.+.
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLg 361 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLG 361 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHH
Confidence 2333444444444445555555555444443 222 334444444444444444444444444443322 333444444
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHhcCCh
Q 003295 645 RAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNV-ACYTALIGGYCKLGQM 723 (833)
Q Consensus 645 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~ 723 (833)
..|...|.+++|..+|....+.. +.-....+.|...|-++|++++|+..+++.++ +.|+. ..|+.+...|-..|+.
T Consensus 362 ni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhH
Confidence 44444444444444444444331 11223344444444444444444444444444 33432 3444444444444444
Q ss_pred hHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 724 DEAESVLQEMASINIHPN-KITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 724 ~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
+.|.+.+.+.+.. .|. ...++.|...|...|++.+|+.-+++++.
T Consensus 439 ~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 439 SAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 4444444444432 222 23444444444444444444444444444
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.92 E-value=3.7e-19 Score=191.89 Aligned_cols=536 Identities=14% Similarity=0.082 Sum_probs=378.9
Q ss_pred HHHhhhccCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc--
Q 003295 190 YCTQFKNLGFGYAIDVFSIFSSKG--IFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKR-- 265 (833)
Q Consensus 190 ~~~~~~~~~~~~A~~~f~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 265 (833)
.|-.|..+++..|+..|..++... +.||++. .+...+++.|+.+.|+..|.+++.-.|.++.++..|.-.-...
T Consensus 171 A~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d 248 (1018)
T KOG2002|consen 171 ARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFND 248 (1018)
T ss_pred HHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccc
Confidence 344677889999999999865543 4455543 3446777889999999999988854444555544443332222
Q ss_pred -CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCChhHHH
Q 003295 266 -GRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEP--SLITYSILINGLIKLEKFDDAN 342 (833)
Q Consensus 266 -g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~li~~~~~~g~~~~A~ 342 (833)
..+..|..++...-.... -|++..+.|.+.|...|++..+.++.+.+....... -...|--+.++|...|++++|.
T Consensus 249 ~~s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~ 327 (1018)
T KOG2002|consen 249 SDSYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAF 327 (1018)
T ss_pred hHHHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHH
Confidence 235566666666655443 377888889999999999999999988888653111 1234677888899999999999
Q ss_pred HHHHHHHHCCCCCC--hhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcC----ChhHHHHHHH
Q 003295 343 FVLKEMSVRGFVPN--YVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSG----QMDNAENALE 416 (833)
Q Consensus 343 ~~~~~m~~~g~~p~--~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~l~ 416 (833)
..|.+..+. .+| +..+--|...|.+.|+++++...|+.+..... -+..|...|...|...+ ..+.|..++.
T Consensus 328 ~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~ 404 (1018)
T KOG2002|consen 328 KYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLG 404 (1018)
T ss_pred HHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence 999888876 344 34455678889999999999999999887632 25567777777776664 5677777777
Q ss_pred HHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH----HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 003295 417 EMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEM----LLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEK- 491 (833)
Q Consensus 417 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 491 (833)
+..+.- +.|...|..+...+....-+.. +..+..+ ...+..+.....+.+.......|++++|...|.+....
T Consensus 405 K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~ 482 (1018)
T KOG2002|consen 405 KVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKL 482 (1018)
T ss_pred HHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence 777663 4567777777777666544443 5555443 34455567778888888889999999999988887765
Q ss_pred --CC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCC
Q 003295 492 --GF------TVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGI 563 (833)
Q Consensus 492 --g~------~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 563 (833)
.. .+++.+-..+...+-..++.+.|.+++..+.+..+. -...|-.++......+...+|..++...+...
T Consensus 483 ~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d- 560 (1018)
T KOG2002|consen 483 LEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID- 560 (1018)
T ss_pred hhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-
Confidence 11 122323444666667778899999999998887433 33344444433334567888888888888764
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHhhHHHHHHHHHc------------cCCHHHHHHHHHHHHH
Q 003295 564 QPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVF-GPDIYTYGVMIDGFCK------------ADKIEEGETLFNEMIS 630 (833)
Q Consensus 564 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~ 630 (833)
..++..+..+...+.+...+..|.+-|..+.+.-. .+|+.+.-.|.+.|.+ .+..++|+++|.+.++
T Consensus 561 ~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~ 640 (1018)
T KOG2002|consen 561 SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR 640 (1018)
T ss_pred cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh
Confidence 33666777777788888888888887766654322 2566665555554432 3456788888888888
Q ss_pred CCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhH
Q 003295 631 KKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKE-GLLPNVAC 709 (833)
Q Consensus 631 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~ 709 (833)
..+. |...-|.+.-.++..|++.+|..+|.+..+... ....+|..+.++|...|++..|+++|+...+. +-..+..+
T Consensus 641 ~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~v 718 (1018)
T KOG2002|consen 641 NDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEV 718 (1018)
T ss_pred cCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 7766 778888888888888999999999988887643 24556778888888899999999998887765 33446777
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003295 710 YTALIGGYCKLGQMDEAESVLQEMASIN 737 (833)
Q Consensus 710 ~~~li~~~~~~g~~~~A~~~~~~m~~~g 737 (833)
...|..++.+.|.+.+|.+.+.......
T Consensus 719 l~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 719 LHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 8888888888888888888888777643
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=4e-21 Score=196.08 Aligned_cols=439 Identities=15% Similarity=0.132 Sum_probs=353.0
Q ss_pred HhhhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHH
Q 003295 192 TQFKNLGFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDA 271 (833)
Q Consensus 192 ~~~~~~~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 271 (833)
..++.|++..|.+.-...-+.++. +....-.+-..+.+..+++.....-....+..+.-..+|..+.+.+-..|++++|
T Consensus 57 ~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~a 135 (966)
T KOG4626|consen 57 RLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDA 135 (966)
T ss_pred HHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHH
Confidence 345789999998876555444432 2223333445666777777766665555555667788999999999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHH-HHHHHHHhcCChhHHHHHHHHHHH
Q 003295 272 IGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYS-ILINGLIKLEKFDDANFVLKEMSV 350 (833)
Q Consensus 272 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~-~li~~~~~~g~~~~A~~~~~~m~~ 350 (833)
+.+++.|.+.... .+..|-.+..++...|+.+.|.+.|.+..+. .|+.+... -+...+...|++++|...+.+..+
T Consensus 136 l~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 136 LALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE 212 (966)
T ss_pred HHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence 9999999986432 5778999999999999999999999999875 56655443 445555668999999999999887
Q ss_pred CCCCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcc
Q 003295 351 RGFVPN-YVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPN-SVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQG 428 (833)
Q Consensus 351 ~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~ 428 (833)
. .|. .+.|+.|...+-..|++..|++.|++.+.. +|+ ...|-.|...|-..+.+++|...+.+..... +-..+
T Consensus 213 ~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~ 287 (966)
T KOG4626|consen 213 T--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAV 287 (966)
T ss_pred h--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchh
Confidence 6 454 678999999999999999999999999885 454 3578889999999999999999999988752 33567
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003295 429 AYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMC 508 (833)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 508 (833)
.+..+...|..+|.+|.|+..+++.++..+. =...|+.+..++...|++.+|.+.+.+.+... +....+.+.|...|.
T Consensus 288 a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 288 AHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYR 365 (966)
T ss_pred hccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 8888889999999999999999999886544 24578999999999999999999999988863 335678889999999
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 003295 509 EAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPD-NYTYNLLLHGLCSLGKMEEAI 587 (833)
Q Consensus 509 ~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~ 587 (833)
+.|.+++|..+|....+-.+. =...++.|...|-++|++++|+.-+++.++. .|+ ...|+.+...|-..|+.+.|.
T Consensus 366 E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred HhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHH
Confidence 999999999999998876443 4567888999999999999999999999875 554 467888999999999999999
Q ss_pred HHHHHHhhCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHH
Q 003295 588 ELWEECKRTVFGPD-IYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAY 647 (833)
Q Consensus 588 ~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 647 (833)
+.+.+.+... |. ....+.|...|-..|++.+|+.-+++.++..+. .+..|..++.++
T Consensus 443 q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD-fpdA~cNllh~l 500 (966)
T KOG4626|consen 443 QCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD-FPDAYCNLLHCL 500 (966)
T ss_pred HHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC-CchhhhHHHHHH
Confidence 9999988753 43 567888999999999999999999999887554 344555555443
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=5e-20 Score=200.13 Aligned_cols=303 Identities=13% Similarity=0.050 Sum_probs=228.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc
Q 003295 504 IHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPD---NYTYNLLLHGLCSL 580 (833)
Q Consensus 504 i~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~ 580 (833)
...+...|++++|...|.++.+.++. +..++..+...+...|++++|..+++.+.+.+..++ ...+..++..+.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 33456677788888888888776543 556777777778888888888888887776533222 24567777788888
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCH----HHHHHHHHHHHHcCChHHH
Q 003295 581 GKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNP----VVYNTLIRAYCKIGNTTAA 656 (833)
Q Consensus 581 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A 656 (833)
|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.++.+.. ..+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 88888888888887652 345677888888888888888888888888776544322 2455677778888889999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003295 657 FRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASI 736 (833)
Q Consensus 657 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 736 (833)
...++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|++.|++++|.+.++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99888888764 33556777788888889999999999998887531222456788888899999999999999988874
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCCCCHH
Q 003295 737 NIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCK---GGNVEEAFKVCDRMLSEGLSLDEI 813 (833)
Q Consensus 737 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 813 (833)
.|+...+..++..+.+.|++++|..+++++++. .|+..++..++..+.. .|+.+++..++++|++++++|+..
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 466666788888899999999999999988874 6888888887777664 458889999999999887777743
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=4.6e-20 Score=200.43 Aligned_cols=303 Identities=17% Similarity=0.122 Sum_probs=206.2
Q ss_pred HHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcC
Q 003295 225 LNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPN---VVTYNNIIHGLCRNG 301 (833)
Q Consensus 225 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g 301 (833)
...+...|++++|...|+++.+..+.+..++..+...+...|++++|...++.+...+..++ ...+..++..|.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 33456778888888888888854556677788888888888888888888888876432211 245677788888888
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHHcCChHHHH
Q 003295 302 RLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNY----VVYNTLIDGYCKKGNISEAL 377 (833)
Q Consensus 302 ~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~y~~li~~~~~~g~~~~A~ 377 (833)
++++|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+.+.+..++. ..|..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 8888888888887652 446677888888888888888888888888776433221 23455666777788888888
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003295 378 KIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRN 457 (833)
Q Consensus 378 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 457 (833)
+.|+++.+... .+...+..+...+.+.|++++|.++++++.+.+.....
T Consensus 201 ~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~------------------------------ 249 (389)
T PRK11788 201 ALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS------------------------------ 249 (389)
T ss_pred HHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH------------------------------
Confidence 88888776532 24456667777777778888887777777654321111
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 003295 458 LRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNT 537 (833)
Q Consensus 458 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~ 537 (833)
.++..++..|++.|++++|...++++.+.. |+...+..++..+.+.|++++|..+++++.+. .|+..+++.
T Consensus 250 -----~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~ 320 (389)
T PRK11788 250 -----EVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHR 320 (389)
T ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHH
Confidence 233444555555555666665555555542 33344566777777777777777777777665 456667777
Q ss_pred HHHHHHh---cCChhhHHHHHHHHHHCCCCCCHH
Q 003295 538 LILGCCK---DGKPEEGFKLKEDMIKRGIQPDNY 568 (833)
Q Consensus 538 li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 568 (833)
++..++. .|+.++++.++++|.+.++.|++.
T Consensus 321 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 321 LLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7766664 446777777777777766655554
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=3.2e-18 Score=195.84 Aligned_cols=430 Identities=16% Similarity=0.039 Sum_probs=258.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHH
Q 003295 288 VTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVP-NYVVYNTLIDG 366 (833)
Q Consensus 288 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~y~~li~~ 366 (833)
..+......+.+.|++++|+..|++.+.. .|+...|..+..+|.+.|++++|+..+++..+. .| +...|..+..+
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a 203 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHH
Confidence 45667888888999999999999998864 577888888888899999999999999998876 34 46678888888
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHH
Q 003295 367 YCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSA 446 (833)
Q Consensus 367 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 446 (833)
|...|++++|+.-|......+...+. ....++.-+.+ ..+.....+..+. .+.+...+..+...+ .....+.+
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~-~~~~~~~~~~~~~~~-~~~~~~~~ 276 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILET-KPENLPSVTFVGNYL-QSFRPKPR 276 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhc-CCCCCCCHHHHHHHH-HHccCCcc
Confidence 99999999998888766543211121 11122221111 1222222222222 112222222222211 11111111
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHH
Q 003295 447 LHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHG---MCEAGNLKEAGKLLMEM 523 (833)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~l~~m 523 (833)
..-+.+.... .+. ....+..+... ....+++++|...|++.
T Consensus 277 ~~~~~~~~~~--~~~----------------------------------~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~a 320 (615)
T TIGR00990 277 PAGLEDSNEL--DEE----------------------------------TGNGQLQLGLKSPESKADESYEEAARAFEKA 320 (615)
T ss_pred hhhhhccccc--ccc----------------------------------cccchHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 1000000000 000 00000111100 02235566777777766
Q ss_pred hhCCC--CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 003295 524 LQRGL--ILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPD 601 (833)
Q Consensus 524 ~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 601 (833)
.+.+. +-+...|..+...+...|++++|+..+++.++.... +...|..+...+...|++++|...|+++.+.. +.+
T Consensus 321 l~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~ 398 (615)
T TIGR00990 321 LDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SED 398 (615)
T ss_pred HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 65531 113445666666666677777777777777665322 34566666666777777777777777766543 334
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003295 602 IYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHG 681 (833)
Q Consensus 602 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 681 (833)
...|..+...+...|++++|...|++.++..+. +...+..+...+.+.|++++|+..+++..+.. +.+...++.+...
T Consensus 399 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~ 476 (615)
T TIGR00990 399 PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGEL 476 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 566666777777777777777777777766543 55666667777777777777777777776652 3356667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCh--h------HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003295 682 LCNIGLIEDAKCLFDEMRKEGLLPNV--A------CYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYC 753 (833)
Q Consensus 682 ~~~~g~~~~A~~~~~~m~~~g~~p~~--~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 753 (833)
+...|++++|++.|++.++. .|+. . .++..+..+...|++++|.+++++..+.. +.+...+..++..+.
T Consensus 477 ~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~ 553 (615)
T TIGR00990 477 LLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLL 553 (615)
T ss_pred HHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 77777888888777777764 2211 1 11112222334578888888888877653 334556777888888
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 003295 754 KLGDMKEAAKLLNVMAEK 771 (833)
Q Consensus 754 ~~g~~~~A~~~~~~m~~~ 771 (833)
+.|++++|+++|+++.+.
T Consensus 554 ~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 554 QQGDVDEALKLFERAAEL 571 (615)
T ss_pred HccCHHHHHHHHHHHHHH
Confidence 888888888888887763
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=9.8e-18 Score=191.78 Aligned_cols=435 Identities=13% Similarity=0.012 Sum_probs=284.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 003295 253 FLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGL 332 (833)
Q Consensus 253 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~ 332 (833)
..+......+.+.|++++|...|++..+. .|+...|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 45778889999999999999999999875 5788899999999999999999999999999864 34567889999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHH
Q 003295 333 IKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAE 412 (833)
Q Consensus 333 ~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 412 (833)
...|++++|...|......+...+.. ...++.-+.. ..+........+.. +++...+..+. .|......+.+.
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~-~~~~~~~~~~~~ 277 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVG-NYLQSFRPKPRP 277 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHH-HHHHHccCCcch
Confidence 99999999999998776543221222 1222222222 22333333333321 11222332222 232222222222
Q ss_pred HHHHHHHHCCCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003295 413 NALEEMLSRGLSINQ-GAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEK 491 (833)
Q Consensus 413 ~~l~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 491 (833)
+-+.+..+. .+.. ..+..+...+ .-....+++++|.+.|++.++.
T Consensus 278 ~~~~~~~~~--~~~~~~~~~~l~~~~--------------------------------~e~~~~~~y~~A~~~~~~al~~ 323 (615)
T TIGR00990 278 AGLEDSNEL--DEETGNGQLQLGLKS--------------------------------PESKADESYEEAARAFEKALDL 323 (615)
T ss_pred hhhhccccc--ccccccchHHHHHHH--------------------------------HHhhhhhhHHHHHHHHHHHHhc
Confidence 222221111 1100 0011110000 0012234566666666666654
Q ss_pred C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHH
Q 003295 492 G--FTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYT 569 (833)
Q Consensus 492 g--~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 569 (833)
+ .+.+...++.+...+...|++++|+..|++..+..+. +...|..+...+...|++++|...++++++.... +..+
T Consensus 324 ~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~ 401 (615)
T TIGR00990 324 GKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDI 401 (615)
T ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHH
Confidence 3 1224456777777777788888888888887776443 4566777777777788888888888887776432 5677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHH
Q 003295 570 YNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCK 649 (833)
Q Consensus 570 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 649 (833)
+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|+..|++.++..+. ++..|+.+...+..
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~ 479 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLD 479 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 7777778888888888888888877653 334566667777788888888888888888776443 67778888888888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCh
Q 003295 650 IGNTTAAFRLSNDMKSRGILPTSV------TYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQM 723 (833)
Q Consensus 650 ~g~~~~A~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 723 (833)
.|++++|.+.|++........+.. .++..+..+...|++++|.+++++..+.. +.+...+..+...+.+.|++
T Consensus 480 ~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 480 QNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred ccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCH
Confidence 888888888888877653221111 11222223344688999999999888753 23445688888899999999
Q ss_pred hHHHHHHHHHHhC
Q 003295 724 DEAESVLQEMASI 736 (833)
Q Consensus 724 ~~A~~~~~~m~~~ 736 (833)
++|.+.|++..+.
T Consensus 559 ~eAi~~~e~A~~l 571 (615)
T TIGR00990 559 DEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=2.3e-17 Score=187.81 Aligned_cols=331 Identities=10% Similarity=0.024 Sum_probs=198.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003295 430 YTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCE 509 (833)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 509 (833)
...++..+.+.|++++|..++...+...+.... .+..++.+....|++++|.+.++++.+..+ .+...+..+...+.+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHH
Confidence 334444555556666666666655555444333 233333444556666666666666666532 245566666666777
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003295 510 AGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIEL 589 (833)
Q Consensus 510 ~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 589 (833)
.|++++|...++++.+..+. +...+..+...+...|+.++|...++.+......+ ...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHH
Confidence 77777777777776665433 55566666666777777777777776666553332 2222222 235666777777777
Q ss_pred HHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHH----HHHHHHHHHh
Q 003295 590 WEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTA----AFRLSNDMKS 665 (833)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~ 665 (833)
++.+.+....++...+..+...+.+.|++++|+..++++.+..+. +...+..+...+...|++++ |...+++..+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 766655432233334444455666677777777777777665543 56666666777777777664 6666776666
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HH
Q 003295 666 RGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNK-IT 744 (833)
Q Consensus 666 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~ 744 (833)
.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+..++.+.|++++|...++++.+. .|+. ..
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~ 354 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKW 354 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHH
Confidence 53 3355566666677777777777777777766642 223445556666677777777777777776653 3333 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 745 YTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 745 ~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
+..+..++...|++++|+..|+++.+
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33345566677777777777777666
No 22
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.86 E-value=3.5e-15 Score=160.73 Aligned_cols=363 Identities=13% Similarity=0.060 Sum_probs=275.9
Q ss_pred hhhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 003295 193 QFKNLGFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAI 272 (833)
Q Consensus 193 ~~~~~~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 272 (833)
.+.+|++++|..++..+++..+. ....|.+|...|-..|+.+++...+-.+..-.|.|..-|..+..-..+.|.+++|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 34579999999999999988776 78899999999999999999999987776666778899999999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhh-----HHHHHHHHHhcCChhHHHHHHHH
Q 003295 273 GLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLIT-----YSILINGLIKLEKFDDANFVLKE 347 (833)
Q Consensus 273 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-----~~~li~~~~~~g~~~~A~~~~~~ 347 (833)
-.|.+.++..+ ++...+---+..|-+.|+...|.+-|.++..... |...- --..++.+...++-+.|.+.++.
T Consensus 228 ~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 228 YCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999753 2444444456778899999999999999998642 33222 22345667777888999999999
Q ss_pred HHHCCC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChh----------------------HHH----HHHH
Q 003295 348 MSVRGF-VPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSV----------------------TFN----SLIH 400 (833)
Q Consensus 348 m~~~g~-~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------------------~~~----~li~ 400 (833)
....+. ..+...++.++..|.+...++.|......+......+|.. .|. -+.-
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 877322 2346678899999999999999999888887622222211 111 2233
Q ss_pred HHHhcCChhHHHHHHHHHHHCC--CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 003295 401 GFCKSGQMDNAENALEEMLSRG--LSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQ 478 (833)
Q Consensus 401 ~~~~~g~~~~A~~~l~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 478 (833)
++......+....+.....+.. +..+...|..+.+++...|++.+|+.++..+......-+..+|..+..+|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 4444555555555555566555 44566789999999999999999999999999888777888999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--------CCCCHHHHHHHHHHHHhcCChhh
Q 003295 479 AEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRG--------LILDKVTYNTLILGCCKDGKPEE 550 (833)
Q Consensus 479 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g--------~~~~~~~~~~li~~~~~~g~~~~ 550 (833)
++|.+.++.++... +.+...--+|...+.+.|+.++|.+.+..+..-+ ..|+..........+...|+.++
T Consensus 466 e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 466 EEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999873 3366677788889999999999999999865322 22333333444556667777766
Q ss_pred HHHHHHHHH
Q 003295 551 GFKLKEDMI 559 (833)
Q Consensus 551 A~~~~~~m~ 559 (833)
-+.....|+
T Consensus 545 fi~t~~~Lv 553 (895)
T KOG2076|consen 545 FINTASTLV 553 (895)
T ss_pred HHHHHHHHH
Confidence 555444443
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=2.4e-17 Score=187.70 Aligned_cols=330 Identities=12% Similarity=0.082 Sum_probs=168.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 003295 223 FLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGR 302 (833)
Q Consensus 223 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 302 (833)
.++..+.+.|++++|..+++..+...+.+...+..++.+....|++++|...|+++.+..+. +...+..+...+.+.|+
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCC
Confidence 34555566666777766666666444445555555566666666677777777666665322 34456666666666666
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 003295 303 LYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDD 382 (833)
Q Consensus 303 ~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~ 382 (833)
+++|...++++.... +.+...+..++..+...|++++|...++.+...... +...+..+ ..+.+.|++++|...++.
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 666666666666542 234455566666666666666666666666544222 12222222 235566666666666666
Q ss_pred HHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhH----HHHHHHHHHHCCC
Q 003295 383 MVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNS----ALHFTKEMLLRNL 458 (833)
Q Consensus 383 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~ 458 (833)
+.+....++...+..+...+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++ |...++..+...+
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P 281 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS 281 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC
Confidence 6554332333344444555666666666666666666543 2234444445555555555543 4444444444322
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 003295 459 RPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTL 538 (833)
Q Consensus 459 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~l 538 (833)
. +..++..+...+.+.|++++|...+++..+..+ .+...+..+...+.+.|++++|...|+++.+.++. +...+..+
T Consensus 282 ~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~ 358 (656)
T PRK15174 282 D-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYA 358 (656)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHH
Confidence 1 233344444444444444444444444444321 13333444444444444444444444444433221 11122222
Q ss_pred HHHHHhcCChhhHHHHHHHHHH
Q 003295 539 ILGCCKDGKPEEGFKLKEDMIK 560 (833)
Q Consensus 539 i~~~~~~g~~~~A~~~~~~m~~ 560 (833)
..++...|+.++|...|++.++
T Consensus 359 a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 3334444444444444444444
No 24
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.85 E-value=1.3e-14 Score=150.14 Aligned_cols=584 Identities=11% Similarity=0.022 Sum_probs=353.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003295 199 FGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKM 278 (833)
Q Consensus 199 ~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 278 (833)
...|.-++....+.++. ++..|-+-...=-..|++..|..+...-++.++.+...|.-- ++....+.|..+....
T Consensus 267 ikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLea----iRLhp~d~aK~vvA~A 341 (913)
T KOG0495|consen 267 IKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEA----IRLHPPDVAKTVVANA 341 (913)
T ss_pred HHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHH----HhcCChHHHHHHHHHH
Confidence 45677788887777765 444555555555567888888887766665566666666433 3445566677777666
Q ss_pred HHcCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 003295 279 EELGIAPNVV-TYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNY 357 (833)
Q Consensus 279 ~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 357 (833)
.+. -|+.+ .|--.++. ..+...=.+++++..+. ++.++..|-.. +...+-++|+.++....+- -|.
T Consensus 342 vr~--~P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~-iP~sv~LWKaA----VelE~~~darilL~rAvec--cp~- 408 (913)
T KOG0495|consen 342 VRF--LPTSVRLWLKAADL---ESDTKNKKRVLRKALEH-IPRSVRLWKAA----VELEEPEDARILLERAVEC--CPQ- 408 (913)
T ss_pred HHh--CCCChhhhhhHHhh---hhHHHHHHHHHHHHHHh-CCchHHHHHHH----HhccChHHHHHHHHHHHHh--ccc-
Confidence 654 23332 22222111 12223334455555554 33344444433 3345555566666666653 221
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCCCcccHHHH
Q 003295 358 VVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEML----SRGLSINQGAYTSV 433 (833)
Q Consensus 358 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~----~~g~~~~~~~~~~l 433 (833)
-..|.-+|.+..-++.|.++++...+. ++-+...|.+-...--.+|+.+....++.+-. ..|+..+...|..=
T Consensus 409 --s~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~e 485 (913)
T KOG0495|consen 409 --SMDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKE 485 (913)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHH
Confidence 122333455666677777777776664 44466666666666666777776666665433 35666666677776
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003295 434 IKWLCINSRFNSALHFTKEMLLRNLRPGD--GLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAG 511 (833)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 511 (833)
...+-..|..-.+..+.+..+.-|+...+ .|+..-...|.+.+.++-|..+|...++. ++.+...|...+..--..|
T Consensus 486 Ae~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hg 564 (913)
T KOG0495|consen 486 AEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHG 564 (913)
T ss_pred HHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcC
Confidence 77777777777777777776666655433 45566666677777777777777776665 3445666766666666667
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003295 512 NLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWE 591 (833)
Q Consensus 512 ~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 591 (833)
..++-..+|++....-++ ....|......+-..|++..|..++.+..+.... +...|-+.+........++.|..+|.
T Consensus 565 t~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~lla 642 (913)
T KOG0495|consen 565 TRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLA 642 (913)
T ss_pred cHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHH
Confidence 777777777777665333 4555555566666677777777777777766444 55666666666677777777777777
Q ss_pred HHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC
Q 003295 592 ECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPT 671 (833)
Q Consensus 592 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 671 (833)
+.... .|+...|..-+....-.+..++|.+++++.++.-+. -.-.|..+.+.+-+.++.+.|.+.|..-.+. ++-.
T Consensus 643 kar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ 718 (913)
T KOG0495|consen 643 KARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNS 718 (913)
T ss_pred HHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCC
Confidence 76654 355556655555555567777777777777665322 3455666666777777777777777665544 2334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003295 672 SVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGG 751 (833)
Q Consensus 672 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 751 (833)
...|..|...-.+.|.+-+|..++++..-.+ +-+...|-..|..-.+.|+.+.|..+..++.+. ++.+...|..-|+.
T Consensus 719 ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~l 796 (913)
T KOG0495|consen 719 IPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWL 796 (913)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHh
Confidence 4455555566666677777777777776654 445666777777777777777777776666643 45555566666665
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 003295 752 YCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSLD-EITYTTLI 819 (833)
Q Consensus 752 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~ 819 (833)
.-+.++-..+...+++ +.-|+.+...+...+....++++|.++|++.++ +.|| ..+|..+.
T Consensus 797 e~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fy 858 (913)
T KOG0495|consen 797 EPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFY 858 (913)
T ss_pred ccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHH
Confidence 5555554444444433 334555555566666666666666666666665 3444 34444443
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=1.2e-16 Score=186.18 Aligned_cols=158 Identities=14% Similarity=0.038 Sum_probs=96.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 003295 223 FLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGR 302 (833)
Q Consensus 223 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 302 (833)
-.+......|+.++|+.+|.+.....+.+...+..+...+.+.|++++|.++|++..+..+ .+...+..++..+...|+
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCC
Confidence 3444455667777777777666532344455566666677777777777777777665421 134455566666666777
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 003295 303 LYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDD 382 (833)
Q Consensus 303 ~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~ 382 (833)
+++|+..+++..+.. +.+.. +..+...+...|+.++|...++++.+.... +...+..+...+.+.|..++|++.++.
T Consensus 99 ~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 99 YDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred HHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 777777777766552 23334 666666666777777777777777665222 344445556666666667777766665
Q ss_pred HH
Q 003295 383 MV 384 (833)
Q Consensus 383 m~ 384 (833)
..
T Consensus 176 ~~ 177 (765)
T PRK10049 176 AN 177 (765)
T ss_pred CC
Confidence 44
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=2.1e-15 Score=171.76 Aligned_cols=431 Identities=12% Similarity=0.044 Sum_probs=232.3
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChh
Q 003295 332 LIKLEKFDDANFVLKEMSVRGFVPNY--VVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMD 409 (833)
Q Consensus 332 ~~~~g~~~~A~~~~~~m~~~g~~p~~--~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 409 (833)
..+.|+++.|+..|++..+. .|+. ..+ .++..+...|+.++|+..+++..... .........+...+...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHH
Confidence 35666666666666666654 3332 122 55555666666666666666655210 111122222244555556666
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003295 410 NAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFRLF 489 (833)
Q Consensus 410 ~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 489 (833)
+|.++|+++.+.... +...+ ..++..+...++.++|++.++++.
T Consensus 120 ~Aiely~kaL~~dP~-n~~~l-----------------------------------~gLa~~y~~~~q~~eAl~~l~~l~ 163 (822)
T PRK14574 120 QALALWQSSLKKDPT-NPDLI-----------------------------------SGMIMTQADAGRGGVVLKQATELA 163 (822)
T ss_pred HHHHHHHHHHhhCCC-CHHHH-----------------------------------HHHHHHHhhcCCHHHHHHHHHHhc
Confidence 666666666654322 23333 344444555555555555555554
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHH
Q 003295 490 EKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYT 569 (833)
Q Consensus 490 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 569 (833)
... |+...+..++..+...++..+|++.++++.+.++. +...+..+...+.+.|-...|.++..+-... +.+....
T Consensus 164 ~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~ 239 (822)
T PRK14574 164 ERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYR 239 (822)
T ss_pred ccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHH
Confidence 432 22223333333333334444455555555555433 4455555555555555555555444432111 1100000
Q ss_pred ------HHHHHHHH-----HhcC---CHHHHHHHHHHHhhCC-CCCC-HhhH-H---HHHHHHHccCCHHHHHHHHHHHH
Q 003295 570 ------YNLLLHGL-----CSLG---KMEEAIELWEECKRTV-FGPD-IYTY-G---VMIDGFCKADKIEEGETLFNEMI 629 (833)
Q Consensus 570 ------~~~li~~~-----~~~g---~~~~A~~~~~~~~~~~-~~~~-~~~~-~---~li~~~~~~g~~~~A~~~~~~~~ 629 (833)
....++.- .... -.+.|+.-++.+...- -.|. ...| . -.+-++.+.|++.++++.|+.+.
T Consensus 240 ~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~ 319 (822)
T PRK14574 240 QLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAME 319 (822)
T ss_pred HHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 00000000 0011 1233444444444311 1122 1111 1 22345666777777777777777
Q ss_pred HCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-
Q 003295 630 SKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRG-----ILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGL- 703 (833)
Q Consensus 630 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~- 703 (833)
..+.+....+-..+.++|...+++++|+.+++.+.... ..++......|..++...+++++|..+++++.+.--
T Consensus 320 ~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~ 399 (822)
T PRK14574 320 AEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPY 399 (822)
T ss_pred hcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc
Confidence 76655455566777777777777777777777775532 122333346677777777777777777777776310
Q ss_pred ----------CCCh---hHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 704 ----------LPNV---ACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 704 ----------~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
.||. ..+..++..+...|++.+|++.++++.... |-|......+...+...|++.+|.+.++.+..
T Consensus 400 ~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 400 QVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred EEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 1221 123345566677778888888888777654 66777777777778888888888887766555
Q ss_pred cCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC
Q 003295 771 KGISP-DSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSLD 811 (833)
Q Consensus 771 ~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 811 (833)
+.| +..+....+.++...|++++|..+.+.+.+ ..|+
T Consensus 479 --l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe 516 (822)
T PRK14574 479 --LAPRSLILERAQAETAMALQEWHQMELLTDDVIS--RSPE 516 (822)
T ss_pred --hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCC
Confidence 345 445666777777777888888777777766 4455
No 27
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=3.8e-16 Score=181.89 Aligned_cols=395 Identities=11% Similarity=0.037 Sum_probs=181.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChh
Q 003295 330 NGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMD 409 (833)
Q Consensus 330 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 409 (833)
......|+.++|+.++.+..... ..+...+..+...+.+.|++++|.+++++..+..+. +...+..++..+.+.|+++
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHH
Confidence 33444556666665555555411 223334555555555666666666666555543211 3334445555555555555
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003295 410 NAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFRLF 489 (833)
Q Consensus 410 ~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 489 (833)
+|...++++.+.. +.+.. + ..+...+...|+.++|...++++.
T Consensus 101 eA~~~l~~~l~~~-P~~~~-~-----------------------------------~~la~~l~~~g~~~~Al~~l~~al 143 (765)
T PRK10049 101 EALVKAKQLVSGA-PDKAN-L-----------------------------------LALAYVYKRAGRHWDELRAMTQAL 143 (765)
T ss_pred HHHHHHHHHHHhC-CCCHH-H-----------------------------------HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555555441 11222 3 344444445555555555555555
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH------HHHHHHHHHHH-----hcCCh---hhHHHHH
Q 003295 490 EKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDK------VTYNTLILGCC-----KDGKP---EEGFKLK 555 (833)
Q Consensus 490 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~ 555 (833)
+..+. +...+..+...+...+..++|+..++.... .|+. .....++.... ..+++ ++|++.+
T Consensus 144 ~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 144 PRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQY 219 (765)
T ss_pred HhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHH
Confidence 54222 444444455555555666666665554433 1110 00111111111 11122 4556666
Q ss_pred HHHHHC-CCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 003295 556 EDMIKR-GIQPDNY-TY----NLLLHGLCSLGKMEEAIELWEECKRTVFG-PDIYTYGVMIDGFCKADKIEEGETLFNEM 628 (833)
Q Consensus 556 ~~m~~~-g~~p~~~-~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 628 (833)
+.+++. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|+..|+++
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~ 298 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTEL 298 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 666543 1122111 11 01122334456666666666666554321 221 1111344556666666666666665
Q ss_pred HHCCCcc---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhcCCHHHH
Q 003295 629 ISKKMEL---NPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGI-----------LPT---SVTYSSLIHGLCNIGLIEDA 691 (833)
Q Consensus 629 ~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A 691 (833)
.+..+.. ....+..+..++.+.|++++|.+.++.+.+... .|+ ...+..+...+...|+.++|
T Consensus 299 l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 299 FYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred hhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 5432211 123344444455566666666666665554321 011 11223334444455555555
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 692 KCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 692 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
++.++++.... +.+...+..++..+...|++++|++.+++..+.. +.+...+..++..+...|++++|...++++++
T Consensus 379 ~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 379 EMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55555554431 2234444455555555555555555555555432 22233444444445555555555555555554
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.82 E-value=4.6e-13 Score=138.84 Aligned_cols=544 Identities=14% Similarity=0.079 Sum_probs=403.0
Q ss_pred hcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhHHHH
Q 003295 230 KANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPN-VVTYNNIIHGLCRNGRLYEAFH 308 (833)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~ 308 (833)
+....+.|..+.....+-.|.++..|.-.+. -..+...-.+++.+.++. -|+ +..|-..+ ...+.+.|+.
T Consensus 327 RLhp~d~aK~vvA~Avr~~P~Sv~lW~kA~d---LE~~~~~K~RVlRKALe~--iP~sv~LWKaAV----elE~~~dari 397 (913)
T KOG0495|consen 327 RLHPPDVAKTVVANAVRFLPTSVRLWLKAAD---LESDTKNKKRVLRKALEH--IPRSVRLWKAAV----ELEEPEDARI 397 (913)
T ss_pred hcCChHHHHHHHHHHHHhCCCChhhhhhHHh---hhhHHHHHHHHHHHHHHh--CCchHHHHHHHH----hccChHHHHH
Confidence 3345566777776666555555655533222 233445556677777764 244 44444433 3456666888
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH----H
Q 003295 309 LKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDM----V 384 (833)
Q Consensus 309 ~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m----~ 384 (833)
++.+..+. ++.+.. |.-+|.+..-|+.|..+++...+. +..+...|.+-...--.+|+.+...+++++- .
T Consensus 398 lL~rAvec-cp~s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~ 471 (913)
T KOG0495|consen 398 LLERAVEC-CPQSMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQ 471 (913)
T ss_pred HHHHHHHh-ccchHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 88888764 333333 334556777888888888888765 4446777777777777888888888777654 3
Q ss_pred hCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 003295 385 SKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSI--NQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGD 462 (833)
Q Consensus 385 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 462 (833)
..|+..+...|..=...+-+.|..--+..+....+..|+.- -..+|+.-...|.+.+.++-|..+|...++..+. +.
T Consensus 472 ~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~-k~ 550 (913)
T KOG0495|consen 472 ANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC-KK 550 (913)
T ss_pred hcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc-hh
Confidence 46777777777777777777788888888888887776642 3467888888888888888888888887765433 34
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003295 463 GLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGC 542 (833)
Q Consensus 463 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~ 542 (833)
..+...+..--..|..++-..++++.+.. ++.....|......+-..|++..|..++.+..+.++. +...|-.-+..-
T Consensus 551 slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle 628 (913)
T KOG0495|consen 551 SLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLE 628 (913)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHh
Confidence 45555666666778888888899988887 4446777888888888889999999999999888766 788888888888
Q ss_pred HhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHccCCHHHH
Q 003295 543 CKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPD-IYTYGVMIDGFCKADKIEEG 621 (833)
Q Consensus 543 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A 621 (833)
..+..++.|..+|.+.... .|+...|.--+...--.++.++|++++++..+. -|+ ...|..+.+.+-+.++++.|
T Consensus 629 ~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~a 704 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMA 704 (913)
T ss_pred hccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHH
Confidence 8899999999999988775 456666666666666678899999999888875 344 55677888888899999999
Q ss_pred HHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003295 622 ETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKE 701 (833)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 701 (833)
.+.|..-.+.-+. .+..|-.+...--+.|.+-.|..++++..-++ +-+...|...|..-.+.|+.+.|..+..++++.
T Consensus 705 R~aY~~G~k~cP~-~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 705 REAYLQGTKKCPN-SIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHHHHhccccCCC-CchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9888877665333 66788888888888899999999999988776 447788888999999999999999999888876
Q ss_pred CCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHH
Q 003295 702 GLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPD-SITY 780 (833)
Q Consensus 702 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~ 780 (833)
++.+...|..-|....+.++-..+...+++ +.-|+....++...+....++++|.+.|.+.+.. .|| -.+|
T Consensus 783 -cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~w 854 (913)
T KOG0495|consen 783 -CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAW 854 (913)
T ss_pred -CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHH
Confidence 455667777777777666665554444443 3557777788888888899999999999999885 354 4678
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 781 NVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 781 ~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
.-+..-+...|.-+.-.+++.....
T Consensus 855 a~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 855 AWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 8888888889988888888887776
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=1.1e-14 Score=165.93 Aligned_cols=443 Identities=14% Similarity=0.086 Sum_probs=269.4
Q ss_pred hhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 003295 194 FKNLGFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIG 273 (833)
Q Consensus 194 ~~~~~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 273 (833)
++.|++..|++.|++..+..+.-....+ .++..+...|+.++|+..+++.....+.+......+...+...|++++|.+
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4789999999999998877655222333 788888888999999999999973223334444445678888899999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 003295 274 LFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGF 353 (833)
Q Consensus 274 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 353 (833)
+|+++.+..+. |...+..++..+...|+.++|++.++++... .|+...+..++..+...++..+|++.++++.+.
T Consensus 124 ly~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~-- 198 (822)
T PRK14574 124 LWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL-- 198 (822)
T ss_pred HHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh--
Confidence 99999987544 4666777888889999999999999999876 566666655555555566776799999999987
Q ss_pred CC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHH
Q 003295 354 VP-NYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTS 432 (833)
Q Consensus 354 ~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~ 432 (833)
.| +...+..+...+.+.|-...|.++..+- |+.++-...... +.+.|.+..+.. ..++..- .
T Consensus 199 ~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~~~a~~vr~a----~~~~~~~-~- 261 (822)
T PRK14574 199 APTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERDAAAEQVRMA----VLPTRSE-T- 261 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHHHHHHHHhhc----ccccccc-h-
Confidence 34 4667778888888999988888777653 332221111100 001111111100 0000000 0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC-CCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003295 433 VIKWLCINSRFNSALHFTKEMLLR-NLRPGD-----GLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHG 506 (833)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 506 (833)
-+.--.+.|+.-+..+... +..|.. ....-.+-++...|+..++++.++.+...+.+....+--.+.++
T Consensus 262 -----~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ada 336 (822)
T PRK14574 262 -----ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASA 336 (822)
T ss_pred -----hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence 0000122233333333321 111211 11112233555566666666666666665544444555566666
Q ss_pred HHhcCCHHHHHHHHHHHhhCC-----CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCC-------------CCCCHH
Q 003295 507 MCEAGNLKEAGKLLMEMLQRG-----LILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRG-------------IQPDNY 568 (833)
Q Consensus 507 ~~~~g~~~~A~~~l~~m~~~g-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------~~p~~~ 568 (833)
|...++.++|..+++++.... ..++......|..++...+++++|..+++.+.+.. ..||-.
T Consensus 337 yl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~ 416 (822)
T PRK14574 337 YIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI 416 (822)
T ss_pred HHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH
Confidence 666666666666666664432 12233334556666666666666666666666521 112222
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHH
Q 003295 569 -TYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAY 647 (833)
Q Consensus 569 -~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 647 (833)
.+..++..+...|+..+|.+.++++.... +-|......+.+.+...|.+.+|++.++......+. +..+....+.++
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~a 494 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAETA 494 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHH
Confidence 23334555666777777777777775543 446666667777777777777777777665555333 556666666666
Q ss_pred HHcCChHHHHHHHHHHHhC
Q 003295 648 CKIGNTTAAFRLSNDMKSR 666 (833)
Q Consensus 648 ~~~g~~~~A~~~~~~m~~~ 666 (833)
...|++.+|..+.+.+.+.
T Consensus 495 l~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 495 MALQEWHQMELLTDDVISR 513 (822)
T ss_pred HhhhhHHHHHHHHHHHHhh
Confidence 7777777777777776665
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.81 E-value=2.6e-14 Score=154.12 Aligned_cols=372 Identities=15% Similarity=0.076 Sum_probs=270.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 003295 219 KTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLC 298 (833)
Q Consensus 219 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 298 (833)
...-...+.+...|++++|.+++.++++-.+.+...|..+...|-+.|+.+++...+-..--..+. |..-|-.+.....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~ 218 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Confidence 333344444555699999999999999878889999999999999999999999888777655433 6688999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh----hHHHHHHHHHHcCChH
Q 003295 299 RNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYV----VYNTLIDGYCKKGNIS 374 (833)
Q Consensus 299 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~y~~li~~~~~~g~~~ 374 (833)
+.|++++|.-.|.++++.. +++...+-.-...|-+.|+...|..-|.++.......|.. .--..+..+...++-+
T Consensus 219 ~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred hcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999874 3444444455677889999999999999999874322222 2223456677788889
Q ss_pred HHHHHHHHHHhCC-CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc----------------------ccHH
Q 003295 375 EALKIRDDMVSKG-MSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQ----------------------GAYT 431 (833)
Q Consensus 375 ~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~----------------------~~~~ 431 (833)
.|.+.++.....+ -.-+...++.++..|.+...++.|......+..+...+|. ..|.
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 9999998887732 1225567889999999999999999988888763222221 1111
Q ss_pred ----HHHHHHHhcCChhHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003295 432 ----SVIKWLCINSRFNSALHFTKEMLLRN--LRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIH 505 (833)
Q Consensus 432 ----~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 505 (833)
-+.-++.+....+....+..-....+ +.-+...|.-+..+|...|++.+|..++..+.......+...|-.+..
T Consensus 378 l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 378 LRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred chhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 12223333444444444455555555 344556788888899999999999999999888766667888999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC--------CCCCCHHHHHHHHHHH
Q 003295 506 GMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKR--------GIQPDNYTYNLLLHGL 577 (833)
Q Consensus 506 ~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~p~~~~~~~li~~~ 577 (833)
+|...|.+++|.+.+.......+. +...-.+|...+-+.|+.++|.+.++.+..- +..|+........+.+
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 999999999999999998887554 5566667777888899999999988886522 2334444444455566
Q ss_pred HhcCCHHHHHHHHHHH
Q 003295 578 CSLGKMEEAIELWEEC 593 (833)
Q Consensus 578 ~~~g~~~~A~~~~~~~ 593 (833)
.+.|+.++-...-..|
T Consensus 537 ~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 537 FQVGKREEFINTASTL 552 (895)
T ss_pred HHhhhHHHHHHHHHHH
Confidence 6777766644444333
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=1.9e-14 Score=141.59 Aligned_cols=361 Identities=17% Similarity=0.174 Sum_probs=183.5
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 003295 391 NSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVS 470 (833)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 470 (833)
...+|.++|.++||-...+.|.+++++........+..+||.+|.+-.-. ...+++.+|....++||..|+++++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 33455555555555555555555555555544444555555554432111 11334444444444444444444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhh
Q 003295 471 GLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEE 550 (833)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 550 (833)
+..+.|+++.|. ..|.+++.+|++.|+.|...+|..+|..+++.++..+
T Consensus 282 c~akfg~F~~ar-------------------------------~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k 330 (625)
T KOG4422|consen 282 CAAKFGKFEDAR-------------------------------KAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK 330 (625)
T ss_pred HHHHhcchHHHH-------------------------------HHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh
Confidence 444444333221 1234455566666666666666666666666555432
Q ss_pred -HHHHHHHHHHC----CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC----CCCC---HhhHHHHHHHHHc
Q 003295 551 -GFKLKEDMIKR----GIQP----DNYTYNLLLHGLCSLGKMEEAIELWEECKRTV----FGPD---IYTYGVMIDGFCK 614 (833)
Q Consensus 551 -A~~~~~~m~~~----g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~li~~~~~ 614 (833)
|..++.++... .++| |...|...+..|.+..+.+-|.++..-..... +.|+ ..-|..+....|+
T Consensus 331 ~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq 410 (625)
T KOG4422|consen 331 VASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQ 410 (625)
T ss_pred hhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHH
Confidence 33333333321 1111 33445555666666666666666655443211 1222 2234555666666
Q ss_pred cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--------
Q 003295 615 ADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIG-------- 686 (833)
Q Consensus 615 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-------- 686 (833)
...++.-...++.|+-.-.-|+..+...++.+..-.|+++-.-+++.+++..|..-....-..++..+++..
T Consensus 411 ~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r 490 (625)
T KOG4422|consen 411 MESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPER 490 (625)
T ss_pred HHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHH
Confidence 666666666676666665666666666666666666666666666666665553333333333333333221
Q ss_pred ------------CH-HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCC----CCCHHHHHHHH
Q 003295 687 ------------LI-EDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINI----HPNKITYTIMI 749 (833)
Q Consensus 687 ------------~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~~~li 749 (833)
++ +....--.+|.+.. ......+.+.-.+.+.|..++|.+++.-+.+.+- .|.......++
T Consensus 491 ~Ql~~~~ak~aad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~ 568 (625)
T KOG4422|consen 491 EQLQVAFAKCAADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELM 568 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHH
Confidence 01 11111122333332 3344556666677788888888888887754331 23333334555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 003295 750 GGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHC 788 (833)
Q Consensus 750 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 788 (833)
+.-...+....|+..++-|...+...-...-+.+...|.
T Consensus 569 d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~ 607 (625)
T KOG4422|consen 569 DSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFA 607 (625)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcC
Confidence 666667777777777777766543222223334444443
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=2.3e-14 Score=141.15 Aligned_cols=444 Identities=16% Similarity=0.163 Sum_probs=226.7
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh---HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHH
Q 003295 195 KNLGFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQ---KGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDA 271 (833)
Q Consensus 195 ~~~~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 271 (833)
..|.+.++.-+|++|.+.|...+...-..|+..-+-.+.-+ .-++.|-.|...-..+..+| +.|.+.+
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--------K~G~vAd- 197 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--------KSGAVAD- 197 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc--------ccccHHH-
Confidence 35667777777888877777666666555554433222211 22333333431112223333 3444433
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003295 272 IGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVR 351 (833)
Q Consensus 272 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 351 (833)
-+|+...+ +..+|..+|.|+|+--..+.|.+++++......+-+..++|.+|.+-. +.....++.+|...
T Consensus 198 -L~~E~~PK-----T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisq 267 (625)
T KOG4422|consen 198 -LLFETLPK-----TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQ 267 (625)
T ss_pred -HHHhhcCC-----CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHh
Confidence 23333322 445666666666666666666666666665555556666666654321 22225566666666
Q ss_pred CCCCChhhHHHHHHHHHHcCChHHH----HHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhH-HHHHHHHHHHCCCCCC
Q 003295 352 GFVPNYVVYNTLIDGYCKKGNISEA----LKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDN-AENALEEMLSRGLSIN 426 (833)
Q Consensus 352 g~~p~~~~y~~li~~~~~~g~~~~A----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~l~~~~~~g~~~~ 426 (833)
.+.||..|+|+++.+..+.|+++.| .+++.+|++-|+.|...+|..+|..+++.++..+ |..++.++..
T Consensus 268 km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N------ 341 (625)
T KOG4422|consen 268 KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN------ 341 (625)
T ss_pred hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH------
Confidence 6666666666666666666655443 3455566666666666666666666665554432 2222222211
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003295 427 QGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHG 506 (833)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 506 (833)
.+..+..+|-. +.|..-+...++.
T Consensus 342 -------------------------~ltGK~fkp~~-------------------------------p~d~~FF~~AM~I 365 (625)
T KOG4422|consen 342 -------------------------SLTGKTFKPIT-------------------------------PTDNKFFQSAMSI 365 (625)
T ss_pred -------------------------hhccCcccCCC-------------------------------CchhHHHHHHHHH
Confidence 11111111111 0112222223333
Q ss_pred HHhcCCHHHHHHHHHHHhhCC----CCC---CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003295 507 MCEAGNLKEAGKLLMEMLQRG----LIL---DKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCS 579 (833)
Q Consensus 507 ~~~~g~~~~A~~~l~~m~~~g----~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 579 (833)
|.+..+.+-|.++-.-+.... +.| ..+-|..+....|.....+.-..+|+.|+-.-.-|+..+...++++...
T Consensus 366 c~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v 445 (625)
T KOG4422|consen 366 CSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDV 445 (625)
T ss_pred HHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhh
Confidence 333344444433332222110 111 1233455666677777777777777777776666777777777777777
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHc-CCh-HHHH
Q 003295 580 LGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKI-GNT-TAAF 657 (833)
Q Consensus 580 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~-~~A~ 657 (833)
.|.++-.-++|..++..|..-+.... ++++..+....+.|+...-..+-.+..+. -++ +...
T Consensus 446 ~~~~e~ipRiw~D~~~~ght~r~~l~----------------eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e 509 (625)
T KOG4422|consen 446 ANRLEVIPRIWKDSKEYGHTFRSDLR----------------EEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYE 509 (625)
T ss_pred cCcchhHHHHHHHHHHhhhhhhHHHH----------------HHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777766543332222 22223333332223212111111111111 011 1112
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhHHH---HHHHHHHhcCChhHHHHHHHHH
Q 003295 658 RLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEG-LLPNVACYT---ALIGGYCKLGQMDEAESVLQEM 733 (833)
Q Consensus 658 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~---~li~~~~~~g~~~~A~~~~~~m 733 (833)
..-.+|.+... .....+.+.-.+.+.|+.++|.++|.-..+++ -.|-....| -+++.-.+.+....|...++-|
T Consensus 510 ~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 510 SQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred hhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 22234444433 44456666667788888899988888886543 233334444 3445555667788888888888
Q ss_pred HhCC
Q 003295 734 ASIN 737 (833)
Q Consensus 734 ~~~g 737 (833)
...+
T Consensus 588 ~~~n 591 (625)
T KOG4422|consen 588 SAFN 591 (625)
T ss_pred HHcC
Confidence 6654
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=4.2e-12 Score=126.96 Aligned_cols=162 Identities=13% Similarity=0.092 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 003295 218 LKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGL 297 (833)
Q Consensus 218 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 297 (833)
...|-.-...=..++++..|..+|++++.+...+...|...+..=.++..+..|+.++++....-+..|. .|-..+.+-
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymE 151 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHH
Confidence 3334333333334445555555555555444455555555555555555555555555555443222121 223333333
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHH
Q 003295 298 CRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEAL 377 (833)
Q Consensus 298 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~ 377 (833)
-..|++..|+++|++-.+ .+|+...|++.|+.-.+.+.++.|..+++...-. .|++.+|---+..-.++|...-|.
T Consensus 152 E~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHH
Confidence 344555555555554443 2455555555555444444555555555444432 344444444444444444444444
Q ss_pred HHHHHHH
Q 003295 378 KIRDDMV 384 (833)
Q Consensus 378 ~~~~~m~ 384 (833)
.+|+...
T Consensus 228 ~VyerAi 234 (677)
T KOG1915|consen 228 SVYERAI 234 (677)
T ss_pred HHHHHHH
Confidence 4444443
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=1e-13 Score=137.29 Aligned_cols=281 Identities=14% Similarity=0.062 Sum_probs=209.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--cCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003295 504 IHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCK--DGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLG 581 (833)
Q Consensus 504 i~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 581 (833)
..-|.++|+++.|++++.-..+..-..-...-+.|-..+.- ..++..|...-+..+...- -+....+.-.+.....|
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecC
Confidence 34578999999999999988877433223333333322222 3457778777777765421 13333333334445579
Q ss_pred CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHH
Q 003295 582 KMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSN 661 (833)
Q Consensus 582 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 661 (833)
++++|.+.|++.......-....|| +.-.+-+.|++++|++.|-++...- ..+..+...+.+.|.-..+...|++++.
T Consensus 505 d~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 9999999999998753222222232 2334667899999999998775432 2377788888899999999999999998
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 003295 662 DMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPN 741 (833)
Q Consensus 662 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 741 (833)
+.... ++.|+.....|...|-+.|+-.+|.+.+-+--+. ++-+..+...|..-|....-+++|+.+|++..- +.|+
T Consensus 583 q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~ 658 (840)
T KOG2003|consen 583 QANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPN 658 (840)
T ss_pred Hhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCcc
Confidence 87765 5678889999999999999999999887766554 466888888888888888899999999999875 6899
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCC
Q 003295 742 KITYTIMIGGY-CKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGN 792 (833)
Q Consensus 742 ~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 792 (833)
..-|..++..| .+.|++.+|.++++....+ ++.|.....-|++.+...|.
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 99999887664 5789999999999998876 67788888889998887775
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=3.9e-14 Score=140.16 Aligned_cols=474 Identities=14% Similarity=0.110 Sum_probs=314.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh------hhHHHHH
Q 003295 257 TAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTY-NNIIHGLCRNGRLYEAFHLKEKMVLREVEPSL------ITYSILI 329 (833)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~t~~~li 329 (833)
.+..-|..+....+|+..++-+.+....||.-.. -.+.+.+.+..++.+|+++++-...+ .|++ ...+.+.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil~nig 283 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHHhhcC
Confidence 3555677777788999999888877666775433 23556678888999999988777664 2332 2344455
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC------------ChhHHHH
Q 003295 330 NGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSP------------NSVTFNS 397 (833)
Q Consensus 330 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p------------~~~~~~~ 397 (833)
..|.+.|++++|+.-|+...+. .||..+-..|+-++..-|+-++..+.|.+|+.--..| +....+.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 5678899999999999988776 6787766666666777899999999999988643222 3222222
Q ss_pred HHH-----HHHhcCChhHHHHHHH---HHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHH
Q 003295 398 LIH-----GFCKSGQMDNAENALE---EMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLV 469 (833)
Q Consensus 398 li~-----~~~~~g~~~~A~~~l~---~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 469 (833)
-|. -.-+. +-..|.+..- +++..-+.|+- ..- .+..++.++.-...... ...-..-.
T Consensus 362 ai~nd~lk~~ek~-~ka~aek~i~ta~kiiapvi~~~f---a~g---------~dwcle~lk~s~~~~la--~dlei~ka 426 (840)
T KOG2003|consen 362 AIKNDHLKNMEKE-NKADAEKAIITAAKIIAPVIAPDF---AAG---------CDWCLESLKASQHAELA--IDLEINKA 426 (840)
T ss_pred HHhhHHHHHHHHh-hhhhHHHHHHHHHHHhccccccch---hcc---------cHHHHHHHHHhhhhhhh--hhhhhhHH
Confidence 221 11111 1111222211 11111111111 110 11122222211110000 00111223
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 003295 470 SGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCE--AGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGK 547 (833)
Q Consensus 470 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~ 547 (833)
..+.+.|+++.|.+++.-+.++.-......-|.|-..+.- -.++.+|...-+......-- +......-.+.....|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCc
Confidence 4578999999999999988876444333334444333332 34677777776666544211 33333222333445789
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 003295 548 PEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNE 627 (833)
Q Consensus 548 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 627 (833)
+++|.+.+++.+...-.- ...+..+.-.+-..|++++|++.|-.+... ...+..+...+...|....+...|++++.+
T Consensus 506 ~dka~~~ykeal~ndasc-~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred HHHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 999999999998763221 112222333567789999999999876542 234667777888999999999999999988
Q ss_pred HHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 003295 628 MISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNV 707 (833)
Q Consensus 628 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 707 (833)
.... ++.|+.....+...|-+.|+...|++.+-+-... ++-+..+...|..-|....-+++|+.+|++..- +.|+.
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~ 659 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQ 659 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccH
Confidence 8766 3448999999999999999999999988766554 566888888899999999999999999999876 68999
Q ss_pred hHHHHHHHH-HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003295 708 ACYTALIGG-YCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGD 757 (833)
Q Consensus 708 ~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 757 (833)
.-|..++.. +.+.|++.+|..+++....+ ++-|..+..-|++.+...|-
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 999988755 45689999999999999876 68899999999998887774
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=1.5e-11 Score=123.14 Aligned_cols=443 Identities=13% Similarity=0.068 Sum_probs=288.2
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 003295 195 KNLGFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGL 274 (833)
Q Consensus 195 ~~~~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 274 (833)
..+++..|..+|++.+.-+.. +...|..-+..=.++..+..|..++++++.-.|.-...|...+..=-..|++..|+++
T Consensus 85 sq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 345677899999998876644 7888888999999999999999999999865555556677777777788999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 003295 275 FTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFV 354 (833)
Q Consensus 275 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 354 (833)
|++-.+ ++|+...|++.|+.-.+-.+++.|+.++++..- +.|++.+|-.....--+.|+..-|..+++...+. .
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~ 237 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--L 237 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--h
Confidence 999876 489999999999999999999999999999886 4799999999999889999999999999988764 1
Q ss_pred CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcc
Q 003295 355 PN----YVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPN--SVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQG 428 (833)
Q Consensus 355 p~----~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~ 428 (833)
.| ...+.+....-.++..++.|.-+|.-.++.=++ + ...|..+...--+.|+........-.=.+
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk-~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk-------- 308 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPK-GRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK-------- 308 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh--------
Confidence 12 234444444445667778888888777765222 2 23344333333344554433322110000
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHH----
Q 003295 429 AYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNT-VTSNAL---- 503 (833)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~l---- 503 (833)
--+..++..+ .-|-.++-..++.....|+.+...+++++.+..-++.+. ..|.-.
T Consensus 309 -------------------~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLW 368 (677)
T KOG1915|consen 309 -------------------FQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLW 368 (677)
T ss_pred -------------------hHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHH
Confidence 0011122221 123344445555555566666666666666655322211 111111
Q ss_pred ----HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH----HHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003295 504 ----IHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILG----CCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLH 575 (833)
Q Consensus 504 ----i~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 575 (833)
+-.-....+.+.+.++++..++. ++-..+||..+=-. -.++.++..|.+++...+ |..|-..+|...|.
T Consensus 369 inYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIe 445 (677)
T KOG1915|consen 369 INYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIE 445 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHH
Confidence 11122456677777777777663 22244454443222 335667777777777665 34666777777777
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-CccCHHHHHHHHHHHHHcCChH
Q 003295 576 GLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKK-MELNPVVYNTLIRAYCKIGNTT 654 (833)
Q Consensus 576 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~ 654 (833)
.-.+.++++.+..+++..++-+ +.+..+|......-...|+.+.|..+|+-.++.. .......|.+.|+.-...|.++
T Consensus 446 lElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~e 524 (677)
T KOG1915|consen 446 LELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFE 524 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHH
Confidence 7777777777777777777654 3456667666666667777777777777766542 2223456667777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHH
Q 003295 655 AAFRLSNDMKSRGILPTSVTYSSLI 679 (833)
Q Consensus 655 ~A~~~~~~m~~~~~~p~~~~~~~li 679 (833)
.|..+++++++. .+...+|.++.
T Consensus 525 kaR~LYerlL~r--t~h~kvWisFA 547 (677)
T KOG1915|consen 525 KARALYERLLDR--TQHVKVWISFA 547 (677)
T ss_pred HHHHHHHHHHHh--cccchHHHhHH
Confidence 777777777765 23334454443
No 37
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.64 E-value=3.2e-12 Score=137.23 Aligned_cols=557 Identities=15% Similarity=0.137 Sum_probs=300.1
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh-cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 003295 207 SIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMC-RGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAP 285 (833)
Q Consensus 207 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 285 (833)
-.+...|+.|+-+||..+|..|+..|+.+.|- +|.-|. +..+.+...|+.++.+..+.|+.+.+. +|
T Consensus 14 a~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep 81 (1088)
T KOG4318|consen 14 ALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EP 81 (1088)
T ss_pred HHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CC
Confidence 34567899999999999999999999999998 999998 778888899999999999999988887 57
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHH-HHh-------CCCCCChh-h-------------HHHHHHHHHhcCChhHHHH
Q 003295 286 NVVTYNNIIHGLCRNGRLYEAFHLKEK-MVL-------REVEPSLI-T-------------YSILINGLIKLEKFDDANF 343 (833)
Q Consensus 286 ~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~-------~~~~p~~~-t-------------~~~li~~~~~~g~~~~A~~ 343 (833)
-..||..|..+|...|++.- ++..++ |.. .|+-.-+. . -...+.-..-.|-++.+.+
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999998765 332222 211 11110000 0 1112222333444444454
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHHc-CChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003295 344 VLKEMSVRGFVPNYVVYNTLIDGYCKK-GNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRG 422 (833)
Q Consensus 344 ~~~~m~~~g~~p~~~~y~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g 422 (833)
++..+...... . +....+.-.... ..+++-..+.....+ .|+..+|..+++.-...|+.+.|..++.+|.+.|
T Consensus 161 ll~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 161 LLAKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHhhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 44444321100 0 111112222221 223333333333332 5899999999999999999999999999999999
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HH
Q 003295 423 LSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVN----TV 498 (833)
Q Consensus 423 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~ 498 (833)
++.+.+.|..++-+ .+...-+..+++-|...|+.|+..|+...+..+.++|....+.+ |.+.+ ..
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e--------~sq~~hg~tAa 303 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE--------GSQLAHGFTAA 303 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc--------ccchhhhhhHH
Confidence 99999999998877 77888888999999999999999999988888887666433332 22211 22
Q ss_pred HHHHHHHHHHhcCCHH-----HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCC--CC-CHHHH
Q 003295 499 TSNALIHGMCEAGNLK-----EAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGI--QP-DNYTY 570 (833)
Q Consensus 499 ~~~~li~~~~~~g~~~-----~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p-~~~~~ 570 (833)
.+..+..+.....+++ -....+.+..-.|.......|...+.. ..+|+-++..++-..|..--. .+ ++..|
T Consensus 304 vrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~ 382 (1088)
T KOG4318|consen 304 VRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAF 382 (1088)
T ss_pred HHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHH
Confidence 2333333322222221 112222222223444334444433333 336777777777777654211 11 33344
Q ss_pred HHHHHHHHhcCCHHHHHHHHH--HHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC----CCc-------cCH
Q 003295 571 NLLLHGLCSLGKMEEAIELWE--ECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISK----KME-------LNP 637 (833)
Q Consensus 571 ~~li~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-------~~~ 637 (833)
..++.-|.+.-+..-...++. +..+.. .+....-.++....+. +...+.+-+...... ... +-.
T Consensus 383 ~~~lrqyFrr~e~~~~~~i~~~~qgls~~--l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~ir 459 (1088)
T KOG4318|consen 383 GALLRQYFRRIERHICSRIYYAGQGLSLN--LNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIR 459 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhh--hchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHH
Confidence 444444433211111111111 111000 0000000011111000 111111111111100 000 011
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChhHHHHHHH
Q 003295 638 VVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKE--GLLPNVACYTALIG 715 (833)
Q Consensus 638 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~ 715 (833)
..-+.++..++..-+..+++..-+.....- .+ ..|..||+-++...+.+.|..+.++.... .+..|...+..+.+
T Consensus 460 di~~ql~l~l~se~n~lK~l~~~ekye~~l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~d 536 (1088)
T KOG4318|consen 460 DIANQLHLTLNSEYNKLKILCDEEKYEDLL-FA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQD 536 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHH
Confidence 223344445555545555544333333221 11 34666666666666666666666665432 22334445566666
Q ss_pred HHHhcCChhHHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCH
Q 003295 716 GYCKLGQMDEAESVLQEMASIN-IHPN-KITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNV 793 (833)
Q Consensus 716 ~~~~~g~~~~A~~~~~~m~~~g-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 793 (833)
.+.+.+....+.++++++.+.- ..|+ ..++..+.......|+.+...++++-+...|+..+ .-++....+.++.
T Consensus 537 LL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~ 612 (1088)
T KOG4318|consen 537 LLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQ 612 (1088)
T ss_pred HHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccch
Confidence 6666666666666666665421 1222 23444455555566666666666655555544321 1222333445555
Q ss_pred HHHHHHHHHHH
Q 003295 794 EEAFKVCDRML 804 (833)
Q Consensus 794 ~~A~~~~~~m~ 804 (833)
..|.++++...
