Query 003295
Match_columns 833
No_of_seqs 856 out of 3811
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 20:18:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003295.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003295hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 6.6E-41 2.3E-45 386.0 41.1 525 228-823 63-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.2E-40 7.5E-45 381.7 40.1 521 195-788 65-595 (597)
3 4g26_A Pentatricopeptide repea 100.0 2.4E-30 8.4E-35 284.6 23.4 185 255-439 29-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 3E-30 1E-34 284.0 23.9 204 202-405 9-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 2.2E-26 7.6E-31 249.1 47.8 286 497-791 101-387 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 2.4E-26 8.4E-31 248.8 47.8 376 228-649 9-385 (388)
7 2gw1_A Mitochondrial precursor 99.9 4.3E-23 1.5E-27 232.3 40.9 453 287-777 6-482 (514)
8 2gw1_A Mitochondrial precursor 99.9 5.8E-23 2E-27 231.3 41.3 453 252-742 6-482 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 1E-21 3.5E-26 217.1 39.4 304 217-526 25-358 (450)
10 3fp2_A TPR repeat-containing p 99.9 1.1E-21 3.7E-26 222.3 38.3 433 288-771 26-491 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 7.1E-21 2.4E-25 210.3 41.6 351 463-826 27-439 (450)
12 3fp2_A TPR repeat-containing p 99.9 5E-21 1.7E-25 216.8 39.1 441 218-701 25-491 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 5.2E-18 1.8E-22 180.7 41.5 326 463-820 4-348 (359)
14 1xi4_A Clathrin heavy chain; a 99.9 9.9E-16 3.4E-20 177.4 61.7 370 196-622 998-1375(1630)
15 1xi4_A Clathrin heavy chain; a 99.9 5.8E-15 2E-19 171.1 67.6 587 99-799 966-1585(1630)
16 3ieg_A DNAJ homolog subfamily 99.8 3.7E-18 1.3E-22 181.8 38.0 331 218-578 3-351 (359)
17 2xm6_A Protein corresponding t 99.8 3.1E-16 1.1E-20 174.8 51.6 395 341-805 26-466 (490)
18 2xm6_A Protein corresponding t 99.8 4.3E-16 1.5E-20 173.6 51.1 354 426-809 38-435 (490)
19 2ooe_A Cleavage stimulation fa 99.8 1.8E-16 6.3E-21 178.5 43.8 434 206-701 2-492 (530)
20 2ooe_A Cleavage stimulation fa 99.8 2.3E-16 7.7E-21 177.8 44.5 416 181-666 14-492 (530)
21 3hym_B Cell division cycle pro 99.8 2E-17 6.9E-22 174.0 33.5 289 497-793 22-321 (330)
22 3hym_B Cell division cycle pro 99.8 1.2E-17 4.1E-22 175.7 31.7 285 461-752 21-314 (330)
23 3spa_A Mtrpol, DNA-directed RN 99.8 1.2E-19 4.1E-24 203.6 11.3 120 251-370 126-249 (1134)
24 1b89_A Protein (clathrin heavy 99.8 1.3E-17 4.5E-22 174.1 23.3 282 195-519 15-304 (449)
25 1fch_A Peroxisomal targeting s 99.8 2.2E-17 7.4E-22 176.8 25.5 305 475-804 38-357 (368)
26 1b89_A Protein (clathrin heavy 99.8 3.4E-17 1.2E-21 171.0 24.9 239 230-509 15-253 (449)
27 1fch_A Peroxisomal targeting s 99.8 2.8E-17 9.7E-22 175.9 24.9 295 510-830 38-348 (368)
28 3spa_A Mtrpol, DNA-directed RN 99.8 3.1E-19 1.1E-23 200.2 9.1 151 286-441 126-286 (1134)
29 4eqf_A PEX5-related protein; a 99.8 1.6E-17 5.4E-22 177.8 19.7 267 532-802 65-352 (365)
30 4g1t_A Interferon-induced prot 99.7 2.8E-15 9.5E-20 166.4 36.4 391 392-815 51-469 (472)
31 4eqf_A PEX5-related protein; a 99.7 2.4E-16 8.1E-21 168.6 25.9 265 497-767 65-352 (365)
32 4g1t_A Interferon-induced prot 99.7 3.6E-15 1.2E-19 165.5 34.5 383 357-772 51-460 (472)
33 3cv0_A Peroxisome targeting si 99.7 5.5E-16 1.9E-20 162.7 26.0 278 497-804 21-313 (327)
34 3cv0_A Peroxisome targeting si 99.7 1.1E-15 3.9E-20 160.2 26.6 281 461-770 20-314 (327)
35 3mkr_A Coatomer subunit epsilo 99.7 2.4E-15 8.1E-20 154.3 26.1 249 508-770 10-263 (291)
36 3mkr_A Coatomer subunit epsilo 99.7 3.6E-15 1.2E-19 152.9 26.3 256 540-811 7-267 (291)
37 3e4b_A ALGK; tetratricopeptide 99.6 4.5E-14 1.6E-18 154.7 27.6 383 363-805 9-420 (452)
38 3uq3_A Heat shock protein STI1 99.6 8.2E-14 2.8E-18 140.3 26.3 223 569-805 7-235 (258)
39 3e4b_A ALGK; tetratricopeptide 99.6 1.3E-13 4.3E-18 151.2 28.7 109 476-596 231-351 (452)
40 3uq3_A Heat shock protein STI1 99.6 1.7E-13 5.9E-18 137.9 25.4 223 534-770 7-235 (258)
41 2pl2_A Hypothetical conserved 99.6 1.2E-13 4E-18 135.1 22.8 199 600-804 3-212 (217)
42 2pl2_A Hypothetical conserved 99.6 6.2E-14 2.1E-18 137.1 20.4 198 216-418 3-211 (217)
43 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.2E-13 4E-18 140.8 21.1 247 195-450 17-269 (275)
44 1ouv_A Conserved hypothetical 99.6 6.2E-12 2.1E-16 127.9 32.6 224 566-807 5-252 (273)
45 2ho1_A Type 4 fimbrial biogene 99.5 1.2E-12 4E-17 131.5 25.6 199 603-805 38-237 (252)
46 2h6f_A Protein farnesyltransfe 99.5 1.2E-12 3.9E-17 138.9 26.5 247 568-823 98-364 (382)
47 4e6h_A MRNA 3'-END-processing 99.5 1.5E-10 5E-15 131.0 44.9 458 200-701 49-570 (679)
48 3u4t_A TPR repeat-containing p 99.5 8.6E-13 2.9E-17 134.1 24.2 228 574-805 10-249 (272)
49 4e6h_A MRNA 3'-END-processing 99.5 8.4E-11 2.9E-15 132.9 42.4 436 180-682 66-584 (679)
50 1ouv_A Conserved hypothetical 99.5 7.3E-12 2.5E-16 127.4 30.8 223 217-456 5-251 (273)
51 2vq2_A PILW, putative fimbrial 99.5 2.5E-12 8.4E-17 126.3 26.0 207 602-814 8-217 (225)
52 2h6f_A Protein farnesyltransfe 99.5 1.6E-12 5.5E-17 137.7 25.4 147 499-649 99-246 (382)
53 1xnf_A Lipoprotein NLPI; TPR, 99.5 5.1E-13 1.8E-17 136.0 20.9 246 545-800 18-269 (275)
54 3u4t_A TPR repeat-containing p 99.5 2.2E-12 7.4E-17 131.2 25.3 244 538-787 9-265 (272)
55 2ho1_A Type 4 fimbrial biogene 99.5 3.9E-12 1.3E-16 127.6 26.7 198 570-771 40-238 (252)
56 2q7f_A YRRB protein; TPR, prot 99.5 1.3E-12 4.6E-17 130.1 22.0 198 603-805 24-221 (243)
57 2q7f_A YRRB protein; TPR, prot 99.5 7E-13 2.4E-17 132.1 19.8 201 217-421 22-222 (243)
58 2vq2_A PILW, putative fimbrial 99.5 8E-12 2.7E-16 122.6 26.2 201 567-771 8-211 (225)
59 4a1s_A PINS, partner of inscut 99.5 1.2E-12 3.9E-17 142.3 19.0 278 498-806 49-372 (411)
60 4a1s_A PINS, partner of inscut 99.4 3.8E-12 1.3E-16 138.2 20.2 278 463-771 49-372 (411)
61 3sf4_A G-protein-signaling mod 99.4 2.7E-12 9.1E-17 139.0 18.9 99 217-315 8-115 (406)
62 3sf4_A G-protein-signaling mod 99.4 6E-12 2.1E-16 136.2 21.4 278 496-805 8-335 (406)
63 2ond_A Cleavage stimulation fa 99.4 7.3E-11 2.5E-15 122.3 27.4 218 200-422 33-271 (308)
64 3ro2_A PINS homolog, G-protein 99.4 5.3E-12 1.8E-16 132.4 18.8 274 500-805 8-331 (338)
65 3vtx_A MAMA; tetratricopeptide 99.4 4.2E-11 1.4E-15 113.5 23.0 171 636-812 4-174 (184)
66 3vtx_A MAMA; tetratricopeptide 99.4 4.5E-11 1.5E-15 113.2 22.1 171 601-777 4-174 (184)
67 3ro2_A PINS homolog, G-protein 99.4 1.1E-11 3.6E-16 130.1 19.0 277 464-771 7-332 (338)
68 2ond_A Cleavage stimulation fa 99.4 3.3E-10 1.1E-14 117.3 29.1 219 549-771 33-270 (308)
69 3ulq_A Response regulator aspa 99.4 3.1E-11 1.1E-15 129.5 21.8 230 573-805 109-367 (383)
70 4abn_A Tetratricopeptide repea 99.4 5.2E-11 1.8E-15 131.2 23.8 213 583-802 84-317 (474)
71 4abn_A Tetratricopeptide repea 99.3 1.7E-11 5.8E-16 135.1 19.0 215 199-418 84-318 (474)
72 3ulq_A Response regulator aspa 99.3 6.7E-11 2.3E-15 126.9 23.0 230 538-770 109-367 (383)
73 3nf1_A KLC 1, kinesin light ch 99.3 3.3E-11 1.1E-15 124.9 16.0 245 497-770 27-306 (311)
74 3nf1_A KLC 1, kinesin light ch 99.3 7.1E-11 2.4E-15 122.3 17.6 155 195-349 39-222 (311)
75 3q15_A PSP28, response regulat 99.3 9.4E-10 3.2E-14 117.7 26.1 230 573-805 107-364 (378)
76 3q15_A PSP28, response regulat 99.2 7.6E-10 2.6E-14 118.4 24.1 230 537-770 106-364 (378)
77 1hz4_A MALT regulatory protein 99.2 2.3E-09 7.7E-14 114.4 27.4 300 499-806 16-349 (373)
78 3as5_A MAMA; tetratricopeptide 99.2 8.2E-10 2.8E-14 104.2 21.0 164 638-805 9-172 (186)
79 1hz4_A MALT regulatory protein 99.2 3.3E-09 1.1E-13 113.1 28.1 298 466-771 18-349 (373)
80 3as5_A MAMA; tetratricopeptide 99.2 7.5E-10 2.6E-14 104.5 20.2 163 220-385 10-172 (186)
81 4i17_A Hypothetical protein; T 99.2 1E-09 3.5E-14 108.0 20.8 207 600-820 5-221 (228)
82 4gyw_A UDP-N-acetylglucosamine 99.2 6.2E-10 2.1E-14 127.5 20.9 164 637-805 9-173 (723)
83 4gyw_A UDP-N-acetylglucosamine 99.2 5.5E-10 1.9E-14 128.0 20.2 164 252-419 9-172 (723)
84 4i17_A Hypothetical protein; T 99.1 3.8E-09 1.3E-13 103.8 21.1 206 565-784 5-221 (228)
85 3edt_B KLC 2, kinesin light ch 99.1 7.3E-10 2.5E-14 112.8 14.2 226 578-805 12-280 (283)
86 1qqe_A Vesicular transport pro 99.1 3.3E-09 1.1E-13 108.7 19.1 196 612-811 47-272 (292)
87 3edt_B KLC 2, kinesin light ch 99.1 1.1E-09 3.9E-14 111.3 15.1 220 200-420 25-280 (283)
88 3mv2_B Coatomer subunit epsilo 99.0 5.5E-08 1.9E-12 97.4 23.9 178 586-770 85-281 (310)
89 2uy1_A Cleavage stimulation fa 99.0 3.5E-07 1.2E-11 100.5 31.6 125 638-770 287-412 (493)
90 1qqe_A Vesicular transport pro 99.0 2E-08 6.8E-13 102.9 20.3 89 332-420 47-146 (292)
91 3mv2_B Coatomer subunit epsilo 99.0 1.2E-07 4E-12 95.0 24.6 182 621-811 85-285 (310)
92 2uy1_A Cleavage stimulation fa 99.0 1.2E-06 4.1E-11 96.2 34.9 123 604-734 288-411 (493)
93 2fo7_A Synthetic consensus TPR 99.0 2.6E-08 8.8E-13 88.0 17.8 128 675-805 4-131 (136)
94 3urz_A Uncharacterized protein 98.9 1.7E-08 5.7E-13 97.5 16.6 186 605-816 7-194 (208)
95 2fo7_A Synthetic consensus TPR 98.9 2.7E-08 9.1E-13 87.9 16.3 127 221-349 4-130 (136)
96 3urz_A Uncharacterized protein 98.9 4E-08 1.4E-12 94.8 17.9 192 567-785 4-198 (208)
97 3qky_A Outer membrane assembly 98.9 3.5E-08 1.2E-12 99.2 18.2 100 217-316 14-126 (261)
98 3rjv_A Putative SEL1 repeat pr 98.9 9.8E-08 3.4E-12 92.3 20.7 178 620-809 4-200 (212)
99 3dra_A Protein farnesyltransfe 98.9 9.4E-07 3.2E-11 89.5 28.0 230 548-783 49-299 (306)
100 3qky_A Outer membrane assembly 98.9 3.6E-08 1.2E-12 99.1 17.3 184 566-771 14-224 (261)
101 2pzi_A Probable serine/threoni 98.9 3.4E-08 1.2E-12 113.8 18.4 173 613-792 402-583 (681)
102 2pzi_A Probable serine/threoni 98.9 1.6E-08 5.4E-13 116.6 15.5 173 229-407 402-583 (681)
103 3dra_A Protein farnesyltransfe 98.9 1.6E-06 5.4E-11 87.9 27.7 219 477-700 48-286 (306)
104 2r5s_A Uncharacterized protein 98.8 3.3E-08 1.1E-12 92.5 13.8 59 223-281 11-69 (176)
105 3rjv_A Putative SEL1 repeat pr 98.8 2.2E-07 7.5E-12 89.8 19.9 175 586-772 5-198 (212)
106 4ga2_A E3 SUMO-protein ligase 98.8 1.7E-08 5.8E-13 91.5 10.4 110 230-341 9-118 (150)
107 2yhc_A BAMD, UPF0169 lipoprote 98.8 2.5E-07 8.5E-12 90.5 19.4 184 602-807 4-214 (225)
108 2r5s_A Uncharacterized protein 98.8 5.1E-08 1.7E-12 91.2 13.7 163 253-420 7-172 (176)
109 2yhc_A BAMD, UPF0169 lipoprote 98.8 3.2E-07 1.1E-11 89.6 19.9 184 220-423 6-215 (225)
110 3qou_A Protein YBBN; thioredox 98.8 9.9E-08 3.4E-12 97.2 15.7 165 217-384 116-282 (287)
111 3qou_A Protein YBBN; thioredox 98.8 1.6E-07 5.4E-12 95.7 16.8 164 636-805 116-283 (287)
112 4ga2_A E3 SUMO-protein ligase 98.8 4.7E-08 1.6E-12 88.6 11.4 141 647-792 7-149 (150)
113 2ifu_A Gamma-SNAP; membrane fu 98.7 1.6E-07 5.3E-12 96.9 15.3 156 638-798 77-253 (307)
114 2vsy_A XCC0866; transferase, g 98.7 2E-07 6.8E-12 105.5 17.3 152 197-351 3-157 (568)
115 2vsy_A XCC0866; transferase, g 98.7 3.4E-07 1.1E-11 103.6 18.6 152 581-736 3-157 (568)
116 2ifu_A Gamma-SNAP; membrane fu 98.7 9E-07 3.1E-11 91.1 19.4 160 224-384 42-222 (307)
117 3u3w_A Transcriptional activat 98.6 3.8E-06 1.3E-10 85.8 23.1 163 643-805 81-265 (293)
118 4gco_A Protein STI-1; structur 98.6 7.1E-07 2.4E-11 77.8 14.8 107 708-818 14-121 (126)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.3E-06 4.5E-11 84.3 17.8 129 637-771 6-150 (213)
120 2qfc_A PLCR protein; TPR, HTH, 98.6 4.5E-06 1.5E-10 85.2 22.6 185 639-823 77-287 (293)
121 3q7a_A Farnesyltransferase alp 98.6 2.2E-05 7.6E-10 80.2 26.9 174 475-653 67-258 (349)
122 4f3v_A ESX-1 secretion system 98.6 9.8E-07 3.4E-11 87.2 15.7 197 614-818 18-247 (282)
123 3q7a_A Farnesyltransferase alp 98.6 2.8E-05 9.4E-10 79.6 26.8 169 549-722 71-257 (349)
124 3gyz_A Chaperone protein IPGC; 98.6 1.2E-06 4E-11 79.0 14.8 102 706-812 35-137 (151)
125 3u3w_A Transcriptional activat 98.6 3.3E-06 1.1E-10 86.2 20.3 202 214-420 42-265 (293)
126 4gco_A Protein STI-1; structur 98.6 1.3E-06 4.4E-11 76.2 14.7 109 673-785 14-123 (126)
127 1hh8_A P67PHOX, NCF-2, neutrop 98.5 4.2E-06 1.4E-10 80.7 19.3 126 221-351 9-150 (213)
128 2vgx_A Chaperone SYCD; alterna 98.5 3.6E-07 1.2E-11 82.4 10.3 97 707-805 21-117 (148)
129 4f3v_A ESX-1 secretion system 98.5 3.5E-07 1.2E-11 90.3 10.7 187 195-386 18-237 (282)
130 1a17_A Serine/threonine protei 98.5 2.9E-06 1E-10 77.8 16.5 130 673-805 14-145 (166)
131 2c2l_A CHIP, carboxy terminus 98.5 4.2E-07 1.4E-11 92.2 11.2 193 217-420 3-198 (281)
132 1a17_A Serine/threonine protei 98.5 3E-06 1E-10 77.7 15.2 127 220-348 15-143 (166)
133 2qfc_A PLCR protein; TPR, HTH, 98.5 8.1E-06 2.8E-10 83.3 19.9 127 223-349 80-223 (293)
134 3gyz_A Chaperone protein IPGC; 98.5 2.3E-06 7.9E-11 77.0 13.7 103 672-778 36-138 (151)
135 3gw4_A Uncharacterized protein 98.5 1.1E-06 3.7E-11 84.0 12.4 84 231-314 5-93 (203)
136 1na0_A Designed protein CTPR3; 98.5 3E-06 1E-10 73.2 14.2 98 218-316 9-106 (125)
137 3dss_A Geranylgeranyl transfer 98.4 6.3E-05 2.2E-09 76.6 25.5 192 619-818 91-315 (331)
138 2e2e_A Formate-dependent nitri 98.4 1.1E-06 3.8E-11 82.0 11.7 120 648-770 21-143 (177)
139 1na0_A Designed protein CTPR3; 98.4 6.1E-06 2.1E-10 71.2 15.7 112 673-787 10-121 (125)
140 2lni_A Stress-induced-phosphop 98.4 4.2E-06 1.4E-10 73.4 14.0 99 217-316 15-113 (133)
141 3gw4_A Uncharacterized protein 98.4 1.6E-06 5.6E-11 82.8 12.1 154 195-349 4-174 (203)
142 2vgx_A Chaperone SYCD; alterna 98.4 1.1E-06 3.8E-11 79.1 10.2 109 206-316 10-118 (148)
143 2vyi_A SGTA protein; chaperone 98.4 5.5E-06 1.9E-10 72.2 14.5 117 673-792 13-129 (131)
144 2c2l_A CHIP, carboxy terminus 98.4 1.1E-06 3.7E-11 89.1 11.1 192 602-805 4-198 (281)
145 4gcn_A Protein STI-1; structur 98.4 2.5E-06 8.4E-11 74.5 12.0 104 709-815 10-119 (127)
146 2vyi_A SGTA protein; chaperone 98.4 4.5E-06 1.5E-10 72.8 13.8 117 219-337 13-129 (131)
147 2e2e_A Formate-dependent nitri 98.4 2.2E-06 7.7E-11 79.9 12.3 121 195-317 22-145 (177)
148 2lni_A Stress-induced-phosphop 98.4 4.5E-06 1.5E-10 73.2 13.3 96 673-770 17-112 (133)
149 1p5q_A FKBP52, FK506-binding p 98.3 5.9E-06 2E-10 86.1 15.6 95 708-804 197-292 (336)
150 3dss_A Geranylgeranyl transfer 98.3 0.00011 3.8E-09 74.7 23.9 221 195-421 41-304 (331)
151 3upv_A Heat shock protein STI1 98.3 8.3E-06 2.9E-10 70.9 13.8 95 709-805 6-100 (126)
152 1p5q_A FKBP52, FK506-binding p 98.3 1.4E-05 4.6E-10 83.3 16.1 133 636-770 146-293 (336)
153 3upv_A Heat shock protein STI1 98.3 1.5E-05 5.2E-10 69.2 13.8 96 673-770 5-100 (126)
154 4gcn_A Protein STI-1; structur 98.3 1E-05 3.4E-10 70.5 12.5 107 674-783 10-122 (127)
155 2xcb_A PCRH, regulatory protei 98.2 6E-06 2E-10 73.7 11.1 93 676-770 22-114 (142)
156 2xcb_A PCRH, regulatory protei 98.2 4.8E-06 1.6E-10 74.3 10.4 98 218-316 18-115 (142)
157 1elw_A TPR1-domain of HOP; HOP 98.2 2.9E-05 1E-09 66.0 14.4 98 218-316 4-101 (118)
158 2kck_A TPR repeat; tetratricop 98.2 1.5E-05 5.3E-10 67.1 12.5 99 706-806 5-106 (112)
159 1elw_A TPR1-domain of HOP; HOP 98.2 4.1E-05 1.4E-09 65.0 15.4 92 677-770 9-100 (118)
160 2fbn_A 70 kDa peptidylprolyl i 98.2 2.4E-05 8.1E-10 74.4 14.0 129 675-806 41-186 (198)
161 1elr_A TPR2A-domain of HOP; HO 98.2 1.3E-05 4.6E-10 69.7 11.3 95 675-770 7-107 (131)
162 3q49_B STIP1 homology and U bo 98.2 3.4E-05 1.1E-09 68.0 14.0 98 671-770 8-105 (137)
163 3sz7_A HSC70 cochaperone (SGT) 98.2 1.6E-05 5.6E-10 72.8 12.3 99 671-771 10-108 (164)
164 1elr_A TPR2A-domain of HOP; HO 98.1 2.1E-05 7E-10 68.5 12.4 111 707-820 4-120 (131)
165 2fbn_A 70 kDa peptidylprolyl i 98.1 2.2E-05 7.4E-10 74.7 12.8 121 219-341 39-175 (198)
166 1hxi_A PEX5, peroxisome target 98.1 1.6E-05 5.6E-10 68.5 10.8 93 710-805 20-113 (121)
167 3q49_B STIP1 homology and U bo 98.1 2.4E-05 8.1E-10 69.0 12.2 98 706-805 8-105 (137)
168 2dba_A Smooth muscle cell asso 98.1 9.1E-05 3.1E-09 66.0 16.0 96 672-770 28-127 (148)
169 4b4t_Q 26S proteasome regulato 98.1 0.00012 4E-09 79.3 19.8 121 684-804 107-243 (434)
170 2kck_A TPR repeat; tetratricop 98.1 2.7E-05 9.1E-10 65.6 11.4 57 257-314 11-67 (112)
171 2dba_A Smooth muscle cell asso 98.1 0.0001 3.5E-09 65.7 15.9 112 705-821 26-142 (148)
172 3sz7_A HSC70 cochaperone (SGT) 98.1 3.7E-05 1.3E-09 70.4 13.0 98 218-316 11-108 (164)
173 1hxi_A PEX5, peroxisome target 98.0 2.5E-05 8.4E-10 67.3 10.3 93 222-315 21-113 (121)
174 3ro3_A PINS homolog, G-protein 98.0 4.1E-05 1.4E-09 69.5 11.2 132 674-805 11-157 (164)
175 2xev_A YBGF; tetratricopeptide 97.9 0.00011 3.7E-09 63.9 13.0 91 678-770 8-104 (129)
176 4b4t_Q 26S proteasome regulato 97.9 0.00023 7.9E-09 77.0 18.5 161 539-699 11-202 (434)
177 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 5.1E-05 1.7E-09 82.7 12.7 138 636-797 267-405 (457)
178 3rkv_A Putative peptidylprolyl 97.9 7.1E-05 2.4E-09 68.3 11.9 98 672-770 11-125 (162)
179 1dce_A Protein (RAB geranylger 97.9 0.00034 1.1E-08 78.0 19.0 174 616-795 43-244 (567)
180 1wao_1 Serine/threonine protei 97.9 7.8E-05 2.7E-09 81.6 13.6 115 195-311 18-134 (477)
181 3ro3_A PINS homolog, G-protein 97.9 5.6E-05 1.9E-09 68.5 10.7 132 639-770 11-157 (164)
182 1klx_A Cysteine rich protein B 97.9 0.00033 1.1E-08 61.8 14.7 110 687-807 10-127 (138)
183 2xev_A YBGF; tetratricopeptide 97.9 0.00041 1.4E-08 60.0 15.3 92 712-805 7-104 (129)
184 3rkv_A Putative peptidylprolyl 97.8 0.00014 4.7E-09 66.4 12.1 99 637-736 11-126 (162)
185 2hr2_A Hypothetical protein; a 97.8 0.00017 6E-09 64.0 12.0 103 712-816 16-146 (159)
186 3k9i_A BH0479 protein; putativ 97.8 3.6E-05 1.2E-09 65.8 7.5 84 721-805 4-89 (117)
187 1ihg_A Cyclophilin 40; ppiase 97.8 0.00016 5.4E-09 76.1 13.7 90 706-798 272-362 (370)
188 1wao_1 Serine/threonine protei 97.8 4.1E-05 1.4E-09 83.8 9.3 118 227-346 15-134 (477)
189 3k9i_A BH0479 protein; putativ 97.8 3.6E-05 1.2E-09 65.8 6.9 86 685-771 3-90 (117)
190 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00019 6.3E-09 78.2 14.1 97 218-315 268-379 (457)
191 2if4_A ATFKBP42; FKBP-like, al 97.8 4.7E-05 1.6E-09 79.2 8.9 148 636-805 178-327 (338)
192 2hr2_A Hypothetical protein; a 97.7 0.00027 9.1E-09 62.8 11.7 94 675-770 14-130 (159)
193 1ihg_A Cyclophilin 40; ppiase 97.7 0.00016 5.4E-09 76.1 12.1 138 219-377 224-361 (370)
194 1dce_A Protein (RAB geranylger 97.7 0.0009 3.1E-08 74.5 17.7 170 236-409 47-243 (567)
195 1klx_A Cysteine rich protein B 97.6 0.0012 4.2E-08 58.0 14.5 111 651-772 9-127 (138)
196 2l6j_A TPR repeat-containing p 97.6 3.8E-05 1.3E-09 64.7 4.2 92 706-800 3-101 (111)
197 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00017 5.7E-09 75.0 9.0 150 601-771 178-328 (338)
198 3n71_A Histone lysine methyltr 97.5 0.00034 1.1E-08 76.0 11.3 98 708-805 352-463 (490)
199 1zu2_A Mitochondrial import re 97.5 0.00013 4.5E-09 64.6 6.4 91 683-777 13-124 (158)
200 2kat_A Uncharacterized protein 97.5 0.00071 2.4E-08 57.3 10.6 79 690-770 3-81 (115)
201 1zu2_A Mitochondrial import re 97.5 0.00028 9.7E-09 62.5 8.1 84 649-735 14-119 (158)
202 3n71_A Histone lysine methyltr 97.4 0.00043 1.5E-08 75.2 10.6 98 673-770 352-463 (490)
203 2l6j_A TPR repeat-containing p 97.4 0.00012 4.2E-09 61.4 5.1 92 217-310 3-101 (111)
204 2kat_A Uncharacterized protein 97.3 0.0008 2.7E-08 56.9 9.2 80 201-281 3-82 (115)
205 1na3_A Designed protein CTPR2; 97.3 0.0016 5.3E-08 52.0 10.4 80 708-789 10-89 (91)
206 1na3_A Designed protein CTPR2; 97.3 0.0015 5E-08 52.2 9.9 79 219-298 10-88 (91)
207 3ly7_A Transcriptional activat 97.1 0.0078 2.7E-07 61.3 14.5 85 739-827 274-358 (372)
208 3ma5_A Tetratricopeptide repea 97.1 0.0016 5.6E-08 53.4 7.8 63 707-770 7-69 (100)
209 3ma5_A Tetratricopeptide repea 96.9 0.0044 1.5E-07 50.7 9.1 65 250-315 5-69 (100)
210 3ly7_A Transcriptional activat 96.8 0.019 6.4E-07 58.6 14.3 64 286-351 276-339 (372)
211 1pc2_A Mitochondria fission pr 96.6 0.011 3.7E-07 51.8 9.5 80 689-770 15-99 (152)
212 3lvg_A Clathrin heavy chain 1; 96.5 4E-06 1.4E-10 86.3 -14.9 279 232-587 39-324 (624)
213 3qww_A SET and MYND domain-con 96.4 0.0072 2.5E-07 64.3 8.8 62 744-805 342-410 (433)
214 3mkq_A Coatomer beta'-subunit; 96.4 0.14 4.8E-06 60.0 20.8 103 291-420 633-735 (814)
215 3mkq_A Coatomer beta'-subunit; 96.3 0.18 6.2E-06 59.1 21.0 164 571-794 633-800 (814)
216 3qww_A SET and MYND domain-con 96.2 0.0099 3.4E-07 63.3 8.8 85 686-770 312-410 (433)
217 2kc7_A BFR218_protein; tetratr 96.2 0.0093 3.2E-07 48.4 6.8 56 714-770 7-63 (99)
218 3lvg_A Clathrin heavy chain 1; 96.2 2E-05 6.8E-10 81.3 -11.5 266 217-518 53-325 (624)
219 3u64_A Protein TP_0956; tetrat 96.2 0.13 4.3E-06 50.3 15.1 87 723-813 179-278 (301)
220 2kc7_A BFR218_protein; tetratr 96.1 0.0095 3.3E-07 48.3 6.4 56 226-281 8-64 (99)
221 3qwp_A SET and MYND domain-con 96.1 0.014 4.8E-07 62.2 9.3 62 744-805 331-399 (429)
222 3bee_A Putative YFRE protein; 96.1 0.024 8.2E-07 45.4 8.2 64 706-770 5-71 (93)
223 3qwp_A SET and MYND domain-con 96.0 0.034 1.2E-06 59.2 11.8 92 679-770 294-399 (429)
224 1pc2_A Mitochondria fission pr 95.8 0.064 2.2E-06 46.9 10.4 85 723-811 14-103 (152)
225 3bee_A Putative YFRE protein; 95.6 0.13 4.5E-06 41.0 10.9 66 250-316 4-72 (93)
226 2v5f_A Prolyl 4-hydroxylase su 95.3 0.083 2.8E-06 43.3 9.0 64 707-770 5-74 (104)
227 1wy6_A Hypothetical protein ST 95.2 1.2 4.1E-05 37.4 16.2 141 262-424 17-157 (172)
228 1nzn_A CGI-135 protein, fissio 95.2 0.1 3.4E-06 43.8 8.9 79 725-805 19-102 (126)
229 3u64_A Protein TP_0956; tetrat 95.0 0.63 2.1E-05 45.4 15.3 84 339-424 180-272 (301)
230 2v5f_A Prolyl 4-hydroxylase su 94.5 0.16 5.3E-06 41.6 8.5 64 672-735 5-74 (104)
231 3mkq_B Coatomer subunit alpha; 94.3 0.77 2.6E-05 41.1 13.0 128 646-803 14-141 (177)
232 1wy6_A Hypothetical protein ST 94.2 2 6.7E-05 36.1 13.9 139 649-809 19-157 (172)
233 4ady_A RPN2, 26S proteasome re 94.2 11 0.00036 43.6 45.1 261 540-805 382-657 (963)
234 4h7y_A Dual specificity protei 94.1 0.56 1.9E-05 40.3 10.9 101 217-318 12-125 (161)
235 1nzn_A CGI-135 protein, fissio 94.1 0.31 1E-05 40.9 9.2 88 685-776 14-106 (126)
236 3mkq_B Coatomer subunit alpha; 94.0 2.6 9E-05 37.7 15.9 101 612-733 15-115 (177)
237 4h7y_A Dual specificity protei 92.8 0.99 3.4E-05 38.8 10.4 32 249-280 10-47 (161)
238 2wpv_A GET4, UPF0363 protein Y 92.4 9.4 0.00032 37.9 18.9 26 496-521 133-158 (312)
239 1y8m_A FIS1; mitochondria, unk 90.9 6.8 0.00023 33.4 13.5 71 739-811 36-109 (144)
240 3o48_A Mitochondria fission 1 90.3 3.2 0.00011 34.9 10.8 71 739-811 37-110 (134)
241 4b4t_P 26S proteasome regulato 89.9 22 0.00075 37.6 20.6 51 545-595 29-84 (445)
242 4fhn_B Nucleoporin NUP120; pro 89.4 6.6 0.00023 47.5 17.4 126 325-452 902-1045(1139)
243 2wpv_A GET4, UPF0363 protein Y 89.3 18 0.00062 35.8 21.3 112 465-591 36-158 (312)
244 4gns_B Protein CSD3, chitin bi 88.8 3 0.0001 47.1 12.6 49 683-733 348-397 (754)
245 4b4t_P 26S proteasome regulato 88.5 20 0.00068 37.9 18.4 197 196-420 29-246 (445)
246 3lpz_A GET4 (YOR164C homolog); 87.9 23 0.0008 35.3 22.7 166 466-665 39-215 (336)
247 4gns_B Protein CSD3, chitin bi 87.9 3.4 0.00012 46.7 12.3 52 750-803 345-397 (754)
248 4ady_A RPN2, 26S proteasome re 87.3 48 0.0016 38.3 49.4 311 505-826 382-720 (963)
249 1y8m_A FIS1; mitochondria, unk 86.0 13 0.00044 31.7 11.8 71 704-776 36-109 (144)
250 3lpz_A GET4 (YOR164C homolog); 85.5 31 0.0011 34.4 22.7 81 495-594 134-214 (336)
251 2ff4_A Probable regulatory pro 84.8 2.5 8.7E-05 44.0 8.9 67 257-324 176-247 (388)
252 3o48_A Mitochondria fission 1 84.5 7.1 0.00024 32.8 9.5 71 704-776 37-110 (134)
253 2ff4_A Probable regulatory pro 84.5 6.4 0.00022 40.9 11.8 68 711-779 175-247 (388)
254 1v54_E Cytochrome C oxidase po 83.1 6.1 0.00021 31.2 7.8 60 201-260 28-87 (109)
255 1v54_E Cytochrome C oxidase po 82.5 5.3 0.00018 31.5 7.3 47 725-771 28-74 (109)
256 4fhn_B Nucleoporin NUP120; pro 82.2 23 0.0008 42.8 17.0 143 538-688 818-987 (1139)
257 3ffl_A Anaphase-promoting comp 81.4 4.3 0.00015 35.7 7.3 116 677-805 25-150 (167)
258 3txn_A 26S proteasome regulato 80.5 56 0.0019 33.6 21.7 28 532-559 19-46 (394)
259 3ffl_A Anaphase-promoting comp 78.5 13 0.00045 32.6 9.4 56 224-279 26-90 (167)
260 4b4t_R RPN7, 26S proteasome re 77.9 36 0.0012 35.7 14.9 61 709-769 133-195 (429)
261 2y69_E Cytochrome C oxidase su 75.6 13 0.00045 31.1 8.0 60 201-260 71-130 (152)
262 2y69_E Cytochrome C oxidase su 74.4 11 0.00038 31.5 7.3 58 726-784 72-129 (152)
263 1k1a_A B-cell lymphoma 3-encod 72.9 32 0.0011 32.2 12.0 23 262-284 16-38 (241)
264 1zbp_A Hypothetical protein VP 71.8 15 0.00051 35.2 8.7 60 715-777 5-64 (273)
265 3esl_A Checkpoint serine/threo 71.4 27 0.00092 31.8 9.9 56 720-775 92-148 (202)
266 2p58_C Putative type III secre 70.4 18 0.00061 28.4 7.1 15 228-242 50-64 (116)
267 1k1a_A B-cell lymphoma 3-encod 69.6 43 0.0015 31.2 12.2 87 293-383 12-102 (241)
268 3eu9_A Huntingtin-interacting 69.5 13 0.00043 35.0 8.2 98 204-306 23-125 (240)
269 2uwj_G Type III export protein 67.0 17 0.00059 28.5 6.4 47 263-315 50-96 (115)
270 1zbp_A Hypothetical protein VP 66.9 13 0.00044 35.7 7.1 55 227-281 6-60 (273)
271 4b4t_R RPN7, 26S proteasome re 65.4 53 0.0018 34.4 12.6 97 639-735 133-236 (429)
272 1n11_A Ankyrin; clathrin, BAND 63.2 66 0.0023 33.5 13.1 192 204-412 28-229 (437)
273 1wdy_A 2-5A-dependent ribonucl 62.6 69 0.0024 30.6 12.4 16 226-241 10-25 (285)
274 1wdy_A 2-5A-dependent ribonucl 61.3 54 0.0018 31.4 11.3 37 205-241 20-59 (285)
275 3eu9_A Huntingtin-interacting 60.8 42 0.0014 31.2 10.1 9 366-374 115-123 (240)
276 3esl_A Checkpoint serine/threo 60.3 48 0.0016 30.2 9.3 57 685-741 92-149 (202)
277 4b4t_S RPN3, 26S proteasome re 59.6 68 0.0023 34.2 11.7 65 217-281 230-299 (523)
278 3ltm_A Alpha-REP4; protein eng 57.9 1.1E+02 0.0038 27.7 18.6 17 636-652 63-79 (211)
279 4a1g_A Mitotic checkpoint seri 57.5 64 0.0022 27.9 9.2 50 726-775 84-134 (152)
280 3jxi_A Vanilloid receptor-rela 56.8 30 0.001 33.0 8.3 55 260-314 10-73 (260)
281 3jxi_A Vanilloid receptor-rela 54.4 40 0.0014 32.1 8.7 56 294-349 9-73 (260)
282 3kea_A K1L; tropism, ANK repea 53.4 48 0.0016 32.2 9.2 174 207-394 48-225 (285)
283 3kea_A K1L; tropism, ANK repea 53.1 1.6E+02 0.0054 28.4 13.0 17 400-416 166-182 (285)
284 2qx5_A Nucleoporin NIC96; mRNA 52.1 99 0.0034 34.3 12.0 76 122-209 299-382 (661)
285 2wvi_A Mitotic checkpoint seri 51.9 85 0.0029 27.5 9.2 54 724-777 77-131 (164)
286 3ltm_A Alpha-REP4; protein eng 50.1 1.5E+02 0.005 26.9 20.1 154 216-385 31-184 (211)
287 3eiq_C Programmed cell death p 49.8 1.3E+02 0.0043 30.4 11.5 24 641-664 221-244 (358)
288 3eiq_C Programmed cell death p 49.1 1.2E+02 0.0042 30.5 11.2 64 500-564 220-285 (358)
289 2zu6_B Programmed cell death p 47.5 39 0.0013 33.4 7.2 64 500-564 169-234 (307)
290 3aji_A 26S proteasome non-ATPa 46.5 1.5E+02 0.005 27.2 11.2 15 228-242 13-27 (231)
291 4a1g_A Mitotic checkpoint seri 45.7 1.2E+02 0.0042 26.1 9.1 51 761-811 84-135 (152)
292 3b7b_A Euchromatic histone-lys 45.0 97 0.0033 28.6 9.7 15 474-488 219-233 (237)
293 1qsa_A Protein (soluble lytic 44.8 3.5E+02 0.012 29.7 35.6 415 289-766 9-437 (618)
294 3txn_A 26S proteasome regulato 43.8 2.8E+02 0.0096 28.3 25.9 218 572-808 104-345 (394)
295 2zu6_B Programmed cell death p 41.9 1.4E+02 0.0047 29.5 10.1 24 641-664 170-193 (307)
296 1qsa_A Protein (soluble lytic 40.1 4.1E+02 0.014 29.1 37.3 331 254-630 9-347 (618)
297 2d2s_A Exocyst complex compone 39.7 1.3E+02 0.0045 28.2 9.2 88 224-314 24-118 (235)
298 2wvi_A Mitotic checkpoint seri 38.1 69 0.0023 28.1 6.4 52 340-391 78-130 (164)
299 4aez_C MAD3, mitotic spindle c 36.4 90 0.0031 28.9 7.2 52 724-775 131-183 (223)
300 3aji_A 26S proteasome non-ATPa 35.8 2.2E+02 0.0074 25.9 10.5 17 261-277 12-28 (231)
301 3b7b_A Euchromatic histone-lys 35.8 92 0.0032 28.8 7.9 37 205-241 26-64 (237)
302 2r9g_A AAA ATPase, central reg 35.3 2.5E+02 0.0087 25.3 10.0 54 545-599 27-85 (204)
303 3t8k_A Uncharacterized protein 35.2 1.9E+02 0.0066 25.6 9.5 25 297-321 45-69 (186)
304 3hra_A Ankyrin repeat family p 33.8 1.3E+02 0.0046 26.7 8.4 13 298-310 80-92 (201)
305 2uwj_G Type III export protein 32.6 1.8E+02 0.0063 22.9 9.4 77 199-282 22-98 (115)
306 1n11_A Ankyrin; clathrin, BAND 32.2 4E+02 0.014 27.2 13.0 180 224-426 17-206 (437)
307 2p58_C Putative type III secre 32.2 1.9E+02 0.0064 22.9 10.2 83 233-324 22-105 (116)
308 2nsz_A Programmed cell death p 31.8 1.9E+02 0.0064 24.1 8.0 21 608-628 13-33 (129)
309 3kae_A CDC27, possible protein 31.6 1.5E+02 0.0053 26.0 7.3 28 778-805 115-142 (242)
310 3mv2_A Coatomer subunit alpha; 30.5 3.7E+02 0.013 26.4 10.8 31 359-389 209-239 (325)
311 2rfa_A Transient receptor pote 30.3 1.6E+02 0.0056 26.9 8.6 25 364-388 158-182 (232)
312 2rfa_A Transient receptor pote 30.1 2E+02 0.007 26.2 9.3 149 224-382 40-219 (232)
313 2d2s_A Exocyst complex compone 29.3 3E+02 0.01 25.7 9.8 90 643-735 24-119 (235)
314 4aez_C MAD3, mitotic spindle c 28.0 1.2E+02 0.0042 28.0 6.6 52 760-811 132-184 (223)
315 2nsz_A Programmed cell death p 27.7 2.6E+02 0.0089 23.1 9.2 63 501-564 11-75 (129)
316 2r9g_A AAA ATPase, central reg 27.2 3.5E+02 0.012 24.4 10.3 35 651-686 28-62 (204)
317 3ctd_A Putative ATPase, AAA fa 26.7 3.6E+02 0.012 24.6 9.2 92 538-630 38-137 (213)
318 4b4t_S RPN3, 26S proteasome re 26.6 3.8E+02 0.013 28.5 10.9 59 289-350 233-298 (523)
319 4g8k_A 2-5A-dependent ribonucl 25.5 4.8E+02 0.016 25.4 15.8 14 366-379 174-187 (337)
320 4g8k_A 2-5A-dependent ribonucl 25.5 3.2E+02 0.011 26.7 10.3 13 229-241 176-188 (337)
321 4gq2_M Nucleoporin NUP120; bet 25.4 4.3E+02 0.015 30.9 12.4 131 224-371 816-950 (950)
322 3hra_A Ankyrin repeat family p 25.2 3.5E+02 0.012 23.7 9.7 14 263-276 13-26 (201)
323 2ion_A PDCD4, programmed cell 25.0 2.6E+02 0.0087 24.1 7.9 63 501-564 13-77 (152)
324 3bge_A Predicted ATPase; struc 24.4 3.9E+02 0.013 24.1 8.9 21 651-671 21-41 (201)
325 2ion_A PDCD4, programmed cell 23.7 1.8E+02 0.0062 25.0 6.7 22 607-628 14-35 (152)
326 3t8k_A Uncharacterized protein 23.5 3.8E+02 0.013 23.6 10.2 25 367-391 45-69 (186)
327 3bge_A Predicted ATPase; struc 22.7 4.2E+02 0.015 23.8 9.6 35 545-579 20-54 (201)
328 2ijq_A Hypothetical protein; s 22.7 2.6E+02 0.0089 24.3 7.3 51 265-315 45-103 (161)
329 1bd8_A P19INK4D CDK4/6 inhibit 22.2 1.1E+02 0.0038 25.8 5.3 15 263-277 10-24 (156)
330 2etb_A Transient receptor pote 22.0 1.7E+02 0.0058 27.4 7.0 193 291-487 3-243 (256)
331 2b7e_A PRE-mRNA processing pro 21.8 44 0.0015 23.4 1.8 37 198-234 1-38 (59)
332 3twr_A Tankyrase-2; ankyrin re 21.0 2.8E+02 0.0095 23.5 7.8 123 256-391 9-135 (165)
333 2f8y_A Notch homolog 1, transl 21.0 2.5E+02 0.0084 25.3 7.8 38 205-242 40-79 (223)
334 1ug3_A EIF4GI, eukaryotic prot 20.9 4E+02 0.014 26.4 9.7 23 222-244 15-37 (339)
335 3pvs_A Replication-associated 20.5 7.3E+02 0.025 25.7 13.9 152 512-665 166-358 (447)
336 1bpo_A Protein (clathrin); cla 20.5 7.2E+02 0.025 25.9 11.1 72 211-282 354-425 (494)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.6e-41 Score=386.01 Aligned_cols=525 Identities=12% Similarity=-0.023 Sum_probs=344.2
Q ss_pred HHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHH
Q 003295 228 LVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAF 307 (833)
Q Consensus 228 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 307 (833)
..+.|.+..+...+..+ ..++...|+.++..|.+.|++++|..+|++|.+. .||..+++.++.+|.+.|++++|.
T Consensus 63 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTD---SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccCccCCCCCccccc---hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence 44566666666666554 2367888999999999999999999999999864 578888889999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003295 308 HLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKG 387 (833)
Q Consensus 308 ~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g 387 (833)
.+|+++... +++..+++.++.+|.+.|++++|..+|+++... .. ...++.+.++ ...|
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~----~~~~~~~~~~-----------~~~~ 195 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPF-----RK----DEKNANKLLM-----------QDGG 195 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTT-----C--------------C-----------CCSS
T ss_pred HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCc-----cc----cccccccccc-----------cccc
Confidence 999988643 678888999999999999999999988853221 10 0001111111 1123
Q ss_pred CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHH
Q 003295 388 MSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTL 467 (833)
Q Consensus 388 ~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 467 (833)
..++..+|+.++.+|.+.|++++|.++|++|.+.+.. +...+..++..+...+..+.+.
T Consensus 196 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~-------------------- 254 (597)
T 2xpi_A 196 IKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDL-------------------- 254 (597)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHH--------------------
T ss_pred cchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHH--------------------
Confidence 3445566666666666666666666666666654311 2222222222221111111000
Q ss_pred HHHHHHhcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 003295 468 LVSGLCKNGKQAEATEL-CFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDG 546 (833)
Q Consensus 468 li~~~~~~g~~~~A~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g 546 (833)
+..+ +..+...+......+|+.++..|.+.|++++|.++|+++.+. .++..+|+.++.+|.+.|
T Consensus 255 -------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 255 -------------VLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp -------------HHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTT
T ss_pred -------------HHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhc
Confidence 0000 122222223334455666666777777777777777777655 357777777777777777
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 003295 547 KPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFN 626 (833)
Q Consensus 547 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 626 (833)
++++|.++|+++.+.+.. +..+++.++.++.+.|++++|.++++++.+.. +.+..+++.++.+|.+.|++++|.++|+
T Consensus 320 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 320 RFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp CHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 777777777777766533 56667777777777777777777777776542 4456777777777777777777777777
Q ss_pred HHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003295 627 EMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPN 706 (833)
Q Consensus 627 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 706 (833)
++.+..+. +..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+.. +.+
T Consensus 398 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 474 (597)
T 2xpi_A 398 KSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYD 474 (597)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCC
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 77765433 66777777888888888888888887777664 3466777778888888888888888888877653 346
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003295 707 VACYTALIGGYCKLGQMDEAESVLQEMASI----NIHPN--KITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITY 780 (833)
Q Consensus 707 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 780 (833)
..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+..+|
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 553 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVH 553 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHH
Confidence 777888888888888888888888877764 55666 6778888888888888888888888887753 3367778
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHhhc
Q 003295 781 NVFMDGHCKGGNVEEAFKVCDRMLSEGLSLD-EITYTTLIDGWQ 823 (833)
Q Consensus 781 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~ 823 (833)
..++.+|.+.|++++|.++++++++ +.|+ ...|..+-..|.
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHh
Confidence 8888888888888888888888877 4555 556665555543
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-40 Score=381.66 Aligned_cols=521 Identities=11% Similarity=-0.007 Sum_probs=392.7
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 003295 195 KNLGFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGL 274 (833)
Q Consensus 195 ~~~~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 274 (833)
+.|.+..+...|..+ ..+++..|+.++..+.+.|++++|..+|++|.. ..|+..++..++.+|.+.|++++|..+
T Consensus 65 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 65 TDGSFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD-ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh-hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 345555566665543 335889999999999999999999999999983 346889999999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 003295 275 FTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFV 354 (833)
Q Consensus 275 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 354 (833)
|+++... .++..+++.++.+|++.|++++|.++|+++. |+.. ...++.+.++ ...|..
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~~~~~-----------~~~~~~ 197 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETN-----PFRK----DEKNANKLLM-----------QDGGIK 197 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSC-----TTC--------------C-----------CCSSCC
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccC-----Cccc----cccccccccc-----------cccccc
Confidence 9998653 5789999999999999999999999998532 2210 0111111111 123445
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHH--H-HHHHHHCCCCCCcccHH
Q 003295 355 PNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAEN--A-LEEMLSRGLSINQGAYT 431 (833)
Q Consensus 355 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~--~-l~~~~~~g~~~~~~~~~ 431 (833)
++..+|+.++.+|.+.|++++|.++|++|.+.++. +...+..+...+...+..+.+.. + +..+...+
T Consensus 198 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~--------- 267 (597)
T 2xpi_A 198 LEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED--------- 267 (597)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGG---------
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccch---------
Confidence 56788888888888888888888888888875432 44455555544433322221111 0 22222111
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003295 432 SVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAG 511 (833)
Q Consensus 432 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 511 (833)
..+...++..++..|.+.|++++|.++++++.+. +++..+|+.++.+|.+.|
T Consensus 268 --------------------------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 268 --------------------------AAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp --------------------------HHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTT
T ss_pred --------------------------HHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhc
Confidence 1112223444555666677777777777776654 468888888888888888
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003295 512 NLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWE 591 (833)
Q Consensus 512 ~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 591 (833)
++++|..+|+++.+.++. +..+++.++.++.+.|+.++|..+++++.+.. +.+..+++.++..|.+.|++++|.++|+
T Consensus 320 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 320 RFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp CHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 888888888888877655 77788888888888999999999998888664 3478888888889999999999999999
Q ss_pred HHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC
Q 003295 592 ECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPT 671 (833)
Q Consensus 592 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 671 (833)
++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.++. +..+|+.++.+|.+.|++++|.+.|+++.+.. +.+
T Consensus 398 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 474 (597)
T 2xpi_A 398 KSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYD 474 (597)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 887753 345778899999999999999999999999887654 78889999999999999999999999998764 447
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--hhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 003295 672 SVTYSSLIHGLCNIGLIEDAKCLFDEMRKE----GLLPN--VACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITY 745 (833)
Q Consensus 672 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 745 (833)
..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+..+|
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 553 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVH 553 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHH
Confidence 888999999999999999999999999875 66777 6899999999999999999999999998865 5688999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHh
Q 003295 746 TIMIGGYCKLGDMKEAAKLLNVMAEKGISP-DSITYNVFMDGHC 788 (833)
Q Consensus 746 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~ 788 (833)
..++.+|.+.|++++|.+.++++.+. .| +...+..+...|.