T Consensus 613 s~a~ea~e~~~ 623 (1088)
T KOG4318|consen 613 SAAQEAPEPEE 623 (1088)
T ss_pred hhhhhcchHHH
Confidence 55555554443
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=3.1e-12 Score=128.69 Aligned_cols=217 Identities=17% Similarity=0.163 Sum_probs=118.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHH
Q 003295 580 LGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRL 659 (833)
Q Consensus 580 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 659 (833)
.|+.-.|.+-|+..++....++ ..|-.+..+|...++.++....|++..+..+. |+.+|..-...+.-.+++++|..-
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence 4555566666666655432222 12444555566666666666666666655544 555555555555556666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 003295 660 SNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIH 739 (833)
Q Consensus 660 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 739 (833)
|++.+... +.+...|.-+.-+..+.+++++++..|++.+++ ++--+..|+.....+...+++++|.+.|+..++. .
T Consensus 417 F~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E 492 (606)
T KOG0547|consen 417 FQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--E 492 (606)
T ss_pred HHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--c
Confidence 66665543 224444544444455566666666666666654 3444556666666666666666666666666542 2
Q ss_pred CC-------HHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 740 PN-------KITY--TIMIGGYCKLGDMKEAAKLLNVMAEKGISPD-SITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 740 p~-------~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
|+ ...+ -.++- +.-.+++..|++++.++++ +.|. ...|..|...-...|+.++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22 1111 11111 1123566666666666666 3443 24566666666666666666666665544
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=9.7e-11 Score=117.42 Aligned_cols=329 Identities=11% Similarity=0.080 Sum_probs=168.7
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhH--H
Q 003295 389 SPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLL--T 466 (833)
Q Consensus 389 ~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~ 466 (833)
.-|...+-.....+-+.|..+.|+..|.+.... .+-.-.+|..|.... .+.+.+.- ... +...|...+ -
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~~~----l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEILSI----LVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHHHH----HHh-cCcccchHHHHH
Confidence 335555444455566788888888888887754 222333333332221 11111111 111 111111111 2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHh
Q 003295 467 LLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLI--LDKVTYNTLILGCCK 544 (833)
Q Consensus 467 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~--~~~~~~~~li~~~~~ 544 (833)
.+..++....+.+++.+-.+.....|++.+...-+....+.....++++|+.+|+++.+..+- -|..+|+.++.. +
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--K 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--H
Confidence 234455566677777777777777777766666666666666777777777777777766321 144555544433 2
Q ss_pred cCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHH
Q 003295 545 DGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETL 624 (833)
Q Consensus 545 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 624 (833)
+.+.. +..+.+-.-.--+--+.|+..+.+-|.-.++.++|...|++..+.+ +.....|+.+.+-|....+...|++-
T Consensus 310 ~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 310 NDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 21111 1111111110011123455555555555566666666666665543 22344455555555555555555555
Q ss_pred HHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003295 625 FNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLL 704 (833)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 704 (833)
++..++..+. |-..|-.+.++|.-.+.+.-|+-.|++..... +-|...|.+|..+|.+.++.++|++.|.+....| .
T Consensus 387 YRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 5555555443 55555555555555555555555555555442 3355555555555555555555555555555543 2
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003295 705 PNVACYTALIGGYCKLGQMDEAESVLQEMA 734 (833)
Q Consensus 705 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 734 (833)
.+...|..|...|-+.++.++|...|++-+
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 233455555555555555555555555443
No 40
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.58 E-value=2.5e-11 Score=130.60 Aligned_cols=531 Identities=15% Similarity=0.102 Sum_probs=270.3
Q ss_pred HHHhh-cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 003295 241 FETMC-RGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVE 319 (833)
Q Consensus 241 ~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 319 (833)
+-.+. .|..||.+||..+|.-||..|+.+.|- +|.-|.-+....+...++.++.+....|+.+.+. .
T Consensus 13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e 80 (1088)
T KOG4318|consen 13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E 80 (1088)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------C
Confidence 33444 688999999999999999999999988 8888887777778888999999888888887776 5
Q ss_pred CChhhHHHHHHHHHhcCChhH---HHHHHHHHH----HCCCCCChh--------------hHHHHHHHHHHcCChHHHHH
Q 003295 320 PSLITYSILINGLIKLEKFDD---ANFVLKEMS----VRGFVPNYV--------------VYNTLIDGYCKKGNISEALK 378 (833)
Q Consensus 320 p~~~t~~~li~~~~~~g~~~~---A~~~~~~m~----~~g~~p~~~--------------~y~~li~~~~~~g~~~~A~~ 378 (833)
|-..||+.|...|...||+.- ..+.++... ..|+.-... .-.+.+....-.|-++.+++
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999998755 222111111 111110000 00112222233334444444
Q ss_pred HHHHHHhCC-CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003295 379 IRDDMVSKG-MSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRN 457 (833)
Q Consensus 379 ~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 457 (833)
++..+.... ..|-.+ +++-... .+...++++.......-.++..+|..+++.-...|+.+.|..++.+|.+.|
T Consensus 161 ll~~~Pvsa~~~p~~v----fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQV----FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHhhCCcccccchHHH----HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 443332210 011111 1111111 111222222222211113555555555555555555555555555555555
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 003295 458 LRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNT 537 (833)
Q Consensus 458 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~ 537 (833)
...+...|-.|+.+ .++..-+..++.-|.+.|+.|+..|+...+..+.++|....+ +.|.. ....+++
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~--------~e~sq-~~hg~tA 302 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG--------EEGSQ-LAHGFTA 302 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc--------ccccc-hhhhhhH
Confidence 55555544444433 455555555555555555555555555544444443331111 11111 1111111
Q ss_pred HHHHHHhcCChhhHHHHHH------------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---CCCH
Q 003295 538 LILGCCKDGKPEEGFKLKE------------DMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVF---GPDI 602 (833)
Q Consensus 538 li~~~~~~g~~~~A~~~~~------------~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~ 602 (833)
-+..-.-.| ..|.+.++ +..-.|+......|...... ...|+-++..++-..+..--. ..++
T Consensus 303 avrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V 379 (1088)
T KOG4318|consen 303 AVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNV 379 (1088)
T ss_pred HHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchH
Confidence 111111111 11222111 11112333222233222222 225666666666655543211 1223
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHH--HHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CCC-------
Q 003295 603 YTYGVMIDGFCKADKIEEGETLFN--EMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSR----GIL------- 669 (833)
Q Consensus 603 ~~~~~li~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~------- 669 (833)
..|..++.-|.+.-+..-...++. +.+.. ..+....-.++....+ -+...+++-+..+... ...
T Consensus 380 ~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~--~l~se~tp~vsell~~-lrkns~lr~lv~Lss~Eler~he~~~~~~h 456 (1088)
T KOG4318|consen 380 DAFGALLRQYFRRIERHICSRIYYAGQGLSL--NLNSEDTPRVSELLEN-LRKNSFLRQLVGLSSTELERSHEPWPLIAH 456 (1088)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--hhchhhhHHHHHHHHH-hCcchHHHHHhhhhHHHHhcccccchhhhh
Confidence 344444444433221111111111 11110 0011111111111111 1223333322222111 001
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHHHHH
Q 003295 670 PTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASI--NIHPNKITYTI 747 (833)
Q Consensus 670 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ 747 (833)
+-...-+.++..|+..-+..+++..-+.....- -+ ..|..||+-++...+.+.|..+..+.... .+.-|..-+..
T Consensus 457 ~irdi~~ql~l~l~se~n~lK~l~~~ekye~~l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~ 533 (1088)
T KOG4318|consen 457 LIRDIANQLHLTLNSEYNKLKILCDEEKYEDLL-FA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTS 533 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHH
Confidence 112234556666777666777765544444321 12 57899999999999999999999988642 23345556788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC
Q 003295 748 MIGGYCKLGDMKEAAKLLNVMAEKGI-SPD-SITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSL 810 (833)
Q Consensus 748 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 810 (833)
+.+.+.+.+....+.++++++.+.-. .|+ ..+.-.+.......|+.+.-.+.++-+...|+..
T Consensus 534 l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 534 LQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999987321 232 3456667777788899888888887777766644
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.58 E-value=7.7e-12 Score=135.28 Aligned_cols=291 Identities=10% Similarity=0.002 Sum_probs=190.9
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003295 509 EAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIE 588 (833)
Q Consensus 509 ~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 588 (833)
..|+++.|.+.+.+..+.... ....+-.......+.|+.+.|.+.+.+..+....++..........+...|+++.|..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 467777777777766655332 2333334455566677777777777777665333222233334666667777777777
Q ss_pred HHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHH-HHHH---HHHHcCChHHHHHHHHHHH
Q 003295 589 LWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYN-TLIR---AYCKIGNTTAAFRLSNDMK 664 (833)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~---~~~~~g~~~~A~~~~~~m~ 664 (833)
.++.+.+.. +-+......+...+.+.|++++|.+.+..+.+.+.. +...+. .-.. +....+..+++.+.+..+.
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 777777664 334556667777777777777777777777776543 322221 1111 1122233333344555555
Q ss_pred hCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhH---HHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003295 665 SRGI---LPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVAC---YTALIGGYCKLGQMDEAESVLQEMASINI 738 (833)
Q Consensus 665 ~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 738 (833)
+... +.+...+..+...+...|+.++|.+.+++..+. .||... ...........++.+.+.+.+++..+..
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~- 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV- 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-
Confidence 4321 137778888888999999999999999999885 344331 1122222334577888888888888652
Q ss_pred CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 739 HPNK--ITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 739 ~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
+-|. ....++++.+.+.|++++|.+.|++.......|+...+..++..+.+.|+.++|.+++++.+.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445 667789999999999999999999543333578998889999999999999999999987654
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3.3e-10 Score=113.67 Aligned_cols=381 Identities=13% Similarity=0.043 Sum_probs=260.2
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHH
Q 003295 424 SINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVN--TVTSN 501 (833)
Q Consensus 424 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~ 501 (833)
..|...+......+-+.|..+.|++.+...+..-+- .+.+-+.. ++.-.-.++...+.. +.+.| ...--
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~----~W~AWleL----~~lit~~e~~~~l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPW----FWSAWLEL----SELITDIEILSILVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCc----chHHHHHH----HHhhchHHHHHHHHh-cCcccchHHHHH
Confidence 334444444444455667777777777766543211 22222211 111111222222222 12211 11112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC--CCHHHHHHHHHHHHh
Q 003295 502 ALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQ--PDNYTYNLLLHGLCS 579 (833)
Q Consensus 502 ~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~ 579 (833)
-+..++-...+.+++..-.....+.|+.-+...-+....+.....++++|..+|+++.+..+- -|..+|..++ |.+
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHH
Confidence 234455566677777777777777777655444444555556677888888888888877321 1556666554 223
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHH
Q 003295 580 LGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRL 659 (833)
Q Consensus 580 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 659 (833)
..+.. +.++.+-...--+--+.|...+.+-|.-.++.++|...|+..++.++. ....|+.+.+-|....+...|.+-
T Consensus 310 ~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 310 NDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 22211 222221111111223345556667777889999999999999998766 778999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 003295 660 SNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIH 739 (833)
Q Consensus 660 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 739 (833)
++..++.. +.|-..|-.|..+|.-.+...-|+-.|+++.+.. +.|...|.+|..+|.+.++.++|++.|.+....| .
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 99999985 5589999999999999999999999999999852 4478999999999999999999999999999876 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHH
Q 003295 740 PNKITYTIMIGGYCKLGDMKEAAKLLNVMAE----KGISPD--SITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSLDEI 813 (833)
Q Consensus 740 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 813 (833)
.+...+..|.+.|-+.++.++|...+++-++ .|...+ ..+..-|..-+.+.+++++|..+....... .+...
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~e 541 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECE 541 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHH
Confidence 5778999999999999999999999998876 233333 233344677788999999999988777653 66666
Q ss_pred HHHHHHHhhc
Q 003295 814 TYTTLIDGWQ 823 (833)
Q Consensus 814 ~~~~l~~~~~ 823 (833)
--+.|+..+.
T Consensus 542 eak~LlReir 551 (559)
T KOG1155|consen 542 EAKALLREIR 551 (559)
T ss_pred HHHHHHHHHH
Confidence 6677777765
No 43
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.57 E-value=1.1e-08 Score=107.00 Aligned_cols=544 Identities=12% Similarity=0.083 Sum_probs=326.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhcCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 003295 218 LKTCNFLLNSLVKANEVQKGIEVFETMCRGVS--PDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIH 295 (833)
Q Consensus 218 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 295 (833)
++.|-.-+..+.++|++..-+..|+..++..| .....|...+.-....|-.+-+..++++.++. ++..-+-.|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 45788888999999999999999999985443 34567888888888889999999999999985 3444777888
Q ss_pred HHHhcCChhHHHHHHHHHHhCC------CCCChhhHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCC--hhhHHHHH
Q 003295 296 GLCRNGRLYEAFHLKEKMVLRE------VEPSLITYSILINGLIKLEKFD---DANFVLKEMSVRGFVPN--YVVYNTLI 364 (833)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m~~~~------~~p~~~t~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~--~~~y~~li 364 (833)
.+++.+++++|.+.+.....+. .+.+...|..+-+...+..+.- ....+++.+..+ -+| ...|++|+
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLA 255 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHH
Confidence 8999999999999998886431 2345556776666665544322 334455555544 345 45799999
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCcccHHHHHHHHHhcCCh
Q 003295 365 DGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLS-INQGAYTSVIKWLCINSRF 443 (833)
Q Consensus 365 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~-~~~~~~~~li~~~~~~g~~ 443 (833)
+.|.+.|.+++|..+|++....- ..+.-+..+.+.|..-....-+..+ +...+.+.. -+.. ++
T Consensus 256 dYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~m-e~a~~~~~n~ed~~-------------dl 319 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKM-ELADEESGNEEDDV-------------DL 319 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHH-hhhhhcccChhhhh-------------hH
Confidence 99999999999999999987742 2444555666666543221111111 100001100 0111 11
Q ss_pred hHHHHHHHHHHHCCC-----------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHH
Q 003295 444 NSALHFTKEMLLRNL-----------RPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTV------NTVTSNALIHG 506 (833)
Q Consensus 444 ~~A~~~~~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~------~~~~~~~li~~ 506 (833)
+-.+..|..+..+.. ..+...+.. ..-+..|+..+-...+.+.+.. +.| -...|..+...
T Consensus 320 ~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~k--RV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~fakl 396 (835)
T KOG2047|consen 320 ELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHK--RVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKL 396 (835)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHh--hhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHH
Confidence 111122222211110 011111111 1122344455555555555543 111 12356666666
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC-----------C------C
Q 003295 507 MCEAGNLKEAGKLLMEMLQRGLILD---KVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQ-----------P------D 566 (833)
Q Consensus 507 ~~~~g~~~~A~~~l~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----------p------~ 566 (833)
|-..|+++.|..+|++..+-..+-- ..+|..-...=.+..+++.|+++.+......-. + +
T Consensus 397 Ye~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrS 476 (835)
T KOG2047|consen 397 YENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRS 476 (835)
T ss_pred HHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHh
Confidence 6677777777777776665433211 123333333334555666666666655432111 0 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCH-HHHHHHHH
Q 003295 567 NYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNP-VVYNTLIR 645 (833)
Q Consensus 567 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~ 645 (833)
...|...++.--..|-++....+|+.+.+..+... ...-.....+-...-++++.+++++-+..-..|+. ..|+..+.
T Consensus 477 lkiWs~y~DleEs~gtfestk~vYdriidLriaTP-qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLt 555 (835)
T KOG2047|consen 477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRIATP-QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLT 555 (835)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHH
Confidence 33456666666677888888888988887654322 11112222334455678888888877666545554 45666665
Q ss_pred HHHHc---CChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHH
Q 003295 646 AYCKI---GNTTAAFRLSNDMKSRGILPTSVTYSSLIHG--LCNIGLIEDAKCLFDEMRKEGLLPN--VACYTALIGGYC 718 (833)
Q Consensus 646 ~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~ 718 (833)
-+.+. ..++.|..+|++.++ |++|...-+..|+.+ -.+.|....|+++++++... +++. ...||..|.--.
T Consensus 556 kfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaa 633 (835)
T KOG2047|consen 556 KFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAA 633 (835)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHH
Confidence 55432 467889999999988 666654333333222 23458888899999987764 3443 256777776544
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhcCCC
Q 003295 719 KLGQMDEAESVLQEMASINIHPNKITY---TIMIGGYCKLGDMKEAAKLLNVMAEKGISP--DSITYNVFMDGHCKGGN 792 (833)
Q Consensus 719 ~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~ 792 (833)
..=-+.....++++.++. -||...- .-....=++.|..+.|..++.-..+. +.| +...|.+.=.-=.+.|+
T Consensus 634 e~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 634 EIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCC
Confidence 444455667788888774 5555432 23344456788999999888877664 355 55667777666678888
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=1.4e-11 Score=132.51 Aligned_cols=286 Identities=11% Similarity=0.018 Sum_probs=193.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003295 510 AGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIEL 589 (833)
Q Consensus 510 ~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 589 (833)
.|+++.|.+.+....+.... ....|........+.|+++.|...+.++.+....+...........+...|+++.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 57777777666665443211 12223222334466777777777777776642222112222335566777777777777
Q ss_pred HHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCH-------HHHHHHHHHHHHcCChHHHHHHHHH
Q 003295 590 WEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNP-------VVYNTLIRAYCKIGNTTAAFRLSND 662 (833)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~ 662 (833)
++++.+.. +.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.
T Consensus 176 l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 77776654 334666667777777777777777777777776544222 1223333333334445555566665
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 003295 663 MKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNK 742 (833)
Q Consensus 663 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 742 (833)
+.+. .+.+......+...+...|+.++|.+.+++..+. .|+.... ++.+....++.+++.+..++..+.. +-|.
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~ 328 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTP 328 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCH
Confidence 5443 2457777888889999999999999999988874 4555322 2334445688999999999888763 5566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 743 ITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 743 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
..+..+...|.+.|++++|.+.|+++.+ ..|+..+|..|...+.+.|+.++|.+.+++-+.
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7788899999999999999999999998 569998888999999999999999999887754
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=2.9e-11 Score=130.79 Aligned_cols=293 Identities=12% Similarity=-0.006 Sum_probs=195.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 003295 473 CKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGF 552 (833)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 552 (833)
...|+++.|.+.+.+..+.... ....+-.....+.+.|+.+.|...+.+..+....+...........+...|+++.|.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4567777777777766655322 233444455667777888888888877766543322233333466667778888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHH---HHHHHccCCHHHHHHHHHHHH
Q 003295 553 KLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVM---IDGFCKADKIEEGETLFNEMI 629 (833)
Q Consensus 553 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~ 629 (833)
..++.+.+..+. +...+..+...+...|++++|.+.+..+.+.+..+.......- ..++...+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888888777544 5667777777888888888888888887776543222111111 111122233333344555555
Q ss_pred HCCCc---cCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003295 630 SKKME---LNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVT---YSSLIHGLCNIGLIEDAKCLFDEMRKEGL 703 (833)
Q Consensus 630 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 703 (833)
+..+. .++..+..++..+...|+.++|.+.+++..+.. ||... ...........++.+.+.+.+++..+..
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~- 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV- 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-
Confidence 44332 277888888889999999999999999988863 33331 1112222344577888888888888752
Q ss_pred CCCh--hHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 704 LPNV--ACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 704 ~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
+-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2344 566788899999999999999999544433578888888999999999999999999998654
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.5e-10 Score=117.57 Aligned_cols=284 Identities=13% Similarity=0.033 Sum_probs=181.3
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 003295 531 DKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMID 610 (833)
Q Consensus 531 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 610 (833)
+........+-+...+++.+..++.+...+.. +++...+..-|.++...|+..+-..+=.++.+. .+..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 33344444455556677777777777777653 334455555556667777666665555555554 2445667777777
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003295 611 GFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIED 690 (833)
Q Consensus 611 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 690 (833)
-|...|+..+|.+.|.+....... -...|-.+...|.-.|..++|+..+....+. ++-...-+..+.--|.+.++.+.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 677777777777777776654332 3456777777777777777777777666543 11111223334445667777777
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhC--CC---C-CCHHHHHHHHHHHHhcCCHHHHHHH
Q 003295 691 AKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASI--NI---H-PNKITYTIMIGGYCKLGDMKEAAKL 764 (833)
Q Consensus 691 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~---~-p~~~~~~~li~~~~~~g~~~~A~~~ 764 (833)
|.++|.++..- .+-|+..++-+.-.....+.+.+|..+|+..... .+ . --..+++.|+.+|.+.+++++|+..
T Consensus 399 Ae~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 77777777763 2336666776666666677777777777766521 00 1 1234577777778888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 003295 765 LNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSLDEITYTTLIDGW 822 (833)
Q Consensus 765 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 822 (833)
+++.+.. .+-|..++.+++-.|...|+++.|++.|.+.+. ++||..+...++..+
T Consensus 478 ~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 478 YQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 8877774 244677777777777777888888888877776 777766666555543
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.54 E-value=3.9e-14 Score=145.44 Aligned_cols=261 Identities=18% Similarity=0.203 Sum_probs=97.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHcc
Q 003295 537 TLILGCCKDGKPEEGFKLKEDMIKRG-IQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKA 615 (833)
Q Consensus 537 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 615 (833)
.+...+.+.|++++|+++++...... ...|...|..+.......++.+.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34555666677777777775544432 1224444444555566667777777777777665422 44455555555 567
Q ss_pred CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003295 616 DKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRG-ILPTSVTYSSLIHGLCNIGLIEDAKCL 694 (833)
Q Consensus 616 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~ 694 (833)
+++++|.+++.+..+.. +++..+..++..+.+.|+++++.++++.+.... .+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777776665542 455666777777777788888888777766432 244666677777777888888888888
Q ss_pred HHHHHHCCCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003295 695 FDEMRKEGLLP-NVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGI 773 (833)
Q Consensus 695 ~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 773 (833)
+++.++. .| |....+.++..+...|+.+++.++++...... +.|...|..+..+|...|++++|...+++.....
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 8888875 34 46677778888888888888777777776543 4556677788888888888888888888877742
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 774 SPDSITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 774 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
+.|+.+...++.++...|+.++|.++.++...
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 33677778888888888888888887776654
No 48
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.54 E-value=1.3e-08 Score=106.32 Aligned_cols=543 Identities=12% Similarity=0.079 Sum_probs=295.3
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHcCCCCccccCCCcchHHHHHHHHhhhhcccCCcchhhhHHHHHHHHHHhhhcc
Q 003295 118 RSYCLLIRLLLFSNLLSPARLLLIRLIDGKMPVLYASNPSIRHIEIASQMVDLNVTSEPALGVQIADLLVHVYCTQFKNL 197 (833)
Q Consensus 118 ~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (833)
..|..-+..+..++....-+..|++.+..- |+ ..| ..+++..++-.- ..+
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraL-pv-------tqH-------------------~rIW~lyl~Fv~---~~~ 152 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRAL-PV-------TQH-------------------DRIWDLYLKFVE---SHG 152 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhC-ch-------Hhh-------------------ccchHHHHHHHH---hCC
Confidence 445556666777777777777777766532 11 111 123343333222 345
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh-c------CCCCCHHHHHHHHHHHHhcCChhH
Q 003295 198 GFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMC-R------GVSPDVFLFSTAINAFCKRGRIED 270 (833)
Q Consensus 198 ~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~------~~~~~~~~~~~li~~~~~~g~~~~ 270 (833)
.++.++.+|++.++. ++..-+--+.-+++.+++++|.+.+...+ . ..+.+...|.-+-....+.-+.-.
T Consensus 153 lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~ 228 (835)
T KOG2047|consen 153 LPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQ 228 (835)
T ss_pred ChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhc
Confidence 667889999988776 44557788889999999999999998887 2 134456667776666665544333
Q ss_pred ---HHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 003295 271 ---AIGLFTKMEELGIAPNV--VTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVL 345 (833)
Q Consensus 271 ---A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 345 (833)
...++..+..+ .+|. ..|++|.+-|.+.|++++|..+|++.... .-++.-++.+-+.|+....-.-+..+=
T Consensus 229 slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me 304 (835)
T KOG2047|consen 229 SLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME 304 (835)
T ss_pred ccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444433 3554 46889999999999999999999988764 234444555555555432211111110
Q ss_pred HHHH--HCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCC-----------CCCChhHHHHHHHHHHhcCChhHHH
Q 003295 346 KEMS--VRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKG-----------MSPNSVTFNSLIHGFCKSGQMDNAE 412 (833)
Q Consensus 346 ~~m~--~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~~~~~~li~~~~~~g~~~~A~ 412 (833)
+. +.|-.-+.... +-.+.-|+.+...+ -+.++..|..-+. +..|+..+-.
T Consensus 305 --~a~~~~~n~ed~~dl-------------~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i 367 (835)
T KOG2047|consen 305 --LADEESGNEEDDVDL-------------ELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQI 367 (835)
T ss_pred --hhhhcccChhhhhhH-------------HHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHH
Confidence 10 01111111111 11111111111110 0112333332222 1234444444
Q ss_pred HHHHHHHHCCCCCC------cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCHHHHHH
Q 003295 413 NALEEMLSRGLSIN------QGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPG---DGLLTLLVSGLCKNGKQAEATE 483 (833)
Q Consensus 413 ~~l~~~~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~ 483 (833)
..+.++... +.|. ...|..+.+.|-.+|+++.|..+|....+-..+.- ..+|..-...-.+..+++.|..
T Consensus 368 ~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~ 446 (835)
T KOG2047|consen 368 NTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALK 446 (835)
T ss_pred HHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 444444432 1111 12344455555555555555555555444333211 1122222222333444455555
Q ss_pred HHHHHHHC-----------CCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 003295 484 LCFRLFEK-----------GFT------VNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDG 546 (833)
Q Consensus 484 ~~~~~~~~-----------g~~------~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g 546 (833)
+.++.... +.+ .+...|...++..-..|-++....+++.+.+..+. .+.........+-...
T Consensus 447 lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~ 525 (835)
T KOG2047|consen 447 LMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHK 525 (835)
T ss_pred HHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhH
Confidence 44443321 111 13456777777777788888999999999887655 2222222222333455
Q ss_pred ChhhHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCCCCHhhHHHH--HHHHHccCCHHH
Q 003295 547 KPEEGFKLKEDMIKRGIQPDN-YTYNLLLHGLCS---LGKMEEAIELWEECKRTVFGPDIYTYGVM--IDGFCKADKIEE 620 (833)
Q Consensus 547 ~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g~~~~ 620 (833)
-++++.+++++-+..-..|++ ..|+..+.-+.+ ..+++.|..+|++..+ |++|...-+-.| ...--+-|-...
T Consensus 526 yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~ 604 (835)
T KOG2047|consen 526 YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARH 604 (835)
T ss_pred HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 678888888876665334444 345555544433 3568899999999888 666553322222 222234577778
Q ss_pred HHHHHHHHHHCCCcc--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHH
Q 003295 621 GETLFNEMISKKMEL--NPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYS---SLIHGLCNIGLIEDAKCLF 695 (833)
Q Consensus 621 A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~---~li~~~~~~g~~~~A~~~~ 695 (833)
|..++++.... +++ -...||..|.--...=-+.....+|++.++. -|+...-. -..+.-++.|.++.|..++
T Consensus 605 amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIy 681 (835)
T KOG2047|consen 605 AMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIY 681 (835)
T ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 88888886543 222 2346777776544444455566777777765 34444322 2234446778888888888
Q ss_pred HHHHHCCCCC--ChhHHHHHHHHHHhcCC
Q 003295 696 DEMRKEGLLP--NVACYTALIGGYCKLGQ 722 (833)
Q Consensus 696 ~~m~~~g~~p--~~~~~~~li~~~~~~g~ 722 (833)
..-.+- ++| +...|.+.=.--.+.|+
T Consensus 682 a~~sq~-~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 682 AHGSQI-CDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred Hhhhhc-CCCcCChHHHHHHHHHHHhcCC
Confidence 776654 344 45567776666677787
No 49
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=8.7e-11 Score=118.46 Aligned_cols=423 Identities=15% Similarity=0.063 Sum_probs=195.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcC
Q 003295 223 FLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPN-VVTYNNIIHGLCRNG 301 (833)
Q Consensus 223 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g 301 (833)
...+-+.++|++++|++.|.+.+.-++.....|.....+|...|++++..+--.+..+. .|+ +..+..-..++-..|
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhc
Confidence 34455778899999999999988533333778888888999999999988888888775 344 345666666777777
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhH--------HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCh
Q 003295 302 RLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDD--------ANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNI 373 (833)
Q Consensus 302 ~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~--------A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~ 373 (833)
++++|+.=.. -.++..+|....-.-- |....++-.+.+-.|...+ .+.|..|...-..
T Consensus 198 ~~~eal~D~t-------------v~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS-~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 198 KFDEALFDVT-------------VLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPS-ATFIASYFGSFHA 263 (606)
T ss_pred cHHHHHHhhh-------------HHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCc-HHHHHHHHhhccc
Confidence 7777754222 2222222222221112 2222222222111222222 2222222211000
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHHHh-cCChhHHHHHHHHHHHCC-CC-----CCcccHHHHHHHHHhcCChhHH
Q 003295 374 SEALKIRDDMVSKGMSPNSVTFNSLIHGFCK-SGQMDNAENALEEMLSRG-LS-----INQGAYTSVIKWLCINSRFNSA 446 (833)
Q Consensus 374 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~l~~~~~~g-~~-----~~~~~~~~li~~~~~~g~~~~A 446 (833)
+ ..-.+...+-+.|...-..+=..+.. ...+..|...+.+-.... .. .|... ..+..+++.
T Consensus 264 ~----~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~l-e~~A~al~~------- 331 (606)
T KOG0547|consen 264 D----PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAEL-EYMAEALLL------- 331 (606)
T ss_pred c----ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhH-HHHHHHHHH-------
Confidence 0 00000000000011000000000100 012223332222211100 00 00000 111111111
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 003295 447 LHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQR 526 (833)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~ 526 (833)
....+.-.|+...|.+-|+..++....+ ...|-.+...|....+-++.+..|++..+.
T Consensus 332 ---------------------~gtF~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l 389 (606)
T KOG0547|consen 332 ---------------------RGTFHFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDL 389 (606)
T ss_pred ---------------------hhhhhhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhc
Confidence 1111223344455555555555443222 122444445555555555555566555555
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHH
Q 003295 527 GLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYG 606 (833)
Q Consensus 527 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 606 (833)
++. |+.+|..-.....-.+++++|..-|++.+...++ +...|-.+.-+..+.++++++...|++.+++ ++..+..|+
T Consensus 390 dp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~ 466 (606)
T KOG0547|consen 390 DPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYN 466 (606)
T ss_pred CCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHH
Confidence 544 4445544444444555555666656555554322 4444444555555555666666666655543 334455555
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCcc-----C--HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003295 607 VMIDGFCKADKIEEGETLFNEMISKKMEL-----N--PVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLI 679 (833)
Q Consensus 607 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 679 (833)
.....+...++++.|.+.|+..++..+.. + +.+--.++.. .-.+++..|.+++++..+... -....|..|.
T Consensus 467 ~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dp-kce~A~~tla 544 (606)
T KOG0547|consen 467 LFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDP-KCEQAYETLA 544 (606)
T ss_pred HHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCc-hHHHHHHHHH
Confidence 55555656666666666665555442221 1 1111111111 122566666666666665542 2445566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 003295 680 HGLCNIGLIEDAKCLFDEMRK 700 (833)
Q Consensus 680 ~~~~~~g~~~~A~~~~~~m~~ 700 (833)
..-.+.|++++|+++|++...
T Consensus 545 q~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 545 QFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666666543
No 50
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=9.5e-10 Score=106.38 Aligned_cols=450 Identities=13% Similarity=0.106 Sum_probs=257.2
Q ss_pred HHHHHhcCChhHHHHHHHHhh-cCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 003295 225 LNSLVKANEVQKGIEVFETMC-RGV--SPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNG 301 (833)
Q Consensus 225 l~~~~~~g~~~~A~~~~~~~~-~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 301 (833)
++-+....++..|+.+++-.. -+. ..+...| +..++...|++++|..++.-+.+.. .++...+-.|...+.-.|
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHH
Confidence 344455677777777777665 121 1233334 6777788899999998888877643 345555655666566678
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 003295 302 RLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRD 381 (833)
Q Consensus 302 ~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~ 381 (833)
.+.+|..+-.+.. .+.-.-..|.+.-.+.++-++-....+.+.+. ..--.+|.......-.+.+|++++.
T Consensus 106 ~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 106 QYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred HHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 8888887755432 23344445556666777777777666666542 2334556666666677888999998
Q ss_pred HHHhCCCCCChhHHHHHH-HHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 003295 382 DMVSKGMSPNSVTFNSLI-HGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRP 460 (833)
Q Consensus 382 ~m~~~g~~p~~~~~~~li-~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 460 (833)
+.... .|+-...|.-+ -+|.|..-++-+.+++.-.... ++.++.+.|..+....+.=.-..|.+-.+++...+...
T Consensus 176 rvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 176 RVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE 252 (557)
T ss_pred HHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc
Confidence 88775 34555555433 3567778888888888776654 44455555655555554333333334444443332211
Q ss_pred ChhhHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 003295 461 GDGLLTLLVSGLCKNG-----KQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTY 535 (833)
Q Consensus 461 ~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~ 535 (833)
...+.-+++.+ .-+.|++++-.+.+. -+..--.|+-.|.+++++++|..+.+++.-. .|-....
T Consensus 253 -----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~Eyil 321 (557)
T KOG3785|consen 253 -----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYIL 321 (557)
T ss_pred -----chhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHH
Confidence 11222333332 235566666555543 2234445666788888888888887765432 2222222
Q ss_pred HHHHHHHHhcCC-------hhhHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 003295 536 NTLILGCCKDGK-------PEEGFKLKEDMIKRGIQPDNY-TYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGV 607 (833)
Q Consensus 536 ~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 607 (833)
..+ .+...|+ ..-|.+.|...-+.+..-|.. .-..+..++.-..++++.+-+++.+..--...|...+ .
T Consensus 322 Kgv--v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N 398 (557)
T KOG3785|consen 322 KGV--VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-N 398 (557)
T ss_pred HHH--HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-H
Confidence 222 2222222 334444454444444332222 2233444455556677777777776654333334333 3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHH-HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhc
Q 003295 608 MIDGFCKADKIEEGETLFNEMISKKMELNPVVYNT-LIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTY-SSLIHGLCNI 685 (833)
Q Consensus 608 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~ 685 (833)
+..+++..|.+.+|+++|-.+....++ |..+|.+ +..+|.+.++++.|++++-++.. +.+..+. ..+.+.|.+.
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKA 474 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHH
Confidence 667777788888888887766554444 4555544 45667777777777766654432 2233332 3334556677
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhHH
Q 003295 686 GLIEDAKCLFDEMRKEGLLPNVACY 710 (833)
Q Consensus 686 g~~~~A~~~~~~m~~~g~~p~~~~~ 710 (833)
+.+--|-+.|+.+.. +.|++..|
T Consensus 475 ~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 475 NEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HHHHHHHHhhhHHHc--cCCCcccc
Confidence 777777777776665 35666655
No 51
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.53 E-value=4.4e-11 Score=128.62 Aligned_cols=286 Identities=11% Similarity=0.025 Sum_probs=173.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 003295 475 NGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKL 554 (833)
Q Consensus 475 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 554 (833)
.|+++.|.+.+....+.... ....|........+.|+++.|...+.++.+....+...........+...|++++|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45666666555543332111 12222222334456667777777776666543221111112234556666777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-------hhHHHHHHHHHccCCHHHHHHHHHH
Q 003295 555 KEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDI-------YTYGVMIDGFCKADKIEEGETLFNE 627 (833)
Q Consensus 555 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~ 627 (833)
++++.+..+. +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.
T Consensus 176 l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 7776666433 5566666666777777777777777766665433221 1222223333333444555555555
Q ss_pred HHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 003295 628 MISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNV 707 (833)
Q Consensus 628 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 707 (833)
+.+.- +.++.....+...+...|+.++|.+.+++..+. +|+.... ++.+....++.+++.+..++..+.. +-|.
T Consensus 255 lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~ 328 (398)
T PRK10747 255 QSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTP 328 (398)
T ss_pred CCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCH
Confidence 43332 236777777788888888888888888877764 4454222 2333445578888888888877752 3455
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 708 ACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 708 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
..+.++...+.+.|++++|.+.|+++.+ ..|+...+..+...+.+.|+.++|.+++++...
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5677778888888888888888888887 367878777888888888888888888887654
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.2e-10 Score=116.82 Aligned_cols=508 Identities=14% Similarity=0.067 Sum_probs=318.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 003295 250 PDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILI 329 (833)
Q Consensus 250 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li 329 (833)
.+..-+..+.+-+..+.++.-|.-+-++....+. |+..--.+..+++-.|++++|..+...-.-. ..|..+.....
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~--dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~ 89 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAGLTN--DPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAA 89 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccC--ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHH
Confidence 3455566777777778888888888888876654 4444455778888888999888887655432 35777888888
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChh
Q 003295 330 NGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMD 409 (833)
Q Consensus 330 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 409 (833)
..+.+..++++|..++..-.. .-+...|..-=. ...-..+.+. ++....+ ....+-.-...|....+.+
T Consensus 90 ~~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~--~~~l~~n~~~----~~~~~~~--essic~lRgk~y~al~n~~ 158 (611)
T KOG1173|consen 90 KCLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDA--ANTLELNSAG----EDLMINL--ESSICYLRGKVYVALDNRE 158 (611)
T ss_pred HHHHHHHHHHHHHHHhcccch---hhcchhhcchhh--hceeccCccc----ccccccc--hhceeeeeeehhhhhccHH
Confidence 888888999998888872210 001111100000 0000000010 0000000 0000000111233334455
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCChhhHHHHHHHH-HhcCCHHHHHHH
Q 003295 410 NAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRN----LRPGDGLLTLLVSGL-CKNGKQAEATEL 484 (833)
Q Consensus 410 ~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~li~~~-~~~g~~~~A~~~ 484 (833)
+|...|.+.... |...+..+...-... .-.+.+.+..+...+ ...+......+.... ++.-+ ++....
T Consensus 159 ~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~--mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n-~~~~~r 231 (611)
T KOG1173|consen 159 EARDKYKEALLA----DAKCFEAFEKLVSAH--MLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRN-EESLTR 231 (611)
T ss_pred HHHHHHHHHHhc----chhhHHHHHHHHHHH--hcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcc-cccccc
Confidence 555555554433 222222211110000 000000000000000 000011111111100 00000 000000
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC
Q 003295 485 CFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQ 564 (833)
Q Consensus 485 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 564 (833)
-....-.+...++.....-.+-+...+++++..+++++..+..+. ....+..-|.++...|+..+-..+-.++.+.- +
T Consensus 232 ~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpf-h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P 309 (611)
T KOG1173|consen 232 NEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPF-HLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-P 309 (611)
T ss_pred CchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCC-CcchHHHHHHHHHHhcccchHHHHHHHHHHhC-C
Confidence 000011123346666667777888899999999999999987544 66667777778899999999999989998874 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHH
Q 003295 565 PDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLI 644 (833)
Q Consensus 565 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 644 (833)
..+.+|-++.--|...|+..+|++.|.+....+ +.=...|-.+.+.|.-.|..+.|...+....+.-+. ...-+--+.
T Consensus 310 ~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlg 387 (611)
T KOG1173|consen 310 SKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLG 387 (611)
T ss_pred CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHH
Confidence 377889999988989999999999999876543 112457888899999999999999998887664211 222233344
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC----CChhHHHHHHHHHH
Q 003295 645 RAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKE--GLL----PNVACYTALIGGYC 718 (833)
Q Consensus 645 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~----p~~~~~~~li~~~~ 718 (833)
--|.+.++...|.+.|.+..... +-|+..++-+.-.....+.+.+|..+|+..+.. .+. -...+++.|..+|.
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 56778899999999999988763 557888888887777889999999999988732 111 13456889999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003295 719 KLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGH 787 (833)
Q Consensus 719 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 787 (833)
+.+++++|+..+++..... +-|..++.+++-.|...|+++.|++.|++.+. +.||..+...++..+
T Consensus 467 kl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 9999999999999999864 77889999999999999999999999999988 789886666666544
No 53
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.51 E-value=1e-13 Score=142.31 Aligned_cols=262 Identities=17% Similarity=0.177 Sum_probs=104.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003295 502 ALIHGMCEAGNLKEAGKLLMEMLQRG-LILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSL 580 (833)
Q Consensus 502 ~li~~~~~~g~~~~A~~~l~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 580 (833)
.+...+.+.|++++|++++++..... ...|...|..+.......++.+.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44666777778888888776544443 2224445555555666677788888888888776544 55556666666 677
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-CccCHHHHHHHHHHHHHcCChHHHHHH
Q 003295 581 GKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKK-MELNPVVYNTLIRAYCKIGNTTAAFRL 659 (833)
Q Consensus 581 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~ 659 (833)
+++++|.+++....+. .++...+...+..+.+.++++++.++++.+.... ...+...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888877766554 2455666677777888888888888888876533 245777888888888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 003295 660 SNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIH 739 (833)
Q Consensus 660 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 739 (833)
+++..+.. +.|......++..+...|+.+++.+++....+.. +.|...+..+..+|...|+.++|...+++..... +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 88888763 3356677788888888888888888888877753 4566677888888888889999999888888753 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 740 PNKITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 740 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
.|......+..++...|+.++|.++..++.+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 5777888888888888999888888877654
No 54
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.51 E-value=5.6e-09 Score=111.69 Aligned_cols=486 Identities=14% Similarity=0.091 Sum_probs=288.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHH---HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHH
Q 003295 299 RNGRLYEAFHLKEKMVLREVEPSLITYSILING---LIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISE 375 (833)
Q Consensus 299 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~ 375 (833)
+.++.++++.-+......+..-+..++-.+-.+ |...++.+++ +|-.....-+.|-...+.+.+...
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm-------- 308 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLM-------- 308 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHH--------
Confidence 345566666666666666666666666555444 3344555555 233332222222222222222110
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003295 376 ALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLL 455 (833)
Q Consensus 376 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 455 (833)
-.+.++....++-|...|..|.-+....|+++.+.+.|++.... .......|..+...+...|....|+.++++...
T Consensus 309 --~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~ 385 (799)
T KOG4162|consen 309 --LLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLK 385 (799)
T ss_pred --HHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 12222333333446666666766777777888777777776643 223455677777777777777777777777666
Q ss_pred CCCCCChhhHHHHHHHH--HhcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHhcC-----------CHHHHHH
Q 003295 456 RNLRPGDGLLTLLVSGL--CKNGKQAEATELCFRLFEK--GF--TVNTVTSNALIHGMCEAG-----------NLKEAGK 518 (833)
Q Consensus 456 ~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~g-----------~~~~A~~ 518 (833)
....|++.+...++... -+.+.++++.++..+++.. +. ......|..+.-+|...- ...++.+
T Consensus 386 ~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslq 465 (799)
T KOG4162|consen 386 KSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQ 465 (799)
T ss_pred cccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHH
Confidence 55555554444444322 3456677777777776652 11 113345555555554321 2356677
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 003295 519 LLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVF 598 (833)
Q Consensus 519 ~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 598 (833)
.+++..+.+.. |......+.--|+..++++.|.+...+.++.+..-+...|..+.-.+...+++.+|+.+.+.....-
T Consensus 466 ale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~- 543 (799)
T KOG4162|consen 466 ALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF- 543 (799)
T ss_pred HHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-
Confidence 77777776654 4444444455566777888888888888887666677778877777777888888888877665431
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC----------------------------CCccCHHHHHHHHHHHHHc
Q 003295 599 GPDIYTYGVMIDGFCKADKIEEGETLFNEMISK----------------------------KMELNPVVYNTLIRAYCKI 650 (833)
Q Consensus 599 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------------------------~~~~~~~~~~~li~~~~~~ 650 (833)
..|......-++.-..-++.++|......++.. .+.-...++..+..-...
T Consensus 544 ~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~- 622 (799)
T KOG4162|consen 544 GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS- 622 (799)
T ss_pred hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh-
Confidence 111111111122222344555554443333211 000011122211111110
Q ss_pred CChHHHHHHHHHHHhCCCC--CCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC
Q 003295 651 GNTTAAFRLSNDMKSRGIL--PTS------VTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQ 722 (833)
Q Consensus 651 g~~~~A~~~~~~m~~~~~~--p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 722 (833)
+...+..-.. +...... |+. ..|......+.+.+..++|...+.+..+.. +-....|......+...|.
T Consensus 623 -~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~ 699 (799)
T KOG4162|consen 623 -QLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQ 699 (799)
T ss_pred -hhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHh
Confidence 0000000000 1111111 221 234455667788899999998888888742 3456677777788889999
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 003295 723 MDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAK--LLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVC 800 (833)
Q Consensus 723 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 800 (833)
.++|.+.|......+ +.++.+..++..++.+.|+..-|.. ++..+++.+ +-++..|..|+..+.+.|+.+.|.+-|
T Consensus 700 ~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 700 LEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred hHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 999999999998754 4456688999999999999888887 999999954 337899999999999999999999999
Q ss_pred HHHHH
Q 003295 801 DRMLS 805 (833)
Q Consensus 801 ~~m~~ 805 (833)
....+
T Consensus 778 ~aa~q 782 (799)
T KOG4162|consen 778 QAALQ 782 (799)
T ss_pred HHHHh
Confidence 98877
No 55
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=3.3e-09 Score=102.73 Aligned_cols=452 Identities=13% Similarity=0.091 Sum_probs=245.5
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHH
Q 003295 298 CRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEAL 377 (833)
Q Consensus 298 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~ 377 (833)
....++..|+.+++--...+-+....+-.-+..++.+.|++++|...+.-+..+. .++...+..|..++.-.|.+.+|.
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHH
Confidence 3445666666666554433222222233334455666777777777776665532 345555566666666667777776
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003295 378 KIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRN 457 (833)
Q Consensus 378 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 457 (833)
.+.....+ +...-..|.+.-.+.++-++-..+-+.+.+. ..--.++.......-.+.+|+++++..+..+
T Consensus 112 ~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 112 SIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66554332 2222333444445556555555444444321 2233445555555666677777777666543
Q ss_pred CCCChhhHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 003295 458 LRPGDGLLT-LLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYN 536 (833)
Q Consensus 458 ~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~ 536 (833)
.. -...+ .+.-+|.+..-++-+.+++.-.+.. ++.++..-|..+....+.=.-..|.+-..++.+.+-. . |
T Consensus 182 ~e--y~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~---~- 253 (557)
T KOG3785|consen 182 PE--YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E---Y- 253 (557)
T ss_pred hh--hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c---c-
Confidence 22 22222 2333555666666666666665554 4445566665555544433333344444444443221 0 1
Q ss_pred HHHHHHHhc-----CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHH--
Q 003295 537 TLILGCCKD-----GKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMI-- 609 (833)
Q Consensus 537 ~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-- 609 (833)
..+.-+|+. .+-+.|++++-.+.+. -| ..--.|+--|.+.+++.+|..+.+++.-. .|-......+.
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~a 327 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFA 327 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHH
Confidence 123333443 2446777777666654 22 12233455677888888888877665321 12222111111
Q ss_pred ---HHHHccCCHHHHHHHHHHHHHCCCccCHHH-HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003295 610 ---DGFCKADKIEEGETLFNEMISKKMELNPVV-YNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNI 685 (833)
Q Consensus 610 ---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 685 (833)
.-......+.-|.+.|+-.-+.+..-|.+. -.++...+.-..++++.+-.++.....-...|...| .+..+.+..
T Consensus 328 alGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~at 406 (557)
T KOG3785|consen 328 ALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLAT 406 (557)
T ss_pred HhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHh
Confidence 111122235556666665555544433322 234444555556677777777776665333344444 367788888
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHH
Q 003295 686 GLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTI-MIGGYCKLGDMKEAAKL 764 (833)
Q Consensus 686 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~A~~~ 764 (833)
|++.+|+++|-......++.+......|..+|.+.++.+-|+.++-++.. +.+..+... +..-|.+.+.+=-|.+.
T Consensus 407 gny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKA 483 (557)
T KOG3785|consen 407 GNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKA 483 (557)
T ss_pred cChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999887776544333333345567888888999888887666542 334444443 34568888888888888
Q ss_pred HHHHHHcCCCCCHHHH
Q 003295 765 LNVMAEKGISPDSITY 780 (833)
Q Consensus 765 ~~~m~~~g~~p~~~~~ 780 (833)
|+.+.. +.|++..|
T Consensus 484 Fd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 484 FDELEI--LDPTPENW 497 (557)
T ss_pred hhHHHc--cCCCcccc
Confidence 887766 45665544
No 56
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=2.6e-11 Score=127.51 Aligned_cols=282 Identities=13% Similarity=0.083 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCChhhHHHHH
Q 003295 478 QAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGL--ILDKVTYNTLILGCCKDGKPEEGFKLK 555 (833)
Q Consensus 478 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~ 555 (833)
..+|...|.++..+ ......+...+..+|...+++++|.++|+.+.+..+ .-+...|.+.+-.+-+ +-++..+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 45566666664333 222234555566667777777777777776665531 1145556555544322 1122222
Q ss_pred -HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCc
Q 003295 556 -EDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKME 634 (833)
Q Consensus 556 -~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 634 (833)
+.+++.. +-.+.+|.++.++|.-+++.+.|++.|++..+.+ +....+|+.+.+-+....++|.|...|+..+...+.
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 2222221 2255677777777777777777777777766642 114566666666666666677777777666654222
Q ss_pred cCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHH
Q 003295 635 LNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALI 714 (833)
Q Consensus 635 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 714 (833)
+..+|-.+.-.|.+.++++.|.-.|++..+.+ +-+.+....+...+.+.|+.|+|+++++++.... +-|+..--..+
T Consensus 488 -hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 -HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRA 564 (638)
T ss_pred -hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHH
Confidence 33334445556666666666666666666654 2245555555556666666666666666666532 12333333344
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 715 GGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 715 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
..+...++.++|+..++++.+. ++.+...|..++..|.+.|+.+.|+.-|.-|.+
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 4455566666666666666653 223344555566666666666666666666655
No 57
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=4.6e-08 Score=106.87 Aligned_cols=563 Identities=15% Similarity=0.133 Sum_probs=315.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh--cCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHH
Q 003295 204 DVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMC--RGVSPDVFL-FSTAINAFCKRGRIEDAIGLFTKMEE 280 (833)
Q Consensus 204 ~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (833)
++-+.+...+.. +.+-|-.+...|.++|-+..|++.|.+.. +.....+.. ----+-.|...-.++++.+.+..|..
T Consensus 593 qVADAILgN~mF-tHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~ 671 (1666)
T KOG0985|consen 593 QVADAILGNDMF-THYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLS 671 (1666)
T ss_pred HHHHHHHhcccc-ccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333434444333 33447778888999999999998887764 111000000 00012334556678999999999998
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-----------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHH-
Q 003295 281 LGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLR-----------EVEPSLITYSILINGLIKLEKFDDANFVLKEM- 348 (833)
Q Consensus 281 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----------~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m- 348 (833)
.++..|..+.-.+..-|+..=-.+.-+++|+....- ++..|....-..|.+-|+.|++.+..++-++-
T Consensus 672 ~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn 751 (1666)
T KOG0985|consen 672 ANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESN 751 (1666)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccc
Confidence 887777766666666666555555566666655431 24556666677888999999998888776543
Q ss_pred -----------HHC---------------CCCCChhhHH------HHHHHHHHcCChHHHHHHHHHHHhCCCCCChh---
Q 003295 349 -----------SVR---------------GFVPNYVVYN------TLIDGYCKKGNISEALKIRDDMVSKGMSPNSV--- 393 (833)
Q Consensus 349 -----------~~~---------------g~~p~~~~y~------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--- 393 (833)
.+. |+.+|.+.|. ..|..|.+.=+....-.+...+..-.+.-+..
T Consensus 752 ~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~L 831 (1666)
T KOG0985|consen 752 CYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNL 831 (1666)
T ss_pred cCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHH
Confidence 111 2223333221 12334444333333333333333222211110
Q ss_pred --------HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCChhh
Q 003295 394 --------TFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSR-FNSALHFTKEMLLRNLRPGDGL 464 (833)
Q Consensus 394 --------~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~ 464 (833)
.-..|+.-.-|.+++.--..+++.....|.. |..++|++...|....+ .+.-+. .+...
T Consensus 832 i~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLk-----------eN~yY 899 (1666)
T KOG0985|consen 832 ILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLK-----------ENPYY 899 (1666)
T ss_pred HHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcc-----------cCCcc
Confidence 1122333334455555556667777777765 78888888888776433 222111 11111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCCHHHHH-----------HHHHHHhhCCCC
Q 003295 465 LTLLVSGLCKNGKQAEATELCFRLFEK----GFTVNTVTSNALIHGMCEAGNLKEAG-----------KLLMEMLQRGLI 529 (833)
Q Consensus 465 ~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~~~~~~~~~li~~~~~~g~~~~A~-----------~~l~~m~~~g~~ 529 (833)
-+..+.-||...+.--|.-.+++-.-. .+...-..|..+.+.+.+..+.+--. .+.++..+.+++
T Consensus 900 Ds~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~ 979 (1666)
T KOG0985|consen 900 DSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALP 979 (1666)
T ss_pred hhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCC
Confidence 123334444444433222111110000 00001122333333333333333222 233333333221
Q ss_pred --CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCC--CCCHHHHHHHHHH---------------------------HH
Q 003295 530 --LDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGI--QPDNYTYNLLLHG---------------------------LC 578 (833)
Q Consensus 530 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~---------------------------~~ 578 (833)
-|+...+.-+.++...+-+.+-+++++++.-... .-+...-|.|+-. +.
T Consensus 980 E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai 1059 (1666)
T KOG0985|consen 980 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAI 1059 (1666)
T ss_pred ccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHh
Confidence 2455556667777777777788888877764321 1111122222222 22
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHH
Q 003295 579 SLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFR 658 (833)
Q Consensus 579 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 658 (833)
..+-+++|..+|+..- .+....+.||. .-+.++.|.+.-++.. .+..|..+..+-.+.|.+.+|++
T Consensus 1060 ~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAie 1125 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIE 1125 (1666)
T ss_pred hhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHH
Confidence 2233445555554332 23333333433 2345555555544432 56789999999999999999888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003295 659 LSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINI 738 (833)
Q Consensus 659 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 738 (833)
-|-+. .|+..|..+++...+.|.+++-..++.-+.+..-+|.+. +.||-+|++.+++.+-++++ .
T Consensus 1126 Syika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~ 1190 (1666)
T KOG0985|consen 1126 SYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------A 1190 (1666)
T ss_pred HHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------c
Confidence 77542 366789999999999999999999988888776566554 57888999999988766553 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003295 739 HPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSLDEITYTTL 818 (833)
Q Consensus 739 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 818 (833)
.||..-...+++-|...|.++.|.-++.... .|..|...+...|.++.|.+.-++.- +..+|..+
T Consensus 1191 gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~V 1255 (1666)
T KOG0985|consen 1191 GPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEV 1255 (1666)
T ss_pred CCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHH
Confidence 6888888888999999999888877666532 36777777777777777766544332 34566655
Q ss_pred HHhhc
Q 003295 819 IDGWQ 823 (833)
Q Consensus 819 ~~~~~ 823 (833)
-.+|.
T Consensus 1256 cfaCv 1260 (1666)
T KOG0985|consen 1256 CFACV 1260 (1666)
T ss_pred HHHHh
Confidence 55543
No 58
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.44 E-value=2.4e-08 Score=107.05 Aligned_cols=285 Identities=16% Similarity=0.052 Sum_probs=178.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 003295 478 QAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKED 557 (833)
Q Consensus 478 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 557 (833)
..++++.+++..+.+.. |+.+...+.--|...++++.|.+..++..+.+..-+...|..|.-.+...+++.+|+.+.+.
T Consensus 460 h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 34566666666665433 22333333444666677777777777777775555777777777777777777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---------------------C-------CCCCHhhHHHHH
Q 003295 558 MIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRT---------------------V-------FGPDIYTYGVMI 609 (833)
Q Consensus 558 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------------~-------~~~~~~~~~~li 609 (833)
....-.. |......-++.-...++.++|+.....+... | ......++..+.
T Consensus 539 al~E~~~-N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 539 ALEEFGD-NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHHhhh-hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 6654111 1111111122222234444444333222110 0 001122232222
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCC--ccC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003295 610 DGFCKADKIEEGETLFNEMISKKM--ELN------PVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHG 681 (833)
Q Consensus 610 ~~~~~~g~~~~A~~~~~~~~~~~~--~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 681 (833)
......+........ +..... .|+ ...|......+.+.++.++|...+.+..... +-....|......
T Consensus 618 ~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~ 693 (799)
T KOG4162|consen 618 SLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLL 693 (799)
T ss_pred HHHHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHH
Confidence 222111110000000 111111 122 2356667778889999999998888887653 4466667777788
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHhcCChhHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 003295 682 LCNIGLIEDAKCLFDEMRKEGLLP-NVACYTALIGGYCKLGQMDEAES--VLQEMASINIHPNKITYTIMIGGYCKLGDM 758 (833)
Q Consensus 682 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 758 (833)
+...|..++|.+.|.....- .| ++....++..++.+.|+..-|.. ++..+.+.+ +.+...|..++..+.+.|+.
T Consensus 694 ~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 694 LEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred HHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccch
Confidence 88999999999999999884 55 45678899999999998877777 999999976 77899999999999999999
Q ss_pred HHHHHHHHHHHHc
Q 003295 759 KEAAKLLNVMAEK 771 (833)
Q Consensus 759 ~~A~~~~~~m~~~ 771 (833)
++|.+.|..+.+.
T Consensus 771 ~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 771 KQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998873
No 59
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=4.4e-11 Score=125.79 Aligned_cols=280 Identities=14% Similarity=0.105 Sum_probs=214.8
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHH-
Q 003295 443 FNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGF--TVNTVTSNALIHGMCEAGNLKEAGKL- 519 (833)
Q Consensus 443 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~- 519 (833)
..+|+..|... -........+...+..+|...+++++|..+|+.+.+... ..+..+|.+.+-.+-+. -++..
T Consensus 335 ~~~A~~~~~kl-p~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKL-PSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHhh-HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 44555555552 222333336667788888899999999999988877532 23566777776544322 22222
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 003295 520 LMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFG 599 (833)
Q Consensus 520 l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 599 (833)
-+++.+.... .+.+|.++.++|.-+++.+.|++.|++.++.... ..++|+.+..=+.....+|.|...|+..+..
T Consensus 410 aq~Li~~~~~-sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--- 484 (638)
T KOG1126|consen 410 AQDLIDTDPN-SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGV--- 484 (638)
T ss_pred HHHHHhhCCC-CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcC---
Confidence 2334443333 7899999999999999999999999999986433 7789999998899999999999999988753
Q ss_pred CCHhhHH---HHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 003295 600 PDIYTYG---VMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYS 676 (833)
Q Consensus 600 ~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 676 (833)
|+..|+ .+...|.+.++++.|+-.|++..+.++. +.+....+...+-+.|+.++|++++++......+ |+..--
T Consensus 485 -~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~ 561 (638)
T KOG1126|consen 485 -DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKY 561 (638)
T ss_pred -CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHH
Confidence 444554 4667899999999999999999988776 7788888888899999999999999999987643 554444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003295 677 SLIHGLCNIGLIEDAKCLFDEMRKEGLLP-NVACYTALIGGYCKLGQMDEAESVLQEMASIN 737 (833)
Q Consensus 677 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 737 (833)
-.+..+...+++++|+..++++.+. .| +...+..+...|.+.|+.+.|+.-|.-+.+..
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 5567777889999999999999984 55 45778888999999999999999999888754
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=1.1e-09 Score=108.59 Aligned_cols=286 Identities=11% Similarity=0.054 Sum_probs=184.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003295 510 AGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIEL 589 (833)
Q Consensus 510 ~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 589 (833)
.|++..|+++..+-.+.+.. ....|..-..+--..|+.+.+-.++.+..+.-..++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 46666666666665555444 33444444555555666666666666666553344445555555566666666666666
Q ss_pred HHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCH-------HHHHHHHHHHHHcCChHHHHHHHHH
Q 003295 590 WEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNP-------VVYNTLIRAYCKIGNTTAAFRLSND 662 (833)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~ 662 (833)
..++.+.+ +.+.........+|.+.|++.+...++.++.+.+.-.+. .+|+.+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 66665543 234455555666666666666666666666666554332 3455555554444444444445554
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 003295 663 MKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNK 742 (833)
Q Consensus 663 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 742 (833)
...+ .+.++..-.+++.-+.+.|+.++|.++..+..+++..|+. ..+ -...+-++.+.=++..++..+. .+.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~~-~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CRL-IPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HHH-HhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 4332 3445666667777888889999999988888887656651 112 2344566766666666666654 24556
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 743 ITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 743 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
..+.+|+..|.+++.+.+|.+.|+..++ ..|+..+|+.+.+++.+.|+.++|.+.+++.+.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 7888889999999999999999998887 468888999999999999999999888887764
No 61
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=4.2e-10 Score=107.90 Aligned_cols=293 Identities=13% Similarity=0.075 Sum_probs=223.9
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHH
Q 003295 509 EAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPD---NYTYNLLLHGLCSLGKMEE 585 (833)
Q Consensus 509 ~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~ 585 (833)
-..+.++|.++|-+|.+.... ...+.-+|.+.|.+.|..|.|+.+...+.++.--+. ......|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 357889999999999987433 455567789999999999999999999987621111 2345567778899999999
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCH----HHHHHHHHHHHHcCChHHHHHHHH
Q 003295 586 AIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNP----VVYNTLIRAYCKIGNTTAAFRLSN 661 (833)
Q Consensus 586 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~ 661 (833)
|.++|..+.+.+ .--......|+..|-+..+|++|+++-+++.+.+..+.. ..|.-+...+....+.+.|..+++
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999988754 233556778899999999999999999999988766543 345666666777789999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 003295 662 DMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPN 741 (833)
Q Consensus 662 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 741 (833)
+..+.+. ..+..-..+.+.....|+++.|.+.++...+.+..--..+...|..+|...|+.++....+.++.+.. ++
T Consensus 205 kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g 281 (389)
T COG2956 205 KALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TG 281 (389)
T ss_pred HHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CC
Confidence 9988753 34455556778889999999999999999987533345678889999999999999999999998853 44
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCC
Q 003295 742 KITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCK---GGNVEEAFKVCDRMLSEGL 808 (833)
Q Consensus 742 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~ 808 (833)
...-..+...-....-.+.|..++.+-+.+ .|+...+..|+..-.. .|...+-...++.|....+
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence 444445554444455567777777666663 6999888888887643 4567777788888876533
No 62
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=8e-10 Score=106.01 Aligned_cols=288 Identities=12% Similarity=0.071 Sum_probs=135.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhcCChhhHH
Q 003295 476 GKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDK---VTYNTLILGCCKDGKPEEGF 552 (833)
Q Consensus 476 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~ 552 (833)
++.++|.+.|-+|.+.. +....+.-+|.+.|-+.|..+.|+.+-+.+.++.--+.. .....|..-|...|-+|.|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 44555555555555531 113334445555555566666666655555544111111 12233444455555566666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HhhHHHHHHHHHccCCHHHHHHHHHHH
Q 003295 553 KLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPD----IYTYGVMIDGFCKADKIEEGETLFNEM 628 (833)
Q Consensus 553 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 628 (833)
.+|..+.+.+. .-......|+..|-...+|++|++.-+++.+.+-.+. ..-|--+...+....+.+.|..++.+.
T Consensus 128 ~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 66655555421 1334445555555555666666655555555432222 112333333334445555555555555
Q ss_pred HHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 003295 629 ISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVA 708 (833)
Q Consensus 629 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 708 (833)
.+..++ .+..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++...++.++.+.. +...
T Consensus 207 lqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~ 283 (389)
T COG2956 207 LQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGAD 283 (389)
T ss_pred HhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCcc
Confidence 554333 3333344445555556666666666655555433333444555555556666666665555555532 2222
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 003295 709 CYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCK---LGDMKEAAKLLNVMAE 770 (833)
Q Consensus 709 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~ 770 (833)
.-..+...-....-.+.|...+.+-... +|+...+..++..-.. .|..++-...++.|+.
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 2222222222222334444433333332 4555555555544322 2333444444444443
No 63
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=1.6e-09 Score=107.52 Aligned_cols=252 Identities=13% Similarity=0.100 Sum_probs=125.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 003295 475 NGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKL 554 (833)
Q Consensus 475 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 554 (833)
.|+.+.+-.++.++.+....++...+-+........|+++.|..-++++.+.++. +.........+|.+.|++.+...+
T Consensus 131 rgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~ 209 (400)
T COG3071 131 RGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAI 209 (400)
T ss_pred cccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHH
Confidence 3333333333333333322223333444444444444444444444444444433 344444444444444555444444
Q ss_pred HHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 003295 555 KEDMIKRGIQPDN-------YTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNE 627 (833)
Q Consensus 555 ~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 627 (833)
+..+.+.|.-.|. .+|..+++-....+..+.-...|+...+. ...++..-..++.-+.++|+.++|.++..+
T Consensus 210 l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~ 288 (400)
T COG3071 210 LPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIED 288 (400)
T ss_pred HHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4444444433222 24445555444444444444455544332 122344444555555666666666666666
Q ss_pred HHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 003295 628 MISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNV 707 (833)
Q Consensus 628 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 707 (833)
..+++..|... ..-.+.+-++.+.-.+..++..+.. +.++..+.+|...|.+.+.+.+|...|+...+. .|+.
T Consensus 289 ~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~ 361 (400)
T COG3071 289 ALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSA 361 (400)
T ss_pred HHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCCh
Confidence 66655444311 1112234455555555555444431 234455666666666666666666666666653 4666
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003295 708 ACYTALIGGYCKLGQMDEAESVLQEMAS 735 (833)
Q Consensus 708 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 735 (833)
.+|+.+.+++.+.|+..+|.+..++...
T Consensus 362 ~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 362 SDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6666666666666666666666666553
No 64
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1.1e-08 Score=106.16 Aligned_cols=459 Identities=17% Similarity=0.159 Sum_probs=231.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHH--HH--H
Q 003295 256 STAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSIL--IN--G 331 (833)
Q Consensus 256 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l--i~--~ 331 (833)
-+=++.+...|++++|.+...+++..+.. |...+..=+-++.+.+++++|+.+.+.-.. ..+++.. =. +
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYC 88 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHH
Confidence 34556677778888888888888776522 444555555566777888888755443221 1112222 23 3
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh-cCChh
Q 003295 332 LIKLEKFDDANFVLKEMSVRGFVPNY-VVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCK-SGQMD 409 (833)
Q Consensus 332 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~ 409 (833)
..+.++.++|...++ |..++. .+...-...+.+.|++++|..+|+.+.+.+.+ .+...+++-+- .+-.-
T Consensus 89 ~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHhh
Confidence 346777777777776 333332 24444455667777888888888777765432 22222222111 11001
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHH---HHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 003295 410 NAENALEEMLSRGLSINQGAYTSV---IKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCF 486 (833)
Q Consensus 410 ~A~~~l~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 486 (833)
.+. + +......| ..+|..+ ...+...|++.+|++++......+.+ .++ .++.. .
T Consensus 160 ~~~-~---~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e-----------~l~-~~d~~--e---- 216 (652)
T KOG2376|consen 160 QVQ-L---LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICRE-----------KLE-DEDTN--E---- 216 (652)
T ss_pred hHH-H---HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-----------hhc-ccccc--h----
Confidence 110 1 11111111 2233333 23344456666666665554221100 000 00000 0
Q ss_pred HHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH----HHHHHHHHhcCChh-hHHHHHHHHHH
Q 003295 487 RLFEKGFTVNT-VTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTY----NTLILGCCKDGKPE-EGFKLKEDMIK 560 (833)
Q Consensus 487 ~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~----~~li~~~~~~g~~~-~A~~~~~~m~~ 560 (833)
.++.... ..--.|.-.+-..|+.++|..++...++.++. |.... |.|+..-....-++ .++..++....
T Consensus 217 ----Eeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~ 291 (652)
T KOG2376|consen 217 ----EEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVF 291 (652)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHH
Confidence 0000000 12233455566778888888888887777654 44222 22222111111111 12222221111
Q ss_pred C-----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH-HH-HccCCHHHHHHHHHH
Q 003295 561 R-----------GIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMID-GF-CKADKIEEGETLFNE 627 (833)
Q Consensus 561 ~-----------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~-~~-~~~g~~~~A~~~~~~ 627 (833)
. ...-....=+.++..|. +..+.+.++...... ..|.. .+..++. ++ ++......|.+++..
T Consensus 292 ~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~ 366 (652)
T KOG2376|consen 292 KLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLPG--MSPES-LFPILLQEATKVREKKHKKAIELLLQ 366 (652)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCc--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 1 00001111122222222 333344443333221 12332 2333332 22 223357778888877
Q ss_pred HHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003295 628 MISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSN--------DMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMR 699 (833)
Q Consensus 628 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 699 (833)
..+..+.-...+.-.++......|+++.|++++. .+.+.+..|- +...+...+.+.++-+.|..++.+.+
T Consensus 367 ~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai 444 (652)
T KOG2376|consen 367 FADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAI 444 (652)
T ss_pred HhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHH
Confidence 7776555446666777777888899999988888 4444444444 34456666777777777777777765
Q ss_pred HC--CCCCChhHHHH----HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003295 700 KE--GLLPNVACYTA----LIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNV 767 (833)
Q Consensus 700 ~~--g~~p~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 767 (833)
.. .-.+....... ++..-.+.|+-++|..+++++.+.+ ++|..+...++.+|++. +.+.|..+-..
T Consensus 445 ~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 445 KWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 42 11122222333 3333446788889999999988864 67788888888888766 56777766554
No 65
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.39 E-value=4.4e-08 Score=102.97 Aligned_cols=470 Identities=16% Similarity=0.136 Sum_probs=225.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHH
Q 003295 290 YNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCK 369 (833)
Q Consensus 290 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~ 369 (833)
+..++..| ..+++...+++.+.+.++ .+.-..|.....-.++..|+-++|......-....+. +.+.|..+.-.+-.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 44455544 456667777766666653 2223334333334455667777776666655554332 45666666666666
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 003295 370 KGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHF 449 (833)
Q Consensus 370 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 449 (833)
..++++|++.|......+.. |...|.-+.-...+.|+++.....-.++.+. .+-....|..++.++.-.|+...|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQL-RPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777766664322 4555555555555566666665555555543 122344555555555566666666666
Q ss_pred HHHHHHCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 003295 450 TKEMLLRNL-RPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGL 528 (833)
Q Consensus 450 ~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~ 528 (833)
+.+..+... .|+...+......+ --.....+.|..++|.+.+..-... +
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~L-----------------------------y~n~i~~E~g~~q~ale~L~~~e~~-i 215 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLL-----------------------------YQNQILIEAGSLQKALEHLLDNEKQ-I 215 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHH-----------------------------HHHHHHHHcccHHHHHHHHHhhhhH-H
Confidence 655554431 22222221111100 0112233445555555555443322 1
Q ss_pred CCCHHHH-HHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHH-HHHHHHhhCCCCCCHhhH
Q 003295 529 ILDKVTY-NTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHG-LCSLGKMEEAI-ELWEECKRTVFGPDIYTY 605 (833)
Q Consensus 529 ~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~ 605 (833)
.|...+ .+-...+.+.+++++|..++..++.. .||..-|...... +.+-.+.-++. .+|....+.- +.....-
T Consensus 216 -~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y-~r~e~p~ 291 (700)
T KOG1156|consen 216 -VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY-PRHECPR 291 (700)
T ss_pred -HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-cccccch
Confidence 122222 22334455566666666666666654 3444444333322 22222222333 3444333321 1000000
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----CC----------CCCC
Q 003295 606 GVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKS----RG----------ILPT 671 (833)
Q Consensus 606 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~----------~~p~ 671 (833)
..=+....-..-.+..-+++..+.+.|+++ ++..+...|-.-...+--.++...+.. .| -+|.
T Consensus 292 Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pt 368 (700)
T KOG1156|consen 292 RLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPT 368 (700)
T ss_pred hccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCch
Confidence 000111111111222333444444554432 222222222211111111111111111 00 1333
Q ss_pred HH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 003295 672 SV--TYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNV-ACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIM 748 (833)
Q Consensus 672 ~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 748 (833)
.. ++-.++..+-+.|+++.|..+++.++.+ .|+. ..|..-...+...|++++|..++++..+.+ .+|...-.--
T Consensus 369 tllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKc 445 (700)
T KOG1156|consen 369 TLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKC 445 (700)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHH
Confidence 33 2344556666777777777777777764 4554 344455566777777777777777777765 4454443344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC--CH----HHHHH--HHHHHhcCCCHHHHHHHHHHHH
Q 003295 749 IGGYCKLGDMKEAAKLLNVMAEKGISP--DS----ITYNV--FMDGHCKGGNVEEAFKVCDRML 804 (833)
Q Consensus 749 i~~~~~~g~~~~A~~~~~~m~~~g~~p--~~----~~~~~--l~~~~~~~g~~~~A~~~~~~m~ 804 (833)
+.-..+.++.++|.++.......|... |. -.|.. =+.+|.++|++-+|++-|..+.
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 445556777777777777776655311 10 11222 2456667777766666555543
No 66
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=5.9e-07 Score=98.50 Aligned_cols=243 Identities=19% Similarity=0.187 Sum_probs=136.3
Q ss_pred CCChHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHHcCCCCccccCCCcchHHHHHHHHhhhhcc
Q 003295 94 NVNPKTALKFFYFASQSCNFRFTVRSYCLLIRLLLFSNLLSPARLLLIRLIDGKMPVLYASNPSIRHIEIASQMVDLNVT 173 (833)
Q Consensus 94 ~~~~~~a~~ff~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (833)
...|+.|-++. .+..|.|-- +..+++++-++|....|...+..+-+-. ++......
T Consensus 589 ~~aPqVADAIL----gN~mFtHyD--ra~IAqLCEKAGL~qraLehytDl~DIK-----------------R~vVhth~- 644 (1666)
T KOG0985|consen 589 VHAPQVADAIL----GNDMFTHYD--RAEIAQLCEKAGLLQRALEHYTDLYDIK-----------------RVVVHTHL- 644 (1666)
T ss_pred ccchHHHHHHH----hcccccccc--HHHHHHHHHhcchHHHHHHhcccHHHHH-----------------HHHHHhcc-
Confidence 34566665554 233465554 6678888889998887766554432110 00000000
Q ss_pred cCCcchhhhHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh--cC----
Q 003295 174 SEPALGVQIADLLVHVYCTQFKNLGFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMC--RG---- 247 (833)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~~---- 247 (833)
.. -+-|+. .+....+++++++++.|...+++.+..++-.+..-|..+=-.+..+++|+... +|
T Consensus 645 ----L~---pEwLv~----yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yf 713 (1666)
T KOG0985|consen 645 ----LN---PEWLVN----YFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYF 713 (1666)
T ss_pred ----CC---HHHHHH----HHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHH
Confidence 00 111111 12345678888888888888887787777777777776666666677776654 23
Q ss_pred ------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHH------------HH---------------cCCCCChhhH----
Q 003295 248 ------VSPDVFLFSTAINAFCKRGRIEDAIGLFTKM------------EE---------------LGIAPNVVTY---- 290 (833)
Q Consensus 248 ------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------------~~---------------~g~~p~~~~~---- 290 (833)
+..|.......|.+-|+.|.+.|..++-++- .+ .|+.+|.+.|
T Consensus 714 LgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrn 793 (1666)
T KOG0985|consen 714 LGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRN 793 (1666)
T ss_pred HHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHh
Confidence 4556666667899999999999888776552 11 1222333322
Q ss_pred --HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-----------hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 003295 291 --NNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLI-----------TYSILINGLIKLEKFDDANFVLKEMSVRGFVPNY 357 (833)
Q Consensus 291 --~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-----------t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 357 (833)
-..|..|.+.=+....-.+...+....+..|.. .-..|+.-.-+.+++.--...++.....|.. |.
T Consensus 794 n~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~ 872 (1666)
T KOG0985|consen 794 NLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DP 872 (1666)
T ss_pred hHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-ch
Confidence 123344444333333333333333332221111 1122333344556666666777777788876 88
Q ss_pred hhHHHHHHHHHHcCC
Q 003295 358 VVYNTLIDGYCKKGN 372 (833)
Q Consensus 358 ~~y~~li~~~~~~g~ 372 (833)
.+||+|...|...++
T Consensus 873 a~hnAlaKIyIDSNN 887 (1666)
T KOG0985|consen 873 ATHNALAKIYIDSNN 887 (1666)
T ss_pred HHHhhhhheeecCCC
Confidence 888888888776544
No 67
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.36 E-value=9.5e-08 Score=100.52 Aligned_cols=460 Identities=15% Similarity=0.116 Sum_probs=230.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 003295 255 FSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIK 334 (833)
Q Consensus 255 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 334 (833)
|..++.+| ..+++...+++.+.+.+. ..-...|....+-.++..|+-++|....+...... ..+.+.|.++.-.+..
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhh
Confidence 33344433 456667777777766663 22233444444444566677777777776665532 3455667777766667
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHH
Q 003295 335 LEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENA 414 (833)
Q Consensus 335 ~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 414 (833)
..++++|+..|......+.. |...|.-|.-.-.+.|+++.....-....+..+. ....|..++.++.-.|+...|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777765322 4566666665566667777666666666554221 445666677777777777777777
Q ss_pred HHHHHHCCC-CCCcccHHHHHH------HHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003295 415 LEEMLSRGL-SINQGAYTSVIK------WLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFR 487 (833)
Q Consensus 415 l~~~~~~g~-~~~~~~~~~li~------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 487 (833)
+++..+... .|+...+.-... .....|.+++|++.+..-.
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e--------------------------------- 212 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE--------------------------------- 212 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh---------------------------------
Confidence 777766532 334433332222 2233444455544433221
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH-HHHHhcCChhhHH-HHHHHHHHCC---
Q 003295 488 LFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLI-LGCCKDGKPEEGF-KLKEDMIKRG--- 562 (833)
Q Consensus 488 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li-~~~~~~g~~~~A~-~~~~~m~~~g--- 562 (833)
.. +......-..-...+.+.+++++|..++..++.++ ||...|.... .++.+-.+.-+++ .+|...-+.-
T Consensus 213 --~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 213 --KQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred --hH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 11 00011111223334445555555555555555543 2333333222 2222222222222 2333322210
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH----HCC------
Q 003295 563 IQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMI----SKK------ 632 (833)
Q Consensus 563 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~------ 632 (833)
-.|-....+. .....-.+..-.++....+.|+++- +..+...|-...+.+-..++.-++. ..|
T Consensus 288 e~p~Rlplsv----l~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 288 ECPRRLPLSV----LNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred ccchhccHHH----hCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccc
Confidence 0010000110 0001111222233333444443321 1222222211111110011111110 000
Q ss_pred ----CccCHHHHH--HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003295 633 ----MELNPVVYN--TLIRAYCKIGNTTAAFRLSNDMKSRGILPTSV-TYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLP 705 (833)
Q Consensus 633 ----~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 705 (833)
-+|....|. .++..+-+.|+++.|....+..... .|+.+ .|..=.+.+...|.+++|..++++..+.+ .|
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~a 437 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TA 437 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-ch
Confidence 134444443 4566677778888888888877765 44433 34444567778888888888888887764 45
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH--------HHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 003295 706 NVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKI--------TYTIM--IGGYCKLGDMKEAAKLLNVMA 769 (833)
Q Consensus 706 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------~~~~l--i~~~~~~g~~~~A~~~~~~m~ 769 (833)
|..+-.--+.-..++++.++|.++.......|. +.. +|-.+ +.+|.+.|++..|++-|....
T Consensus 438 DR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 438 DRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 655544555666677888888888877776653 221 23333 345777777777776665543
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=8.2e-08 Score=99.86 Aligned_cols=220 Identities=16% Similarity=0.138 Sum_probs=132.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH--HHHHH
Q 003295 220 TCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNN--IIHGL 297 (833)
Q Consensus 220 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~--li~~~ 297 (833)
.+-+=++.+...|++++|.+...+++.+.+.+...+.+-+-++.+.+++++|+.+.+.-.. ..+++. +=.+|
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAY 87 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAY 87 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHH
Confidence 3334456667888999999999999877778888888899999999999999965554332 112222 24555
Q ss_pred H--hcCChhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHH-HcCCh
Q 003295 298 C--RNGRLYEAFHLKEKMVLREVEPS-LITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYC-KKGNI 373 (833)
Q Consensus 298 ~--~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~-~~g~~ 373 (833)
| +.++.++|+..++ |+.++ ..+...-...+.+.|++++|..+|+.+.+.+.. .+...+.+-+ ..+-.
T Consensus 88 c~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a~~a~ 158 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLAVAAA 158 (652)
T ss_pred HHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHh
Confidence 5 7889999999887 33333 346666677888999999999999999876432 2222222111 11111
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHH---HHHhcCChhHHHHHHHHHHHCCC---C----CCcc-------cHHHHHHH
Q 003295 374 SEALKIRDDMVSKGMSPNSVTFNSLIH---GFCKSGQMDNAENALEEMLSRGL---S----INQG-------AYTSVIKW 436 (833)
Q Consensus 374 ~~A~~~~~~m~~~g~~p~~~~~~~li~---~~~~~g~~~~A~~~l~~~~~~g~---~----~~~~-------~~~~li~~ 436 (833)
..+. +.+ .....| ..+|..+.+ .+...|++.+|+++++.....+. . -+.. +-.-+.-+
T Consensus 159 l~~~-~~q---~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV 233 (652)
T KOG2376|consen 159 LQVQ-LLQ---SVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV 233 (652)
T ss_pred hhHH-HHH---hccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 1111 222 222223 234444443 45568999999999988843211 0 0000 11123334
Q ss_pred HHhcCChhHHHHHHHHHHHCCCC
Q 003295 437 LCINSRFNSALHFTKEMLLRNLR 459 (833)
Q Consensus 437 ~~~~g~~~~A~~~~~~~~~~~~~ 459 (833)
+...|+.++|.+++...+..+..
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRNPA 256 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhcCC
Confidence 45566666666666666665543
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.35 E-value=4e-10 Score=126.75 Aligned_cols=216 Identities=14% Similarity=0.064 Sum_probs=137.9
Q ss_pred cCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---------hcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 003295 197 LGFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLV---------KANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGR 267 (833)
Q Consensus 197 ~~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 267 (833)
+.++.|++.|++..+.++. +...|..+..++. ..+++++|...+++++.-.|.+..++..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 3456777778777766544 4455555544433 22346778888877775556677777777777777788
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHH
Q 003295 268 IEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSL-ITYSILINGLIKLEKFDDANFVLK 346 (833)
Q Consensus 268 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~li~~~~~~g~~~~A~~~~~ 346 (833)
+++|...|++..+.++. +...|..+...+...|++++|...++++.+.. |+. ..+..++..+...|++++|...++
T Consensus 354 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 354 YIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 88888888887776422 45567777777777888888888888777653 332 223334444566777777887777
Q ss_pred HHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003295 347 EMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSP-NSVTFNSLIHGFCKSGQMDNAENALEEMLS 420 (833)
Q Consensus 347 ~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~l~~~~~ 420 (833)
+..+....-+...+..+...|...|++++|.+.++++... .| +....+.+...|++.| ++|...++.+.+
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 7765432113444666667777778888888877776554 22 3334455555666666 366666666554
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.31 E-value=1.3e-09 Score=108.90 Aligned_cols=200 Identities=15% Similarity=0.108 Sum_probs=136.9
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003295 602 IYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHG 681 (833)
Q Consensus 602 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 681 (833)
...+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 344555666666677777777777766655433 45666667777777777777777777776653 3345566666777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003295 682 LCNIGLIEDAKCLFDEMRKEGL-LPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKE 760 (833)
Q Consensus 682 ~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 760 (833)
+...|++++|.+.++++.+... ......+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777776421 1233456667777778888888888888877653 3445677777888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 761 AAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 761 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
|...++++.+. .+.+...+..++..+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88888887775 234556666777777778888888887776654
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.30 E-value=1.2e-09 Score=109.24 Aligned_cols=201 Identities=14% Similarity=0.073 Sum_probs=146.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 003295 217 SLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHG 296 (833)
Q Consensus 217 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 296 (833)
....+..+...+.+.|++++|...|+++....+.+...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 35566777788888888888888888887545566777888888888888888888888888876432 45667777888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHH
Q 003295 297 LCRNGRLYEAFHLKEKMVLREVE-PSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISE 375 (833)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~~~~-p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~ 375 (833)
+...|++++|.+.+++....... .....+..+...+...|++++|...+++....... +...+..+...+.+.|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 88888888888888888764221 23345666777777888888888888887765321 35567777777888888888
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003295 376 ALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLS 420 (833)
Q Consensus 376 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~ 420 (833)
|.+.+++..+. .+.+...+..++..+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88888877765 233555666667777777888888777766654
No 72
>PF13041 PPR_2: PPR repeat family
Probab=99.30 E-value=5.1e-12 Score=90.45 Aligned_cols=49 Identities=49% Similarity=0.878 Sum_probs=21.1
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 003295 285 PNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLI 333 (833)
Q Consensus 285 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~ 333 (833)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||+++|++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
No 73
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=2.8e-07 Score=98.84 Aligned_cols=135 Identities=16% Similarity=0.075 Sum_probs=91.8
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh--cCC--------CCCHHHHHHHHHHHHh
Q 003295 195 KNLGFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMC--RGV--------SPDVFLFSTAINAFCK 264 (833)
Q Consensus 195 ~~~~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~~~--------~~~~~~~~~li~~~~~ 264 (833)
-.|+.+.|.+..+.+. +..+|..|.+.+++.++++-|.-.+-.|. +|. .++ .+=..+...-..
T Consensus 740 tiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred EeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 3577777776655443 56789999999999999998887776664 231 121 221222233356
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 003295 265 RGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFV 344 (833)
Q Consensus 265 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~ 344 (833)
.|.+++|..+|.+-++ |..|=..|-..|++++|.++-+.--.. .=-.||.....-+-..++.+.|++.
T Consensus 813 LgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHHHH
Confidence 7999999999998876 445556677889999999886543221 1234666667777778889999888
Q ss_pred HHHH
Q 003295 345 LKEM 348 (833)
Q Consensus 345 ~~~m 348 (833)
|++.
T Consensus 881 yEK~ 884 (1416)
T KOG3617|consen 881 YEKA 884 (1416)
T ss_pred HHhc
Confidence 8864
No 74
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=8.3e-07 Score=95.41 Aligned_cols=404 Identities=14% Similarity=0.115 Sum_probs=224.8
Q ss_pred CCHHHHHHHHHHHHhCCCchhHHHHHHHHHcCCCCccccCCCcchHHHHHHHHhhhhcccCCcchhhhHHHHHHHHHHhh
Q 003295 115 FTVRSYCLLIRLLLFSNLLSPARLLLIRLIDGKMPVLYASNPSIRHIEIASQMVDLNVTSEPALGVQIADLLVHVYCTQF 194 (833)
Q Consensus 115 ~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (833)
-+-..|..|++.+++.++++.|.-.+..|-... ...++.++..+ .+ ..... +.++ ..
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aR-----------gaRAlR~a~q~----~~-e~eak-----vAvL--Ai 811 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNAR-----------GARALRRAQQN----GE-EDEAK-----VAVL--AI 811 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhh-----------hHHHHHHHHhC----Cc-chhhH-----HHHH--HH
Confidence 345578899999999999999988888876533 11122222110 00 01111 1111 12
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 003295 195 KNLGFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGL 274 (833)
Q Consensus 195 ~~~~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 274 (833)
..|.+++|..+|++-.+. ..|=..|...|++++|.++-+.--+ + .=..||.....-+-..++.+.|++.
T Consensus 812 eLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DR-i-HLr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDR-I-HLRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccc-e-ehhhhHHHHHHHHHhhccHHHHHHH
Confidence 457789999999886653 3444556678999999888764321 1 2235677777778888999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHH-HHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 003295 275 FTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHL-KEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGF 353 (833)
Q Consensus 275 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 353 (833)
|++.... --.++. ++. +.-.+++. .+++ .|...|.-...-+-..|+++.|+.++....+
T Consensus 881 yEK~~~h----afev~r-mL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--- 940 (1416)
T KOG3617|consen 881 YEKAGVH----AFEVFR-MLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAKD--- 940 (1416)
T ss_pred HHhcCCh----HHHHHH-HHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhhh---
Confidence 9875321 111111 111 11222222 2222 2334444455555567778888777776654
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHH
Q 003295 354 VPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSV 433 (833)
Q Consensus 354 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~l 433 (833)
|-+++...|-.|+.++|-++-++-. |....-.|.+.|-..|++.+|..+|.++.. +...
T Consensus 941 ------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnA 999 (1416)
T KOG3617|consen 941 ------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNA 999 (1416)
T ss_pred ------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHH
Confidence 5667777777788888777766532 445555677777777888888777776543 3333
Q ss_pred HHHHHhcCChhH---------------HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH--------HHH
Q 003295 434 IKWLCINSRFNS---------------ALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFR--------LFE 490 (833)
Q Consensus 434 i~~~~~~g~~~~---------------A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~~ 490 (833)
|+.+-.++.-|+ |-+.|.+. | .-....+..|-+.|.+.+|+++.-+ ++.
T Consensus 1000 IRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g-----~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa 1071 (1416)
T KOG3617|consen 1000 IRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---G-----GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIA 1071 (1416)
T ss_pred HHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---c-----hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHH
Confidence 333222222111 11111111 0 0112233445566666666554322 111
Q ss_pred C--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCC-CCCCH
Q 003295 491 K--GFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRG-IQPDN 567 (833)
Q Consensus 491 ~--g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~ 567 (833)
+ ....|+...+.-.+.++...++++|..++-..++. ...+ .+|+..+..-..++-+.|.-.. -.|+.
T Consensus 1072 ~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~---------~~Al-qlC~~~nv~vtee~aE~mTp~Kd~~~~e 1141 (1416)
T KOG3617|consen 1072 KDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF---------SGAL-QLCKNRNVRVTEEFAELMTPTKDDMPNE 1141 (1416)
T ss_pred HhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHH-HHHhcCCCchhHHHHHhcCcCcCCCccH
Confidence 1 23346667777777777777888887777665542 1112 3444555444444444443211 22333
Q ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHH
Q 003295 568 ----YTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEE 620 (833)
Q Consensus 568 ----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 620 (833)
..+..+...|.+.|.+..|-+-|-+.-.+ -.-+.++.+.|+.++
T Consensus 1142 ~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1142 QERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcce
Confidence 34556677888888888887777654321 123455666666554
No 75
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=7.8e-12 Score=89.47 Aligned_cols=50 Identities=46% Similarity=0.972 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 003295 250 PDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCR 299 (833)
Q Consensus 250 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 299 (833)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||+++|++|||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78889999999999999999999999999999999999999999998875
No 76
>PRK12370 invasion protein regulator; Provisional
Probab=99.28 E-value=1.6e-09 Score=121.99 Aligned_cols=214 Identities=13% Similarity=0.013 Sum_probs=113.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHH
Q 003295 581 GKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLS 660 (833)
Q Consensus 581 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 660 (833)
+++++|...++++.+.. +.+...+..+...+...|++++|...|++.++..+. +...+..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 33556666666665543 224555555555666666666666666666665433 4555666666666666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 003295 661 NDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLP-NVACYTALIGGYCKLGQMDEAESVLQEMASINIH 739 (833)
Q Consensus 661 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 739 (833)
++..+.... +...+..++..+...|++++|...++++.+.. +| +...+..+..++...|+.++|...++++... .
T Consensus 396 ~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~ 471 (553)
T PRK12370 396 NECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--E 471 (553)
T ss_pred HHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--c
Confidence 666665322 22222233334455666677777766666542 23 3344555666666677777777776665542 2
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 740 PN-KITYTIMIGGYCKLGDMKEAAKLLNVMAEK-GISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 740 p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
|+ ....+.+...|+..| ++|...++++.+. ...+....+. ...+.-.|+.+.+..+ +++.+
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLL--PLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHH--HHHHHHHhhhHHHHHH-HHhhc
Confidence 32 334444445555555 3555555555442 1112222222 2223334555555554 55554
No 77
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.25 E-value=1.2e-07 Score=102.79 Aligned_cols=306 Identities=17% Similarity=0.111 Sum_probs=172.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHH-HHHHHh-
Q 003295 258 AINAFCKRGRIEDAIGLFTKMEELGIAPN-VVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSIL-INGLIK- 334 (833)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l-i~~~~~- 334 (833)
....+...|++++|++.+++-... -+| ...+......+.+.|+.++|...+..+++.+ ||...|... ..+..-
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhh
Confidence 345566778888888887775543 234 3444556677777788888888888887764 555554433 333311
Q ss_pred ----cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChH-HHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChh
Q 003295 335 ----LEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNIS-EALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMD 409 (833)
Q Consensus 335 ----~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 409 (833)
..+.+....+++++...- |......-+.-.+..-..+. .+..++..+..+|++ .+++.|-..|....+.+
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAA 160 (517)
T ss_pred cccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHH
Confidence 124566667777776552 33222222222222212222 344555666666654 24445555555444433
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHH
Q 003295 410 NAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGD--GLLTLLVSGLCKNGKQAEATELCFR 487 (833)
Q Consensus 410 ~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~ 487 (833)
-..+++.......-. .+.+...- ....-.|.. .++..+...|-..|++++|++.+++
T Consensus 161 ~i~~l~~~~~~~l~~---------------~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~ 219 (517)
T PF12569_consen 161 IIESLVEEYVNSLES---------------NGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDK 219 (517)
T ss_pred HHHHHHHHHHHhhcc---------------cCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 334444433321000 00000000 000011222 2445556667777777888887777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH
Q 003295 488 LFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDN 567 (833)
Q Consensus 488 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 567 (833)
.+++.+. .+..|..-...+-+.|++++|.+.++...+.+.. |...-+..+..+.+.|++++|.+++....+.+..|-.
T Consensus 220 aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~ 297 (517)
T PF12569_consen 220 AIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLS 297 (517)
T ss_pred HHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCccc
Confidence 7776432 4667777777888888888888888888777665 6666677777777888888888888777766543321
Q ss_pred --------HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 003295 568 --------YTYNLLLHGLCSLGKMEEAIELWEECKR 595 (833)
Q Consensus 568 --------~~~~~li~~~~~~g~~~~A~~~~~~~~~ 595 (833)
+-......+|.+.|++..|++.|..+.+
T Consensus 298 ~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 298 NLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1123345677777777777776665544
No 78
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.25 E-value=2.6e-07 Score=101.58 Aligned_cols=581 Identities=10% Similarity=-0.034 Sum_probs=303.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003295 199 FGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKM 278 (833)
Q Consensus 199 ~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 278 (833)
...|+..|-+..+.+.. =..+|..|...|...-+...|.+.|+.+..-...|...+-.....|.+..++++|..+.-..
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 45566666555555433 24466677777766667777777777776545566677777777777777777777763333
Q ss_pred HHcCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-
Q 003295 279 EELGIA-PNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPN- 356 (833)
Q Consensus 279 ~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~- 356 (833)
.+.... .-...|.-+.-.|...++...|...|+...... +.|...|..+..+|.+.|++..|.++|.+.... .|+
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s 629 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS 629 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh
Confidence 222100 001122223344556677777777777776653 446677777777777777777777777776654 333
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhCC------CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHC-------CC
Q 003295 357 YVVYNTLIDGYCKKGNISEALKIRDDMVSKG------MSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSR-------GL 423 (833)
Q Consensus 357 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~-------g~ 423 (833)
.+.---..-..|..|++.+|...+......- ..--..++-.+...+.-.|-...|..+++.-++. ..
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 2222223334566777777777776655420 0001112222222233334444444444443321 11
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH---H---HHHHHHHHHHHCCCCCCH
Q 003295 424 SINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQ---A---EATELCFRLFEKGFTVNT 497 (833)
Q Consensus 424 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~---~A~~~~~~~~~~g~~~~~ 497 (833)
..+...|..+.+ |..+|-... .+ .|+......+..-.-+.+.. + -+.+.+-.-. ....+.
T Consensus 710 ~~~~~~Wi~asd----------ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~ 775 (1238)
T KOG1127|consen 710 QSDRLQWIVASD----------ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHM 775 (1238)
T ss_pred hhhHHHHHHHhH----------HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhcc
Confidence 111111111111 111111111 00 12221111111111111211 1 0111111100 111234
Q ss_pred HHHHHHHHHHHh--------cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHH
Q 003295 498 VTSNALIHGMCE--------AGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYT 569 (833)
Q Consensus 498 ~~~~~li~~~~~--------~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 569 (833)
.+|..|+..|.+ ..+...|+..+.+..+..-. +..+|+.|.-. ...|++.-|..-|-+-+... +....+
T Consensus 776 ~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~ 852 (1238)
T KOG1127|consen 776 YPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQ 852 (1238)
T ss_pred chHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhh
Confidence 556666555544 12334677777777665433 66777776655 44566666666665555542 236677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH----HCCCccCHHHHHHHHH
Q 003295 570 YNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMI----SKKMELNPVVYNTLIR 645 (833)
Q Consensus 570 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~li~ 645 (833)
|..+...+.+..+++.|...|....... +.|...|-.........|+.-++..+|..-- ..|-.++..-|-....
T Consensus 853 W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te 931 (1238)
T KOG1127|consen 853 WLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATE 931 (1238)
T ss_pred eeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHH
Confidence 8778888888889999999988877653 3355566555555556777777777776521 1233344444444444
Q ss_pred HHHHcCChHHHHHHHHHHHh---------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhHHHH---
Q 003295 646 AYCKIGNTTAAFRLSNDMKS---------RGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKE-GLLPNVACYTA--- 712 (833)
Q Consensus 646 ~~~~~g~~~~A~~~~~~m~~---------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~--- 712 (833)
....+|+.++-+...+++.. .+.+.+...|........+.+.++.|.++..+.+.- ...-+...|+.
T Consensus 932 ~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~ 1011 (1238)
T KOG1127|consen 932 IHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKP 1011 (1238)
T ss_pred HHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 45566665554443333221 134556667777777777777777777776665431 11234444553
Q ss_pred -HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCH-HHHHHHHHHHhc
Q 003295 713 -LIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEK-GISPDS-ITYNVFMDGHCK 789 (833)
Q Consensus 713 -li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-~~~~~l~~~~~~ 789 (833)
+...++..|.++.|..-+..... ..+..+-..-+.. .-.|+++++.+.|+++..- .-..|. +....++.....
T Consensus 1012 ~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~ 1087 (1238)
T KOG1127|consen 1012 DAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGL 1087 (1238)
T ss_pred hhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhh
Confidence 33445556677655544332211 1122222222222 3467888888888888762 111232 344555556666
Q ss_pred CCCHHHHHHHHHHHHH
Q 003295 790 GGNVEEAFKVCDRMLS 805 (833)
Q Consensus 790 ~g~~~~A~~~~~~m~~ 805 (833)
++.-+.|...+-+...
T Consensus 1088 ~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1088 ARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred cccchHHHHHHHHHHH
Confidence 7777777776666554
No 79
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=1.1e-09 Score=104.93 Aligned_cols=228 Identities=14% Similarity=0.072 Sum_probs=105.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhH-HHHHHHHHc
Q 003295 536 NTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTY-GVMIDGFCK 614 (833)
Q Consensus 536 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~ 614 (833)
+.+..+|.+.|.+.+|.+.+...++. .|-+.||-.|-..|.+..+...|+.++.+-.+. .|..+|| ......+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 34455555555555555555555544 333444455555555555555555555554443 2222232 223344444
Q ss_pred cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003295 615 ADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCL 694 (833)
Q Consensus 615 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 694 (833)
.++.++|.++++...+.... ++.....+...|.-.++++-|+..++++.+.|+. +...|+.+.-+|.-.+.+|-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 45555555555555444322 3444444444444445555555555555555433 444444444444445555555555
Q ss_pred HHHHHHCCCCCC--hhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 695 FDEMRKEGLLPN--VACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 695 ~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
|++....--.|+ ..+|..+.......|++.-|.+.|+-....+ ..+...++.|.-.-.+.|++++|..+++.+..
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 554443321222 1234444444444455555555554444332 22334444444444445555555555444443
No 80
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=8.6e-10 Score=105.62 Aligned_cols=238 Identities=12% Similarity=0.023 Sum_probs=202.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 003295 566 DNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIR 645 (833)
Q Consensus 566 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 645 (833)
|-+.-+.+..+|.+.|.+.+|.+.++...+. .|-+.||..|-..|.+..+.+.|+.++.+-++.-+. |+.....+..
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~-~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hhhhhhhhHH
Confidence 4444567889999999999999999998876 578889999999999999999999999999887433 4444556777
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhH
Q 003295 646 AYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDE 725 (833)
Q Consensus 646 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 725 (833)
.+...++.++|.++++...+.. +.++....++..+|.-.++.|-|+.+++++++.|+ -+...|+.+.-+|.-.+++|-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhh
Confidence 8888999999999999998874 45777778888889999999999999999999984 578889999888889999999
Q ss_pred HHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003295 726 AESVLQEMASINIHPN--KITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRM 803 (833)
Q Consensus 726 A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 803 (833)
++.-|++..+.--.|+ ...|..+.......|++.-|.+-|+-.+..+ ..+...++.|.-.-.+.|+.++|..++...
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 9999999987544455 3579999999999999999999999988753 235588999999899999999999999988
Q ss_pred HHCCCCCC
Q 003295 804 LSEGLSLD 811 (833)
Q Consensus 804 ~~~g~~p~ 811 (833)
.. +.|+
T Consensus 456 ~s--~~P~ 461 (478)
T KOG1129|consen 456 KS--VMPD 461 (478)
T ss_pred hh--hCcc
Confidence 77 6666
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=5.1e-07 Score=89.79 Aligned_cols=293 Identities=13% Similarity=0.043 Sum_probs=184.8
Q ss_pred hcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 003295 474 KNGKQAEATELCFRLFEK-GFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGF 552 (833)
Q Consensus 474 ~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 552 (833)
-.++...|...+-.+... -++.|+.....+..++...|+.++|...|++....++. +....-.....+.+.|+.+...
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHH
Confidence 344444444444333332 35557777788888888888888888888887765322 2222222233445677777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 003295 553 KLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKK 632 (833)
Q Consensus 553 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 632 (833)
.+...+....- -....|..-+......++++.|+.+-++.++.. +.+...|-.-...+...|+.++|.-.|+..+...
T Consensus 287 ~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 287 ALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 77766665421 122223333334445677777877777776643 2233344334456677788888888888777664
Q ss_pred CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHCCCCCCh-hH
Q 003295 633 MELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLI-HGLCN-IGLIEDAKCLFDEMRKEGLLPNV-AC 709 (833)
Q Consensus 633 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li-~~~~~-~g~~~~A~~~~~~m~~~g~~p~~-~~ 709 (833)
+- +...|..++..|...|++.+|..+-+...+. ++.+..+.+.+. ..|.- ...-++|.+++++..+. .|+- ..
T Consensus 365 p~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~A 440 (564)
T KOG1174|consen 365 PY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPA 440 (564)
T ss_pred hh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHH
Confidence 33 6778888888888888888877766665543 233555555442 22222 22346788888877763 4543 44
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003295 710 YTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDS 777 (833)
Q Consensus 710 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 777 (833)
.+.+...+...|+.++++.++++... ..||....+.|.+.+...+.+.+|.+.|..++. +.|+.
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 56667777778888888888888776 467888888888888888888888888888777 44543
No 82
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.22 E-value=2.5e-07 Score=100.50 Aligned_cols=130 Identities=14% Similarity=0.064 Sum_probs=97.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003295 499 TSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLC 578 (833)
Q Consensus 499 ~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 578 (833)
++.-+...|...|++++|++.+++.++..+. .+..|..-...+-+.|++++|.+.++........ |...-+-.+..+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHH
Confidence 4466678888889999999999988888554 5677888888888899999999999988887655 6676677778888
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHhh--------HHHHHHHHHccCCHHHHHHHHHHHHH
Q 003295 579 SLGKMEEAIELWEECKRTVFGPDIYT--------YGVMIDGFCKADKIEEGETLFNEMIS 630 (833)
Q Consensus 579 ~~g~~~~A~~~~~~~~~~~~~~~~~~--------~~~li~~~~~~g~~~~A~~~~~~~~~ 630 (833)
+.|++++|.+++....+.+..|.... ......+|.+.|++..|++.|..+.+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88999999998888877654332211 12345667778888888777666554
No 83
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.22 E-value=6e-07 Score=98.83 Aligned_cols=624 Identities=11% Similarity=-0.012 Sum_probs=296.9
Q ss_pred hhHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCC--HHHHHHH
Q 003295 181 QIADLLVHVYCTQFKNLGFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPD--VFLFSTA 258 (833)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l 258 (833)
+.+..|...|+... +...|.++|+..-+.+.. +..++-...+.|++...+++|..+.-...+..+-- ...|.-.
T Consensus 493 paf~~LG~iYrd~~---Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~r 568 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSD---DMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQR 568 (1238)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhc
Confidence 45667777776432 445788999988777655 78889999999999999999999843332211111 2234345
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCC
Q 003295 259 INAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSL-ITYSILINGLIKLEK 337 (833)
Q Consensus 259 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~li~~~~~~g~ 337 (833)
.-.|.+.++...|..-|+...+..+. |...|..++.+|.+.|++..|.++|.++... .|+. +.---.....|..|+
T Consensus 569 G~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~Gk 645 (1238)
T KOG1127|consen 569 GPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGK 645 (1238)
T ss_pred cccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhh
Confidence 55677889999999999999886543 7788999999999999999999999998875 3443 222223344578899
Q ss_pred hhHHHHHHHHHHHC------CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHh-------CCCCCChhHHHHHHHHHH-
Q 003295 338 FDDANFVLKEMSVR------GFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVS-------KGMSPNSVTFNSLIHGFC- 403 (833)
Q Consensus 338 ~~~A~~~~~~m~~~------g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~- 403 (833)
+.+|...+...... +..--..++..+...+.-.|-..+|...+++-++ .....+...|-.+.+++.
T Consensus 646 Ykeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~ 725 (1238)
T KOG1127|consen 646 YKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYI 725 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHH
Confidence 99999998887643 1111122333333333344444444444444332 211122333322222211
Q ss_pred --hcCChhH----HHHH-HHHHHHCC--------------------CCCCcccHHHHHHHHHh------cC--ChhHHHH
Q 003295 404 --KSGQMDN----AENA-LEEMLSRG--------------------LSINQGAYTSVIKWLCI------NS--RFNSALH 448 (833)
Q Consensus 404 --~~g~~~~----A~~~-l~~~~~~g--------------------~~~~~~~~~~li~~~~~------~g--~~~~A~~ 448 (833)
... .+- -..+ +.+....+ ...+..+|..++..|.+ .+ +...|+.
T Consensus 726 f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~ 804 (1238)
T KOG1127|consen 726 FSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIR 804 (1238)
T ss_pred HHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHH
Confidence 100 000 0000 11111111 11223334444333332 01 1123334
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 003295 449 FTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGL 528 (833)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~ 528 (833)
.++..++... .+..+++.|.-. ...|.+.-|..-|-+-... .+.+..+|..+...+.+..+++.|...|.......+
T Consensus 805 c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP 881 (1238)
T KOG1127|consen 805 CCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDP 881 (1238)
T ss_pred HHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhhcCc
Confidence 4433333211 122233333222 3334444444333333222 122444555555555555555555555555555443
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHH--HH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---------
Q 003295 529 ILDKVTYNTLILGCCKDGKPEEGFKLKEDM--IK--RGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKR--------- 595 (833)
Q Consensus 529 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------- 595 (833)
. |...|-.........|+.-++..+|..- .. .|--++..-+..........|+.++-+...+.+..
T Consensus 882 ~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf 960 (1238)
T KOG1127|consen 882 L-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYF 960 (1238)
T ss_pred h-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHH
Confidence 3 4444444444444455555555555441 11 11222322222222233344444443333333221
Q ss_pred CCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC-CCccCHHHHHHH----HHHHHHcCChHHHHHHHHHHHhCCCCC
Q 003295 596 TVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISK-KMELNPVVYNTL----IRAYCKIGNTTAAFRLSNDMKSRGILP 670 (833)
Q Consensus 596 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~~~~p 670 (833)
.+.+.+...|.......-+.+.+.+|.+...+.+.. ..+-+...|+.. ...++..|.++.|..-+..... ..
T Consensus 961 ~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---ev 1037 (1238)
T KOG1127|consen 961 LGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EV 1037 (1238)
T ss_pred hcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hH
Confidence 112223334444444444444444444444443211 011233334422 1222233333322222211110 00
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 003295 671 TSVTYSSLIHGLCNIGLIEDAKCLFDEMRKE-GLLPN-VACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIM 748 (833)
Q Consensus 671 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 748 (833)
+...-..-+. ..-.++++++.+.|+++..- .-..+ ++....++.+....+.-+.|...+-+..... +|+..+.-.+
T Consensus 1038 dEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls-~~~~~sll~L 1115 (1238)
T KOG1127|consen 1038 DEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLS-KVQASSLLPL 1115 (1238)
T ss_pred HHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhC-ccchhhHHHH
Confidence 1111111111 12346666777777766542 11222 2334444455556666666666655555442 4555555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHhhc
Q 003295 749 IGGYCKLGDMKEAAKLLNVMAEK----GISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSLD-EITYTTLIDGWQ 823 (833)
Q Consensus 749 i~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~ 823 (833)
...+.-..+-.....+.+++... -+.-+..... -..|.+.|+-....+.+++..- ..|. ...|..|-.-|.
T Consensus 1116 ~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~--e~i~~~~~r~~~vk~~~qr~~h--~~P~~~~~WslL~vrya 1191 (1238)
T KOG1127|consen 1116 PAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLK--ELIYALQGRSVAVKKQIQRAVH--SNPGDPALWSLLSVRYA 1191 (1238)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHH--HHHHHHhhhhHHHHHHHHHHHh--cCCCChHHHHHHHHHHH
Confidence 44444333333333333333321 1111111111 1235567787778888888776 3444 677776654444
Q ss_pred cC
Q 003295 824 SS 825 (833)
Q Consensus 824 ~~ 825 (833)
++
T Consensus 1192 ~~ 1193 (1238)
T KOG1127|consen 1192 QR 1193 (1238)
T ss_pred HH
Confidence 33
No 84
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.6e-06 Score=86.41 Aligned_cols=292 Identities=14% Similarity=0.029 Sum_probs=217.9
Q ss_pred HhcCCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHH
Q 003295 508 CEAGNLKEAGKLLMEMLQRG-LILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDN-YTYNLLLHGLCSLGKMEE 585 (833)
Q Consensus 508 ~~~g~~~~A~~~l~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~ 585 (833)
+-.++...|...+--+.... ++-|......+...+...|+.++|...|++.... .|+. .......-.+.+.|+.++
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhh
Confidence 33455555555444443333 3446677888999999999999999999998875 3332 222333445567788888
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003295 586 AIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKS 665 (833)
Q Consensus 586 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 665 (833)
...+...+.... +-....|-.-........+++.|+.+-++.++.... +...|-.-...+...|++++|.-.|+..+.
T Consensus 285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 285 DSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 888777766532 123333444445556688999999999999887544 566666667788899999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHH-HHHHh-cCChhHHHHHHHHHHhCCCCCCH-
Q 003295 666 RGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALI-GGYCK-LGQMDEAESVLQEMASINIHPNK- 742 (833)
Q Consensus 666 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li-~~~~~-~g~~~~A~~~~~~m~~~g~~p~~- 742 (833)
.. +-+...|..|+..|...|++.+|..+-....+. ++.+..+.+.+. ..+.- ...-++|.+++++... +.|+.
T Consensus 363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~ 438 (564)
T KOG1174|consen 363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYT 438 (564)
T ss_pred cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccH
Confidence 63 347889999999999999999999888877764 344566666553 33332 2335889999998886 45664
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC
Q 003295 743 ITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSLD 811 (833)
Q Consensus 743 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 811 (833)
...+.+...|...|++++++.++++.+. ..||....+.|+..+...+.+++|.+.|...+. +.|.
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~ 503 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPK 503 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCcc
Confidence 4677888889999999999999999988 579999999999999999999999999999988 5666
No 85
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.18 E-value=1.6e-08 Score=108.01 Aligned_cols=253 Identities=21% Similarity=0.179 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----CC-CCCHh-hHHHHHHHHHccCCHHHHHHHHHHHHHC-----CCc
Q 003295 567 NYTYNLLLHGLCSLGKMEEAIELWEECKRT-----VF-GPDIY-TYGVMIDGFCKADKIEEGETLFNEMISK-----KME 634 (833)
Q Consensus 567 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~ 634 (833)
..+...+...|...|+++.|..+++...+. |. .|... ..+.+...|...+++++|..+|++++.. |..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345666888888889999998888877653 21 12222 2334667788899999999999888753 221
Q ss_pred --cCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC---C
Q 003295 635 --LNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSR-----GI-LPTSV-TYSSLIHGLCNIGLIEDAKCLFDEMRKE---G 702 (833)
Q Consensus 635 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g 702 (833)
.-..+++.|..+|++.|++++|...+++..+. +. .|... .++.++..++..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 12356777778899999999988888776532 21 22222 3667778889999999999999987653 1
Q ss_pred CCC----ChhHHHHHHHHHHhcCChhHHHHHHHHHHhC-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 003295 703 LLP----NVACYTALIGGYCKLGQMDEAESVLQEMASI-----N--IHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAE- 770 (833)
Q Consensus 703 ~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 770 (833)
..+ -..+++.|...|.+.|++++|++++++++.. | ..-....++.|...|.+.+++.+|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 112 2367899999999999999999999998752 1 112245788899999999999999999988653
Q ss_pred ---cCC-CCCH-HHHHHHHHHHhcCCCHHHHHHHHHHHHH------CCCCCCHHHHHHHH
Q 003295 771 ---KGI-SPDS-ITYNVFMDGHCKGGNVEEAFKVCDRMLS------EGLSLDEITYTTLI 819 (833)
Q Consensus 771 ---~g~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~------~g~~p~~~~~~~l~ 819 (833)
.|. .|+. .+|..|+..|.+.|++++|.++.+.... .+..|+........
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRL 498 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhh
Confidence 221 2333 6899999999999999999999887763 13445544444433
No 86
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.16 E-value=2e-08 Score=107.33 Aligned_cols=203 Identities=24% Similarity=0.189 Sum_probs=99.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 003295 467 LLVSGLCKNGKQAEATELCFRLFEK-----GF--TVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLI 539 (833)
Q Consensus 467 ~li~~~~~~g~~~~A~~~~~~~~~~-----g~--~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li 539 (833)
.+...|...+++++|..+|++++.. |. +.-..+++.|...|++.|++++|...+++..+.
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I------------- 312 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI------------- 312 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH-------------
Confidence 3555666677777777766665542 21 112346677777788888888887777665432
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCCC----HhhHHHHHH
Q 003295 540 LGCCKDGKPEEGFKLKEDMIKRGI-QPDN-YTYNLLLHGLCSLGKMEEAIELWEECKRT---VFGPD----IYTYGVMID 610 (833)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~m~~~g~-~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~li~ 610 (833)
++. ..|. .|.+ ..++.+...++..+++++|..+++...+. -+.++ ..+++.|..
T Consensus 313 ---------------~~~--~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~ 375 (508)
T KOG1840|consen 313 ---------------YEK--LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAE 375 (508)
T ss_pred ---------------HHH--hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 111 0000 0111 12333444444555555555555433221 01111 234555555
Q ss_pred HHHccCCHHHHHHHHHHHHHCC-------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----CC--CCCCHHHHHH
Q 003295 611 GFCKADKIEEGETLFNEMISKK-------MELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKS----RG--ILPTSVTYSS 677 (833)
Q Consensus 611 ~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~--~~p~~~~~~~ 677 (833)
.|.+.|++++|++++++.+... ..-....++.+...|.+.+++.+|.++|.+... .| .+....+|..
T Consensus 376 l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~n 455 (508)
T KOG1840|consen 376 LYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLN 455 (508)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHH
Confidence 5555555555555555554320 001123444555555555555555555544321 11 1112344555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 003295 678 LIHGLCNIGLIEDAKCLFDEMR 699 (833)
Q Consensus 678 li~~~~~~g~~~~A~~~~~~m~ 699 (833)
|...|...|++++|.++.+...
T Consensus 456 L~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 456 LAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHcccHHHHHHHHHHHH
Confidence 6666666666666666655554
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.12 E-value=2.8e-08 Score=102.28 Aligned_cols=218 Identities=12% Similarity=-0.045 Sum_probs=152.6
Q ss_pred CHHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 003295 198 GFGYAIDVFSIFSSKGI-FP--SLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGL 274 (833)
Q Consensus 198 ~~~~A~~~f~~~~~~~~-~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 274 (833)
..+.++.-+.+++.... .| ....|..+...+.+.|+.++|...|++.++..|.+...|+.+...+...|++++|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34567777766665322 22 2456788888899999999999999999866677889999999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 003295 275 FTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFV 354 (833)
Q Consensus 275 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 354 (833)
|++..+..+. +..+|..++..+...|++++|.+.|++..+.. |+..............++.++|...|++..... .
T Consensus 121 ~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~ 196 (296)
T PRK11189 121 FDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-D 196 (296)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-C
Confidence 9999886433 46678888888889999999999999998763 443322222223345678999999997765432 2
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHhC---CC--CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 003295 355 PNYVVYNTLIDGYCKKGNISEALKIRDDMVSK---GM--SP-NSVTFNSLIHGFCKSGQMDNAENALEEMLSRGL 423 (833)
Q Consensus 355 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p-~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~ 423 (833)
|+...+ . ..+...|+..++ +.++.+.+. .+ .| ....|..+...+.+.|++++|...|++..+.++
T Consensus 197 ~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 197 KEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred ccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 333222 2 233345666554 344444421 11 11 235788888888899999999999998887653
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.10 E-value=8.2e-08 Score=88.44 Aligned_cols=206 Identities=15% Similarity=0.070 Sum_probs=148.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003295 605 YGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCN 684 (833)
Q Consensus 605 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 684 (833)
...|.-+|...|+...|..-+++.++..+. +..+|..+...|.+.|..+.|.+.|++..+.. +-+-.+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 444566777888888888888888877655 67778888888888888888888888887764 3355667777777888
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003295 685 IGLIEDAKCLFDEMRKEGLL-PNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAK 763 (833)
Q Consensus 685 ~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 763 (833)
.|++++|...|++....-.- --..+|..+.-+..+.|+.+.|...|++..+.. +-...+...+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 88888888888888774111 123567777777778888888888888888754 4445667777788888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003295 764 LLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSLDEITYT 816 (833)
Q Consensus 764 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 816 (833)
+++.....+ .++.......|+.--+.|+.+.|.++=..+.. .-|....|-
T Consensus 195 ~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q 244 (250)
T COG3063 195 YLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQ 244 (250)
T ss_pred HHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHH
Confidence 888877765 37777777777777777887777776555554 345544443
No 89
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.09 E-value=2.1e-06 Score=91.13 Aligned_cols=193 Identities=18% Similarity=0.160 Sum_probs=101.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCH
Q 003295 539 ILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKI 618 (833)
Q Consensus 539 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 618 (833)
+.+......+.+|+.+++.+..+.. -..-|..+.+-|...|+++.|.++|-+.- .++--|++|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 3344455566666666666655422 22334555566666666666666664321 234455666666666
Q ss_pred HHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003295 619 EEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEM 698 (833)
Q Consensus 619 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 698 (833)
+.|.++-.+.. |+......|-+-..-+-+.|++.+|.++|-.. | .|+. .|..|-+.|..+..+++.++-
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 66666655442 33444455555555555666666666555332 2 2222 344555666666655555443
Q ss_pred HHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003295 699 RKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLL 765 (833)
Q Consensus 699 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 765 (833)
.-. .-..|...+..-|-..|++..|+..|-+..+ |.+-+..|...+.+++|.++.
T Consensus 877 h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 877 HGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred Chh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHH
Confidence 211 1122334455556666666666666555432 334455566666666665543
No 90
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.06 E-value=1.3e-05 Score=85.41 Aligned_cols=492 Identities=15% Similarity=0.108 Sum_probs=205.6
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 003295 224 LLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRL 303 (833)
Q Consensus 224 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 303 (833)
-|..|.+.|....|......- .....|.....-+..++.+..-++.|-++|+++.. | ...+..|-+..-+
T Consensus 621 aiqlyika~~p~~a~~~a~n~-~~l~~de~il~~ia~alik~elydkagdlfeki~d----~-----dkale~fkkgdaf 690 (1636)
T KOG3616|consen 621 AIQLYIKAGKPAKAARAALND-EELLADEEILEHIAAALIKGELYDKAGDLFEKIHD----F-----DKALECFKKGDAF 690 (1636)
T ss_pred HHHHHHHcCCchHHHHhhcCH-HHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----H-----HHHHHHHHcccHH
Confidence 345555555555444332111 11233444455555555555555555555555542 1 1122222222233
Q ss_pred hHHHHHHHHHHhCCCCCChhhH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 003295 304 YEAFHLKEKMVLREVEPSLITY-SILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDD 382 (833)
Q Consensus 304 ~~A~~~~~~m~~~~~~p~~~t~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~ 382 (833)
.+|+++-+-.. +..+++. ......+...|+++.|...|-+... .-.-+.+......+.+|+.+++.
T Consensus 691 ~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildn 757 (1636)
T KOG3616|consen 691 GKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDN 757 (1636)
T ss_pred HHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHH
Confidence 34444332211 1122221 1122333444555555544443321 11123333444555556655555
Q ss_pred HHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 003295 383 MVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGD 462 (833)
Q Consensus 383 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 462 (833)
+..+.. -.--|..+.+.|...|+++.|.++|.+. ..++..|..|.+.|++++|.++-.+. .|.....
T Consensus 758 iqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~--~~~e~t~ 824 (1636)
T KOG3616|consen 758 IQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATI 824 (1636)
T ss_pred hhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHh--cCchhHH
Confidence 544321 1223444555555566666666555442 23445555555555555555544332 2222223
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003295 463 GLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGC 542 (833)
Q Consensus 463 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~ 542 (833)
..|..-..-+-+.|++.+|.+++-.+.+ | ...|.+|-+.|..++.+++..+-...- -..|...+..-+
T Consensus 825 ~~yiakaedldehgkf~eaeqlyiti~~----p-----~~aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~ 892 (1636)
T KOG3616|consen 825 SLYIAKAEDLDEHGKFAEAEQLYITIGE----P-----DKAIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKEL 892 (1636)
T ss_pred HHHHHhHHhHHhhcchhhhhheeEEccC----c-----hHHHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHH
Confidence 3333334444455555555554432221 1 123444555555555555544432110 123333444444
Q ss_pred HhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHH
Q 003295 543 CKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGE 622 (833)
Q Consensus 543 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 622 (833)
-..|+...|...|-+.-+ |.+-++.|-..+-+++|.++-+ ..| ..+..- .+.-.+.+.=--+.|.
T Consensus 893 e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriak---teg-g~n~~k--~v~flwaksiggdaav 957 (1636)
T KOG3616|consen 893 EAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAK---TEG-GANAEK--HVAFLWAKSIGGDAAV 957 (1636)
T ss_pred HhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHh---ccc-cccHHH--HHHHHHHHhhCcHHHH
Confidence 555555555544433221 2333344444444444433321 111 011110 1111122222223333
Q ss_pred HHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003295 623 TLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEG 702 (833)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 702 (833)
+++++. | ....-|+--+..+.++-|+++-+-..+.. .|.+ ...+...+...|++++|-+.+-+.++.+
T Consensus 958 kllnk~---g------ll~~~id~a~d~~afd~afdlari~~k~k-~~~v--hlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 958 KLLNKH---G------LLEAAIDFAADNCAFDFAFDLARIAAKDK-MGEV--HLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HHHHhh---h------hHHHHhhhhhcccchhhHHHHHHHhhhcc-Cccc--hhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 333321 0 11222333455566666666665554432 1222 2223334556777777777776666532
Q ss_pred CCCChhHHHHH-----HHHHHhcC-ChhHHHHHHHHHH--------hCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHH
Q 003295 703 LLPNVACYTAL-----IGGYCKLG-QMDEAESVLQEMA--------SINIHPN--KITYTIMIGGYCKLGDMKEAAKLLN 766 (833)
Q Consensus 703 ~~p~~~~~~~l-----i~~~~~~g-~~~~A~~~~~~m~--------~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~ 766 (833)
.-..||... =.-+.+.| +.++|..+|-.-. ....-|+ ...|..-.++-...|++.+|..++-
T Consensus 1026 --tynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fll 1103 (1636)
T KOG3616|consen 1026 --TYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLL 1103 (1636)
T ss_pred --cccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhhee
Confidence 111111110 01122333 3444444432100 0001222 2234445555666777777776655
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 003295 767 VMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCD 801 (833)
Q Consensus 767 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 801 (833)
++. +|+.. ++.|...+.|..|+++.+
T Consensus 1104 ran----kp~i~-----l~yf~e~~lw~dalri~k 1129 (1636)
T KOG3616|consen 1104 RAN----KPDIA-----LNYFIEAELWPDALRIAK 1129 (1636)
T ss_pred ecC----CCchH-----HHHHHHhccChHHHHHHH
Confidence 432 35542 233455666666665543
No 91
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.05 E-value=1.1e-07 Score=97.97 Aligned_cols=217 Identities=13% Similarity=-0.024 Sum_probs=106.8
Q ss_pred cCChhhHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHH
Q 003295 545 DGKPEEGFKLKEDMIKRGI-QP--DNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEG 621 (833)
Q Consensus 545 ~g~~~~A~~~~~~m~~~g~-~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 621 (833)
.+..+.++.-+.+++.... .| ....|..+...+.+.|+.++|...|++..+.. +.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3445566666666664321 11 12345555556666666666666666665543 23455566666666666666666
Q ss_pred HHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003295 622 ETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKE 701 (833)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 701 (833)
...|+..++..+. +..+|..+..++...|++++|++.+++..+.. |+..........+...++.++|...|.+....
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 6666666655433 44555556666666666666666666665542 22211111111223345566666666554432
Q ss_pred CCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhC---C--C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 702 GLLPNVACYTALIGGYCKLGQMDEAESVLQEMASI---N--I-HPNKITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 702 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g--~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
. .|+...+ .......|+..++ +.++.+.+. . + +.....|..++..+.+.|++++|+..|+++++
T Consensus 195 ~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 195 L-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred C-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 2222111 1122234444433 233333311 0 0 01123555556666666666666666666655
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.6e-06 Score=89.86 Aligned_cols=106 Identities=25% Similarity=0.221 Sum_probs=80.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcC
Q 003295 258 AINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPS-LITYSILINGLIKLE 336 (833)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g 336 (833)
-.++.+..|+++.|...|.+.+...+. |-+.|..-..+|.+.|++++|.+=-.+-++. .|+ ...|+-...++.-.|
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcc
Confidence 356677889999999999888876543 7788888888889999998888766665554 444 466888888888888
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 003295 337 KFDDANFVLKEMSVRGFVPNYVVYNTLIDGY 367 (833)
Q Consensus 337 ~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~ 367 (833)
++++|+.-|.+=++... .|...++.|.+++
T Consensus 85 ~~~eA~~ay~~GL~~d~-~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDP-SNKQLKTGLAQAY 114 (539)
T ss_pred cHHHHHHHHHHHhhcCC-chHHHHHhHHHhh
Confidence 99999988888877632 2456667777766
No 93
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.00 E-value=3.8e-07 Score=84.17 Aligned_cols=209 Identities=16% Similarity=0.074 Sum_probs=162.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHH
Q 003295 569 TYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYC 648 (833)
Q Consensus 569 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 648 (833)
+...|.-+|...|+...|..-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++.++..+. +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 34456667888888888888888888764 334667888888888888888888888888887665 7778888888889
Q ss_pred HcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHH
Q 003295 649 KIGNTTAAFRLSNDMKSRG-ILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAE 727 (833)
Q Consensus 649 ~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 727 (833)
..|++++|...|++....- ...-..+|..+.-+..+.|+.+.|...|++.++.. +-...+.-.+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 9999999999998887752 12234577778777888999999999999998863 234456677888888899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003295 728 SVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVF 783 (833)
Q Consensus 728 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 783 (833)
.+++.....+ .++..+....|+.-...|+.+.|-++=..+.. .-|...-|...
T Consensus 194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q~f 246 (250)
T COG3063 194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQTF 246 (250)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHhH
Confidence 9999888776 48888888888888888998888887777666 35665555443
No 94
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.8e-06 Score=89.37 Aligned_cols=221 Identities=15% Similarity=0.051 Sum_probs=119.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HH
Q 003295 432 SVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNA-------LI 504 (833)
Q Consensus 432 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-------li 504 (833)
.+.+...+..+++.|++-+....... .+..-++....+|...|++.++.......++.|.. ...-|+. +.
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhh
Confidence 34444455555555555555544443 23333444445555555555555555554444322 1111221 23
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003295 505 HGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKME 584 (833)
Q Consensus 505 ~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 584 (833)
..|.+.++++.|+..|.+.......|+. ..+....+++.+..+...-.+... ..-...-...+.+.|++.
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHH
Confidence 3455556677777777765554333222 122333445555444444332221 111222255566777777
Q ss_pred HHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003295 585 EAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMK 664 (833)
Q Consensus 585 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 664 (833)
.|...|.+++... +.|...|....-+|.+.|.+..|+.-.+..++..+. ....|..-..++....++++|.+.|.+.+
T Consensus 376 ~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 376 EAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776664 445667777777777777777777776666666332 44455555566666677777888777777
Q ss_pred hCC
Q 003295 665 SRG 667 (833)
Q Consensus 665 ~~~ 667 (833)
+..
T Consensus 454 e~d 456 (539)
T KOG0548|consen 454 ELD 456 (539)
T ss_pred hcC
Confidence 663
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.99 E-value=2.5e-06 Score=91.37 Aligned_cols=304 Identities=13% Similarity=0.042 Sum_probs=146.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCH-HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003295 499 TSNALIHGMCEAGNLKEAGKLLMEMLQRGL-ILDK-VTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHG 576 (833)
Q Consensus 499 ~~~~li~~~~~~g~~~~A~~~l~~m~~~g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 576 (833)
.|..+...+...|+.+++...+....+... .++. .........+...|++++|.+.+++.++..+. |...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hHH
Confidence 344444444445555554444444333221 1111 11111222334556666666666666655322 3323321 111
Q ss_pred HH----hcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCC
Q 003295 577 LC----SLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGN 652 (833)
Q Consensus 577 ~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 652 (833)
+. ..+..+.+.+.+.... ...+........+...+...|++++|...+++..+..+. +...+..+...+...|+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCC
Confidence 11 1233344444433311 111112233334455666677777777777777766543 45566666777777777
Q ss_pred hHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhHH-H--HHHHHHHhcCChhH
Q 003295 653 TTAAFRLSNDMKSRGI-LPTS--VTYSSLIHGLCNIGLIEDAKCLFDEMRKEGL-LPNVACY-T--ALIGGYCKLGQMDE 725 (833)
Q Consensus 653 ~~~A~~~~~~m~~~~~-~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~-~--~li~~~~~~g~~~~ 725 (833)
+++|...+++...... .++. ..|..+...+...|++++|..+++++..... .+..... + .++.-+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 7777777776665421 1222 2344566667777777777777777654321 1111111 1 22233333444333
Q ss_pred HHHH--HHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------C-CHHHHHHHHHHHhcCCCH
Q 003295 726 AESV--LQEMASINI--HPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGIS-------P-DSITYNVFMDGHCKGGNV 793 (833)
Q Consensus 726 A~~~--~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-------p-~~~~~~~l~~~~~~~g~~ 793 (833)
+.+. +........ ............++...|+.++|...++.+...... . ..........++...|++
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 3332 111111000 111122224566677777888888887777552211 0 122333344455677888
Q ss_pred HHHHHHHHHHHHC
Q 003295 794 EEAFKVCDRMLSE 806 (833)
Q Consensus 794 ~~A~~~~~~m~~~ 806 (833)
++|.+.+.+.+..
T Consensus 324 ~~A~~~L~~al~~ 336 (355)
T cd05804 324 ATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777653
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.97 E-value=2.1e-06 Score=91.93 Aligned_cols=92 Identities=12% Similarity=0.081 Sum_probs=45.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCCh--hHHHHHHHHHH
Q 003295 327 ILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGM-SPNS--VTFNSLIHGFC 403 (833)
Q Consensus 327 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~~~~~li~~~~ 403 (833)
.+...+...|++++|...+++..+... .+...+..+...|...|++++|...+++...... .|+. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 333445555555555555555555421 1234445555555555555555555555544321 1111 12334455555
Q ss_pred hcCChhHHHHHHHHHH
Q 003295 404 KSGQMDNAENALEEML 419 (833)
Q Consensus 404 ~~g~~~~A~~~l~~~~ 419 (833)
..|++++|.++++++.