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAI--SPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHh
Confidence 99999999999999999999999985 45 5677777777654
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2.4e-30 Score=284.64 Aligned_cols=185 Identities=17% Similarity=0.323 Sum_probs=97.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC---------hhHHHHHHHHHHhCCCCCChhhH
Q 003295 255 FSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGR---------LYEAFHLKEKMVLREVEPSLITY 325 (833)
Q Consensus 255 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~~A~~~~~~m~~~~~~p~~~t~ 325 (833)
++.+|.+||+.|++++|+++|++|.+.|+.||.++||+||.+|++.+. +++|.++|++|...|+.||.+||
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444455555555555555555555555555555555555555444332 34455555555555555555555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Q 003295 326 SILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKS 405 (833)
Q Consensus 326 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 405 (833)
++||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 003295 406 GQMDNAENALEEMLSRGLSINQGAYTSVIKWLCI 439 (833)
Q Consensus 406 g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~ 439 (833)
|++++|.++|++|.+.|..|+..||+.++.+++.
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 5555555555555555555555555555555443
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3e-30 Score=283.98 Aligned_cols=204 Identities=16% Similarity=0.163 Sum_probs=182.2
Q ss_pred HHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHhh-cCCCCCHHHHHHHHHHHHhcCC---------hhH
Q 003295 202 AIDVFSIFSSKGIFPSL-KTCNFLLNSLVKANEVQKGIEVFETMC-RGVSPDVFLFSTAINAFCKRGR---------IED 270 (833)
Q Consensus 202 A~~~f~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~---------~~~ 270 (833)
+..+++.+.+.+..+++ ..++.+|++|+|.|++++|.++|++|. .|++||.+|||++|.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 33445566666665544 468899999999999999999999999 8999999999999999998765 688
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003295 271 AIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSV 350 (833)
Q Consensus 271 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 350 (833)
|.++|++|.+.|+.||.+|||+||++|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Q 003295 351 RGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKS 405 (833)
Q Consensus 351 ~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 405 (833)
.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999864
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.2e-26 Score=249.15 Aligned_cols=286 Identities=14% Similarity=0.046 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003295 497 TVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHG 576 (833)
Q Consensus 497 ~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 576 (833)
..+|..++.++.+.|++++|...|+++.+.++. +...+..+...+...|++++|.+.|+++++..+. +..++..+...
T Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 178 (388)
T 1w3b_A 101 IDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCV 178 (388)
T ss_dssp HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 334445555555555555555555555544332 3334444444555555555555555555544222 34455555555
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHH
Q 003295 577 LCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAA 656 (833)
Q Consensus 577 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 656 (833)
+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...+++..+..+. +..++..+...+.+.|++++|
T Consensus 179 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 256 (388)
T 1w3b_A 179 FNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLA 256 (388)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555555432 223444555555555566666666666555554332 455566666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003295 657 FRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASI 736 (833)
Q Consensus 657 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 736 (833)
.+.++++.+.. +.+..+|..+...+.+.|++++|...|+++.+.. +.+..+++.+...+.+.|++++|.+.++++.+.
T Consensus 257 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 257 IDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66666665543 2244556666666666666666666666666542 345556666666666666666666666666654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCC
Q 003295 737 NIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISP-DSITYNVFMDGHCKGG 791 (833)
Q Consensus 737 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g 791 (833)
. +.+..++..++.+|.+.|++++|.+.++++++ +.| +...|..++..+...|
T Consensus 335 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 335 F-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 2 34455666666666666666666666666665 234 3455666655555444
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.4e-26 Score=248.84 Aligned_cols=376 Identities=14% Similarity=0.067 Sum_probs=173.0
Q ss_pred HHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHH
Q 003295 228 LVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAF 307 (833)
Q Consensus 228 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 307 (833)
+.+.|++++|...|+++.+..|.+...+..+...+.+.|++++|...++...+.. ..+..+|..++..|.+.|++++|.
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 3344444444444444443233334444444444444444444444444444432 123344444444444444444444
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003295 308 HLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPN-YVVYNTLIDGYCKKGNISEALKIRDDMVSK 386 (833)
Q Consensus 308 ~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 386 (833)
+.|+++.+.. +.+..+|..+...+.+.|++++|...|+++.+. .|+ ...+..+...+...|++++|.+.|+++.+.
T Consensus 88 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 88 EHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4444444321 112233444444444444455554444444443 222 223334444444445555555555554443
Q ss_pred CCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHH
Q 003295 387 GMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLT 466 (833)
Q Consensus 387 g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 466 (833)
.+. +..+|..+...+.+.|++++|.+.|+++.+.+. .+...|..+..
T Consensus 165 ~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~------------------------------- 211 (388)
T 1w3b_A 165 QPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGN------------------------------- 211 (388)
T ss_dssp CTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH-------------------------------
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHH-------------------------------
Confidence 211 334444555555555555555555555444321 11112222222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 003295 467 LLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDG 546 (833)
Q Consensus 467 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g 546 (833)
.+...|++++|...+++..+.. +.+..++..++..+.+.|++++|...|+++.+.++. +..+|..+...+.+.|
T Consensus 212 ----~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g 285 (388)
T 1w3b_A 212 ----VLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKG 285 (388)
T ss_dssp ----HHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHS
T ss_pred ----HHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcC
Confidence 2222222222222222222221 113445555555555555555555555555554433 4455555555555555
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 003295 547 KPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFN 626 (833)
Q Consensus 547 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 626 (833)
++++|.+.++++++.. +.+..++..+...+.+.|++++|...++++.+.. +.+..++..+...|.+.|++++|...|+
T Consensus 286 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 286 SVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555555542 2245555555555555555555555555555432 2234455555555555555555555555
Q ss_pred HHHHCCCccCHHHHHHHHHHHHH
Q 003295 627 EMISKKMELNPVVYNTLIRAYCK 649 (833)
Q Consensus 627 ~~~~~~~~~~~~~~~~li~~~~~ 649 (833)
++.+..+. +...|..+...+..
T Consensus 364 ~a~~~~p~-~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 364 EAIRISPT-FADAYSNMGNTLKE 385 (388)
T ss_dssp HHHTTCTT-CHHHHHHHHHHHHH
T ss_pred HHHhhCCC-CHHHHHhHHHHHHH
Confidence 55554332 34444444444433
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.3e-23 Score=232.35 Aligned_cols=453 Identities=9% Similarity=-0.034 Sum_probs=279.7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 003295 287 VVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDG 366 (833)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~ 366 (833)
...+......+.+.|++++|+..|+++.... |+..+|..+...+.+.|++++|...++++.+.+. .+..+|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHH
Confidence 3456667777777888888888888877753 6777777777778888888888888887776532 245677777777
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHH
Q 003295 367 YCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSA 446 (833)
Q Consensus 367 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 446 (833)
|.+.|++++|...|+++...+. ++......++..+.+......+.+.+..+...+..|+...+..-........
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----- 156 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQE----- 156 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhcc-----
Confidence 7778888888888877777643 2444444445444444444444444433333322222221111110000000
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Q 003295 447 LHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCE---AGNLKEAGKLLMEM 523 (833)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~---~g~~~~A~~~l~~m 523 (833)
..|........+ ......... .....+.+...+......+.. .|++++|...|+++
T Consensus 157 -----------~~~~~~~~~~~~----~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 157 -----------NLPSVTSMASFF----GIFKPELTF------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp -----------CCCCHHHHHHHH----TTSCCCCCC------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred -----------CCchhHHHHHHH----hhcCHHHHH------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 111111110000 000000000 000001124444444444444 67778888777777
Q ss_pred hh-----C--CC------CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003295 524 LQ-----R--GL------ILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELW 590 (833)
Q Consensus 524 ~~-----~--g~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 590 (833)
.+ . .+ +.+...+..+...+...|++++|...++++++.... ...+..+...+...|++++|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 66 3 11 113456667777777788888888888877776433 667777777777788888888888
Q ss_pred HHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 003295 591 EECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILP 670 (833)
Q Consensus 591 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 670 (833)
+++.+.. +.+...+..+...|...|++++|...++++.+..+. +...+..+...+...|++++|...++++.+.. +.
T Consensus 294 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 370 (514)
T 2gw1_A 294 DKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PE 370 (514)
T ss_dssp HHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TT
T ss_pred HHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-cc
Confidence 7777653 335566777777788888888888888887776544 56677777778888888888888888877653 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----hhHHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCCH
Q 003295 671 TSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEG-LLPN----VACYTALIGGYCK---LGQMDEAESVLQEMASINIHPNK 742 (833)
Q Consensus 671 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~ 742 (833)
+..++..+...+...|++++|...++++.+.. -.++ ...+..+...+.. .|++++|...++++.+.. +.+.
T Consensus 371 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 449 (514)
T 2gw1_A 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSE 449 (514)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccH
Confidence 56677777888888888888888888877641 0111 3377777888888 888888888888887653 4466
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003295 743 ITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDS 777 (833)
Q Consensus 743 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 777 (833)
.++..++..|.+.|++++|.+.++++.+. .|+.
T Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~ 482 (514)
T 2gw1_A 450 QAKIGLAQMKLQQEDIDEAITLFEESADL--ARTM 482 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--cccc
Confidence 77788888888888888888888888874 4543
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=5.8e-23 Score=231.32 Aligned_cols=453 Identities=14% Similarity=0.050 Sum_probs=329.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 003295 252 VFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILING 331 (833)
Q Consensus 252 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 331 (833)
...+......+.+.|++++|...|+++.+.. ||..+|..++.+|.+.|++++|...++++.+.+ +.+..+|..+...
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4667888999999999999999999999875 799999999999999999999999999999864 4567889999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHH
Q 003295 332 LIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNA 411 (833)
Q Consensus 332 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 411 (833)
+.+.|++++|...|+++.+.+. ++......++..+.+......+.+.+..+...+..|+...+................
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999998763 355555666666666655666666666555554445444333322222222222222
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHH
Q 003295 412 ENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCK---NGKQAEATELCFRL 488 (833)
Q Consensus 412 ~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~ 488 (833)
..+...+......+.... .....+...+......+.. .|++++|...++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFAN--------------------------YDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp HHHHHHHTTSCCCCCCSS--------------------------CCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHH--------------------------hcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 222211111111100000 0001112223333333333 67777777777777
Q ss_pred HH-----C--CC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 003295 489 FE-----K--GF------TVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLK 555 (833)
Q Consensus 489 ~~-----~--g~------~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 555 (833)
.+ . .. +.+..++..++..+...|++++|...++++.+.++. ...+..+...+...|++++|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 76 2 11 224567888889999999999999999999887654 888888999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc
Q 003295 556 EDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMEL 635 (833)
Q Consensus 556 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 635 (833)
+++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+..+.
T Consensus 294 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 370 (514)
T 2gw1_A 294 DKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE- 370 (514)
T ss_dssp HHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-
T ss_pred HHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-
Confidence 999887543 67788889999999999999999999998764 335678888899999999999999999999887544
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCh
Q 003295 636 NPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGIL-PT----SVTYSSLIHGLCN---IGLIEDAKCLFDEMRKEGLLPNV 707 (833)
Q Consensus 636 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~ 707 (833)
+...+..+...+.+.|++++|...++++.+.... ++ ...+..+...+.. .|++++|...++++.+.. +.+.
T Consensus 371 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 449 (514)
T 2gw1_A 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSE 449 (514)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccH
Confidence 6778899999999999999999999998765211 11 3378889999999 999999999999998863 4467
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 003295 708 ACYTALIGGYCKLGQMDEAESVLQEMASINIHPNK 742 (833)
Q Consensus 708 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 742 (833)
.++..+...|.+.|++++|...|+++.+. .|+.
T Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~ 482 (514)
T 2gw1_A 450 QAKIGLAQMKLQQEDIDEAITLFEESADL--ARTM 482 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--cccc
Confidence 78889999999999999999999999985 4543
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1e-21 Score=217.06 Aligned_cols=304 Identities=14% Similarity=0.093 Sum_probs=212.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 003295 217 SLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHG 296 (833)
Q Consensus 217 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 296 (833)
+..+|..+...+.+.|++++|+..|+++....+.+..+|..++.++.+.|++++|...|+++.+.+.. +..++..++..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHH
Confidence 67788889999999999999999999998656778899999999999999999999999999887533 57788999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCh---hhHHHHH------------HHHHhcCChhHHHHHHHHHHHCCCCCChhhHH
Q 003295 297 LCRNGRLYEAFHLKEKMVLREVEPSL---ITYSILI------------NGLIKLEKFDDANFVLKEMSVRGFVPNYVVYN 361 (833)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~~~~p~~---~t~~~li------------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~ 361 (833)
|.+.|++++|.+.|+++.+.. +.+. ..+..++ ..+.+.|++++|...|+++.+... .+..++.
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 181 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRE 181 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHH
Confidence 999999999999999998753 2233 5555554 347888888888888888877532 2577788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHH--------
Q 003295 362 TLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSV-------- 433 (833)
Q Consensus 362 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~l-------- 433 (833)
.++.+|.+.|++++|.+.|+++.+... .+..+|..++..|.+.|++++|.+.|+++.+... .+...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHH
Confidence 888888888888888888888876532 3677888888888888888888888888876532 223333333
Q ss_pred ----HHHHHhcCChhHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003295 434 ----IKWLCINSRFNSALHFTKEMLLRNLRPG---DGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHG 506 (833)
Q Consensus 434 ----i~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 506 (833)
+..+...|++++|+..+..++....... ...+..+...+.+.|++++|...++++.+.. +.+..+|..++.+
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4555555555555555555554332210 1234444555555555555555555554432 2244555555555
Q ss_pred HHhcCCHHHHHHHHHHHhhC
Q 003295 507 MCEAGNLKEAGKLLMEMLQR 526 (833)
Q Consensus 507 ~~~~g~~~~A~~~l~~m~~~ 526 (833)
|...|++++|...++++.+.
T Consensus 339 ~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 55555555555555555544
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=1.1e-21 Score=222.31 Aligned_cols=433 Identities=12% Similarity=0.025 Sum_probs=281.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 003295 288 VTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGY 367 (833)
Q Consensus 288 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~ 367 (833)
..|..+...+.+.|++++|+..|+++.... +.+..+|..+...|.+.|++++|...++++.+.+. .+..++..+...|
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHH
Confidence 456666777777777777777777777653 34566677777777777777777777777766532 2456666677777
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCcccHHHHHHHHHhcCChhH
Q 003295 368 CKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGL--SINQGAYTSVIKWLCINSRFNS 445 (833)
Q Consensus 368 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~ 445 (833)
.+.|++++|.+.|+. ... .|+. ....+..+...+...+|...++++..... .+........+..
T Consensus 104 ~~~g~~~~A~~~~~~-~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~--------- 169 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSV-LSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS--------- 169 (537)
T ss_dssp HHHTCHHHHHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH---------
T ss_pred HHcCCHHHHHHHHHH-Hhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH---------
Confidence 777777777777753 322 1221 11223344444555566666666544210 0111111222222
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH--------hcCCHHHH
Q 003295 446 ALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVN-TVTSNALIHGMC--------EAGNLKEA 516 (833)
Q Consensus 446 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~--------~~g~~~~A 516 (833)
+....+.+.+...+...... .+. ......+...+. ..|++++|
T Consensus 170 --------------------------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A 221 (537)
T 3fp2_A 170 --------------------------FFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKS 221 (537)
T ss_dssp --------------------------HHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHH
T ss_pred --------------------------HHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 23333333333222111111 111 112222222211 22467888
Q ss_pred HHHHHHHhhCCCCCCH-------HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003295 517 GKLLMEMLQRGLILDK-------VTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIEL 589 (833)
Q Consensus 517 ~~~l~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 589 (833)
..+++++.+..+. +. .++..+...+...|++++|...++++.+. .|+...+..+...+...|++++|...
T Consensus 222 ~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 298 (537)
T 3fp2_A 222 TDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKF 298 (537)
T ss_dssp HHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHH
T ss_pred HHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHH
Confidence 8888888776544 32 24566667777888888888888888876 34577788888888888888888888
Q ss_pred HHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 003295 590 WEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGIL 669 (833)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 669 (833)
++++.+.. +.+..++..+...+...|++++|...++++.+..+. +...|..+...+...|++++|.+.++++.+.. +
T Consensus 299 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~ 375 (537)
T 3fp2_A 299 FQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-P 375 (537)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 88887754 345777888888888888999999888888877544 56788888888889999999999998888764 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCChhHHHHHHHHHHhc----------CChhHHHHHHHHHH
Q 003295 670 PTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEG-----LLPNVACYTALIGGYCKL----------GQMDEAESVLQEMA 734 (833)
Q Consensus 670 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~ 734 (833)
.+...+..+...+...|++++|...++++.+.. .......+..+...+.+. |++++|...++++.
T Consensus 376 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 455 (537)
T 3fp2_A 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC 455 (537)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHH
Confidence 466778888888899999999999998887642 011222344555667777 99999999999988
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003295 735 SINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEK 771 (833)
Q Consensus 735 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 771 (833)
+.. +.+..+|..++.+|.+.|++++|.+.++++.+.
T Consensus 456 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 456 ELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 753 556788889999999999999999999999884
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=7.1e-21 Score=210.29 Aligned_cols=351 Identities=15% Similarity=0.065 Sum_probs=243.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003295 463 GLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGC 542 (833)
Q Consensus 463 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~ 542 (833)
..+..++..+.+.|++++|...|+++.+.. +.+..++..++.++...|++++|...|+++.+.++. +...+..+...+
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 104 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHH
Confidence 344555555666666666666666655542 235666666666666666666666666666665544 556666666666
Q ss_pred HhcCChhhHHHHHHHHHHCCCCCCH---HHHHHH------------HHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 003295 543 CKDGKPEEGFKLKEDMIKRGIQPDN---YTYNLL------------LHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGV 607 (833)
Q Consensus 543 ~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 607 (833)
.+.|++++|...|+++.+.... +. ..+..+ ...+...|++++|...|+++.+.. +.+..++..
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 182 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELREL 182 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 6666666666666666654322 22 333333 344777888888888888887653 346777888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH---------
Q 003295 608 MIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSL--------- 678 (833)
Q Consensus 608 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l--------- 678 (833)
+..+|.+.|++++|...|+++.+..+. +..+|..++..|...|++++|+..++++.... +.+...+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKL 260 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHH
Confidence 888888888888888888888776443 67888888888888888888888888887653 2244444444
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----hhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003295 679 ---IHGLCNIGLIEDAKCLFDEMRKEGLLPN-----VACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIG 750 (833)
Q Consensus 679 ---i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 750 (833)
...+.+.|++++|...|+++.+. .|+ ...|..++..+.+.|++++|...++++.+.. +.+..+|..++.
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 337 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 77888899999999999999884 354 3477888889999999999999999988753 557888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH------------HHhcCC-----CHHHHHHHHHH-HHHCCCCCC
Q 003295 751 GYCKLGDMKEAAKLLNVMAEKGISP-DSITYNVFMD------------GHCKGG-----NVEEAFKVCDR-MLSEGLSLD 811 (833)
Q Consensus 751 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~------------~~~~~g-----~~~~A~~~~~~-m~~~g~~p~ 811 (833)
+|...|++++|...++++++ +.| +..++..+.. .|...| +.+++.+.+++ .++ ..||
T Consensus 338 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~--~~pd 413 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ--WHPD 413 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH--SCGG
T ss_pred HHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH--hCCC
Confidence 99999999999999999988 445 4566666663 344444 56777888876 343 2333
Q ss_pred -----------HHHHHHHHHhhccCC
Q 003295 812 -----------EITYTTLIDGWQSST 826 (833)
Q Consensus 812 -----------~~~~~~l~~~~~~~~ 826 (833)
...+..+..+|...+
T Consensus 414 ~~~~~~~~~~a~~~~~~i~~ay~~L~ 439 (450)
T 2y4t_A 414 NFQNEEEKKKAEKKFIDIAAAKEVLS 439 (450)
T ss_dssp GCCSHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhC
Confidence 235666666665433
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=5e-21 Score=216.83 Aligned_cols=441 Identities=11% Similarity=-0.001 Sum_probs=233.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 003295 218 LKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGL 297 (833)
Q Consensus 218 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 297 (833)
...|..+...+.+.|++++|...|++++...|.+..+|..+..+|.+.|++++|.+.|+++.+.++. +..++..++..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHH
Confidence 3456667777788888888888888887545667788888888888888888888888888776532 567777788888
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCChhhHHHHHHHHHHcCChHH
Q 003295 298 CRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGF--VPNYVVYNTLIDGYCKKGNISE 375 (833)
Q Consensus 298 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~y~~li~~~~~~g~~~~ 375 (833)
.+.|++++|...|+. ... .|+.. ...+..+...+...+|...++++..... .+........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~~-~~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSV-LSL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHHH-Hhc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 888888888888853 322 22221 2223445555566777778877754310 1111222334444556666666
Q ss_pred HHHHHHHHHhCCCCCChh-HHHHHHHHHHh--------cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHH
Q 003295 376 ALKIRDDMVSKGMSPNSV-TFNSLIHGFCK--------SGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSA 446 (833)
Q Consensus 376 A~~~~~~m~~~g~~p~~~-~~~~li~~~~~--------~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 446 (833)
+...+...... .+... ....+...+.. .|++++|..+++++.+.... +...+..+.
T Consensus 179 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~------------ 243 (537)
T 3fp2_A 179 EVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAA------------ 243 (537)
T ss_dssp HHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHH------------
T ss_pred HHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHH------------
Confidence 55544433321 22211 22222222211 23566666666666554211 111111111
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 003295 447 LHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQR 526 (833)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~ 526 (833)
.++..+...+...|++++|...++++.+.. |+...+..+...+...|++++|...++++.+.
T Consensus 244 ----------------~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 305 (537)
T 3fp2_A 244 ----------------LALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDL 305 (537)
T ss_dssp ----------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc
Confidence 122333334444455555555555544432 22444555555555555555555555555544
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHH
Q 003295 527 GLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYG 606 (833)
Q Consensus 527 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 606 (833)
.+. +..+|..+...+...|++++|...++++++.... +...+..+...+...|++++|...++++.+.. +.+...+.
T Consensus 306 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 382 (537)
T 3fp2_A 306 NPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPT 382 (537)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHH
T ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 333 4455555555555555555555555555554322 33445555555555555555555555555442 22344555
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCC-----ccCHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhCCCCCC
Q 003295 607 VMIDGFCKADKIEEGETLFNEMISKKM-----ELNPVVYNTLIRAYCKI----------GNTTAAFRLSNDMKSRGILPT 671 (833)
Q Consensus 607 ~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p~ 671 (833)
.+...+...|++++|...++++.+..+ ......+......+.+. |++++|...+++..+.. +.+
T Consensus 383 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~ 461 (537)
T 3fp2_A 383 FFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRS 461 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCC
Confidence 555555555555555555555543211 11222233444455555 66666666666666543 334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003295 672 SVTYSSLIHGLCNIGLIEDAKCLFDEMRKE 701 (833)
Q Consensus 672 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 701 (833)
...+..+...+.+.|++++|.+.|+++.+.
T Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 462 EQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 555666666666666666666666666653
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=5.2e-18 Score=180.72 Aligned_cols=326 Identities=10% Similarity=-0.005 Sum_probs=197.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003295 463 GLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGC 542 (833)
Q Consensus 463 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~ 542 (833)
..+..+...+...|++++|...++++.+..+ .+..++..+...+...|++++|...++++.+..+. +...+..+...+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHH
Confidence 3445555666666666666666666665432 24556666666666666666666666666655433 455566666666
Q ss_pred HhcCChhhHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHH
Q 003295 543 CKDGKPEEGFKLKEDMIKRGIQ--PDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEE 620 (833)
Q Consensus 543 ~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 620 (833)
...|++++|...++++.+.... .+...+..+..... ...+..+...+...|++++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHHH
Confidence 6666666666666666654220 12222222211000 0011122455666777777
Q ss_pred HHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 621 GETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRK 700 (833)
Q Consensus 621 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 700 (833)
|.+.++++.+..+. +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+
T Consensus 139 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 139 AITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777776665443 56666677777777777777777777776653 34566666777777777777777777777766
Q ss_pred CCCCCChhHHH------------HHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 003295 701 EGLLPNVACYT------------ALIGGYCKLGQMDEAESVLQEMASINIHPNK----ITYTIMIGGYCKLGDMKEAAKL 764 (833)
Q Consensus 701 ~g~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~ 764 (833)
.. +.+...+. .+...+.+.|++++|...++++.+.. +.+. ..+..+..++...|++++|++.
T Consensus 217 ~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 217 LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 42 22222222 22555777788888888888777642 2233 2344567777788888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 003295 765 LNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSLD-EITYTTLID 820 (833)
Q Consensus 765 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~ 820 (833)
++++.+.. +.+..++..++..+...|++++|.+.++++++ +.|+ ...+..+..
T Consensus 295 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~ 348 (359)
T 3ieg_A 295 CSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEK 348 (359)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHH
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHH
Confidence 88877742 33667777788888888888888888888776 4555 444444443
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=9.9e-16 Score=177.39 Aligned_cols=370 Identities=15% Similarity=0.118 Sum_probs=185.3
Q ss_pred ccCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 003295 196 NLGFGYAIDVFSIFSSKGI--FPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIG 273 (833)
Q Consensus 196 ~~~~~~A~~~f~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 273 (833)
.|.+.+|++.+++..-.+- .-+...+|.|+....+. +..+..+..++.- .+...-+...+...|.+++|..
T Consensus 998 aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd------~~d~~eIA~Iai~lglyEEAf~ 1070 (1630)
T 1xi4_A 998 ADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD------NYDAPDIANIAISNELFEEAFA 1070 (1630)
T ss_pred CCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh------hccHHHHHHHHHhCCCHHHHHH
Confidence 4555555555555542211 12234444454444444 2333333333321 1112224555555666666666
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 003295 274 LFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGF 353 (833)
Q Consensus 274 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 353 (833)
+|++... .....+.++. ..|++++|.++.++. -+..+|..+..++.+.|++++|...|.+.
T Consensus 1071 IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA----- 1131 (1630)
T 1xi4_A 1071 IFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----- 1131 (1630)
T ss_pred HHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----
Confidence 6666421 1122222222 445566666665543 13455566666666666666666666443
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHH
Q 003295 354 VPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSV 433 (833)
Q Consensus 354 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~l 433 (833)
-|...|..++..+.+.|++++|.+.+....+.. ++....+.++.+|++.+++++...+. + .++...|..+
T Consensus 1132 -dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~i 1201 (1630)
T 1xi4_A 1132 -DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQV 1201 (1630)
T ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHH
Confidence 245555556666666666666666665555432 22222233556666666655433222 1 2234445556
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003295 434 IKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNL 513 (833)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 513 (833)
...+...|++++|..+|... ..|..+...+++.|++++|.+.+++. .+..+|..+..+|...|++
T Consensus 1202 Gd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A 1202 GDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred HHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHH
Confidence 66666666666666666553 25556666666666666666666554 2455666666666666666
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHH
Q 003295 514 KEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSL--GKMEEAIELWE 591 (833)
Q Consensus 514 ~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~~~A~~~~~ 591 (833)
..|......+ ..++..+..++..|.+.|.+++|+.+++..+... +-....|+-+...+++. ++..++.++|.
T Consensus 1267 ~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1267 RLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6665544331 1244555566666666666666666666555432 22333444444444442 33444444443
Q ss_pred HHhhCC----CCCCHhhHHHHHHHHHccCCHHHHH
Q 003295 592 ECKRTV----FGPDIYTYGVMIDGFCKADKIEEGE 622 (833)
Q Consensus 592 ~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~ 622 (833)
.-.... ...+...|..++-.|.+.|+++.|.
T Consensus 1341 ~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1341 SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 221110 0013445666666666666666665
No 15
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=5.8e-15 Score=171.12 Aligned_cols=587 Identities=10% Similarity=0.055 Sum_probs=342.0
Q ss_pred HHHHHHHhhhhcC-CCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHHcCCCCccccCCCcchHHHHHHHHhhhhcccCCc
Q 003295 99 TALKFFYFASQSC-NFRFTVRSYCLLIRLLLFSNLLSPARLLLIRLIDGKMPVLYASNPSIRHIEIASQMVDLNVTSEPA 177 (833)
Q Consensus 99 ~a~~ff~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (833)
.=.+..+|+.... +-+.+++--...++.+..+|.+.+|..++.+++..+. +++
T Consensus 966 ~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s------~fs-------------------- 1019 (1630)
T 1xi4_A 966 YRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNS------VFS-------------------- 1019 (1630)
T ss_pred HHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCC------ccc--------------------
Confidence 4456777765322 2356777778888999999999999999999985431 110
Q ss_pred chhhhHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHH
Q 003295 178 LGVQIADLLVHVYCTQFKNLGFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFST 257 (833)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 257 (833)
.....-++|+...... +.+...+...+... .....+...+...|.+++|..+|++.. ......+.
T Consensus 1020 ~n~~LqnlLi~tAIka----D~~Rv~eyI~kLd~-------~d~~eIA~Iai~lglyEEAf~IYkKa~----~~~~A~~V 1084 (1630)
T 1xi4_A 1020 EHRNLQNLLILTAIKA----DRTRVMEYINRLDN-------YDAPDIANIAISNELFEEAFAIFRKFD----VNTSAVQV 1084 (1630)
T ss_pred ccHHHHHHHHHHHHHh----ChhhHHHHHHHhhh-------ccHHHHHHHHHhCCCHHHHHHHHHHcC----CHHHHHHH
Confidence 0112222344333321 22222222222211 113345666677777777777777752 11222222
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 003295 258 AINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEK 337 (833)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 337 (833)
++. ..|++++|.++.++.. +..+|..+..++.+.|++++|++.|.+. .|...|..++..+.+.|+
T Consensus 1085 Lie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGk 1149 (1630)
T 1xi4_A 1085 LIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGN 1149 (1630)
T ss_pred HHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCC
Confidence 222 5667777777777552 4566777777777777777777777553 366667777777777777
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 003295 338 FDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEE 417 (833)
Q Consensus 338 ~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~ 417 (833)
+++|.+.|....+.. ++....+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|..
T Consensus 1150 yEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~k 1220 (1630)
T 1xi4_A 1150 WEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 1220 (1630)
T ss_pred HHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 777777777766553 34334445777777777776533332 2 24555666677777777777777777776
Q ss_pred HHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003295 418 MLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNT 497 (833)
Q Consensus 418 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 497 (833)
+ ..|..++..+++.|++++|++.+++. .+..+|..+..+|...|++..|......+. .+.
T Consensus 1221 A---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~ 1280 (1630)
T 1xi4_A 1221 V---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHA 1280 (1630)
T ss_pred h---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCH
Confidence 4 35777777777777777777777765 244667777777777777777776554322 255
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc--CChhhHHHHHHHHHHCCC----CCCHHHHH
Q 003295 498 VTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKD--GKPEEGFKLKEDMIKRGI----QPDNYTYN 571 (833)
Q Consensus 498 ~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~----~p~~~~~~ 571 (833)
..+..++..|.+.|.+++|+.+++...... .-....|+.|...+++. ++..++.+.|..-..... .-+...|.
T Consensus 1281 deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~ 1359 (1630)
T 1xi4_A 1281 DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWA 1359 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHH
Confidence 566677888888888888888887776554 22445565566666553 345555555553322100 01456677
Q ss_pred HHHHHHHhcCCHHHHHHHH-------------HHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHH
Q 003295 572 LLLHGLCSLGKMEEAIELW-------------EECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPV 638 (833)
Q Consensus 572 ~li~~~~~~g~~~~A~~~~-------------~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 638 (833)
.++-.|.+.|+++.|.... .+.... ..|+..|...+..|.. ...+++.-+...+...+.
T Consensus 1360 elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~elyykai~Fyl~--~~P~~lndLl~~l~~rlD---- 1431 (1630)
T 1xi4_A 1360 ELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLE--FKPLLLNDLLMVLSPRLD---- 1431 (1630)
T ss_pred HHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cccHHHHHHHHHHHHh--hChHHHHHHHHHhhhcCC----
Confidence 7778888888888777322 222211 3456666666666662 222333333333222111
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH------------HHHHHHHHHCCCCCC
Q 003295 639 VYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDA------------KCLFDEMRKEGLLPN 706 (833)
Q Consensus 639 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A------------~~~~~~m~~~g~~p~ 706 (833)
+...+..+.+.|++..+...++.....+ +...=..+.+.+....+++.- ..+-.++.++ +
T Consensus 1432 -~~R~V~l~~~~~~l~lik~yl~~vq~~n---~~~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La~~lekh----e 1503 (1630)
T 1xi4_A 1432 -HTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH----E 1503 (1630)
T ss_pred -hHHHHHHHHHcCChHHhHHHHHHHHHhc---chhhhHHHHHHhcCccchHHHHHHHhhccCcCHHHHHHHhhhh----h
Confidence 2344555566666666666665555332 112222222333333332211 1111112211 1
Q ss_pred hhHHHHH-HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003295 707 VACYTAL-IGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMD 785 (833)
Q Consensus 707 ~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 785 (833)
..-+.-+ ...|.+.|++++|.+++++.. .|.-.+....+.|+.+.+.+++.-..+.| +...|.+.+.
T Consensus 1504 Ll~frrIAa~ly~~n~~~~~ai~l~k~d~---------l~~dAm~~a~~S~d~e~~e~ll~~F~~~~---~~E~f~a~Ly 1571 (1630)
T 1xi4_A 1504 LIEFRRIAAYLFKGNNRWKQSVELCKKDS---------LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLF 1571 (1630)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHhcc---------CHHHHHHHHHHcCCHHHHHHHHHHHHhcC---ChhHHHHHHH
Confidence 1112222 233445588888888877643 14455677778888888888888777753 5566777777
Q ss_pred HHhcCCCHHHHHHH
Q 003295 786 GHCKGGNVEEAFKV 799 (833)
Q Consensus 786 ~~~~~g~~~~A~~~ 799 (833)
.|...-+.+-+.++
T Consensus 1572 ~cy~l~~pd~vle~ 1585 (1630)
T 1xi4_A 1572 TCYDLLRPDVVLET 1585 (1630)
T ss_pred HHhccCCchHHHHH
Confidence 77777777666654
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=3.7e-18 Score=181.82 Aligned_cols=331 Identities=14% Similarity=0.078 Sum_probs=207.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 003295 218 LKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGL 297 (833)
Q Consensus 218 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 297 (833)
+..+..+...+.+.|++++|...|+++....+.+..++..+..++...|++++|...|+++.+.... +...|..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHH
Confidence 4556667777777777777777777777445566777777777777777777777777777765322 456777777777
Q ss_pred HhcCChhHHHHHHHHHHhCCCC--CChhhHHHH------------HHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 003295 298 CRNGRLYEAFHLKEKMVLREVE--PSLITYSIL------------INGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTL 363 (833)
Q Consensus 298 ~~~g~~~~A~~~~~~m~~~~~~--p~~~t~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~l 363 (833)
.+.|++++|...|+++.+.... .+...+..+ ...+...|++++|...++++.+... .+...+..+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ 160 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELR 160 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 7777777777777777765210 133334333 4666777777777777777766532 246667777
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCh
Q 003295 364 IDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRF 443 (833)
Q Consensus 364 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~ 443 (833)
...+.+.|++++|.+.++++.+... .+..++..+...+...|++++|...++++.+.... +...+..+..
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~-------- 230 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQ-------- 230 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH--------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHH--------
Confidence 7777777777777777777776532 25667777777777777777777777777664221 1111111100
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 003295 444 NSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNT----VTSNALIHGMCEAGNLKEAGKL 519 (833)
Q Consensus 444 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~ 519 (833)
+. .......+...+.+.|++++|...++++.+.... +. ..+..+...+.+.|++++|...
T Consensus 231 ---------~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 231 ---------VK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp ---------HH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 00 0001122344556666666666666666654322 22 2344566677777777777777
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003295 520 LMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLC 578 (833)
Q Consensus 520 l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 578 (833)
+++..+..+. +...+..+...+.+.|++++|...++++++..+. +...+..+..+..
T Consensus 295 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 295 CSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Confidence 7777665433 6667777777777777777777777777765322 4445555554443
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=3.1e-16 Score=174.76 Aligned_cols=395 Identities=12% Similarity=0.018 Sum_probs=271.0
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCChhHHH
Q 003295 341 ANFVLKEMSVRGFVPNYVVYNTLIDGYCK----KGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCK----SGQMDNAE 412 (833)
Q Consensus 341 A~~~~~~m~~~g~~p~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~ 412 (833)
+...++...+.| |...+..|...|.. .+++++|...|++..+.| +...+..|...|.. .++.++|.
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 344555554432 55666666666666 677777777777766653 45566666666666 66777777
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHH
Q 003295 413 NALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCK----NGKQAEATELCFRL 488 (833)
Q Consensus 413 ~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~ 488 (833)
+.|++..+.| +...+.. +...|.. .+++++|...+++.
T Consensus 100 ~~~~~a~~~~---~~~a~~~-----------------------------------Lg~~y~~g~g~~~~~~~A~~~~~~a 141 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQN-----------------------------------LGVMYHEGNGVKVDKAESVKWFRLA 141 (490)
T ss_dssp HHHHHHHHTT---CHHHHHH-----------------------------------HHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHH-----------------------------------HHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 7777666553 3333333 4444444 45566666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHH
Q 003295 489 FEKGFTVNTVTSNALIHGMCE----AGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCK----DGKPEEGFKLKEDMIK 560 (833)
Q Consensus 489 ~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 560 (833)
.+.| +...+..|...|.. .++.++|...|++..+.| +...+..|...|.. .++.++|.+.|++..+
T Consensus 142 ~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 215 (490)
T 2xm6_A 142 AEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT 215 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 5553 45566666666666 667777777777777764 56677777777776 6777888888887777
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHHCC
Q 003295 561 RGIQPDNYTYNLLLHGLCS----LGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCK----ADKIEEGETLFNEMISKK 632 (833)
Q Consensus 561 ~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~ 632 (833)
.| +...+..+...+.. .+++++|..+|++..+.| +...+..+...|.. .++.++|...|++..+.+
T Consensus 216 ~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~ 289 (490)
T 2xm6_A 216 SG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG 289 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC
Confidence 64 45666667777765 678888888888877654 45566666666666 788888888888887664
Q ss_pred CccCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCC
Q 003295 633 MELNPVVYNTLIRAYCKI-----GNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIG---LIEDAKCLFDEMRKEGLL 704 (833)
Q Consensus 633 ~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~ 704 (833)
++..+..+...|... +++++|+..+++..+.+ +...+..+...|...| +.++|.++|++..+.|
T Consensus 290 ---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~-- 361 (490)
T 2xm6_A 290 ---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG-- 361 (490)
T ss_dssp ---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT--
T ss_pred ---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC--
Confidence 556777777777776 78888998888888765 4566777777777656 7888999999988864
Q ss_pred CChhHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC-C
Q 003295 705 PNVACYTALIGGYCK----LGQMDEAESVLQEMASINIHPNKITYTIMIGGYCK----LGDMKEAAKLLNVMAEKGIS-P 775 (833)
Q Consensus 705 p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p 775 (833)
+...+..|...|.. .++.++|.+.|++..+.| +...+..|...|.. .+++++|...|+++.+.|.. |
T Consensus 362 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 437 (490)
T 2xm6_A 362 -EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLF 437 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHH
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCc
Confidence 56778888888887 789999999999988865 57788888888887 88999999999999886532 2
Q ss_pred -CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 776 -DSITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 776 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
+......+...+. .+.++|.+..++..+
T Consensus 438 ~~~~a~~~l~~~~~--~~~~~a~~~a~~~~~ 466 (490)
T 2xm6_A 438 GTENRNITEKKLTA--KQLQQAELLSQQYIE 466 (490)
T ss_dssp HHHHHHHHHTTSCH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCH--hHHHHHHHHHHHHHH
Confidence 3344444444333 233444444444444
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=4.3e-16 Score=173.63 Aligned_cols=354 Identities=13% Similarity=0.030 Sum_probs=291.2
Q ss_pred CcccHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCH
Q 003295 426 NQGAYTSVIKWLCI----NSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCK----NGKQAEATELCFRLFEKGFTVNT 497 (833)
Q Consensus 426 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~ 497 (833)
+...+..+...|.. .+++++|+..++.....| +...+..+...|.. .++.++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 33444444444444 455555555555555442 34455666667776 788888888888888764 67
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHHCCCCCCHHH
Q 003295 498 VTSNALIHGMCE----AGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCK----DGKPEEGFKLKEDMIKRGIQPDNYT 569 (833)
Q Consensus 498 ~~~~~li~~~~~----~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~ 569 (833)
..+..|...|.. .+++++|...|++..+.| +...+..|...|.. .++.++|++.|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 788889999988 889999999999999886 67788888888887 789999999999999875 6788
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCccCHHHHH
Q 003295 570 YNLLLHGLCS----LGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCK----ADKIEEGETLFNEMISKKMELNPVVYN 641 (833)
Q Consensus 570 ~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 641 (833)
+..+...|.. .++.++|.++|++..+.| +...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 8889999988 899999999999998865 66778888888876 889999999999998874 566777
Q ss_pred HHHHHHHH----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCChhHHHH
Q 003295 642 TLIRAYCK----IGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNI-----GLIEDAKCLFDEMRKEGLLPNVACYTA 712 (833)
Q Consensus 642 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ 712 (833)
.+...|.. .++.++|++.|++..+.| +...+..+...|... ++.++|..+|++..+.| +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 88888887 899999999999998875 566777888888887 89999999999999875 4567778
Q ss_pred HHHHHHhcC---ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003295 713 LIGGYCKLG---QMDEAESVLQEMASINIHPNKITYTIMIGGYCK----LGDMKEAAKLLNVMAEKGISPDSITYNVFMD 785 (833)
Q Consensus 713 li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 785 (833)
+...|...| +.++|.+.|++..+.| +...+..+...|.. .+++++|.+.++++.+.| +...+..|..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888887766 7899999999999864 68889999999998 899999999999999975 6778899999
Q ss_pred HHhc----CCCHHHHHHHHHHHHHCCCC
Q 003295 786 GHCK----GGNVEEAFKVCDRMLSEGLS 809 (833)
Q Consensus 786 ~~~~----~g~~~~A~~~~~~m~~~g~~ 809 (833)
.|.. .++.++|..+|++..+.|..
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 9988 89999999999999997644
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=1.8e-16 Score=178.52 Aligned_cols=434 Identities=10% Similarity=0.031 Sum_probs=260.3
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 003295 206 FSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAP 285 (833)
Q Consensus 206 f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 285 (833)
|+..++.++. +..+|..++. +.+.|++++|..+|++++.-.|.+...|...+..+.+.|++++|..+|+++... .|
T Consensus 2 le~al~~~P~-~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p 77 (530)
T 2ooe_A 2 AEKKLEENPY-DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VL 77 (530)
T ss_dssp HHHHHHHCTT-CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CC
T ss_pred hhhHhhhCCC-CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC
Confidence 4444454444 6778888887 467888888888888888667777888888888888888888888888888875 36
Q ss_pred ChhhHHHHHHHH-HhcCChhHHHH----HHHHHHhC-CCCC-ChhhHHHHHHHHHh---------cCChhHHHHHHHHHH
Q 003295 286 NVVTYNNIIHGL-CRNGRLYEAFH----LKEKMVLR-EVEP-SLITYSILINGLIK---------LEKFDDANFVLKEMS 349 (833)
Q Consensus 286 ~~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~~-~~~p-~~~t~~~li~~~~~---------~g~~~~A~~~~~~m~ 349 (833)
++..|..++... ...|++++|.+ +|++.... |..| +...|...+....+ .|++++|..+|++..
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 766676666433 34577777665 66655432 3333 34566666655443 456666666666666
Q ss_pred HCCCCCCh---hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHH------H
Q 003295 350 VRGFVPNY---VVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEML------S 420 (833)
Q Consensus 350 ~~g~~p~~---~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~------~ 420 (833)
+. |+. ..|.......-..|. .+...++. -+.+++++|..++.++. +
T Consensus 158 ~~---P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~ 212 (530)
T 2ooe_A 158 VN---PMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLD 212 (530)
T ss_dssp TS---CCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hc---hhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhc
Confidence 52 221 122111110000000 00001110 01234455555544422 1
Q ss_pred CC---CCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCH----HHHHHHHHHH
Q 003295 421 RG---LSINQG-AYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCK----NGKQ----AEATELCFRL 488 (833)
Q Consensus 421 ~g---~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~----~~A~~~~~~~ 488 (833)
.. ++|+.. .+. ... ..+...+..... .++. +++...|++.
T Consensus 213 ~~~~~~~p~~~~~~~-------------~~~---------------~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~a 264 (530)
T 2ooe_A 213 RNAPSVPPQNTPQEA-------------QQV---------------DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQC 264 (530)
T ss_dssp SSSCCCCCC--CCHH-------------HHH---------------HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHH
T ss_pred cccccCCCCCChhHH-------------HHH---------------HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHH
Confidence 10 111100 000 000 111111111111 1122 3556667666
Q ss_pred HHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHhh-CCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 003295 489 FEKGFTVNTVTSNALIHGMCE-------AGNLK-------EAGKLLMEMLQ-RGLILDKVTYNTLILGCCKDGKPEEGFK 553 (833)
Q Consensus 489 ~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~l~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~ 553 (833)
+.. .+.+...|..++..+.+ .|+++ +|..+|++..+ ..+ -+...|..++..+.+.|++++|..
T Consensus 265 l~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p-~~~~l~~~~~~~~~~~g~~~~A~~ 342 (530)
T 2ooe_A 265 LLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEESRMKYEKVHS 342 (530)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS-SCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHhcCCHHHHHH
Confidence 665 23466777777777665 57766 78888888776 322 257777778888888888888888
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH-HHccCCHHHHHHHHHHHHHC
Q 003295 554 LKEDMIKRGIQPD-NYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDG-FCKADKIEEGETLFNEMISK 631 (833)
Q Consensus 554 ~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~ 631 (833)
+|+++++.... + ...|..++..+.+.|++++|.++|++..+.. +.+...|...+.. +...|+.++|..+|+..++.
T Consensus 343 ~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 343 IYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 420 (530)
T ss_dssp HHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 88888875322 3 2467777777777888888888888877652 1122223222222 33578888888888888776
Q ss_pred CCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003295 632 KMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGI-LP--TSVTYSSLIHGLCNIGLIEDAKCLFDEMRKE 701 (833)
Q Consensus 632 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 701 (833)
.+. ++..|..++..+.+.|+.++|..+|++....+. .| ....|...+......|+.+.+..++.++.+.
T Consensus 421 ~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 421 YGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 443 677888888888888888888888888887632 22 2336767777777788888888888888764
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=2.3e-16 Score=177.80 Aligned_cols=416 Identities=11% Similarity=0.086 Sum_probs=270.7
Q ss_pred hhHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHH
Q 003295 181 QIADLLVHVYCTQFKNLGFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAIN 260 (833)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 260 (833)
..+..++. +. +.|+++.|..+|+++.+..+. +...|...+..+.+.|++++|..+|++++... |++..|...+.
T Consensus 14 ~~w~~l~~-~~---~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-p~~~lw~~~~~ 87 (530)
T 2ooe_A 14 DAWSILIR-EA---QNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-LHIDLWKCYLS 87 (530)
T ss_dssp HHHHHHHH-HH---HSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-CCHHHHHHHHH
T ss_pred HHHHHHHH-HH---HhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CChHHHHHHHH
Confidence 34445555 23 578999999999999987654 78899999999999999999999999999644 58888887775
Q ss_pred HH-HhcCChhHHHH----HHHHHHHc-CCCC-ChhhHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCCCh--
Q 003295 261 AF-CKRGRIEDAIG----LFTKMEEL-GIAP-NVVTYNNIIHGLCR---------NGRLYEAFHLKEKMVLREVEPSL-- 322 (833)
Q Consensus 261 ~~-~~~g~~~~A~~----~~~~m~~~-g~~p-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~-- 322 (833)
.. ...|++++|.+ +|++.... |..| +...|...+....+ .|++++|+.+|++..+. |+.
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~ 164 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINI 164 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhH
Confidence 33 45688888776 77776543 5444 45678888877655 68999999999999873 332
Q ss_pred -hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH------HhCC---CCCC-
Q 003295 323 -ITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDM------VSKG---MSPN- 391 (833)
Q Consensus 323 -~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m------~~~g---~~p~- 391 (833)
..|..........|. .+...++. .+.+++++|..++.++ .+.. +.|+
T Consensus 165 ~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~ 222 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN 222 (530)
T ss_dssp HHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred HHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 233322221101110 11111111 1234566666666552 2221 2333
Q ss_pred -------hhHHHHHHHHHHhc----CCh----hHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003295 392 -------SVTFNSLIHGFCKS----GQM----DNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLR 456 (833)
Q Consensus 392 -------~~~~~~li~~~~~~----g~~----~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 456 (833)
...|...+...... ++. ++|..+|+++... .+.+..
T Consensus 223 ~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~---------------------------- 273 (530)
T 2ooe_A 223 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPD---------------------------- 273 (530)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHH----------------------------
T ss_pred ChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHH----------------------------
Confidence 12343333222211 111 2444555555443 122233
Q ss_pred CCCCChhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003295 457 NLRPGDGLLTLLVSGLCK-------NGKQA-------EATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLME 522 (833)
Q Consensus 457 ~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~ 522 (833)
.+..++..+.+ .|+++ +|..++++.++.-.+.+...|..++..+.+.|++++|..+|++
T Consensus 274 -------~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~ 346 (530)
T 2ooe_A 274 -------IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNR 346 (530)
T ss_dssp -------HHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 33333333332 45554 7777777777632344677888888888888888888888888
Q ss_pred HhhCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhhCCCCC
Q 003295 523 MLQRGLILD-KVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHG-LCSLGKMEEAIELWEECKRTVFGP 600 (833)
Q Consensus 523 m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~ 600 (833)
+.+..+. + ...|..++..+.+.|+.++|.++|++.++.... +...+...+.. +...|+.++|..+|+...+.. +.
T Consensus 347 al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~ 423 (530)
T 2ooe_A 347 LLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GD 423 (530)
T ss_dssp HHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TT
T ss_pred HhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CC
Confidence 8876433 3 357888888888888888888888888876322 22333222222 335788899999998887653 34
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCc-c--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003295 601 DIYTYGVMIDGFCKADKIEEGETLFNEMISKKME-L--NPVVYNTLIRAYCKIGNTTAAFRLSNDMKSR 666 (833)
Q Consensus 601 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 666 (833)
+...|..++..+.+.|+.++|..+|++.+..++. | ....|...+......|+.+.+..+++++.+.
T Consensus 424 ~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 424 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5778888888888889999999999988886432 2 2457888888888889999998888888765
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=2e-17 Score=173.96 Aligned_cols=289 Identities=12% Similarity=-0.011 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003295 497 TVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHG 576 (833)
Q Consensus 497 ~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 576 (833)
...+..++..+...|++++|..+|+++.+..+. +...+..++..+...|++++|...++++++.... +...+..+...
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 99 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGCY 99 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHH
Confidence 333444444444555555555555555444332 3333444444455555555555555555544222 34445555555
Q ss_pred HHhcC-CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHH
Q 003295 577 LCSLG-KMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTA 655 (833)
Q Consensus 577 ~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 655 (833)
+...| ++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHH
Confidence 55555 5555555555555432 223444555555566666666666666665554333 34445556666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCChhHHHHHHHHHHhcCChhHHH
Q 003295 656 AFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEG--------LLPNVACYTALIGGYCKLGQMDEAE 727 (833)
Q Consensus 656 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~~p~~~~~~~li~~~~~~g~~~~A~ 727 (833)
|.+.+++..+.. +.+...+..+...+...|++++|...++++.+.. .+.+..++..+...+.+.|++++|.
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 666666666553 3355666666666777777777777776666531 1223456777777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH-hcCCCH
Q 003295 728 SVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISP-DSITYNVFMDGH-CKGGNV 793 (833)
Q Consensus 728 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~-~~~g~~ 793 (833)
..++++.+.. +.+...|..++.+|.+.|++++|.+.++++.+. .| +...+..+..++ ...|+.
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhCch
Confidence 7777777643 445667777777777777888887777777763 34 566677777766 455554
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.2e-17 Score=175.67 Aligned_cols=285 Identities=12% Similarity=0.011 Sum_probs=143.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 003295 461 GDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLIL 540 (833)
Q Consensus 461 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~ 540 (833)
+...+..++..+...|++++|.++++++.+... .+...+..++..+...|++++|...++++.+..+. +...|..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 334444555555555555555555555554422 23334444445555555555555555555554333 4445555555
Q ss_pred HHHhcC-ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHH
Q 003295 541 GCCKDG-KPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIE 619 (833)
Q Consensus 541 ~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 619 (833)
.+...| ++++|...++++++.... +...+..+...+...|++++|...++++.+.. +.+...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 555555 555555555555544322 34445555555555555555555555555432 122334444555555555555
Q ss_pred HHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCCHHHH
Q 003295 620 EGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRG--------ILPTSVTYSSLIHGLCNIGLIEDA 691 (833)
Q Consensus 620 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~~~A 691 (833)
+|...++++.+..+. +...+..+...+...|++++|...+++..+.. .+....++..+...+...|++++|
T Consensus 177 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 555555555554332 44555555555555555555555555554321 022234455555555555555555
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003295 692 KCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGY 752 (833)
Q Consensus 692 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 752 (833)
...++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.. +.+...+..+..++
T Consensus 256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 55555555432 2234455555555555555555555555555432 33444555555444
No 23
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.79 E-value=1.2e-19 Score=203.57 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHH---cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHH
Q 003295 251 DVFLFSTAINAFCKRGRIEDAIGLFTKMEE---LGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSI 327 (833)
Q Consensus 251 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 327 (833)
-..|||++|++||+.|++++|.++|.+|.+ .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||++|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345666666666666666666666666543 35666777777777777777777777777777766666677777777
Q ss_pred HHHHHHhcCCh-hHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc
Q 003295 328 LINGLIKLEKF-DDANFVLKEMSVRGFVPNYVVYNTLIDGYCKK 370 (833)
Q Consensus 328 li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~ 370 (833)
||+++|+.|+. ++|.++|++|.++|+.||.++|++++.++.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 77776666663 56666677776667667777776666555444
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=1.3e-17 Score=174.10 Aligned_cols=282 Identities=13% Similarity=0.115 Sum_probs=132.0
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 003295 195 KNLGFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGL 274 (833)
Q Consensus 195 ~~~~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 274 (833)
+.|++++|.+.++++. ...+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3567889999998872 3459999999999999999999999653 6777899999999999999999998
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 003295 275 FTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFV 354 (833)
Q Consensus 275 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 354 (833)
++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|...|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 8777764 4567889999999999999999988874 377789999999999999999999999977
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHH
Q 003295 355 PNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVI 434 (833)
Q Consensus 355 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li 434 (833)
..|..|+.++++.|++++|.+.++++ .+..+|..++.+|+..|+++.|...... +..++.-...++
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv 214 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELI 214 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHH
Confidence 36999999999999999999999988 2788999999999999999999654443 223444466788
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHH
Q 003295 435 KWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKN--GKQAEATELCFRLFEKGFTV------NTVTSNALIHG 506 (833)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~g~~~------~~~~~~~li~~ 506 (833)
..|.+.|++++|+.+++..+... +.....++-+...|++- +++.+.++.|..-+ .+++ +...|..+...
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999888665 45566777777666654 34555555554321 2222 45678888888
Q ss_pred HHhcCCHHHHHHH
Q 003295 507 MCEAGNLKEAGKL 519 (833)
Q Consensus 507 ~~~~g~~~~A~~~ 519 (833)
|.+.++++.|...
T Consensus 292 y~~~~e~d~A~~t 304 (449)
T 1b89_A 292 YDKYEEYDNAIIT 304 (449)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHhhchHHHHHHH
Confidence 8888999888764
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=2.2e-17 Score=176.81 Aligned_cols=305 Identities=10% Similarity=-0.087 Sum_probs=187.4
Q ss_pred cCCHHHHHH-HHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhh
Q 003295 475 NGKQAEATE-LCFRLFEKGF---TVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEE 550 (833)
Q Consensus 475 ~g~~~~A~~-~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 550 (833)
.|++++|.+ .+++..+... ..+...+..+...+.+.|++++|...|+++.+..+. +...+..+...+.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHH
Confidence 355555555 5554433211 112345566666677777777777777777666544 56666666777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 003295 551 GFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMIS 630 (833)
Q Consensus 551 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 630 (833)
|...++++++.... +..++..+...+...|++++|...++++.+.... +...+..+.. ....
T Consensus 117 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~--------- 178 (368)
T 1fch_A 117 AISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEE-------GAGG--------- 178 (368)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC------------------------
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH-------Hhhh---------
Confidence 77777776665432 5666666666777777777777777766654311 1111111100 0000
Q ss_pred CCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhH
Q 003295 631 KKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILP-TSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVAC 709 (833)
Q Consensus 631 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 709 (833)
.. ....+..+.. +...|++++|...++++.+..... +..++..+...+...|++++|...++++.+.. +.+...
T Consensus 179 --~~-~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~ 253 (368)
T 1fch_A 179 --AG-LGPSKRILGS-LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLL 253 (368)
T ss_dssp ----------CTTHH-HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred --hc-ccHHHHHHHH-HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHH
Confidence 00 0011112222 236777888888888777653221 46777778888888888888888888887752 335677
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------CHHH
Q 003295 710 YTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISP----------DSIT 779 (833)
Q Consensus 710 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----------~~~~ 779 (833)
|..+...+.+.|++++|...++++.+.. +.+..+|..++.+|.+.|++++|...++++++..... ...+
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 332 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 332 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHH
Confidence 7888888888888888888888887753 4567788888888888888888888888887632110 1577
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHH
Q 003295 780 YNVFMDGHCKGGNVEEAFKVCDRML 804 (833)
Q Consensus 780 ~~~l~~~~~~~g~~~~A~~~~~~m~ 804 (833)
|..++.+|...|++++|..++++.+
T Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 333 WSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHhCChHhHHHhHHHHH
Confidence 8888888888888888887776443
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=3.4e-17 Score=170.96 Aligned_cols=239 Identities=13% Similarity=0.109 Sum_probs=87.6
Q ss_pred hcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 003295 230 KANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHL 309 (833)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 309 (833)
+.|++++|.++++++ ++..+|+.++.++.+.|++++|.+.|.+. +|..+|..++..+...|++++|+..
T Consensus 15 ~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 568899999999988 23348889999999999999999999653 4777899999999999999999997
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 003295 310 KEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMS 389 (833)
Q Consensus 310 ~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 389 (833)
++...+. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|+.+.+.|...|++++|...|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 7776664 4567888899999999999999888774 367779999999999999999999999866
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHH
Q 003295 390 PNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLV 469 (833)
Q Consensus 390 p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 469 (833)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|+..|+++.|...... +...+.-...++
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv 214 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELI 214 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHH
Confidence 36888999999999999999999887 2677888888888888888888443332 222222233455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003295 470 SGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCE 509 (833)
Q Consensus 470 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 509 (833)
..|.+.|.+++|..+++..+... +.....|+-|...|++
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 56666666666666666655443 3344455555555544
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=2.8e-17 Score=175.91 Aligned_cols=295 Identities=11% Similarity=-0.023 Sum_probs=180.6
Q ss_pred cCCHHHHHH-HHHHHhhCCCC---CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003295 510 AGNLKEAGK-LLMEMLQRGLI---LDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEE 585 (833)
Q Consensus 510 ~g~~~~A~~-~l~~m~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 585 (833)
.|++++|.. .+++..+.... .+...+..+...+.+.|++++|...++++++.... +..++..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHH
Confidence 345555555 55544332211 12333445555555555555555555555554322 44455555555555555555
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003295 586 AIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKS 665 (833)
Q Consensus 586 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 665 (833)
|...|+++.+.. +.+..++..+...|...|++++|...++++.+..+. +...+..+... . .
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~----------~ 177 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------A----------G 177 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC------------------------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------h----------h
Confidence 555555555432 223444555555555555555555555555444322 11111000000 0 0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 003295 666 RGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLP--NVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKI 743 (833)
Q Consensus 666 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 743 (833)
. ..+. ..+.. +..+...|++++|...++++.+.. +. +..++..+...|.+.|++++|...++++.+.. +.+..
T Consensus 178 ~-~~~~-~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 252 (368)
T 1fch_A 178 G-AGLG-PSKRI-LGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYL 252 (368)
T ss_dssp ----------CT-THHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred h-hccc-HHHHH-HHHHhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHH
Confidence 0 0000 01112 333348899999999999999863 22 47889999999999999999999999999863 55688
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC----------CHH
Q 003295 744 TYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSL----------DEI 813 (833)
Q Consensus 744 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p----------~~~ 813 (833)
+|..++..+...|++++|+..++++++.. +.+..++..++..|.+.|++++|...++++++..... ...
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 331 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhH
Confidence 99999999999999999999999999853 3467899999999999999999999999998732111 157
Q ss_pred HHHHHHHhhccCCCCcc
Q 003295 814 TYTTLIDGWQSSTITNQ 830 (833)
Q Consensus 814 ~~~~l~~~~~~~~~~~~ 830 (833)
.|..+...+...+..+.
T Consensus 332 ~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 332 IWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHhCChHh
Confidence 88888888876655544
No 28
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.77 E-value=3.1e-19 Score=200.19 Aligned_cols=151 Identities=12% Similarity=0.121 Sum_probs=126.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHH
Q 003295 286 NVVTYNNIIHGLCRNGRLYEAFHLKEKMVL---REVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNT 362 (833)
Q Consensus 286 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~ 362 (833)
-..|||++|++||+.|++++|.++|++|.+ .|+.||++|||+||+|||+.|++++|.++|++|.+.|+.||++|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 357999999999999999999999988764 48999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCh-HHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC------cccHHHHHH
Q 003295 363 LIDGYCKKGNI-SEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSIN------QGAYTSVIK 435 (833)
Q Consensus 363 li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~------~~~~~~li~ 435 (833)
||+++|+.|+. ++|.++|++|.++|+.||.++|+.++.+..+.+ +++..+++ ..+..|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999985 789999999999999999999999987766543 33333333 3344443 444455555
Q ss_pred HHHhcC
Q 003295 436 WLCINS 441 (833)
Q Consensus 436 ~~~~~g 441 (833)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 555544
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=1.6e-17 Score=177.77 Aligned_cols=267 Identities=10% Similarity=-0.042 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 003295 532 KVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDG 611 (833)
Q Consensus 532 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 611 (833)
...+..+...+.+.|++++|...|+++++.... +..++..+...+...|++++|...|+++.+.. +.+..++..+...
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 344556666666666666666666666665332 55666666666666666666666666666543 2345566666666
Q ss_pred HHccCCHHHHHHHHHHHHHCCCc---------cCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHH
Q 003295 612 FCKADKIEEGETLFNEMISKKME---------LNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGIL-PTSVTYSSLIHG 681 (833)
Q Consensus 612 ~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~ 681 (833)
|...|++++|...++++.+..+. .....+..+...+.+.|++++|.+.++++.+.... .+..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 66677777777776666654221 01223444577888888999999999988876422 167788888999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003295 682 LCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEA 761 (833)
Q Consensus 682 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 761 (833)
+...|++++|...|+++.+.. +.+..+|..+..+|.+.|++++|...++++.+.. +.+..+|..++.+|...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999988863 4467888999999999999999999999998753 45688899999999999999999
Q ss_pred HHHHHHHHHcCC---CC--------CHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003295 762 AKLLNVMAEKGI---SP--------DSITYNVFMDGHCKGGNVEEAFKVCDR 802 (833)
Q Consensus 762 ~~~~~~m~~~g~---~p--------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 802 (833)
...++++++..- .+ +..+|..+..++...|+.+.|.+..++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999887320 00 257889999999999999988776654
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=2.8e-15 Score=166.42 Aligned_cols=391 Identities=13% Similarity=-0.022 Sum_probs=191.1
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHC-----C---CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC---C--
Q 003295 392 SVTFNSLIHGFCKSGQMDNAENALEEMLSR-----G---LSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRN---L-- 458 (833)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~A~~~l~~~~~~-----g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~-- 458 (833)
...||.|...+...|++++|++.|++..+. + -+....+|+.+...|...|++++|...+++..... .
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345566666666666666666666554431 0 11123455566666666666666666665544310 0
Q ss_pred -CC-ChhhHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHhhCCCCCC
Q 003295 459 -RP-GDGLLTLLVSGLCK--NGKQAEATELCFRLFEKGFTVNTVTSNALIHGM---CEAGNLKEAGKLLMEMLQRGLILD 531 (833)
Q Consensus 459 -~~-~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~---~~~g~~~~A~~~l~~m~~~g~~~~ 531 (833)
.+ ...++.....++.. .+++++|.+.|++.++..+. +...+..+...+ ...++.++|++.+++..+.++. +
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-N 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-C
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-c
Confidence 01 11223333223322 23455555555555554221 333343333332 2334445555555555554333 3
Q ss_pred HHHHHHHHHHHHh----cCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 003295 532 KVTYNTLILGCCK----DGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGV 607 (833)
Q Consensus 532 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 607 (833)
...+..+...+.. .++.++|.+.+++....... +...+..+...+...|++++|...++++.+.. +.+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 4444444333332 23445555555555544322 44445555555555555555555555555432 222334444
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003295 608 MIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGL 687 (833)
Q Consensus 608 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 687 (833)
+...|...+....+ .. ...........+..++|...+++..+.. +.+..++..+...+...|+
T Consensus 287 lg~~y~~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 287 IGCCYRAKVFQVMN---------LR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhh---------HH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhcc
Confidence 43333211100000 00 0000000111234567888888877764 3456678888899999999
Q ss_pred HHHHHHHHHHHHHCCCCCCh--hHHHHHHH-HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003295 688 IEDAKCLFDEMRKEGLLPNV--ACYTALIG-GYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKL 764 (833)
Q Consensus 688 ~~~A~~~~~~m~~~g~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 764 (833)
+++|+..|++.++....+.. ..+..+.. .+...|+.++|+..+++..+. .|+...... ....+.++
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~ 418 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKI 418 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHH
Confidence 99999999999885422221 12233332 234678999999999998874 555433222 23445566
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC-CCCCCHHHH
Q 003295 765 LNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLSE-GLSLDEITY 815 (833)
Q Consensus 765 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~ 815 (833)
+++.++.. +.+..+|..|+..|...|++++|++.|++.++. ...|+..+|
T Consensus 419 ~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 419 AKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHC-C-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 66666643 446788999999999999999999999999985 344555444
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=2.4e-16 Score=168.56 Aligned_cols=265 Identities=11% Similarity=-0.013 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003295 497 TVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHG 576 (833)
Q Consensus 497 ~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 576 (833)
...+..++..+.+.|++++|...|+++.+..+. +..+|..+...+.+.|++++|...|+++++.... +..++..+...
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 344666666777777777777777777666544 6667777777777777777777777777765332 56677777777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCC-----------HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc-CHHHHHHHH
Q 003295 577 LCSLGKMEEAIELWEECKRTVFGPD-----------IYTYGVMIDGFCKADKIEEGETLFNEMISKKMEL-NPVVYNTLI 644 (833)
Q Consensus 577 ~~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li 644 (833)
+...|++++|...++++.+.. |+ ...+..+...+.+.|++++|...++++.+..+.. +..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 777777777777777776542 22 2233445778888999999999999998875432 688899999
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChh
Q 003295 645 RAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMD 724 (833)
Q Consensus 645 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 724 (833)
..|.+.|++++|.+.++++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+..++..+..+|.+.|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 99999999999999999998874 4578889999999999999999999999998863 345788999999999999999
Q ss_pred HHHHHHHHHHhCC---CCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003295 725 EAESVLQEMASIN---IHP--------NKITYTIMIGGYCKLGDMKEAAKLLNV 767 (833)
Q Consensus 725 ~A~~~~~~m~~~g---~~p--------~~~~~~~li~~~~~~g~~~~A~~~~~~ 767 (833)
+|...|+++.+.. ..+ +..+|..+..++...|+.+.|.....+
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999988631 011 357899999999999999998887665
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=3.6e-15 Score=165.50 Aligned_cols=383 Identities=11% Similarity=-0.049 Sum_probs=249.7
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhC-------CCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC----C-
Q 003295 357 YVVYNTLIDGYCKKGNISEALKIRDDMVSK-------GMSP-NSVTFNSLIHGFCKSGQMDNAENALEEMLSRG----L- 423 (833)
Q Consensus 357 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p-~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g----~- 423 (833)
...||.|...+...|++++|++.|++..+. ...| ..++|+.+...|...|++++|...++++.+.. -
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 556888888888888888888888776531 1122 45688999999999999999999998876521 1
Q ss_pred -C-CCcccHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCCChhhHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCC
Q 003295 424 -S-INQGAYTSVIKWLCI--NSRFNSALHFTKEMLLRNLRPGDGLLTLLVSG---LCKNGKQAEATELCFRLFEKGFTVN 496 (833)
Q Consensus 424 -~-~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~g~~~~ 496 (833)
. ....++.....++.. .+++++|++.|++.+..++. +...+..+... +...++.++|++.+++.++..+ .+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cc
Confidence 1 123445555555554 45799999999999987643 33444444443 4567888999999999888643 36
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHH
Q 003295 497 TVTSNALIHGMCE----AGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNL 572 (833)
Q Consensus 497 ~~~~~~li~~~~~----~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 572 (833)
..++..+...+.. .+++++|.+.+++.....+. +...+..+...+...|++++|...+++.++..+. +..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHH
Confidence 6677666655554 46788999999999888665 7888999999999999999999999999987544 6677777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCC
Q 003295 573 LLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGN 652 (833)
Q Consensus 573 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 652 (833)
+..+|...+....+... ..........+..++|...+++..+..+. +..++..+...|...|+
T Consensus 287 lg~~y~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRE----------------NGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhHHH----------------HHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhcc
Confidence 77666432211111000 00001111123456788888887776544 56677788888888999
Q ss_pred hHHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHH
Q 003295 653 TTAAFRLSNDMKSRGILPTSV--TYSSLIH-GLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESV 729 (833)
Q Consensus 653 ~~~A~~~~~~m~~~~~~p~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 729 (833)
+++|.+.|++..+....+... .+..+.. .....|+.++|+..|.+.++. .|+...... ..+.+.++
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~ 418 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKI 418 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHH
Confidence 999999998888764333221 2222222 234678899999999988884 565433222 22344556
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003295 730 LQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKG 772 (833)
Q Consensus 730 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 772 (833)
+++..+.+ +.+..+|..++.+|...|++++|++.|+++++.|
T Consensus 419 ~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 419 AKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 66666543 5667789999999999999999999999998854
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.73 E-value=5.5e-16 Score=162.68 Aligned_cols=278 Identities=11% Similarity=-0.078 Sum_probs=200.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003295 497 TVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHG 576 (833)
Q Consensus 497 ~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 576 (833)
...+..+...+...|++++|..+|+++.+..+. +...+..+...+...|++++|...++++++.... +..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHH
Confidence 345667777788888888888888888776554 6777777778888888888888888888776432 56677777777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHH-HH-HHHHcCChH
Q 003295 577 LCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTL-IR-AYCKIGNTT 654 (833)
Q Consensus 577 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~ 654 (833)
+...|++++|.+.++++.+... .+...+..+.... |+......+ .. .+...|+++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTST-TTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHH
Confidence 7777888888887777776531 1222222211000 011111122 11 256677888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003295 655 AAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMA 734 (833)
Q Consensus 655 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 734 (833)
+|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.
T Consensus 156 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888888887764 3467788888888888899999999888888753 3456788888889999999999999999988
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------------HHHHHHHHHHHhcCCCHHHHHHHHH
Q 003295 735 SINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPD-------------SITYNVFMDGHCKGGNVEEAFKVCD 801 (833)
Q Consensus 735 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~ 801 (833)
+.. +.+..+|..++..|...|++++|.+.++++.+. .|+ ..+|..++.++.+.|++++|..+++
T Consensus 234 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 234 DIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 753 556788889999999999999999999998874 343 6788899999999999999988886
Q ss_pred HHH
Q 003295 802 RML 804 (833)
Q Consensus 802 ~m~ 804 (833)
+.+
T Consensus 311 ~~l 313 (327)
T 3cv0_A 311 QNV 313 (327)
T ss_dssp CCS
T ss_pred HHH
Confidence 544
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=1.1e-15 Score=160.24 Aligned_cols=281 Identities=12% Similarity=-0.037 Sum_probs=215.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 003295 461 GDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLIL 540 (833)
Q Consensus 461 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~ 540 (833)
+...+..+...+...|++++|..+++++.+... .+...+..++..+...|++++|...++++.+..+. +..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHH
Confidence 344567788899999999999999999998743 47889999999999999999999999999988655 7889999999
Q ss_pred HHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH--HHHccCCH
Q 003295 541 GCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMID--GFCKADKI 618 (833)
Q Consensus 541 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~ 618 (833)
.+...|++++|.+.++++.+.... +...+..+.... |+......+.. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccH
Confidence 999999999999999999987433 222222221110 11111122212 25667788
Q ss_pred HHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003295 619 EEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEM 698 (833)
Q Consensus 619 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 698 (833)
++|...++++.+..+. +...+..+...+.+.|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888776544 67788888888888888888888888888764 446778888888899999999999999988
Q ss_pred HHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003295 699 RKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHP------------NKITYTIMIGGYCKLGDMKEAAKLLN 766 (833)
Q Consensus 699 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p------------~~~~~~~li~~~~~~g~~~~A~~~~~ 766 (833)
.+.. +.+...+..+...+.+.|++++|.+.++++.+.. +. +..+|..+..++.+.|++++|..+++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 8753 3457788888899999999999999999888642 22 46788899999999999999998887
Q ss_pred HHHH
Q 003295 767 VMAE 770 (833)
Q Consensus 767 ~m~~ 770 (833)
+.++
T Consensus 311 ~~l~ 314 (327)
T 3cv0_A 311 QNVE 314 (327)
T ss_dssp CCSH
T ss_pred HHHH
Confidence 6543
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=2.4e-15 Score=154.30 Aligned_cols=249 Identities=11% Similarity=0.049 Sum_probs=132.0
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003295 508 CEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAI 587 (833)
Q Consensus 508 ~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 587 (833)
...|+++.|+..+++.....+.........+..+|...|++++|+..++. .-.|+..++..+...+...++.++|+
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHH
Confidence 34455555555555443332111112334445555555555555544432 12334445555555555555566666
Q ss_pred HHHHHHhhCCCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003295 588 ELWEECKRTVFGP-DIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSR 666 (833)
Q Consensus 588 ~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 666 (833)
+.++++...+..| +...+..+...+.+.|++++|++.+++ ..+...+..++..+.+.|++++|.+.++++.+.
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 6665555543222 334444445555566666666665554 235555666666666666666666666666554
Q ss_pred CCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 003295 667 GILPTSVTY---SSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKI 743 (833)
Q Consensus 667 ~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 743 (833)
. |+.... ..++..+...|++++|..+|+++.+. .+.+...|+.+..++.+.|++++|...++++.+.. +.+..
T Consensus 160 ~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~ 235 (291)
T 3mkr_A 160 D--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPE 235 (291)
T ss_dssp C--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred C--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 2 332111 11222233346666666666666665 24455666666666666666666666666666543 44555
Q ss_pred HHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 003295 744 TYTIMIGGYCKLGDMKE-AAKLLNVMAE 770 (833)
Q Consensus 744 ~~~~li~~~~~~g~~~~-A~~~~~~m~~ 770 (833)
++..++..+...|+.++ +.++++++.+
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 66666666666666654 4566666665
No 36
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=3.6e-15 Score=152.89 Aligned_cols=256 Identities=12% Similarity=0.066 Sum_probs=210.1
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHH
Q 003295 540 LGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIE 619 (833)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 619 (833)
.-....|++..|+...+........+.......+..+|...|+++.|+..++. .-+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 44556899999999988765542222234556678999999999999986654 23567888899999999999999
Q ss_pred HHHHHHHHHHHCCCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003295 620 EGETLFNEMISKKMEL-NPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEM 698 (833)
Q Consensus 620 ~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 698 (833)
+|++.++++...+..| +...+..+...+.+.|++++|++.+++ +.+...+..++..+.+.|++++|.+.++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999876434 667788888999999999999999987 467888999999999999999999999999
Q ss_pred HHCCCCCChhHH---HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003295 699 RKEGLLPNVACY---TALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISP 775 (833)
Q Consensus 699 ~~~g~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 775 (833)
.+. .|+.... ..++..+...|++++|..+|+++.+. .+.+...|+.++.++.+.|++++|.+.++++++.. +-
T Consensus 157 ~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 157 QDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred Hhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 986 3654322 22334445568999999999999987 37789999999999999999999999999999853 33
Q ss_pred CHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHCCCCCC
Q 003295 776 DSITYNVFMDGHCKGGNVEE-AFKVCDRMLSEGLSLD 811 (833)
Q Consensus 776 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~g~~p~ 811 (833)
+..++..++..+...|+.++ +.++++++++ +.|+
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~ 267 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRS 267 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTT
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCC
Confidence 77899999999999999976 5789999988 5666
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=4.5e-14 Score=154.70 Aligned_cols=383 Identities=13% Similarity=0.065 Sum_probs=187.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 003295 363 LIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQM---DNAENALEEMLSRGLSINQGAYTSVIKWLCI 439 (833)
Q Consensus 363 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~---~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~ 439 (833)
+...+.+.|++++|.++|++..+.| +...+..|...|...|+. ++|.+.|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4455566666677776666666544 233344455555555555 6666666665533 34444444443333
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---HHH
Q 003295 440 NSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNL---KEA 516 (833)
Q Consensus 440 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A 516 (833)
.+.. ..++.++|...+++..+.|.. ..+..|...|...+.. .++
T Consensus 82 ~~~~------------------------------~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a 128 (452)
T 3e4b_A 82 KPGA------------------------------TEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNA 128 (452)
T ss_dssp C--C------------------------------CHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCH
T ss_pred CCCC------------------------------CCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHH
Confidence 3300 001344444444444443322 1344444444443332 223
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHH
Q 003295 517 GKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLG---KMEEAIELWEEC 593 (833)
Q Consensus 517 ~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~ 593 (833)
.+.+....+.| +...+..|...|...+.++++......+.+.-...++..+..+...|...| +.++|++.|++.
T Consensus 129 ~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~a 205 (452)
T 3e4b_A 129 QQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAG 205 (452)
T ss_dssp HHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 33444444333 233444555555555544444433222222211223335666666666666 666777777766
Q ss_pred hhCCCCCCHhhHHHHHHHHHcc----CCHHHHHHHHHHHHHCCCccCHHHHHHHHHH-H--HHcCChHHHHHHHHHHHhC
Q 003295 594 KRTVFGPDIYTYGVMIDGFCKA----DKIEEGETLFNEMISKKMELNPVVYNTLIRA-Y--CKIGNTTAAFRLSNDMKSR 666 (833)
Q Consensus 594 ~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~ 666 (833)
.+.| .++...+..+...|... +++++|+..|++.. . -++..+..+... + ...|++++|++.|++..+.
T Consensus 206 a~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~ 280 (452)
T 3e4b_A 206 VSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA 280 (452)
T ss_dssp HHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT
T ss_pred HHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC
Confidence 6665 23444334455555443 56777777777765 2 245555555555 3 3466777777777777766
Q ss_pred CCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHHhCC
Q 003295 667 GILPTSVTYSSLIHGLCNIG-----LIEDAKCLFDEMRKEGLLPNVACYTALIGGYCK----LGQMDEAESVLQEMASIN 737 (833)
Q Consensus 667 ~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 737 (833)
| +...+..|...|. .| ++++|..+|++.. .| +...+..|...|.. ..+.++|...|++..+.|
T Consensus 281 g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 281 D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 5 5555666666555 44 7777777777666 32 45555666666554 237777777777777655
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 738 IHPNKITYTIMIGGYCK----LGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 738 ~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
+......|...|.. ..+.++|..++++..+.|. ++.......+......++.++|..+.++-.+
T Consensus 353 ---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 353 ---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp ---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 23344455555543 4577777777777777652 2222222222222233455566666655443
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=8.2e-14 Score=140.32 Aligned_cols=223 Identities=14% Similarity=0.060 Sum_probs=150.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc--C----HHHHHH
Q 003295 569 TYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMEL--N----PVVYNT 642 (833)
Q Consensus 569 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~~~ 642 (833)
.+..+...+...|++++|...|+++.+.. .+...+..+...|...|++++|...+++..+..+.. + ..+|..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44455555555555555555555555544 445555555555666666666666665555432211 1 456666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC
Q 003295 643 LIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQ 722 (833)
Q Consensus 643 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 722 (833)
+...+...|++++|.+.+++..+.. |+. ..+...|++++|...++++.... +.+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 7777777777777777777776642 332 33555677788888888877742 2245667777788888888
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003295 723 MDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDR 802 (833)
Q Consensus 723 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 802 (833)
+++|...++++.+.. +.+..+|..++.+|...|++++|++.++++++.. +.+..+|..++..+...|++++|.+.+++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 888888888887753 4567778888888888888888888888888753 33567788888888888888888888888
Q ss_pred HHH
Q 003295 803 MLS 805 (833)
Q Consensus 803 m~~ 805 (833)
.++
T Consensus 233 a~~ 235 (258)
T 3uq3_A 233 ART 235 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.62 E-value=1.3e-13 Score=151.18 Aligned_cols=109 Identities=12% Similarity=-0.046 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-----C
Q 003295 476 GKQAEATELCFRLFEKGFTVNTVTSNALIHG-M--CEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDG-----K 547 (833)
Q Consensus 476 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~-~--~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g-----~ 547 (833)
++.++|...|++.. +-+...+..|... + ...++.++|...|++..+.| +...+..|...|. .| +
T Consensus 231 ~d~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 231 PDEKTAQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp CCHHHHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCC
T ss_pred CCHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCC
Confidence 34555555555544 1233444444444 2 23455555555555555444 3444444444444 22 4
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhC
Q 003295 548 PEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCS----LGKMEEAIELWEECKRT 596 (833)
Q Consensus 548 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~ 596 (833)
.++|.++|++.. .| +...+..+...|.. ..++++|..+|+...+.
T Consensus 303 ~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 303 AKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp HHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 555555555444 21 33444444444433 22445555555544443
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.7e-13 Score=137.95 Aligned_cols=223 Identities=11% Similarity=0.027 Sum_probs=136.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CC----HhhHHH
Q 003295 534 TYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFG--PD----IYTYGV 607 (833)
Q Consensus 534 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~~ 607 (833)
.|..+...+...|++++|...++++++.. .+...+..+..++...|++++|...++++.+.... ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444444444455555555554444443 34444444555555555555555555544432100 11 344555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003295 608 MIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGL 687 (833)
Q Consensus 608 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 687 (833)
+...|.+.|++++|...|+++.+... + ...+.+.|++++|.+.++++.... +.+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~--~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHR--T-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC--C-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCc--h-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 55556666666666666666555422 2 123455566777777777766653 2245566677777777788
Q ss_pred HHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003295 688 IEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNV 767 (833)
Q Consensus 688 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 767 (833)
+++|...++++.+.. +.+..+|..+...+.+.|++++|...++++.+.. +.+...|..++.++...|++++|.+.+++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 888888887777653 3456777777888888888888888888877653 44577788888888888888888888888
Q ss_pred HHH
Q 003295 768 MAE 770 (833)
Q Consensus 768 m~~ 770 (833)
+.+
T Consensus 233 a~~ 235 (258)
T 3uq3_A 233 ART 235 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.59 E-value=1.2e-13 Score=135.12 Aligned_cols=199 Identities=16% Similarity=0.140 Sum_probs=142.8
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003295 600 PDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLI 679 (833)
Q Consensus 600 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 679 (833)
++...+..+...+.+.|++++|...|++.++..+. +...+..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45556666667777777777777777777766554 66777777777777777777777777777654 33556677777
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 003295 680 HGLCNI-----------GLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIM 748 (833)
Q Consensus 680 ~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 748 (833)
..+... |++++|+..+++.++.. +-+...+..+...+...|++++|+..|+++.+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 777777 99999999999998853 3356788888899999999999999999998876 678889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003295 749 IGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRML 804 (833)
Q Consensus 749 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 804 (833)
..+|...|++++|+..++++++.. +.+...+..++..+...|++++|+..+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999998852 3367888899999999999999998887653
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.59 E-value=6.2e-14 Score=137.10 Aligned_cols=198 Identities=13% Similarity=-0.004 Sum_probs=137.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 003295 216 PSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIH 295 (833)
Q Consensus 216 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 295 (833)
++...+..+...+.+.|++++|...|++.+.-.|.+...+..+..++.+.|++++|...|++..+..+. +...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 355677777888888888888888888888666777888888888888888888888888888876432 5667777888
Q ss_pred HHHhc-----------CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHH
Q 003295 296 GLCRN-----------GRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLI 364 (833)
Q Consensus 296 ~~~~~-----------g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li 364 (833)
.+.+. |++++|+..+++..+.. +.+...|..+...+...|++++|+..|++..+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 88777 88888888887777653 3355667777777777888888888888777765 4677777777
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 003295 365 DGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEM 418 (833)
Q Consensus 365 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~ 418 (833)
..|...|++++|+..|++..+..+. +...+..+...+.+.|++++|.+.+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777788888888888777765322 5566777777777777777777777654
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=1.2e-13 Score=140.77 Aligned_cols=247 Identities=12% Similarity=-0.068 Sum_probs=191.1
Q ss_pred hccCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHH
Q 003295 195 KNLGFGYAIDVFSIFSSKGIF---PSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDA 271 (833)
Q Consensus 195 ~~~~~~~A~~~f~~~~~~~~~---p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 271 (833)
..|++++|++.|+.+.+.... .+..+|..+...+...|++++|...|+++..-.+.+..+|..+..+|...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 356788999999998876432 24678889999999999999999999999955567889999999999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003295 272 IGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVR 351 (833)
Q Consensus 272 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 351 (833)
.+.|+++.+... .+..++..++..|.+.|++++|...|+++.+. .|+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999999998743 26788999999999999999999999999875 455555555566667789999999999888765
Q ss_pred CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC---ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcc
Q 003295 352 GFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSP---NSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQG 428 (833)
Q Consensus 352 g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~ 428 (833)
. .++...+ .++..+...++.++|.+.+++........ +..++..+...|.+.|++++|...|+++.+.. | .
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p--~ 247 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--V--H 247 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C--T
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--c--h
Confidence 3 2233343 47777888889999999999887653211 14678888889999999999999999988753 2 2
Q ss_pred cHHHHHHHHHhcCChhHHHHHH
Q 003295 429 AYTSVIKWLCINSRFNSALHFT 450 (833)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~ 450 (833)
.+......+...|++++|++.+
T Consensus 248 ~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 NFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TCHHHHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHHHhhHHHH
Confidence 2334455566667776666554
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.56 E-value=6.2e-12 Score=127.92 Aligned_cols=224 Identities=11% Similarity=-0.018 Sum_probs=160.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCccCHHHHH
Q 003295 566 DNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCK----ADKIEEGETLFNEMISKKMELNPVVYN 641 (833)
Q Consensus 566 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 641 (833)
+..++..+...+...|++++|.+.|++..+. .+...+..+...|.. .+++++|...|++..+.+ ++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4455556666666666666676666666652 244555666666666 777777777777776664 566677
Q ss_pred HHHHHHHH----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhHHHHH
Q 003295 642 TLIRAYCK----IGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCN----IGLIEDAKCLFDEMRKEGLLPNVACYTAL 713 (833)
Q Consensus 642 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 713 (833)
.+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 777777777777777664 56667777777777 778888888888877754 45566667
Q ss_pred HHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003295 714 IGGYCK----LGQMDEAESVLQEMASINIHPNKITYTIMIGGYCK----LGDMKEAAKLLNVMAEKGISPDSITYNVFMD 785 (833)
Q Consensus 714 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 785 (833)
...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|++.+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777776 778888888888887753 46677778888888 888888888888888754 2667777888
Q ss_pred HHhc----CCCHHHHHHHHHHHHHCC
Q 003295 786 GHCK----GGNVEEAFKVCDRMLSEG 807 (833)
Q Consensus 786 ~~~~----~g~~~~A~~~~~~m~~~g 807 (833)
.|.. .+++++|.+++++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8877 788888888888888743
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=1.2e-12 Score=131.45 Aligned_cols=199 Identities=10% Similarity=-0.000 Sum_probs=113.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003295 603 YTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGL 682 (833)
Q Consensus 603 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 682 (833)
..+..+...+...|++++|...|+++.+..+. +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 33444455555555555555555555544322 45555555555666666666666666555543 22445555556666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003295 683 CNIGLIEDAKCLFDEMRKEGLLP-NVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEA 761 (833)
Q Consensus 683 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 761 (833)
...|++++|.++++++.+.+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666665522223 34455556666666666666666666666542 33455666666666666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 762 AKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 762 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
...++++.+.. +.+...+..++..+...|++++|.++++++.+
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 66666666532 23455566666666666666666666666665
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.54 E-value=1.2e-12 Score=138.87 Aligned_cols=247 Identities=12% Similarity=0.073 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCC-HHHHHHHHHHHHHCCCccCHHHHHHHHHH
Q 003295 568 YTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADK-IEEGETLFNEMISKKMELNPVVYNTLIRA 646 (833)
Q Consensus 568 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 646 (833)
..|..+...+.+.|++++|+..++++++.. +.+...|+.+..++.+.|+ +++|+..|+++++..+. +...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 345555555566666666666666665542 2235556666666666664 66666666666665544 56666666666
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh-cCChhH
Q 003295 647 YCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCK-LGQMDE 725 (833)
Q Consensus 647 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~ 725 (833)
+.+.|++++|+..|+++++.. +-+...|..+..++.+.|++++|+..++++++.. +-+...|+.+..++.+ .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 666677777777776666654 3355666666666667777777777777776642 2345666666666666 444466
Q ss_pred H-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC-------
Q 003295 726 A-----ESVLQEMASINIHPNKITYTIMIGGYCKLG--DMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGG------- 791 (833)
Q Consensus 726 A-----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g------- 791 (833)
| +..+++.++.. +-+...|..+...+...| ++++|++.+.++ +. -+.+...+..++..|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccch
Confidence 6 36666666543 345566766776666666 466777776666 32 2234566666777776653
Q ss_pred --CHHHHHHHHHHH-HHCCCCCC-HHHHHHHHHhhc
Q 003295 792 --NVEEAFKVCDRM-LSEGLSLD-EITYTTLIDGWQ 823 (833)
Q Consensus 792 --~~~~A~~~~~~m-~~~g~~p~-~~~~~~l~~~~~ 823 (833)
..++|+++++++ .+ +.|+ ...|..+...+.
T Consensus 331 ~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 331 EDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHH
Confidence 246777777776 44 4454 455555544443
No 47
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.54 E-value=1.5e-10 Score=130.97 Aligned_cols=458 Identities=11% Similarity=0.016 Sum_probs=228.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHH
Q 003295 200 GYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGR---IEDAIGLFT 276 (833)
Q Consensus 200 ~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~ 276 (833)
.+.+..|+..+..++. |..+|..++..+.+.+.++.+..+|+.++.-+|.....|...+..-.+.|. ++.+..+|+
T Consensus 49 ~d~i~~lE~~l~~np~-d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQPT-DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp SCHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 4555666666666654 788888888888888888888888888886677777788888877777777 888888888
Q ss_pred HHHHcCC-CCChhhHHHHHHHHHhcCCh----hH----HHHHHHHHHh-CCC-CCC-hhhHHHHHHHHHh---------c
Q 003295 277 KMEELGI-APNVVTYNNIIHGLCRNGRL----YE----AFHLKEKMVL-REV-EPS-LITYSILINGLIK---------L 335 (833)
Q Consensus 277 ~m~~~g~-~p~~~~~~~li~~~~~~g~~----~~----A~~~~~~m~~-~~~-~p~-~~t~~~li~~~~~---------~ 335 (833)
+...... .|++..|...+....+.++. ++ ..++|+.+.. .|. .++ ...|...+..... .
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 8876531 26777777777665555543 22 3366666553 244 333 3556666654332 2
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHH
Q 003295 336 EKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENAL 415 (833)
Q Consensus 336 g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l 415 (833)
++++.+..+|+.++......-..+|..... +.+.-+...+.+++.+ ...+++.|...+
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e---------------------~~~~y~~Ar~~~ 265 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQ-WEQDVNQLTARRHIGE---------------------LSAQYMNARSLY 265 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHH---------------------HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHH-HHHhcCcchHHHHHHH---------------------hhHHHHHHHHHH
Confidence 334556666666553211000111111110 0000000001111110 011233344444
Q ss_pred HHHHHC--CCC---CCc-cc--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-------CHHH
Q 003295 416 EEMLSR--GLS---INQ-GA--YTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNG-------KQAE 480 (833)
Q Consensus 416 ~~~~~~--g~~---~~~-~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~ 480 (833)
.++... ++. |.. .+ ...+ ... .......+.++.. .+..--..+ ..+.
T Consensus 266 ~e~~~~~~~l~r~~p~~~~~~~~~~~-p~~--~~~~~~ql~lW~~---------------yi~fEk~~~~~l~~~~~~~R 327 (679)
T 4e6h_A 266 QDWLNITKGLKRNLPITLNQATESNL-PKP--NEYDVQQLLIWLE---------------WIRWESDNKLELSDDLHKAR 327 (679)
T ss_dssp HHHHHHTTTCCCCCCSSSTTCCTTTS-CCT--TCCCHHHHHHHHH---------------HHHHHHTCTTCCCHHHHHHH
T ss_pred HHHHHHHHhHhhccccccccchhccC-CCC--chhHHHHHHHHHH---------------HHHHHHhCCccccchhhHHH
Confidence 433221 110 000 00 0000 000 0000011111111 111111111 1223
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 003295 481 ATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAG-KLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMI 559 (833)
Q Consensus 481 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 559 (833)
+..+|++.+.. ++.+...|...+..+...|+.++|. .+|++..... +.+...|...+...-+.|++++|.++|+.++
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44455555554 3335666666666666666666665 7777666542 2245555556666666677777777777666
Q ss_pred HCCC---------CCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHcc-CC
Q 003295 560 KRGI---------QPD------------NYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKA-DK 617 (833)
Q Consensus 560 ~~g~---------~p~------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~ 617 (833)
+... .|+ ...|...+....+.|+.+.|..+|..+.+.-.......|...+..-.+. ++
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence 5310 121 2245555555555666666666666665541011122232222222232 33
Q ss_pred HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 003295 618 IEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILP--TSVTYSSLIHGLCNIGLIEDAKCLF 695 (833)
Q Consensus 618 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~ 695 (833)
.+.|.++|+..++.-+. +...|...+......|+.+.|..+|++.......+ ....|...+..-.+.|+.+.+.++.
T Consensus 486 ~e~Ar~ife~~Lk~~p~-~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 486 TKTACKVLELGLKYFAT-DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666655222 45555566666666666666666666666543211 2234555555555666666666666
Q ss_pred HHHHHC
Q 003295 696 DEMRKE 701 (833)
Q Consensus 696 ~~m~~~ 701 (833)
+++.+.
T Consensus 565 ~R~~~~ 570 (679)
T 4e6h_A 565 KRFFEK 570 (679)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666654
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.54 E-value=8.6e-13 Score=134.14 Aligned_cols=228 Identities=12% Similarity=0.035 Sum_probs=97.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCcc--CHHHHHHHHHHHHHcC
Q 003295 574 LHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMEL--NPVVYNTLIRAYCKIG 651 (833)
Q Consensus 574 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g 651 (833)
...+...|++++|+..|+++.+.. +.+...+..+...|...|++++|+..+++..+....+ ....|..+...+...|
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 333444444444444444444332 1122234444444444444444444444444421111 1222444444444444
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHH
Q 003295 652 NTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQ 731 (833)
Q Consensus 652 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 731 (833)
++++|++.+++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...|..+...+...+++++|.+.++
T Consensus 89 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444432 1233444444445555555555555555444431 2233334444412222335555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHhcCCCHHHHHHHHH
Q 003295 732 EMASINIHPNKITYTIMIGGYCKLGD---MKEAAKLLNVMAEKG-ISPD------SITYNVFMDGHCKGGNVEEAFKVCD 801 (833)
Q Consensus 732 ~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~ 801 (833)
++.+.. +.+...+..+..++...|+ +++|...++++.+.. -.|+ ..+|..++..|...|++++|.+.++
T Consensus 167 ~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (272)
T 3u4t_A 167 KVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245 (272)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 554432 2234444444444444444 444555555444320 0111 1344455555555555555555555
Q ss_pred HHHH
Q 003295 802 RMLS 805 (833)
Q Consensus 802 ~m~~ 805 (833)
++++
T Consensus 246 ~al~ 249 (272)
T 3u4t_A 246 NILA 249 (272)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5555
No 49
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.54 E-value=8.4e-11 Score=132.94 Aligned_cols=436 Identities=11% Similarity=0.049 Sum_probs=258.0
Q ss_pred hhhHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHhhcCC--CCCHHH
Q 003295 180 VQIADLLVHVYCTQFKNLGFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANE---VQKGIEVFETMCRGV--SPDVFL 254 (833)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~--~~~~~~ 254 (833)
...+..+++... +.+.+..+..+|+++...-+ .+...|..-+..-.+.|. ++.+..+|++.+... +|++..
T Consensus 66 ~~~W~~yi~~~~---~~~~~~~aR~vyEraL~~fP-~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 66 IFLYVKLLKHHV---SLKQWKQVYETFDKLHDRFP-LMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred HHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 344555565543 46789999999999987643 378889999999889998 999999999999655 489999
Q ss_pred HHHHHHHHHhcCCh----hH----HHHHHHHHHH-cCC-CCC-hhhHHHHHHHHHh---------cCChhHHHHHHHHHH
Q 003295 255 FSTAINAFCKRGRI----ED----AIGLFTKMEE-LGI-APN-VVTYNNIIHGLCR---------NGRLYEAFHLKEKMV 314 (833)
Q Consensus 255 ~~~li~~~~~~g~~----~~----A~~~~~~m~~-~g~-~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~ 314 (833)
|...+.-..+.++. ++ ..++|+.... .|. .++ ...|...+..... .++++.++.+|++++
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 99988877776654 33 4578887654 465 554 4678888876542 346788999999988
Q ss_pred hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHh--CCCC---
Q 003295 315 LREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVS--KGMS--- 389 (833)
Q Consensus 315 ~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~--~g~~--- 389 (833)
......-..+|......--..+. ..+..++.+ ...+++.|...+.++.. .++.
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e---------------------~~~~y~~Ar~~~~e~~~~~~~l~r~~ 279 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE---------------------LSAQYMNARSLYQDWLNITKGLKRNL 279 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred hCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH---------------------hhHHHHHHHHHHHHHHHHHHhHhhcc
Confidence 53111112233222211111011 111222111 11234445555544321 1111
Q ss_pred CC--------------------hhHHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC
Q 003295 390 PN--------------------SVTFNSLIHGFCKSG-------QMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSR 442 (833)
Q Consensus 390 p~--------------------~~~~~~li~~~~~~g-------~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~ 442 (833)
|. ...|...+..--..+ ..+.+..+|++++.. .+-+.
T Consensus 280 p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~--------------- 343 (679)
T 4e6h_A 280 PITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAP--------------- 343 (679)
T ss_dssp CSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCH---------------
T ss_pred ccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCH---------------
Confidence 10 112333332211111 011223344444433 22233
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003295 443 FNSALHFTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEAT-ELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLM 521 (833)
Q Consensus 443 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~ 521 (833)
..+...+..+...|+.++|. +++++.+.. ++.+...|-..+...-+.|++++|.++|+
T Consensus 344 --------------------~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iye 402 (679)
T 4e6h_A 344 --------------------EIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTIL 402 (679)
T ss_dssp --------------------HHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34444444444455555554 555555543 33345555555555556666666666666
Q ss_pred HHhhCCC---------CC------------CHHHHHHHHHHHHhcCChhhHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh
Q 003295 522 EMLQRGL---------IL------------DKVTYNTLILGCCKDGKPEEGFKLKEDMIKR-GIQPDNYTYNLLLHGLCS 579 (833)
Q Consensus 522 ~m~~~g~---------~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~ 579 (833)
++.+... .| ....|...+....+.|+.+.|..+|..+++. +.. ....|...+..-.+
T Consensus 403 k~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-~~~lyi~~A~lE~~ 481 (679)
T 4e6h_A 403 SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-TPDIYLENAYIEYH 481 (679)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-CTHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHH
Confidence 6554210 01 2335777777777888889999999988876 211 22233332222333
Q ss_pred c-CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCc--cCHHHHHHHHHHHHHcCChHHH
Q 003295 580 L-GKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKME--LNPVVYNTLIRAYCKIGNTTAA 656 (833)
Q Consensus 580 ~-g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A 656 (833)
. ++.+.|..+|+...+. ++.+...+...++.....|+.+.|..+|+..+..... -....|...+..-.+.|+.+.+
T Consensus 482 ~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~ 560 (679)
T 4e6h_A 482 ISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV 560 (679)
T ss_dssp TTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred hCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 3 4588999999988876 4456667778888888889999999999998877542 2456888888888899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003295 657 FRLSNDMKSRGILPTSVTYSSLIHGL 682 (833)
Q Consensus 657 ~~~~~~m~~~~~~p~~~~~~~li~~~ 682 (833)
.++.+++.+.- |+......+++-|
T Consensus 561 ~~v~~R~~~~~--P~~~~~~~f~~ry 584 (679)
T 4e6h_A 561 RTLEKRFFEKF--PEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHS--TTCCHHHHHHHHT
T ss_pred HHHHHHHHHhC--CCCcHHHHHHHHh
Confidence 99999998873 4433344444333
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.54 E-value=7.3e-12 Score=127.39 Aligned_cols=223 Identities=11% Similarity=-0.027 Sum_probs=126.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCChhhHHH
Q 003295 217 SLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCK----RGRIEDAIGLFTKMEELGIAPNVVTYNN 292 (833)
Q Consensus 217 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 292 (833)
+..++..+...+.+.|++++|...|++... +.+..++..+...|.. .|++++|...|++..+.+ +...+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 344555555556666666666666666553 2334555556666666 666666666666666543 4555556
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCChhhHHHHH
Q 003295 293 IIHGLCR----NGRLYEAFHLKEKMVLREVEPSLITYSILINGLIK----LEKFDDANFVLKEMSVRGFVPNYVVYNTLI 364 (833)
Q Consensus 293 li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~y~~li 364 (833)
+...|.. .|++++|++.|++..+.+ +..++..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 6666666 666666666666666543 45555556666655 666666666666665543 344555555
Q ss_pred HHHHH----cCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 003295 365 DGYCK----KGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCK----SGQMDNAENALEEMLSRGLSINQGAYTSVIKW 436 (833)
Q Consensus 365 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~ 436 (833)
..|.. .+++++|...|++..+.+ +...+..+...|.+ .+++++|.+.|++..+.+ +...+..+...
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 55555 566666666666655542 34455555555655 666666666666655543 23444444555
Q ss_pred HHh----cCChhHHHHHHHHHHHC
Q 003295 437 LCI----NSRFNSALHFTKEMLLR 456 (833)
Q Consensus 437 ~~~----~g~~~~A~~~~~~~~~~ 456 (833)
|.. .+++++|.+.++...+.
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHHc
Confidence 554 45555555555544443
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=2.5e-12 Score=126.34 Aligned_cols=207 Identities=10% Similarity=0.009 Sum_probs=129.6
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003295 602 IYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHG 681 (833)
Q Consensus 602 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 681 (833)
...+..+...+...|++++|.+.++++.+..+. +...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 444555555666666666666666666554332 45566666666666666666666666666543 3355566666666
Q ss_pred HHhc-CCHHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 003295 682 LCNI-GLIEDAKCLFDEMRKEGLLP-NVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMK 759 (833)
Q Consensus 682 ~~~~-g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 759 (833)
+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..++..+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 6677 77777777777766622223 24556666677777777777777777776643 344666777777777777777
Q ss_pred HHHHHHHHHHHcCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHH
Q 003295 760 EAAKLLNVMAEKGIS-PDSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSLDEIT 814 (833)
Q Consensus 760 ~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 814 (833)
+|.+.++++.+.. + .+...+..+...+...|+.++|..+++.+.+ ..|+...
T Consensus 165 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~ 217 (225)
T 2vq2_A 165 DADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYSEE 217 (225)
T ss_dssp HHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHH
Confidence 7777777776642 2 3555666666666777777777777777665 2455333
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.52 E-value=1.6e-12 Score=137.74 Aligned_cols=147 Identities=7% Similarity=-0.017 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-hhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003295 499 TSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGK-PEEGFKLKEDMIKRGIQPDNYTYNLLLHGL 577 (833)
Q Consensus 499 ~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 577 (833)
.|+.+...+.+.|++++|+..++++++..+. +...|+.+...+...|+ +++|+..++++++.... +...|..+..++
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 4444444455555555555555555544433 44444545555555553 55555555554444322 344444444444
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHH
Q 003295 578 CSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCK 649 (833)
Q Consensus 578 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 649 (833)
...|++++|+..|+++++.. +.+...|..+..++.+.|++++|+..++++++..+. +...|+.+..++.+
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISN 246 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 44444444444444444332 122333333444444444444444444444433322 33334444333333
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.52 E-value=5.1e-13 Score=136.00 Aligned_cols=246 Identities=11% Similarity=-0.081 Sum_probs=150.1
Q ss_pred cCChhhHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHH
Q 003295 545 DGKPEEGFKLKEDMIKRGIQ---PDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEG 621 (833)
Q Consensus 545 ~g~~~~A~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 621 (833)
.|++++|+..++++++.... .+..++..+...+...|++++|...|+++.+.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 34555666666665554221 123455556666666666666666666665543 23455666666666666777777
Q ss_pred HHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003295 622 ETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKE 701 (833)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 701 (833)
...|+++++..+. +...+..+...|.+.|++++|.+.++++.+.. |+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 7776666665433 55667777777777777777777777776652 33333334444456667888888888777665
Q ss_pred CCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003295 702 GLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIH---PNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSI 778 (833)
Q Consensus 702 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 778 (833)
. +++...+. ++..+...++.++|...++++.+.... .+...|..++..|...|++++|...++++++. .|+.