T Consensus 198 ~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 198 ERGDYEAALAIYDTHI 213 (355)
T ss_pred HCCCHHHHHHHHHHHh
Confidence 5555555555555553
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=1.7e-06 Score=82.35 Aligned_cols=193 Identities=12% Similarity=0.142 Sum_probs=115.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH-HHHHHHhc
Q 003295 222 NFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNN-IIHGLCRN 300 (833)
Q Consensus 222 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~~ 300 (833)
.+.+..+.+..++++|++++..-.+..+.+....+.+..+|....++.+|.+.++++-.. .|...-|.. -...+.+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 444555566667777777776666445556777777777777777777777777777654 344444432 12344566
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHH--HHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHH
Q 003295 301 GRLYEAFHLKEKMVLREVEPSLITYSILIN--GLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALK 378 (833)
Q Consensus 301 g~~~~A~~~~~~m~~~~~~p~~~t~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~ 378 (833)
+.+.+|+.+...|... |+...-..-+. .....+++..+..+.++....| +..+.+.......+.|++++|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 7777777777666542 22222111111 2234667777777777665322 33444444445567777888877
Q ss_pred HHHHHHhC-CCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 003295 379 IRDDMVSK-GMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLS 424 (833)
Q Consensus 379 ~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~ 424 (833)
-|+...+- |.+ ....||..+ +..+.|+++.|.+...+++++|+.
T Consensus 166 kFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 166 KFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 77777663 444 445666444 344557777777777777777654
No 98
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.94 E-value=0.00015 Score=79.90 Aligned_cols=137 Identities=14% Similarity=0.164 Sum_probs=86.8
Q ss_pred HHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHH
Q 003295 228 LVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAF 307 (833)
Q Consensus 228 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 307 (833)
....+++..|.....+..+..|...++-..-.-.+.+.|+.++|..+++.....+.. |..|...+-..|.+.|+.++|.
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 345577888888887777433333333322233356788888888888777666544 7778888888888888888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 003295 308 HLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYC 368 (833)
Q Consensus 308 ~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~ 368 (833)
.+|++.... .|+..-...+..+|.+.+.+.+-.+.--+|.+. +.-+.+.+=++++.+.
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLIL 155 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHH
Confidence 888888765 466666666777777777776644444444432 1223343334444443
No 99
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.92 E-value=0.00014 Score=75.71 Aligned_cols=428 Identities=12% Similarity=0.112 Sum_probs=246.8
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH
Q 003295 211 SKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTY 290 (833)
Q Consensus 211 ~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 290 (833)
+.++. |+.+|+.||.-+..+ .++++++.|+++..-++-....|..-|..-.+..+++...++|.+-+..- -+...|
T Consensus 14 e~nP~-di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW 89 (656)
T KOG1914|consen 14 EENPY-DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLW 89 (656)
T ss_pred hcCCc-cHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHH
Confidence 33444 788999999877655 89999999999987777778889999999999999999999999877653 356667
Q ss_pred HHHHHHHHh-cCChhHHH----HHHHHH-HhCCCCCCh-hhHHHHHHHH---------HhcCChhHHHHHHHHHHHCCCC
Q 003295 291 NNIIHGLCR-NGRLYEAF----HLKEKM-VLREVEPSL-ITYSILINGL---------IKLEKFDDANFVLKEMSVRGFV 354 (833)
Q Consensus 291 ~~li~~~~~-~g~~~~A~----~~~~~m-~~~~~~p~~-~t~~~li~~~---------~~~g~~~~A~~~~~~m~~~g~~ 354 (833)
...++--.+ .|+...+. +.|+-. .+.|+.+-. ..|+..+..+ ....+++..+++++++...-+.
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~ 169 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH 169 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc
Confidence 666653322 23333322 223322 233433322 3355555432 3344566677777777653211
Q ss_pred CChhhHH------HHHHHH-------HHcCChHHHHHHHHHHHh--CCCCCChhH---------------HHHHHHHHHh
Q 003295 355 PNYVVYN------TLIDGY-------CKKGNISEALKIRDDMVS--KGMSPNSVT---------------FNSLIHGFCK 404 (833)
Q Consensus 355 p~~~~y~------~li~~~-------~~~g~~~~A~~~~~~m~~--~g~~p~~~~---------------~~~li~~~~~ 404 (833)
.=...|+ .=|+.. -+...+..|.++++++.. +|+..+..+ |-.+|..--.
T Consensus 170 nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEks 249 (656)
T KOG1914|consen 170 NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKS 249 (656)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhc
Confidence 0011111 111100 122345556666665542 333222111 2222221111
Q ss_pred cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC------
Q 003295 405 SGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCIN-SRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGK------ 477 (833)
Q Consensus 405 ~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------ 477 (833)
++-.-+-...+..-. ..+|...+..+... .-+-++...+.+. -+.+...|+
T Consensus 250 NpL~t~~~~~~~~Rv-------~yayeQ~ll~l~~~peiWy~~s~yl~~~---------------s~l~~~~~d~~~a~~ 307 (656)
T KOG1914|consen 250 NPLRTLDGTMLTRRV-------MYAYEQCLLYLGYHPEIWYDYSMYLIEI---------------SDLLTEKGDVPDAKS 307 (656)
T ss_pred CCcccccccHHHHHH-------HHHHHHHHHHHhcCHHHHHHHHHHHHHh---------------hHHHHHhcccccchh
Confidence 110000000000000 00011111000000 0011111111111 111222222
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 003295 478 -QAEATELCFRLFEKGFTVNTVTSNALIHGMCEAG---NLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFK 553 (833)
Q Consensus 478 -~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 553 (833)
-+++..++++.++.-...+..+|..+.+.--..- +.+.....++++...-..--..+|..+++...+..-++.|..
T Consensus 308 ~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 308 LTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHH
Confidence 4567777777666544445556666554322222 366677777777665433344667888888888888999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 003295 554 LKEDMIKRGIQP-DNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKK 632 (833)
Q Consensus 554 ~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 632 (833)
+|.+..+.+..+ +++..++++.-+|. ++..-|.++|+.=.+. +..++.--...++.+...++-..|..+|+..+..+
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 999999988777 78888888888875 7788999999875543 23344445667888888999999999999999885
Q ss_pred CccC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003295 633 MELN--PVVYNTLIRAYCKIGNTTAAFRLSNDMKSR 666 (833)
Q Consensus 633 ~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 666 (833)
..++ ...|..+++--..-|+...+.++-+++...
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 4443 578999999999999999999988887654
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.89 E-value=1.9e-05 Score=96.13 Aligned_cols=303 Identities=15% Similarity=0.054 Sum_probs=127.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC------CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----HHHH
Q 003295 469 VSGLCKNGKQAEATELCFRLFEKGFT------VN--TVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDK----VTYN 536 (833)
Q Consensus 469 i~~~~~~g~~~~A~~~~~~~~~~g~~------~~--~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~----~~~~ 536 (833)
...+...|++++|...+....+.-.. +. ......+...+...|++++|...+++..+.-...+. ...+
T Consensus 416 a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 495 (903)
T PRK04841 416 AWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATS 495 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 33444556666666666555432100 01 111112223344556666666666655442111111 1233
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC--C-CHhh
Q 003295 537 TLILGCCKDGKPEEGFKLKEDMIKRGIQ-----PDNYTYNLLLHGLCSLGKMEEAIELWEECKRT----VFG--P-DIYT 604 (833)
Q Consensus 537 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~ 604 (833)
.+...+...|++++|...+++....... ....++..+...+...|++++|...+++.... +.. + ....
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 3444445566666666666555432110 01123333444555556666666665554331 110 0 1122
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHC----CCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-CCHHHH----
Q 003295 605 YGVMIDGFCKADKIEEGETLFNEMISK----KMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGIL-PTSVTY---- 675 (833)
Q Consensus 605 ~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~---- 675 (833)
+..+...+...|++++|...+.+.... +.......+..+...+...|+.++|.+.+++....... .....+
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 655 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANA 655 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHH
Confidence 233334444556666666555554432 10111222333444455556666665555554331000 000000
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC-HHHHH
Q 003295 676 -SSLIHGLCNIGLIEDAKCLFDEMRKEGLLPN---VACYTALIGGYCKLGQMDEAESVLQEMASI----NIHPN-KITYT 746 (833)
Q Consensus 676 -~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~ 746 (833)
...+..+...|+.+.|..++........... ...+..+..++...|+.++|...+++.... |...+ ..++.
T Consensus 656 ~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~ 735 (903)
T PRK04841 656 DKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLI 735 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 0011222335555555555544332110000 001223444455555566665555555431 21111 12344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 003295 747 IMIGGYCKLGDMKEAAKLLNVMAEK 771 (833)
Q Consensus 747 ~li~~~~~~g~~~~A~~~~~~m~~~ 771 (833)
.+..++.+.|+.++|...+.++.+.
T Consensus 736 ~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 736 LLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4445555556666666666665553
No 101
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=1.2e-05 Score=76.68 Aligned_cols=317 Identities=19% Similarity=0.129 Sum_probs=210.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHH-HHHHH
Q 003295 254 LFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSI-LINGL 332 (833)
Q Consensus 254 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-li~~~ 332 (833)
-+++.+.-+.+..++++|.+++..-.++... +......|...|....++..|-+.++++-.. .|...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 3667777888899999999999888876432 6777888889999999999999999998764 466555543 34667
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChhhHHHHHH--HHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhH
Q 003295 333 IKLEKFDDANFVLKEMSVRGFVPNYVVYNTLID--GYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDN 410 (833)
Q Consensus 333 ~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 410 (833)
.+.+.+.+|..+...|.+. |+...-..-+. .....+++..+..+.++....| +..+.+...-...+.|++++
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 7889999999999988753 23222222222 2345788888888888876532 44455555556678999999
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhh----HHHHHHHHHhcCCHHHHHHHHH
Q 003295 411 AENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGL----LTLLVSGLCKNGKQAEATELCF 486 (833)
Q Consensus 411 A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~ 486 (833)
|.+-|....+.+--.....|+. .-++.+.|+++.|++...+++.+|++..+.. .+-.++.-.- |+ ...+..
T Consensus 163 AvqkFqaAlqvsGyqpllAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsv-gN---t~~lh~ 237 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSV-GN---TLVLHQ 237 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcc-cc---hHHHHH
Confidence 9999999888654444555554 4456678889999999999998887643221 1111110000 00 000000
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCC
Q 003295 487 RLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRG-LILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQP 565 (833)
Q Consensus 487 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 565 (833)
.. =+..+|.-...+.+.|+++.|.+.+.+|.-+. -..|++|...+.-. -..+++.+..+-+.-++...+-
T Consensus 238 Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf- 308 (459)
T KOG4340|consen 238 SA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF- 308 (459)
T ss_pred HH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-
Confidence 00 12234545556778889999999998887543 33466766544322 1245666666667777766543
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003295 566 DNYTYNLLLHGLCSLGKMEEAIELWEEC 593 (833)
Q Consensus 566 ~~~~~~~li~~~~~~g~~~~A~~~~~~~ 593 (833)
...||..++-.||+..-++.|-+++.+-
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 4577888888888888888888877653
No 102
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.85 E-value=5.8e-05 Score=73.70 Aligned_cols=328 Identities=14% Similarity=0.093 Sum_probs=171.8
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHH---HHHHHHcCChHHHHHHHHHHHhCCCCCChhHH-
Q 003295 320 PSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTL---IDGYCKKGNISEALKIRDDMVSKGMSPNSVTF- 395 (833)
Q Consensus 320 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~- 395 (833)
.|+.-...+.+.+...|++.+|+..|....+- |+..|.++ ...|...|+-..|+.=+...++. +||-..-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~AR 109 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAAR 109 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHH
Confidence 34555566777777888888888888877764 33334443 44677777777777777777764 5664321
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 003295 396 NSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKN 475 (833)
Q Consensus 396 ~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 475 (833)
..-...+.+.|.+++|..-|+..++.... .. ....++.+.--.++- ......+..+...
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~~s--~~---~~~eaqskl~~~~e~----------------~~l~~ql~s~~~~ 168 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHEPS--NG---LVLEAQSKLALIQEH----------------WVLVQQLKSASGS 168 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcCCC--cc---hhHHHHHHHHhHHHH----------------HHHHHHHHHHhcC
Confidence 11223566777777777777777664321 10 011111111000000 0112223334445
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 003295 476 GKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLK 555 (833)
Q Consensus 476 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 555 (833)
|+...|++....+++. .+-|...|..-..+|...|+...|+.-++...+..-. +..++..+-..+...|+.+.++...
T Consensus 169 GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~i 246 (504)
T KOG0624|consen 169 GDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEI 246 (504)
T ss_pred CchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHH
Confidence 5555555555555554 2234455555555555555555555555444443222 4444444444555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc
Q 003295 556 EDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMEL 635 (833)
Q Consensus 556 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 635 (833)
++-++. .||...+... |- .+.+..+.++.|.+ ....++|.++.+..+...+..+..
T Consensus 247 RECLKl--dpdHK~Cf~~---YK---klkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~ 302 (504)
T KOG0624|consen 247 RECLKL--DPDHKLCFPF---YK---KLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEE 302 (504)
T ss_pred HHHHcc--CcchhhHHHH---HH---HHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCcc
Confidence 555443 3332211111 11 11111222222211 223566666666666666664443
Q ss_pred CHHHHH---HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003295 636 NPVVYN---TLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKE 701 (833)
Q Consensus 636 ~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 701 (833)
..+.|+ .+-.++...|++.+|++...+.++.. +.|..++.--..+|.-...++.|+.-|+.+.+.
T Consensus 303 ~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 303 TMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred cceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 333333 34455566677777777777776652 234666666677777777777777777777764
No 103
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.80 E-value=3.7e-05 Score=75.06 Aligned_cols=325 Identities=13% Similarity=0.088 Sum_probs=187.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh-HHHHHHHHHh
Q 003295 221 CNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVT-YNNIIHGLCR 299 (833)
Q Consensus 221 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~ 299 (833)
-.-+...+...|++..|+.-|...+.|.|.+-.++..-...|...|+-..|+.=|.+.++. .||-.. --.-...+.+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 3445667778899999999999998887777777777888899999999999999998875 566332 1223345678
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHH
Q 003295 300 NGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKI 379 (833)
Q Consensus 300 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~ 379 (833)
.|++++|..-|+..+... |+..+ ...++.+.- ..+++.. ....+..+.-.|+...|++.
T Consensus 119 ~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~-------~~~e~~~---------l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLA-------LIQEHWV---------LVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred cccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHH-------hHHHHHH---------HHHHHHHHhcCCchhhHHHH
Confidence 899999999998888763 33221 111111111 1111111 11222334457788888888
Q ss_pred HHHHHhCCCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 003295 380 RDDMVSKGMSP-NSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNL 458 (833)
Q Consensus 380 ~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 458 (833)
...+++- .| |...|..-..+|...|++..|+.-++...+. -..+..++..+-..+...|+.+.++...++.++.++
T Consensus 178 i~~llEi--~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL-s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldp 254 (504)
T KOG0624|consen 178 ITHLLEI--QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKL-SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDP 254 (504)
T ss_pred HHHHHhc--CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCc
Confidence 8888774 33 6666777777888888888888777776654 234566666677777777777777777777665443
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH---
Q 003295 459 RPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTY--- 535 (833)
Q Consensus 459 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~--- 535 (833)
. ...... .|-+.. +....++.+ ....+.+++.++.+-.+...+..+....+.+
T Consensus 255 d--HK~Cf~---~YKklk---Kv~K~les~----------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~ 310 (504)
T KOG0624|consen 255 D--HKLCFP---FYKKLK---KVVKSLESA----------------EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGF 310 (504)
T ss_pred c--hhhHHH---HHHHHH---HHHHHHHHH----------------HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeee
Confidence 2 111000 011111 111111111 1122344555555555555554333222222
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 003295 536 NTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRT 596 (833)
Q Consensus 536 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 596 (833)
..+-.++...+++.+|++...+.++... .|+.++.--..+|.-...+++|+.-|+...+.
T Consensus 311 r~~c~C~~~d~~~~eAiqqC~evL~~d~-~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 311 RVLCTCYREDEQFGEAIQQCKEVLDIDP-DDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred heeeecccccCCHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 2233344445556666666655555421 13555555555555555666666666555543
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.78 E-value=2.5e-05 Score=95.03 Aligned_cols=371 Identities=12% Similarity=0.080 Sum_probs=216.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC
Q 003295 364 IDGYCKKGNISEALKIRDDMVSKGMSPNS-VTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSR 442 (833)
Q Consensus 364 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~ 442 (833)
...+...|++.+|......... .+.. .............|+++.+..+++.+.......+..........+...|+
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d---~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~ 424 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGD---AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHR 424 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCC---HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCC
Confidence 4445566776666654433221 1000 01111222344567777766666654221111223333444455566788
Q ss_pred hhHHHHHHHHHHHCCCC------CC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhc
Q 003295 443 FNSALHFTKEMLLRNLR------PG--DGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVN----TVTSNALIHGMCEA 510 (833)
Q Consensus 443 ~~~A~~~~~~~~~~~~~------~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~ 510 (833)
+++|...+......-.. +. ......+...+...|++++|...+++..+.-...+ ....+.+...+...
T Consensus 425 ~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 504 (903)
T PRK04841 425 YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK 504 (903)
T ss_pred HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc
Confidence 88888877766543111 11 11122233455678889999888888776322212 13456666777888
Q ss_pred CCHHHHHHHHHHHhhC----CCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHH
Q 003295 511 GNLKEAGKLLMEMLQR----GLI-LDKVTYNTLILGCCKDGKPEEGFKLKEDMIKR----GIQ--P-DNYTYNLLLHGLC 578 (833)
Q Consensus 511 g~~~~A~~~l~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~ 578 (833)
|++++|...+.+.... |.. ....++..+...+...|++++|...+++.... +.. + ....+..+...+.
T Consensus 505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 584 (903)
T PRK04841 505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW 584 (903)
T ss_pred CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 9999998888887643 111 11234455666777889999998888876653 211 1 2233445566677
Q ss_pred hcCCHHHHHHHHHHHhhCC--CCC--CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc-CHHHH-----HHHHHHHH
Q 003295 579 SLGKMEEAIELWEECKRTV--FGP--DIYTYGVMIDGFCKADKIEEGETLFNEMISKKMEL-NPVVY-----NTLIRAYC 648 (833)
Q Consensus 579 ~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~-----~~li~~~~ 648 (833)
..|++++|...+.+..... ..+ ....+..+...+...|+.++|...+.+........ ....+ ...+..+.
T Consensus 585 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (903)
T PRK04841 585 EWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQ 664 (903)
T ss_pred HhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHH
Confidence 7799999998888765421 111 13344445667778899999988888875421110 11111 11224445
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-hhHHHHHHHHHHhc
Q 003295 649 KIGNTTAAFRLSNDMKSRGILPTS---VTYSSLIHGLCNIGLIEDAKCLFDEMRKE----GLLPN-VACYTALIGGYCKL 720 (833)
Q Consensus 649 ~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~ 720 (833)
..|+.+.|.+.+............ ..+..+..++...|+.++|...+++.... |...+ ..++..+..++.+.
T Consensus 665 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~ 744 (903)
T PRK04841 665 MTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQ 744 (903)
T ss_pred HCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHc
Confidence 678888888887765542211111 11345666778889999999999887653 32222 24566677788899
Q ss_pred CChhHHHHHHHHHHhCC
Q 003295 721 GQMDEAESVLQEMASIN 737 (833)
Q Consensus 721 g~~~~A~~~~~~m~~~g 737 (833)
|+.++|...+.+..+..
T Consensus 745 G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 745 GRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999988753
No 105
>PF12854 PPR_1: PPR repeat
Probab=98.77 E-value=7.1e-09 Score=66.28 Aligned_cols=32 Identities=53% Similarity=1.009 Sum_probs=16.3
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 003295 282 GIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKM 313 (833)
Q Consensus 282 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 313 (833)
|+.||++|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=7.1e-07 Score=93.14 Aligned_cols=256 Identities=15% Similarity=0.093 Sum_probs=162.8
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHH
Q 003295 540 LGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIE 619 (833)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 619 (833)
.-+.+.|++.+|.-.|+..++..+. +...|..|.......++-..|+..+.+..+.. +-+....-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 3456778888888888888877544 66777777777777777777777777777653 234556666667777777777
Q ss_pred HHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-
Q 003295 620 EGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEM- 698 (833)
Q Consensus 620 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 698 (833)
+|++.+++.+...++ |..+..+ ...++.+.- +-.++... +....++|-++
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a-~~~~~~~~~----------~s~~~~~~-------------l~~i~~~fLeaa 421 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSA-GENEDFENT----------KSFLDSSH-------------LAHIQELFLEAA 421 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhcccc-CccccccCC----------cCCCCHHH-------------HHHHHHHHHHHH
Confidence 777777777665432 0000000 000000000 00112211 22333444444
Q ss_pred HHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-
Q 003295 699 RKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDS- 777 (833)
Q Consensus 699 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~- 777 (833)
...+..+|..++..|.-.|.-.|++++|...|+.++... +-|...||-|+..+....+.++|+..|+++++ +.|+-
T Consensus 422 ~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yV 498 (579)
T KOG1125|consen 422 RQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYV 498 (579)
T ss_pred HhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCee
Confidence 344545677778888888888888888888888888753 44567888888888888888888888888888 67764
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHC---CCC------CCHHHHHHHHHhhccCCCCc
Q 003295 778 ITYNVFMDGHCKGGNVEEAFKVCDRMLSE---GLS------LDEITYTTLIDGWQSSTITN 829 (833)
Q Consensus 778 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---g~~------p~~~~~~~l~~~~~~~~~~~ 829 (833)
.+...|+-+|...|.++||.+.|-+.+.. +-. ++...|.+|--++.-.+..|
T Consensus 499 R~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 499 RVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred eeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 46667777888888888888888776542 111 12356776666665544444
No 107
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.73 E-value=4.8e-07 Score=91.55 Aligned_cols=149 Identities=18% Similarity=0.186 Sum_probs=67.9
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 003295 611 GFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCN----IG 686 (833)
Q Consensus 611 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g 686 (833)
.+...|++++|++++++. .+.......+..|.+.++++.|.+.++.|.+.+ .|.. ...+..++.. .+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~-l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSI-LTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHH-HHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHH-HHHHHHHHHHHHhCch
Confidence 344455555555544332 134444445555555555555555555555432 2222 2222222211 12
Q ss_pred CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 003295 687 LIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDM-KEAAKLL 765 (833)
Q Consensus 687 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~ 765 (833)
.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++++..+.+ +-|..+...++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 355555555555443 23455555555555555555555555555555432 23344444455555555554 3444455
Q ss_pred HHHHH
Q 003295 766 NVMAE 770 (833)
Q Consensus 766 ~~m~~ 770 (833)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 55444
No 108
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.70 E-value=4.8e-07 Score=91.56 Aligned_cols=248 Identities=13% Similarity=0.109 Sum_probs=161.6
Q ss_pred HHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHH
Q 003295 542 CCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEG 621 (833)
Q Consensus 542 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 621 (833)
+.-.|++..++.-.+ ........+......+.+++...|+++.++. ++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334577777665554 2222222233445566777778887765443 333322 55555555554444443455566
Q ss_pred HHHHHHHHHCCCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 622 ETLFNEMISKKME-LNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRK 700 (833)
Q Consensus 622 ~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 700 (833)
+.-+++....... .+..........+...|++++|+++++.. .+.......+..+.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6555554433322 23333334445667789999999988642 3667777888999999999999999999987
Q ss_pred CCCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003295 701 EGLLPNVACYTALIGGYCK----LGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPD 776 (833)
Q Consensus 701 ~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 776 (833)
. ..|.. ...+..++.. .+++.+|..+|+++.+. .++++.+.+.+..++...|++++|.++++++.+.+ +-|
T Consensus 160 ~--~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~ 234 (290)
T PF04733_consen 160 I--DEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PND 234 (290)
T ss_dssp C--SCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCH
T ss_pred c--CCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCC
Confidence 4 34543 3334444432 34699999999998875 57899999999999999999999999999988753 336
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHH
Q 003295 777 SITYNVFMDGHCKGGNV-EEAFKVCDRMLS 805 (833)
Q Consensus 777 ~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~ 805 (833)
..+...++-.....|+. +.+.+++.++..
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 67888888888888988 667788888876
No 109
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.68 E-value=0.00083 Score=70.08 Aligned_cols=429 Identities=13% Similarity=0.123 Sum_probs=215.4
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 003295 245 CRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPN-VVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLI 323 (833)
Q Consensus 245 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 323 (833)
++..|-|..+|+.||+-+..+ .++++++.++++... .|+ ...|..-|.+..+..+++....+|.+-..+- -+..
T Consensus 13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlD 87 (656)
T KOG1914|consen 13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLD 87 (656)
T ss_pred HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHh
Confidence 345678899999999877666 899999999998863 444 5678888888888999999999999888763 3566
Q ss_pred hHHHHHHHHHh-cCChhHHH----HHHHHH-HHCCCCCC-hhhHHHHHHHH---------HHcCChHHHHHHHHHHHhCC
Q 003295 324 TYSILINGLIK-LEKFDDAN----FVLKEM-SVRGFVPN-YVVYNTLIDGY---------CKKGNISEALKIRDDMVSKG 387 (833)
Q Consensus 324 t~~~li~~~~~-~g~~~~A~----~~~~~m-~~~g~~p~-~~~y~~li~~~---------~~~g~~~~A~~~~~~m~~~g 387 (833)
.|...|.--.+ .|+...+. +.|+-. .+.|+.+- -..|+.-+..+ ..+.+++...+++.++...-
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 66666653322 23333322 223322 34454332 22344444322 23345556666777766532
Q ss_pred CCCCh-hHHHHHHHH-----------H--HhcCChhHHHHHHHHHHH--CCCCCCcccHHHHHHHHHhcCChhHH--HHH
Q 003295 388 MSPNS-VTFNSLIHG-----------F--CKSGQMDNAENALEEMLS--RGLSINQGAYTSVIKWLCINSRFNSA--LHF 449 (833)
Q Consensus 388 ~~p~~-~~~~~li~~-----------~--~~~g~~~~A~~~l~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A--~~~ 449 (833)
+. +. ..|+-.... + -+...+-.|.++++++.. +|+..+..+ .-..|--++. .++
T Consensus 168 m~-nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~ 239 (656)
T KOG1914|consen 168 MH-NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVEL 239 (656)
T ss_pred cc-cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHH
Confidence 22 21 123211100 0 011123334444444322 222211111 0000001111 111
Q ss_pred HHHHHH----CCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHH-----HHHHHHHHhcCCH-----
Q 003295 450 TKEMLL----RNLR-PGDGLLTLLVSGLCKNGKQAEATELCFRLF-EKGFTVNTVTS-----NALIHGMCEAGNL----- 513 (833)
Q Consensus 450 ~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~g~~~~~~~~-----~~li~~~~~~g~~----- 513 (833)
+...++ .+.. .+..... ....-.+++.+ --+..|++... ....+.+...|+.
T Consensus 240 W~n~I~wEksNpL~t~~~~~~~------------~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~ 307 (656)
T KOG1914|consen 240 WKNWIKWEKSNPLRTLDGTMLT------------RRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKS 307 (656)
T ss_pred HHHHHHHHhcCCcccccccHHH------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchh
Confidence 111111 1111 0000000 00001111111 11122221100 0011122333332
Q ss_pred --HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003295 514 --KEAGKLLMEMLQRGLILDKVTYNTLILGCCKD---GKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIE 588 (833)
Q Consensus 514 --~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 588 (833)
+++..+++...+.-..-+...|..+.+---.. .+.+.....+++++..-..--..+|..+++...+..-++.|..
T Consensus 308 ~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 308 LTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHH
Confidence 34444444433321111222333222211111 1244455555555544222223456667777777777778888
Q ss_pred HHHHHhhCCCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003295 589 LWEECKRTVFGP-DIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRG 667 (833)
Q Consensus 589 ~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 667 (833)
+|.++.+.+..+ ++.++++++.-|| .++.+-|.++|+--++.-.. ++.--...++-+...++-..|..+|++....+
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d-~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD-SPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 888877766665 6667777777776 56677777777766555322 44555566777777777777888888877765
Q ss_pred CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 668 ILPT--SVTYSSLIHGLCNIGLIEDAKCLFDEMRK 700 (833)
Q Consensus 668 ~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 700 (833)
+.++ ...|..++.--+.-|++..+.++-+++..
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5443 35677777777777887777777766654
No 110
>PF12854 PPR_1: PPR repeat
Probab=98.68 E-value=2.3e-08 Score=63.92 Aligned_cols=34 Identities=44% Similarity=0.973 Sum_probs=26.6
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003295 246 RGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKME 279 (833)
Q Consensus 246 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 279 (833)
+|++||.+|||++|++||+.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3677888888888888888888888888888773
No 111
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.68 E-value=0.0014 Score=72.60 Aligned_cols=532 Identities=14% Similarity=0.089 Sum_probs=266.1
Q ss_pred hhhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhH
Q 003295 193 QFKNLGFGYAIDVFSIFSSKGIFPSLKTCNFLLNS--LVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIED 270 (833)
Q Consensus 193 ~~~~~~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 270 (833)
....+.+..|++-...+.++- |+. .|...+.+ +.|.|+.++|...++....-...|..|...+-.+|-..|+.++
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence 345677889998887765543 222 23333443 4589999999988877762223388899999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CChhH---------
Q 003295 271 AIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKL-EKFDD--------- 340 (833)
Q Consensus 271 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~-g~~~~--------- 340 (833)
|..++++..+. .|+......+-.+|.|.+.+.+-.+.--++-+. .+.+.+.+=++++.+... ...++
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999999875 577777777888899988887655544444442 334444444444444332 22222
Q ss_pred HHHHHHHHHHCC-CCCChhhHHHHHHHHHHcCChHHHHHHHHH-HHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 003295 341 ANFVLKEMSVRG-FVPNYVVYNTLIDGYCKKGNISEALKIRDD-MVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEM 418 (833)
Q Consensus 341 A~~~~~~m~~~g-~~p~~~~y~~li~~~~~~g~~~~A~~~~~~-m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~ 418 (833)
|...++.+.+.+ -.-+..-.-.-...+-..|++++|.+++.. ..+.-..-+...-+--+..+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 344455555443 111111111112234467888888888833 333322224444455667777888888888888888
Q ss_pred HHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003295 419 LSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRN-LRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNT 497 (833)
Q Consensus 419 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 497 (833)
...|... |...++.+ .++++.. ..|-... ....+..+...+...+.......-..
T Consensus 253 l~k~~Dd----y~~~~~sv-------------~klLe~~~~~~a~~~-------~s~~~~l~~~~ek~~~~i~~~~Rgp~ 308 (932)
T KOG2053|consen 253 LEKGNDD----YKIYTDSV-------------FKLLELLNKEPAEAA-------HSLSKSLDECIEKAQKNIGSKSRGPY 308 (932)
T ss_pred HHhCCcc----hHHHHHHH-------------HHHHHhcccccchhh-------hhhhhhHHHHHHHHHHhhcccccCcH
Confidence 8776321 33333321 1111111 1111100 11112222222222222222111000
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-------------CHHHHHHHHHHHHhcCC-hhhHHHHHHHHHHCCC
Q 003295 498 VTSNALIHGMCEAGNLKEAGKLLMEMLQRGLIL-------------DKVTYNTLILGCCKDGK-PEEGFKLKEDMIKRGI 563 (833)
Q Consensus 498 ~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~-------------~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~ 563 (833)
.++--+..-+-.-|+.+++...|-+- -|-.| +..-...++..+....+ ...+.+.+.+
T Consensus 309 LA~lel~kr~~~~gd~ee~~~~y~~k--fg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~------ 380 (932)
T KOG2053|consen 309 LARLELDKRYKLIGDSEEMLSYYFKK--FGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQ------ 380 (932)
T ss_pred HHHHHHHHHhcccCChHHHHHHHHHH--hCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHH------
Confidence 11111111122334444443332211 11110 11111222222222111 1111111111
Q ss_pred CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHh---hC------CCCCC---------HhhHHHHHHHHHccCCHH---
Q 003295 564 QPDNYTYNLLLHGLCS---LGKMEEAIELWEECK---RT------VFGPD---------IYTYGVMIDGFCKADKIE--- 619 (833)
Q Consensus 564 ~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~---~~------~~~~~---------~~~~~~li~~~~~~g~~~--- 619 (833)
.+.+..+...+- .=..+.-..++.+.. +. +..|. .-+.+.|++.+.+.++..
T Consensus 381 ----h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~ 456 (932)
T KOG2053|consen 381 ----HLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLF 456 (932)
T ss_pred ----HHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 011111111110 001111111111111 11 11222 223466778888887754
Q ss_pred HHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003295 620 EGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMR 699 (833)
Q Consensus 620 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 699 (833)
+|+-+++........ |..+--.+|..|+-.|-+..|.++|+.+.-+.+..|...|.. ..-+...|++..+...+....
T Consensus 457 eaI~LLE~glt~s~h-nf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~~t~g~~~~~s~~~~~~l 534 (932)
T KOG2053|consen 457 EAITLLENGLTKSPH-NFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRAETSGRSSFASNTFNEHL 534 (932)
T ss_pred HHHHHHHHHhhcCCc-cHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHHHhcccchhHHHHHHHHH
Confidence 566666666655433 566666788899999999999999999887777777665533 344556677777777766655
Q ss_pred HCCCCCChhHHHHHHHHHHhcCChhHHHHHHH---HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003295 700 KEGLLPNVACYTALIGGYCKLGQMDEAESVLQ---EMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMA 769 (833)
Q Consensus 700 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~---~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 769 (833)
+-=-..-..+-..+..+| +.|.+.+..++.. ++......--..+=+..++..+..++.++-...+..|.
T Consensus 535 kfy~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 535 KFYDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHHhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 420001112222233333 5666665554432 33221111112233556666677777777766666654
No 112
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.66 E-value=4.2e-06 Score=87.55 Aligned_cols=219 Identities=16% Similarity=0.099 Sum_probs=138.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhh
Q 003295 471 GLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEE 550 (833)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 550 (833)
-+.+.|++.+|.-.|+..++..+. +...|.-|.......++-..|+..+.+..+..+. |......|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 345677788888888887776433 7788988988888899999999999999988776 78888888888888998899
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-----------HHHHhcCCHHHHHHHHHHHh-hCCCCCCHhhHHHHHHHHHccCCH
Q 003295 551 GFKLKEDMIKRGIQPDNYTYNLLL-----------HGLCSLGKMEEAIELWEECK-RTVFGPDIYTYGVMIDGFCKADKI 618 (833)
Q Consensus 551 A~~~~~~m~~~g~~p~~~~~~~li-----------~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~ 618 (833)
|++.++..+...++ |..+. ..+..........++|-++. ..+..+|+.++..|.-.|.-.|++
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999988775322 00000 01111111223333333332 333335555666666666666666
Q ss_pred HHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 003295 619 EEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTS-VTYSSLIHGLCNIGLIEDAKCLFDE 697 (833)
Q Consensus 619 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~ 697 (833)
++|+..|+..+...+. |...||.|...++...+.++|+..|.+.++. +|.- .+...|.-.|...|.+++|.+.|-+
T Consensus 447 draiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 6666666666665544 5666666666666666666666666666654 3322 2222344455566666666665555
Q ss_pred HH
Q 003295 698 MR 699 (833)
Q Consensus 698 m~ 699 (833)
++
T Consensus 524 AL 525 (579)
T KOG1125|consen 524 AL 525 (579)
T ss_pred HH
Confidence 44
No 113
>PLN02789 farnesyltranstransferase
Probab=98.61 E-value=2.3e-05 Score=80.49 Aligned_cols=203 Identities=13% Similarity=0.094 Sum_probs=105.4
Q ss_pred cCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh--hHHH
Q 003295 231 ANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRG-RIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRL--YEAF 307 (833)
Q Consensus 231 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~--~~A~ 307 (833)
.++.++|+..+.+++.-.|.+..+|+....++.+.| ++++++..++++.+.... +..+|+...-.+.+.|+. ++++
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHH
Confidence 455666666666666444445555655555555555 456666666666655332 333455443334444442 4556
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc---CCh----HHHHHHH
Q 003295 308 HLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKK---GNI----SEALKIR 380 (833)
Q Consensus 308 ~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~---g~~----~~A~~~~ 380 (833)
.+++++.+.. +.|..+|+...-.+.+.|+++++++.++++++.++. |..+|+-....+.+. |.. +++.+..
T Consensus 129 ~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 129 EFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 6666666543 345566666666666666666666666666665433 444454444333332 222 3455555
Q ss_pred HHHHhCCCCCChhHHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 003295 381 DDMVSKGMSPNSVTFNSLIHGFCKS----GQMDNAENALEEMLSRGLSINQGAYTSVIKWLC 438 (833)
Q Consensus 381 ~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~ 438 (833)
.+++...+. |...|+.+...+... ++..+|.+.+.+....+ +.+..+...+++.|+
T Consensus 207 ~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~ 266 (320)
T PLN02789 207 IDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLC 266 (320)
T ss_pred HHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHH
Confidence 555554332 556666666666552 23344555555544432 113333444444444
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.56 E-value=1.3e-05 Score=86.13 Aligned_cols=217 Identities=18% Similarity=0.174 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHH
Q 003295 568 YTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAY 647 (833)
Q Consensus 568 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 647 (833)
..-..+...+.+.|-...|..+|++.. .|...|.+|+..|+..+|..+..+.+++ +|++..|..+.+..
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 334556778888899999999998654 4566788899999999999998888874 67889998888888
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHH
Q 003295 648 CKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAE 727 (833)
Q Consensus 648 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 727 (833)
....-+++|.++.+..... .-..+.......++++++.+.|+.-.+.. +--..+|-.+..+..+.++++.|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 7777788888888765432 11122222334688999999998877742 335678888888888899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 728 SVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 728 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
+.|....... +.+...||.+..+|.+.|+..+|...++++.+.+ .-+-..|...+....+.|.+++|++.+.++..
T Consensus 540 ~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 540 KAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 9999988753 4456789999999999999999999999998865 44556777777788899999999999999877
No 115
>PLN02789 farnesyltranstransferase
Probab=98.56 E-value=9.4e-05 Score=76.05 Aligned_cols=203 Identities=11% Similarity=0.073 Sum_probs=101.6
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCC--HHHHH
Q 003295 546 GKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLG-KMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADK--IEEGE 622 (833)
Q Consensus 546 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~ 622 (833)
++.++|+.+..++++.... +..+|+.....+...| ++++++..++++.+.. +.+..+|+.....+.+.|+ .+++.
T Consensus 51 e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHH
Confidence 4455555555555554222 2333433333444444 3455555555555442 2233334333333333333 24556
Q ss_pred HHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CC----HHHHHHHH
Q 003295 623 TLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNI---GL----IEDAKCLF 695 (833)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~ 695 (833)
.+++++++..++ |..+|+....++.+.|+++++++.++++++.+.. +...|+.....+.+. |. .+++.++.
T Consensus 129 ~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 129 EFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 666666665544 5666666666666666666666666666665432 444444444433332 11 23455555
Q ss_pred HHHHHCCCCCChhHHHHHHHHHHhc----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003295 696 DEMRKEGLLPNVACYTALIGGYCKL----GQMDEAESVLQEMASINIHPNKITYTIMIGGYCK 754 (833)
Q Consensus 696 ~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 754 (833)
.+++... +-|...|+.+...+... ++..+|.+.+.+....+ +.+......|++.|+.
T Consensus 207 ~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 207 IDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 5555542 33556666666666552 33455666666655432 3345556666666654
No 116
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.55 E-value=2e-05 Score=90.15 Aligned_cols=215 Identities=13% Similarity=0.105 Sum_probs=154.2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCC--CC---CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003295 204 DVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGV--SP---DVFLFSTAINAFCKRGRIEDAIGLFTKM 278 (833)
Q Consensus 204 ~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m 278 (833)
+-|++.....+. +...|-.-|.-....++.+.|++++++++... .. -...|.++++..-.-|.-+...++|+++
T Consensus 1445 eDferlvrssPN-SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1445 EDFERLVRSSPN-SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHhcCCC-cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 335555444433 56677777777888888888888888887322 11 2345777777666677777888888888
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--
Q 003295 279 EELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPN-- 356 (833)
Q Consensus 279 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-- 356 (833)
.+. .-...+|..|...|.+.+.+++|.++++.|.++- ......|...+..+.++++-++|..++.+..+. .|-
T Consensus 1524 cqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~e 1598 (1710)
T KOG1070|consen 1524 CQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQE 1598 (1710)
T ss_pred HHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhh
Confidence 774 2123467788888888888888888888888752 356677888888888888888888888888765 333
Q ss_pred -hhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 003295 357 -YVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSI 425 (833)
Q Consensus 357 -~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~ 425 (833)
+......+..-.+.|+.+.+..+|+..+..-++ -...|+..|+.-.+.|+.+.++.+|+++...++.+
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 333444555666788888888888888776433 45678888888888888888888888888877654
No 117
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.48 E-value=7.8e-05 Score=85.63 Aligned_cols=220 Identities=16% Similarity=0.134 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCC---CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHH
Q 003295 568 YTYNLLLHGLCSLGKMEEAIELWEECKRTV-FGP---DIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTL 643 (833)
Q Consensus 568 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 643 (833)
..|-..|......++.++|+++.++++..- +.. -.-.|.++++....-|.-+...++|+++.+.. -....|..|
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L 1536 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKL 1536 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHH
Confidence 344444444444555555555555444321 100 11233344444444444444555555554431 123345555
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhHHHHHHHHHHhc
Q 003295 644 IRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPN---VACYTALIGGYCKL 720 (833)
Q Consensus 644 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~ 720 (833)
...|.+.+..++|.++++.|.++ ..-....|...+..+.+..+-+.|..++.++++. -|. .....-.+..-.+.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhc
Confidence 55555555555555555555554 1234445555555555555555555555555553 232 22223333444455
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcCCCH
Q 003295 721 GQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDS--ITYNVFMDGHCKGGNV 793 (833)
Q Consensus 721 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~ 793 (833)
|+.+.+..+|+..... .|--...|+.+++.=.++|+.+.+..+|++++..++.|.. ..|...+..=-..|+-
T Consensus 1614 GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred CCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 6666666666555543 1333455666666666666666666666666665555532 3444444443444443
No 118
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.46 E-value=1.8e-05 Score=79.06 Aligned_cols=185 Identities=15% Similarity=0.073 Sum_probs=115.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh--hhHH
Q 003295 217 SLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDV---FLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNV--VTYN 291 (833)
Q Consensus 217 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~ 291 (833)
....+..+...+.+.|++++|...|+++....+.+. .++..+..++.+.|++++|...++++.+..+.... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 455666677777778888888888887774333332 45666777888888888888888888765332111 1344
Q ss_pred HHHHHHHhc--------CChhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHH
Q 003295 292 NIIHGLCRN--------GRLYEAFHLKEKMVLREVEPSL-ITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNT 362 (833)
Q Consensus 292 ~li~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~ 362 (833)
.+...+... |++++|.+.|+++... .|+. ..+..+.... . ... .. ......
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~~~-------~~-------~~~~~~ 171 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---LRN-------RL-------AGKELY 171 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---HHH-------HH-------HHHHHH
Confidence 445555443 6778888888888765 2332 2222221110 0 000 00 011224
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003295 363 LIDGYCKKGNISEALKIRDDMVSKGM-SP-NSVTFNSLIHGFCKSGQMDNAENALEEMLSR 421 (833)
Q Consensus 363 li~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~ 421 (833)
+...|.+.|++++|...+++..+... .| ....+..+...+.+.|++++|...++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56678888888888888888876532 12 3457778888888888888888888877654
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.46 E-value=2.7e-05 Score=74.38 Aligned_cols=118 Identities=9% Similarity=0.095 Sum_probs=59.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 003295 685 IGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGY-CKLGD--MKEA 761 (833)
Q Consensus 685 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~--~~~A 761 (833)
.++.+++...+++.++.. +.|...|..+...|...|++++|...+++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 334445555555544432 3344555555555555555555555555555542 33444555555542 34444 3555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 762 AKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 762 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
.++++++++.+ +-+..++..++..+.+.|++++|+..|+++++
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555532 11444555555555555555555555555554
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.44 E-value=0.008 Score=69.29 Aligned_cols=238 Identities=14% Similarity=0.117 Sum_probs=145.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 003295 217 SLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHG 296 (833)
Q Consensus 217 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 296 (833)
+...|..|+..+...+++++|..+.+....-.|.....|..+.-.+.+.++..++..+ .+.. .
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~---------------~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID---------------S 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh---------------h
Confidence 4667888888888889999999988866643444444444444467777776666655 3332 2
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHH
Q 003295 297 LCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEA 376 (833)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A 376 (833)
.....++.-...+...|... .-+...+..+..+|-+.|+.++|..+++++.+... -|..+.|.+...|... ++++|
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHH
Confidence 22222332222223333332 23444667788888888888888888888887753 2677788888888888 88888
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003295 377 LKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLR 456 (833)
Q Consensus 377 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 456 (833)
.+++.+.+.. |...+++.++.+++.++..... .+...+..+. +.+...
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~-~d~d~f~~i~----------------~ki~~~ 216 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNS-DDFDFFLRIE----------------RKVLGH 216 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCc-ccchHHHHHH----------------HHHHhh
Confidence 8888776653 5666677788888887776522 1222222222 222111
Q ss_pred -CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003295 457 -NLRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMC 508 (833)
Q Consensus 457 -~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 508 (833)
+..--..++..+-..|.+..+++++..+++.+++.... |.....-++.+|.
T Consensus 217 ~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 217 REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 11112234445556666777777777777777776443 5556666666665
No 121
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.40 E-value=2.9e-05 Score=77.48 Aligned_cols=188 Identities=12% Similarity=0.008 Sum_probs=131.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh--hhH
Q 003295 250 PDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIA-PN-VVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSL--ITY 325 (833)
Q Consensus 250 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~ 325 (833)
.....+..++..+.+.|++++|...|+++....+. |. ..++..+...+.+.|++++|...++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 44667788888999999999999999999876322 11 246777888999999999999999999876321111 145
Q ss_pred HHHHHHHHhc--------CChhHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHH
Q 003295 326 SILINGLIKL--------EKFDDANFVLKEMSVRGFVPNY-VVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFN 396 (833)
Q Consensus 326 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~-~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 396 (833)
..+...+... |++++|.+.|+++.+. .|+. ..+..+.... .... ... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~----~~~~------~~~--------~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD----YLRN------RLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH----HHHH------HHH--------HHHH
Confidence 5555555544 6788899999988876 3442 2222221110 0000 000 1122
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC--CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003295 397 SLIHGFCKSGQMDNAENALEEMLSRGL--SINQGAYTSVIKWLCINSRFNSALHFTKEMLLRN 457 (833)
Q Consensus 397 ~li~~~~~~g~~~~A~~~l~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 457 (833)
.+...+.+.|++++|...++++.+... +.....+..++..+.+.|++++|...++.+..+.
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 566779999999999999999987632 2235688999999999999999999998887664
No 122
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.40 E-value=7.1e-05 Score=80.66 Aligned_cols=216 Identities=18% Similarity=0.110 Sum_probs=145.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 003295 464 LLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCC 543 (833)
Q Consensus 464 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~ 543 (833)
.-..+...+...|-..+|..+++++. .|...+.+|+..|+..+|..+..+-.++ +||...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33456667777777788887777653 3566777788888888888777777663 457777777776665
Q ss_pred hcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHH
Q 003295 544 KDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGET 623 (833)
Q Consensus 544 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 623 (833)
...-+++|.++.+..-.. .-..+.....+.++++++.+.|+.-.+.. +.-..+|-.+..+..+.++++.|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 555566676666654322 22222333444677888888777766543 2345566666666777788888888
Q ss_pred HHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 624 LFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRK 700 (833)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 700 (833)
.|.......+. +...||.+-.+|.+.|+..+|+..+++..+.+ .-+...|...+....+.|.+++|++.+.++..
T Consensus 541 aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 541 AFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 88777766444 56778888888888888888888888877766 33445555555566777888888887777754
No 123
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.39 E-value=1.1e-05 Score=72.81 Aligned_cols=91 Identities=8% Similarity=-0.119 Sum_probs=45.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCC
Q 003295 713 LIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGN 792 (833)
Q Consensus 713 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 792 (833)
+...+...|++++|...|+...... +.+...|..++.++...|++++|+..|+++.+.+ +.+..++..++.++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3444445555555555555555432 3344455555555555555555555555555421 1234455555555555555
Q ss_pred HHHHHHHHHHHHH
Q 003295 793 VEEAFKVCDRMLS 805 (833)
Q Consensus 793 ~~~A~~~~~~m~~ 805 (833)
.++|+..|+..++
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.38 E-value=6.3e-05 Score=71.48 Aligned_cols=160 Identities=16% Similarity=0.119 Sum_probs=120.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 003295 222 NFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNG 301 (833)
Q Consensus 222 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 301 (833)
..+-..+...|+-+.+..+........+.|.......+....+.|++.+|...|.+..... .+|-.+|+.+.-+|-+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 5556667777888888877777765566677777778888888888888888888887654 357788888888888888
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 003295 302 RLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRD 381 (833)
Q Consensus 302 ~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~ 381 (833)
++++|..-|.+..+.. .-+...+|.|.-.+.-.|+.+.|..++......+.. |...-..|.-.....|++++|..+..
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 8888888888887752 335566777777778888888888888888766433 55666667777778888888887765
Q ss_pred HHH
Q 003295 382 DMV 384 (833)
Q Consensus 382 ~m~ 384 (833)
.-.
T Consensus 227 ~e~ 229 (257)
T COG5010 227 QEL 229 (257)
T ss_pred ccc
Confidence 544
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.38 E-value=0.0002 Score=81.96 Aligned_cols=240 Identities=11% Similarity=0.051 Sum_probs=175.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHH
Q 003295 248 VSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNV-VTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYS 326 (833)
Q Consensus 248 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 326 (833)
.+.+...+..|+..+...|++++|.++.+...+. .|+. ..|-.++..+.+.++.+++..+ .+..
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~----------- 91 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLID----------- 91 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhh-----------
Confidence 4556788999999999999999999999987775 4553 3444444467777887776665 3332
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcC
Q 003295 327 ILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSG 406 (833)
Q Consensus 327 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 406 (833)
.+....++.-..-+...|.+. .-+...+.+|..+|-+.|+.++|.++++++++..+. |..+.|.+...|...
T Consensus 92 ----~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 92 ----SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE- 163 (906)
T ss_pred ----hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-
Confidence 222333343333333344443 224568889999999999999999999999998744 888999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 003295 407 QMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCF 486 (833)
Q Consensus 407 ~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 486 (833)
++++|.+++.++... +...+++..+.+++.++....+. +++.-..+.+
T Consensus 164 dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-----------------d~d~f~~i~~ 211 (906)
T PRK14720 164 DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-----------------DFDFFLRIER 211 (906)
T ss_pred hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-----------------cchHHHHHHH
Confidence 999999999988764 67777899999999988876543 2223333333
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 003295 487 RLFEK-GFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCC 543 (833)
Q Consensus 487 ~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~ 543 (833)
.+... |..--+.++-.+-..|-+.++++++..+|+.+.+.... |.....-++.+|.
T Consensus 212 ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 212 KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 43333 33345566777788899999999999999999998766 7777888888876
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.36 E-value=8.9e-05 Score=70.48 Aligned_cols=125 Identities=13% Similarity=0.069 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 003295 637 PVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGG 716 (833)
Q Consensus 637 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 716 (833)
....+..+....+.|++.+|...+.+..... ++|..+|+.+.-+|.+.|+.++|..-|.+..+.- .-+...++.+...
T Consensus 100 ~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms 177 (257)
T COG5010 100 RELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMS 177 (257)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHH
Confidence 3333334444444444444444444444432 3344444444444444444444444444444421 1123334444444
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003295 717 YCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKL 764 (833)
Q Consensus 717 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 764 (833)
|.-.|+.+.|..++......+ .-|...-..+.......|++++|.++
T Consensus 178 ~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 178 LLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 444444444444444444332 22333334444444444444444443
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.35 E-value=0.00017 Score=81.89 Aligned_cols=132 Identities=14% Similarity=0.105 Sum_probs=61.3
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003295 601 DIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIH 680 (833)
Q Consensus 601 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 680 (833)
+...+..|.....+.|+.++|+.+++...+..+. +......++..+.+.+++++|+...++..... +-+......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 3444444445555555555555555555444332 33444444444555555555555555544442 123333344444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003295 681 GLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMAS 735 (833)
Q Consensus 681 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 735 (833)
++.+.|++++|..+|+++...+ +-+..++..+...+-+.|+.++|...|++..+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444555555555555554421 12234444444444455555555555555443
No 128
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.30 E-value=3.1e-05 Score=74.03 Aligned_cols=113 Identities=9% Similarity=0.065 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHH-HhcCC--hhHHHHHHHH
Q 003295 201 YAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAF-CKRGR--IEDAIGLFTK 277 (833)
Q Consensus 201 ~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A~~~~~~ 277 (833)
+++..++..++.++. +...|..|...|...|++++|...|++..+-.+.+...+..+..++ ...|+ .++|.+++++
T Consensus 57 ~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~ 135 (198)
T PRK10370 57 AQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDK 135 (198)
T ss_pred HHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 333444443333332 4444555555555555555555555544433334444444444432 33343 2455555555
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003295 278 MEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVL 315 (833)
Q Consensus 278 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (833)
..+.++. +..++..+...+.+.|++++|+..++++.+
T Consensus 136 al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 136 ALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5444322 344444444444455555555555555444
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.28 E-value=6.3e-05 Score=67.89 Aligned_cols=92 Identities=11% Similarity=-0.063 Sum_probs=49.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003295 677 SLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLG 756 (833)
Q Consensus 677 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 756 (833)
.+...+...|++++|...|+.+.... +.+...|..+..++.+.|++++|...|++..+.+ +.+...+..++.++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 34444555555555555555555532 2244555555555555555555555555555543 344555555555555555
Q ss_pred CHHHHHHHHHHHHH
Q 003295 757 DMKEAAKLLNVMAE 770 (833)
Q Consensus 757 ~~~~A~~~~~~m~~ 770 (833)
++++|+..+++.++
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555555
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.27 E-value=0.00026 Score=73.21 Aligned_cols=200 Identities=18% Similarity=0.152 Sum_probs=132.4
Q ss_pred CChhHHHHHHHHhh---cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHH
Q 003295 232 NEVQKGIEVFETMC---RGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFH 308 (833)
Q Consensus 232 g~~~~A~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 308 (833)
.++.++...-+++. ....|+...+...+.+......-..+..++.+-.+. .-...-|..-+. +...|.+++|+.
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~-~~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRALQ-TYLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHHH-HHHhcccchHHH
Confidence 35566666666666 345667777777777666555544444444444331 112233444444 346788888888
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003295 309 LKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPN-YVVYNTLIDGYCKKGNISEALKIRDDMVSKG 387 (833)
Q Consensus 309 ~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g 387 (833)
.++.+... .+.|++.+......+.+.++.++|.+.++.+... .|+ ......+..+|.+.|++.+|..+++......
T Consensus 328 ~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~ 404 (484)
T COG4783 328 LLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND 404 (484)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence 88887765 2344555556667788888888888888888876 555 5566667778888888888888888877664
Q ss_pred CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003295 388 MSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLR 456 (833)
Q Consensus 388 ~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 456 (833)
.. |...|..|..+|...|+..+|.....+ .+...|+++.|+.++....+.
T Consensus 405 p~-dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 405 PE-DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred CC-CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence 33 777888888888888888877765554 344566677776666665544
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.26 E-value=0.00028 Score=80.16 Aligned_cols=161 Identities=11% Similarity=0.114 Sum_probs=108.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 003295 636 NPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIG 715 (833)
Q Consensus 636 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 715 (833)
++..+..|.....+.|++++|..+++...+.. +-+......+...+.+.+++++|...+++..... +-+......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 57777777777778888888888888777752 2244455666777777888888888888777753 334456666777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHH
Q 003295 716 GYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEE 795 (833)
Q Consensus 716 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 795 (833)
++.+.|++++|..+|+++...+ +.+..++..+..++.+.|+.++|...|+++.+. ..|....|+.++ ++...
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------~~~~~ 234 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------VDLNA 234 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------HHHHH
Confidence 7777888888888888877632 444677777777788888888888888887764 344455555443 23333
Q ss_pred HHHHHHHHHHC
Q 003295 796 AFKVCDRMLSE 806 (833)
Q Consensus 796 A~~~~~~m~~~ 806 (833)
-..+++++.-.
T Consensus 235 ~~~~~~~~~~~ 245 (694)
T PRK15179 235 DLAALRRLGVE 245 (694)
T ss_pred HHHHHHHcCcc
Confidence 44455555443
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.24 E-value=3.4e-05 Score=69.29 Aligned_cols=96 Identities=21% Similarity=0.145 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003295 708 ACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGH 787 (833)
Q Consensus 708 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 787 (833)
.....+...+.+.|++++|.+.++++.+.+ +.+...|..+...+...|++++|...+++..+.+ +.+..++..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334445555566666666666666665543 4455566666666666666666666666665532 23455566666666
Q ss_pred hcCCCHHHHHHHHHHHHH
Q 003295 788 CKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 788 ~~~g~~~~A~~~~~~m~~ 805 (833)
...|++++|...+++.++
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 96 LALGEPESALKALDLAIE 113 (135)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666666665
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.0005 Score=65.38 Aligned_cols=105 Identities=18% Similarity=0.164 Sum_probs=44.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 003295 683 CNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCK----LGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDM 758 (833)
Q Consensus 683 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 758 (833)
.+..+.+-|.+.+++|.+- .+..|.+-|..++.+ .+++.+|.-+|++|.++ .+|+..+.+....++...|++
T Consensus 148 lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCH
Confidence 3444444444444444431 233333333333332 22344444444444443 244444444444444444455
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCC
Q 003295 759 KEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGN 792 (833)
Q Consensus 759 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 792 (833)
++|..++++++.+. ..++.+...++-.-...|+
T Consensus 224 eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 224 EEAESLLEEALDKD-AKDPETLANLIVLALHLGK 256 (299)
T ss_pred HHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCC
Confidence 55554444444432 2233344333333333343
No 134
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.00051 Score=65.31 Aligned_cols=139 Identities=18% Similarity=0.120 Sum_probs=69.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----
Q 003295 504 IHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCS---- 579 (833)
Q Consensus 504 i~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---- 579 (833)
+..|++.|++++|.+.+.... +......=+..+.+..+.+-|.+.+++|.+.. +..|.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 345566666666666655421 22222222334445555666666666665532 44455545444433
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCCh
Q 003295 580 LGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNT 653 (833)
Q Consensus 580 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 653 (833)
.+++.+|.-+|++|.++ .+|+..+.+....++...|++++|..++++.+.+... ++.+...+|-.-...|..
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKD 257 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCC
Confidence 24455566666665543 3455555555555555556666666666655555443 444444444333333433
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.17 E-value=0.00063 Score=70.48 Aligned_cols=110 Identities=16% Similarity=0.173 Sum_probs=50.5
Q ss_pred ccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 003295 614 KADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPT-SVTYSSLIHGLCNIGLIEDAK 692 (833)
Q Consensus 614 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 692 (833)
..|++++|+..++.++...+. |+..+....+.+.+.++..+|.+.++++... .|+ ......+..++.+.|+..+|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHH
Confidence 344555555555554444332 4444444444445555555555555554443 222 233333444444555555555
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHH
Q 003295 693 CLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAE 727 (833)
Q Consensus 693 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 727 (833)
.++++..... +-|+..|..|..+|...|+..+|.
T Consensus 395 ~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 395 RILNRYLFND-PEDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHH
Confidence 5544444431 334444555555555555444443
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.001 Score=62.78 Aligned_cols=188 Identities=15% Similarity=0.148 Sum_probs=113.1
Q ss_pred hcCCHHHHHHHHHHHhh---CC-CCCCHh-hHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCCh
Q 003295 579 SLGKMEEAIELWEECKR---TV-FGPDIY-TYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNT 653 (833)
Q Consensus 579 ~~g~~~~A~~~~~~~~~---~~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 653 (833)
...+.++..+++.++.. .| ..++.. .|..++-+..-.|+.+.|...++.+...-+. +..+-..-.-.+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhch
Confidence 34667777777777764 34 334433 2344444455567777777777776655322 222222222234455777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 003295 654 TAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEM 733 (833)
Q Consensus 654 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 733 (833)
++|.++++.+.+.+ +.|.+++.-=+...-..|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 77777777777665 445666665555555666666777666666665 4557777777777777777777777777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q 003295 734 ASINIHPNKITYTIMIGGYCKLG---DMKEAAKLLNVMAE 770 (833)
Q Consensus 734 ~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~ 770 (833)
.=.. |-++..+..+...+...| +.+-|.+++.+.++
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 6532 334555556666655544 34556777777766
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.15 E-value=8.3e-05 Score=66.72 Aligned_cols=116 Identities=17% Similarity=0.123 Sum_probs=82.8
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003295 659 LSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINI 738 (833)
Q Consensus 659 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 738 (833)
.+++..... +.+......+...+...|++++|...++.+...+ +.+...+..+...+.+.|++++|...+++..+.+
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 344444442 2234445666677778888888888888887753 4466777778888888888888888888887754
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003295 739 HPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSIT 779 (833)
Q Consensus 739 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 779 (833)
+.+...+..+...+...|++++|...+++.++. .|+...
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 120 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPE 120 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccch
Confidence 556777777888888888888888888888873 455443
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=0.0028 Score=59.96 Aligned_cols=189 Identities=13% Similarity=0.160 Sum_probs=146.0
Q ss_pred hcCChhhHHHHHHHHHHC---C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCH
Q 003295 544 KDGKPEEGFKLKEDMIKR---G-IQPDNYT-YNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKI 618 (833)
Q Consensus 544 ~~g~~~~A~~~~~~m~~~---g-~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 618 (833)
...+.++..+++.+++.. | ..++.++ |..++-+....|+.+.|...++++...- +.+..+-..-...+-..|.+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 356789999999888753 4 5566654 4456667778899999999999988763 32333322223345568999
Q ss_pred HHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003295 619 EEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEM 698 (833)
Q Consensus 619 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 698 (833)
++|+++++.+++..+. |.+++-.-+-..-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999998755 7888888888888889999999999988886 5669999999999999999999999999999
Q ss_pred HHCCCCC-ChhHHHHHHHHHHhcC---ChhHHHHHHHHHHhCC
Q 003295 699 RKEGLLP-NVACYTALIGGYCKLG---QMDEAESVLQEMASIN 737 (833)
Q Consensus 699 ~~~g~~p-~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g 737 (833)
+-. .| +...+..+.+.+.-.| +.+-|.+++.+..+..
T Consensus 181 ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 974 45 5555566666655444 6788999999998753
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.99 E-value=1e-05 Score=52.68 Aligned_cols=31 Identities=48% Similarity=0.937 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 003295 290 YNNIIHGLCRNGRLYEAFHLKEKMVLREVEP 320 (833)
Q Consensus 290 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 320 (833)
||++|.+|++.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 3333333333333333333333333333333
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.96 E-value=1.2e-05 Score=52.30 Aligned_cols=35 Identities=46% Similarity=0.885 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 003295 253 FLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNV 287 (833)
Q Consensus 253 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 287 (833)
.+||++|.+|++.|++++|.++|.+|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36888888899999999999999888888888873
No 141
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.94 E-value=0.036 Score=57.17 Aligned_cols=443 Identities=13% Similarity=0.125 Sum_probs=235.8
Q ss_pred HhcCChhHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHH--HHhc
Q 003295 333 IKLEKFDDANFVLKEMSVRGFV-PN----YVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHG--FCKS 405 (833)
Q Consensus 333 ~~~g~~~~A~~~~~~m~~~g~~-p~----~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~ 405 (833)
-+++++.+|..+|.+..+..-. |- .+.-+-++++|.. .+++.....+.+..+. .| ...|-.|..+ +.+.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHh
Confidence 4677888888888887654211 10 2233455666653 3455555555555443 12 2334444443 3467
Q ss_pred CChhHHHHHHHHHHHC--CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 003295 406 GQMDNAENALEEMLSR--GLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATE 483 (833)
Q Consensus 406 g~~~~A~~~l~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 483 (833)
|++++|.+.+..-.+. +-.+. ..+.-+. +++ ++-..-...++++.+.|++.+++.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~--~Ld~ni~------------~l~---------~df~l~~i~a~sLIe~g~f~EgR~ 149 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESP--WLDTNIQ------------QLF---------SDFFLDEIEAHSLIETGRFSEGRA 149 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccc--hhhhhHH------------HHh---------hHHHHHHHHHHHHHhcCCcchHHH
Confidence 7777777777665543 11110 0000000 000 111122445666777777777777
Q ss_pred HHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---------------HHHHHHHHHHHhhC------CCCCCHHHHHHH
Q 003295 484 LCFRLFEK----GFTVNTVTSNALIHGMCEAGN---------------LKEAGKLLMEMLQR------GLILDKVTYNTL 538 (833)
Q Consensus 484 ~~~~~~~~----g~~~~~~~~~~li~~~~~~g~---------------~~~A~~~l~~m~~~------g~~~~~~~~~~l 538 (833)
+++++.+. ...-+..+||.++-.+.+.=- ++.+.-..++|... .+.|.......+
T Consensus 150 iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~i 229 (549)
T PF07079_consen 150 ILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTI 229 (549)
T ss_pred HHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHH
Confidence 77776654 333567777765544443211 11222222222221 233333334444
Q ss_pred HHHHHhc--CChhhHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----CCHhhHHHHHHH
Q 003295 539 ILGCCKD--GKPEEGFKLKEDMIKRGIQPDNY-TYNLLLHGLCSLGKMEEAIELWEECKRTVFG----PDIYTYGVMIDG 611 (833)
Q Consensus 539 i~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~ 611 (833)
+....-. .+..--.++++.....-+.|+.. ....+...+.+ +.+++..+.+.+....+. .=..++..++..
T Consensus 230 mqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~ 307 (549)
T PF07079_consen 230 MQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSF 307 (549)
T ss_pred HHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4333321 22333344444444444555532 23334444444 556666655554433211 124567778888
Q ss_pred HHccCCHHHHHHHHHHHHHCCCccCHHHH-------HHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCHH-HHHHH-
Q 003295 612 FCKADKIEEGETLFNEMISKKMELNPVVY-------NTLIRAYCK----IGNTTAAFRLSNDMKSRGILPTSV-TYSSL- 678 (833)
Q Consensus 612 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l- 678 (833)
..+.++..+|.+.+.-+....+ +...- ..+-+..|. .-+...-+.+|+......+ |.. ...-|
T Consensus 308 ~Vk~~~T~~a~q~l~lL~~ldp--~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~ 383 (549)
T PF07079_consen 308 KVKQVQTEEAKQYLALLKILDP--RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLV 383 (549)
T ss_pred HHHHHhHHHHHHHHHHHHhcCC--cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHH
Confidence 8888998888888776655432 22211 112222231 1223334556666555432 221 11112
Q ss_pred --HHHHHhcCC-HHHHHHHHHHHHHCCCCC-ChhHHHHHH----HHHHh---cCChhHHHHHHHHHHhCCCCCCH----H
Q 003295 679 --IHGLCNIGL-IEDAKCLFDEMRKEGLLP-NVACYTALI----GGYCK---LGQMDEAESVLQEMASINIHPNK----I 743 (833)
Q Consensus 679 --i~~~~~~g~-~~~A~~~~~~m~~~g~~p-~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~g~~p~~----~ 743 (833)
..-+-+.|. -++|.++++...+- .| |...-|.+. ..|.. ...+.+-..+-+-+.+.|++|-. .
T Consensus 384 ~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~e 461 (549)
T PF07079_consen 384 FGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEE 461 (549)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHH
Confidence 233445565 78899999998874 34 444333322 22222 22344445555555677877743 3
Q ss_pred HHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003295 744 TYTIMIGG--YCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSLDEITYTT 817 (833)
Q Consensus 744 ~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 817 (833)
.-|.|.++ +..+|++.++..+-.-+.+ +.|++.+|..++-++....++++|.+++.. ++|+...|+.
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ds 530 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDS 530 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHH
Confidence 45666655 6688999999888777777 889999999999999999999999999865 5667665554
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.93 E-value=0.00033 Score=73.46 Aligned_cols=122 Identities=18% Similarity=0.168 Sum_probs=73.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003295 676 SSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKL 755 (833)
Q Consensus 676 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 755 (833)
..|+..+...++++.|.++|+++.+.. |+. ...++..+...++-.+|.+++++..... +-+...+..-...|.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344445555666666666666666642 443 2335555555666666666666666532 33555555556666667
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003295 756 GDMKEAAKLLNVMAEKGISPD-SITYNVFMDGHCKGGNVEEAFKVCDRML 804 (833)
Q Consensus 756 g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 804 (833)
++++.|+++.+++.+ +.|+ ..+|..|+.+|...|++++|+-.++.+-
T Consensus 248 ~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777766 3453 3567777777777777777766666554
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.88 E-value=0.0004 Score=62.97 Aligned_cols=125 Identities=16% Similarity=0.198 Sum_probs=78.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHH
Q 003295 675 YSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPN---VACYTALIGGYCKLGQMDEAESVLQEMASINIHPN--KITYTIMI 749 (833)
Q Consensus 675 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li 749 (833)
|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+...+....|+ ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 44444444 3677777777777777652 222 12233345667777888888888888777541221 12445567
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003295 750 GGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRM 803 (833)
Q Consensus 750 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 803 (833)
..+...|++++|+..++..... ......+..+++.|.+.|++++|+..|+..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7777888888888887663322 224456677788888888888888877654
No 144
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.87 E-value=0.046 Score=56.40 Aligned_cols=88 Identities=16% Similarity=0.109 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHCCCCCC----hhHHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003295 689 EDAKCLFDEMRKEGLLPN----VACYTALIGG--YCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAA 762 (833)
Q Consensus 689 ~~A~~~~~~m~~~g~~p~----~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 762 (833)
.+-..+-+-..+.|++|- ...-|.|.++ +...|++.++.-.-.-+.+ +.|++.+|..++-++....++++|.
T Consensus 438 ~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~ 515 (549)
T PF07079_consen 438 PRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAW 515 (549)
T ss_pred HHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 333444444445566662 3344555443 3457788887766555555 5778888888888888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHH
Q 003295 763 KLLNVMAEKGISPDSITYNVF 783 (833)
Q Consensus 763 ~~~~~m~~~g~~p~~~~~~~l 783 (833)
++++. ++|+..+++.-
T Consensus 516 ~~l~~-----LP~n~~~~dsk 531 (549)
T PF07079_consen 516 EYLQK-----LPPNERMRDSK 531 (549)
T ss_pred HHHHh-----CCCchhhHHHH
Confidence 88776 56666655543
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.79 E-value=0.00078 Score=61.06 Aligned_cols=82 Identities=15% Similarity=0.150 Sum_probs=33.3
Q ss_pred cCChhHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChhH
Q 003295 231 ANEVQKGIEVFETMCRGVSPD---VFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPN--VVTYNNIIHGLCRNGRLYE 305 (833)
Q Consensus 231 ~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~ 305 (833)
.++...+...++.+....+.+ ......+...+...|++++|...|+........|+ ....-.+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 444444444444444222222 22222333444445555555555555444331111 1122223344444444444
Q ss_pred HHHHHHH
Q 003295 306 AFHLKEK 312 (833)
Q Consensus 306 A~~~~~~ 312 (833)
|+..++.
T Consensus 104 Al~~L~~ 110 (145)
T PF09976_consen 104 ALATLQQ 110 (145)
T ss_pred HHHHHHh
Confidence 4444433
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.78 E-value=3.8e-05 Score=49.50 Aligned_cols=28 Identities=32% Similarity=0.593 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 003295 255 FSTAINAFCKRGRIEDAIGLFTKMEELG 282 (833)
Q Consensus 255 ~~~li~~~~~~g~~~~A~~~~~~m~~~g 282 (833)
|+.++.+|++.|+++.|.++|++|.+.|
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQG 31 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3333333333333333333333333333
No 147
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.75 E-value=4.4e-05 Score=49.20 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 003295 288 VTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEP 320 (833)
Q Consensus 288 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 320 (833)
.+||.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 148
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.71 E-value=0.037 Score=59.79 Aligned_cols=214 Identities=14% Similarity=0.142 Sum_probs=116.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh--cCCCCCHHH--------HHHHHHHHHhcCC
Q 003295 198 GFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMC--RGVSPDVFL--------FSTAINAFCKRGR 267 (833)
Q Consensus 198 ~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~--------~~~li~~~~~~g~ 267 (833)
++++|.+.- +.+ |-+..|..|...-.+.-.++.|...|-+.. .|++--... -..=+.+| -|+
T Consensus 678 gledA~qfi----Edn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~ 749 (1189)
T KOG2041|consen 678 GLEDAIQFI----EDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGE 749 (1189)
T ss_pred chHHHHHHH----hcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcc
Confidence 355665542 333 667889888888777778888888886664 343211111 11112222 377
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 003295 268 IEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLR-EVEPSLITYSILINGLIKLEKFDDANFVLK 346 (833)
Q Consensus 268 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 346 (833)
+++|.+++-+|-++. ..|..+.+.|++-...++++.--.. .-+.-...|+.+...++....+++|.+.+.
T Consensus 750 feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887776642 2345556667776666655431110 001113456777777777777777777666
Q ss_pred HHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 003295 347 EMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSIN 426 (833)
Q Consensus 347 ~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~ 426 (833)
.-... ...+.+|.+..++++-+.+.+.+.+ |....-.+.+++...|.-++|.+.+-+-. .+
T Consensus 821 ~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~p-- 881 (1189)
T KOG2041|consen 821 YCGDT---------ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS---LP-- 881 (1189)
T ss_pred hccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc---Cc--
Confidence 54321 2345555555555555555444333 44455556666667776666665553321 11
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHH
Q 003295 427 QGAYTSVIKWLCINSRFNSALHFTK 451 (833)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~ 451 (833)
...+..+....++.+|.++-+
T Consensus 882 ----kaAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 882 ----KAAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHH
Confidence 233444555555555555443
No 149
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.71 E-value=0.0011 Score=69.49 Aligned_cols=123 Identities=17% Similarity=0.171 Sum_probs=88.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003295 606 GVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNI 685 (833)
Q Consensus 606 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 685 (833)
..|+..+...++++.|+.+|+++.+.. |+ ....++..+...++-.+|.+++++..+.. +.+...+..-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344555566778888888888887763 33 44456777777777788888888877653 34566666666777788
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003295 686 GLIEDAKCLFDEMRKEGLLPN-VACYTALIGGYCKLGQMDEAESVLQEMAS 735 (833)
Q Consensus 686 g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 735 (833)
++.+.|..+.+++.+. .|+ ..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8888888888888874 454 45788888888888888888887777653
No 150
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.011 Score=60.13 Aligned_cols=201 Identities=13% Similarity=0.010 Sum_probs=119.9
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHH--HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH---------
Q 003295 610 DGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIR--AYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSL--------- 678 (833)
Q Consensus 610 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l--------- 678 (833)
.++.-.|+.++|...-...++.... + .+..+++ ++.-.++.+.|...|++.+..+ |+...-..+
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~-n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDAT-N--AEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccc-h--hHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHH
Confidence 3455677888887777776665322 2 2223333 3345577788888888777653 443322111
Q ss_pred ----HHHHHhcCCHHHHHHHHHHHHHC---CCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 003295 679 ----IHGLCNIGLIEDAKCLFDEMRKE---GLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPN-KITYTIMIG 750 (833)
Q Consensus 679 ----i~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~ 750 (833)
.+-..+.|++.+|.+.+.+.+.. +..|+...|........+.|+.++|+.--++..+. .+. ...|..-..
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~ 329 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRAN 329 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHH
Confidence 22345788999999999998874 34456667777777888899999999888888763 221 123334445
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003295 751 GYCKLGDMKEAAKLLNVMAEKGISP-DSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSLDEITYTTL 818 (833)
Q Consensus 751 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 818 (833)
++...+++++|++-++++.+....+ +..++.....++-+..+ ..-.+++--.......|....|.-+
T Consensus 330 c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkR-kd~ykilGi~~~as~~eikkayrk~ 397 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKR-KDWYKILGISRNASDDEIKKAYRKL 397 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhh-hhHHHHhhhhhhcccchhhhHHHHH
Confidence 5667788999999999888743332 22344444444433222 2233333333333445556666543
No 151
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.68 E-value=0.0005 Score=66.85 Aligned_cols=99 Identities=23% Similarity=0.289 Sum_probs=74.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 003295 679 IHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPN-KITYTIMIGGYCKLGD 757 (833)
Q Consensus 679 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 757 (833)
.+-..+.+++++|...|.++++.. +-|.+.|..-..+|++.|.++.|++-.+..+.. .|+ ..+|..|..+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCc
Confidence 444567788888888888888842 335666777788888888888888888888774 344 4578888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHH
Q 003295 758 MKEAAKLLNVMAEKGISPDSITYNV 782 (833)
Q Consensus 758 ~~~A~~~~~~m~~~g~~p~~~~~~~ 782 (833)
+++|++.|++.++ +.|+-.+|..
T Consensus 165 ~~~A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 165 YEEAIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHHHHhhhc--cCCCcHHHHH
Confidence 8888888888888 6776665543
No 152
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.65 E-value=0.1 Score=53.79 Aligned_cols=458 Identities=14% Similarity=0.129 Sum_probs=227.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 003295 217 SLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHG 296 (833)
Q Consensus 217 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 296 (833)
|..+|-.|+.-|..+|.+++.++++++|.+.+|--..+|...+.+-....++.....+|.+-....+ +...|...+.-
T Consensus 41 nI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lYl~Y 118 (660)
T COG5107 41 NILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLYLEY 118 (660)
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHHHHH
Confidence 7899999999999999999999999999977777778899899988888999999999999887643 56667766664
Q ss_pred HHhcCChh--HH----HHHHHHHH-hCCCCCC-hhhHHHHHHHHH---------hcCChhHHHHHHHHHHHCCCCCChhh
Q 003295 297 LCRNGRLY--EA----FHLKEKMV-LREVEPS-LITYSILINGLI---------KLEKFDDANFVLKEMSVRGFVPNYVV 359 (833)
Q Consensus 297 ~~~~g~~~--~A----~~~~~~m~-~~~~~p~-~~t~~~li~~~~---------~~g~~~~A~~~~~~m~~~g~~p~~~~ 359 (833)
-.+.+..- ++ .+.|+-.. ..++.|- ...|+..+..+- .+.+++..++.+.+|...-
T Consensus 119 IRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP------- 191 (660)
T COG5107 119 IRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTP------- 191 (660)
T ss_pred HHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCc-------
Confidence 44433111 11 12222222 2234443 334554443322 1223344445555554321
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHH--CCCC----CCccc----
Q 003295 360 YNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLS--RGLS----INQGA---- 429 (833)
Q Consensus 360 y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~--~g~~----~~~~~---- 429 (833)
.|++++..+-|+..... .|..|-.-.+.- ..--+-.|...++++.. .|.. .+..+
T Consensus 192 ----------~~nleklW~dy~~fE~e---~N~~TarKfvge--~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~ 256 (660)
T COG5107 192 ----------MGNLEKLWKDYENFELE---LNKITARKFVGE--TSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKA 256 (660)
T ss_pred ----------cccHHHHHHHHHHHHHH---HHHHHHHHHhcc--cCHHHHHHHHHHHHHHHHhccccccCchhhhhhccc
Confidence 12222222222111110 011110000000 00001122223332221 1111 01111
Q ss_pred -------HHHHHHHHHhcC------ChhHHHHH-HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003295 430 -------YTSVIKWLCINS------RFNSALHF-TKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTV 495 (833)
Q Consensus 430 -------~~~li~~~~~~g------~~~~A~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~ 495 (833)
|...|++-..+| ....-+.. +++.+. -+.-....|...-..+...++-+.|+....+-. +.
T Consensus 257 ~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~-y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~----~~ 331 (660)
T COG5107 257 ARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILD-YFYYAEEVWFDYSEYLIGISDKQKALKTVERGI----EM 331 (660)
T ss_pred cccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcc----cC
Confidence 222222211110 00110000 000000 000111122222222334445555554443322 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh---cCChhhHHHHHHHHHHCCCCCCHHHHHH
Q 003295 496 NTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCK---DGKPEEGFKLKEDMIKRGIQPDNYTYNL 572 (833)
Q Consensus 496 ~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 572 (833)
.+...--+...|.-..+-++....|+...+. ...-...+..=.. .|+++...+++-.-+. -=..+|..
T Consensus 332 spsL~~~lse~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~----k~t~v~C~ 402 (660)
T COG5107 332 SPSLTMFLSEYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKRIN----KLTFVFCV 402 (660)
T ss_pred CCchheeHHHHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHHHh----hhhhHHHH
Confidence 2222222233333344444444444433221 0000000110000 1223222222221111 13456777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcC
Q 003295 573 LLHGLCSLGKMEEAIELWEECKRTV-FGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIG 651 (833)
Q Consensus 573 li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 651 (833)
.++...+...++.|..+|-++.+.+ ..+++..+++++..++ .|+...|..+|+--...-.. ++.--+..+.-+...+
T Consensus 403 ~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d-~~~y~~kyl~fLi~in 480 (660)
T COG5107 403 HLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPD-STLYKEKYLLFLIRIN 480 (660)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCC-chHHHHHHHHHHHHhC
Confidence 7777777788888888888888877 5577888888888776 57777888888776655322 3333455666777888
Q ss_pred ChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 003295 652 NTTAAFRLSNDMKSRGILPT--SVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGY 717 (833)
Q Consensus 652 ~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 717 (833)
+-+.|..+|+..+.+ +..+ ...|..+|+--..-|++..+..+=++|... -|...+-.....-|
T Consensus 481 de~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 481 DEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred cHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 888888888865543 1222 456888888888888888888887777763 45444433333334
No 153
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.65 E-value=6.1e-05 Score=47.29 Aligned_cols=26 Identities=35% Similarity=0.710 Sum_probs=10.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 003295 290 YNNIIHGLCRNGRLYEAFHLKEKMVL 315 (833)
Q Consensus 290 ~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (833)
||+++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 34444444444444444444444433
No 154
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.64 E-value=0.0027 Score=70.01 Aligned_cols=72 Identities=17% Similarity=0.064 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003295 741 NKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSLDEITYT 816 (833)
Q Consensus 741 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 816 (833)
+...|.++.-.....|++++|...++++++. .|+...|..++..+...|+.++|.+.+++... +.|...+|-
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~~ 490 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTLY 490 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchHH
Confidence 3445555555555556666666666666663 35555666666666666666666666666655 444433443
No 155
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.63 E-value=0.00085 Score=59.56 Aligned_cols=94 Identities=10% Similarity=-0.105 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 003295 710 YTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCK 789 (833)
Q Consensus 710 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 789 (833)
...+...+...|++++|.++|+.+...+ +-+..-|..|.-++...|++++|+..+..+.... +-|+..+..++.++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 3344455556677777777777666543 3345566666666777777777777777766643 2355666667777777
Q ss_pred CCCHHHHHHHHHHHHH
Q 003295 790 GGNVEEAFKVCDRMLS 805 (833)
Q Consensus 790 ~g~~~~A~~~~~~m~~ 805 (833)
.|+.+.|++.|+..+.
T Consensus 116 lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDNVCYAIKALKAVVR 131 (157)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777766665
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.63 E-value=0.00078 Score=55.56 Aligned_cols=93 Identities=26% Similarity=0.293 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 003295 711 TALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKG 790 (833)
Q Consensus 711 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 790 (833)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+..++..++..+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 344445555566666666666555432 2233455555555556666666666666655532 22334555555566666
Q ss_pred CCHHHHHHHHHHHHH
Q 003295 791 GNVEEAFKVCDRMLS 805 (833)
Q Consensus 791 g~~~~A~~~~~~m~~ 805 (833)
|++++|...+.+..+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 666666666655544
No 157
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.59 E-value=7.2e-05 Score=46.94 Aligned_cols=31 Identities=35% Similarity=0.807 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 003295 253 FLFSTAINAFCKRGRIEDAIGLFTKMEELGI 283 (833)
Q Consensus 253 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 283 (833)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
No 158
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.56 E-value=0.13 Score=52.93 Aligned_cols=130 Identities=18% Similarity=0.282 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 003295 672 SVTYSSLIHGLCNIGLIEDAKCLFDEMRKEG-LLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITY-TIMI 749 (833)
Q Consensus 672 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li 749 (833)
...|...++...+..-++.|..+|.++.+.| +.+++.++++++..++ .|+..-|.++|+--... -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456667777777777788888888888776 5667778888877665 57777788887765543 3444333 4455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 750 GGYCKLGDMKEAAKLLNVMAEKGISPD--SITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 750 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
.-+...++-+.|..+|+..+++ +..+ ...|..++.--..-|+...+..+=++|.+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 5666777778888888866654 3333 35677777777777887777777676666
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.56 E-value=0.0021 Score=55.95 Aligned_cols=92 Identities=15% Similarity=0.052 Sum_probs=42.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHH
Q 003295 711 TALIGGYCKLGQMDEAESVLQEMASINIHPN---KITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPD----SITYNVF 783 (833)
Q Consensus 711 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l 783 (833)
..++..+.+.|++++|.+.++++.+.. +.+ ...+..++.++.+.|++++|.+.++++.... |+ ...+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~ 82 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHHHH
Confidence 334444445555555555555554321 111 2234444555555555555555555554421 21 2334444
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH
Q 003295 784 MDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 784 ~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
+.++.+.|+.++|.+.++++++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHH
Confidence 5555555555555555555554
No 160
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.0092 Score=60.55 Aligned_cols=299 Identities=14% Similarity=0.011 Sum_probs=178.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003295 499 TSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLC 578 (833)
Q Consensus 499 ~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 578 (833)
........+.+..++.+|+..+...++..+. +..-|..-...+..-|++++|.--.+.-++.... ......-.-.++.
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHL 128 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhh
Confidence 3444455566666677777777777666554 4444554555555556666665555444433111 1222333333444
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCc-cCHHHHHHH-HHHHHHcCChHHH
Q 003295 579 SLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKME-LNPVVYNTL-IRAYCKIGNTTAA 656 (833)
Q Consensus 579 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l-i~~~~~~g~~~~A 656 (833)
..++..+|.+.++ +...| ....|+..++........ |.-.+|..+ ..++.-.|+.++|
T Consensus 129 a~~~~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a 188 (486)
T KOG0550|consen 129 ALSDLIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEA 188 (486)
T ss_pred hhHHHHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhH
Confidence 4444444444443 11111 122233333333332222 233344333 2355667899999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCChhH-------------HHHHHHHHHhcC
Q 003295 657 FRLSNDMKSRGILPTSVTYSSLIHG--LCNIGLIEDAKCLFDEMRKEGLLPNVAC-------------YTALIGGYCKLG 721 (833)
Q Consensus 657 ~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~-------------~~~li~~~~~~g 721 (833)
...--...+.. ..+ .+...+++ +--.++.+.|...|++.+.. .|+... +..-.+-..+.|
T Consensus 189 ~~ea~~ilkld-~~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G 263 (486)
T KOG0550|consen 189 QSEAIDILKLD-ATN--AEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNG 263 (486)
T ss_pred HHHHHHHHhcc-cch--hHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhcc
Confidence 88887777653 112 23333443 34567889999999998874 465432 222234456789
Q ss_pred ChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCCHHHHH
Q 003295 722 QMDEAESVLQEMASI---NIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDS-ITYNVFMDGHCKGGNVEEAF 797 (833)
Q Consensus 722 ~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~ 797 (833)
++.+|.+.+.+.+.. +..|+...|.....+..+.|+.++|+.--+++++ +.|.- ..|..-..++...++|++|.
T Consensus 264 ~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 264 NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999863 3455667788888889999999999999888877 44432 45555566777789999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHhhccCC
Q 003295 798 KVCDRMLSEGLSLD-EITYTTLIDGWQSST 826 (833)
Q Consensus 798 ~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~ 826 (833)
+.++...+..-.+. ..++.....+|..|.
T Consensus 342 ~d~~~a~q~~~s~e~r~~l~~A~~aLkkSk 371 (486)
T KOG0550|consen 342 EDYEKAMQLEKDCEIRRTLREAQLALKKSK 371 (486)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHhh
Confidence 99999988544443 556666666665443
No 161
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.54 E-value=0.0011 Score=54.64 Aligned_cols=91 Identities=23% Similarity=0.250 Sum_probs=43.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 003295 223 FLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGR 302 (833)
Q Consensus 223 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 302 (833)
.+...+...|++++|...|+++.+-.+.+...+..+..++...|++++|.+.|++..+.... +..++..+...+...|+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHHh
Confidence 34444445555555555555554323333344444555555555555555555555443221 22344444455555555
Q ss_pred hhHHHHHHHHHH
Q 003295 303 LYEAFHLKEKMV 314 (833)
Q Consensus 303 ~~~A~~~~~~m~ 314 (833)
+++|...+.+..
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.52 E-value=0.0018 Score=68.35 Aligned_cols=100 Identities=16% Similarity=0.097 Sum_probs=79.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003295 678 LIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGD 757 (833)
Q Consensus 678 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 757 (833)
-...+...|++++|+..|+++++.. +.+...|..+..+|.+.|++++|+..++++++.. +.+...|..++.+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 3456677889999999999998863 3466778888888889999999999999998864 4567788888889999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHH
Q 003295 758 MKEAAKLLNVMAEKGISPDSITYN 781 (833)
Q Consensus 758 ~~~A~~~~~~m~~~g~~p~~~~~~ 781 (833)
+++|+..|+++++ +.|+.....
T Consensus 86 ~~eA~~~~~~al~--l~P~~~~~~ 107 (356)
T PLN03088 86 YQTAKAALEKGAS--LAPGDSRFT 107 (356)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHH
Confidence 9999999999888 456543333
No 163
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.51 E-value=0.0025 Score=55.49 Aligned_cols=96 Identities=14% Similarity=0.050 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--ChhhHHHHHH
Q 003295 221 CNFLLNSLVKANEVQKGIEVFETMCRGVSPD---VFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAP--NVVTYNNIIH 295 (833)
Q Consensus 221 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~ 295 (833)
+..+...+.+.|++++|...|+.+....+.+ ...+..+..++.+.|++++|...|+++....... ...++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3344444555555555555555555221111 2344445555555555555555555555432111 1233444455
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 003295 296 GLCRNGRLYEAFHLKEKMVLR 316 (833)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m~~~ 316 (833)
.+.+.|+.++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555544
No 164
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.47 E-value=0.0017 Score=68.42 Aligned_cols=122 Identities=13% Similarity=0.157 Sum_probs=70.4
Q ss_pred ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHH
Q 003295 634 ELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSR--GILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYT 711 (833)
Q Consensus 634 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 711 (833)
..+......+++.+....+.+++..++.+.... ....-..|..++++.|.+.|..+++..++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 335555666666666656666666666665543 111112233466666666666666666666666666666666666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003295 712 ALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKL 755 (833)
Q Consensus 712 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 755 (833)
.|++.+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66666666666666666666666555455555555444444443
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.44 E-value=0.0029 Score=66.90 Aligned_cols=98 Identities=13% Similarity=0.065 Sum_probs=75.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC
Q 003295 643 LIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQ 722 (833)
Q Consensus 643 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 722 (833)
-...+...|++++|++.|++.++.. +.+...|..+..++.+.|++++|+..++++++.. +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 3455667788889999888888764 3466777788888888899999998888888853 3356778888888888899
Q ss_pred hhHHHHHHHHHHhCCCCCCHHH
Q 003295 723 MDEAESVLQEMASINIHPNKIT 744 (833)
Q Consensus 723 ~~~A~~~~~~m~~~g~~p~~~~ 744 (833)
+++|...|++..+. .|+...
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~ 105 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSR 105 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHH
Confidence 99999988888874 444433
No 166
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.41 E-value=0.0015 Score=53.67 Aligned_cols=78 Identities=22% Similarity=0.434 Sum_probs=52.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC-CCChhhHHHHHHHHHHcC--------ChHHHHHHHHHHHhCCCCCChhHHHH
Q 003295 327 ILINGLIKLEKFDDANFVLKEMSVRGF-VPNYVVYNTLIDGYCKKG--------NISEALKIRDDMVSKGMSPNSVTFNS 397 (833)
Q Consensus 327 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~y~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~ 397 (833)
..|.-+...+++.....+|+.+++.|+ .|++.+|+.++...++.. ++-+.+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344555555667777777777777776 667777777666665432 23356677788888888888888888
Q ss_pred HHHHHHh
Q 003295 398 LIHGFCK 404 (833)
Q Consensus 398 li~~~~~ 404 (833)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8777654
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.40 E-value=0.00025 Score=57.28 Aligned_cols=80 Identities=21% Similarity=0.307 Sum_probs=41.0
Q ss_pred cCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCCHHHHH
Q 003295 720 LGQMDEAESVLQEMASINI-HPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISP-DSITYNVFMDGHCKGGNVEEAF 797 (833)
Q Consensus 720 ~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 797 (833)
.|++++|+.+++++.+..- .++...+..++.+|.+.|++++|++++++ .+ ..| +......++.+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3556666666666665321 01333444456666666666666666655 22 112 2233344466666666666666
Q ss_pred HHHHH
Q 003295 798 KVCDR 802 (833)
Q Consensus 798 ~~~~~ 802 (833)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66554
No 168
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.39 E-value=0.002 Score=62.71 Aligned_cols=129 Identities=20% Similarity=0.196 Sum_probs=94.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHhcCC
Q 003295 644 IRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPN-VACYTALIGGYCKLGQ 722 (833)
Q Consensus 644 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 722 (833)
.+-+.+.+++.+|+..|.+.++.. +-|.+.|..-..+|++.|.++.|++-.+..+.- .|. ..+|..|..+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCc
Confidence 455678899999999999999874 447777888899999999999999999988884 454 4789999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHH---HHHHHHHHHHHcCCCCCH
Q 003295 723 MDEAESVLQEMASINIHPNKITYTI-MIGGYCKLGDMK---EAAKLLNVMAEKGISPDS 777 (833)
Q Consensus 723 ~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~ 777 (833)
+++|++.|++.++ +.|+..+|.. |-.+=.+.+..+ .+..-++-....|..||.
T Consensus 165 ~~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 165 YEEAIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred HHHHHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 9999999999998 5677666543 333333333332 333334433444544554
No 169
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.39 E-value=0.035 Score=56.73 Aligned_cols=63 Identities=16% Similarity=0.038 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-----CCHH-HHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 003295 499 TSNALIHGMCEAGNLKEAGKLLMEMLQRGLI-----LDKV-TYNTLILGCCKDGKPEEGFKLKEDMIKR 561 (833)
Q Consensus 499 ~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~-----~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 561 (833)
.+..++..+.+.|++++|.++|++....-.. .+.. .|-..+-++...|+...|.+.+++....
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3444555666666666666666665543221 1111 1122222344455666666666665543
No 170
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.39 E-value=0.0003 Score=56.76 Aligned_cols=81 Identities=26% Similarity=0.298 Sum_probs=52.9
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003295 685 IGLIEDAKCLFDEMRKEGL-LPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAK 763 (833)
Q Consensus 685 ~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 763 (833)
.|++++|+.+++++.+..- .++...+..+..+|.+.|++++|..++++ .+.+ +.+......++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 5677888888888877531 11344555577888888888888888877 3221 2233444556777888888888888
Q ss_pred HHHH
Q 003295 764 LLNV 767 (833)
Q Consensus 764 ~~~~ 767 (833)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8775
No 171
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.39 E-value=0.058 Score=53.44 Aligned_cols=182 Identities=13% Similarity=0.085 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 003295 218 LKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLF---STAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNII 294 (833)
Q Consensus 218 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 294 (833)
...+-.....+.+.|++++|...|+.+....|-+..+- ..++.++.+.|++++|...|++..+.-+....+.|....
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 33333445555678888888888888874333333333 456778888888888888888888765443344454444
Q ss_pred HHHHh--cC---------------C---hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 003295 295 HGLCR--NG---------------R---LYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFV 354 (833)
Q Consensus 295 ~~~~~--~g---------------~---~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 354 (833)
.+.+. .+ + ..+|+..|++.+++ -|+. .-..+|...+..+..+
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~--- 173 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR--- 173 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH---
Confidence 44431 11 1 23444555555543 2332 2233444333333221
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 003295 355 PNYVVYNTLIDGYCKKGNISEALKIRDDMVSKG--MSPNSVTFNSLIHGFCKSGQMDNAENALEEM 418 (833)
Q Consensus 355 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~ 418 (833)
=...-..+...|.+.|.+..|..-++.+++.= .+........++.+|.+.|..++|......+
T Consensus 174 -la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 174 -LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred -HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 01111245566778888888888887777641 1223345556677777777777777666544
No 172
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.39 E-value=0.034 Score=50.11 Aligned_cols=131 Identities=15% Similarity=0.186 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCCHHHH
Q 003295 669 LPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASIN---IHPNKITY 745 (833)
Q Consensus 669 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~ 745 (833)
.|++..-..|..++...|+..+|...|++...--..-|....-.+.++....+++..|...++++.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 456655666677777777777777777777654344466666666777777777777777777766532 1222 33
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003295 746 TIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRM 803 (833)
Q Consensus 746 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 803 (833)
..+.+.|...|++.+|...|+.+.. ..|+...-......+.++|+.++|..-+..+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 4566677777777777777777776 4566655555556666777666655444433
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.37 E-value=0.0066 Score=56.90 Aligned_cols=90 Identities=16% Similarity=0.109 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhc-C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 003295 218 LKTCNFLLNSLVKANEVQKGIEVFETMCR-G-VSPD-VFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNII 294 (833)
Q Consensus 218 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~-~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 294 (833)
...+..+...+.+.|++++|...|++... . .+++ ...+..+...+.+.|++++|...+.+..+.... +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 34555666666667777777777776662 1 1121 345666666666667777777766666654221 344455555
Q ss_pred HHHHhcCChhHHHH
Q 003295 295 HGLCRNGRLYEAFH 308 (833)
Q Consensus 295 ~~~~~~g~~~~A~~ 308 (833)
..|...|+...+..
T Consensus 114 ~~~~~~g~~~~a~~ 127 (172)
T PRK02603 114 VIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHcCChHhHhh
Confidence 55555555544443
No 174
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.37 E-value=0.0034 Score=63.89 Aligned_cols=128 Identities=10% Similarity=0.069 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 003295 220 TCNFLLNSLVKANEVQKGIEVFETMCRG--VSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGL 297 (833)
Q Consensus 220 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 297 (833)
+|..++...-+.+..+.|+.+|.++... ...+++...+.+.- .-.++.+.|.++|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 4455555555555555555555555521 12222222222211 1133444455555555543 223444455555555
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003295 298 CRNGRLYEAFHLKEKMVLREVEPSL---ITYSILINGLIKLEKFDDANFVLKEMSV 350 (833)
Q Consensus 298 ~~~g~~~~A~~~~~~m~~~~~~p~~---~t~~~li~~~~~~g~~~~A~~~~~~m~~ 350 (833)
.+.|+.+.|+.+|++.... +.++. ..|...+..=.+.|+++.+..+.+.+.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555543 22111 2444444444445555555555444443
No 175
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.36 E-value=0.0027 Score=64.63 Aligned_cols=130 Identities=15% Similarity=0.142 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 003295 638 VVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCN-IGLIEDAKCLFDEMRKEGLLPNVACYTALIGG 716 (833)
Q Consensus 638 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 716 (833)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|......-.+ .++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666666666666777777777776432 2233444443333223 44555577777776665 34455666666666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 717 YCKLGQMDEAESVLQEMASINIHPNK---ITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 717 ~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
+.+.|+.+.|..+|++.... +.++. ..|...+.-=.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67777777777777777654 23222 3666666666666777777777666666
No 176
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.33 E-value=0.0022 Score=52.68 Aligned_cols=42 Identities=21% Similarity=0.419 Sum_probs=21.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHHh
Q 003295 258 AINAFCKRGRIEDAIGLFTKMEELGI-APNVVTYNNIIHGLCR 299 (833)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~ 299 (833)
.|..+...|++..--.+|+.+++.|+ .|++.+|+.++.+.++
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~ 73 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAK 73 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 33344444555555555555555555 4555555555554443
No 177
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.33 E-value=0.0034 Score=66.23 Aligned_cols=124 Identities=15% Similarity=0.135 Sum_probs=93.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhh
Q 003295 527 GLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKR--GIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYT 604 (833)
Q Consensus 527 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 604 (833)
+...+......+++.+....+.+++..++.+.... ....-..|..++++.|.+.|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44447777777787777777788888888877765 2222344566888888888888888888888888888888888
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHc
Q 003295 605 YGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKI 650 (833)
Q Consensus 605 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 650 (833)
++.|++.+.+.|++..|.++...|...+...++.++...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888887777666777777666666554
No 178
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.33 E-value=0.011 Score=52.66 Aligned_cols=96 Identities=11% Similarity=-0.048 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003295 499 TSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLC 578 (833)
Q Consensus 499 ~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 578 (833)
..-.+...+...|++++|..+|+-+....+. +..-|..|..++-..|++++|+..|.......+. |+..+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 3445555666777777777777777766555 6666667777777777777777777777776543 6667777777777
Q ss_pred hcCCHHHHHHHHHHHhhC
Q 003295 579 SLGKMEEAIELWEECKRT 596 (833)
Q Consensus 579 ~~g~~~~A~~~~~~~~~~ 596 (833)
..|+.+.|.+.|+..+..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777766553
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.31 E-value=0.11 Score=51.61 Aligned_cols=60 Identities=17% Similarity=0.047 Sum_probs=34.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH---HHHHHHHHhcCChhhHHHHHHHHHHCCC
Q 003295 503 LIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTY---NTLILGCCKDGKPEEGFKLKEDMIKRGI 563 (833)
Q Consensus 503 li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~ 563 (833)
....+.+.|++++|.+.|+++....+.. .... -.++.++.+.+++++|...+++.++..+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 3444555666777777777666654432 2221 2344556666666777776666666543
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.30 E-value=0.012 Score=64.89 Aligned_cols=89 Identities=18% Similarity=0.141 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHC-CCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003295 689 EDAKCLFDEMRKE-GLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNV 767 (833)
Q Consensus 689 ~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 767 (833)
..+.+..++.... ....+...|..+.-.....|++++|...++++.+. .|+...|..++..+...|+.++|.+.+++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444332 12335567777766666789999999999999885 46888899999999999999999999999
Q ss_pred HHHcCCCCCHHHHH
Q 003295 768 MAEKGISPDSITYN 781 (833)
Q Consensus 768 m~~~g~~p~~~~~~ 781 (833)
+.. +.|...+|.
T Consensus 479 A~~--L~P~~pt~~ 490 (517)
T PRK10153 479 AFN--LRPGENTLY 490 (517)
T ss_pred HHh--cCCCCchHH
Confidence 888 456555543
No 181
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.29 E-value=0.0039 Score=62.82 Aligned_cols=132 Identities=11% Similarity=0.007 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHH----hCCC-CCCHH
Q 003295 674 TYSSLIHGLCNIGLIEDAKCLFDEMRK----EGLL-PNVACYTALIGGYCKLGQMDEAESVLQEMA----SINI-HPNKI 743 (833)
Q Consensus 674 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~-~p~~~ 743 (833)
.|..|.+.|.-.|+++.|+...+.-+. -|-. .....+..+.+++.-.|+++.|.+.++... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 466666666777888888877654332 2311 133567778888888999999998888754 2221 12234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----c-CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 744 TYTIMIGGYCKLGDMKEAAKLLNVMAE----K-GISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 744 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
+..+|...|.-...+++|+.++++-+. . ...-....|.+|..+|...|..++|..+.+.-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 566788888888889999998877543 1 1122456788999999999999999888776655
No 182
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.29 E-value=0.009 Score=55.97 Aligned_cols=82 Identities=18% Similarity=0.062 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003295 675 YSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPN--VACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGY 752 (833)
Q Consensus 675 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 752 (833)
+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +.+...+..++..+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 33444444444555555555554443211111 2344444455555555555555555554431 22333444444444
Q ss_pred HhcCC
Q 003295 753 CKLGD 757 (833)
Q Consensus 753 ~~~g~ 757 (833)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44444
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.28 E-value=0.13 Score=52.64 Aligned_cols=64 Identities=17% Similarity=0.062 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 003295 464 LLTLLVSGLCKNGKQAEATELCFRLFEKGFTV-----NTV-TSNALIHGMCEAGNLKEAGKLLMEMLQRG 527 (833)
Q Consensus 464 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-----~~~-~~~~li~~~~~~g~~~~A~~~l~~m~~~g 527 (833)
++..+...+.+.|++++|.++|+++....... ++. .+-..+-++...||...|...+++..+..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34556777888899999999998887653322 221 23334446677899999999999987663
No 184
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.51 Score=52.20 Aligned_cols=344 Identities=16% Similarity=0.189 Sum_probs=187.2
Q ss_pred CCCCCCcccHH-----HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHCC
Q 003295 421 RGLSINQGAYT-----SVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGK---QAEATELCFRLFEKG 492 (833)
Q Consensus 421 ~g~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~g 492 (833)
.|++.+..-|. .+|+-+...+.+..|+++...+...-... +..+.....-+.+..+ .+.+..+-+++...
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~- 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK- 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-
Confidence 45555544443 45666777888888888877765443332 5666666666665532 22222333333322
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH
Q 003295 493 FTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLI----LDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNY 568 (833)
Q Consensus 493 ~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 568 (833)
. .....|.........+|+.+-|..+++.=...+-. .+..-+...+.-+.+.|+.+-...++-.+...- +..
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s 579 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRS 579 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHH
Confidence 2 35567888888888899999998887642222111 011223333444445555555555555444320 111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHH-HHHHHC-CCccCHHHHHHHHHH
Q 003295 569 TYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLF-NEMISK-KMELNPVVYNTLIRA 646 (833)
Q Consensus 569 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~-~~~~~~~~~~~li~~ 646 (833)
.+ +.-..+.-.|..+|.+..+.. |.. .+-+.|....+...+-.+. +..... .+.+-........++
T Consensus 580 ~l------~~~l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~ 647 (829)
T KOG2280|consen 580 SL------FMTLRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANA 647 (829)
T ss_pred HH------HHHHHhchhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHH
Confidence 11 111233445556666554421 111 1222232222222221111 110000 011111222233344
Q ss_pred HHHcCChH---HH-------HHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 003295 647 YCKIGNTT---AA-------FRLSNDMKS-RGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIG 715 (833)
Q Consensus 647 ~~~~g~~~---~A-------~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 715 (833)
+.+..... +| +.+.+.+.. .|..-..-+.+--+.-+...|+..+|.++-.+.. .||...|..-+.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~ 723 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLT 723 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHH
Confidence 44433311 12 122222221 1222233345555666778899999988877665 588889988999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHH
Q 003295 716 GYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEE 795 (833)
Q Consensus 716 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 795 (833)
+++..+++++-+++-+.+.+ ++-|.-.+.+|.+.|+.++|.+++.+.- +.. -.+.+|.+.|++.+
T Consensus 724 aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~e 788 (829)
T KOG2280|consen 724 ALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKE 788 (829)
T ss_pred HHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHH
Confidence 99999999988877666542 4557778899999999999999988742 222 56778889999999
Q ss_pred HHHHHH
Q 003295 796 AFKVCD 801 (833)
Q Consensus 796 A~~~~~ 801 (833)
|.+.--
T Consensus 789 Aad~A~ 794 (829)
T KOG2280|consen 789 AADLAA 794 (829)
T ss_pred HHHHHH
Confidence 887643
No 185
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.21 E-value=0.48 Score=51.65 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhcCCCH
Q 003295 745 YTIMIGGYCKLGDMKEAAKLLNVMAE-KGISPDSITYNVFMDGHCKGGNV 793 (833)
Q Consensus 745 ~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~g~~ 793 (833)
|..|..-....|..+.|++..-.+.+ ..+-|-...|..|.-+-+....+
T Consensus 1024 FmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raF 1073 (1189)
T KOG2041|consen 1024 FMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAF 1073 (1189)
T ss_pred HHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhh
Confidence 34444445556666666665444433 12444455565555444444333
No 186
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.16 E-value=0.0056 Score=61.78 Aligned_cols=284 Identities=14% Similarity=0.035 Sum_probs=132.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHH--hh--CCCC-CCHHHHHHHHH
Q 003295 470 SGLCKNGKQAEATELCFRLFEKGFTVNT----VTSNALIHGMCEAGNLKEAGKLLMEM--LQ--RGLI-LDKVTYNTLIL 540 (833)
Q Consensus 470 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~l~~m--~~--~g~~-~~~~~~~~li~ 540 (833)
.-+|+.|+......+|+..++.|.. |. ..|..|..+|.-.+++++|++.-..= .. .|-+ -...+-..|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4578888888888888888887654 32 35666667777777777777653221 00 0100 02223333444
Q ss_pred HHHhcCChhhHHHHHHH----HHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHcc
Q 003295 541 GCCKDGKPEEGFKLKED----MIKRGIQ-PDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKA 615 (833)
Q Consensus 541 ~~~~~g~~~~A~~~~~~----m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 615 (833)
.+--.|.+++|+..-.+ ..+.|-+ .....+..+...|...|+.-... .-.+.|-.++.++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----~pee~g~f~~ev~----------- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE----APEEKGAFNAEVT----------- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC----ChhhcccccHHHH-----------
Confidence 44445566665543222 2222211 01223333444443333210000 0000000000000
Q ss_pred CCHHHHHHHHHHHHHC----CC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHhc
Q 003295 616 DKIEEGETLFNEMISK----KM-ELNPVVYNTLIRAYCKIGNTTAAFRLSNDMK----SRGIL-PTSVTYSSLIHGLCNI 685 (833)
Q Consensus 616 g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~-p~~~~~~~li~~~~~~ 685 (833)
..++.|.++|.+-++. |- -.....|..+.+.|.-.|+++.|+...+.-. +.|-+ .....+..+.+++.-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 0122333333322111 00 0012334445555555666666665544322 11211 1223455666666667
Q ss_pred CCHHHHHHHHHHHHH----CCC-CCChhHHHHHHHHHHhcCChhHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHhc
Q 003295 686 GLIEDAKCLFDEMRK----EGL-LPNVACYTALIGGYCKLGQMDEAESVLQEMAS----I-NIHPNKITYTIMIGGYCKL 755 (833)
Q Consensus 686 g~~~~A~~~~~~m~~----~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~~~~~~~li~~~~~~ 755 (833)
|+++.|.+.|+.... .|- .........|.+.|.-..++++|+.++++-.. . +..-...++.+|..+|...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 777777776665432 110 11223444566666666667777766665332 1 1122334566777777777
Q ss_pred CCHHHHHHHHHHHH
Q 003295 756 GDMKEAAKLLNVMA 769 (833)
Q Consensus 756 g~~~~A~~~~~~m~ 769 (833)
|..++|+.+.+..+
T Consensus 329 g~h~kAl~fae~hl 342 (639)
T KOG1130|consen 329 GEHRKALYFAELHL 342 (639)
T ss_pred hhHHHHHHHHHHHH
Confidence 77777776665544
No 187
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.14 E-value=0.0079 Score=56.15 Aligned_cols=61 Identities=11% Similarity=-0.093 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003295 675 YSSLIHGLCNIGLIEDAKCLFDEMRKEGLLP--NVACYTALIGGYCKLGQMDEAESVLQEMAS 735 (833)
Q Consensus 675 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 735 (833)
|..+...+...|++++|...|++.......+ ...+|..+...+...|++++|+..+++..+
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444445555555555555554431111 123445555555555555555555555554
No 188
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.14 E-value=0.0085 Score=55.93 Aligned_cols=93 Identities=13% Similarity=0.007 Sum_probs=44.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 003295 324 TYSILINGLIKLEKFDDANFVLKEMSVRGFVP--NYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHG 401 (833)
Q Consensus 324 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 401 (833)
.|..+...+...|++++|...|++.......+ ...+|..+...|.+.|++++|++.+++....... ...++..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 33444444445555555555555554332111 1234555555566666666666666555543111 22334444444
Q ss_pred HH-------hcCChhHHHHHHHH
Q 003295 402 FC-------KSGQMDNAENALEE 417 (833)
Q Consensus 402 ~~-------~~g~~~~A~~~l~~ 417 (833)
+. +.|++++|...+++
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHH
Confidence 44 55555544444443
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.08 E-value=0.073 Score=48.07 Aligned_cols=131 Identities=15% Similarity=0.099 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CChhhHHHH
Q 003295 216 PSLKTCNFLLNSLVKANEVQKGIEVFETMCRG-VSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIA-PNVVTYNNI 293 (833)
Q Consensus 216 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~l 293 (833)
|.+..-..|..++.+.|++.+|...|++...| +..|......+.++....+++.+|...++++-+.... -.+.+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 55666667777788888888888888888754 4456666777777777788888888888777664311 112334455
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 003295 294 IHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEM 348 (833)
Q Consensus 294 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 348 (833)
...|...|++++|..-|+..... -|+...-.-....+.++|+.+++..-+.++
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 66677777777777777777654 344433333334455666666555444443
No 190
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.07 E-value=0.087 Score=56.57 Aligned_cols=103 Identities=22% Similarity=0.213 Sum_probs=55.5
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHH
Q 003295 356 NYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIK 435 (833)
Q Consensus 356 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~ 435 (833)
-.+.+.+-+..|...|.+++|.++--- |+ ...-|..|..--...=+++-|++.|.+....
T Consensus 555 ~evp~~~~m~q~Ieag~f~ea~~iacl----gV--v~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl-------------- 614 (1081)
T KOG1538|consen 555 VEVPQSAPMYQYIERGLFKEAYQIACL----GV--TDTDWRELAMEALEALDFETARKAYIRVRDL-------------- 614 (1081)
T ss_pred ccccccccchhhhhccchhhhhccccc----ce--ecchHHHHHHHHHhhhhhHHHHHHHHHHhcc--------------
Confidence 344555556667788888877654211 11 1223444444444444555555555444332
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003295 436 WLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFR 487 (833)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 487 (833)
.+-+-+.-++++.++|-.|++.. +...++-.|++.+|..+|.+
T Consensus 615 ------~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 615 ------RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred ------HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 12233445667777777777643 34455667777777766543
No 191
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.024 Score=55.81 Aligned_cols=99 Identities=13% Similarity=0.097 Sum_probs=57.1
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHH
Q 003295 705 PNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLG---DMKEAAKLLNVMAEKGISPDSITYN 781 (833)
Q Consensus 705 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~ 781 (833)
-|...|..|...|...|+.+.|..-|.+..+.. ++|...+..+..++..+. ...++..+|++++... +-|..+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 355666666666666666666666666666542 445555555555544332 2345666666666532 22445555
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 782 VFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 782 ~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
.|...+..+|++.+|...|+.|++
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 566666666666666666666665
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.03 E-value=0.0025 Score=49.09 Aligned_cols=63 Identities=24% Similarity=0.261 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Q 003295 741 NKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISP-DSITYNVFMDGHCKGG-NVEEAFKVCDRMLS 805 (833)
Q Consensus 741 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 805 (833)
+..+|..++..+...|++++|+..|++.++. .| +...|..++.++...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3456666666677777777777777777664 34 4456666666777776 56777776666655
No 193
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.03 E-value=0.0097 Score=55.53 Aligned_cols=114 Identities=21% Similarity=0.357 Sum_probs=60.2
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 003295 238 IEVFETMCRGVSPDVFLFSTAINAFCKR-----GRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEK 312 (833)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 312 (833)
...|+... +...|..+|..++..|.+. |.++=....+..|.+.|++-|..+|+.|++.+=+ |.+- -..+|+.
T Consensus 34 ~~~f~~~~-~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~ 110 (228)
T PF06239_consen 34 EELFERAP-GQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQA 110 (228)
T ss_pred HHHHHHHh-hccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHH
Confidence 34444442 2345666777777766643 5556566666666666666666666666666543 3322 1122222
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC
Q 003295 313 MVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKG 371 (833)
Q Consensus 313 m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g 371 (833)
+--. --.+.+-|+.++++|...|+.||..++..|++.+.+.+
T Consensus 111 ~F~h-----------------yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 111 EFMH-----------------YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred Hhcc-----------------CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 2110 01123445666666666666666666666666664433
No 194
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.01 E-value=0.13 Score=55.37 Aligned_cols=56 Identities=14% Similarity=0.003 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 003295 531 DKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKR 595 (833)
Q Consensus 531 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 595 (833)
+..+...+..-+.+...+.-|.++|..|-. ...+++.....+++++|..+-+...+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc
Confidence 334444444444455566667777766643 23455666677777777776655443
No 195
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.15 Score=48.81 Aligned_cols=141 Identities=15% Similarity=0.046 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHH-----
Q 003295 638 VVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTA----- 712 (833)
Q Consensus 638 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~----- 712 (833)
.+.+.++..+...|.+.-...++++.++...+.+......|.+.-.+.|+.+.|...|++..+..-..|..+.+.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 345566677777778888888888888877677888888888888899999999999997765422333333333
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003295 713 LIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYN 781 (833)
Q Consensus 713 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 781 (833)
....|.-++++.+|...+.++...+ +.|...-|.-.-+..-.|+..+|++.++.|.+ ..|.+.+-+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhh
Confidence 3344556778899999999888765 55666666666666678999999999999998 456554444
No 196
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.01 E-value=0.54 Score=48.49 Aligned_cols=108 Identities=13% Similarity=0.133 Sum_probs=72.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003295 605 YGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCN 684 (833)
Q Consensus 605 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 684 (833)
.+.-|.-+...|+...|.++-.+.. .|+...|-..+.+++..++|++-.++... +-++.-|...+.+|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 3344555566777777777655542 46777888888888888888766654332 1234667788888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 003295 685 IGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQE 732 (833)
Q Consensus 685 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 732 (833)
.|...+|..+..++ + +..-+..|.+.|++.+|.+..-+
T Consensus 250 ~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 250 YGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888777761 1 13456677788888888766444
No 197
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.99 E-value=0.016 Score=54.09 Aligned_cols=103 Identities=18% Similarity=0.236 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 003295 669 LPTSVTYSSLIHGLCNI-----GLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKI 743 (833)
Q Consensus 669 ~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 743 (833)
..+..+|..+++.+.+. |.++=....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+--
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~-------- 113 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM-------- 113 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc--------
Confidence 44777777777777643 5666666777777777777788888888777643 3221 1111111110
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 003295 744 TYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKG 790 (833)
Q Consensus 744 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 790 (833)
-.-.+-+-|++++++|...|+-||..++..|++.+.+.
T Consensus 114 ---------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 114 ---------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred ---------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 00123345666667776667777777777666666443
No 198
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.99 E-value=0.0023 Score=49.21 Aligned_cols=64 Identities=23% Similarity=0.284 Sum_probs=45.8
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 003295 706 NVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLG-DMKEAAKLLNVMAE 770 (833)
Q Consensus 706 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 770 (833)
+...|..+...+...|++++|+..|++.++.+ +.+...|..+..+|...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34566777777777777777777777777753 445667777777777777 67777777777766
No 199
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.99 E-value=0.0027 Score=48.69 Aligned_cols=51 Identities=25% Similarity=0.344 Sum_probs=25.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 754 KLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 754 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
+.|++++|++.|+++.+.. +-+...+..++.+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555555555431 22444455555555555555555555555554
No 200
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.97 E-value=0.0029 Score=48.01 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=23.3
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 716 GYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 716 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
.+.+.|++++|.+.|+++++.. +-+...+..+..++...|++++|...|+++++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444444444432 22333444444444444444444444444443
No 201
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.93 E-value=0.004 Score=47.18 Aligned_cols=57 Identities=16% Similarity=0.279 Sum_probs=33.9
Q ss_pred HHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003295 225 LNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEEL 281 (833)
Q Consensus 225 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (833)
...+.+.|++++|...|+++++..|.+...+..+..++.+.|++++|...|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344556666666666666666444555666666666666666666666666666553
No 202
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.92 E-value=0.0021 Score=49.28 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=26.9
Q ss_pred hcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003295 230 KANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEEL 281 (833)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (833)
+.|++++|+..|+++....|.+...+..++.+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455555555555555333445555555555555555555555555555543
No 203
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.91 E-value=0.6 Score=47.53 Aligned_cols=300 Identities=15% Similarity=0.102 Sum_probs=181.0
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH--HhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003295 500 SNALIHGMCE--AGNLKEAGKLLMEMLQRGLILDKVTYNTLILGC--CKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLH 575 (833)
Q Consensus 500 ~~~li~~~~~--~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 575 (833)
|..|-.++.. .|+-..|.++-.+..+. +..|....-.|+.+- .-.|+++.|.+-|+.|... ++.-.-.+..|.-
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyl 162 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYL 162 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHH
Confidence 4444444333 45666666665554322 222444444444432 3468888888888888763 1111112223333
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-CccCHHH--HHHHHHHHH---H
Q 003295 576 GLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKK-MELNPVV--YNTLIRAYC---K 649 (833)
Q Consensus 576 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~--~~~li~~~~---~ 649 (833)
..-+.|+.+.|.++-+.....- +--...+...+...|..|+|+.|+++++.-.... +.++..- -..|+.+-. -
T Consensus 163 eAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence 3446688888888777766542 2234567778888888888888888887765432 2233221 112222211 1
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHH-
Q 003295 650 IGNTTAAFRLSNDMKSRGILPTSVTY-SSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAE- 727 (833)
Q Consensus 650 ~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~- 727 (833)
..+...|...-.+..+. .||..-- ..-..++.+.|++.++-.+++.+-+. .|.+.++... .+.+.|+.....
T Consensus 242 dadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~lY--~~ar~gdta~dRl 315 (531)
T COG3898 242 DADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALLY--VRARSGDTALDRL 315 (531)
T ss_pred cCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHHH--HHhcCCCcHHHHH
Confidence 23455565555555443 5554432 23357788999999999999999986 4555544332 334566543221
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHC
Q 003295 728 SVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKG-GNVEEAFKVCDRMLSE 806 (833)
Q Consensus 728 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 806 (833)
+-.+++.+.. +.|..+...+..+-...|++..|..--+.... ..|....|..|.+.-... |+-.++..++-+.++.
T Consensus 316 kRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 316 KRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 2222333321 33456777888888899999999888777776 578888898888877655 9999999999888875
Q ss_pred CCCCC
Q 003295 807 GLSLD 811 (833)
Q Consensus 807 g~~p~ 811 (833)
--.|+
T Consensus 393 PrdPa 397 (531)
T COG3898 393 PRDPA 397 (531)
T ss_pred CCCCc
Confidence 44444
No 204
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.047 Score=53.87 Aligned_cols=116 Identities=15% Similarity=0.099 Sum_probs=60.5
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHhCCCCCCh
Q 003295 246 RGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNG---RLYEAFHLKEKMVLREVEPSL 322 (833)
Q Consensus 246 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~ 322 (833)
...|.|...|-.|..+|...|++..|...|.+..+... +|...+..+..++.... .-.++..+|+++...+ +-|+
T Consensus 150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~i 227 (287)
T COG4235 150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANI 227 (287)
T ss_pred HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccH
Confidence 33455666666666666666666666666666655422 23444444444443221 2345566666666542 2344
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 003295 323 ITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLID 365 (833)
Q Consensus 323 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~ 365 (833)
.+...|.-.+...|++.+|...++.|.+. .|....+..+|.
T Consensus 228 ral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 228 RALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 44444555566666666666666666654 233333444443
No 205
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.82 E-value=0.064 Score=46.09 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=24.4
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 716 GYCKLGQMDEAESVLQEMASINIHPN--KITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 716 ~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
++-..|+.++|+.+|++..+.|.... ...+..+...+...|++++|..++++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444444444444443322 12333444444444555555555444443
No 206
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.78 E-value=0.058 Score=46.34 Aligned_cols=84 Identities=13% Similarity=0.070 Sum_probs=44.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCC---CHHHHHHHHHHHHhcCChhH
Q 003295 196 NLGFGYAIDVFSIFSSKGIFPS--LKTCNFLLNSLVKANEVQKGIEVFETMCRGVSP---DVFLFSTAINAFCKRGRIED 270 (833)
Q Consensus 196 ~~~~~~A~~~f~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~ 270 (833)
.|+.++|+..|++....|.... ...+-.+.+.+...|++++|..++++.....|. +......+.-++...|+.++
T Consensus 14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~e 93 (120)
T PF12688_consen 14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKE 93 (120)
T ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHH
Confidence 4556666666666666555433 234445555666666666666666666532222 22222223335555666666
Q ss_pred HHHHHHHHH
Q 003295 271 AIGLFTKME 279 (833)
Q Consensus 271 A~~~~~~m~ 279 (833)
|++.+-...
T Consensus 94 Al~~~l~~l 102 (120)
T PF12688_consen 94 ALEWLLEAL 102 (120)
T ss_pred HHHHHHHHH
Confidence 666655544
No 207
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.74 E-value=0.15 Score=49.22 Aligned_cols=167 Identities=18% Similarity=0.183 Sum_probs=81.8
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 003295 224 LLNSLVKANEVQKGIEVFETMCRGV---SPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRN 300 (833)
Q Consensus 224 ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 300 (833)
....+.+.|++.+|...|+.+.... +--..+...++.++.+.|++++|...|++..+.-+......+...+.|.+.-
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 3344556777777777777776212 2223445566777777777777777777776653322222233333332211
Q ss_pred -------------CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 003295 301 -------------GRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGY 367 (833)
Q Consensus 301 -------------g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~ 367 (833)
+...+|...|+.++.. |=...-..+|...+.++... =...-..+...|
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~~---------------yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIKR---------------YPNSEYAEEAKKRLAELRNR----LAEHELYIARFY 151 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHHH----------------TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHHH---------------CcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 1223344444444332 22233334444444443321 011112345667
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCh----hHHHHHHHHHHhcCChhHH
Q 003295 368 CKKGNISEALKIRDDMVSKGMSPNS----VTFNSLIHGFCKSGQMDNA 411 (833)
Q Consensus 368 ~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A 411 (833)
.+.|.+..|..-++.+++. -|+. .....++..|.+.|..+.|
T Consensus 152 ~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 7777777777777777765 2332 2345566666666665543
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.32 Score=46.64 Aligned_cols=131 Identities=12% Similarity=0.063 Sum_probs=78.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHH-----H
Q 003295 535 YNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVM-----I 609 (833)
Q Consensus 535 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-----i 609 (833)
.+.++..+.-.|.+.-...++.+.++...+-++.....+++.-.+.|+.+.|...|++..+..-..|..+.+.+ .
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 34455555556666677777777777665566677777777777777777777777765543323333333332 2
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003295 610 DGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSR 666 (833)
Q Consensus 610 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 666 (833)
..|.-++++.+|...+.++...... |++.-|.-.-+..-.|+...|++..+.|...
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344556666666666666655433 4555554444444456666666666666655
No 209
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.9 Score=51.03 Aligned_cols=117 Identities=15% Similarity=0.220 Sum_probs=58.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 003295 222 NFLLNSLVKANEVQKGIEVFETMCRGVSPD--VFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCR 299 (833)
Q Consensus 222 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 299 (833)
-.-++.+.+...++.|..+-+.-. ..++ .........-+.+.|++++|...|-+-... ++|. -+|.-|..
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLD 409 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcC
Confidence 344555566666666665554432 1111 112222333344566666666666555432 1221 23444445
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 003295 300 NGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKE 347 (833)
Q Consensus 300 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 347 (833)
..++.+-..+++.+.+.|+. +..--+.|+.+|.+.++.++-.+..+.
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 55555555666666665543 333335566666666666655444443
No 210
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.53 E-value=0.032 Score=55.70 Aligned_cols=84 Identities=13% Similarity=0.070 Sum_probs=39.6
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhc
Q 003295 718 CKLGQMDEAESVLQEMASINIHPNK----ITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPD----SITYNVFMDGHCK 789 (833)
Q Consensus 718 ~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~ 789 (833)
.+.|++++|...|+.+++. .|+. ..+..++..|...|++++|...|+.+++. .|+ ...+..++..+..
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~klg~~~~~ 229 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKVGVIMQD 229 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHHHHHHHH
Confidence 3345555555555555442 1221 24444555555555555555555555542 121 2334444444555
Q ss_pred CCCHHHHHHHHHHHHH
Q 003295 790 GGNVEEAFKVCDRMLS 805 (833)
Q Consensus 790 ~g~~~~A~~~~~~m~~ 805 (833)
.|+.++|.++++++++
T Consensus 230 ~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 230 KGDTAKAKAVYQQVIK 245 (263)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555554
No 211
>PRK15331 chaperone protein SicA; Provisional
Probab=96.47 E-value=0.11 Score=46.63 Aligned_cols=90 Identities=12% Similarity=-0.015 Sum_probs=67.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCH
Q 003295 714 IGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNV 793 (833)
Q Consensus 714 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 793 (833)
..-+...|++++|..+|+-+.-.+ +-|..-|..|..++-..+++++|+..|..+...+ .-|+..+-..+.++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 344456788888888888877654 4466667778888888888888888888776643 23555666777888888888
Q ss_pred HHHHHHHHHHHH
Q 003295 794 EEAFKVCDRMLS 805 (833)
Q Consensus 794 ~~A~~~~~~m~~ 805 (833)
++|..-|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888888888877
No 212
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.44 E-value=0.31 Score=46.99 Aligned_cols=58 Identities=16% Similarity=0.104 Sum_probs=29.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 003295 470 SGLCKNGKQAEATELCFRLFEKGFT--VNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRG 527 (833)
Q Consensus 470 ~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g 527 (833)
..+...|++++|...|+.+...-+. --....-.++.++.+.|++++|...+++..+.-
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3445556666666666665554211 112344455566666666666666666666553
No 213
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.25 E-value=0.06 Score=53.76 Aligned_cols=87 Identities=9% Similarity=-0.001 Sum_probs=38.7
Q ss_pred HhcCChhHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCh
Q 003295 229 VKANEVQKGIEVFETMCRGVSPD---VFLFSTAINAFCKRGRIEDAIGLFTKMEELGIA--PNVVTYNNIIHGLCRNGRL 303 (833)
Q Consensus 229 ~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~ 303 (833)
.+.|++++|...|+.++...|.+ ..++..+..+|...|++++|...|+.+.+.-+. .....+-.++..+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 44455555555555555222222 123444555555555555555555555543111 0012222233344445555
Q ss_pred hHHHHHHHHHHh
Q 003295 304 YEAFHLKEKMVL 315 (833)
Q Consensus 304 ~~A~~~~~~m~~ 315 (833)
++|...|++..+
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.22 E-value=0.027 Score=43.74 Aligned_cols=54 Identities=24% Similarity=0.191 Sum_probs=24.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 751 GYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 751 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
.|.+.+++++|.+.+++++..+ +.+...+...+..+.+.|++++|.+.+++.++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444445555555555544421 11334444444445555555555555555444
No 215
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.22 E-value=0.027 Score=43.79 Aligned_cols=56 Identities=20% Similarity=0.164 Sum_probs=37.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003295 715 GGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEK 771 (833)
Q Consensus 715 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 771 (833)
..|.+.+++++|.+.++++...+ +.+...|.....++.+.|++++|.+.+++.++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45666777777777777777653 445556666777777777777777777777763
No 216
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.22 E-value=1.8 Score=44.66 Aligned_cols=110 Identities=20% Similarity=0.222 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 003295 639 VYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYC 718 (833)
Q Consensus 639 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 718 (833)
+.+..|.-+...|+...|.++-++. . .|+..-|...+.+++..++|++-.++... . -.+.-|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHH
Confidence 4455566677788888887776655 2 47888899999999999999887765432 1 23467888999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003295 719 KLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVM 768 (833)
Q Consensus 719 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 768 (833)
+.|+..+|..++.++ + +..-+..|.+.|++.+|.+..-+.
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999999888772 2 245677888999999998775543
No 217
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.21 E-value=1.7 Score=44.38 Aligned_cols=219 Identities=17% Similarity=0.107 Sum_probs=105.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCHHHH--HHHHHHHH---hcC
Q 003295 473 CKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRG-LILDKVTY--NTLILGCC---KDG 546 (833)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g-~~~~~~~~--~~li~~~~---~~g 546 (833)
.+.|..+.|..+-+...+.-. .-...+...+...|..|+++.|+++++.-.+.. +.++..-- ..|+.+-. -..
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 455666666666666555422 234567778888888888888888887765542 22222211 11221111 112
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHH-HHH
Q 003295 547 KPEEGFKLKEDMIKRGIQPDNYTY-NLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEG-ETL 624 (833)
Q Consensus 547 ~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~ 624 (833)
+...|...-.+..+ +.||..-- ..-..++.+.|+..++-.+++.+-+....|++ + .+..+.+.|+.... .+-
T Consensus 244 dp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdta~dRlkR 317 (531)
T COG3898 244 DPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDTALDRLKR 317 (531)
T ss_pred ChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCcHHHHHHH
Confidence 33344444333333 23333221 12234566666666666666666665333332 2 11223344432211 111
Q ss_pred HHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHC
Q 003295 625 FNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCN-IGLIEDAKCLFDEMRKE 701 (833)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~ 701 (833)
...+...... +......+..+-...|++..|..--+..... .|....|..|.+.-.. .|+-.++..++.+..+.