T Consensus 174 ~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~- 248 (275)
T 1xnf_A 174 S-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN- 248 (275)
T ss_dssp S-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT-
T ss_pred C-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh-
Confidence 2 33433333 566666777777888888777653210 01467778888888888888888888888874 4532
Q ss_pred HHHHHHHHHhcCCCHHHHHHHH
Q 003295 779 TYNVFMDGHCKGGNVEEAFKVC 800 (833)
Q Consensus 779 ~~~~l~~~~~~~g~~~~A~~~~ 800 (833)
+.....++...|++++|++.+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 222345666777777777665
No 54
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.52 E-value=2.2e-12 Score=131.17 Aligned_cols=244 Identities=10% Similarity=-0.011 Sum_probs=136.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HhhHHHHHHHHHcc
Q 003295 538 LILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPD--IYTYGVMIDGFCKA 615 (833)
Q Consensus 538 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~ 615 (833)
....+...|++++|+..++++++.... +...+..+...+...|++++|...++++.+....++ ...|..+...|...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 344444555555555555555544222 333444555555555555555555555554221111 22255555566666
Q ss_pred CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003295 616 DKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLF 695 (833)
Q Consensus 616 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 695 (833)
|++++|++.|++..+..+. +..+|..+...|...|++++|.+.+++..+.. +.+...+..+...+...+++++|.+.|
T Consensus 88 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666554433 45566666666666777777777776666552 334555555552333445777777777
Q ss_pred HHHHHCCCCCChhHHHHHHHHHHhcCC---hhHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHhcCCHHHHHHHH
Q 003295 696 DEMRKEGLLPNVACYTALIGGYCKLGQ---MDEAESVLQEMASIN-IHPN------KITYTIMIGGYCKLGDMKEAAKLL 765 (833)
Q Consensus 696 ~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~li~~~~~~g~~~~A~~~~ 765 (833)
+++.+.. +.+...+..+...+...|+ .++|...++++.+.. -.|+ ..+|..+...|...|++++|.+.+
T Consensus 166 ~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 166 VKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777642 2235566666666666666 666777777666421 0122 246667777777778888888888
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHH
Q 003295 766 NVMAEKGISP-DSITYNVFMDGH 787 (833)
Q Consensus 766 ~~m~~~g~~p-~~~~~~~l~~~~ 787 (833)
+++++. .| +...+..+....
T Consensus 245 ~~al~~--~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 245 KNILAL--DPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHH--CTTCHHHHHHHC---
T ss_pred HHHHhc--CccHHHHHHHhhhhh
Confidence 877774 34 455555554443
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=3.9e-12 Score=127.60 Aligned_cols=198 Identities=13% Similarity=0.010 Sum_probs=120.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHH
Q 003295 570 YNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCK 649 (833)
Q Consensus 570 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 649 (833)
+..+...+...|++++|.+.|+++.+.. +.+...+..+...|...|++++|.+.++++.+..+. +...+..+...+..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHH
Confidence 3334444444444444444444444332 223444445555555555555555555555544332 45556666666666
Q ss_pred cCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHH
Q 003295 650 IGNTTAAFRLSNDMKSRGILP-TSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAES 728 (833)
Q Consensus 650 ~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 728 (833)
.|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666666522223 34556666677777777777777777777653 3346667777777777788888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003295 729 VLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEK 771 (833)
Q Consensus 729 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 771 (833)
.++++.+.. +.+...+..+...+...|++++|.++++++.+.
T Consensus 197 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 197 YYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 887777653 456667777777777888888888888887774
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.51 E-value=1.3e-12 Score=130.10 Aligned_cols=198 Identities=15% Similarity=0.134 Sum_probs=110.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003295 603 YTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGL 682 (833)
Q Consensus 603 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 682 (833)
..|..+...+...|++++|...|+++.+..+. +...+..+...+.+.|++++|.+.++++.+.. +.+...+..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 34444555555566666666666666554333 45556666666666666666666666665543 23455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003295 683 CNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAA 762 (833)
Q Consensus 683 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 762 (833)
...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..++..+...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666666542 3345556666666666666666666666666542 345566666666666666677776
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 763 KLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 763 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
+.++++.+.. +.+..++..++..|...|++++|.+.++++++
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 6666666642 23455666666666667777777777766666
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.51 E-value=7e-13 Score=132.15 Aligned_cols=201 Identities=15% Similarity=0.071 Sum_probs=135.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 003295 217 SLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHG 296 (833)
Q Consensus 217 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 296 (833)
...+|..+...+.+.|++++|...|+++....+.+..++..+...+.+.|++++|.+.|+++.+... .+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 4556667777777888888888888888765566777788888888888888888888888777643 256677777888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHH
Q 003295 297 LCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEA 376 (833)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A 376 (833)
|...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++.+... .+...+..+...|.+.|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888877653 34566777777788888888888888888776532 2566777777788888888888
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003295 377 LKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSR 421 (833)
Q Consensus 377 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~ 421 (833)
.+.++++.+... .+..++..+...+.+.|++++|.+.++++.+.
T Consensus 179 ~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 888888776532 25667777778888888888888888887765
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.49 E-value=8e-12 Score=122.62 Aligned_cols=201 Identities=10% Similarity=0.025 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHH
Q 003295 567 NYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRA 646 (833)
Q Consensus 567 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 646 (833)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.++++.+..+. +..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Confidence 3445555555666666666666666655542 223555556666666666666666666666655433 55666666777
Q ss_pred HHHc-CChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChh
Q 003295 647 YCKI-GNTTAAFRLSNDMKSRGILP-TSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMD 724 (833)
Q Consensus 647 ~~~~-g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 724 (833)
+... |++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 7777 77777777777766622222 24566667777777777777777777777652 334667777777777888888
Q ss_pred HHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003295 725 EAESVLQEMASINIH-PNKITYTIMIGGYCKLGDMKEAAKLLNVMAEK 771 (833)
Q Consensus 725 ~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 771 (833)
+|...++++.+.. + .+...+..+...+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 8888888777643 3 46666777777777788888888887777663
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.46 E-value=1.2e-12 Score=142.28 Aligned_cols=278 Identities=15% Similarity=0.097 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCChhhHHHHHHHHHHCC----C-CCCHH
Q 003295 498 VTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDK----VTYNTLILGCCKDGKPEEGFKLKEDMIKRG----I-QPDNY 568 (833)
Q Consensus 498 ~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~-~p~~~ 568 (833)
..+..+...+...|++++|...|+++.+.+.. +. ..|..+...+...|++++|...+++.++.. . .....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34445555666666777777776666665433 22 345556666666666666666666654420 0 11223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHH
Q 003295 569 TYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYC 648 (833)
Q Consensus 569 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 648 (833)
.+..+...+...|++++|...++++.+.... . ........++..+...|.
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----------------------------~--~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQ----------------------------L--GDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------------------H--TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----------------------------h--hchHHHHHHHHHHHHHHH
Confidence 4444455555555555555555544331000 0 000112334555555566
Q ss_pred HcCC-----------------hHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC
Q 003295 649 KIGN-----------------TTAAFRLSNDMKSR----GI-LPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGL-LP 705 (833)
Q Consensus 649 ~~g~-----------------~~~A~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p 705 (833)
..|+ +++|++.+++..+. +. .....++..+...+...|++++|...+++..+..- .+
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 6666 66666665554331 11 11234667777888888888888888888776310 01
Q ss_pred C----hhHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C
Q 003295 706 N----VACYTALIGGYCKLGQMDEAESVLQEMASIN--IH---PNKITYTIMIGGYCKLGDMKEAAKLLNVMAEK----G 772 (833)
Q Consensus 706 ~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g 772 (833)
+ ..++..+...|...|++++|...+++..+.. .. ....++..+...|...|++++|.+.++++++. +
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 2367788888999999999999998877521 00 11457888899999999999999999988763 1
Q ss_pred CCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Q 003295 773 ISP-DSITYNVFMDGHCKGGNVEEAFKVCDRMLSE 806 (833)
Q Consensus 773 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 806 (833)
..+ ...++..++..|...|++++|.+.+++.++.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 111 1357888999999999999999999998873
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.43 E-value=3.8e-12 Score=138.18 Aligned_cols=278 Identities=14% Similarity=0.071 Sum_probs=188.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhC----C-CCCCHH
Q 003295 463 GLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNT----VTSNALIHGMCEAGNLKEAGKLLMEMLQR----G-LILDKV 533 (833)
Q Consensus 463 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~l~~m~~~----g-~~~~~~ 533 (833)
..+..+...+...|++++|...++++++.... +. .++..+...|...|++++|...+++..+. + ......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34456677889999999999999999987443 33 57889999999999999999999998754 1 122456
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 003295 534 TYNTLILGCCKDGKPEEGFKLKEDMIKRG-----IQPDNYTYNLLLHGLCSLGK-----------------MEEAIELWE 591 (833)
Q Consensus 534 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~-----------------~~~A~~~~~ 591 (833)
.+..+...+...|++++|...+++.++.. ......++..+...+...|+ +++|.+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 78888999999999999999999987641 11123456666777777777 555555555
Q ss_pred HHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-C
Q 003295 592 ECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGIL-P 670 (833)
Q Consensus 592 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p 670 (833)
+..+. .... ........++..+...|...|++++|.+.+++..+.... +
T Consensus 208 ~al~~----------------------------~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 208 ENLKL----------------------------MRDL--GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHH----------------------------HHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH----------------------------HHHc--CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 44321 1111 000112234555556666666666666666655442100 0
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CC---CChhHHHHHHHHHHhcCChhHHHHHHHHHHhC----C
Q 003295 671 T----SVTYSSLIHGLCNIGLIEDAKCLFDEMRKEG--LL---PNVACYTALIGGYCKLGQMDEAESVLQEMASI----N 737 (833)
Q Consensus 671 ~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g 737 (833)
+ ..++..+...+...|++++|...++++.+.. .. ....++..+...|...|++++|...+++..+. +
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 2356677777888888888888888776531 00 11456777888888888888888888887652 1
Q ss_pred CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003295 738 IH-PNKITYTIMIGGYCKLGDMKEAAKLLNVMAEK 771 (833)
Q Consensus 738 ~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 771 (833)
.. ....++..+...|...|++++|.++++++.+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 01 11347778888889999999999999988773
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.43 E-value=2.7e-12 Score=138.96 Aligned_cols=99 Identities=18% Similarity=0.132 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-Ch
Q 003295 217 SLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPD----VFLFSTAINAFCKRGRIEDAIGLFTKMEEL----GIAP-NV 287 (833)
Q Consensus 217 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~ 287 (833)
....+......+.+.|++++|...|+++..-.+.+ ..++..+...+...|++++|...|++.... +-.| ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 44455556666666666666666666666222222 245556666666666666666666665432 1111 13
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003295 288 VTYNNIIHGLCRNGRLYEAFHLKEKMVL 315 (833)
Q Consensus 288 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (833)
.++..+...|...|++++|...+++..+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 115 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLD 115 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555666666666666665554
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.43 E-value=6e-12 Score=136.15 Aligned_cols=278 Identities=15% Similarity=0.113 Sum_probs=144.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCChhhHHHHHHHHHHC----CCCC-C
Q 003295 496 NTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILD----KVTYNTLILGCCKDGKPEEGFKLKEDMIKR----GIQP-D 566 (833)
Q Consensus 496 ~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~ 566 (833)
....+......+...|++++|...|+++.+.+.. + ...+..+...+...|++++|...+++++.. +..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3445555566666666666666666666655332 2 234555555666666666666666655432 1111 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 003295 567 NYTYNLLLHGLCSLGKMEEAIELWEECKRTVFG-PDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIR 645 (833)
Q Consensus 567 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 645 (833)
..++..+...+...|++++|...+++..+.... ++ ......++..+..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------------------~~~~~~~~~~l~~ 135 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-------------------------------KVGEARALYNLGN 135 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-------------------------------ccchHHHHHHHHH
Confidence 233444445555555555555555554443110 00 0001234445555
Q ss_pred HHHHcCC--------------------hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 646 AYCKIGN--------------------TTAAFRLSNDMKSR----GILP-TSVTYSSLIHGLCNIGLIEDAKCLFDEMRK 700 (833)
Q Consensus 646 ~~~~~g~--------------------~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 700 (833)
.|...|+ +++|.+.+++.... +..+ ...++..+...+...|++++|...+++..+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555 55555555544321 1011 123455566666666666666666666654
Q ss_pred CC-CCCC----hhHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 701 EG-LLPN----VACYTALIGGYCKLGQMDEAESVLQEMASINI-HPN----KITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 701 ~g-~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
.. -.++ ..++..+...|...|++++|...+++..+..- .++ ..++..++..|...|++++|.+.++++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 20 0011 22556666666667777777766666553100 011 34566666667777777777777766654
Q ss_pred cCC-CCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 771 KGI-SPD----SITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 771 ~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
..- .++ ..++..++..|...|++++|.+.+++.++
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 210 111 34566666677777777777777666554
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.41 E-value=7.3e-11 Score=122.26 Aligned_cols=218 Identities=7% Similarity=-0.025 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCCh-------hHHHHHHHHhhcC-CCCCHHHHHHHHHHHHh
Q 003295 200 GYAIDVFSIFSSKGIFPSLKTCNFLLNSLVK-------ANEV-------QKGIEVFETMCRG-VSPDVFLFSTAINAFCK 264 (833)
Q Consensus 200 ~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~-------~g~~-------~~A~~~~~~~~~~-~~~~~~~~~~li~~~~~ 264 (833)
..|+.+|++.++..+. ++..|..++..+.. .|++ ++|..+|++.+.. .+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 5688888888776544 78888888887763 5886 8999999999963 55667799999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCC-hh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCChhHH
Q 003295 265 RGRIEDAIGLFTKMEELGIAPN-VV-TYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLI-KLEKFDDA 341 (833)
Q Consensus 265 ~g~~~~A~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~-~~g~~~~A 341 (833)
.|++++|.++|++..+. .|+ .. +|..++..+.+.|++++|+.+|++..+.. +++...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999985 444 33 79999999999999999999999998764 334444544333322 36999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCC--ChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 003295 342 NFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKG-MSP--NSVTFNSLIHGFCKSGQMDNAENALEEM 418 (833)
Q Consensus 342 ~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~g~~~~A~~~l~~~ 418 (833)
..+|++..+... -+...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.++|..+++++
T Consensus 189 ~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999887532 257788888999999999999999999998863 344 4567888888888999999999999998
Q ss_pred HHCC
Q 003295 419 LSRG 422 (833)
Q Consensus 419 ~~~g 422 (833)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8753
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.41 E-value=5.3e-12 Score=132.41 Aligned_cols=274 Identities=14% Similarity=0.091 Sum_probs=165.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003295 500 SNALIHGMCEAGNLKEAGKLLMEMLQRGLILD----KVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLH 575 (833)
Q Consensus 500 ~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 575 (833)
+......+...|++++|...|+++.+.... + ...+..+...+...|++++|...+++.++..
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------- 73 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA------------- 73 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-------------
Confidence 334445555556666666666555554322 2 2344445555555555555555555543320
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCc-----cCHHHHHHHHHHHHH
Q 003295 576 GLCSLGKMEEAIELWEECKRTVFG-PDIYTYGVMIDGFCKADKIEEGETLFNEMISKKME-----LNPVVYNTLIRAYCK 649 (833)
Q Consensus 576 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~li~~~~~ 649 (833)
...+.. ....++..+...|...|++++|...+++..+.... ....++..+...+..
T Consensus 74 ------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 74 ------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp ------------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ------------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 000000 11223444444455555555555555444332100 012355555566666
Q ss_pred cCC--------------------hHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 003295 650 IGN--------------------TTAAFRLSNDMKSR----GI-LPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKE--- 701 (833)
Q Consensus 650 ~g~--------------------~~~A~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 701 (833)
.|+ +++|.+.+++.... +. ......+..+...+...|++++|...++++.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 666 66666666554431 11 112345777778888889999999988887653
Q ss_pred -CCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 003295 702 -GLLP-NVACYTALIGGYCKLGQMDEAESVLQEMASINI-HPN----KITYTIMIGGYCKLGDMKEAAKLLNVMAEK--- 771 (833)
Q Consensus 702 -g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 771 (833)
+..+ ...++..+...+...|++++|...+++..+... .++ ..++..+...|...|++++|...++++.+.
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 1011 123778888889999999999999998774210 112 457888899999999999999999998763
Q ss_pred -CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 772 -GISP-DSITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 772 -g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
+-.+ ...++..++..|.+.|++++|.+.+++.++
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1111 135788899999999999999999999987
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.40 E-value=4.2e-11 Score=113.46 Aligned_cols=171 Identities=16% Similarity=0.082 Sum_probs=116.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 003295 636 NPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIG 715 (833)
Q Consensus 636 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 715 (833)
++.+|..+...|.+.|++++|++.|++..+.. +-+..++..+...+.+.|++++|...+.+..... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45666677777777777777777777766654 3356666777777777777777777777776642 334555666666
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHH
Q 003295 716 GYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEE 795 (833)
Q Consensus 716 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 795 (833)
.+...++++.|...+++..+.. +.+...+..++..|.+.|++++|++.++++++.. +.+..+|..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 6777777777777777776643 4456677777777777777777777777777742 2356677777777777777777
Q ss_pred HHHHHHHHHHCCCCCCH
Q 003295 796 AFKVCDRMLSEGLSLDE 812 (833)
Q Consensus 796 A~~~~~~m~~~g~~p~~ 812 (833)
|++.|++.++ +.|+.
T Consensus 160 A~~~~~~al~--~~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALE--KEEKK 174 (184)
T ss_dssp HHHHHHHHHH--TTHHH
T ss_pred HHHHHHHHHh--CCccC
Confidence 7777777776 45544
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.39 E-value=4.5e-11 Score=113.25 Aligned_cols=171 Identities=16% Similarity=0.070 Sum_probs=136.8
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003295 601 DIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIH 680 (833)
Q Consensus 601 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 680 (833)
+...|..+...|.+.|++++|++.|++.++..+. +..+|..+...|.+.|++++|...++...... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 5667777888888888888888888888877655 77788888888888888888888888887764 346667777778
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003295 681 GLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKE 760 (833)
Q Consensus 681 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 760 (833)
.+...++++.|...+.+..+.. +.+...+..+...|.+.|++++|++.|++..+.. +.+..+|..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 8888888888888888888753 3456778888888888999999999999888754 5567788889999999999999
Q ss_pred HHHHHHHHHHcCCCCCH
Q 003295 761 AAKLLNVMAEKGISPDS 777 (833)
Q Consensus 761 A~~~~~~m~~~g~~p~~ 777 (833)
|++.|+++++ +.|+.
T Consensus 160 A~~~~~~al~--~~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALE--KEEKK 174 (184)
T ss_dssp HHHHHHHHHH--TTHHH
T ss_pred HHHHHHHHHh--CCccC
Confidence 9999999888 44544
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.38 E-value=1.1e-11 Score=130.11 Aligned_cols=277 Identities=16% Similarity=0.078 Sum_probs=182.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-CCHHH
Q 003295 464 LLTLLVSGLCKNGKQAEATELCFRLFEKGFTVN----TVTSNALIHGMCEAGNLKEAGKLLMEMLQR----GLI-LDKVT 534 (833)
Q Consensus 464 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~l~~m~~~----g~~-~~~~~ 534 (833)
.+......+...|++++|...++++.+.... + ...+..+...+...|++++|...+++..+. +.. .....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3455677889999999999999999987433 3 467889999999999999999999987653 111 12455
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 003295 535 YNTLILGCCKDGKPEEGFKLKEDMIKRGIQ-PD----NYTYNLLLHGLCSLGK--------------------MEEAIEL 589 (833)
Q Consensus 535 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~--------------------~~~A~~~ 589 (833)
+..+...+...|++++|...+++.++.... ++ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 666777777788888888877776653111 11 2245555555555555 4444444
Q ss_pred HHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC---
Q 003295 590 WEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSR--- 666 (833)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 666 (833)
+++..+. .... .........+..+...+...|++++|.+.+++..+.
T Consensus 166 ~~~a~~~----------------------------~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 166 YEENLSL----------------------------VTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHHHHH----------------------------HHHH--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----------------------------HHhc--CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 4433221 0000 000112335566666677777777777777666542
Q ss_pred -CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhC---
Q 003295 667 -GI-LPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKE----GLLP-NVACYTALIGGYCKLGQMDEAESVLQEMASI--- 736 (833)
Q Consensus 667 -~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 736 (833)
+. .....++..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|...++++.+.
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 10 011236677777888888888888888887653 1011 1456777888888999999999998887652
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003295 737 -NIHP-NKITYTIMIGGYCKLGDMKEAAKLLNVMAEK 771 (833)
Q Consensus 737 -g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 771 (833)
+-.+ ...++..+...|.+.|++++|...++++.+.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1011 1347778889999999999999999998873
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.37 E-value=3.3e-10 Score=117.32 Aligned_cols=219 Identities=12% Similarity=0.066 Sum_probs=124.8
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHc
Q 003295 549 EEGFKLKEDMIKRGIQPDNYTYNLLLHGLC-------SLGKM-------EEAIELWEECKRTVFGPDIYTYGVMIDGFCK 614 (833)
Q Consensus 549 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 614 (833)
++|...|+++++..+ .+...|..++..+. +.|++ ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 455555666555422 24445555544443 23553 6666666666652112234456666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCccCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 003295 615 ADKIEEGETLFNEMISKKMELNPV-VYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLC-NIGLIEDAK 692 (833)
Q Consensus 615 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~ 692 (833)
.|++++|..+|+++++..+. +.. .|..++..+.+.|++++|..+|++..+.. +.+...|........ ..|+.++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666654322 222 56666666666666777777776666553 223333433222211 256777777
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003295 693 CLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASIN-IHP--NKITYTIMIGGYCKLGDMKEAAKLLNVMA 769 (833)
Q Consensus 693 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 769 (833)
.+|+++++.. +-+...|..++..+.+.|++++|..+|++..+.. ++| ....|..++..+.+.|+.++|..+++++.
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777666542 2345566666666666677777777777776642 233 34566666666666777777777777766
Q ss_pred Hc
Q 003295 770 EK 771 (833)
Q Consensus 770 ~~ 771 (833)
+.
T Consensus 269 ~~ 270 (308)
T 2ond_A 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.36 E-value=3.1e-11 Score=129.53 Aligned_cols=230 Identities=9% Similarity=-0.082 Sum_probs=167.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC------ccCHHHHH
Q 003295 573 LLHGLCSLGKMEEAIELWEECKRT----VFGP-DIYTYGVMIDGFCKADKIEEGETLFNEMISKKM------ELNPVVYN 641 (833)
Q Consensus 573 li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~ 641 (833)
....+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+++..+... .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455667778888888888887653 1111 245677777888888888888888887765311 11245778
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCChhHHH
Q 003295 642 TLIRAYCKIGNTTAAFRLSNDMKSRGIL-PT----SVTYSSLIHGLCNIGLIEDAKCLFDEMRKE----GL-LPNVACYT 711 (833)
Q Consensus 642 ~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~ 711 (833)
.+...|...|++++|.+.+++..+.... ++ ..++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888899999999999998887753111 11 246788889999999999999999998872 22 23456788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 003295 712 ALIGGYCKLGQMDEAESVLQEMASI----NIHPNKITYTIMIGGYCKLGD---MKEAAKLLNVMAEKGISP-DSITYNVF 783 (833)
Q Consensus 712 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p-~~~~~~~l 783 (833)
.+...|.+.|++++|...+++..+. +-+.....+..+...+...|+ +++|+.++++. +..| ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8999999999999999999988752 111122346778888889998 77777777765 2233 33578889
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH
Q 003295 784 MDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 784 ~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
+..|...|++++|.+.+++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999998876
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.36 E-value=5.2e-11 Score=131.21 Aligned_cols=213 Identities=13% Similarity=0.015 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCH-HHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHH
Q 003295 583 MEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKI-EEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSN 661 (833)
Q Consensus 583 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 661 (833)
+++++..+++..... +.+...+..+...|...|++ ++|++.|++.++..+. +...|..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455566666554432 34566777777778888888 8888888887776544 67788888888888888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc--------CChh
Q 003295 662 DMKSRGILPTSVTYSSLIHGLCNI---------GLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKL--------GQMD 724 (833)
Q Consensus 662 ~m~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------g~~~ 724 (833)
+..+.. |+...+..+...+... |++++|+..++++++.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 887763 5567777788888887 88888888888888753 33567788888888887 8888
Q ss_pred HHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 003295 725 EAESVLQEMASINIH---PNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCD 801 (833)
Q Consensus 725 ~A~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 801 (833)
+|...|++..+.. + .+...|..+..+|...|++++|.+.|+++++.. +.+...+..+...+...|++++|++.+.
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9998888888753 3 477888888888889999999999999888842 2356678888888888888888877554
Q ss_pred H
Q 003295 802 R 802 (833)
Q Consensus 802 ~ 802 (833)
+
T Consensus 317 ~ 317 (474)
T 4abn_A 317 K 317 (474)
T ss_dssp T
T ss_pred c
Confidence 3
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.35 E-value=1.7e-11 Score=135.08 Aligned_cols=215 Identities=9% Similarity=-0.038 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003295 199 FGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEV-QKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTK 277 (833)
Q Consensus 199 ~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 277 (833)
++.+++.++....... .+...|..+...+...|++ ++|+..|+++++-.+.+..+|..+..+|.+.|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5667777776655443 3788888888889999999 9999999998854566788888999999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHhc---------CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--------CChhH
Q 003295 278 MEELGIAPNVVTYNNIIHGLCRN---------GRLYEAFHLKEKMVLREVEPSLITYSILINGLIKL--------EKFDD 340 (833)
Q Consensus 278 m~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~--------g~~~~ 340 (833)
..+. .|+...+..+...|... |++++|++.|++..+.. +.+...|..+...|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 8876 46678888888888888 88999999999888763 44577888888888888 88889
Q ss_pred HHHHHHHHHHCCCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 003295 341 ANFVLKEMSVRGFV--PNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEM 418 (833)
Q Consensus 341 A~~~~~~m~~~g~~--p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~ 418 (833)
|...|++..+.... -+...|..+...|.+.|++++|.+.|++..+.... +...+..+...+...|++++|.+.+.++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 98888888876321 26778888888888888888888888888775332 5567777888888888888887655443
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.35 E-value=6.7e-11 Score=126.92 Aligned_cols=230 Identities=8% Similarity=-0.027 Sum_probs=173.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC------CCHhhHH
Q 003295 538 LILGCCKDGKPEEGFKLKEDMIKR----GIQP-DNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFG------PDIYTYG 606 (833)
Q Consensus 538 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~ 606 (833)
....+...|++++|...+++.++. +-.+ ...++..+...+...|++++|...+++..+.... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556677889999999999988764 1111 2457788888899999999999999887653111 1245678
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCc-----cCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CC-CCCHHHHH
Q 003295 607 VMIDGFCKADKIEEGETLFNEMISKKME-----LNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSR----GI-LPTSVTYS 676 (833)
Q Consensus 607 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~ 676 (833)
.+...|...|++++|...+++.++.... ....++..+...|...|++++|.+.+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888999999999999999888754211 11247888999999999999999999998762 22 33456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCChhHHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCC-HHHHHHH
Q 003295 677 SLIHGLCNIGLIEDAKCLFDEMRKE----GLLPNVACYTALIGGYCKLGQ---MDEAESVLQEMASINIHPN-KITYTIM 748 (833)
Q Consensus 677 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l 748 (833)
.+...+.+.|++++|...+++..+. +-+.....+..+...+...|+ +++|..++++.. ..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHHHHHHHH
Confidence 8999999999999999999998763 111122345677888888898 777888777762 2332 4477889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 003295 749 IGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 749 i~~~~~~g~~~~A~~~~~~m~~ 770 (833)
...|...|++++|.+.++++.+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999876
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.29 E-value=3.3e-11 Score=124.94 Aligned_cols=245 Identities=16% Similarity=0.048 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC------CC
Q 003295 497 TVTSNALIHGMCEAGNLKEAGKLLMEMLQR-------GLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKR------GI 563 (833)
Q Consensus 497 ~~~~~~li~~~~~~g~~~~A~~~l~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 563 (833)
..++..+...+...|++++|...++++.+. ........+..+...+...|++++|...++++++. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456666677777777777777777766652 11223344555556666666666666666655543 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHH
Q 003295 564 QP-DNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNT 642 (833)
Q Consensus 564 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 642 (833)
.| ...++..+...+...|++++|...++++.+.. ..............+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR----------------------------EKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH----------------------------HHHHCTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----------------------------HHhcCCCChHHHHHHHH
Confidence 11 22334444444455555555555544443320 00000001112334444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCh-
Q 003295 643 LIRAYCKIGNTTAAFRLSNDMKSR------GILP-TSVTYSSLIHGLCNIGLIEDAKCLFDEMRKE-------GLLPNV- 707 (833)
Q Consensus 643 li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~- 707 (833)
+...+...|++++|.+.++++.+. +..| ...++..+...+...|++++|...++++.+. ...+..
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 555555555555555555554432 1111 2234555566666666666666666666542 011111
Q ss_pred ------hHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 708 ------ACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 708 ------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
..+..+...+...+.+.+|...++...... +.+..+|..++.+|.+.|++++|.++++++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111222223333445555555555554321 22344566666666666666666666666654
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.27 E-value=7.1e-11 Score=122.34 Aligned_cols=155 Identities=15% Similarity=0.102 Sum_probs=74.5
Q ss_pred hccCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhc-------CC-CCCHHHHHHHH
Q 003295 195 KNLGFGYAIDVFSIFSSK-------GIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCR-------GV-SPDVFLFSTAI 259 (833)
Q Consensus 195 ~~~~~~~A~~~f~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-------~~-~~~~~~~~~li 259 (833)
..|++++|+..|+.+.+. .......++..+...+...|++++|...|+++.. +. +....++..+.
T Consensus 39 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 118 (311)
T 3nf1_A 39 SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLA 118 (311)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 455556666655555432 1112234455555555555555555555555541 11 12234455555
Q ss_pred HHHHhcCChhHHHHHHHHHHHc------CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCC-ChhhH
Q 003295 260 NAFCKRGRIEDAIGLFTKMEEL------GIAP-NVVTYNNIIHGLCRNGRLYEAFHLKEKMVLR------EVEP-SLITY 325 (833)
Q Consensus 260 ~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~t~ 325 (833)
..|...|++++|...|+++.+. +..| ...++..+...|...|++++|.+.++++... +..| ...++
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 198 (311)
T 3nf1_A 119 VLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTK 198 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 5555555555555555555442 1111 1234445555555555555555555555432 1011 12344
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 003295 326 SILINGLIKLEKFDDANFVLKEMS 349 (833)
Q Consensus 326 ~~li~~~~~~g~~~~A~~~~~~m~ 349 (833)
..+...+.+.|++++|...++++.
T Consensus 199 ~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 199 NNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555555555555555555554
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.26 E-value=9.4e-10 Score=117.65 Aligned_cols=230 Identities=10% Similarity=-0.022 Sum_probs=164.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-----c-cCHHHHH
Q 003295 573 LLHGLCSLGKMEEAIELWEECKRTVF-GPD----IYTYGVMIDGFCKADKIEEGETLFNEMISKKM-----E-LNPVVYN 641 (833)
Q Consensus 573 li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~-~~~~~~~ 641 (833)
....+...|++++|...|+++.+... .++ ..++..+...|...|++++|...+++..+... . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44556677888888888888765321 122 44677777888888888888888887765311 1 1245677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCChhHHHH
Q 003295 642 TLIRAYCKIGNTTAAFRLSNDMKSR----GILP-TSVTYSSLIHGLCNIGLIEDAKCLFDEMRKE----GLLPNVACYTA 712 (833)
Q Consensus 642 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~ 712 (833)
.+...|...|++++|.+.+++..+. +..+ ...++..+...+...|++++|...+++..+. +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 8888888999999999888887653 1111 2346777888889999999999999988761 22233567888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 003295 713 LIGGYCKLGQMDEAESVLQEMASI----NIHPNKITYTIMIGGYCKLGD---MKEAAKLLNVMAEKGISPD-SITYNVFM 784 (833)
Q Consensus 713 li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l~ 784 (833)
+...+.+.|++++|...+++..+. +-+.....+..+...+...|+ +++|+.++++. +..|+ ...+..++
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHH
Confidence 889999999999999999998763 112223456667777778888 77777777762 22232 35677899
Q ss_pred HHHhcCCCHHHHHHHHHHHHH
Q 003295 785 DGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 785 ~~~~~~g~~~~A~~~~~~m~~ 805 (833)
..|...|++++|.+.|++..+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998875
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.25 E-value=7.6e-10 Score=118.38 Aligned_cols=230 Identities=8% Similarity=-0.012 Sum_probs=169.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-----C-CCHhhH
Q 003295 537 TLILGCCKDGKPEEGFKLKEDMIKRGIQ-P----DNYTYNLLLHGLCSLGKMEEAIELWEECKRTVF-----G-PDIYTY 605 (833)
Q Consensus 537 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~-~~~~~~ 605 (833)
.....+...|++++|...+++..+.... + ...++..+...+...|+++.|...+++..+... . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 3445566788899999998888764211 2 235677788888889999999988888765311 1 124567
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC----CCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----CCCCCCHHHH
Q 003295 606 GVMIDGFCKADKIEEGETLFNEMISK----KME-LNPVVYNTLIRAYCKIGNTTAAFRLSNDMKS-----RGILPTSVTY 675 (833)
Q Consensus 606 ~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~ 675 (833)
+.+...|...|++++|.+.|++.++. +.. ....++..+...|...|++++|.+.+++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 78888899999999999998887753 111 1245778888999999999999999999876 43 3336778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCChhHHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCC-CHHHHHH
Q 003295 676 SSLIHGLCNIGLIEDAKCLFDEMRKEG----LLPNVACYTALIGGYCKLGQ---MDEAESVLQEMASINIHP-NKITYTI 747 (833)
Q Consensus 676 ~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p-~~~~~~~ 747 (833)
..+...+.+.|++++|...+++..+.. -+.....+..+...+...|+ +++|...+++.. ..| ....+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHH
Confidence 888999999999999999999998741 11123445666666777788 777877777632 222 2346778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 003295 748 MIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 748 li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
++..|...|++++|.+.++++.+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999875
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.24 E-value=2.3e-09 Score=114.44 Aligned_cols=300 Identities=14% Similarity=0.038 Sum_probs=197.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHhcCChhhHHHHHHHHHHCCCC-CCH----HH
Q 003295 499 TSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKV----TYNTLILGCCKDGKPEEGFKLKEDMIKRGIQ-PDN----YT 569 (833)
Q Consensus 499 ~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~~ 569 (833)
........+...|++++|...+++........+.. .++.+...+...|++++|...+++....... .+. .+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 44455566778899999999999987765433332 4566677788889999999998887764211 122 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC--C-CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCc----cCHH
Q 003295 570 YNLLLHGLCSLGKMEEAIELWEECKRT----VFG--P-DIYTYGVMIDGFCKADKIEEGETLFNEMISKKME----LNPV 638 (833)
Q Consensus 570 ~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~ 638 (833)
+..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+.... ....
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 566777788889999999988887653 211 2 2345566777888889999999888887764322 1235
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---ChhH
Q 003295 639 VYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPT--SVTYS----SLIHGLCNIGLIEDAKCLFDEMRKEGLLP---NVAC 709 (833)
Q Consensus 639 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~ 709 (833)
++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+ ....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 677777888888888888888888765311111 11111 22344668888888888888776542111 1224
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003295 710 YTALIGGYCKLGQMDEAESVLQEMAS----INIHPNK-ITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFM 784 (833)
Q Consensus 710 ~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 784 (833)
+..+...+...|++++|...+++... .|..++. ..+..+..++...|+.++|...+++..+.. +. ....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~ 329 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFI 329 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHH
Confidence 56677788888888888888887754 2222222 256667777888888888888888887731 11 1122
Q ss_pred HHHhcCCCHHHHHHHHHHHHHC
Q 003295 785 DGHCKGGNVEEAFKVCDRMLSE 806 (833)
Q Consensus 785 ~~~~~~g~~~~A~~~~~~m~~~ 806 (833)
..+...| +....+++.+...
T Consensus 330 ~~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 330 SHFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp HHHHTTH--HHHHHHHHHHHHT
T ss_pred HHHHHcc--HHHHHHHHHHHhC
Confidence 3444555 5667777777764
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.23 E-value=8.2e-10 Score=104.22 Aligned_cols=164 Identities=17% Similarity=0.077 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 003295 638 VVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGY 717 (833)
Q Consensus 638 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 717 (833)
..|..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 455566667777777777777777766553 3356667777777777888888888888777652 34566777777778
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHH
Q 003295 718 CKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAF 797 (833)
Q Consensus 718 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 797 (833)
...|++++|.+.++++.+.. +.+...+..++..+...|++++|.+.++++.+.. +.+..++..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888877653 5567777778888888888888888888887753 335677888888888888888888
Q ss_pred HHHHHHHH
Q 003295 798 KVCDRMLS 805 (833)
Q Consensus 798 ~~~~~m~~ 805 (833)
+.++++.+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887776
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.23 E-value=3.3e-09 Score=113.13 Aligned_cols=298 Identities=13% Similarity=0.113 Sum_probs=205.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCH----HHHH
Q 003295 466 TLLVSGLCKNGKQAEATELCFRLFEKGFTVNTV----TSNALIHGMCEAGNLKEAGKLLMEMLQRGLI-LDK----VTYN 536 (833)
Q Consensus 466 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~-~~~----~~~~ 536 (833)
......+...|++++|...+++........+.. +++.+...+...|++++|...+++..+.... .+. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344556778899999999999988764333332 5677778888999999999999887653211 122 3356
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--C--CHhhH
Q 003295 537 TLILGCCKDGKPEEGFKLKEDMIKR----GIQ--P-DNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFG--P--DIYTY 605 (833)
Q Consensus 537 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~--~~~~~ 605 (833)
.+...+...|++++|...+++.++. +.. | ....+..+...+...|++++|...+++....... + ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 6777888899999999999988764 221 2 2345666788889999999999999988764321 1 23467
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCccC-HHHHH-----HHHHHHHHcCChHHHHHHHHHHHhCCCCCC---HHHHH
Q 003295 606 GVMIDGFCKADKIEEGETLFNEMISKKMELN-PVVYN-----TLIRAYCKIGNTTAAFRLSNDMKSRGILPT---SVTYS 676 (833)
Q Consensus 606 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~ 676 (833)
..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++.......+. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 7788888999999999999998875422211 11222 233447789999999999988876432211 22456
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCh-hHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003295 677 SLIHGLCNIGLIEDAKCLFDEMRKE----GLLPNV-ACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGG 751 (833)
Q Consensus 677 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 751 (833)
.+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++..... +. ...+..
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~~~ 331 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFISH 331 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHHHH
Confidence 7778888999999999999988653 222222 356667788889999999999999988631 10 112233
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 003295 752 YCKLGDMKEAAKLLNVMAEK 771 (833)
Q Consensus 752 ~~~~g~~~~A~~~~~~m~~~ 771 (833)
+...| +....+++.+...
T Consensus 332 ~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 332 FVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp HHTTH--HHHHHHHHHHHHT
T ss_pred HHHcc--HHHHHHHHHHHhC
Confidence 44444 5666667766664
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.22 E-value=7.5e-10 Score=104.50 Aligned_cols=163 Identities=17% Similarity=0.005 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 003295 220 TCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCR 299 (833)
Q Consensus 220 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 299 (833)
.|..+...+...|++++|...|+++....+.+..++..+...+...|++++|...++++.+... .+...+..++..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 4445555666666666666666666644445566666666666666666666666666665432 244555556666666
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHH
Q 003295 300 NGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKI 379 (833)
Q Consensus 300 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~ 379 (833)
.|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+... .+...+..+...+.+.|++++|.+.
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666655432 23444455555555555555555555555544321 1344445555555555555555555
Q ss_pred HHHHHh
Q 003295 380 RDDMVS 385 (833)
Q Consensus 380 ~~~m~~ 385 (833)
+++..+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.20 E-value=1e-09 Score=107.96 Aligned_cols=207 Identities=11% Similarity=0.023 Sum_probs=157.1
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003295 600 PDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLI 679 (833)
Q Consensus 600 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 679 (833)
.|+..+......+.+.|++++|+..|++.++..+.++...+..+..++...|++++|++.+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45677888888899999999999999999988764677888788999999999999999999998874 33667788889
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCh-------hHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 003295 680 HGLCNIGLIEDAKCLFDEMRKEGLLPNV-------ACYTALIGGYCKLGQMDEAESVLQEMASINIHPN---KITYTIMI 749 (833)
Q Consensus 680 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li 749 (833)
..+...|++++|...+++..+.. +.+. ..|..+...+...|++++|++.|+++.+. .|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999998853 2234 45777888888999999999999999875 454 56778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003295 750 GGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSLDEITYTTLID 820 (833)
Q Consensus 750 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 820 (833)
.+|...| ...++++...+ ..+...|.... ....+.+++|+..+++.++ +.|+......++.
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~ 221 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHH
Confidence 8886554 34455555542 23444444433 3345778999999999998 5677444444443
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.19 E-value=6.2e-10 Score=127.48 Aligned_cols=164 Identities=14% Similarity=0.043 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 003295 637 PVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGG 716 (833)
Q Consensus 637 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 716 (833)
..+|+.+...|.+.|++++|++.|++.++.. +-+..+|..+...|.+.|++++|++.|+++++.. +-+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445555555555555555555555555442 2234445555555555555555555555555431 1234455555555
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCCHHH
Q 003295 717 YCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISP-DSITYNVFMDGHCKGGNVEE 795 (833)
Q Consensus 717 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 795 (833)
|.+.|++++|++.|++..+.. +-+...|..++.+|...|++++|++.|+++++. .| +...|..|+..|...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHH
Confidence 555555555555555555432 233445555555555555555555555555552 23 34455555555555555555
Q ss_pred HHHHHHHHHH
Q 003295 796 AFKVCDRMLS 805 (833)
Q Consensus 796 A~~~~~~m~~ 805 (833)
|.+.++++++
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.18 E-value=5.5e-10 Score=127.95 Aligned_cols=164 Identities=16% Similarity=0.109 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 003295 252 VFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILING 331 (833)
Q Consensus 252 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 331 (833)
..+|+.+..+|.+.|++++|++.|++..+.... +..+|+.+...|.+.|++++|++.|++..+.. +.+..+|..+...
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 445555555555555555555555555544221 34455555555555555555555555555432 2234455555555
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHH
Q 003295 332 LIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNA 411 (833)
Q Consensus 332 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 411 (833)
|.+.|++++|++.|++..+.... +...|+.+...|.+.|++++|++.|++..+.... +...|..+...+...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 55555555555555555544211 3445555666666666666666666665554222 344555566666666666666
Q ss_pred HHHHHHHH
Q 003295 412 ENALEEML 419 (833)
Q Consensus 412 ~~~l~~~~ 419 (833)
.+.++++.
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555554
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.13 E-value=3.8e-09 Score=103.81 Aligned_cols=206 Identities=16% Similarity=0.056 Sum_probs=163.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHH
Q 003295 565 PDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLI 644 (833)
Q Consensus 565 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 644 (833)
.|+..+......+...|++++|...|++..+....++...+..+..++.+.|++++|+..+++.++..+. +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4678888899999999999999999999998764467778877999999999999999999999998665 778899999
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhHHHHHH
Q 003295 645 RAYCKIGNTTAAFRLSNDMKSRGILPTS-------VTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPN---VACYTALI 714 (833)
Q Consensus 645 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li 714 (833)
..|...|++++|.+.+++..+.. +.+. ..|..+...+...|++++|++.|+++++. .|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999999864 3345 45778888899999999999999999985 465 56777788
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 003295 715 GGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPD-SITYNVFM 784 (833)
Q Consensus 715 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~ 784 (833)
..|...| ...++++...+ ..+...|.... ....+.+++|+..++++.+. .|+ ..+...+.
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l~ 221 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHH
Confidence 8876544 44556666543 34455554443 34567799999999999984 464 44444443
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.09 E-value=7.3e-10 Score=112.75 Aligned_cols=226 Identities=16% Similarity=0.111 Sum_probs=157.6
Q ss_pred HhcCCHHHHHHHHHHHhhC-------CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC------C-CccCHHHHHHH
Q 003295 578 CSLGKMEEAIELWEECKRT-------VFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISK------K-MELNPVVYNTL 643 (833)
Q Consensus 578 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l 643 (833)
...|++++|..++++..+. ..+....++..+...|...|++++|...++++.+. + ......++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3457777777777766542 22234667888899999999999999999998764 1 12345678889
Q ss_pred HHHHHHcCChHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-ChhH
Q 003295 644 IRAYCKIGNTTAAFRLSNDMKSR------G-ILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKE------GLLP-NVAC 709 (833)
Q Consensus 644 i~~~~~~g~~~~A~~~~~~m~~~------~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~ 709 (833)
...|...|++++|.+.+++..+. . .+....++..+...+...|++++|...++++.+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1 1224567788888999999999999999998864 1123 3467
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHH------HHHHHHHHcCCCC
Q 003295 710 YTALIGGYCKLGQMDEAESVLQEMASI-------NIHP-NKITYTIMIGGYCKLGDMKEAA------KLLNVMAEKGISP 775 (833)
Q Consensus 710 ~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p-~~~~~~~li~~~~~~g~~~~A~------~~~~~m~~~g~~p 775 (833)
+..+...|...|++++|...++++.+. ...+ ....|..+...+...+....+. ..++.... ..|
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 249 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSP 249 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCH
Confidence 888899999999999999999988752 1122 2234444444444433333222 22221111 112
Q ss_pred -CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 776 -DSITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 776 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
...++..++..|...|++++|..++++.++
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 346788999999999999999999999876
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.09 E-value=3.3e-09 Score=108.67 Aligned_cols=196 Identities=13% Similarity=0.002 Sum_probs=118.7
Q ss_pred HHccCCHHHHHHHHHHHHHC----CCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHH
Q 003295 612 FCKADKIEEGETLFNEMISK----KMEL-NPVVYNTLIRAYCKIGNTTAAFRLSNDMKSR----GILP-TSVTYSSLIHG 681 (833)
Q Consensus 612 ~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~ 681 (833)
|...|++++|...|.+..+. +..+ ...+|+.+..+|.+.|++++|+..+++..+. |-.. -..++..+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455555555555554432 1111 1345666666666666666666666665542 1000 12456677777
Q ss_pred HHhc-CCHHHHHHHHHHHHHCCC-CCC----hhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH------HHHHHHH
Q 003295 682 LCNI-GLIEDAKCLFDEMRKEGL-LPN----VACYTALIGGYCKLGQMDEAESVLQEMASINIHPNK------ITYTIMI 749 (833)
Q Consensus 682 ~~~~-g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li 749 (833)
|... |++++|+..|++.++..- ..+ ..++..+...+.+.|++++|+..|++..+....... ..|..++
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 8775 888888888888776310 001 345777888888888888888888888874322111 1567777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHh--cCCCHHHHHHHHHHHHHCCCCCC
Q 003295 750 GGYCKLGDMKEAAKLLNVMAEKGISPDS------ITYNVFMDGHC--KGGNVEEAFKVCDRMLSEGLSLD 811 (833)
Q Consensus 750 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~g~~p~ 811 (833)
.++...|++++|+..+++.++ +.|+. ..+..++.++. ..+++++|+..|+++.. +.|+
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~--l~~~ 272 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR--LDKW 272 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC--CCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc--cHHH
Confidence 788888888888888888776 34432 23445556554 45678888887766554 4444
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.08 E-value=1.1e-09 Score=111.26 Aligned_cols=220 Identities=15% Similarity=0.088 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhc-------CC-CCCHHHHHHHHHHHHhcCChhHH
Q 003295 200 GYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCR-------GV-SPDVFLFSTAINAFCKRGRIEDA 271 (833)
Q Consensus 200 ~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-------~~-~~~~~~~~~li~~~~~~g~~~~A 271 (833)
+.|++.+..+...+......++..+...+...|++++|...|+++.. +. +....++..+..+|...|++++|
T Consensus 25 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 104 (283)
T 3edt_B 25 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA 104 (283)
T ss_dssp HHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHH
Confidence 34455554444333233567888999999999999999999999872 22 33466888899999999999999
Q ss_pred HHHHHHHHHc-----CC-CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC------C-CCCChhhHHHHHHHHHhcCC
Q 003295 272 IGLFTKMEEL-----GI-AP-NVVTYNNIIHGLCRNGRLYEAFHLKEKMVLR------E-VEPSLITYSILINGLIKLEK 337 (833)
Q Consensus 272 ~~~~~~m~~~-----g~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~-~~p~~~t~~~li~~~~~~g~ 337 (833)
.+.|++..+. +. .| ...+|..+...|...|++++|...++++.+. + .+....++..+...+.+.|+
T Consensus 105 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 184 (283)
T 3edt_B 105 EPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK 184 (283)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Confidence 9999998764 11 12 3567888889999999999999999988764 1 12234677888888888999
Q ss_pred hhHHHHHHHHHHHC-------CCCCC-hhhHHHHHHHHHHcCChHHHHH------HHHHHHhCCCCCChhHHHHHHHHHH
Q 003295 338 FDDANFVLKEMSVR-------GFVPN-YVVYNTLIDGYCKKGNISEALK------IRDDMVSKGMSPNSVTFNSLIHGFC 403 (833)
Q Consensus 338 ~~~A~~~~~~m~~~-------g~~p~-~~~y~~li~~~~~~g~~~~A~~------~~~~m~~~g~~p~~~~~~~li~~~~ 403 (833)
+++|...+++..+. ...+. ...|..+...+...+....+.. .++..... ......++..+...|.
T Consensus 185 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~ 263 (283)
T 3edt_B 185 YQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVNTTLRSLGALYR 263 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHH
Confidence 99999988888753 11222 2233333333333333222222 22111111 1113346677777788
Q ss_pred hcCChhHHHHHHHHHHH
Q 003295 404 KSGQMDNAENALEEMLS 420 (833)
Q Consensus 404 ~~g~~~~A~~~l~~~~~ 420 (833)
+.|++++|...+++..+
T Consensus 264 ~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 264 RQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 88888888888877654
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.02 E-value=5.5e-08 Score=97.40 Aligned_cols=178 Identities=12% Similarity=0.059 Sum_probs=94.9
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003295 586 AIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKM-ELNPVVYNTLIRAYCKIGNTTAAFRLSNDMK 664 (833)
Q Consensus 586 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 664 (833)
|+..+++..+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+...+..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 33444444555666666666666666666655543 1245555566666666666666666666665
Q ss_pred hCCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003295 665 SRGILP-----TSVTYSSLIHG--LCNIG--LIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMAS 735 (833)
Q Consensus 665 ~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 735 (833)
+. .| +..+...+..+ ....| +..+|..+|+++.+. .|+..+...+..++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 33 23333444434 22223 566666666666553 24322223333356666666666666665443
Q ss_pred C-----CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 736 I-----NI----HPNKITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 736 ~-----g~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
. +. +.|..++..+|......|+ +|.++++++.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 1 00 2344455455544445554 66666666666
No 89
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.00 E-value=3.5e-07 Score=100.46 Aligned_cols=125 Identities=9% Similarity=0.005 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 003295 638 VVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCN-IGLIEDAKCLFDEMRKEGLLPNVACYTALIGG 716 (833)
Q Consensus 638 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 716 (833)
..|...+..+.+.+..+.|..+|++. .. ...+...|......-.. .++.+.|..+|+...+.. +-+...+...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 45666666666677778888888777 22 12233444332222222 235788888888877752 2234445556666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 717 YCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 717 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
..+.|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++.+
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 677788888888888762 2466777777766777888888887777764
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.00 E-value=2e-08 Score=102.85 Aligned_cols=89 Identities=10% Similarity=-0.076 Sum_probs=41.5
Q ss_pred HHhcCChhHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHhCCC---CC--ChhHHHHHHHH
Q 003295 332 LIKLEKFDDANFVLKEMSVR----GFVPN-YVVYNTLIDGYCKKGNISEALKIRDDMVSKGM---SP--NSVTFNSLIHG 401 (833)
Q Consensus 332 ~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~~~~~li~~ 401 (833)
|...|++++|...|++..+. |-.++ ..+|+.+...|.+.|++++|+..+++..+... .+ -..+++.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445555555555544321 11111 33455555555555666666555555443100 00 02244555555
Q ss_pred HHhc-CChhHHHHHHHHHHH
Q 003295 402 FCKS-GQMDNAENALEEMLS 420 (833)
Q Consensus 402 ~~~~-g~~~~A~~~l~~~~~ 420 (833)
|... |++++|.+.|++..+
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~ 146 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGE 146 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHH
Confidence 5553 556655555555543
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.98 E-value=1.2e-07 Score=95.00 Aligned_cols=182 Identities=10% Similarity=0.056 Sum_probs=139.7
Q ss_pred HHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003295 621 GETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGI-LPTSVTYSSLIHGLCNIGLIEDAKCLFDEMR 699 (833)
Q Consensus 621 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 699 (833)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 678888887765 44666677888999999999999999999877653 2366678888999999999999999999998
Q ss_pred HCCCCC-----ChhHHHHHHHH--HHhcC--ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 700 KEGLLP-----NVACYTALIGG--YCKLG--QMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 700 ~~g~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
+. .| +..+...|+.+ ....| +..+|..+|+++.+. .|+..+-..+..++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 84 56 35555556655 33344 899999999999864 46644444445589999999999999997665
Q ss_pred c-----CC---CC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC
Q 003295 771 K-----GI---SP-DSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSLD 811 (833)
Q Consensus 771 ~-----g~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 811 (833)
. +. .| |..+...++......|+ +|.++++++.+ ..|+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~ 285 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHE 285 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCC
Confidence 3 10 14 56777677767777787 89999999998 5566
No 92
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.98 E-value=1.2e-06 Score=96.17 Aligned_cols=123 Identities=14% Similarity=0.125 Sum_probs=59.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003295 604 TYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIG-NTTAAFRLSNDMKSRGILPTSVTYSSLIHGL 682 (833)
Q Consensus 604 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 682 (833)
.|...+..+.+.+..+.|..+|+.. .. +..+...|...+..-...| +.+.|..+|+...+.. +-+...+...++..