T Consensus 318 a~~L~slk~n-naes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 318 AKKLESLKPN-NAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHhcCcc-chHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 1111111111 4444555555555566666655555544433 4555555555554433 36666666666666553
No 218
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.21 E-value=0.15 Score=46.14 Aligned_cols=56 Identities=25% Similarity=0.357 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003295 747 IMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRM 803 (833)
Q Consensus 747 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 803 (833)
.++..+...|++++|....++++... +-|...|..++.+|...|+..+|.++|+++
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 34444444555555555555554421 113444555555555555555555554444
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.13 E-value=0.024 Score=44.79 Aligned_cols=63 Identities=22% Similarity=0.273 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC---C-HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 743 ITYTIMIGGYCKLGDMKEAAKLLNVMAEK--GISP---D-SITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 743 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
.+|+.+...|...|++++|++.++++++. ...+ + ..++..++..+...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35566666666666666666666666542 0111 1 34566667777777777777777666553
No 220
>PRK15331 chaperone protein SicA; Provisional
Probab=96.11 E-value=0.078 Score=47.58 Aligned_cols=88 Identities=10% Similarity=0.003 Sum_probs=52.0
Q ss_pred HhhhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHH
Q 003295 192 TQFKNLGFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDA 271 (833)
Q Consensus 192 ~~~~~~~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 271 (833)
..+..|++++|..+|+.+...++. +..-|..|..++...+++++|...|.....-.+.|...+--...+|...|+.++|
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 344566677777777666555544 4555666666666666677776666665521123333334466666666666666
Q ss_pred HHHHHHHHH
Q 003295 272 IGLFTKMEE 280 (833)
Q Consensus 272 ~~~~~~m~~ 280 (833)
+..|+....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666666665
No 221
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.00 E-value=1.4 Score=45.88 Aligned_cols=28 Identities=11% Similarity=0.103 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003295 744 TYTIMIGGYCKLGDMKEAAKLLNVMAEK 771 (833)
Q Consensus 744 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 771 (833)
.+.+++.++.-.|++++|.+..++|...
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4455666666677777777777777653
No 222
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.99 E-value=0.16 Score=46.00 Aligned_cols=69 Identities=25% Similarity=0.328 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH-----hCCCCCChhh
Q 003295 255 FSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMV-----LREVEPSLIT 324 (833)
Q Consensus 255 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~t 324 (833)
...++..+...|++++|..+..++....+. |...|..+|.+|.+.|+..+|.+.|+++. +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 334555555566666666666665554322 45556666666666666666666655553 2355555544
No 223
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=2.7 Score=47.46 Aligned_cols=143 Identities=14% Similarity=0.152 Sum_probs=100.6
Q ss_pred HHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChh
Q 003295 225 LNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLY 304 (833)
Q Consensus 225 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 304 (833)
.+-+.+.|++++|...|-+...-..|. -+|.-|....++.+-...++.+.+.|.. +..--..|+.+|.+.++.+
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~~le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIGFLEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHcccCChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchH
Confidence 445668899999999998887444443 2677778888889999999999999876 6677788999999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 003295 305 EAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMV 384 (833)
Q Consensus 305 ~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 384 (833)
+-.++.+.-. .|.- ..-....+..+.+.+-.++|..+-..... +......+ +-..|++++|++.+..+.
T Consensus 449 kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 449 KLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 8877765543 2211 11234556666677777777666555432 23333333 346789999999987764
No 224
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.90 E-value=3.4 Score=45.02 Aligned_cols=187 Identities=12% Similarity=0.051 Sum_probs=101.3
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003295 601 DIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIH 680 (833)
Q Consensus 601 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 680 (833)
+..+|...++.-.+.|+.+.+.-+|+...--- ..-...|-..+.-....|+.+-|..++....+-.++-...+-..-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35567777777777788877777777765321 11233444445444555777777766666555433322222221222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChh-HHHHHHHHHHhcCChhHHH---HHHHHHHhCCCCCCH--HHHHHHHHH-HH
Q 003295 681 GLCNIGLIEDAKCLFDEMRKEGLLPNVA-CYTALIGGYCKLGQMDEAE---SVLQEMASINIHPNK--ITYTIMIGG-YC 753 (833)
Q Consensus 681 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~---~~~~~m~~~g~~p~~--~~~~~li~~-~~ 753 (833)
..-..|+...|..+++...+. . |+.+ .-..-+....+.|+.+.+. +++....+....+.. ..+....+- +.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 233467888888888888776 2 5432 2223345556677777777 333333221111111 111111111 33
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 003295 754 KLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGG 791 (833)
Q Consensus 754 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 791 (833)
-.++.+.|..++.++.+. .+++...|..+++.+...+
T Consensus 453 i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 456778888888888774 3445566777776665554
No 225
>PRK11906 transcriptional regulator; Provisional
Probab=95.85 E-value=0.38 Score=50.88 Aligned_cols=145 Identities=10% Similarity=0.031 Sum_probs=99.5
Q ss_pred ChHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc
Q 003295 652 NTTAAFRLSNDMKSR-GILPT-SVTYSSLIHGLCN---------IGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKL 720 (833)
Q Consensus 652 ~~~~A~~~~~~m~~~-~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 720 (833)
..+.|+.+|.+.... .+.|+ ...|..+..++.. .....+|.++-++..+.+ +-|......+..++.-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 356788889888832 23443 3445544444322 223556777788888764 45777777888877888
Q ss_pred CChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhcCCCHHHH
Q 003295 721 GQMDEAESVLQEMASINIHPN-KITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDS---ITYNVFMDGHCKGGNVEEA 796 (833)
Q Consensus 721 g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~~A 796 (833)
|+++.|...|++.... .|| ..+|......+.-.|+.++|.+.+++..+ +.|.. ......++.|+..+ .++|
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNP-LKNN 426 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCc-hhhh
Confidence 8899999999999885 455 55777778888889999999999999887 45643 33444555676654 5777
Q ss_pred HHHHHH
Q 003295 797 FKVCDR 802 (833)
Q Consensus 797 ~~~~~~ 802 (833)
++++-+
T Consensus 427 ~~~~~~ 432 (458)
T PRK11906 427 IKLYYK 432 (458)
T ss_pred HHHHhh
Confidence 777643
No 226
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.78 E-value=2.1 Score=41.76 Aligned_cols=194 Identities=20% Similarity=0.160 Sum_probs=80.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC-CCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHH
Q 003295 606 GVMIDGFCKADKIEEGETLFNEMISK-KMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIH-GLC 683 (833)
Q Consensus 606 ~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~-~~~ 683 (833)
......+...+.+..+...+...... ........+......+...++...+.+.+.........+ ......... .+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 141 (291)
T COG0457 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALY 141 (291)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHH
Confidence 33334444444444444444443321 111233333334444444444444444444444332111 111111111 344
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC----ChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCH
Q 003295 684 NIGLIEDAKCLFDEMRKEGLLP----NVACYTALIGGYCKLGQMDEAESVLQEMASINIHP-NKITYTIMIGGYCKLGDM 758 (833)
Q Consensus 684 ~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~ 758 (833)
..|++++|...+.+.... .| ....+......+...++.++|...+.+..... +. ....+..+...+...+++
T Consensus 142 ~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 142 ELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccH
Confidence 555555555555554331 11 11222222222344455555555555555431 22 234455555555555555
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 759 KEAAKLLNVMAEKGISPD-SITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 759 ~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
++|...+...... .|+ ...+..+...+...|..+++...+.+...
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555542 222 23333333333344445555555555444
No 227
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.78 E-value=2.8 Score=49.33 Aligned_cols=79 Identities=23% Similarity=0.260 Sum_probs=38.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhh
Q 003295 471 GLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEE 550 (833)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 550 (833)
+|..+|++.+|..+..++.... .--..+-..|+.-+...++.-+|-+++.+..+. ....+..+|+...+++
T Consensus 974 a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~e 1044 (1265)
T KOG1920|consen 974 AYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEE 1044 (1265)
T ss_pred HHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHH
Confidence 3444556666665555543320 000112244555566666666666666665443 1223344555555566
Q ss_pred HHHHHHHH
Q 003295 551 GFKLKEDM 558 (833)
Q Consensus 551 A~~~~~~m 558 (833)
|+.+-...
T Consensus 1045 Alrva~~~ 1052 (1265)
T KOG1920|consen 1045 ALRVASKA 1052 (1265)
T ss_pred HHHHHHhc
Confidence 65554443
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.73 E-value=0.028 Score=44.35 Aligned_cols=63 Identities=27% Similarity=0.399 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 708 ACYTALIGGYCKLGQMDEAESVLQEMASI--NIH---PN-KITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 708 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
.+|+.+...|...|++++|+..|++..+. ... |+ ..++..+..+|...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666667777777777777777766531 011 11 34667777777777777777777777654
No 229
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.71 E-value=1.8 Score=45.13 Aligned_cols=31 Identities=13% Similarity=0.300 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Q 003295 776 DSITYNVFMDGHCKGGNVEEAFKVCDRMLSE 806 (833)
Q Consensus 776 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 806 (833)
|-..+..++.++.-.|+.++|.+..++|...
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 5566788899999999999999999999985
No 230
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.62 E-value=4.4 Score=44.25 Aligned_cols=186 Identities=17% Similarity=0.113 Sum_probs=114.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 003295 566 DNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIR 645 (833)
Q Consensus 566 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 645 (833)
+..+|...++--.+.|+.+.+.-+|+...-. +..-...|-..+......|+.+-|..++....+-..+-.+.+--.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4567888888888889999999988887642 111223344445555556888888877776655443323322222222
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHH---HHHHHHHCCCCCChhHHHHHHHHHH---
Q 003295 646 AYCKIGNTTAAFRLSNDMKSRGILPTSVT-YSSLIHGLCNIGLIEDAKC---LFDEMRKEGLLPNVACYTALIGGYC--- 718 (833)
Q Consensus 646 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~---~~~~m~~~g~~p~~~~~~~li~~~~--- 718 (833)
..-..|+.+.|..+++...+.- |+..- -..-+....+.|..+.+.. ++..... | .-+..+...+.--+.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~-~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-G-KENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-c-ccCcchhHHHHHHHHHHH
Confidence 2344689999999999988763 44432 2223455567788888774 3332222 1 122222233322222
Q ss_pred --hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003295 719 --KLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGD 757 (833)
Q Consensus 719 --~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 757 (833)
-.++.+.|..++.++.+. .+++...|..+++.+..++.
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCc
Confidence 357889999999999886 47777888888887776653
No 231
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.21 Score=51.33 Aligned_cols=95 Identities=18% Similarity=0.167 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHH
Q 003295 708 ACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDS-ITYNVFMDG 786 (833)
Q Consensus 708 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~ 786 (833)
.++..+..+|.+.+++.+|++..++..+.+ ++|.....--..+|...|+++.|+..|+++++ +.|+. .+-+-|+..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 356667778888888999998888888876 77788888888888888999999999999888 56644 444444444
Q ss_pred HhcCCCH-HHHHHHHHHHHH
Q 003295 787 HCKGGNV-EEAFKVCDRMLS 805 (833)
Q Consensus 787 ~~~~g~~-~~A~~~~~~m~~ 805 (833)
-.+.... +...++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 4443333 344777888876
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.45 E-value=0.068 Score=56.16 Aligned_cols=100 Identities=12% Similarity=0.064 Sum_probs=73.1
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003295 705 PNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNK----ITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITY 780 (833)
Q Consensus 705 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 780 (833)
.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..++++++.+ .+ .|
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f 146 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KF 146 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hH
Confidence 35678899999999999999999999999884 5664 358999999999999999999999999852 22 12
Q ss_pred HHHHH--HHhcCCCHHHHHHHHHHHHHCCCCC
Q 003295 781 NVFMD--GHCKGGNVEEAFKVCDRMLSEGLSL 810 (833)
Q Consensus 781 ~~l~~--~~~~~g~~~~A~~~~~~m~~~g~~p 810 (833)
..+.. .+..-.+.++..++++.+.+.|...
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk~G~~~ 178 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARKGGEDI 178 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHHhCCcc
Confidence 21111 1112234457777888888776543
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.44 E-value=0.15 Score=53.73 Aligned_cols=66 Identities=20% Similarity=0.113 Sum_probs=58.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003295 669 LPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNV----ACYTALIGGYCKLGQMDEAESVLQEMASI 736 (833)
Q Consensus 669 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 736 (833)
+.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|.+.|+.++|+..++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 446778999999999999999999999999984 5764 35899999999999999999999999985
No 234
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=0.38 Score=47.85 Aligned_cols=154 Identities=11% Similarity=-0.002 Sum_probs=84.0
Q ss_pred ccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHH
Q 003295 614 KADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSR---GILPTSVTYSSLIHGLCNIGLIED 690 (833)
Q Consensus 614 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~ 690 (833)
..|+..+|...++++++.-+. |...++-.-.+|.-.|+.+.-...+++.... +++-....-....-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 366666776677777666444 6666666666777777776666666666543 211112222223334456677777
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003295 691 AKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASI---NIHPNKITYTIMIGGYCKLGDMKEAAKLLNV 767 (833)
Q Consensus 691 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 767 (833)
|++.-++..+-+ +-|.-.-.++...+...|+..++.++..+-... +...-..-|-...-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 777666666532 234444555566666667777776665544321 0000111233333344555667777777765
Q ss_pred HH
Q 003295 768 MA 769 (833)
Q Consensus 768 m~ 769 (833)
-+
T Consensus 273 ei 274 (491)
T KOG2610|consen 273 EI 274 (491)
T ss_pred HH
Confidence 44
No 235
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.16 E-value=7 Score=43.78 Aligned_cols=111 Identities=22% Similarity=0.325 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 003295 638 VVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGY 717 (833)
Q Consensus 638 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 717 (833)
.+.+--+.-+...|+..+|.++-.+.+ -||...|..=+.+++..+++++-+++-+.+. .+.-|.-.+.+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 345555666677888888888877653 5688888888899999999988766554433 245567788899
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003295 718 CKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNV 767 (833)
Q Consensus 718 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 767 (833)
.+.|+.++|.+++.+... .. ....+|.+.|++.+|.+..-+
T Consensus 755 ~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHHH
Confidence 999999999998776532 11 567788899999999876544
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=1.9 Score=42.73 Aligned_cols=143 Identities=13% Similarity=0.108 Sum_probs=85.9
Q ss_pred HHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH
Q 003295 226 NSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYE 305 (833)
Q Consensus 226 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 305 (833)
..+...|++.+|...|+....-.+.+...-..++.+|...|++++|..++..+...--.........-|..+.+.....+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 34567788888888888888444555666667888888999999999988888754211111121223444445555555
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCChhhHHHHHHHHHHcC
Q 003295 306 AFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVR--GFVPNYVVYNTLIDGYCKKG 371 (833)
Q Consensus 306 A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~y~~li~~~~~~g 371 (833)
...+-++.... +.|...-..+...+...|+.++|.+.+-.+.++ |.. |...-..|+..+.--|
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 55554444442 235555666666777777777777666666543 222 3444455555554444
No 237
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.01 E-value=0.48 Score=40.21 Aligned_cols=91 Identities=15% Similarity=0.037 Sum_probs=68.9
Q ss_pred HHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh---hHHHHHHHHHhcCCh
Q 003295 227 SLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVV---TYNNIIHGLCRNGRL 303 (833)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~ 303 (833)
++...|+++.|++.|.+.+.-.|.+...||.-..++--+|+.++|++-+++..+..-.-... .|-.-...|-..|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 56778999999999999886677788889999999999999999999888887652211221 233333456677888
Q ss_pred hHHHHHHHHHHhCC
Q 003295 304 YEAFHLKEKMVLRE 317 (833)
Q Consensus 304 ~~A~~~~~~m~~~~ 317 (833)
+.|+.-|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 99998888887766
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=3.3 Score=41.13 Aligned_cols=148 Identities=11% Similarity=0.025 Sum_probs=96.8
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhH
Q 003295 646 AYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDE 725 (833)
Q Consensus 646 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 725 (833)
.....|+..+|..+|+...... +-+...-..++.+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4456788888888888877663 224455667788888888888888888877654211122223334566666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhcCCCHHHH
Q 003295 726 AESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGI-SPDSITYNVFMDGHCKGGNVEEA 796 (833)
Q Consensus 726 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g~~~~A 796 (833)
...+-.+.-.. +.|...-..+...+...|+.++|.+.+-.++.+.. .-|...-..|+..+.-.|.-+.+
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 66666666542 34677777888888889999999888887776432 12445566666666666643333
No 239
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.95 E-value=0.43 Score=46.67 Aligned_cols=87 Identities=14% Similarity=0.135 Sum_probs=54.9
Q ss_pred hccCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCC--C-CHHHHHHHHHHHHhcCChh
Q 003295 195 KNLGFGYAIDVFSIFSSKGIF--PSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVS--P-DVFLFSTAINAFCKRGRIE 269 (833)
Q Consensus 195 ~~~~~~~A~~~f~~~~~~~~~--p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~ 269 (833)
+.|++..|.+.|...++..+. -...++-+|..++...|++++|..+|..+.++.| | -..++..+..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 466777777777776665432 1233555677777777777777777777763222 2 2355666666777777777
Q ss_pred HHHHHHHHHHHc
Q 003295 270 DAIGLFTKMEEL 281 (833)
Q Consensus 270 ~A~~~~~~m~~~ 281 (833)
+|...|+++.+.
T Consensus 233 ~A~atl~qv~k~ 244 (262)
T COG1729 233 EACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH
Confidence 777777777665
No 240
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.95 E-value=3.9 Score=39.78 Aligned_cols=221 Identities=20% Similarity=0.129 Sum_probs=131.0
Q ss_pred ChhhHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHhhHHHHHHHHHccCCHHHHHHH
Q 003295 547 KPEEGFKLKEDMIKRGIQ-PDNYTYNLLLHGLCSLGKMEEAIELWEECKRT-VFGPDIYTYGVMIDGFCKADKIEEGETL 624 (833)
Q Consensus 547 ~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~ 624 (833)
....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334444444444433221 12345555555666666666666666655432 1223344455555556666666677777
Q ss_pred HHHHHHCCCccCHHHHHHHHH-HHHHcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003295 625 FNEMISKKMELNPVVYNTLIR-AYCKIGNTTAAFRLSNDMKSRGI--LPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKE 701 (833)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 701 (833)
+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.++|...+.+....
T Consensus 118 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 118 LEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 76666543332 122222222 56777788888887777755221 122333444444466778888888888888875
Q ss_pred CCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003295 702 GLLP-NVACYTALIGGYCKLGQMDEAESVLQEMASINIHPN-KITYTIMIGGYCKLGDMKEAAKLLNVMAEK 771 (833)
Q Consensus 702 g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 771 (833)
. .. ....+..+...+...++.++|...+...... .|+ ...+..+...+...|..+++...+.+....
T Consensus 197 ~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 197 N-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred C-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 22 3566777777888888888888888888874 333 445555555555677788888888888773
No 241
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.79 E-value=1 Score=49.65 Aligned_cols=118 Identities=18% Similarity=0.120 Sum_probs=73.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhHHHHH-HHHHHhcCChhHHHHHHHHHHhC--CC-CCCHHHHHHHHHHHHhcCCHHH
Q 003295 685 IGLIEDAKCLFDEMRKEGLLPNVACYTAL-IGGYCKLGQMDEAESVLQEMASI--NI-HPNKITYTIMIGGYCKLGDMKE 760 (833)
Q Consensus 685 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~--g~-~p~~~~~~~li~~~~~~g~~~~ 760 (833)
....+.|.++++.+.+. -|+...|... ...+...|++++|++.|++.... .. +.....+.-+.+.+.-.+++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 44567788888888775 4666555443 34555678888888888865531 11 1223456677777888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH-HhcCCCH-------HHHHHHHHHHHH
Q 003295 761 AAKLLNVMAEKGISPDSITYNVFMDG-HCKGGNV-------EEAFKVCDRMLS 805 (833)
Q Consensus 761 A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~-------~~A~~~~~~m~~ 805 (833)
|.+.|.++.+.. .-+..+|..+..+ +...|+. ++|.++|.+...
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888888887742 2233444433333 3445666 777777776644
No 242
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.72 E-value=0.51 Score=40.08 Aligned_cols=91 Identities=18% Similarity=0.127 Sum_probs=55.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCC
Q 003295 681 GLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNK---ITYTIMIGGYCKLGD 757 (833)
Q Consensus 681 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~ 757 (833)
++...|+++.|++.|.+.+.. .+-....||.-..++.-.|+.++|+.-+++..+..-.-.. ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 455667777777777776664 2335566777777777777777777777776653211111 233344445666677
Q ss_pred HHHHHHHHHHHHHcC
Q 003295 758 MKEAAKLLNVMAEKG 772 (833)
Q Consensus 758 ~~~A~~~~~~m~~~g 772 (833)
-+.|..-|+.+.+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777666655
No 243
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.62 E-value=0.46 Score=41.29 Aligned_cols=83 Identities=16% Similarity=0.219 Sum_probs=52.2
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 706 NVACYTALIGGYCKLGQMDEAESVLQEMASI---------------NIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 706 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
|..++..++.++++.|+++....++++.=.- ...|+..+..+++.+|+..|++..|.++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4567888888999999998888888765311 1235555666666666666666666666666554
Q ss_pred -cCCCCCHHHHHHHHHHHh
Q 003295 771 -KGISPDSITYNVFMDGHC 788 (833)
Q Consensus 771 -~g~~p~~~~~~~l~~~~~ 788 (833)
.+++-+..+|..|+.-..
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HcCCCCCHHHHHHHHHHHH
Confidence 344445556665554443
No 244
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.53 E-value=2 Score=38.37 Aligned_cols=84 Identities=13% Similarity=0.105 Sum_probs=41.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 003295 257 TAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLE 336 (833)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g 336 (833)
.++..+.+.+.......+++.+...+. .+...+|.++..|++.+ ..+..+.++. ..+.+.....++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 355555555566666666666555543 35555666666665542 2233333321 123333344555555555
Q ss_pred ChhHHHHHHHHH
Q 003295 337 KFDDANFVLKEM 348 (833)
Q Consensus 337 ~~~~A~~~~~~m 348 (833)
-++++..++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555544
No 245
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.49 E-value=3.7 Score=39.32 Aligned_cols=82 Identities=18% Similarity=0.221 Sum_probs=39.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCh
Q 003295 329 INGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQM 408 (833)
Q Consensus 329 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 408 (833)
..+|....++++|...+.+..+ +.+.|...|. ....++.|.-+..+|... .--+..|+--..+|..+|..
T Consensus 38 AvafRnAk~feKakdcLlkA~~-~yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E~Gsp 107 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASK-GYENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVECGSP 107 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHH-HHHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCc
Confidence 3455555666666665555542 1111211111 122334444455554442 11223445556667777777
Q ss_pred hHHHHHHHHHHH
Q 003295 409 DNAENALEEMLS 420 (833)
Q Consensus 409 ~~A~~~l~~~~~ 420 (833)
+-|-..+++.-+
T Consensus 108 dtAAmaleKAak 119 (308)
T KOG1585|consen 108 DTAAMALEKAAK 119 (308)
T ss_pred chHHHHHHHHHH
Confidence 776666665543
No 246
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.43 E-value=2.9 Score=35.88 Aligned_cols=138 Identities=16% Similarity=0.170 Sum_probs=80.6
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH---HHHHHHHHhcCCh
Q 003295 262 FCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITY---SILINGLIKLEKF 338 (833)
Q Consensus 262 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~---~~li~~~~~~g~~ 338 (833)
+.-.|.+++..++..+.... .+..-||.+|--....-+-+-..++++..-+. -|.... ..++..|++.|.
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~C~NlKrVi~C~~~~n~- 84 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISKCGNLKRVIECYAKRNK- 84 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-S-THHHHHHHHHTT--
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCchhhcchHHHHHHHHHhcc-
Confidence 34467888888888888774 46667777776555554555555555554331 232221 233444444333
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 003295 339 DDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEM 418 (833)
Q Consensus 339 ~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~ 418 (833)
+......-++.+.++|+-|.-.+++.++... -+++....-.+..+|.+.|+..++.+++.++
T Consensus 85 -----------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 85 -----------------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp -------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred -----------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 2223344566777888888888888887642 3567777778888899999999999999888
Q ss_pred HHCCCC
Q 003295 419 LSRGLS 424 (833)
Q Consensus 419 ~~~g~~ 424 (833)
.+.|++
T Consensus 147 CekG~k 152 (161)
T PF09205_consen 147 CEKGLK 152 (161)
T ss_dssp HHTT-H
T ss_pred HHhchH
Confidence 888753
No 247
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.43 E-value=3.1 Score=39.87 Aligned_cols=25 Identities=4% Similarity=0.121 Sum_probs=13.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHH
Q 003295 604 TYGVMIDGFCKADKIEEGETLFNEM 628 (833)
Q Consensus 604 ~~~~li~~~~~~g~~~~A~~~~~~~ 628 (833)
.|+.-..+|..+|..+.|-..+++.
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHH
Confidence 3444455566666666655555544
No 248
>PRK11906 transcriptional regulator; Provisional
Probab=94.40 E-value=2.8 Score=44.58 Aligned_cols=148 Identities=14% Similarity=0.116 Sum_probs=103.5
Q ss_pred CHHHHHHHHHHHHHC-CCccC-HHHHHHHHHHHHHc---------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003295 617 KIEEGETLFNEMISK-KMELN-PVVYNTLIRAYCKI---------GNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNI 685 (833)
Q Consensus 617 ~~~~A~~~~~~~~~~-~~~~~-~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 685 (833)
..+.|..+|.+.... ...|+ ...|..+..++... ....+|.++.++..+.+ +-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 467889999999822 22333 45555555444322 23456788888888876 55888888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHH
Q 003295 686 GLIEDAKCLFDEMRKEGLLPNV-ACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKI---TYTIMIGGYCKLGDMKEA 761 (833)
Q Consensus 686 g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A 761 (833)
|+++.|..+|++.... .||. .+|......+.-.|+.++|.+.+++..+. .|... +....++.|+.. ..++|
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPN-PLKNN 426 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCC-chhhh
Confidence 9999999999999985 5654 56666666677799999999999998764 55543 333344456655 47888
Q ss_pred HHHHHHHHH
Q 003295 762 AKLLNVMAE 770 (833)
Q Consensus 762 ~~~~~~m~~ 770 (833)
++++-+-.+
T Consensus 427 ~~~~~~~~~ 435 (458)
T PRK11906 427 IKLYYKETE 435 (458)
T ss_pred HHHHhhccc
Confidence 887766433
No 249
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.37 E-value=0.25 Score=47.88 Aligned_cols=105 Identities=18% Similarity=0.261 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 003295 249 SPDVFLFSTAINAFCK-----RGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLI 323 (833)
Q Consensus 249 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 323 (833)
..|..+|...+..|.. .+.++--...+..|.+.|++-|..+|+.|++.+-+..-.- ..+|++.--
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP--~nvfQ~~F~-------- 133 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP--QNVFQKVFL-------- 133 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc--HHHHHHHHh--------
Confidence 4455556555555543 3455556666777888888888888888887664321100 011111100
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 003295 324 TYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGN 372 (833)
Q Consensus 324 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~ 372 (833)
.|= .+-+-++.++++|...|+.||-.+-..|++++.+.+-
T Consensus 134 -------HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 -------HYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred -------hCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 010 1122355566666666666666666666666655543
No 250
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.34 E-value=6.8 Score=39.85 Aligned_cols=62 Identities=18% Similarity=0.123 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003295 359 VYNTLIDGYCKKGNI---SEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSR 421 (833)
Q Consensus 359 ~y~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~ 421 (833)
+...|+.+|...+.. ++|..+++.+...... ....+..-+..+.+.++.+++.+.+.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 445566666655543 3455555555443222 2333434455555567777777777777654
No 251
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.29 E-value=12 Score=42.41 Aligned_cols=179 Identities=14% Similarity=0.031 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHH--HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003295 617 KIEEGETLFNEMISKKMELNPVVYNTLIRAYC--KIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCL 694 (833)
Q Consensus 617 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 694 (833)
+...|.++|......|.. ....+..++.... -..+...|+.++++..+.| .|...--...+..+.. +..+.+.-.
T Consensus 343 d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~ 419 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALAL 419 (552)
T ss_pred cHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHH
Confidence 455666666666655532 1111111111111 2235566677777666665 2221111222223333 555555555
Q ss_pred HHHHHHCCCCCChhHHHHHHHHH---Hh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHH
Q 003295 695 FDEMRKEGLLPNVACYTALIGGY---CK----LGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKL----GDMKEAAK 763 (833)
Q Consensus 695 ~~~m~~~g~~p~~~~~~~li~~~---~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~ 763 (833)
+..+.+.|.+--...-..+.... .. ..+.+.+...+.+....| +......+.+.|..- .+++.|..
T Consensus 420 ~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~ 496 (552)
T KOG1550|consen 420 YLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAA 496 (552)
T ss_pred HHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHH
Confidence 55555443221111111111111 00 124556666666666544 455555565555443 34777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHC
Q 003295 764 LLNVMAEKGISPDSITYNVFMDGHCK----GGNVEEAFKVCDRMLSE 806 (833)
Q Consensus 764 ~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~ 806 (833)
.+....+++ ....-.+...+.. .. +..|.++++...+.
T Consensus 497 ~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 497 QYARASEQG----AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHhh----hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhc
Confidence 777777654 3333334433321 23 67788887777663
No 252
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.21 E-value=1.3 Score=38.96 Aligned_cols=79 Identities=16% Similarity=0.171 Sum_probs=57.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 003295 222 NFLLNSLVKANEVQKGIEVFETMCRGVSP---DVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLC 298 (833)
Q Consensus 222 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 298 (833)
-.-.....+.|++++|.+.|+.+....|- ...+-..++.+|.+.|++++|...+++.++..+....+-|-..+.|++
T Consensus 14 y~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 14 YQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 33344456778899999999888743333 345566788889999999999999999988766555566777777765
Q ss_pred hc
Q 003295 299 RN 300 (833)
Q Consensus 299 ~~ 300 (833)
.-
T Consensus 94 ~~ 95 (142)
T PF13512_consen 94 YY 95 (142)
T ss_pred HH
Confidence 43
No 253
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.07 E-value=11 Score=44.84 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhcC--CHHHHHHHHHHHhh
Q 003295 498 VTSNALIHGMCEAG--NLKEAGKLLMEMLQ 525 (833)
Q Consensus 498 ~~~~~li~~~~~~g--~~~~A~~~l~~m~~ 525 (833)
.-...++..|.+.+ .+++|+....+...
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 33445666666666 56666666665554
No 254
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.86 Score=47.06 Aligned_cols=96 Identities=17% Similarity=0.088 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003295 673 VTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGY 752 (833)
Q Consensus 673 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 752 (833)
..++.+.-++.+.+++.+|++.-.+.+..+ ++|+....--..+|...|+++.|+..|+++++.. +-|..+-+.++..-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 356677788889999999999999998875 5677777778889999999999999999999853 44445555555555
Q ss_pred HhcCCHHH-HHHHHHHHHH
Q 003295 753 CKLGDMKE-AAKLLNVMAE 770 (833)
Q Consensus 753 ~~~g~~~~-A~~~~~~m~~ 770 (833)
.+...+.+ ..++|..|..
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 44444443 4677777765
No 255
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.02 E-value=3.4 Score=36.87 Aligned_cols=43 Identities=23% Similarity=0.318 Sum_probs=22.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHc
Q 003295 607 VMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKI 650 (833)
Q Consensus 607 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 650 (833)
.++..+...+........++.+...+. .++...+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 344444445555555555555555543 3555555555555544
No 256
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.94 E-value=1 Score=39.11 Aligned_cols=48 Identities=21% Similarity=0.226 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhHHHHHHH
Q 003295 668 ILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKE-GLLPNVACYTALIG 715 (833)
Q Consensus 668 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~ 715 (833)
..|+..+..+++.+|+..|++..|+++.+...+. +++-+...|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3445555555555555555555555555554443 44444444544443
No 257
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.92 E-value=3.2 Score=35.62 Aligned_cols=67 Identities=16% Similarity=0.135 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC
Q 003295 742 KITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLS 809 (833)
Q Consensus 742 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 809 (833)
....+..+..+..+|+-+.-.++++++... -.+++.....+..+|.+.|+..++.+++.++-++|++
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 344556667778888888888888887653 3678888888888999999988998888888888775
No 258
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.88 E-value=6.9 Score=38.18 Aligned_cols=180 Identities=16% Similarity=0.139 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhc---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 003295 218 LKTCNFLLNSLVKANEVQKGIEVFETMCR---GVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNII 294 (833)
Q Consensus 218 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 294 (833)
..-|+..+. ..+.|++++|.+.|+.+.+ +.+-...+-..++-++.+.+++++|+..+++....-+.....-|-..+
T Consensus 35 ~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 334444444 4477899999999999883 233345667777888889999999999999988765544455676667
Q ss_pred HHHHhc-------CChh---HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHH
Q 003295 295 HGLCRN-------GRLY---EAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLI 364 (833)
Q Consensus 295 ~~~~~~-------g~~~---~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li 364 (833)
.+++.- .+.. +|+.-|++.+.+ -||.. =..+|.......... =...=..+.
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS~-------------Ya~dA~~~i~~~~d~----LA~~Em~Ia 174 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNSR-------------YAPDAKARIVKLNDA----LAGHEMAIA 174 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCCc-------------chhhHHHHHHHHHHH----HHHHHHHHH
Confidence 666632 1222 233333333332 12211 001111111111100 000012345
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCChh---HHHHHHHHHHhcCChhHHHHHHHHH
Q 003295 365 DGYCKKGNISEALKIRDDMVSKGMSPNSV---TFNSLIHGFCKSGQMDNAENALEEM 418 (833)
Q Consensus 365 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~~l~~~ 418 (833)
..|.+.|.+..|..-+++|++. .+-... .+-.+..+|.+.|-.++|...-.-+
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 5677777777777777777765 221222 3344555666666666665544433
No 259
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.87 E-value=1.3 Score=44.20 Aligned_cols=155 Identities=12% Similarity=0.056 Sum_probs=112.4
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC-CCccCHHHH--HHHHHHHHHcCChH
Q 003295 578 CSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISK-KMELNPVVY--NTLIRAYCKIGNTT 654 (833)
Q Consensus 578 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~--~~li~~~~~~g~~~ 654 (833)
-..|+..+|...|+++.+. ++.|...+...-+++.-.|+.+.-...+++++.. +....-.+| ..+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3568888888899998875 5678888888888999999999999999888765 222122233 33444566889999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCChhHHHHHHHHHHhcCChhHHHHHHH
Q 003295 655 AAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKE---GLLPNVACYTALIGGYCKLGQMDEAESVLQ 731 (833)
Q Consensus 655 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 731 (833)
+|.+.-++..+.+ +.|.-.-....+.+.-.|+..++.++..+-... +--.-...|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999988876 457777778888888999999999887665432 111112234444445666799999999998
Q ss_pred HHH
Q 003295 732 EMA 734 (833)
Q Consensus 732 ~m~ 734 (833)
+-+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 755
No 260
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.84 E-value=13 Score=41.11 Aligned_cols=118 Identities=22% Similarity=0.152 Sum_probs=77.2
Q ss_pred cCCHHHHHHHHHHHHHCCCccCHHHHHH-HHHHHHHcCChHHHHHHHHHHHhCC--C-CCCHHHHHHHHHHHHhcCCHHH
Q 003295 615 ADKIEEGETLFNEMISKKMELNPVVYNT-LIRAYCKIGNTTAAFRLSNDMKSRG--I-LPTSVTYSSLIHGLCNIGLIED 690 (833)
Q Consensus 615 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~--~-~p~~~~~~~li~~~~~~g~~~~ 690 (833)
....+.|.+++..+.+. -|+...|.. -...+...|++++|++.|++..... . +.....+--+...+.-..++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45677888888888876 345544443 3455667788888888888765321 0 1122334555666778889999
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHH-HHHHhcCCh-------hHHHHHHHHHHh
Q 003295 691 AKCLFDEMRKEGLLPNVACYTALI-GGYCKLGQM-------DEAESVLQEMAS 735 (833)
Q Consensus 691 A~~~~~~m~~~g~~p~~~~~~~li-~~~~~~g~~-------~~A~~~~~~m~~ 735 (833)
|.+.|.++.+.. .....+|..+. .++...|+. ++|.++|.+...
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999998863 34455554443 334557777 788888887653
No 261
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.82 E-value=8.6 Score=39.12 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=10.4
Q ss_pred HhcCCCHHHHHHHHHHH
Q 003295 787 HCKGGNVEEAFKVCDRM 803 (833)
Q Consensus 787 ~~~~g~~~~A~~~~~~m 803 (833)
+.+.+++++|.++|+-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 44566666666666643
No 262
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.80 E-value=1 Score=44.15 Aligned_cols=96 Identities=17% Similarity=0.156 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC-hhhHHHHH
Q 003295 220 TCNFLLNSLVKANEVQKGIEVFETMCRGVSPDV---FLFSTAINAFCKRGRIEDAIGLFTKMEELGIA-PN-VVTYNNII 294 (833)
Q Consensus 220 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-~~~~~~li 294 (833)
.|+.-+.. .+.|++..|...|...+++.|.+. .++.-|..++..+|++++|...|..+.+.-+. |- +..+-.|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 46665554 466778888888888774443332 23444778888888888888888887765221 11 24556666
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 003295 295 HGLCRNGRLYEAFHLKEKMVLR 316 (833)
Q Consensus 295 ~~~~~~g~~~~A~~~~~~m~~~ 316 (833)
....+.|+.++|...|++..++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6677777778888877777765
No 263
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.78 E-value=5 Score=36.28 Aligned_cols=129 Identities=12% Similarity=0.062 Sum_probs=64.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhH-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCH
Q 003295 683 CNIGLIEDAKCLFDEMRKEGLLPNVAC-YTALIGGYCKLGQMDEAESVLQEMASINIHPNKI---TYTIMIGGYCKLGDM 758 (833)
Q Consensus 683 ~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~ 758 (833)
.+.+..++|+.-|..+.+.|...-++. ..-........|+...|...|.++-...-.|-.. .-.--...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 344555666666666655542221111 1112233445566666666666665432222221 011112334556666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC
Q 003295 759 KEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSLD 811 (833)
Q Consensus 759 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 811 (833)
++.....+-+...+-+-....-..|.-+-.+.|++.+|.++|..+.+....|.
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 66666555554433222334455666666677777777777777666544554
No 264
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.74 E-value=7.3 Score=38.01 Aligned_cols=73 Identities=21% Similarity=0.218 Sum_probs=42.9
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003295 506 GMCEAGNLKEAGKLLMEMLQRGLI--LDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLC 578 (833)
Q Consensus 506 ~~~~~g~~~~A~~~l~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 578 (833)
.-.+.|++++|.+.|+.+..+.+- -...+.-.++.++.+.+++++|+...++.++.-+.....-|...|.+++
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 345667777777777777755322 1234444556666677777777777777776644333334444444444
No 265
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.62 E-value=1.7 Score=47.17 Aligned_cols=131 Identities=20% Similarity=0.234 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 003295 637 PVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGG 716 (833)
Q Consensus 637 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 716 (833)
....+.++.-+.+.|.++.|+++.++-.. -.....+.|+++.|.++.++ .++...|..|.+.
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKE------LDDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHH
Confidence 34456666666666666666655433211 12233456666666654321 2355566667666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHH
Q 003295 717 YCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEA 796 (833)
Q Consensus 717 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 796 (833)
..+.|+++-|++.|++..+ |..|.-.|.-.|+.+.-.++.+.+...| -++.-..++.-.|+.++.
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHH
Confidence 6667777777666666442 3445555666666666666665555544 133333334444555555
Q ss_pred HHHH
Q 003295 797 FKVC 800 (833)
Q Consensus 797 ~~~~ 800 (833)
.+++
T Consensus 422 v~lL 425 (443)
T PF04053_consen 422 VDLL 425 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 266
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.52 E-value=4.9 Score=42.92 Aligned_cols=59 Identities=20% Similarity=0.264 Sum_probs=33.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003295 677 SLIHGLCNIGLIEDAKCLFDEMRKEG-LLPNVACYTALIGGYCKLGQMDEAESVLQEMAS 735 (833)
Q Consensus 677 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 735 (833)
.+..++-+.|+.++|.+.+.+|.+.. ...+..+...|+.++...+.+.++..++.+-.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34445556666666666666666532 111223445566666666666666666666543
No 267
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.25 E-value=1 Score=44.86 Aligned_cols=79 Identities=15% Similarity=0.249 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 003295 707 VACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAE-----KGISPDSITYN 781 (833)
Q Consensus 707 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 781 (833)
..++..++..+...|+.+.+.+.++++.+.. +-|...|..++.+|.+.|+...|+..++++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3455556666666666666666666666653 44566666666666666666666666666543 45556555555
Q ss_pred HHHHH
Q 003295 782 VFMDG 786 (833)
Q Consensus 782 ~l~~~ 786 (833)
.+...
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44444
No 268
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.16 E-value=1.3 Score=47.95 Aligned_cols=101 Identities=22% Similarity=0.198 Sum_probs=69.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhh
Q 003295 471 GLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEE 550 (833)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 550 (833)
...+.|+++.|.++.++ ..+...|..|.+...++|+++-|.+.|.+..+ |..|+-.|.-.|+.+.
T Consensus 327 LAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~ 391 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREK 391 (443)
T ss_dssp HHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHH
T ss_pred HHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHH
Confidence 44567777777776433 23677899999999999999999988887653 4566667777888887
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003295 551 GFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEE 592 (833)
Q Consensus 551 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 592 (833)
-.++.+.....|- ++....++.-.|+.++..+++.+
T Consensus 392 L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 392 LSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777776642 45555566666888777777654
No 269
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.01 E-value=7.1 Score=41.77 Aligned_cols=78 Identities=21% Similarity=0.172 Sum_probs=56.5
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHH
Q 003295 706 NVACYTALIGGYCKLGQMDEAESVLQEMASIN-IHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDS--ITYNV 782 (833)
Q Consensus 706 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ 782 (833)
-..+-..+..++.+.|+.++|.+.+++|.+.. ...+......|+.++...+.+.++..++.+-.+.. -|.. ..|+.
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~YTa 336 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICYTA 336 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHHHH
Confidence 34444557778889999999999999998642 11234577889999999999999999999865432 2333 45555
Q ss_pred HH
Q 003295 783 FM 784 (833)
Q Consensus 783 l~ 784 (833)
.+
T Consensus 337 AL 338 (539)
T PF04184_consen 337 AL 338 (539)
T ss_pred HH
Confidence 43
No 270
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.94 E-value=7.3 Score=44.10 Aligned_cols=45 Identities=11% Similarity=0.196 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhCCCCCCHhhHHHH----HHH-HHccCCHHHHHHHHHHHHH
Q 003295 583 MEEAIELWEECKRTVFGPDIYTYGVM----IDG-FCKADKIEEGETLFNEMIS 630 (833)
Q Consensus 583 ~~~A~~~~~~~~~~~~~~~~~~~~~l----i~~-~~~~g~~~~A~~~~~~~~~ 630 (833)
...|.++++...+.|. ...-..+ ..+ +....+.+.|+..|..+.+
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 4556666666666542 2221111 122 3345566666666666654
No 271
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.45 E-value=0.96 Score=44.01 Aligned_cols=71 Identities=14% Similarity=0.184 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 003295 652 NTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNI----------------GLIEDAKCLFDEMRKEGLLPNVACYTALIG 715 (833)
Q Consensus 652 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 715 (833)
.++--...++.|.+.|+.-|..+|+.|++.+-+. ..-+=+++++++|...|+.||..+-..|++
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn 166 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN 166 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 3344444445555555555555555555443221 112347888999999999999999889999
Q ss_pred HHHhcCC
Q 003295 716 GYCKLGQ 722 (833)
Q Consensus 716 ~~~~~g~ 722 (833)
++.+.+-
T Consensus 167 ~FGr~~~ 173 (406)
T KOG3941|consen 167 AFGRWNF 173 (406)
T ss_pred Hhccccc
Confidence 8887664
No 272
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.26 E-value=5.6 Score=40.43 Aligned_cols=229 Identities=11% Similarity=0.055 Sum_probs=116.8
Q ss_pred HHhcCChhhHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CC---CCHhhHHHHHHHHHc
Q 003295 542 CCKDGKPEEGFKLKEDMIKRG--IQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTV--FG---PDIYTYGVMIDGFCK 614 (833)
Q Consensus 542 ~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~---~~~~~~~~li~~~~~ 614 (833)
+....+.++|+..+.+.+..- ...-..++..+..+.++.|.+++++..--.-+..- .. .-...|..+..++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777666541 11123456666777777777777655322111100 00 112234444444444
Q ss_pred cCCHHHHHHHHHHHHHC-CCcc---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhc
Q 003295 615 ADKIEEGETLFNEMISK-KMEL---NPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGI-----LPTSVTYSSLIHGLCNI 685 (833)
Q Consensus 615 ~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~p~~~~~~~li~~~~~~ 685 (833)
-.++.+++.+-..-... |..| .-....++..++...+.++++++.|+...+... -.....+..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 44444444443333322 1111 112333455666666677777777776654311 11224566777777777
Q ss_pred CCHHHHHHHHHHHHHC----CCCCChhHH-----HHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHH----HHHHHHHH
Q 003295 686 GLIEDAKCLFDEMRKE----GLLPNVACY-----TALIGGYCKLGQMDEAESVLQEMASINI-HPNKI----TYTIMIGG 751 (833)
Q Consensus 686 g~~~~A~~~~~~m~~~----g~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----~~~~li~~ 751 (833)
.++++|.-+..++.+- ++..-..-| ..+.-++...|.+.+|.+.-++..+..+ ..|.. ....+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 7777777666655431 222111122 2233455566777777776666543110 11332 33456666
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 003295 752 YCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 752 ~~~~g~~~~A~~~~~~m~~ 770 (833)
|...|+.+.|..-++.+..
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 7777777777776666554
No 273
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.07 E-value=24 Score=39.65 Aligned_cols=255 Identities=14% Similarity=0.132 Sum_probs=126.0
Q ss_pred HHhcCChhhHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCC
Q 003295 542 CCKDGKPEEGFKLKEDMIKRGIQPDNYTY----NLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADK 617 (833)
Q Consensus 542 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 617 (833)
....|+..+|.+++.-.+-..-.+ ...| ..+.-++...|..+...+++.+..+..-.+....-..|.-++...|.
T Consensus 367 vIH~G~~~~~~~ll~pYLP~~~~~-~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGS 445 (929)
T KOG2062|consen 367 VIHRGHENQAMKLLAPYLPKEAGE-GSGYKEGGALYALGLIHANHGRGITDYLLQQLKTAENEVVRHGACLGLGLAGMGS 445 (929)
T ss_pred eeeccccchHHHHhhhhCCccCCC-CCCccccchhhhhhccccCcCccHHHHHHHHHHhccchhhhhhhhhhccchhccc
Confidence 345677778888777665431111 1111 11222333444444566666665554322222222333334444443
Q ss_pred HHHHHHHHHHHHHCCCccCHHHHH--HHHHHHHHcCChHHHHHHHHHHHhCCC-CCCHHHH--HHHHHHHHhcCCHHHHH
Q 003295 618 IEEGETLFNEMISKKMELNPVVYN--TLIRAYCKIGNTTAAFRLSNDMKSRGI-LPTSVTY--SSLIHGLCNIGLIEDAK 692 (833)
Q Consensus 618 ~~~A~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~--~~li~~~~~~g~~~~A~ 692 (833)
-+ .++++++.+.-..-+.++-. .+.-+++..|... .+.+++|..... .-...+. ..+.-++..-|+.++|.
T Consensus 446 a~--~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~--~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad 521 (929)
T KOG2062|consen 446 AN--EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN--QEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDAD 521 (929)
T ss_pred cc--HHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc--HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhH
Confidence 22 33444443322221222221 2223344444332 123333332210 0011111 12233455667788888
Q ss_pred HHHHHHHHCCCCCChh--HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 693 CLFDEMRKEGLLPNVA--CYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 693 ~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
.+.++|.... .|-.. -..++..+|+-.|+.....+++.-.++. ...|+.-+-...-++.-..+.+....+.+-+.+
T Consensus 522 ~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~~~~s~V~lLse 599 (929)
T KOG2062|consen 522 PLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSE 599 (929)
T ss_pred HHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChhhchHHHHHHhh
Confidence 8888888653 23211 1123556778888877777776665543 244454555555556666777777777766655
Q ss_pred cCCCCCH--HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 771 KGISPDS--ITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 771 ~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
. ..|.. .+-.+|+-+|.-.|+ .+|+.+++.|..
T Consensus 600 s-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 600 S-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred h-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 3 45544 234456666666666 578888888776
No 274
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.66 E-value=0.58 Score=31.83 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 745 YTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 745 ~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
|..+...|...|++++|++.++++++
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444555555555555555555554
No 275
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.56 E-value=0.46 Score=32.33 Aligned_cols=36 Identities=6% Similarity=-0.064 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHH
Q 003295 221 CNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFS 256 (833)
Q Consensus 221 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 256 (833)
|..+..+|.+.|++++|+++|+++++-.|.|...+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~ 39 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 344444555555555555555555533344444443
No 276
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.11 E-value=12 Score=34.27 Aligned_cols=32 Identities=13% Similarity=0.234 Sum_probs=17.0
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHhcCChh
Q 003295 378 KIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMD 409 (833)
Q Consensus 378 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 409 (833)
++++.+.+.|+.|+...|..+|+.+.+.|++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 44444445555555555555555555555543
No 277
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.06 E-value=14 Score=34.90 Aligned_cols=28 Identities=18% Similarity=0.104 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 778 ITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 778 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
.||-.|+.-+...|+.++|..+|+-.+.
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3555556666666666666666655554
No 278
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.88 E-value=7.6 Score=34.29 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=22.8
Q ss_pred HcCChHHHHHHHHHHHhCCCCC--ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003295 369 KKGNISEALKIRDDMVSKGMSP--NSVTFNSLIHGFCKSGQMDNAENALEEMLSRG 422 (833)
Q Consensus 369 ~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g 422 (833)
+.|++++|.+.|+.+..+-+.. .......|+.+|.+.|++++|...+++.++..
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 4444444444444444431110 11223334444444455555554444444443
No 279
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.49 E-value=16 Score=34.56 Aligned_cols=158 Identities=13% Similarity=0.049 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh--hhHHHHHH
Q 003295 218 LKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNV--VTYNNIIH 295 (833)
Q Consensus 218 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~ 295 (833)
+.++|.|.--+...|+++.|.+.|+...+-.|...++...-.-++.-.|++.-|.+-|.+.-+.... |+ ..|--++.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~-DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPN-DPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence 5677888777888888888888888887544555555544444555678888888877777665322 22 22222221
Q ss_pred HHHhcCChhHHHHHHH-HHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-------hhhHHHHHHHH
Q 003295 296 GLCRNGRLYEAFHLKE-KMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPN-------YVVYNTLIDGY 367 (833)
Q Consensus 296 ~~~~~g~~~~A~~~~~-~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~~y~~li~~~ 367 (833)
+.-+..+|..-+. +... .|..-|...|-.|.- |++.+ ..+++.+..- -..+ ..||--|...|
T Consensus 178 ---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS~-e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKISE-ETLMERLKAD-ATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred ---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhccH-HHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHH
Confidence 2335566654433 3332 244455554444432 22211 1223333221 1111 33566677777
Q ss_pred HHcCChHHHHHHHHHHHhC
Q 003295 368 CKKGNISEALKIRDDMVSK 386 (833)
Q Consensus 368 ~~~g~~~~A~~~~~~m~~~ 386 (833)
...|+.++|..+|.-.+..
T Consensus 248 l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 248 LSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hccccHHHHHHHHHHHHHH
Confidence 7788888888888777664
No 280
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.45 E-value=40 Score=39.09 Aligned_cols=52 Identities=21% Similarity=0.147 Sum_probs=31.0
Q ss_pred ccCCHHHHHHHHHHHHHC----CCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003295 614 KADKIEEGETLFNEMISK----KMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKS 665 (833)
Q Consensus 614 ~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 665 (833)
..|++++|.++.+..... ...+..+.+..+..+..-.|++++|..+..+..+
T Consensus 470 ~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 470 NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 356667776666655543 2223445566666666667777777766665544
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.45 E-value=0.54 Score=30.29 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 779 TYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 779 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
+|..|+..|.+.|++++|++++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 366777788888888888888877543
No 282
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.27 E-value=3 Score=41.64 Aligned_cols=78 Identities=13% Similarity=0.164 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHHHHH
Q 003295 672 SVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMAS-----INIHPNKITYT 746 (833)
Q Consensus 672 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 746 (833)
..++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4456666677777777777777777777753 33667777777777777777777777776654 56666665554
Q ss_pred HHHH
Q 003295 747 IMIG 750 (833)
Q Consensus 747 ~li~ 750 (833)
....
T Consensus 232 ~y~~ 235 (280)
T COG3629 232 LYEE 235 (280)
T ss_pred HHHH
Confidence 4443
No 283
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.25 E-value=40 Score=38.85 Aligned_cols=182 Identities=13% Similarity=0.127 Sum_probs=106.7
Q ss_pred HHHHHHHHHh-CCCCC--CHHHHHHHHHHHH-hcCChhHHHHHHHHhhc-CCCCCH-----HHHHHHHHHHHhcCChhHH
Q 003295 202 AIDVFSIFSS-KGIFP--SLKTCNFLLNSLV-KANEVQKGIEVFETMCR-GVSPDV-----FLFSTAINAFCKRGRIEDA 271 (833)
Q Consensus 202 A~~~f~~~~~-~~~~p--~~~~~~~ll~~~~-~~g~~~~A~~~~~~~~~-~~~~~~-----~~~~~li~~~~~~g~~~~A 271 (833)
|+++++.+.+ ..+.| ...++..+...|. ...++++|+..+.+... ...++. ..-..++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 6666666653 33333 3456677788777 57889999999998861 111222 22345677777777766 8
Q ss_pred HHHHHHHHHc----CCCCChhhHHHH-HHHHHhcCChhHHHHHHHHHHhCC---CCCChhhHHHHHHHHH--hcCChhHH
Q 003295 272 IGLFTKMEEL----GIAPNVVTYNNI-IHGLCRNGRLYEAFHLKEKMVLRE---VEPSLITYSILINGLI--KLEKFDDA 341 (833)
Q Consensus 272 ~~~~~~m~~~----g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~t~~~li~~~~--~~g~~~~A 341 (833)
....++..+. +..+-...+.-+ +..+...+++..|.+.++.+...- ..|-..++-.++.+.. +.+..+++
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 8888886653 111112233333 222323479999999988877532 2334444555555543 44556777
Q ss_pred HHHHHHHHHCCC---------CCChhhHHHHHHHHH--HcCChHHHHHHHHHHH
Q 003295 342 NFVLKEMSVRGF---------VPNYVVYNTLIDGYC--KKGNISEALKIRDDMV 384 (833)
Q Consensus 342 ~~~~~~m~~~g~---------~p~~~~y~~li~~~~--~~g~~~~A~~~~~~m~ 384 (833)
.+.++++..... .|-..+|..+++.++ ..|++..+...++++.
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777776633211 234556777777554 6777777766655543
No 284
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.17 E-value=3.2 Score=38.78 Aligned_cols=96 Identities=20% Similarity=0.237 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCH----H
Q 003295 708 ACYTALIGGYCKLGQMDEAESVLQEMASINIHPNK--ITYTIMIGGYCKLGDMKEAAKLLNVMAE---KGISPDS----I 778 (833)
Q Consensus 708 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~----~ 778 (833)
..+..+...|++.|+.++|.+.+.++.+....+.. ..+-.+|+.....|++..+...+.++.. .|-.++. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45667777788888888888888887765444432 3566777777778888887777776654 2211222 2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 779 TYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 779 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
+|..| .+...|++.+|-+.|-....
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHccCc
Confidence 22222 23456788888888766553
No 285
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.88 E-value=32 Score=39.55 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=8.2
Q ss_pred HHhcCChhHHHHHHHH
Q 003295 332 LIKLEKFDDANFVLKE 347 (833)
Q Consensus 332 ~~~~g~~~~A~~~~~~ 347 (833)
+.-.|+++.|.+.+-+
T Consensus 268 LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 268 LLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHTT-HHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHh
Confidence 3345666666665554
No 286
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.70 E-value=42 Score=38.22 Aligned_cols=102 Identities=14% Similarity=0.133 Sum_probs=52.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc
Q 003295 294 IHGLCRNGRLYEAFHLKEKMVLREVEP---SLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKK 370 (833)
Q Consensus 294 i~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~ 370 (833)
|+.+.+.+.++||+..-+.... ..| -...+..+|..+.-.|++++|....-.|... +..-|.--+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 4556666777777766554432 222 2234556666666667777776666666643 444454444444444
Q ss_pred CChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Q 003295 371 GNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCK 404 (833)
Q Consensus 371 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 404 (833)
++... ++.-+.......+...|..++..+..
T Consensus 437 ~~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccch---hhccCCCCCcccCchHHHHHHHHHHH
Confidence 44432 22222222122234456555555554
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.64 E-value=0.76 Score=29.60 Aligned_cols=27 Identities=15% Similarity=0.130 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 744 TYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 744 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
+|..|...|.+.|++++|++++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467888888899999999998888553
No 288
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.28 E-value=3.9 Score=38.15 Aligned_cols=60 Identities=13% Similarity=0.149 Sum_probs=28.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHH
Q 003295 289 TYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSL--ITYSILINGLIKLEKFDDANFVLKEM 348 (833)
Q Consensus 289 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~li~~~~~~g~~~~A~~~~~~m 348 (833)
.+..+.+.|++.|+.++|.+.|.++.+....+.. ..+-.+|....-.+++..+...+.+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3445555555555555555555555543222221 22334444444555555555444444
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.28 E-value=12 Score=33.69 Aligned_cols=108 Identities=18% Similarity=0.224 Sum_probs=52.7
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHH
Q 003295 298 CRNGRLYEAFHLKEKMVLREVEPSLITYSIL-INGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEA 376 (833)
Q Consensus 298 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A 376 (833)
.+.++.+++..+++.+... .|.......+ ...+.+.|++.+|..+|+++...+ |....-..|+..|....+-..=
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCChHH
Confidence 3556777777777777653 4443332221 223456777777777777776552 3332233333333332222222
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHH
Q 003295 377 LKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAE 412 (833)
Q Consensus 377 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 412 (833)
...-+++.+.+..|+.. .+++.+....+...|.
T Consensus 97 r~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 97 RRYADEVLESGADPDAR---ALVRALLARADLEPAH 129 (160)
T ss_pred HHHHHHHHhcCCChHHH---HHHHHHHHhccccchh
Confidence 33334455554444433 2444444444444443
No 290
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.05 E-value=29 Score=35.51 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHCCCccCHHHHHH
Q 003295 620 EGETLFNEMISKKMELNPVVYNT 642 (833)
Q Consensus 620 ~A~~~~~~~~~~~~~~~~~~~~~ 642 (833)
.+.++++.+.+.|+++....|..
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHcCCccccccccH
Confidence 45555555555555554444443
No 291
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=88.69 E-value=38 Score=36.44 Aligned_cols=238 Identities=10% Similarity=0.101 Sum_probs=128.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHhhCC-CC-CCHhhHHHHHHHHHccCCHHH-HHH
Q 003295 553 KLKEDMIKRGIQPDNYTYNLLLHGLCSL------GKMEEAIELWEECKRTV-FG-PDIYTYGVMIDGFCKADKIEE-GET 623 (833)
Q Consensus 553 ~~~~~m~~~g~~p~~~~~~~li~~~~~~------g~~~~A~~~~~~~~~~~-~~-~~~~~~~~li~~~~~~g~~~~-A~~ 623 (833)
.+|+...+. -|+...++..|..|... ..+..-..+|+...+.+ .. .....|..+.-.++......+ |..
T Consensus 303 ~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~ 380 (568)
T KOG2396|consen 303 AVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVK 380 (568)
T ss_pred HHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHH
Confidence 455554442 23344444444444322 13344445555544432 22 234556666666666554333 333
Q ss_pred HHHHHHHCCCccCHHHHHHHHHHHHHcC-ChHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHH-H-HHHHHH
Q 003295 624 LFNEMISKKMELNPVVYNTLIRAYCKIG-NTTAA-FRLSNDMKSRGILPTSVTYSSLIHGLCNIGL-IEDA-K-CLFDEM 698 (833)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A-~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A-~-~~~~~m 698 (833)
+..+.. .-+...|..-+....+.. +.+-- .+++......-..+....|++.. .|+ .... . .++...
T Consensus 381 l~~e~f----~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~ 451 (568)
T KOG2396|consen 381 LTTELF----RDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISAL 451 (568)
T ss_pred hhHHHh----cchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHH
Confidence 333333 336666666555554331 22211 12222333222222333333332 222 2221 1 122223
Q ss_pred HHCCCCCChhHH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHH-cCCC
Q 003295 699 RKEGLLPNVACY-TALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGY--CKLGDMKEAAKLLNVMAE-KGIS 774 (833)
Q Consensus 699 ~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~-~g~~ 774 (833)
... ..|+..++ +.+++.+.+.|-.++|...+.++.... +|+...|..+|..= ...-+..-+.++++.|.. .|
T Consensus 452 ~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg-- 527 (568)
T KOG2396|consen 452 LSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG-- 527 (568)
T ss_pred HHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--
Confidence 333 24665554 567788888999999999999999864 66777777776542 122347788899998876 45
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 775 PDSITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 775 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
.|+..|...+.--...|..+.+-.++.++.+
T Consensus 528 ~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 528 ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 6777787777766788988888888777765
No 292
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.44 E-value=1 Score=28.43 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 744 TYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 744 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
+|..++.+|...|++++|++.++++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344555555555555555555555554
No 293
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.33 E-value=1.1 Score=28.19 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 778 ITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 778 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
.+|..++..|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566666666666666666666666665
No 294
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.32 E-value=20 Score=32.67 Aligned_cols=124 Identities=13% Similarity=0.063 Sum_probs=70.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHH--HHHHhcCCh
Q 003295 473 CKNGKQAEATELCFRLFEKGFTVNTV-TSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKV-TYNTLI--LGCCKDGKP 548 (833)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~-~~~~li--~~~~~~g~~ 548 (833)
.+.++.++|+.-|..+.+.|...-++ ..........+.|+...|...|+++-.-...|... -...|= ..+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 45566666666666666655442222 22233445566777777777777776654444333 111111 223456777
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 003295 549 EEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRT 596 (833)
Q Consensus 549 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 596 (833)
++.....+.+-..+-..-...-..|.-+-.+.|++.+|.+.|..+...
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 777766666655443333444455666667777777777777776653
No 295
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=88.29 E-value=33 Score=35.20 Aligned_cols=225 Identities=12% Similarity=0.056 Sum_probs=107.1
Q ss_pred cCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH----HHhhCCC-CCCHHHHHHHHHHHHhcCC
Q 003295 475 NGKQAEATELCFRLFEKG--FTVNTVTSNALIHGMCEAGNLKEAGKLLM----EMLQRGL-ILDKVTYNTLILGCCKDGK 547 (833)
Q Consensus 475 ~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~l~----~m~~~g~-~~~~~~~~~li~~~~~~g~ 547 (833)
..+.++|+..+.+.+.+- ...-..++..+..+.++.|.+++++..-- -..+..- ..--..|..+..++-+-.+
T Consensus 19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~ 98 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCE 98 (518)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555444444330 01122345556666666666666543211 1111100 0011233334444444444
Q ss_pred hhhHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-----CCHhhHHHHHHHHHccCCH
Q 003295 548 PEEGFKLKEDMIKR-GIQP---DNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFG-----PDIYTYGVMIDGFCKADKI 618 (833)
Q Consensus 548 ~~~A~~~~~~m~~~-g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~ 618 (833)
+.+++.+-..-... |..| .....-++..++...+.++++++.|+...+.... ....++-.|...|.+..++
T Consensus 99 f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~ 178 (518)
T KOG1941|consen 99 FHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDY 178 (518)
T ss_pred hhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhh
Confidence 44444433332221 1111 1123344666777777888888888776543211 1234566777777777777
Q ss_pred HHHHHHHHHHHH----CCCccCHHHH-----HHHHHHHHHcCChHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHh
Q 003295 619 EEGETLFNEMIS----KKMELNPVVY-----NTLIRAYCKIGNTTAAFRLSNDMKS----RGILP-TSVTYSSLIHGLCN 684 (833)
Q Consensus 619 ~~A~~~~~~~~~----~~~~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p-~~~~~~~li~~~~~ 684 (833)
++|.-+..+..+ .++.--..-| -.|.-++...|....|.+.-++..+ .|-.+ -......+.+.|-.
T Consensus 179 ~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~ 258 (518)
T KOG1941|consen 179 EKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS 258 (518)
T ss_pred hHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh
Confidence 777655554432 1222111112 2233455566666666666655433 23111 11223455566667
Q ss_pred cCCHHHHHHHHHHHH
Q 003295 685 IGLIEDAKCLFDEMR 699 (833)
Q Consensus 685 ~g~~~~A~~~~~~m~ 699 (833)
.|+.|.|+.-|+.+.
T Consensus 259 ~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 259 RGDLERAFRRYEQAM 273 (518)
T ss_pred cccHhHHHHHHHHHH
Confidence 777777766666544
No 296
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.29 E-value=52 Score=37.50 Aligned_cols=102 Identities=12% Similarity=0.167 Sum_probs=63.2
Q ss_pred HHHHHhcCChhHHHHHHHHhhcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 003295 225 LNSLVKANEVQKGIEVFETMCRGVSP---DVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNG 301 (833)
Q Consensus 225 l~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 301 (833)
++.+.+.+.+++|+..-+... |..| -...+...|..+...|++++|-...-.|... +..-|-.-+.-+...|
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~-~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI-GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc-CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 455677788888888776654 3333 2345667788888888888888888888752 5566666666666665
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 003295 302 RLYEAFHLKEKMVLREVEPSLITYSILINGLIK 334 (833)
Q Consensus 302 ~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 334 (833)
+......+ +.......+...|..++..+..
T Consensus 438 ~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 55443332 2221111344567777766665
No 297
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.18 E-value=0.61 Score=29.62 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=10.3
Q ss_pred CHHHHHHHHHHHhcCCCHHHH
Q 003295 776 DSITYNVFMDGHCKGGNVEEA 796 (833)
Q Consensus 776 ~~~~~~~l~~~~~~~g~~~~A 796 (833)
|..+|+.|+..|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 344455555555555555444
No 298
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.94 E-value=21 Score=32.65 Aligned_cols=101 Identities=20% Similarity=0.216 Sum_probs=58.4
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003295 273 GLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRG 352 (833)
Q Consensus 273 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 352 (833)
+.+..+.+.|+.|+...|..+|+.+.+.|++..-..++ ..++-+|....-..+-. -.+.+..+.++--.|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs--~~~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLS--LGNQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHH--hHccChHHHHHHHHHHHH-
Confidence 34455556677777777777788777777766544443 33444555443333322 223344555555555543
Q ss_pred CCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 003295 353 FVPNYVVYNTLIDGYCKKGNISEALKIRDDM 383 (833)
Q Consensus 353 ~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 383 (833)
=...+..+++.+...|++-+|.++.+..