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 3444444444455566666666655 21 1123333332222222222 4666666666655542 11233334444545
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003295 683 CNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMA 734 (833)
Q Consensus 683 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 734 (833)
.+.|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++.
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55566666666666652 134555555555555566666666665554
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.98 E-value=2.6e-08 Score=87.98 Aligned_cols=128 Identities=18% Similarity=0.226 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003295 675 YSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCK 754 (833)
Q Consensus 675 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 754 (833)
+..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++.+.+ +.+...+..++..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4455556666666666666666666542 2345556666666666666666766666666543 3455566666666777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 755 LGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 755 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
.|++++|.+.++++.+.. +.+..++..++..+...|++++|.+.++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 777777777777766642 23456666677777777777777777776665
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.95 E-value=1.7e-08 Score=97.49 Aligned_cols=186 Identities=11% Similarity=0.035 Sum_probs=90.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003295 605 YGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCN 684 (833)
Q Consensus 605 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 684 (833)
+......+...|++++|+..|++.++..+. +...|... ..... ..........+...+.+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~-----~~~~~--------------~~~~~~~~~~lg~~~~~ 66 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWT-----NVDKN--------------SEISSKLATELALAYKK 66 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHH-----HSCTT--------------SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHh-----hhcch--------------hhhhHHHHHHHHHHHHH
Confidence 333445566777888888888777765332 23333330 00000 00001112225555556
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHH
Q 003295 685 IGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGD--MKEAA 762 (833)
Q Consensus 685 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~ 762 (833)
.|++++|+..|++.++.. +-+...+..+...+...|++++|...|++..+.. +.+..+|..++..|...|+ .+.+.
T Consensus 67 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~ 144 (208)
T 3urz_A 67 NRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLE 144 (208)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 666666666666665542 2244555556666666666666666666665542 3345555556555544433 22333
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003295 763 KLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSLDEITYT 816 (833)
Q Consensus 763 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 816 (833)
..+++... ..|....+..++.++...|++++|+..|++.++ +.|+.....
T Consensus 145 ~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~ 194 (208)
T 3urz_A 145 TDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQK 194 (208)
T ss_dssp HHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHH
T ss_pred HHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHH
Confidence 44443321 112222334444455555666666666666655 455543333
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.94 E-value=2.7e-08 Score=87.89 Aligned_cols=127 Identities=20% Similarity=0.192 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 003295 221 CNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRN 300 (833)
Q Consensus 221 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 300 (833)
|..+...+.+.|++++|..+|+++....+.+...+..++..+...|++++|...|+++.+.+. .+...+..++..+.+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHh
Confidence 444444555555555555555555422233444455555555555555555555555544321 1333444444455555
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 003295 301 GRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMS 349 (833)
Q Consensus 301 g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 349 (833)
|++++|.+.++++.... +.+..++..+...+.+.|++++|...++++.
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 55555555555444432 1233344444444444444444444444443
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.92 E-value=4e-08 Score=94.79 Aligned_cols=192 Identities=13% Similarity=0.035 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 003295 567 NYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDI-YTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIR 645 (833)
Q Consensus 567 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 645 (833)
...+......+...|++++|...|++..+.. |+. ..|.. ..... ...........+..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~-----~~~~~--------------~~~~~~~~~~~lg~ 62 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYW-----TNVDK--------------NSEISSKLATELAL 62 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHH-----HHSCT--------------TSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHH-----hhhcc--------------hhhhhHHHHHHHHH
Confidence 3444556667889999999999999998763 432 22221 00111 11112334455777
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC--h
Q 003295 646 AYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQ--M 723 (833)
Q Consensus 646 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~ 723 (833)
.|.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...|+++++.. +.+...|..+...|...|+ .
T Consensus 63 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 63 AYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHH
Confidence 8888899999999998888764 3467788888888899999999999999988853 3356778888887766553 3
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003295 724 DEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMD 785 (833)
Q Consensus 724 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 785 (833)
+.+...++.... ..|....+..+..++...|++++|+..|+++++ +.|+......+..
T Consensus 141 ~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 141 KKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 455556655542 123333455566777788999999999999888 5687665554443
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.92 E-value=3.5e-08 Score=99.19 Aligned_cols=100 Identities=9% Similarity=-0.019 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC-hhhHH
Q 003295 217 SLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPD---VFLFSTAINAFCKRGRIEDAIGLFTKMEELGIA-PN-VVTYN 291 (833)
Q Consensus 217 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-~~~~~ 291 (833)
+...+..+...+.+.|++++|...|++++...|.+ ..++..+..+|.+.|++++|...|++..+..+. |+ ..++.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 34444555555566666666666666665333333 455555666666666666666666666654221 11 23444
Q ss_pred HHHHHHHh--------cCChhHHHHHHHHHHhC
Q 003295 292 NIIHGLCR--------NGRLYEAFHLKEKMVLR 316 (833)
Q Consensus 292 ~li~~~~~--------~g~~~~A~~~~~~m~~~ 316 (833)
.+...+.+ .|++++|+..|+++.+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 55555555 66666666666666554
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.91 E-value=9.8e-08 Score=92.29 Aligned_cols=178 Identities=13% Similarity=0.040 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 003295 620 EGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIG----LIEDAKCLF 695 (833)
Q Consensus 620 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~A~~~~ 695 (833)
+|.+.|++..+.| ++..+..+...|...+++++|++.|++..+.| +...+..|...|.. + +.++|..+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455566655553 55666666666666677777777777766654 44555556666655 5 677777777
Q ss_pred HHHHHCCCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 003295 696 DEMRKEGLLPNVACYTALIGGYCK----LGQMDEAESVLQEMASINIH-PNKITYTIMIGGYCK----LGDMKEAAKLLN 766 (833)
Q Consensus 696 ~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~ 766 (833)
++..+.| +...+..|...|.. .+++++|.+.|++..+.|.. .+...+..|...|.. .+++++|+++|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776643 45556666666655 66777777777777765411 015666677777776 667777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcC-C-----CHHHHHHHHHHHHHCCCC
Q 003295 767 VMAEKGISPDSITYNVFMDGHCKG-G-----NVEEAFKVCDRMLSEGLS 809 (833)
Q Consensus 767 ~m~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g~~ 809 (833)
+..+. ..+...+..|...|... | +.++|..+|++..+.|..
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 77764 23444566666666542 2 677777777777776543
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.90 E-value=9.4e-07 Score=89.55 Aligned_cols=230 Identities=10% Similarity=0.064 Sum_probs=150.0
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH----Hcc---CCH
Q 003295 548 PEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLG--KMEEAIELWEECKRTVFGPDIYTYGVMIDGF----CKA---DKI 618 (833)
Q Consensus 548 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~~ 618 (833)
.++|+++++.++..++. +...|+.-...+...+ +++++++.++.+.... +.+..+|+.-...+ .+. +++
T Consensus 49 s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 35677777777665433 4455666666666666 7777777777776653 22333444333333 333 677
Q ss_pred HHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------HHH
Q 003295 619 EEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTT--AAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGL------IED 690 (833)
Q Consensus 619 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~------~~~ 690 (833)
++++.+++++++..++ +..+|+.-...+.+.|.++ ++++.++++.+... -|...|+.-...+...|. +++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHH
Confidence 8888888888877665 7788887777777778777 88888888887653 366666666555656555 778
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003295 691 AKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDE-AESVLQEMASIN--IHPNKITYTIMIGGYCKLGDMKEAAKLLNV 767 (833)
Q Consensus 691 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 767 (833)
+++.+++++... +-|...|+.+...+.+.|+..+ +..+.+++.+.+ -+.+...+..++.+|.+.|+.++|+++++.
T Consensus 205 El~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 888888887753 4467777777777777776433 455666655432 134667777788888888888888888888
Q ss_pred HHHcCCCC-CHHHHHHH
Q 003295 768 MAEKGISP-DSITYNVF 783 (833)
Q Consensus 768 m~~~g~~p-~~~~~~~l 783 (833)
+.++ +.| ....|+..
T Consensus 284 l~~~-~Dpir~~yW~~~ 299 (306)
T 3dra_A 284 LKSK-YNPIRSNFWDYQ 299 (306)
T ss_dssp HHHT-TCGGGHHHHHHH
T ss_pred HHhc-cChHHHHHHHHH
Confidence 7764 344 33444433
No 100
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.89 E-value=3.6e-08 Score=99.10 Aligned_cols=184 Identities=11% Similarity=0.023 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCc--cCHHHH
Q 003295 566 DNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPD---IYTYGVMIDGFCKADKIEEGETLFNEMISKKME--LNPVVY 640 (833)
Q Consensus 566 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~ 640 (833)
+...+..+...+.+.|++++|...|+++.+... .+ ...+..+..+|.+.|++++|+..|++.++..+. .....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 344455555555566666666666666555421 11 344455555555555666666555555554321 112334
Q ss_pred HHHHHHHHH--------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHH
Q 003295 641 NTLIRAYCK--------IGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTA 712 (833)
Q Consensus 641 ~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 712 (833)
..+..++.. .|++++|...|++..+... .+......+. .+..+... ....+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~~--------------~~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP-NHELVDDATQ--------------KIRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT-TCTTHHHHHH--------------HHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc-CchhHHHHHH--------------HHHHHHHH----HHHHHHH
Confidence 444445544 5555555555555554321 1111111110 00000000 0011244
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHc
Q 003295 713 LIGGYCKLGQMDEAESVLQEMASINIHPN----KITYTIMIGGYCKL----------GDMKEAAKLLNVMAEK 771 (833)
Q Consensus 713 li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 771 (833)
+...|.+.|++++|+..|+++.+. .|+ ...+..++.+|... |++++|+..++++++.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 566666777777777777776653 222 34556666666654 6677777777777663
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.87 E-value=3.4e-08 Score=113.76 Aligned_cols=173 Identities=16% Similarity=-0.023 Sum_probs=119.1
Q ss_pred HccCCHHHHHHHHHHHH--------HCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003295 613 CKADKIEEGETLFNEMI--------SKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCN 684 (833)
Q Consensus 613 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 684 (833)
...|++++|++.+++.. +..+. +...+..+...+.+.|++++|++.+++..+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE-SVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc-chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 45666777777776666 33322 55667777777777777777777777777653 3366677777777778
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003295 685 IGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKL 764 (833)
Q Consensus 685 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 764 (833)
.|++++|++.|+++++.. +.+...|..+..+|.+.|++++ ++.|+++.+.+ +.+...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888877752 2355677777777888888888 88888877653 44567777888888888888888888
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHhcCCC
Q 003295 765 LNVMAEKGISPD-SITYNVFMDGHCKGGN 792 (833)
Q Consensus 765 ~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 792 (833)
++++++ +.|+ ...+..++.++...|+
T Consensus 557 ~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 887776 4464 4567777777766554
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.87 E-value=1.6e-08 Score=116.62 Aligned_cols=173 Identities=10% Similarity=-0.058 Sum_probs=137.8
Q ss_pred HhcCChhHHHHHHHHhh--------cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 003295 229 VKANEVQKGIEVFETMC--------RGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRN 300 (833)
Q Consensus 229 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 300 (833)
...|++++|+..|+++. ...+.+...+..+..++.+.|++++|.+.|++..+.... +...|..+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHc
Confidence 67889999999999987 555677788888999999999999999999998886433 667888888999999
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHH
Q 003295 301 GRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIR 380 (833)
Q Consensus 301 g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~ 380 (833)
|++++|.+.|++..+.. +.+...|..+...+.+.|++++ ...|++..+.... +...|..+..+|.+.|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999988763 3366778888889999999999 9999998876332 5678888889999999999999999
Q ss_pred HHHHhCCCCCC-hhHHHHHHHHHHhcCC
Q 003295 381 DDMVSKGMSPN-SVTFNSLIHGFCKSGQ 407 (833)
Q Consensus 381 ~~m~~~g~~p~-~~~~~~li~~~~~~g~ 407 (833)
++..+. .|+ ...+..+..++...|+
T Consensus 558 ~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTT--STTHHHHHHHHHHHTC----
T ss_pred Hhhccc--CcccHHHHHHHHHHHHccCC
Confidence 888775 343 5567777777766554
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.85 E-value=1.6e-06 Score=87.85 Aligned_cols=219 Identities=11% Similarity=0.039 Sum_probs=148.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH----Hhc---CC
Q 003295 477 KQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAG--NLKEAGKLLMEMLQRGLILDKVTYNTLILGC----CKD---GK 547 (833)
Q Consensus 477 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~----~~~---g~ 547 (833)
..++|++..+.++...+. +..+|+.-...+...| ++++++..++.+...++. +..+|+.-...+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 346777777777776433 6667777777777777 888888888888887766 566666544444 444 67
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCC------HH
Q 003295 548 PEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKME--EAIELWEECKRTVFGPDIYTYGVMIDGFCKADK------IE 619 (833)
Q Consensus 548 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~ 619 (833)
+++++.+++.+++...+ +..+|+.-.-.+.+.|.++ ++++.++++.+.. +.|...|+.-...+.+.++ ++
T Consensus 126 ~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 78888888888877544 7777777777777777777 7788888777764 3456666665555656555 77
Q ss_pred HHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003295 620 EGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTA-AFRLSNDMKSRG--ILPTSVTYSSLIHGLCNIGLIEDAKCLFD 696 (833)
Q Consensus 620 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 696 (833)
++++.+++++...+. |...|+.....+.+.|+..+ +.++..++.+.+ -+.+...+..+...+.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 777777777776655 77777777777777776444 334555444322 13355666677777777777777777777
Q ss_pred HHHH
Q 003295 697 EMRK 700 (833)
Q Consensus 697 ~m~~ 700 (833)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7765
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.84 E-value=3.3e-08 Score=92.53 Aligned_cols=59 Identities=12% Similarity=0.121 Sum_probs=32.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003295 223 FLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEEL 281 (833)
Q Consensus 223 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (833)
.+...+.+.|++++|...|++.+...|.+...+..+..++.+.|++++|...|++....
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 69 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE 69 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc
Confidence 34444555566666666665555333445555555566666666666666666555443
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.83 E-value=2.2e-07 Score=89.80 Aligned_cols=175 Identities=13% Similarity=0.049 Sum_probs=96.6
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcC----ChHHHHHHHH
Q 003295 586 AIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIG----NTTAAFRLSN 661 (833)
Q Consensus 586 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~ 661 (833)
|.+.|++..+.| +...+..+...|...+++++|+..|++..+.| ++..+..+...|.. + ++++|++.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 344444444432 34444444455555555555555555555443 34444444444444 4 5566666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CChhHHHHHHHHHHh----cCChhHHHHHHHH
Q 003295 662 DMKSRGILPTSVTYSSLIHGLCN----IGLIEDAKCLFDEMRKEGLL-PNVACYTALIGGYCK----LGQMDEAESVLQE 732 (833)
Q Consensus 662 ~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~~ 732 (833)
+..+.| +...+..|...|.. .+++++|..+|++..+.|.. .+...+..|...|.. .++.++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 655543 44455555555554 56666666666666665411 014556666666666 5667777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 003295 733 MASINIHPNKITYTIMIGGYCKL-G-----DMKEAAKLLNVMAEKG 772 (833)
Q Consensus 733 m~~~g~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g 772 (833)
..+. +.+...+..|...|... | ++++|..++++..+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7664 23444566666666543 2 6777777777777665
No 106
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.81 E-value=1.7e-08 Score=91.54 Aligned_cols=110 Identities=7% Similarity=-0.122 Sum_probs=49.5
Q ss_pred hcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 003295 230 KANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHL 309 (833)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 309 (833)
..|++++|+..++......+.+...+..+...|.+.|++++|.+.|++..+..+. +..+|..+...|.+.|++++|+..
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHH
Confidence 3344445555554444222223334444445555555555555555554443221 344444455555555555555555
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCChhHH
Q 003295 310 KEKMVLREVEPSLITYSILINGLIKLEKFDDA 341 (833)
Q Consensus 310 ~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A 341 (833)
|++..+.. +.+..+|..+...|.+.|++++|
T Consensus 88 ~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a 118 (150)
T 4ga2_A 88 YRRSVELN-PTQKDLVLKIAELLCKNDVTDGR 118 (150)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCChHHH
Confidence 55444432 12334444444444444444433
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.80 E-value=2.5e-07 Score=90.45 Aligned_cols=184 Identities=11% Similarity=-0.052 Sum_probs=116.3
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH--HHHHH
Q 003295 602 IYTYGVMIDGFCKADKIEEGETLFNEMISKKMELN--PVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTS--VTYSS 677 (833)
Q Consensus 602 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ 677 (833)
...+..+...+.+.|++++|+..|+++++..+... ...+..+..+|.+.|++++|+..|+++.+....... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455566677788888888888888877644311 356777778888888888888888888776322111 13444
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003295 678 LIHGLCN------------------IGLIEDAKCLFDEMRKEGLLPNV-ACYTALIGGYCKLGQMDEAESVLQEMASINI 738 (833)
Q Consensus 678 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 738 (833)
+..++.. .|+.++|...|+++++. .|+. ..+....... .+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH----------HHHHHH-----
Confidence 4444443 34555555555555553 2322 1111111000 000000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H---HHHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Q 003295 739 HPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPD-S---ITYNVFMDGHCKGGNVEEAFKVCDRMLSEG 807 (833)
Q Consensus 739 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 807 (833)
......++..|.+.|++++|+..|+++++. .|+ . ..+..++.++.+.|++++|++.++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 011235677889999999999999999985 343 2 578889999999999999999999888753
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.80 E-value=5.1e-08 Score=91.20 Aligned_cols=163 Identities=12% Similarity=0.067 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHH-
Q 003295 253 FLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILING- 331 (833)
Q Consensus 253 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~- 331 (833)
..+......+.+.|++++|...|++..+..+. +...+..+...+.+.|++++|...+++..... |+...+..+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHH
Confidence 34556778888999999999999988765432 56788889999999999999999998887653 344333322211
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCChh
Q 003295 332 LIKLEKFDDANFVLKEMSVRGFVP-NYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSP-NSVTFNSLIHGFCKSGQMD 409 (833)
Q Consensus 332 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~ 409 (833)
+...++..+|...+++..+. .| +...+..+...+.+.|++++|...|+++.+..+.+ +...+..+...+...|+.+
T Consensus 84 ~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 22333445678888888776 34 47788888888899999999999999888875443 3557888888888889999
Q ss_pred HHHHHHHHHHH
Q 003295 410 NAENALEEMLS 420 (833)
Q Consensus 410 ~A~~~l~~~~~ 420 (833)
+|...|++...
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99888887654
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.80 E-value=3.2e-07 Score=89.64 Aligned_cols=184 Identities=10% Similarity=0.019 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh--hhHHHHH
Q 003295 220 TCNFLLNSLVKANEVQKGIEVFETMCRGVSPD---VFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNV--VTYNNII 294 (833)
Q Consensus 220 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li 294 (833)
.+..+...+.+.|++++|...|+++....|.+ ...+..+..+|.+.|++++|...|+++.+..+.... ..+..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 33444444555555555555555555211111 234444555555555555555555555554221111 1222233
Q ss_pred HHHH------------------hcCChhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 003295 295 HGLC------------------RNGRLYEAFHLKEKMVLREVEPSL-ITYSILINGLIKLEKFDDANFVLKEMSVRGFVP 355 (833)
Q Consensus 295 ~~~~------------------~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 355 (833)
..+. ..|++++|...|+++.+.. |+. ..+...... ..+...+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~~------ 147 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRLA------ 147 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHHH------
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHHH------
Confidence 3332 3567777777777777652 332 222221110 00000000
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 003295 356 NYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPN--SVTFNSLIHGFCKSGQMDNAENALEEMLSRGL 423 (833)
Q Consensus 356 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~ 423 (833)
.....+...|.+.|++++|...|+++++..+... ...+..+..++.+.|+.++|.+.++.+...+.
T Consensus 148 --~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 148 --KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 1123456778888999999999988887532211 24577788888889999999999888877643
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.77 E-value=9.9e-08 Score=97.22 Aligned_cols=165 Identities=8% Similarity=-0.051 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHH-HHHH
Q 003295 217 SLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYN-NIIH 295 (833)
Q Consensus 217 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~ 295 (833)
+...+..+...+.+.|++++|...|++++...|.+...+..+...+.+.|++++|...+++..... |+..... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~ 193 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHH
Confidence 344555666667777777777777777775455666677777777777777777777777766542 3333222 2222
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHHcCChH
Q 003295 296 GLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVP-NYVVYNTLIDGYCKKGNIS 374 (833)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~y~~li~~~~~~g~~~ 374 (833)
.+.+.|+.++|...+++..... +.+...+..+...+...|++++|...|+++.+..... +...+..++..|...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 3445566666666666666543 3345566666666666666666666666666552221 1445666666666666666
Q ss_pred HHHHHHHHHH
Q 003295 375 EALKIRDDMV 384 (833)
Q Consensus 375 ~A~~~~~~m~ 384 (833)
+|...+++..
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 6666665543
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.76 E-value=1.6e-07 Score=95.68 Aligned_cols=164 Identities=15% Similarity=0.015 Sum_probs=127.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHH-H
Q 003295 636 NPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTAL-I 714 (833)
Q Consensus 636 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i 714 (833)
+...+..+...+.+.|++++|...|++..... +.+...+..+...+.+.|++++|...++++... .|+....... .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 55666777778888888888888888888764 346677888888888899999999988888764 4554433322 3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhcCC
Q 003295 715 GGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPD---SITYNVFMDGHCKGG 791 (833)
Q Consensus 715 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g 791 (833)
..+.+.++.++|...+++..+.. +.+...+..+...+...|++++|+..+.++++. .|+ ...+..++..+...|
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHHcC
Confidence 33667788888888888888764 567788889999999999999999999999885 343 567888999999999
Q ss_pred CHHHHHHHHHHHHH
Q 003295 792 NVEEAFKVCDRMLS 805 (833)
Q Consensus 792 ~~~~A~~~~~~m~~ 805 (833)
+.++|...+++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999888887654
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.75 E-value=4.7e-08 Score=88.58 Aligned_cols=141 Identities=12% Similarity=-0.054 Sum_probs=78.2
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHH
Q 003295 647 YCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEA 726 (833)
Q Consensus 647 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 726 (833)
+...|++++|++.++...... +.+...+..+...|.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 334455566666555554431 1123334455566666666666666666666542 22455666666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCC-CHHHHHHHHHHHhcCCC
Q 003295 727 ESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKL-LNVMAEKGISP-DSITYNVFMDGHCKGGN 792 (833)
Q Consensus 727 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~p-~~~~~~~l~~~~~~~g~ 792 (833)
+..|++..+.. +-+...|..++..|.+.|++++|.+. ++++++. .| +..+|......+...|+
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 66666666542 33455666666666666666554443 3555552 34 44555555555555553
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.71 E-value=1.6e-07 Score=96.91 Aligned_cols=156 Identities=11% Similarity=0.033 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-Ch
Q 003295 638 VVYNTLIRAYCKIGNTTAAFRLSNDMKSR----GILP-TSVTYSSLIHGLCNIGLIEDAKCLFDEMRKE----GLLP-NV 707 (833)
Q Consensus 638 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~ 707 (833)
.+|+.+...|.+.|++++|+..+++..+. |-.. ...++..+...|.. |++++|+..|++.++. |-.. ..
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 35555666666667777777766665432 1110 12456667777777 8888888888877653 1000 13
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------
Q 003295 708 ACYTALIGGYCKLGQMDEAESVLQEMASI----NIHPN-KITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPD------ 776 (833)
Q Consensus 708 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------ 776 (833)
.+++.+...|.+.|++++|+..|++..+. +..++ ...+..++.++...|++++|...+++.+ . .|+
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e 232 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSED 232 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHH
Confidence 56777888888888888888888887752 11111 2256667777777888888888888887 3 232
Q ss_pred HHHHHHHHHHHhcCCCHHHHHH
Q 003295 777 SITYNVFMDGHCKGGNVEEAFK 798 (833)
Q Consensus 777 ~~~~~~l~~~~~~~g~~~~A~~ 798 (833)
......++.++ ..|+.+.+.+
T Consensus 233 ~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 233 CAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHH-HhcCHHHHHH
Confidence 12345555555 5677666655
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.70 E-value=2e-07 Score=105.48 Aligned_cols=152 Identities=9% Similarity=-0.082 Sum_probs=66.9
Q ss_pred cCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 003295 197 LGFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFT 276 (833)
Q Consensus 197 ~~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 276 (833)
|++++|++.|++..+..+. +..+|..+...+.+.|++++|...|++..+-.+.+..++..+..+|.+.|++++|.+.|+
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3445555555554443322 344555555555555555555555555553334445555555555555555555555555
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---CChhHHHHHHHHHHHC
Q 003295 277 KMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKL---EKFDDANFVLKEMSVR 351 (833)
Q Consensus 277 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~---g~~~~A~~~~~~m~~~ 351 (833)
+..+.... +...|..+...|.+.|++++|.+.+++..+.. +.+...+..+...+... |++++|.+.+++..+.
T Consensus 82 ~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 82 QASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 55544221 34445555555555555555555555554432 22334444444444444 5555555555554443
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.69 E-value=3.4e-07 Score=103.59 Aligned_cols=152 Identities=13% Similarity=0.041 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHH
Q 003295 581 GKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLS 660 (833)
Q Consensus 581 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 660 (833)
|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.+.+++..+..+. +...|..+...|...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45555666655555432 223445555555555556666666665555554333 4555555555555555555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc---CChhHHHHHHHHHHhC
Q 003295 661 NDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKL---GQMDEAESVLQEMASI 736 (833)
Q Consensus 661 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 736 (833)
++..+.. +.+...+..+...+.+.|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 5555542 2244455555555555555555555555555532 22344455555555555 5555555555555543
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.67 E-value=9e-07 Score=91.14 Aligned_cols=160 Identities=13% Similarity=0.081 Sum_probs=72.3
Q ss_pred HHHHHHhcCChhHHHHHHHHhhc-----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CCC--hhhHHH
Q 003295 224 LLNSLVKANEVQKGIEVFETMCR-----GVSPD-VFLFSTAINAFCKRGRIEDAIGLFTKMEELGI---APN--VVTYNN 292 (833)
Q Consensus 224 ll~~~~~~g~~~~A~~~~~~~~~-----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~~~ 292 (833)
....|...|++++|...|.+... +.+.. ..+|+.+..+|.+.|++++|...|++..+.-. .+. ..+++.
T Consensus 42 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 121 (307)
T 2ifu_A 42 AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDR 121 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555666666666655541 11111 23455555555555666666665555443200 011 234445
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-hhhHHH
Q 003295 293 IIHGLCRNGRLYEAFHLKEKMVLREVEP-----SLITYSILINGLIKLEKFDDANFVLKEMSVR----GFVPN-YVVYNT 362 (833)
Q Consensus 293 li~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~y~~ 362 (833)
+...|.+ |++++|++.|++..+..... ...+++.+...|.+.|++++|+..|++..+. +..+. ...+..
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 5555544 55555555555554321000 0234444555555555555555555554432 10000 113333
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 003295 363 LIDGYCKKGNISEALKIRDDMV 384 (833)
Q Consensus 363 li~~~~~~g~~~~A~~~~~~m~ 384 (833)
+...+...|++++|...|++..
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHh
Confidence 4444444455555555555544
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.64 E-value=3.8e-06 Score=85.79 Aligned_cols=163 Identities=9% Similarity=-0.065 Sum_probs=117.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhHHHH
Q 003295 643 LIRAYCKIGNTTAAFRLSNDMKSRGI-LPTS----VTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLL-PN----VACYTA 712 (833)
Q Consensus 643 li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ 712 (833)
.+..+...|++++|.+.+++..+... .|+. ..+..+...+...|++++|+..++++.+.... ++ ..+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667778888888888888776421 1221 12334566666778889999999988874211 22 236888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHH
Q 003295 713 LIGGYCKLGQMDEAESVLQEMAS----I-NIHPN-KITYTIMIGGYCKLGDMKEAAKLLNVMAEK----GISPD-SITYN 781 (833)
Q Consensus 713 li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~ 781 (833)
+...|...|++++|...++++.+ . +..+. ..+|..++..|.+.|++++|+++++++++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88889999999999999988873 1 11222 237888999999999999999999988752 22222 57889
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHHH
Q 003295 782 VFMDGHCKGGN-VEEAFKVCDRMLS 805 (833)
Q Consensus 782 ~l~~~~~~~g~-~~~A~~~~~~m~~ 805 (833)
.++.++.+.|+ +++|.+.+++.+.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999994 6999999988875
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.63 E-value=7.1e-07 Score=77.82 Aligned_cols=107 Identities=15% Similarity=0.019 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003295 708 ACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGH 787 (833)
Q Consensus 708 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 787 (833)
..+......|.+.|++++|++.|++.++.. +.+...|..++.+|.+.|++++|++.++++++.. +.+...|..++.++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 345555666666666666666666666543 4455666666666666666666666666666632 22455666666666
Q ss_pred hcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 003295 788 CKGGNVEEAFKVCDRMLSEGLSLD-EITYTTL 818 (833)
Q Consensus 788 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 818 (833)
...|++++|++.|++.++ +.|+ ...+..|
T Consensus 92 ~~~~~~~~A~~~~~~al~--l~P~~~~a~~~l 121 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ--VDPSNEEAREGV 121 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--HCcCCHHHHHHH
Confidence 666666666666666666 4454 3333333
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.61 E-value=1.3e-06 Score=84.31 Aligned_cols=129 Identities=13% Similarity=-0.023 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 003295 637 PVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGG 716 (833)
Q Consensus 637 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 716 (833)
...+..+...+...|++++|.+.+++.. .|+...+..+...+...|++++|...+++..+.. +.+...|..+..+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 3445566667777788888888777653 4566777777777778888888888888777653 3455677777777
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003295 717 YCKLGQMDEAESVLQEMASINIHPNK----------------ITYTIMIGGYCKLGDMKEAAKLLNVMAEK 771 (833)
Q Consensus 717 ~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 771 (833)
|...|++++|.+.|++..+.. +.+. ..+..++.+|...|++++|.+.++++.+.
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 777888888888887777643 2222 56777777777777777777777777763
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.61 E-value=4.5e-06 Score=85.24 Aligned_cols=185 Identities=9% Similarity=-0.050 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--hh
Q 003295 639 VYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTS-----VTYSSLIHGLCNIGLIEDAKCLFDEMRKEGL---LPN--VA 708 (833)
Q Consensus 639 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~ 708 (833)
.+...+..+...|++++|.+.+++..+....... ..+..+...+...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4444566677778888888888777665322111 1233455566778899999999988875311 111 34
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-CH
Q 003295 709 CYTALIGGYCKLGQMDEAESVLQEMASI--NIHPN----KITYTIMIGGYCKLGDMKEAAKLLNVMAEKG----ISP-DS 777 (833)
Q Consensus 709 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~ 777 (833)
+|+.+...|...|++++|...++++.+. ..+.+ ..+|..++..|...|++++|++++++.++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999999988731 11121 2578889999999999999999999887631 111 15
Q ss_pred HHHHHHHHHHhcCCCHHHH-HHHHHHHHH----CCCCCCHHHHHHHHHhhc
Q 003295 778 ITYNVFMDGHCKGGNVEEA-FKVCDRMLS----EGLSLDEITYTTLIDGWQ 823 (833)
Q Consensus 778 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~~----~g~~p~~~~~~~l~~~~~ 823 (833)
.+|..++..|.+.|++++| ...+++.+. .|-..-...+..++..+.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~ 287 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVNKISRLE 287 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHh
Confidence 7889999999999999999 777777654 232223556666665554
No 121
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.60 E-value=2.2e-05 Score=80.22 Aligned_cols=174 Identities=11% Similarity=0.042 Sum_probs=117.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-C-ChhhH
Q 003295 475 NGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAG-NLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKD-G-KPEEG 551 (833)
Q Consensus 475 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~-g-~~~~A 551 (833)
.+..++|++++++++...+. +..+|+.-...+...| .+++++..++.+...+++ +..+|+.-...+.+. + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHH
Confidence 34456777777777776433 6667777777777777 488888888888887776 777777766666665 6 77888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCC------
Q 003295 552 FKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKME--------EAIELWEECKRTVFGPDIYTYGVMIDGFCKADK------ 617 (833)
Q Consensus 552 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------ 617 (833)
+++++.+++...+ |...|+.-.-.+.+.|.++ ++++.++++.+.. +.|...|+.....+.+.++
T Consensus 145 L~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 145 IEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchH
Confidence 8888888876544 6666666555555555554 7777777777654 3466666666666666654
Q ss_pred -HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCCh
Q 003295 618 -IEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNT 653 (833)
Q Consensus 618 -~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 653 (833)
++++++.+++++...+. |...|+.+-..+.+.|+.
T Consensus 223 ~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCC
Confidence 56777777777766555 666776666666555543
No 122
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.58 E-value=9.8e-07 Score=87.16 Aligned_cols=197 Identities=9% Similarity=-0.058 Sum_probs=128.0
Q ss_pred ccCCHHHHHHHHHHHHHCCCccCHHHHHHH-------HHHHHHcCChHHHHHHHHHHHhCCCCCC---------------
Q 003295 614 KADKIEEGETLFNEMISKKMELNPVVYNTL-------IRAYCKIGNTTAAFRLSNDMKSRGILPT--------------- 671 (833)
Q Consensus 614 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------- 671 (833)
..++...|.+.|.++.+..+. ....|..+ ...+.+.++..+++..+..-... .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 466777777777777766544 56666666 45555555555555555544431 111
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--H
Q 003295 672 -------SVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPN--K 742 (833)
Q Consensus 672 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~ 742 (833)
......+...+...|++++|.++|+.+...+ |+......+...+.+.|++++|+..|+...+.. .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1123345566778888888888888777643 544455666667788888888888887665421 111 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003295 743 ITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPD--SITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSLDEITYTTL 818 (833)
Q Consensus 743 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 818 (833)
..+..+..++...|++++|+..|++.......|. ......++.++.+.|+.++|...|+++.. ..|+...+..|
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~~~~~~aL 247 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHHHHHHH
Confidence 3677788888888888888888888875332253 34667777888888888888888888888 45554444443
No 123
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.57 E-value=2.8e-05 Score=79.55 Aligned_cols=169 Identities=11% Similarity=0.026 Sum_probs=82.8
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHcc-C-CHHHHHHHH
Q 003295 549 EEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLG-KMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKA-D-KIEEGETLF 625 (833)
Q Consensus 549 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A~~~~ 625 (833)
++|++++++++..... +..+|+.-...+...| .+++++.+++.+.... +.+..+|+.-...+.+. + +++++++++
T Consensus 71 e~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 71 ERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 4455555555554322 3334444444444444 3555555555555432 22333444433333333 3 455555555
Q ss_pred HHHHHCCCccCHHHHHHHHHHHHHcCChH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------HHH
Q 003295 626 NEMISKKMELNPVVYNTLIRAYCKIGNTT--------AAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGL-------IED 690 (833)
Q Consensus 626 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-------~~~ 690 (833)
+++++..++ |..+|+.-...+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.+. +++
T Consensus 149 ~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 149 HGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHH
Confidence 555555444 5555555444444444444 5666666665543 2255555555555544443 466
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC
Q 003295 691 AKCLFDEMRKEGLLPNVACYTALIGGYCKLGQ 722 (833)
Q Consensus 691 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 722 (833)
+++.+++++... +-|...|+.+-..+.+.|+
T Consensus 227 ELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 227 ELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 666666666542 3355555555555555444
No 124
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.57 E-value=1.2e-06 Score=78.98 Aligned_cols=102 Identities=15% Similarity=0.031 Sum_probs=81.6
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 003295 706 NVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISP-DSITYNVFM 784 (833)
Q Consensus 706 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~ 784 (833)
+...+..+...+.+.|++++|...|+++.+.. +.+...|..+..+|...|++++|+..|+++++. .| +...|..++
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHH
Confidence 34567777888888888888888888888764 556778888888888888888888888888884 34 567888888
Q ss_pred HHHhcCCCHHHHHHHHHHHHHCCCCCCH
Q 003295 785 DGHCKGGNVEEAFKVCDRMLSEGLSLDE 812 (833)
Q Consensus 785 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 812 (833)
.+|...|++++|+..|++.++ +.||.
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~--l~~~~ 137 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQ--HSNDE 137 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCCCH
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCH
Confidence 888888888888888888888 44553
No 125
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.57 E-value=3.3e-06 Score=86.24 Aligned_cols=202 Identities=9% Similarity=0.004 Sum_probs=130.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCh----h
Q 003295 214 IFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIA-PNV----V 288 (833)
Q Consensus 214 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~ 288 (833)
..|+..+...+...+.-. .+ .++..-..........+...+..+...|++++|...+++..+.... |+. .
T Consensus 42 ~~~~~~~l~~i~~~l~~~--~~---~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~ 116 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQIP--II---HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQ 116 (293)
T ss_dssp CCCCHHHHHHHHHHHTCC--TH---HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcC--HH---HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHH
Confidence 457777766666665322 11 1221111000111223334467788889999999999888764221 221 1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCChhHHHHHHHHHHH----C-CCCCC-h
Q 003295 289 TYNNIIHGLCRNGRLYEAFHLKEKMVLREVE-PS----LITYSILINGLIKLEKFDDANFVLKEMSV----R-GFVPN-Y 357 (833)
Q Consensus 289 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~-~ 357 (833)
.|..+...+...|++++|+..|+++...... ++ ..+|+.+...|...|++++|...|+++.+ . +..+. .
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 3345666677778899999999988874322 22 22578888888889999999988888873 1 11222 3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCCC-hhHHHHHHHHHHhcCC-hhHHHHHHHHHHH
Q 003295 358 VVYNTLIDGYCKKGNISEALKIRDDMVSK----GMSPN-SVTFNSLIHGFCKSGQ-MDNAENALEEMLS 420 (833)
Q Consensus 358 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~-~~~A~~~l~~~~~ 420 (833)
.+|..+...|.+.|++++|.+.+++..+. +..+. ..+|..+...|.+.|+ +++|.+.+++...
T Consensus 197 ~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 37788888899999999999988877642 22222 4577888888888884 5888888887654
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.57 E-value=1.3e-06 Score=76.17 Aligned_cols=109 Identities=11% Similarity=0.034 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003295 673 VTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGY 752 (833)
Q Consensus 673 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 752 (833)
..+......+.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|+..+++.++.+ +.+...|..++.+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 346667777888888888888888887753 3466778888888888888888888888888754 55677888888888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 003295 753 CKLGDMKEAAKLLNVMAEKGISP-DSITYNVFMD 785 (833)
Q Consensus 753 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~ 785 (833)
...|++++|++.|+++++. .| +...+..|..
T Consensus 92 ~~~~~~~~A~~~~~~al~l--~P~~~~a~~~l~~ 123 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV--DPSNEEAREGVRN 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH--CcCCHHHHHHHHH
Confidence 8888888888888888883 45 4555555543
No 127
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.55 E-value=4.2e-06 Score=80.68 Aligned_cols=126 Identities=10% Similarity=-0.043 Sum_probs=81.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 003295 221 CNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRN 300 (833)
Q Consensus 221 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 300 (833)
+..+...+.+.|++++|...|++.. .|+..+|..+..+|.+.|++++|.+.|++..+... .+...|..+...|.+.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHc
Confidence 3444555666777777777776663 44666777777777777777777777777766532 2456666777777777
Q ss_pred CChhHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003295 301 GRLYEAFHLKEKMVLREVEPSL----------------ITYSILINGLIKLEKFDDANFVLKEMSVR 351 (833)
Q Consensus 301 g~~~~A~~~~~~m~~~~~~p~~----------------~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 351 (833)
|++++|.+.|++..+.. +.+. ..+..+...+.+.|++++|...|++..+.
T Consensus 85 ~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 77777777777776642 1111 45566666666777777777777766655
No 128
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.53 E-value=3.6e-07 Score=82.36 Aligned_cols=97 Identities=12% Similarity=0.012 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003295 707 VACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDG 786 (833)
Q Consensus 707 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 786 (833)
...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|...|++++|++.++++++.. +.+...+..++.+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3445555666666666666666666666543 4455666666666666666666666666666632 2244566666666
Q ss_pred HhcCCCHHHHHHHHHHHHH
Q 003295 787 HCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 787 ~~~~g~~~~A~~~~~~m~~ 805 (833)
|...|++++|.+.|++.++
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666665
No 129
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.52 E-value=3.5e-07 Score=90.34 Aligned_cols=187 Identities=11% Similarity=-0.027 Sum_probs=135.5
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHhhcCCCCC----------------
Q 003295 195 KNLGFGYAIDVFSIFSSKGIFPSLKTCNFL-------LNSLVKANEVQKGIEVFETMCRGVSPD---------------- 251 (833)
Q Consensus 195 ~~~~~~~A~~~f~~~~~~~~~p~~~~~~~l-------l~~~~~~g~~~~A~~~~~~~~~~~~~~---------------- 251 (833)
..++...|.+.|.++.+.++. ....|+.+ ..++.+.++..+++..++..+. ..|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~-l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ-ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT-CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc-CChhhhhhhhccCCcccccc
Confidence 467889999999999888766 68889888 6888888888888888777652 2221
Q ss_pred ------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--hh
Q 003295 252 ------VFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPS--LI 323 (833)
Q Consensus 252 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~ 323 (833)
...+......+...|++++|.++|+.+...+ |+......+...+.+.|++++|+..|+...... .|. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 1223446677888999999999998887654 443366666667888899999999987655431 111 23
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003295 324 TYSILINGLIKLEKFDDANFVLKEMSVRGFVPN--YVVYNTLIDGYCKKGNISEALKIRDDMVSK 386 (833)
Q Consensus 324 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 386 (833)
.+..+...+.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 567777888888888888888888874322143 235556666777888888888888888875
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.51 E-value=2.9e-06 Score=77.85 Aligned_cols=130 Identities=12% Similarity=0.008 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003295 673 VTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGY 752 (833)
Q Consensus 673 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 752 (833)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...|..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345566666777777777777777777652 3356677777777777888888888888777653 44667777788888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHhcCCCHHHHHHHHHHHHH
Q 003295 753 CKLGDMKEAAKLLNVMAEKGISPDSITYNV--FMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 753 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
...|++++|.+.++++.+.. +.+...+.. ++..+...|++++|.+.++....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888888887742 224444433 33336677888888887776543
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.50 E-value=4.2e-07 Score=92.16 Aligned_cols=193 Identities=9% Similarity=-0.023 Sum_probs=121.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 003295 217 SLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHG 296 (833)
Q Consensus 217 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 296 (833)
+...+..+...+.+.|++++|...|++.+...+.+...|..+..+|.+.|++++|...+++..+... .+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 4566777788888888888888888888854556778888888888888888888888888887643 256778888888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHH
Q 003295 297 LCRNGRLYEAFHLKEKMVLREVEPSL-ITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISE 375 (833)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~ 375 (833)
|...|++++|...|++..+.+ |+. ..+...+....+. .++... ..........+......+.. + ..|+.++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence 888888888888888877642 221 1111122211111 111111 11222222334433333322 2 3688888
Q ss_pred HHHHHHHHHhCCCCCCh-hHHHHHHHHHHhc-CChhHHHHHHHHHHH
Q 003295 376 ALKIRDDMVSKGMSPNS-VTFNSLIHGFCKS-GQMDNAENALEEMLS 420 (833)
Q Consensus 376 A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~-g~~~~A~~~l~~~~~ 420 (833)
|.+.+++..+. .|+. .....+...+.+. +.+++|.++|+++.+
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 88888877764 4443 3333343444444 667788888887765
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.47 E-value=3e-06 Score=77.74 Aligned_cols=127 Identities=15% Similarity=0.098 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 003295 220 TCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCR 299 (833)
Q Consensus 220 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 299 (833)
.|..+...+...|++++|...|++.....+.+..++..+..++...|++++|...|++..+... .+...|..+...+.+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHH
Confidence 3445555556666666666666666533344555666666666666666666666666655432 234555555666666
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHH--HHHHHhcCChhHHHHHHHHH
Q 003295 300 NGRLYEAFHLKEKMVLREVEPSLITYSIL--INGLIKLEKFDDANFVLKEM 348 (833)
Q Consensus 300 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~l--i~~~~~~g~~~~A~~~~~~m 348 (833)
.|++++|...|+++.+.. +.+...+..+ +..+.+.|++++|...++..
T Consensus 94 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666655432 1222233222 22244445555555554443
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.47 E-value=8.1e-06 Score=83.29 Aligned_cols=127 Identities=11% Similarity=-0.006 Sum_probs=58.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC---CC--hhhHH
Q 003295 223 FLLNSLVKANEVQKGIEVFETMCRGVSPDV------FLFSTAINAFCKRGRIEDAIGLFTKMEELGIA---PN--VVTYN 291 (833)
Q Consensus 223 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~--~~~~~ 291 (833)
..+..+...|++++|...+++.....+... ..+..+...+...|++++|...|++..+.... +. ..+|+
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 344455566666666666655552111111 12233444445555666666666555432111 11 22455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC-CCCC-----hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 003295 292 NIIHGLCRNGRLYEAFHLKEKMVLRE-VEPS-----LITYSILINGLIKLEKFDDANFVLKEMS 349 (833)
Q Consensus 292 ~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~-----~~t~~~li~~~~~~g~~~~A~~~~~~m~ 349 (833)
.+...|...|++++|...|+++.+.. ..|+ ..+|..+...|.+.|++++|...+++..
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555555555555555555554110 0011 1244444444445555555555444443
No 134
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.46 E-value=2.3e-06 Score=77.00 Aligned_cols=103 Identities=17% Similarity=0.091 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003295 672 SVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGG 751 (833)
Q Consensus 672 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 751 (833)
...+..+...+.+.|++++|...|+++++.. +.+...|..+..+|...|++++|+..|+++.+.. +.+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 3456666777777888888888888877753 3356777777788888888888888888887753 4456777788888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003295 752 YCKLGDMKEAAKLLNVMAEKGISPDSI 778 (833)
Q Consensus 752 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ 778 (833)
|...|++++|+..|+++++. .|+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 88888888888888888773 46553
No 135
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.46 E-value=1.1e-06 Score=84.00 Aligned_cols=84 Identities=8% Similarity=-0.077 Sum_probs=34.6
Q ss_pred cCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhcCChhH
Q 003295 231 ANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEEL----GIA-PNVVTYNNIIHGLCRNGRLYE 305 (833)
Q Consensus 231 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~ 305 (833)
.|++++|.+.++...........++..+...+...|++++|...|++..+. |.. ....+++.+...|...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 444555544333222111123344444555555555555555555544331 000 112334444444555555555
Q ss_pred HHHHHHHHH
Q 003295 306 AFHLKEKMV 314 (833)
Q Consensus 306 A~~~~~~m~ 314 (833)
|.+.+++..
T Consensus 85 A~~~~~~al 93 (203)
T 3gw4_A 85 ARRCFLEER 93 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544443
No 136
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.46 E-value=3e-06 Score=73.16 Aligned_cols=98 Identities=20% Similarity=0.228 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 003295 218 LKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGL 297 (833)
Q Consensus 218 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 297 (833)
..+|..+...+.+.|++++|...|+++....+.+..++..+...+.+.|++++|...|+++.+... .+..++..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHH
Confidence 345555556666666666666666666533344555566666666666666666666666655432 2445555555666
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 003295 298 CRNGRLYEAFHLKEKMVLR 316 (833)
Q Consensus 298 ~~~g~~~~A~~~~~~m~~~ 316 (833)
.+.|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 6666666666666655543
No 137
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.45 E-value=6.3e-05 Score=76.55 Aligned_cols=192 Identities=5% Similarity=-0.030 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHH
Q 003295 619 EEGETLFNEMISKKMELNPVVYNTLIRAYCKIGN--TTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGL-IEDAKCLF 695 (833)
Q Consensus 619 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~ 695 (833)
++++.+++.++...++ +..+|+.-...+.+.|+ +++++++++++.+.. +-|...|+--...+...|. ++++++.+
T Consensus 91 ~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 3444444444444333 44444444444444442 445555555554443 2244444444444444444 34555555
Q ss_pred HHHHHCCCCCChhHHHHHHHHHHhc--------------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc------
Q 003295 696 DEMRKEGLLPNVACYTALIGGYCKL--------------GQMDEAESVLQEMASINIHPNKITYTIMIGGYCKL------ 755 (833)
Q Consensus 696 ~~m~~~g~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~------ 755 (833)
+++++.. +-|...|+.....+.+. +.++++++.+.+.+... +-|...|+-+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcccc
Confidence 5555432 22334444433333332 23455566666555532 44455555444444433
Q ss_pred -----CCHHHHHHHHHHHHHcCCCCCH-HHHHHH---HHHHhcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 003295 756 -----GDMKEAAKLLNVMAEKGISPDS-ITYNVF---MDGHCKGGNVEEAFKVCDRMLSEGLSLD-EITYTTL 818 (833)
Q Consensus 756 -----g~~~~A~~~~~~m~~~g~~p~~-~~~~~l---~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 818 (833)
+.++++++.++++.+ +.||. ..+..+ ..+....|..+++..++.++.+ +.|. ..-|.-+
T Consensus 247 ~~~~~~~l~~el~~~~elle--~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~~y~d~ 315 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQE--LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDL 315 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHh--hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhhHHHHH
Confidence 346677777777776 34543 122111 1222345666777777777776 5555 4444443
No 138
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.45 E-value=1.1e-06 Score=81.99 Aligned_cols=120 Identities=11% Similarity=0.088 Sum_probs=71.7
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHH-HHhcCCh--h
Q 003295 648 CKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGG-YCKLGQM--D 724 (833)
Q Consensus 648 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~--~ 724 (833)
...|++++|...+++..+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34566666666666666543 3355666666666666777777777776666542 2345555556666 5566666 6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 725 EAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 725 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
+|...++++.+.. +.+...+..++..|...|++++|...++++++
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 6777666666543 33455666666666666777777776666666
No 139
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.44 E-value=6.1e-06 Score=71.21 Aligned_cols=112 Identities=18% Similarity=0.196 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003295 673 VTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGY 752 (833)
Q Consensus 673 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 752 (833)
..+..+...+...|++++|.++++++.+.. +.+...+..+...+.+.|++++|...++++.+.. +.+..++..++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344445555555555555555555555432 2234455555555555555555555555555432 33445555555555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003295 753 CKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGH 787 (833)
Q Consensus 753 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 787 (833)
...|++++|...++++.+.. +.+...+..+...+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 56666666666665555532 22334444444443
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.41 E-value=4.2e-06 Score=73.37 Aligned_cols=99 Identities=11% Similarity=0.039 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 003295 217 SLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHG 296 (833)
Q Consensus 217 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 296 (833)
+...|..+...+.+.|++++|...|++...-.+.+..++..+..++...|++++|...|++..+... .+...+..+...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHH
Confidence 3455556666666666666666666666644444556666666666666666666666666665432 244555556666
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 003295 297 LCRNGRLYEAFHLKEKMVLR 316 (833)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~ 316 (833)
+.+.|++++|.+.|++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 66666666666666665543
No 141
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.41 E-value=1.6e-06 Score=82.76 Aligned_cols=154 Identities=10% Similarity=-0.024 Sum_probs=105.9
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhc------CCCCCHHHHHHHHHHHHhcCCh
Q 003295 195 KNLGFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCR------GVSPDVFLFSTAINAFCKRGRI 268 (833)
Q Consensus 195 ~~~~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~ 268 (833)
..|++++|.+.++.+.. .+.....+++.+...+...|++++|...|++... ..+....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 46889999996555443 3334678899999999999999999999999873 2223356788899999999999
Q ss_pred hHHHHHHHHHHHc----CCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHhcCC
Q 003295 269 EDAIGLFTKMEEL----GIAP--NVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREV-EPS----LITYSILINGLIKLEK 337 (833)
Q Consensus 269 ~~A~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~li~~~~~~g~ 337 (833)
++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++.....- ..+ ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999999997653 1111 134577788888888999999988888764210 011 1223455555556666
Q ss_pred hhHHHHHHHHHH
Q 003295 338 FDDANFVLKEMS 349 (833)
Q Consensus 338 ~~~A~~~~~~m~ 349 (833)
+++|...+++..
T Consensus 163 ~~~A~~~~~~al 174 (203)
T 3gw4_A 163 LLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666555554
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.40 E-value=1.1e-06 Score=79.11 Aligned_cols=109 Identities=15% Similarity=0.019 Sum_probs=80.4
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 003295 206 FSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAP 285 (833)
Q Consensus 206 f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 285 (833)
|+++.+..+. +...+..+...+.+.|++++|...|++.+.-.+.+...|..+..+|.+.|++++|...|++.....+.
T Consensus 10 ~~~al~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~- 87 (148)
T 2vgx_A 10 IAMLNEISSD-TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX- 87 (148)
T ss_dssp HHHHTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-
T ss_pred HHHHHcCCHh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-
Confidence 4444443322 45566777778888888888888888887545667778888888888888888888888888776432
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003295 286 NVVTYNNIIHGLCRNGRLYEAFHLKEKMVLR 316 (833)
Q Consensus 286 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (833)
+...|..+...|...|++++|...|++..+.
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5667777888888888888888888887764
No 143
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.40 E-value=5.5e-06 Score=72.19 Aligned_cols=117 Identities=14% Similarity=0.060 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003295 673 VTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGY 752 (833)
Q Consensus 673 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 752 (833)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..++..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 345555556666666666666666666542 2345556666666666666666666666666542 33455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCC
Q 003295 753 CKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGN 792 (833)
Q Consensus 753 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 792 (833)
...|++++|.+.++++.+.. +.+...+..+...+...|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 66666667766666666642 2245556666666655554
No 144
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.40 E-value=1.1e-06 Score=89.14 Aligned_cols=192 Identities=8% Similarity=-0.030 Sum_probs=103.3
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003295 602 IYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHG 681 (833)
Q Consensus 602 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 681 (833)
...+..+...+.+.|++++|+..|++.++..+. +...|..+...|.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344555566666666666666666666665433 56666666777777777777777777766653 3355666667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003295 682 LCNIGLIEDAKCLFDEMRKEGLLPNV-ACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKE 760 (833)
Q Consensus 682 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 760 (833)
+...|++++|...|+++.+. .|+. ..+...+....+. .++.. +........+.+......+... ..|++++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 77777777777777776653 1211 1111111111111 11111 1112222234444444444322 2577777
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 003295 761 AAKLLNVMAEKGISPDS-ITYNVFMDGHCKG-GNVEEAFKVCDRMLS 805 (833)
Q Consensus 761 A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 805 (833)
|++.++++.+ ..|+. .....+...+.+. +.+++|.++|..+.+
T Consensus 154 A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7777777666 34543 3333343334443 556777777776654
No 145
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.40 E-value=2.5e-06 Score=74.50 Aligned_cols=104 Identities=15% Similarity=0.094 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHHH
Q 003295 709 CYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKG--ISPD----SITYNV 782 (833)
Q Consensus 709 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~~ 782 (833)
.+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|++.++++++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 44556666666666666666666666543 3445566666666666666666666666665521 1111 135666
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003295 783 FMDGHCKGGNVEEAFKVCDRMLSEGLSLDEITY 815 (833)
Q Consensus 783 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 815 (833)
++.++...|++++|++.|++.+. ..||....
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS--EFRDPELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHH
Confidence 66666667777777777766665 34454433
No 146
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.40 E-value=4.5e-06 Score=72.76 Aligned_cols=117 Identities=14% Similarity=0.092 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 003295 219 KTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLC 298 (833)
Q Consensus 219 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 298 (833)
..+..+...+...|++++|...|+++....+.+...+..+..++...|++++|.+.+++..+... .+...+..+...+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHHHH
Confidence 34444555555556666666666655533334455555555555666666666666655555422 13445555555555
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 003295 299 RNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEK 337 (833)
Q Consensus 299 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 337 (833)
+.|++++|...+++..+.. +.+...+..+...+.+.|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 5555555555555555432 2233444444444444443
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.39 E-value=2.2e-06 Score=79.88 Aligned_cols=121 Identities=7% Similarity=0.032 Sum_probs=93.1
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHH-HHhcCCh--hHH
Q 003295 195 KNLGFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINA-FCKRGRI--EDA 271 (833)
Q Consensus 195 ~~~~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~A 271 (833)
..|++++|+..|+...+..+. +..+|..+...+...|++++|...|+++..-.+.+...+..+..+ +.+.|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 356677888888877766543 678888888889999999999999998884445677788888888 7788888 999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003295 272 IGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLRE 317 (833)
Q Consensus 272 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 317 (833)
...|+++.+.... +...+..+...|...|++++|...|+++.+..
T Consensus 101 ~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 101 RAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999988876432 56778888888888999999999998888763
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.37 E-value=4.5e-06 Score=73.16 Aligned_cols=96 Identities=15% Similarity=0.075 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003295 673 VTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGY 752 (833)
Q Consensus 673 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 752 (833)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 344444444555555555555555554431 2234444445555555555555555555554432 23344555555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 003295 753 CKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 753 ~~~g~~~~A~~~~~~m~~ 770 (833)
...|++++|.+.++++.+
T Consensus 95 ~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 555555555555555544
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.35 E-value=5.9e-06 Score=86.06 Aligned_cols=95 Identities=11% Similarity=-0.040 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003295 708 ACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGH 787 (833)
Q Consensus 708 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 787 (833)
..|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|+++++.. +.+..++..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 455556666666666666666666666543 3345566666666666666666666666666531 22445566666666
Q ss_pred hcCCCHHHH-HHHHHHHH
Q 003295 788 CKGGNVEEA-FKVCDRML 804 (833)
Q Consensus 788 ~~~g~~~~A-~~~~~~m~ 804 (833)
...|+.++| ...++.|.
T Consensus 275 ~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666655 33444443
No 150
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.33 E-value=0.00011 Score=74.73 Aligned_cols=221 Identities=7% Similarity=-0.036 Sum_probs=147.6
Q ss_pred hccCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 003295 195 KNLGF-GYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANE----------VQKGIEVFETMCRGVSPDVFLFSTAINAFC 263 (833)
Q Consensus 195 ~~~~~-~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 263 (833)
+.|.+ ++|++.++.++..++. +..+||.--..+...+. +++++.+++.++...|-+..+|+--.-++.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 44555 4789999999888776 67788875555544443 678888888888666778888888888888
Q ss_pred hcCC--hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-----
Q 003295 264 KRGR--IEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGR-LYEAFHLKEKMVLREVEPSLITYSILINGLIKL----- 335 (833)
Q Consensus 264 ~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~----- 335 (833)
+.|+ +++++.+++++.+..+. |..+|+--.-.+...|. ++++++.++++.+.. +-|...|+-....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccc
Confidence 8884 78999999999887644 67777777777777787 588999999988865 44667777666555554
Q ss_pred ---------CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc-----------CChHHHHHHHHHHHhCCCCCCh-hH
Q 003295 336 ---------EKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKK-----------GNISEALKIRDDMVSKGMSPNS-VT 394 (833)
Q Consensus 336 ---------g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~-~~ 394 (833)
+.++++++.+.+.....+. |...|+-+-..+.+. +.++++++.++++.+. .||. ..
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~~w~ 274 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPENKWC 274 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred cccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--CcccchH
Confidence 3467777888777765332 566666554444443 3466777777777764 3432 22
Q ss_pred HHHHHH---HHHhcCChhHHHHHHHHHHHC
Q 003295 395 FNSLIH---GFCKSGQMDNAENALEEMLSR 421 (833)
Q Consensus 395 ~~~li~---~~~~~g~~~~A~~~l~~~~~~ 421 (833)
+..++. .....|..+++...+.++.+.
T Consensus 275 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 275 LLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 222211 111244555555666665553
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.33 E-value=8.3e-06 Score=70.90 Aligned_cols=95 Identities=16% Similarity=0.013 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 003295 709 CYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHC 788 (833)
Q Consensus 709 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 788 (833)
.|..+...+.+.|++++|...|++..+.. +.+...|..++.+|.+.|++++|+..++++++.. +.+...|..++.++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34444555555555555555555555432 3345555555555555566666666655555532 123455555555555
Q ss_pred cCCCHHHHHHHHHHHHH
Q 003295 789 KGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 789 ~~g~~~~A~~~~~~m~~ 805 (833)
..|++++|...+++.++
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 66666666665555555
No 152
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.27 E-value=1.4e-05 Score=83.29 Aligned_cols=133 Identities=13% Similarity=0.002 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003295 636 NPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPT--------------SVTYSSLIHGLCNIGLIEDAKCLFDEMRKE 701 (833)
Q Consensus 636 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 701 (833)
+...|..+...+.+.|++++|+..|++..+...... ...|..+..++.+.|++++|+..++++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345566666666777777777777777666532211 467888888888899999999999988886
Q ss_pred CCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 003295 702 GLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEA-AKLLNVMAE 770 (833)
Q Consensus 702 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 770 (833)
. +.+...|..+..+|...|++++|...|+++.+.. +.+...+..+..++.+.|++++| ...+++|..
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3467788888888999999999999999988753 55677888888888888888888 456666653
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.26 E-value=1.5e-05 Score=69.22 Aligned_cols=96 Identities=13% Similarity=0.004 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003295 673 VTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGY 752 (833)
Q Consensus 673 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 752 (833)
..+..+...+.+.|++++|...|++.++.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 456666777778888888888888877753 3456777778888888888888888888887753 44577788888888
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 003295 753 CKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 753 ~~~g~~~~A~~~~~~m~~ 770 (833)
...|++++|++.++++++
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 888888888888888877
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.25 E-value=1e-05 Score=70.54 Aligned_cols=107 Identities=11% Similarity=0.081 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCC----HHHHHH
Q 003295 674 TYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASIN--IHPN----KITYTI 747 (833)
Q Consensus 674 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~~ 747 (833)
.+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|++.+++.++.+ ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45566667777777777777777777642 3345667777777777777777777777766421 1111 235667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003295 748 MIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVF 783 (833)
Q Consensus 748 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 783 (833)
++.++...|++++|++.|++.++ ..||..+...|
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 122 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence 77778888888888888888777 35666554433
No 155
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.24 E-value=6e-06 Score=73.70 Aligned_cols=93 Identities=15% Similarity=0.050 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003295 676 SSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKL 755 (833)
Q Consensus 676 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 755 (833)
..+...+.+.|++++|...|++++... +.+...|..+..+|.+.|++++|...|++..+.+ +.+...|..+..+|...
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 333444444555555555555544432 2233444444444445555555555555544432 23334444444445555
Q ss_pred CCHHHHHHHHHHHHH
Q 003295 756 GDMKEAAKLLNVMAE 770 (833)
Q Consensus 756 g~~~~A~~~~~~m~~ 770 (833)
|++++|.+.|+++++
T Consensus 100 g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 100 GDLDGAESGFYSARA 114 (142)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555554444
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.24 E-value=4.8e-06 Score=74.34 Aligned_cols=98 Identities=14% Similarity=-0.028 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 003295 218 LKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGL 297 (833)
Q Consensus 218 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 297 (833)
...+..+...+.+.|++++|...|++.+...|.+...|..+..+|.+.|++++|...|++.....+. +...|..+..+|
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Confidence 4455566677777888888888888877545667777777888888888888888888887776532 556677777778
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 003295 298 CRNGRLYEAFHLKEKMVLR 316 (833)
Q Consensus 298 ~~~g~~~~A~~~~~~m~~~ 316 (833)
...|++++|.+.|++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888888888888877754
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.21 E-value=2.9e-05 Score=65.99 Aligned_cols=98 Identities=15% Similarity=0.094 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 003295 218 LKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGL 297 (833)
Q Consensus 218 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 297 (833)
...+..+...+...|++++|...|++.....+.+...+..+..++...|++++|...+++..+... .+...+..+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 345556666666777777777777776643445566666677777777777777777777666532 2455666666666
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 003295 298 CRNGRLYEAFHLKEKMVLR 316 (833)
Q Consensus 298 ~~~g~~~~A~~~~~~m~~~ 316 (833)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 6777777777777666654
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.21 E-value=1.5e-05 Score=67.06 Aligned_cols=99 Identities=14% Similarity=0.015 Sum_probs=73.0
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHH
Q 003295 706 NVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISP--DSITYNVF 783 (833)
Q Consensus 706 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l 783 (833)
+...+..+...+...|++++|...+++..+.. +.+...|..++..+...|++++|++.++++++.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 34556667777777888888888888777653 4466777778888888888888888888887742 22 46777788
Q ss_pred HHHHhcC-CCHHHHHHHHHHHHHC
Q 003295 784 MDGHCKG-GNVEEAFKVCDRMLSE 806 (833)
Q Consensus 784 ~~~~~~~-g~~~~A~~~~~~m~~~ 806 (833)
+..+... |++++|.+.+++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 8888888 8888888888877764
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.21 E-value=4.1e-05 Score=65.01 Aligned_cols=92 Identities=17% Similarity=0.107 Sum_probs=37.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003295 677 SLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLG 756 (833)
Q Consensus 677 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 756 (833)
.+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..++.++...|
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHh
Confidence 33334444444444444444444321 1133333444444444444444444444444321 223334444444444444
Q ss_pred CHHHHHHHHHHHHH
Q 003295 757 DMKEAAKLLNVMAE 770 (833)
Q Consensus 757 ~~~~A~~~~~~m~~ 770 (833)
++++|.+.+++..+
T Consensus 87 ~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 87 RFEEAKRTYEEGLK 100 (118)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHH
Confidence 44444444444443
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.16 E-value=2.4e-05 Score=74.38 Aligned_cols=129 Identities=14% Similarity=0.027 Sum_probs=78.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------hhHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003295 675 YSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPN----------------VACYTALIGGYCKLGQMDEAESVLQEMASINI 738 (833)
Q Consensus 675 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 738 (833)
+..+...+...|++++|...|++.++.. +.+ ...|..+..+|.+.|++++|+..+++..+..
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 3344444555555555555555555421 011 2566777778888888888888888887753
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHC
Q 003295 739 HPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAF-KVCDRMLSE 806 (833)
Q Consensus 739 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~ 806 (833)
+.+...|..++.+|...|++++|++.|+++++.. +.+..++..+..++...|+.+++. ..+..|...
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4567778888888888888888888888887742 235667777777777777766666 455555543
No 161
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.16 E-value=1.3e-05 Score=69.72 Aligned_cols=95 Identities=14% Similarity=0.154 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCC----HHHHHHH
Q 003295 675 YSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINI--HPN----KITYTIM 748 (833)
Q Consensus 675 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~~~l 748 (833)
+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++.+... .++ ..+|..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3334444444444444444444444431 22334444444444444444444444444443210 111 3344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 003295 749 IGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 749 i~~~~~~g~~~~A~~~~~~m~~ 770 (833)
+.++...|++++|.+.++++.+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4455555555555555555544
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.15 E-value=3.4e-05 Score=68.01 Aligned_cols=98 Identities=11% Similarity=-0.010 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003295 671 TSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIG 750 (833)
Q Consensus 671 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 750 (833)
+...+..+...+...|++++|...|++.++.. +.+...|..+..++...|++++|...+++..+.. +.+...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 34445555555555555555555555555432 2234445555555555555555555555555432 333445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 003295 751 GYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 751 ~~~~~g~~~~A~~~~~~m~~ 770 (833)
+|...|++++|+..++++++
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555555544
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.15 E-value=1.6e-05 Score=72.84 Aligned_cols=99 Identities=13% Similarity=0.030 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003295 671 TSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIG 750 (833)
Q Consensus 671 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 750 (833)
+...+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45567777777888888888888888887753 3366777778888888888888888888887753 445777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 003295 751 GYCKLGDMKEAAKLLNVMAEK 771 (833)
Q Consensus 751 ~~~~~g~~~~A~~~~~~m~~~ 771 (833)
+|...|++++|++.|+++++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888888773
No 164
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.15 E-value=2.1e-05 Score=68.48 Aligned_cols=111 Identities=16% Similarity=0.122 Sum_probs=92.0
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHH
Q 003295 707 VACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGI--SPD----SITY 780 (833)
Q Consensus 707 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~ 780 (833)
...+..+...+...|++++|...+++..+.. +.+...+..++..+...|++++|...++++.+... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4567788899999999999999999999864 56788999999999999999999999999987421 122 7789
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003295 781 NVFMDGHCKGGNVEEAFKVCDRMLSEGLSLDEITYTTLID 820 (833)
Q Consensus 781 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 820 (833)
..++..+...|++++|.+.++++.+. .|+...+..+-.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 99999999999999999999999984 456555444433
No 165
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.12 E-value=2.2e-05 Score=74.67 Aligned_cols=121 Identities=16% Similarity=-0.024 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCH----------------HHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 003295 219 KTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDV----------------FLFSTAINAFCKRGRIEDAIGLFTKMEELG 282 (833)
Q Consensus 219 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 282 (833)
..+..+...+.+.|++++|...|++.+.-.+.+. ..|..+..+|.+.|++++|...+++..+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3455566667777777777777777763222222 455555555566666666666666655542
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHH
Q 003295 283 IAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDA 341 (833)
Q Consensus 283 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A 341 (833)
. .+...|..+..+|...|++++|.+.|++..+.. +.+...+..+...+...++.+++
T Consensus 119 p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 119 K-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-
T ss_pred c-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 2 234455555555555555555555555555432 22333444444444444443333
No 166
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.12 E-value=1.6e-05 Score=68.47 Aligned_cols=93 Identities=14% Similarity=0.007 Sum_probs=60.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHh
Q 003295 710 YTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISP-DSITYNVFMDGHC 788 (833)
Q Consensus 710 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~ 788 (833)
+..+...+.+.|++++|...+++..+.. +.+...|..+..++...|++++|+..++++++. .| +...+..++.++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3445556666677777777777766643 445666666677777777777777777776663 33 4556666777777
Q ss_pred cCCCHHHHHHHHHHHHH
Q 003295 789 KGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 789 ~~g~~~~A~~~~~~m~~ 805 (833)
..|++++|+..+++.++
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777766665
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.12 E-value=2.4e-05 Score=69.02 Aligned_cols=98 Identities=13% Similarity=-0.028 Sum_probs=63.8
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003295 706 NVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMD 785 (833)
Q Consensus 706 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 785 (833)
+...+..+...+...|++++|...|++..+.. +.+...|..++.++...|++++|+..++++++.. +.+...+..++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 45566666666667777777777777666543 4455666666667777777777777777766642 224566666677
Q ss_pred HHhcCCCHHHHHHHHHHHHH
Q 003295 786 GHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 786 ~~~~~g~~~~A~~~~~~m~~ 805 (833)
++...|++++|+..|++.++
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 77777777777777766665
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=9.1e-05 Score=66.03 Aligned_cols=96 Identities=14% Similarity=-0.005 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 003295 672 SVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPN----VACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTI 747 (833)
Q Consensus 672 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 747 (833)
...+..+...+...|++++|...|++..+. .|+ ...|..+...|...|++++|...+++..+.. +.+...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 334444444455555555555555555442 233 3444444445555555555555555544431 223444445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 003295 748 MIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 748 li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
+..++...|++++|.+.++++++
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555544
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=0.00012 Score=79.31 Aligned_cols=121 Identities=12% Similarity=0.051 Sum_probs=58.5
Q ss_pred hcCCHHHHHHHHHHHHHC----CCCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHHhC--CC--CC-CHHHHHHHHHHHH
Q 003295 684 NIGLIEDAKCLFDEMRKE----GLLPN-VACYTALIGGYCKLGQMDEAESVLQEMASI--NI--HP-NKITYTIMIGGYC 753 (833)
Q Consensus 684 ~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~--~p-~~~~~~~li~~~~ 753 (833)
..|+.++|..++.+.... +..+. ..++..+...|...|++++|..+++++... +. .+ ...+|..++..|.
T Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
T 4b4t_Q 107 VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH 186 (434)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 345555555555554431 11121 234455555566666666666665555421 11 11 1234555556666
Q ss_pred hcCCHHHHHHHHHHHHHc--CCC-C-C--HHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003295 754 KLGDMKEAAKLLNVMAEK--GIS-P-D--SITYNVFMDGHCKGGNVEEAFKVCDRML 804 (833)
Q Consensus 754 ~~g~~~~A~~~~~~m~~~--g~~-p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 804 (833)
..|++++|..++++.... .+. | . ...+..++..+...|++++|...|.+..
T Consensus 187 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 187 KLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 666666666666555431 111 1 1 1344455555555666666655555544
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.09 E-value=2.7e-05 Score=65.55 Aligned_cols=57 Identities=18% Similarity=0.079 Sum_probs=21.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 003295 257 TAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMV 314 (833)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 314 (833)
.+...+.+.|++++|...|++..+... .+...|..+...+.+.|++++|.+.+++..
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVI 67 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 333334444444444444444333221 122333333333334444444444444333
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=0.0001 Score=65.71 Aligned_cols=112 Identities=16% Similarity=0.060 Sum_probs=93.9
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003295 705 PNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPN----KITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITY 780 (833)
Q Consensus 705 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 780 (833)
.+...+..+...+...|++++|...|++..+. .|+ ...|..+..+|...|++++|+..++++++.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 35677888899999999999999999999985 566 6788999999999999999999999999852 3367889
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHh
Q 003295 781 NVFMDGHCKGGNVEEAFKVCDRMLSEGLSLD-EITYTTLIDG 821 (833)
Q Consensus 781 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~ 821 (833)
..++.++...|++++|.+.+++.++ +.|+ ...+..+...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVS--LEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHH
Confidence 9999999999999999999999998 4565 4444444433
No 172
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.07 E-value=3.7e-05 Score=70.40 Aligned_cols=98 Identities=12% Similarity=0.024 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 003295 218 LKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGL 297 (833)
Q Consensus 218 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 297 (833)
...|..+...+.+.|++++|+..|++.+.-.+.+...|..+..+|.+.|++++|+..|++..+.... +...|..+...|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 3455556666666666666666666666434455666666666666666666666666666665322 455666666666
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 003295 298 CRNGRLYEAFHLKEKMVLR 316 (833)
Q Consensus 298 ~~~g~~~~A~~~~~~m~~~ 316 (833)
.+.|++++|...|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 6666666666666666653
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.04 E-value=2.5e-05 Score=67.33 Aligned_cols=93 Identities=11% Similarity=0.012 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 003295 222 NFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNG 301 (833)
Q Consensus 222 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 301 (833)
..+...+.+.|++++|+..|++++...|.+...|..+..++.+.|++++|+..|++..+..+. +...+..+...|.+.|
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 334445556666666666666666444455666666666666666666666666666654322 4455556666666666
Q ss_pred ChhHHHHHHHHHHh
Q 003295 302 RLYEAFHLKEKMVL 315 (833)
Q Consensus 302 ~~~~A~~~~~~m~~ 315 (833)
++++|+..+++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666666554
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.98 E-value=4.1e-05 Score=69.46 Aligned_cols=132 Identities=14% Similarity=0.116 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----hhHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHH
Q 003295 674 TYSSLIHGLCNIGLIEDAKCLFDEMRKEGL-LPN----VACYTALIGGYCKLGQMDEAESVLQEMASI----NIHP-NKI 743 (833)
Q Consensus 674 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~ 743 (833)
++..+...+...|++++|...+++..+..- .++ ..++..+...+...|++++|.+.+++..+. +-++ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 455566666667777777777766654210 011 135666777777888888888888776642 1111 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 744 TYTIMIGGYCKLGDMKEAAKLLNVMAEK----GISP-DSITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 744 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
++..+...+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|.+.+++.++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6777888888888888888888887652 1111 135677888888889999999998888775
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.95 E-value=0.00011 Score=63.86 Aligned_cols=91 Identities=18% Similarity=0.069 Sum_probs=45.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCh---hHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHH
Q 003295 678 LIHGLCNIGLIEDAKCLFDEMRKEGLLPNV---ACYTALIGGYCKLGQMDEAESVLQEMASINIHPN---KITYTIMIGG 751 (833)
Q Consensus 678 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~ 751 (833)
+...+...|++++|...|+++.+.. +.+. ..+..+..++.+.|++++|...++++.+.. +.+ ...+..++.+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 3444555555555555555555431 1111 244445555555555555555555555432 222 3444555555
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 003295 752 YCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 752 ~~~~g~~~~A~~~~~~m~~ 770 (833)
+...|++++|...++++++
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555554
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.95 E-value=0.00023 Score=76.97 Aligned_cols=161 Identities=9% Similarity=0.014 Sum_probs=73.9
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC
Q 003295 539 ILGCCKDGKPEEGFKLKEDMIKRGIQPDN----------------YTYNLLLHGLCSLGKMEEAIELWEECKRTVFG-PD 601 (833)
Q Consensus 539 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 601 (833)
...+.+.|++++|.+.|..+++....... ..+..++..|...|++++|.+.+..+...-.. ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34456677777777777777765432111 12455566666666666666666554432100 11
Q ss_pred H----hhHHHHHHHHHccCCHHHHHHHHHHHHHC----CCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhC--CC--
Q 003295 602 I----YTYGVMIDGFCKADKIEEGETLFNEMISK----KMEL-NPVVYNTLIRAYCKIGNTTAAFRLSNDMKSR--GI-- 668 (833)
Q Consensus 602 ~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~-- 668 (833)
. .+.+.+...+...|+.++|..++.+.... +..+ -..++..+...|...|++++|..++++.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 11122222233345555555555544321 1111 1234444455555555555555555444321 00
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003295 669 LP-TSVTYSSLIHGLCNIGLIEDAKCLFDEMR 699 (833)
Q Consensus 669 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 699 (833)
.+ ...++..++..|...|++++|..++++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 00 12234444444555555555555554443
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.93 E-value=5.1e-05 Score=82.66 Aligned_cols=138 Identities=13% Similarity=0.045 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 003295 636 NPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIG 715 (833)
Q Consensus 636 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 715 (833)
....|..+...+.+.|++++|+..|++.++....... + .-+... +.. .-....|..+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~----~~~----~~~~~~~~nla~ 325 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--L-----------SEKESK----ASE----SFLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--C-----------CHHHHH----HHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--C-----------ChHHHH----HHH----HHHHHHHHHHHH
Confidence 3455666666777777777777777776654211110 0 000000 000 000234444555
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCCHH
Q 003295 716 GYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISP-DSITYNVFMDGHCKGGNVE 794 (833)
Q Consensus 716 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~ 794 (833)
+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|+++++ +.| +..++..+..++.+.|+.+
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555432 33444555555555555555555555555554 223 2334444555555555544
Q ss_pred HHH
Q 003295 795 EAF 797 (833)
Q Consensus 795 ~A~ 797 (833)
+|.
T Consensus 403 ~a~ 405 (457)
T 1kt0_A 403 ERD 405 (457)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.93 E-value=7.1e-05 Score=68.30 Aligned_cols=98 Identities=14% Similarity=0.105 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CC----------CCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003295 672 SVTYSSLIHGLCNIGLIEDAKCLFDEMRKE-------GL----------LPNVACYTALIGGYCKLGQMDEAESVLQEMA 734 (833)
Q Consensus 672 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 734 (833)
...+......+.+.|++++|+..|.+.++. +- +.+...|..+..+|.+.|++++|+..+++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345566666777777777777777776653 00 0112344455555555555555555555555
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 735 SINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 735 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
+.. +.+...|..++.+|...|++++|+..|+++++
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 432 33444555555555555555555555555555
No 179
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.91 E-value=0.00034 Score=77.96 Aligned_cols=174 Identities=9% Similarity=-0.012 Sum_probs=128.5
Q ss_pred CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003295 616 DKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGN----------TTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNI 685 (833)
Q Consensus 616 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 685 (833)
...++|++.++++++..+. +..+|+.--.++.+.|+ ++++++.++++.+.. +-+..+|.--...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3346778888888877665 67777777777766666 788888888888765 33667777777777777
Q ss_pred C--CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-------
Q 003295 686 G--LIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLG-QMDEAESVLQEMASINIHPNKITYTIMIGGYCKL------- 755 (833)
Q Consensus 686 g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~------- 755 (833)
| +++++++.++++.+.. +-|...|+.-...+.+.| ..+++++.++++++.. +-|...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 7 6688888888888864 346677777777777777 7888888888888764 55777887777776653
Q ss_pred -------CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCCHHH
Q 003295 756 -------GDMKEAAKLLNVMAEKGISP-DSITYNVFMDGHCKGGNVEE 795 (833)
Q Consensus 756 -------g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 795 (833)
+.+++|++++++++.. .| |...|..+...+.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCccc
Confidence 5578888888888884 34 66788888888887777444
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.90 E-value=7.8e-05 Score=81.56 Aligned_cols=115 Identities=7% Similarity=-0.063 Sum_probs=90.4
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 003295 195 KNLGFGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGL 274 (833)
Q Consensus 195 ~~~~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 274 (833)
+.|++++|++.|++..+..+. +..+|+.+..++.+.|++++|+..|++.++-.+.+..+|..+..+|.+.|++++|.+.
T Consensus 18 ~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~ 96 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRD 96 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 568889999999988876544 6888999999999999999999999999866667788899999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHH--HHhcCChhHHHHHHH
Q 003295 275 FTKMEELGIAPNVVTYNNIIHG--LCRNGRLYEAFHLKE 311 (833)
Q Consensus 275 ~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 311 (833)
|++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 97 ~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 97 YETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9998886432 44556666555 778899999999887
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.90 E-value=5.6e-05 Score=68.50 Aligned_cols=132 Identities=15% Similarity=0.087 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-Chh
Q 003295 639 VYNTLIRAYCKIGNTTAAFRLSNDMKSRGIL-PT----SVTYSSLIHGLCNIGLIEDAKCLFDEMRKE----GLLP-NVA 708 (833)
Q Consensus 639 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~ 708 (833)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4445555555556666666655555432100 11 135666677777778888888877776642 1111 134
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 709 CYTALIGGYCKLGQMDEAESVLQEMASI----NIHP-NKITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 709 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
.+..+...+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5667777888888888888888877642 1111 134677788888899999999999888775
No 182
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.87 E-value=0.00033 Score=61.78 Aligned_cols=110 Identities=12% Similarity=-0.023 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 003295 687 LIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCK----LGDMKEAA 762 (833)
Q Consensus 687 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~ 762 (833)
+.++|.++|++..+.| .|+.. |...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4556666666666654 22222 4444545555666666666666543 45555666666655 56666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHCC
Q 003295 763 KLLNVMAEKGISPDSITYNVFMDGHCK----GGNVEEAFKVCDRMLSEG 807 (833)
Q Consensus 763 ~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 807 (833)
++|++..+.| +...+..|...|.. .++.++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666666653 45556666666665 566666666666666654
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.86 E-value=0.00041 Score=60.05 Aligned_cols=92 Identities=10% Similarity=0.039 Sum_probs=59.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 003295 712 ALIGGYCKLGQMDEAESVLQEMASINIHPNK---ITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPD---SITYNVFMD 785 (833)
Q Consensus 712 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~ 785 (833)
.+...+...|++++|...|+++.+.. +.+. ..+..++.++...|++++|+..++++++.. +.+ ..++..++.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 44556667777777777777776532 2222 366667777777777777777777776642 112 455666777
Q ss_pred HHhcCCCHHHHHHHHHHHHH
Q 003295 786 GHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 786 ~~~~~g~~~~A~~~~~~m~~ 805 (833)
++...|++++|...|+++++
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777766
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.84 E-value=0.00014 Score=66.37 Aligned_cols=99 Identities=16% Similarity=0.039 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhC--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003295 637 PVVYNTLIRAYCKIGNTTAAFRLSNDMKSR--------G---------ILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMR 699 (833)
Q Consensus 637 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~---------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 699 (833)
...+......+.+.|++++|+..|++.+.. . -+.+...|..+..++.+.|++++|+..+++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445556666666667777777766666553 0 01122455666666666677777777776666
Q ss_pred HCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003295 700 KEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASI 736 (833)
Q Consensus 700 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 736 (833)
+.. +.+...|..+..+|...|++++|...|++..+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 642 334556666666666677777777776666653
No 185
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.83 E-value=0.00017 Score=64.03 Aligned_cols=103 Identities=13% Similarity=0.043 Sum_probs=69.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC
Q 003295 712 ALIGGYCKLGQMDEAESVLQEMASINIHPN-------------KITYTIMIGGYCKLGDMKEAAKLLNVMAEK-----GI 773 (833)
Q Consensus 712 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~ 773 (833)
.....+.+.|++++|+..|++.++. .|+ ...|..+..++.+.|++++|+..+++.++. .+
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444445555555555555555542 222 237888888888888888888888888873 11
Q ss_pred CCCH-HHH----HHHHHHHhcCCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 003295 774 SPDS-ITY----NVFMDGHCKGGNVEEAFKVCDRMLS-----EGLSLDEITYT 816 (833)
Q Consensus 774 ~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 816 (833)
.|+. ..| ...+.++...|++++|+..|++.++ .|+.+......
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~ 146 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 6754 677 8889999999999999999998876 35555544433
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.83 E-value=3.6e-05 Score=65.80 Aligned_cols=84 Identities=11% Similarity=0.072 Sum_probs=38.5
Q ss_pred CChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHH
Q 003295 721 GQMDEAESVLQEMASIN--IHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFK 798 (833)
Q Consensus 721 g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 798 (833)
|++++|+..|++..+.+ -+.+...|..++.+|...|++++|++.++++++.. +-+..++..++.++...|++++|+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 44555555555554431 01123344455555555555555555555555431 1234445555555555555555555
Q ss_pred HHHHHHH
Q 003295 799 VCDRMLS 805 (833)
Q Consensus 799 ~~~~m~~ 805 (833)
.+++.+.
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.81 E-value=0.00016 Score=76.07 Aligned_cols=90 Identities=17% Similarity=0.121 Sum_probs=71.4
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 003295 706 NVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISP-DSITYNVFM 784 (833)
Q Consensus 706 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~ 784 (833)
+...|..+..+|.+.|++++|++.++++.+.. +.+...|..+..+|...|++++|++.++++++. .| +...+..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~ 348 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 45677888888888899999999999888754 456778888888899999999999999998884 34 567777777
Q ss_pred HHHhcCCCHHHHHH
Q 003295 785 DGHCKGGNVEEAFK 798 (833)
Q Consensus 785 ~~~~~~g~~~~A~~ 798 (833)
..+...++.+++.+
T Consensus 349 ~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 349 KVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777776654
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.80 E-value=4.1e-05 Score=83.77 Aligned_cols=118 Identities=14% Similarity=0.102 Sum_probs=66.3
Q ss_pred HHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHH
Q 003295 227 SLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEA 306 (833)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 306 (833)
.+.+.|++++|...|++.++-.+.+..+|..+..+|.+.|++++|.+.|++..+.... +..+|..+..+|.+.|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 3455666777777776666434455666666666666666666666666666665322 455666666666666666666
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHH--HHhcCChhHHHHHHH
Q 003295 307 FHLKEKMVLREVEPSLITYSILING--LIKLEKFDDANFVLK 346 (833)
Q Consensus 307 ~~~~~~m~~~~~~p~~~t~~~li~~--~~~~g~~~~A~~~~~ 346 (833)
.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666666542 1223334444333 555556666655555
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.79 E-value=3.6e-05 Score=65.80 Aligned_cols=86 Identities=20% Similarity=0.245 Sum_probs=59.8
Q ss_pred cCCHHHHHHHHHHHHHCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003295 685 IGLIEDAKCLFDEMRKEG--LLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAA 762 (833)
Q Consensus 685 ~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 762 (833)
.|++++|+..|++.++.+ -+.+...+..+..+|...|++++|...|++..+.. +.+...+..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 567777777777777642 12244567777777888888888888888877753 445677777888888888888888
Q ss_pred HHHHHHHHc
Q 003295 763 KLLNVMAEK 771 (833)
Q Consensus 763 ~~~~~m~~~ 771 (833)
..+++.++.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888887774
No 190
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.78 E-value=0.00019 Score=78.17 Aligned_cols=97 Identities=11% Similarity=-0.035 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCC---------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 003295 218 LKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPD---------------VFLFSTAINAFCKRGRIEDAIGLFTKMEELG 282 (833)
Q Consensus 218 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 282 (833)
...|..+...+.+.|++++|...|++++.-.+.+ ..+|..+..+|.+.|++++|+..|++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3455566666667777777777777666211222 2344444444444444444444444444432
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003295 283 IAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVL 315 (833)
Q Consensus 283 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (833)
.. +...|..+..+|...|++++|+..|+++.+
T Consensus 348 p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 348 SA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred Cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 21 333444444444444444444444444443
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.78 E-value=4.7e-05 Score=79.22 Aligned_cols=148 Identities=11% Similarity=0.022 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 003295 636 NPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIG 715 (833)
Q Consensus 636 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 715 (833)
....+..+...+.+.|++++|...|++.... .|+... +...|+.+++...+. ...|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 3556777777788888888888888887765 233321 122333333332221 136788889
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH-hcCCCH
Q 003295 716 GYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISP-DSITYNVFMDGH-CKGGNV 793 (833)
Q Consensus 716 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~-~~~g~~ 793 (833)
+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|+++++ +.| +...+..|.... ...+..
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998854 55788999999999999999999999999887 445 445566665553 345677
Q ss_pred HHHHHHHHHHHH
Q 003295 794 EEAFKVCDRMLS 805 (833)
Q Consensus 794 ~~A~~~~~~m~~ 805 (833)
+++...|.+|..
T Consensus 316 ~~a~~~~~~~l~ 327 (338)
T 2if4_A 316 QKQKEMYKGIFK 327 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHHhhC
Confidence 888888888876
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.74 E-value=0.00027 Score=62.85 Aligned_cols=94 Identities=15% Similarity=0.055 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------------hhHHHHHHHHHHhcCChhHHHHHHHHHHhC-----
Q 003295 675 YSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPN-------------VACYTALIGGYCKLGQMDEAESVLQEMASI----- 736 (833)
Q Consensus 675 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 736 (833)
+......+.+.|++++|+..|++.++. .|+ ...|..+..++.+.|++++|+..+++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 444555566677777777777776663 233 237888888888899999998888888874
Q ss_pred CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 737 NIHPN-KITY----TIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 737 g~~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
.+.|+ ...| .....++...|++++|+..|++.++
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 11454 5578 8999999999999999999999987
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.73 E-value=0.00016 Score=76.07 Aligned_cols=138 Identities=12% Similarity=0.003 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 003295 219 KTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLC 298 (833)
Q Consensus 219 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 298 (833)
..|..+...+.+.|++++|+..|++.++-.+... ..-. .++..+.. ..+...|+.+...|.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----------~~~~-------~~~~~~~~-~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----------AAAE-------DADGAKLQ-PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------HHSC-------HHHHGGGH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----------cccC-------hHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3466666777777777777777777663000000 0000 00000000 012344455555555
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHH
Q 003295 299 RNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEAL 377 (833)
Q Consensus 299 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~ 377 (833)
+.|++++|++.+++..+.. +.+...|..+..+|.+.|++++|...|++..+.... +...+..+...+.+.++.+++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555432 223445555555555555555555555555544211 3344444444555555554443
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.68 E-value=0.0009 Score=74.49 Aligned_cols=170 Identities=8% Similarity=0.035 Sum_probs=84.5
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC--Ch
Q 003295 236 KGIEVFETMCRGVSPDVFLFSTAINAFCKRGR----------IEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNG--RL 303 (833)
Q Consensus 236 ~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~ 303 (833)
+|++.+++++.-.|.+..+|+.--.++...|+ ++++++.++++.+..+. +..+|+.-.-.+.+.| ++
T Consensus 47 eal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 47 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccccH
Confidence 44555555443333344444444444444444 45555555555544322 3344444444444444 33
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc------------
Q 003295 304 YEAFHLKEKMVLREVEPSLITYSILINGLIKLE-KFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKK------------ 370 (833)
Q Consensus 304 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~------------ 370 (833)
+++++.++++.+.. +.|..+|+--.-.+.+.| .++++.+.++++.+..+. |..+|+-....+.+.
T Consensus 126 ~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~ 203 (567)
T 1dce_A 126 ARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred HHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccc
Confidence 55555555555442 234444444444444444 455555555555544322 344444444443332
Q ss_pred --CChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChh
Q 003295 371 --GNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMD 409 (833)
Q Consensus 371 --g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 409 (833)
+.+++|++.+++.....+. |...|+.+...+.+.++.+
T Consensus 204 ~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 204 PENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCS
T ss_pred cHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCcc
Confidence 4567788888777765433 6667777666666666533
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.63 E-value=0.0012 Score=57.98 Aligned_cols=111 Identities=10% Similarity=-0.066 Sum_probs=84.2
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh----cCChhHH
Q 003295 651 GNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCK----LGQMDEA 726 (833)
Q Consensus 651 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A 726 (833)
+++++|++.|++..+.| .++.. +...|...+.+++|.++|++..+.| +...+..|...|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45677888888887776 23333 5666666677788888888888764 56677777777777 7788888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 003295 727 ESVLQEMASINIHPNKITYTIMIGGYCK----LGDMKEAAKLLNVMAEKG 772 (833)
Q Consensus 727 ~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 772 (833)
.+.|++..+.| +...+..|...|.. .+++++|.+++++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888888765 56777788888887 788888888888888876
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.61 E-value=3.8e-05 Score=64.65 Aligned_cols=92 Identities=14% Similarity=0.075 Sum_probs=62.2
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------HH
Q 003295 706 NVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPD-------SI 778 (833)
Q Consensus 706 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~ 778 (833)
+...+..+...+.+.|++++|.+.+++..+.. +.+...|..+..++...|++++|++.++++++. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 34556667777777777777777777777653 446677777777777788888888888777763 443 45
Q ss_pred HHHHHHHHHhcCCCHHHHHHHH
Q 003295 779 TYNVFMDGHCKGGNVEEAFKVC 800 (833)
Q Consensus 779 ~~~~l~~~~~~~g~~~~A~~~~ 800 (833)
.+..+..++...|+.++|.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHH
Confidence 5666666666666665555444
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.55 E-value=0.00017 Score=75.00 Aligned_cols=150 Identities=11% Similarity=0.027 Sum_probs=86.5
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003295 601 DIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIH 680 (833)
Q Consensus 601 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 680 (833)
....+..+...+.+.|++++|...|++.++.. |+... +...|+.+++...+. ...|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 35567778888999999999999999988763 23221 222334444433221 136778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHH
Q 003295 681 GLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGG-YCKLGDMK 759 (833)
Q Consensus 681 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~ 759 (833)
++.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+++.+.. +.+...+..+... ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998853 3467788889999999999999999999988743 3345566666555 34456677
Q ss_pred HHHHHHHHHHHc
Q 003295 760 EAAKLLNVMAEK 771 (833)
Q Consensus 760 ~A~~~~~~m~~~ 771 (833)
++...|.+|...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 888888888763
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.53 E-value=0.00034 Score=75.96 Aligned_cols=98 Identities=8% Similarity=-0.037 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHh-----CC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCC-
Q 003295 708 ACYTALIGGYCKLGQMDEAESVLQEMAS-----IN-IHPN-KITYTIMIGGYCKLGDMKEAAKLLNVMAE---KGISPD- 776 (833)
Q Consensus 708 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~- 776 (833)
.+++.|...|...|++++|+.++++..+ .| -.|+ ..+++.|+..|...|++++|..+++++++ .-+.||
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3445555555555555555555555432 11 0111 23455555566666666666665555543 111122
Q ss_pred ---HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 777 ---SITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 777 ---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
..+...+..++...|++++|...+.++++
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13344555555556666666666666654
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.52 E-value=0.00013 Score=64.63 Aligned_cols=91 Identities=18% Similarity=0.163 Sum_probs=58.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChh----------HHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003295 683 CNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMD----------EAESVLQEMASINIHPNKITYTIMIGGY 752 (833)
Q Consensus 683 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~----------~A~~~~~~m~~~g~~p~~~~~~~li~~~ 752 (833)
.+.+.+++|.+.+++.++.. +.+...|..+..++...|+++ +|+..|++.++.+ +.+..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 45566777777777777753 336677777777777766543 6777777776643 33456677777777
Q ss_pred HhcC-----------CHHHHHHHHHHHHHcCCCCCH
Q 003295 753 CKLG-----------DMKEAAKLLNVMAEKGISPDS 777 (833)
Q Consensus 753 ~~~g-----------~~~~A~~~~~~m~~~g~~p~~ 777 (833)
...| ++++|++.|+++++ +.|+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~ 124 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDN 124 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCC
Confidence 6653 66666666666666 44553
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.48 E-value=0.00071 Score=57.25 Aligned_cols=79 Identities=15% Similarity=0.104 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003295 690 DAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMA 769 (833)
Q Consensus 690 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 769 (833)
+|...|++..+.. +.+...+..+...|...|++++|...+++..+.. +.+...|..+..+|...|++++|...+++++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555555432 2244455555555555555555555555555432 3344455555555555555555555555554
Q ss_pred H
Q 003295 770 E 770 (833)
Q Consensus 770 ~ 770 (833)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.48 E-value=0.00028 Score=62.51 Aligned_cols=84 Identities=12% Similarity=0.048 Sum_probs=43.9
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHCCCCC-ChhHHHHHHHHH
Q 003295 649 KIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLI----------EDAKCLFDEMRKEGLLP-NVACYTALIGGY 717 (833)
Q Consensus 649 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~g~~p-~~~~~~~li~~~ 717 (833)
+.+.+++|.+.+++..+.. +.+...|..+..++...+++ ++|+..|++.++. .| +...|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHH
Confidence 3445555555555555543 23555555555555555443 3555555555553 23 334555555555
Q ss_pred HhcC-----------ChhHHHHHHHHHHh
Q 003295 718 CKLG-----------QMDEAESVLQEMAS 735 (833)
Q Consensus 718 ~~~g-----------~~~~A~~~~~~m~~ 735 (833)
...| ++++|++.|+++++
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 5442 55556665555555
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.44 E-value=0.00043 Score=75.15 Aligned_cols=98 Identities=12% Similarity=-0.004 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHh-----CCC-C
Q 003295 673 VTYSSLIHGLCNIGLIEDAKCLFDEMRKE-----G-LLP-NVACYTALIGGYCKLGQMDEAESVLQEMAS-----INI-H 739 (833)
Q Consensus 673 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~ 739 (833)
.+++.|...|...|++++|..++++.++- | -.| ...+++.|...|...|++++|+.++++..+ .|- .
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 35666666666677777776666665531 2 112 234566777777777777777777776653 221 1
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 740 PN-KITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 740 p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
|+ ..+...+..++...|.+++|..++.++.+
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 22445566666677777777777777765
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.00012 Score=61.38 Aligned_cols=92 Identities=12% Similarity=0.056 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-------hhh
Q 003295 217 SLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPN-------VVT 289 (833)
Q Consensus 217 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~~ 289 (833)
+...|..+...+.+.|++++|...|++.+.-.+.+...|..+..++.+.|++++|.+.|++..+.. |+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHH
Confidence 345566667777777777777777777764445566677777777777777777777777777643 33 334
Q ss_pred HHHHHHHHHhcCChhHHHHHH
Q 003295 290 YNNIIHGLCRNGRLYEAFHLK 310 (833)
Q Consensus 290 ~~~li~~~~~~g~~~~A~~~~ 310 (833)
+..+..++...|+.++|.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHH
Confidence 444455555555555554433
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.34 E-value=0.0008 Score=56.92 Aligned_cols=80 Identities=5% Similarity=-0.068 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003295 201 YAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEE 280 (833)
Q Consensus 201 ~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (833)
.|++.|+...+..+. +...|..+...+.+.|++++|...|++.+.-.+.+..+|..+..+|.+.|++++|...|++..+
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355666666665543 5667777777777777777777777777744455666777777777777777777777777665
Q ss_pred c
Q 003295 281 L 281 (833)
Q Consensus 281 ~ 281 (833)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 3
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.33 E-value=0.0016 Score=52.02 Aligned_cols=80 Identities=21% Similarity=0.237 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003295 708 ACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGH 787 (833)
Q Consensus 708 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 787 (833)
..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 445555555666666666666666665532 3345556666666666666666666666666532 22445555555554
Q ss_pred hc
Q 003295 788 CK 789 (833)
Q Consensus 788 ~~ 789 (833)
.+
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.30 E-value=0.0015 Score=52.20 Aligned_cols=79 Identities=20% Similarity=0.200 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 003295 219 KTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLC 298 (833)
Q Consensus 219 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 298 (833)
..|..+...+.+.|++++|...|++.....+.+..++..+..++.+.|++++|...|++..+..+. +...+..+...+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~ 88 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence 345555555566666666666666665333445555555666666666666666666665554321 3344444444443
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.08 E-value=0.0078 Score=61.35 Aligned_cols=85 Identities=15% Similarity=0.067 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003295 739 HPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSLDEITYTTL 818 (833)
Q Consensus 739 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 818 (833)
+.+..+|..+...+...|++++|...++++++.+ |+...|..++..+.-.|++++|.+.+++... +.|...+|...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHHH
Confidence 5667788888777777889999999999888854 7877788888888888999999988888888 67777777655
Q ss_pred HHhhccCCC
Q 003295 819 IDGWQSSTI 827 (833)
Q Consensus 819 ~~~~~~~~~ 827 (833)
-...-++++
T Consensus 350 ~~l~F~sn~ 358 (372)
T 3ly7_A 350 ENGIFQTSV 358 (372)
T ss_dssp HHSSSCCCH
T ss_pred hCceeecch
Confidence 554445543
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.05 E-value=0.0016 Score=53.37 Aligned_cols=63 Identities=17% Similarity=0.057 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 707 VACYTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 707 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
...+..+...|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|++.+++.++
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444455555555555555555555555432 22344455555555555555555555555443
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.89 E-value=0.0044 Score=50.72 Aligned_cols=65 Identities=20% Similarity=0.137 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003295 250 PDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVL 315 (833)
Q Consensus 250 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (833)
.+...+..+..+|.+.|++++|...|++..+..+. +...|..+...|.+.|++++|.+.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555555666666666666666666666554322 344555566666666666666666655543
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.78 E-value=0.019 Score=58.59 Aligned_cols=64 Identities=13% Similarity=-0.028 Sum_probs=33.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003295 286 NVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVR 351 (833)
Q Consensus 286 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 351 (833)
+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|+.++|.+.|++....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 44445444444444455555555555555542 44444444455555555555555555555544
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.59 E-value=0.011 Score=51.77 Aligned_cols=80 Identities=10% Similarity=0.074 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC---ChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 003295 689 EDAKCLFDEMRKEGLLPNVACYTALIGGYCKLG---QMDEAESVLQEMASINIHP--NKITYTIMIGGYCKLGDMKEAAK 763 (833)
Q Consensus 689 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~ 763 (833)
..+.+-|.+..+.| .++..+...+..++++.+ +.++++.++++..+.+ .| +...+..|.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 34444444444433 244444444555555544 3345555555555432 12 23344444445555555555555
Q ss_pred HHHHHHH
Q 003295 764 LLNVMAE 770 (833)
Q Consensus 764 ~~~~m~~ 770 (833)
+++.+++
T Consensus 93 y~~~lL~ 99 (152)
T 1pc2_A 93 YVRGLLQ 99 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555555
No 212
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.46 E-value=4e-06 Score=86.32 Aligned_cols=279 Identities=15% Similarity=0.147 Sum_probs=169.8
Q ss_pred CChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 003295 232 NEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKE 311 (833)
Q Consensus 232 g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (833)
+++++|.++-++. .....|+.+.++..+.|++.+|.+.|-+. -|+..|..+|.+..+.|.+++-...+.
T Consensus 39 ~~ldRa~eyA~~~-----n~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~ 107 (624)
T 3lvg_A 39 GNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 107 (624)
T ss_dssp CCSTTTTTSSSSC-----CCCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHH
T ss_pred cccHHHHHHHHHh-----CCccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4455554443332 23445778999999999999888766433 377788899999999999999988876
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC
Q 003295 312 KMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPN 391 (833)
Q Consensus 312 ~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 391 (833)
-.++. ..+...=+.|+-+|++.+++.+-.+.+. .||+.-...+.+-+...|.++.|.-+|..+.