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 1113566667777777777777777664
No 299
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.56 E-value=1.3 Score=27.75 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 745 YTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 745 ~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
|..+...+...|++++|++.+++.++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444445555555555555555444
No 300
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.39 E-value=1.2 Score=27.85 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 778 ITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 778 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
..|..++..+...|++++|++.|++.++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4678899999999999999999999987
No 301
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.38 E-value=46 Score=35.89 Aligned_cols=92 Identities=18% Similarity=0.154 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 003295 533 VTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGF 612 (833)
Q Consensus 533 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 612 (833)
....+++..+..+-+..-...+..+|+..|- +-..|..++.+|... .-++-..+|+++.+..+ .|++.-..|...|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~y 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKY 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHH
Confidence 3334444444444444444444444444321 333444444444444 33344444444444322 1222223333333
Q ss_pred HccCCHHHHHHHHHHHH
Q 003295 613 CKADKIEEGETLFNEMI 629 (833)
Q Consensus 613 ~~~g~~~~A~~~~~~~~ 629 (833)
-+ ++.+.+...|.++.
T Consensus 143 Ek-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 143 EK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HH-hchhhHHHHHHHHH
Confidence 32 44444444444443
No 302
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.03 E-value=64 Score=37.13 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=26.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc
Q 003295 322 LITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKK 370 (833)
Q Consensus 322 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~ 370 (833)
..+| .+|--|.|.|++++|.++..+.... .......+...+..|+..
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 3344 3455567888888888887555432 333445566666666653
No 303
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=86.84 E-value=40 Score=34.55 Aligned_cols=128 Identities=16% Similarity=0.088 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc----C---ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 003295 687 LIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKL----G---QMDEAESVLQEMASINIHPNKITYTIMIGGYCK----L 755 (833)
Q Consensus 687 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~ 755 (833)
+..+|..++.++.+.|..+-......+...|..- + +...|...+.++...+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 5566666666666665333222223333333221 1 2236777777777655 34444444444432 3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC---------------CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003295 756 GDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGG---------------NVEEAFKVCDRMLSEGLSLDEITYTTLID 820 (833)
Q Consensus 756 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 820 (833)
.+.++|...|++..+.|. ......+. .+...| +...|..++......|..........+-.
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 280 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALRALKI 280 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 367777777777777663 33333333 344333 77788888888888777766666554433
Q ss_pred h
Q 003295 821 G 821 (833)
Q Consensus 821 ~ 821 (833)
.
T Consensus 281 ~ 281 (292)
T COG0790 281 G 281 (292)
T ss_pred H
Confidence 3
No 304
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.81 E-value=40 Score=34.53 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH
Q 003295 760 EAAKLLNVMAEKGISPDSITYNVFM 784 (833)
Q Consensus 760 ~A~~~~~~m~~~g~~p~~~~~~~l~ 784 (833)
.+.++++.+.+.|+++....|..++
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHcCCccccccccHHH
Confidence 4555555555555555544444443
No 305
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.46 E-value=0.87 Score=28.89 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=10.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHH
Q 003295 249 SPDVFLFSTAINAFCKRGRIEDA 271 (833)
Q Consensus 249 ~~~~~~~~~li~~~~~~g~~~~A 271 (833)
|.|..+|+.+...|...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 34444444444444444444444
No 306
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.44 E-value=22 Score=32.10 Aligned_cols=108 Identities=18% Similarity=0.128 Sum_probs=54.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhHHHH-HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003295 683 CNIGLIEDAKCLFDEMRKEGLLPNVACYTA-LIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEA 761 (833)
Q Consensus 683 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 761 (833)
.+.++.+++..+++.+.- +.|....... -...+...|++.+|..+|+++.+. .|....-..|+..|....+-..=
T Consensus 21 l~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcCChHH
Confidence 456777888888887776 3454433322 244456778888888888887654 23333333444333333222222
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHH
Q 003295 762 AKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAF 797 (833)
Q Consensus 762 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 797 (833)
..+-+++.+.+- |..+ ..|+..+....+...|.
T Consensus 97 r~~A~evle~~~--d~~a-~~Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 97 RRYADEVLESGA--DPDA-RALVRALLARADLEPAH 129 (160)
T ss_pred HHHHHHHHhcCC--ChHH-HHHHHHHHHhccccchh
Confidence 333444555432 3322 23344444444444443
No 307
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.91 E-value=3.2 Score=41.67 Aligned_cols=94 Identities=17% Similarity=0.129 Sum_probs=60.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003295 678 LIHGLCNIGLIEDAKCLFDEMRKEGLLP-NVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLG 756 (833)
Q Consensus 678 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 756 (833)
-.+-|.++|.+++|+..|...+.. .| |.+++..-..+|.+..++..|+.-....+..+ ..-...|.--+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 356678888888888888887764 45 78888888888888888888877777666532 111223333333334445
Q ss_pred CHHHHHHHHHHHHHcCCCCC
Q 003295 757 DMKEAAKLLNVMAEKGISPD 776 (833)
Q Consensus 757 ~~~~A~~~~~~m~~~g~~p~ 776 (833)
+..+|.+-++..++ +.|+
T Consensus 180 ~~~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA--LEPK 197 (536)
T ss_pred hHHHHHHhHHHHHh--hCcc
Confidence 55666665555555 4565
No 308
>PRK09687 putative lyase; Provisional
Probab=85.87 E-value=43 Score=34.02 Aligned_cols=136 Identities=18% Similarity=0.107 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003295 671 TSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLG-QMDEAESVLQEMASINIHPNKITYTIMI 749 (833)
Q Consensus 671 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li 749 (833)
+..+-...+.++.+.++ ++|...+-.+.+. +|...-...+.++.+.+ ..+.+...+..+.. .+|..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 33344444555555554 3455555555542 33333344444444432 13345555555543 34555555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 003295 750 GGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSLDEITYTTLIDGW 822 (833)
Q Consensus 750 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 822 (833)
.++.+.|+ ..|+..+-+.++.+ + .....+.++...|.. +|...+.++.+. .||...-..-+.+|
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 66666655 45555555555432 2 223455556666663 566666666652 23444333334443
No 309
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.33 E-value=10 Score=35.25 Aligned_cols=89 Identities=17% Similarity=0.148 Sum_probs=54.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-----hhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003295 681 GLCNIGLIEDAKCLFDEMRKEGLLPN-----VACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKL 755 (833)
Q Consensus 681 ~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 755 (833)
-+.+.|++++|..-|.+++.. +++. .+.|..-..++.+.+.++.|+.-..+.++.+ +.......--..+|-+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhh
Confidence 345667777777777777764 2222 2344445556667777777777777777653 22223333334566677
Q ss_pred CCHHHHHHHHHHHHHc
Q 003295 756 GDMKEAAKLLNVMAEK 771 (833)
Q Consensus 756 g~~~~A~~~~~~m~~~ 771 (833)
.++++|++-|+++++.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 7777777777777773
No 310
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=85.12 E-value=83 Score=36.66 Aligned_cols=226 Identities=16% Similarity=0.126 Sum_probs=122.3
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCH-------HHHHHHHHH-HHhcCChhhHHHHHHHHHHCC----CCCCHHHHHHHH
Q 003295 507 MCEAGNLKEAGKLLMEMLQRGLILDK-------VTYNTLILG-CCKDGKPEEGFKLKEDMIKRG----IQPDNYTYNLLL 574 (833)
Q Consensus 507 ~~~~g~~~~A~~~l~~m~~~g~~~~~-------~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~li 574 (833)
.....++++|..++.+....-..|+. ..|+.|-.. ....|++++|.++.+.....= ..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34568899999888887654222221 234433322 234788899998888877652 234556677778
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHH-----HHHHccCCH--HHHHHHHHHHHHCCC--c----cCHHHHH
Q 003295 575 HGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMI-----DGFCKADKI--EEGETLFNEMISKKM--E----LNPVVYN 641 (833)
Q Consensus 575 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-----~~~~~~g~~--~~A~~~~~~~~~~~~--~----~~~~~~~ 641 (833)
.+..-.|++++|..+.++..+..-.-+...+..+. ..+...|+. .+....|........ + +-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 88888899999999888776543233443333322 335556733 333333333322210 1 1123444
Q ss_pred HHHHHHHHc-CChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--Ch--hHHHHHH
Q 003295 642 TLIRAYCKI-GNTTAAFRLSNDMKSRGILPTSVT--YSSLIHGLCNIGLIEDAKCLFDEMRKEGLLP--NV--ACYTALI 714 (833)
Q Consensus 642 ~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~--~~~~~li 714 (833)
.+..++.+. +...+|..-++-.......|-... +..|+......|++++|...++++......+ .+ .+-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 445555442 222233333332222222222222 2356677788999999999999987653222 22 1111222
Q ss_pred HH--HHhcCChhHHHHHHHH
Q 003295 715 GG--YCKLGQMDEAESVLQE 732 (833)
Q Consensus 715 ~~--~~~~g~~~~A~~~~~~ 732 (833)
.. ....|+.++|.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 22 2346788877776665
No 311
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.65 E-value=35 Score=31.92 Aligned_cols=87 Identities=13% Similarity=0.045 Sum_probs=42.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhHHH-----HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003295 680 HGLCNIGLIEDAKCLFDEMRKEGLLPNVACYT-----ALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCK 754 (833)
Q Consensus 680 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 754 (833)
..+...|++++|..-++..+.. |....+. .|.......|.+++|+..++...+.++ .......-.+.+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 3445556666666666555532 1111222 223444455666666666555543321 11222333455555
Q ss_pred cCCHHHHHHHHHHHHHc
Q 003295 755 LGDMKEAAKLLNVMAEK 771 (833)
Q Consensus 755 ~g~~~~A~~~~~~m~~~ 771 (833)
.|+.++|+.-|++.++.
T Consensus 172 kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 172 KGDKQEARAAYEKALES 188 (207)
T ss_pred cCchHHHHHHHHHHHHc
Confidence 66666666666665554
No 312
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.40 E-value=36 Score=31.85 Aligned_cols=128 Identities=15% Similarity=0.131 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHH-----HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH--
Q 003295 673 VTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTA-----LIGGYCKLGQMDEAESVLQEMASINIHPNKITY-- 745 (833)
Q Consensus 673 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-- 745 (833)
..|..++.... .+.. +.....+++... +...+|.. +...+..+|++++|+.-++..... |....+
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~---n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~ 126 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQA---NGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKA 126 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhh---ccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHH
Confidence 34444444443 2223 445555566653 22233333 346677899999999999987753 222222
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC
Q 003295 746 ---TIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSL 810 (833)
Q Consensus 746 ---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 810 (833)
-.|.+.....|.+++|...++...+.++ .......-++.+...|+-++|+.-|+..++.+-.|
T Consensus 127 l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 127 LAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 3466778899999999999998766543 23345667889999999999999999999976333
No 313
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.30 E-value=13 Score=37.14 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=27.3
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 652 NTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRK 700 (833)
Q Consensus 652 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 700 (833)
++++++.++..=++.|+.||..+++.+++.+.+.+++.+|..+...|..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555555555555444
No 314
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.28 E-value=14 Score=40.38 Aligned_cols=44 Identities=23% Similarity=0.113 Sum_probs=24.4
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 003295 334 KLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDM 383 (833)
Q Consensus 334 ~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 383 (833)
+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|...
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 4555555555544432 3445666666666666666666665543
No 315
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.27 E-value=5.2 Score=40.23 Aligned_cols=96 Identities=14% Similarity=0.026 Sum_probs=66.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC
Q 003295 643 LIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQ 722 (833)
Q Consensus 643 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 722 (833)
-.+-|.+.|.+++|+..|....... +-+.+++..-..+|.+..++..|+.--..++..+ ..-...|.--+.+-...|+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 3667899999999999999877652 2388888888899999999888887777666532 1112234433444444567
Q ss_pred hhHHHHHHHHHHhCCCCCCH
Q 003295 723 MDEAESVLQEMASINIHPNK 742 (833)
Q Consensus 723 ~~~A~~~~~~m~~~g~~p~~ 742 (833)
..+|.+-++...+ +.|+.
T Consensus 181 ~~EAKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 181 NMEAKKDCETVLA--LEPKN 198 (536)
T ss_pred HHHHHHhHHHHHh--hCccc
Confidence 7777777777776 46663
No 316
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=84.03 E-value=5.4 Score=36.57 Aligned_cols=111 Identities=19% Similarity=0.221 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc---CC-------hhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcC
Q 003295 688 IEDAKCLFDEMRKEGLLPNVACYTALIGGYCKL---GQ-------MDEAESVLQEMASINIHPNK-ITYTIMIGGYCKLG 756 (833)
Q Consensus 688 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~-------~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g 756 (833)
++.|.+..+.-...+ +.|...++....++... .. +++|..-|++.+. +.|+. .++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 456666666655443 44555555554444332 23 3334444444444 45553 57777777776544
Q ss_pred C-----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC
Q 003295 757 D-----------MKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLS 809 (833)
Q Consensus 757 ~-----------~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 809 (833)
. +++|.+.|+++.+ ..|+..+|..-+ ...++|-++..++.+.+..
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksL------e~~~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSL------EMAAKAPELHMEIHKQGLG 139 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHH------HHHHTHHHHHHHHHHSSS-
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHH------HHHHhhHHHHHHHHHHHhh
Confidence 2 4445555555555 457766666422 3445666666666655443
No 317
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.02 E-value=88 Score=36.08 Aligned_cols=194 Identities=14% Similarity=0.188 Sum_probs=113.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhcC--CCC--CHHHHHHHHHHHH-hcCChhHHHHHHHHHHHcCCCCChh---
Q 003295 217 SLKTCNFLLNSLVKANEVQKGIEVFETMCRG--VSP--DVFLFSTAINAFC-KRGRIEDAIGLFTKMEELGIAPNVV--- 288 (833)
Q Consensus 217 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~--~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~--- 288 (833)
++..|..||.. |++-++-+.+. .+| +..++..+...|. ...++++|+..+++.....-.++..
T Consensus 29 ~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 45556655553 44445555422 233 3456666777776 5688999999999876543222222
Q ss_pred --hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC----CChhhHHHH-HHHHHhcCChhHHHHHHHHHHHCC---CCCChh
Q 003295 289 --TYNNIIHGLCRNGRLYEAFHLKEKMVLREVE----PSLITYSIL-INGLIKLEKFDDANFVLKEMSVRG---FVPNYV 358 (833)
Q Consensus 289 --~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----p~~~t~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~ 358 (833)
....++..+.+.+... |...+++.++.--. +-...+.-+ +..+...++...|.+.++.+...- ..|-..
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 2235667777776655 98888887754211 122223333 222333479999999998886532 223344
Q ss_pred hHHHHHHHHH--HcCChHHHHHHHHHHHhCCC---------CCChhHHHHHHHHHH--hcCChhHHHHHHHHHHH
Q 003295 359 VYNTLIDGYC--KKGNISEALKIRDDMVSKGM---------SPNSVTFNSLIHGFC--KSGQMDNAENALEEMLS 420 (833)
Q Consensus 359 ~y~~li~~~~--~~g~~~~A~~~~~~m~~~g~---------~p~~~~~~~li~~~~--~~g~~~~A~~~l~~~~~ 420 (833)
++..++.+.. +.+..+++.+.++++..... .|...+|..+++.++ ..|+++.+...++++.+
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555433 55667777777777643211 234556777766554 57777788777766653
No 318
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.44 E-value=11 Score=30.76 Aligned_cols=58 Identities=10% Similarity=0.196 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh-c-CCCCCHHHHHHHHH
Q 003295 201 YAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMC-R-GVSPDVFLFSTAIN 260 (833)
Q Consensus 201 ~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~~~li~ 260 (833)
+..+.++.+-..+..|++....+.+.++-|.+++..|.++|+.+. + |...+ .|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~--~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKE--IYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TT--HHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHH--HHHHHHH
Confidence 445555666677888999999999999999999999999999988 2 43333 5555553
No 319
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.19 E-value=13 Score=34.54 Aligned_cols=89 Identities=21% Similarity=0.166 Sum_probs=71.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHh
Q 003295 715 GGYCKLGQMDEAESVLQEMASINIHPN-----KITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISP-DSITYNVFMDGHC 788 (833)
Q Consensus 715 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~ 788 (833)
+-+.+.|++++|..-|.++++. +++. .+.|..-..++.+.+.++.|++--.+.++. .| .......-..+|.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHHHH
Confidence 4567899999999999999875 3443 245667777889999999999999999985 45 3345556677899
Q ss_pred cCCCHHHHHHHHHHHHHC
Q 003295 789 KGGNVEEAFKVCDRMLSE 806 (833)
Q Consensus 789 ~~g~~~~A~~~~~~m~~~ 806 (833)
+..++++|++-|+.+++.
T Consensus 180 k~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILES 197 (271)
T ss_pred hhhhHHHHHHHHHHHHHh
Confidence 999999999999999884
No 320
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=83.12 E-value=66 Score=33.91 Aligned_cols=53 Identities=17% Similarity=0.134 Sum_probs=31.3
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 003295 539 ILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKR 595 (833)
Q Consensus 539 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 595 (833)
..+.-+.|+++...+........ .++...+.++... +.++++++....+.+..
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 45666788888744444443322 2244444444433 77888888887776654
No 321
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.94 E-value=75 Score=34.42 Aligned_cols=180 Identities=13% Similarity=0.099 Sum_probs=117.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHH
Q 003295 494 TVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLL 573 (833)
Q Consensus 494 ~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 573 (833)
+.|....-+++..+..+.+..-...+..+|...|- +...|..++.+|..+ ..++-..+++++.+..+. |++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 34566677888888888888888899999988764 677888899999888 667888899988888665 56555666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCC--C---HhhHHHHHHHHHccCCHHHHHHHHHHHHHC-CCccCHHHHHHHHHHH
Q 003295 574 LHGLCSLGKMEEAIELWEECKRTVFGP--D---IYTYGVMIDGFCKADKIEEGETLFNEMISK-KMELNPVVYNTLIRAY 647 (833)
Q Consensus 574 i~~~~~~g~~~~A~~~~~~~~~~~~~~--~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~ 647 (833)
...|-+ ++.+.+..+|..+...-++. + ...|..+...- ..+.+....+..++.+. |...-.+.+..+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 666665 88888888888876543221 0 12333333211 34455555555555443 3333445555555667
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003295 648 CKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHG 681 (833)
Q Consensus 648 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 681 (833)
....++++|++++....+.. ..|...-..++..
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 77777888888777776654 2244444444433
No 322
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.01 E-value=31 Score=30.74 Aligned_cols=51 Identities=27% Similarity=0.224 Sum_probs=28.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhHH-HHHHHHHHhcCChhHHHHHHHHHHhC
Q 003295 684 NIGLIEDAKCLFDEMRKEGLLPNVACY-TALIGGYCKLGQMDEAESVLQEMASI 736 (833)
Q Consensus 684 ~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~ 736 (833)
..++.+++..+++.|.- +.|+..-. ..-...+...|++++|.++|++..+.
T Consensus 22 ~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 45666667766666665 23433221 11233445666777777777766654
No 323
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=81.67 E-value=83 Score=34.06 Aligned_cols=79 Identities=14% Similarity=-0.015 Sum_probs=44.1
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCChhHHHHHHHHHHh
Q 003295 237 GIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCR-NGRLYEAFHLKEKMVL 315 (833)
Q Consensus 237 A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~ 315 (833)
...+|+.....++.|+..|...+.-+-+.+.+.+...+|.+|....+. ++..|-.-...... .-+++.|+.+|.+..+
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~-~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN-NPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 344555555445567777777776655556677777777777765321 22233222222222 3337777777766665
Q ss_pred C
Q 003295 316 R 316 (833)
Q Consensus 316 ~ 316 (833)
.
T Consensus 169 ~ 169 (568)
T KOG2396|consen 169 F 169 (568)
T ss_pred c
Confidence 4
No 324
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.85 E-value=25 Score=32.42 Aligned_cols=112 Identities=20% Similarity=0.221 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCC-------HHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHhcC
Q 003295 653 TTAAFRLSNDMKSRGILPTSVTYSSLIHGL---CNIGL-------IEDAKCLFDEMRKEGLLPNV-ACYTALIGGYCKLG 721 (833)
Q Consensus 653 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~---~~~g~-------~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g 721 (833)
++.|.+.++.-...+ +.|...++.-..++ ++... +++|+.-|++.+. +.|+. .++.++..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 566777777655544 44666555444444 33333 3445555555555 56764 78888888887544
Q ss_pred ----C-------hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003295 722 ----Q-------MDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISP 775 (833)
Q Consensus 722 ----~-------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 775 (833)
+ +++|...|++... ..|+...|+.-+... ++|-++..++.+.+..+
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQGLGQ 140 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSSS--
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHHhhh
Confidence 2 4556666666666 479999988776554 57888888887766443
No 325
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.76 E-value=12 Score=30.34 Aligned_cols=42 Identities=12% Similarity=0.252 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003295 728 SVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMA 769 (833)
Q Consensus 728 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 769 (833)
+-++.+...++.|++.+..+.+++|.+.+++.-|+++++-..
T Consensus 28 r~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 28 RGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333333344444444444444444444444444444444443
No 326
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.42 E-value=9.2 Score=30.91 Aligned_cols=60 Identities=8% Similarity=0.118 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHH
Q 003295 201 YAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAIN 260 (833)
Q Consensus 201 ~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 260 (833)
+..+.++.+-..+..|++....+.+.++-|.+++..|..+|+.+...+..+...|..++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 445556666677888999999999999999999999999999887323334445655553
No 327
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.32 E-value=3.8 Score=27.04 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 778 ITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 778 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
.+++.|+..|...|++++|..++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777777777777777777665
No 328
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=79.80 E-value=83 Score=35.90 Aligned_cols=149 Identities=15% Similarity=0.163 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003295 657 FRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASI 736 (833)
Q Consensus 657 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 736 (833)
....+.+...-...+......++..|.+.|..+.|.++.+.+-.+-. ...-|..-+..+.++|+.+....+.+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll-- 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL-- 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH--
Confidence 34444444443333555556666777777777777766665544311 11233334444455555544444444333
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHCCCCCCHH
Q 003295 737 NIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEK-GISPDSITYNVFMDG--HCKGGNVEEAFKVCDRMLSEGLSLDEI 813 (833)
Q Consensus 737 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~ 813 (833)
..|+..|... ...+++.+... .+.+....|..+-+- ..+.|++.+|.+.+-.++..++.|...
T Consensus 466 -------------~~~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f 531 (566)
T PF07575_consen 466 -------------EEYCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSF 531 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------HHHhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHH
Confidence 2222222211 11111111110 011111111111111 134577888888887888777777766
Q ss_pred HHHHHHHhhc
Q 003295 814 TYTTLIDGWQ 823 (833)
Q Consensus 814 ~~~~l~~~~~ 823 (833)
-...|.+.+.
T Consensus 532 ~~~LL~d~lp 541 (566)
T PF07575_consen 532 WPLLLCDALP 541 (566)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 329
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.69 E-value=16 Score=34.35 Aligned_cols=77 Identities=16% Similarity=0.059 Sum_probs=45.2
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhcCCCHHH
Q 003295 719 KLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEK---GISPDSITYNVFMDGHCKGGNVEE 795 (833)
Q Consensus 719 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~l~~~~~~~g~~~~ 795 (833)
+.|+ ++|.+.|-.+...+.--++.....|+.-| ...+.++|+.++.++++. +-.+|+..+..|+..+.+.|+++.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3344 56666666666655444444444444333 355667777777766652 224466677777777777777766
Q ss_pred HH
Q 003295 796 AF 797 (833)
Q Consensus 796 A~ 797 (833)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 64
No 330
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.48 E-value=3 Score=26.13 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 744 TYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 744 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
+|..+...|...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555555566666555555554
No 331
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.46 E-value=4.6 Score=26.62 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 743 ITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 743 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
.+++.|...|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 5678888888888888888888888765
No 332
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.59 E-value=28 Score=38.27 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=23.7
Q ss_pred HcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003295 369 KKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEML 419 (833)
Q Consensus 369 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~ 419 (833)
+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|....
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 4555555555544432 34455555555555555555555555443
No 333
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=78.38 E-value=3.5 Score=25.81 Aligned_cols=28 Identities=21% Similarity=0.192 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 778 ITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 778 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
.+|..++..|...|++++|.+.|++.++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688899999999999999999999887
No 334
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=77.62 E-value=11 Score=30.81 Aligned_cols=44 Identities=11% Similarity=0.234 Sum_probs=20.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 727 ESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 727 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
.+-++.+...++.|++.+..+.+++|.+.+++.-|+++|+-...
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33344444444455555555555555555555555555555444
No 335
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.54 E-value=8.7 Score=38.33 Aligned_cols=102 Identities=14% Similarity=0.165 Sum_probs=60.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcC----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh
Q 003295 213 GIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRG----VSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVV 288 (833)
Q Consensus 213 ~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 288 (833)
|...++.+-..++..-....+++.+...+-+.... ..++...+ ..++ ++-.-+.++++.++..=++.|+.||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~ir-lllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHH-HHHccChHHHHHHHhCcchhccccchh
Confidence 33334555555555555566777777766666521 12222111 1122 223345667777777777777777777
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003295 289 TYNNIIHGLCRNGRLYEAFHLKEKMVLR 316 (833)
Q Consensus 289 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (833)
+++.+++.+.+.+++.+|..+.-.|..+
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7777777777777777777766666543
No 336
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=77.37 E-value=1e+02 Score=32.50 Aligned_cols=62 Identities=13% Similarity=0.105 Sum_probs=25.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc---CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003295 604 TYGVMIDGFCKADKIEEGETLFNEMISKKMEL---NPVVYNTLIRAYCKIGNTTAAFRLSNDMKS 665 (833)
Q Consensus 604 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 665 (833)
+|..++..+.+.|.++.|...+..+...+... .+......+..+...|+..+|+..++...+
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444445555555555444444322111 122222233333444444444444444443
No 337
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.18 E-value=21 Score=33.56 Aligned_cols=79 Identities=16% Similarity=0.105 Sum_probs=50.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCH
Q 003295 682 LCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASI---NIHPNKITYTIMIGGYCKLGDM 758 (833)
Q Consensus 682 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~ 758 (833)
+.+.|+ ++|.+.|-.+...+.--++.....|..-|. ..+.++|..++.+..+. +-.+|+..+.+|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344454 566777766666654455555555555444 56667777777776642 2255677777777777777777
Q ss_pred HHHH
Q 003295 759 KEAA 762 (833)
Q Consensus 759 ~~A~ 762 (833)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 7764
No 338
>PRK09687 putative lyase; Provisional
Probab=76.00 E-value=95 Score=31.55 Aligned_cols=201 Identities=15% Similarity=0.041 Sum_probs=108.6
Q ss_pred CHHHHHHHHHHHHhcCCH----HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCC-----HHHHHHHHHHHHHCCCccC
Q 003295 566 DNYTYNLLLHGLCSLGKM----EEAIELWEECKRTVFGPDIYTYGVMIDGFCKADK-----IEEGETLFNEMISKKMELN 636 (833)
Q Consensus 566 ~~~~~~~li~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~~~~~~~~~~ 636 (833)
|...-...+.++...|+. +++...+..+... .++..+-...+.++...+. ..++...+..... .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 444444445555555542 3455555554322 2444444444444443321 1223333333322 235
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 003295 637 PVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIG-LIEDAKCLFDEMRKEGLLPNVACYTALIG 715 (833)
Q Consensus 637 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 715 (833)
..+-...+.++++.|+ .+|+..+-.+.+. +|...-...+.++.+.+ .-..+...+..+.. .++..+-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence 5566666777777665 4566666666653 34444444455555542 23456666666664 356666677777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003295 716 GYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGH 787 (833)
Q Consensus 716 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 787 (833)
++.+.|+ ..|...+-+..+.+ + .....+.++...|.. +|+..+.++.+. .||..+-..-+++|
T Consensus 215 aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 215 GLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 7877777 45666666655532 2 234566777777774 688888887763 35665555555544
No 339
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.22 E-value=5.7 Score=26.95 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=12.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 003295 748 MIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 748 li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
|..+|...|+.+.|.+++++.+.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555555555555555555554
No 340
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=74.84 E-value=94 Score=30.92 Aligned_cols=52 Identities=17% Similarity=0.148 Sum_probs=31.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHhcCCHHHHHHH
Q 003295 538 LILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTY-------NLLLHGLCSLGKMEEAIEL 589 (833)
Q Consensus 538 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-------~~li~~~~~~g~~~~A~~~ 589 (833)
+.+-..+.+++++|...+.+++..|...|..+. ..+...|.+.|+...-.+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~ 67 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT 67 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 445556677777777777777777766555433 3344555555555544433
No 341
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=74.62 E-value=1e+02 Score=31.34 Aligned_cols=93 Identities=16% Similarity=0.158 Sum_probs=42.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh----CCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCChh----HH
Q 003295 640 YNTLIRAYCKIGNTTAAFRLSNDMKS----RGILPTSVTYSSLI-HGLCNIGLIEDAKCLFDEMRKEGLLPNVA----CY 710 (833)
Q Consensus 640 ~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~ 710 (833)
+.....-||+.|+.+.|++.+++..+ .|.+.|+..+..-+ -.|....-+.+-++..+.+.+.|...+.. +|
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY 186 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVY 186 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHH
Confidence 33444555666666666655544332 25555554443222 22223333444444445555555444332 22
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 003295 711 TALIGGYCKLGQMDEAESVLQEMA 734 (833)
Q Consensus 711 ~~li~~~~~~g~~~~A~~~~~~m~ 734 (833)
..+- +....++.+|-.+|-+..
T Consensus 187 ~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 187 QGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHH--HHHHHhHHHHHHHHHHHc
Confidence 2221 112346666666665554
No 342
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.82 E-value=1e+02 Score=30.89 Aligned_cols=68 Identities=22% Similarity=0.252 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 003295 711 TALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAE-----KGISPDSIT 779 (833)
Q Consensus 711 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 779 (833)
+.....|..+|.+.+|.++.++....+ +.+...|..++..+...|+--.|.+.++++.+ .|+.-|...
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 334455666777777777777766654 45566666677777777776666666555532 355554433
No 343
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=73.67 E-value=1.6 Score=39.18 Aligned_cols=54 Identities=13% Similarity=0.113 Sum_probs=27.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 003295 258 AINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKE 311 (833)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (833)
++..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444555555555555555554433445555555565655555555555443
No 344
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=73.56 E-value=1.1e+02 Score=31.20 Aligned_cols=83 Identities=19% Similarity=0.083 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--------
Q 003295 689 EDAKCLFDEMRKEGLLPNVACYTALIGGYCK----LGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLG-------- 756 (833)
Q Consensus 689 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-------- 756 (833)
..|...+.++...+ +......+...|.. ..+.++|...|.+..+.|. ......+. .+...|
T Consensus 172 ~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 172 KKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred HhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhh
Confidence 35677777766655 33333344444422 3366777777777777663 33333333 444444
Q ss_pred -------CHHHHHHHHHHHHHcCCCCCHH
Q 003295 757 -------DMKEAAKLLNVMAEKGISPDSI 778 (833)
Q Consensus 757 -------~~~~A~~~~~~m~~~g~~p~~~ 778 (833)
+...|...+......|......
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 273 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELGFDNACE 273 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcCChhHHH
Confidence 5566666666666655443333
No 345
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=73.41 E-value=21 Score=29.07 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=23.4
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003295 261 AFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLRE 317 (833)
Q Consensus 261 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 317 (833)
.+..+|++++|..+.+.+ +.||...|-+|-.+ |.|--+++...+.+|...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 334455555555544444 24555555444332 4444444444444444443
No 346
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=73.31 E-value=1.1e+02 Score=31.12 Aligned_cols=96 Identities=18% Similarity=0.160 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHH----hCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----H
Q 003295 708 ACYTALIGGYCKLGQMDEAESVLQEMA----SINIHPNKITYTI-MIGGYCKLGDMKEAAKLLNVMAEKGISPDS----I 778 (833)
Q Consensus 708 ~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~ 778 (833)
..+-....-||+-|+.+.|.+.+.+-. ..|.+-|...+.+ ++-.|..+.-..+-++..+.+.++|..-+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 344455667777787777776665543 3455666554433 222333444455666666667776654433 3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 779 TYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 779 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
+|..+ -|....++.+|-.+|-+.+.
T Consensus 185 vY~Gl--y~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGL--YCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHH--HHHHHHhHHHHHHHHHHHcc
Confidence 44433 23344667777777766554
No 347
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=72.99 E-value=1.8 Score=38.92 Aligned_cols=83 Identities=18% Similarity=0.155 Sum_probs=44.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 003295 293 IIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGN 372 (833)
Q Consensus 293 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~ 372 (833)
+|+.+.+.+..+....+++.+...+...+....+.++..|++.++.++....++.. +.+-...++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45555566666666666666665544445666666667777666666666555511 11222344444555555
Q ss_pred hHHHHHHHHH
Q 003295 373 ISEALKIRDD 382 (833)
Q Consensus 373 ~~~A~~~~~~ 382 (833)
+++|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 348
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=72.94 E-value=59 Score=29.02 Aligned_cols=17 Identities=0% Similarity=0.221 Sum_probs=9.0
Q ss_pred HhcCChhHHHHHHHHhh
Q 003295 229 VKANEVQKGIEVFETMC 245 (833)
Q Consensus 229 ~~~g~~~~A~~~~~~~~ 245 (833)
.+.|++++|+.+|++..
T Consensus 55 i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 55 IARGNYDEAARILRELL 71 (153)
T ss_pred HHcCCHHHHHHHHHhhh
Confidence 34555555555555554
No 349
>PHA02875 ankyrin repeat protein; Provisional
Probab=72.23 E-value=1.5e+02 Score=32.14 Aligned_cols=11 Identities=0% Similarity=0.018 Sum_probs=4.8
Q ss_pred HHHhcCChhHH
Q 003295 331 GLIKLEKFDDA 341 (833)
Q Consensus 331 ~~~~~g~~~~A 341 (833)
..++.|+.+.+
T Consensus 74 ~A~~~g~~~~v 84 (413)
T PHA02875 74 DAVEEGDVKAV 84 (413)
T ss_pred HHHHCCCHHHH
Confidence 33444554443
No 350
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.04 E-value=21 Score=33.85 Aligned_cols=76 Identities=16% Similarity=0.184 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CChhhHHHHHHH
Q 003295 221 CNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIA--PNVVTYNNIIHG 296 (833)
Q Consensus 221 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~ 296 (833)
.+.-++.+.+.+++.+|+...++-++..|-|...-..++..||-.|++++|..-++-.-+.... +-...|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445666777777777777777776656666666677777777788887777666665543211 223455555543
No 351
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=71.24 E-value=35 Score=33.01 Aligned_cols=64 Identities=19% Similarity=0.184 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCCH-------HHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Q 003295 744 TYTIMIGGYCKLGDM-------KEAAKLLNVMAEKGISP-----DSITYNVFMDGHCKGGNVEEAFKVCDRMLSEG 807 (833)
Q Consensus 744 ~~~~li~~~~~~g~~-------~~A~~~~~~m~~~g~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 807 (833)
.+.-+.|.|...|+- ..|.+.|.+..+..-.| +......++....+.|+.++|.++|.+++..+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 455666777777773 34566666665543222 23455567777788899999999999988853
No 352
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=71.03 E-value=32 Score=28.08 Aligned_cols=49 Identities=18% Similarity=0.181 Sum_probs=21.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Q 003295 752 YCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLSE 806 (833)
Q Consensus 752 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 806 (833)
+...|+|++|..+.+.+ ..||...|.+|-. .+.|..+++...+.+|..+
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 34455555555444433 2455554444422 3444444444444444443
No 353
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=70.67 E-value=65 Score=34.61 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=28.2
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChH
Q 003295 334 KLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNIS 374 (833)
Q Consensus 334 ~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~ 374 (833)
..+.++...+.+.++...|.....+.+|.-...|.+.|...
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch
Confidence 35667777777777777776655666777777777766543
No 354
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=70.66 E-value=7.3 Score=23.94 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=13.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc
Q 003295 258 AINAFCKRGRIEDAIGLFTKMEEL 281 (833)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~~ 281 (833)
+..++.+.|++++|.+.|+++.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 445555555555555555555543
No 355
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.52 E-value=1.1e+02 Score=30.03 Aligned_cols=50 Identities=18% Similarity=0.116 Sum_probs=24.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 003295 475 NGKQAEATELCFRLFEKGFTVNT---VTSNALIHGMCEAGNLKEAGKLLMEML 524 (833)
Q Consensus 475 ~g~~~~A~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~l~~m~ 524 (833)
..+.++|+.-|+++++....... .+...++..+.+.+++++....+.++.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 33566666666666554222222 233334555555555555555555543
No 356
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=70.44 E-value=28 Score=33.03 Aligned_cols=77 Identities=19% Similarity=0.155 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 003295 674 TYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASIN--IHPNKITYTIMIGG 751 (833)
Q Consensus 674 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~ 751 (833)
|.+..++.+.+.+.+.+|+...++-++.. +-|...-..++..||-.|++++|..-++-..... ..+-...|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556778889999999999999888763 4466677788999999999999998888776531 12234466666654
No 357
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=69.40 E-value=77 Score=30.75 Aligned_cols=80 Identities=19% Similarity=0.016 Sum_probs=36.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhH-HHHHHHHHHhcCChhHHH
Q 003295 650 IGNTTAAFRLSNDMKSRGILPTSVT-YSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVAC-YTALIGGYCKLGQMDEAE 727 (833)
Q Consensus 650 ~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~ 727 (833)
..+++.|+..|.+.+.. .|+..+ |..-+-++.+..+++.+..--.+.++ +.||.+- ...+..++.....+++|+
T Consensus 23 ~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred hhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHH
Confidence 34455555555544443 333322 33334444455555555544444444 3344322 222334444455555555
Q ss_pred HHHHHH
Q 003295 728 SVLQEM 733 (833)
Q Consensus 728 ~~~~~m 733 (833)
..+++.
T Consensus 99 ~~Lqra 104 (284)
T KOG4642|consen 99 KVLQRA 104 (284)
T ss_pred HHHHHH
Confidence 555555
No 358
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=69.08 E-value=1.3e+02 Score=30.18 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=29.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003295 642 TLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEM 698 (833)
Q Consensus 642 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 698 (833)
.....|...|.+.+|.++.++.+..+ +.+...+..++..+...|+--.|.+-++++
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34445555555555555555555543 334445555555555555544444444444
No 359
>PRK11619 lytic murein transglycosylase; Provisional
Probab=67.59 E-value=2.4e+02 Score=32.67 Aligned_cols=334 Identities=10% Similarity=0.054 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 003295 253 FLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGL 332 (833)
Q Consensus 253 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~ 332 (833)
..|..... ..+.|++.++..+..++...-+ .....|-.+...+. ....++...++++-. +.+.....-...+..+
T Consensus 35 ~~f~~A~~-a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~~L 109 (644)
T PRK11619 35 QRYQQIKQ-AWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAVQVTNFIRANP--TLPPARSLQSRFVNEL 109 (644)
T ss_pred HHHHHHHH-HHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHHHHHHHHHHCC--CCchHHHHHHHHHHHH
Confidence 34443333 3467777777777766643211 12233333333221 223444333333211 1111112222233344
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHH
Q 003295 333 IKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAE 412 (833)
Q Consensus 333 ~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 412 (833)
.+.+++.+....+. . ...+.......+.+....|+-++|.+..+.+=..|-. .....+.++..+.+.|.+....
T Consensus 110 a~~~~w~~~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d 183 (644)
T PRK11619 110 ARREDWRGLLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLA 183 (644)
T ss_pred HHccCHHHHHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHH
Confidence 45556555544211 1 1223333444555666677766666665555443322 3345556666666555444332
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003295 413 NALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDG-LLTLLVSGLCKNGKQAEATELCFRLFEK 491 (833)
Q Consensus 413 ~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~ 491 (833)
+..+ +......|+...|..+...+ .++.. ....++....+..+++. .+..
T Consensus 184 -~w~R----------------~~~al~~~~~~lA~~l~~~l-----~~~~~~~a~a~~al~~~p~~~~~---~~~~---- 234 (644)
T PRK11619 184 -YLER----------------IRLAMKAGNTGLVTYLAKQL-----PADYQTIASALIKLQNDPNTVET---FART---- 234 (644)
T ss_pred -HHHH----------------HHHHHHCCCHHHHHHHHHhc-----ChhHHHHHHHHHHHHHCHHHHHH---Hhhc----
Confidence 1221 22233445555555544433 11111 12222222222222211 1111
Q ss_pred CCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHhhCCC-CCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC
Q 003295 492 GFTVNTVTSNALIHGM--CEAGNLKEAGKLLMEMLQRGL-ILD--KVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPD 566 (833)
Q Consensus 492 g~~~~~~~~~~li~~~--~~~g~~~~A~~~l~~m~~~g~-~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 566 (833)
.+++...-..++.++ ....+.+.|..++........ .+. ...+..+.......+...+|...++...... .+
T Consensus 235 -~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~ 311 (644)
T PRK11619 235 -TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QS 311 (644)
T ss_pred -cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CC
Confidence 112221111111122 234566888888887754432 211 1233444434444433567777776654432 23
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 003295 567 NYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMIS 630 (833)
Q Consensus 567 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 630 (833)
......-+....+.++++.+...+..|....- -...-.-=+..++...|+.++|...|+.+..
T Consensus 312 ~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 312 TSLLERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred cHHHHHHHHHHHHccCHHHHHHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 44445555555688899888888888754321 1222222345666668999999999988743
No 360
>PRK11619 lytic murein transglycosylase; Provisional
Probab=67.15 E-value=2.5e+02 Score=32.60 Aligned_cols=423 Identities=9% Similarity=0.013 Sum_probs=200.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 003295 287 VVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDG 366 (833)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~ 366 (833)
...|.....++ +.|++.++..+...+...-+ .....|..|...+. ....++....+++-... ......-..-+..
T Consensus 34 r~~f~~A~~a~-~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~~~--P~~~~Lr~~~l~~ 108 (644)
T PRK11619 34 RQRYQQIKQAW-DNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAVQVTNFIRANPTL--PPARSLQSRFVNE 108 (644)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHHHHHHHHHHCCCC--chHHHHHHHHHHH
Confidence 34455555554 67888888877776643211 22233333333221 22344444433332211 1111222223344
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHH
Q 003295 367 YCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSA 446 (833)
Q Consensus 367 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 446 (833)
+.+.+++.+..+.+. . .+.+.........+....|+.++|.+..+.+-..|.. .....+.++..+.+.|.+...
T Consensus 109 La~~~~w~~~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~ 182 (644)
T PRK11619 109 LARREDWRGLLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPL 182 (644)
T ss_pred HHHccCHHHHHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHH
Confidence 556667766555221 1 1235555566777777888877777666666544432 344445555544444433322
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 003295 447 LHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQR 526 (833)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~ 526 (833)
..+. -+......|+...|..+...+-.. .......++..+..-.+ +..++..
T Consensus 183 ----------------d~w~-R~~~al~~~~~~lA~~l~~~l~~~----~~~~a~a~~al~~~p~~---~~~~~~~---- 234 (644)
T PRK11619 183 ----------------AYLE-RIRLAMKAGNTGLVTYLAKQLPAD----YQTIASALIKLQNDPNT---VETFART---- 234 (644)
T ss_pred ----------------HHHH-HHHHHHHCCCHHHHHHHHHhcChh----HHHHHHHHHHHHHCHHH---HHHHhhc----
Confidence 1111 233445667777776666554111 11222333333322222 2222111
Q ss_pred CCCCCHHHHHHHHHHHH--hcCChhhHHHHHHHHHHCC-CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 003295 527 GLILDKVTYNTLILGCC--KDGKPEEGFKLKEDMIKRG-IQPDN--YTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPD 601 (833)
Q Consensus 527 g~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g-~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 601 (833)
+.++...-..++.++. ...+.+.|..++....... ..+.. .....+.......+...+|...++...... .+
T Consensus 235 -~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~ 311 (644)
T PRK11619 235 -TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QS 311 (644)
T ss_pred -cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CC
Confidence 1122222222222222 3455688888888775443 22221 223334333333333566777776654332 23
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003295 602 IYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHG 681 (833)
Q Consensus 602 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 681 (833)
.....--+..-...++++.+...+..|....- -...-.--+..++...|+.++|...|+.+... .+ -|..|...
T Consensus 312 ~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~~--fYG~LAa~ 385 (644)
T PRK11619 312 TSLLERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---RG--FYPMVAAQ 385 (644)
T ss_pred cHHHHHHHHHHHHccCHHHHHHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--cHHHHHHH
Confidence 33334444455578889888888888755322 23344445666767789999999999887432 12 22222211
Q ss_pred HHhcCCHHHHHHHH--HHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 003295 682 LCNIGLIEDAKCLF--DEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMK 759 (833)
Q Consensus 682 ~~~~g~~~~A~~~~--~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 759 (833)
+.|..-. ...- .. ....+..+. --.-+..+...|+..+|...+..+... .+......+.....+.|.++
T Consensus 386 --~Lg~~~~-~~~~~~~~-~~~~~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~ 456 (644)
T PRK11619 386 --RLGEEYP-LKIDKAPK-PDSALTQGP--EMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWD 456 (644)
T ss_pred --HcCCCCC-CCCCCCCc-hhhhhccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHH
Confidence 1221100 0000 00 000000000 011234455677777887777777653 24444555555556667777
Q ss_pred HHHHHHH
Q 003295 760 EAAKLLN 766 (833)
Q Consensus 760 ~A~~~~~ 766 (833)
.++....
T Consensus 457 ~ai~~~~ 463 (644)
T PRK11619 457 LSVQATI 463 (644)
T ss_pred HHHHHHh
Confidence 6665554
No 361
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=66.86 E-value=7.1 Score=22.82 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=12.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHH
Q 003295 780 YNVFMDGHCKGGNVEEAFKVCD 801 (833)
Q Consensus 780 ~~~l~~~~~~~g~~~~A~~~~~ 801 (833)
...+...+...|+.++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445556666666666665553
No 362
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.40 E-value=2.8e+02 Score=33.03 Aligned_cols=38 Identities=11% Similarity=0.001 Sum_probs=18.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003295 471 GLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMC 508 (833)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 508 (833)
.++.....+-+..+++.+....-..+....+.++..|+
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 34444445555555555554444444455555555444
No 363
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.92 E-value=2.9e+02 Score=32.96 Aligned_cols=39 Identities=18% Similarity=0.059 Sum_probs=26.6
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 003295 401 GFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCI 439 (833)
Q Consensus 401 ~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~ 439 (833)
.|++....+-+...++.+....-.++....+.++..|+.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 456667777777888887776555566666666666654
No 364
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.89 E-value=1.3e+02 Score=29.10 Aligned_cols=23 Identities=4% Similarity=0.088 Sum_probs=13.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC
Q 003295 472 LCKNGKQAEATELCFRLFEKGFT 494 (833)
Q Consensus 472 ~~~~g~~~~A~~~~~~~~~~g~~ 494 (833)
-...+++.+|..+|+++......
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455666666666666555443
No 365
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=65.05 E-value=10 Score=23.20 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=11.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 003295 748 MIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 748 li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
++.++.+.|++++|.+.|+++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 44444455555555555555544
No 366
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=64.75 E-value=1.6e+02 Score=29.55 Aligned_cols=25 Identities=28% Similarity=0.203 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 003295 566 DNYTYNLLLHGLCSLGKMEEAIELW 590 (833)
Q Consensus 566 ~~~~~~~li~~~~~~g~~~~A~~~~ 590 (833)
|+.....+...+.+.|++.+|...|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5666777777788888887777666
No 367
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=63.76 E-value=1.6e+02 Score=29.34 Aligned_cols=52 Identities=19% Similarity=0.159 Sum_probs=30.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhH-------HHHHHHHHHcCChHHHHH
Q 003295 327 ILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVY-------NTLIDGYCKKGNISEALK 378 (833)
Q Consensus 327 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y-------~~li~~~~~~g~~~~A~~ 378 (833)
.+.+-.++.+++++|+..+.+...+|+..|..+. ..+-..|...|+...-.+
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 3455566677777777777777777766654432 234445555555544333
No 368
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.53 E-value=4.2 Score=41.13 Aligned_cols=119 Identities=20% Similarity=0.174 Sum_probs=82.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 003295 683 CNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKI-TYTIMIGGYCKLGDMKEA 761 (833)
Q Consensus 683 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A 761 (833)
...|.+++|++.|...+... ++....|..-..++.+.++...|++-+....+ +.||.. -|-.-..+-...|++++|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHH
Confidence 35678889999998888864 45666777777888888888899888888877 355543 444445556667899999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Q 003295 762 AKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLSE 806 (833)
Q Consensus 762 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 806 (833)
...+....+.++.+.... .|=...-..+..++-...+++..+.
T Consensus 202 a~dl~~a~kld~dE~~~a--~lKeV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSA--TLKEVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHHHHhccccHHHHH--HHHHhccchhhhhhchhHHHHHHHH
Confidence 999998888766554433 3334445556666666556655553
No 369
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=62.52 E-value=16 Score=24.83 Aligned_cols=23 Identities=17% Similarity=0.482 Sum_probs=12.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHh
Q 003295 363 LIDGYCKKGNISEALKIRDDMVS 385 (833)
Q Consensus 363 li~~~~~~g~~~~A~~~~~~m~~ 385 (833)
|..+|.+.|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555555555555555555554
No 370
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=62.31 E-value=50 Score=36.23 Aligned_cols=104 Identities=16% Similarity=0.024 Sum_probs=59.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 003295 473 CKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGF 552 (833)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 552 (833)
...|+...|..-+.......+....+..-.|...+.+.|...+|..++.+.+.... ..+.++..+.+++....+++.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~-sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS-SEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc-cCchHHHhcchhHHHHhhhHHHH
Confidence 34555555555555544432222333344455555566666667777666665542 25566666777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003295 553 KLKEDMIKRGIQPDNYTYNLLLHGLC 578 (833)
Q Consensus 553 ~~~~~m~~~g~~p~~~~~~~li~~~~ 578 (833)
+.|++..+...+ +.+.-+.|...-|
T Consensus 697 ~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 777777766433 4455555544433
No 371
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=61.95 E-value=20 Score=27.87 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=23.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC-C-HHHHHHHHHHHhcCCCHHHHHHH
Q 003295 754 KLGDMKEAAKLLNVMAEKGISP-D-SITYNVFMDGHCKGGNVEEAFKV 799 (833)
Q Consensus 754 ~~g~~~~A~~~~~~m~~~g~~p-~-~~~~~~l~~~~~~~g~~~~A~~~ 799 (833)
...+.++|+..|.+.+++-..+ + -.+...|+.+|+..|++++.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666665542222 1 13455555666666666555554
No 372
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=61.61 E-value=89 Score=31.14 Aligned_cols=87 Identities=11% Similarity=0.079 Sum_probs=38.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHH----
Q 003295 574 LHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCK---- 649 (833)
Q Consensus 574 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 649 (833)
|.++...+++.+++...-+--+.--+........-|-.|.|.++...+.++-...+...-.-+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4555555665555544333222111111222233344455555555555555555443222233335554444433
Q ss_pred -cCChHHHHHHH
Q 003295 650 -IGNTTAAFRLS 660 (833)
Q Consensus 650 -~g~~~~A~~~~ 660 (833)
.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 35555555544
No 373
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=59.01 E-value=16 Score=39.04 Aligned_cols=105 Identities=18% Similarity=0.132 Sum_probs=69.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHH-HHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 003295 679 IHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTA-LIGGYCKLGQMDEAESVLQEMASINIHPN-KITYTIMIGGYCKLG 756 (833)
Q Consensus 679 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g 756 (833)
++...+.+.++.|..++.++++. .||...|.. -..++.+.+++..|+.=+.++++.. |. ...|.-=..++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHH
Confidence 34455667788888888888884 676555433 3477788888888888888887753 33 234444445566666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 003295 757 DMKEAAKLLNVMAEKGISPDSITYNVFMDGHCK 789 (833)
Q Consensus 757 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 789 (833)
++.+|...|+.... +.|+..-....+.-|-.
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 77777777777666 67777666666655543
No 374
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=58.67 E-value=39 Score=24.09 Aligned_cols=30 Identities=30% Similarity=0.500 Sum_probs=16.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003295 747 IMIGGYCKLGDMKEAAKLLNVMAEKGISPDSI 778 (833)
Q Consensus 747 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 778 (833)
.+.-++.+.|++++|.++.+.+++ +.|+..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~ 35 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNR 35 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-H
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcH
Confidence 344456666666666666666666 455543
No 375
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=58.46 E-value=2.1e+02 Score=28.92 Aligned_cols=18 Identities=17% Similarity=0.444 Sum_probs=10.1
Q ss_pred hHHHHHHHHHhcCCHHHH
Q 003295 464 LLTLLVSGLCKNGKQAEA 481 (833)
Q Consensus 464 ~~~~li~~~~~~g~~~~A 481 (833)
+|..|+.++|..|+.+-+
T Consensus 323 ~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHHHHhcCChHHHH
Confidence 455566666666655543
No 376
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=58.32 E-value=88 Score=30.40 Aligned_cols=119 Identities=16% Similarity=0.080 Sum_probs=84.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCH
Q 003295 681 GLCNIGLIEDAKCLFDEMRKEGLLPNV-ACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKI-TYTIMIGGYCKLGDM 758 (833)
Q Consensus 681 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~ 758 (833)
-|....+++.|+..+.+.+. +.|+. ..|+.-+.++.+..+++.+..--.+..+ +.||.+ ....+..++.....+
T Consensus 19 k~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccc
Confidence 35566778999998888887 46877 4456677788889999999888888777 467755 445566777788899
Q ss_pred HHHHHHHHHHHH----cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003295 759 KEAAKLLNVMAE----KGISPDSITYNVFMDGHCKGGNVEEAFKVCDRM 803 (833)
Q Consensus 759 ~~A~~~~~~m~~----~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 803 (833)
++|+..++++.. ..+.+-......|..+=...=...+..++.++.
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 999999999854 234444556777766554444455565555443
No 377
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=58.25 E-value=2.5e+02 Score=29.74 Aligned_cols=98 Identities=12% Similarity=0.102 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhh--------cCC------------------CCCHHHHHHH---HHHHHhcCCh
Q 003295 218 LKTCNFLLNSLVKANEVQKGIEVFETMC--------RGV------------------SPDVFLFSTA---INAFCKRGRI 268 (833)
Q Consensus 218 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~--------~~~------------------~~~~~~~~~l---i~~~~~~g~~ 268 (833)
+.++..+-..+.++|+.+.|.++.++++ ..+ .-|...|.++ |..+.+.|.+
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~ 119 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW 119 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Confidence 5566667777788888777777766664 111 1123333322 4556667777
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCChhHHHHHHHHHHh
Q 003295 269 EDAIGLFTKMEELGIAPNVVTYNNIIHGLC-RNGRLYEAFHLKEKMVL 315 (833)
Q Consensus 269 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~ 315 (833)
..|.++.+-+....+.-|+..-...|+.|+ +.++++--+++.+....
T Consensus 120 rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 120 RTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 777777777766655545665566666665 45666666666655443
No 378
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.18 E-value=1.9e+02 Score=28.18 Aligned_cols=145 Identities=19% Similarity=0.217 Sum_probs=67.8
Q ss_pred CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH
Q 003295 247 GVSPDVF-LFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITY 325 (833)
Q Consensus 247 ~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 325 (833)
|.+.|.. +|.-..++| +.+++++|...++...+ .|+..|++..|-...-++-+. .+.|.
T Consensus 68 ~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aie---------------Iyt~~Grf~~aAk~~~~iaEi-yEsdl--- 127 (288)
T KOG1586|consen 68 GSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIE---------------IYTDMGRFTMAAKHHIEIAEI-YESDL--- 127 (288)
T ss_pred CCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHH---------------HHHhhhHHHHHHhhhhhHHHH-HhhhH---
Confidence 4444433 344344443 45577777777666543 355666666555443333221 01111
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCh---hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHH--
Q 003295 326 SILINGLIKLEKFDDANFVLKEMSVR--GFVPNY---VVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSL-- 398 (833)
Q Consensus 326 ~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~---~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-- 398 (833)
.++++|+..++...+- |-..+. ..+.-....-...+++.+|.++|+++....+..+..-|..-
T Consensus 128 ----------~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 128 ----------QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred ----------HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 3444444444444321 101111 12222333344567788888888887766555444444321
Q ss_pred --HHHHHh--cCChhHHHHHHHHHHHC
Q 003295 399 --IHGFCK--SGQMDNAENALEEMLSR 421 (833)
Q Consensus 399 --i~~~~~--~g~~~~A~~~l~~~~~~ 421 (833)
-.++|. ..+.-.+...+++..+.
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 112222 24455555555555554
No 379
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=58.14 E-value=64 Score=27.71 Aligned_cols=44 Identities=14% Similarity=0.308 Sum_probs=25.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003295 728 SVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEK 771 (833)
Q Consensus 728 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 771 (833)
+-++.+...++.|++.....-+++|.+.+++..|+.+|+-+..+
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33444444555666666666666666666666666666655543
No 380
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=57.38 E-value=21 Score=20.82 Aligned_cols=24 Identities=29% Similarity=0.319 Sum_probs=10.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 003295 746 TIMIGGYCKLGDMKEAAKLLNVMA 769 (833)
Q Consensus 746 ~~li~~~~~~g~~~~A~~~~~~m~ 769 (833)
..+...+...|++++|...+++.+
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334444444444444444444443
No 381
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=56.48 E-value=48 Score=36.37 Aligned_cols=152 Identities=18% Similarity=0.045 Sum_probs=89.3
Q ss_pred CCCCHHHHHHHHHHHHhc--CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCChhh
Q 003295 248 VSPDVFLFSTAINAFCKR--GRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLC-RNGRLYEAFHLKEKMVLREVEPSLIT 324 (833)
Q Consensus 248 ~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~t 324 (833)
.-|+..+.-+++.-.... ..-+-|-.+|--|..- ..|-=++.|. ...|. -.|+...|...+............+.
T Consensus 567 ~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~-~~p~w~~ln~-aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 567 KMPDDHARKILLSRINNYTIPEEEIGSFLFHAINKP-NAPIWLILNE-AGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred cCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCC-CCCeEEEeec-ccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 345555554444333221 1223344455555431 1222223332 23333 36888888888877765543334455
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 003295 325 YSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFC 403 (833)
Q Consensus 325 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 403 (833)
...|.+.+.+.|-..+|-.++.+..... ....-++..+..+|....+++.|++.|++..+.... +.+.-+.|...-|
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 6667777777777778888777776554 234566777778888888888888888887776433 5566666665555
No 382
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=56.16 E-value=6.3e+02 Score=33.70 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=69.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHH----HhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 003295 292 NIIHGLCRNGRLYEAFHLKEKM----VLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGY 367 (833)
Q Consensus 292 ~li~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~ 367 (833)
++..+-.+.|.+.+|...++.- .+. .-...-|-.+-..|..-++.|....+...-.. .|+ . ..-|-..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l-~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--L-YQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--H-HHHHHHH
Confidence 4455556778888888888772 221 11222334444477777777777766654111 122 2 2234456
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003295 368 CKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEML 419 (833)
Q Consensus 368 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~ 419 (833)
...|++..|...|+.+.+.+.. ...+++-++......|.++.+.-..+...
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~ 1510 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLI 1510 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchh
Confidence 6778888888888888876422 35566666665556666666665444433
No 383
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=55.79 E-value=1.2e+02 Score=25.41 Aligned_cols=79 Identities=15% Similarity=0.097 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003295 198 GFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTK 277 (833)
Q Consensus 198 ~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 277 (833)
..++|..+.+++...+.. ...+--+-+..+..+|+|++| +..-.....||...|.++. -.+.|--+++...+.+
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA---LLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTR 94 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH---HHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH---HHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHH
Confidence 346677776666665432 233333445556667777776 2222233456666664333 3456666666666666
Q ss_pred HHHcC
Q 003295 278 MEELG 282 (833)
Q Consensus 278 m~~~g 282 (833)
+...|
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 65543
No 384
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=54.88 E-value=2.4e+02 Score=28.48 Aligned_cols=114 Identities=9% Similarity=0.063 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHC-CCCCChhHHHHHHHHHHhcCChhHHHH
Q 003295 653 TTAAFRLSNDMKS-RGILPTSVTYSSLIHGLCN-IG-LIEDAKCLFDEMRKE-GLLPNVACYTALIGGYCKLGQMDEAES 728 (833)
Q Consensus 653 ~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~-~g-~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~ 728 (833)
+.+|+++|+...- ..+--|..+...+++.... .+ ....-.++.+-+... |-.++..+...++..+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3455555552211 1233344445555544433 11 112222233333322 335566666677777777777777777
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003295 729 VLQEMASI-NIHPNKITYTIMIGGYCKLGDMKEAAKLLN 766 (833)
Q Consensus 729 ~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 766 (833)
+++..... +..-|...|..+|+.-...|+..-..++..
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 77776643 334566677777777777777655554443
No 385
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=54.87 E-value=3.7e+02 Score=30.67 Aligned_cols=44 Identities=20% Similarity=0.096 Sum_probs=21.4
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 447 LHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFRLFE 490 (833)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (833)
...+.+++.+-+-.+.....-++..|.+.|-.+.|.++++.+-.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~ 433 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQ 433 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444444444444445555566666666666666666555443
No 386
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=54.08 E-value=2.4e+02 Score=28.25 Aligned_cols=81 Identities=21% Similarity=0.294 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003295 496 NTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLH 575 (833)
Q Consensus 496 ~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 575 (833)
++.....+...|.+.|++.+|...|-.-. .++...+..++......|...++ |...-.+++
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~----~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL- 149 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT----DPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL- 149 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC----ChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-
Confidence 56677777777888888777776653321 11233332233333333333332 222222222
Q ss_pred HHHhcCCHHHHHHHHHHHhh
Q 003295 576 GLCSLGKMEEAIELWEECKR 595 (833)
Q Consensus 576 ~~~~~g~~~~A~~~~~~~~~ 595 (833)
.|...++...|...++...+
T Consensus 150 ~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 150 QYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 34456777777777766554
No 387
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=53.31 E-value=82 Score=27.07 Aligned_cols=63 Identities=11% Similarity=0.187 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhc
Q 003295 760 EAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSLDEITYTTLIDGWQ 823 (833)
Q Consensus 760 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 823 (833)
+..+-++.+....+.|++.+...-+++|.+.+++.-|.++|+-+..+ +.+....|..+++.+.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~elk 129 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVKELK 129 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHHHHH
Confidence 44566777778889999999999999999999999999999888764 3333345776666543
No 388
>PHA03100 ankyrin repeat protein; Provisional
Probab=53.17 E-value=3.4e+02 Score=30.03 Aligned_cols=15 Identities=27% Similarity=0.246 Sum_probs=7.8
Q ss_pred HHHHHHHhCCCCCCH
Q 003295 204 DVFSIFSSKGIFPSL 218 (833)
Q Consensus 204 ~~f~~~~~~~~~p~~ 218 (833)
++++.+.+.|..|+.
T Consensus 49 ~ivk~Ll~~g~~~~~ 63 (480)
T PHA03100 49 DVVKILLDNGADINS 63 (480)
T ss_pred HHHHHHHHcCCCCCC
Confidence 344455566665543
No 389
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.49 E-value=2.5e+02 Score=27.84 Aligned_cols=69 Identities=12% Similarity=-0.034 Sum_probs=45.9
Q ss_pred CCCCCcccHHHHHHH-HHhcCChhHHHHHHHHHHHCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 422 GLSINQGAYTSVIKW-LCINSRFNSALHFTKEMLLRNLRPGDGLL---TLLVSGLCKNGKQAEATELCFRLFE 490 (833)
Q Consensus 422 g~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~ 490 (833)
+..||+..-|..-.. -.+..++++|+.-|.+.++........-+ ..++....+.|++++..+.+.+++.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 445565543332221 12345789999999998887655555444 4567788899999998888887664
No 390
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=52.19 E-value=3e+02 Score=28.69 Aligned_cols=122 Identities=9% Similarity=0.026 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHH
Q 003295 688 IEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCK---LGDMKEAAKL 764 (833)
Q Consensus 688 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~ 764 (833)
.+.-+.+++++++.+ +.+...+-.++..+.+..+.++..+.|+++.... +-+...|...+..... .-.+++....
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 345566677766652 3345555666666666667777777777777642 3355666666655443 2245555555
Q ss_pred HHHHHHc------CC------CCCH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC-CCC
Q 003295 765 LNVMAEK------GI------SPDS-----ITYNVFMDGHCKGGNVEEAFKVCDRMLSEGL-SLD 811 (833)
Q Consensus 765 ~~~m~~~------g~------~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~ 811 (833)
|.+.++. |. .++. .++..+..-+..+|..+.|..+++-+++.++ .|+
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPE 189 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcc
Confidence 5554431 11 0111 2233344445678888999999888888655 444
No 391
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=52.16 E-value=1.4e+02 Score=29.83 Aligned_cols=87 Identities=18% Similarity=0.155 Sum_probs=49.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----
Q 003295 504 IHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCS---- 579 (833)
Q Consensus 504 i~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---- 579 (833)
|.++...+++.++....-+-.+.--+........-|-.|.|.+.+..+.++-...+...-+-+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5667777777777766554443322223344444555677777777777777776665333333445555554433
Q ss_pred -cCCHHHHHHHH
Q 003295 580 -LGKMEEAIELW 590 (833)
Q Consensus 580 -~g~~~~A~~~~ 590 (833)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666766655
No 392
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=50.56 E-value=69 Score=22.82 Aligned_cols=27 Identities=37% Similarity=0.598 Sum_probs=12.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHCCCCCC
Q 003295 783 FMDGHCKGGNVEEAFKVCDRMLSEGLSLD 811 (833)
Q Consensus 783 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 811 (833)
+.-++.+.|++++|.+..+.+++ +.|+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~ 33 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPD 33 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 33344455555555555555554 4444
No 393
>PHA02875 ankyrin repeat protein; Provisional
Probab=50.24 E-value=3.6e+02 Score=29.14 Aligned_cols=32 Identities=13% Similarity=0.041 Sum_probs=14.7
Q ss_pred HHHHHhCCCCCCHHH--HHHHHHHHHhcCChhHH
Q 003295 206 FSIFSSKGIFPSLKT--CNFLLNSLVKANEVQKG 237 (833)
Q Consensus 206 f~~~~~~~~~p~~~~--~~~ll~~~~~~g~~~~A 237 (833)
++.+.+.|..|+... ..+.+...++.|+.+-+
T Consensus 18 v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v 51 (413)
T PHA02875 18 ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI 51 (413)
T ss_pred HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH
Confidence 344455666555432 22334444455555433
No 394
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=50.14 E-value=3.6e+02 Score=29.13 Aligned_cols=18 Identities=11% Similarity=0.104 Sum_probs=13.7
Q ss_pred cCCCHHHHHHHHHHHHHC
Q 003295 789 KGGNVEEAFKVCDRMLSE 806 (833)
Q Consensus 789 ~~g~~~~A~~~~~~m~~~ 806 (833)
...++..|.++++++.+-
T Consensus 788 ~~~~~~~~~~~~~~~~~~ 805 (831)
T PRK15180 788 HLRDYTQALQYWQRLEKV 805 (831)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 446778888888888774
No 395
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=49.50 E-value=1.6e+02 Score=24.70 Aligned_cols=78 Identities=9% Similarity=0.093 Sum_probs=50.1
Q ss_pred ChhHHHHHHHHhh-cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 003295 233 EVQKGIEVFETMC-RGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKE 311 (833)
Q Consensus 233 ~~~~A~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (833)
+.++|..+.+... .+. -....--+-+..+..+|++++|+ .. ......||...|-+|-. .+.|--+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL---l~-~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL---LL-PQCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH---HH-HTTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH---Hh-cccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 5677777777776 333 23334445566788999999992 22 22234689988887765 48899999999999
Q ss_pred HHHhCC
Q 003295 312 KMVLRE 317 (833)
Q Consensus 312 ~m~~~~ 317 (833)
++...|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 888765
No 396
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=49.34 E-value=37 Score=25.10 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=9.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 003295 363 LIDGYCKKGNISEALKIRDDMV 384 (833)
Q Consensus 363 li~~~~~~g~~~~A~~~~~~m~ 384 (833)
+|.+|...|++++|.++++++.