T Consensus 108 MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is------- 171 (624)
T 3lvg_A 108 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------- 171 (624)
T ss_dssp TTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC-------
T ss_pred HHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc-------
Confidence 65554 3455555788889999888766433321 4677777788888888888888877775432
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 003295 392 SVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLLTLLVSG 471 (833)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 471 (833)
-|.-|...+.+.|++..|.+.-++. -++.+|-.+-.+|...+++.-|.-.
T Consensus 172 --N~akLAstLV~L~~yq~AVdaArKA------ns~ktWKeV~~ACvd~~EfrLAqic---------------------- 221 (624)
T 3lvg_A 172 --NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMC---------------------- 221 (624)
T ss_dssp --CCTTTSSSSSSCSGGGSSTTTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHH----------------------
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHhc------CChhHHHHHHHHHhCchHHHHHHHh----------------------
Confidence 2444555566777777766433321 2445565555555555554443222
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhH
Q 003295 472 LCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEG 551 (833)
Q Consensus 472 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 551 (833)
--.++-+ ..-...++..|-..|-+++-+.+++.-.... ......|+.|.-.|++- ++++.
T Consensus 222 -------------GLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKl 281 (624)
T 3lvg_A 222 -------------GLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKM 281 (624)
T ss_dssp -------------HHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHH
T ss_pred -------------cchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHH
Confidence 1111111 0011235666778888888888888876432 23667777777777764 45555
Q ss_pred HHHHHHHHHC-CCCC------CHHHHHHHHHHHHhcCCHHHHH
Q 003295 552 FKLKEDMIKR-GIQP------DNYTYNLLLHGLCSLGKMEEAI 587 (833)
Q Consensus 552 ~~~~~~m~~~-g~~p------~~~~~~~li~~~~~~g~~~~A~ 587 (833)
.+.++..-.+ +++- ....|.-++-.|++-.+++.|.
T Consensus 282 mEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 282 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 5544432221 1110 1233555555555555555443
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.40 E-value=0.0072 Score=64.32 Aligned_cols=62 Identities=11% Similarity=-0.024 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCC-CCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 744 TYTIMIGGYCKLGDMKEAAKLLNVMAE-----KGI-SPD-SITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 744 ~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
+++.|..+|...|++++|+.+++++++ .|- .|+ ..+++.|+..|..+|++++|..++++.++
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 455555555556666666555555543 120 112 24566666666666666666666666554
No 214
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.36 E-value=0.14 Score=60.00 Aligned_cols=103 Identities=13% Similarity=0.051 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc
Q 003295 291 NNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKK 370 (833)
Q Consensus 291 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~ 370 (833)
..++..+.+.|..++|.++.+... .-.......|++++|.++.+.+ .+...|..|...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 555555556666666665432110 1122234556666666654332 2455666666666666
Q ss_pred CChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003295 371 GNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLS 420 (833)
Q Consensus 371 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~ 420 (833)
|+++.|.+.|..+.. |..+...+...|+.+...++.+....
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666665542 33344444445555554444444443
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.27 E-value=0.18 Score=59.06 Aligned_cols=164 Identities=15% Similarity=0.080 Sum_probs=84.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHc
Q 003295 571 NLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKI 650 (833)
Q Consensus 571 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 650 (833)
..++..+.+.|..++|.++.+. .. .-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 4455555556666666554321 10 0122234567777776664432 2566777777777777
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHH
Q 003295 651 GNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVL 730 (833)
Q Consensus 651 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 730 (833)
|+++.|.+.|.++.. |..+...+...|+.+...++-+.....| -++....+|.+.|++++|+++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~- 758 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDL- 758 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHH-
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHH-
Confidence 777777777776532 3344444455565555444444444332 112223334445555555444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhcCCCHH
Q 003295 731 QEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDS----ITYNVFMDGHCKGGNVE 794 (833)
Q Consensus 731 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~ 794 (833)
|.+.+++++|..+.+. ..|.. .........+...|+.+
T Consensus 759 ---------------------~~~~~~~~~A~~lA~~-----~~~~~~~i~~~~~~~~~~L~~~~~~~ 800 (814)
T 3mkq_A 759 ---------------------LIKSQRFSEAAFLGST-----YGLGDNEVNDIVTKWKENLILNGKNT 800 (814)
T ss_dssp ---------------------HHHTTCHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred ---------------------HHHcCChHHHHHHHHH-----hCCChHHHHHHHHHHHHHHHhccchh
Confidence 3344566666665444 23444 34444445555556543
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.24 E-value=0.0099 Score=63.27 Aligned_cols=85 Identities=9% Similarity=-0.024 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHHHC---CCCC----ChhHHHHHHHHHHhcCChhHHHHHHHHHHh-----CC-CCCC-HHHHHHHHHH
Q 003295 686 GLIEDAKCLFDEMRKE---GLLP----NVACYTALIGGYCKLGQMDEAESVLQEMAS-----IN-IHPN-KITYTIMIGG 751 (833)
Q Consensus 686 g~~~~A~~~~~~m~~~---g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~-~~~~~~li~~ 751 (833)
|++++|+.++++.++. -+.| ...+++.|..+|...|++++|+.++++..+ .| -.|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 5566666666655431 1112 124566677777777777777777776653 12 1222 2467777777
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 003295 752 YCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 752 ~~~~g~~~~A~~~~~~m~~ 770 (833)
|..+|++++|+.+++++++
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 8888888888877777654
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.22 E-value=0.0093 Score=48.37 Aligned_cols=56 Identities=27% Similarity=0.343 Sum_probs=32.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 714 IGGYCKLGQMDEAESVLQEMASINIHPNKI-TYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 714 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
...+.+.|++++|.+.++++.+.. +.+.. .|..+..+|...|++++|++.|+++++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555666666666666665532 33444 556666666666666666666666665
No 218
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.21 E-value=2e-05 Score=81.29 Aligned_cols=266 Identities=12% Similarity=0.115 Sum_probs=190.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 003295 217 SLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHG 296 (833)
Q Consensus 217 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 296 (833)
.+.+|..|..+..+.+++.+|++-|-+. .|...|.-+|.+..+.|.+++-...+....+.. -++..=+.|+-+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 3558999999999999999998877332 455668889999999999999999887776653 355666789999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHH
Q 003295 297 LCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEA 376 (833)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A 376 (833)
|++.|++.+-.+++ . .||+.-...+..-|...|.++.|.-+|..+. -|.-|...+.+.|++.+|
T Consensus 126 yAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSS
T ss_pred HHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHH
Confidence 99999988755543 1 4788778889999999999999888776443 355566778889999988
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003295 377 LKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLR 456 (833)
Q Consensus 377 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 456 (833)
.+.-++. -+..||-.+-.+|...+++.-|.-.--.++ ....-...++..|-..|.+++-+.+++..+..
T Consensus 190 VdaArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniI-----vhadeL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 190 VDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHH-----CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhc-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 7765432 277899999999999999887765443333 23445667788899999999999998877632
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC------CHHHHHHHHHHHHhcCCHHHHHH
Q 003295 457 NLRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEK-GFTV------NTVTSNALIHGMCEAGNLKEAGK 518 (833)
Q Consensus 457 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~------~~~~~~~li~~~~~~g~~~~A~~ 518 (833)
-......++-|.-.|++-. .++-.+-++....+ +++. ....|.-++-.|++-.+++.|..
T Consensus 259 -ErAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 259 -ERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp -TTCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred -CchhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 2345667777777777653 33333333332222 2221 23356777777777777776643
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.16 E-value=0.13 Score=50.25 Aligned_cols=87 Identities=16% Similarity=0.225 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhcC-C
Q 003295 723 MDEAESVLQEMASINIHPN---KITYTIMIGGYCKL-----GDMKEAAKLLNVMAEKGISP--DSITYNVFMDGHCKG-G 791 (833)
Q Consensus 723 ~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~-g 791 (833)
..+|..++++.++. .|+ ...|..++..|.+. |+.++|.+.|+++++ +.| +..++..+.+.++.. |
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence 46677777777773 565 55788888888874 888888888888888 456 367777788888774 8
Q ss_pred CHHHHHHHHHHHHHCCCC--CCHH
Q 003295 792 NVEEAFKVCDRMLSEGLS--LDEI 813 (833)
Q Consensus 792 ~~~~A~~~~~~m~~~g~~--p~~~ 813 (833)
+.++|.+.+++.+..... |+..
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChh
Confidence 888888888888886665 5543
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.13 E-value=0.0095 Score=48.32 Aligned_cols=56 Identities=16% Similarity=0.260 Sum_probs=32.9
Q ss_pred HHHHhcCChhHHHHHHHHhhcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003295 226 NSLVKANEVQKGIEVFETMCRGVSPDVF-LFSTAINAFCKRGRIEDAIGLFTKMEEL 281 (833)
Q Consensus 226 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (833)
..+.+.|++++|...|++++...+.+.. .+..+..+|.+.|++++|.+.|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445556666666666666533344455 5666666666666666666666666654
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.13 E-value=0.014 Score=62.18 Aligned_cols=62 Identities=13% Similarity=-0.010 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCC---C-HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 744 TYTIMIGGYCKLGDMKEAAKLLNVMAE---KGISP---D-SITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 744 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
+++.++.+|...|++++|+.+++++++ +-+.| + ..+++.|+..|..+|++++|..++++.++
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 455555555555555555555555543 10112 1 14456666666666666666666665543
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.05 E-value=0.024 Score=45.38 Aligned_cols=64 Identities=13% Similarity=0.108 Sum_probs=32.3
Q ss_pred ChhHHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 706 NVACYTALIGGYCKLGQ---MDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 706 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
|...+..+..++...++ .++|..++++..+.. +-+......+...+.+.|++++|+..|+++++
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444555554443332 455555555555532 33444555555555555555555555555555
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.03 E-value=0.034 Score=59.19 Aligned_cols=92 Identities=15% Similarity=0.071 Sum_probs=64.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC---CCCCC----hhHHHHHHHHHHhcCChhHHHHHHHHHHh-----CC-CCCC-HHH
Q 003295 679 IHGLCNIGLIEDAKCLFDEMRKE---GLLPN----VACYTALIGGYCKLGQMDEAESVLQEMAS-----IN-IHPN-KIT 744 (833)
Q Consensus 679 i~~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~-~~~ 744 (833)
+..+.+.|++++|+.++++.++. -+.|+ ..+++.+...|...|++++|+.+++++.+ .| -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33455677788888888877653 12222 35677788888888888888888887764 22 1222 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 745 YTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 745 ~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
++.|...|...|++++|+.+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888889999999999988888764
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.84 E-value=0.064 Score=46.87 Aligned_cols=85 Identities=18% Similarity=0.108 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhcCCCHHHHH
Q 003295 723 MDEAESVLQEMASINIHPNKITYTIMIGGYCKLG---DMKEAAKLLNVMAEKGISP--DSITYNVFMDGHCKGGNVEEAF 797 (833)
Q Consensus 723 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~ 797 (833)
+..+.+.|.+..+.| +++..+...+.+++++.+ +.++++.++++..+.. .| +...+..|.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 445566666665555 467777777777777776 5557777777777653 24 3455666677777777777777
Q ss_pred HHHHHHHHCCCCCC
Q 003295 798 KVCDRMLSEGLSLD 811 (833)
Q Consensus 798 ~~~~~m~~~g~~p~ 811 (833)
++++.+++ +.|+
T Consensus 92 ~y~~~lL~--ieP~ 103 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHHH--HCTT
T ss_pred HHHHHHHh--cCCC
Confidence 77777777 5665
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.63 E-value=0.13 Score=40.96 Aligned_cols=66 Identities=11% Similarity=-0.003 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003295 250 PDVFLFSTAINAFCKRGR---IEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLR 316 (833)
Q Consensus 250 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (833)
.|...+..+..++...++ .++|..+|++..+..+. ++.....+...+.+.|++++|+..++++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344444444444433322 34555555554443221 3334444444444555555555555555443
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.30 E-value=0.083 Score=43.28 Aligned_cols=64 Identities=11% Similarity=-0.038 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003295 707 VACYTALIGGYCKLGQMDEAESVLQEMASIN------IHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAE 770 (833)
Q Consensus 707 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 770 (833)
..-+..+...+.+.|+++.|...++++.+.- -.+....+..|..++.+.|++++|..+++++.+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3444556666777777777777777665420 123455667777777777777777777777766
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.18 E-value=1.2 Score=37.36 Aligned_cols=141 Identities=14% Similarity=0.131 Sum_probs=94.3
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHH
Q 003295 262 FCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDA 341 (833)
Q Consensus 262 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A 341 (833)
+.-.|.+++..++..+.... .+..-||.+|--....-+-+-..++++..-.. -|.. ..|++...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHH
Confidence 44568888888888888774 46677888776666666666666666665432 1221 23333333
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003295 342 NFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSR 421 (833)
Q Consensus 342 ~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~ 421 (833)
...+-.+-. +....+.-++.+..+|+-|+-.+++.++.. +.+|+....-.+..+|.+.|+..+|.+++.++.+.
T Consensus 81 i~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 333332211 333445567778888999988888888654 34667777888888999999999999999998888
Q ss_pred CCC
Q 003295 422 GLS 424 (833)
Q Consensus 422 g~~ 424 (833)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 764
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.18 E-value=0.1 Score=43.85 Aligned_cols=79 Identities=18% Similarity=0.082 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHhcCCCHHHHHHH
Q 003295 725 EAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKE---AAKLLNVMAEKGISP--DSITYNVFMDGHCKGGNVEEAFKV 799 (833)
Q Consensus 725 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~ 799 (833)
.+.+-+.+....| .++..+-..+.+++.+..+..+ ++.+++++...+ .| .......|.-++.+.|++++|.++
T Consensus 19 ~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 19 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3333344333333 2444444455555555554433 555555544432 12 223344445555555555555555
Q ss_pred HHHHHH
Q 003295 800 CDRMLS 805 (833)
Q Consensus 800 ~~~m~~ 805 (833)
++.+++
T Consensus 97 ~~~lL~ 102 (126)
T 1nzn_A 97 VRGLLQ 102 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555555
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.03 E-value=0.63 Score=45.42 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHHc-----CChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc-CChh
Q 003295 339 DDANFVLKEMSVRGFVPN---YVVYNTLIDGYCKK-----GNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKS-GQMD 409 (833)
Q Consensus 339 ~~A~~~~~~m~~~g~~p~---~~~y~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~ 409 (833)
.+|...+++..+. .|+ ...|..|...|.+. |+.++|.+.|++.++.+..-+..++....+.++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4555555655554 333 34566666666663 67777777777666643221345555566666663 6666
Q ss_pred HHHHHHHHHHHCCCC
Q 003295 410 NAENALEEMLSRGLS 424 (833)
Q Consensus 410 ~A~~~l~~~~~~g~~ 424 (833)
+|.+.+++.......
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 777777666665443
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.47 E-value=0.16 Score=41.57 Aligned_cols=64 Identities=9% Similarity=0.027 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003295 672 SVTYSSLIHGLCNIGLIEDAKCLFDEMRKEG------LLPNVACYTALIGGYCKLGQMDEAESVLQEMAS 735 (833)
Q Consensus 672 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 735 (833)
..-+..|...+.+.|+++.|..+|+.+.+.- -.+...++..|..++.+.|++++|...++++.+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3444555666666666666666666655420 112344556666666666666666666666665
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.34 E-value=0.77 Score=41.15 Aligned_cols=128 Identities=16% Similarity=0.168 Sum_probs=88.8
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhH
Q 003295 646 AYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDE 725 (833)
Q Consensus 646 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 725 (833)
...+.|+++.|.++.+++ .+...|..|.......|+++-|++.|.+... +..+.-.|.-.|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 346789999999988765 3788899999999999999999999887654 3455556667888877
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003295 726 AESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRM 803 (833)
Q Consensus 726 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 803 (833)
-.++-+.....| . ++.....+...|+++++++++.+. |-.|... .+. ...|..+.|.++.+++
T Consensus 79 L~kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~---~~A---~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 79 LSKMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEG---GSLPLAY---AVA---KANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHH---HHH---HHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHC---CChHHHH---HHH---HHcCcHHHHHHHHHHh
Confidence 777766666554 1 344555667789999999988653 2112111 111 2246777887777655
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.19 E-value=2 Score=36.13 Aligned_cols=139 Identities=8% Similarity=-0.008 Sum_probs=83.8
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHH
Q 003295 649 KIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAES 728 (833)
Q Consensus 649 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 728 (833)
-.|..++..++..+..+.. +..-||.+|--....-+=+-..+.++..-+- -|. ..+|++.....
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 3466677777776666542 4444555554444444444344444433221 111 12344444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC
Q 003295 729 VLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGL 808 (833)
Q Consensus 729 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 808 (833)
.+-.+ .-+....+..++.+..+|+-++-.+++..+... ..|++.....+..+|.+.|+..+|.+++.++-++|+
T Consensus 83 C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 33332 123445566677778888888888888886442 577888888888888888888888888888888887
Q ss_pred C
Q 003295 809 S 809 (833)
Q Consensus 809 ~ 809 (833)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 6
No 233
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.16 E-value=11 Score=43.62 Aligned_cols=261 Identities=13% Similarity=0.065 Sum_probs=136.8
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-------CCCHhhHHHHHH
Q 003295 540 LGCCKDGKPEEGFKLKEDMIKRGIQPD--NYTYNLLLHGLCSLGKMEEAIELWEECKRTVF-------GPDIYTYGVMID 610 (833)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~li~ 610 (833)
-+....|+.++++.+++..+..+-..+ ...-..+.-+....|..+++..++.......- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 356667888888888877665321112 22333344455566666677777776654321 011222233333
Q ss_pred HHHccCC-HHHHHHHHHHHHHCCCccCHHHHH--HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003295 611 GFCKADK-IEEGETLFNEMISKKMELNPVVYN--TLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGL 687 (833)
Q Consensus 611 ~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 687 (833)
++.-.|. -+++.+.+..++...-. ...... ++...+...|+.+....++..+.+.. ..+..-...+.-++...|+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC
Confidence 4443443 24566666666654211 111112 22333445677777777777766542 1122222333334446788
Q ss_pred HHHHHHHHHHHHHCCCCCChhHH--HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003295 688 IEDAKCLFDEMRKEGLLPNVACY--TALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLL 765 (833)
Q Consensus 688 ~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 765 (833)
.+.+..+++.+.... .|....- .++.-+|+..|+.....+++..+.+.. ..+....-.+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 888888888877631 2222221 133455667788777777888887632 222222233333444566666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCCH-HHHHHHHHHHHH
Q 003295 766 NVMAEKGISPDSITYNVFMDGHCKGGNV-EEAFKVCDRMLS 805 (833)
Q Consensus 766 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~ 805 (833)
+.+.+.+ .|...--..+.-+....|.. .+|+..+..+..
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 6555543 44444334444444444443 678888888875
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.09 E-value=0.56 Score=40.32 Aligned_cols=101 Identities=16% Similarity=0.062 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHhcCCh------hHHHHHHHHhhcCCCCCHH-HHHHHHH------HHHhcCChhHHHHHHHHHHHcCC
Q 003295 217 SLKTCNFLLNSLVKANEV------QKGIEVFETMCRGVSPDVF-LFSTAIN------AFCKRGRIEDAIGLFTKMEELGI 283 (833)
Q Consensus 217 ~~~~~~~ll~~~~~~g~~------~~A~~~~~~~~~~~~~~~~-~~~~li~------~~~~~g~~~~A~~~~~~m~~~g~ 283 (833)
|..+|-..+..+-+.|+. ++.+++|+++...+||+.. .|...|. .+...+++++|+++|+.+.+.+-
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hK 91 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCK 91 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhH
Confidence 566777777777777777 7778888887765666531 1111111 11233666667777766655421
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003295 284 APNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREV 318 (833)
Q Consensus 284 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 318 (833)
.- ...|-.....-.+.|++..|++++.+....+.
T Consensus 92 kF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 92 KF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp TB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 11 44455555555566666666666666666543
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.05 E-value=0.31 Score=40.89 Aligned_cols=88 Identities=11% Similarity=0.103 Sum_probs=62.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHH
Q 003295 685 IGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDE---AESVLQEMASINIHP--NKITYTIMIGGYCKLGDMK 759 (833)
Q Consensus 685 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~ 759 (833)
...+..+.+-|.+....| .++..+-..+..++.+..+..+ ++.+++.....+ .| .......|.-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 334555666666666655 3677776777888888776555 888888887653 23 3345666777888999999
Q ss_pred HHHHHHHHHHHcCCCCC
Q 003295 760 EAAKLLNVMAEKGISPD 776 (833)
Q Consensus 760 ~A~~~~~~m~~~g~~p~ 776 (833)
+|.++++.+++ +.|+
T Consensus 92 ~A~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 92 KALKYVRGLLQ--TEPQ 106 (126)
T ss_dssp HHHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHHH--hCCC
Confidence 99999999888 4564
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.04 E-value=2.6 Score=37.68 Aligned_cols=101 Identities=11% Similarity=0.103 Sum_probs=64.8
Q ss_pred HHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003295 612 FCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIGLIEDA 691 (833)
Q Consensus 612 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 691 (833)
..+.|+++.|.++.+++ .+...|..+.......|+++-|.+.|.+... +..+.-.|.-.|+.++-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34577777777777665 2677788888888888888888887776532 34444455666776666
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 003295 692 KCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAESVLQEM 733 (833)
Q Consensus 692 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 733 (833)
.++-+.....| -++.-...+.-.|+++++.+++.+.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 65555555443 1334444555677777777776543
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.84 E-value=0.99 Score=38.83 Aligned_cols=32 Identities=13% Similarity=0.097 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHHhcCCh------hHHHHHHHHHHH
Q 003295 249 SPDVFLFSTAINAFCKRGRI------EDAIGLFTKMEE 280 (833)
Q Consensus 249 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~ 280 (833)
+.|..+|-..+..+-+.|+. ++.+++|++...
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia 47 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE 47 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH
Confidence 34555666666666666666 666666666655
No 238
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.38 E-value=9.4 Score=37.86 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003295 496 NTVTSNALIHGMCEAGNLKEAGKLLM 521 (833)
Q Consensus 496 ~~~~~~~li~~~~~~g~~~~A~~~l~ 521 (833)
++.....+...|.+.|++.+|...|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 66777777778888888877777664
No 239
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.94 E-value=6.8 Score=33.39 Aligned_cols=71 Identities=15% Similarity=0.077 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC
Q 003295 739 HPNKITYTIMIGGYCKLGDM---KEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSLD 811 (833)
Q Consensus 739 ~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 811 (833)
.|+..+-..+.+++.+..+. .+++.+++++...+..-.......|.-++.+.|++++|.++.+.+++ +.|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCC
Confidence 34555555555555555443 34555555555532111223444455556666666666666666665 4554
No 240
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.33 E-value=3.2 Score=34.88 Aligned_cols=71 Identities=15% Similarity=0.077 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC
Q 003295 739 HPNKITYTIMIGGYCKLGDM---KEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSLD 811 (833)
Q Consensus 739 ~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 811 (833)
.|+..+--.+.+++.+..+. .+++.+++++...+..-....+..|.-++.+.|++++|.++.+.+++ +.|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 44555555555555555443 34555555555533111234445555556666666666666666655 4554
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.94 E-value=22 Score=37.60 Aligned_cols=51 Identities=10% Similarity=0.051 Sum_probs=34.4
Q ss_pred cCChhhHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 003295 545 DGKPEEGFKLKEDMIKR-----GIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKR 595 (833)
Q Consensus 545 ~g~~~~A~~~~~~m~~~-----g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 595 (833)
.|++++|++.+-.+.+. ...........++..|...++++...+.+..+.+
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 36777888777666543 2334566677788888888888887776665543
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.39 E-value=6.6 Score=47.52 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 003295 325 YSILINGLIKLEKFDDANFVLKEMSVRGFVPN----YVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIH 400 (833)
Q Consensus 325 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 400 (833)
|..++..|-+.+.++.+.+.-....+....-+ ...|..+..++...|++++|...+-.+.....+ ......||.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHH
Confidence 34444444455555554444443332211101 013444445555555555555555444433222 122333333
Q ss_pred HHHhc------------CChhHHHHHHHHHHHCC--CCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 003295 401 GFCKS------------GQMDNAENALEEMLSRG--LSINQGAYTSVIKWLCINSRFNSALHFTKE 452 (833)
Q Consensus 401 ~~~~~------------g~~~~A~~~l~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 452 (833)
..|.. |..++..+++....+.. +...+..|..|-..+..+|++..|-.++-+
T Consensus 980 ~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe 1045 (1139)
T 4fhn_B 980 QLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYE 1045 (1139)
T ss_dssp HHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHH
Confidence 33332 33445555554332211 111223456666667777777766554433
No 243
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.30 E-value=18 Score=35.80 Aligned_cols=112 Identities=15% Similarity=0.017 Sum_probs=67.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHhhCCCCCCHHHHHHHHH
Q 003295 465 LTLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKL----LMEMLQRGLILDKVTYNTLIL 540 (833)
Q Consensus 465 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~----l~~m~~~g~~~~~~~~~~li~ 540 (833)
|.++..-|.+.+++++|.+++..-.. .+.+.|+...|-++ ++-..+.+.+++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34455667777888888877655322 24455666555543 444555677777777777777
Q ss_pred HHHhcCChh-hHHHHHHHHHHC----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003295 541 GCCKDGKPE-EGFKLKEDMIKR----G--IQPDNYTYNLLLHGLCSLGKMEEAIELWE 591 (833)
Q Consensus 541 ~~~~~g~~~-~A~~~~~~m~~~----g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 591 (833)
.+..-...+ .=.++.+.+++. | ..-|+.....+...|.+.|++.+|...|-
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 665533211 223344444322 1 22366777778888888888888877663
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.80 E-value=3 Score=47.14 Aligned_cols=49 Identities=16% Similarity=0.034 Sum_probs=23.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 003295 683 CNIGLIEDAKCLFDEMRKEGLLP-NVACYTALIGGYCKLGQMDEAESVLQEM 733 (833)
Q Consensus 683 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 733 (833)
...|+++-|+++-++.... .| +-.+|..|..+|.+.|+++.|+-.++.+
T Consensus 348 l~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 348 LNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445555555555555442 23 2345555555555555555555444443
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.47 E-value=20 Score=37.92 Aligned_cols=197 Identities=14% Similarity=0.102 Sum_probs=101.0
Q ss_pred ccCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh--cCCCCCHHHHHHHHHHHHhcCCh
Q 003295 196 NLGFGYAIDVFSIFSS-----KGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMC--RGVSPDVFLFSTAINAFCKRGRI 268 (833)
Q Consensus 196 ~~~~~~A~~~f~~~~~-----~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~ 268 (833)
.+++..|++.+..+.+ .+..-.......++..+.+.|+++...+.+..+. +|..+...+ .+++.+
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~--~~V~~~------ 100 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQ--YMIQKV------ 100 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHH--HHHHHH------
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHH--HHHHHH------
Confidence 3566777776644432 2333457788889999999999998877776655 344333322 233322
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--cCCh-hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 003295 269 EDAIGLFTKMEELGIAPNVVTYNNIIHGLCR--NGRL-YEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVL 345 (833)
Q Consensus 269 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g~~-~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 345 (833)
...+.... .++..+.-.++..+.. .|+. -|.. .......|...+...|++.+|..++
T Consensus 101 ---~~~l~~~~----~~d~~~~~~~i~~l~~vte~kiflE~e-------------rarl~~~La~i~e~~g~~~eA~~iL 160 (445)
T 4b4t_P 101 ---MEYLKSSK----SLDLNTRISVIETIRVVTENKIFVEVE-------------RARVTKDLVEIKKEEGKIDEAADIL 160 (445)
T ss_dssp ---HHHHHHHC----TTHHHHHHHHHHCCSSSSSCCCCCCHH-------------HHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ---HHHHhcCC----chhHHHHHHHHHHHHHHhccchHHHHH-------------HHHHHHHHHHHHHHccCHHHHHHHH
Confidence 22222221 1122222222222110 1110 0000 0011233555566666666666666
Q ss_pred HHHHHC--CCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHh----CCCCCC--hhHHHHHHHHHHhcCChhHHHHH
Q 003295 346 KEMSVR--GFVPN---YVVYNTLIDGYCKKGNISEALKIRDDMVS----KGMSPN--SVTFNSLIHGFCKSGQMDNAENA 414 (833)
Q Consensus 346 ~~m~~~--g~~p~---~~~y~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~--~~~~~~li~~~~~~g~~~~A~~~ 414 (833)
.++... |.... +..|...+..|...+++.+|..++.++.. ....|+ ...|...+..+...+++.+|...
T Consensus 161 ~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~ 240 (445)
T 4b4t_P 161 CELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQY 240 (445)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 665432 11111 33455566677777777777777766532 222222 23455666666777777777777
Q ss_pred HHHHHH
Q 003295 415 LEEMLS 420 (833)
Q Consensus 415 l~~~~~ 420 (833)
|.++.+
T Consensus 241 y~e~~~ 246 (445)
T 4b4t_P 241 LQEIYQ 246 (445)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 766654
No 246
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.91 E-value=23 Score=35.32 Aligned_cols=166 Identities=17% Similarity=0.090 Sum_probs=86.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHHhhCCCCCCHHHHHHHHHH
Q 003295 466 TLLVSGLCKNGKQAEATELCFRLFEKGFTVNTVTSNALIHGMCEAGNLKEAGKLL----MEMLQRGLILDKVTYNTLILG 541 (833)
Q Consensus 466 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~l----~~m~~~g~~~~~~~~~~li~~ 541 (833)
.++..-|.+.+++++|.+++..-.. .+.+.|+...|.++- +-..+.++++|......++..
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4455556777777777776544222 234445554444433 444455666777666666666
Q ss_pred HHhcCChh-hHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHc
Q 003295 542 CCKDGKPE-EGFKLKEDMIK----RG--IQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCK 614 (833)
Q Consensus 542 ~~~~g~~~-~A~~~~~~m~~----~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 614 (833)
+.....-+ .=.++.+.+++ .| ..-|+.....+...|.+.+++.+|...|- .|..+.+..+..++--+.+
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYK 179 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHH
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHH
Confidence 65544321 11223333322 12 33467777778888888888888887772 2323333455444333333
Q ss_pred cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003295 615 ADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKS 665 (833)
Q Consensus 615 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 665 (833)
.+...+ ++...-..++ .|.-.++...|..+++...+
T Consensus 180 ~~~~~e--------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 180 QDESHT--------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp TSCGGG--------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred hcCCcc--------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 222111 1222222222 34456777777776665543
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.88 E-value=3.4 Score=46.71 Aligned_cols=52 Identities=19% Similarity=0.149 Sum_probs=31.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003295 750 GGYCKLGDMKEAAKLLNVMAEKGISP-DSITYNVFMDGHCKGGNVEEAFKVCDRM 803 (833)
Q Consensus 750 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 803 (833)
.-|...|+++-|+++.++++. +.| +..+|..|..+|...|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 334455666666666666665 334 3466666666666666666666666555
No 248
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.34 E-value=48 Score=38.32 Aligned_cols=311 Identities=14% Similarity=0.048 Sum_probs=166.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHhcCChhhHHHHHHHHHHCCC-------CCCHHHHHHHHH
Q 003295 505 HGMCEAGNLKEAGKLLMEMLQRGLILDK--VTYNTLILGCCKDGKPEEGFKLKEDMIKRGI-------QPDNYTYNLLLH 575 (833)
Q Consensus 505 ~~~~~~g~~~~A~~~l~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------~p~~~~~~~li~ 575 (833)
-+....|+.++++.+++.....+-..+. ..-..+.-+....|..+++..++...+...- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3566778888888888776653211132 2333344556666766778887777665421 011222223333
Q ss_pred HHHhcCC-HHHHHHHHHHHhhCCCCCCHhh--HH--HHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHc
Q 003295 576 GLCSLGK-MEEAIELWEECKRTVFGPDIYT--YG--VMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKI 650 (833)
Q Consensus 576 ~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~--~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 650 (833)
++.-.|. -+++.+.+..+.... +..+ .. ++...++-.|+-+....++..+.+.. .-+..-...+.-++...
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhC
Confidence 3333332 245666666665532 2221 22 23334556777777777777776642 11222223333344567
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCChhHHH
Q 003295 651 GNTTAAFRLSNDMKSRGILPTSVTYS---SLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGGYCKLGQMDEAE 727 (833)
Q Consensus 651 g~~~~A~~~~~~m~~~~~~p~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 727 (833)
|+.+.+..+.+.+.... .|.. -|. .+.-+|+..|+.....+++..+.... ..++.-...+.-++...|+.+.+.
T Consensus 538 g~~e~~~~li~~L~~~~-dp~v-Rygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLL-RYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHH-HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CChHHHHHHHHHHHhCC-CHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 89998888888887642 2222 232 33445677888877777998888742 233333333444555578877788
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHH--HHHHhcCC-------CHHHHH
Q 003295 728 SVLQEMASINIHPNKITYTIMIGGYCKLGDM-KEAAKLLNVMAEKGISPDSITYNVF--MDGHCKGG-------NVEEAF 797 (833)
Q Consensus 728 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~l--~~~~~~~g-------~~~~A~ 797 (833)
++++.+.+.+ .|....--.+.-+....|+. .+|+..+..+.. .+|..+-..- .-+..-.| +....+
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l 690 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADIN 690 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHH
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHH
Confidence 8887776654 44444333444444445543 678888888875 3455433222 22333333 233333
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHhhccCC
Q 003295 798 KVCDRMLSE-GLSLDEITYTTLIDGWQSST 826 (833)
Q Consensus 798 ~~~~~m~~~-g~~p~~~~~~~l~~~~~~~~ 826 (833)
+.+...... .-.++...-..+-.|+.+.|
T Consensus 691 ~~L~~~~~dk~~d~~~~fga~iAqGll~aG 720 (963)
T 4ady_A 691 KNFLSVITNKHQEGLAKFGACVAQGIMNAG 720 (963)
T ss_dssp HHHHHHHHCSSSCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHhcC
Confidence 333333331 22333555556666666554
No 249
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.95 E-value=13 Score=31.71 Aligned_cols=71 Identities=13% Similarity=0.114 Sum_probs=43.2
Q ss_pred CCChhHHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003295 704 LPNVACYTALIGGYCKLGQ---MDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPD 776 (833)
Q Consensus 704 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 776 (833)
.|+..+--.+..++.+..+ ..+++.+++.+...+-.-.......|.-++.+.|++++|.++.+.+++ +.|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCC
Confidence 4555555556666666654 345666777766532111234555566677777777777777777777 4564
No 250
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.50 E-value=31 Score=34.39 Aligned_cols=81 Identities=12% Similarity=0.076 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 003295 495 VNTVTSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLL 574 (833)
Q Consensus 495 ~~~~~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 574 (833)
-|+.....+...|.+.+++.+|...|- .|-.+....+..++.-+...+...++ |.+.-.+++
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaVL 195 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAVL 195 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHHH
Confidence 366677777778888888888777762 23332335555555444443332211 222222222
Q ss_pred HHHHhcCCHHHHHHHHHHHh
Q 003295 575 HGLCSLGKMEEAIELWEECK 594 (833)
Q Consensus 575 ~~~~~~g~~~~A~~~~~~~~ 594 (833)
.|...++...|..+++...
T Consensus 196 -~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 196 -PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp -HHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHhCCHHHHHHHHHHHH
Confidence 2444567777777665544
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.83 E-value=2.5 Score=43.98 Aligned_cols=67 Identities=12% Similarity=0.079 Sum_probs=36.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCChhh
Q 003295 257 TAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVL-----REVEPSLIT 324 (833)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~t 324 (833)
.++..+...|++++|...+..+....+ -+...|..++.+|.+.|+..+|++.|++... .|+.|...+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345555556666666655555554422 2444556666666666666666666555432 355555544
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.50 E-value=7.1 Score=32.83 Aligned_cols=71 Identities=13% Similarity=0.114 Sum_probs=40.1
Q ss_pred CCChhHHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003295 704 LPNVACYTALIGGYCKLGQ---MDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPD 776 (833)
Q Consensus 704 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 776 (833)
.|+..+--.+..++.+..+ ..+++.+++++.+.+-.-....+..|.-++.+.|++++|.++.+.+++ +.|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 4455554455556665554 345666666666543111234555566667777777777777777666 4453
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.46 E-value=6.4 Score=40.88 Aligned_cols=68 Identities=16% Similarity=0.138 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 003295 711 TALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAE-----KGISPDSIT 779 (833)
Q Consensus 711 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 779 (833)
..++..+...|+.++|...+..+.... +-+...|..++.+|.+.|+..+|.+.|+++.+ .|+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 334445555566666665555555432 34555556666666666666666655555432 355555543
No 254
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.13 E-value=6.1 Score=31.21 Aligned_cols=60 Identities=12% Similarity=0.196 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHH
Q 003295 201 YAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAIN 260 (833)
Q Consensus 201 ~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 260 (833)
+..+.++.+-..+..|++....+.+.++-|.+++..|.++|+.+...+.+...+|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 455666666778889999999999999999999999999999988222233445655553
No 255
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=82.47 E-value=5.3 Score=31.53 Aligned_cols=47 Identities=17% Similarity=0.340 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003295 725 EAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEK 771 (833)
Q Consensus 725 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 771 (833)
+..+-++.+...++.|++.+..+.+++|.+.+++.-|+++++-...+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444445555555566666666666666666666666665555544
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.21 E-value=23 Score=42.76 Aligned_cols=143 Identities=10% Similarity=0.009 Sum_probs=73.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC------------------
Q 003295 538 LILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFG------------------ 599 (833)
Q Consensus 538 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------------------ 599 (833)
++..+.+.+..+-+.++..- ++.+...-..+..++...|++++|.+.|++... |+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccc
Confidence 44445555555554443321 122333334455556666666666666654321 110
Q ss_pred -----CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 003295 600 -----PDIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNP----VVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILP 670 (833)
Q Consensus 600 -----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 670 (833)
.-..-|..++..+.+.+.++.+.++-...++....-+. ..|..+.+++...|++++|...+-.+.....+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 01123455666666667776666666555543221111 24666667777777777777777666554322
Q ss_pred CHHHHHHHHHHHHhcCCH
Q 003295 671 TSVTYSSLIHGLCNIGLI 688 (833)
Q Consensus 671 ~~~~~~~li~~~~~~g~~ 688 (833)
...+..|+..+|..|..
T Consensus 971 -~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp -HHHHHHHHHHHHHHCCH
T ss_pred -HHHHHHHHHHHHhCCCh
Confidence 33445555555555443
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.44 E-value=4.3 Score=35.71 Aligned_cols=116 Identities=8% Similarity=-0.006 Sum_probs=56.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCh-------hHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHHHH
Q 003295 677 SLIHGLCNIGLIEDAKCLFDEMRKE-GLLPNV-------ACYTALIGGYCKLGQMDEAESVLQEMASI--NIHPNKITYT 746 (833)
Q Consensus 677 ~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~ 746 (833)
.-+..+...|.++.|+-+.+.+... +..|+. .++..+.+++...|++..|...|++.... .+.-+..+..
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3345556666666666665554432 112331 13444556666666666666666665421 1111111111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 747 IMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 747 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
.+. ....... ......+...-..+..+|.+.|++++|+.+++.+..
T Consensus 105 ~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 105 STG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 010 0000000 001223445556688899999999999999876543
No 258
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=80.45 E-value=56 Score=33.61 Aligned_cols=28 Identities=14% Similarity=-0.135 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 003295 532 KVTYNTLILGCCKDGKPEEGFKLKEDMI 559 (833)
Q Consensus 532 ~~~~~~li~~~~~~g~~~~A~~~~~~m~ 559 (833)
......|...|.+.|+.++..+++....
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445556666666666666666665543
No 259
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=78.50 E-value=13 Score=32.61 Aligned_cols=56 Identities=9% Similarity=0.093 Sum_probs=34.3
Q ss_pred HHHHHHhcCChhHHHHHHHHhh--cCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003295 224 LLNSLVKANEVQKGIEVFETMC--RGVSPDV-------FLFSTAINAFCKRGRIEDAIGLFTKME 279 (833)
Q Consensus 224 ll~~~~~~g~~~~A~~~~~~~~--~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~ 279 (833)
=+..+...|.++.|+-+.+.++ .+..|++ .++..+..++..+|++..|...|++..
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3445566667777766666654 2233332 245556777777777777777777754
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.88 E-value=36 Score=35.71 Aligned_cols=61 Identities=18% Similarity=0.103 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003295 709 CYTALIGGYCKLGQMDEAESVLQEMASINI--HPNKITYTIMIGGYCKLGDMKEAAKLLNVMA 769 (833)
Q Consensus 709 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 769 (833)
++..+...|.+.|++++|.+.+.++...-. .--...+..+++.+...+++..+...++++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 334455555555555555555555543211 1112344455555555555555555555543
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=75.64 E-value=13 Score=31.10 Aligned_cols=60 Identities=12% Similarity=0.196 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHH
Q 003295 201 YAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAIN 260 (833)
Q Consensus 201 ~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 260 (833)
+..+.++.+-..+..|++....+.+.++-+.+++..|..+|+.+...+.+....|..++.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 445555666677888999999999999999999999999998887323333445555553
No 262
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=74.40 E-value=11 Score=31.52 Aligned_cols=58 Identities=16% Similarity=0.329 Sum_probs=31.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003295 726 AESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDSITYNVFM 784 (833)
Q Consensus 726 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 784 (833)
..+-++.+...++.|++.+..+.+++|.+.+++.-|+++|+-...+ ..+...+|..++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 3444444555555666666666666666666666666666665554 233333444443
No 263
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=72.91 E-value=32 Score=32.23 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=11.6
Q ss_pred HHhcCChhHHHHHHHHHHHcCCC
Q 003295 262 FCKRGRIEDAIGLFTKMEELGIA 284 (833)
Q Consensus 262 ~~~~g~~~~A~~~~~~m~~~g~~ 284 (833)
.++.|+.+....+++.+.+.|..
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCC
Confidence 34455555555555554444433
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=71.82 E-value=15 Score=35.22 Aligned_cols=60 Identities=20% Similarity=0.214 Sum_probs=47.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003295 715 GGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDS 777 (833)
Q Consensus 715 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 777 (833)
..+.+.|++++|++....-++.. +-|...-..|+..+|-.|+++.|.+-++...+ +.|+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchh
Confidence 34567888999998888888764 66777777888889999999999998888887 45654
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=71.45 E-value=27 Score=31.82 Aligned_cols=56 Identities=21% Similarity=0.186 Sum_probs=38.1
Q ss_pred cCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003295 720 LGQMDEAESVLQEMASINIHPN-KITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISP 775 (833)
Q Consensus 720 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 775 (833)
.++..++..+|..|...|+--. ...|......+-..|++++|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3446677777777776665443 3456667777777777777777777777766666
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=70.44 E-value=18 Score=28.45 Aligned_cols=15 Identities=7% Similarity=0.155 Sum_probs=6.2
Q ss_pred HHhcCChhHHHHHHH
Q 003295 228 LVKANEVQKGIEVFE 242 (833)
Q Consensus 228 ~~~~g~~~~A~~~~~ 242 (833)
+..+|++++|..+.+
T Consensus 50 LmNrG~Yq~Al~l~~ 64 (116)
T 2p58_C 50 LMNRGDYASALQQGN 64 (116)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHcchhHHHHHHhcC
Confidence 334444444444433
No 267
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=69.63 E-value=43 Score=31.22 Aligned_cols=87 Identities=13% Similarity=0.037 Sum_probs=47.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhh--HHHHHHHHH
Q 003295 293 IIHGLCRNGRLYEAFHLKEKMVLREVEPSLIT--YSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVV--YNTLIDGYC 368 (833)
Q Consensus 293 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--y~~li~~~~ 368 (833)
.+...++.|+.+-...+++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 34445677888888888777666655444321 123344455666654 3444455665554322 123444556
Q ss_pred HcCChHHHHHHHHHH
Q 003295 369 KKGNISEALKIRDDM 383 (833)
Q Consensus 369 ~~g~~~~A~~~~~~m 383 (833)
..|+.+-...+++..
T Consensus 88 ~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 88 EHRSPTCLRALLDSA 102 (241)
T ss_dssp HTTCHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHcC
Confidence 677776555555543
No 268
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=69.47 E-value=13 Score=35.04 Aligned_cols=98 Identities=10% Similarity=0.017 Sum_probs=42.8
Q ss_pred HHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003295 204 DVFSIFSSKGIFPSLK--TCNFLLNSLVKANEVQKGIEVFETMCR-GVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEE 280 (833)
Q Consensus 204 ~~f~~~~~~~~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (833)
++++.+.+.|..++.. .-.+.+...++.|+.+-+..+++.-.. ....+..-.+ .+...+..|+.+-. +.+.+
T Consensus 23 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t-~L~~A~~~~~~~~v----~~Ll~ 97 (240)
T 3eu9_A 23 ERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNST-PLHWATRQGHLSMV----VQLMK 97 (240)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBC-HHHHHHHHTCHHHH----HHHHH
T ss_pred HHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCC-hhHHHHHcCCHHHH----HHHHH
Confidence 3444555566544322 112345556677777666655554321 1111111122 33344555665433 34444
Q ss_pred cCCCCChhh--HHHHHHHHHhcCChhHH
Q 003295 281 LGIAPNVVT--YNNIIHGLCRNGRLYEA 306 (833)
Q Consensus 281 ~g~~p~~~~--~~~li~~~~~~g~~~~A 306 (833)
.|..++... -.+.+...++.|+.+-+
T Consensus 98 ~g~~~~~~~~~g~t~l~~A~~~~~~~~~ 125 (240)
T 3eu9_A 98 YGADPSLIDGEGCSCIHLAAQFGHTSIV 125 (240)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred cCCCCcccCCCCCCHHHHHHHcCHHHHH
Confidence 555444321 11233444556665433
No 269
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=67.01 E-value=17 Score=28.48 Aligned_cols=47 Identities=11% Similarity=0.035 Sum_probs=18.9
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003295 263 CKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVL 315 (833)
Q Consensus 263 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (833)
..+|++++|..+.+.+. .||.+.|-+|-. .|.|--+++...+.++..
T Consensus 50 mNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 50 ANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp HHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 33444444443333222 344444443332 234444444444444433
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=66.95 E-value=13 Score=35.67 Aligned_cols=55 Identities=20% Similarity=0.290 Sum_probs=38.8
Q ss_pred HHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003295 227 SLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEEL 281 (833)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (833)
.+.+.|.+++|+.....-++..|-|...-..++.-+|-.|+++.|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 4556677777777777776666677777777777777777777777777766664
No 271
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.42 E-value=53 Score=34.38 Aligned_cols=97 Identities=12% Similarity=-0.052 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCChhHH--H
Q 003295 639 VYNTLIRAYCKIGNTTAAFRLSNDMKSR--GILPTSVTYSSLIHGLCNIGLIEDAKCLFDEMRKE---GLLPNVACY--T 711 (833)
Q Consensus 639 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~--~ 711 (833)
++..+..-|.+.|++++|.+.+.++... +..--...+..++..+...+++..+...+.++... +-.|+...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5566777777888888888888877754 22223345666677777777777777777776542 212222110 0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 003295 712 ALIGGYCKLGQMDEAESVLQEMAS 735 (833)
Q Consensus 712 ~li~~~~~~g~~~~A~~~~~~m~~ 735 (833)
.-+..+...+++.+|-+.|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111112245666666666655543
No 272
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=63.23 E-value=66 Score=33.55 Aligned_cols=192 Identities=18% Similarity=0.151 Sum_probs=85.0
Q ss_pred HHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003295 204 DVFSIFSSKGIFPSLKT--CNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEEL 281 (833)
Q Consensus 204 ~~f~~~~~~~~~p~~~~--~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (833)
++++.+.+.|..|+... ..+.+...++.|+.+-+..+++.-..-...+..-.+ .+...++.|+.+-..-+ .+.
T Consensus 28 ~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~L----l~~ 102 (437)
T 1n11_A 28 PIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQT-PLHCAARIGHTNMVKLL----LEN 102 (437)
T ss_dssp HHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCC-HHHHHHHHTCHHHHHHH----HHH
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC-HHHHHHHCCCHHHHHHH----HhC
Confidence 34455556666554321 123455556778877766666543211111111122 34444566776544443 344
Q ss_pred CCCCChhh--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 003295 282 GIAPNVVT--YNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLIT--YSILINGLIKLEKFDDANFVLKEMSVRGFVPNY 357 (833)
Q Consensus 282 g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 357 (833)
|..++... -.+.+...++.|+.+-...+++. +..++... -.+.+...++.|+.+- ++.+.+.|..++.
T Consensus 103 ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----~~~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~ 174 (437)
T 1n11_A 103 NANPNLATTAGHTPLHIAAREGHVETVLALLEK----EASQACMTKKGFTPLHVAAKYGKVRV----AELLLERDAHPNA 174 (437)
T ss_dssp TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT----TCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTC
T ss_pred CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC----CCCCcCCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCCCC
Confidence 54444221 12233444567777666555543 22222111 1123334455666543 3344445554442
Q ss_pred hh--HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHH--HHHHHHHHhcCChhHHH
Q 003295 358 VV--YNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTF--NSLIHGFCKSGQMDNAE 412 (833)
Q Consensus 358 ~~--y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~A~ 412 (833)
.. ..+.+...+..|+.+ +++.+.+.|..++...+ .+.+...++.|+.+-+.
T Consensus 175 ~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~ 229 (437)
T 1n11_A 175 AGKNGLTPLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVAR 229 (437)
T ss_dssp CCSSCCCHHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred CCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence 21 122344455666654 33344444544433211 12233445556654333
No 273
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=62.64 E-value=69 Score=30.61 Aligned_cols=16 Identities=13% Similarity=0.144 Sum_probs=6.7
Q ss_pred HHHHhcCChhHHHHHH
Q 003295 226 NSLVKANEVQKGIEVF 241 (833)
Q Consensus 226 ~~~~~~g~~~~A~~~~ 241 (833)
...++.|+.+....++
T Consensus 10 ~~A~~~g~~~~v~~Ll 25 (285)
T 1wdy_A 10 IKAVQNEDVDLVQQLL 25 (285)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHH
Confidence 3334445444443333
No 274
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=61.34 E-value=54 Score=31.44 Aligned_cols=37 Identities=8% Similarity=-0.037 Sum_probs=16.0
Q ss_pred HHHHHHhCCCCCCHH---HHHHHHHHHHhcCChhHHHHHH
Q 003295 205 VFSIFSSKGIFPSLK---TCNFLLNSLVKANEVQKGIEVF 241 (833)
Q Consensus 205 ~f~~~~~~~~~p~~~---~~~~ll~~~~~~g~~~~A~~~~ 241 (833)
+++.+.+.|..++.. .-.+.+...++.|+.+-+..++
T Consensus 20 ~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 59 (285)
T 1wdy_A 20 LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59 (285)
T ss_dssp HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 444455555544322 1123344444555554444433
No 275
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=60.84 E-value=42 Score=31.19 Aligned_cols=9 Identities=22% Similarity=0.058 Sum_probs=4.0
Q ss_pred HHHHcCChH
Q 003295 366 GYCKKGNIS 374 (833)
Q Consensus 366 ~~~~~g~~~ 374 (833)
..++.|+.+
T Consensus 115 ~A~~~~~~~ 123 (240)
T 3eu9_A 115 LAAQFGHTS 123 (240)
T ss_dssp HHHHTTCHH
T ss_pred HHHHcCHHH
Confidence 334445543
No 276
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=60.32 E-value=48 Score=30.16 Aligned_cols=57 Identities=18% Similarity=0.116 Sum_probs=46.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 003295 685 IGLIEDAKCLFDEMRKEGLLPN-VACYTALIGGYCKLGQMDEAESVLQEMASINIHPN 741 (833)
Q Consensus 685 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 741 (833)
.+...++.++|..|..+|+--. ...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4557799999999998866543 45677888888899999999999999998877773
No 277
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.62 E-value=68 Score=34.15 Aligned_cols=65 Identities=9% Similarity=-0.001 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhh--cCCCCCH--HH-HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003295 217 SLKTCNFLLNSLVKANEVQKGIEVFETMC--RGVSPDV--FL-FSTAINAFCKRGRIEDAIGLFTKMEEL 281 (833)
Q Consensus 217 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~~~~~~~--~~-~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (833)
-...+|.+++.|...+.++.|..+..... ....+|. .. +.-+.+.+.-++++.+|.+.|......
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 36688899999999999999999998885 1111221 12 223567777889999999998888765
No 278
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=57.92 E-value=1.1e+02 Score=27.74 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=7.6
Q ss_pred CHHHHHHHHHHHHHcCC
Q 003295 636 NPVVYNTLIRAYCKIGN 652 (833)
Q Consensus 636 ~~~~~~~li~~~~~~g~ 652 (833)
+...-...+.++.+.|.
T Consensus 63 ~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGD 79 (211)
T ss_dssp CHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhhCC
Confidence 44444444444444443
No 279
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=57.52 E-value=64 Score=27.88 Aligned_cols=50 Identities=14% Similarity=0.172 Sum_probs=23.5
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003295 726 AESVLQEMASINIHPN-KITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISP 775 (833)
Q Consensus 726 A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 775 (833)
+..+|..|.++|+--. ...|......+-..|++++|.++++.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4555555554444322 2234444444445555555555555555444444
No 280
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=56.80 E-value=30 Score=33.00 Aligned_cols=55 Identities=15% Similarity=0.013 Sum_probs=30.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhh-------HHHHHHHHH--hcCChhHHHHHHHHHH
Q 003295 260 NAFCKRGRIEDAIGLFTKMEELGIAPNVVT-------YNNIIHGLC--RNGRLYEAFHLKEKMV 314 (833)
Q Consensus 260 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-------~~~li~~~~--~~g~~~~A~~~~~~m~ 314 (833)
...++.|+.+....+++.+.+.|..++... ++.|..+.. +.|+.+-+..+++.-.
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 344567777777777776666665554332 233333321 5566666666665543
No 281
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=54.37 E-value=40 Score=32.07 Aligned_cols=56 Identities=11% Similarity=0.046 Sum_probs=33.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhh-------HHHHHHHHH--hcCChhHHHHHHHHHH
Q 003295 294 IHGLCRNGRLYEAFHLKEKMVLREVEPSLIT-------YSILINGLI--KLEKFDDANFVLKEMS 349 (833)
Q Consensus 294 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-------~~~li~~~~--~~g~~~~A~~~~~~m~ 349 (833)
+...++.|+.+....+++.+.+.|...+... ++.|..+.. +.|+.+-+..+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 3344678888888888887776665554332 233333321 5677776666666543
No 282
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=53.40 E-value=48 Score=32.24 Aligned_cols=174 Identities=11% Similarity=0.003 Sum_probs=69.7
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 003295 207 SIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPN 286 (833)
Q Consensus 207 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 286 (833)
+.+.+.|..++...-.+.+...++.|+.+-+..+++.-..-...|..-++ .+...+..|+.+-+..+++. |..++
T Consensus 48 ~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~----ga~~~ 122 (285)
T 3kea_A 48 CTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNT-ALYYAVDSGNMQTVKLFVKK----NWRLM 122 (285)
T ss_dssp HHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHH----CGGGG
T ss_pred HHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCc-HHHHHHHcCCHHHHHHHHhc----CCCCC
Confidence 33444454433322233444455666666555544431110111222222 23333455665544433333 43333
Q ss_pred hh---hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHH
Q 003295 287 VV---TYNNIIHGLCRNGRLYEAFHLKEKMVLREVEP-SLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNT 362 (833)
Q Consensus 287 ~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~ 362 (833)
.. .+.+.+...+..|+.+-+..+ .+.|..+ +...-.+.+...+..|..+-+..+++.-...... |..-++.
T Consensus 123 ~~~~~g~~t~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~-~~~g~t~ 197 (285)
T 3kea_A 123 FYGKTGWKTSFYHAVMLNDVSIVSYF----LSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTN-NSLLFIP 197 (285)
T ss_dssp GCSSSGGGSHHHHHHHTTCHHHHHHH----HTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTT-CCCBCCT
T ss_pred ccCCCCCCCHHHHHHHcCCHHHHHHH----HhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcc-cCCCCCh
Confidence 22 223444445566665433333 3333222 1112334444445566655554444433222111 1111122
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCChhH
Q 003295 363 LIDGYCKKGNISEALKIRDDMVSKGMSPNSVT 394 (833)
Q Consensus 363 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 394 (833)
.+...++.|+. ++.+.+.+.|..++...
T Consensus 198 ~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 198 DIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp THHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred HHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 23333444543 34444555566555443
No 283
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=53.10 E-value=1.6e+02 Score=28.38 Aligned_cols=17 Identities=29% Similarity=0.262 Sum_probs=7.4
Q ss_pred HHHHhcCChhHHHHHHH
Q 003295 400 HGFCKSGQMDNAENALE 416 (833)
Q Consensus 400 ~~~~~~g~~~~A~~~l~ 416 (833)
...+..|+.+-+.-+++
T Consensus 166 ~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 166 HITIKNGHVDMMILLLD 182 (285)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHH
Confidence 33344455444444443
No 284
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=52.11 E-value=99 Score=34.26 Aligned_cols=76 Identities=13% Similarity=0.153 Sum_probs=45.3
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHcCCCCccccCCCcchHHHHHHHHhhhhccc--C------CcchhhhHHHHHHHHHHh
Q 003295 122 LLIRLLLFSNLLSPARLLLIRLIDGKMPVLYASNPSIRHIEIASQMVDLNVTS--E------PALGVQIADLLVHVYCTQ 193 (833)
Q Consensus 122 ~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~l~~~~~~~ 193 (833)
...++|.-.|.|+.|...|.+. . .....+++-++...+... + +......+..|+..|+..
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~---~---------~vdAVH~AIaL~~~gLL~~~~~lls~~~~~~~lN~arLI~~Yt~~ 366 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF---S---------EMDAVHLAIGLASLKLFKIDSSTRLTKKPKRDIRFANILANYTKS 366 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT---C---------HHHHHHHHHHHHHTTC-----------------CHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc---C---------chhHHHHHHHHHHcCCccCCCcccccCCCcccccHHHHHHHHHHH
Confidence 4556677789999999888643 1 111222333333222211 1 111223477889999999
Q ss_pred hhccCHHHHHHHHHHH
Q 003295 194 FKNLGFGYAIDVFSIF 209 (833)
Q Consensus 194 ~~~~~~~~A~~~f~~~ 209 (833)
++..+..+|++.|-.+
T Consensus 367 F~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 367 FRYSDPRVAVEYLVLI 382 (661)
T ss_dssp TTTTCHHHHHHHHHGG
T ss_pred hhcCCHHHHHHHHHHH
Confidence 9999999999988766
No 285
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=51.90 E-value=85 Score=27.50 Aligned_cols=54 Identities=11% Similarity=0.119 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003295 724 DEAESVLQEMASINIHPN-KITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISPDS 777 (833)
Q Consensus 724 ~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 777 (833)
+++..+|..|.+.|+--. ...|......+-..|++.+|.++|+.-++.+-.|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 446667777776665443 345666666677777777777777777776666643
No 286
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=50.14 E-value=1.5e+02 Score=26.85 Aligned_cols=154 Identities=13% Similarity=0.028 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 003295 216 PSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIH 295 (833)
Q Consensus 216 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 295 (833)
++...-...+..+.+.|.. .+...+..++. .+|...-...+.++.+.|.. ++...+.++.. .+|..+-...+.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~--~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~ 103 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK--DEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAV 103 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT--CSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc--CCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHH
Confidence 3555555566666666653 33444444442 24666666677777777753 34445555543 356666677777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHH
Q 003295 296 GLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISE 375 (833)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~ 375 (833)
++.+.|+. ++...+.++.. .++...-...+.++.+.|.- ++...+.++.. .+|..+-...+.++.+.|. .+
T Consensus 104 aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~ 174 (211)
T 3ltm_A 104 ALGQIGDE-RAVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ER 174 (211)
T ss_dssp HHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HH
T ss_pred HHHHhCcH-HHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hh
Confidence 77777764 34444445543 35655555666666666653 34444555543 3455555556666666655 34
Q ss_pred HHHHHHHHHh
Q 003295 376 ALKIRDDMVS 385 (833)
Q Consensus 376 A~~~~~~m~~ 385 (833)
+...+..+.+
T Consensus 175 ~~~~L~~~l~ 184 (211)
T 3ltm_A 175 VRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555544
No 287
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=49.81 E-value=1.3e+02 Score=30.43 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=13.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH
Q 003295 641 NTLIRAYCKIGNTTAAFRLSNDMK 664 (833)
Q Consensus 641 ~~li~~~~~~g~~~~A~~~~~~m~ 664 (833)
+.++.-|...|+.++|.+.++++.
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHhccCCCHHHHHHHHHHcc
Confidence 444555555566666666555553
No 288
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=49.08 E-value=1.2e+02 Score=30.53 Aligned_cols=64 Identities=16% Similarity=0.218 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC--hhhHHHHHHHHHHCCCC
Q 003295 500 SNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGK--PEEGFKLKEDMIKRGIQ 564 (833)
Q Consensus 500 ~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 564 (833)
.+.++.-|...|+.++|...++++...... .......+..++-+.++ .+...+++..+...|+-
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 466777778888888888888887543222 23334444444444332 34566677777766554
No 289
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=47.45 E-value=39 Score=33.37 Aligned_cols=64 Identities=17% Similarity=0.223 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC--hhhHHHHHHHHHHCCCC
Q 003295 500 SNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGK--PEEGFKLKEDMIKRGIQ 564 (833)
Q Consensus 500 ~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 564 (833)
.+.++.-|...|+.++|...++++...... .......+..++-+.++ .+...+++..+.+.|+-
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 456777788888999999888888532221 23334444444444322 34566777777766554
No 290
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=46.46 E-value=1.5e+02 Score=27.17 Aligned_cols=15 Identities=13% Similarity=0.045 Sum_probs=6.4
Q ss_pred HHhcCChhHHHHHHH
Q 003295 228 LVKANEVQKGIEVFE 242 (833)
Q Consensus 228 ~~~~g~~~~A~~~~~ 242 (833)
.++.|+.+....+++
T Consensus 13 A~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 13 LAYSGKLDELKERIL 27 (231)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHH
Confidence 334444444444443
No 291
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=45.68 E-value=1.2e+02 Score=26.09 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC
Q 003295 761 AAKLLNVMAEKGISP-DSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSLD 811 (833)
Q Consensus 761 A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 811 (833)
+.++|..|..+|+-- -+..|......+...|++++|.++|+.-++.+-.|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 555555555555533 234455555555566666666666666555555554
No 292
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=45.02 E-value=97 Score=28.64 Aligned_cols=15 Identities=20% Similarity=0.102 Sum_probs=6.3
Q ss_pred hcCCHHHHHHHHHHH
Q 003295 474 KNGKQAEATELCFRL 488 (833)
Q Consensus 474 ~~g~~~~A~~~~~~~ 488 (833)
..|+...+.++.+.+
T Consensus 219 ~~~~~~~~~~l~~~l 233 (237)
T 3b7b_A 219 LNSQVWSALQMSKAL 233 (237)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 334444444444443
No 293
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=44.78 E-value=3.5e+02 Score=29.69 Aligned_cols=415 Identities=9% Similarity=0.008 Sum_probs=194.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 003295 289 TYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYC 368 (833)
Q Consensus 289 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~ 368 (833)
.|.....++ +.|+++.+..+...+...-+ .....|..|...+. ....++....+++-... ......-+.-+..+.
T Consensus 9 ~~~~a~~a~-~~~~~~~~~~l~~~l~~~pL-~~yl~y~~l~~~l~-~~~~~ev~~Fl~~~~~~--p~~~~Lr~~~l~~l~ 83 (618)
T 1qsa_A 9 RYAQIKQAW-DNRQMDVVEQMMPGLKDYPL-YPYLEYRQITDDLM-NQPAVTVTNFVRANPTL--PPARTLQSRFVNELA 83 (618)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHSGGGTTSTT-HHHHHHHHHHHTGG-GCCHHHHHHHHHHCTTC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHhhcCCCc-HHHHHHHHHHhCcc-cCCHHHHHHHHHHCCCC--hhHHHHHHHHHHHHH
Confidence 344455543 56888877777665533212 12224444433321 11334333333332210 111122233455566
Q ss_pred HcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHH
Q 003295 369 KKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAENALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALH 448 (833)
Q Consensus 369 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 448 (833)
+.+++......+.. .+.+...-.....+....|+-.+|....+.+-..|. ........++..+.+.|.+....
T Consensus 84 ~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt~~~- 156 (618)
T 1qsa_A 84 RREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDPLA- 156 (618)
T ss_dssp HTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCHHH-
T ss_pred hCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCCHHH-
Confidence 67777666654432 123444555566777778887777776666655442 23444455555544444332211
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 003295 449 FTKEMLLRNLRPGDGLLTLLVSGLCKNGKQAEATELCFRLFEKGFTVNT-VTSNALIHGMCEAGNLKEAGKLLMEMLQRG 527 (833)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~l~~m~~~g 527 (833)
. -.-+......|+...|..+...+ +++. .....++..+..-..+ ...... .
T Consensus 157 ---------------~-~~R~~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~~p~~~---~~~~~~---~- 208 (618)
T 1qsa_A 157 ---------------Y-LERIRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANNPNTV---LTFART---T- 208 (618)
T ss_dssp ---------------H-HHHHHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHCGGGH---HHHHHH---S-
T ss_pred ---------------H-HHHHHHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHhChHhH---HHHHhc---c-
Confidence 1 11123445566666666654433 1222 2223333322222222 221111 1
Q ss_pred CCCCHHH---HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHhhCCCCC
Q 003295 528 LILDKVT---YNTLILGCCKDGKPEEGFKLKEDMIKRGIQPDNYTYNLLLH----GLCSLGKMEEAIELWEECKRTVFGP 600 (833)
Q Consensus 528 ~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~----~~~~~g~~~~A~~~~~~~~~~~~~~ 600 (833)
.++... +...+.-+.+ .+.+.|...+....+... .+......+-. .....+...++...+....... .
T Consensus 209 -~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~ 283 (618)
T 1qsa_A 209 -GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--Q 283 (618)
T ss_dssp -CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--C
T ss_pred -CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--C
Confidence 112221 1112222333 367888888888765432 23332222222 2233343456666666654432 3
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003295 601 DIYTYGVMIDGFCKADKIEEGETLFNEMISKKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKSRGILPTSVTYSSLIH 680 (833)
Q Consensus 601 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 680 (833)
+.....-.+....+.|+++.|...|..|...... .....--+..++...|+.++|..+|+.+... .+ -|..+.
T Consensus 284 ~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg~lA- 356 (618)
T 1qsa_A 284 STSLIERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVA- 356 (618)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHH-
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHHHHH-
Confidence 3322333334445678888888888877653221 3333444556677788888888888887642 12 132221
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC---hhH---HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003295 681 GLCNIGLIEDAKCLFDEMRKEGLLPN---VAC---YTALIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCK 754 (833)
Q Consensus 681 ~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 754 (833)
..+.|..-. . ......+. ... --..+..+...|....|...+..+.+. .+......+......
T Consensus 357 -a~~Lg~~~~-~------~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~ 425 (618)
T 1qsa_A 357 -AQRIGEEYE-L------KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFN 425 (618)
T ss_dssp -HHHTTCCCC-C------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHH
T ss_pred -HHHcCCCCC-C------CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHH
Confidence 122221000 0 00000010 000 112244566778888888888777653 233333445555566
Q ss_pred cCCHHHHHHHHH
Q 003295 755 LGDMKEAAKLLN 766 (833)
Q Consensus 755 ~g~~~~A~~~~~ 766 (833)
.|.++.++....
T Consensus 426 ~~~~~~~v~~~~ 437 (618)
T 1qsa_A 426 NQWWDLSVQATI 437 (618)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCChHHHHHHHH
Confidence 777776665443
No 294
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=43.82 E-value=2.8e+02 Score=28.34 Aligned_cols=218 Identities=12% Similarity=0.108 Sum_probs=97.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-----HhhHHHHHHHHHccCCHHHHHHHHHHHHHC--CCccCHHHHH---
Q 003295 572 LLLHGLCSLGKMEEAIELWEECKRTVFGPD-----IYTYGVMIDGFCKADKIEEGETLFNEMISK--KMELNPVVYN--- 641 (833)
Q Consensus 572 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~--- 641 (833)
-++..|...|++.+|.+++.++.+.--..| ...+..-+..|...+++.++...+...... .+.+++..-.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 356666677777777666666554211111 223444455666677777776666655432 1112222211
Q ss_pred -HHHHHHH-HcCChHHHHHHHHHHHhC----CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCChhHHHH
Q 003295 642 -TLIRAYC-KIGNTTAAFRLSNDMKSR----GIL--PTSVTYSSLIHGLCNIGLIEDAKCLFD-EMRKEGLLPNVACYTA 712 (833)
Q Consensus 642 -~li~~~~-~~g~~~~A~~~~~~m~~~----~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~~~~~ 712 (833)
.-.-.+. ..+++..|...|-+..+. +.+ .+...|..+.... .++..+-..++. +....-..|....+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhccccccccCCccHHHHHH
Confidence 1122234 567777776666554321 100 0112232222222 222222222221 1111112355555555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-CHHHHHHHHHHH
Q 003295 713 LIGGYCKLGQMDEAESVLQEMASINIHPNKITYTIMIGGYCKLGDMKEAAKLLNVMAEKG----ISP-DSITYNVFMDGH 787 (833)
Q Consensus 713 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~~~~~~l~~~~ 787 (833)
++.+| ..+++.+...+++.... .+..|......+ ..+++++.+++ +.| ...+...+...+
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~-------------~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l 326 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHL-------------GTLYDTMLEQNLCRIIEPYSRVQVAHVAESI 326 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHH-------------HHHHHHHHHHHHHHHHTTCSEEEHHHHHHHH
T ss_pred HHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHH-------------HHHHHHHHHHHHHHHhHhhceeeHHHHHHHH
Confidence 66654 45677666666665432 234454421111 11111111110 122 334455555555
Q ss_pred hcCCCHHHHHHHHHHHHHCCC
Q 003295 788 CKGGNVEEAFKVCDRMLSEGL 808 (833)
Q Consensus 788 ~~~g~~~~A~~~~~~m~~~g~ 808 (833)
.- ..+++...+-+|+..|.
T Consensus 327 ~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 327 QL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp TC--CHHHHHHHHHHHHHTTS
T ss_pred Cc--CHHHHHHHHHHHHHCCC
Confidence 32 56777778888877654
No 295
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=41.88 E-value=1.4e+02 Score=29.45 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=15.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH
Q 003295 641 NTLIRAYCKIGNTTAAFRLSNDMK 664 (833)
Q Consensus 641 ~~li~~~~~~g~~~~A~~~~~~m~ 664 (833)
..++.-|...|+.++|.+.++++.
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC
Confidence 345555666667777776666664
No 296
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=40.07 E-value=4.1e+02 Score=29.14 Aligned_cols=331 Identities=11% Similarity=0.064 Sum_probs=177.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 003295 254 LFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYSILINGLI 333 (833)
Q Consensus 254 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~ 333 (833)
.|.....+ .+.|++..+..+...+...-+ .....|..+...+ .....++...++++-. +.+.....-+.-+..+.
T Consensus 9 ~~~~a~~a-~~~~~~~~~~~l~~~l~~~pL-~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~--~~p~~~~Lr~~~l~~l~ 83 (618)
T 1qsa_A 9 RYAQIKQA-WDNRQMDVVEQMMPGLKDYPL-YPYLEYRQITDDL-MNQPAVTVTNFVRANP--TLPPARTLQSRFVNELA 83 (618)
T ss_dssp HHHHHHHH-HHTTCHHHHHHHSGGGTTSTT-HHHHHHHHHHHTG-GGCCHHHHHHHHHHCT--TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHCCCHHHHHHHHHhhcCCCc-HHHHHHHHHHhCc-ccCCHHHHHHHHHHCC--CChhHHHHHHHHHHHHH
Confidence 34444443 467888888887776643211 1223444443332 1224454444443321 11111222344556677
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHH
Q 003295 334 KLEKFDDANFVLKEMSVRGFVPNYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVTFNSLIHGFCKSGQMDNAEN 413 (833)
Q Consensus 334 ~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 413 (833)
+.+++......+.. ...+...-.....+....|+-.+|....+.+-..|-. .......++..+.+.|.+....
T Consensus 84 ~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~lt~~~- 156 (618)
T 1qsa_A 84 RREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQDPLA- 156 (618)
T ss_dssp HTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSCHHH-
T ss_pred hCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCCCHHH-
Confidence 78887776664432 1224444445666777889988888877777655432 3446677778777777655432
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003295 414 ALEEMLSRGLSINQGAYTSVIKWLCINSRFNSALHFTKEMLLRNLRPGDGLL-TLLVSGLCKNGKQAEATELCFRLFEKG 492 (833)
Q Consensus 414 ~l~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~g 492 (833)
+..+ +......|+...|..+...+ .++.... ..++....+-..+. .....
T Consensus 157 ~~~R----------------~~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~~p~~~~---~~~~~----- 207 (618)
T 1qsa_A 157 YLER----------------IRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANNPNTVL---TFART----- 207 (618)
T ss_dssp HHHH----------------HHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHCGGGHH---HHHHH-----
T ss_pred HHHH----------------HHHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHhChHhHH---HHHhc-----
Confidence 2222 23344556666666554432 2232222 22232222222221 11111
Q ss_pred CCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH----hcCChhhHHHHHHHHHHCCCCC
Q 003295 493 FTVNTV---TSNALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCC----KDGKPEEGFKLKEDMIKRGIQP 565 (833)
Q Consensus 493 ~~~~~~---~~~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p 565 (833)
..++.. .+...+.-+.+ .+.+.|...+....+.... +......+-..+. ..+...++...+....... .
T Consensus 208 ~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~ 283 (618)
T 1qsa_A 208 TGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--Q 283 (618)
T ss_dssp SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--C
T ss_pred cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--C
Confidence 112222 12222333333 4789999999988765433 4443333333333 3343557777777766543 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 003295 566 DNYTYNLLLHGLCSLGKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADKIEEGETLFNEMIS 630 (833)
Q Consensus 566 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 630 (833)
+.....-.+....+.|+++.|...|+.|..... ......-=+..++.+.|+.++|..+|..+..
T Consensus 284 ~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 284 STSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 443444455556678999999999998865321 1222223345677789999999999999875
No 297
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.70 E-value=1.3e+02 Score=28.19 Aligned_cols=88 Identities=10% Similarity=0.071 Sum_probs=49.3
Q ss_pred HHHHHHhcCChhHHHHHHHHhh---cCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 003295 224 LLNSLVKANEVQKGIEVFETMC---RGVSP----DVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHG 296 (833)
Q Consensus 224 ll~~~~~~g~~~~A~~~~~~~~---~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 296 (833)
-++.+....++++|..+.++.. .+.++ +.......++.-.....-.-+..+.+++.. .++...-...+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 3566777888888888887765 23322 111222233333333333444444444432 3445556666677
Q ss_pred HHhcCChhHHHHHHHHHH
Q 003295 297 LCRNGRLYEAFHLKEKMV 314 (833)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~ 314 (833)
+.+.|+-++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 777888888887776654
No 298
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=38.07 E-value=69 Score=28.10 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHCCCCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC
Q 003295 340 DANFVLKEMSVRGFVPN-YVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPN 391 (833)
Q Consensus 340 ~A~~~~~~m~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 391 (833)
++..+|..|..+|+--. ..-|......+...|++.+|.++|+.-++.+..|-
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 35566666666655433 33455556666666777777777776666665554
No 299
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=36.44 E-value=90 Score=28.92 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003295 724 DEAESVLQEMASINIHPN-KITYTIMIGGYCKLGDMKEAAKLLNVMAEKGISP 775 (833)
Q Consensus 724 ~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 775 (833)
+++..+|..|...||--. ...|......+-..|++++|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344444555544443322 2234444444444455555555555444444333
No 300
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=35.77 E-value=2.2e+02 Score=25.92 Aligned_cols=17 Identities=6% Similarity=0.206 Sum_probs=8.1
Q ss_pred HHHhcCChhHHHHHHHH
Q 003295 261 AFCKRGRIEDAIGLFTK 277 (833)
Q Consensus 261 ~~~~~g~~~~A~~~~~~ 277 (833)
..++.|+++....+++.
T Consensus 12 ~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 12 NLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHTCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHh
Confidence 33445555555544443
No 301
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=35.76 E-value=92 Score=28.78 Aligned_cols=37 Identities=8% Similarity=0.008 Sum_probs=16.4
Q ss_pred HHHHHHhCCCCCCHHH--HHHHHHHHHhcCChhHHHHHH
Q 003295 205 VFSIFSSKGIFPSLKT--CNFLLNSLVKANEVQKGIEVF 241 (833)
Q Consensus 205 ~f~~~~~~~~~p~~~~--~~~ll~~~~~~g~~~~A~~~~ 241 (833)
+++.+.+.|..++... -.+.+...++.|+.+-+..++
T Consensus 26 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 64 (237)
T 3b7b_A 26 ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI 64 (237)
T ss_dssp HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 4444555555443211 112334444556665544444
No 302
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=35.26 E-value=2.5e+02 Score=25.34 Aligned_cols=54 Identities=7% Similarity=0.174 Sum_probs=28.2
Q ss_pred cCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHhhCCCC
Q 003295 545 DGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGK-----MEEAIELWEECKRTVFG 599 (833)
Q Consensus 545 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~A~~~~~~~~~~~~~ 599 (833)
..+.+.|+-++.+|++.| .|....-..++-+.-.-|. ...|...++.....|.+
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 456777777777777777 5544444444444444332 22333444444444443
No 303
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=35.25 E-value=1.9e+02 Score=25.63 Aligned_cols=25 Identities=8% Similarity=0.143 Sum_probs=11.0
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCC
Q 003295 297 LCRNGRLYEAFHLKEKMVLREVEPS 321 (833)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~~~~p~ 321 (833)
.+..|..+.-.++.+.+.+.|..++
T Consensus 45 A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 45 VLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHcCCcchHHHHHHHHHHCCCCCC
Confidence 3344444433444444444444443
No 304
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=33.83 E-value=1.3e+02 Score=26.66 Aligned_cols=13 Identities=15% Similarity=-0.056 Sum_probs=5.8
Q ss_pred HhcCChhHHHHHH
Q 003295 298 CRNGRLYEAFHLK 310 (833)
Q Consensus 298 ~~~g~~~~A~~~~ 310 (833)
+..|+.+-+..++
T Consensus 80 ~~~~~~~~~~~Ll 92 (201)
T 3hra_A 80 GAQGRTEILAYML 92 (201)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 3445544444333
No 305
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=32.61 E-value=1.8e+02 Score=22.89 Aligned_cols=77 Identities=9% Similarity=-0.045 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003295 199 FGYAIDVFSIFSSKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKM 278 (833)
Q Consensus 199 ~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 278 (833)
-++|.-+-+.+...|. ...+--+-+..+..+|++++|..+.+.. +.||...|..+. -.+.|--+++...+.++
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~---c~pdlepw~ALc--e~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN---PWPALEPWFALC--EWHLGLGAALDRRLAGL 94 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC---CCGGGHHHHHHH--HHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC---CCchHHHHHHHH--HHhcccHHHHHHHHHHH
Confidence 4667766666666553 3333344456788999999999887766 479999986554 45789999999988888
Q ss_pred HHcC
Q 003295 279 EELG 282 (833)
Q Consensus 279 ~~~g 282 (833)
...|
T Consensus 95 a~sg 98 (115)
T 2uwj_G 95 GGSS 98 (115)
T ss_dssp HTCS
T ss_pred HhCC
Confidence 8765
No 306
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=32.17 E-value=4e+02 Score=27.23 Aligned_cols=180 Identities=18% Similarity=0.138 Sum_probs=81.0
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh--hHHHHHHHHHh
Q 003295 224 LLNSLVKANEVQKGIEVFETMCRGVSPDVF--LFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVV--TYNNIIHGLCR 299 (833)
Q Consensus 224 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~ 299 (833)
.+...++.|+.+-+..+++. |..++.. .....+...++.|+.+-+..+++ .|..++.. .-.+.+...++
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~---g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~ 89 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQR---GASPNVSNVKVETPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHCAAR 89 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHT---TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSCCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCCCHHHHHHH
Confidence 34445667787766666654 3333211 11123444566777765555544 34433321 11234444567
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh--hHHHHHHHHHHcCChHH
Q 003295 300 NGRLYEAFHLKEKMVLREVEPSLIT--YSILINGLIKLEKFDDANFVLKEMSVRGFVPNYV--VYNTLIDGYCKKGNISE 375 (833)
Q Consensus 300 ~g~~~~A~~~~~~m~~~~~~p~~~t--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~y~~li~~~~~~g~~~~ 375 (833)
.|+.+-+..+++. |..++... -.+.+...++.|+.+-+..+++ .|..++.. .-.+.+...++.|+.+-
T Consensus 90 ~g~~~~v~~Ll~~----ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~g~~~~ 161 (437)
T 1n11_A 90 IGHTNMVKLLLEN----NANPNLATTAGHTPLHIAAREGHVETVLALLE----KEASQACMTKKGFTPLHVAAKYGKVRV 161 (437)
T ss_dssp HTCHHHHHHHHHH----TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHhC----CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCCCHHHHHHHcCCHHH
Confidence 7776655544443 43333221 1123344456676655544443 33322211 11123444556677654
Q ss_pred HHHHHHHHHhCCCCCChhH--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 003295 376 ALKIRDDMVSKGMSPNSVT--FNSLIHGFCKSGQMDNAENALEEMLSRGLSIN 426 (833)
Q Consensus 376 A~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~l~~~~~~g~~~~ 426 (833)
+. .+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++
T Consensus 162 v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~ 206 (437)
T 1n11_A 162 AE----LLLERDAHPNAAGKNGLTPLHVAVHHNNLD----IVKLLLPRGGSPH 206 (437)
T ss_dssp HH----HHHHTTCCTTCCCSSCCCHHHHHHHTTCHH----HHHHHGGGTCCSC
T ss_pred HH----HHHhCCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCC
Confidence 33 3344454443321 112233445556654 3334444454443
No 307
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=32.15 E-value=1.9e+02 Score=22.88 Aligned_cols=83 Identities=13% Similarity=0.141 Sum_probs=55.6
Q ss_pred ChhHHHHHHHHhh-cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 003295 233 EVQKGIEVFETMC-RGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKE 311 (833)
Q Consensus 233 ~~~~A~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (833)
+.++|..+-+... .+. ....-.+-+..+..+|++++|..+.+.+. .||.+.|-+|-.+ |.|--+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHH
Confidence 3455555555544 222 22222334456778999999998877664 7999999887764 7888899998888
Q ss_pred HHHhCCCCCChhh
Q 003295 312 KMVLREVEPSLIT 324 (833)
Q Consensus 312 ~m~~~~~~p~~~t 324 (833)
++..+| .|....
T Consensus 94 ~la~sg-~p~~q~ 105 (116)
T 2p58_C 94 RLARSQ-DPRIQT 105 (116)
T ss_dssp HHTTCC-CHHHHH
T ss_pred HHHhCC-CHHHHH
Confidence 888776 444433
No 308
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=31.81 E-value=1.9e+02 Score=24.06 Aligned_cols=21 Identities=19% Similarity=0.442 Sum_probs=10.6
Q ss_pred HHHHHHccCCHHHHHHHHHHH
Q 003295 608 MIDGFCKADKIEEGETLFNEM 628 (833)
Q Consensus 608 li~~~~~~g~~~~A~~~~~~~ 628 (833)
++.-|...|+.++|...++++
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHh
Confidence 444444455555555555554
No 309
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=31.65 E-value=1.5e+02 Score=25.96 Aligned_cols=28 Identities=18% Similarity=0.064 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003295 778 ITYNVFMDGHCKGGNVEEAFKVCDRMLS 805 (833)
Q Consensus 778 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 805 (833)
..|+.++..|...|+.+||++.+..--.
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 4566677778888999999988865443
No 310
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=30.53 E-value=3.7e+02 Score=26.43 Aligned_cols=31 Identities=13% Similarity=0.054 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 003295 359 VYNTLIDGYCKKGNISEALKIRDDMVSKGMS 389 (833)
Q Consensus 359 ~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 389 (833)
+..+-+....|.+++..|..+-+++++.+..
T Consensus 209 aLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 209 ALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4455566777888888888888888887543
No 311
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=30.27 E-value=1.6e+02 Score=26.88 Aligned_cols=25 Identities=12% Similarity=-0.033 Sum_probs=11.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCC
Q 003295 364 IDGYCKKGNISEALKIRDDMVSKGM 388 (833)
Q Consensus 364 i~~~~~~g~~~~A~~~~~~m~~~g~ 388 (833)
+...+..|+.+-+..+++.+.+.|.
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCC
Confidence 3334445555544444444444443
No 312
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=30.13 E-value=2e+02 Score=26.16 Aligned_cols=149 Identities=9% Similarity=-0.122 Sum_probs=80.1
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh----------
Q 003295 224 LLNSLVKANEVQKGIEVFETMCRG-----VSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVV---------- 288 (833)
Q Consensus 224 ll~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------- 288 (833)
.+...++.|+.+-+..+++.-..- ...|..-++ .+...+..|+.+-+ +.+.+.|..++..
T Consensus 40 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~~~~~~~~ 114 (232)
T 2rfa_A 40 ALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQT-ALHIAVINQNVNLV----RALLARGASVSARATGSVFHYRP 114 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCC-HHHHHHHTTCHHHH----HHHHHTTCCTTCCCCSGGGSCCT
T ss_pred HHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcC-HHHHHHHcCCHHHH----HHHHhCCCCCCcccCCcceeecc
Confidence 455556778888777777653310 111222233 33444567776544 4444556555442
Q ss_pred -----hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-----
Q 003295 289 -----TYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLIT--YSILINGLIKLEKFDDANFVLKEMSVRGFVPN----- 356 (833)
Q Consensus 289 -----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----- 356 (833)
.-.+.+...++.|+.+-+..++ +.|..++... -.+-+...+..|+.+-+..+++.+.+.|..++
T Consensus 115 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~ 190 (232)
T 2rfa_A 115 HNLIYYGEHPLSFAACVGSEEIVRLLI----EHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLE 190 (232)
T ss_dssp TCSCCCCSSHHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGG
T ss_pred cccccCCCCHHHHHHHcCCHHHHHHHH----HCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhh
Confidence 1233445556777765554444 4555544321 12345556778888888888888888776442
Q ss_pred ----hhhHHHHHHHHHHcCChHHHHHHHHH
Q 003295 357 ----YVVYNTLIDGYCKKGNISEALKIRDD 382 (833)
Q Consensus 357 ----~~~y~~li~~~~~~g~~~~A~~~~~~ 382 (833)
..- .+-+...++.|+.+-+.-+++.
T Consensus 191 ~~~~~~g-~tpl~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 191 LVPNNQG-LTPFKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp GCCCTTS-CCHHHHHHHHTCHHHHHHHHHH
T ss_pred ccCCCCC-CCHHHHHHHcCCHHHHHHHHhc
Confidence 111 2234444556666555554444
No 313
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=29.29 E-value=3e+02 Score=25.71 Aligned_cols=90 Identities=13% Similarity=0.001 Sum_probs=50.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 003295 643 LIRAYCKIGNTTAAFRLSNDMKSR--GILP----TSVTYSSLIHGLCNIGLIEDAKCLFDEMRKEGLLPNVACYTALIGG 716 (833)
Q Consensus 643 li~~~~~~g~~~~A~~~~~~m~~~--~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 716 (833)
-++.+....++++|.+++++..+. +.++ ........+..-.....-.-+..+.+++ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 467777888888888888876542 2221 1112222233323323333344444444 22 3455555666677
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 003295 717 YCKLGQMDEAESVLQEMAS 735 (833)
Q Consensus 717 ~~~~g~~~~A~~~~~~m~~ 735 (833)
+.+.|+.++|.++|-+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 7788888888888777664
No 314
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=27.96 E-value=1.2e+02 Score=27.98 Aligned_cols=52 Identities=19% Similarity=0.172 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC
Q 003295 760 EAAKLLNVMAEKGISP-DSITYNVFMDGHCKGGNVEEAFKVCDRMLSEGLSLD 811 (833)
Q Consensus 760 ~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 811 (833)
++.++|..|..+||-- -...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4445555555554433 234445555555555555555555555555444443
No 315
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=27.67 E-value=2.6e+02 Score=23.13 Aligned_cols=63 Identities=16% Similarity=0.231 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC--hhhHHHHHHHHHHCCCC
Q 003295 501 NALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGK--PEEGFKLKEDMIKRGIQ 564 (833)
Q Consensus 501 ~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 564 (833)
+.++.-|...|+.++|...++++...... .......+..++-+.++ .+....++..+...|+-
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 44555566666666666666665422111 22233333333333321 24455566666555433
No 316
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=27.22 E-value=3.5e+02 Score=24.45 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=16.8
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003295 651 GNTTAAFRLSNDMKSRGILPTSVTYSSLIHGLCNIG 686 (833)
Q Consensus 651 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 686 (833)
.+++.|+-.+-+|++.| .|....-..++-+....|
T Consensus 28 SDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp TCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 45555555555555555 444333344444444433
No 317
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=26.65 E-value=3.6e+02 Score=24.60 Aligned_cols=92 Identities=13% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHh---cCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHhhCCCCCCHhhHHHHH
Q 003295 538 LILGCCK---DGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCSLGK-----MEEAIELWEECKRTVFGPDIYTYGVMI 609 (833)
Q Consensus 538 li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~~~~~li 609 (833)
+|+++.| ..+++.|+-++.+|++.|-.|....-..++-+.-.-|. ...|...++.....|.+.........+
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 117 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFLSQAS 117 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHHccCCHHHHHHHHHHHHH
Q 003295 610 DGFCKADKIEEGETLFNEMIS 630 (833)
Q Consensus 610 ~~~~~~g~~~~A~~~~~~~~~ 630 (833)
--++.+-+-..+ ..++...+
T Consensus 118 iyLA~APKSNs~-~A~~~A~~ 137 (213)
T 3ctd_A 118 LYLAISPKSNST-KSIFKAME 137 (213)
T ss_dssp HHHHHSCCCCGG-GHHHHHHH
T ss_pred HHHHcCCccHHH-HHHHHHHH
No 318
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.58 E-value=3.8e+02 Score=28.52 Aligned_cols=59 Identities=17% Similarity=0.071 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh------hhHH-HHHHHHHhcCChhHHHHHHHHHHH
Q 003295 289 TYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSL------ITYS-ILINGLIKLEKFDDANFVLKEMSV 350 (833)
Q Consensus 289 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~t~~-~li~~~~~~g~~~~A~~~~~~m~~ 350 (833)
.+|.+++.|...+.++.|..+..+..- +... .+|. -+...+.-.+++.+|.+.|.....
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~f---P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEY---PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCS---CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcC---CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455555555555666666665555431 1110 1111 123334445566666665555544
No 319
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=25.53 E-value=4.8e+02 Score=25.42 Aligned_cols=14 Identities=14% Similarity=0.226 Sum_probs=6.4
Q ss_pred HHHHcCChHHHHHH
Q 003295 366 GYCKKGNISEALKI 379 (833)
Q Consensus 366 ~~~~~g~~~~A~~~ 379 (833)
..++.|+.+-+..+
T Consensus 174 ~A~~~g~~~~v~~L 187 (337)
T 4g8k_A 174 DAAEKGHVEVLKIL 187 (337)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHHCCCHHHHHHH
Confidence 33455555443333
No 320
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=25.47 E-value=3.2e+02 Score=26.71 Aligned_cols=13 Identities=8% Similarity=-0.005 Sum_probs=5.9
Q ss_pred HhcCChhHHHHHH
Q 003295 229 VKANEVQKGIEVF 241 (833)
Q Consensus 229 ~~~g~~~~A~~~~ 241 (833)
++.|..+-+..++
T Consensus 176 ~~~g~~~~v~~LL 188 (337)
T 4g8k_A 176 AEKGHVEVLKILL 188 (337)
T ss_dssp HHHTCHHHHHHHH
T ss_pred HHCCCHHHHHHHH
Confidence 3445554444443
No 321
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=25.43 E-value=4.3e+02 Score=30.91 Aligned_cols=131 Identities=13% Similarity=0.083 Sum_probs=64.8
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 003295 224 LLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRL 303 (833)
Q Consensus 224 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 303 (833)
++..+...|.++-|.++. .-.+.+...-..+..+|...|++++|...|++.-. |+..+....+. .
T Consensus 816 l~~~L~~~~~~~~a~eL~----~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~----------~ 880 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----GWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAV----------L 880 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----GGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGG----------G
T ss_pred HHHHHHHhcHHHHHHHHH----hhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccc----------h
Confidence 445555566655544322 22334444444566666677777777777766532 32221111000 0
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHHcC
Q 003295 304 YEAFHLKEKMVLREVEPSLITYSILINGLIKLEKFDDANFVLKEMSVRGFVPNY----VVYNTLIDGYCKKG 371 (833)
Q Consensus 304 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~y~~li~~~~~~g 371 (833)
.....++..... . .....-|..++..|-+.+-++-+.+.-+...+.--.-|. ..|..+..+.|..|
T Consensus 881 ~~~~~ll~~~e~-~-~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 881 REFQEIAEKYHH-Q-NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHTTT-C-SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhccCcccc-c-chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 000111110000 0 011124677888888888888888887777754222222 25666666666554
No 322
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=25.21 E-value=3.5e+02 Score=23.72 Aligned_cols=14 Identities=0% Similarity=0.112 Sum_probs=7.1
Q ss_pred HhcCChhHHHHHHH
Q 003295 263 CKRGRIEDAIGLFT 276 (833)
Q Consensus 263 ~~~g~~~~A~~~~~ 276 (833)
+..|+.+....++.
T Consensus 13 ~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 13 ANQRDTKKVKEILQ 26 (201)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhccHHHHHHHHH
Confidence 44555555554443
No 323
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=25.00 E-value=2.6e+02 Score=24.06 Aligned_cols=63 Identities=16% Similarity=0.231 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC--hhhHHHHHHHHHHCCCC
Q 003295 501 NALIHGMCEAGNLKEAGKLLMEMLQRGLILDKVTYNTLILGCCKDGK--PEEGFKLKEDMIKRGIQ 564 (833)
Q Consensus 501 ~~li~~~~~~g~~~~A~~~l~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 564 (833)
+.++.-|...|+.++|...++++...... .......+..++-+.++ .+.+..++..+...|+-
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 44555566666666666666665422111 22233333333333222 23455555555555433
No 324
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=24.37 E-value=3.9e+02 Score=24.06 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=9.7
Q ss_pred CChHHHHHHHHHHHhCCCCCC
Q 003295 651 GNTTAAFRLSNDMKSRGILPT 671 (833)
Q Consensus 651 g~~~~A~~~~~~m~~~~~~p~ 671 (833)
.+++.|+-.+-+|++.|-.|.
T Consensus 21 SDpDAAly~LaRMl~~GEDp~ 41 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPL 41 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHH
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 444444444444544443333
No 325
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=23.71 E-value=1.8e+02 Score=25.00 Aligned_cols=22 Identities=18% Similarity=0.446 Sum_probs=11.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHH
Q 003295 607 VMIDGFCKADKIEEGETLFNEM 628 (833)
Q Consensus 607 ~li~~~~~~g~~~~A~~~~~~~ 628 (833)
.++.-|...|+.++|...++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444444555555555555554
No 326
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=23.45 E-value=3.8e+02 Score=23.57 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=10.4
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCC
Q 003295 367 YCKKGNISEALKIRDDMVSKGMSPN 391 (833)
Q Consensus 367 ~~~~g~~~~A~~~~~~m~~~g~~p~ 391 (833)
.+..|+.+.-.++.+.+++.|..++
T Consensus 45 A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 45 VLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHcCCcchHHHHHHHHHHCCCCCC
Confidence 3344444333344444444444443
No 327
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.67 E-value=4.2e+02 Score=23.84 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=21.1
Q ss_pred cCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003295 545 DGKPEEGFKLKEDMIKRGIQPDNYTYNLLLHGLCS 579 (833)
Q Consensus 545 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 579 (833)
..+.+.|+-++.+|++.|-.|....-..++-+.-.
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsED 54 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIASED 54 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 46677777777777777766554444444444433
No 328
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.66 E-value=2.6e+02 Score=24.31 Aligned_cols=51 Identities=6% Similarity=-0.134 Sum_probs=28.0
Q ss_pred cCChhHHHHHHHHHHHcCCCC--ChhhHHHHHH-H-----HHhcCChhHHHHHHHHHHh
Q 003295 265 RGRIEDAIGLFTKMEELGIAP--NVVTYNNIIH-G-----LCRNGRLYEAFHLKEKMVL 315 (833)
Q Consensus 265 ~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~-~-----~~~~g~~~~A~~~~~~m~~ 315 (833)
.|++-+|-++++..-.....+ +...|..||. . ..+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 366666666666665543333 3334444444 1 2246777777777766654
No 329
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=22.17 E-value=1.1e+02 Score=25.82 Aligned_cols=15 Identities=20% Similarity=0.527 Sum_probs=6.7
Q ss_pred HhcCChhHHHHHHHH
Q 003295 263 CKRGRIEDAIGLFTK 277 (833)
Q Consensus 263 ~~~g~~~~A~~~~~~ 277 (833)
++.|+.+....+++.
T Consensus 10 ~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 10 AARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHh
Confidence 344444444444443
No 330
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=22.00 E-value=1.7e+02 Score=27.37 Aligned_cols=193 Identities=11% Similarity=-0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh------hhHHHHHHHHHhc---CChhHHHHHHHHHHHCCCCC------
Q 003295 291 NNIIHGLCRNGRLYEAFHLKEKMVLREVEPSL------ITYSILINGLIKL---EKFDDANFVLKEMSVRGFVP------ 355 (833)
Q Consensus 291 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~t~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p------ 355 (833)
.+.+...++.|+.+....+++.+...|..++. ..-.+.+...+.. |+.+-+..+++.-...+...
T Consensus 3 ~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 82 (256)
T 2etb_A 3 RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQ 82 (256)
T ss_dssp HHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCC
T ss_pred ccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccc
Q ss_pred ---ChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhH---------------HHHHHHHHHhcCChhHHHHHHH-
Q 003295 356 ---NYVVYNTLIDGYCKKGNISEALKIRDDMVSKGMSPNSVT---------------FNSLIHGFCKSGQMDNAENALE- 416 (833)
Q Consensus 356 ---~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---------------~~~li~~~~~~g~~~~A~~~l~- 416 (833)
....-.+.+...+..|+.+-+..+++. |..++... -.+.+...+..|+.+-+.-+++
T Consensus 83 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ 158 (256)
T 2etb_A 83 CTDEFYQGHSALHIAIEKRSLQCVKLLVEN----GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN 158 (256)
T ss_dssp CCSTTTTTCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred cccccccCCCHHHHHHHcCCHHHHHHHHHc----CCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Q ss_pred --HHHHCCCCCCcccHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCC---------ChhhHHHHHHHHHhcCCHHHHH
Q 003295 417 --EMLSRGLSINQGAYTSVIKWLCINSRFN---SALHFTKEMLLRNLRP---------GDGLLTLLVSGLCKNGKQAEAT 482 (833)
Q Consensus 417 --~~~~~g~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~ 482 (833)
.-...........--....+....+..+ ...++++.+++.|..+ ....-.+-+...++.|..+-+.
T Consensus 159 ~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~ 238 (256)
T 2etb_A 159 PHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFR 238 (256)
T ss_dssp SSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred cccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHH
Q ss_pred HHHHH
Q 003295 483 ELCFR 487 (833)
Q Consensus 483 ~~~~~ 487 (833)
-+++.
T Consensus 239 ~Ll~~ 243 (256)
T 2etb_A 239 HILQR 243 (256)
T ss_dssp HHHHH
T ss_pred HHHhC
No 331
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=21.81 E-value=44 Score=23.40 Aligned_cols=37 Identities=14% Similarity=0.065 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCh
Q 003295 198 GFGYAIDVFSIFSSKGIFPSLKTCNFLLNSL-VKANEV 234 (833)
Q Consensus 198 ~~~~A~~~f~~~~~~~~~p~~~~~~~ll~~~-~~~g~~ 234 (833)
+.++|.+.|..|++..-.++..+|...+..+ ++-.++
T Consensus 1 ~~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY 38 (59)
T 2b7e_A 1 GAMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRY 38 (59)
T ss_dssp CTTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHH
T ss_pred ChhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCcc
No 332
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=21.03 E-value=2.8e+02 Score=23.46 Aligned_cols=123 Identities=14% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHH--HHHHHHH
Q 003295 256 STAINAFCKRGRIEDAIGLFTKMEELGIAPNVVTYNNIIHGLCRNGRLYEAFHLKEKMVLREVEPSLITYS--ILINGLI 333 (833)
Q Consensus 256 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~--~li~~~~ 333 (833)
...+...++.|+.+....+++.-...-...+..-++.+..+..... .++++.+.+.|..++..... +.+...+
T Consensus 9 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNR-----VSVVEYLLQHGADVHAKDKGGLVPLHNAC 83 (165)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred hHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcCh-----HHHHHHHHhcCCCCCccCCCCCCHHHHHH
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHH--HHHHHHHHcCChHHHHHHHHHHHhCCCCCC
Q 003295 334 KLEKFDDANFVLKEMSVRGFVPNYVVYN--TLIDGYCKKGNISEALKIRDDMVSKGMSPN 391 (833)
Q Consensus 334 ~~g~~~~A~~~~~~m~~~g~~p~~~~y~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 391 (833)
..|+.+ +.+.+.+.|..++..... +.+...++.|+.+ +.+.+.+.|..++
T Consensus 84 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~ 135 (165)
T 3twr_A 84 SYGHYE----VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE----ICKLLLQHGADPT 135 (165)
T ss_dssp HTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred HcCcHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCc
No 333
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=21.00 E-value=2.5e+02 Score=25.35 Aligned_cols=38 Identities=8% Similarity=-0.066 Sum_probs=16.2
Q ss_pred HHHHHHhCCCCCCHHHH--HHHHHHHHhcCChhHHHHHHH
Q 003295 205 VFSIFSSKGIFPSLKTC--NFLLNSLVKANEVQKGIEVFE 242 (833)
Q Consensus 205 ~f~~~~~~~~~p~~~~~--~~ll~~~~~~g~~~~A~~~~~ 242 (833)
+++.+.+.|..++.... .+.+...++.|+.+-+..+++
T Consensus 40 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 79 (223)
T 2f8y_A 40 AAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR 79 (223)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 34444555554432211 123333445555554444443
No 334
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.90 E-value=4e+02 Score=26.44 Aligned_cols=23 Identities=4% Similarity=0.393 Sum_probs=11.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHh
Q 003295 222 NFLLNSLVKANEVQKGIEVFETM 244 (833)
Q Consensus 222 ~~ll~~~~~~g~~~~A~~~~~~~ 244 (833)
..++.-|...|+.++|...++++
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Confidence 34444455555555555555444
No 335
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=20.48 E-value=7.3e+02 Score=25.73 Aligned_cols=152 Identities=8% Similarity=0.004 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHhh--------CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCC----CCCHHHHHHHHHHHHh
Q 003295 512 NLKEAGKLLMEMLQ--------RGLILDKVTYNTLILGCCKDGKPEEGFKLKEDMIKRGI----QPDNYTYNLLLHGLCS 579 (833)
Q Consensus 512 ~~~~A~~~l~~m~~--------~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~~~li~~~~~ 579 (833)
..++...++..... .++..+......++.. ..|+..++..+++.+..... .....+...+-.+..+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Q ss_pred c------------------------CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHccCC-----HHHHHHHHHHHHH
Q 003295 580 L------------------------GKMEEAIELWEECKRTVFGPDIYTYGVMIDGFCKADK-----IEEGETLFNEMIS 630 (833)
Q Consensus 580 ~------------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~~~~ 630 (833)
. ++.+.|+.++.+|.+.|..|....-..++.+.-.-|. ..-|...++....
T Consensus 244 ~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~ 323 (447)
T 3pvs_A 244 RSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTR 323 (447)
T ss_dssp CCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHH
T ss_pred hhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHH
Q ss_pred CCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003295 631 KKMELNPVVYNTLIRAYCKIGNTTAAFRLSNDMKS 665 (833)
Q Consensus 631 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 665 (833)
.|.+--.......+-.++..-+-..+...++...+
T Consensus 324 ~g~pe~~~~l~~~~~~la~~pksn~~~~a~~~a~~ 358 (447)
T 3pvs_A 324 VGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALA 358 (447)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
No 336
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=20.46 E-value=7.2e+02 Score=25.93 Aligned_cols=72 Identities=10% Similarity=0.086 Sum_probs=44.9
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 003295 211 SKGIFPSLKTCNFLLNSLVKANEVQKGIEVFETMCRGVSPDVFLFSTAINAFCKRGRIEDAIGLFTKMEELG 282 (833)
Q Consensus 211 ~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 282 (833)
+.|..-....|..-.+.+...|++++|.++--...+|.-.+..|.+.+-.+=...|...--+..|.-+.+.|
T Consensus 354 R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 354 RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS
T ss_pred hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC
Confidence 444443444455556777788888888888877777766677776554444344455555555666655554
Done!