T Consensus 29 vI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444444444444444443
No 397
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=49.07 E-value=49 Score=31.39 Aligned_cols=55 Identities=16% Similarity=0.015 Sum_probs=49.2
Q ss_pred cCCChHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHHcCC
Q 003295 93 SNVNPKTALKFFYFASQSCNFRFTVRSYCLLIRLLLFSNLLSPARLLLIRLIDGK 147 (833)
Q Consensus 93 ~~~~~~~a~~ff~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~ 147 (833)
...|+.....+-.|+.+-..+++++..|..++.++...|+.++|+..+.++..-.
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5678999999999999888888999999999999999999999999999887643
No 398
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=48.91 E-value=18 Score=31.40 Aligned_cols=28 Identities=29% Similarity=0.602 Sum_probs=14.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003295 791 GNVEEAFKVCDRMLSEGLSLDEITYTTLID 820 (833)
Q Consensus 791 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 820 (833)
|.-.+|..+|++|++.|-+||. |+.|+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 4444455555555555555553 444443
No 399
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=47.85 E-value=2.1e+02 Score=28.19 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=10.5
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 003295 753 CKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 753 ~~~g~~~~A~~~~~~m~~ 770 (833)
-..|+.++|.++.+++.+
T Consensus 180 ei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 180 EILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HTSS-HHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHH
Confidence 346777777766666544
No 400
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=47.81 E-value=3.1e+02 Score=27.71 Aligned_cols=123 Identities=11% Similarity=0.151 Sum_probs=72.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCChhhHHHHHHHHHh-cCC-hhHHHHHHHHHH-HCCCCCChhhHHHHHH
Q 003295 290 YNNIIHGLCRNGRLYEAFHLKEKMVL-REVEPSLITYSILINGLIK-LEK-FDDANFVLKEMS-VRGFVPNYVVYNTLID 365 (833)
Q Consensus 290 ~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~t~~~li~~~~~-~g~-~~~A~~~~~~m~-~~g~~p~~~~y~~li~ 365 (833)
|..|+. ++.-+.+|+.+|+.... ..+--|..+...|++.... .+. ...-.++.+-+. ..|-.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 554443 33455667777763221 1233355555556655554 221 222223333332 2234566777778888
Q ss_pred HHHHcCChHHHHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCChhHHHHHH
Q 003295 366 GYCKKGNISEALKIRDDMVSK-GMSPNSVTFNSLIHGFCKSGQMDNAENAL 415 (833)
Q Consensus 366 ~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~l 415 (833)
.+++.+++.+-.++.+.-... +..-|...|..+|+...+.|+..-...+.
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 888888888888888776654 55567888888888888888865444433
No 401
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=47.79 E-value=73 Score=24.88 Aligned_cols=49 Identities=8% Similarity=0.001 Sum_probs=32.2
Q ss_pred hcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003295 719 KLGQMDEAESVLQEMASINIHPN--KITYTIMIGGYCKLGDMKEAAKLLNV 767 (833)
Q Consensus 719 ~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~ 767 (833)
...+.++|+..|....+.-..+. -.++..++.+|+.-|++++++++...
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888887776432221 13566777888888888887766443
No 402
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=47.53 E-value=97 Score=25.17 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=13.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHH
Q 003295 783 FMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 783 l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
+.......|++++|.+.+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 44445556666666666666655
No 403
>PF13934 ELYS: Nuclear pore complex assembly
Probab=47.12 E-value=2.7e+02 Score=27.17 Aligned_cols=105 Identities=9% Similarity=0.123 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 003295 183 ADLLVHVYCTQFKNLGFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAF 262 (833)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 262 (833)
+-.+++++. .+..++++.|++.+- .....|+ --..++.++.+.|+.+.|..+++.+.. ...+......++..
T Consensus 79 ~~~~~~g~W-~LD~~~~~~A~~~L~---~ps~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p-~l~s~~~~~~~~~~- 150 (226)
T PF13934_consen 79 YIKFIQGFW-LLDHGDFEEALELLS---HPSLIPW--FPDKILQALLRRGDPKLALRYLRAVGP-PLSSPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHH-HhChHhHHHHHHHhC---CCCCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCC-CCCCHHHHHHHHHH-
Confidence 445555554 235677788887652 1112222 223588888889999999999988741 12223333434444
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 003295 263 CKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLC 298 (833)
Q Consensus 263 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 298 (833)
..+|.+.||..+-+...+.. ....+..++..+.
T Consensus 151 La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 56788889887776665421 1234555555554
No 404
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=46.94 E-value=1.8e+02 Score=24.55 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 003295 430 YTSVIKWLCINSRFNSALHFTKEMLL 455 (833)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~~~~ 455 (833)
|..++..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44444444444444555544444443
No 405
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=46.28 E-value=2.5e+02 Score=26.18 Aligned_cols=42 Identities=12% Similarity=0.184 Sum_probs=24.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 003295 293 IIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEK 337 (833)
Q Consensus 293 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 337 (833)
.+-.|.+.|.+++|.+++++... .|+......-+....+..+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence 34456677777777777777765 3455544444444444433
No 406
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=46.14 E-value=1.4e+02 Score=25.99 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003295 760 EAAKLLNVMAEKGISP-DSITYNVFMDGHCKGGNVEEAFKVCDR 802 (833)
Q Consensus 760 ~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 802 (833)
++.++|+.|..+|+-- -+..|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 6777777777766544 345666677777777777777777654
No 407
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=45.80 E-value=1.5e+02 Score=31.70 Aligned_cols=54 Identities=22% Similarity=0.321 Sum_probs=32.8
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCChh--hHHHHHHHHH--HcCChHHHHHHHHHHHh
Q 003295 331 GLIKLEKFDDANFVLKEMSVRGFVPNYV--VYNTLIDGYC--KKGNISEALKIRDDMVS 385 (833)
Q Consensus 331 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~y~~li~~~~--~~g~~~~A~~~~~~m~~ 385 (833)
-+...+++..|.++|+++..+ +.++.. .|..+..+|. ...++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 444677777777777777776 444333 3344444443 45667777777776654
No 408
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=45.02 E-value=1.6e+02 Score=24.86 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=20.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh
Q 003295 360 YNTLIDGYCKKGNISEALKIRDDMVS 385 (833)
Q Consensus 360 y~~li~~~~~~g~~~~A~~~~~~m~~ 385 (833)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 77788888888888888888877765
No 409
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=44.83 E-value=3.5e+02 Score=27.45 Aligned_cols=212 Identities=16% Similarity=0.224 Sum_probs=97.3
Q ss_pred hhhHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHH
Q 003295 180 VQIADLLVHVYCTQFKNLGFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAI 259 (833)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 259 (833)
..++.-|++.|. |-..++++-..-|-..+ .|+.++.+.=.+++.++.-. .|.+|-. .++.+.
T Consensus 111 ~qvf~KliRRyk--yLeK~fE~e~~k~Llfl-k~F~e~Er~KLA~~Tal~l~--------------nGt~~~t-vl~~L~ 172 (412)
T KOG2297|consen 111 VQVFQKLIRRYK--YLEKNFENEMRKFLLFL-KLFEENERKKLAMLTALLLS--------------NGTLPAT-VLQSLL 172 (412)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHh--------------CCCCCHH-HHHHHH
Confidence 455667777664 22223333322222111 24555555544454444221 3444333 333333
Q ss_pred -HHHHhcCC-hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--
Q 003295 260 -NAFCKRGR-IEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKL-- 335 (833)
Q Consensus 260 -~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~-- 335 (833)
.-+.+.|- ..=|.++|...... ...|.++..+-+.+.-+.-+++| +|+-.+-......+...
T Consensus 173 ~d~LVkeGi~l~F~~~lFk~~~~E------k~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak~Ft~agL 238 (412)
T KOG2297|consen 173 NDNLVKEGIALSFAVKLFKEWLVE------KDINDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAKYFTDAGL 238 (412)
T ss_pred HhhHHHHhHHHHHHHHHHHHHHhh------ccHHHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHHHHhHhhH
Confidence 34445553 33467777776532 34567777775544433444433 56655544444333332
Q ss_pred ---------CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHH-HHHHhCCCCCChh----HHHHHHHH
Q 003295 336 ---------EKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIR-DDMVSKGMSPNSV----TFNSLIHG 401 (833)
Q Consensus 336 ---------g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~-~~m~~~g~~p~~~----~~~~li~~ 401 (833)
.....|.+-++.. |..-..+...+++..... ++|.+.+++ +.. .|..++++
T Consensus 239 ~elvey~~~q~~~~a~kElq~~--------------L~~q~s~e~p~~evi~~VKee~k~~nlP-e~eVi~ivWs~iMsa 303 (412)
T KOG2297|consen 239 KELVEYHRNQQSEGARKELQKE--------------LQEQVSEEDPVKEVILYVKEEMKRNNLP-ETEVIGIVWSGIMSA 303 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHhccCCCHHHHHHHHHHHHHhcCCC-CceEEeeeHhhhhHH
Confidence 2333333322222 222222333444544433 456555543 432 46655554
Q ss_pred HHhcCC-hhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHH
Q 003295 402 FCKSGQ-MDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSAL 447 (833)
Q Consensus 402 ~~~~g~-~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 447 (833)
---+.+ ---|.+.++. ...|..++.++|..|+.+-.+
T Consensus 304 veWnKkeelva~qalrh---------lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 304 VEWNKKEELVAEQALRH---------LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HhhchHHHHHHHHHHHH---------HHhhhHHHHHHhcCChHHHHH
Confidence 322211 1122233333 335788888888888877554
No 410
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=44.61 E-value=2.1e+02 Score=29.47 Aligned_cols=76 Identities=20% Similarity=0.350 Sum_probs=44.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhC---CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCh-hHHH
Q 003295 643 LIRAYCKIGNTTAAFRLSNDMKSR---GILPTSVTYS--SLIHGLCNIGLIEDAKCLFDEMRK-----EGLLPNV-ACYT 711 (833)
Q Consensus 643 li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~-~~~~ 711 (833)
++...-+.++.++|++.++++.+. .-.|+.+.|. .+...+...|+.+++.+++++..+ .|++|++ ..|+
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 344445556778888888777653 2244555543 344555667777788777777765 3666644 3344
Q ss_pred HHHHHHH
Q 003295 712 ALIGGYC 718 (833)
Q Consensus 712 ~li~~~~ 718 (833)
.+..-|.
T Consensus 161 ~lssqYy 167 (380)
T KOG2908|consen 161 SLSSQYY 167 (380)
T ss_pred HHHHHHH
Confidence 4544443
No 411
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=44.33 E-value=3.5e+02 Score=27.23 Aligned_cols=98 Identities=15% Similarity=0.218 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCCCHHHHHH-HHHHHHhcCChhhHHHHHHHHHHCCCCCCHH--
Q 003295 496 NTVTSNALIHGMCEAGNLKEAGKLLMEMLQ----RGLILDKVTYNT-LILGCCKDGKPEEGFKLKEDMIKRGIQPDNY-- 568 (833)
Q Consensus 496 ~~~~~~~li~~~~~~g~~~~A~~~l~~m~~----~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-- 568 (833)
-..++..+...||+-++.+.+.+++++..+ .|.+.|.....+ |.-.|....-+++.++..+.|++.|...+..
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 456778888899999998888887766544 355544432222 2223333444678888888888888654332
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 003295 569 --TYNLLLHGLCSLGKMEEAIELWEECKR 595 (833)
Q Consensus 569 --~~~~li~~~~~~g~~~~A~~~~~~~~~ 595 (833)
+|..+. +....++.+|-.++-+...
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 232221 2233567777777766554
No 412
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=43.97 E-value=2.3e+02 Score=25.00 Aligned_cols=66 Identities=12% Similarity=0.197 Sum_probs=36.5
Q ss_pred CCChhHHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 704 LPNVACYTALIGGYCKLGQ---MDEAESVLQEMASINIHPN--KITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 704 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
.++..+--.+..++.+..+ ..+.+.+++++.+.. +|. .....-|.-++.+.|+++++.++.+.+++
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 4455555556666666543 344556666666422 222 22333445566677777777777766666
No 413
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.03 E-value=6.3e+02 Score=29.89 Aligned_cols=129 Identities=12% Similarity=0.080 Sum_probs=59.3
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003295 506 GMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEE 585 (833)
Q Consensus 506 ~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 585 (833)
.+...|+.++...+-.-|.+ |..++..+++.+.+++|++++..-. +...+....- ......+.+
T Consensus 513 l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~------~~el~yk~ap-~Li~~~p~~ 576 (911)
T KOG2034|consen 513 LLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQR------NPELFYKYAP-ELITHSPKE 576 (911)
T ss_pred HHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhcc------chhhHHHhhh-HHHhcCcHH
Confidence 34445555555544433332 4556667777777777777665431 1111111111 111122333
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHcc---CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCCh
Q 003295 586 AIELWEECKRTVFGPDIYTYGVMIDGFCKA---DKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNT 653 (833)
Q Consensus 586 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 653 (833)
....|...... ........++..+.+. .....+...++-....-..-++..+|.++..|++..+-
T Consensus 577 tV~~wm~~~d~---~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~ 644 (911)
T KOG2034|consen 577 TVSAWMAQKDL---DPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERD 644 (911)
T ss_pred HHHHHHHcccc---CchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCcc
Confidence 33333333222 1112222233333333 23344444444444443445788888888888765543
No 414
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=42.95 E-value=42 Score=36.02 Aligned_cols=105 Identities=16% Similarity=0.032 Sum_probs=71.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHhcC
Q 003295 644 IRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSL-IHGLCNIGLIEDAKCLFDEMRKEGLLPNV-ACYTALIGGYCKLG 721 (833)
Q Consensus 644 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g 721 (833)
.+-+.+.+.++.|..++.+.++. .|+...|-.. ..++.+.+++..|..-+.++++. .|+. ..|---..++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHHHhHH
Confidence 44456678889999999998886 5555544333 46778888999998888888875 3432 33333344555666
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003295 722 QMDEAESVLQEMASINIHPNKITYTIMIGGYCK 754 (833)
Q Consensus 722 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 754 (833)
.+.+|...|+.... +.|+..-....+.-|-+
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 77888888887776 57877766666665543
No 415
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=42.34 E-value=3.3e+02 Score=26.36 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=15.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 003295 747 IMIGGYCKLGDMKEAAKLLNVMAEK 771 (833)
Q Consensus 747 ~li~~~~~~g~~~~A~~~~~~m~~~ 771 (833)
.++....+.|++++|.+.|.+++..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 4445556666666666666666654
No 416
>PRK13342 recombination factor protein RarA; Reviewed
Probab=41.98 E-value=4.9e+02 Score=28.27 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=25.3
Q ss_pred HHHHHHHHHh---cCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003295 535 YNTLILGCCK---DGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGL 577 (833)
Q Consensus 535 ~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 577 (833)
+..++.++.+ .++.+.|+.++..|++.|..|....-..++.++
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3344444443 467777888888888777666544444444333
No 417
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=41.96 E-value=53 Score=24.32 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=10.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHH
Q 003295 782 VFMDGHCKGGNVEEAFKVCDRML 804 (833)
Q Consensus 782 ~l~~~~~~~g~~~~A~~~~~~m~ 804 (833)
.++.+|...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445555555555555544443
No 418
>PRK10941 hypothetical protein; Provisional
Probab=41.34 E-value=2.7e+02 Score=28.11 Aligned_cols=74 Identities=8% Similarity=-0.062 Sum_probs=31.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHhhc
Q 003295 748 MIGGYCKLGDMKEAAKLLNVMAEKGISP-DSITYNVFMDGHCKGGNVEEAFKVCDRMLSE-GLSLDEITYTTLIDGWQ 823 (833)
Q Consensus 748 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~ 823 (833)
+-.+|.+.++++.|....+.++. +.| |+.-+.--+-.|.+.|.+..|..-++..++. .-.|+.......+..+.
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 33444445555555555555444 223 2223333344444455555555444444432 22333444444444443
No 419
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=41.21 E-value=4.9e+02 Score=28.04 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=18.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh
Q 003295 360 YNTLIDGYCKKGNISEALKIRDDMVS 385 (833)
Q Consensus 360 y~~li~~~~~~g~~~~A~~~~~~m~~ 385 (833)
.|-++.-|...|+-.+|.+..+++..
T Consensus 217 In~~l~eyv~~getrea~rciR~L~v 242 (645)
T KOG0403|consen 217 INGNLIEYVEIGETREACRCIRELGV 242 (645)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhCC
Confidence 34566677888888888887777654
No 420
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.16 E-value=36 Score=34.76 Aligned_cols=118 Identities=14% Similarity=0.086 Sum_probs=80.3
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHhcCChhHH
Q 003295 648 CKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNV-ACYTALIGGYCKLGQMDEA 726 (833)
Q Consensus 648 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A 726 (833)
...|.++.|++.|...+..+ ++....|..-.+++.+.++...|+.-++..++ +.||. .-|-.-..+..-.|++++|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHH
Confidence 34688999999999888875 55666777777888888899999988888887 45654 2343334445567999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 727 ESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 727 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
...+....+.++.+....| +-...-..+..++-...+++..+
T Consensus 202 a~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHH
Confidence 9999998887765544433 23333444555555555555544
No 421
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=40.52 E-value=7.7e+02 Score=30.14 Aligned_cols=261 Identities=10% Similarity=-0.010 Sum_probs=142.9
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHH
Q 003295 530 LDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMI 609 (833)
Q Consensus 530 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 609 (833)
+|...-...+..+.+.+. +++...+..+++. +|...-...+.++.+.+........+..+... +|..+-...+
T Consensus 633 ~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~ 705 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAAL 705 (897)
T ss_pred CCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHH
Confidence 366665666666666554 3455555555532 24433344444444432211122233333332 4555555555
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 003295 610 DGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIE 689 (833)
Q Consensus 610 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 689 (833)
..+...+..+ .. .+-+.++ .+|...-...+.++.+.+..+. +..... .++...-...+.++...+..+
T Consensus 706 ~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 706 DVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhcccc
Confidence 6655433211 11 2222322 3466666666777766554432 222222 345555556666776666543
Q ss_pred H-HHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003295 690 D-AKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVM 768 (833)
Q Consensus 690 ~-A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 768 (833)
. +...+..+.+ .+|...-...+.++.+.|..+.+...+..+.+ .++...-...+.++...+. +++...+..+
T Consensus 774 ~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~ 846 (897)
T PRK13800 774 APAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEA 846 (897)
T ss_pred chhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHH
Confidence 2 3455555554 46677777888888888886666555555554 4565555667777777765 5677777777
Q ss_pred HHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 003295 769 AEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSLDEITYTTLIDGW 822 (833)
Q Consensus 769 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 822 (833)
++ .|+..+-..-+.++.+.+.-..+...+..+++ .+|...-..-..++
T Consensus 847 L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~---D~d~~Vr~~A~~aL 894 (897)
T PRK13800 847 LT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT---DSDADVRAYARRAL 894 (897)
T ss_pred hc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence 65 46777777777777775434567777777776 44544444444444
No 422
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=40.39 E-value=2.7e+02 Score=29.79 Aligned_cols=55 Identities=16% Similarity=0.130 Sum_probs=39.9
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHHC
Q 003295 646 AYCKIGNTTAAFRLSNDMKSRGILPTSV--TYSSLIHGLC--NIGLIEDAKCLFDEMRKE 701 (833)
Q Consensus 646 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~--~~g~~~~A~~~~~~m~~~ 701 (833)
.+...+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445789999999999999987 555554 3444445543 466788999999988764
No 423
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=40.36 E-value=1.2e+02 Score=28.68 Aligned_cols=32 Identities=25% Similarity=0.224 Sum_probs=19.6
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 774 SPDSITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 774 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
.|++.+|..++.++...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666666666666666666666666665555
No 424
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=40.09 E-value=3.1e+02 Score=25.83 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=8.6
Q ss_pred HcCChHHHHHHHHHHHh
Q 003295 369 KKGNISEALKIRDDMVS 385 (833)
Q Consensus 369 ~~g~~~~A~~~~~~m~~ 385 (833)
+.|++++|.+.++-|..
T Consensus 133 ~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 133 RKGSFEEAERFLKFMEK 149 (204)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 34555555555555443
No 425
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=40.04 E-value=1.1e+03 Score=31.75 Aligned_cols=151 Identities=12% Similarity=0.114 Sum_probs=94.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHH----HHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 003295 327 ILINGLIKLEKFDDANFVLKEM----SVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGF 402 (833)
Q Consensus 327 ~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 402 (833)
++..+=.+.+.+.+|...++.- .+. .-...-|-.+...|...+++|....+...-.. .|+ ....|-..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHH
Confidence 4555666788999999999983 322 11234455566699999999988887764221 233 22345567
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 003295 403 CKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEAT 482 (833)
Q Consensus 403 ~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 482 (833)
...|++..|...|+.+.+.+. +....++.++......|.++..+-..+....+...-.+..++.-+.+--+.++++...
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 788999999999999998642 2366777777777777777777665444433322211222333334445666666655
Q ss_pred HHHH
Q 003295 483 ELCF 486 (833)
Q Consensus 483 ~~~~ 486 (833)
....
T Consensus 1539 ~~l~ 1542 (2382)
T KOG0890|consen 1539 SYLS 1542 (2382)
T ss_pred hhhh
Confidence 5433
No 426
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=39.09 E-value=51 Score=19.72 Aligned_cols=12 Identities=8% Similarity=0.451 Sum_probs=5.3
Q ss_pred hhHHHHHHHHhh
Q 003295 234 VQKGIEVFETMC 245 (833)
Q Consensus 234 ~~~A~~~~~~~~ 245 (833)
.+.|..+|++++
T Consensus 3 ~~~~r~i~e~~l 14 (33)
T smart00386 3 IERARKIYERAL 14 (33)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 427
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.99 E-value=32 Score=29.91 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=10.9
Q ss_pred CChhHHHHHHHHhh-cCCCCCH
Q 003295 232 NEVQKGIEVFETMC-RGVSPDV 252 (833)
Q Consensus 232 g~~~~A~~~~~~~~-~~~~~~~ 252 (833)
|.-.+|..+|+.|+ +|.+||.
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc
Confidence 44445555555555 4555543
No 428
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=38.83 E-value=2.1e+02 Score=23.17 Aligned_cols=53 Identities=9% Similarity=0.099 Sum_probs=26.9
Q ss_pred hhhccCHHHHHHHHHHH----HhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 003295 193 QFKNLGFGYAIDVFSIF----SSKGIFPS----LKTCNFLLNSLVKANEVQKGIEVFETMC 245 (833)
Q Consensus 193 ~~~~~~~~~A~~~f~~~----~~~~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 245 (833)
..+.+++..|++.+.+. ...+.... ..+.-.+.......|+.++|...+++.+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34567777775544333 33322211 1222234444556677777777777665
No 429
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=38.40 E-value=4.8e+02 Score=27.14 Aligned_cols=117 Identities=7% Similarity=0.046 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHH
Q 003295 620 EGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCN---IGLIEDAKCLFD 696 (833)
Q Consensus 620 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~ 696 (833)
.-+.++++.++.++ -+...+..++..+.+..+.++..+.++++.... +-+...|...++.... .-.+++...+|.
T Consensus 49 ~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 34555566555544 255566666666666666666666666666652 2244455555444332 123444444444
Q ss_pred HHHHC------CC----CCChh-------HHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003295 697 EMRKE------GL----LPNVA-------CYTALIGGYCKLGQMDEAESVLQEMASINI 738 (833)
Q Consensus 697 ~m~~~------g~----~p~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 738 (833)
+.++. +. .+-.. ++.-+...+..+|..+.|..+++.+.+.++
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 44321 11 01111 122222334467788888888887777544
No 430
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.97 E-value=4.8e+02 Score=28.84 Aligned_cols=37 Identities=11% Similarity=0.089 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003295 741 NKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDS 777 (833)
Q Consensus 741 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 777 (833)
+...+..++.+....+....|+.++.++.+.|..|..
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYK 283 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHH
Confidence 4455556666555555566777778888777765543
No 431
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=37.72 E-value=3.5e+02 Score=25.43 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=15.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC
Q 003295 502 ALIHGMCEAGNLKEAGKLLMEMLQR 526 (833)
Q Consensus 502 ~li~~~~~~g~~~~A~~~l~~m~~~ 526 (833)
+++-.|.+..++.+..++++.|.+.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666677777777776654
No 432
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=37.00 E-value=5.4e+02 Score=27.32 Aligned_cols=135 Identities=12% Similarity=0.039 Sum_probs=69.9
Q ss_pred CChHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHHcCCCCccccCCCcchHHHHHHHHhhhh---
Q 003295 95 VNPKTALKFFYFASQSCNFRFTVRSYCLLIRLLLFSNLLSPARLLLIRLIDGKMPVLYASNPSIRHIEIASQMVDLN--- 171 (833)
Q Consensus 95 ~~~~~a~~ff~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 171 (833)
.||..-..+. .. ++..++++..+..++...|..+.|..++.+.+-..... .+..+......+.
T Consensus 24 ~Dp~~l~~ll---~~---~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~--------~~~~F~~~~~~~~~g~ 89 (360)
T PF04910_consen 24 HDPNALINLL---QK---NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERA--------FHPSFSPFRSNLTSGN 89 (360)
T ss_pred cCHHHHHHHH---HH---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--------HHHHhhhhhcccccCc
Confidence 3777666554 22 23578899999999999999999999999875421000 0000000000000
Q ss_pred --cccCCcchhhhHHHHHHHHHH-hhhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCChhHHHHHHHHh
Q 003295 172 --VTSEPALGVQIADLLVHVYCT-QFKNLGFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLV-KANEVQKGIEVFETM 244 (833)
Q Consensus 172 --~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~-~~g~~~~A~~~~~~~ 244 (833)
..++...+...+-.| ..|.. ..++|-++-|++..+.+...++.-|+......|+-|+ +.++++--+++++..
T Consensus 90 ~rL~~~~~eNR~fflal-~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 90 CRLDYRRPENRQFFLAL-FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred cccCCccccchHHHHHH-HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 001111111222222 22222 2255666666666666666665555665555665554 455555555555543
No 433
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=36.49 E-value=4.2e+02 Score=25.90 Aligned_cols=91 Identities=21% Similarity=0.267 Sum_probs=59.7
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHh-CC-----------CCCCHHHHHHHHHHHHhcCCHHH
Q 003295 693 CLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMAS-IN-----------IHPNKITYTIMIGGYCKLGDMKE 760 (833)
Q Consensus 693 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g-----------~~p~~~~~~~li~~~~~~g~~~~ 760 (833)
++.+-....++.-+..-..+++ +...|++.+|+..++.-.. .| -.|.+.....++..| ..+++++
T Consensus 180 Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~ 256 (333)
T KOG0991|consen 180 RLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDE 256 (333)
T ss_pred HHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHH
Confidence 3333334445555555555554 4478999999998887664 22 156666666777655 4578999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003295 761 AAKLLNVMAEKGISPDSITYNVFMDGH 787 (833)
Q Consensus 761 A~~~~~~m~~~g~~p~~~~~~~l~~~~ 787 (833)
|.+.+.++.+.|+.|... .+.+.+.+
T Consensus 257 A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 257 ALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred HHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 999999999999888543 23344444
No 434
>PHA03100 ankyrin repeat protein; Provisional
Probab=36.02 E-value=6.4e+02 Score=27.88 Aligned_cols=17 Identities=12% Similarity=0.010 Sum_probs=8.2
Q ss_pred HHHHHhcCChhHHHHHH
Q 003295 225 LNSLVKANEVQKGIEVF 241 (833)
Q Consensus 225 l~~~~~~g~~~~A~~~~ 241 (833)
+...++.|+.+-+..++
T Consensus 39 L~~A~~~~~~~ivk~Ll 55 (480)
T PHA03100 39 LYLAKEARNIDVVKILL 55 (480)
T ss_pred hhhhhccCCHHHHHHHH
Confidence 34445556655444443
No 435
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=36.00 E-value=1.1e+02 Score=21.13 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=17.3
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 003295 263 CKRGRIEDAIGLFTKMEELGIAPNVVTYNNII 294 (833)
Q Consensus 263 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 294 (833)
-+.|-..++..++++|.+.|+.-+...|..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34555555666666665555555555444443
No 436
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=35.70 E-value=6.1e+02 Score=27.56 Aligned_cols=121 Identities=18% Similarity=0.188 Sum_probs=61.0
Q ss_pred HhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHH
Q 003295 229 VKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFH 308 (833)
Q Consensus 229 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 308 (833)
...|++..|-.-....++..+.++.........+...|+++.+...+....+. +.....+...++....+.|++++|..
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34566665555444444322222222222333455567777777666655442 22344555666666666677777777
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003295 309 LKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVR 351 (833)
Q Consensus 309 ~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 351 (833)
+-+-|....++.. .....-...--..|-++++...+++....
T Consensus 379 ~a~~~l~~eie~~-ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 379 TAEMMLSNEIEDE-EVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHhccccCCh-hheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 6666665443321 11112222223345566666666665543
No 437
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=35.48 E-value=1.3e+02 Score=20.86 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=13.2
Q ss_pred HcCChHHHHHHHHHHHhCCCCCChhHHH
Q 003295 369 KKGNISEALKIRDDMVSKGMSPNSVTFN 396 (833)
Q Consensus 369 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 396 (833)
+.|-++++..++++|.+.|+.-+...|.
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~ 41 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIE 41 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHH
Confidence 4444445555555555554444444443
No 438
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=35.35 E-value=4.8e+02 Score=26.29 Aligned_cols=97 Identities=13% Similarity=0.167 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHh----CCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh--
Q 003295 636 NPVVYNTLIRAYCKIGNTTAAFRLSNDMKS----RGILPTSVTYS-SLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVA-- 708 (833)
Q Consensus 636 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-- 708 (833)
....+..+..-|++.++.+.+++...+..+ .|.+.|..... .|.-.|....-+++-++..+.|+++|...+..
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 345566667777777777777766655443 35554543221 12223334444667777777777776555432
Q ss_pred --HHHHHHHHHHhcCChhHHHHHHHHHH
Q 003295 709 --CYTALIGGYCKLGQMDEAESVLQEMA 734 (833)
Q Consensus 709 --~~~~li~~~~~~g~~~~A~~~~~~m~ 734 (833)
+|..+- +....++.+|-.++....
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHHh
Confidence 222221 112346677766666554
No 439
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=35.03 E-value=8.4e+02 Score=29.26 Aligned_cols=52 Identities=19% Similarity=0.075 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhcCCC
Q 003295 741 NKITYTIMIGGYCKLGDMKEAAKLLNVMAE-KGISPDSITYNVFMDGHCKGGN 792 (833)
Q Consensus 741 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~g~ 792 (833)
|..+|..-.+-+...|++..|.+++.++.+ .|-.++...|..++..+...|-
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw 1282 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGW 1282 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCc
Confidence 344444445555566667777777666665 3334455555555555544443
No 440
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=34.84 E-value=4.3e+02 Score=27.36 Aligned_cols=77 Identities=19% Similarity=0.278 Sum_probs=54.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC---CCccCHHHHHH--HHHHHHHcCChHHHHHHHHHHHh-----CCCCCCHHH-
Q 003295 606 GVMIDGFCKADKIEEGETLFNEMISK---KMELNPVVYNT--LIRAYCKIGNTTAAFRLSNDMKS-----RGILPTSVT- 674 (833)
Q Consensus 606 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~- 674 (833)
..++...-+.++.++|.+.++++.+. .-.|+.+.|.. ....+...|+..++.+.+++..+ .+++|++.+
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 34455566778999999999999764 23456776654 45566678999999999998887 577775554
Q ss_pred HHHHHHHH
Q 003295 675 YSSLIHGL 682 (833)
Q Consensus 675 ~~~li~~~ 682 (833)
|..+-.-|
T Consensus 159 fY~lssqY 166 (380)
T KOG2908|consen 159 FYSLSSQY 166 (380)
T ss_pred HHHHHHHH
Confidence 44444444
No 441
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=34.43 E-value=5.4e+02 Score=26.55 Aligned_cols=81 Identities=11% Similarity=-0.023 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHCCC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHH
Q 003295 338 FDDANFVLKEMSVRGF----VPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAEN 413 (833)
Q Consensus 338 ~~~A~~~~~~m~~~g~----~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 413 (833)
.++|.+.|++....+. ..+......+.....+.|+.++-..+++..... ++......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 4566667777665311 223334444555555666655544444444432 355556666777766667666666
Q ss_pred HHHHHHHC
Q 003295 414 ALEEMLSR 421 (833)
Q Consensus 414 ~l~~~~~~ 421 (833)
+++.....
T Consensus 223 ~l~~~l~~ 230 (324)
T PF11838_consen 223 LLDLLLSN 230 (324)
T ss_dssp HHHHHHCT
T ss_pred HHHHHcCC
Confidence 77766664
No 442
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.09 E-value=6.4e+02 Score=30.92 Aligned_cols=79 Identities=14% Similarity=0.155 Sum_probs=43.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh----hhH
Q 003295 289 TYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPS----LITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNY----VVY 360 (833)
Q Consensus 289 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~y 360 (833)
-|-.+++.+-+.+-.|++.++-..+++. +++| ..+++++.+.....|.+.+|...+-. .||. ...
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcL 1057 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCL 1057 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHH
Confidence 3566777777777777777776666653 2222 23455666666666666655543322 2332 234
Q ss_pred HHHHHHHHHcCChH
Q 003295 361 NTLIDGYCKKGNIS 374 (833)
Q Consensus 361 ~~li~~~~~~g~~~ 374 (833)
.-|+-.++.+|+++
T Consensus 1058 RqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1058 RQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHHHhccchH
Confidence 44555666666543
No 443
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=34.08 E-value=1.8e+02 Score=31.22 Aligned_cols=62 Identities=16% Similarity=0.253 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHc--CC-----CCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 003295 253 FLFSTAINAFCKRGRIEDAIGLFTKMEEL--GI-----APNVVTYNNIIHGLCRNGRLYEAFHLKEKMV 314 (833)
Q Consensus 253 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 314 (833)
++...+++..|-.|++..|+++++.+.-. ++ .-.+.+|--++-+|.-.+|+.+|.+.|....
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777788888888777765321 10 1123345556666666777777777776554
No 444
>PRK10941 hypothetical protein; Provisional
Probab=34.06 E-value=4e+02 Score=26.86 Aligned_cols=59 Identities=10% Similarity=0.081 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003295 222 NFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEE 280 (833)
Q Consensus 222 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (833)
+.+-.+|.+.++++.|+.+.+.++.-.|.|.+-+.--.-.|.+.|.+..|..=++...+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 33444455555555555555555533344444454455555555555555555555544
No 445
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=33.84 E-value=2.5e+02 Score=22.54 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=6.3
Q ss_pred CChhhHHHHHHHHH
Q 003295 546 GKPEEGFKLKEDMI 559 (833)
Q Consensus 546 g~~~~A~~~~~~m~ 559 (833)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 446
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.89 E-value=1e+03 Score=29.35 Aligned_cols=53 Identities=9% Similarity=0.116 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHH
Q 003295 640 YNTLIRAYCKIGNTTAAFRLSNDMKSRGILPT----SVTYSSLIHGLCNIGLIEDAKC 693 (833)
Q Consensus 640 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~ 693 (833)
|..+++.+-+.+..+.+.++-...++. ++++ ..+++.+.+.....|.+-+|..
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ 1042 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYK 1042 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHH
Confidence 444555555555555555555554443 1111 1234444444445555444443
No 447
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=31.75 E-value=1.9e+02 Score=32.51 Aligned_cols=46 Identities=13% Similarity=0.240 Sum_probs=23.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHhh---cCCCCCHHHHHHHHHHHHhcCCh
Q 003295 223 FLLNSLVKANEVQKGIEVFETMC---RGVSPDVFLFSTAINAFCKRGRI 268 (833)
Q Consensus 223 ~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~ 268 (833)
+|+.+|...|++-.+..+++... +|...=..-+|..|+.+.+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 45555555555555555555554 23333334455555555555544
No 448
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=31.31 E-value=5.1e+02 Score=28.88 Aligned_cols=60 Identities=8% Similarity=0.154 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003295 222 NFLLNSLVKANEVQKGIEVFETMCRGVSPD--VFLFSTAINAFCKRGRIEDAIGLFTKMEEL 281 (833)
Q Consensus 222 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (833)
..++.-|.+.+++++|..++..|--...+. -...+.+.+.+.++.--.+....++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 356667888888888888888886211111 233445556666665555566666666543
No 449
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=30.82 E-value=3.1e+02 Score=30.98 Aligned_cols=73 Identities=21% Similarity=0.180 Sum_probs=45.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCChhHHHHH
Q 003295 642 TLIRAYCKIGNTTAAFRLSNDMKSR--GILPTSVTYSSLIHGLCNIGLIE------DAKCLFDEMRKEGLLPNVACYTAL 713 (833)
Q Consensus 642 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~~~~~l 713 (833)
++..+|...|++-.+.++++.+... |-+.-...||..|+...+.|.++ .|.++++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 6777888888888888888877654 22333445677777777777643 3444444444 34466677666
Q ss_pred HHHH
Q 003295 714 IGGY 717 (833)
Q Consensus 714 i~~~ 717 (833)
+.+-
T Consensus 110 ~~~s 113 (1117)
T COG5108 110 CQAS 113 (1117)
T ss_pred HHhh
Confidence 6543
No 450
>PRK09857 putative transposase; Provisional
Probab=30.28 E-value=3.1e+02 Score=28.08 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=16.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHCCCCCC
Q 003295 782 VFMDGHCKGGNVEEAFKVCDRMLSEGLSLD 811 (833)
Q Consensus 782 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 811 (833)
+++.-+...|.-+++.++.++|+..|+.++
T Consensus 245 TiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 245 TIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344444444444556666666666666655
No 451
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=30.25 E-value=2.9e+02 Score=22.25 Aligned_cols=54 Identities=15% Similarity=0.060 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCC
Q 003295 739 HPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISP-DSITYNVFMDGHCKGGN 792 (833)
Q Consensus 739 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~ 792 (833)
+.|...-..+...+...|++++|++.+-++++..-.. +...-..|+..+...|.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4445556666666777777777777766666543221 22334444444444444
No 452
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=30.13 E-value=3.7e+02 Score=23.37 Aligned_cols=43 Identities=21% Similarity=0.299 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCCHHHHHHHHH
Q 003295 759 KEAAKLLNVMAEKGISPDS-ITYNVFMDGHCKGGNVEEAFKVCD 801 (833)
Q Consensus 759 ~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 801 (833)
+++.++|..|..+|+--.. ..|......+...|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3355666666666654433 455666666666777777766664
No 453
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=30.05 E-value=9.3e+02 Score=27.99 Aligned_cols=47 Identities=23% Similarity=0.211 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 003295 549 EEGFKLKEDMIKRGIQPDN---YTYNLLLHGLCSLGKMEEAIELWEECKR 595 (833)
Q Consensus 549 ~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~ 595 (833)
++-...+++|..+--.|++ .+...++-.|....+++...++.+.+++
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~ 229 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKR 229 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHh
Confidence 3444556666665434443 2333344445555566666666666655
No 454
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=29.95 E-value=3e+02 Score=22.22 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003295 249 SPDVFLFSTAINAFCKRGRIEDAIGLFTKMEEL 281 (833)
Q Consensus 249 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (833)
|.|...-..+...+...|++++|++.+-++.+.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 444455555555555555555555555555543
No 455
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=29.88 E-value=7.2e+02 Score=26.66 Aligned_cols=86 Identities=12% Similarity=0.064 Sum_probs=47.1
Q ss_pred CCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH--------HHhcCCHHHHHHHHHHHHHcCC
Q 003295 702 GLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGG--------YCKLGDMKEAAKLLNVMAEKGI 773 (833)
Q Consensus 702 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~ 773 (833)
.+.||.++.|.+...++..-..+-...+|+-..+.+ .|=.+.+.++|-. -.+...-++++++++.|...=-
T Consensus 178 kitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~ 256 (669)
T KOG3636|consen 178 KITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLS 256 (669)
T ss_pred ccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcc
Confidence 467777777777777766666777777777666654 3333333332211 1133445677777777654211
Q ss_pred CCCHHHHHHHHHHHh
Q 003295 774 SPDSITYNVFMDGHC 788 (833)
Q Consensus 774 ~p~~~~~~~l~~~~~ 788 (833)
..|..-+-.|...|+
T Consensus 257 ~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 257 VEDVPDFFSLAQYYS 271 (669)
T ss_pred cccchhHHHHHHHHh
Confidence 224444555555444
No 456
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=29.88 E-value=3.9e+02 Score=23.60 Aligned_cols=67 Identities=12% Similarity=0.191 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--ChhHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003295 669 LPTSVTYSSLIHGLCNIG---LIEDAKCLFDEMRKEGLLP--NVACYTALIGGYCKLGQMDEAESVLQEMASI 736 (833)
Q Consensus 669 ~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 736 (833)
.++..+--.+..++.+.. ++.+.+.++++..+.. .| .......|.-++.+.++++++.++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 344455445555555543 3556677777777522 23 2233344556677777777777777777763
No 457
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=29.64 E-value=7.8e+02 Score=26.98 Aligned_cols=107 Identities=19% Similarity=0.165 Sum_probs=63.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHC---CC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-------CCCCCCH---
Q 003295 471 GLCKNGKQAEATELCFRLFEK---GF--TV---NTVTSNALIHGMCEAGNLKEAGKLLMEMLQ-------RGLILDK--- 532 (833)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~~~~---g~--~~---~~~~~~~li~~~~~~g~~~~A~~~l~~m~~-------~g~~~~~--- 532 (833)
.+.-.|++.+|..++...--. |. .| .-..||.|...+.+.|.+..+..+|.+..+ .|+.|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 345567777777766543221 21 11 122356676666677777666666666553 3444322
Q ss_pred --------HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003295 533 --------VTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCS 579 (833)
Q Consensus 533 --------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 579 (833)
.+|| ..-.|...|++-.|.+-|.+.... +..++..|--+..+|..
T Consensus 329 ls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 2333 233466788888888888877765 44577778878777754
No 458
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=29.39 E-value=5.5e+02 Score=25.12 Aligned_cols=135 Identities=16% Similarity=0.196 Sum_probs=71.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003295 608 MIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGL 687 (833)
Q Consensus 608 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 687 (833)
-+..|.+.-++.-|....+++.+- ..+ ...+--|.+..+..---++.+-....++.-+......++ +...|+
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEP-----IQS-RCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GD 207 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEP-----IQS-RCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGD 207 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhh-----HHh-hhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccch
Confidence 344555555665565555555421 111 112222333333322223333333334444444444443 346788
Q ss_pred HHHHHHHHHHHHHC-C-----------CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003295 688 IEDAKCLFDEMRKE-G-----------LLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGY 752 (833)
Q Consensus 688 ~~~A~~~~~~m~~~-g-----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 752 (833)
+.+|+.-++.-... | -.|.+.....++.. |..+++++|.+++.++-+.|+.|... .+++.+++
T Consensus 208 MRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~-~~~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 208 MRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQA-CLKRNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred HHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHH-HHhccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 88887777665432 1 14556555556654 45688999999999999999887543 33444443
No 459
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=28.87 E-value=2.7e+02 Score=27.64 Aligned_cols=58 Identities=26% Similarity=0.292 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003295 747 IMIGGYCKLGDMKEAAKLLNVMAE----KGIS-PDSITYNVFMDGHCKGGNVEEAFKVCDRML 804 (833)
Q Consensus 747 ~li~~~~~~g~~~~A~~~~~~m~~----~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 804 (833)
.+..-|.+.|++++|.++|+.+.. .|.. +...+...+..+..+.|+.++.+.+.-+|.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 445556666666666666666532 1221 123444555556666666666666555443
No 460
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=27.89 E-value=3.2e+02 Score=21.94 Aligned_cols=36 Identities=17% Similarity=0.318 Sum_probs=18.0
Q ss_pred HcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChh
Q 003295 369 KKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMD 409 (833)
Q Consensus 369 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 409 (833)
..|+.+.|.+++..+. +| |+ .|..++.++...|.-+
T Consensus 48 ~~g~~~~ar~LL~~L~-rg--~~--aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QK--EG--WFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC--Cc--HHHHHHHHHHHcCchh
Confidence 3455555666665555 32 12 3445555555555433
No 461
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=27.74 E-value=8e+02 Score=26.51 Aligned_cols=60 Identities=17% Similarity=0.322 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC
Q 003295 746 TIMIGGYCKLGDMKEAAKLLNVMAEKGIS--PDSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGL 808 (833)
Q Consensus 746 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 808 (833)
..|+.-|...|+..+|...++++ |.+ -..+++.+++.+..+.|+-..-..++++....|+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeL---gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKEL---GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHh---CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 45666777777777777766653 221 1345677777777777776666666666655443
No 462
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=27.72 E-value=1.1e+03 Score=28.25 Aligned_cols=71 Identities=14% Similarity=0.021 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCH
Q 003295 688 IEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMAS-INIHPNKITYTIMIGGYCKLGDM 758 (833)
Q Consensus 688 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~ 758 (833)
.++-.+.|.++.+---.-|..++..-...+...|++..|.+++.++.+ .|-.++...|..++..+...|.-
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~ 1283 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN 1283 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch
Confidence 344445555555431123444454445555566777777777777664 34455666666666666666644
No 463
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=27.69 E-value=4.6e+02 Score=25.45 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=11.7
Q ss_pred HHHHHHcCChHHHHHHHHHHH
Q 003295 364 IDGYCKKGNISEALKIRDDMV 384 (833)
Q Consensus 364 i~~~~~~g~~~~A~~~~~~m~ 384 (833)
|....+.|++++|.+..+..-
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHhccHHHHHHHHHHhC
Confidence 444455666666666555543
No 464
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=27.57 E-value=1.1e+02 Score=30.90 Aligned_cols=30 Identities=30% Similarity=0.390 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003295 745 YTIMIGGYCKLGDMKEAAKLLNVMAEKGIS 774 (833)
Q Consensus 745 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 774 (833)
|+..|..-.+.||+++|+++++++.+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345555555555555555555555555543
No 465
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=27.56 E-value=1e+02 Score=31.12 Aligned_cols=28 Identities=25% Similarity=0.177 Sum_probs=13.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 003295 326 SILINGLIKLEKFDDANFVLKEMSVRGF 353 (833)
Q Consensus 326 ~~li~~~~~~g~~~~A~~~~~~m~~~g~ 353 (833)
+.-|....+.||+++|+.+++|..+.|.
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444444555555555555555544443
No 466
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=27.39 E-value=3.4e+02 Score=29.64 Aligned_cols=22 Identities=14% Similarity=0.037 Sum_probs=15.6
Q ss_pred HhcCCCHHHHHHHHHHHHHCCC
Q 003295 787 HCKGGNVEEAFKVCDRMLSEGL 808 (833)
Q Consensus 787 ~~~~g~~~~A~~~~~~m~~~g~ 808 (833)
|...|.-.++-..|++|...|-
T Consensus 403 wlg~~eR~~~~l~fNe~V~~Ge 424 (545)
T TIGR01228 403 WLGYGERAKLGLAINEMVRSGE 424 (545)
T ss_pred hcCccHHHHHHHHHHHHHHcCC
Confidence 3445666677778899998873
No 467
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=27.14 E-value=7.9e+02 Score=26.22 Aligned_cols=19 Identities=16% Similarity=-0.064 Sum_probs=9.1
Q ss_pred hcCChhHHHHHHHHHHHCC
Q 003295 334 KLEKFDDANFVLKEMSVRG 352 (833)
Q Consensus 334 ~~g~~~~A~~~~~~m~~~g 352 (833)
+.+++..|.++|+++..+.
T Consensus 142 n~~dy~aA~~~~~~L~~r~ 160 (380)
T TIGR02710 142 NAFDYLFAHARLETLLRRL 160 (380)
T ss_pred HhcChHHHHHHHHHHHhcc
Confidence 3444455555555554443
No 468
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.31 E-value=7.8e+02 Score=25.87 Aligned_cols=55 Identities=15% Similarity=0.097 Sum_probs=27.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhHHHHHH----HHHHhcCChhHHHHHHHHHHhCC
Q 003295 683 CNIGLIEDAKCLFDEMRKEGLLPNVACYTALI----GGYCKLGQMDEAESVLQEMASIN 737 (833)
Q Consensus 683 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g 737 (833)
.+-++..-|......+.++.+.--..+|.+|- .-....+.-++|.+..-+|.+.|
T Consensus 288 ~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 288 TKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 34455555666666665544333334444432 22234455666666666666543
No 469
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=25.89 E-value=2.2e+02 Score=21.38 Aligned_cols=49 Identities=24% Similarity=0.232 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 003295 495 VNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCK 544 (833)
Q Consensus 495 ~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~ 544 (833)
+....++.++..+++..-.++++..+.++.+.|.. +..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666653 55555555554443
No 470
>PRK09857 putative transposase; Provisional
Probab=25.79 E-value=4.8e+02 Score=26.72 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=39.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003295 712 ALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPD 776 (833)
Q Consensus 712 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 776 (833)
.++.-..+.|+.++-.++++.+.+. .+.......++..-+.+.|.-+++.++..+|...|+.++
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3444334556666666666666554 233344445666667777777778888888888776654
No 471
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=25.01 E-value=5.4e+02 Score=26.81 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 003295 339 DDANFVLKEMSVRGFVPNY----VVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFC 403 (833)
Q Consensus 339 ~~A~~~~~~m~~~g~~p~~----~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 403 (833)
+++..+++++... .|+. --|-+++......|.++..+.+|++.+..|..|=...-.++++.+-
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3445555555544 3442 3567777777778888888888888888877776666665655543
No 472
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=24.95 E-value=2.2e+02 Score=21.12 Aligned_cols=14 Identities=14% Similarity=0.302 Sum_probs=5.1
Q ss_pred cCChhHHHHHHHHH
Q 003295 265 RGRIEDAIGLFTKM 278 (833)
Q Consensus 265 ~g~~~~A~~~~~~m 278 (833)
.|++=+|-++++++
T Consensus 12 ~g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 12 AGDFFEAHEVLEEL 25 (62)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred CCCHHHhHHHHHHH
Confidence 33333444444333
No 473
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.72 E-value=3.9e+02 Score=22.03 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=9.7
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 003295 748 MIGGYCKLGDMKEAAKLLNV 767 (833)
Q Consensus 748 li~~~~~~g~~~~A~~~~~~ 767 (833)
|.-.|...|+-+.|.+-|+.
T Consensus 78 LGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 78 LGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHhhcCChHHHHHHHHH
Confidence 33344555555555555444
No 474
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=24.48 E-value=3e+02 Score=27.30 Aligned_cols=57 Identities=14% Similarity=0.164 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 003295 677 SLIHGLCNIGLIEDAKCLFDEMRKE----GL-LPNVACYTALIGGYCKLGQMDEAESVLQEM 733 (833)
Q Consensus 677 ~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 733 (833)
.+...|.+.|++++|.++|+.+... |. .+...+...+..++.+.|+.++...+.-++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4455566666666666666665321 11 112233344445555555555555444333
No 475
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=23.75 E-value=5.1e+02 Score=22.80 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003295 741 NKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGI 773 (833)
Q Consensus 741 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 773 (833)
|.+....+++ +...|+++.|+.+..-+++.|+
T Consensus 48 d~Vl~~~mvW-~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 48 DDVLMTVMVW-LFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred CchHHhhHhh-hhcccCHHHHHHHHHHHHHcCC
Confidence 3333333333 3456666666666666666554
No 476
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=23.51 E-value=3.4e+02 Score=24.29 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=14.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCccc
Q 003295 398 LIHGFCKSGQMDNAENALEEMLSRGLSINQGA 429 (833)
Q Consensus 398 li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~ 429 (833)
++..+.+.++.-.|.++++++.+.+...+..|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 33444444444445555555544444433333
No 477
>PRK13342 recombination factor protein RarA; Reviewed
Probab=23.45 E-value=9.7e+02 Score=25.96 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=11.9
Q ss_pred CChHHHHHHHHHHHhCCCCCCHH
Q 003295 651 GNTTAAFRLSNDMKSRGILPTSV 673 (833)
Q Consensus 651 g~~~~A~~~~~~m~~~~~~p~~~ 673 (833)
++.+.|+..+..|.+.|..|...
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i 266 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFI 266 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHH
Confidence 45555555555555555444433
No 478
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=23.38 E-value=4.8e+02 Score=24.45 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=12.7
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 003295 715 GGYCKLGQMDEAESVLQEMAS 735 (833)
Q Consensus 715 ~~~~~~g~~~~A~~~~~~m~~ 735 (833)
-.|.+.|.+++|.+++++..+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 445566666666666666654
No 479
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=23.03 E-value=6.5e+02 Score=23.80 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=12.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 003295 398 LIHGFCKSGQMDNAENALEEMLS 420 (833)
Q Consensus 398 li~~~~~~g~~~~A~~~l~~~~~ 420 (833)
++-.|-+.-+|.+.+++++.|.+
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~e 160 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHE 160 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666655554
No 480
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=22.91 E-value=5.2e+02 Score=26.77 Aligned_cols=95 Identities=18% Similarity=0.079 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC--ChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHH
Q 003295 673 VTYSSLIHGLCNIGLIEDAKCLFDEMRKEGL-LP--NVACYTALIGGYCKLGQMDEAESVLQEMASINIHPN-KITYTIM 748 (833)
Q Consensus 673 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 748 (833)
..|.-=.+-|.+..++..|...|.+-++..+ .| +.+.|+.-..+-.-.|++..|+.-....... .|+ ...|.-=
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--KPTHLKAYIRG 159 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--Ccchhhhhhhh
Confidence 3455556667777778888888877776532 12 4456666666666677777777777666653 343 3344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 003295 749 IGGYCKLGDMKEAAKLLNVMA 769 (833)
Q Consensus 749 i~~~~~~g~~~~A~~~~~~m~ 769 (833)
..++....++++|....++..
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhh
Confidence 455556666666666555543
No 481
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=22.77 E-value=4.6e+02 Score=23.44 Aligned_cols=58 Identities=16% Similarity=0.006 Sum_probs=27.8
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003295 522 EMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSL 580 (833)
Q Consensus 522 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 580 (833)
.+.+.|.++.. --..++..+...++.-.|.++++.+.+.++..+..|-..-++.+...
T Consensus 11 ~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~ 68 (145)
T COG0735 11 RLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHC
Confidence 33444544222 22334455555555566666666666655554444443334444333
No 482
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=22.72 E-value=6.6e+02 Score=23.78 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=14.9
Q ss_pred HhcCChhHHHHHHHHHHHC
Q 003295 403 CKSGQMDNAENALEEMLSR 421 (833)
Q Consensus 403 ~~~g~~~~A~~~l~~~~~~ 421 (833)
.+.|+++.|.+.++-|.+.
T Consensus 132 l~~~~~~~Ae~~~~~ME~l 150 (204)
T COG2178 132 LRKGSFEEAERFLKFMEKL 150 (204)
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 4568899998888888764
No 483
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=22.46 E-value=1.5e+03 Score=27.74 Aligned_cols=247 Identities=13% Similarity=0.078 Sum_probs=144.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 003295 495 VNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLL 574 (833)
Q Consensus 495 ~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 574 (833)
++..+-...+..+.+.+. +++...+.++.+. +|...-...+.++.+.+........+..++.. +|..+-...+
T Consensus 633 ~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~ 705 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAAL 705 (897)
T ss_pred CCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHH
Confidence 466666666777777665 3455555555532 24444444555554443322222344444443 4666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChH
Q 003295 575 HGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTT 654 (833)
Q Consensus 575 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 654 (833)
.++...+..+ .. .+-...+ .+|...-...+.++.+.+..+. +..... .++..+-...+.++...+..+
T Consensus 706 ~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 706 DVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhcccc
Confidence 6666543221 12 2222332 3566666666777776655432 222222 357777777888888877654
Q ss_pred H-HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 003295 655 A-AFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEM 733 (833)
Q Consensus 655 ~-A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 733 (833)
. +...+..+.+. +|...-...+.++.+.|..+.+...+..+.+ .++...-...+.++.+.+. +++...+..+
T Consensus 774 ~~~~~~L~~ll~D---~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~ 846 (897)
T PRK13800 774 APAGDAVRALTGD---PDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEA 846 (897)
T ss_pred chhHHHHHHHhcC---CCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHH
Confidence 3 44555555543 4677778888889988886665555666665 3565566667777777765 5677777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 734 ASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 734 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
.+ .|+...-...+.++.+.+.-..+...+..+.+
T Consensus 847 L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 847 LT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred hc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 64 56777767777777775434567777777766
No 484
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.23 E-value=1.4e+03 Score=27.31 Aligned_cols=50 Identities=12% Similarity=0.244 Sum_probs=32.7
Q ss_pred HHHHhcCChhHHHHHHHHhhcCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003295 226 NSLVKANEVQKGIEVFETMCRGVSPDV--FLFSTAINAFCKRGRIEDAIGLFTKMEE 280 (833)
Q Consensus 226 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (833)
..|...|+++.|.+.-+ .+|+. ..+..-...|.+.+++..|.+++.++.+
T Consensus 366 k~yLd~g~y~kAL~~ar-----~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~ 417 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIAR-----TRPDALETVLLKQADFLFQDKEYLRAAEIYAETLS 417 (911)
T ss_pred HHHHhcchHHHHHHhcc-----CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 34556677777776543 33443 2344455667788889999998888853
No 485
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=21.43 E-value=8.9e+02 Score=24.82 Aligned_cols=43 Identities=7% Similarity=0.104 Sum_probs=22.9
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003295 693 CLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMAS 735 (833)
Q Consensus 693 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 735 (833)
++++.+.+.++.|.-+.+..+--.+.+.=.+.+.+.+|+.+.+
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4455555555555555555444444455555555555555553
No 486
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=21.38 E-value=2.1e+02 Score=18.37 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=8.8
Q ss_pred HHHHHHHhcCCHHHHHHH
Q 003295 747 IMIGGYCKLGDMKEAAKL 764 (833)
Q Consensus 747 ~li~~~~~~g~~~~A~~~ 764 (833)
.+...+...|++++|+++
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 344445555555555555
No 487
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=21.07 E-value=6.8e+02 Score=27.13 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=14.4
Q ss_pred HHHHHHhcCChhHHHHHHHHhh
Q 003295 224 LLNSLVKANEVQKGIEVFETMC 245 (833)
Q Consensus 224 ll~~~~~~g~~~~A~~~~~~~~ 245 (833)
+..-++..|.++.|.+++++-+
T Consensus 124 laadhvAAGsFetAm~LLnrQi 145 (422)
T PF06957_consen 124 LAADHVAAGSFETAMQLLNRQI 145 (422)
T ss_dssp SHHHHHHCT-HHHHHHHHHHHC
T ss_pred cHHHHHHhCCHHHHHHHHHHHh
Confidence 4555667777777777777665
No 488
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=20.92 E-value=1.3e+03 Score=27.08 Aligned_cols=84 Identities=14% Similarity=0.085 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHH-CCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-C------------CCHHHHHHHHHHHH
Q 003295 688 IEDAKCLFDEMRK-EGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINI-H------------PNKITYTIMIGGYC 753 (833)
Q Consensus 688 ~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~------------p~~~~~~~li~~~~ 753 (833)
.++....+....+ .|+..+......++... .|++..|..+++++...|- . .+......++.++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH
Confidence 4555566655544 47777777776666543 6899999999988775431 0 01112223333333
Q ss_pred hcCCHHHHHHHHHHHHHcCCC
Q 003295 754 KLGDMKEAAKLLNVMAEKGIS 774 (833)
Q Consensus 754 ~~g~~~~A~~~~~~m~~~g~~ 774 (833)
.++...++.+++++.+.|..
T Consensus 258 -~~d~~~al~~l~~L~~~G~d 277 (709)
T PRK08691 258 -NQDGAALLAKAQEMAACAVG 277 (709)
T ss_pred -cCCHHHHHHHHHHHHHhCCC
Confidence 35666666666666666544
No 489
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=20.70 E-value=1.1e+03 Score=27.49 Aligned_cols=86 Identities=17% Similarity=0.091 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CC----------CChhHHHHHHHHHH
Q 003295 653 TTAAFRLSNDMK-SRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEG---LL----------PNVACYTALIGGYC 718 (833)
Q Consensus 653 ~~~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~----------p~~~~~~~li~~~~ 718 (833)
.++....+.... ..|+..+......++... .|++..|+.+++++...| +. .+......++.++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH
Confidence 344455555444 457777777777776554 699999999999987643 11 12222334455444
Q ss_pred hcCChhHHHHHHHHHHhCCCCCC
Q 003295 719 KLGQMDEAESVLQEMASINIHPN 741 (833)
Q Consensus 719 ~~g~~~~A~~~~~~m~~~g~~p~ 741 (833)
.++...++.+++++...|+.+.
T Consensus 258 -~~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 258 -NQDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred -cCCHHHHHHHHHHHHHhCCCHH
Confidence 4889999999999998876443
No 490
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=20.68 E-value=1.4e+03 Score=26.94 Aligned_cols=96 Identities=13% Similarity=0.040 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHH---hcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 003295 217 SLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFC---KRGRIEDAIGLFTKMEELGIAPNVVTYNNI 293 (833)
Q Consensus 217 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 293 (833)
+...++.||..+.+.|++++....-..|..-.+.+...|..-+.... ..+...++..+|++.... .-++..|--+
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d--y~~v~iw~e~ 189 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGD--YNSVPIWEEV 189 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc--cccchHHHHH
Confidence 56667778888888998887766666666445666666666655443 346666677777776643 2344555555
Q ss_pred HHHHHhc-------CChhHHHHHHHHHH
Q 003295 294 IHGLCRN-------GRLYEAFHLKEKMV 314 (833)
Q Consensus 294 i~~~~~~-------g~~~~A~~~~~~m~ 314 (833)
++-+... ++++.-+.+|++..
T Consensus 190 ~~y~~~~~~~~~~~~d~k~~R~vf~ral 217 (881)
T KOG0128|consen 190 VNYLVGFGNVAKKSEDYKKERSVFERAL 217 (881)
T ss_pred HHHHHhccccccccccchhhhHHHHHHH
Confidence 5544432 33444555555554
No 491
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=20.64 E-value=1e+03 Score=25.32 Aligned_cols=53 Identities=13% Similarity=0.066 Sum_probs=37.9
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCChhHH----HHHHHHHH--hcCChhHHHHHHHH
Q 003295 365 DGYCKKGNISEALKIRDDMVSKGMSPNSVTF----NSLIHGFC--KSGQMDNAENALEE 417 (833)
Q Consensus 365 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~li~~~~--~~g~~~~A~~~l~~ 417 (833)
..+.+.+++..|.++|+++.++.++|+...+ -.+..+|. ..-++++|.+.++.
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3556889999999999999998766655443 33444443 36678888888875
No 492
>PHA02989 ankyrin repeat protein; Provisional
Probab=20.62 E-value=1.2e+03 Score=25.95 Aligned_cols=15 Identities=13% Similarity=0.047 Sum_probs=7.4
Q ss_pred HHHHHHHcCCCCChh
Q 003295 274 LFTKMEELGIAPNVV 288 (833)
Q Consensus 274 ~~~~m~~~g~~p~~~ 288 (833)
+.+.+.+.|..+|..
T Consensus 18 ~v~~LL~~GadvN~~ 32 (494)
T PHA02989 18 ALEFLLRTGFDVNEE 32 (494)
T ss_pred HHHHHHHcCCCcccc
Confidence 333444556555543
No 493
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=20.24 E-value=1.6e+03 Score=27.45 Aligned_cols=51 Identities=14% Similarity=0.253 Sum_probs=24.6
Q ss_pred cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhC
Q 003295 615 ADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIG--NTTAAFRLSNDMKSR 666 (833)
Q Consensus 615 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~ 666 (833)
.+++....+.+.+..+.. .-...-...++.+|.+.+ ++++|+.+..++.+.
T Consensus 791 ~~KVn~ICdair~~l~~~-~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 791 ESKVNKICDAIRKALEKP-KDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred ccHHHHHHHHHHHHhccc-ccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 334444444444443321 112333445556666665 566666666666544
No 494
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=20.16 E-value=1.4e+03 Score=26.64 Aligned_cols=17 Identities=18% Similarity=0.126 Sum_probs=9.7
Q ss_pred cCCHHHHHHHHHHHhhC
Q 003295 510 AGNLKEAGKLLMEMLQR 526 (833)
Q Consensus 510 ~g~~~~A~~~l~~m~~~ 526 (833)
.+++.+|...-+.|.+.
T Consensus 379 And~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 379 ANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred ccCHHHHHHHHHHHhcc
Confidence 45556666665555554
No 495
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=20.05 E-value=9.2e+02 Score=25.23 Aligned_cols=63 Identities=13% Similarity=0.136 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003295 723 MDEAESVLQEMASINIHPNK----ITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGH 787 (833)
Q Consensus 723 ~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 787 (833)
.++...+++.++.. .|+. ..|..+++.....|.+++.+.+|++++..|..|-...-..+++.+
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 34555566655543 3443 245555566666666666666666666666665544444444444
Done!